Query psy1502
Match_columns 597
No_of_seqs 272 out of 3206
Neff 7.9
Searched_HMMs 29240
Date Fri Aug 16 18:22:11 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1502.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/1502hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4f4c_A Multidrug resistance pr 100.0 1.5E-93 5.1E-98 864.5 62.2 499 65-565 138-653 (1321)
2 4f4c_A Multidrug resistance pr 100.0 1.4E-93 4.6E-98 864.9 50.0 502 63-567 794-1318(1321)
3 3qf4_B Uncharacterized ABC tra 100.0 1.1E-87 3.7E-92 756.4 59.5 529 30-565 47-590 (598)
4 3qf4_A ABC transporter, ATP-bi 100.0 1E-86 3.5E-91 746.5 65.4 542 18-565 17-578 (587)
5 4a82_A Cystic fibrosis transme 100.0 1.2E-86 4.3E-91 745.4 58.6 531 31-564 25-575 (578)
6 3b5x_A Lipid A export ATP-bind 100.0 5.9E-85 2E-89 732.7 70.1 527 30-565 35-579 (582)
7 3b60_A Lipid A export ATP-bind 100.0 5.8E-85 2E-89 732.8 66.0 527 30-565 35-579 (582)
8 2yl4_A ATP-binding cassette SU 100.0 1.8E-84 6.1E-89 730.6 67.4 533 30-565 29-583 (595)
9 3g5u_A MCG1178, multidrug resi 100.0 1.3E-84 4.4E-89 784.8 54.0 499 65-565 110-625 (1284)
10 3g5u_A MCG1178, multidrug resi 100.0 8.4E-79 2.9E-83 734.2 52.6 497 65-566 751-1271(1284)
11 3nh6_A ATP-binding cassette SU 100.0 3.2E-67 1.1E-71 539.8 22.8 264 300-566 16-290 (306)
12 2ff7_A Alpha-hemolysin translo 100.0 1E-55 3.5E-60 442.8 27.1 214 339-552 6-223 (247)
13 2ghi_A Transport protein; mult 100.0 3.4E-55 1.2E-59 442.3 24.7 214 339-552 16-233 (260)
14 1mv5_A LMRA, multidrug resista 100.0 1.8E-55 6.1E-60 440.4 17.5 212 341-552 2-217 (243)
15 2ixe_A Antigen peptide transpo 100.0 4.9E-54 1.7E-58 436.2 24.4 214 339-552 15-236 (271)
16 3gd7_A Fusion complex of cysti 100.0 6.4E-54 2.2E-58 454.3 23.1 218 335-552 14-233 (390)
17 2cbz_A Multidrug resistance-as 100.0 1.7E-51 5.9E-56 409.8 22.1 200 340-552 3-208 (237)
18 2pze_A Cystic fibrosis transme 100.0 3.2E-51 1.1E-55 405.8 22.7 201 339-552 5-209 (229)
19 3tif_A Uncharacterized ABC tra 100.0 9.4E-50 3.2E-54 396.7 22.7 206 341-552 2-225 (235)
20 3gfo_A Cobalt import ATP-bindi 100.0 2.2E-49 7.6E-54 402.0 22.0 207 340-552 7-224 (275)
21 1ji0_A ABC transporter; ATP bi 100.0 8.2E-49 2.8E-53 391.3 23.1 207 340-552 6-219 (240)
22 3tui_C Methionine import ATP-b 100.0 3.5E-48 1.2E-52 405.0 25.5 203 340-552 24-244 (366)
23 2pcj_A ABC transporter, lipopr 100.0 3.8E-48 1.3E-52 382.5 20.0 206 340-552 4-219 (224)
24 4g1u_C Hemin import ATP-bindin 100.0 1.2E-47 4.1E-52 388.1 22.7 202 340-552 11-228 (266)
25 2olj_A Amino acid ABC transpor 100.0 2.5E-47 8.5E-52 384.7 23.9 206 340-552 24-239 (263)
26 1vpl_A ABC transporter, ATP-bi 100.0 4.2E-47 1.5E-51 381.7 24.9 202 339-552 14-226 (256)
27 1g6h_A High-affinity branched- 100.0 2.5E-47 8.6E-52 384.4 22.8 206 340-552 7-233 (257)
28 2bbs_A Cystic fibrosis transme 100.0 1E-47 3.5E-52 392.7 20.2 198 338-552 38-238 (290)
29 2yz2_A Putative ABC transporte 100.0 3.5E-47 1.2E-51 385.2 22.3 199 341-552 3-218 (266)
30 1b0u_A Histidine permease; ABC 100.0 2.5E-47 8.6E-52 385.2 20.8 202 340-552 6-233 (262)
31 3fvq_A Fe(3+) IONS import ATP- 100.0 1.5E-46 5E-51 392.7 24.0 202 340-552 4-219 (359)
32 3rlf_A Maltose/maltodextrin im 100.0 2.5E-46 8.5E-51 393.5 24.5 204 340-552 3-214 (381)
33 2ihy_A ABC transporter, ATP-bi 100.0 1.8E-46 6.2E-51 381.8 21.4 202 340-552 21-243 (279)
34 2d2e_A SUFC protein; ABC-ATPas 100.0 4.3E-46 1.5E-50 373.9 23.8 205 341-552 4-224 (250)
35 2qi9_C Vitamin B12 import ATP- 100.0 1.4E-46 4.9E-51 376.4 20.1 196 341-552 5-213 (249)
36 2onk_A Molybdate/tungstate ABC 100.0 8.7E-47 3E-51 376.1 18.3 196 341-552 2-207 (240)
37 1z47_A CYSA, putative ABC-tran 100.0 1.4E-46 5E-51 392.9 19.9 201 340-552 14-226 (355)
38 2yyz_A Sugar ABC transporter, 100.0 4E-46 1.4E-50 390.5 22.5 199 341-552 4-214 (359)
39 1v43_A Sugar-binding transport 100.0 8.7E-46 3E-50 389.7 22.2 200 340-552 11-222 (372)
40 3d31_A Sulfate/molybdate ABC t 100.0 4.3E-46 1.5E-50 389.0 19.7 198 341-552 2-208 (348)
41 1oxx_K GLCV, glucose, ABC tran 100.0 2.7E-46 9.4E-51 391.9 17.8 201 341-552 4-221 (353)
42 2zu0_C Probable ATP-dependent 100.0 2.2E-45 7.4E-50 372.1 23.8 206 340-552 20-245 (267)
43 2it1_A 362AA long hypothetical 100.0 1.9E-45 6.7E-50 385.7 23.5 200 340-552 3-214 (362)
44 2pjz_A Hypothetical protein ST 100.0 8.3E-46 2.8E-50 373.6 19.7 195 341-552 2-206 (263)
45 1sgw_A Putative ABC transporte 100.0 3.9E-46 1.3E-50 364.7 13.9 193 340-550 10-210 (214)
46 2nq2_C Hypothetical ABC transp 100.0 1.5E-45 5E-50 370.3 18.2 189 340-552 4-208 (253)
47 1g29_1 MALK, maltose transport 100.0 8.3E-45 2.8E-49 382.9 23.2 200 340-552 3-220 (372)
48 2v9p_A Replication protein E1; 100.0 2.1E-41 7.2E-46 346.8 -17.5 211 290-565 56-275 (305)
49 2iw3_A Elongation factor 3A; a 100.0 9.5E-36 3.2E-40 343.7 14.4 199 340-552 671-978 (986)
50 3ozx_A RNAse L inhibitor; ATP 100.0 1.3E-35 4.3E-40 327.7 14.8 185 340-548 269-462 (538)
51 1yqt_A RNAse L inhibitor; ATP- 100.0 3.9E-35 1.3E-39 324.5 15.6 188 340-552 287-484 (538)
52 3bk7_A ABC transporter ATP-bin 100.0 5.3E-35 1.8E-39 326.8 16.4 188 340-552 357-554 (607)
53 3bk7_A ABC transporter ATP-bin 100.0 2.3E-35 7.9E-40 329.8 12.1 193 344-549 95-305 (607)
54 1yqt_A RNAse L inhibitor; ATP- 100.0 2.8E-35 9.4E-40 325.7 10.3 196 341-549 21-235 (538)
55 2iw3_A Elongation factor 3A; a 100.0 6.4E-33 2.2E-37 320.2 22.2 187 339-552 434-625 (986)
56 3j16_B RLI1P; ribosome recycli 100.0 2.9E-33 1E-37 312.2 17.1 187 343-552 349-550 (608)
57 3ux8_A Excinuclease ABC, A sub 100.0 1.6E-33 5.6E-38 320.7 14.2 192 353-552 30-289 (670)
58 3ux8_A Excinuclease ABC, A sub 100.0 8.9E-34 3E-38 322.9 12.0 190 354-552 335-631 (670)
59 3j16_B RLI1P; ribosome recycli 100.0 6.1E-33 2.1E-37 309.7 13.6 195 345-550 82-299 (608)
60 3ozx_A RNAse L inhibitor; ATP 100.0 7.8E-33 2.7E-37 305.5 8.9 193 344-550 3-215 (538)
61 4aby_A DNA repair protein RECN 100.0 3.2E-32 1.1E-36 292.9 12.7 208 355-563 49-395 (415)
62 3pih_A Uvrabc system protein A 100.0 4.7E-31 1.6E-35 304.5 19.9 198 354-552 597-893 (916)
63 2npi_A Protein CLP1; CLP1-PCF1 100.0 1.1E-33 3.8E-38 306.3 -11.7 181 340-552 118-330 (460)
64 2r6f_A Excinuclease ABC subuni 100.0 1.6E-29 5.6E-34 289.6 18.3 198 340-552 629-933 (972)
65 2vf7_A UVRA2, excinuclease ABC 100.0 1.9E-29 6.5E-34 288.9 17.7 203 339-552 501-818 (842)
66 2ygr_A Uvrabc system protein A 100.0 3.2E-29 1.1E-33 288.2 17.2 198 340-552 647-951 (993)
67 1e69_A Chromosome segregation 100.0 1.7E-28 5.8E-33 255.2 14.2 205 340-552 5-303 (322)
68 1z6g_A Guanylate kinase; struc 99.9 1E-30 3.5E-35 256.9 -10.4 166 355-547 11-193 (218)
69 3b85_A Phosphate starvation-in 99.9 1.4E-29 4.8E-34 246.5 -3.3 159 354-550 13-172 (208)
70 1ye8_A Protein THEP1, hypothet 99.9 5.7E-27 2E-31 222.6 6.1 147 369-552 2-159 (178)
71 4gp7_A Metallophosphoesterase; 99.9 2.8E-27 9.6E-32 223.3 3.8 149 359-543 1-169 (171)
72 2pt7_A CAG-ALFA; ATPase, prote 99.9 2.8E-28 9.5E-33 253.9 -3.7 140 343-550 151-292 (330)
73 3qf7_A RAD50; ABC-ATPase, ATPa 99.9 7E-26 2.4E-30 239.2 13.5 82 471-552 276-364 (365)
74 1tq4_A IIGP1, interferon-induc 99.9 1.6E-26 5.4E-31 246.2 -5.2 167 354-543 36-248 (413)
75 2dpy_A FLII, flagellum-specifi 99.9 4.2E-26 1.4E-30 245.6 -6.2 184 339-552 130-335 (438)
76 2eyu_A Twitching motility prot 99.9 3.9E-27 1.3E-31 237.3 -16.7 182 341-535 6-242 (261)
77 3sop_A Neuronal-specific septi 99.9 1.9E-24 6.4E-29 218.8 -0.4 150 369-538 4-155 (270)
78 2ewv_A Twitching motility prot 99.9 1.1E-25 3.7E-30 238.1 -10.9 173 355-535 126-353 (372)
79 3aez_A Pantothenate kinase; tr 99.9 3.4E-25 1.2E-29 228.6 -7.5 176 338-549 41-246 (312)
80 2f1r_A Molybdopterin-guanine d 99.9 5E-25 1.7E-29 207.5 -6.4 110 368-496 3-125 (171)
81 2vf7_A UVRA2, excinuclease ABC 99.9 2.8E-22 9.6E-27 229.7 14.0 91 462-552 366-466 (842)
82 2i3b_A HCR-ntpase, human cance 99.9 2.1E-24 7.1E-29 206.8 -3.8 168 367-563 1-182 (189)
83 1znw_A Guanylate kinase, GMP k 99.9 5.1E-24 1.7E-28 207.2 -5.2 175 354-547 9-203 (207)
84 3b9q_A Chloroplast SRP recepto 99.9 4.2E-23 1.5E-27 212.0 1.1 173 358-552 91-286 (302)
85 1lvg_A Guanylate kinase, GMP k 99.9 2E-25 7E-30 215.7 -15.7 158 364-547 1-173 (198)
86 2o5v_A DNA replication and rep 99.9 2.8E-21 9.5E-26 202.6 14.2 74 474-552 265-347 (359)
87 2og2_A Putative signal recogni 99.8 4.6E-22 1.6E-26 208.2 2.3 173 358-552 148-343 (359)
88 2obl_A ESCN; ATPase, hydrolase 99.8 9.9E-22 3.4E-26 205.5 2.0 185 340-552 45-246 (347)
89 1tf7_A KAIC; homohexamer, hexa 99.8 8.3E-22 2.8E-26 218.0 -1.3 170 349-547 20-209 (525)
90 1cr0_A DNA primase/helicase; R 99.8 2.1E-20 7.3E-25 191.6 9.0 181 354-550 22-237 (296)
91 3qkt_A DNA double-strand break 99.8 2.1E-19 7E-24 188.0 15.8 75 472-546 246-327 (339)
92 2o8b_B DNA mismatch repair pro 99.8 1.4E-19 4.7E-24 212.5 14.5 165 339-551 749-930 (1022)
93 4ad8_A DNA repair protein RECN 99.8 5.1E-20 1.8E-24 203.3 10.3 76 473-548 395-473 (517)
94 2jeo_A Uridine-cytidine kinase 99.8 2.8E-21 9.6E-26 192.8 -1.1 165 353-550 11-181 (245)
95 3asz_A Uridine kinase; cytidin 99.8 2E-22 6.8E-27 196.0 -9.8 139 364-533 3-161 (211)
96 1tf7_A KAIC; homohexamer, hexa 99.8 1.8E-20 6E-25 207.4 4.0 170 341-549 258-444 (525)
97 1lw7_A Transcriptional regulat 99.8 2.1E-21 7.1E-26 205.2 -6.3 145 356-502 157-329 (365)
98 1f2t_B RAD50 ABC-ATPase; DNA d 99.8 5.3E-19 1.8E-23 162.2 10.2 87 463-549 41-141 (148)
99 1w1w_A Structural maintenance 99.8 4E-19 1.4E-23 191.8 9.0 73 474-546 333-410 (430)
100 3pih_A Uvrabc system protein A 99.8 5.9E-19 2E-23 203.9 10.6 156 391-563 393-560 (916)
101 2ehv_A Hypothetical protein PH 99.8 3.6E-20 1.2E-24 184.2 -0.3 180 341-547 7-207 (251)
102 1pui_A ENGB, probable GTP-bind 99.8 1.1E-20 3.6E-25 183.0 -4.7 168 341-522 4-198 (210)
103 1pzn_A RAD51, DNA repair and r 99.7 2.8E-19 9.4E-24 187.5 2.9 165 344-552 111-306 (349)
104 4a74_A DNA repair and recombin 99.7 1E-18 3.4E-23 171.5 6.3 169 343-549 4-201 (231)
105 2qag_C Septin-7; cell cycle, c 99.7 1.8E-19 6.2E-24 192.4 0.1 165 339-536 10-180 (418)
106 2gza_A Type IV secretion syste 99.7 2.3E-20 7.8E-25 196.7 -6.8 145 342-488 137-301 (361)
107 3jvv_A Twitching mobility prot 99.7 1.3E-18 4.3E-23 182.4 6.2 145 344-548 92-246 (356)
108 1ewq_A DNA mismatch repair pro 99.7 1E-18 3.5E-23 199.3 5.5 143 339-539 549-704 (765)
109 1odf_A YGR205W, hypothetical 3 99.7 2.7E-20 9.1E-25 190.1 -7.1 128 365-509 29-169 (290)
110 3kta_B Chromosome segregation 99.7 9E-18 3.1E-22 158.0 10.3 77 473-549 63-145 (173)
111 2r6f_A Excinuclease ABC subuni 99.7 3.7E-18 1.3E-22 196.0 9.1 140 391-552 433-591 (972)
112 3thx_A DNA mismatch repair pro 99.7 1E-17 3.5E-22 194.4 10.1 164 339-552 630-804 (934)
113 3szr_A Interferon-induced GTP- 99.7 3.2E-19 1.1E-23 200.1 -5.8 180 340-552 10-228 (608)
114 2qnr_A Septin-2, protein NEDD5 99.7 1.9E-18 6.6E-23 177.5 0.4 164 344-535 2-169 (301)
115 2ygr_A Uvrabc system protein A 99.7 7.1E-17 2.4E-21 186.1 12.5 133 425-563 466-617 (993)
116 1rj9_A FTSY, signal recognitio 99.7 1.7E-17 5.9E-22 170.3 6.1 150 365-536 100-261 (304)
117 2w0m_A SSO2452; RECA, SSPF, un 99.7 3.6E-17 1.2E-21 160.3 5.8 167 351-548 6-192 (235)
118 3c8u_A Fructokinase; YP_612366 99.7 1.1E-19 3.9E-24 176.5 -12.8 148 364-534 19-184 (208)
119 2qag_B Septin-6, protein NEDD5 99.6 3.2E-17 1.1E-21 174.4 3.9 179 340-531 16-217 (427)
120 2cvh_A DNA repair and recombin 99.6 3E-16 1E-20 152.7 7.6 153 353-548 5-185 (220)
121 3thx_B DNA mismatch repair pro 99.6 1.3E-16 4.3E-21 184.8 5.6 154 340-541 640-804 (918)
122 1zp6_A Hypothetical protein AT 99.6 1.2E-17 4E-22 159.4 -5.1 160 363-542 5-169 (191)
123 1nlf_A Regulatory protein REPA 99.6 1.5E-15 5.1E-20 154.2 9.9 151 363-536 26-184 (279)
124 1s96_A Guanylate kinase, GMP k 99.6 4.2E-16 1.4E-20 152.6 3.9 130 362-548 11-151 (219)
125 1wb9_A DNA mismatch repair pro 99.6 6E-16 2.1E-20 177.6 5.1 163 340-552 577-749 (800)
126 1nij_A Hypothetical protein YJ 99.6 5.8E-18 2E-22 175.4 -10.9 153 367-534 4-190 (318)
127 1n0w_A DNA repair protein RAD5 99.5 7E-15 2.4E-19 145.2 8.4 147 363-548 20-209 (243)
128 2qm8_A GTPase/ATPase; G protei 99.5 5.3E-17 1.8E-21 169.3 -9.8 171 341-521 30-259 (337)
129 3auy_A DNA double-strand break 99.5 6.6E-14 2.2E-18 148.0 10.1 74 473-546 279-359 (371)
130 1htw_A HI0065; nucleotide-bind 99.4 6.3E-16 2.2E-20 143.4 -8.1 86 344-435 11-96 (158)
131 1sxj_E Activator 1 40 kDa subu 99.4 7.6E-14 2.6E-18 146.0 5.8 139 368-536 37-177 (354)
132 2yhs_A FTSY, cell division pro 99.4 7.4E-14 2.5E-18 150.4 5.7 169 357-552 283-478 (503)
133 2oap_1 GSPE-2, type II secreti 99.4 7.8E-16 2.7E-20 168.6 -10.2 171 354-540 247-458 (511)
134 3e70_C DPA, signal recognition 99.4 6.6E-13 2.3E-17 137.4 8.9 163 363-552 125-308 (328)
135 2bdt_A BH3686; alpha-beta prot 99.4 1.7E-15 5.8E-20 144.3 -9.9 154 367-552 2-175 (189)
136 3lda_A DNA repair protein RAD5 99.4 9.3E-13 3.2E-17 139.8 9.0 146 363-549 174-364 (400)
137 2bbw_A Adenylate kinase 4, AK4 99.4 1.2E-14 4.1E-19 144.7 -5.7 157 366-548 26-219 (246)
138 2kjq_A DNAA-related protein; s 99.3 6.7E-13 2.3E-17 121.8 6.4 91 356-532 30-124 (149)
139 1p9r_A General secretion pathw 99.3 3.4E-15 1.2E-19 159.5 -11.1 137 343-497 146-314 (418)
140 2rcn_A Probable GTPase ENGC; Y 99.3 6.1E-13 2.1E-17 138.7 5.1 121 356-490 205-329 (358)
141 3ec2_A DNA replication protein 99.3 4.6E-12 1.6E-16 119.5 6.5 111 361-535 32-145 (180)
142 2x8a_A Nuclear valosin-contain 99.3 1.4E-14 4.8E-19 146.7 -11.9 144 354-518 33-191 (274)
143 3tr0_A Guanylate kinase, GMP k 99.2 7.9E-12 2.7E-16 120.0 7.1 137 361-500 1-171 (205)
144 1udx_A The GTP-binding protein 99.2 2.2E-12 7.6E-17 137.5 3.4 153 356-531 146-306 (416)
145 1cke_A CK, MSSA, protein (cyti 99.2 1.7E-13 5.8E-18 134.1 -5.0 127 366-503 4-151 (227)
146 1sq5_A Pantothenate kinase; P- 99.2 1.1E-13 3.9E-18 142.4 -7.2 138 338-507 35-199 (308)
147 2yv5_A YJEQ protein; hydrolase 99.2 4E-12 1.4E-16 130.4 1.2 113 363-487 161-300 (302)
148 1ls1_A Signal recognition part 99.1 4.2E-11 1.4E-15 122.3 7.6 142 341-531 77-220 (295)
149 3lnc_A Guanylate kinase, GMP k 99.1 5.1E-13 1.7E-17 131.5 -7.3 163 355-544 15-191 (231)
150 1u0l_A Probable GTPase ENGC; p 99.1 4.1E-11 1.4E-15 122.8 4.5 96 362-458 164-285 (301)
151 4e22_A Cytidylate kinase; P-lo 99.1 2.2E-11 7.4E-16 121.6 1.3 100 365-470 25-144 (252)
152 1vma_A Cell division protein F 99.1 1.9E-10 6.7E-15 117.7 8.3 97 360-503 97-197 (306)
153 2px0_A Flagellar biosynthesis 99.1 3.6E-10 1.2E-14 115.4 9.7 137 365-552 103-246 (296)
154 3euj_A Chromosome partition pr 99.0 1.7E-10 5.7E-15 124.7 5.3 79 342-424 8-95 (483)
155 3a00_A Guanylate kinase, GMP k 99.0 1.6E-10 5.5E-15 109.6 2.5 125 367-500 1-169 (186)
156 1iy2_A ATP-dependent metallopr 98.9 1.4E-12 4.8E-17 132.1 -13.7 136 342-502 51-195 (278)
157 2dr3_A UPF0273 protein PH0284; 98.9 8.5E-10 2.9E-14 108.6 6.3 168 353-547 8-196 (247)
158 1oix_A RAS-related protein RAB 98.9 2E-10 6.9E-15 109.2 0.8 140 369-520 31-189 (191)
159 1ixz_A ATP-dependent metallopr 98.9 4E-12 1.4E-16 126.8 -13.5 138 341-503 26-172 (254)
160 2dy1_A Elongation factor G; tr 98.9 1.5E-09 5.3E-14 122.8 6.0 131 361-535 3-138 (665)
161 2ius_A DNA translocase FTSK; n 98.8 5.6E-10 1.9E-14 121.5 1.7 159 359-534 159-343 (512)
162 1in4_A RUVB, holliday junction 98.8 5.8E-12 2E-16 131.1 -13.6 155 341-520 19-192 (334)
163 1qhl_A Protein (cell division 98.8 1.4E-10 4.8E-15 113.6 -3.7 74 340-422 9-91 (227)
164 1ni3_A YCHF GTPase, YCHF GTP-b 98.8 1.9E-11 6.4E-16 129.2 -11.0 162 363-552 16-204 (392)
165 3k1j_A LON protease, ATP-depen 98.8 2.8E-10 9.4E-15 127.8 -2.6 156 353-519 46-227 (604)
166 1t9h_A YLOQ, probable GTPase E 98.8 1.1E-09 3.8E-14 111.9 1.7 71 362-434 168-247 (307)
167 3ney_A 55 kDa erythrocyte memb 98.8 1.2E-09 4E-14 104.5 1.4 80 361-448 13-106 (197)
168 2r6a_A DNAB helicase, replicat 98.8 3.1E-08 1.1E-12 107.2 12.7 171 355-549 191-400 (454)
169 2qt1_A Nicotinamide riboside k 98.8 2.4E-09 8.3E-14 103.0 3.1 101 362-501 16-118 (207)
170 1svm_A Large T antigen; AAA+ f 98.7 5.4E-11 1.8E-15 125.2 -9.6 133 354-503 156-312 (377)
171 2zr9_A Protein RECA, recombina 98.7 3.1E-08 1.1E-12 103.3 10.9 137 363-550 57-232 (349)
172 1kgd_A CASK, peripheral plasma 98.7 1.9E-09 6.5E-14 101.6 -0.0 67 365-434 3-81 (180)
173 3nwj_A ATSK2; P loop, shikimat 98.7 1.9E-09 6.3E-14 107.3 -1.2 51 340-390 17-71 (250)
174 2f9l_A RAB11B, member RAS onco 98.6 1.4E-08 4.6E-13 96.9 3.7 139 369-520 7-165 (199)
175 3uie_A Adenylyl-sulfate kinase 98.5 3.9E-08 1.3E-12 94.1 4.7 60 345-405 4-65 (200)
176 2ce7_A Cell division protein F 98.5 1.1E-07 3.8E-12 102.9 8.6 125 354-546 38-184 (476)
177 4eun_A Thermoresistant glucoki 98.5 2E-08 6.7E-13 96.2 -0.1 60 361-424 23-82 (200)
178 3ice_A Transcription terminati 98.5 2.2E-08 7.5E-13 104.1 0.1 54 338-391 131-198 (422)
179 2qtf_A Protein HFLX, GTP-bindi 98.4 9.7E-08 3.3E-12 100.2 4.4 141 369-521 181-352 (364)
180 2j41_A Guanylate kinase; GMP, 98.4 6.7E-08 2.3E-12 92.4 2.5 62 362-426 1-63 (207)
181 2dhr_A FTSH; AAA+ protein, hex 98.4 7.9E-09 2.7E-13 112.5 -4.7 138 342-504 42-188 (499)
182 1jjv_A Dephospho-COA kinase; P 98.3 2.6E-07 9E-12 88.5 4.6 127 369-548 4-133 (206)
183 1zu4_A FTSY; GTPase, signal re 98.3 1.6E-07 5.4E-12 96.8 3.0 67 356-422 94-171 (320)
184 2e87_A Hypothetical protein PH 98.3 9.5E-07 3.2E-11 92.4 8.3 62 473-535 230-294 (357)
185 3cr8_A Sulfate adenylyltranfer 98.3 2.8E-08 9.7E-13 109.5 -3.7 69 363-436 365-446 (552)
186 3vaa_A Shikimate kinase, SK; s 98.3 3.1E-07 1.1E-11 87.6 3.4 38 354-391 12-49 (199)
187 3t34_A Dynamin-related protein 98.3 8E-07 2.7E-11 93.1 6.5 41 355-398 25-68 (360)
188 3tau_A Guanylate kinase, GMP k 98.3 1.9E-07 6.4E-12 90.0 1.4 67 365-434 6-84 (208)
189 2z43_A DNA repair and recombin 98.2 8.8E-07 3E-11 91.4 5.9 27 363-389 103-129 (324)
190 2vp4_A Deoxynucleoside kinase; 98.2 5.6E-08 1.9E-12 95.2 -3.0 64 361-427 14-87 (230)
191 2eyu_A Twitching motility prot 98.2 4.3E-07 1.5E-11 90.8 2.8 59 482-546 88-146 (261)
192 3kta_A Chromosome segregation 98.2 4.7E-07 1.6E-11 84.8 1.7 66 358-424 18-90 (182)
193 2xau_A PRE-mRNA-splicing facto 98.2 2.6E-06 8.9E-11 97.9 8.2 65 474-538 190-257 (773)
194 4a1f_A DNAB helicase, replicat 98.1 4.5E-06 1.5E-10 86.3 9.0 106 356-506 35-141 (338)
195 3hr8_A Protein RECA; alpha and 98.1 2.9E-06 1E-10 88.3 6.3 59 363-424 57-117 (356)
196 3kl4_A SRP54, signal recogniti 98.0 1.3E-05 4.3E-10 85.6 9.4 40 366-405 96-136 (433)
197 2ffh_A Protein (FFH); SRP54, s 98.0 2.2E-05 7.7E-10 83.5 10.6 181 341-552 77-277 (425)
198 1uf9_A TT1252 protein; P-loop, 97.9 1.1E-06 3.7E-11 83.6 -0.4 33 367-403 8-40 (203)
199 1knq_A Gluconate kinase; ALFA/ 97.9 4.1E-06 1.4E-10 77.8 3.4 38 365-405 6-43 (175)
200 1fnn_A CDC6P, cell division co 97.9 2.6E-05 8.9E-10 81.6 9.9 44 491-535 124-171 (389)
201 1rz3_A Hypothetical protein rb 97.9 5.5E-06 1.9E-10 79.1 3.7 47 363-409 18-65 (201)
202 2pez_A Bifunctional 3'-phospho 97.9 2.2E-06 7.5E-11 80.1 0.2 41 365-405 3-45 (179)
203 1v5w_A DMC1, meiotic recombina 97.8 6.3E-06 2.1E-10 85.7 3.4 27 363-389 118-144 (343)
204 1ega_A Protein (GTP-binding pr 97.8 7E-06 2.4E-10 83.7 3.4 148 366-542 7-169 (301)
205 3b9p_A CG5977-PA, isoform A; A 97.8 6.7E-05 2.3E-09 75.7 10.2 70 477-546 98-187 (297)
206 1sxj_C Activator 1 40 kDa subu 97.8 5.2E-06 1.8E-10 86.0 1.5 43 353-395 30-75 (340)
207 3tqc_A Pantothenate kinase; bi 97.8 4.2E-06 1.4E-10 85.9 0.5 39 354-392 73-117 (321)
208 3r20_A Cytidylate kinase; stru 97.7 1.4E-05 4.7E-10 78.3 3.7 69 367-435 9-96 (233)
209 1f6b_A SAR1; gtpases, N-termin 97.7 7.9E-06 2.7E-10 77.6 1.4 57 347-404 6-71 (198)
210 3bh0_A DNAB-like replicative h 97.7 7.3E-05 2.5E-09 76.6 8.5 108 354-504 55-163 (315)
211 2qby_A CDC6 homolog 1, cell di 97.6 3.7E-05 1.3E-09 80.0 5.2 27 365-391 43-69 (386)
212 2z4s_A Chromosomal replication 97.6 8.4E-05 2.9E-09 79.8 7.6 44 490-533 191-237 (440)
213 1ypw_A Transitional endoplasmi 97.6 1.1E-05 3.7E-10 93.2 0.6 30 362-391 233-262 (806)
214 3lxx_A GTPase IMAP family memb 97.6 0.00034 1.1E-08 68.3 10.7 23 369-391 31-53 (239)
215 2qor_A Guanylate kinase; phosp 97.5 8.7E-06 3E-10 77.8 -0.9 68 363-433 8-87 (204)
216 1kag_A SKI, shikimate kinase I 97.5 4.1E-05 1.4E-09 70.6 3.3 33 366-401 3-35 (173)
217 1mky_A Probable GTP-binding pr 97.5 4E-05 1.4E-09 82.3 3.6 60 368-427 181-253 (439)
218 3m6a_A ATP-dependent protease 97.5 1.7E-05 5.9E-10 87.5 0.3 78 343-422 86-164 (543)
219 2p67_A LAO/AO transport system 97.4 2.6E-05 9E-10 80.9 1.2 52 354-405 43-95 (341)
220 1l8q_A Chromosomal replication 97.4 0.00015 5E-09 74.3 6.5 26 366-391 36-61 (324)
221 1m7g_A Adenylylsulfate kinase; 97.4 3.4E-05 1.2E-09 74.0 1.3 43 362-404 20-65 (211)
222 1lv7_A FTSH; alpha/beta domain 97.4 9.8E-05 3.4E-09 72.9 4.5 45 356-403 36-80 (257)
223 3llm_A ATP-dependent RNA helic 97.4 0.00039 1.3E-08 67.8 8.4 129 364-528 73-213 (235)
224 4eaq_A DTMP kinase, thymidylat 97.4 6.4E-05 2.2E-09 73.4 2.6 42 357-398 13-57 (229)
225 4fcw_A Chaperone protein CLPB; 97.3 0.00026 8.9E-09 71.7 7.2 30 367-396 47-77 (311)
226 2www_A Methylmalonic aciduria 97.3 9E-05 3.1E-09 77.1 3.4 42 365-406 72-114 (349)
227 1sxj_D Activator 1 41 kDa subu 97.3 7.8E-05 2.7E-09 76.9 2.5 43 492-535 133-175 (353)
228 1m2o_B GTP-binding protein SAR 97.3 0.00014 4.7E-09 68.3 4.0 33 356-389 13-45 (190)
229 3h4m_A Proteasome-activating n 97.3 0.00061 2.1E-08 68.1 8.9 27 364-390 48-74 (285)
230 2gj8_A MNME, tRNA modification 97.3 0.00017 5.9E-09 66.5 4.5 26 365-390 2-27 (172)
231 2w58_A DNAI, primosome compone 97.2 0.00022 7.4E-09 67.6 4.8 24 368-391 55-78 (202)
232 3bos_A Putative DNA replicatio 97.2 0.00019 6.5E-09 69.4 4.5 26 366-391 51-76 (242)
233 1y63_A LMAJ004144AAA protein; 97.2 0.00013 4.4E-09 68.4 3.0 32 359-390 2-33 (184)
234 3cf0_A Transitional endoplasmi 97.2 0.00075 2.6E-08 68.4 8.7 30 362-391 44-73 (301)
235 1u94_A RECA protein, recombina 97.2 0.0013 4.3E-08 68.5 10.2 49 352-401 46-99 (356)
236 4dcu_A GTP-binding protein ENG 97.2 0.00044 1.5E-08 74.5 6.7 58 477-537 87-145 (456)
237 3dm5_A SRP54, signal recogniti 97.1 0.0034 1.2E-07 66.9 12.9 34 366-399 99-133 (443)
238 1f2t_A RAD50 ABC-ATPase; DNA d 97.1 0.00027 9.3E-09 64.0 3.6 32 359-391 16-48 (149)
239 1njg_A DNA polymerase III subu 97.1 0.00074 2.5E-08 64.7 6.8 45 491-536 125-169 (250)
240 3t61_A Gluconokinase; PSI-biol 97.1 0.0002 6.7E-09 68.0 2.5 35 367-404 18-52 (202)
241 3n70_A Transport activator; si 97.1 0.0019 6.4E-08 57.9 8.8 40 492-532 76-115 (145)
242 1j8m_F SRP54, signal recogniti 97.0 0.00018 6.3E-09 73.0 1.6 61 342-406 76-138 (297)
243 2i1q_A DNA repair and recombin 97.0 0.00023 8E-09 72.9 2.4 27 363-389 94-120 (322)
244 2p5t_B PEZT; postsegregational 97.0 0.00018 6.3E-09 71.1 1.5 42 363-405 28-69 (253)
245 2yvu_A Probable adenylyl-sulfa 96.9 0.00043 1.5E-08 64.7 2.9 39 363-401 9-49 (186)
246 2qag_A Septin-2, protein NEDD5 96.9 0.0001 3.5E-09 77.0 -1.6 47 338-391 15-61 (361)
247 3lxw_A GTPase IMAP family memb 96.8 0.0017 5.8E-08 63.8 7.1 58 477-535 87-151 (247)
248 3syl_A Protein CBBX; photosynt 96.8 0.0062 2.1E-07 61.3 11.5 56 492-547 130-203 (309)
249 1np6_A Molybdopterin-guanine d 96.8 0.00055 1.9E-08 63.7 3.1 37 367-403 6-46 (174)
250 2chg_A Replication factor C sm 96.8 0.005 1.7E-07 58.0 9.9 44 491-535 101-144 (226)
251 1xwi_A SKD1 protein; VPS4B, AA 96.8 0.0093 3.2E-07 61.0 12.4 28 364-391 42-69 (322)
252 2q6t_A DNAB replication FORK h 96.8 0.0061 2.1E-07 65.3 11.4 37 355-391 188-224 (444)
253 2ewv_A Twitching motility prot 96.7 0.00057 1.9E-08 71.6 2.9 56 482-543 199-254 (372)
254 2if2_A Dephospho-COA kinase; a 96.7 0.00067 2.3E-08 64.2 2.9 22 369-390 3-24 (204)
255 3uk6_A RUVB-like 2; hexameric 96.7 0.0025 8.5E-08 66.1 7.5 38 365-402 68-106 (368)
256 2qz4_A Paraplegin; AAA+, SPG7, 96.7 0.0081 2.8E-07 58.8 10.7 26 365-390 37-62 (262)
257 1qhx_A CPT, protein (chloramph 96.6 0.001 3.5E-08 61.4 3.6 26 366-391 2-27 (178)
258 1xp8_A RECA protein, recombina 96.6 0.011 3.7E-07 61.6 11.7 27 363-389 70-96 (366)
259 3cm0_A Adenylate kinase; ATP-b 96.6 0.0008 2.8E-08 62.6 2.8 25 365-389 2-26 (186)
260 2dby_A GTP-binding protein; GD 96.6 0.00087 3E-08 70.0 3.3 59 369-456 3-61 (368)
261 2vhj_A Ntpase P4, P4; non- hyd 96.6 0.0031 1E-07 64.3 7.1 28 362-389 118-145 (331)
262 2b8t_A Thymidine kinase; deoxy 96.6 0.0046 1.6E-07 59.8 7.9 51 492-546 89-150 (223)
263 2wjg_A FEOB, ferrous iron tran 96.6 0.0013 4.5E-08 60.8 3.9 23 368-390 8-30 (188)
264 3kb2_A SPBC2 prophage-derived 96.5 0.0011 3.7E-08 60.6 3.1 22 369-390 3-24 (173)
265 3d8b_A Fidgetin-like protein 1 96.5 0.0089 3.1E-07 62.0 10.3 26 365-390 115-140 (357)
266 2wji_A Ferrous iron transport 96.5 0.0013 4.3E-08 60.0 3.2 24 368-391 4-27 (165)
267 2ga8_A Hypothetical 39.9 kDa p 96.5 0.0004 1.4E-08 71.7 -0.2 36 355-390 10-47 (359)
268 1gtv_A TMK, thymidylate kinase 96.5 0.0004 1.4E-08 66.2 -0.3 26 369-394 2-27 (214)
269 3qks_A DNA double-strand break 96.5 0.0014 5E-08 62.4 3.6 29 359-388 16-44 (203)
270 3trf_A Shikimate kinase, SK; a 96.5 0.0013 4.5E-08 61.1 3.3 25 366-390 4-28 (185)
271 2zej_A Dardarin, leucine-rich 96.5 0.0014 4.7E-08 60.9 3.2 23 369-391 4-26 (184)
272 2v1u_A Cell division control p 96.4 0.0012 4E-08 68.6 3.0 27 365-391 42-68 (387)
273 1kht_A Adenylate kinase; phosp 96.4 0.0015 5.1E-08 60.7 3.4 30 366-395 2-31 (192)
274 3bgw_A DNAB-like replicative h 96.4 0.0059 2E-07 65.4 8.3 34 356-389 186-219 (444)
275 2v54_A DTMP kinase, thymidylat 96.4 0.0018 6.1E-08 61.0 3.6 27 365-391 2-28 (204)
276 3lw7_A Adenylate kinase relate 96.4 0.0016 5.5E-08 59.3 3.1 19 369-387 3-21 (179)
277 1ko7_A HPR kinase/phosphatase; 96.4 0.0019 6.4E-08 65.7 3.8 34 355-389 133-166 (314)
278 4ag6_A VIRB4 ATPase, type IV s 96.3 0.0019 6.6E-08 67.9 4.0 58 491-548 261-335 (392)
279 2rhm_A Putative kinase; P-loop 96.3 0.0017 5.7E-08 60.6 3.1 26 365-390 3-28 (193)
280 2zan_A Vacuolar protein sortin 96.3 0.013 4.5E-07 62.7 10.6 27 365-391 165-191 (444)
281 1q3t_A Cytidylate kinase; nucl 96.3 0.0018 6.2E-08 63.0 3.5 26 364-389 13-38 (236)
282 2ohf_A Protein OLA1, GTP-bindi 96.3 0.0017 5.8E-08 68.2 3.2 40 363-402 18-69 (396)
283 1gvn_B Zeta; postsegregational 96.3 0.0022 7.4E-08 64.6 3.9 36 365-401 31-66 (287)
284 2plr_A DTMP kinase, probable t 96.3 0.0018 6.1E-08 61.3 3.1 30 366-395 3-32 (213)
285 1ex7_A Guanylate kinase; subst 96.3 0.0017 5.7E-08 61.1 2.7 59 370-433 4-76 (186)
286 2jaq_A Deoxyguanosine kinase; 96.3 0.0018 6.3E-08 60.8 3.0 22 369-390 2-23 (205)
287 1vht_A Dephospho-COA kinase; s 96.2 0.0021 7E-08 61.6 3.3 32 366-401 3-34 (218)
288 2c95_A Adenylate kinase 1; tra 96.2 0.0023 7.8E-08 59.8 3.5 26 365-390 7-32 (196)
289 2wwf_A Thymidilate kinase, put 96.2 0.0024 8.4E-08 60.5 3.6 27 365-391 8-34 (212)
290 1lw7_A Transcriptional regulat 96.2 0.00016 5.4E-09 75.6 -5.3 73 474-546 258-342 (365)
291 3iij_A Coilin-interacting nucl 96.2 0.0023 7.8E-08 59.2 3.2 25 365-389 9-33 (180)
292 3t15_A Ribulose bisphosphate c 96.2 0.0077 2.6E-07 60.7 7.3 26 365-390 34-59 (293)
293 1nn5_A Similar to deoxythymidy 96.1 0.0027 9.4E-08 60.2 3.6 28 364-391 6-33 (215)
294 2bwj_A Adenylate kinase 5; pho 96.0 0.0023 8E-08 59.9 2.4 28 364-391 9-36 (199)
295 1via_A Shikimate kinase; struc 96.0 0.0026 8.9E-08 58.6 2.6 22 369-390 6-27 (175)
296 1xjc_A MOBB protein homolog; s 96.0 0.0023 7.9E-08 59.2 2.1 35 368-402 5-43 (169)
297 2ze6_A Isopentenyl transferase 96.0 0.0028 9.6E-08 62.5 2.9 22 369-390 3-24 (253)
298 3zvl_A Bifunctional polynucleo 96.0 0.035 1.2E-06 58.8 11.6 26 364-389 255-280 (416)
299 1ly1_A Polynucleotide kinase; 96.0 0.0031 1.1E-07 57.9 3.0 31 368-400 3-33 (181)
300 2r8r_A Sensor protein; KDPD, P 96.0 0.0021 7.1E-08 62.2 1.8 43 489-531 81-125 (228)
301 2qp9_X Vacuolar protein sortin 96.0 0.021 7.2E-07 59.1 9.6 26 365-390 82-107 (355)
302 2z0h_A DTMP kinase, thymidylat 95.9 0.0026 8.8E-08 59.5 2.2 27 369-395 2-28 (197)
303 1tev_A UMP-CMP kinase; ploop, 95.9 0.0037 1.3E-07 58.1 3.2 25 366-390 2-26 (196)
304 3co5_A Putative two-component 95.9 0.016 5.6E-07 51.5 7.3 40 492-532 75-115 (143)
305 1nks_A Adenylate kinase; therm 95.9 0.0038 1.3E-07 58.0 3.1 24 369-392 3-26 (194)
306 2vli_A Antibiotic resistance p 95.9 0.0031 1.1E-07 58.3 2.4 26 365-390 3-28 (183)
307 2pbr_A DTMP kinase, thymidylat 95.9 0.003 1E-07 58.8 2.3 28 369-396 2-29 (195)
308 4a82_A Cystic fibrosis transme 95.8 1.6 5.6E-05 47.9 24.6 101 20-124 10-114 (578)
309 3q72_A GTP-binding protein RAD 95.8 0.0046 1.6E-07 55.7 3.1 22 369-390 4-25 (166)
310 3pxi_A Negative regulator of g 95.8 0.018 6.3E-07 65.9 8.9 23 369-391 523-545 (758)
311 3ihw_A Centg3; RAS, centaurin, 95.8 0.007 2.4E-07 56.1 4.5 21 369-389 22-42 (184)
312 1aky_A Adenylate kinase; ATP:A 95.7 0.0053 1.8E-07 58.8 3.6 27 365-391 2-28 (220)
313 3fb4_A Adenylate kinase; psych 95.7 0.0048 1.6E-07 58.8 3.2 21 369-389 2-22 (216)
314 1z2a_A RAS-related protein RAB 95.7 0.0048 1.6E-07 55.5 3.0 21 369-389 7-27 (168)
315 1zd8_A GTP:AMP phosphotransfer 95.7 0.0051 1.8E-07 59.3 3.4 26 365-390 5-30 (227)
316 2cdn_A Adenylate kinase; phosp 95.7 0.0057 1.9E-07 57.6 3.5 26 366-391 19-44 (201)
317 1zak_A Adenylate kinase; ATP:A 95.6 0.0051 1.8E-07 59.0 3.1 26 366-391 4-29 (222)
318 1ukz_A Uridylate kinase; trans 95.6 0.0058 2E-07 57.6 3.4 25 366-390 14-38 (203)
319 2qby_B CDC6 homolog 3, cell di 95.6 0.012 4.1E-07 61.0 6.1 25 366-390 44-68 (384)
320 1a7j_A Phosphoribulokinase; tr 95.6 0.0035 1.2E-07 63.2 1.9 26 366-391 4-29 (290)
321 2iyv_A Shikimate kinase, SK; t 95.6 0.005 1.7E-07 57.0 2.9 23 368-390 3-25 (184)
322 1zuh_A Shikimate kinase; alpha 95.6 0.0059 2E-07 55.7 3.3 23 367-389 7-29 (168)
323 2nzj_A GTP-binding protein REM 95.6 0.0058 2E-07 55.4 3.2 22 369-390 6-27 (175)
324 2erx_A GTP-binding protein DI- 95.6 0.0059 2E-07 55.0 3.2 21 369-389 5-25 (172)
325 3pfi_A Holliday junction ATP-d 95.6 0.06 2E-06 54.8 11.2 23 368-390 56-78 (338)
326 2grj_A Dephospho-COA kinase; T 95.6 0.0057 2E-07 57.7 3.2 23 368-390 13-35 (192)
327 3q85_A GTP-binding protein REM 95.6 0.006 2.1E-07 55.0 3.2 22 369-390 4-25 (169)
328 1kao_A RAP2A; GTP-binding prot 95.6 0.0056 1.9E-07 54.8 3.0 21 369-389 5-25 (167)
329 2ce2_X GTPase HRAS; signaling 95.6 0.0056 1.9E-07 54.6 3.0 21 369-389 5-25 (166)
330 3dl0_A Adenylate kinase; phosp 95.6 0.0057 2E-07 58.3 3.2 22 369-390 2-23 (216)
331 3a4m_A L-seryl-tRNA(SEC) kinas 95.6 0.005 1.7E-07 60.9 2.8 27 365-391 2-28 (260)
332 3ake_A Cytidylate kinase; CMP 95.6 0.0055 1.9E-07 57.7 3.0 22 369-390 4-25 (208)
333 1e6c_A Shikimate kinase; phosp 95.6 0.0054 1.9E-07 56.0 2.8 23 368-390 3-25 (173)
334 3k53_A Ferrous iron transport 95.6 0.0056 1.9E-07 60.8 3.1 22 369-390 5-26 (271)
335 2pt5_A Shikimate kinase, SK; a 95.6 0.0061 2.1E-07 55.4 3.1 22 369-390 2-23 (168)
336 2ged_A SR-beta, signal recogni 95.6 0.0057 2E-07 56.7 3.0 25 366-390 47-71 (193)
337 1u8z_A RAS-related protein RAL 95.5 0.0061 2.1E-07 54.6 3.0 21 369-389 6-26 (168)
338 3t5d_A Septin-7; GTP-binding p 95.5 0.0059 2E-07 60.8 3.1 22 369-390 10-31 (274)
339 1g16_A RAS-related protein SEC 95.5 0.0061 2.1E-07 54.9 3.0 21 369-389 5-25 (170)
340 2dyk_A GTP-binding protein; GT 95.5 0.0062 2.1E-07 54.4 3.0 22 369-390 3-24 (161)
341 1qf9_A UMP/CMP kinase, protein 95.5 0.0068 2.3E-07 56.2 3.3 24 367-390 6-29 (194)
342 1c1y_A RAS-related protein RAP 95.5 0.0063 2.2E-07 54.6 3.0 21 369-389 5-25 (167)
343 1jr3_A DNA polymerase III subu 95.5 0.03 1E-06 57.7 8.5 43 492-535 119-161 (373)
344 1svi_A GTP-binding protein YSX 95.5 0.0066 2.2E-07 56.4 3.1 24 366-389 22-45 (195)
345 2j37_W Signal recognition part 95.5 0.04 1.4E-06 59.7 9.7 27 366-392 100-126 (504)
346 1z0j_A RAB-22, RAS-related pro 95.5 0.0066 2.2E-07 54.7 3.0 22 369-390 8-29 (170)
347 2lkc_A Translation initiation 95.5 0.0082 2.8E-07 54.6 3.7 25 365-389 6-30 (178)
348 1z08_A RAS-related protein RAB 95.5 0.0066 2.3E-07 54.7 3.0 21 369-389 8-28 (170)
349 1ek0_A Protein (GTP-binding pr 95.5 0.0068 2.3E-07 54.5 3.0 21 369-389 5-25 (170)
350 3tw8_B RAS-related protein RAB 95.5 0.0069 2.4E-07 55.1 3.1 21 369-389 11-31 (181)
351 2fn4_A P23, RAS-related protei 95.4 0.0067 2.3E-07 55.3 2.9 22 369-390 11-32 (181)
352 3pqc_A Probable GTP-binding pr 95.4 0.007 2.4E-07 55.9 3.1 23 368-390 24-46 (195)
353 1ky3_A GTP-binding protein YPT 95.4 0.0068 2.3E-07 55.2 3.0 21 369-389 10-30 (182)
354 1wms_A RAB-9, RAB9, RAS-relate 95.4 0.007 2.4E-07 55.1 3.0 21 369-389 9-29 (177)
355 1uj2_A Uridine-cytidine kinase 95.4 0.007 2.4E-07 59.4 3.2 22 368-389 23-44 (252)
356 3tlx_A Adenylate kinase 2; str 95.4 0.0075 2.6E-07 59.0 3.4 25 366-390 28-52 (243)
357 2qmh_A HPR kinase/phosphorylas 95.4 0.01 3.5E-07 56.1 4.1 33 356-389 24-56 (205)
358 1fzq_A ADP-ribosylation factor 95.4 0.0077 2.6E-07 55.6 3.1 24 367-390 16-39 (181)
359 1r2q_A RAS-related protein RAB 95.4 0.0076 2.6E-07 54.2 3.0 21 369-389 8-28 (170)
360 2f6r_A COA synthase, bifunctio 95.3 0.008 2.7E-07 60.2 3.3 23 367-389 75-97 (281)
361 2cxx_A Probable GTP-binding pr 95.3 0.0082 2.8E-07 55.3 3.1 22 369-390 3-24 (190)
362 4dsu_A GTPase KRAS, isoform 2B 95.3 0.0079 2.7E-07 55.3 3.0 21 369-389 6-26 (189)
363 3a8t_A Adenylate isopentenyltr 95.3 0.0085 2.9E-07 61.4 3.5 27 365-391 38-64 (339)
364 1sxj_B Activator 1 37 kDa subu 95.3 0.037 1.3E-06 55.6 8.3 43 492-535 107-149 (323)
365 2oil_A CATX-8, RAS-related pro 95.3 0.0081 2.8E-07 55.8 3.0 21 369-389 27-47 (193)
366 3b1v_A Ferrous iron uptake tra 95.3 0.0084 2.9E-07 59.8 3.2 23 368-390 4-26 (272)
367 3auy_A DNA double-strand break 95.3 0.01 3.5E-07 61.9 4.0 30 358-388 17-46 (371)
368 3clv_A RAB5 protein, putative; 95.3 0.0083 2.8E-07 55.6 3.0 23 368-390 8-30 (208)
369 3bc1_A RAS-related protein RAB 95.3 0.0084 2.9E-07 55.2 3.0 21 369-389 13-33 (195)
370 1r8s_A ADP-ribosylation factor 95.3 0.0087 3E-07 53.7 3.0 21 369-389 2-22 (164)
371 1jal_A YCHF protein; nucleotid 95.2 0.012 4.1E-07 61.1 4.3 23 367-389 2-24 (363)
372 3b5x_A Lipid A export ATP-bind 95.2 4.6 0.00016 44.3 34.1 47 74-124 72-118 (582)
373 2y8e_A RAB-protein 6, GH09086P 95.2 0.0088 3E-07 54.3 3.0 21 369-389 16-36 (179)
374 1hqc_A RUVB; extended AAA-ATPa 95.2 0.051 1.7E-06 54.9 9.0 25 366-390 37-61 (324)
375 2hxs_A RAB-26, RAS-related pro 95.2 0.0097 3.3E-07 54.1 3.2 21 369-389 8-28 (178)
376 1upt_A ARL1, ADP-ribosylation 95.2 0.0092 3.1E-07 53.8 3.0 24 366-389 6-29 (171)
377 1moz_A ARL1, ADP-ribosylation 95.2 0.008 2.8E-07 55.0 2.6 24 366-389 17-40 (183)
378 3cbq_A GTP-binding protein REM 95.2 0.009 3.1E-07 56.0 2.9 22 369-390 25-46 (195)
379 2g6b_A RAS-related protein RAB 95.2 0.0094 3.2E-07 54.3 3.0 21 369-389 12-32 (180)
380 3b60_A Lipid A export ATP-bind 95.2 4.8 0.00016 44.2 32.8 52 74-129 72-123 (582)
381 2xtp_A GTPase IMAP family memb 95.1 0.0096 3.3E-07 58.5 3.1 23 368-390 23-45 (260)
382 3be4_A Adenylate kinase; malar 95.1 0.01 3.6E-07 56.7 3.3 26 366-391 4-29 (217)
383 3t1o_A Gliding protein MGLA; G 95.1 0.0099 3.4E-07 55.0 3.0 23 369-391 16-38 (198)
384 3con_A GTPase NRAS; structural 95.1 0.01 3.5E-07 54.9 3.0 21 369-389 23-43 (190)
385 1wf3_A GTP-binding protein; GT 95.1 0.01 3.5E-07 60.1 3.2 22 369-390 9-30 (301)
386 1z0f_A RAB14, member RAS oncog 95.1 0.01 3.5E-07 53.8 3.0 21 369-389 17-37 (179)
387 3iby_A Ferrous iron transport 95.1 0.01 3.6E-07 58.5 3.2 22 369-390 3-24 (256)
388 3cmw_A Protein RECA, recombina 95.1 0.065 2.2E-06 65.8 10.7 28 364-391 729-756 (1706)
389 2efe_B Small GTP-binding prote 95.1 0.01 3.5E-07 54.1 3.0 21 369-389 14-34 (181)
390 4edh_A DTMP kinase, thymidylat 95.0 0.0099 3.4E-07 57.0 2.8 31 365-395 4-34 (213)
391 2a9k_A RAS-related protein RAL 95.0 0.011 3.7E-07 54.1 3.0 21 369-389 20-40 (187)
392 3qf4_B Uncharacterized ABC tra 95.0 5.4 0.00018 44.0 30.5 61 65-129 75-135 (598)
393 2bme_A RAB4A, RAS-related prot 95.0 0.011 3.7E-07 54.3 3.0 21 369-389 12-32 (186)
394 2gf9_A RAS-related protein RAB 95.0 0.012 4E-07 54.5 3.0 21 369-389 24-44 (189)
395 3kkq_A RAS-related protein M-R 94.9 0.012 4E-07 54.0 3.0 21 369-389 20-40 (183)
396 1e4v_A Adenylate kinase; trans 94.9 0.012 4.1E-07 56.1 3.1 22 369-390 2-23 (214)
397 2fg5_A RAB-22B, RAS-related pr 94.9 0.011 3.9E-07 54.8 2.9 21 369-389 25-45 (192)
398 2bov_A RAla, RAS-related prote 94.9 0.012 4E-07 55.0 3.0 21 369-389 16-36 (206)
399 1ksh_A ARF-like protein 2; sma 94.9 0.013 4.5E-07 53.9 3.2 25 365-389 16-40 (186)
400 2gf0_A GTP-binding protein DI- 94.9 0.012 4E-07 54.7 2.9 22 368-389 9-30 (199)
401 2cjw_A GTP-binding protein GEM 94.9 0.012 4.1E-07 55.0 3.0 21 369-389 8-28 (192)
402 1vg8_A RAS-related protein RAB 94.9 0.012 4.1E-07 55.1 3.0 21 369-389 10-30 (207)
403 1m7b_A RND3/RHOE small GTP-bin 94.9 0.012 4.2E-07 54.2 3.0 21 369-389 9-29 (184)
404 2qu8_A Putative nucleolar GTP- 94.9 0.013 4.5E-07 56.2 3.2 22 368-389 30-51 (228)
405 3d3q_A TRNA delta(2)-isopenten 94.9 0.012 4.2E-07 60.4 3.2 24 368-391 8-31 (340)
406 3oes_A GTPase rhebl1; small GT 94.9 0.012 4.2E-07 55.1 3.0 23 367-389 24-46 (201)
407 2il1_A RAB12; G-protein, GDP, 94.9 0.013 4.6E-07 54.4 3.2 21 369-389 28-48 (192)
408 3iev_A GTP-binding protein ERA 94.9 0.013 4.3E-07 59.5 3.2 23 368-390 11-33 (308)
409 1zbd_A Rabphilin-3A; G protein 94.9 0.014 4.7E-07 54.6 3.2 21 369-389 10-30 (203)
410 3tkl_A RAS-related protein RAB 94.8 0.013 4.4E-07 54.3 3.0 21 369-389 18-38 (196)
411 3exa_A TRNA delta(2)-isopenten 94.8 0.014 4.6E-07 59.3 3.3 25 367-391 3-27 (322)
412 1z06_A RAS-related protein RAB 94.8 0.013 4.4E-07 54.2 3.0 21 369-389 22-42 (189)
413 4dhe_A Probable GTP-binding pr 94.8 0.0072 2.5E-07 57.5 1.2 24 367-390 29-52 (223)
414 1nrj_B SR-beta, signal recogni 94.8 0.013 4.4E-07 55.6 3.0 23 368-390 13-35 (218)
415 1iqp_A RFCS; clamp loader, ext 94.8 0.059 2E-06 54.2 8.1 42 492-534 110-151 (327)
416 1mh1_A RAC1; GTP-binding, GTPa 94.8 0.013 4.6E-07 53.5 3.0 21 369-389 7-27 (186)
417 3u61_B DNA polymerase accessor 94.8 0.035 1.2E-06 56.3 6.4 44 492-536 105-149 (324)
418 3lv8_A DTMP kinase, thymidylat 94.8 0.011 3.8E-07 57.7 2.5 27 366-392 26-52 (236)
419 2h57_A ADP-ribosylation factor 94.8 0.013 4.4E-07 54.2 2.9 23 368-390 22-44 (190)
420 3t5g_A GTP-binding protein RHE 94.8 0.013 4.6E-07 53.5 3.0 21 369-389 8-28 (181)
421 3i8s_A Ferrous iron transport 94.8 0.014 4.6E-07 58.3 3.2 22 369-390 5-26 (274)
422 3dz8_A RAS-related protein RAB 94.8 0.013 4.6E-07 54.3 3.0 21 369-389 25-45 (191)
423 2o52_A RAS-related protein RAB 94.8 0.015 5.1E-07 54.6 3.2 21 369-389 27-47 (200)
424 3tqf_A HPR(Ser) kinase; transf 94.7 0.02 7E-07 52.8 3.9 27 362-388 11-37 (181)
425 2ew1_A RAS-related protein RAB 94.7 0.014 4.8E-07 55.1 3.0 21 369-389 28-48 (201)
426 2a5j_A RAS-related protein RAB 94.7 0.015 5E-07 54.0 3.0 21 369-389 23-43 (191)
427 3bwd_D RAC-like GTP-binding pr 94.7 0.017 5.8E-07 52.7 3.4 24 366-389 7-30 (182)
428 2xb4_A Adenylate kinase; ATP-b 94.7 0.015 5E-07 56.0 3.1 23 369-391 2-24 (223)
429 2h92_A Cytidylate kinase; ross 94.7 0.013 4.4E-07 55.9 2.6 24 367-390 3-26 (219)
430 2h17_A ADP-ribosylation factor 94.7 0.014 4.9E-07 53.5 2.9 21 369-389 23-43 (181)
431 4bas_A ADP-ribosylation factor 94.7 0.016 5.3E-07 53.9 3.1 23 367-389 17-39 (199)
432 2fv8_A H6, RHO-related GTP-bin 94.7 0.014 4.9E-07 54.9 2.9 23 367-389 25-47 (207)
433 1zj6_A ADP-ribosylation factor 94.7 0.016 5.5E-07 53.5 3.2 24 366-389 15-38 (187)
434 1ak2_A Adenylate kinase isoenz 94.7 0.018 6.1E-07 55.7 3.6 26 366-391 15-40 (233)
435 2bcg_Y Protein YP2, GTP-bindin 94.7 0.015 5E-07 54.6 3.0 21 369-389 10-30 (206)
436 4tmk_A Protein (thymidylate ki 94.7 0.013 4.3E-07 56.3 2.5 30 366-395 2-31 (213)
437 3reg_A RHO-like small GTPase; 94.6 0.016 5.3E-07 53.9 3.0 21 369-389 25-45 (194)
438 3def_A T7I23.11 protein; chlor 94.6 0.016 5.4E-07 57.3 3.2 22 369-390 38-59 (262)
439 3cph_A RAS-related protein SEC 94.6 0.016 5.3E-07 54.6 3.0 23 367-389 20-42 (213)
440 1h65_A Chloroplast outer envel 94.6 0.016 5.5E-07 57.4 3.2 21 369-389 41-61 (270)
441 3a1s_A Iron(II) transport prot 94.6 0.016 5.6E-07 57.1 3.2 22 369-390 7-28 (258)
442 3tmk_A Thymidylate kinase; pho 94.6 0.021 7.1E-07 54.9 3.8 28 365-392 3-30 (216)
443 1zd9_A ADP-ribosylation factor 94.6 0.016 5.6E-07 53.6 3.0 21 369-389 24-44 (188)
444 2atv_A RERG, RAS-like estrogen 94.6 0.016 5.5E-07 53.9 3.0 23 367-389 28-50 (196)
445 2p5s_A RAS and EF-hand domain 94.6 0.016 5.6E-07 54.1 3.0 24 366-389 27-50 (199)
446 1x3s_A RAS-related protein RAB 94.6 0.016 5.6E-07 53.4 3.0 21 369-389 17-37 (195)
447 1jwy_B Dynamin A GTPase domain 94.6 0.016 5.4E-07 58.6 3.1 23 369-391 26-48 (315)
448 2j1l_A RHO-related GTP-binding 94.6 0.017 5.9E-07 54.8 3.2 21 369-389 36-56 (214)
449 3v9p_A DTMP kinase, thymidylat 94.6 0.016 5.4E-07 56.2 2.9 27 365-391 23-49 (227)
450 1jbk_A CLPB protein; beta barr 94.5 0.019 6.5E-07 52.5 3.3 27 365-391 41-67 (195)
451 2aka_B Dynamin-1; fusion prote 94.5 0.017 5.7E-07 57.9 3.1 23 368-390 27-49 (299)
452 2wsm_A Hydrogenase expression/ 94.5 0.017 5.7E-07 55.0 2.9 23 368-390 31-53 (221)
453 1gwn_A RHO-related GTP-binding 94.5 0.017 5.9E-07 54.6 3.0 22 369-390 30-51 (205)
454 2yl4_A ATP-binding cassette SU 94.5 7.1 0.00024 42.9 31.4 49 72-124 67-115 (595)
455 3llu_A RAS-related GTP-binding 94.5 0.019 6.6E-07 53.5 3.2 22 368-389 21-42 (196)
456 2b6h_A ADP-ribosylation factor 94.5 0.019 6.4E-07 53.5 3.1 25 365-389 27-51 (192)
457 2f7s_A C25KG, RAS-related prot 94.5 0.019 6.5E-07 54.3 3.2 21 369-389 27-47 (217)
458 2q3h_A RAS homolog gene family 94.5 0.02 6.7E-07 53.5 3.2 23 367-389 20-42 (201)
459 2iwr_A Centaurin gamma 1; ANK 94.5 0.014 4.6E-07 53.3 2.1 22 368-389 8-29 (178)
460 3c5c_A RAS-like protein 12; GD 94.5 0.018 6.2E-07 53.3 3.0 21 369-389 23-43 (187)
461 2xxa_A Signal recognition part 94.4 0.29 9.9E-06 52.0 12.7 28 365-392 98-125 (433)
462 2gco_A H9, RHO-related GTP-bin 94.4 0.018 6.1E-07 54.0 3.0 21 369-389 27-47 (201)
463 3crm_A TRNA delta(2)-isopenten 94.4 0.019 6.4E-07 58.6 3.2 24 368-391 6-29 (323)
464 2fu5_C RAS-related protein RAB 94.4 0.013 4.4E-07 53.7 1.8 21 369-389 10-30 (183)
465 2fh5_B SR-beta, signal recogni 94.4 0.019 6.5E-07 54.2 3.0 23 367-389 7-29 (214)
466 3foz_A TRNA delta(2)-isopenten 94.3 0.021 7.2E-07 57.8 3.3 25 367-391 10-34 (316)
467 2x77_A ADP-ribosylation factor 94.3 0.018 6.1E-07 53.2 2.6 24 366-389 21-44 (189)
468 3ld9_A DTMP kinase, thymidylat 94.3 0.023 7.8E-07 54.9 3.4 28 365-392 19-46 (223)
469 1x6v_B Bifunctional 3'-phospho 94.3 0.015 5E-07 64.7 2.2 39 366-404 51-91 (630)
470 1p5z_B DCK, deoxycytidine kina 94.3 0.016 5.4E-07 57.2 2.3 28 364-391 21-48 (263)
471 2ocp_A DGK, deoxyguanosine kin 94.3 0.022 7.5E-07 55.3 3.3 26 366-391 1-26 (241)
472 2g3y_A GTP-binding protein GEM 94.3 0.022 7.6E-07 54.4 3.2 21 369-389 39-59 (211)
473 4djt_A GTP-binding nuclear pro 94.2 0.012 4.2E-07 55.7 1.2 21 369-389 13-33 (218)
474 2atx_A Small GTP binding prote 94.2 0.022 7.4E-07 52.8 2.9 21 369-389 20-40 (194)
475 1ltq_A Polynucleotide kinase; 94.1 0.023 7.8E-07 57.0 3.2 22 368-389 3-24 (301)
476 1qvr_A CLPB protein; coiled co 94.1 0.087 3E-06 61.1 8.4 25 368-392 589-613 (854)
477 1sky_E F1-ATPase, F1-ATP synth 94.1 0.02 7E-07 61.2 2.8 35 356-391 141-175 (473)
478 3umf_A Adenylate kinase; rossm 94.1 0.022 7.6E-07 54.7 2.7 29 363-391 25-53 (217)
479 3l0o_A Transcription terminati 94.1 0.011 3.6E-07 61.6 0.4 51 340-390 137-198 (427)
480 2hf9_A Probable hydrogenase ni 94.0 0.024 8.2E-07 54.0 3.0 22 368-389 39-60 (226)
481 3euj_A Chromosome partition pr 94.0 0.071 2.4E-06 57.4 6.9 77 466-546 371-464 (483)
482 4gzl_A RAS-related C3 botulinu 94.0 0.025 8.5E-07 53.2 3.0 23 367-389 30-52 (204)
483 3eph_A TRNA isopentenyltransfe 94.0 0.026 8.8E-07 59.2 3.2 25 367-391 2-26 (409)
484 3cnl_A YLQF, putative uncharac 93.9 0.027 9.4E-07 55.7 3.2 24 368-391 100-123 (262)
485 2hup_A RAS-related protein RAB 93.9 0.026 9.1E-07 52.9 2.9 21 369-389 31-51 (201)
486 1ypw_A Transitional endoplasmi 93.9 0.0029 9.9E-08 73.0 -4.6 45 360-405 504-548 (806)
487 2p65_A Hypothetical protein PF 93.8 0.024 8.1E-07 51.8 2.4 27 365-391 41-67 (187)
488 3qf4_A ABC transporter, ATP-bi 93.8 9.4 0.00032 41.9 34.1 56 65-124 61-116 (587)
489 1m8p_A Sulfate adenylyltransfe 93.8 0.022 7.6E-07 62.9 2.4 38 365-402 394-434 (573)
490 3r7w_A Gtpase1, GTP-binding pr 93.8 0.028 9.5E-07 57.0 2.9 25 365-389 1-25 (307)
491 2yc2_C IFT27, small RAB-relate 93.8 0.014 5E-07 54.4 0.8 22 369-390 22-43 (208)
492 3cpj_B GTP-binding protein YPT 93.7 0.03 1E-06 53.4 3.0 21 369-389 15-35 (223)
493 3q3j_B RHO-related GTP-binding 93.7 0.032 1.1E-06 53.0 3.0 22 368-389 28-49 (214)
494 1puj_A YLQF, conserved hypothe 93.6 0.036 1.2E-06 55.5 3.4 25 367-391 120-144 (282)
495 3ec1_A YQEH GTPase; atnos1, at 93.6 0.03 1E-06 58.3 2.9 25 366-390 161-185 (369)
496 2j0v_A RAC-like GTP-binding pr 93.5 0.034 1.2E-06 52.3 3.0 22 368-389 10-31 (212)
497 3h2y_A GTPase family protein; 93.5 0.031 1.1E-06 58.2 2.8 25 366-390 159-183 (368)
498 2orw_A Thymidine kinase; TMTK, 93.5 0.048 1.6E-06 50.8 3.9 52 492-547 76-138 (184)
499 2r62_A Cell division protease 93.4 0.011 3.8E-07 58.2 -0.7 32 357-390 36-67 (268)
500 2zts_A Putative uncharacterize 93.4 0.045 1.6E-06 52.8 3.8 25 364-388 27-51 (251)
No 1
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=100.00 E-value=1.5e-93 Score=864.54 Aligned_cols=499 Identities=21% Similarity=0.278 Sum_probs=426.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhhcccChhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1502 65 YIGIYFSLIVGLFVAGISRSTAFYSACMRCSKGIHKKMFEAVVYSPLAFFSTNPSGRILNRFSKDMGAVDEVLPKAMLDA 144 (597)
Q Consensus 65 ~i~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~~f~~~~sG~l~~rit~D~~~i~~~~~~~~~~~ 144 (597)
+++.+++++++..++++++.+++.++++++..++|.++|+|++++|++||+++++|++++|+++|++.+++++.+.+..+
T Consensus 138 ~~~~~~~l~i~~~~~~~~~~~~~~~~~~r~~~~lR~~~~~~ll~~~~~~fd~~~~G~l~sr~~~D~~~i~~~~~~~l~~~ 217 (1321)
T 4f4c_A 138 VVWSYAAMTVGMWAAGQITVTCYLYVAEQMNNRLRREFVKSILRQEISWFDTNHSGTLATKLFDNLERVKEGTGDKIGMA 217 (1321)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCHHHHHHTCCTTHHHHHHHHHHHHHHTSSHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566667777788889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHccHHHHHHhchHHHH
Q psy1502 145 AQGVMQVSGALIVSLSVNPLFSIPVLILLYLFWRLSKAYLRTSKSLKYLEGVTRSPVFTHLNACLHGLPTIRAHGAAKIL 224 (597)
Q Consensus 145 i~~~~~~i~~~i~l~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ika~~~e~~~ 224 (597)
+..+++++++++++++++|.+++++++.+++..++...+.+..++..+......+++.+.+.|.++|+++||+||.|+.+
T Consensus 218 ~~~~~~~i~~~i~~~~~~~~l~lv~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~ 297 (1321)
T 4f4c_A 218 FQYLSQFITGFIVAFTHSWQLTLVMLAVTPIQALCGFAIAKSMSTFAIRETLRYAKAGKVVEETISSIRTVVSLNGLRYE 297 (1321)
T ss_dssp HHHHHHHHHHHHHHHHHCHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhcccHHH
Confidence 99999999999999999999998888777777666666666666665555666677889999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHH---HhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1502 225 VEEFDYHQDLHSSTWHLFVYTNMGFAYLIDFLCLLYLSTI-LISFFFF---ADIGGKVGLAVTQTMTLMGVVQWAMRQAA 300 (597)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~---~~~~g~i~~~~~~~~~~~~~~~~~~~~~~ 300 (597)
.++|.+..++..+...+.............++..+..+++ .++.... .++.|.+.+++.++..+..++..+...+.
T Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~~~~~~~~~~~~~~~l~~~~~~~~ 377 (1321)
T 4f4c_A 298 LERYSTAVEEAKKAGVLKGLFLGISFGAMQASNFISFALAFYIGVGWVHDGSLNFGDMLTTFSSVMMGSMALGLAGPQLA 377 (1321)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999988776555433322222222222222222211111 1112121 23556677777777788888888888999
Q ss_pred HHHHHHHHHHHHHHhhccCCCCCCCCCCCCCCCCCCCcccEEEEeeEEEeCC--CCccceeeeEEEcCCcEEEEEcCCCC
Q psy1502 301 EVENHMISVKRLVEYTKLEPEGNLSPNYEDENEIWPVLGKIEFQNTNVRYLS--GPRVIKNLNITIHPKEKIGIVGRTGA 378 (597)
Q Consensus 301 ~~~~~~~s~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~f~nVsf~Y~~--~~~vL~~isl~I~~G~~vaIVG~SGs 378 (597)
.++.+.++++|++++++.+++.+.... ......+..|+|+|+||+|+||+ ++++|+|+||+|++|+++||||||||
T Consensus 378 ~~~~~~~s~~ri~~~l~~~~~~~~~~~--~~~~~~~~~g~I~~~nvsF~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGs 455 (1321)
T 4f4c_A 378 VLGTAQGAASGIYEVLDRKPVIDSSSK--AGRKDMKIKGDITVENVHFTYPSRPDVPILRGMNLRVNAGQTVALVGSSGC 455 (1321)
T ss_dssp HHHHHHHHHHHHHHHTTTSCCSSCSSS--CCCCCCCCCCCEEEEEEEECCSSSTTSCSEEEEEEEECTTCEEEEEECSSS
T ss_pred HHHHHHHHHHHHHHHHcCCcccccccc--ccccCCCCCCcEEEEEeeeeCCCCCCCceeeceEEeecCCcEEEEEecCCC
Confidence 999999999999999987665332211 11222344678999999999975 45899999999999999999999999
Q ss_pred CHHHHHHHHhcccc-CCceEEEcceeCCCCChHHHhcCcEEEeCCCCCCCccHHhhcccCC-CCChHHHHHHHHHhcHHH
Q psy1502 379 GKSSLIAAIFRLAE-VEGVIKIDDIDTEDVPLSKLRSNISIIPQDPVLFSGTLRKNLDPFE-KYPDYVLWTALQEVELKD 456 (597)
Q Consensus 379 GKSTL~~LL~~l~~-~~G~I~idg~di~~~~~~~lr~~I~~V~Q~~~LF~gTI~eNI~~~~-~~~~e~i~~a~~~a~l~~ 456 (597)
|||||+++|+|+|+ .+|+|++||+|+++++.++||++||||||+|+||+|||||||++|. ++++|++++||+.|++++
T Consensus 456 GKSTll~ll~~~~~~~~G~I~idG~~i~~~~~~~lr~~i~~v~Q~~~Lf~~TI~eNI~~g~~~~~~~~v~~a~~~a~l~~ 535 (1321)
T 4f4c_A 456 GKSTIISLLLRYYDVLKGKITIDGVDVRDINLEFLRKNVAVVSQEPALFNCTIEENISLGKEGITREEMVAACKMANAEK 535 (1321)
T ss_dssp CHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHHEEEECSSCCCCSEEHHHHHHTTCTTCCHHHHHHHHHHTTCHH
T ss_pred cHHHHHHHhccccccccCcccCCCccchhccHHHHhhcccccCCcceeeCCchhHHHhhhcccchHHHHHHHHHHccchh
Confidence 99999999999995 6899999999999999999999999999999999999999999985 689999999999999999
Q ss_pred HHHhc-CCCchhhhCCCCCCChhHHHHHHHHHHHccCCCEEEeecCCCCCCHHHHHHHHHHHHHhcCCcEEEEeccCchh
Q psy1502 457 MIMEG-AGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATANVDPKTDLLIQRTIRKKFADCTVLTIAHRLHT 535 (597)
Q Consensus 457 fI~~l-~GldT~vge~G~~LSGGQrQRIaIARAll~~p~ILILDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrlst 535 (597)
||+.+ +||||.|||+|.+||||||||||||||+++||+||||||||||||++||+.|+++|+++.++||+|+||||+++
T Consensus 536 ~i~~lp~G~~T~vGe~G~~LSGGQkQRiaiARAl~~~~~IliLDE~tSaLD~~te~~i~~~l~~~~~~~T~iiiaHrls~ 615 (1321)
T 4f4c_A 536 FIKTLPNGYNTLVGDRGTQLSGGQKQRIAIARALVRNPKILLLDEATSALDAESEGIVQQALDKAAKGRTTIIIAHRLST 615 (1321)
T ss_dssp HHHHSTTTTSSEESSSSCCCCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCTTTHHHHHHHHHHHHTTSEEEEECSCTTT
T ss_pred HHHcCCCCCccEecCCCCCCCHHHHHHHHHHHHHccCCCEEEEecccccCCHHHHHHHHHHHHHHhCCCEEEEEcccHHH
Confidence 99998 99999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhcCEEEEEeCCeEEE--------ecCchhHhhHhhh
Q psy1502 536 IMDSDKVLVMDSGVAVV--------SSFGFFFSKDLIE 565 (597)
Q Consensus 536 i~~~D~Iivl~~G~Ive--------~~~g~y~~l~~~~ 565 (597)
+++||+|+||++|+|+| +++|.|++++..+
T Consensus 616 i~~aD~Iivl~~G~ive~Gth~eL~~~~g~y~~l~~~q 653 (1321)
T 4f4c_A 616 IRNADLIISCKNGQVVEVGDHRALMAQQGLYYDLVTAQ 653 (1321)
T ss_dssp TTTCSEEEEEETTEEEEEECHHHHHTTTCHHHHHHHHH
T ss_pred HHhCCEEEEeeCCeeeccCCHHHHHHhhhHHHHHHHhh
Confidence 99999999999999999 6799999999754
No 2
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=100.00 E-value=1.4e-93 Score=864.92 Aligned_cols=502 Identities=19% Similarity=0.235 Sum_probs=396.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhhcc--cChhHHHHHHHHHHHHHHHHHHHH
Q psy1502 63 ESYIGIYFSLIVGLFVAGISRSTAFYSACMRCSKGIHKKMFEAVVYSPLAFFST--NPSGRILNRFSKDMGAVDEVLPKA 140 (597)
Q Consensus 63 ~~~i~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~~f~~--~~sG~l~~rit~D~~~i~~~~~~~ 140 (597)
..+.+.|+++.++..++.+++.++....+.++..++|.++|++++++|++||+. +++|++++|+++|++.++..+...
T Consensus 794 ~~~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~lr~~l~~~il~~~~~ffd~~~~~~G~i~~r~s~D~~~i~~~l~~~ 873 (1321)
T 4f4c_A 794 HFWALMFLVLAAAQGICSFLMTFFMGIASESLTRDLRNKLFRNVLSQHIGFFDSPQNASGKISTRLATDVPNLRTAIDFR 873 (1321)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCSSSTTSGGGCHHHHHHHHHTHHHHHHTTTSHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhccCCCChHHHHhcchhhHHHHHHHHHHH
Confidence 345566777777778888899999999999999999999999999999999985 789999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHccHHHHHHhch
Q psy1502 141 MLDAAQGVMQVSGALIVSLSVNPLFSIPVLILLYLFWRLSKAYLRTSKSLKYLEGVTRSPVFTHLNACLHGLPTIRAHGA 220 (597)
Q Consensus 141 ~~~~i~~~~~~i~~~i~l~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ika~~~ 220 (597)
+..++..++.++++++++++++|+++++++++++++++....+.+..+..........++....+.|+++|+++||+|+.
T Consensus 874 l~~~~~~~~~~i~~~~~~~~~~~~l~lv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~ 953 (1321)
T 4f4c_A 874 FSTVITTLVSMVAGIGLAFFYGWQMALLIIAILPIVAFGQYLRGRRFTGKNVKSASEFADSGKIAIEAIENVRTVQALAR 953 (1321)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHTSCCSSCSTTTSSHHHHHHHHHHHHHHTHHHHHHTTT
T ss_pred HHHHHHHhhhHHHHeeeehHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhccc
Confidence 99999999999999999999999999888877776665554443322211111122334556788999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH---H--hhhhHHHHHHHHHHHHHHHHHH
Q psy1502 221 AKILVEEFDYHQDLHSSTWHLFVYTNMGFAYLIDFLCLLYLST-ILISFFFF---A--DIGGKVGLAVTQTMTLMGVVQW 294 (597)
Q Consensus 221 e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~---~--~~~g~i~~~~~~~~~~~~~~~~ 294 (597)
|+++.++|.+..+...+...+......+...+...+..+...+ +.++.... . ...+.+..++.+......++..
T Consensus 954 e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 1033 (1321)
T 4f4c_A 954 EDTFYENFCEKLDIPHKEAIKEAFIQGLSYGCASSVLYLLNTCAYRMGLALIITDPPTMQPMRVLRVMYAITISTSTLGF 1033 (1321)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHTTSSSSCSSCHHHHHHHHHHHHTTTSSTTG
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhcCccccchHHHHHHHHHHHHHHHHHHH
Confidence 9999999998877655443332222221111111111111111 11111111 0 1111111112222222345556
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCCCCCCCCcccEEEEeeEEEeCCC--CccceeeeEEEcCCcEEEE
Q psy1502 295 AMRQAAEVENHMISVKRLVEYTKLEPEGNLSPNYEDENEIWPVLGKIEFQNTNVRYLSG--PRVIKNLNITIHPKEKIGI 372 (597)
Q Consensus 295 ~~~~~~~~~~~~~s~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~f~nVsf~Y~~~--~~vL~~isl~I~~G~~vaI 372 (597)
+...+..+..+..+++|++++++.+++.+... .+++.++..|+|+|+||+|+||++ .+||+||||+|+|||+|||
T Consensus 1034 ~~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~---~~~~~~~~~g~I~f~nVsf~Y~~~~~~~VL~~isl~I~~Ge~vaI 1110 (1321)
T 4f4c_A 1034 ATSYFPEYAKATFAGGIIFGMLRKISKIDSLS---LAGEKKKLYGKVIFKNVRFAYPERPEIEILKGLSFSVEPGQTLAL 1110 (1321)
T ss_dssp GGGHHHHHHHHHHHHHHHHHHHHCCCSSCTTC---CCSBCCCCCCCEEEEEEEECCTTSCSSCSEEEEEEEECTTCEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhCcccCCCcc---CCCCCCCCCCeEEEEEEEEeCCCCCCCccccceeEEECCCCEEEE
Confidence 66777888999999999999998766543222 233445677899999999999754 3799999999999999999
Q ss_pred EcCCCCCHHHHHHHHhcccc-CCceEEEcceeCCCCChHHHhcCcEEEeCCCCCCCccHHhhcccC---CCCChHHHHHH
Q psy1502 373 VGRTGAGKSSLIAAIFRLAE-VEGVIKIDDIDTEDVPLSKLRSNISIIPQDPVLFSGTLRKNLDPF---EKYPDYVLWTA 448 (597)
Q Consensus 373 VG~SGsGKSTL~~LL~~l~~-~~G~I~idg~di~~~~~~~lr~~I~~V~Q~~~LF~gTI~eNI~~~---~~~~~e~i~~a 448 (597)
|||||||||||+++|+|||+ ++|+|+|||+|++++++++||++|+||||||+||+|||||||++| ++++|+|+++|
T Consensus 1111 VG~SGsGKSTL~~lL~rl~~p~~G~I~iDG~di~~i~~~~lR~~i~~V~Qdp~LF~gTIreNI~~gld~~~~sd~ei~~A 1190 (1321)
T 4f4c_A 1111 VGPSGCGKSTVVALLERFYDTLGGEIFIDGSEIKTLNPEHTRSQIAIVSQEPTLFDCSIAENIIYGLDPSSVTMAQVEEA 1190 (1321)
T ss_dssp ECSTTSSTTSHHHHHTTSSCCSSSEEEETTEETTTBCHHHHHTTEEEECSSCCCCSEEHHHHHSSSSCTTTSCHHHHHHH
T ss_pred ECCCCChHHHHHHHHhcCccCCCCEEEECCEEhhhCCHHHHHhheEEECCCCEeeCccHHHHHhccCCCCCCCHHHHHHH
Confidence 99999999999999999995 689999999999999999999999999999999999999999987 36899999999
Q ss_pred HHHhcHHHHHHhc-CCCchhhhCCCCCCChhHHHHHHHHHHHccCCCEEEeecCCCCCCHHHHHHHHHHHHHhcCCcEEE
Q psy1502 449 LQEVELKDMIMEG-AGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATANVDPKTDLLIQRTIRKKFADCTVL 527 (597)
Q Consensus 449 ~~~a~l~~fI~~l-~GldT~vge~G~~LSGGQrQRIaIARAll~~p~ILILDEaTSaLD~~te~~I~~~l~~~~~~~TvI 527 (597)
|+.|+++|||+++ +||||.|||+|.+|||||||||||||||+|||+||||||||||||++||+.||++|++.+++||+|
T Consensus 1191 l~~a~l~~~I~~Lp~GldT~vge~G~~LSgGQrQriaiARAllr~~~ILiLDEaTSaLD~~tE~~Iq~~l~~~~~~~TvI 1270 (1321)
T 4f4c_A 1191 ARLANIHNFIAELPEGFETRVGDRGTQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEKVVQEALDRAREGRTCI 1270 (1321)
T ss_dssp HHHTTCHHHHHTSTTTTCSEETTTSCSSCHHHHHHHHHHHHHHSCCSEEEEESCCCSTTSHHHHHHHHHHTTTSSSSEEE
T ss_pred HHHhCChHHHHcCcCCCCCEecCCCcccCHHHHHHHHHHHHHHhCCCEEEEeCccccCCHHHHHHHHHHHHHHcCCCEEE
Confidence 9999999999998 999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeccCchhHhhcCEEEEEeCCeEEE--------ecCchhHhhHhhhcc
Q psy1502 528 TIAHRLHTIMDSDKVLVMDSGVAVV--------SSFGFFFSKDLIEGT 567 (597)
Q Consensus 528 ~IaHrlsti~~~D~Iivl~~G~Ive--------~~~g~y~~l~~~~~~ 567 (597)
+|||||+|+++||+|+|||+|+|+| +++|.|++||+.+..
T Consensus 1271 ~IAHRLsTi~~aD~I~Vld~G~IvE~Gth~eLl~~~g~y~~L~~~Q~~ 1318 (1321)
T 4f4c_A 1271 VIAHRLNTVMNADCIAVVSNGTIIEKGTHTQLMSEKGAYYKLTQKQMT 1318 (1321)
T ss_dssp EECSSSSTTTTCSEEEEESSSSEEEEECHHHHHHCC------------
T ss_pred EeccCHHHHHhCCEEEEEECCEEEEECCHHHHHhCCcHHHHHHHHHHh
Confidence 9999999999999999999999999 678999999986543
No 3
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=100.00 E-value=1.1e-87 Score=756.43 Aligned_cols=529 Identities=24% Similarity=0.326 Sum_probs=439.8
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Q psy1502 30 NDTAFVEMYGRSTFFKIVNNTINQHHHFHLLSTESYIGIYFSLIVGLFVAGISRSTAFYSACMRCSKGIHKKMFEAVVYS 109 (597)
Q Consensus 30 ~~~a~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~i~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~ 109 (597)
.+.+++.+..|.++..+++....... ......+++.++++.++..++.+++.++....+.++..++|.++|++++++
T Consensus 47 ~~~~~~~~~~p~~~~~~id~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~ 123 (598)
T 3qf4_B 47 TVSSILGVLSPYLIGKTIDVVFVPRR---FDLLPRYMLILGTIYALTSLLFWLQGKIMLTLSQDVVFRLRKELFEKLQRV 123 (598)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTTTTC---GGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHccCC---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Confidence 34456777778778888887654321 111233445555566666778888888889999999999999999999999
Q ss_pred CchhhcccChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1502 110 PLAFFSTNPSGRILNRFSKDMGAVDEVLPKAMLDAAQGVMQVSGALIVSLSVNPLFSIPVLILLYLFWRLSKAYLRTSKS 189 (597)
Q Consensus 110 ~~~~f~~~~sG~l~~rit~D~~~i~~~~~~~~~~~i~~~~~~i~~~i~l~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~ 189 (597)
|++||+++++|++++|+++|++.++.++...+..++.+++.++++++++++++|++++++++++++.+++...+.+..++
T Consensus 124 ~~~~~~~~~~G~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~l~l~~l~~~~l~~~~~~~~~~~~~~ 203 (598)
T 3qf4_B 124 PVGFFDRTPHGDIISRVINDVDNINNVLGNSIIQFFSGIVTLAGAVIMMFRVNVILSLVTLSIVPLTVLITQIVSSQTRK 203 (598)
T ss_dssp CTHHHHHSCHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHTTHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999988887777777776677666666
Q ss_pred HHHHHHHhccchHHHHHHHHccHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH
Q psy1502 190 LKYLEGVTRSPVFTHLNACLHGLPTIRAHGAAKILVEEFDYHQDLHSSTWHLFVYTNMGFAYLIDFLCLLYLSTI-LISF 268 (597)
Q Consensus 190 ~~~~~~~~~~~~~~~~~e~l~gi~~Ika~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 268 (597)
..+......+++.+.+.|.++|+++||+||.|+.+.++|++..++..+...+......+......++..+..+++ +++.
T Consensus 204 ~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 283 (598)
T 3qf4_B 204 YFYENQRVLGQLNGIIEEDISGLTVIKLFTREEKEMEKFDRVNESLRKVGTKAQIFSGVLPPLMNMVNNLGFALISGFGG 283 (598)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHcCHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 655556666778899999999999999999999999999988776655444333333333333333322222221 1222
Q ss_pred HHH---HhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCCCCCCCCcccEEEEe
Q psy1502 269 FFF---ADIGGKVGLAVTQTMTLMGVVQWAMRQAAEVENHMISVKRLVEYTKLEPEGNLSPNYEDENEIWPVLGKIEFQN 345 (597)
Q Consensus 269 ~~~---~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~f~n 345 (597)
+.. .++.|.+.+++.++..+..++..+...+..++.+..+++|+.++++.+++.+.+. ....++..++|+++|
T Consensus 284 ~l~~~g~ls~g~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~~----~~~~~~~~~~i~~~~ 359 (598)
T 3qf4_B 284 WLALKDIITVGTIATFIGYSRQFTRPLNELSNQFNMIQMALASAERIFEILDLEEEKDDPD----AVELREVRGEIEFKN 359 (598)
T ss_dssp HHGGGTSSCHHHHHHHHTTTTSSHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCCCCSS----CCCCCSCCCCEEEEE
T ss_pred HHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCC----CCCCCCCCCeEEEEE
Confidence 111 2345666666666667788889999999999999999999999998766532111 111223457899999
Q ss_pred eEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhcccc-CCceEEEcceeCCCCChHHHhcCcEEEeCCCC
Q psy1502 346 TNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAE-VEGVIKIDDIDTEDVPLSKLRSNISIIPQDPV 424 (597)
Q Consensus 346 Vsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~~-~~G~I~idg~di~~~~~~~lr~~I~~V~Q~~~ 424 (597)
|+|+|++++++|+|+||+|++||++|||||||||||||+++|+|+|+ ++|+|.+||+|+++++.+++|++|+||||+|+
T Consensus 360 v~~~y~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~i~~~~~~~~r~~i~~v~Q~~~ 439 (598)
T 3qf4_B 360 VWFSYDKKKPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDVDRGQILVDGIDIRKIKRSSLRSSIGIVLQDTI 439 (598)
T ss_dssp EECCSSSSSCSCCSEEEECCTTCEEEEECCTTSSTTHHHHHHTTSSCCSEEEEEETTEEGGGSCHHHHHHHEEEECTTCC
T ss_pred EEEECCCCCccccceEEEEcCCCEEEEECCCCCcHHHHHHHHhcCcCCCCeEEEECCEEhhhCCHHHHHhceEEEeCCCc
Confidence 99999766789999999999999999999999999999999999995 68999999999999999999999999999999
Q ss_pred CCCccHHhhcccCC-CCChHHHHHHHHHhcHHHHHHhc-CCCchhhhCCCCCCChhHHHHHHHHHHHccCCCEEEeecCC
Q psy1502 425 LFSGTLRKNLDPFE-KYPDYVLWTALQEVELKDMIMEG-AGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEAT 502 (597)
Q Consensus 425 LF~gTI~eNI~~~~-~~~~e~i~~a~~~a~l~~fI~~l-~GldT~vge~G~~LSGGQrQRIaIARAll~~p~ILILDEaT 502 (597)
+|++||+|||.++. +.++++++++++.++++++++.+ +||||.+||+|.+||||||||+||||||+++|+||||||||
T Consensus 440 lf~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGq~Qrv~iAral~~~p~illlDEpt 519 (598)
T 3qf4_B 440 LFSTTVKENLKYGNPGATDEEIKEAAKLTHSDHFIKHLPEGYETVLTDNGEDLSQGQRQLLAITRAFLANPKILILDEAT 519 (598)
T ss_dssp CCSSBHHHHHHSSSTTCCTTHHHHHTTTTTCHHHHHTSTTGGGCBCHHHHTTSCHHHHHHHHHHHHHHTCCSEEEECCCC
T ss_pred cccccHHHHHhcCCCCCCHHHHHHHHHHhCCHHHHHhccccccchhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEECCc
Confidence 99999999999874 57889999999999999999998 99999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHhcCCcEEEEeccCchhHhhcCEEEEEeCCeEEE--------ecCchhHhhHhhh
Q psy1502 503 ANVDPKTDLLIQRTIRKKFADCTVLTIAHRLHTIMDSDKVLVMDSGVAVV--------SSFGFFFSKDLIE 565 (597)
Q Consensus 503 SaLD~~te~~I~~~l~~~~~~~TvI~IaHrlsti~~~D~Iivl~~G~Ive--------~~~g~y~~l~~~~ 565 (597)
|+||+++|+.|++.|.++.+++|+|+||||+++++.||+|++|++|+|++ +++|.|++++..+
T Consensus 520 s~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~ 590 (598)
T 3qf4_B 520 SNVDTKTEKSIQAAMWKLMEGKTSIIIAHRLNTIKNADLIIVLRDGEIVEMGKHDELIQKRGFYYELFTSQ 590 (598)
T ss_dssp TTCCHHHHHHHHHHHHHHHTTSEEEEESCCTTHHHHCSEEEEECSSSEEECSCHHHHHHTTCHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHcCCEEEEEECCEEEEECCHHHHHhCCCHHHHHHHHH
Confidence 99999999999999999988999999999999999999999999999998 5678888888644
No 4
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=100.00 E-value=1e-86 Score=746.49 Aligned_cols=542 Identities=21% Similarity=0.270 Sum_probs=436.2
Q ss_pred hhHHHHHHHH----HhhHHHHHHHHHHHHHHHHHHhhhcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1502 18 TREEYRQFEI----LKNDTAFVEMYGRSTFFKIVNNTINQHHHFHLLSTESYIGIYFSLIVGLFVAGISRSTAFYSACMR 93 (597)
Q Consensus 18 ~~~~~~~~~~----~~~~~a~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~i~~~~~~~i~~~~~~~~~~~~~~~~~~~ 93 (597)
+...||...+ +..+.+++.+..|.++..+++........ .....+.+.++++.++..++.+++.++..+.+.+
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~id~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (587)
T 3qf4_A 17 YLKPYWIFAVLAPLFMVVEVICDLSQPTLLARIVDEGIARGDF---SLVLKTGILMLIVALIGAVGGIGCTVFASYASQN 93 (587)
T ss_dssp GTGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTCH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444554333 33445567777788888888876543210 1112223334444555566777788888889999
Q ss_pred HHHHHHHHHHHHHHcCCchhhcccChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1502 94 CSKGIHKKMFEAVVYSPLAFFSTNPSGRILNRFSKDMGAVDEVLPKAMLDAAQGVMQVSGALIVSLSVNPLFSIPVLILL 173 (597)
Q Consensus 94 ~~~~lr~~l~~~ll~~~~~~f~~~~sG~l~~rit~D~~~i~~~~~~~~~~~i~~~~~~i~~~i~l~~~~~~l~l~~~~~~ 173 (597)
+..++|.++|++++++|+.||+++++|++++|+++|++.+++++...+..++..++.++++++++++++|.+++++++++
T Consensus 94 ~~~~lr~~l~~~ll~~~~~~~~~~~~G~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~l~l~~l~~~ 173 (587)
T 3qf4_A 94 FGADLRRDLFRKVLSFSISNVNRFHTSSLITRLTNDVTQLQNLVMMLLRIVVRAPLLFVGGIVMAVSINVKLSSVLIFLI 173 (587)
T ss_dssp HHHHHHHHHHHHHHHCCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHCTTTTHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999988877777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHccHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1502 174 YLFWRLSKAYLRTSKSLKYLEGVTRSPVFTHLNACLHGLPTIRAHGAAKILVEEFDYHQDLHSSTWHLFVYTNMGFAYLI 253 (597)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ika~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (597)
++++++..++.+..++..+......+++.+.+.|.++|+++||+|+.|+++.++|.+..+...+................
T Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (587)
T 3qf4_A 174 PPIVLLFVWLTKKGNPLFRKIQESTDEVNRVVRENLLGVRVVRAFRREEYENENFRKANESLRRSIISAFSLIVFALPLF 253 (587)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 76666655666555555555555667788999999999999999999999999999887766554333222222222222
Q ss_pred HHHHHHHHH-HHHHHHHHH---HhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCC
Q psy1502 254 DFLCLLYLS-TILISFFFF---ADIGGKVGLAVTQTMTLMGVVQWAMRQAAEVENHMISVKRLVEYTKLEPEGNLSPNYE 329 (597)
Q Consensus 254 ~~~~~~~~~-~~~~~~~~~---~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ri~~~~~~~~~~~~~~~~~ 329 (597)
.++...... ++.++.... .++.|.+.+++.++..+..++..+...+..++++.++++|+.++++.+++.+....
T Consensus 254 ~~~~~~~~~~vl~~g~~~v~~g~lt~g~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~~~-- 331 (587)
T 3qf4_A 254 IFIVNMGMIAVLWFGGVLVRNNQMEIGSIMAYTNYLMQIMFSLMMIGNILNFIVRASASAKRVLEVLNEKPAIEEADN-- 331 (587)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSCCCCTT--
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCCCCC--
Confidence 222211111 111122111 23456677777777788888888888899999999999999999987654322111
Q ss_pred CCCCCCCCcccEEEEeeEEEeCC-CCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhcccc-CCceEEEcceeCCCC
Q psy1502 330 DENEIWPVLGKIEFQNTNVRYLS-GPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAE-VEGVIKIDDIDTEDV 407 (597)
Q Consensus 330 ~~~~~~~~~~~I~f~nVsf~Y~~-~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~~-~~G~I~idg~di~~~ 407 (597)
+...++..+.|+|+||+|+|++ .+++|+|+||+|++||++|||||||||||||+++|+|+|+ ++|+|.+||+|++++
T Consensus 332 -~~~~~~~~~~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~i~g~~i~~~ 410 (587)
T 3qf4_A 332 -ALALPNVEGSVSFENVEFRYFENTDPVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDPERGRVEVDELDVRTV 410 (587)
T ss_dssp -CBCCSCCCCCEEEEEEEECSSSSSCCSEEEEEEEECTTCEEEEECSSSSSHHHHHHTTTTSSCCSEEEEEESSSBGGGB
T ss_pred -ccccCCCCCcEEEEEEEEEcCCCCCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCCCcEEEECCEEcccC
Confidence 1111234578999999999964 5679999999999999999999999999999999999995 689999999999999
Q ss_pred ChHHHhcCcEEEeCCCCCCCccHHhhcccCC-CCChHHHHHHHHHhcHHHHHHhc-CCCchhhhCCCCCCChhHHHHHHH
Q psy1502 408 PLSKLRSNISIIPQDPVLFSGTLRKNLDPFE-KYPDYVLWTALQEVELKDMIMEG-AGLNMTVYEGGTNFSVGQRQLICL 485 (597)
Q Consensus 408 ~~~~lr~~I~~V~Q~~~LF~gTI~eNI~~~~-~~~~e~i~~a~~~a~l~~fI~~l-~GldT~vge~G~~LSGGQrQRIaI 485 (597)
+.+++|++|+||||+|++|++||+|||.++. +.++++++++++.++++++++.+ +|+||.+||+|.+||||||||++|
T Consensus 411 ~~~~~r~~i~~v~Q~~~lf~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~~~~~~~~~~LSgGqrQrv~l 490 (587)
T 3qf4_A 411 KLKDLRGHISAVPQETVLFSGTIKENLKWGREDATDDEIVEAAKIAQIHDFIISLPEGYDSRVERGGRNFSGGQKQRLSI 490 (587)
T ss_dssp CHHHHHHHEEEECSSCCCCSEEHHHHHTTTCSSCCHHHHHHHHHHTTCHHHHHTSSSGGGCEECSSSCSSCHHHHHHHHH
T ss_pred CHHHHHhheEEECCCCcCcCccHHHHHhccCCCCCHHHHHHHHHHhCcHHHHHhcccchhhHhcCCCCCcCHHHHHHHHH
Confidence 9999999999999999999999999999874 68899999999999999999998 999999999999999999999999
Q ss_pred HHHHccCCCEEEeecCCCCCCHHHHHHHHHHHHHhcCCcEEEEeccCchhHhhcCEEEEEeCCeEEE--------ecCch
Q psy1502 486 ARAIVRNNVILVLDEATANVDPKTDLLIQRTIRKKFADCTVLTIAHRLHTIMDSDKVLVMDSGVAVV--------SSFGF 557 (597)
Q Consensus 486 ARAll~~p~ILILDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrlsti~~~D~Iivl~~G~Ive--------~~~g~ 557 (597)
||||+++|+|||||||||+||+++|+.|++.|+++.+++|+|+||||+++++.||+|++|++|+|+| ++++.
T Consensus 491 ARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~~d~i~vl~~G~i~~~g~~~el~~~~~~ 570 (587)
T 3qf4_A 491 ARALVKKPKVLILDDCTSSVDPITEKRILDGLKRYTKGCTTFIITQKIPTALLADKILVLHEGKVAGFGTHKELLEHCKP 570 (587)
T ss_dssp HHHHHTCCSEEEEESCCTTSCHHHHHHHHHHHHHHSTTCEEEEEESCHHHHTTSSEEEEEETTEEEEEECHHHHHHHCHH
T ss_pred HHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHhCCCCEEEEEecChHHHHhCCEEEEEECCEEEEECCHHHHHhCCcH
Confidence 9999999999999999999999999999999999989999999999999999999999999999998 45677
Q ss_pred hHhhHhhh
Q psy1502 558 FFSKDLIE 565 (597)
Q Consensus 558 y~~l~~~~ 565 (597)
|++++..+
T Consensus 571 ~~~~~~~~ 578 (587)
T 3qf4_A 571 YREIYESQ 578 (587)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 88887644
No 5
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=100.00 E-value=1.2e-86 Score=745.38 Aligned_cols=531 Identities=20% Similarity=0.249 Sum_probs=429.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcccccccccch----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1502 31 DTAFVEMYGRSTFFKIVNNTINQHHHFHLLST----ESYIGIYFSLIVGLFVAGISRSTAFYSACMRCSKGIHKKMFEAV 106 (597)
Q Consensus 31 ~~a~~~~~~~~~~~~ii~~~~~~~~~~~~~~~----~~~i~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~l 106 (597)
+.+++.+..|.++..+++..+........... ..+...++++.++..++.+++.+...+.+.++..++|.++|+++
T Consensus 25 ~~~~~~~~~p~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~l 104 (578)
T 4a82_A 25 IKFGIPMLIPLLIKYAIDGVINNHALTTDEKVHHLTIAIGIALFIFVIVRPPIEFIRQYLAQWTSNKILYDIRKKLYNHL 104 (578)
T ss_dssp TTTHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33456777888888888876643211000001 11122222333344566777788888899999999999999999
Q ss_pred HcCCchhhcccChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1502 107 VYSPLAFFSTNPSGRILNRFSKDMGAVDEVLPKAMLDAAQGVMQVSGALIVSLSVNPLFSIPVLILLYLFWRLSKAYLRT 186 (597)
Q Consensus 107 l~~~~~~f~~~~sG~l~~rit~D~~~i~~~~~~~~~~~i~~~~~~i~~~i~l~~~~~~l~l~~~~~~~~~~~~~~~~~~~ 186 (597)
+++|++||+++++|++++|+++|++.++.++...+..++.+++.++++++++++++|++++++++++++++++...+.+.
T Consensus 105 l~~~~~~~~~~~~G~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~l~l~~l~~~~l~~~~~~~~~~~ 184 (578)
T 4a82_A 105 QALSARFYANNQVGQVISRVINDVEQTKDFILTGLMNIWLDCITIIIALSIMFFLDVKLTLAALFIFPFYILTVYVFFGR 184 (578)
T ss_dssp HHSCHHHHHTSCHHHHHHHHHHHHHHTHHHHHCCCCCHHHHHHHHHHHHHHHHHHCTTTHHHHTTHHHHHHHHHHHHHHH
T ss_pred HCCCHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999998888888999999999999999999999988877777666666666666
Q ss_pred HHHHHHHHHHhccchHHHHHHHHccHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH
Q psy1502 187 SKSLKYLEGVTRSPVFTHLNACLHGLPTIRAHGAAKILVEEFDYHQDLHSSTWHLFVYTNMGFAYLIDFLCLLYLS-TIL 265 (597)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ika~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 265 (597)
.++..+......+++.+.+.|.++|+++||+||.|+.+.++|++..++..+...+..............+..+... ++.
T Consensus 185 ~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 264 (578)
T 4a82_A 185 LRKLTRERSQALAEVQGFLHERVQGISVVKSFAIEDNEAKNFDKKNTNFLTRALKHTRWNAYSFAAINTVTDIGPIIVIG 264 (578)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666555666677888999999999999999999999999999887765544333322222222222222221111 111
Q ss_pred HHHHHH---HhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCCCCCCCCcccEE
Q psy1502 266 ISFFFF---ADIGGKVGLAVTQTMTLMGVVQWAMRQAAEVENHMISVKRLVEYTKLEPEGNLSPNYEDENEIWPVLGKIE 342 (597)
Q Consensus 266 ~~~~~~---~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~ 342 (597)
++.... .++.|.+.+++.++..+..++..+...+..++.+..+++|+.++++.+++.+.... ..+..+..+.|+
T Consensus 265 ~g~~~v~~g~lt~g~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~~~---~~~~~~~~~~i~ 341 (578)
T 4a82_A 265 VGAYLAISGSITVGTLAAFVGYLELLFGPLRRLVASFTTLTQSFASMDRVFQLIDEDYDIKNGVG---AQPIEIKQGRID 341 (578)
T ss_dssp HHHHHHHHTSCCHHHHHHHHHTHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCSSCCCTT---CCCCCCCSCCEE
T ss_pred HHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccCCCC---ccccCCCCCeEE
Confidence 122111 24566777777777888889999999999999999999999999987654322111 111123457899
Q ss_pred EEeeEEEeCC-CCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhcccc-CCceEEEcceeCCCCChHHHhcCcEEEe
Q psy1502 343 FQNTNVRYLS-GPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAE-VEGVIKIDDIDTEDVPLSKLRSNISIIP 420 (597)
Q Consensus 343 f~nVsf~Y~~-~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~~-~~G~I~idg~di~~~~~~~lr~~I~~V~ 420 (597)
++||+|+|++ ++++|+|+||+|++||++|||||||||||||+++|+|+|+ ++|+|.+||+|+++++.+++|++|||||
T Consensus 342 ~~~v~~~y~~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~~~~~~~~~~r~~i~~v~ 421 (578)
T 4a82_A 342 IDHVSFQYNDNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTGSLRNQIGLVQ 421 (578)
T ss_dssp EEEEEECSCSSSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCCSEEEEEETTEEGGGSCHHHHHHTEEEEC
T ss_pred EEEEEEEcCCCCCcceeeeEEEECCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHhhheEEEe
Confidence 9999999975 4679999999999999999999999999999999999985 6899999999999999999999999999
Q ss_pred CCCCCCCccHHhhcccCC-CCChHHHHHHHHHhcHHHHHHhc-CCCchhhhCCCCCCChhHHHHHHHHHHHccCCCEEEe
Q psy1502 421 QDPVLFSGTLRKNLDPFE-KYPDYVLWTALQEVELKDMIMEG-AGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVL 498 (597)
Q Consensus 421 Q~~~LF~gTI~eNI~~~~-~~~~e~i~~a~~~a~l~~fI~~l-~GldT~vge~G~~LSGGQrQRIaIARAll~~p~ILIL 498 (597)
|+|++|++||+|||.++. +.++++++++++.++++++++.+ +|+||.+||+|.+||||||||++||||++++|+||||
T Consensus 422 Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~g~~t~~~~~g~~LSgGq~Qrv~lAral~~~p~illl 501 (578)
T 4a82_A 422 QDNILFSDTVKENILLGRPTATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLNNPPILIL 501 (578)
T ss_dssp SSCCCCSSBHHHHHGGGCSSCCHHHHHHHHHHTTCHHHHHTSTTGGGCBCCGGGTTSCHHHHHHHHHHHHHHHCCSEEEE
T ss_pred CCCccCcccHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhCcchhhhhhccCCCcCCHHHHHHHHHHHHHHcCCCEEEE
Confidence 999999999999999864 57889999999999999999998 9999999999999999999999999999999999999
Q ss_pred ecCCCCCCHHHHHHHHHHHHHhcCCcEEEEeccCchhHhhcCEEEEEeCCeEEE--------ecCchhHhhHhh
Q psy1502 499 DEATANVDPKTDLLIQRTIRKKFADCTVLTIAHRLHTIMDSDKVLVMDSGVAVV--------SSFGFFFSKDLI 564 (597)
Q Consensus 499 DEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrlsti~~~D~Iivl~~G~Ive--------~~~g~y~~l~~~ 564 (597)
|||||+||+++++.+++.|+++.+++|+|+||||+++++.||+|++|++|+|++ +++|.|+++|..
T Consensus 502 DEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~~d~i~~l~~G~i~~~g~~~el~~~~~~~~~~~~~ 575 (578)
T 4a82_A 502 DEATSALDLESESIIQEALDVLSKDRTTLIVAHRLSTITHADKIVVIENGHIVETGTHRELIAKQGAYEHLYSI 575 (578)
T ss_dssp ESTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSSGGGTTTCSEEEEEETTEEEEEECHHHHHHTTSHHHHHHTT
T ss_pred ECccccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHcCCEEEEEECCEEEEECCHHHHHhCCcHHHHHHHh
Confidence 999999999999999999999988999999999999999999999999999998 456777777754
No 6
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=100.00 E-value=5.9e-85 Score=732.72 Aligned_cols=527 Identities=20% Similarity=0.281 Sum_probs=434.2
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhcccccccccchhHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Q psy1502 30 NDTAFVEMYGRSTFFKIVNNTINQHHHFHLLSTESY-IGIYFSLIVGLFVAGISRSTAFYSACMRCSKGIHKKMFEAVVY 108 (597)
Q Consensus 30 ~~~a~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~-i~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~ 108 (597)
.+.+++.+..|.++..+++....... . ....+ ...++++.++..++.+++.++....+.++..++|.++|+++++
T Consensus 35 ~~~~~~~~~~~~~~~~~id~~~~~~~-~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~ 110 (582)
T 3b5x_A 35 VINAAADTYMISLLKPLLDEGFGNAE-S---NFLRILPFMILGLMFVRGLSGFASSYCLSWVSGNVVMQMRRRLFNHFMH 110 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCc-h---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 34456667777777777776553211 0 11111 1223344455567777788888889999999999999999999
Q ss_pred CCchhhcccChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1502 109 SPLAFFSTNPSGRILNRFSKDMGAVDEVLPKAMLDAAQGVMQVSGALIVSLSVNPLFSIPVLILLYLFWRLSKAYLRTSK 188 (597)
Q Consensus 109 ~~~~~f~~~~sG~l~~rit~D~~~i~~~~~~~~~~~i~~~~~~i~~~i~l~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~ 188 (597)
+|++||+++++|++++|+++|++.++.++...+..++.+++.++++++++++++|++++++++++++.+++...+.+..+
T Consensus 111 ~~~~~~~~~~~g~l~~rl~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~l~li~l~~~~l~~~~~~~~~~~~~ 190 (582)
T 3b5x_A 111 MPVRFFDQESTGGLLSRITYDSEQVAGATSRALVSIVREGASIIGLLTLMFWNSWQLSLVLIVVAPVVAFAISFVSKRFR 190 (582)
T ss_pred CCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999998887777766666666666656
Q ss_pred HHHHHHHHhccchHHHHHHHHccHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HH
Q psy1502 189 SLKYLEGVTRSPVFTHLNACLHGLPTIRAHGAAKILVEEFDYHQDLHSSTWHLFVYTNMGFAYLIDFLCLLYLSTIL-IS 267 (597)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~e~l~gi~~Ika~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 267 (597)
+..+......+++.+.+.|.++|+++||+||.|+++.++|++..++..+...+......+......++..+...+++ ++
T Consensus 191 ~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g 270 (582)
T 3b5x_A 191 KISRNMQTAMGHVTSSAEQMLKGHKVVLSYGGQEVERKRFDKVSNSMRQQTMKLVSAQSIADPVIQMIASLALFAVLFLA 270 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56555566677888999999999999999999999999999888776655444443334333344433322222211 12
Q ss_pred HHHH---HhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCCCCCCCCcccEEEE
Q psy1502 268 FFFF---ADIGGKVGLAVTQTMTLMGVVQWAMRQAAEVENHMISVKRLVEYTKLEPEGNLSPNYEDENEIWPVLGKIEFQ 344 (597)
Q Consensus 268 ~~~~---~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~f~ 344 (597)
.+.. .++.|.+.+++.++..+..++..+...+..++.+..+++|+.++++.+++.+. .. .+.++..+.|+++
T Consensus 271 ~~~v~~g~lt~g~l~~~~~~~~~~~~pl~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~~~-~~----~~~~~~~~~i~~~ 345 (582)
T 3b5x_A 271 SVDSIRAELTPGTFTVVFSAMFGLMRPLKALTSVTSEFQRGMAACQTLFGLMDLETERDN-GK----YEAERVNGEVDVK 345 (582)
T ss_pred HHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCC-CC----CCCCCCCCeEEEE
Confidence 2221 34567777888888888999999999999999999999999999986654321 10 1111234679999
Q ss_pred eeEEEeCCC-CccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhcccc-CCceEEEcceeCCCCChHHHhcCcEEEeCC
Q psy1502 345 NTNVRYLSG-PRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAE-VEGVIKIDDIDTEDVPLSKLRSNISIIPQD 422 (597)
Q Consensus 345 nVsf~Y~~~-~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~~-~~G~I~idg~di~~~~~~~lr~~I~~V~Q~ 422 (597)
||+|+|+++ +++|+|+||+|++||++|||||||||||||+++|+|+|+ ++|+|.+||+|+++++.+++|++|+||||+
T Consensus 346 ~v~~~y~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~ 425 (582)
T 3b5x_A 346 DVTFTYQGKEKPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVDSGSICLDGHDVRDYKLTNLRRHFALVSQN 425 (582)
T ss_pred EEEEEcCCCCccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEEhhhCCHHHHhcCeEEEcCC
Confidence 999999753 679999999999999999999999999999999999985 789999999999999999999999999999
Q ss_pred CCCCCccHHhhcccCC--CCChHHHHHHHHHhcHHHHHHhc-CCCchhhhCCCCCCChhHHHHHHHHHHHccCCCEEEee
Q psy1502 423 PVLFSGTLRKNLDPFE--KYPDYVLWTALQEVELKDMIMEG-AGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLD 499 (597)
Q Consensus 423 ~~LF~gTI~eNI~~~~--~~~~e~i~~a~~~a~l~~fI~~l-~GldT~vge~G~~LSGGQrQRIaIARAll~~p~ILILD 499 (597)
|.+|++|++|||.++. +.++++++++++.++++++++.+ +||||.+||+|.+||||||||++|||||+++|+|||||
T Consensus 426 ~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~~~~p~g~~t~~~~~~~~LSgGq~qr~~iAral~~~p~illlD 505 (582)
T 3b5x_A 426 VHLFNDTIANNIAYAAEGEYTREQIEQAARQAHAMEFIENMPQGLDTVIGENGTSLSGGQRQRVAIARALLRDAPVLILD 505 (582)
T ss_pred CccccccHHHHHhccCCCCCCHHHHHHHHHHCCCHHHHHhCcccccchhcCCCCcCCHHHHHHHHHHHHHHcCCCEEEEE
Confidence 9999999999999864 57889999999999999999998 99999999999999999999999999999999999999
Q ss_pred cCCCCCCHHHHHHHHHHHHHhcCCcEEEEeccCchhHhhcCEEEEEeCCeEEE--------ecCchhHhhHhhh
Q psy1502 500 EATANVDPKTDLLIQRTIRKKFADCTVLTIAHRLHTIMDSDKVLVMDSGVAVV--------SSFGFFFSKDLIE 565 (597)
Q Consensus 500 EaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrlsti~~~D~Iivl~~G~Ive--------~~~g~y~~l~~~~ 565 (597)
||||+||+++++.+++.|+++.+++|+|+||||+++++.||+|++|++|+|++ +.++.|++++..+
T Consensus 506 Epts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~q 579 (582)
T 3b5x_A 506 EATSALDTESERAIQAALDELQKNKTVLVIAHRLSTIEQADEILVVDEGEIIERGRHADLLAQDGAYAQLHRIQ 579 (582)
T ss_pred CccccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHhCCEEEEEECCEEEEECCHHHHHhCCcHHHHHHHHh
Confidence 99999999999999999999888999999999999999999999999999998 4466777777643
No 7
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=100.00 E-value=5.8e-85 Score=732.81 Aligned_cols=527 Identities=22% Similarity=0.303 Sum_probs=432.2
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhcccccccccchhHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Q psy1502 30 NDTAFVEMYGRSTFFKIVNNTINQHHHFHLLSTESY-IGIYFSLIVGLFVAGISRSTAFYSACMRCSKGIHKKMFEAVVY 108 (597)
Q Consensus 30 ~~~a~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~-i~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~ 108 (597)
.+.+++.+..|.++..+++....... . ....+ ...++++.++..++.+++.+.....+.++..++|.++|+++++
T Consensus 35 ~~~~~~~~~~~~~~~~~id~~~~~~~---~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~l~~ 110 (582)
T 3b60_A 35 ILNAASDTFMLSLLKPLLDDGFGKTD---R-SVLLWMPLVVIGLMILRGITSYISSYCISWVSGKVVMTMRRRLFGHMMG 110 (582)
T ss_dssp HHHHHHHHHHHHHHTHHHHSSTTSTT---H-HHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCc---h-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 33445666666666677765543211 0 01111 1223344455566777788888889999999999999999999
Q ss_pred CCchhhcccChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1502 109 SPLAFFSTNPSGRILNRFSKDMGAVDEVLPKAMLDAAQGVMQVSGALIVSLSVNPLFSIPVLILLYLFWRLSKAYLRTSK 188 (597)
Q Consensus 109 ~~~~~f~~~~sG~l~~rit~D~~~i~~~~~~~~~~~i~~~~~~i~~~i~l~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~ 188 (597)
+|++||+++++|++++|+++|++.++.++...+..++..++.++++++++++++|++++++++++++.+++...+.+..+
T Consensus 111 ~~~~~~~~~~~g~l~~r~~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~l~li~l~~~~l~~~~~~~~~~~~~ 190 (582)
T 3b60_A 111 MPVAFFDKQSTGTLLSRITYDSEQVASSSSGALITVVREGASIIGLFIMMFYYSWQLSIILVVLAPIVSIAIRVVSKRFR 190 (582)
T ss_dssp CCSTHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999988887777766666666666666
Q ss_pred HHHHHHHHhccchHHHHHHHHccHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H
Q psy1502 189 SLKYLEGVTRSPVFTHLNACLHGLPTIRAHGAAKILVEEFDYHQDLHSSTWHLFVYTNMGFAYLIDFLCLLYLSTILI-S 267 (597)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~e~l~gi~~Ika~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 267 (597)
+..+......+++.+.+.|.++|+++||+||.|+++.++|.+..++..+...+......+......++..+...+++. +
T Consensus 191 ~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 270 (582)
T 3b60_A 191 SISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNKMRLQGMKMVSASSISDPIIQLIASLALAFVLYAA 270 (582)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 665555666778889999999999999999999999999999887766655444444444444444333222222111 1
Q ss_pred HHHH---HhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCCCCCCCCcccEEEE
Q psy1502 268 FFFF---ADIGGKVGLAVTQTMTLMGVVQWAMRQAAEVENHMISVKRLVEYTKLEPEGNLSPNYEDENEIWPVLGKIEFQ 344 (597)
Q Consensus 268 ~~~~---~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~f~ 344 (597)
.+.. .++.|.+.+++.++..+..++..+...+..++.+..+++|+.++++.+++.+. .. .+.++..+.|+++
T Consensus 271 ~~~v~~g~lt~g~l~~~~~~~~~~~~pl~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~~~-~~----~~~~~~~~~i~~~ 345 (582)
T 3b60_A 271 SFPSVMDSLTAGTITVVFSSMIALMRPLKSLTNVNAQFQRGMAACQTLFAILDSEQEKDE-GK----RVIDRATGDLEFR 345 (582)
T ss_dssp HSSSTTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCSCCC-CC----BCCSCCCCCEEEE
T ss_pred HHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCccC-CC----CCCCCCCCcEEEE
Confidence 1111 24567777778888888999999999999999999999999999987654321 11 1111234679999
Q ss_pred eeEEEeCCC-CccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhcccc-CCceEEEcceeCCCCChHHHhcCcEEEeCC
Q psy1502 345 NTNVRYLSG-PRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAE-VEGVIKIDDIDTEDVPLSKLRSNISIIPQD 422 (597)
Q Consensus 345 nVsf~Y~~~-~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~~-~~G~I~idg~di~~~~~~~lr~~I~~V~Q~ 422 (597)
||+|+|+++ +++|+|+||+|++||++|||||||||||||+++|+|+++ ++|+|.+||+|+++++.+++|++|+||||+
T Consensus 346 ~v~~~y~~~~~~~l~~v~~~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~ 425 (582)
T 3b60_A 346 NVTFTYPGREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYTLASLRNQVALVSQN 425 (582)
T ss_dssp EEEECSSSSSCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCCSEEEEEETTEETTTBCHHHHHHTEEEECSS
T ss_pred EEEEEcCCCCCccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhhccCCCCCeEEECCEEccccCHHHHHhhCeEEccC
Confidence 999999743 679999999999999999999999999999999999985 689999999999999999999999999999
Q ss_pred CCCCCccHHhhcccCC--CCChHHHHHHHHHhcHHHHHHhc-CCCchhhhCCCCCCChhHHHHHHHHHHHccCCCEEEee
Q psy1502 423 PVLFSGTLRKNLDPFE--KYPDYVLWTALQEVELKDMIMEG-AGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLD 499 (597)
Q Consensus 423 ~~LF~gTI~eNI~~~~--~~~~e~i~~a~~~a~l~~fI~~l-~GldT~vge~G~~LSGGQrQRIaIARAll~~p~ILILD 499 (597)
|.+|++|++|||.++. +.++++++++++.++++++++.+ +||||.+||+|.+||||||||++|||||+++|+|||||
T Consensus 426 ~~l~~~tv~eni~~~~~~~~~~~~~~~~l~~~~l~~~~~~~p~g~~~~~~~~~~~LSgGq~qrl~iAral~~~p~illlD 505 (582)
T 3b60_A 426 VHLFNDTVANNIAYARTEEYSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARALLRDSPILILD 505 (582)
T ss_dssp CCCCSSBHHHHHHTTTTSCCCHHHHHHHHHTTTCHHHHHHSTTGGGSBCCTTSCSSCHHHHHHHHHHHHHHHCCSEEEEE
T ss_pred CcCCCCCHHHHHhccCCCCCCHHHHHHHHHHcCCHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHHhCCCEEEEE
Confidence 9999999999999864 57889999999999999999998 99999999999999999999999999999999999999
Q ss_pred cCCCCCCHHHHHHHHHHHHHhcCCcEEEEeccCchhHhhcCEEEEEeCCeEEE--------ecCchhHhhHhhh
Q psy1502 500 EATANVDPKTDLLIQRTIRKKFADCTVLTIAHRLHTIMDSDKVLVMDSGVAVV--------SSFGFFFSKDLIE 565 (597)
Q Consensus 500 EaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrlsti~~~D~Iivl~~G~Ive--------~~~g~y~~l~~~~ 565 (597)
||||+||+++++.+++.|+++.+++|+|+||||+++++.||+|++|++|+|++ +.++.|++++..+
T Consensus 506 Epts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~q 579 (582)
T 3b60_A 506 EATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIEQADEIVVVEDGIIVERGTHSELLAQHGVYAQLHKMQ 579 (582)
T ss_dssp TTTSSCCHHHHHHHHHHHHHHHTTSEEEEECSCGGGTTTCSEEEEEETTEEEEEECHHHHHHHTSSHHHHHHHT
T ss_pred CccccCCHHHHHHHHHHHHHHhCCCEEEEEeccHHHHHhCCEEEEEECCEEEEecCHHHHHHcCCHHHHHHHHh
Confidence 99999999999999999999888999999999999999999999999999998 3456677776543
No 8
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=100.00 E-value=1.8e-84 Score=730.60 Aligned_cols=533 Identities=20% Similarity=0.238 Sum_probs=421.7
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Q psy1502 30 NDTAFVEMYGRSTFFKIVNNTINQHHHFHLLSTESYIGIYFSLIVGLFVAGISRSTAFYSACMRCSKGIHKKMFEAVVYS 109 (597)
Q Consensus 30 ~~~a~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~i~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~ 109 (597)
.+.+++.+..|.++..+++................++..++++.++..++.+++.++....+.++..++|.++|++++++
T Consensus 29 ~~~~~~~~~~p~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~l~~~ 108 (595)
T 2yl4_A 29 TMSSVISMSAPFFLGKIIDVIYTNPTVDYSDNLTRLCLGLSAVFLCGAAANAIRVYLMQTSGQRIVNRLRTSLFSSILRQ 108 (595)
T ss_dssp HHHHHHHTTHHHHHHHHHHHHHHCTTSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 34445566667777777776553211000001112223334444455566777788888899999999999999999999
Q ss_pred CchhhcccChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1502 110 PLAFFSTNPSGRILNRFSKDMGAVDEVLPKAMLDAAQGVMQVSGALIVSLSVNPLFSIPVLILLYLFWRLSKAYLRTSKS 189 (597)
Q Consensus 110 ~~~~f~~~~sG~l~~rit~D~~~i~~~~~~~~~~~i~~~~~~i~~~i~l~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~ 189 (597)
|++||+++++|++++|+++|++.++..+...+..++..++.++++++++++++|++++++++.+++.+++...+.+..++
T Consensus 109 ~~~~~~~~~~g~l~~r~~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~l~li~l~~~~l~~~~~~~~~~~~~~ 188 (595)
T 2yl4_A 109 EVAFFDKTRTGELINRLSSDTALLGRSVTENLSDGLRAGAQASVGISMMFFVSPNLATFVLSVVPPVSIIAVIYGRYLRK 188 (595)
T ss_dssp CHHHHHHSCHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999988777777666665566665555
Q ss_pred HHHHHHHhccchHHHHHHHHccHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHH
Q psy1502 190 LKYLEGVTRSPVFTHLNACLHGLPTIRAHGAAKILVEEFDYHQDLHSSTWHLFVYTNMGFAYLIDFLCLLYLST-ILISF 268 (597)
Q Consensus 190 ~~~~~~~~~~~~~~~~~e~l~gi~~Ika~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 268 (597)
..+......+++.+.+.|.++|+++||+||.|+++.++|.+..+...+...+......+......++..+...+ +.++.
T Consensus 189 ~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 268 (595)
T 2yl4_A 189 LTKVTQDSLAQATQLAEERIGNVRTVRAFGKEMTEIEKYASKVDHVMQLARKEAFARAGFFGATGLSGNLIVLSVLYKGG 268 (595)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555556667889999999999999999999999999998887765554433333333333333332222111 11222
Q ss_pred HHH---HhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCCCCCCCCccc-EEEE
Q psy1502 269 FFF---ADIGGKVGLAVTQTMTLMGVVQWAMRQAAEVENHMISVKRLVEYTKLEPEGNLSPNYEDENEIWPVLGK-IEFQ 344 (597)
Q Consensus 269 ~~~---~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~-I~f~ 344 (597)
... .++.|.+.+++.++..+..++..+...+..++.+..+++|+.++++.+++.+.... .....+..++ |+++
T Consensus 269 ~~v~~g~lt~g~l~~~~~~~~~~~~pl~~l~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~~~---~~~~~~~~~~~i~~~ 345 (595)
T 2yl4_A 269 LLMGSAHMTVGELSSFLMYAFWVGISIGGLSSFYSELMKGLGAGGRLWELLEREPKLPFNEG---VILNEKSFQGALEFK 345 (595)
T ss_dssp HHHHTTSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCSSCSSCS---BCCCTTTCCCCEEEE
T ss_pred HHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCCCCC---CCCCcCCCCCeEEEE
Confidence 211 23557777777888888899999999999999999999999999987654321111 1111123467 9999
Q ss_pred eeEEEeCCC--CccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhcccc-CCceEEEcceeCCCCChHHHhcCcEEEeC
Q psy1502 345 NTNVRYLSG--PRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAE-VEGVIKIDDIDTEDVPLSKLRSNISIIPQ 421 (597)
Q Consensus 345 nVsf~Y~~~--~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~~-~~G~I~idg~di~~~~~~~lr~~I~~V~Q 421 (597)
||+|+|+++ +++|+|+||+|++||++|||||||||||||+++|+|+++ ++|+|.+||+|+++++.+++|++|+||||
T Consensus 346 ~v~~~y~~~~~~~vl~~isl~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i~~~g~~i~~~~~~~~~~~i~~v~Q 425 (595)
T 2yl4_A 346 NVHFAYPARPEVPIFQDFSLSIPSGSVTALVGPSGSGKSTVLSLLLRLYDPASGTISLDGHDIRQLNPVWLRSKIGTVSQ 425 (595)
T ss_dssp EEEEECSSCTTSEEEEEEEEEECTTCEEEEECCTTSSSTHHHHHHTTSSCCSEEEEEETTEETTTBCHHHHHHSEEEECS
T ss_pred EEEEEeCCCCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECCEEhhhCCHHHHHhceEEEcc
Confidence 999999753 479999999999999999999999999999999999985 68999999999999999999999999999
Q ss_pred CCCCCCccHHhhcccCC-C---CChHHHHHHHHHhcHHHHHHhc-CCCchhhhCCCCCCChhHHHHHHHHHHHccCCCEE
Q psy1502 422 DPVLFSGTLRKNLDPFE-K---YPDYVLWTALQEVELKDMIMEG-AGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVIL 496 (597)
Q Consensus 422 ~~~LF~gTI~eNI~~~~-~---~~~e~i~~a~~~a~l~~fI~~l-~GldT~vge~G~~LSGGQrQRIaIARAll~~p~IL 496 (597)
+|.+|++|++|||.++. . .++++++++++.++++++++.+ +|+||.+||+|.+||||||||++|||||+++|+||
T Consensus 426 ~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~g~~~~~~~~~~~LSgGq~qrv~iAral~~~p~il 505 (595)
T 2yl4_A 426 EPILFSCSIAENIAYGADDPSSVTAEEIQRVAEVANAVAFIRNFPQGFNTVVGEKGVLLSGGQKQRIAIARALLKNPKIL 505 (595)
T ss_dssp SCCCCSSBHHHHHHTTSSSTTTSCHHHHHHHHHHTTCHHHHHTSSSGGGCBCSSSSCCCCHHHHHHHHHHHHHHHCCSEE
T ss_pred CCcccCCCHHHHHhhcCCCccccCHHHHHHHHHHcCCHHHHHhCcccccccccCCCCcCCHHHHHHHHHHHHHHcCCCEE
Confidence 99999999999998864 2 6889999999999999999998 99999999999999999999999999999999999
Q ss_pred EeecCCCCCCHHHHHHHHHHHHHhcCCcEEEEeccCchhHhhcCEEEEEeCCeEEE--------e-cCchhHhhHhhh
Q psy1502 497 VLDEATANVDPKTDLLIQRTIRKKFADCTVLTIAHRLHTIMDSDKVLVMDSGVAVV--------S-SFGFFFSKDLIE 565 (597)
Q Consensus 497 ILDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrlsti~~~D~Iivl~~G~Ive--------~-~~g~y~~l~~~~ 565 (597)
|||||||+||+++++.+++.|+++.+++|+|+||||+++++.||+|++|++|+|++ + .++.|++++..+
T Consensus 506 llDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~q 583 (595)
T 2yl4_A 506 LLDEATSALDAENEYLVQEALDRLMDGRTVLVIAHRLSTIKNANMVAVLDQGKITEYGKHEELLSKPNGIYRKLMNKQ 583 (595)
T ss_dssp EEECCCSSCCHHHHHHHHHHHHHHHTTSEEEEECCCHHHHHHSSEEEEEETTEEEEEECSCC------C---------
T ss_pred EEECcccCCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHcCCEEEEEECCEEEEECCHHHHHhCCChHHHHHHHHh
Confidence 99999999999999999999999888999999999999999999999999999998 2 467788887644
No 9
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=100.00 E-value=1.3e-84 Score=784.78 Aligned_cols=499 Identities=22% Similarity=0.281 Sum_probs=416.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhhcccChhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1502 65 YIGIYFSLIVGLFVAGISRSTAFYSACMRCSKGIHKKMFEAVVYSPLAFFSTNPSGRILNRFSKDMGAVDEVLPKAMLDA 144 (597)
Q Consensus 65 ~i~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~~f~~~~sG~l~~rit~D~~~i~~~~~~~~~~~ 144 (597)
+.+.|+++.++..++.+++.++..+++.++..++|.++|++++++|++||+++++|++++|+++|++.+++.+...+..+
T Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~l~~~~~~~f~~~~~G~l~sr~~~D~~~i~~~~~~~~~~~ 189 (1284)
T 3g5u_A 110 YAYYYTGIGAGVLIVAYIQVSFWCLAAGRQIHKIRQKFFHAIMNQEIGWFDVHDVGELNTRLTDDVSKINEGIGDKIGMF 189 (1284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSTTHHHHSCCSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666777778888889999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHccHHHHHHhchHHHH
Q psy1502 145 AQGVMQVSGALIVSLSVNPLFSIPVLILLYLFWRLSKAYLRTSKSLKYLEGVTRSPVFTHLNACLHGLPTIRAHGAAKIL 224 (597)
Q Consensus 145 i~~~~~~i~~~i~l~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ika~~~e~~~ 224 (597)
+..+++++++++++++++|++++++++++++++++..++.+..++..+......+++.+.+.|+++|+++||+||.|+++
T Consensus 190 ~~~~~~~i~~~~~~~~~~~~l~l~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~~ikaf~~e~~~ 269 (1284)
T 3g5u_A 190 FQAMATFFGGFIIGFTRGWKLTLVILAISPVLGLSAGIWAKILSSFTDKELHAYAKAGAVAEEVLAAIRTVIAFGGQKKE 269 (1284)
T ss_dssp HHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCHHHHHTTCCCCSH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHhcchHHH
Confidence 99999999999999999999998888888877777777776666666566666777889999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH---HhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1502 225 VEEFDYHQDLHSSTWHLFVYTNMGFAYLIDFLCLLYLS-TILISFFFF---ADIGGKVGLAVTQTMTLMGVVQWAMRQAA 300 (597)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~---~~~~g~i~~~~~~~~~~~~~~~~~~~~~~ 300 (597)
.++|++..+...+...+.............++.....+ ++.++.... .++.|.+.+++.++.....++..+...+.
T Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 349 (1284)
T 3g5u_A 270 LERYNNNLEEAKRLGIKKAITANISMGAAFLLIYASYALAFWYGTSLVISKEYSIGQVLTVFFSVLIGAFSVGQASPNIE 349 (1284)
T ss_dssp HHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCSSCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999887776554332222112112222222211111 111111111 22345454444455555667777888888
Q ss_pred HHHHHHHHHHHHHHhhccCCCCCCCCCCCCCCCCCCCcccEEEEeeEEEeCCC--CccceeeeEEEcCCcEEEEEcCCCC
Q psy1502 301 EVENHMISVKRLVEYTKLEPEGNLSPNYEDENEIWPVLGKIEFQNTNVRYLSG--PRVIKNLNITIHPKEKIGIVGRTGA 378 (597)
Q Consensus 301 ~~~~~~~s~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~f~nVsf~Y~~~--~~vL~~isl~I~~G~~vaIVG~SGs 378 (597)
.++.+.++++|++++++.+++.+.... ......+..|.|+|+||+|+|+++ +++|+|+||+|++||++||||||||
T Consensus 350 ~~~~~~~a~~ri~~~l~~~~~~~~~~~--~~~~~~~~~g~i~~~~v~~~y~~~~~~~vL~~isl~i~~G~~~~ivG~sGs 427 (1284)
T 3g5u_A 350 AFANARGAAYEVFKIIDNKPSIDSFSK--SGHKPDNIQGNLEFKNIHFSYPSRKEVQILKGLNLKVKSGQTVALVGNSGC 427 (1284)
T ss_dssp HHHHHHHHHHHHHHTTSCCCCCSSCCS--SCCCCTTCCCCEEEEEEEECCSSTTSCCSEEEEEEEECTTCEEEEECCSSS
T ss_pred HHHHHHHHHHHHHHHHcCCCcCCcccc--cCCCCCCCCCeEEEEEEEEEcCCCCCCcceecceEEEcCCCEEEEECCCCC
Confidence 999999999999999987654322111 111112346789999999999753 4799999999999999999999999
Q ss_pred CHHHHHHHHhcccc-CCceEEEcceeCCCCChHHHhcCcEEEeCCCCCCCccHHhhcccCC-CCChHHHHHHHHHhcHHH
Q psy1502 379 GKSSLIAAIFRLAE-VEGVIKIDDIDTEDVPLSKLRSNISIIPQDPVLFSGTLRKNLDPFE-KYPDYVLWTALQEVELKD 456 (597)
Q Consensus 379 GKSTL~~LL~~l~~-~~G~I~idg~di~~~~~~~lr~~I~~V~Q~~~LF~gTI~eNI~~~~-~~~~e~i~~a~~~a~l~~ 456 (597)
|||||+++|+|+|+ ++|+|.+||+|+++++++++|++||||||+|+||++||+|||.++. +.+++++++|++.+++++
T Consensus 428 GKSTl~~ll~g~~~~~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~ti~eNi~~g~~~~~~~~~~~~~~~~~~~~ 507 (1284)
T 3g5u_A 428 GKSTTVQLMQRLYDPLDGMVSIDGQDIRTINVRYLREIIGVVSQEPVLFATTIAENIRYGREDVTMDEIEKAVKEANAYD 507 (1284)
T ss_dssp SHHHHHHHTTTSSCCSEEEEEETTEEGGGSCHHHHHHHEEEECSSCCCCSSCHHHHHHHHCSSCCHHHHHHHHHHTTCHH
T ss_pred CHHHHHHHHhCCCCCCCeEEEECCEEHHhCCHHHHHhheEEEcCCCccCCccHHHHHhcCCCCCCHHHHHHHHHHhCcHH
Confidence 99999999999995 6899999999999999999999999999999999999999999864 689999999999999999
Q ss_pred HHHhc-CCCchhhhCCCCCCChhHHHHHHHHHHHccCCCEEEeecCCCCCCHHHHHHHHHHHHHhcCCcEEEEeccCchh
Q psy1502 457 MIMEG-AGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATANVDPKTDLLIQRTIRKKFADCTVLTIAHRLHT 535 (597)
Q Consensus 457 fI~~l-~GldT~vge~G~~LSGGQrQRIaIARAll~~p~ILILDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrlst 535 (597)
+++.+ +||||.+||+|.+|||||||||||||||+++|+|||||||||+||+++|+.|++.+++..+++|+|+||||+++
T Consensus 508 ~i~~l~~g~~t~~~~~g~~LSgGq~QriaiARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~ 587 (1284)
T 3g5u_A 508 FIMKLPHQFDTLVGERGAQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQAALDKAREGRTTIVIAHRLST 587 (1284)
T ss_dssp HHHHSTTGGGCCCSSSSCSSCHHHHHHHHHHHHHHHCCSEEEEESTTCSSCHHHHHHHHHHHHHHHTTSEEEEECSCHHH
T ss_pred HHHhccccccccccCCCCccCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHcCCCEEEEEecCHHH
Confidence 99998 99999999999999999999999999999999999999999999999999999999998899999999999999
Q ss_pred HhhcCEEEEEeCCeEEE--------ecCchhHhhHhhh
Q psy1502 536 IMDSDKVLVMDSGVAVV--------SSFGFFFSKDLIE 565 (597)
Q Consensus 536 i~~~D~Iivl~~G~Ive--------~~~g~y~~l~~~~ 565 (597)
+++||+|+||++|+|+| +.+|.|++++..+
T Consensus 588 i~~~d~i~vl~~G~i~~~g~~~~l~~~~~~~~~~~~~~ 625 (1284)
T 3g5u_A 588 VRNADVIAGFDGGVIVEQGNHDELMREKGIYFKLVMTQ 625 (1284)
T ss_dssp HTTCSEEEECSSSCCCCEECHHHHHHTTSHHHHHHHHT
T ss_pred HHcCCEEEEEECCEEEEECCHHHHHhCCCHHHHHHHHh
Confidence 99999999999999998 5678899888644
No 10
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=100.00 E-value=8.4e-79 Score=734.21 Aligned_cols=497 Identities=18% Similarity=0.247 Sum_probs=396.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhhc--ccChhHHHHHHHHHHHHHHHHHHHHHH
Q psy1502 65 YIGIYFSLIVGLFVAGISRSTAFYSACMRCSKGIHKKMFEAVVYSPLAFFS--TNPSGRILNRFSKDMGAVDEVLPKAML 142 (597)
Q Consensus 65 ~i~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~~f~--~~~sG~l~~rit~D~~~i~~~~~~~~~ 142 (597)
+...++++.++..++.+++.++..+.+.++..++|.++|++++++|++||+ ++++|++++|+++|++.++..+...+.
T Consensus 751 ~~~~~~~l~i~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~ff~~~~~~~G~l~~rl~~D~~~i~~~~~~~l~ 830 (1284)
T 3g5u_A 751 FSLLFLILGIISFITFFLQGFTFGKAGEILTKRLRYMVFKSMLRQDVSWFDDPKNTTGALTTRLANDAAQVKGATGSRLA 830 (1284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCSHHHHSCSCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555666666777788888889999999999999999999999999999 589999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHccHHHHHHhchHH
Q psy1502 143 DAAQGVMQVSGALIVSLSVNPLFSIPVLILLYLFWRLSKAYLRTSKSLKYLEGVTRSPVFTHLNACLHGLPTIRAHGAAK 222 (597)
Q Consensus 143 ~~i~~~~~~i~~~i~l~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ika~~~e~ 222 (597)
.++..++.+++.++++++++|.+++++++++++++++.....+..+..........+.....+.|+++|+++||+|+.++
T Consensus 831 ~~~~~~~~~~~~~i~~~~~~~~l~lv~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~ti~a~~~e~ 910 (1284)
T 3g5u_A 831 VIFQNIANLGTGIIISLIYGWQLTLLLLAIVPIIAIAGVVEMKMLSGQALKDKKELEGSGKIATEAIENFRTVVSLTREQ 910 (1284)
T ss_dssp HHHHHHHHHHHHHHHHHSSCSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTTTTCSSHH
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHH
Confidence 99999999999999999999998877776666555444444333333322333334455678999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH------HhhhhHHHHHHHHHHHHHHHHHHH
Q psy1502 223 ILVEEFDYHQDLHSSTWHLFVYTNMGFAYLIDFLCLLYLSTIL-ISFFFF------ADIGGKVGLAVTQTMTLMGVVQWA 295 (597)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~------~~~~g~i~~~~~~~~~~~~~~~~~ 295 (597)
++.++|.+..+...+...... .+......+.........+ ..++.. ....+.+..++.+......++..+
T Consensus 911 ~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~ 987 (1284)
T 3g5u_A 911 KFETMYAQSLQIPYRNAMKKA---HVFGITFSFTQAMMYFSYAAAFRFGAYLVTQQLMTFENVLLVFSAIVFGAMAVGQV 987 (1284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHCCCSSSCSCSTTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHHHHHHHH
Confidence 999999887765443322211 1111111111111111111 111111 112333444444444444455555
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCCCCCCCCcccEEEEeeEEEeCCC--CccceeeeEEEcCCcEEEEE
Q psy1502 296 MRQAAEVENHMISVKRLVEYTKLEPEGNLSPNYEDENEIWPVLGKIEFQNTNVRYLSG--PRVIKNLNITIHPKEKIGIV 373 (597)
Q Consensus 296 ~~~~~~~~~~~~s~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~f~nVsf~Y~~~--~~vL~~isl~I~~G~~vaIV 373 (597)
...+..+..+..+++|+.++++.+++...... .....++..|.|+|+||+|+|++. .++|+|+||+|++||++|||
T Consensus 988 ~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~--~~~~~~~~~g~i~~~~v~~~y~~~~~~~~l~~vsl~i~~Ge~v~iv 1065 (1284)
T 3g5u_A 988 SSFAPDYAKATVSASHIIRIIEKTPEIDSYST--QGLKPNMLEGNVQFSGVVFNYPTRPSIPVLQGLSLEVKKGQTLALV 1065 (1284)
T ss_dssp TSSSCCSTHHHHHHHHHHHHHHSCCSSSSCCS--SCCCTTTTSCCEEEEEEEBCCSCGGGCCSBSSCCEEECSSSEEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCccccccc--ccccccCCCCcEEEEEEEEECCCCCCCeeecceeEEEcCCCEEEEE
Confidence 55555677889999999999887654322111 111122346789999999999753 47999999999999999999
Q ss_pred cCCCCCHHHHHHHHhcccc-CCceEEEcceeCCCCChHHHhcCcEEEeCCCCCCCccHHhhcccCC---CCChHHHHHHH
Q psy1502 374 GRTGAGKSSLIAAIFRLAE-VEGVIKIDDIDTEDVPLSKLRSNISIIPQDPVLFSGTLRKNLDPFE---KYPDYVLWTAL 449 (597)
Q Consensus 374 G~SGsGKSTL~~LL~~l~~-~~G~I~idg~di~~~~~~~lr~~I~~V~Q~~~LF~gTI~eNI~~~~---~~~~e~i~~a~ 449 (597)
||||||||||+++|+|+|+ ++|+|.+||+|+++++.+++|++|+||||||.+|++||+|||.++. ..+++++++++
T Consensus 1066 G~sGsGKSTl~~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~ti~eNi~~~~~~~~~~~~~i~~~~ 1145 (1284)
T 3g5u_A 1066 GSSGCGKSTVVQLLERFYDPMAGSVFLDGKEIKQLNVQWLRAQLGIVSQEPILFDCSIAENIAYGDNSRVVSYEEIVRAA 1145 (1284)
T ss_dssp CSSSTTHHHHHHHHTTSSCCSEEEEESSSSCTTSSCHHHHTTSCEEEESSCCCCSSBHHHHHTCCCSSCCCCHHHHHHHH
T ss_pred CCCCCCHHHHHHHHhcCcCCCCCEEEECCEEcccCCHHHHHhceEEECCCCccccccHHHHHhccCCCCCCCHHHHHHHH
Confidence 9999999999999999995 6899999999999999999999999999999999999999998863 47899999999
Q ss_pred HHhcHHHHHHhc-CCCchhhhCCCCCCChhHHHHHHHHHHHccCCCEEEeecCCCCCCHHHHHHHHHHHHHhcCCcEEEE
Q psy1502 450 QEVELKDMIMEG-AGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATANVDPKTDLLIQRTIRKKFADCTVLT 528 (597)
Q Consensus 450 ~~a~l~~fI~~l-~GldT~vge~G~~LSGGQrQRIaIARAll~~p~ILILDEaTSaLD~~te~~I~~~l~~~~~~~TvI~ 528 (597)
+.+++++++..+ +||||.|||+|.+|||||||||||||||+++|+|||||||||+||+++|+.|++.|++..+++|+|+
T Consensus 1146 ~~~~~~~~i~~l~~gldt~vge~G~~LSgGq~Qrv~iARal~~~p~iLiLDEpTs~lD~~~~~~i~~~l~~~~~~~tvi~ 1225 (1284)
T 3g5u_A 1146 KEANIHQFIDSLPDKYNTRVGDKGTQLSGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEALDKAREGRTCIV 1225 (1284)
T ss_dssp HHHTCHHHHSSTTTGGGCBCSTTSCSSCHHHHHHHHHHHHHHHCCSSEEEESCSSSCCHHHHHHHHHHHHHHSSSSCEEE
T ss_pred HHhCcHHHHHhCccccccccCCCCCccCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHhCCCCEEEE
Confidence 999999999998 9999999999999999999999999999999999999999999999999999999999888999999
Q ss_pred eccCchhHhhcCEEEEEeCCeEEE--------ecCchhHhhHhhhc
Q psy1502 529 IAHRLHTIMDSDKVLVMDSGVAVV--------SSFGFFFSKDLIEG 566 (597)
Q Consensus 529 IaHrlsti~~~D~Iivl~~G~Ive--------~~~g~y~~l~~~~~ 566 (597)
||||++++++||||+||++|+|+| +++|.|++||+.+.
T Consensus 1226 isH~l~~i~~~dri~vl~~G~i~~~g~~~~l~~~~g~y~~l~~~q~ 1271 (1284)
T 3g5u_A 1226 IAHRLSTIQNADLIVVIQNGKVKEHGTHQQLLAQKGIYFSMVSVQA 1271 (1284)
T ss_dssp ECSCTTGGGSCSEEEEEETBEEEEEECHHHHHHSCSHHHHHHHHHC
T ss_pred EecCHHHHHcCCEEEEEECCEEEEECCHHHHHhCCCHHHHHHHHHh
Confidence 999999999999999999999999 67899999998554
No 11
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=100.00 E-value=3.2e-67 Score=539.84 Aligned_cols=264 Identities=30% Similarity=0.487 Sum_probs=236.0
Q ss_pred HHHHHHHHHHHHHHHhhccCCCCCCCCCCCCCCCCCCCcccEEEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCC
Q psy1502 300 AEVENHMISVKRLVEYTKLEPEGNLSPNYEDENEIWPVLGKIEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAG 379 (597)
Q Consensus 300 ~~~~~~~~s~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsG 379 (597)
..++.+.++++|++++++.+++...... .....+..+.|+|+||+|+|++++++|+||||+|++||++|||||||||
T Consensus 16 ~~~~~~~~~~~ri~~~l~~~~~~~~~~~---~~~~~~~~~~i~~~~vs~~y~~~~~vL~~isl~i~~Ge~vaivG~sGsG 92 (306)
T 3nh6_A 16 PRGSHMFIDMENMFDLLKEETEVKDLPG---AGPLRFQKGRIEFENVHFSYADGRETLQDVSFTVMPGQTLALVGPSGAG 92 (306)
T ss_dssp ---CCTTCCHHHHHHHHHHHHSCCCCTT---CBCCCCSSCCEEEEEEEEESSTTCEEEEEEEEEECTTCEEEEESSSCHH
T ss_pred hhHHHHHHHHHHHHHHHhCCcccccccc---ccccCCCCCeEEEEEEEEEcCCCCceeeeeeEEEcCCCEEEEECCCCch
Confidence 4566778899999999876544321111 1111123568999999999976678999999999999999999999999
Q ss_pred HHHHHHHHhcccc-CCceEEEcceeCCCCChHHHhcCcEEEeCCCCCCCccHHhhcccCC-CCChHHHHHHHHHhcHHHH
Q psy1502 380 KSSLIAAIFRLAE-VEGVIKIDDIDTEDVPLSKLRSNISIIPQDPVLFSGTLRKNLDPFE-KYPDYVLWTALQEVELKDM 457 (597)
Q Consensus 380 KSTL~~LL~~l~~-~~G~I~idg~di~~~~~~~lr~~I~~V~Q~~~LF~gTI~eNI~~~~-~~~~e~i~~a~~~a~l~~f 457 (597)
||||+++|+|+|+ ++|+|.+||+|+.+++...+|++||||||+|+||++||+|||.++. ..++++++++++.++++++
T Consensus 93 KSTLl~ll~gl~~p~~G~I~i~G~~i~~~~~~~~r~~i~~v~Q~~~lf~~Tv~eNi~~~~~~~~~~~~~~~~~~~~l~~~ 172 (306)
T 3nh6_A 93 KSTILRLLFRFYDISSGCIRIDGQDISQVTQASLRSHIGVVPQDTVLFNDTIADNIRYGRVTAGNDEVEAAAQAAGIHDA 172 (306)
T ss_dssp HHHHHHHHTTSSCCSEEEEEETTEETTSBCHHHHHHTEEEECSSCCCCSEEHHHHHHTTSTTCCHHHHHHHHHHHTCHHH
T ss_pred HHHHHHHHHcCCCCCCcEEEECCEEcccCCHHHHhcceEEEecCCccCcccHHHHHHhhcccCCHHHHHHHHHHhCcHHH
Confidence 9999999999995 7899999999999999999999999999999999999999999875 5788999999999999999
Q ss_pred HHhc-CCCchhhhCCCCCCChhHHHHHHHHHHHccCCCEEEeecCCCCCCHHHHHHHHHHHHHhcCCcEEEEeccCchhH
Q psy1502 458 IMEG-AGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATANVDPKTDLLIQRTIRKKFADCTVLTIAHRLHTI 536 (597)
Q Consensus 458 I~~l-~GldT~vge~G~~LSGGQrQRIaIARAll~~p~ILILDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrlsti 536 (597)
+..+ +||+|.+|++|.+|||||||||||||||+++|+|||||||||+||++++..|++.|.++.+++|+|+||||++++
T Consensus 173 i~~lp~gl~t~~~~~g~~LSGGqrQRvaiARAL~~~p~iLlLDEPts~LD~~~~~~i~~~l~~l~~~~Tvi~itH~l~~~ 252 (306)
T 3nh6_A 173 IMAFPEGYRTQVGERGLKLSGGEKQRVAIARTILKAPGIILLDEATSALDTSNERAIQASLAKVCANRTTIVVAHRLSTV 252 (306)
T ss_dssp HHHSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCSEEEEECCSSCCCHHHHHHHHHHHHHHHTTSEEEEECCSHHHH
T ss_pred HHhccchhhhHhcCCcCCCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEEcChHHH
Confidence 9998 999999999999999999999999999999999999999999999999999999999998899999999999999
Q ss_pred hhcCEEEEEeCCeEEE--------ecCchhHhhHhhhc
Q psy1502 537 MDSDKVLVMDSGVAVV--------SSFGFFFSKDLIEG 566 (597)
Q Consensus 537 ~~~D~Iivl~~G~Ive--------~~~g~y~~l~~~~~ 566 (597)
..||+|+||++|+|++ +.+|.|+++|..+.
T Consensus 253 ~~aD~i~vl~~G~iv~~G~~~el~~~~~~y~~l~~~q~ 290 (306)
T 3nh6_A 253 VNADQILVIKDGCIVERGRHEALLSRGGVYADMWQLQQ 290 (306)
T ss_dssp HTCSEEEEEETTEEEEEECHHHHHHHTSHHHHHHHHHH
T ss_pred HcCCEEEEEECCEEEEECCHHHHHhcChHHHHHHHHHH
Confidence 9999999999999998 56788999997543
No 12
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=100.00 E-value=1e-55 Score=442.77 Aligned_cols=214 Identities=36% Similarity=0.511 Sum_probs=201.8
Q ss_pred ccEEEEeeEEEeC-CCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc-cCCceEEEcceeCCCCChHHHhcCc
Q psy1502 339 GKIEFQNTNVRYL-SGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EVEGVIKIDDIDTEDVPLSKLRSNI 416 (597)
Q Consensus 339 ~~I~f~nVsf~Y~-~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I~idg~di~~~~~~~lr~~I 416 (597)
.+|+++||+|+|+ +++++|+|+||+|++||++||+||||||||||+++|+|++ |++|+|.+||.++.+.+...+|++|
T Consensus 6 ~~~~~~~l~~~y~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~i~g~~~~~~~~~~~~~~i 85 (247)
T 2ff7_A 6 HDITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRRQV 85 (247)
T ss_dssp EEEEEEEEEEESSTTSCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHHE
T ss_pred CceeEEEEEEEeCCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHHhcE
Confidence 4699999999994 3567999999999999999999999999999999999998 4789999999999999888899999
Q ss_pred EEEeCCCCCCCccHHhhcccCC-CCChHHHHHHHHHhcHHHHHHhc-CCCchhhhCCCCCCChhHHHHHHHHHHHccCCC
Q psy1502 417 SIIPQDPVLFSGTLRKNLDPFE-KYPDYVLWTALQEVELKDMIMEG-AGLNMTVYEGGTNFSVGQRQLICLARAIVRNNV 494 (597)
Q Consensus 417 ~~V~Q~~~LF~gTI~eNI~~~~-~~~~e~i~~a~~~a~l~~fI~~l-~GldT~vge~G~~LSGGQrQRIaIARAll~~p~ 494 (597)
+||||+|.+|++|++||+.++. ..+++++.++++.+++.+++..+ .|+++.+++.+.+||||||||++|||||+++|+
T Consensus 86 ~~v~Q~~~l~~~tv~enl~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qRv~iAraL~~~p~ 165 (247)
T 2ff7_A 86 GVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPK 165 (247)
T ss_dssp EEECSSCCCTTSBHHHHHTTTCTTCCHHHHHHHHHHHTCHHHHHTSTTGGGCBCSTTTTCCCHHHHHHHHHHHHHTTCCS
T ss_pred EEEeCCCccccccHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCcchhhhhhhCCCCCCCHHHHHHHHHHHHHhcCCC
Confidence 9999999999999999999863 45678899999999999999987 899999999999999999999999999999999
Q ss_pred EEEeecCCCCCCHHHHHHHHHHHHHhcCCcEEEEeccCchhHhhcCEEEEEeCCeEEE
Q psy1502 495 ILVLDEATANVDPKTDLLIQRTIRKKFADCTVLTIAHRLHTIMDSDKVLVMDSGVAVV 552 (597)
Q Consensus 495 ILILDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrlsti~~~D~Iivl~~G~Ive 552 (597)
+||||||||+||+.++..+.+.|+++.+++|+|+|||+++.+..||+|++|++|++++
T Consensus 166 lllLDEPts~LD~~~~~~i~~~l~~~~~g~tviivtH~~~~~~~~d~v~~l~~G~i~~ 223 (247)
T 2ff7_A 166 ILIFDEATSALDYESEHVIMRNMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVE 223 (247)
T ss_dssp EEEECCCCSCCCHHHHHHHHHHHHHHHTTSEEEEECSSGGGGTTSSEEEEEETTEEEE
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHhCCEEEEEECCEEEE
Confidence 9999999999999999999999998877899999999999998899999999999987
No 13
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=100.00 E-value=3.4e-55 Score=442.34 Aligned_cols=214 Identities=31% Similarity=0.492 Sum_probs=201.2
Q ss_pred ccEEEEeeEEEeCCC--CccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccccCCceEEEcceeCCCCChHHHhcCc
Q psy1502 339 GKIEFQNTNVRYLSG--PRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAEVEGVIKIDDIDTEDVPLSKLRSNI 416 (597)
Q Consensus 339 ~~I~f~nVsf~Y~~~--~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~~~~G~I~idg~di~~~~~~~lr~~I 416 (597)
+.|+++||+|+|++. +++|+|+||+|++|+++||+||||||||||+++|+|+++++|+|.+||.|+.+.+...+|++|
T Consensus 16 ~~l~i~~l~~~y~~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~G~I~i~g~~i~~~~~~~~~~~i 95 (260)
T 2ghi_A 16 VNIEFSDVNFSYPKQTNHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYDAEGDIKIGGKNVNKYNRNSIRSII 95 (260)
T ss_dssp CCEEEEEEEECCTTCCSSCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCEEEEEETTEEGGGBCHHHHHTTE
T ss_pred CeEEEEEEEEEeCCCCcCceeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCeEEEECCEEhhhcCHHHHhccE
Confidence 459999999999653 469999999999999999999999999999999999987799999999999988888899999
Q ss_pred EEEeCCCCCCCccHHhhcccCC-CCChHHHHHHHHHhcHHHHHHhc-CCCchhhhCCCCCCChhHHHHHHHHHHHccCCC
Q psy1502 417 SIIPQDPVLFSGTLRKNLDPFE-KYPDYVLWTALQEVELKDMIMEG-AGLNMTVYEGGTNFSVGQRQLICLARAIVRNNV 494 (597)
Q Consensus 417 ~~V~Q~~~LF~gTI~eNI~~~~-~~~~e~i~~a~~~a~l~~fI~~l-~GldT~vge~G~~LSGGQrQRIaIARAll~~p~ 494 (597)
+||||+|.+|++|++|||.++. ..+++++.++++.+++.+++..+ +|++|.+++.+.+||||||||++|||||+++|+
T Consensus 96 ~~v~Q~~~l~~~tv~enl~~~~~~~~~~~~~~~l~~~~l~~~~~~l~~~~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~ 175 (260)
T 2ghi_A 96 GIVPQDTILFNETIKYNILYGKLDATDEEVIKATKSAQLYDFIEALPKKWDTIVGNKGMKLSGGERQRIAIARCLLKDPK 175 (260)
T ss_dssp EEECSSCCCCSEEHHHHHHTTCTTCCHHHHHHHHHHTTCHHHHHTSTTGGGCEESSSSBCCCHHHHHHHHHHHHHHHCCS
T ss_pred EEEcCCCcccccCHHHHHhccCCCCCHHHHHHHHHHhCCHHHHHhccccccccccCCcCcCCHHHHHHHHHHHHHHcCCC
Confidence 9999999999999999998753 45677889999999999999888 999999999999999999999999999999999
Q ss_pred EEEeecCCCCCCHHHHHHHHHHHHHhcCCcEEEEeccCchhHhhcCEEEEEeCCeEEE
Q psy1502 495 ILVLDEATANVDPKTDLLIQRTIRKKFADCTVLTIAHRLHTIMDSDKVLVMDSGVAVV 552 (597)
Q Consensus 495 ILILDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrlsti~~~D~Iivl~~G~Ive 552 (597)
|||||||||+||+.++..+.+.|.++.+++|+|+|||+++.+..||+|++|++|+|++
T Consensus 176 lllLDEPts~LD~~~~~~i~~~l~~l~~~~tviivtH~~~~~~~~d~i~~l~~G~i~~ 233 (260)
T 2ghi_A 176 IVIFDEATSSLDSKTEYLFQKAVEDLRKNRTLIIIAHRLSTISSAESIILLNKGKIVE 233 (260)
T ss_dssp EEEEECCCCTTCHHHHHHHHHHHHHHTTTSEEEEECSSGGGSTTCSEEEEEETTEEEE
T ss_pred EEEEECccccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHHhCCEEEEEECCEEEE
Confidence 9999999999999999999999999877899999999999998899999999999987
No 14
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=100.00 E-value=1.8e-55 Score=440.44 Aligned_cols=212 Identities=32% Similarity=0.531 Sum_probs=199.2
Q ss_pred EEEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc-cCCceEEEcceeCCCCChHHHhcCcEEE
Q psy1502 341 IEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EVEGVIKIDDIDTEDVPLSKLRSNISII 419 (597)
Q Consensus 341 I~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I~idg~di~~~~~~~lr~~I~~V 419 (597)
|+++||+|+|++++++|+|+||+|++|+++||+||||||||||+++|+|++ |++|+|.+||.++.+.+...+|++|+||
T Consensus 2 l~~~~l~~~y~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v 81 (243)
T 1mv5_A 2 LSARHVDFAYDDSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLENWRSQIGFV 81 (243)
T ss_dssp EEEEEEEECSSSSSCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCSBSCEEETTEESTTTSCSCCTTTCCEE
T ss_pred EEEEEEEEEeCCCCceEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHHhhEEEE
Confidence 789999999964567999999999999999999999999999999999998 5789999999999988877889999999
Q ss_pred eCCCCCCCccHHhhcccC--CCCChHHHHHHHHHhcHHHHHHhc-CCCchhhhCCCCCCChhHHHHHHHHHHHccCCCEE
Q psy1502 420 PQDPVLFSGTLRKNLDPF--EKYPDYVLWTALQEVELKDMIMEG-AGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVIL 496 (597)
Q Consensus 420 ~Q~~~LF~gTI~eNI~~~--~~~~~e~i~~a~~~a~l~~fI~~l-~GldT~vge~G~~LSGGQrQRIaIARAll~~p~IL 496 (597)
||++.+|++|++|||.++ ...+++++.++++.+++.+++..+ .|+++.+++.+.+||||||||++|||||+++|++|
T Consensus 82 ~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qrv~lAral~~~p~ll 161 (243)
T 1mv5_A 82 SQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKIL 161 (243)
T ss_dssp CCSSCCCCEEHHHHTTSCTTSCSCHHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCSEE
T ss_pred cCCCccccccHHHHHhhhccCCCCHHHHHHHHHHhChHHHHHhCccchhchhccCcCcCCHHHHHHHHHHHHHhcCCCEE
Confidence 999999999999999986 346678899999999999988887 89999999999999999999999999999999999
Q ss_pred EeecCCCCCCHHHHHHHHHHHHHhcCCcEEEEeccCchhHhhcCEEEEEeCCeEEE
Q psy1502 497 VLDEATANVDPKTDLLIQRTIRKKFADCTVLTIAHRLHTIMDSDKVLVMDSGVAVV 552 (597)
Q Consensus 497 ILDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrlsti~~~D~Iivl~~G~Ive 552 (597)
|||||||+||+.++..+.+.|.++.+++|+|+|||+++.+..||+|++|++|++++
T Consensus 162 lLDEPts~LD~~~~~~i~~~l~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~G~i~~ 217 (243)
T 1mv5_A 162 MLDEATASLDSESESMVQKALDSLMKGRTTLVIAHRLSTIVDADKIYFIEKGQITG 217 (243)
T ss_dssp EEECCSCSSCSSSCCHHHHHHHHHHTTSEEEEECCSHHHHHHCSEEEEEETTEECC
T ss_pred EEECCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCChHHHHhCCEEEEEECCEEEE
Confidence 99999999999999999999998877899999999999998999999999999986
No 15
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=100.00 E-value=4.9e-54 Score=436.23 Aligned_cols=214 Identities=28% Similarity=0.418 Sum_probs=198.1
Q ss_pred ccEEEEeeEEEeCC--CCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc-cCCceEEEcceeCCCCChHHHhcC
Q psy1502 339 GKIEFQNTNVRYLS--GPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EVEGVIKIDDIDTEDVPLSKLRSN 415 (597)
Q Consensus 339 ~~I~f~nVsf~Y~~--~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I~idg~di~~~~~~~lr~~ 415 (597)
+.|+++||+|+|++ .+++|+||||+|++|+++||+||||||||||+++|+|++ |++|+|.+||.++.+.+...+|++
T Consensus 15 ~~l~~~~l~~~y~~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~ 94 (271)
T 2ixe_A 15 GLVKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGKVLLDGEPLVQYDHHYLHTQ 94 (271)
T ss_dssp CCEEEEEEEECCTTCTTSCCEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGBCHHHHHHH
T ss_pred ceEEEEEEEEEeCCCCCceeeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEEcccCCHHHHhcc
Confidence 46999999999964 257999999999999999999999999999999999998 578999999999998888888999
Q ss_pred cEEEeCCCCCCCccHHhhcccCC-CCCh-HHHHHHHHHhcHHHHHHhc-CCCchhhhCCCCCCChhHHHHHHHHHHHccC
Q psy1502 416 ISIIPQDPVLFSGTLRKNLDPFE-KYPD-YVLWTALQEVELKDMIMEG-AGLNMTVYEGGTNFSVGQRQLICLARAIVRN 492 (597)
Q Consensus 416 I~~V~Q~~~LF~gTI~eNI~~~~-~~~~-e~i~~a~~~a~l~~fI~~l-~GldT~vge~G~~LSGGQrQRIaIARAll~~ 492 (597)
|+||||++.+|++|++|||.++. ..++ +++.++++.+++.++++.+ +|+++.+++.+.+||||||||++|||||+++
T Consensus 95 i~~v~Q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgGq~QRv~lAraL~~~ 174 (271)
T 2ixe_A 95 VAAVGQEPLLFGRSFRENIAYGLTRTPTMEEITAVAMESGAHDFISGFPQGYDTEVGETGNQLSGGQRQAVALARALIRK 174 (271)
T ss_dssp EEEECSSCCCCSSBHHHHHHTTCSSCCCHHHHHHHHHHHTCHHHHHHSTTGGGSBCCGGGTTSCHHHHHHHHHHHHHTTC
T ss_pred EEEEecCCccccccHHHHHhhhcccCChHHHHHHHHHHHhHHHHHHhhhcchhhhhcCCcCCCCHHHHHHHHHHHHHhcC
Confidence 99999999999999999998853 3344 6778888888999999988 7999999999999999999999999999999
Q ss_pred CCEEEeecCCCCCCHHHHHHHHHHHHHhcC--CcEEEEeccCchhHhhcCEEEEEeCCeEEE
Q psy1502 493 NVILVLDEATANVDPKTDLLIQRTIRKKFA--DCTVLTIAHRLHTIMDSDKVLVMDSGVAVV 552 (597)
Q Consensus 493 p~ILILDEaTSaLD~~te~~I~~~l~~~~~--~~TvI~IaHrlsti~~~D~Iivl~~G~Ive 552 (597)
|+|||||||||+||+.+...+.+.|.++.+ ++|+|+|||+++.+..||+|++|++|+|++
T Consensus 175 p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~g~tviivtHd~~~~~~~d~v~~l~~G~i~~ 236 (271)
T 2ixe_A 175 PRLLILDNATSALDAGNQLRVQRLLYESPEWASRTVLLITQQLSLAERAHHILFLKEGSVCE 236 (271)
T ss_dssp CSEEEEESTTTTCCHHHHHHHHHHHHHCTTTTTSEEEEECSCHHHHTTCSEEEEEETTEEEE
T ss_pred CCEEEEECCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHHHHHhCCEEEEEECCEEEE
Confidence 999999999999999999999999998864 799999999999998899999999999987
No 16
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=100.00 E-value=6.4e-54 Score=454.30 Aligned_cols=218 Identities=36% Similarity=0.724 Sum_probs=206.9
Q ss_pred CCCcccEEEEeeEEEeC-CCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccccCCceEEEcceeCCCCChHHHh
Q psy1502 335 WPVLGKIEFQNTNVRYL-SGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAEVEGVIKIDDIDTEDVPLSKLR 413 (597)
Q Consensus 335 ~~~~~~I~f~nVsf~Y~-~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~~~~G~I~idg~di~~~~~~~lr 413 (597)
|+..+.|+++||+++|+ ++.++|+||||+|++||+++|+||||||||||+++|+|+++++|+|.+||+|+.+++...+|
T Consensus 14 ~~~~~~i~~~~l~~~y~~~~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~~~G~I~i~G~~i~~~~~~~~r 93 (390)
T 3gd7_A 14 WPSGGQMTVKDLTAKYTEGGNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLNTEGEIQIDGVSWDSITLEQWR 93 (390)
T ss_dssp SSSSCCEEEEEEEEESSSSSCCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTCSEEEEEEEESSCBTTSSCHHHHH
T ss_pred CCCCCeEEEEEEEEEecCCCeEEeeceeEEEcCCCEEEEECCCCChHHHHHHHHhCCCCCCeEEEECCEECCcCChHHHh
Confidence 45567899999999996 35679999999999999999999999999999999999988889999999999999999999
Q ss_pred cCcEEEeCCCCCCCccHHhhcccCCCCChHHHHHHHHHhcHHHHHHhc-CCCchhhhCCCCCCChhHHHHHHHHHHHccC
Q psy1502 414 SNISIIPQDPVLFSGTLRKNLDPFEKYPDYVLWTALQEVELKDMIMEG-AGLNMTVYEGGTNFSVGQRQLICLARAIVRN 492 (597)
Q Consensus 414 ~~I~~V~Q~~~LF~gTI~eNI~~~~~~~~e~i~~a~~~a~l~~fI~~l-~GldT~vge~G~~LSGGQrQRIaIARAll~~ 492 (597)
++|+||||++.+|++|++||+.+.....+++++++++.+++.++.... .+|+|.++++|.+||||||||+||||||+++
T Consensus 94 r~ig~v~Q~~~lf~~tv~enl~~~~~~~~~~v~~~l~~~~L~~~~~~~p~~l~~~i~~~g~~LSGGqrQRvalARAL~~~ 173 (390)
T 3gd7_A 94 KAFGVIPQKVFIFSGTFRKNLDPNAAHSDQEIWKVADEVGLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLSK 173 (390)
T ss_dssp HTEEEESCCCCCCSEEHHHHHCTTCCSCHHHHHHHHHHTTCHHHHTTSTTGGGCEECTTTTTSCHHHHHHHHHHHHHHTT
T ss_pred CCEEEEcCCcccCccCHHHHhhhccccCHHHHHHHHHHhCCHHHHhhcccccccccccccccCCHHHHHHHHHHHHHhcC
Confidence 999999999999999999999876667788999999999999999887 8899999999999999999999999999999
Q ss_pred CCEEEeecCCCCCCHHHHHHHHHHHHHhcCCcEEEEeccCchhHhhcCEEEEEeCCeEEE
Q psy1502 493 NVILVLDEATANVDPKTDLLIQRTIRKKFADCTVLTIAHRLHTIMDSDKVLVMDSGVAVV 552 (597)
Q Consensus 493 p~ILILDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrlsti~~~D~Iivl~~G~Ive 552 (597)
|++||||||||+||+.+...+++.|+++..++|+|+|||+++.+..||||++|++|+|++
T Consensus 174 P~lLLLDEPts~LD~~~~~~l~~~l~~~~~~~tvi~vtHd~e~~~~aDri~vl~~G~i~~ 233 (390)
T 3gd7_A 174 AKILLLDEPSAHLDPVTYQIIRRTLKQAFADCTVILCEARIEAMLECDQFLVIEENKVRQ 233 (390)
T ss_dssp CCEEEEESHHHHSCHHHHHHHHHHHHTTTTTSCEEEECSSSGGGTTCSEEEEEETTEEEE
T ss_pred CCEEEEeCCccCCCHHHHHHHHHHHHHHhCCCEEEEEEcCHHHHHhCCEEEEEECCEEEE
Confidence 999999999999999999999999999878899999999999999999999999999998
No 17
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=100.00 E-value=1.7e-51 Score=409.77 Aligned_cols=200 Identities=24% Similarity=0.362 Sum_probs=181.8
Q ss_pred cEEEEeeEEEeCC-CCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc-cCCceEEEcceeCCCCChHHHhcCcE
Q psy1502 340 KIEFQNTNVRYLS-GPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EVEGVIKIDDIDTEDVPLSKLRSNIS 417 (597)
Q Consensus 340 ~I~f~nVsf~Y~~-~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I~idg~di~~~~~~~lr~~I~ 417 (597)
.|+++||+|+|+. ++++|+|+||+|++|+++||+||||||||||+++|+|++ |++|+|.+|| +|+
T Consensus 3 ~l~~~~l~~~y~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g-------------~i~ 69 (237)
T 2cbz_A 3 SITVRNATFTWARSDPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVAIKG-------------SVA 69 (237)
T ss_dssp CEEEEEEEEESCTTSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTCSEEEEEEEEECS-------------CEE
T ss_pred eEEEEEEEEEeCCCCCceeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECC-------------EEE
Confidence 3899999999963 467999999999999999999999999999999999998 5789999998 499
Q ss_pred EEeCCCCCCCccHHhhcccCCCCChHHHHHHHHHhcHHHHHHhc-CCCchhhhCCCCCCChhHHHHHHHHHHHccCCCEE
Q psy1502 418 IIPQDPVLFSGTLRKNLDPFEKYPDYVLWTALQEVELKDMIMEG-AGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVIL 496 (597)
Q Consensus 418 ~V~Q~~~LF~gTI~eNI~~~~~~~~e~i~~a~~~a~l~~fI~~l-~GldT~vge~G~~LSGGQrQRIaIARAll~~p~IL 496 (597)
||||+|.+|+.|++|||.++...++++..++++.+++.+++..+ .|++|.+++.+.+||||||||++|||||+++|+||
T Consensus 70 ~v~Q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~ll 149 (237)
T 2cbz_A 70 YVPQQAWIQNDSLRENILFGCQLEEPYYRSVIQACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIY 149 (237)
T ss_dssp EECSSCCCCSEEHHHHHHTTSCCCTTHHHHHHHHTTCHHHHTTSTTGGGSEESTTSBCCCHHHHHHHHHHHHHHHCCSEE
T ss_pred EEcCCCcCCCcCHHHHhhCccccCHHHHHHHHHHHhhHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHhcCCCEE
Confidence 99999999999999999986544555667778888887777766 78999999999999999999999999999999999
Q ss_pred EeecCCCCCCHHHHHHHHHHHH---HhcCCcEEEEeccCchhHhhcCEEEEEeCCeEEE
Q psy1502 497 VLDEATANVDPKTDLLIQRTIR---KKFADCTVLTIAHRLHTIMDSDKVLVMDSGVAVV 552 (597)
Q Consensus 497 ILDEaTSaLD~~te~~I~~~l~---~~~~~~TvI~IaHrlsti~~~D~Iivl~~G~Ive 552 (597)
|||||||+||+.++..+.+.|. ++.+++|+|+|||+++.+..||+|++|++|+|++
T Consensus 150 lLDEPts~LD~~~~~~i~~~l~~~~~~~~~~tviivtH~~~~~~~~d~v~~l~~G~i~~ 208 (237)
T 2cbz_A 150 LFDDPLSAVDAHVGKHIFENVIGPKGMLKNKTRILVTHSMSYLPQVDVIIVMSGGKISE 208 (237)
T ss_dssp EEESTTTTSCHHHHHHHHHHTTSTTSTTTTSEEEEECSCSTTGGGSSEEEEEETTEEEE
T ss_pred EEeCcccccCHHHHHHHHHHHHHHHhhcCCCEEEEEecChHHHHhCCEEEEEeCCEEEE
Confidence 9999999999999999999984 4446899999999999998899999999999987
No 18
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=100.00 E-value=3.2e-51 Score=405.83 Aligned_cols=201 Identities=27% Similarity=0.400 Sum_probs=183.4
Q ss_pred ccEEEEeeEEEeCC-CCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc-cCCceEEEcceeCCCCChHHHhcCc
Q psy1502 339 GKIEFQNTNVRYLS-GPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EVEGVIKIDDIDTEDVPLSKLRSNI 416 (597)
Q Consensus 339 ~~I~f~nVsf~Y~~-~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I~idg~di~~~~~~~lr~~I 416 (597)
+.|+++||+|+|+. ++++|+|+||+|++|+.+||+||||||||||+++|+|++ |++|+|.+|| +|
T Consensus 5 ~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g-------------~i 71 (229)
T 2pze_A 5 TEVVMENVTAFWEEGGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG-------------RI 71 (229)
T ss_dssp EEEEEEEEEECSSTTSCCSEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEECS-------------CE
T ss_pred ceEEEEEEEEEeCCCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCccEEEECC-------------EE
Confidence 35999999999963 567999999999999999999999999999999999998 5789999998 59
Q ss_pred EEEeCCCCCCCccHHhhcccCCCCChHHHHHHHHHhcHHHHHHhc-CCCchhhhCCCCCCChhHHHHHHHHHHHccCCCE
Q psy1502 417 SIIPQDPVLFSGTLRKNLDPFEKYPDYVLWTALQEVELKDMIMEG-AGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVI 495 (597)
Q Consensus 417 ~~V~Q~~~LF~gTI~eNI~~~~~~~~e~i~~a~~~a~l~~fI~~l-~GldT~vge~G~~LSGGQrQRIaIARAll~~p~I 495 (597)
+||||+|.+|++|++||+.++....+....++++.+++.+++..+ .+++|.+++.+.+||||||||++|||||+++|++
T Consensus 72 ~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqrv~lAral~~~p~l 151 (229)
T 2pze_A 72 SFCSQFSWIMPGTIKENIIFGVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADL 151 (229)
T ss_dssp EEECSSCCCCSBCHHHHHHTTSCCCHHHHHHHHHHTTCHHHHTTSTTGGGSCBCTTCTTSCHHHHHHHHHHHHHHSCCSE
T ss_pred EEEecCCcccCCCHHHHhhccCCcChHHHHHHHHHhCcHHHHHhCcccccccccCCCCcCCHHHHHHHHHHHHHhcCCCE
Confidence 999999999999999999986544555667778888888888877 8899999999999999999999999999999999
Q ss_pred EEeecCCCCCCHHHHHHHHHHH-HHhcCCcEEEEeccCchhHhhcCEEEEEeCCeEEE
Q psy1502 496 LVLDEATANVDPKTDLLIQRTI-RKKFADCTVLTIAHRLHTIMDSDKVLVMDSGVAVV 552 (597)
Q Consensus 496 LILDEaTSaLD~~te~~I~~~l-~~~~~~~TvI~IaHrlsti~~~D~Iivl~~G~Ive 552 (597)
||||||||+||+.++..+.+.+ .++.+++|+|+|||+++.+..||+|++|++|++++
T Consensus 152 llLDEPts~LD~~~~~~i~~~l~~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~G~i~~ 209 (229)
T 2pze_A 152 YLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKILILHEGSSYF 209 (229)
T ss_dssp EEEESTTTTSCHHHHHHHHHHCCCCCTTTSEEEEECCCHHHHHHCSEEEEEETTEEEE
T ss_pred EEEECcccCCCHHHHHHHHHHHHHHhhCCCEEEEEcCChHHHHhCCEEEEEECCEEEE
Confidence 9999999999999999999874 55556899999999999998899999999999987
No 19
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=100.00 E-value=9.4e-50 Score=396.72 Aligned_cols=206 Identities=25% Similarity=0.332 Sum_probs=173.0
Q ss_pred EEEEeeEEEeCCC---CccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc-cCCceEEEcceeCCCCChHHH----
Q psy1502 341 IEFQNTNVRYLSG---PRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EVEGVIKIDDIDTEDVPLSKL---- 412 (597)
Q Consensus 341 I~f~nVsf~Y~~~---~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I~idg~di~~~~~~~l---- 412 (597)
|+++||+|+|+.+ .++|+|+||+|++||++||+||||||||||+++|+|++ |++|+|.+||.++.+++...+
T Consensus 2 l~~~~l~~~y~~~~~~~~~L~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~ 81 (235)
T 3tif_A 2 VKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKIR 81 (235)
T ss_dssp EEEEEEEEEEEETTEEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHH
T ss_pred EEEEEEEEEeCCCCcceeeEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHHh
Confidence 7899999999643 36999999999999999999999999999999999998 578999999999999987664
Q ss_pred hcCcEEEeCCCCCCCc-cHHhhcccC------CCCChHHHHHHHHHhcHHHHHHhcCCCchh-hhCCCCCCChhHHHHHH
Q psy1502 413 RSNISIIPQDPVLFSG-TLRKNLDPF------EKYPDYVLWTALQEVELKDMIMEGAGLNMT-VYEGGTNFSVGQRQLIC 484 (597)
Q Consensus 413 r~~I~~V~Q~~~LF~g-TI~eNI~~~------~~~~~e~i~~a~~~a~l~~fI~~l~GldT~-vge~G~~LSGGQrQRIa 484 (597)
|++||||||+|.+|.. |++||+.++ ...+.++..+.+ .+.... .|+... .......||||||||++
T Consensus 82 ~~~i~~v~Q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~-----~~~l~~-~~l~~~~~~~~~~~LSgGq~QRv~ 155 (235)
T 3tif_A 82 RDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRA-----LECLKM-AELEERFANHKPNQLSGGQQQRVA 155 (235)
T ss_dssp HHHEEEECTTCCCCTTSCHHHHHHHHHHTCSSSCCCHHHHHHHH-----HHHHHH-TTCCGGGTTCCGGGSCHHHHHHHH
T ss_pred hccEEEEecCCccCCCCcHHHHHHHHHHhhhccCCCHHHHHHHH-----HHHHHH-CCCChhhhhCChhhCCHHHHHHHH
Confidence 4579999999999986 999999642 123333222111 111111 344433 35667899999999999
Q ss_pred HHHHHccCCCEEEeecCCCCCCHHHHHHHHHHHHHhcC--CcEEEEeccCchhHhhcCEEEEEeCCeEEE
Q psy1502 485 LARAIVRNNVILVLDEATANVDPKTDLLIQRTIRKKFA--DCTVLTIAHRLHTIMDSDKVLVMDSGVAVV 552 (597)
Q Consensus 485 IARAll~~p~ILILDEaTSaLD~~te~~I~~~l~~~~~--~~TvI~IaHrlsti~~~D~Iivl~~G~Ive 552 (597)
|||||+.+|++||||||||+||+.+...+.+.|.++.+ ++|+|+|||+++..+.||+|++|++|+|++
T Consensus 156 iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~d~i~~l~~G~i~~ 225 (235)
T 3tif_A 156 IARALANNPPIILADQPTWALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDINVARFGERIIYLKDGEVER 225 (235)
T ss_dssp HHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHHHHTTSSEEEEEETTEEEE
T ss_pred HHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEcCCHHHHHhCCEEEEEECCEEEE
Confidence 99999999999999999999999999999999998753 799999999999888899999999999988
No 20
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=100.00 E-value=2.2e-49 Score=402.00 Aligned_cols=207 Identities=25% Similarity=0.399 Sum_probs=175.2
Q ss_pred cEEEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc-cCCceEEEcceeCC--CCChHHHhcCc
Q psy1502 340 KIEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EVEGVIKIDDIDTE--DVPLSKLRSNI 416 (597)
Q Consensus 340 ~I~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I~idg~di~--~~~~~~lr~~I 416 (597)
-|+++||+|+|++..++|+||||+|++||++||+||||||||||+++|+|++ |++|+|.+||.++. ..+...+|++|
T Consensus 7 ~l~i~~ls~~y~~~~~~L~~isl~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~~~i 86 (275)
T 3gfo_A 7 ILKVEELNYNYSDGTHALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRILFDNKPIDYSRKGIMKLRESI 86 (275)
T ss_dssp EEEEEEEEEECTTSCEEEEEEEEEEETTSEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCCSHHHHHHHHHSE
T ss_pred EEEEEEEEEEECCCCeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeEEEECCEECCcccccHHHHhCcE
Confidence 4899999999976667999999999999999999999999999999999998 57899999999994 33445688999
Q ss_pred EEEeCCC--CCCCccHHhhcccC---CCCChHHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHHHHHHcc
Q psy1502 417 SIIPQDP--VLFSGTLRKNLDPF---EKYPDYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVR 491 (597)
Q Consensus 417 ~~V~Q~~--~LF~gTI~eNI~~~---~~~~~e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaIARAll~ 491 (597)
|||||+| .+|+.|++||+.++ ...+.++..+.++ +.++. -|++........+||||||||++|||||+.
T Consensus 87 g~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~-----~~l~~-~~L~~~~~~~~~~LSgGqkQRv~iAraL~~ 160 (275)
T 3gfo_A 87 GIVFQDPDNQLFSASVYQDVSFGAVNMKLPEDEIRKRVD-----NALKR-TGIEHLKDKPTHCLSFGQKKRVAIAGVLVM 160 (275)
T ss_dssp EEECSSGGGTCCSSBHHHHHHHHHHTSCCCHHHHHHHHH-----HHHHH-TTCGGGTTSBGGGSCHHHHHHHHHHHHHTT
T ss_pred EEEEcCcccccccCcHHHHHHHHHHHcCCCHHHHHHHHH-----HHHHH-cCCchhhcCCcccCCHHHHHHHHHHHHHHc
Confidence 9999997 58889999999763 2334444332222 11111 345555566678999999999999999999
Q ss_pred CCCEEEeecCCCCCCHHHHHHHHHHHHHhc-C-CcEEEEeccCchhHhh-cCEEEEEeCCeEEE
Q psy1502 492 NNVILVLDEATANVDPKTDLLIQRTIRKKF-A-DCTVLTIAHRLHTIMD-SDKVLVMDSGVAVV 552 (597)
Q Consensus 492 ~p~ILILDEaTSaLD~~te~~I~~~l~~~~-~-~~TvI~IaHrlsti~~-~D~Iivl~~G~Ive 552 (597)
+|++||||||||+||+.+...+.+.|+++. + ++|+|+|||+++.+.. ||+|++|++|+|++
T Consensus 161 ~P~lLlLDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHdl~~~~~~~drv~~l~~G~i~~ 224 (275)
T 3gfo_A 161 EPKVLILDEPTAGLDPMGVSEIMKLLVEMQKELGITIIIATHDIDIVPLYCDNVFVMKEGRVIL 224 (275)
T ss_dssp CCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHCCEEEEEESCCSSGGGGCSEEEEEETTEEEE
T ss_pred CCCEEEEECccccCCHHHHHHHHHHHHHHHhhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEE
Confidence 999999999999999999999999998875 3 8999999999999975 99999999999998
No 21
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=100.00 E-value=8.2e-49 Score=391.32 Aligned_cols=207 Identities=21% Similarity=0.316 Sum_probs=175.2
Q ss_pred cEEEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc-cCCceEEEcceeCCCCChHHH-hcCcE
Q psy1502 340 KIEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EVEGVIKIDDIDTEDVPLSKL-RSNIS 417 (597)
Q Consensus 340 ~I~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I~idg~di~~~~~~~l-r~~I~ 417 (597)
-|+++||+|+|++ +++|+|+||+|++||.+||+||||||||||+++|+|++ |++|+|.+||.++.+.+...+ +++|+
T Consensus 6 ~l~~~~l~~~y~~-~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~ 84 (240)
T 1ji0_A 6 VLEVQSLHVYYGA-IHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRMGIA 84 (240)
T ss_dssp EEEEEEEEEEETT-EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHTTEE
T ss_pred eEEEEeEEEEECC-eeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCCHHHHHhCCEE
Confidence 3899999999964 57999999999999999999999999999999999998 578999999999988877655 55699
Q ss_pred EEeCCCCCCCc-cHHhhcccCC--CCChHHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHHHHHHccCCC
Q psy1502 418 IIPQDPVLFSG-TLRKNLDPFE--KYPDYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNV 494 (597)
Q Consensus 418 ~V~Q~~~LF~g-TI~eNI~~~~--~~~~e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaIARAll~~p~ 494 (597)
||||++.+|.+ |++||+.++. ..+.++..+.++ +.++.+.|++...+....+||||||||++|||||+++|+
T Consensus 85 ~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~-----~~l~~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~ 159 (240)
T 1ji0_A 85 LVPEGRRIFPELTVYENLMMGAYNRKDKEGIKRDLE-----WIFSLFPRLKERLKQLGGTLSGGEQQMLAIGRALMSRPK 159 (240)
T ss_dssp EECSSCCCCTTSBHHHHHHGGGTTCCCSSHHHHHHH-----HHHHHCHHHHTTTTSBSSSSCHHHHHHHHHHHHHTTCCS
T ss_pred EEecCCccCCCCcHHHHHHHhhhcCCCHHHHHHHHH-----HHHHHcccHhhHhcCChhhCCHHHHHHHHHHHHHHcCCC
Confidence 99999999987 9999998742 222233332222 222222234555667788999999999999999999999
Q ss_pred EEEeecCCCCCCHHHHHHHHHHHHHhc-CCcEEEEeccCchhHh-hcCEEEEEeCCeEEE
Q psy1502 495 ILVLDEATANVDPKTDLLIQRTIRKKF-ADCTVLTIAHRLHTIM-DSDKVLVMDSGVAVV 552 (597)
Q Consensus 495 ILILDEaTSaLD~~te~~I~~~l~~~~-~~~TvI~IaHrlsti~-~~D~Iivl~~G~Ive 552 (597)
+||||||||+||+.+...+.+.|+++. .++|+|+|||+++.+. .||+|++|++|++++
T Consensus 160 lllLDEPts~LD~~~~~~l~~~l~~~~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~ 219 (240)
T 1ji0_A 160 LLMMDEPSLGLAPILVSEVFEVIQKINQEGTTILLVEQNALGALKVAHYGYVLETGQIVL 219 (240)
T ss_dssp EEEEECTTTTCCHHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHCSEEEEEETTEEEE
T ss_pred EEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEE
Confidence 999999999999999999999998875 5899999999998775 699999999999987
No 22
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=100.00 E-value=3.5e-48 Score=404.97 Aligned_cols=203 Identities=28% Similarity=0.381 Sum_probs=175.9
Q ss_pred cEEEEeeEEEeCCC---CccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc-cCCceEEEcceeCCCCChHH---H
Q psy1502 340 KIEFQNTNVRYLSG---PRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EVEGVIKIDDIDTEDVPLSK---L 412 (597)
Q Consensus 340 ~I~f~nVsf~Y~~~---~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I~idg~di~~~~~~~---l 412 (597)
-|+++||+++|+.+ .++|+||||+|++||++||+||||||||||+++|+|++ |++|+|.+||.|+..++... +
T Consensus 24 mi~v~~ls~~y~~~~~~~~aL~~vsl~i~~Gei~~IiGpnGaGKSTLlr~i~GL~~p~~G~I~i~G~~i~~~~~~~~~~~ 103 (366)
T 3tui_C 24 MIKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKA 103 (366)
T ss_dssp CEEEEEEEEEEECSSSEEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECSSCCHHHHHHH
T ss_pred eEEEEeEEEEeCCCCCCeEEEEeeEEEEcCCCEEEEEcCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHHH
Confidence 59999999999642 36999999999999999999999999999999999998 57899999999999998665 4
Q ss_pred hcCcEEEeCCCCCCCc-cHHhhcccC---CCCChHH----HHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHH
Q psy1502 413 RSNISIIPQDPVLFSG-TLRKNLDPF---EKYPDYV----LWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLIC 484 (597)
Q Consensus 413 r~~I~~V~Q~~~LF~g-TI~eNI~~~---~~~~~e~----i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIa 484 (597)
|++||||||++.+|.. |++||+.++ ...+.++ +.++++.+ |++........+||||||||++
T Consensus 104 r~~Ig~v~Q~~~l~~~~TV~env~~~~~~~~~~~~~~~~~v~~lL~~v----------gL~~~~~~~~~~LSGGqkQRVa 173 (366)
T 3tui_C 104 RRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLV----------GLGDKHDSYPSNLSGGQKQRVA 173 (366)
T ss_dssp HTTEEEECSSCCCCTTSCHHHHHHHHHHHSCCCHHHHHHHHHHHHHHH----------TCGGGTTCCTTTSCHHHHHHHH
T ss_pred hCcEEEEeCCCccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHc----------CCchHhcCChhhCCHHHHHHHH
Confidence 7899999999999975 999999763 2334333 33333333 4444556667899999999999
Q ss_pred HHHHHccCCCEEEeecCCCCCCHHHHHHHHHHHHHhcC--CcEEEEeccCchhHhh-cCEEEEEeCCeEEE
Q psy1502 485 LARAIVRNNVILVLDEATANVDPKTDLLIQRTIRKKFA--DCTVLTIAHRLHTIMD-SDKVLVMDSGVAVV 552 (597)
Q Consensus 485 IARAll~~p~ILILDEaTSaLD~~te~~I~~~l~~~~~--~~TvI~IaHrlsti~~-~D~Iivl~~G~Ive 552 (597)
|||||+.+|+|||||||||+||+.+...|.+.|+++.+ ++|+|+|||+++.+.. ||||++|++|+|++
T Consensus 174 IArAL~~~P~lLLlDEPTs~LD~~~~~~i~~lL~~l~~~~g~Tii~vTHdl~~~~~~aDrv~vl~~G~iv~ 244 (366)
T 3tui_C 174 IARALASNPKVLLCDQATSALDPATTRSILELLKDINRRLGLTILLITHEMDVVKRICDCVAVISNGELIE 244 (366)
T ss_dssp HHHHTTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESCHHHHHHHCSEEEEEETTEEEE
T ss_pred HHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEE
Confidence 99999999999999999999999999999999988753 7999999999999975 99999999999998
No 23
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=100.00 E-value=3.8e-48 Score=382.53 Aligned_cols=206 Identities=20% Similarity=0.250 Sum_probs=172.1
Q ss_pred cEEEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc-cCCceEEEcceeCCCCChHH---Hh-c
Q psy1502 340 KIEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EVEGVIKIDDIDTEDVPLSK---LR-S 414 (597)
Q Consensus 340 ~I~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I~idg~di~~~~~~~---lr-~ 414 (597)
.|+++|++++|++ .++|+|+||+|++|+.+||+||||||||||+++|+|++ |++|+|.++|.++...+... +| +
T Consensus 4 ~l~~~~l~~~y~~-~~~l~~vsl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~ 82 (224)
T 2pcj_A 4 ILRAENIKKVIRG-YEILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTEGKVFLEGKEVDYTNEKELSLLRNR 82 (224)
T ss_dssp EEEEEEEEEEETT-EEEEEEEEEEEETTCEEEEEECTTSCHHHHHHHHTTSSCCSEEEEEETTEECCSSCHHHHHHHHHH
T ss_pred EEEEEeEEEEECC-EeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHHHHhC
Confidence 3899999999964 57999999999999999999999999999999999998 57899999999998877543 34 7
Q ss_pred CcEEEeCCCCCCC-ccHHhhcccCC---CCChHHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHHHHHHc
Q psy1502 415 NISIIPQDPVLFS-GTLRKNLDPFE---KYPDYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIV 490 (597)
Q Consensus 415 ~I~~V~Q~~~LF~-gTI~eNI~~~~---~~~~e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaIARAll 490 (597)
+|+||||++.+|. .|++||+.++. ..+.++..+ .+.+.++. -|++........+||||||||++|||||+
T Consensus 83 ~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~-----~~~~~l~~-~~l~~~~~~~~~~LSgGq~qrv~laral~ 156 (224)
T 2pcj_A 83 KLGFVFQFHYLIPELTALENVIVPMLKMGKPKKEAKE-----RGEYLLSE-LGLGDKLSRKPYELSGGEQQRVAIARALA 156 (224)
T ss_dssp HEEEECSSCCCCTTSCHHHHHHHHHHHTTCCHHHHHH-----HHHHHHHH-TTCTTCTTCCGGGSCHHHHHHHHHHHHTT
T ss_pred cEEEEecCcccCCCCCHHHHHHhHHHHcCCCHHHHHH-----HHHHHHHH-cCCchhhhCChhhCCHHHHHHHHHHHHHH
Confidence 8999999999987 59999997531 222221111 11122222 24444455666799999999999999999
Q ss_pred cCCCEEEeecCCCCCCHHHHHHHHHHHHHhc-CCcEEEEeccCchhHhhcCEEEEEeCCeEEE
Q psy1502 491 RNNVILVLDEATANVDPKTDLLIQRTIRKKF-ADCTVLTIAHRLHTIMDSDKVLVMDSGVAVV 552 (597)
Q Consensus 491 ~~p~ILILDEaTSaLD~~te~~I~~~l~~~~-~~~TvI~IaHrlsti~~~D~Iivl~~G~Ive 552 (597)
.+|++||||||||+||+.+...+.+.|.++. +++|+|+|||+++.+..||+|++|++|++++
T Consensus 157 ~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~~~~d~v~~l~~G~i~~ 219 (224)
T 2pcj_A 157 NEPILLFADEPTGNLDSANTKRVMDIFLKINEGGTSIVMVTHERELAELTHRTLEMKDGKVVG 219 (224)
T ss_dssp TCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHTTSSEEEEEETTEEEE
T ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHhCCEEEEEECCEEEE
Confidence 9999999999999999999999999998874 4799999999999987899999999999987
No 24
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=100.00 E-value=1.2e-47 Score=388.12 Aligned_cols=202 Identities=19% Similarity=0.229 Sum_probs=175.3
Q ss_pred cEEEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc-cCCceEEEcceeCCCCChHHHhcCcEE
Q psy1502 340 KIEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EVEGVIKIDDIDTEDVPLSKLRSNISI 418 (597)
Q Consensus 340 ~I~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I~idg~di~~~~~~~lr~~I~~ 418 (597)
-|+++||+++|+ ++++|+||||+|++||++||+||||||||||+++|+|++ |++|+|.++|.++...+...+++.++|
T Consensus 11 ~l~~~~l~~~~~-~~~vL~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~i~~ 89 (266)
T 4g1u_C 11 LLEASHLHYHVQ-QQALINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSPSHGECHLLGQNLNSWQPKALARTRAV 89 (266)
T ss_dssp EEEEEEEEEEET-TEEEEEEEEEEEETTCEEEEECCTTSCHHHHHHHHTSSSCCSSCEEEETTEETTTSCHHHHHHHEEE
T ss_pred eEEEEeEEEEeC-CeeEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCCHHHHhheEEE
Confidence 489999999995 467999999999999999999999999999999999998 578999999999999999999999999
Q ss_pred EeCCCCC-CCccHHhhcccCCC-----CChHHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHHHHHHcc-
Q psy1502 419 IPQDPVL-FSGTLRKNLDPFEK-----YPDYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVR- 491 (597)
Q Consensus 419 V~Q~~~L-F~gTI~eNI~~~~~-----~~~e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaIARAll~- 491 (597)
|+|++.+ |+.|++||+.++.. ..++++.++++..++ .........+||||||||++|||||++
T Consensus 90 v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l----------~~~~~~~~~~LSgGq~QRv~iAraL~~~ 159 (266)
T 4g1u_C 90 MRQYSELAFPFSVSEVIQMGRAPYGGSQDRQALQQVMAQTDC----------LALAQRDYRVLSGGEQQRVQLARVLAQL 159 (266)
T ss_dssp ECSCCCCCSCCBHHHHHHGGGTTSCSTTHHHHHHHHHHHTTC----------STTTTSBGGGCCHHHHHHHHHHHHHHHT
T ss_pred EecCCccCCCCCHHHHHHhhhhhcCcHHHHHHHHHHHHHcCC----------hhHhcCCcccCCHHHHHHHHHHHHHhcc
Confidence 9999987 57899999976421 123345555544443 333344456899999999999999999
Q ss_pred -----CCCEEEeecCCCCCCHHHHHHHHHHHHHhcC--CcEEEEeccCchhHh-hcCEEEEEeCCeEEE
Q psy1502 492 -----NNVILVLDEATANVDPKTDLLIQRTIRKKFA--DCTVLTIAHRLHTIM-DSDKVLVMDSGVAVV 552 (597)
Q Consensus 492 -----~p~ILILDEaTSaLD~~te~~I~~~l~~~~~--~~TvI~IaHrlsti~-~~D~Iivl~~G~Ive 552 (597)
+|++||||||||+||+.+...+.+.|+++.+ ++|+|+|||+++.+. .||+|++|++|+|++
T Consensus 160 ~~~~~~p~lLllDEPts~LD~~~~~~i~~~l~~l~~~~~~tvi~vtHdl~~~~~~~d~v~vl~~G~i~~ 228 (266)
T 4g1u_C 160 WQPQPTPRWLFLDEPTSALDLYHQQHTLRLLRQLTRQEPLAVCCVLHDLNLAALYADRIMLLAQGKLVA 228 (266)
T ss_dssp CCSSCCCEEEEECCCCSSCCHHHHHHHHHHHHHHHHHSSEEEEEECSCHHHHHHHCSEEEEEETTEEEE
T ss_pred cccCCCCCEEEEeCccccCCHHHHHHHHHHHHHHHHcCCCEEEEEEcCHHHHHHhCCEEEEEECCEEEE
Confidence 9999999999999999999999999988753 479999999999987 599999999999998
No 25
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=100.00 E-value=2.5e-47 Score=384.73 Aligned_cols=206 Identities=25% Similarity=0.372 Sum_probs=172.8
Q ss_pred cEEEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc-cCCceEEEcceeCC--CCChHHHhcCc
Q psy1502 340 KIEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EVEGVIKIDDIDTE--DVPLSKLRSNI 416 (597)
Q Consensus 340 ~I~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I~idg~di~--~~~~~~lr~~I 416 (597)
.|+++||+|+|+ ++++|+||||+|++||++||+||||||||||+++|+|++ |++|+|.+||.++. ..+...+|++|
T Consensus 24 ~l~i~~l~~~y~-~~~vL~~vsl~i~~Gei~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~~i 102 (263)
T 2olj_A 24 MIDVHQLKKSFG-SLEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLNKVREEV 102 (263)
T ss_dssp SEEEEEEEEEET-TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEESSSTTCCHHHHHHHE
T ss_pred eEEEEeEEEEEC-CEEEEEeeEEEEcCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCEECCCccccHHHHhCcE
Confidence 499999999995 357999999999999999999999999999999999998 57899999999985 34456678899
Q ss_pred EEEeCCCCCCCc-cHHhhcccCC----CCChHHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHHHHHHcc
Q psy1502 417 SIIPQDPVLFSG-TLRKNLDPFE----KYPDYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVR 491 (597)
Q Consensus 417 ~~V~Q~~~LF~g-TI~eNI~~~~----~~~~e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaIARAll~ 491 (597)
+||||++.+|.. |++||+.++. ..+.++..+. +.+.++. -|++........+||||||||++|||||+.
T Consensus 103 ~~v~Q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~-----~~~~l~~-~~L~~~~~~~~~~LSgGqkQRv~lAraL~~ 176 (263)
T 2olj_A 103 GMVFQRFNLFPHMTVLNNITLAPMKVRKWPREKAEAK-----AMELLDK-VGLKDKAHAYPDSLSGGQAQRVAIARALAM 176 (263)
T ss_dssp EEECSSCCCCTTSCHHHHHHHHHHHTSCCCHHHHHHH-----HHHHHHH-TTCGGGTTSCGGGSCHHHHHHHHHHHHHTT
T ss_pred EEEeCCCcCCCCCCHHHHHHHHHHHHcCCCHHHHHHH-----HHHHHHH-CCCchHhcCChhhCCHHHHHHHHHHHHHHC
Confidence 999999999976 9999997631 2232221111 1122222 245545566678999999999999999999
Q ss_pred CCCEEEeecCCCCCCHHHHHHHHHHHHHhc-CCcEEEEeccCchhHh-hcCEEEEEeCCeEEE
Q psy1502 492 NNVILVLDEATANVDPKTDLLIQRTIRKKF-ADCTVLTIAHRLHTIM-DSDKVLVMDSGVAVV 552 (597)
Q Consensus 492 ~p~ILILDEaTSaLD~~te~~I~~~l~~~~-~~~TvI~IaHrlsti~-~~D~Iivl~~G~Ive 552 (597)
+|++||||||||+||+.+...+.+.|+++. +++|+|+|||+++.+. .||+|++|++|+|++
T Consensus 177 ~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~ 239 (263)
T 2olj_A 177 EPKIMLFDEPTSALDPEMVGEVLSVMKQLANEGMTMVVVTHEMGFAREVGDRVLFMDGGYIIE 239 (263)
T ss_dssp CCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEETTEEEE
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHhCCEEEEEECCEEEE
Confidence 999999999999999999999999998874 3789999999999987 599999999999987
No 26
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=100.00 E-value=4.2e-47 Score=381.74 Aligned_cols=202 Identities=19% Similarity=0.320 Sum_probs=174.5
Q ss_pred ccEEEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc-cCCceEEEcceeCCCCChHHHhcCcE
Q psy1502 339 GKIEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EVEGVIKIDDIDTEDVPLSKLRSNIS 417 (597)
Q Consensus 339 ~~I~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I~idg~di~~~~~~~lr~~I~ 417 (597)
+.|+++||+++|+ ++++|+|+||+|++||.+||+||||||||||+++|+|++ |++|+|.++|.++.. ....+|++|+
T Consensus 14 ~~l~i~~l~~~y~-~~~vl~~vsl~i~~Gei~~l~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~-~~~~~~~~i~ 91 (256)
T 1vpl_A 14 GAVVVKDLRKRIG-KKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVE-EPHEVRKLIS 91 (256)
T ss_dssp CCEEEEEEEEEET-TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEETTT-CHHHHHTTEE
T ss_pred CeEEEEEEEEEEC-CEEEEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCc-cHHHHhhcEE
Confidence 4699999999995 457999999999999999999999999999999999998 578999999999976 5567889999
Q ss_pred EEeCCCCCCCc-cHHhhcccCC---CCChH----HHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHHHHHH
Q psy1502 418 IIPQDPVLFSG-TLRKNLDPFE---KYPDY----VLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAI 489 (597)
Q Consensus 418 ~V~Q~~~LF~g-TI~eNI~~~~---~~~~e----~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaIARAl 489 (597)
||||++.+|.+ |++||+.++. ..+.+ ++.++++.. |++........+||||||||++|||||
T Consensus 92 ~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~----------gL~~~~~~~~~~LSgGq~qRv~lAraL 161 (256)
T 1vpl_A 92 YLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERATEIA----------GLGEKIKDRVSTYSKGMVRKLLIARAL 161 (256)
T ss_dssp EECTTCCCCTTSBHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH----------CCGGGGGSBGGGCCHHHHHHHHHHHHH
T ss_pred EEcCCCCCCCCCcHHHHHHHHHHHcCCChHHHHHHHHHHHHHC----------CCchHhcCChhhCCHHHHHHHHHHHHH
Confidence 99999999986 9999997631 22322 233333333 444445556779999999999999999
Q ss_pred ccCCCEEEeecCCCCCCHHHHHHHHHHHHHhc-CCcEEEEeccCchhHhh-cCEEEEEeCCeEEE
Q psy1502 490 VRNNVILVLDEATANVDPKTDLLIQRTIRKKF-ADCTVLTIAHRLHTIMD-SDKVLVMDSGVAVV 552 (597)
Q Consensus 490 l~~p~ILILDEaTSaLD~~te~~I~~~l~~~~-~~~TvI~IaHrlsti~~-~D~Iivl~~G~Ive 552 (597)
+.+|++||||||||+||+.+...+.+.|.++. +++|+|++||+++.+.. ||++++|++|++++
T Consensus 162 ~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~~~~~~~d~v~~l~~G~i~~ 226 (256)
T 1vpl_A 162 MVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTILVSSHNMLEVEFLCDRIALIHNGTIVE 226 (256)
T ss_dssp TTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEEECCHHHHTTTCSEEEEEETTEEEE
T ss_pred HcCCCEEEEeCCccccCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHHCCEEEEEECCEEEE
Confidence 99999999999999999999999999998875 47899999999999976 99999999999987
No 27
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=100.00 E-value=2.5e-47 Score=384.42 Aligned_cols=206 Identities=23% Similarity=0.239 Sum_probs=175.3
Q ss_pred cEEEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc-cCCceEEEcceeCCCCCh-HHHhcCcE
Q psy1502 340 KIEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EVEGVIKIDDIDTEDVPL-SKLRSNIS 417 (597)
Q Consensus 340 ~I~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I~idg~di~~~~~-~~lr~~I~ 417 (597)
.|+++||+++|++ .++|+||||+|++||.+||+||||||||||+++|+|++ |++|+|.+||.++.+.+. +.+|++|+
T Consensus 7 ~l~i~~l~~~y~~-~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~ 85 (257)
T 1g6h_A 7 ILRTENIVKYFGE-FKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHYGIV 85 (257)
T ss_dssp EEEEEEEEEEETT-EEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHTEE
T ss_pred EEEEeeeEEEECC-EeeEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhCCEE
Confidence 3899999999954 56999999999999999999999999999999999998 478999999999987764 34678899
Q ss_pred EEeCCCCCCC-ccHHhhcccCCC----------------CChHHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHH
Q psy1502 418 IIPQDPVLFS-GTLRKNLDPFEK----------------YPDYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQR 480 (597)
Q Consensus 418 ~V~Q~~~LF~-gTI~eNI~~~~~----------------~~~e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQr 480 (597)
||||++.+|. .|++||+.++.. .+.++.. ..+.+.++. -|++........+||||||
T Consensus 86 ~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~l~~-~~l~~~~~~~~~~LSgGqk 159 (257)
T 1g6h_A 86 RTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMV-----EKAFKILEF-LKLSHLYDRKAGELSGGQM 159 (257)
T ss_dssp ECCCCCGGGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHH-----HHHHHHHHH-TTCGGGTTSBGGGSCHHHH
T ss_pred EEccCCccCCCCcHHHHHHHHHhhhccCcccccccccccCCHHHHH-----HHHHHHHHH-cCCchhhCCCchhCCHHHH
Confidence 9999999986 699999976421 1111111 112333333 3677677777889999999
Q ss_pred HHHHHHHHHccCCCEEEeecCCCCCCHHHHHHHHHHHHHhcC-CcEEEEeccCchhHh-hcCEEEEEeCCeEEE
Q psy1502 481 QLICLARAIVRNNVILVLDEATANVDPKTDLLIQRTIRKKFA-DCTVLTIAHRLHTIM-DSDKVLVMDSGVAVV 552 (597)
Q Consensus 481 QRIaIARAll~~p~ILILDEaTSaLD~~te~~I~~~l~~~~~-~~TvI~IaHrlsti~-~~D~Iivl~~G~Ive 552 (597)
||++|||||+.+|++||||||||+||+.+...+.+.|+++.+ ++|+|+|||+++.+. .||+|++|++|++++
T Consensus 160 Qrv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~ 233 (257)
T 1g6h_A 160 KLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQIIA 233 (257)
T ss_dssp HHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCSTTGGGCSEEEEEETTEEEE
T ss_pred HHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEE
Confidence 999999999999999999999999999999999999988754 799999999999986 599999999999987
No 28
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=100.00 E-value=1e-47 Score=392.73 Aligned_cols=198 Identities=28% Similarity=0.414 Sum_probs=165.6
Q ss_pred cccEEEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhcccc-CCceEEEcceeCCCCChHHHhcCc
Q psy1502 338 LGKIEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAE-VEGVIKIDDIDTEDVPLSKLRSNI 416 (597)
Q Consensus 338 ~~~I~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~~-~~G~I~idg~di~~~~~~~lr~~I 416 (597)
.+.|+++||+|.| +++|+|+||+|++|+++||+||||||||||+++|+|+++ ++|+|.+|| +|
T Consensus 38 ~~~l~~~~l~~~~---~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g-------------~i 101 (290)
T 2bbs_A 38 DDSLSFSNFSLLG---TPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG-------------RI 101 (290)
T ss_dssp ------------C---CCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHTTSSCEEEEEEECCS-------------CE
T ss_pred CceEEEEEEEEcC---ceEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECC-------------EE
Confidence 3469999999964 469999999999999999999999999999999999984 789999998 59
Q ss_pred EEEeCCCCCCCccHHhhcccCCCCChHHHHHHHHHhcHHHHHHhc-CCCchhhhCCCCCCChhHHHHHHHHHHHccCCCE
Q psy1502 417 SIIPQDPVLFSGTLRKNLDPFEKYPDYVLWTALQEVELKDMIMEG-AGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVI 495 (597)
Q Consensus 417 ~~V~Q~~~LF~gTI~eNI~~~~~~~~e~i~~a~~~a~l~~fI~~l-~GldT~vge~G~~LSGGQrQRIaIARAll~~p~I 495 (597)
+||||++.+|++|++||+. +....+..+.++++.+++.+++..+ .+++|.+++.+.+||||||||++|||||+++|++
T Consensus 102 ~~v~Q~~~l~~~tv~enl~-~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~QRv~lAraL~~~p~l 180 (290)
T 2bbs_A 102 SFCSQNSWIMPGTIKENII-GVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADL 180 (290)
T ss_dssp EEECSSCCCCSSBHHHHHH-TTCCCHHHHHHHHHHTTCHHHHHTSTTGGGCBC----CCCCHHHHHHHHHHHHHHSCCSE
T ss_pred EEEeCCCccCcccHHHHhh-CcccchHHHHHHHHHhChHHHHHhccccccchhcCccCcCCHHHHHHHHHHHHHHCCCCE
Confidence 9999999999999999998 4334455566778888888888887 8899999999999999999999999999999999
Q ss_pred EEeecCCCCCCHHHHHHHHHHH-HHhcCCcEEEEeccCchhHhhcCEEEEEeCCeEEE
Q psy1502 496 LVLDEATANVDPKTDLLIQRTI-RKKFADCTVLTIAHRLHTIMDSDKVLVMDSGVAVV 552 (597)
Q Consensus 496 LILDEaTSaLD~~te~~I~~~l-~~~~~~~TvI~IaHrlsti~~~D~Iivl~~G~Ive 552 (597)
||||||||+||+.++..+.+.+ .++.+++|+|+|||+++.+..||+|++|++|++++
T Consensus 181 llLDEPts~LD~~~~~~i~~~ll~~~~~~~tviivtHd~~~~~~~d~i~~l~~G~i~~ 238 (290)
T 2bbs_A 181 YLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKILILHEGSSYF 238 (290)
T ss_dssp EEEESTTTTCCHHHHHHHHHHCCCCCTTTSEEEEECCCHHHHHHSSEEEEEETTEEEE
T ss_pred EEEECCcccCCHHHHHHHHHHHHHHhhCCCEEEEEecCHHHHHcCCEEEEEECCeEEE
Confidence 9999999999999999999874 45556899999999999998899999999999987
No 29
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=100.00 E-value=3.5e-47 Score=385.19 Aligned_cols=199 Identities=26% Similarity=0.372 Sum_probs=172.3
Q ss_pred EEEEeeEEEeC-CC---CccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc-cCCceEEEcceeCCCCChHHHhcC
Q psy1502 341 IEFQNTNVRYL-SG---PRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EVEGVIKIDDIDTEDVPLSKLRSN 415 (597)
Q Consensus 341 I~f~nVsf~Y~-~~---~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I~idg~di~~~~~~~lr~~ 415 (597)
|+++||+++|+ ++ +++|+|+||+|++|+++||+||||||||||+++|+|++ |++|+|.+||.++.+. .+|++
T Consensus 3 l~~~~l~~~y~~~~~~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~---~~~~~ 79 (266)
T 2yz2_A 3 IEVVNVSHIFHRGTPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSGDVLYDGERKKGY---EIRRN 79 (266)
T ss_dssp EEEEEEEEEESTTSTTCEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECCHH---HHGGG
T ss_pred EEEEEEEEEecCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEECchH---Hhhhh
Confidence 78999999996 33 57999999999999999999999999999999999998 5789999999998642 67889
Q ss_pred cEEEeCCC--CCCCccHHhhcccCCC--C----ChHHHHHHHHHhcHH--HHHHhcCCCchhhhCCCCCCChhHHHHHHH
Q psy1502 416 ISIIPQDP--VLFSGTLRKNLDPFEK--Y----PDYVLWTALQEVELK--DMIMEGAGLNMTVYEGGTNFSVGQRQLICL 485 (597)
Q Consensus 416 I~~V~Q~~--~LF~gTI~eNI~~~~~--~----~~e~i~~a~~~a~l~--~fI~~l~GldT~vge~G~~LSGGQrQRIaI 485 (597)
|+||||+| .+|+.|++||+.++.. . .++++.++++..++. ++ ......+||||||||++|
T Consensus 80 i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~----------~~~~~~~LSgGq~qRv~l 149 (266)
T 2yz2_A 80 IGIAFQYPEDQFFAERVFDEVAFAVKNFYPDRDPVPLVKKAMEFVGLDFDSF----------KDRVPFFLSGGEKRRVAI 149 (266)
T ss_dssp EEEECSSGGGGCCCSSHHHHHHHTTTTTCTTSCSHHHHHHHHHHTTCCHHHH----------TTCCGGGSCHHHHHHHHH
T ss_pred EEEEeccchhhcCCCcHHHHHHHHHHhcCCHHHHHHHHHHHHHHcCcCCccc----------ccCChhhCCHHHHHHHHH
Confidence 99999996 5778999999976421 1 234566666666554 33 334456899999999999
Q ss_pred HHHHccCCCEEEeecCCCCCCHHHHHHHHHHHHHhc-CCcEEEEeccCchhHhh-cCEEEEEeCCeEEE
Q psy1502 486 ARAIVRNNVILVLDEATANVDPKTDLLIQRTIRKKF-ADCTVLTIAHRLHTIMD-SDKVLVMDSGVAVV 552 (597)
Q Consensus 486 ARAll~~p~ILILDEaTSaLD~~te~~I~~~l~~~~-~~~TvI~IaHrlsti~~-~D~Iivl~~G~Ive 552 (597)
||||+++|+|||||||||+||+.+...+.+.|+++. +++|+|+|||+++.+.. ||++++|++|++++
T Consensus 150 AraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tii~vtHd~~~~~~~~d~v~~l~~G~i~~ 218 (266)
T 2yz2_A 150 ASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTLGKTVILISHDIETVINHVDRVVVLEKGKKVF 218 (266)
T ss_dssp HHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCTTTGGGCSEEEEEETTEEEE
T ss_pred HHHHHcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE
Confidence 999999999999999999999999999999998874 47999999999999875 99999999999987
No 30
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=100.00 E-value=2.5e-47 Score=385.22 Aligned_cols=202 Identities=23% Similarity=0.312 Sum_probs=171.5
Q ss_pred cEEEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc-cCCceEEEcceeCCC----------CC
Q psy1502 340 KIEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EVEGVIKIDDIDTED----------VP 408 (597)
Q Consensus 340 ~I~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I~idg~di~~----------~~ 408 (597)
.|+++||+++|++ .++|+||||+|++|+.+||+||||||||||+++|+|++ |++|+|.++|.++.. ++
T Consensus 6 ~l~i~~l~~~y~~-~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~ 84 (262)
T 1b0u_A 6 KLHVIDLHKRYGG-HEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQLKVAD 84 (262)
T ss_dssp CEEEEEEEEEETT-EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCEEECTTSSEEESC
T ss_pred eEEEeeEEEEECC-EEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEccccccccccccccC
Confidence 3899999999953 57999999999999999999999999999999999998 478999999999862 44
Q ss_pred h---HHHhcCcEEEeCCCCCCCc-cHHhhcccCC----CCChH----HHHHHHHHhcHHHHHHhcCCCchh-hhCCCCCC
Q psy1502 409 L---SKLRSNISIIPQDPVLFSG-TLRKNLDPFE----KYPDY----VLWTALQEVELKDMIMEGAGLNMT-VYEGGTNF 475 (597)
Q Consensus 409 ~---~~lr~~I~~V~Q~~~LF~g-TI~eNI~~~~----~~~~e----~i~~a~~~a~l~~fI~~l~GldT~-vge~G~~L 475 (597)
. ..+|++|+||||++.+|.. |++||+.++. ..+.+ ++.++++.. |++.. ......+|
T Consensus 85 ~~~~~~~~~~i~~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~----------~L~~~~~~~~~~~L 154 (262)
T 1b0u_A 85 KNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKHDARERALKYLAKV----------GIDERAQGKYPVHL 154 (262)
T ss_dssp HHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHT----------TCCHHHHTSCGGGS
T ss_pred hhhHHHHhcceEEEecCcccCCCCcHHHHHHhhHHHhcCCCHHHHHHHHHHHHHHc----------CCCchhhcCCcccC
Confidence 3 3467889999999999976 9999997631 22322 233333333 44444 55667799
Q ss_pred ChhHHHHHHHHHHHccCCCEEEeecCCCCCCHHHHHHHHHHHHHhcC-CcEEEEeccCchhHh-hcCEEEEEeCCeEEE
Q psy1502 476 SVGQRQLICLARAIVRNNVILVLDEATANVDPKTDLLIQRTIRKKFA-DCTVLTIAHRLHTIM-DSDKVLVMDSGVAVV 552 (597)
Q Consensus 476 SGGQrQRIaIARAll~~p~ILILDEaTSaLD~~te~~I~~~l~~~~~-~~TvI~IaHrlsti~-~~D~Iivl~~G~Ive 552 (597)
|||||||++|||||+.+|++||||||||+||+.+...+.+.|+++.+ ++|+|+|||+++.+. .||+|++|++|++++
T Consensus 155 SgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~ 233 (262)
T 1b0u_A 155 SGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIEE 233 (262)
T ss_dssp CHHHHHHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEECSCHHHHHHHCSEEEEEETTEEEE
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE
Confidence 99999999999999999999999999999999999999999988753 789999999999986 599999999999987
No 31
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=100.00 E-value=1.5e-46 Score=392.67 Aligned_cols=202 Identities=19% Similarity=0.291 Sum_probs=170.9
Q ss_pred cEEEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc-cCCceEEEcceeCCC--CChHHHhcCc
Q psy1502 340 KIEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EVEGVIKIDDIDTED--VPLSKLRSNI 416 (597)
Q Consensus 340 ~I~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I~idg~di~~--~~~~~lr~~I 416 (597)
.|+++||+++|+ +.++|+||||+|++||+++|+||||||||||+++|+|+. |++|+|.+||.++.+ ......+++|
T Consensus 4 ~l~i~~ls~~y~-~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~i~~~~~~~~~~~r~i 82 (359)
T 3fvq_A 4 ALHIGHLSKSFQ-NTPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEISLSGKTIFSKNTNLPVRERRL 82 (359)
T ss_dssp CEEEEEEEEEET-TEEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCSEEEEEETTEEEESSSCBCCGGGSCC
T ss_pred EEEEEeEEEEEC-CEEEEEeeEEEEcCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEECcccccccchhhCCE
Confidence 389999999995 457999999999999999999999999999999999998 578999999999833 2233457889
Q ss_pred EEEeCCCCCCC-ccHHhhcccCC---CCChH----HHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHHHHH
Q psy1502 417 SIIPQDPVLFS-GTLRKNLDPFE---KYPDY----VLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARA 488 (597)
Q Consensus 417 ~~V~Q~~~LF~-gTI~eNI~~~~---~~~~e----~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaIARA 488 (597)
|||+|++.||. .|++|||.++. ..+.+ ++.++++.. |++.........||||||||+|||||
T Consensus 83 g~vfQ~~~l~p~ltV~eni~~~l~~~~~~~~~~~~~v~~~l~~~----------gL~~~~~r~~~~LSGGq~QRValArA 152 (359)
T 3fvq_A 83 GYLVQEGVLFPHLTVYRNIAYGLGNGKGRTAQERQRIEAMLELT----------GISELAGRYPHELSGGQQQRAALARA 152 (359)
T ss_dssp EEECTTCCCCTTSCHHHHHHTTSTTSSCCSHHHHHHHHHHHHHH----------TCGGGTTSCGGGSCHHHHHHHHHHHH
T ss_pred EEEeCCCcCCCCCCHHHHHHHHHHHcCCChHHHHHHHHHHHHHc----------CCchHhcCChhhCCHHHHHHHHHHHH
Confidence 99999999996 59999998752 22322 233444333 44445566677999999999999999
Q ss_pred HccCCCEEEeecCCCCCCHHHHHHHHHHHHHhc--CCcEEEEeccCchhHhh-cCEEEEEeCCeEEE
Q psy1502 489 IVRNNVILVLDEATANVDPKTDLLIQRTIRKKF--ADCTVLTIAHRLHTIMD-SDKVLVMDSGVAVV 552 (597)
Q Consensus 489 ll~~p~ILILDEaTSaLD~~te~~I~~~l~~~~--~~~TvI~IaHrlsti~~-~D~Iivl~~G~Ive 552 (597)
|+.+|++||||||||+||+.+...+++.|.++. .+.|+|+|||+++.+.. ||||++|++|+|++
T Consensus 153 L~~~P~lLLLDEPts~LD~~~r~~l~~~l~~~~~~~g~tvi~vTHd~~ea~~~aDri~vl~~G~i~~ 219 (359)
T 3fvq_A 153 LAPDPELILLDEPFSALDEQLRRQIREDMIAALRANGKSAVFVSHDREEALQYADRIAVMKQGRILQ 219 (359)
T ss_dssp HTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHHHHCSEEEEEETTEEEE
T ss_pred HHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHCCEEEEEECCEEEE
Confidence 999999999999999999999999998776653 37899999999999864 99999999999998
No 32
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=100.00 E-value=2.5e-46 Score=393.45 Aligned_cols=204 Identities=23% Similarity=0.332 Sum_probs=174.1
Q ss_pred cEEEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc-cCCceEEEcceeCCCCChHHHhcCcEE
Q psy1502 340 KIEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EVEGVIKIDDIDTEDVPLSKLRSNISI 418 (597)
Q Consensus 340 ~I~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I~idg~di~~~~~~~lr~~I~~ 418 (597)
.|+++||+++|+ +.++|+||||+|++||.++|+||||||||||+++|+|++ |++|+|.+||.++...+.. ++.|||
T Consensus 3 ~l~~~~l~~~yg-~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~~~~~~~~--~r~ig~ 79 (381)
T 3rlf_A 3 SVQLQNVTKAWG-EVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPA--ERGVGM 79 (381)
T ss_dssp CEEEEEEEEEET-TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCGG--GSCEEE
T ss_pred EEEEEeEEEEEC-CEEEEeeeEEEECCCCEEEEEcCCCchHHHHHHHHHcCCCCCCeEEEECCEECCCCCHH--HCCEEE
Confidence 389999999995 457999999999999999999999999999999999998 5789999999999988765 578999
Q ss_pred EeCCCCCCC-ccHHhhcccC---CCCChHHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHHHHHHccCCC
Q psy1502 419 IPQDPVLFS-GTLRKNLDPF---EKYPDYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNV 494 (597)
Q Consensus 419 V~Q~~~LF~-gTI~eNI~~~---~~~~~e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaIARAll~~p~ 494 (597)
|+|++.||. .|++|||.++ ...+.++..+.++ +.++. -|++........+||||||||++|||||+.+|+
T Consensus 80 VfQ~~~l~p~ltV~eni~~~~~~~~~~~~~~~~~v~-----~~l~~-~~L~~~~~r~p~~LSGGqrQRVaiArAL~~~P~ 153 (381)
T 3rlf_A 80 VFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVN-----QVAEV-LQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPS 153 (381)
T ss_dssp ECTTCCCCTTSCHHHHHTHHHHHTTCCHHHHHHHHH-----HHHHH-TTCGGGTTCCGGGSCHHHHHHHHHHHHHHHCCS
T ss_pred EecCCcCCCCCCHHHHHHHHHHHcCCCHHHHHHHHH-----HHHHH-cCCchhhcCChhHCCHHHHHHHHHHHHHHcCCC
Confidence 999999997 4999999874 2344443332211 11111 345555566678999999999999999999999
Q ss_pred EEEeecCCCCCCHHHHHHHHHHHHHhcC--CcEEEEeccCchhHhh-cCEEEEEeCCeEEE
Q psy1502 495 ILVLDEATANVDPKTDLLIQRTIRKKFA--DCTVLTIAHRLHTIMD-SDKVLVMDSGVAVV 552 (597)
Q Consensus 495 ILILDEaTSaLD~~te~~I~~~l~~~~~--~~TvI~IaHrlsti~~-~D~Iivl~~G~Ive 552 (597)
+||||||||+||+.+...+.+.|+++.+ +.|+|+|||+++.+.. ||||+||++|+|++
T Consensus 154 lLLLDEPts~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~ea~~~aDri~vl~~G~i~~ 214 (381)
T 3rlf_A 154 VFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQ 214 (381)
T ss_dssp EEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHHHHHHHCSEEEEEETTEEEE
T ss_pred EEEEECCCcCCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhCCEEEEEECCEEEE
Confidence 9999999999999999999999988754 7899999999998864 99999999999998
No 33
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=100.00 E-value=1.8e-46 Score=381.83 Aligned_cols=202 Identities=17% Similarity=0.234 Sum_probs=172.2
Q ss_pred cEEEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc-cCCceEEEcceeCC--CCChHHHhcCc
Q psy1502 340 KIEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EVEGVIKIDDIDTE--DVPLSKLRSNI 416 (597)
Q Consensus 340 ~I~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I~idg~di~--~~~~~~lr~~I 416 (597)
.|+++||+++|++ +++|+||||+|++||++||+||||||||||+++|+|++ |++|+|.++|.++. ..+...+|++|
T Consensus 21 ~l~~~~l~~~y~~-~~vL~~isl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~i 99 (279)
T 2ihy_A 21 LIQLDQIGRMKQG-KTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATSGTVNLFGKMPGKVGYSAETVRQHI 99 (279)
T ss_dssp EEEEEEEEEEETT-EEEEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTBCCC---CCHHHHHTTE
T ss_pred eEEEEeEEEEECC-EEEEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCeEEEECCEEcccccCCHHHHcCcE
Confidence 4999999999964 57999999999999999999999999999999999998 57899999999998 77778889999
Q ss_pred EEEeCCCCC-CCc--cHHhhcccCCC--------CChH---HHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHH
Q psy1502 417 SIIPQDPVL-FSG--TLRKNLDPFEK--------YPDY---VLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQL 482 (597)
Q Consensus 417 ~~V~Q~~~L-F~g--TI~eNI~~~~~--------~~~e---~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQR 482 (597)
+||||++.+ |.. |++||+.++.. ..++ ++.++++. -|++........+||||||||
T Consensus 100 ~~v~Q~~~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~----------~gl~~~~~~~~~~LSgGqkqR 169 (279)
T 2ihy_A 100 GFVSHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEIRNEAHQLLKL----------VGMSAKAQQYIGYLSTGEKQR 169 (279)
T ss_dssp EEECHHHHTTSCTTSBHHHHHHTTC---------CCHHHHHHHHHHHHH----------TTCGGGTTSBGGGSCHHHHHH
T ss_pred EEEEcCcccccCCCCCHHHHHHhhhhhccccccCCcHHHHHHHHHHHHH----------cCChhHhcCChhhCCHHHHHH
Confidence 999999875 554 99999976421 1221 12222222 355555566677999999999
Q ss_pred HHHHHHHccCCCEEEeecCCCCCCHHHHHHHHHHHHHhcC-CcEE--EEeccCchhHh-hcCEEEEEeCCeEEE
Q psy1502 483 ICLARAIVRNNVILVLDEATANVDPKTDLLIQRTIRKKFA-DCTV--LTIAHRLHTIM-DSDKVLVMDSGVAVV 552 (597)
Q Consensus 483 IaIARAll~~p~ILILDEaTSaLD~~te~~I~~~l~~~~~-~~Tv--I~IaHrlsti~-~~D~Iivl~~G~Ive 552 (597)
++|||||+.+|++||||||||+||+.+...+.+.|+++.+ ++|+ |+|||+++.+. .||+|++|++|+|++
T Consensus 170 v~lAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tv~~iivtHd~~~~~~~~d~v~~l~~G~i~~ 243 (279)
T 2ihy_A 170 VMIARALMGQPQVLILDEPAAGLDFIARESLLSILDSLSDSYPTLAMIYVTHFIEEITANFSKILLLKDGQSIQ 243 (279)
T ss_dssp HHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHCTTCEEEEEESCGGGCCTTCCEEEEEETTEEEE
T ss_pred HHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHHHCCCEEEEEEEecCHHHHHHhCCEEEEEECCEEEE
Confidence 9999999999999999999999999999999999988754 7899 99999999985 599999999999987
No 34
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=100.00 E-value=4.3e-46 Score=373.91 Aligned_cols=205 Identities=21% Similarity=0.233 Sum_probs=163.7
Q ss_pred EEEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhcc--c-cCCceEEEcceeCCCCChHHH-hcCc
Q psy1502 341 IEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRL--A-EVEGVIKIDDIDTEDVPLSKL-RSNI 416 (597)
Q Consensus 341 I~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l--~-~~~G~I~idg~di~~~~~~~l-r~~I 416 (597)
|+++||+|+|++ .++|+|+||+|++||.+||+||||||||||+++|+|+ + |++|+|.+||.++.+.+...+ +..+
T Consensus 4 l~~~~l~~~y~~-~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~~~~~~~~~~~~~~i 82 (250)
T 2d2e_A 4 LEIRDLWASIDG-ETILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVERGEILLDGENILELSPDERARKGL 82 (250)
T ss_dssp EEEEEEEEEETT-EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTCTTCEEEEEEEEETTEECTTSCHHHHHHTTB
T ss_pred EEEEeEEEEECC-EEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEECCCCCHHHHHhCcE
Confidence 899999999964 5799999999999999999999999999999999998 6 578999999999998887665 4569
Q ss_pred EEEeCCCCCCCc-cHHhhcccCC----C--CChHHHHHHHHHhcHHHHHHhcCCCchhh-hCCCCC-CChhHHHHHHHHH
Q psy1502 417 SIIPQDPVLFSG-TLRKNLDPFE----K--YPDYVLWTALQEVELKDMIMEGAGLNMTV-YEGGTN-FSVGQRQLICLAR 487 (597)
Q Consensus 417 ~~V~Q~~~LF~g-TI~eNI~~~~----~--~~~e~i~~a~~~a~l~~fI~~l~GldT~v-ge~G~~-LSGGQrQRIaIAR 487 (597)
+||||+|.+|.+ |++||+.++. . ...++..+. +.+.++. -|+++.. ...... ||||||||++|||
T Consensus 83 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~-----~~~~l~~-~gl~~~~~~~~~~~~LSgGqkQrv~iAr 156 (250)
T 2d2e_A 83 FLAFQYPVEVPGVTIANFLRLALQAKLGREVGVAEFWTK-----VKKALEL-LDWDESYLSRYLNEGFSGGEKKRNEILQ 156 (250)
T ss_dssp CCCCCCCC-CCSCBHHHHHHHHHHHHHTSCCCHHHHHHH-----HHHHHHH-HTCCGGGGGSBTTCC----HHHHHHHHH
T ss_pred EEeccCCccccCCCHHHHHHHHHHhhccccCCHHHHHHH-----HHHHHHH-cCCChhHhcCCcccCCCHHHHHHHHHHH
Confidence 999999999985 9999996521 1 121111111 1122222 2453322 233345 9999999999999
Q ss_pred HHccCCCEEEeecCCCCCCHHHHHHHHHHHHHhcC-CcEEEEeccCchhHhh--cCEEEEEeCCeEEE
Q psy1502 488 AIVRNNVILVLDEATANVDPKTDLLIQRTIRKKFA-DCTVLTIAHRLHTIMD--SDKVLVMDSGVAVV 552 (597)
Q Consensus 488 All~~p~ILILDEaTSaLD~~te~~I~~~l~~~~~-~~TvI~IaHrlsti~~--~D~Iivl~~G~Ive 552 (597)
||+++|++||||||||+||+++...+.+.|+++.+ ++|+|+|||+++.+.. ||+|++|++|++++
T Consensus 157 aL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~~~~~~~d~v~~l~~G~i~~ 224 (250)
T 2d2e_A 157 LLVLEPTYAVLDETDSGLDIDALKVVARGVNAMRGPNFGALVITHYQRILNYIQPDKVHVMMDGRVVA 224 (250)
T ss_dssp HHHHCCSEEEEECGGGTTCHHHHHHHHHHHHHHCSTTCEEEEECSSSGGGGTSCCSEEEEEETTEEEE
T ss_pred HHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhcCCEEEEEECCEEEE
Confidence 99999999999999999999999999999998854 7899999999999986 59999999999987
No 35
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=100.00 E-value=1.4e-46 Score=376.41 Aligned_cols=196 Identities=18% Similarity=0.244 Sum_probs=173.6
Q ss_pred EEEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc-cCCceEEEcceeCCCCChHHHhcCcEEE
Q psy1502 341 IEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EVEGVIKIDDIDTEDVPLSKLRSNISII 419 (597)
Q Consensus 341 I~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I~idg~di~~~~~~~lr~~I~~V 419 (597)
|+++||+|+ ++|+|+||+|++|+.+||+||||||||||+++|+|++ |+ |+|.++|.++.+.+...+|++|+||
T Consensus 5 l~~~~l~~~-----~vl~~vsl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~-G~i~~~g~~~~~~~~~~~~~~i~~v 78 (249)
T 2qi9_C 5 MQLQDVAES-----TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSGK-GSIQFAGQPLEAWSATKLALHRAYL 78 (249)
T ss_dssp EEEEEEEET-----TTEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCE-EEEEETTEEGGGSCHHHHHHHEEEE
T ss_pred EEEEceEEE-----EEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC-eEEEECCEECCcCCHHHHhceEEEE
Confidence 899999986 5999999999999999999999999999999999998 57 9999999999988888899999999
Q ss_pred eCCCCCCCc-cHHhhcccCC--CCChHHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHHHHHHccCCC--
Q psy1502 420 PQDPVLFSG-TLRKNLDPFE--KYPDYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNV-- 494 (597)
Q Consensus 420 ~Q~~~LF~g-TI~eNI~~~~--~~~~e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaIARAll~~p~-- 494 (597)
||++.+|.+ |++||+.++. ..+++++.++++..++ +........+||||||||++|||||+++|+
T Consensus 79 ~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~l~~~~l----------~~~~~~~~~~LSgGq~qrv~lAraL~~~p~~~ 148 (249)
T 2qi9_C 79 SQQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGALAL----------DDKLGRSTNQLSGGEWQRVRLAAVVLQITPQA 148 (249)
T ss_dssp CSCCCCCTTCBHHHHHHTTCSSTTCHHHHHHHHHHTTC----------GGGTTSBGGGCCHHHHHHHHHHHHHHHHCTTT
T ss_pred CCCCccCCCCcHHHHHHHhhccCCcHHHHHHHHHHcCC----------hhHhcCChhhCCHHHHHHHHHHHHHHcCCCcC
Confidence 999998875 9999998753 1234556665555544 334455677999999999999999999999
Q ss_pred -----EEEeecCCCCCCHHHHHHHHHHHHHhc-CCcEEEEeccCchhH-hhcCEEEEEeCCeEEE
Q psy1502 495 -----ILVLDEATANVDPKTDLLIQRTIRKKF-ADCTVLTIAHRLHTI-MDSDKVLVMDSGVAVV 552 (597)
Q Consensus 495 -----ILILDEaTSaLD~~te~~I~~~l~~~~-~~~TvI~IaHrlsti-~~~D~Iivl~~G~Ive 552 (597)
+||||||||+||+.+...+.+.|+++. +++|+|+|||+++.+ ..||++++|++|++++
T Consensus 149 ~~~~~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~ 213 (249)
T 2qi9_C 149 NPAGQLLLLDEPMNSLDVAQQSALDKILSALSQQGLAIVMSSHDLNHTLRHAHRAWLLKGGKMLA 213 (249)
T ss_dssp CTTCCEEEESSTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEETTEEEE
T ss_pred CCCCeEEEEECCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE
Confidence 999999999999999999999998874 478999999999998 4699999999999987
No 36
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=100.00 E-value=8.7e-47 Score=376.08 Aligned_cols=196 Identities=26% Similarity=0.338 Sum_probs=166.8
Q ss_pred EEEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc-cCCceEEEcceeCCCCChHHHhcCcEEE
Q psy1502 341 IEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EVEGVIKIDDIDTEDVPLSKLRSNISII 419 (597)
Q Consensus 341 I~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I~idg~di~~~~~~~lr~~I~~V 419 (597)
|+++||+++|++ +|+|+||++++ +.+||+||||||||||+++|+|++ |++|+|.+||.++.+.+ .+|++|+||
T Consensus 2 l~~~~l~~~y~~---~l~~isl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~--~~~~~i~~v 75 (240)
T 2onk_A 2 FLKVRAEKRLGN---FRLNVDFEMGR-DYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLP--PERRGIGFV 75 (240)
T ss_dssp CEEEEEEEEETT---EEEEEEEEECS-SEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSC--TTTSCCBCC
T ss_pred EEEEEEEEEeCC---EEeeeEEEECC-EEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCc--hhhCcEEEE
Confidence 689999999953 59999999999 999999999999999999999998 57899999999997643 357889999
Q ss_pred eCCCCCCCc-cHHhhcccCCCC-C----hHHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHHHHHHccCC
Q psy1502 420 PQDPVLFSG-TLRKNLDPFEKY-P----DYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNN 493 (597)
Q Consensus 420 ~Q~~~LF~g-TI~eNI~~~~~~-~----~e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaIARAll~~p 493 (597)
||++.+|.. |++||+.++... . ++++.++++. -|++........+||||||||++|||||+++|
T Consensus 76 ~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~l~~----------~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p 145 (240)
T 2onk_A 76 PQDYALFPHLSVYRNIAYGLRNVERVERDRRVREMAEK----------LGIAHLLDRKPARLSGGERQRVALARALVIQP 145 (240)
T ss_dssp CSSCCCCTTSCHHHHHHTTCTTSCHHHHHHHHHHHHHT----------TTCTTTTTCCGGGSCHHHHHHHHHHHHHTTCC
T ss_pred cCCCccCCCCcHHHHHHHHHHHcCCchHHHHHHHHHHH----------cCCHHHhcCChhhCCHHHHHHHHHHHHHHcCC
Confidence 999999986 999999875322 1 1222222222 24444455566799999999999999999999
Q ss_pred CEEEeecCCCCCCHHHHHHHHHHHHHhcC--CcEEEEeccCchhHh-hcCEEEEEeCCeEEE
Q psy1502 494 VILVLDEATANVDPKTDLLIQRTIRKKFA--DCTVLTIAHRLHTIM-DSDKVLVMDSGVAVV 552 (597)
Q Consensus 494 ~ILILDEaTSaLD~~te~~I~~~l~~~~~--~~TvI~IaHrlsti~-~~D~Iivl~~G~Ive 552 (597)
++||||||||+||+.+...+.+.|.++.+ ++|+|++||+++.+. .||+|++|++|++++
T Consensus 146 ~lllLDEPts~LD~~~~~~~~~~l~~l~~~~g~tvi~vtHd~~~~~~~~d~i~~l~~G~i~~ 207 (240)
T 2onk_A 146 RLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLIEAAMLADEVAVMLNGRIVE 207 (240)
T ss_dssp SSBEEESTTSSCCHHHHHHHHHHHHHHHHHHTCCEEEEESCHHHHHHHCSEEEEEETTEEEE
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE
Confidence 99999999999999999999999988753 789999999999875 599999999999987
No 37
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=100.00 E-value=1.4e-46 Score=392.90 Aligned_cols=201 Identities=24% Similarity=0.377 Sum_probs=172.6
Q ss_pred cEEEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc-cCCceEEEcceeCCCCChHHHhcCcEE
Q psy1502 340 KIEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EVEGVIKIDDIDTEDVPLSKLRSNISI 418 (597)
Q Consensus 340 ~I~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I~idg~di~~~~~~~lr~~I~~ 418 (597)
.|+++||+++|+++.++|+|+||+|++||.++|+||||||||||+++|+|++ |++|+|.+||.++.+.+. .+++|||
T Consensus 14 ~l~~~~l~~~y~g~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~--~~r~ig~ 91 (355)
T 1z47_A 14 TIEFVGVEKIYPGGARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDVWIGGKRVTDLPP--QKRNVGL 91 (355)
T ss_dssp EEEEEEEEECCTTSTTCEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCG--GGSSEEE
T ss_pred eEEEEEEEEEEcCCCEEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECCcCCh--hhCcEEE
Confidence 5999999999943457999999999999999999999999999999999998 578999999999987654 4789999
Q ss_pred EeCCCCCCC-ccHHhhcccCC---CCChH----HHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHHHHHHc
Q psy1502 419 IPQDPVLFS-GTLRKNLDPFE---KYPDY----VLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIV 490 (597)
Q Consensus 419 V~Q~~~LF~-gTI~eNI~~~~---~~~~e----~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaIARAll 490 (597)
|+|++.+|. .|++|||.++. ..+.+ ++.++++.. |++........+||||||||+||||||+
T Consensus 92 v~Q~~~l~~~ltv~eni~~~l~~~~~~~~~~~~~v~~~l~~~----------gL~~~~~r~~~~LSGGq~QRvalArAL~ 161 (355)
T 1z47_A 92 VFQNYALFQHMTVYDNVSFGLREKRVPKDEMDARVRELLRFM----------RLESYANRFPHELSGGQQQRVALARALA 161 (355)
T ss_dssp ECGGGCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHT----------TCGGGTTSCGGGSCHHHHHHHHHHHHHT
T ss_pred EecCcccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHc----------CChhHhcCCcccCCHHHHHHHHHHHHHH
Confidence 999999997 59999998641 23322 233444333 4444455556799999999999999999
Q ss_pred cCCCEEEeecCCCCCCHHHHHHHHHHHHHhcC--CcEEEEeccCchhHhh-cCEEEEEeCCeEEE
Q psy1502 491 RNNVILVLDEATANVDPKTDLLIQRTIRKKFA--DCTVLTIAHRLHTIMD-SDKVLVMDSGVAVV 552 (597)
Q Consensus 491 ~~p~ILILDEaTSaLD~~te~~I~~~l~~~~~--~~TvI~IaHrlsti~~-~D~Iivl~~G~Ive 552 (597)
.+|++||||||||+||+.+...+.+.|+++.+ +.|+|+|||+++.+.. ||+|++|++|+|++
T Consensus 162 ~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~ 226 (355)
T 1z47_A 162 PRPQVLLFDEPFAAIDTQIRRELRTFVRQVHDEMGVTSVFVTHDQEEALEVADRVLVLHEGNVEQ 226 (355)
T ss_dssp TCCSEEEEESTTCCSSHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHCSEEEEEETTEEEE
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHHHHHHhCCEEEEEECCEEEE
Confidence 99999999999999999999999999988754 7899999999998864 99999999999987
No 38
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=100.00 E-value=4e-46 Score=390.53 Aligned_cols=199 Identities=20% Similarity=0.322 Sum_probs=171.9
Q ss_pred EEEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc-cCCceEEEcceeCCCCChHHHhcCcEEE
Q psy1502 341 IEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EVEGVIKIDDIDTEDVPLSKLRSNISII 419 (597)
Q Consensus 341 I~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I~idg~di~~~~~~~lr~~I~~V 419 (597)
|+++||+++|+ +.++|+|+||+|++||.++|+||||||||||+++|+|++ |++|+|.+||.++.+.+.. +++||||
T Consensus 4 l~~~~l~~~y~-~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~--~r~ig~v 80 (359)
T 2yyz_A 4 IRVVNLKKYFG-KVKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGEIYFDDVLVNDIPPK--YREVGMV 80 (359)
T ss_dssp EEEEEEEEEET-TEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGG--GTTEEEE
T ss_pred EEEEEEEEEEC-CEEEEeeeEEEEcCCCEEEEEcCCCchHHHHHHHHHCCCCCCccEEEECCEECCCCChh--hCcEEEE
Confidence 89999999995 356999999999999999999999999999999999998 5789999999999887654 6789999
Q ss_pred eCCCCCCC-ccHHhhcccCCC---CCh----HHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHHHHHHcc
Q psy1502 420 PQDPVLFS-GTLRKNLDPFEK---YPD----YVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVR 491 (597)
Q Consensus 420 ~Q~~~LF~-gTI~eNI~~~~~---~~~----e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaIARAll~ 491 (597)
+|++.+|. .|++||+.++.. .+. +++.++++..+ ++........+||||||||+||||||++
T Consensus 81 ~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~----------L~~~~~r~~~~LSgGq~QRvalArAL~~ 150 (359)
T 2yyz_A 81 FQNYALYPHMTVFENIAFPLRARRISKDEVEKRVVEIARKLL----------IDNLLDRKPTQLSGGQQQRVALARALVK 150 (359)
T ss_dssp CSSCCCCTTSCHHHHHHGGGSSSCSHHHHTTHHHHHHHHHTT----------CGGGTTSCGGGSCHHHHHHHHHHHHHTT
T ss_pred ecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcC----------CchHhcCChhhCCHHHHHHHHHHHHHHc
Confidence 99999997 499999987522 222 23444444443 4444455567999999999999999999
Q ss_pred CCCEEEeecCCCCCCHHHHHHHHHHHHHhcC--CcEEEEeccCchhHh-hcCEEEEEeCCeEEE
Q psy1502 492 NNVILVLDEATANVDPKTDLLIQRTIRKKFA--DCTVLTIAHRLHTIM-DSDKVLVMDSGVAVV 552 (597)
Q Consensus 492 ~p~ILILDEaTSaLD~~te~~I~~~l~~~~~--~~TvI~IaHrlsti~-~~D~Iivl~~G~Ive 552 (597)
+|++||||||||+||+.+...+.+.|+++.+ +.|+|+|||+++.+. .||+|++|++|+|++
T Consensus 151 ~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~~~~~adri~vl~~G~i~~ 214 (359)
T 2yyz_A 151 QPKVLLFDEPLSNLDANLRMIMRAEIKHLQQELGITSVYVTHDQAEAMTMASRIAVFNQGKLVQ 214 (359)
T ss_dssp CCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEEESCHHHHHHHCSEEEEEETTEEEE
T ss_pred CCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEE
Confidence 9999999999999999999999999988754 789999999999885 599999999999987
No 39
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=100.00 E-value=8.7e-46 Score=389.71 Aligned_cols=200 Identities=27% Similarity=0.367 Sum_probs=167.6
Q ss_pred cEEEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc-cCCceEEEcceeCCCCChHHHhcCcEE
Q psy1502 340 KIEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EVEGVIKIDDIDTEDVPLSKLRSNISI 418 (597)
Q Consensus 340 ~I~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I~idg~di~~~~~~~lr~~I~~ 418 (597)
.|+++||+++|++ .++|+|+||+|++||+++|+||||||||||+++|+|++ |++|+|.+||.++.+.+.. +++|||
T Consensus 11 ~l~~~~l~~~y~~-~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~--~r~ig~ 87 (372)
T 1v43_A 11 EVKLENLTKRFGN-FTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPK--DRNISM 87 (372)
T ss_dssp CEEEEEEEEEETT-EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGG--GGTEEE
T ss_pred eEEEEEEEEEECC-EEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCceEEEECCEECCCCChh--hCcEEE
Confidence 4999999999953 56999999999999999999999999999999999998 5789999999999887654 678999
Q ss_pred EeCCCCCCC-ccHHhhcccCC---CCChHH----HHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHHHHHHc
Q psy1502 419 IPQDPVLFS-GTLRKNLDPFE---KYPDYV----LWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIV 490 (597)
Q Consensus 419 V~Q~~~LF~-gTI~eNI~~~~---~~~~e~----i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaIARAll 490 (597)
|+|++.+|. .|++|||.++. ..+.++ +.++++.. |++........+||||||||+||||||+
T Consensus 88 v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~----------~L~~~~~r~~~~LSGGq~QRvalArAL~ 157 (372)
T 1v43_A 88 VFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELL----------QIEELLNRYPAQLSGGQRQRVAVARAIV 157 (372)
T ss_dssp EEC------CCCHHHHHHTTCC--CCCHHHHHHHHHHHHHHT----------TCGGGTTSCTTTCCSSCHHHHHHHHHHT
T ss_pred EecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHc----------CChhHhcCChhhCCHHHHHHHHHHHHHh
Confidence 999999996 59999998853 233332 33333333 4544555667899999999999999999
Q ss_pred cCCCEEEeecCCCCCCHHHHHHHHHHHHHhcC--CcEEEEeccCchhHh-hcCEEEEEeCCeEEE
Q psy1502 491 RNNVILVLDEATANVDPKTDLLIQRTIRKKFA--DCTVLTIAHRLHTIM-DSDKVLVMDSGVAVV 552 (597)
Q Consensus 491 ~~p~ILILDEaTSaLD~~te~~I~~~l~~~~~--~~TvI~IaHrlsti~-~~D~Iivl~~G~Ive 552 (597)
.+|++||||||||+||+.+...+.+.|+++.+ +.|+|+|||+++.+. .||+|++|++|+|++
T Consensus 158 ~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~ 222 (372)
T 1v43_A 158 VEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQVEAMTMGDRIAVMNRGQLLQ 222 (372)
T ss_dssp TCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEE
T ss_pred cCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE
Confidence 99999999999999999999999999988754 789999999999885 599999999999987
No 40
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=100.00 E-value=4.3e-46 Score=388.99 Aligned_cols=198 Identities=26% Similarity=0.358 Sum_probs=170.7
Q ss_pred EEEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc-cCCceEEEcceeCCCCChHHHhcCcEEE
Q psy1502 341 IEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EVEGVIKIDDIDTEDVPLSKLRSNISII 419 (597)
Q Consensus 341 I~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I~idg~di~~~~~~~lr~~I~~V 419 (597)
|+++||+++|++ . +|+|+||+|++||.++|+||||||||||+++|+|++ |++|+|.+||.++.+.+. .+++||||
T Consensus 2 l~~~~l~~~y~~-~-~l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~--~~r~ig~v 77 (348)
T 3d31_A 2 IEIESLSRKWKN-F-SLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSP--EKHDIAFV 77 (348)
T ss_dssp EEEEEEEEECSS-C-EEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCSEEEEEETTEECTTSCH--HHHTCEEE
T ss_pred EEEEEEEEEECC-E-EEeeeEEEEcCCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCEECCCCch--hhCcEEEE
Confidence 789999999964 4 999999999999999999999999999999999998 578999999999987554 47899999
Q ss_pred eCCCCCCCc-cHHhhcccCC---CC-ChHHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHHHHHHccCCC
Q psy1502 420 PQDPVLFSG-TLRKNLDPFE---KY-PDYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNV 494 (597)
Q Consensus 420 ~Q~~~LF~g-TI~eNI~~~~---~~-~~e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaIARAll~~p~ 494 (597)
||++.+|.. |++||+.++. .. .++++.++++..++ +........+||||||||+||||||+++|+
T Consensus 78 ~Q~~~l~~~ltv~enl~~~~~~~~~~~~~~v~~~l~~~~L----------~~~~~~~~~~LSgGq~QRvalAraL~~~P~ 147 (348)
T 3d31_A 78 YQNYSLFPHMNVKKNLEFGMRMKKIKDPKRVLDTARDLKI----------EHLLDRNPLTLSGGEQQRVALARALVTNPK 147 (348)
T ss_dssp CTTCCCCTTSCHHHHHHHHHHHHCCCCHHHHHHHHHHTTC----------TTTTTSCGGGSCHHHHHHHHHHHHTTSCCS
T ss_pred ecCcccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHcCC----------chHhcCChhhCCHHHHHHHHHHHHHHcCCC
Confidence 999999975 9999998641 11 22445555554443 333445567999999999999999999999
Q ss_pred EEEeecCCCCCCHHHHHHHHHHHHHhcC--CcEEEEeccCchhHh-hcCEEEEEeCCeEEE
Q psy1502 495 ILVLDEATANVDPKTDLLIQRTIRKKFA--DCTVLTIAHRLHTIM-DSDKVLVMDSGVAVV 552 (597)
Q Consensus 495 ILILDEaTSaLD~~te~~I~~~l~~~~~--~~TvI~IaHrlsti~-~~D~Iivl~~G~Ive 552 (597)
+||||||||+||+.+...+.+.|+++.+ +.|+|+|||+++.+. .||+|++|++|+|++
T Consensus 148 lLLLDEP~s~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~~~~~~adri~vl~~G~i~~ 208 (348)
T 3d31_A 148 ILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHITHDQTEARIMADRIAVVMDGKLIQ 208 (348)
T ss_dssp EEEEESSSTTSCHHHHHHHHHHHHHHHHHTTCEEEEEESCHHHHHHHCSEEEEESSSCEEE
T ss_pred EEEEECccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE
Confidence 9999999999999999999999988753 789999999999875 599999999999987
No 41
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=100.00 E-value=2.7e-46 Score=391.88 Aligned_cols=201 Identities=24% Similarity=0.309 Sum_probs=171.0
Q ss_pred EEEEeeEEEeCCCCc--cceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc-cCCceEEEcceeCCCCC---hHHHhc
Q psy1502 341 IEFQNTNVRYLSGPR--VIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EVEGVIKIDDIDTEDVP---LSKLRS 414 (597)
Q Consensus 341 I~f~nVsf~Y~~~~~--vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I~idg~di~~~~---~~~lr~ 414 (597)
|+++||+++|++ .+ +|+|+||+|++||+++|+||||||||||+++|+|++ |++|+|.+||.++.+.+ ....++
T Consensus 4 l~i~~l~~~y~~-~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~~~~~~r 82 (353)
T 1oxx_K 4 IIVKNVSKVFKK-GKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPEDR 82 (353)
T ss_dssp EEEEEEEEEEGG-GTEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCSEEEEEETTEEEEETTEESSCGGGS
T ss_pred EEEEeEEEEECC-EeeeeEeceEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECcccccccCChhhC
Confidence 899999999954 56 999999999999999999999999999999999998 57899999999987621 233578
Q ss_pred CcEEEeCCCCCCCc-cHHhhcccCC---CCChH----HHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHHH
Q psy1502 415 NISIIPQDPVLFSG-TLRKNLDPFE---KYPDY----VLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLA 486 (597)
Q Consensus 415 ~I~~V~Q~~~LF~g-TI~eNI~~~~---~~~~e----~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaIA 486 (597)
+||||||++.+|.. |++||+.++. ..+.+ ++.++++.. |++........+||||||||+|||
T Consensus 83 ~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~----------~L~~~~~~~~~~LSGGq~QRvalA 152 (353)
T 1oxx_K 83 KIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKIL----------DIHHVLNHFPRELSGAQQQRVALA 152 (353)
T ss_dssp CEEEEETTSCCCTTSCHHHHHHGGGTTSSCCHHHHHHHHHHHHHHT----------TCGGGTTSCGGGSCHHHHHHHHHH
T ss_pred CEEEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHc----------CCchHhcCChhhCCHHHHHHHHHH
Confidence 99999999999975 9999998752 22332 233444333 444444555679999999999999
Q ss_pred HHHccCCCEEEeecCCCCCCHHHHHHHHHHHHHhcC--CcEEEEeccCchhHh-hcCEEEEEeCCeEEE
Q psy1502 487 RAIVRNNVILVLDEATANVDPKTDLLIQRTIRKKFA--DCTVLTIAHRLHTIM-DSDKVLVMDSGVAVV 552 (597)
Q Consensus 487 RAll~~p~ILILDEaTSaLD~~te~~I~~~l~~~~~--~~TvI~IaHrlsti~-~~D~Iivl~~G~Ive 552 (597)
|||+.+|++||||||||+||+.+...+.+.|+++.+ ++|+|+|||+++.+. .||+|++|++|+|++
T Consensus 153 raL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~~~~~adri~vl~~G~i~~ 221 (353)
T 1oxx_K 153 RALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPADIFAIADRVGVLVKGKLVQ 221 (353)
T ss_dssp HHHTTCCSEEEEESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEEEESCHHHHHHHCSEEEEEETTEEEE
T ss_pred HHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE
Confidence 999999999999999999999999999999988753 789999999999886 599999999999987
No 42
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=100.00 E-value=2.2e-45 Score=372.07 Aligned_cols=206 Identities=17% Similarity=0.224 Sum_probs=170.3
Q ss_pred cEEEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhcc--c-cCCceEEEcceeCCCCChHHH-hcC
Q psy1502 340 KIEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRL--A-EVEGVIKIDDIDTEDVPLSKL-RSN 415 (597)
Q Consensus 340 ~I~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l--~-~~~G~I~idg~di~~~~~~~l-r~~ 415 (597)
.|+++||+|+|+ ++++|+|+||+|++|+++||+||||||||||+++|+|+ + |++|+|.+||.++.+.+...+ +..
T Consensus 20 ~l~~~~l~~~y~-~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~~ 98 (267)
T 2zu0_C 20 MLSIKDLHVSVE-DKAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLALSPEDRAGEG 98 (267)
T ss_dssp CEEEEEEEEEET-TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTCTTCEEEEEEEEETTEEGGGSCHHHHHHHT
T ss_pred eEEEEeEEEEEC-CEEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCcCCHHHHhhCC
Confidence 499999999995 45799999999999999999999999999999999998 4 568999999999988876665 456
Q ss_pred cEEEeCCCCCCCc-cHHhhcccCC----------CCChHHHHHHHHHhcHHHHHHhcCCCchhhhCCC-C-CCChhHHHH
Q psy1502 416 ISIIPQDPVLFSG-TLRKNLDPFE----------KYPDYVLWTALQEVELKDMIMEGAGLNMTVYEGG-T-NFSVGQRQL 482 (597)
Q Consensus 416 I~~V~Q~~~LF~g-TI~eNI~~~~----------~~~~e~i~~a~~~a~l~~fI~~l~GldT~vge~G-~-~LSGGQrQR 482 (597)
|+||||++.+|.+ |++||+.+.. ..+.++..+ .+.+.++. .|+++...++. . +||||||||
T Consensus 99 i~~v~Q~~~l~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~l~~-~gl~~~~~~~~~~~~LSgGq~QR 172 (267)
T 2zu0_C 99 IFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQETLDRFDFQD-----LMEEKIAL-LKMPEDLLTRSVNVGFSGGEKKR 172 (267)
T ss_dssp EEEECSSCCCCTTCBHHHHHHHHHHHHHHGGGCCCCCHHHHHH-----HHHHHHHH-TTCCTTTTTSBTTTTCCHHHHHH
T ss_pred EEEEccCccccccccHHHHHHHHHHhhhhhhccccCCHHHHHH-----HHHHHHHH-cCCChhHhcCCcccCCCHHHHHH
Confidence 9999999999976 9999985421 122222211 12223332 35654333333 2 599999999
Q ss_pred HHHHHHHccCCCEEEeecCCCCCCHHHHHHHHHHHHHhcC-CcEEEEeccCchhHhh--cCEEEEEeCCeEEE
Q psy1502 483 ICLARAIVRNNVILVLDEATANVDPKTDLLIQRTIRKKFA-DCTVLTIAHRLHTIMD--SDKVLVMDSGVAVV 552 (597)
Q Consensus 483 IaIARAll~~p~ILILDEaTSaLD~~te~~I~~~l~~~~~-~~TvI~IaHrlsti~~--~D~Iivl~~G~Ive 552 (597)
++|||||+++|+|||||||||+||+.+...+.+.|+++.+ ++|+|+|||+++.+.. ||+|++|++|++++
T Consensus 173 v~iAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd~~~~~~~~~d~v~~l~~G~i~~ 245 (267)
T 2zu0_C 173 NDILQMAVLEPELCILDESDSGLDIDALKVVADGVNSLRDGKRSFIIVTHYQRILDYIKPDYVHVLYQGRIVK 245 (267)
T ss_dssp HHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHTTCCSSCEEEEECSSGGGGGTSCCSEEEEEETTEEEE
T ss_pred HHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeeCHHHHHhhcCCEEEEEECCEEEE
Confidence 9999999999999999999999999999999999998754 7899999999999875 89999999999987
No 43
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=100.00 E-value=1.9e-45 Score=385.70 Aligned_cols=200 Identities=23% Similarity=0.360 Sum_probs=171.7
Q ss_pred cEEEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc-cCCceEEEcceeCCCCChHHHhcCcEE
Q psy1502 340 KIEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EVEGVIKIDDIDTEDVPLSKLRSNISI 418 (597)
Q Consensus 340 ~I~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I~idg~di~~~~~~~lr~~I~~ 418 (597)
.|+++||+++|+ +.++|+|+||+|++||+++|+||||||||||+++|+|++ |++|+|.+||.++.+.+.. +++|||
T Consensus 3 ~l~~~~l~~~y~-~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~--~r~ig~ 79 (362)
T 2it1_A 3 EIKLENIVKKFG-NFTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKIYFDEKDVTELPPK--DRNVGL 79 (362)
T ss_dssp CEEEEEEEEESS-SSEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGG--GTTEEE
T ss_pred EEEEEeEEEEEC-CEEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHh--HCcEEE
Confidence 389999999995 457999999999999999999999999999999999998 5789999999999887754 578999
Q ss_pred EeCCCCCCC-ccHHhhcccC---CCCChHH----HHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHHHHHHc
Q psy1502 419 IPQDPVLFS-GTLRKNLDPF---EKYPDYV----LWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIV 490 (597)
Q Consensus 419 V~Q~~~LF~-gTI~eNI~~~---~~~~~e~----i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaIARAll 490 (597)
|+|++.+|. .|++||+.++ ...+.++ +.++++.. |++........+||||||||+||||||+
T Consensus 80 v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~----------~L~~~~~r~~~~LSGGq~QRvalArAL~ 149 (362)
T 2it1_A 80 VFQNWALYPHMTVYKNIAFPLELRKAPREEIDKKVREVAKML----------HIDKLLNRYPWQLSGGQQQRVAIARALV 149 (362)
T ss_dssp ECTTCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHT----------TCTTCTTCCGGGSCHHHHHHHHHHHHHT
T ss_pred EecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHc----------CCchHhhCChhhCCHHHHHHHHHHHHHH
Confidence 999999997 4999999874 1233332 33333333 3444445556799999999999999999
Q ss_pred cCCCEEEeecCCCCCCHHHHHHHHHHHHHhcC--CcEEEEeccCchhHh-hcCEEEEEeCCeEEE
Q psy1502 491 RNNVILVLDEATANVDPKTDLLIQRTIRKKFA--DCTVLTIAHRLHTIM-DSDKVLVMDSGVAVV 552 (597)
Q Consensus 491 ~~p~ILILDEaTSaLD~~te~~I~~~l~~~~~--~~TvI~IaHrlsti~-~~D~Iivl~~G~Ive 552 (597)
.+|++||||||||+||+.+...+.+.|+++.+ +.|+|+|||+++.+. .||+|++|++|+|++
T Consensus 150 ~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~ 214 (362)
T 2it1_A 150 KEPEVLLLDEPLSNLDALLRLEVRAELKRLQKELGITTVYVTHDQAEALAMADRIAVIREGEILQ 214 (362)
T ss_dssp TCCSEEEEESGGGGSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEE
T ss_pred cCCCEEEEECccccCCHHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEE
Confidence 99999999999999999999999999988754 789999999999875 599999999999987
No 44
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=100.00 E-value=8.3e-46 Score=373.61 Aligned_cols=195 Identities=22% Similarity=0.283 Sum_probs=170.3
Q ss_pred EEEEeeEEEeCCC---CccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccccCCceEEEcceeCCCCChHHHhcCcE
Q psy1502 341 IEFQNTNVRYLSG---PRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAEVEGVIKIDDIDTEDVPLSKLRSNIS 417 (597)
Q Consensus 341 I~f~nVsf~Y~~~---~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~~~~G~I~idg~di~~~~~~~lr~~I~ 417 (597)
|+++||+++|++. +++|+|+||+|+ |+++||+||||||||||+++|+|++|++|+|.++|.++.+. .. |++|+
T Consensus 2 l~~~~l~~~y~~~~~~~~il~~vsl~i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~p~~G~I~~~g~~~~~~--~~-~~~i~ 77 (263)
T 2pjz_A 2 IQLKNVGITLSGKGYERFSLENINLEVN-GEKVIILGPNGSGKTTLLRAISGLLPYSGNIFINGMEVRKI--RN-YIRYS 77 (263)
T ss_dssp EEEEEEEEEEEEETTEEEEEEEEEEEEC-SSEEEEECCTTSSHHHHHHHHTTSSCCEEEEEETTEEGGGC--SC-CTTEE
T ss_pred EEEEEEEEEeCCCCccceeEEeeeEEEC-CEEEEEECCCCCCHHHHHHHHhCCCCCCcEEEECCEECcch--HH-hhheE
Confidence 7899999999642 579999999999 99999999999999999999999777789999999998765 23 78899
Q ss_pred -EEeCCCCCCCccHHhhcccCC---CCChHHHHHHHHHhcHHHHHHhcCCCc-hhhhCCCCCCChhHHHHHHHHHHHccC
Q psy1502 418 -IIPQDPVLFSGTLRKNLDPFE---KYPDYVLWTALQEVELKDMIMEGAGLN-MTVYEGGTNFSVGQRQLICLARAIVRN 492 (597)
Q Consensus 418 -~V~Q~~~LF~gTI~eNI~~~~---~~~~e~i~~a~~~a~l~~fI~~l~Gld-T~vge~G~~LSGGQrQRIaIARAll~~ 492 (597)
||||++.+ +.|++||+.++. +..++++.++++.. |++ ........+||||||||++|||||+++
T Consensus 78 ~~v~Q~~~l-~~tv~enl~~~~~~~~~~~~~~~~~l~~~----------gl~~~~~~~~~~~LSgGqkqRv~lAraL~~~ 146 (263)
T 2pjz_A 78 TNLPEAYEI-GVTVNDIVYLYEELKGLDRDLFLEMLKAL----------KLGEEILRRKLYKLSAGQSVLVRTSLALASQ 146 (263)
T ss_dssp ECCGGGSCT-TSBHHHHHHHHHHHTCCCHHHHHHHHHHT----------TCCGGGGGSBGGGSCHHHHHHHHHHHHHHTC
T ss_pred EEeCCCCcc-CCcHHHHHHHhhhhcchHHHHHHHHHHHc----------CCChhHhcCChhhCCHHHHHHHHHHHHHHhC
Confidence 99999999 999999997632 33344454444433 565 667777889999999999999999999
Q ss_pred CCEEEeecCCCCCCHHHHHHHHHHHHHhcCCcEEEEeccCchhHh-hcC-EEEEEeCCeEEE
Q psy1502 493 NVILVLDEATANVDPKTDLLIQRTIRKKFADCTVLTIAHRLHTIM-DSD-KVLVMDSGVAVV 552 (597)
Q Consensus 493 p~ILILDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrlsti~-~~D-~Iivl~~G~Ive 552 (597)
|++||||||||+||+++...+.+.|.++.+ |+|+|||+++.+. .|| ++++|++|++++
T Consensus 147 p~lllLDEPts~LD~~~~~~l~~~L~~~~~--tviivtHd~~~~~~~~d~~i~~l~~G~i~~ 206 (263)
T 2pjz_A 147 PEIVGLDEPFENVDAARRHVISRYIKEYGK--EGILVTHELDMLNLYKEYKAYFLVGNRLQG 206 (263)
T ss_dssp CSEEEEECTTTTCCHHHHHHHHHHHHHSCS--EEEEEESCGGGGGGCTTSEEEEEETTEEEE
T ss_pred CCEEEEECCccccCHHHHHHHHHHHHHhcC--cEEEEEcCHHHHHHhcCceEEEEECCEEEE
Confidence 999999999999999999999999998754 9999999999985 599 999999999987
No 45
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=100.00 E-value=3.9e-46 Score=364.67 Aligned_cols=193 Identities=20% Similarity=0.287 Sum_probs=163.2
Q ss_pred cEEEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc-cCCceEEEcceeCCCCChHHHhcCcEE
Q psy1502 340 KIEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EVEGVIKIDDIDTEDVPLSKLRSNISI 418 (597)
Q Consensus 340 ~I~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I~idg~di~~~~~~~lr~~I~~ 418 (597)
.|+++||+++|++ ++|+|+||+|++||.+||+||||||||||+++|+|++ |++|+|.+||.++. .+|+.|+|
T Consensus 10 ~l~~~~ls~~y~~--~il~~vsl~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~-----~~~~~i~~ 82 (214)
T 1sgw_A 10 KLEIRDLSVGYDK--PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPIT-----KVKGKIFF 82 (214)
T ss_dssp EEEEEEEEEESSS--EEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEEGG-----GGGGGEEE
T ss_pred eEEEEEEEEEeCC--eEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEhh-----hhcCcEEE
Confidence 5999999999965 7999999999999999999999999999999999998 57899999999986 36889999
Q ss_pred EeCCCCCCCc-cHHhhcccCC-----CCChHHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHHHHHHccC
Q psy1502 419 IPQDPVLFSG-TLRKNLDPFE-----KYPDYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRN 492 (597)
Q Consensus 419 V~Q~~~LF~g-TI~eNI~~~~-----~~~~e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaIARAll~~ 492 (597)
|||++.+|.+ |++||+.++. ..+++++.++++.. |++.. +....+||||||||++|||||+++
T Consensus 83 v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~----------gl~~~-~~~~~~LSgGqkqrv~laraL~~~ 151 (214)
T 1sgw_A 83 LPEEIIVPRKISVEDYLKAVASLYGVKVNKNEIMDALESV----------EVLDL-KKKLGELSQGTIRRVQLASTLLVN 151 (214)
T ss_dssp ECSSCCCCTTSBHHHHHHHHHHHTTCCCCHHHHHHHHHHT----------TCCCT-TSBGGGSCHHHHHHHHHHHHTTSC
T ss_pred EeCCCcCCCCCCHHHHHHHHHHhcCCchHHHHHHHHHHHc----------CCCcC-CCChhhCCHHHHHHHHHHHHHHhC
Confidence 9999999986 9999997631 12233444443332 56655 677889999999999999999999
Q ss_pred CCEEEeecCCCCCCHHHHHHHHHHHHHhc-CCcEEEEeccCchhHhhcCEEEEEeCCeE
Q psy1502 493 NVILVLDEATANVDPKTDLLIQRTIRKKF-ADCTVLTIAHRLHTIMDSDKVLVMDSGVA 550 (597)
Q Consensus 493 p~ILILDEaTSaLD~~te~~I~~~l~~~~-~~~TvI~IaHrlsti~~~D~Iivl~~G~I 550 (597)
|++||||||||+||+.+...+.+.|.++. +++|+|++||+++.+..++..+++.+|+|
T Consensus 152 p~lllLDEPts~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~~~~~~~d~v~~~~~~~ 210 (214)
T 1sgw_A 152 AEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIISSREELSYCDVNENLHKYSTKI 210 (214)
T ss_dssp CSEEEEESTTTTSCTTTHHHHHHHHHHHHHHHSEEEEEESSCCTTSSEEEEGGGGBC--
T ss_pred CCEEEEECCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEeCCcc
Confidence 99999999999999999999999998875 36899999999999987544445666766
No 46
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=100.00 E-value=1.5e-45 Score=370.28 Aligned_cols=189 Identities=22% Similarity=0.297 Sum_probs=161.2
Q ss_pred cEEEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc-cCCceEEEcceeCCCCChHHHhcCcEE
Q psy1502 340 KIEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EVEGVIKIDDIDTEDVPLSKLRSNISI 418 (597)
Q Consensus 340 ~I~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I~idg~di~~~~~~~lr~~I~~ 418 (597)
.|+++||+++|+.++++|+|+||+|++|+.+||+||||||||||+++|+|++ |++|+|. ++++|+|
T Consensus 4 ~l~i~~l~~~y~~~~~vl~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~-------------~~~~i~~ 70 (253)
T 2nq2_C 4 ALSVENLGFYYQAENFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKIE-------------VYQSIGF 70 (253)
T ss_dssp EEEEEEEEEEETTTTEEEEEEEEEEETTCEEEEECCSSSSHHHHHHHHTTSSCCSEEEEE-------------ECSCEEE
T ss_pred eEEEeeEEEEeCCCCeEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEE-------------EeccEEE
Confidence 3899999999962467999999999999999999999999999999999998 5789998 3678999
Q ss_pred EeCCCCCC-CccHHhhcccCCC--------CCh---HHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHHH
Q psy1502 419 IPQDPVLF-SGTLRKNLDPFEK--------YPD---YVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLA 486 (597)
Q Consensus 419 V~Q~~~LF-~gTI~eNI~~~~~--------~~~---e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaIA 486 (597)
|||++.+| +.|++||+.++.. ... +++.++++.. |++........+||||||||++||
T Consensus 71 v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~----------~l~~~~~~~~~~LSgGq~qrv~lA 140 (253)
T 2nq2_C 71 VPQFFSSPFAYSVLDIVLMGRSTHINTFAKPKSHDYQVAMQALDYL----------NLTHLAKREFTSLSGGQRQLILIA 140 (253)
T ss_dssp ECSCCCCSSCCBHHHHHHGGGGGGSCTTCCCCHHHHHHHHHHHHHT----------TCGGGTTSBGGGSCHHHHHHHHHH
T ss_pred EcCCCccCCCCCHHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHc----------CChHHhcCChhhCCHHHHHHHHHH
Confidence 99999988 5799999976421 111 2233333333 444445556779999999999999
Q ss_pred HHHccCCCEEEeecCCCCCCHHHHHHHHHHHHHhcC--CcEEEEeccCchhHh-hcCEEEEEeCCeEEE
Q psy1502 487 RAIVRNNVILVLDEATANVDPKTDLLIQRTIRKKFA--DCTVLTIAHRLHTIM-DSDKVLVMDSGVAVV 552 (597)
Q Consensus 487 RAll~~p~ILILDEaTSaLD~~te~~I~~~l~~~~~--~~TvI~IaHrlsti~-~~D~Iivl~~G~Ive 552 (597)
|||+++|++||||||||+||+.+...+.+.|.++.+ ++|+|+|||+++.+. .||++++|++|+ ++
T Consensus 141 raL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~-~~ 208 (253)
T 2nq2_C 141 RAIASECKLILLDEPTSALDLANQDIVLSLLIDLAQSQNMTVVFTTHQPNQVVAIANKTLLLNKQN-FK 208 (253)
T ss_dssp HHHHTTCSEEEESSSSTTSCHHHHHHHHHHHHHHHHTSCCEEEEEESCHHHHHHHCSEEEEEETTE-EE
T ss_pred HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEeCCe-Ee
Confidence 999999999999999999999999999999988754 789999999999985 699999999999 76
No 47
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=100.00 E-value=8.3e-45 Score=382.94 Aligned_cols=200 Identities=24% Similarity=0.341 Sum_probs=171.0
Q ss_pred cEEEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc-cCCceEEEcceeCCC------CChHHH
Q psy1502 340 KIEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EVEGVIKIDDIDTED------VPLSKL 412 (597)
Q Consensus 340 ~I~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I~idg~di~~------~~~~~l 412 (597)
.|+++||+++|+ +.++|+|+||+|++||.++|+||||||||||+++|+|++ |++|+|.+||.++.+ .+. .
T Consensus 3 ~l~~~~l~~~y~-~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~~~~~~--~ 79 (372)
T 1g29_1 3 GVRLVDVWKVFG-EVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPP--K 79 (372)
T ss_dssp EEEEEEEEEEET-TEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEEEEEGGGTEECCG--G
T ss_pred EEEEEeEEEEEC-CEEEEeeeEEEEcCCCEEEEECCCCcHHHHHHHHHHcCCCCCccEEEECCEECccccccccCCH--h
Confidence 389999999995 357999999999999999999999999999999999998 578999999999876 544 3
Q ss_pred hcCcEEEeCCCCCCC-ccHHhhcccCC---CCChHH----HHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHH
Q psy1502 413 RSNISIIPQDPVLFS-GTLRKNLDPFE---KYPDYV----LWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLIC 484 (597)
Q Consensus 413 r~~I~~V~Q~~~LF~-gTI~eNI~~~~---~~~~e~----i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIa 484 (597)
+++||||+|++.+|. .|++||+.++. ..+.++ +.++++.. |++........+||||||||+|
T Consensus 80 ~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~----------~L~~~~~r~~~~LSGGq~QRva 149 (372)
T 1g29_1 80 DRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELL----------GLTELLNRKPRELSGGQRQRVA 149 (372)
T ss_dssp GSSEEEECSCCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH----------TCGGGTTCCGGGSCHHHHHHHH
T ss_pred HCCEEEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHC----------CCchHhcCCcccCCHHHHHHHH
Confidence 678999999999996 69999998741 233332 33333333 3444445556799999999999
Q ss_pred HHHHHccCCCEEEeecCCCCCCHHHHHHHHHHHHHhcC--CcEEEEeccCchhHh-hcCEEEEEeCCeEEE
Q psy1502 485 LARAIVRNNVILVLDEATANVDPKTDLLIQRTIRKKFA--DCTVLTIAHRLHTIM-DSDKVLVMDSGVAVV 552 (597)
Q Consensus 485 IARAll~~p~ILILDEaTSaLD~~te~~I~~~l~~~~~--~~TvI~IaHrlsti~-~~D~Iivl~~G~Ive 552 (597)
|||||+.+|++||||||||+||+.+...+.+.|+++.+ +.|+|+|||+++.+. .||+|++|++|+|++
T Consensus 150 lArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~ 220 (372)
T 1g29_1 150 LGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQVEAMTMGDRIAVMNRGVLQQ 220 (372)
T ss_dssp HHHHHHTCCSEEEEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEE
T ss_pred HHHHHhcCCCEEEECCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHHHHHHhCCEEEEEeCCEEEE
Confidence 99999999999999999999999999999999988754 789999999999886 599999999999987
No 48
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=100.00 E-value=2.1e-41 Score=346.82 Aligned_cols=211 Identities=16% Similarity=0.157 Sum_probs=173.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCCCCCCC-CcccEEEEeeEEEeCCCCccceeeeEEEcCCc
Q psy1502 290 GVVQWAMRQAAEVENHMISVKRLVEYTKLEPEGNLSPNYEDENEIWP-VLGKIEFQNTNVRYLSGPRVIKNLNITIHPKE 368 (597)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~s~~ri~~~~~~~~~~~~~~~~~~~~~~~~-~~~~I~f~nVsf~Y~~~~~vL~~isl~I~~G~ 368 (597)
.++..+...+..++++..+.+|+.++++.+++..... ..++ ..+.|+++||+|+|+ .++|+|+||+|++|+
T Consensus 56 ~~v~~~~~~~~~~~~a~~a~~ri~~~l~~~~~~~~~~------~~~~~~~~~i~~~~vs~~y~--~~vL~~vsl~i~~Ge 127 (305)
T 2v9p_A 56 KHVKDCATMVRHYLRAETQALSMPAYIKARCKLATGE------GSWKSILTFFNYQNIELITF--INALKLWLKGIPKKN 127 (305)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHCCSS------CCTHHHHHHHHHTTCCHHHH--HHHHHHHHHTCTTCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCC------CcccccCCeEEEEEEEEEcC--hhhhccceEEecCCC
Confidence 5567777788888899999999999987654321110 0111 124599999999997 579999999999999
Q ss_pred EEEEEcCCCCCHHHHHHHHhccccCCceEEEcceeCCCCChHHHhcCcEEEeCCCCCCCccHHh-hcccCCCCChHHHHH
Q psy1502 369 KIGIVGRTGAGKSSLIAAIFRLAEVEGVIKIDDIDTEDVPLSKLRSNISIIPQDPVLFSGTLRK-NLDPFEKYPDYVLWT 447 (597)
Q Consensus 369 ~vaIVG~SGsGKSTL~~LL~~l~~~~G~I~idg~di~~~~~~~lr~~I~~V~Q~~~LF~gTI~e-NI~~~~~~~~e~i~~ 447 (597)
++|||||||||||||+++|+|++ +|+| ++||+|++.+|++|+++ ||.++.++++
T Consensus 128 ~vaIvGpsGsGKSTLl~lL~gl~--~G~I------------------~~~v~q~~~lf~~ti~~~ni~~~~~~~~----- 182 (305)
T 2v9p_A 128 CLAFIGPPNTGKSMLCNSLIHFL--GGSV------------------LSFANHKSHFWLASLADTRAALVDDATH----- 182 (305)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHH--TCEE------------------ECGGGTTSGGGGGGGTTCSCEEEEEECH-----
T ss_pred EEEEECCCCCcHHHHHHHHhhhc--CceE------------------EEEecCccccccccHHHHhhccCccccH-----
Confidence 99999999999999999999999 8999 45789999999999998 9988655543
Q ss_pred HHHHhcHHHHHHh-c-CCCchhhhCCCCCCChhHHHHHHHHHHHccCCCEEEeecCCCCCCHHHHHHHHHHHHHhcCCcE
Q psy1502 448 ALQEVELKDMIME-G-AGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATANVDPKTDLLIQRTIRKKFADCT 525 (597)
Q Consensus 448 a~~~a~l~~fI~~-l-~GldT~vge~G~~LSGGQrQRIaIARAll~~p~ILILDEaTSaLD~~te~~I~~~l~~~~~~~T 525 (597)
+++++++. + +|+| |.+|||||||| |||++++|+||| ||+||++++..|+.
T Consensus 183 -----~~~~~i~~~L~~gld------g~~LSgGqkQR---ARAll~~p~iLl----Ts~LD~~~~~~i~~---------- 234 (305)
T 2v9p_A 183 -----ACWRYFDTYLRNALD------GYPVSIDRKHK---AAVQIKAPPLLV----TSNIDVQAEDRYLY---------- 234 (305)
T ss_dssp -----HHHHHHHHTTTGGGG------TCCEECCCSSC---CCCEECCCCEEE----EESSCSTTCGGGGG----------
T ss_pred -----HHHHHHHHHhHccCC------ccCcCHHHHHH---HHHHhCCCCEEE----ECCCCHHHHHHHHH----------
Confidence 34677877 6 7887 78999999999 999999999999 99999999998862
Q ss_pred EEEeccCchhHhhcCEEEEEeCCeEEE-----ecCchhHhhHhhh
Q psy1502 526 VLTIAHRLHTIMDSDKVLVMDSGVAVV-----SSFGFFFSKDLIE 565 (597)
Q Consensus 526 vI~IaHrlsti~~~D~Iivl~~G~Ive-----~~~g~y~~l~~~~ 565 (597)
+|||+++++.||+| +|++|+|++ +-++.|++++...
T Consensus 235 ---ltH~~~~~~~aD~i-vl~~G~iv~~g~~~el~~~y~~l~~~~ 275 (305)
T 2v9p_A 235 ---LHSRVQTFRFEQPC-TDESGEQPFNITDADWKSFFVRLWGRL 275 (305)
T ss_dssp ---GTTTEEEEECCCCC-CCC---CCCCCCHHHHHHHHHHSTTTT
T ss_pred ---HhCCHHHHHhCCEE-EEeCCEEEEeCCHHHHHHHHHHHHHHc
Confidence 39999999999999 999999998 2256788888644
No 49
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=100.00 E-value=9.5e-36 Score=343.70 Aligned_cols=199 Identities=21% Similarity=0.284 Sum_probs=151.3
Q ss_pred cEEEEeeEEEeCC-CCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc-cCCceEEEcceeCCCCChHHHhcCcE
Q psy1502 340 KIEFQNTNVRYLS-GPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EVEGVIKIDDIDTEDVPLSKLRSNIS 417 (597)
Q Consensus 340 ~I~f~nVsf~Y~~-~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I~idg~di~~~~~~~lr~~I~ 417 (597)
-|+++||+|+|++ .+++|+|+||+|++|+++||+||||||||||+++|+|++ |++|+|.++|. ..|+
T Consensus 671 mL~v~nLs~~Y~g~~~~iL~dVSl~I~~GeivaIiGpNGSGKSTLLklLaGll~P~sG~I~~~~~-----------~~I~ 739 (986)
T 2iw3_A 671 IVKVTNMEFQYPGTSKPQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPTSGEVYTHEN-----------CRIA 739 (986)
T ss_dssp EEEEEEEEECCTTCSSCSEEEEEEEEETTCEEEECSCCCHHHHHHHHHHTTSSCCSEEEEEECTT-----------CCEE
T ss_pred eEEEEeeEEEeCCCCceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEcCc-----------cceE
Confidence 4999999999965 367999999999999999999999999999999999987 57899999862 2477
Q ss_pred EEeCCCCC-----CCccHH-------------------------------------------------------------
Q psy1502 418 IIPQDPVL-----FSGTLR------------------------------------------------------------- 431 (597)
Q Consensus 418 ~V~Q~~~L-----F~gTI~------------------------------------------------------------- 431 (597)
||+|++.. .+.|++
T Consensus 740 yv~Q~~~~~l~~~~~~t~~e~i~~~~q~g~d~~~~~~~~~~l~~ed~~~~~~~~~~~g~~r~~~~i~~r~~~~~~~~~e~ 819 (986)
T 2iw3_A 740 YIKQHAFAHIESHLDKTPSEYIQWRFQTGEDRETMDRANRQINENDAEAMNKIFKIEGTPRRIAGIHSRRKFKNTYEYEC 819 (986)
T ss_dssp EECHHHHHHGGGCTTSCHHHHHHHHTTTSSCTTTTTTTSCCCCSSCSSGGGCCEEETTEEEEEEEEEEEEEETTEEEEEE
T ss_pred eeccchhhhhhcccccCHHHHHHHHhhccchhhhhhhhhhccchhhhhhhhcccccccchhhhhhhhhhhhhcccchhhh
Confidence 77776531 122333
Q ss_pred -----hhcccCCC----C--------ChHHHHH-------------HHH--------HhcHHHHHHhcCCCchhh--hCC
Q psy1502 432 -----KNLDPFEK----Y--------PDYVLWT-------------ALQ--------EVELKDMIMEGAGLNMTV--YEG 471 (597)
Q Consensus 432 -----eNI~~~~~----~--------~~e~i~~-------------a~~--------~a~l~~fI~~l~GldT~v--ge~ 471 (597)
||+.++.. . ..+++.+ ++. ...+.+.++. -|++... ...
T Consensus 820 ~~sv~ENi~l~~~~~~~lt~~en~~~~~~~l~~~~~~~v~~~d~~~~~~~g~~~~~~~~~i~~~Le~-lGL~~~~~~~~~ 898 (986)
T 2iw3_A 820 SFLLGENIGMKSERWVPMMSVDNAWIPRGELVESHSKMVAEVDMKEALASGQFRPLTRKEIEEHCSM-LGLDPEIVSHSR 898 (986)
T ss_dssp EEEEEESTTSTTCEEEECCGGGCEEEEGGGTHHHHHHHHHHHHHHHHHHTTCCCCCCHHHHHHHHHH-TTCCHHHHHHSC
T ss_pred hhhhhhhhhcccccccccchhhhhhhhhHHHhhhHhhhhhhhhhhhhhhhcccchhHHHHHHHHHHH-cCCCchhhcCCC
Confidence 33332110 0 0000000 000 0111222222 4666543 456
Q ss_pred CCCCChhHHHHHHHHHHHccCCCEEEeecCCCCCCHHHHHHHHHHHHHhcCCcEEEEeccCchhHh-hcCEEEEEeCCeE
Q psy1502 472 GTNFSVGQRQLICLARAIVRNNVILVLDEATANVDPKTDLLIQRTIRKKFADCTVLTIAHRLHTIM-DSDKVLVMDSGVA 550 (597)
Q Consensus 472 G~~LSGGQrQRIaIARAll~~p~ILILDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrlsti~-~~D~Iivl~~G~I 550 (597)
...||||||||++|||||+.+|+||||||||++||+++...+.+.|+++ +.|+|+|||+++.+. .||+|++|++|++
T Consensus 899 ~~~LSGGQkQRVaLArAL~~~P~LLLLDEPT~gLD~~s~~~L~~~L~~~--g~tVIiISHD~e~v~~l~DrVivL~~G~I 976 (986)
T 2iw3_A 899 IRGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEF--EGGVIIITHSAEFTKNLTEEVWAVKDGRM 976 (986)
T ss_dssp GGGCCHHHHHHHHHHHHHTTCCSEEEEECGGGTCCHHHHHHHHHHHHSC--SSEEEEECSCHHHHTTTCCEEECCBTTBC
T ss_pred ccccCHHHHHHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHh--CCEEEEEECCHHHHHHhCCEEEEEECCEE
Confidence 7799999999999999999999999999999999999999999999876 579999999999986 5999999999999
Q ss_pred EE
Q psy1502 551 VV 552 (597)
Q Consensus 551 ve 552 (597)
++
T Consensus 977 v~ 978 (986)
T 2iw3_A 977 TP 978 (986)
T ss_dssp CC
T ss_pred EE
Confidence 76
No 50
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=100.00 E-value=1.3e-35 Score=327.70 Aligned_cols=185 Identities=18% Similarity=0.288 Sum_probs=153.9
Q ss_pred cEEEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc-cCCceEEEcceeCCCCChHHHhcCcEE
Q psy1502 340 KIEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EVEGVIKIDDIDTEDVPLSKLRSNISI 418 (597)
Q Consensus 340 ~I~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I~idg~di~~~~~~~lr~~I~~ 418 (597)
.++++|++++|++ ..|+++||+|++||++||+||||||||||+++|+|+. |++|+|.++| ..++|
T Consensus 269 ~l~~~~l~~~~~~--~~l~~~~~~i~~Gei~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~------------~~i~~ 334 (538)
T 3ozx_A 269 KMKWTKIIKKLGD--FQLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEITADEGSVTPEK------------QILSY 334 (538)
T ss_dssp EEEECCEEEEETT--EEEEECCEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSBCCEESSC------------CCEEE
T ss_pred eEEEcceEEEECC--EEEEeccceECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECC------------eeeEe
Confidence 4889999999954 4688899999999999999999999999999999987 5789999765 46899
Q ss_pred EeCCCCC-CCccHHhhcccC-CC---CChHHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHHHHHHccCC
Q psy1502 419 IPQDPVL-FSGTLRKNLDPF-EK---YPDYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNN 493 (597)
Q Consensus 419 V~Q~~~L-F~gTI~eNI~~~-~~---~~~e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaIARAll~~p 493 (597)
+||++.. |..|+++|+... .. ...+.+.++++.. |+..........||||||||++|||||+++|
T Consensus 335 ~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~l~~~----------~l~~~~~~~~~~LSGGq~QRv~iAraL~~~p 404 (538)
T 3ozx_A 335 KPQRIFPNYDGTVQQYLENASKDALSTSSWFFEEVTKRL----------NLHRLLESNVNDLSGGELQKLYIAATLAKEA 404 (538)
T ss_dssp ECSSCCCCCSSBHHHHHHHHCSSTTCTTSHHHHHTTTTT----------TGGGCTTSBGGGCCHHHHHHHHHHHHHHSCC
T ss_pred echhcccccCCCHHHHHHHhhhhccchhHHHHHHHHHHc----------CCHHHhcCChhhCCHHHHHHHHHHHHHHcCC
Confidence 9999874 578999998642 11 1222233333333 3444455566789999999999999999999
Q ss_pred CEEEeecCCCCCCHHHHHHHHHHHHHhc--CCcEEEEeccCchhHhh-cCEEEEEeCC
Q psy1502 494 VILVLDEATANVDPKTDLLIQRTIRKKF--ADCTVLTIAHRLHTIMD-SDKVLVMDSG 548 (597)
Q Consensus 494 ~ILILDEaTSaLD~~te~~I~~~l~~~~--~~~TvI~IaHrlsti~~-~D~Iivl~~G 548 (597)
+||||||||++||+.+...+.+.|+++. .++|+|+|||+++.+.. ||||+||++|
T Consensus 405 ~lLlLDEPT~gLD~~~~~~i~~~l~~l~~~~g~tvi~vsHdl~~~~~~aDri~vl~~~ 462 (538)
T 3ozx_A 405 DLYVLDQPSSYLDVEERYIVAKAIKRVTRERKAVTFIIDHDLSIHDYIADRIIVFKGE 462 (538)
T ss_dssp SEEEEESTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEEEE
T ss_pred CEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeCC
Confidence 9999999999999999999999999875 47899999999999975 9999999874
No 51
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=100.00 E-value=3.9e-35 Score=324.51 Aligned_cols=188 Identities=24% Similarity=0.330 Sum_probs=154.5
Q ss_pred cEEEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc-cCCceEEEcceeCCCCChHHHhcCcEE
Q psy1502 340 KIEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EVEGVIKIDDIDTEDVPLSKLRSNISI 418 (597)
Q Consensus 340 ~I~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I~idg~di~~~~~~~lr~~I~~ 418 (597)
.++++|++++|.+ ..|+++||+|++||++||+||||||||||+++|+|+. |++|+|.+ +..|+|
T Consensus 287 ~l~~~~l~~~~~~--~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~i~~-------------~~~i~~ 351 (538)
T 1yqt_A 287 LVTYPRLVKDYGS--FRLEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKIEW-------------DLTVAY 351 (538)
T ss_dssp EEEECCEEEEETT--EEEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCSBCCCCC-------------CCCEEE
T ss_pred EEEEeeEEEEECC--EEEEeCccccCCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEE-------------CceEEE
Confidence 4899999999953 3699999999999999999999999999999999987 57899985 247999
Q ss_pred EeCCCCC-CCccHHhhcccC-C-CCC-hHHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHHHHHHccCCC
Q psy1502 419 IPQDPVL-FSGTLRKNLDPF-E-KYP-DYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNV 494 (597)
Q Consensus 419 V~Q~~~L-F~gTI~eNI~~~-~-~~~-~e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaIARAll~~p~ 494 (597)
|||++.+ ++.|+.||+... . ... .+.+. +.++. -|+..........||||||||++|||||+.+|+
T Consensus 352 v~Q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~---------~~l~~-~~l~~~~~~~~~~LSGGe~qrv~lAraL~~~p~ 421 (538)
T 1yqt_A 352 KPQYIKADYEGTVYELLSKIDASKLNSNFYKT---------ELLKP-LGIIDLYDREVNELSGGELQRVAIAATLLRDAD 421 (538)
T ss_dssp ECSSCCCCCSSBHHHHHHHHHHHHHTCHHHHH---------HTTTT-TTCGGGTTSBGGGCCHHHHHHHHHHHHHTSCCS
T ss_pred EecCCcCCCCCcHHHHHHhhhccCCCHHHHHH---------HHHHH-cCChhhhcCChhhCCHHHHHHHHHHHHHHhCCC
Confidence 9999876 567999987532 0 111 11111 11111 355555566677999999999999999999999
Q ss_pred EEEeecCCCCCCHHHHHHHHHHHHHhc--CCcEEEEeccCchhHhh-cCEEEEEeC--CeEEE
Q psy1502 495 ILVLDEATANVDPKTDLLIQRTIRKKF--ADCTVLTIAHRLHTIMD-SDKVLVMDS--GVAVV 552 (597)
Q Consensus 495 ILILDEaTSaLD~~te~~I~~~l~~~~--~~~TvI~IaHrlsti~~-~D~Iivl~~--G~Ive 552 (597)
+|||||||++||+.+...+.+.|+++. .+.|+|+|||+++.+.. ||||++|++ |+++.
T Consensus 422 lLlLDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vsHd~~~~~~~~drv~vl~~~~~~~~~ 484 (538)
T 1yqt_A 422 IYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRLMVFEGEPGKYGR 484 (538)
T ss_dssp EEEEECTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHCSEEEEEEEETTTEEE
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeCCcceEee
Confidence 999999999999999999999999875 38899999999999975 999999996 67664
No 52
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=100.00 E-value=5.3e-35 Score=326.85 Aligned_cols=188 Identities=24% Similarity=0.344 Sum_probs=154.4
Q ss_pred cEEEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc-cCCceEEEcceeCCCCChHHHhcCcEE
Q psy1502 340 KIEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EVEGVIKIDDIDTEDVPLSKLRSNISI 418 (597)
Q Consensus 340 ~I~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I~idg~di~~~~~~~lr~~I~~ 418 (597)
.++++|++++|++ ..|+++||++++||++||+||||||||||+++|+|+. |++|+|.+ +.+|+|
T Consensus 357 ~l~~~~l~~~~~~--~~l~~~~~~v~~Gei~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~-------------~~~i~~ 421 (607)
T 3bk7_A 357 LVEYPRLVKDYGS--FKLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEW-------------DLTVAY 421 (607)
T ss_dssp EEEECCEEEECSS--CEEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCSBSCCCC-------------CCCEEE
T ss_pred EEEEeceEEEecc--eEEEecccccCCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEE-------------eeEEEE
Confidence 4899999999953 3799999999999999999999999999999999987 57899976 247999
Q ss_pred EeCCCCC-CCccHHhhcccC-C-CC-ChHHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHHHHHHccCCC
Q psy1502 419 IPQDPVL-FSGTLRKNLDPF-E-KY-PDYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNV 494 (597)
Q Consensus 419 V~Q~~~L-F~gTI~eNI~~~-~-~~-~~e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaIARAll~~p~ 494 (597)
|||++.+ ++.|+.||+... . .. ..+.+.++++.. |++.........||||||||++|||||+++|+
T Consensus 422 v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~l~~~----------~l~~~~~~~~~~LSGGe~QRv~iAraL~~~p~ 491 (607)
T 3bk7_A 422 KPQYIKAEYEGTVYELLSKIDSSKLNSNFYKTELLKPL----------GIIDLYDRNVEDLSGGELQRVAIAATLLRDAD 491 (607)
T ss_dssp ECSSCCCCCSSBHHHHHHHHHHHHHHCHHHHHHTHHHH----------TCTTTTTSBGGGCCHHHHHHHHHHHHHTSCCS
T ss_pred EecCccCCCCCcHHHHHHhhhccCCCHHHHHHHHHHHc----------CCchHhcCChhhCCHHHHHHHHHHHHHHhCCC
Confidence 9999876 578999998642 1 11 112222222222 44444455567899999999999999999999
Q ss_pred EEEeecCCCCCCHHHHHHHHHHHHHhc--CCcEEEEeccCchhHhh-cCEEEEEeC--CeEEE
Q psy1502 495 ILVLDEATANVDPKTDLLIQRTIRKKF--ADCTVLTIAHRLHTIMD-SDKVLVMDS--GVAVV 552 (597)
Q Consensus 495 ILILDEaTSaLD~~te~~I~~~l~~~~--~~~TvI~IaHrlsti~~-~D~Iivl~~--G~Ive 552 (597)
+|||||||++||+.+...+.+.|+++. .++|+|+|||++..+.. ||||++|++ |+++.
T Consensus 492 lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~~~~~~adrv~vl~~~~g~~~~ 554 (607)
T 3bk7_A 492 IYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRLIVFEGEPGRHGR 554 (607)
T ss_dssp EEEEECTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEEEETTTEEE
T ss_pred EEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEcCCcceEEe
Confidence 999999999999999999999999874 48899999999999975 999999986 66654
No 53
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=100.00 E-value=2.3e-35 Score=329.76 Aligned_cols=193 Identities=20% Similarity=0.211 Sum_probs=152.6
Q ss_pred EeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc-cCCceE---------EEcceeCCCCChHH--
Q psy1502 344 QNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EVEGVI---------KIDDIDTEDVPLSK-- 411 (597)
Q Consensus 344 ~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I---------~idg~di~~~~~~~-- 411 (597)
+||+++|++...+|+|+| +|++||.+||+||||||||||+++|+|++ |++|++ .++|.++.++....
T Consensus 95 ~~ls~~yg~~~~~l~~vs-~i~~Ge~~~LiG~NGsGKSTLlkiL~Gll~p~~G~~~~~~~~~~~~~~G~~~~~~~~~~~~ 173 (607)
T 3bk7_A 95 EDCVHRYGVNAFVLYRLP-IVKDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDNVIRAFRGNELQNYFERLKN 173 (607)
T ss_dssp GSEEEECSTTCCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHTTSSCCCTTTTCCCHHHHHHHTTTSTHHHHHHHHHH
T ss_pred CCeEEEECCCCeeeCCCC-CCCCCCEEEEECCCCChHHHHHHHHhCCCCCCCCccccccchhhheeCCEehhhhhhhhhh
Confidence 899999965435899999 99999999999999999999999999987 578996 45665554321111
Q ss_pred HhcCcEEEeCCCC----CCCccHHhhcccCCCCChHHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHHHH
Q psy1502 412 LRSNISIIPQDPV----LFSGTLRKNLDPFEKYPDYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLAR 487 (597)
Q Consensus 412 lr~~I~~V~Q~~~----LF~gTI~eNI~~~~~~~~e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaIAR 487 (597)
.+..+++++|+.. ++.+|++||+.... ..+++.++++..+ ++......-..||||||||++|||
T Consensus 174 ~~~~i~~~~q~~~~~~~~~~~tv~e~l~~~~--~~~~~~~~L~~lg----------L~~~~~~~~~~LSGGekQRvaIAr 241 (607)
T 3bk7_A 174 GEIRPVVKPQYVDLLPKAVKGKVRELLKKVD--EVGKFEEVVKELE----------LENVLDRELHQLSGGELQRVAIAA 241 (607)
T ss_dssp TSCCCEEECSCGGGGGGTCCSBHHHHHHHTC--CSSCHHHHHHHTT----------CTTGGGSBGGGCCHHHHHHHHHHH
T ss_pred hhcceEEeechhhhchhhccccHHHHhhhhH--HHHHHHHHHHHcC----------CCchhCCChhhCCHHHHHHHHHHH
Confidence 2346889998743 45579999986421 1234555555444 333344445689999999999999
Q ss_pred HHccCCCEEEeecCCCCCCHHHHHHHHHHHHHhcC-CcEEEEeccCchhHhh-cCEEEEEeCCe
Q psy1502 488 AIVRNNVILVLDEATANVDPKTDLLIQRTIRKKFA-DCTVLTIAHRLHTIMD-SDKVLVMDSGV 549 (597)
Q Consensus 488 All~~p~ILILDEaTSaLD~~te~~I~~~l~~~~~-~~TvI~IaHrlsti~~-~D~Iivl~~G~ 549 (597)
||+++|++||||||||+||+.+...+.+.|+++.+ +.|+|+|+|+++.+.. ||+|++|++|.
T Consensus 242 aL~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~~g~tvIivsHdl~~~~~~adri~vl~~~~ 305 (607)
T 3bk7_A 242 ALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANEGKAVLVVEHDLAVLDYLSDVIHVVYGEP 305 (607)
T ss_dssp HHHSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEESCT
T ss_pred HHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEecChHHHHhhCCEEEEECCCc
Confidence 99999999999999999999999999999988743 7899999999999865 89999999753
No 54
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=100.00 E-value=2.8e-35 Score=325.75 Aligned_cols=196 Identities=21% Similarity=0.210 Sum_probs=150.7
Q ss_pred EEE-EeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc-cCCceE---------EEcceeCCCCCh
Q psy1502 341 IEF-QNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EVEGVI---------KIDDIDTEDVPL 409 (597)
Q Consensus 341 I~f-~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I---------~idg~di~~~~~ 409 (597)
.++ +||+++|++...+|+|+| +|++||++||+||||||||||+++|+|++ |++|++ .++|.++.....
T Consensus 21 ~~~~~~ls~~yg~~~~~l~~vs-~i~~Ge~~~LvG~NGaGKSTLlk~l~Gl~~p~~G~~~~~~~~~~~~~~g~~~~~~~~ 99 (538)
T 1yqt_A 21 EQLEEDCVHRYGVNAFVLYRLP-VVKEGMVVGIVGPNGTGKSTAVKILAGQLIPNLCGDNDSWDGVIRAFRGNELQNYFE 99 (538)
T ss_dssp ---CCCEEEECSTTCCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSCCCTTTTCCSHHHHHHHTTTSTHHHHHH
T ss_pred hhHhcCcEEEECCccccccCcC-cCCCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCccCcchhhhHHhhCCccHHHHHH
Confidence 455 699999965435899999 99999999999999999999999999987 578985 356655432211
Q ss_pred HH--HhcCcEEEeCCCCCC----CccHHhhcccCCCCChHHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHH
Q psy1502 410 SK--LRSNISIIPQDPVLF----SGTLRKNLDPFEKYPDYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLI 483 (597)
Q Consensus 410 ~~--lr~~I~~V~Q~~~LF----~gTI~eNI~~~~~~~~e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRI 483 (597)
.. .+..+++++|+..++ .+|++||+.... ..+++.++++..++ +......-..||||||||+
T Consensus 100 ~~~~~~~~~~~~~q~~~~~~~~~~~~v~e~~~~~~--~~~~~~~~l~~lgl----------~~~~~~~~~~LSgGekQRv 167 (538)
T 1yqt_A 100 KLKNGEIRPVVKPQYVDLIPKAVKGKVIELLKKAD--ETGKLEEVVKALEL----------ENVLEREIQHLSGGELQRV 167 (538)
T ss_dssp HHHTTSCCCEEECSCGGGSGGGCCSBHHHHHHHHC--SSSCHHHHHHHTTC----------TTTTTSBGGGCCHHHHHHH
T ss_pred HHHHHhhhhhhhhhhhhhcchhhhccHHHHHhhhh--HHHHHHHHHHHcCC----------ChhhhCChhhCCHHHHHHH
Confidence 11 134689999976543 458999885311 12334455544443 3233344568999999999
Q ss_pred HHHHHHccCCCEEEeecCCCCCCHHHHHHHHHHHHHhcC-CcEEEEeccCchhHhh-cCEEEEEeCCe
Q psy1502 484 CLARAIVRNNVILVLDEATANVDPKTDLLIQRTIRKKFA-DCTVLTIAHRLHTIMD-SDKVLVMDSGV 549 (597)
Q Consensus 484 aIARAll~~p~ILILDEaTSaLD~~te~~I~~~l~~~~~-~~TvI~IaHrlsti~~-~D~Iivl~~G~ 549 (597)
+|||||+.+|++||||||||+||+.+...+.+.|+++.+ ++|+|+|||++..+.. ||+|++|++|.
T Consensus 168 ~iAraL~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~~g~tvi~vsHd~~~~~~~~dri~vl~~~~ 235 (538)
T 1yqt_A 168 AIAAALLRNATFYFFDEPSSYLDIRQRLNAARAIRRLSEEGKSVLVVEHDLAVLDYLSDIIHVVYGEP 235 (538)
T ss_dssp HHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEEEET
T ss_pred HHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEcCcc
Confidence 999999999999999999999999999999999988743 7899999999999875 89999998753
No 55
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=100.00 E-value=6.4e-33 Score=320.19 Aligned_cols=187 Identities=20% Similarity=0.249 Sum_probs=153.4
Q ss_pred ccEEEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccccCCceEEEcceeCCCCChHHHhcCcEE
Q psy1502 339 GKIEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAEVEGVIKIDDIDTEDVPLSKLRSNISI 418 (597)
Q Consensus 339 ~~I~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~~~~G~I~idg~di~~~~~~~lr~~I~~ 418 (597)
..+...|++++|++ +++|+|+||+|++|+++||+||||||||||+++|+| |+| +|.+... +.+++|
T Consensus 434 ~~L~~~~ls~~yg~-~~iL~~vsl~I~~Ge~v~LiGpNGsGKSTLLk~Lag-----G~i--~g~~~~~------~~~~~~ 499 (986)
T 2iw3_A 434 EDLCNCEFSLAYGA-KILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIAN-----GQV--DGFPTQE------ECRTVY 499 (986)
T ss_dssp CEEEEEEEEEEETT-EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHH-----TCS--TTCCCTT------TSCEEE
T ss_pred ceeEEeeEEEEECC-EEeEecceEEEcCCCEEEEECCCCCCHHHHHHHHhC-----CCc--CCCcccc------ceeEEE
Confidence 35888899999964 579999999999999999999999999999999995 554 5554321 124789
Q ss_pred EeCCC-CCC-CccHHhhcccC-CCCChHHHHHHHHHhcH-HHHHHhcCCCchhhhCCCCCCChhHHHHHHHHHHHccCCC
Q psy1502 419 IPQDP-VLF-SGTLRKNLDPF-EKYPDYVLWTALQEVEL-KDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNV 494 (597)
Q Consensus 419 V~Q~~-~LF-~gTI~eNI~~~-~~~~~e~i~~a~~~a~l-~~fI~~l~GldT~vge~G~~LSGGQrQRIaIARAll~~p~ 494 (597)
++|++ .++ +.|+.||+.+. ... ++++.++++..++ .++ ....-..||||||||++|||||+.+|+
T Consensus 500 v~q~~~~~~~~ltv~e~l~~~~~~~-~~~v~~~L~~lgL~~~~----------~~~~~~~LSGGqkQRvaLArAL~~~P~ 568 (986)
T 2iw3_A 500 VEHDIDGTHSDTSVLDFVFESGVGT-KEAIKDKLIEFGFTDEM----------IAMPISALSGGWKMKLALARAVLRNAD 568 (986)
T ss_dssp TTCCCCCCCTTSBHHHHHHTTCSSC-HHHHHHHHHHTTCCHHH----------HHSBGGGCCHHHHHHHHHHHHHHTTCS
T ss_pred EcccccccccCCcHHHHHHHhhcCH-HHHHHHHHHHcCCChhh----------hcCCcccCCHHHHHHHHHHHHHhcCCC
Confidence 99985 444 56999999751 112 5566666666665 232 223345899999999999999999999
Q ss_pred EEEeecCCCCCCHHHHHHHHHHHHHhcCCcEEEEeccCchhHhh-cCEEEEEeCCeEEE
Q psy1502 495 ILVLDEATANVDPKTDLLIQRTIRKKFADCTVLTIAHRLHTIMD-SDKVLVMDSGVAVV 552 (597)
Q Consensus 495 ILILDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrlsti~~-~D~Iivl~~G~Ive 552 (597)
||||||||++||+.+...+.+.|++ .++|+|+|||++..+.. ||+|++|++|+++.
T Consensus 569 lLLLDEPTs~LD~~~~~~l~~~L~~--~g~tvIivSHdl~~l~~~adrii~L~~G~iv~ 625 (986)
T 2iw3_A 569 ILLLDEPTNHLDTVNVAWLVNYLNT--CGITSITISHDSVFLDNVCEYIINYEGLKLRK 625 (986)
T ss_dssp EEEEESTTTTCCHHHHHHHHHHHHH--SCSEEEEECSCHHHHHHHCSEEEEEETTEEEE
T ss_pred EEEEECCccCCCHHHHHHHHHHHHh--CCCEEEEEECCHHHHHHhCCEEEEEECCeeec
Confidence 9999999999999999999999988 58999999999999975 99999999999974
No 56
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.9e-33 Score=312.24 Aligned_cols=187 Identities=19% Similarity=0.265 Sum_probs=152.1
Q ss_pred EEeeEEEeCCCCccceeeeEEEcCC-----cEEEEEcCCCCCHHHHHHHHhccc-cCCceEEEcceeCCCCChHHHhcCc
Q psy1502 343 FQNTNVRYLSGPRVIKNLNITIHPK-----EKIGIVGRTGAGKSSLIAAIFRLA-EVEGVIKIDDIDTEDVPLSKLRSNI 416 (597)
Q Consensus 343 f~nVsf~Y~~~~~vL~~isl~I~~G-----~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I~idg~di~~~~~~~lr~~I 416 (597)
.++++|+|++...+++|+||++++| |++||+||||||||||+++|+|+. |++|+. +. +..+
T Consensus 349 ~~~~~~~y~~~~~~l~~vsl~v~~G~~~~GEiv~iiG~NGsGKSTLlk~l~Gl~~p~~G~~------~~-------~~~i 415 (608)
T 3j16_B 349 SASRAFSYPSLKKTQGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKPDEGQD------IP-------KLNV 415 (608)
T ss_dssp SSSSCCEECCEEEECSSCEEEECCEECCTTCEEEEESCTTSSHHHHHHHHHTSSCCSBCCC------CC-------SCCE
T ss_pred ccceeEEecCcccccCceEEEEecCccccceEEEEECCCCCcHHHHHHHHhcCCCCCCCcC------cc-------CCcE
Confidence 3678999986667899999999999 789999999999999999999987 567862 21 3479
Q ss_pred EEEeCCCC-CCCccHHhhcccC--CC-CChHHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHHHHHHccC
Q psy1502 417 SIIPQDPV-LFSGTLRKNLDPF--EK-YPDYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRN 492 (597)
Q Consensus 417 ~~V~Q~~~-LF~gTI~eNI~~~--~~-~~~e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaIARAll~~ 492 (597)
+|+||++. .|++|+++|+... .. ...+...++++.. |+..........||||||||++|||||+.+
T Consensus 416 ~~~~q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~l~~l----------~l~~~~~~~~~~LSGGqkQRv~iAraL~~~ 485 (608)
T 3j16_B 416 SMKPQKIAPKFPGTVRQLFFKKIRGQFLNPQFQTDVVKPL----------RIDDIIDQEVQHLSGGELQRVAIVLALGIP 485 (608)
T ss_dssp EEECSSCCCCCCSBHHHHHHHHCSSTTTSHHHHHHTHHHH----------TSTTTSSSBSSSCCHHHHHHHHHHHHTTSC
T ss_pred EEecccccccCCccHHHHHHHHhhcccccHHHHHHHHHHc----------CChhhhcCChhhCCHHHHHHHHHHHHHHhC
Confidence 99999965 5678999998531 12 2233333333333 333334455678999999999999999999
Q ss_pred CCEEEeecCCCCCCHHHHHHHHHHHHHhc--CCcEEEEeccCchhHhh-cCEEEEEeC--CeEEE
Q psy1502 493 NVILVLDEATANVDPKTDLLIQRTIRKKF--ADCTVLTIAHRLHTIMD-SDKVLVMDS--GVAVV 552 (597)
Q Consensus 493 p~ILILDEaTSaLD~~te~~I~~~l~~~~--~~~TvI~IaHrlsti~~-~D~Iivl~~--G~Ive 552 (597)
|+||||||||++||+.+...+.+.|+++. .++|+|+|||++..+.. ||||++|++ |+++.
T Consensus 486 p~lLlLDEPT~gLD~~~~~~i~~ll~~l~~~~g~tviivtHdl~~~~~~aDrvivl~~~~g~~~~ 550 (608)
T 3j16_B 486 ADIYLIDEPSAYLDSEQRIICSKVIRRFILHNKKTAFIVEHDFIMATYLADKVIVFEGIPSKNAH 550 (608)
T ss_dssp CSEEEECCTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHCSEEEECEEETTTEEE
T ss_pred CCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeCCCCeEEe
Confidence 99999999999999999999999998874 37999999999999975 999999997 88876
No 57
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=100.00 E-value=1.6e-33 Score=320.69 Aligned_cols=192 Identities=20% Similarity=0.284 Sum_probs=129.2
Q ss_pred CCccceeeeEEEcCCcEEEEEcCCCCCHHHHH---------------------HHHhccc-cC-------CceEEEccee
Q psy1502 353 GPRVIKNLNITIHPKEKIGIVGRTGAGKSSLI---------------------AAIFRLA-EV-------EGVIKIDDID 403 (597)
Q Consensus 353 ~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~---------------------~LL~~l~-~~-------~G~I~idg~d 403 (597)
..++|+||||+|++||++||+||||||||||+ +++.++. |. .|.|.++|.+
T Consensus 30 ~~~~L~~vsl~i~~Ge~~~liGpNGaGKSTLl~~~~~~~~~~~~~~~l~~~~~~~l~~l~~~~~~~i~~~~~~i~~~~~~ 109 (670)
T 3ux8_A 30 RAHNLKNIDVEIPRGKLVVLTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMEKPDVDAIEGLSPAISIDQKT 109 (670)
T ss_dssp CSTTCCSEEEEEETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHTC--------------CCCSEEESCCCEEEESSCC
T ss_pred CccceeccEEEECCCCEEEEECCCCCCHHHHhcccccccccccccccchhhhhhhhcccccCCccceeccccceEecCch
Confidence 35699999999999999999999999999998 7777765 34 4667777776
Q ss_pred CCCCChHHHhcCcEEEeCCCCCC--------------------CccHHhhcccCCCC--Ch--HH-----HHHHHHHhcH
Q psy1502 404 TEDVPLSKLRSNISIIPQDPVLF--------------------SGTLRKNLDPFEKY--PD--YV-----LWTALQEVEL 454 (597)
Q Consensus 404 i~~~~~~~lr~~I~~V~Q~~~LF--------------------~gTI~eNI~~~~~~--~~--e~-----i~~a~~~a~l 454 (597)
.... .++.+++|+|.+.++ ..|++||+.+.... .+ .+ +.++++..
T Consensus 110 ~~~~----~~~~ig~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 183 (670)
T 3ux8_A 110 TSRN----PRSTVGTVTEIYDYLRLLFARIGRLVGGKHIGEVTAMSVTEALAFFDGLELTEKEAQIARLILREIRDRL-- 183 (670)
T ss_dssp ---------CCBHHHHTTCC-------------------------CC--------------------------CHHHH--
T ss_pred hhcc----chhceeeeechhhhHHHHHhhhcccccccccccccCCcHHHHHHHhhccccchhhhHHHHHHHHHHHHHH--
Confidence 5432 245677777765432 45899999763211 11 11 11111111
Q ss_pred HHHHHhcCCCchh-hhCCCCCCChhHHHHHHHHHHHccCCC--EEEeecCCCCCCHHHHHHHHHHHHHhc-CCcEEEEec
Q psy1502 455 KDMIMEGAGLNMT-VYEGGTNFSVGQRQLICLARAIVRNNV--ILVLDEATANVDPKTDLLIQRTIRKKF-ADCTVLTIA 530 (597)
Q Consensus 455 ~~fI~~l~GldT~-vge~G~~LSGGQrQRIaIARAll~~p~--ILILDEaTSaLD~~te~~I~~~l~~~~-~~~TvI~Ia 530 (597)
+..+. -|++.. .......||||||||++|||||+.+|+ +||||||||+||+.+...+.+.|+++. .+.|+|+||
T Consensus 184 -~~l~~-~gL~~~~~~~~~~~LSGGe~QRv~iArAL~~~p~~~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~g~tvi~vt 261 (670)
T 3ux8_A 184 -GFLQN-VGLDYLTLSRSAGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVE 261 (670)
T ss_dssp -HHHHH-TTCTTCCTTCBGGGSCHHHHHHHHHHHHHHTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHHTTCEEEEEC
T ss_pred -HHHHH-cCCchhhhcCCcccCCHHHHHHHHHHHHHhhCCCCCEEEEECCccCCCHHHHHHHHHHHHHHHHcCCEEEEEe
Confidence 11222 344332 344566899999999999999999998 999999999999999999999998874 478999999
Q ss_pred cCchhHhhcCEEEEE------eCCeEEE
Q psy1502 531 HRLHTIMDSDKVLVM------DSGVAVV 552 (597)
Q Consensus 531 Hrlsti~~~D~Iivl------~~G~Ive 552 (597)
|+++.+..||+|++| ++|++++
T Consensus 262 Hd~~~~~~~d~ii~l~~g~~~~~G~i~~ 289 (670)
T 3ux8_A 262 HDEDTMLAADYLIDIGPGAGIHGGEVVA 289 (670)
T ss_dssp CCHHHHHHCSEEEEECSSSGGGCCSEEE
T ss_pred CCHHHHhhCCEEEEecccccccCCEEEE
Confidence 999999899999999 8999987
No 58
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=100.00 E-value=8.9e-34 Score=322.86 Aligned_cols=190 Identities=25% Similarity=0.376 Sum_probs=139.4
Q ss_pred CccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHh----------------------ccccCCceEEEcceeCCCCChHH
Q psy1502 354 PRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIF----------------------RLAEVEGVIKIDDIDTEDVPLSK 411 (597)
Q Consensus 354 ~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~----------------------~l~~~~G~I~idg~di~~~~~~~ 411 (597)
.++|+||||+|++||++||+||||||||||+++|+ |+.+..|.|.++|.++...+...
T Consensus 335 ~~~L~~vsl~I~~Ge~vaIiGpnGsGKSTLl~~i~~~~~~~~~~~~~~~~g~~~~i~gl~~~~~~i~~~~~~~~~~~~~~ 414 (670)
T 3ux8_A 335 EHNLKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVLYKALAQKLHRAKAKPGEHRDIRGLEHLDKVIDIDQSPIGRTPRSN 414 (670)
T ss_dssp STTCCSEEEEEETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHCCCSCCCSCSEEECGGGCSEEEECCSSCSCSSTTCC
T ss_pred ccccccceeEecCCCEEEEEeeCCCCHHHHHHHHHHHHHHHHhhhcccccccccccccccccCceeEeccccCCCCCCcc
Confidence 46899999999999999999999999999998764 33345678999999887544221
Q ss_pred Hhc-----------------------------------------CcEEEeCCCCCC------------------------
Q psy1502 412 LRS-----------------------------------------NISIIPQDPVLF------------------------ 426 (597)
Q Consensus 412 lr~-----------------------------------------~I~~V~Q~~~LF------------------------ 426 (597)
... ..|+++|+..++
T Consensus 415 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 494 (670)
T 3ux8_A 415 PATYTGVFDDIRDVFASTNEAKVRGYKKGRFSFNVKGGRCEACHGDGIIKIEMHFLPDVYVPCEVCHGKRYNRETLEVTY 494 (670)
T ss_dssp HHHHHTHHHHHHHHHHTSHHHHHHTCCGGGGCTTSTTTBCTTTTTCCC------------CCCTTTTTCCBCHHHHTCCB
T ss_pred hhhhhhhhHHHHHHhcccchhhhcccccccccccCCCCccccccccceEeeecccccccccccccccCcccChhhhheee
Confidence 111 123344433322
Q ss_pred ---------CccHHhhcccCCCCChHHHHHHHHHhcHHHHHHhcCCCc-hhhhCCCCCCChhHHHHHHHHHHHccCC---
Q psy1502 427 ---------SGTLRKNLDPFEKYPDYVLWTALQEVELKDMIMEGAGLN-MTVYEGGTNFSVGQRQLICLARAIVRNN--- 493 (597)
Q Consensus 427 ---------~gTI~eNI~~~~~~~~e~i~~a~~~a~l~~fI~~l~Gld-T~vge~G~~LSGGQrQRIaIARAll~~p--- 493 (597)
+.|++||+.+.....+ ..++ .+.+.. -|+. ...+.....||||||||++|||||+++|
T Consensus 495 ~~~~~~~~~~ltv~e~l~~~~~~~~--~~~~------~~~l~~-~~l~~~~~~~~~~~LSgG~~qrv~iAraL~~~p~~p 565 (670)
T 3ux8_A 495 KGKNIAEVLDMTVEDALDFFASIPK--IKRK------LETLYD-VGLGYMKLGQPATTLSGGEAQRVKLAAELHRRSNGR 565 (670)
T ss_dssp TTBCHHHHHTSBHHHHHHHTTTCHH--HHHH------HHHHHH-TTCTTSBTTCCGGGCCHHHHHHHHHHHHHHSCCCSC
T ss_pred cCCCHHHHhhCCHHHHHHHHHHhhh--HHHH------HHHHHH-cCCchhhccCCchhCCHHHHHHHHHHHHHhhCCCCC
Confidence 2467777665432211 1111 122222 2333 2356777899999999999999999887
Q ss_pred CEEEeecCCCCCCHHHHHHHHHHHHHhc-CCcEEEEeccCchhHhhcCEEEEE------eCCeEEE
Q psy1502 494 VILVLDEATANVDPKTDLLIQRTIRKKF-ADCTVLTIAHRLHTIMDSDKVLVM------DSGVAVV 552 (597)
Q Consensus 494 ~ILILDEaTSaLD~~te~~I~~~l~~~~-~~~TvI~IaHrlsti~~~D~Iivl------~~G~Ive 552 (597)
+|||||||||+||+.+...|.+.|+++. .++|+|+|||+++.+..||+|++| ++|+|++
T Consensus 566 ~llllDEPt~~LD~~~~~~i~~~l~~l~~~g~tvi~vtHd~~~~~~~d~i~~l~~~~g~~~G~i~~ 631 (670)
T 3ux8_A 566 TLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIEHNLDVIKTADYIIDLGPEGGDRGGQIVA 631 (670)
T ss_dssp EEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHTTCSEEEEEESSSGGGCCEEEE
T ss_pred cEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHhCCEEEEecCCcCCCCCEEEE
Confidence 5999999999999999999999998875 478999999999999999999999 8999998
No 59
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=99.98 E-value=6.1e-33 Score=309.65 Aligned_cols=195 Identities=19% Similarity=0.206 Sum_probs=145.5
Q ss_pred eeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc-cCCceE-----------EEcceeCCCCChHHH
Q psy1502 345 NTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EVEGVI-----------KIDDIDTEDVPLSKL 412 (597)
Q Consensus 345 nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I-----------~idg~di~~~~~~~l 412 (597)
|++++|......|++++ ++++||.+||+||||||||||+++|+|++ |++|+| .++|.++..+....+
T Consensus 82 ~~~~~Y~~~~~~l~~l~-~~~~Gei~~LvGpNGaGKSTLLkiL~Gll~P~~G~i~~~~~~~~~~~~~~g~~~~~~~~~~~ 160 (608)
T 3j16_B 82 HVTHRYSANSFKLHRLP-TPRPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRFDDPPEWQEIIKYFRGSELQNYFTKML 160 (608)
T ss_dssp TEEEECSTTSCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSCCCTTTTCCSSCHHHHHHHTTTSTHHHHHHHHH
T ss_pred CeEEEECCCceeecCCC-CCCCCCEEEEECCCCChHHHHHHHHhcCCCCCCceEecccchhhhhheecChhhhhhhhHHH
Confidence 47899966556788877 58999999999999999999999999987 578998 334444333323333
Q ss_pred hcCcE--EEeCCCCC----CC---ccHHhhcccCCCCChHHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHH
Q psy1502 413 RSNIS--IIPQDPVL----FS---GTLRKNLDPFEKYPDYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLI 483 (597)
Q Consensus 413 r~~I~--~V~Q~~~L----F~---gTI~eNI~~~~~~~~e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRI 483 (597)
.+.+. +.+|.... +. .++.+++.......++++.++++.. |++......-..||||||||+
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~~~~l~~~----------gl~~~~~~~~~~LSgGe~Qrv 230 (608)
T 3j16_B 161 EDDIKAIIKPQYVDNIPRAIKGPVQKVGELLKLRMEKSPEDVKRYIKIL----------QLENVLKRDIEKLSGGELQRF 230 (608)
T ss_dssp HTSCCCEEECCCTTTHHHHCSSSSSHHHHHHHHHCCSCHHHHHHHHHHH----------TCTGGGGSCTTTCCHHHHHHH
T ss_pred HHhhhhhhchhhhhhhhhhhcchhhHHHHHHhhhhhhHHHHHHHHHHHc----------CCcchhCCChHHCCHHHHHHH
Confidence 44443 33333211 11 1455554432223344555555444 444455666779999999999
Q ss_pred HHHHHHccCCCEEEeecCCCCCCHHHHHHHHHHHHHhcC-CcEEEEeccCchhHhh-cCEEEEEeCCeE
Q psy1502 484 CLARAIVRNNVILVLDEATANVDPKTDLLIQRTIRKKFA-DCTVLTIAHRLHTIMD-SDKVLVMDSGVA 550 (597)
Q Consensus 484 aIARAll~~p~ILILDEaTSaLD~~te~~I~~~l~~~~~-~~TvI~IaHrlsti~~-~D~Iivl~~G~I 550 (597)
+|||||+++|+|||||||||+||+.+...+.+.|+++.+ ++|+|+|+|+++.+.. ||+|++|++|..
T Consensus 231 ~iAraL~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHdl~~~~~~~drv~vl~~~~~ 299 (608)
T 3j16_B 231 AIGMSCVQEADVYMFDEPSSYLDVKQRLNAAQIIRSLLAPTKYVICVEHDLSVLDYLSDFVCIIYGVPS 299 (608)
T ss_dssp HHHHHHHSCCSEEEEECTTTTCCHHHHHHHHHHHHGGGTTTCEEEEECSCHHHHHHHCSEEEEEESCTT
T ss_pred HHHHHHHhCCCEEEEECcccCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeCCcc
Confidence 999999999999999999999999999999999998765 7899999999999975 999999998754
No 60
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=99.97 E-value=7.8e-33 Score=305.47 Aligned_cols=193 Identities=13% Similarity=0.200 Sum_probs=147.1
Q ss_pred EeeEEEeCCCCccceeeeEEE-cCCcEEEEEcCCCCCHHHHHHHHhccc-cCCceE-----------EEcceeCCCCChH
Q psy1502 344 QNTNVRYLSGPRVIKNLNITI-HPKEKIGIVGRTGAGKSSLIAAIFRLA-EVEGVI-----------KIDDIDTEDVPLS 410 (597)
Q Consensus 344 ~nVsf~Y~~~~~vL~~isl~I-~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I-----------~idg~di~~~~~~ 410 (597)
++++.+|..+ -++-..|.+ ++||.+||+||||||||||+++|+|++ |++|+| .++|.++..+...
T Consensus 3 ~~~~~~~~~~--~f~l~~l~~~~~Gei~gLiGpNGaGKSTLlkiL~Gl~~p~~G~i~~~~~~~~~~~~~~g~~i~~~~~~ 80 (538)
T 3ozx_A 3 GEVIHRYKVN--GFKLFGLPTPKNNTILGVLGKNGVGKTTVLKILAGEIIPNFGDPNSKVGKDEVLKRFRGKEIYNYFKE 80 (538)
T ss_dssp CCEEEESSTT--SCEEECCCCCCTTEEEEEECCTTSSHHHHHHHHTTSSCCCTTCTTSCCCHHHHHHHHTTSTTHHHHHH
T ss_pred CCCceecCCC--ceeecCCCCCCCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCccccccchhhHHhhcCCeeHHHHHHH
Confidence 3567889533 344444555 499999999999999999999999987 678998 6777766433222
Q ss_pred HH------hcCcEEEeCCCCCCCccHHhhcccCCCCChHHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHH
Q psy1502 411 KL------RSNISIIPQDPVLFSGTLRKNLDPFEKYPDYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLIC 484 (597)
Q Consensus 411 ~l------r~~I~~V~Q~~~LF~gTI~eNI~~~~~~~~e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIa 484 (597)
.. ...+.+++|.+.++.+|+++++.... ..+++.++++..++ +......-..||||||||++
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~~--~~~~~~~~l~~l~l----------~~~~~~~~~~LSgGe~Qrv~ 148 (538)
T 3ozx_A 81 LYSNELKIVHKIQYVEYASKFLKGTVNEILTKID--ERGKKDEVKELLNM----------TNLWNKDANILSGGGLQRLL 148 (538)
T ss_dssp HHTTCCCEEEECSCTTGGGTTCCSBHHHHHHHHC--CSSCHHHHHHHTTC----------GGGTTSBGGGCCHHHHHHHH
T ss_pred HhhcccchhhccchhhhhhhhccCcHHHHhhcch--hHHHHHHHHHHcCC----------chhhcCChhhCCHHHHHHHH
Confidence 11 22345566666778889998875321 12334455554443 22233344679999999999
Q ss_pred HHHHHccCCCEEEeecCCCCCCHHHHHHHHHHHHHhcCCcEEEEeccCchhHhh-cCEEEEEeCCeE
Q psy1502 485 LARAIVRNNVILVLDEATANVDPKTDLLIQRTIRKKFADCTVLTIAHRLHTIMD-SDKVLVMDSGVA 550 (597)
Q Consensus 485 IARAll~~p~ILILDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrlsti~~-~D~Iivl~~G~I 550 (597)
|||||+++|+|||||||||+||+.+...+.+.|+++.+++|+|+|+|+++.+.. ||+|++|++|..
T Consensus 149 iA~aL~~~p~illlDEPts~LD~~~~~~l~~~l~~l~~g~tii~vsHdl~~~~~~~d~i~vl~~~~~ 215 (538)
T 3ozx_A 149 VAASLLREADVYIFDQPSSYLDVRERMNMAKAIRELLKNKYVIVVDHDLIVLDYLTDLIHIIYGESS 215 (538)
T ss_dssp HHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHCTTSEEEEECSCHHHHHHHCSEEEEEEEETT
T ss_pred HHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHhCCCEEEEEEeChHHHHhhCCEEEEecCCcc
Confidence 999999999999999999999999999999999998889999999999999875 999999997643
No 61
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=99.97 E-value=3.2e-32 Score=292.94 Aligned_cols=208 Identities=17% Similarity=0.143 Sum_probs=154.9
Q ss_pred ccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc---------------------------------------cCCc
Q psy1502 355 RVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA---------------------------------------EVEG 395 (597)
Q Consensus 355 ~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~---------------------------------------~~~G 395 (597)
.+|+++||++++| .++||||||||||||+++|.++. +.+|
T Consensus 49 ~~l~~v~l~~~~G-~~~lvG~NGaGKStLl~aI~~l~~~~~~~~~i~~g~~~~~v~~~~~~~~~~~~~~l~r~~~~~~~~ 127 (415)
T 4aby_A 49 ATITQLELELGGG-FCAFTGETGAGKSIIVDALGLLLGGRANHDLIRSGEKELLVTGFWGDGDESEADSASRRLSSAGRG 127 (415)
T ss_dssp TTEEEEEEECCSS-EEEEEESHHHHHHHHTHHHHHHTTCCCCGGGBCTTCSEEEEEEEC--------CEEEEEEETTSCE
T ss_pred cceeeEEEecCCC-cEEEECCCCCCHHHHHHHHHHHhCCCccHHHhcCCCCeEEEEEEEEecCCCceEEEEEEEecCCce
Confidence 4799999999999 99999999999999999995543 2368
Q ss_pred eEEEcceeCCCCChHHHhcC-cEEEeCCCCCCCccHHhhcccCCCCCh--------------------------------
Q psy1502 396 VIKIDDIDTEDVPLSKLRSN-ISIIPQDPVLFSGTLRKNLDPFEKYPD-------------------------------- 442 (597)
Q Consensus 396 ~I~idg~di~~~~~~~lr~~-I~~V~Q~~~LF~gTI~eNI~~~~~~~~-------------------------------- 442 (597)
.+.+||.+++..+...+.+. +++++|++.++-.+-.++..+.+....
T Consensus 128 ~i~ing~~~~~~~~~~~~~~~i~~~~q~~~l~l~~~~~~r~~ld~~~~~~~~~~~~~~~~y~~~~~~~~~l~~~~~~~~~ 207 (415)
T 4aby_A 128 AARLSGEVVSVRELQEWAQGRLTIHWQHSAVSLLSPANQRGLLDRRVTKEAQAYAAAHAAWREAVSRLERLQASESSKHP 207 (415)
T ss_dssp EEEETTEEECHHHHHHHHTTTEEEETTTCTTTTSSHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHC---------
T ss_pred EEEECCEECCHHHHHHHHhhceEEecCcccccccCHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHhhhhhhcC
Confidence 89999999987777777777 899999998887766555432111110
Q ss_pred -------------HHHHHHHHH------h---cHHHHHHh-cC--C--------------------Cch---hhhCCCCC
Q psy1502 443 -------------YVLWTALQE------V---ELKDMIME-GA--G--------------------LNM---TVYEGGTN 474 (597)
Q Consensus 443 -------------e~i~~a~~~------a---~l~~fI~~-l~--G--------------------ldT---~vge~G~~ 474 (597)
+++.+.+.. . .+.+.+.. +. | ++. .++.++..
T Consensus 208 ~~i~~~~~l~~~~~~l~~~~~~l~~~R~~~~~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 287 (415)
T 4aby_A 208 TSLVPRGSVDALHAELLKVGQALDAAREREAEPLVDSLLAVIRELGMPHARMEFALSALAEPAAYGLSDVLLRFSANPGE 287 (415)
T ss_dssp --CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCTTCEEEEEEEEEEEEETTEEEEEEEEEESSSSC
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceEEEEEeeccCCCCCCCceEEEEEEcCCCC
Confidence 000000000 0 01111111 11 1 111 23444433
Q ss_pred --------CChhHHHHHHHHHHHccCC--CEEEeecCCCCCCHHHHHHHHHHHHHhcCCcEEEEeccCchhHhhcCEEEE
Q psy1502 475 --------FSVGQRQLICLARAIVRNN--VILVLDEATANVDPKTDLLIQRTIRKKFADCTVLTIAHRLHTIMDSDKVLV 544 (597)
Q Consensus 475 --------LSGGQrQRIaIARAll~~p--~ILILDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrlsti~~~D~Iiv 544 (597)
||||||||++|||+|+.+| ++||||||||+||+++...+.+.|+++.+++|+|+|||+++.+..||+|++
T Consensus 288 ~~~~~~~~lSgGe~qrl~lA~~l~~~~~~~~LlLDEpt~~LD~~~~~~l~~~L~~l~~~~~vi~itH~~~~~~~~d~i~~ 367 (415)
T 4aby_A 288 ELGPLSDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLADTRQVLVVTHLAQIAARAHHHYK 367 (415)
T ss_dssp CCCBGGGCSCHHHHHHHHHHHHHHHCCSSSEEEESSTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSCHHHHTTCSEEEE
T ss_pred cccchhhhcCHhHHHHHHHHHHHHhCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhCCCEEEEEeCcHHHHhhcCeEEE
Confidence 8999999999999999999 999999999999999999999999999888999999999999989999999
Q ss_pred E----eCCeEEE-----ecCchhHhhHh
Q psy1502 545 M----DSGVAVV-----SSFGFFFSKDL 563 (597)
Q Consensus 545 l----~~G~Ive-----~~~g~y~~l~~ 563 (597)
| ++|+++. ..+....++..
T Consensus 368 l~k~~~~G~~~~~~~~l~~~~~~~ei~~ 395 (415)
T 4aby_A 368 VEKQVEDGRTVSHVRLLTGDERLEEIAR 395 (415)
T ss_dssp EEEEEETTEEEEEEEECCSHHHHHHHHH
T ss_pred EEEeccCCceEEEEEECCchhhHHHHHH
Confidence 9 9999876 23334555554
No 62
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=99.97 E-value=4.7e-31 Score=304.53 Aligned_cols=198 Identities=21% Similarity=0.313 Sum_probs=138.6
Q ss_pred CccceeeeEEEcCCcEEEEEcCCCCCHHHHH---------HHHhcccc-------CC------ceEEEcceeCCCCChH-
Q psy1502 354 PRVIKNLNITIHPKEKIGIVGRTGAGKSSLI---------AAIFRLAE-------VE------GVIKIDDIDTEDVPLS- 410 (597)
Q Consensus 354 ~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~---------~LL~~l~~-------~~------G~I~idg~di~~~~~~- 410 (597)
.+.|+||||+|++|+.+||+|+||||||||+ +++.+... .+ +.|.+|..++......
T Consensus 597 ~~~Lk~Vsl~I~~Geiv~I~G~SGSGKSTLl~~~l~~~l~~~l~~~~~~~g~~~~~~G~~~i~~~i~idq~pig~~~rs~ 676 (916)
T 3pih_A 597 HNNLKNIDVEIPLGVFVCVTGVSGSGKSSLVMETLYPALMNLLHKTKLPAGEFDSIEGHENIDKMIAIDQSPIGRTPRSN 676 (916)
T ss_dssp STTCCSEEEEEESSSEEEEECSTTSSHHHHHHHTHHHHHHHHHHCCCCCCCCCSEEECGGGCCEEEEECSCCCCCCTTCC
T ss_pred cccccccceEEcCCcEEEEEccCCCChhhhHHHHHHHHHHHHhccccccccccccccccccccceEeecccccccccccc
Confidence 3579999999999999999999999999997 33333221 12 3356666665432110
Q ss_pred ---------HH-------------------------------hcCcEEEeCCCCCCCc-cHHhhcccCCCCC--------
Q psy1502 411 ---------KL-------------------------------RSNISIIPQDPVLFSG-TLRKNLDPFEKYP-------- 441 (597)
Q Consensus 411 ---------~l-------------------------------r~~I~~V~Q~~~LF~g-TI~eNI~~~~~~~-------- 441 (597)
.+ ++..|+++|+..++.+ ++..|...+..+.
T Consensus 677 ~at~~~~~~~ir~lfa~~~~a~~~g~~~~~fs~n~~~grc~~c~g~G~i~~e~~flp~~~v~c~~c~g~r~~~e~l~i~~ 756 (916)
T 3pih_A 677 PATYTKVFDEIRSLFAMTPAAKARGYNKSRFSFNLKGGRCEACQGQGYVKIEMLFLPDVYVECDVCKGKRYNRETLEITY 756 (916)
T ss_dssp HHHHSSHHHHHHHHHTTSHHHHHSSCCGGGGCTTSTTTBCTTTTTSSEEEECCTTSCCEEEECTTTTTSCBCTTGGGCCB
T ss_pred ccchhhhHHHHHHHhccchHHHhcccccccccccccccccccccCcceEEEeeeccCcceeecccccccccchhhhhhhh
Confidence 01 1346788888776643 2222222111000
Q ss_pred ----hH-----HHHHHHHHh-------cHHHHHHhcCCCch-hhhCCCCCCChhHHHHHHHHHHHccCC---CEEEeecC
Q psy1502 442 ----DY-----VLWTALQEV-------ELKDMIMEGAGLNM-TVYEGGTNFSVGQRQLICLARAIVRNN---VILVLDEA 501 (597)
Q Consensus 442 ----~e-----~i~~a~~~a-------~l~~fI~~l~GldT-~vge~G~~LSGGQrQRIaIARAll~~p---~ILILDEa 501 (597)
-. .+.++++.. ...+.+.. -|+.. .+|+.+.+|||||||||+|||||+++| +|||||||
T Consensus 757 ~g~~i~~vl~~tv~eal~f~~~~~~~~~~~~~L~~-vGL~~~~lgq~~~~LSGGErQRV~LAraL~~~p~~p~LLILDEP 835 (916)
T 3pih_A 757 KGKNISDILDMTVDEALEFFKNIPSIKRTLQVLHD-VGLGYVKLGQPATTLSGGEAQRIKLASELRKRDTGRTLYILDEP 835 (916)
T ss_dssp TTBCHHHHHSSBHHHHHHHTTTCHHHHHHHHHHHH-TTGGGSBTTCCSTTCCHHHHHHHHHHHHHTSCCCSSEEEEEEST
T ss_pred ccCCHHHHhhCCHHHHHHHHhcchhHHHHHHHHHH-cCCchhhccCCccCCCHHHHHHHHHHHHHhhCCCCCCEEEEECC
Confidence 00 011222111 11122222 24433 478999999999999999999999876 79999999
Q ss_pred CCCCCHHHHHHHHHHHHHhc-CCcEEEEeccCchhHhhcCEEEEE------eCCeEEE
Q psy1502 502 TANVDPKTDLLIQRTIRKKF-ADCTVLTIAHRLHTIMDSDKVLVM------DSGVAVV 552 (597)
Q Consensus 502 TSaLD~~te~~I~~~l~~~~-~~~TvI~IaHrlsti~~~D~Iivl------~~G~Ive 552 (597)
|++||+.+...+++.|+++. .+.|+|+|+|+++.++.||+|++| ++|+|++
T Consensus 836 TsGLD~~~~~~L~~lL~~L~~~G~TVIvI~HdL~~i~~ADrIivLgp~gg~~~G~Iv~ 893 (916)
T 3pih_A 836 TVGLHFEDVRKLVEVLHRLVDRGNTVIVIEHNLDVIKNADHIIDLGPEGGKEGGYIVA 893 (916)
T ss_dssp TTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHTTCSEEEEEESSSGGGCCEEEE
T ss_pred CCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhCCEEEEecCCCCCCCCEEEE
Confidence 99999999999999999875 489999999999999999999999 8999998
No 63
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=99.97 E-value=1.1e-33 Score=306.28 Aligned_cols=181 Identities=10% Similarity=0.053 Sum_probs=145.0
Q ss_pred cEEEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc-cCCc-e-EEEcceeCCCCChHHHhcCc
Q psy1502 340 KIEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EVEG-V-IKIDDIDTEDVPLSKLRSNI 416 (597)
Q Consensus 340 ~I~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G-~-I~idg~di~~~~~~~lr~~I 416 (597)
.++++||+|+|+ ++||++++|++++|+||||||||||+++|+|++ +.+| + |.+|| + .++.+
T Consensus 118 mi~~~nl~~~y~-------~vsl~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~~p~~G~~pI~vdg-~--------~~~~i 181 (460)
T 2npi_A 118 MKYIYNLHFMLE-------KIRMSNFEGPRVVIVGGSQTGKTSLSRTLCSYALKFNAYQPLYINL-D--------PQQPI 181 (460)
T ss_dssp HHHHHHHHHHHH-------HHHHHSSSCCCEEEEESTTSSHHHHHHHHHHTTHHHHCCCCEEEEC-C--------TTSCS
T ss_pred hhhhhhhhehhh-------cCceEeCCCCEEEEECCCCCCHHHHHHHHhCcccccCCceeEEEcC-C--------ccCCe
Confidence 366777777773 799999999999999999999999999999998 5789 8 99998 1 37889
Q ss_pred EEEeCCCCCCC----ccHHhhcccCCCC-----ChHHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHHHH
Q psy1502 417 SIIPQDPVLFS----GTLRKNLDPFEKY-----PDYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLAR 487 (597)
Q Consensus 417 ~~V~Q~~~LF~----gTI~eNI~~~~~~-----~~e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaIAR 487 (597)
+||||++.+|. .|++||+ ++... .++++.++++. -|++.... ..+||||||||++|||
T Consensus 182 ~~vpq~~~l~~~~~~~tv~eni-~~~~~~~~~~~~~~~~~ll~~----------~gl~~~~~--~~~LSgGq~qrlalAr 248 (460)
T 2npi_A 182 FTVPGCISATPISDILDAQLPT-WGQSLTSGATLLHNKQPMVKN----------FGLERINE--NKDLYLECISQLGQVV 248 (460)
T ss_dssp SSCSSCCEEEECCSCCCTTCTT-CSCBCBSSCCSSCCBCCEECC----------CCSSSGGG--CHHHHHHHHHHHHHHH
T ss_pred eeeccchhhcccccccchhhhh-cccccccCcchHHHHHHHHHH----------hCCCcccc--hhhhhHHHHHHHHHHH
Confidence 99999986543 5899999 64221 11111111111 36665543 7799999999999999
Q ss_pred H--HccCCCE----EEeec-CCCCCCHHHHHHHHHHHHHhcCCcEEEEeccCch------hH-hhcCE-----EEEEe-C
Q psy1502 488 A--IVRNNVI----LVLDE-ATANVDPKTDLLIQRTIRKKFADCTVLTIAHRLH------TI-MDSDK-----VLVMD-S 547 (597)
Q Consensus 488 A--ll~~p~I----LILDE-aTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrls------ti-~~~D~-----Iivl~-~ 547 (597)
| |+.+|++ ||||| |||+||+. ...+.+.++++ +.|+|+|+|+.+ .+ ..||+ |++|+ +
T Consensus 249 a~rL~~~p~i~~sGLlLDEpPts~LD~~-~~~l~~l~~~~--~~tviiVth~~~~~l~~~~~~~~~dr~~~~~vi~l~k~ 325 (460)
T 2npi_A 249 GQRLHLDPQVRRSGCIVDTPSISQLDEN-LAELHHIIEKL--NVNIMLVLCSETDPLWEKVKKTFGPELGNNNIFFIPKL 325 (460)
T ss_dssp HHHHHHCHHHHHSCEEEECCCGGGSCSS-CHHHHHHHHHT--TCCEEEEECCSSCTHHHHHHHHHHHHHCGGGEEEECCC
T ss_pred HHHhccCcccCcceEEEeCCcccccChh-HHHHHHHHHHh--CCCEEEEEccCchhhhHHHHHHhcccccCCEEEEEeCC
Confidence 9 9999999 99999 99999999 67777777665 689999999988 44 45999 99999 9
Q ss_pred CeEEE
Q psy1502 548 GVAVV 552 (597)
Q Consensus 548 G~Ive 552 (597)
|+|++
T Consensus 326 G~iv~ 330 (460)
T 2npi_A 326 DGVSA 330 (460)
T ss_dssp TTCCC
T ss_pred CcEEE
Confidence 99984
No 64
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=99.96 E-value=1.6e-29 Score=289.61 Aligned_cols=198 Identities=24% Similarity=0.353 Sum_probs=145.5
Q ss_pred cEEEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHh-c-c----c---cCCc-------------eE
Q psy1502 340 KIEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIF-R-L----A---EVEG-------------VI 397 (597)
Q Consensus 340 ~I~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~-~-l----~---~~~G-------------~I 397 (597)
.++++|++. .+|+||||+|++|+.+||+|+||||||||++.|+ | + + +..| .|
T Consensus 629 ~L~v~~l~~------~~Lk~Vsl~I~~Geiv~I~G~nGSGKSTLl~~ll~g~l~~~l~~~~~~~G~~~~i~G~~~~~~~I 702 (972)
T 2r6f_A 629 WLEVVGARE------HNLKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVLYKALAQKLHRAKAKPGEHRDIRGLEHLDKVI 702 (972)
T ss_dssp EEEEEEECS------SSCCSEEEEEESSSEEECCBCTTSSHHHHHTTTHHHHHHHHHHCCCCCCCSCSEEECGGGCSEEE
T ss_pred EEEEecCcc------cccccceEEEcCCCEEEEEcCCCCCHHHHHHHHHHHHHHHhhcCCCCCCCceeeeccccccceEE
Confidence 488898862 3799999999999999999999999999999864 2 1 1 1223 37
Q ss_pred EEcceeCCCCC---hH-------HHh---------cCcEEEeCCCCC---------------------C-----------
Q psy1502 398 KIDDIDTEDVP---LS-------KLR---------SNISIIPQDPVL---------------------F----------- 426 (597)
Q Consensus 398 ~idg~di~~~~---~~-------~lr---------~~I~~V~Q~~~L---------------------F----------- 426 (597)
.+||.++..-. +. ..| +.+||++|...+ |
T Consensus 703 ~idq~pig~~~rs~paty~~v~d~ir~lfa~~~ear~~Gy~~~~fsfn~~ggrC~~C~g~G~i~~em~fl~~v~~~ce~c 782 (972)
T 2r6f_A 703 DIDQSPIGRTPRSNPATYTGVFDDIRDVFASTNEAKVRGYKKGRFSFNVKGGRCEACHGDGIIKIEMHFLPDVYVPCEVC 782 (972)
T ss_dssp EECSSCSCSSTTCCHHHHHTHHHHHHHHHHTSHHHHHTTCCTTTTCTTSTTTBCTTTTTCSEEEECCSSSCCEEEECTTT
T ss_pred EEcCcccccCccccchhhhhHHHHHHHHhccCHHHHHhcccccccccccccccccccccccceeeehhcccccccccccc
Confidence 88988875321 11 111 346888886322 1
Q ss_pred -----------------------CccHHhhcccCCCCChHHHHHHHHHhcHHHHHHhcCCCch-hhhCCCCCCChhHHHH
Q psy1502 427 -----------------------SGTLRKNLDPFEKYPDYVLWTALQEVELKDMIMEGAGLNM-TVYEGGTNFSVGQRQL 482 (597)
Q Consensus 427 -----------------------~gTI~eNI~~~~~~~~e~i~~a~~~a~l~~fI~~l~GldT-~vge~G~~LSGGQrQR 482 (597)
+.|+.||+.+..... ++. ...+.++. -|+.. ..+.....||||||||
T Consensus 783 ~G~r~~~e~l~v~~~g~sI~dvl~ltv~e~l~~~~~~~--~~~------~~~~~L~~-~gL~~~~l~~~~~~LSGGekQR 853 (972)
T 2r6f_A 783 HGKRYNRETLEVTYKGKNIAEVLDMTVEDALDFFASIP--KIK------RKLETLYD-VGLGYMKLGQPATTLSGGEAQR 853 (972)
T ss_dssp TTCCBCTTGGGCCBTTBCHHHHHTSBHHHHHHHTCSCH--HHH------HHHHHHHH-TTCSSSBTTCCGGGCCHHHHHH
T ss_pred ccccccchhhhhhccCCCHHHhhhcCHHHHHHHHhcch--hHH------HHHHHHHH-cCCCcccccCchhhCCHHHHHH
Confidence 012233332221110 111 11233333 36665 5788889999999999
Q ss_pred HHHHHHHccCC---CEEEeecCCCCCCHHHHHHHHHHHHHhc-CCcEEEEeccCchhHhhcCEEEEE------eCCeEEE
Q psy1502 483 ICLARAIVRNN---VILVLDEATANVDPKTDLLIQRTIRKKF-ADCTVLTIAHRLHTIMDSDKVLVM------DSGVAVV 552 (597)
Q Consensus 483 IaIARAll~~p---~ILILDEaTSaLD~~te~~I~~~l~~~~-~~~TvI~IaHrlsti~~~D~Iivl------~~G~Ive 552 (597)
++|||||+++| +||||||||++||+.+...+.+.|+++. .+.|+|+|+|++..+..||+|++| ++|+|+.
T Consensus 854 v~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~TVIvisHdl~~i~~aDrIivL~p~gG~~~G~Iv~ 933 (972)
T 2r6f_A 854 VKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIEHNLDVIKTADYIIDLGPEGGDRGGQIVA 933 (972)
T ss_dssp HHHHHHHSSCCCSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHTTCSEEEEECSSSTTSCCSEEE
T ss_pred HHHHHHHhcCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHhCCEEEEEcCCCCCCCCEEEE
Confidence 99999999875 9999999999999999999999998875 479999999999999899999999 7899987
No 65
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=99.96 E-value=1.9e-29 Score=288.90 Aligned_cols=203 Identities=24% Similarity=0.353 Sum_probs=147.6
Q ss_pred ccEEEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHH-Hhccc--------c-----------------
Q psy1502 339 GKIEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAA-IFRLA--------E----------------- 392 (597)
Q Consensus 339 ~~I~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~L-L~~l~--------~----------------- 392 (597)
..|+++|+++ .+|+||||+|++|+++||+|+||||||||++. |.|+. +
T Consensus 501 ~~L~v~~l~~------~~L~~vsl~i~~Geiv~I~G~nGSGKSTLl~~~L~g~l~~~~g~~~~~~g~~~~~~~~~~~~~~ 574 (842)
T 2vf7_A 501 GWLELNGVTR------NNLDNLDVRFPLGVMTSVTGVSGSGKSTLVSQALVDALAAHFGQPVNPDPEDDEDPADHTAGSA 574 (842)
T ss_dssp CEEEEEEEEE------TTEEEEEEEEESSSEEEEECCTTSSHHHHCCCCCHHHHHHHTTC-----------------CCC
T ss_pred ceEEEEeeee------cccccceEEEcCCCEEEEEcCCCcCHHHHHHHHHHHHHHHHhcCCCCccccccccccccccccc
Confidence 3599999986 26999999999999999999999999999996 66542 1
Q ss_pred -CCc-------eEEEcceeCCCCCh----------HHHhcCcEEEe---------CC----------------------C
Q psy1502 393 -VEG-------VIKIDDIDTEDVPL----------SKLRSNISIIP---------QD----------------------P 423 (597)
Q Consensus 393 -~~G-------~I~idg~di~~~~~----------~~lr~~I~~V~---------Q~----------------------~ 423 (597)
.+| .|.+||.++..-+. +.+|+.++++| +. -
T Consensus 575 ~~~G~~~~~~~~i~vdq~~i~~~~rs~~at~~~~~~~ir~~fa~~~~~r~~g~~~~~fs~n~~~g~c~~c~g~G~~~~~~ 654 (842)
T 2vf7_A 575 RLGGDLAQITRLVRVDQKPIGRTPRSNMATYTGLFDQVRKLFAATPLAKKRGYNAGRFSFNVKGGRCEHCQGEGWVMVEL 654 (842)
T ss_dssp EEEESGGGCCEEEEECSSCSCSSTTCCHHHHSSTHHHHHHHHHTSHHHHHTTCCGGGGCSSSTTTBCTTTTTCSEEEETT
T ss_pred cccCcccccceEEEECCeeCCCCccccchhhhhHHHHHHHHHhcChHHHhcCCccccccccccccccccccCCCccchhh
Confidence 256 68999988864332 33443333222 21 1
Q ss_pred CCC-------------------------CccHHhhcccCCCCChHHHHHHH----HHhcHHHHHHhcCCCch-hhhCCCC
Q psy1502 424 VLF-------------------------SGTLRKNLDPFEKYPDYVLWTAL----QEVELKDMIMEGAGLNM-TVYEGGT 473 (597)
Q Consensus 424 ~LF-------------------------~gTI~eNI~~~~~~~~e~i~~a~----~~a~l~~fI~~l~GldT-~vge~G~ 473 (597)
.++ ..||.||+.+. -.+..... +.....+.++. -|+.. .++....
T Consensus 655 ~f~~~v~~~c~~c~G~r~~~e~l~v~~~~~si~e~l~lt----v~e~l~~~~~~~~~~~~~~~L~~-~gL~~~~l~~~~~ 729 (842)
T 2vf7_A 655 LFLPSVYAPCPVCHGTRYNAETLEVEYRGKNIADVLALT----VDEAHDFFADESAIFRALDTLRE-VGLGYLRLGQPAT 729 (842)
T ss_dssp CSSSCEEEECTTTTTCCBCTTGGGCCBTTBCHHHHHTCB----HHHHHHHTTTSHHHHHHHHHHHH-TTCTTSBTTCCGG
T ss_pred hcCCccceecccccCcccchhhHhhhhcCCCHHHHHhcc----HHHHHHHhhcchHHHHHHHHHHH-cCCCcccccCCcc
Confidence 111 12555555321 01100000 00112233333 35554 4678888
Q ss_pred CCChhHHHHHHHHHHHccC---CCEEEeecCCCCCCHHHHHHHHHHHHHhc-CCcEEEEeccCchhHhhcCEEEEE----
Q psy1502 474 NFSVGQRQLICLARAIVRN---NVILVLDEATANVDPKTDLLIQRTIRKKF-ADCTVLTIAHRLHTIMDSDKVLVM---- 545 (597)
Q Consensus 474 ~LSGGQrQRIaIARAll~~---p~ILILDEaTSaLD~~te~~I~~~l~~~~-~~~TvI~IaHrlsti~~~D~Iivl---- 545 (597)
.||||||||++|||||+++ |+||||||||++||+.+...+.+.|+++. .+.|+|+|+|+++.+..||+|++|
T Consensus 730 ~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~tVIvisHdl~~i~~aDrii~L~p~~ 809 (842)
T 2vf7_A 730 ELSGGEAQRIKLATELRRSGRGGTVYVLDEPTTGLHPADVERLQRQLVKLVDAGNTVIAVEHKMQVVAASDWVLDIGPGA 809 (842)
T ss_dssp GCCHHHHHHHHHHHTTSSCCSSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHTTCSEEEEECSSS
T ss_pred cCCHHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHhCCEEEEECCCC
Confidence 9999999999999999996 69999999999999999999999998874 589999999999999889999999
Q ss_pred --eCCeEEE
Q psy1502 546 --DSGVAVV 552 (597)
Q Consensus 546 --~~G~Ive 552 (597)
++|+|++
T Consensus 810 g~~~G~Iv~ 818 (842)
T 2vf7_A 810 GEDGGRLVA 818 (842)
T ss_dssp GGGCCSEEE
T ss_pred CCCCCEEEE
Confidence 6999987
No 66
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=99.96 E-value=3.2e-29 Score=288.20 Aligned_cols=198 Identities=21% Similarity=0.325 Sum_probs=143.2
Q ss_pred cEEEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHh-c-c----c---cCCce-------------E
Q psy1502 340 KIEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIF-R-L----A---EVEGV-------------I 397 (597)
Q Consensus 340 ~I~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~-~-l----~---~~~G~-------------I 397 (597)
.++++|++. .+|+||||+|++|+++||+|+||||||||+++|+ + + + +..|. |
T Consensus 647 ~L~v~~l~~------~~Lk~Vsl~I~~GeivaI~G~nGSGKSTLl~~il~g~l~~~l~~~~~~~G~~~~i~G~~~~~~~i 720 (993)
T 2ygr_A 647 QLTVVGARE------HNLRGIDVSFPLGVLTSVTGVSGSGKSTLVNDILAAVLANRLNGARQVPGRHTRVTGLDYLDKLV 720 (993)
T ss_dssp EEEEEEECS------TTCCSEEEEEESSSEEEEECSTTSSHHHHHTTTHHHHHHHHTTCCCCCCCSEEEECCCTTCSEEE
T ss_pred eEEEecCcc------ccccCceEEECCCCEEEEEcCCCCCHHHHHHHHHHHHHHhhhcCCcCCCCceeeecCccccceEE
Confidence 489999862 3799999999999999999999999999999864 2 2 2 12343 5
Q ss_pred EEcceeCCCCC---hH-------HH---------hcCcEEEeCCCCC---------------------C-----------
Q psy1502 398 KIDDIDTEDVP---LS-------KL---------RSNISIIPQDPVL---------------------F----------- 426 (597)
Q Consensus 398 ~idg~di~~~~---~~-------~l---------r~~I~~V~Q~~~L---------------------F----------- 426 (597)
.+|+.++..-. +. .. .+..+|+||...+ |
T Consensus 721 ~idq~pig~~~rs~paty~~~~d~ir~lfa~~p~ar~~gy~~~~fsfn~~~grC~~C~g~G~~~~e~~fl~~v~~~ce~c 800 (993)
T 2ygr_A 721 RIDQSPIGRTPRSNPATYTGVFDKIRTLFAATNEAKVRGYKPGRFSFNVKGGRCEACTGDGTIKIEMNFLPDVYVPCEVC 800 (993)
T ss_dssp CCCCSCSCSSTTCCHHHHHTHHHHHHHHHHTSHHHHTTTCCTTTTCTTSTTTBCTTTTSSSEEEECCTTSCCEEEECTTT
T ss_pred EecCcccccCcccchhhhhhHHHHHHHHhccCHHHHHhcccccccccccccccccccccccceeehhhccccceeeehhc
Confidence 56666653211 11 11 2356888886321 0
Q ss_pred ---------------CccHHhh--------cccCCCCChHHHHHHHHHhcHHHHHHhcCCCch-hhhCCCCCCChhHHHH
Q psy1502 427 ---------------SGTLRKN--------LDPFEKYPDYVLWTALQEVELKDMIMEGAGLNM-TVYEGGTNFSVGQRQL 482 (597)
Q Consensus 427 ---------------~gTI~eN--------I~~~~~~~~e~i~~a~~~a~l~~fI~~l~GldT-~vge~G~~LSGGQrQR 482 (597)
..+|.|| +.+..... ++. ...+.++. -|+.. .++.....||||||||
T Consensus 801 ~G~r~~~e~l~v~~~g~si~dvl~ltv~e~l~~~~~~~--~~~------~~~~~L~~-lgL~~~~l~~~~~~LSGGekQR 871 (993)
T 2ygr_A 801 QGARYNRETLEVHYKGKTVSEVLDMSIEEAAEFFEPIA--GVH------RYLRTLVD-VGLGYVRLGQPAPTLSGGEAQR 871 (993)
T ss_dssp TTCSBCGGGGGCCBTTBCHHHHHSSBHHHHHHHSTTCH--HHH------HHHHHHHH-TTGGGSBTTCCGGGSCHHHHHH
T ss_pred cccccchhhhhhhccCCCHHHHhhccHHHHHHHhhcch--HHH------HHHHHHHH-cCCCcccccCccccCCHHHHHH
Confidence 0122222 22211110 010 11222333 36665 5788889999999999
Q ss_pred HHHHHHHccCC---CEEEeecCCCCCCHHHHHHHHHHHHHhc-CCcEEEEeccCchhHhhcCEEEEE------eCCeEEE
Q psy1502 483 ICLARAIVRNN---VILVLDEATANVDPKTDLLIQRTIRKKF-ADCTVLTIAHRLHTIMDSDKVLVM------DSGVAVV 552 (597)
Q Consensus 483 IaIARAll~~p---~ILILDEaTSaLD~~te~~I~~~l~~~~-~~~TvI~IaHrlsti~~~D~Iivl------~~G~Ive 552 (597)
++|||||+++| +||||||||++||+.+...+.+.|+++. .+.|+|+|+|++..+..||+|++| ++|+|+.
T Consensus 872 v~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~TVIvisHdl~~i~~aDrIivL~p~gg~~~G~Iv~ 951 (993)
T 2ygr_A 872 VKLASELQKRSTGRTVYILDEPTTGLHFDDIRKLLNVINGLVDKGNTVIVIEHNLDVIKTSDWIIDLGPEGGAGGGTVVA 951 (993)
T ss_dssp HHHHHHHSSCCCSSEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHTTCSEEEEEESSSTTSCSEEEE
T ss_pred HHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHhCCEEEEECCCcCCCCCEEEE
Confidence 99999999875 9999999999999999999999998874 489999999999999899999999 6899987
No 67
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.95 E-value=1.7e-28 Score=255.23 Aligned_cols=205 Identities=16% Similarity=0.201 Sum_probs=148.3
Q ss_pred cEEEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhcc-----------------------------
Q psy1502 340 KIEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRL----------------------------- 390 (597)
Q Consensus 340 ~I~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l----------------------------- 390 (597)
.|+++|. .+|. ++++|++++| .++|+||||||||||++.|..+
T Consensus 5 ~L~i~nf-r~~~------~~~~l~~~~g-~~~i~G~NGsGKS~ll~ai~~llg~~~~~s~r~~~~~~li~~g~~~~~~~~ 76 (322)
T 1e69_A 5 KLYLKGF-KSFG------RPSLIGFSDR-VTAIVGPNGSGKSNIIDAIKWVFGEQSKKELRASEKFDMIFAGSENLPPAG 76 (322)
T ss_dssp EEEEESB-TTBC------SCEEEECCSS-EEEEECCTTTCSTHHHHHHHHTSCC----------CCTTBCCCBTTBCCCS
T ss_pred EEEEeCc-eeec------CCeEEecCCC-cEEEECCCCCcHHHHHHHHHHHhCCCchhhcccccHHHhhccCccCCCCCc
Confidence 4677772 2342 2578899999 9999999999999999999832
Q ss_pred ---------------------cc-CCceEEEcceeCCCCChHHHhcCcEEEeCCCCCC-CccHHhhcccCCC----C---
Q psy1502 391 ---------------------AE-VEGVIKIDDIDTEDVPLSKLRSNISIIPQDPVLF-SGTLRKNLDPFEK----Y--- 440 (597)
Q Consensus 391 ---------------------~~-~~G~I~idg~di~~~~~~~lr~~I~~V~Q~~~LF-~gTI~eNI~~~~~----~--- 440 (597)
+. .+|.+.+||.+++..+...+...+++.||+..++ .|++.+|+..... +
T Consensus 77 ~~~v~~~f~~~~~~~~i~r~~~~~~~~~~~ing~~~~~~~~~~~~~~~g~~~~~~~lv~qg~i~~~~~~~p~~rr~~ld~ 156 (322)
T 1e69_A 77 SAYVELVFEENGEEITVARELKRTGENTYYLNGSPVRLKDIRDRFAGTGLGVDFYSIVGQGQIDRIVNASPEELRLESSK 156 (322)
T ss_dssp EEEEEEEEESSSCEEEEEEEEETTSCEEEEETTEEECHHHHHHHTTTSSTTTTCCSEEEHHHHHHHHTC-----------
T ss_pred eEEEEEEEEeCCeEEEEEEEEEcCCceEEEECCcCccHHHHHHHHHHcCCChhheeeEehhhHHHHHhccHHHHHHHHHH
Confidence 12 2478899999986656677777899999998766 8999999865321 0
Q ss_pred ---------ChHHHHHHHHHh------------cHHH-HHHhc-CCCchhhhC------CCCCCChhHHHHHHHHHHHc-
Q psy1502 441 ---------PDYVLWTALQEV------------ELKD-MIMEG-AGLNMTVYE------GGTNFSVGQRQLICLARAIV- 490 (597)
Q Consensus 441 ---------~~e~i~~a~~~a------------~l~~-fI~~l-~GldT~vge------~G~~LSGGQrQRIaIARAll- 490 (597)
+.+++.+.+... .+.+ ....+ .|+++.++. ....||||||||++|||||.
T Consensus 157 ~~~~~~~~~~y~rv~e~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~~~~~lS~Gq~q~v~ia~~l~~ 236 (322)
T 1e69_A 157 HPTSLVPRGSYQRVNESFNRFISLLFFGGEGRLNIVSEAKSILDAGFEISIRKPGRRDQKLSLLSGGEKALVGLALLFAL 236 (322)
T ss_dssp ----------CHHHHHHHHHHHHHHHTSCEEEC--------------CCEEECTTSCCCBGGGSCHHHHHHHHHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHhcCCceEEEEeeccccccccCCeEEEEecCccccCchhhCCHHHHHHHHHHHHHHH
Confidence 011122221110 0000 00113 466665432 34689999999999999996
Q ss_pred ---cCCCEEEeecCCCCCCHHHHHHHHHHHHHhcCCcEEEEeccCchhHhhcCEE--EEEeCCeEEE
Q psy1502 491 ---RNNVILVLDEATANVDPKTDLLIQRTIRKKFADCTVLTIAHRLHTIMDSDKV--LVMDSGVAVV 552 (597)
Q Consensus 491 ---~~p~ILILDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrlsti~~~D~I--ivl~~G~Ive 552 (597)
++|++||||||||+||+.+...+.+.|.++.+++|+|+|||+.+.+..||++ ++|++|...-
T Consensus 237 ~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~vi~~tH~~~~~~~~d~~~~v~~~~g~s~~ 303 (322)
T 1e69_A 237 MEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENSKHTQFIVITHNKIVMEAADLLHGVTMVNGVSAI 303 (322)
T ss_dssp TTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHHTTTSEEEEECCCTTGGGGCSEEEEEEESSSCEEE
T ss_pred hccCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEECCHHHHhhCceEEEEEEeCCEEEE
Confidence 7899999999999999999999999999987788999999999888889987 8899986543
No 68
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=99.94 E-value=1e-30 Score=256.86 Aligned_cols=166 Identities=11% Similarity=0.035 Sum_probs=122.8
Q ss_pred ccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccccCCceEEEcceeCCCCCh-HHHhcCcEEEeCCCCCCCc-----
Q psy1502 355 RVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAEVEGVIKIDDIDTEDVPL-SKLRSNISIIPQDPVLFSG----- 428 (597)
Q Consensus 355 ~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~~~~G~I~idg~di~~~~~-~~lr~~I~~V~Q~~~LF~g----- 428 (597)
.-|+||||+|++|+.+||+||||||||||+++|+|++| |+|.+ |+++...+. ..+++.++|++|++.+|..
T Consensus 11 ~~l~~isl~i~~G~~~~lvGpsGsGKSTLl~~L~g~~p--G~i~~-g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 87 (218)
T 1z6g_A 11 SSGLVPRGSMNNIYPLVICGPSGVGKGTLIKKLLNEFP--NYFYF-SVSCTTRKKREKEKEGVDYYFIDKTIFEDKLKNE 87 (218)
T ss_dssp -----------CCCCEEEECSTTSSHHHHHHHHHHHST--TTEEE-CCCEECSCCCSSCCBTTTBEECCHHHHHHHHHTT
T ss_pred ccccCCceecCCCCEEEEECCCCCCHHHHHHHHHhhCC--CcEEE-eecccCCCCCcccccCCeEEECCHHHHHHhhhcc
Confidence 36999999999999999999999999999999999985 99999 887755432 2357889999999877643
Q ss_pred ------cHHhhcccCCCCChHHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHH-----HHHHccCCCEEE
Q psy1502 429 ------TLRKNLDPFEKYPDYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICL-----ARAIVRNNVILV 497 (597)
Q Consensus 429 ------TI~eNI~~~~~~~~e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaI-----ARAll~~p~ILI 497 (597)
++.+| .++ .+++++.++++. +....++ .+|||||+||++| ||+++++|++++
T Consensus 88 ~~l~~~~~~~~-~~g--~~~~~i~~~l~~-----------~~~~il~---~~lsggq~qR~~i~~~~~~~~ll~~~~~~~ 150 (218)
T 1z6g_A 88 DFLEYDNYANN-FYG--TLKSEYDKAKEQ-----------NKICLFE---MNINGVKQLKKSTHIKNALYIFIKPPSTDV 150 (218)
T ss_dssp CEEEEEEETTE-EEE--EEHHHHHHHHHT-----------TCEEEEE---ECHHHHHHHTTCSSCCSCEEEEEECSCHHH
T ss_pred chhhhhhcccc-cCC--CcHHHHHHHHhC-----------CCcEEEE---ecHHHHHHHHHHhcCCCcEEEEEeCcCHHH
Confidence 33333 121 123444444432 2222232 6899999999999 999999999999
Q ss_pred eecCCCCCCHHHHHHHHHHHHHhcCCcEEEEeccCchhHhhcCEEEEEeC
Q psy1502 498 LDEATANVDPKTDLLIQRTIRKKFADCTVLTIAHRLHTIMDSDKVLVMDS 547 (597)
Q Consensus 498 LDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrlsti~~~D~Iivl~~ 547 (597)
|||||+++|.++|..|++.+.+..+++| ++| +..||.|+|+++
T Consensus 151 Lde~~~~~d~~~~~~i~~~l~~~~~~~~---~~h----~~~~d~iiv~~~ 193 (218)
T 1z6g_A 151 LLSRLLTRNTENQEQIQKRMEQLNIELH---EAN----LLNFNLSIINDD 193 (218)
T ss_dssp HHHHHHHTCCCCHHHHHHHHHHHHHHHH---HHT----TSCCSEEEECSS
T ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHHH---hhc----ccCCCEEEECCC
Confidence 9999999999999999999998877777 788 678999999876
No 69
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=99.94 E-value=1.4e-29 Score=246.48 Aligned_cols=159 Identities=13% Similarity=0.160 Sum_probs=101.5
Q ss_pred CccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccccCCceEEEcceeCCCCChHHHhcCcEEEeCCCCCCCccHHhh
Q psy1502 354 PRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAEVEGVIKIDDIDTEDVPLSKLRSNISIIPQDPVLFSGTLRKN 433 (597)
Q Consensus 354 ~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~~~~G~I~idg~di~~~~~~~lr~~I~~V~Q~~~LF~gTI~eN 433 (597)
+++|+|| ++|+++||+||||||||||+++|+|+.|++|+|. +.++.. +...++++|+||||++ +||
T Consensus 13 ~~~l~~i----~~Ge~~~liG~nGsGKSTLl~~l~Gl~p~~G~I~--~~~~~~-~~~~~~~~ig~v~q~~-------~en 78 (208)
T 3b85_A 13 KHYVDAI----DTNTIVFGLGPAGSGKTYLAMAKAVQALQSKQVS--RIILTR-PAVEAGEKLGFLPGTL-------NEK 78 (208)
T ss_dssp HHHHHHH----HHCSEEEEECCTTSSTTHHHHHHHHHHHHTTSCS--EEEEEE-CSCCTTCCCCSSCC------------
T ss_pred HHHHHhc----cCCCEEEEECCCCCCHHHHHHHHhcCCCcCCeee--eEEecC-CchhhhcceEEecCCH-------HHH
Confidence 4589986 8999999999999999999999999933689994 333321 2234578999999997 677
Q ss_pred c-ccCCCCChHHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHHHHHHccCCCEEEeecCCCCCCHHHHHH
Q psy1502 434 L-DPFEKYPDYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATANVDPKTDLL 512 (597)
Q Consensus 434 I-~~~~~~~~e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaIARAll~~p~ILILDEaTSaLD~~te~~ 512 (597)
+ .+.... .+.+........+.+.++. |+ |||||++|||||+.+|++||||||||+ +...
T Consensus 79 l~~~~~~~-~~~~~~~~~~~~~~~~l~~--gl-------------Gq~qrv~lAraL~~~p~lllLDEPts~----~~~~ 138 (208)
T 3b85_A 79 IDPYLRPL-HDALRDMVEPEVIPKLMEA--GI-------------VEVAPLAYMRGRTLNDAFVILDEAQNT----TPAQ 138 (208)
T ss_dssp -CTTTHHH-HHHHTTTSCTTHHHHHHHT--TS-------------EEEEEGGGGTTCCBCSEEEEECSGGGC----CHHH
T ss_pred HHHHHHHH-HHHHHHhccHHHHHHHHHh--CC-------------chHHHHHHHHHHhcCCCEEEEeCCccc----cHHH
Confidence 7 332100 0000000000112222221 22 999999999999999999999999999 8888
Q ss_pred HHHHHHHhcCCcEEEEeccCchhHhhcCEEEEEeCCeE
Q psy1502 513 IQRTIRKKFADCTVLTIAHRLHTIMDSDKVLVMDSGVA 550 (597)
Q Consensus 513 I~~~l~~~~~~~TvI~IaHrlsti~~~D~Iivl~~G~I 550 (597)
+.+.|.++.+++|+| |||+++.+. +++..++|..
T Consensus 139 l~~~l~~l~~g~tii-vtHd~~~~~---~~~~~~~G~~ 172 (208)
T 3b85_A 139 MKMFLTRLGFGSKMV-VTGDITQVD---LPGGQKSGLR 172 (208)
T ss_dssp HHHHHTTBCTTCEEE-EEEC---------------CCH
T ss_pred HHHHHHHhcCCCEEE-EECCHHHHh---CcCCCCCcHH
Confidence 999998874578999 999988654 4556677754
No 70
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=99.93 E-value=5.7e-27 Score=222.61 Aligned_cols=147 Identities=16% Similarity=0.141 Sum_probs=110.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhccccCCceEEEcceeCCCCChHHHhcCcEEEeCCCCCCCccHHhhcccCCCCChHHHHHH
Q psy1502 369 KIGIVGRTGAGKSSLIAAIFRLAEVEGVIKIDDIDTEDVPLSKLRSNISIIPQDPVLFSGTLRKNLDPFEKYPDYVLWTA 448 (597)
Q Consensus 369 ~vaIVG~SGsGKSTL~~LL~~l~~~~G~I~idg~di~~~~~~~lr~~I~~V~Q~~~LF~gTI~eNI~~~~~~~~e~i~~a 448 (597)
+++|+||||||||||+++|+|++. |.++|.+..+......+++++|++|++ |..+|+...-..+
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~----i~~~g~~~~~~~~~~~~~~ig~~~~~~-----~~~~~~~~~~~~~------- 65 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLG----KRAIGFWTEEVRDPETKKRTGFRIITT-----EGKKKIFSSKFFT------- 65 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHG----GGEEEEEEEEEC------CCEEEEEET-----TCCEEEEEETTCC-------
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC----CcCCCEEhhhhccccccceeEEEeecC-----cHHHHHHHhhcCC-------
Confidence 689999999999999999999874 667777654433224578999999987 3445542100000
Q ss_pred HHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHHHHH-----HccCCCEEEeec--CCCCCCHHHHHHHHHHHHHhc
Q psy1502 449 LQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARA-----IVRNNVILVLDE--ATANVDPKTDLLIQRTIRKKF 521 (597)
Q Consensus 449 ~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaIARA-----ll~~p~ILILDE--aTSaLD~~te~~I~~~l~~~~ 521 (597)
.+..++..+.+||||||||++|||| ++.+|++||||| ||++||+.+.+.+.+.+++
T Consensus 66 ---------------~~~~~~~~~~~lSgG~~qr~~la~aa~~~~l~~~p~llilDEigp~~~ld~~~~~~l~~~l~~-- 128 (178)
T 1ye8_A 66 ---------------SKKLVGSYGVNVQYFEELAIPILERAYREAKKDRRKVIIIDEIGKMELFSKKFRDLVRQIMHD-- 128 (178)
T ss_dssp ---------------CSSEETTEEECHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGGGCHHHHHHHHHHHTC--
T ss_pred ---------------ccccccccccCcCHHHHHHHHHHhhccccccccCCCEEEEeCCCCcccCCHHHHHHHHHHHhc--
Confidence 0134677788999999999999996 999999999999 9999999999999999877
Q ss_pred CCcEEEEecc---CchhHhh-cCEEEEEeCCeEEE
Q psy1502 522 ADCTVLTIAH---RLHTIMD-SDKVLVMDSGVAVV 552 (597)
Q Consensus 522 ~~~TvI~IaH---rlsti~~-~D~Iivl~~G~Ive 552 (597)
.+.|+|+++| +...+.. ||+ ++|+|++
T Consensus 129 ~~~~~i~~~H~~h~~~~~~~i~~r----~~~~i~~ 159 (178)
T 1ye8_A 129 PNVNVVATIPIRDVHPLVKEIRRL----PGAVLIE 159 (178)
T ss_dssp TTSEEEEECCSSCCSHHHHHHHTC----TTCEEEE
T ss_pred CCCeEEEEEccCCCchHHHHHHhc----CCcEEEE
Confidence 4677899986 6666654 676 6677777
No 71
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=99.93 E-value=2.8e-27 Score=223.33 Aligned_cols=149 Identities=15% Similarity=0.146 Sum_probs=107.6
Q ss_pred eeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccccCCceEEEcceeCCCCChHHHhcCcEEEeCCCC--CCCccHHhhccc
Q psy1502 359 NLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAEVEGVIKIDDIDTEDVPLSKLRSNISIIPQDPV--LFSGTLRKNLDP 436 (597)
Q Consensus 359 ~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~~~~G~I~idg~di~~~~~~~lr~~I~~V~Q~~~--LF~gTI~eNI~~ 436 (597)
||||++++|+.++|+||||||||||++++.+ |...+ +.+.+| ++++|++. .+.++..
T Consensus 1 ~vsl~i~~gei~~l~G~nGsGKSTl~~~~~~-----~~~~~--------~~d~~~---g~~~~~~~~~~~~~~~~----- 59 (171)
T 4gp7_A 1 SMKLTIPELSLVVLIGSSGSGKSTFAKKHFK-----PTEVI--------SSDFCR---GLMSDDENDQTVTGAAF----- 59 (171)
T ss_dssp CEEEEEESSEEEEEECCTTSCHHHHHHHHSC-----GGGEE--------EHHHHH---HHHCSSTTCGGGHHHHH-----
T ss_pred CccccCCCCEEEEEECCCCCCHHHHHHHHcc-----CCeEE--------ccHHHH---HHhcCcccchhhHHHHH-----
Confidence 6899999999999999999999999999653 22222 222333 67777752 1111111
Q ss_pred CCCCChHHHHHHHHHhcHHHHHHhc-CCCchhhhCCCCCCChhHHHHHHHHHHHccCCCEEEeecCCCCCCHHHH-----
Q psy1502 437 FEKYPDYVLWTALQEVELKDMIMEG-AGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATANVDPKTD----- 510 (597)
Q Consensus 437 ~~~~~~e~i~~a~~~a~l~~fI~~l-~GldT~vge~G~~LSGGQrQRIaIARAll~~p~ILILDEaTSaLD~~te----- 510 (597)
+.+.. .....+ .|+.+.+... ...|||||||++||||+..+|++|+|||||++||+.++
T Consensus 60 ----------~~~~~----~~~~~~~~g~~~~~~~~-~~~s~g~~qrv~iAral~~~p~~lllDEPt~~Ld~~~~~R~~~ 124 (171)
T 4gp7_A 60 ----------DVLHY----IVSKRLQLGKLTVVDAT-NVQESARKPLIEMAKDYHCFPVAVVFNLPEKVCQERNKNRTDR 124 (171)
T ss_dssp ----------HHHHH----HHHHHHHTTCCEEEESC-CCSHHHHHHHHHHHHHTTCEEEEEEECCCHHHHHHHHHTCSSC
T ss_pred ----------HHHHH----HHHHHHhCCCeEEEECC-CCCHHHHHHHHHHHHHcCCcEEEEEEeCCHHHHHHHHhcccCC
Confidence 11110 001123 6777666544 45599999999999999999999999999999999955
Q ss_pred -----------HHHHHHHHHhc-CCcEEEEeccCchhHhhcCEEE
Q psy1502 511 -----------LLIQRTIRKKF-ADCTVLTIAHRLHTIMDSDKVL 543 (597)
Q Consensus 511 -----------~~I~~~l~~~~-~~~TvI~IaHrlsti~~~D~Ii 543 (597)
..+.+.|.++. ++.|+|+|+|+++.+..++++.
T Consensus 125 ~~~~~vi~~~~~~l~~~l~~l~~~g~tvi~vtH~~~~~~~~~~~~ 169 (171)
T 4gp7_A 125 QVEEYVIRKHTQQMKKSIKGLQREGFRYVYILNSPEEVEEVVFER 169 (171)
T ss_dssp CCCHHHHHHHHHHHHHHSTTHHHHTCSEEEEECSHHHHHHEEEEE
T ss_pred CCCHHHHHHHHHHhhhhhhhHHhcCCcEEEEeCCHHHhhhhhhcc
Confidence 67777765543 3789999999999999888754
No 72
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=99.93 E-value=2.8e-28 Score=253.94 Aligned_cols=140 Identities=16% Similarity=0.190 Sum_probs=118.1
Q ss_pred EEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhcccc-CCceEEEcceeCCCCChHHHhcCcEEEeC
Q psy1502 343 FQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAE-VEGVIKIDDIDTEDVPLSKLRSNISIIPQ 421 (597)
Q Consensus 343 f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~~-~~G~I~idg~di~~~~~~~lr~~I~~V~Q 421 (597)
|+||+| | +++++++||.+++|+.++|+||||||||||+++|+|+++ .+|.|.++|.+ ++....+++++++++|
T Consensus 151 ~~~v~f-y---~~~l~~l~~~i~~g~~v~i~G~~GsGKTTll~~l~g~~~~~~g~i~i~~~~--e~~~~~~~~~i~~~~g 224 (330)
T 2pt7_A 151 YNLLDN-K---EQAISAIKDGIAIGKNVIVCGGTGSGKTTYIKSIMEFIPKEERIISIEDTE--EIVFKHHKNYTQLFFG 224 (330)
T ss_dssp TTTSTT-H---HHHHHHHHHHHHHTCCEEEEESTTSCHHHHHHHGGGGSCTTSCEEEEESSC--CCCCSSCSSEEEEECB
T ss_pred cCchhh-H---HHHHhhhhhhccCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcEEEECCee--ccccccchhEEEEEeC
Confidence 777888 7 469999999999999999999999999999999999985 68999999976 3333335566666641
Q ss_pred CCCCCCccHHhhcccCCCCChHHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHHHHHHccCCCEEEeecC
Q psy1502 422 DPVLFSGTLRKNLDPFEKYPDYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEA 501 (597)
Q Consensus 422 ~~~LF~gTI~eNI~~~~~~~~e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaIARAll~~p~ILILDEa 501 (597)
|||+||++|||||.++|++||||||
T Consensus 225 -------------------------------------------------------gg~~~r~~la~aL~~~p~ilildE~ 249 (330)
T 2pt7_A 225 -------------------------------------------------------GNITSADCLKSCLRMRPDRIILGEL 249 (330)
T ss_dssp -------------------------------------------------------TTBCHHHHHHHHTTSCCSEEEECCC
T ss_pred -------------------------------------------------------CChhHHHHHHHHhhhCCCEEEEcCC
Confidence 8999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCc-EEEEeccCchhHhhcCEEEEEeCCeE
Q psy1502 502 TANVDPKTDLLIQRTIRKKFADC-TVLTIAHRLHTIMDSDKVLVMDSGVA 550 (597)
Q Consensus 502 TSaLD~~te~~I~~~l~~~~~~~-TvI~IaHrlsti~~~D~Iivl~~G~I 550 (597)
|+. + +.+.|+.+..+. |+|+++|++++...||||++|++|+.
T Consensus 250 ~~~---e----~~~~l~~~~~g~~tvi~t~H~~~~~~~~dri~~l~~g~~ 292 (330)
T 2pt7_A 250 RSS---E----AYDFYNVLCSGHKGTLTTLHAGSSEEAFIRLANMSSSNS 292 (330)
T ss_dssp CST---H----HHHHHHHHHTTCCCEEEEEECSSHHHHHHHHHHHHHTSG
T ss_pred ChH---H----HHHHHHHHhcCCCEEEEEEcccHHHHHhhhheehhcCCc
Confidence 992 2 455666665555 79999999998899999999998863
No 73
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=99.93 E-value=7e-26 Score=239.19 Aligned_cols=82 Identities=21% Similarity=0.258 Sum_probs=75.6
Q ss_pred CCCCCChhHHHHHHHHHHHc------cCCCEEEeecCCCCCCHHHHHHHHHHHHHhc-CCcEEEEeccCchhHhhcCEEE
Q psy1502 471 GGTNFSVGQRQLICLARAIV------RNNVILVLDEATANVDPKTDLLIQRTIRKKF-ADCTVLTIAHRLHTIMDSDKVL 543 (597)
Q Consensus 471 ~G~~LSGGQrQRIaIARAll------~~p~ILILDEaTSaLD~~te~~I~~~l~~~~-~~~TvI~IaHrlsti~~~D~Ii 543 (597)
....||||||||++|||||+ .+|++|||||||++||+.+...+.+.|.++. .++|+|+|||+++.+..||+|+
T Consensus 276 ~~~~LSgGe~qr~~la~al~~~~~~~~~p~~lllDEpt~~LD~~~~~~~~~~l~~l~~~g~tvi~itH~~~~~~~~d~~~ 355 (365)
T 3qf7_A 276 PARGLSGGERALISISLAMSLAEVASGRLDAFFIDEGFSSLDTENKEKIASVLKELERLNKVIVFITHDREFSEAFDRKL 355 (365)
T ss_dssp EGGGSCHHHHHHHHHHHHHHHHHHTTTTCCEEEEESCCTTSCHHHHHHHHHHHHGGGGSSSEEEEEESCHHHHTTCSCEE
T ss_pred CchhCCHHHHHHHHHHHHHHhhhcccCCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEecchHHHHhCCEEE
Confidence 44579999999999999999 7999999999999999999999999998875 4789999999999988899999
Q ss_pred EEeCCeEEE
Q psy1502 544 VMDSGVAVV 552 (597)
Q Consensus 544 vl~~G~Ive 552 (597)
+|++|+|++
T Consensus 356 ~l~~G~i~~ 364 (365)
T 3qf7_A 356 RITGGVVVN 364 (365)
T ss_dssp EEETTEEC-
T ss_pred EEECCEEEe
Confidence 999999974
No 74
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=99.90 E-value=1.6e-26 Score=246.18 Aligned_cols=167 Identities=16% Similarity=0.182 Sum_probs=131.7
Q ss_pred CccceeeeEEEcCCc--------------------EEEEEcCCCCCHHHHHHHHhccc-cCCceEEEcceeCCCCChHHH
Q psy1502 354 PRVIKNLNITIHPKE--------------------KIGIVGRTGAGKSSLIAAIFRLA-EVEGVIKIDDIDTEDVPLSKL 412 (597)
Q Consensus 354 ~~vL~~isl~I~~G~--------------------~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I~idg~di~~~~~~~l 412 (597)
+.+|+||||++++|+ .+||+||||||||||+|+|+|++ |++|+|.++|.++.
T Consensus 36 ~~~l~~is~~i~~Ge~~~~~~~i~~~L~~~~~~~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t------- 108 (413)
T 1tq4_A 36 QEILNLIELRMRAGNIQLTNSAISDALKEIDSSVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVT------- 108 (413)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHCCEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC-----------
T ss_pred HHHhhhccceecCCCCcccchhhhhhhhhcccCCeEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecc-------
Confidence 358999999999999 99999999999999999999987 57899999998763
Q ss_pred hcCcEEEeCCCCCCCccHHhhcccCCCCChHHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChh--HHHHHHHHHHHc
Q psy1502 413 RSNISIIPQDPVLFSGTLRKNLDPFEKYPDYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVG--QRQLICLARAIV 490 (597)
Q Consensus 413 r~~I~~V~Q~~~LF~gTI~eNI~~~~~~~~e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGG--QrQRIaIARAll 490 (597)
| .++++|++...+.|+.||+.++.. ++.+.+.++..++ ..++..+ . |||| ||||++|||||.
T Consensus 109 ~--~~~v~q~~~~~~ltv~D~~g~~~~--~~~~~~~L~~~~L-------~~~~~~~----~-lS~G~~~kqrv~la~aL~ 172 (413)
T 1tq4_A 109 M--ERHPYKHPNIPNVVFWDLPGIGST--NFPPDTYLEKMKF-------YEYDFFI----I-ISATRFKKNDIDIAKAIS 172 (413)
T ss_dssp C--CCEEEECSSCTTEEEEECCCGGGS--SCCHHHHHHHTTG-------GGCSEEE----E-EESSCCCHHHHHHHHHHH
T ss_pred e--eEEeccccccCCeeehHhhcccch--HHHHHHHHHHcCC-------CccCCeE----E-eCCCCccHHHHHHHHHHH
Confidence 2 278999986557899999877532 2334455554443 2233333 2 9999 999999999999
Q ss_pred c----------CCCEEEeecCCCCCCHHHHHHHHHHHHHhc----------CCcEEEEeccCchh--Hhh-cCEEE
Q psy1502 491 R----------NNVILVLDEATANVDPKTDLLIQRTIRKKF----------ADCTVLTIAHRLHT--IMD-SDKVL 543 (597)
Q Consensus 491 ~----------~p~ILILDEaTSaLD~~te~~I~~~l~~~~----------~~~TvI~IaHrlst--i~~-~D~Ii 543 (597)
+ +|++++|||||++||+.+...+.+.|+++. ...++++-||.++- +.. ||+|.
T Consensus 173 ~~~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~~~~l~~~g~~~~~iiliSsh~l~~~~~e~L~d~I~ 248 (413)
T 1tq4_A 173 MMKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFRENGIAEPPIFLLSNKNVCHYDFPVLMDKLI 248 (413)
T ss_dssp HTTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHHTTCSSCCEEECCTTCTTSTTHHHHHHHHH
T ss_pred hcCCCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCCcEEEEecCcCCccCHHHHHHHHH
Confidence 9 999999999999999999999988887763 13578888999886 654 78775
No 75
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=99.90 E-value=4.2e-26 Score=245.64 Aligned_cols=184 Identities=16% Similarity=0.166 Sum_probs=147.9
Q ss_pred ccEEEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc-cCCceEEEcce---eCCCCC-----h
Q psy1502 339 GKIEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EVEGVIKIDDI---DTEDVP-----L 409 (597)
Q Consensus 339 ~~I~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I~idg~---di~~~~-----~ 409 (597)
..++++||++.|+.+..+|+++ |+|++|++++|+||||||||||+++|+|++ ++.|.|.++|. ++.++. .
T Consensus 130 ~~l~~~~v~~~~~tg~~vld~v-l~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~~~~G~i~~~G~r~~ev~~~~~~~~~~ 208 (438)
T 2dpy_A 130 NPLQRTPIEHVLDTGVRAINAL-LTVGRGQRMGLFAGSGVGKSVLLGMMARYTRADVIVVGLIGERGREVKDFIENILGP 208 (438)
T ss_dssp CTTTSCCCCSBCCCSCHHHHHH-SCCBTTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEESCCHHHHHHHHHTTTHH
T ss_pred CceEEeccceecCCCceEEeee-EEecCCCEEEEECCCCCCHHHHHHHHhcccCCCeEEEEEeceecHHHHHHHHhhccc
Confidence 4589999999997556799999 999999999999999999999999999988 46899999998 555432 3
Q ss_pred HHHhcCcEEEeCC-CCC-CCccHHhhcccCCCCChHHHHHHHHHhcHHHHHHhcCCCch-hhhCCCCCCChhHHHHHHHH
Q psy1502 410 SKLRSNISIIPQD-PVL-FSGTLRKNLDPFEKYPDYVLWTALQEVELKDMIMEGAGLNM-TVYEGGTNFSVGQRQLICLA 486 (597)
Q Consensus 410 ~~lr~~I~~V~Q~-~~L-F~gTI~eNI~~~~~~~~e~i~~a~~~a~l~~fI~~l~GldT-~vge~G~~LSGGQrQRIaIA 486 (597)
..+++.|+||+|+ ..+ ..-|+.+|+.+. .+... . .+.+. .+-+...+||||| ||++||
T Consensus 209 ~~l~r~i~~v~q~~~~~~~~~~v~~~~~~~-----ae~~~------------~-~~~~v~~~ld~l~~lS~g~-qrvslA 269 (438)
T 2dpy_A 209 DGRARSVVIAAPADVSPLLRMQGAAYATRI-----AEDFR------------D-RGQHVLLIMDSLTRYAMAQ-REIALA 269 (438)
T ss_dssp HHHHTEEEEEECTTSCHHHHHHHHHHHHHH-----HHHHH------------T-TTCEEEEEEECHHHHHHHH-HHHHHH
T ss_pred cccCceEEEEECCCCCHHHHHHHHHHHHHH-----HHHHH------------h-CCCCHHHHHHhHHHHHHHH-HHHHHH
Confidence 5688899999995 333 356888887541 11111 0 11110 0113356899999 999999
Q ss_pred HHHccCCCEEEeecCCCCCCHHHHHHHHHHHHHhcC-----Cc-----EEEEeccCchhHhhcCEEEEEeCCeEEE
Q psy1502 487 RAIVRNNVILVLDEATANVDPKTDLLIQRTIRKKFA-----DC-----TVLTIAHRLHTIMDSDKVLVMDSGVAVV 552 (597)
Q Consensus 487 RAll~~p~ILILDEaTSaLD~~te~~I~~~l~~~~~-----~~-----TvI~IaHrlsti~~~D~Iivl~~G~Ive 552 (597)
+++|++ |++||+.+...+.+.+.++.+ ++ |++++||+++ ...||++++|.+|+|+.
T Consensus 270 ---l~~p~~------t~glD~~~~~~l~~ll~r~~~~~~~~GsiT~~~tVlv~tHdl~-~~iad~v~~l~dG~Ivl 335 (438)
T 2dpy_A 270 ---IGEPPA------TKGYPPSVFAKLPALVERAGNGIHGGGSITAFYTVLTEGDDQQ-DPIADSARAILDGHIVL 335 (438)
T ss_dssp ---TTCCCC------SSSCCTTHHHHHHHHHTTCSCCSTTSCEEEEEEEEECSSSCSC-CHHHHHHHHHSSEEEEE
T ss_pred ---hCCCcc------cccCCHHHHHHHHHHHHHHHhccCCCCcccceeEEEEeCCCcc-chhhceEEEEeCcEEEE
Confidence 999998 999999999999999998865 43 9999999999 77899999999999997
No 76
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=99.89 E-value=3.9e-27 Score=237.31 Aligned_cols=182 Identities=20% Similarity=0.124 Sum_probs=147.7
Q ss_pred EEEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhcccc-C-CceEEEcceeCCCCChHHHhcCcEE
Q psy1502 341 IEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAE-V-EGVIKIDDIDTEDVPLSKLRSNISI 418 (597)
Q Consensus 341 I~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~~-~-~G~I~idg~di~~~~~~~lr~~I~~ 418 (597)
++++|++|. ++|+|+| +++|+.++|+||||||||||+++|+|+++ + +|+|.++|.++..+. +..+++
T Consensus 6 ~~l~~l~~~-----~vl~~i~--i~~g~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~~~g~~i~~~~----~~~~~~ 74 (261)
T 2eyu_A 6 PEFKKLGLP-----DKVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYVF----KHKKSI 74 (261)
T ss_dssp CCGGGSSCC-----THHHHGG--GCSSEEEEEECSTTCSHHHHHHHHHHHHHHHCCCEEEEEESSCCSCC----CCSSSE
T ss_pred CChHHCCCH-----HHHHHHh--hCCCCEEEEECCCCccHHHHHHHHHHhCCCCCCCEEEEcCCcceeec----CCccee
Confidence 456677652 5999999 99999999999999999999999999984 5 899999999886543 456788
Q ss_pred EeC-----CCCCCCccHHhhcccCCCC-------ChHHHHHHHHHhc-----------------HHHHH-----------
Q psy1502 419 IPQ-----DPVLFSGTLRKNLDPFEKY-------PDYVLWTALQEVE-----------------LKDMI----------- 458 (597)
Q Consensus 419 V~Q-----~~~LF~gTI~eNI~~~~~~-------~~e~i~~a~~~a~-----------------l~~fI----------- 458 (597)
|+| ++..|..+|+.++...+++ +.+.++.+++.+. ++..+
T Consensus 75 v~q~~~gl~~~~l~~~la~aL~~~p~illlDEp~D~~~~~~~l~~~~~g~~vl~t~H~~~~~~~~dri~~l~~~~~~~~~ 154 (261)
T 2eyu_A 75 VNQREVGEDTKSFADALRAALREDPDVIFVGEMRDLETVETALRAAETGHLVFGTLHTNTAIDTIHRIVDIFPLNQQEQV 154 (261)
T ss_dssp EEEEEBTTTBSCHHHHHHHHHHHCCSEEEESCCCSHHHHHHHHHHHHTTCEEEEEECCSSHHHHHHHHHHTSCGGGHHHH
T ss_pred eeHHHhCCCHHHHHHHHHHHHhhCCCEEEeCCCCCHHHHHHHHHHHccCCEEEEEeCcchHHHHHHHHhhhcCccccchH
Confidence 998 6667778888888644333 6666666665542 11111
Q ss_pred -Hhc-CCCchhhhCCCCCCChhHHHHHHHHHHHccCCCE--EEeecCCCCCCHHH---------HHHHHHHHHHhcCCcE
Q psy1502 459 -MEG-AGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVI--LVLDEATANVDPKT---------DLLIQRTIRKKFADCT 525 (597)
Q Consensus 459 -~~l-~GldT~vge~G~~LSGGQrQRIaIARAll~~p~I--LILDEaTSaLD~~t---------e~~I~~~l~~~~~~~T 525 (597)
..+ +++++.|++++.++||| ||++|||+++.+|+| +|+||+||++|... +..++++++...+++|
T Consensus 155 ~~~l~~~l~~vi~qrl~~~~~G--~R~~i~e~l~~~~~i~~li~d~~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~g~t 232 (261)
T 2eyu_A 155 RIVLSFILQGIISQRLLPKIGG--GRVLAYGLLIPNTAIRNLIRENKLQQVYSLMQSGQAETGMQTMNQTLYKLYKQGLI 232 (261)
T ss_dssp HHHHHHHEEEEEEEEEECCSSS--SSEEEEEEECCCHHHHHHHHHTCHHHHHHHHHHSCSCTTEECHHHHHHHHHHTTSS
T ss_pred HHHHHHHhhEEEEEEeEecCCC--CEEEEEEEecCCHHHHHHHHcCCHHHHHHHHHHhHHhcCCccHHHHHHHHHHcCCC
Confidence 123 67999999999999999 999999999999999 99999999999873 5578999999999999
Q ss_pred EEEeccCchh
Q psy1502 526 VLTIAHRLHT 535 (597)
Q Consensus 526 vI~IaHrlst 535 (597)
.+.++||++.
T Consensus 233 ~~~~a~r~~~ 242 (261)
T 2eyu_A 233 TLEDAMEASP 242 (261)
T ss_dssp CHHHHHHHCS
T ss_pred CHHHHHHHhC
Confidence 9999999874
No 77
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=99.88 E-value=1.9e-24 Score=218.77 Aligned_cols=150 Identities=12% Similarity=0.144 Sum_probs=96.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhccc-cCCceEEEcceeCCCCChHHHhcCcEEEeCCCCCCCc-cHHhhcccCCCCChHHHH
Q psy1502 369 KIGIVGRTGAGKSSLIAAIFRLA-EVEGVIKIDDIDTEDVPLSKLRSNISIIPQDPVLFSG-TLRKNLDPFEKYPDYVLW 446 (597)
Q Consensus 369 ~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I~idg~di~~~~~~~lr~~I~~V~Q~~~LF~g-TI~eNI~~~~~~~~e~i~ 446 (597)
.+|||||||||||||+++|+|+. |++|+|.++|.++.. ...++.++|++|++.++.. |+.||+.++.....++.+
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~---~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~~~~ 80 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPK---TVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINNENCW 80 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHC------------CCC---CCSCCEEEESCC----CCEEEEECCCC--CCSBCTTCS
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCc---ceeeeeeEEEeecCCCcCCceEEechhhhhhcccHHHH
Confidence 58999999999999999999987 578999999998743 3346789999999998865 999999886533322222
Q ss_pred HHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHHHHHHccCCCEEEeecCCCCCCHHHHHHHHHHHHHhcCCcEE
Q psy1502 447 TALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATANVDPKTDLLIQRTIRKKFADCTV 526 (597)
Q Consensus 447 ~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaIARAll~~p~ILILDEaTSaLD~~te~~I~~~l~~~~~~~Tv 526 (597)
+.+......++...+ . ..||||||||++||||+.. +++|||||++||+.. ..+++.|.+ ..++
T Consensus 81 ~~i~~~~~~~~~~~~------~----~~LS~G~~qrv~iaRal~~---lllldep~~gL~~lD-~~~l~~L~~---~~~v 143 (270)
T 3sop_A 81 EPIEKYINEQYEKFL------K----EEVNIARKKRIPDTRVHCC---LYFISPTGHSLRPLD-LEFMKHLSK---VVNI 143 (270)
T ss_dssp HHHHHHHHHHHHHHH------H----HHSCTTCCSSCCCCSCCEE---EEEECCCSSSCCHHH-HHHHHHHHT---TSEE
T ss_pred HHHHHHHHHHHHhhh------H----HhcCcccchhhhhheeeee---eEEEecCCCcCCHHH-HHHHHHHHh---cCcE
Confidence 222222222332221 1 2699999999999999875 999999999999986 344445543 4899
Q ss_pred EEeccCchhHhh
Q psy1502 527 LTIAHRLHTIMD 538 (597)
Q Consensus 527 I~IaHrlsti~~ 538 (597)
|+|.|+..++..
T Consensus 144 I~Vi~K~D~lt~ 155 (270)
T 3sop_A 144 IPVIAKADTMTL 155 (270)
T ss_dssp EEEETTGGGSCH
T ss_pred EEEEeccccCCH
Confidence 999999887754
No 78
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=99.88 E-value=1.1e-25 Score=238.14 Aligned_cols=173 Identities=19% Similarity=0.103 Sum_probs=145.2
Q ss_pred ccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhcccc-C-CceEEEcceeCCCCChHHHhcCcEEEeC-----CCCCCC
Q psy1502 355 RVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAE-V-EGVIKIDDIDTEDVPLSKLRSNISIIPQ-----DPVLFS 427 (597)
Q Consensus 355 ~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~~-~-~G~I~idg~di~~~~~~~lr~~I~~V~Q-----~~~LF~ 427 (597)
++|++++ +++|+.++|+||||||||||+++|+|+++ + +|+|.++|.++. + .+++.+++|+| ++..|+
T Consensus 126 ~~l~~l~--~~~g~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~~e~~~e-~---~~~~~~~~v~Q~~~g~~~~~~~ 199 (372)
T 2ewv_A 126 DKVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIE-Y---VFKHKKSIVNQREVGEDTKSFA 199 (372)
T ss_dssp SSHHHHT--TSSSEEEEEECSSSSSHHHHHHHHHHHHHHHSCCEEEEEESSCC-S---CCCCSSSEEEEEEBTTTBSCSH
T ss_pred HHHHHHh--hcCCCEEEEECCCCCCHHHHHHHHHhhcCcCCCcEEEEecccHh-h---hhccCceEEEeeecCCCHHHHH
Confidence 4677776 89999999999999999999999999985 4 799988776664 3 36788999999 899999
Q ss_pred ccHHhhcccCCCC-------ChHHHHHHHHHhcH-----------------HHHH-----------H-hc-CCCchhhhC
Q psy1502 428 GTLRKNLDPFEKY-------PDYVLWTALQEVEL-----------------KDMI-----------M-EG-AGLNMTVYE 470 (597)
Q Consensus 428 gTI~eNI~~~~~~-------~~e~i~~a~~~a~l-----------------~~fI-----------~-~l-~GldT~vge 470 (597)
++|++||+..++. +.+.++.+++.++. +..+ . .+ +++++.|++
T Consensus 200 ~~l~~~L~~~pd~illdE~~d~e~~~~~l~~~~~g~~vi~t~H~~~~~~~~~rl~~l~~~~~~~~~~~~l~~~l~~vv~q 279 (372)
T 2ewv_A 200 DALRAALREDPDVIFVGEMRDLETVETALRAAETGHLVFGTLHTNTAIDTIHRIVDIFPLNQQEQVRIVLSFILQGIISQ 279 (372)
T ss_dssp HHHHHHTTSCCSEEEESCCCSHHHHHHHHHHHTTTCEEEECCCCCSHHHHHHHHHHTSCTTSHHHHHHHHHHSCCEEEEE
T ss_pred HHHHHHhhhCcCEEEECCCCCHHHHHHHHHHHhcCCEEEEEECcchHHHHHHHHHHhcCcccchhHHHHHHHhhhEEEEE
Confidence 9999999875554 67777777777652 1111 1 13 689999999
Q ss_pred CCCCCChhHHHHHHHHHHHccCCCE--EEeecCCCCCCHH----H-----HHHHHHHHHHhcCCcEEEEeccCchh
Q psy1502 471 GGTNFSVGQRQLICLARAIVRNNVI--LVLDEATANVDPK----T-----DLLIQRTIRKKFADCTVLTIAHRLHT 535 (597)
Q Consensus 471 ~G~~LSGGQrQRIaIARAll~~p~I--LILDEaTSaLD~~----t-----e~~I~~~l~~~~~~~TvI~IaHrlst 535 (597)
++.++||| ||++|||+++.+|+| +|+||+||+||.. + +..++++++...+++|.+.+|||++.
T Consensus 280 rl~~~~~G--~R~~i~e~l~~~~~i~~li~d~~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~g~t~~~~a~r~~~ 353 (372)
T 2ewv_A 280 RLLPKIGG--GRVLAYELLIPNTAIRNLIRENKLQQVYSLMQSGQAETGMQTMNQTLYKLYKQGLITLEDAMEASP 353 (372)
T ss_dssp EEEECSSS--SEEEEEEECCCCSHHHHHHHHTCHHHHHHHCC-------CBCSHHHHHHTTTTSSSCTTTTTSSCS
T ss_pred EeEecCCC--CEEEEEEEeeCCHHHHHHHHcCCHHHHHHHHHHhHHhcCCccHHHHHHHHHHCCCCCHHHHHHHcC
Confidence 99999999 999999999999999 9999999999975 3 45689999999999999999999984
No 79
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=99.87 E-value=3.4e-25 Score=228.62 Aligned_cols=176 Identities=18% Similarity=0.249 Sum_probs=129.2
Q ss_pred cccEEEEeeEEEeCCCCccceeeeEE-----------------------EcCCcEEEEEcCCCCCHHHHHHHHhcccc-C
Q psy1502 338 LGKIEFQNTNVRYLSGPRVIKNLNIT-----------------------IHPKEKIGIVGRTGAGKSSLIAAIFRLAE-V 393 (597)
Q Consensus 338 ~~~I~f~nVsf~Y~~~~~vL~~isl~-----------------------I~~G~~vaIVG~SGsGKSTL~~LL~~l~~-~ 393 (597)
.+.|+++||++.|. |+++++++. +++|+.+||+||||||||||+++|.|+++ .
T Consensus 41 ~~~i~~~~v~~~y~---p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~ivgI~G~sGsGKSTL~~~L~gll~~~ 117 (312)
T 3aez_A 41 GEQIDLLEVEEVYL---PLARLIHLQVAARQRLFAATAEFLGEPQQNPDRPVPFIIGVAGSVAVGKSTTARVLQALLARW 117 (312)
T ss_dssp TCCCCHHHHHHTHH---HHHHHHHHHHHHHHHHHHHHHHHTTCCCCCSSSCCCEEEEEECCTTSCHHHHHHHHHHHHHTS
T ss_pred CCeEEeeehhhhhh---hHHHHHHHHHhhhhHHHHHHHHhhcccccccCCCCCEEEEEECCCCchHHHHHHHHHhhcccc
Confidence 45699999999993 577777765 89999999999999999999999999874 4
Q ss_pred CceEEEcceeCCCCChHHHhcCcEEEeCCCCCCCccHHhhcccCC--CCChHHHHHHHHHhcHHHHHHhc-CCCc-hhhh
Q psy1502 394 EGVIKIDDIDTEDVPLSKLRSNISIIPQDPVLFSGTLRKNLDPFE--KYPDYVLWTALQEVELKDMIMEG-AGLN-MTVY 469 (597)
Q Consensus 394 ~G~I~idg~di~~~~~~~lr~~I~~V~Q~~~LF~gTI~eNI~~~~--~~~~e~i~~a~~~a~l~~fI~~l-~Gld-T~vg 469 (597)
.|. .++++|+||+++|+.|++||+.+.. ...+.. ....+.++++.+ .|+. ..+
T Consensus 118 ~G~-----------------~~v~~v~qd~~~~~~t~~e~~~~~~~~g~~~~~-----d~~~~~~~L~~l~~~~~~~~~- 174 (312)
T 3aez_A 118 DHH-----------------PRVDLVTTDGFLYPNAELQRRNLMHRKGFPESY-----NRRALMRFVTSVKSGSDYACA- 174 (312)
T ss_dssp TTC-----------------CCEEEEEGGGGBCCHHHHHHTTCTTCTTSGGGB-----CHHHHHHHHHHHHTTCSCEEE-
T ss_pred CCC-----------------CeEEEEecCccCCcccHHHHHHHHHhcCCChHH-----HHHHHHHHHHHhCCCcccCCc-
Confidence 453 5799999999999999999997532 121110 011223444444 4543 333
Q ss_pred CCCCCCChhHHHHHHHHHHHccCCCEEEeecCCCCCCHHHHHHHHHHHHHhcCCcEEEEeccCchhHh--hcCEEEEEeC
Q psy1502 470 EGGTNFSVGQRQLICLARAIVRNNVILVLDEATANVDPKTDLLIQRTIRKKFADCTVLTIAHRLHTIM--DSDKVLVMDS 547 (597)
Q Consensus 470 e~G~~LSGGQrQRIaIARAll~~p~ILILDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrlsti~--~~D~Iivl~~ 547 (597)
..|||||+||+++|||++.+|+|||||||++.+|+.. ..+.+.. + .+|+|.|..+... .++|.+.+.+
T Consensus 175 ---~~lS~G~~qRv~~a~al~~~p~ilIlDep~~~~d~~~-----~~l~~~~-D-~~I~V~a~~~~~~~R~i~R~~~~rd 244 (312)
T 3aez_A 175 ---PVYSHLHYDIIPGAEQVVRHPDILILEGLNVLQTGPT-----LMVSDLF-D-FSLYVDARIEDIEQWYVSRFLAMRT 244 (312)
T ss_dssp ---EEEETTTTEEEEEEEEEECSCSEEEEECTTTTCCCSS-----CCGGGGC-S-EEEEEEECHHHHHHHHHHHHHHHTT
T ss_pred ---ccCChhhhhhhhhHHHhccCCCEEEECCccccCCcch-----HHHHHhc-C-cEEEEECCHHHHHHHHHHHHHHHHh
Confidence 4799999999999999999999999999999998622 1233333 3 4577788776642 3667666655
Q ss_pred Ce
Q psy1502 548 GV 549 (597)
Q Consensus 548 G~ 549 (597)
|+
T Consensus 245 ~~ 246 (312)
T 3aez_A 245 TA 246 (312)
T ss_dssp TG
T ss_pred cc
Confidence 54
No 80
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=99.87 E-value=5e-25 Score=207.50 Aligned_cols=110 Identities=17% Similarity=0.227 Sum_probs=87.2
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcccc-C---CceEEEcceeCCCCC---hHHHh-cCcE----EEeCCCCCCCccHHhhcc
Q psy1502 368 EKIGIVGRTGAGKSSLIAAIFRLAE-V---EGVIKIDDIDTEDVP---LSKLR-SNIS----IIPQDPVLFSGTLRKNLD 435 (597)
Q Consensus 368 ~~vaIVG~SGsGKSTL~~LL~~l~~-~---~G~I~idg~di~~~~---~~~lr-~~I~----~V~Q~~~LF~gTI~eNI~ 435 (597)
++++|||+||||||||+++|+|+|+ . .|.|.+||.++.+++ .++|| ++++ +++|++++| +++
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~~g~~~G~I~~dg~~i~~~~~~~~d~~r~~~ig~~~~~~~~~~~~~---i~~--- 76 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRERGLRVAVVKRHAHGDFEIDKEGKDSWKIYNSGADVVIASPVKLAF---IRR--- 76 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHHTTCCEEEEEC------------CHHHHHHHHTCEEEEECSSEEEE---EEE---
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhhcCCceEEEEEcCcccccCCccchhHHHHHhcCCceEEECCCcEEE---Eec---
Confidence 6899999999999999999999985 4 699999999998887 77888 5788 899999988 322
Q ss_pred cCCCCChHHHHHHHHHhcHHHHHHh-cCCCchhhhCCCCCCChhHHHHHHHHHHHccCCCEE
Q psy1502 436 PFEKYPDYVLWTALQEVELKDMIME-GAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVIL 496 (597)
Q Consensus 436 ~~~~~~~e~i~~a~~~a~l~~fI~~-l~GldT~vge~G~~LSGGQrQRIaIARAll~~p~IL 496 (597)
.+++. .++++++++. +.||||.|+|+ |||||||||+||||++++|+|.
T Consensus 77 -----~~~~~-----~a~l~~~i~~~l~g~dt~i~Eg---lSgGq~qri~lARall~~p~i~ 125 (171)
T 2f1r_A 77 -----VSEEE-----GNDLDWIYERYLSDYDLVITEG---FSKAGKDRIVVVKKPEEVEHFR 125 (171)
T ss_dssp -----CCHHH-----HTCHHHHHHHHTTTCSEEEEES---CGGGCCCEEEECSSGGGGGGGC
T ss_pred -----CChhh-----hhCHHHHHHhhCCCCCEEEECC---cCCCCCcEEEEEecccCCCccC
Confidence 11222 7899999998 67999999995 9999999999999999999874
No 81
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=99.87 E-value=2.8e-22 Score=229.69 Aligned_cols=91 Identities=22% Similarity=0.317 Sum_probs=82.0
Q ss_pred CCCchh-hhCCCCCCChhHHHHHHHHHHHccCC--CEEEeecCCCCCCHHHHHHHHHHHHHhcC-CcEEEEeccCchhHh
Q psy1502 462 AGLNMT-VYEGGTNFSVGQRQLICLARAIVRNN--VILVLDEATANVDPKTDLLIQRTIRKKFA-DCTVLTIAHRLHTIM 537 (597)
Q Consensus 462 ~GldT~-vge~G~~LSGGQrQRIaIARAll~~p--~ILILDEaTSaLD~~te~~I~~~l~~~~~-~~TvI~IaHrlsti~ 537 (597)
-|++.. ++..-..|||||||||+|||||..+| .+|||||||++||+..-..+.+.|+++.. +.|+|+|+||+..+.
T Consensus 366 vGL~~l~l~r~~~tLSGGe~QRV~LA~aL~~~p~~~llILDEPT~~Ld~~~~~~L~~~l~~L~~~G~TVIvVeHdl~~l~ 445 (842)
T 2vf7_A 366 LGLGYLGLDRSTPTLSPGELQRLRLATQLYSNLFGVVYVLDEPSAGLHPADTEALLSALENLKRGGNSLFVVEHDLDVIR 445 (842)
T ss_dssp TTCTTSBTTCBGGGSCHHHHHHHHHHHHTTTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHTTTCEEEEECCCHHHHT
T ss_pred CCCCcCCccCCcCcCCHHHHHHHHHHHHHhhCCCCeEEEeeCccccCCHHHHHHHHHHHHHHHHcCCEEEEEcCCHHHHH
Confidence 466643 57777899999999999999999999 49999999999999999999999888754 789999999999999
Q ss_pred hcCEEEEE------eCCeEEE
Q psy1502 538 DSDKVLVM------DSGVAVV 552 (597)
Q Consensus 538 ~~D~Iivl------~~G~Ive 552 (597)
.||+|++| ++|+++.
T Consensus 446 ~aD~ii~lgpgaG~~~G~iv~ 466 (842)
T 2vf7_A 446 RADWLVDVGPEAGEKGGEILY 466 (842)
T ss_dssp TCSEEEEECSSSGGGCCSEEE
T ss_pred hCCEEEEeCCCcccCCCEEEE
Confidence 99999999 7899987
No 82
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=99.87 E-value=2.1e-24 Score=206.77 Aligned_cols=168 Identities=14% Similarity=0.108 Sum_probs=130.2
Q ss_pred CcEEEEEcCCCCCHHHHHHHHhccccCCceEEEcceeCCCCChHHHhcCcEEEeCCCCCCCccHHhhcccCCCCChHHHH
Q psy1502 367 KEKIGIVGRTGAGKSSLIAAIFRLAEVEGVIKIDDIDTEDVPLSKLRSNISIIPQDPVLFSGTLRKNLDPFEKYPDYVLW 446 (597)
Q Consensus 367 G~~vaIVG~SGsGKSTL~~LL~~l~~~~G~I~idg~di~~~~~~~lr~~I~~V~Q~~~LF~gTI~eNI~~~~~~~~e~i~ 446 (597)
|++++|+||||||||||+++|+|+++++| |.+||.+..++. .++++++|++|+. +++ ++|+.... ...+
T Consensus 1 G~~i~i~G~nG~GKTTll~~l~g~~~~~G-i~~~g~~~~~~~--~~~~~ig~~~~~~---~g~-~~~l~~~~-~~~~--- 69 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTLIHKASEVLKSSG-VPVDGFYTEEVR--QGGRRIGFDVVTL---SGT-RGPLSRVG-LEPP--- 69 (189)
T ss_dssp CCCEEEESCCSSCHHHHHHHHHHHHHHTT-CCCEEEECCEEE--TTSSEEEEEEEET---TSC-EEEEEECC-CCCC---
T ss_pred CCEEEEECCCCChHHHHHHHHHhhcccCC-EEEcCEecchhH--hhhceEEEEEEec---ccc-eehhhccc-ccCC---
Confidence 78999999999999999999999887779 999999986554 5789999999996 554 45654211 0000
Q ss_pred HHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHH-HHHH---HHccCCCEEEeec--CCCCCCHHHHHHHHHHHHHh
Q psy1502 447 TALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLI-CLAR---AIVRNNVILVLDE--ATANVDPKTDLLIQRTIRKK 520 (597)
Q Consensus 447 ~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRI-aIAR---All~~p~ILILDE--aTSaLD~~te~~I~~~l~~~ 520 (597)
....+..+|+.|..+|||||+++ +++| |+.++|++||||| ||..+|.+.-..+.+.+++
T Consensus 70 --------------~~~~~~~v~~~~~~ls~~er~~~~~l~~~a~A~~~~~dvlilDE~g~~~~~~~~~~~~l~~~l~~- 134 (189)
T 2i3b_A 70 --------------PGKRECRVGQYVVDLTSFEQLALPVLRNADCSSGPGQRVCVIDEIGKMELFSQLFIQAVRQTLST- 134 (189)
T ss_dssp --------------SSSCCEESSSSEECHHHHHTTTTTTTCCCCCCCSSCCCCEEECCCSTTTTTCSHHHHHHHHHHHC-
T ss_pred --------------ccccccccceEEEcchHHHHHHHHHHhhhhHhhccCCCEEEEeCCCccccccHHHHHHHHHHHhC-
Confidence 01234478999999999999999 6666 7899999999999 8888999887777777764
Q ss_pred cCCcEEE----EeccCchhHhhcCEEEEEeCCeEEE----ecCchhHhhHh
Q psy1502 521 FADCTVL----TIAHRLHTIMDSDKVLVMDSGVAVV----SSFGFFFSKDL 563 (597)
Q Consensus 521 ~~~~TvI----~IaHrlsti~~~D~Iivl~~G~Ive----~~~g~y~~l~~ 563 (597)
..|+| .|+||.+ ...+|+|..+++|+|++ +++..|.++++
T Consensus 135 --~~~~ilgti~vsh~~~-~~~vd~i~~~~~~~i~~~~~~nr~~~~~~i~~ 182 (189)
T 2i3b_A 135 --PGTIILGTIPVPKGKP-LALVEEIRNRKDVKVFNVTKENRNHLLPDIVT 182 (189)
T ss_dssp --SSCCEEEECCCCCSSC-CTTHHHHHTTCCSEEEECCSSSGGGHHHHHHH
T ss_pred --CCcEEEEEeecCCCCc-hHHHHHHeecCCcEEEEeChHhHHHHHHHHHH
Confidence 34555 3449986 56789999999999998 55566666654
No 83
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=99.86 E-value=5.1e-24 Score=207.18 Aligned_cols=175 Identities=10% Similarity=0.040 Sum_probs=108.6
Q ss_pred CccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccccCCceEEEcceeCCCCChHHHhcCcEEEeCCCCCCC-ccHHh
Q psy1502 354 PRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAEVEGVIKIDDIDTEDVPLSKLRSNISIIPQDPVLFS-GTLRK 432 (597)
Q Consensus 354 ~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~~~~G~I~idg~di~~~~~~~lr~~I~~V~Q~~~LF~-gTI~e 432 (597)
.++++| .+|++|+.+||+||||||||||+++|+|+++ .|.+++.....-.....++.++|++|++.+|. .|+.+
T Consensus 9 ~~~~~~--~~i~~Gei~~l~GpnGsGKSTLl~~l~gl~~---~i~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~ 83 (207)
T 1znw_A 9 KPTARG--QPAAVGRVVVLSGPSAVGKSTVVRCLRERIP---NLHFSVSATTRAPRPGEVDGVDYHFIDPTRFQQLIDQG 83 (207)
T ss_dssp ------------CCCEEEEECSTTSSHHHHHHHHHHHST---TCEECCCEESSCCCTTCCBTTTBEECCHHHHHHHHHTT
T ss_pred CcCCCC--CCCCCCCEEEEECCCCCCHHHHHHHHHhhCC---ceEEcccccccCCcccccCCCeeEecCHHHHHHHHhcC
Confidence 468888 7999999999999999999999999999985 34443311111111223678999999998886 46777
Q ss_pred hcccC----C-----CCChHHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHHHH---HHccCCCEEEeec
Q psy1502 433 NLDPF----E-----KYPDYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLAR---AIVRNNVILVLDE 500 (597)
Q Consensus 433 NI~~~----~-----~~~~e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaIAR---All~~p~ILILDE 500 (597)
|+... . ..+.+++.+.++.+ .+-.+ ...+.|.+.++-..++ ||+.+|++++|||
T Consensus 84 ~l~~~~~~~~n~~~~g~~~~~~~~~~~~~-----------~~~~~---~l~~~gl~~~~~~~~~~lS~l~~~p~~~~LDe 149 (207)
T 1znw_A 84 ELLEWAEIHGGLHRSGTLAQPVRAAAATG-----------VPVLI---EVDLAGARAIKKTMPEAVTVFLAPPSWQDLQA 149 (207)
T ss_dssp CEEEEEEEGGGTEEEEEEHHHHHHHHHHT-----------CCEEE---ECCHHHHHHHHHHCTTSEEEEEECSCHHHHHH
T ss_pred CceeehhhcCchhhcCCcHHHHHHHHHcC-----------CeEEE---EeCHHHHHHHHHhcCCcEEEEEECCCHHHHHH
Confidence 76321 1 12233333332221 00000 0112222222222222 8999999999999
Q ss_pred CCCCC----CHHHHHHHHHHHHHhc--CCcEEEEeccCchhHhh-cCEEEEEeC
Q psy1502 501 ATANV----DPKTDLLIQRTIRKKF--ADCTVLTIAHRLHTIMD-SDKVLVMDS 547 (597)
Q Consensus 501 aTSaL----D~~te~~I~~~l~~~~--~~~TvI~IaHrlsti~~-~D~Iivl~~ 547 (597)
||+++ |+.+...+.+.+.++. .+.|+|+|+|+++.+.. ||+|++|..
T Consensus 150 p~~~l~~~~d~~~~~~l~~~l~~l~~~~g~tvi~vtHdl~~~~~~~d~i~~l~~ 203 (207)
T 1znw_A 150 RLIGRGTETADVIQRRLDTARIELAAQGDFDKVVVNRRLESACAELVSLLVGTA 203 (207)
T ss_dssp HHHTTSCSCHHHHHHHHHHHHHHHHGGGGSSEEEECSSHHHHHHHHHHHHC---
T ss_pred HHHhcCCCCHHHHHHHHHHHHHHHhhhccCcEEEECCCHHHHHHHHHHHHHhcc
Confidence 99998 7778889998888774 36899999999999864 999999853
No 84
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=99.85 E-value=4.2e-23 Score=211.99 Aligned_cols=173 Identities=18% Similarity=0.165 Sum_probs=125.5
Q ss_pred eeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc-cCCceEEEcceeCCCCC----hHHH--hcCcEEEeCCCC-CCC-c
Q psy1502 358 KNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EVEGVIKIDDIDTEDVP----LSKL--RSNISIIPQDPV-LFS-G 428 (597)
Q Consensus 358 ~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I~idg~di~~~~----~~~l--r~~I~~V~Q~~~-LF~-g 428 (597)
+++||++++|+.++|||||||||||+++.|+|++ +.+|+|.++|.|+.... +..| |..|+||+|++. ++. .
T Consensus 91 ~~l~~~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~g~V~l~g~d~~r~~a~~ql~~~~~~~~i~~v~q~~~~~~~~~ 170 (302)
T 3b9q_A 91 TELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAAT 170 (302)
T ss_dssp CSCCCCSSSCEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCC--CCCHHH
T ss_pred cccccccCCCcEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeecccchhHHHHHHHHHHhcCceEEEecCCccCHHH
Confidence 4578899999999999999999999999999987 57899999999986543 2334 458999999987 665 5
Q ss_pred cHHhhcccCC--CCChHHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHHHHHHccCCC--EEEeecCCCC
Q psy1502 429 TLRKNLDPFE--KYPDYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNV--ILVLDEATAN 504 (597)
Q Consensus 429 TI~eNI~~~~--~~~~e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaIARAll~~p~--ILILDEaTSa 504 (597)
|++||+.+.. ..+ .. .++. .|+.......-..|| |||++||||+..+|+ +|+|| ||++
T Consensus 171 ~v~e~l~~~~~~~~d-~~---lldt----------~gl~~~~~~~~~eLS---kqr~~iaral~~~P~e~lLvLD-ptsg 232 (302)
T 3b9q_A 171 VLSKAVKRGKEEGYD-VV---LCDT----------SGRLHTNYSLMEELI---ACKKAVGKIVSGAPNEILLVLD-GNTG 232 (302)
T ss_dssp HHHHHHHHHHHTTCS-EE---EECC----------CCCSSCCHHHHHHHH---HHHHHHHTTSTTCCSEEEEEEE-GGGG
T ss_pred HHHHHHHHHHHcCCc-ch---HHhc----------CCCCcchhHHHHHHH---HHHHHHHHhhccCCCeeEEEEe-CCCC
Confidence 8999986421 111 00 0111 122111111112378 999999999999999 99999 9999
Q ss_pred CCHHHHHHHHHHHHHhcCCcEEEEecc---------CchhHh-hcCEEEEEeCCeEEE
Q psy1502 505 VDPKTDLLIQRTIRKKFADCTVLTIAH---------RLHTIM-DSDKVLVMDSGVAVV 552 (597)
Q Consensus 505 LD~~te~~I~~~l~~~~~~~TvI~IaH---------rlsti~-~~D~Iivl~~G~Ive 552 (597)
||+.+.. +.+.+. .+.|+|++|| .++.+. ..+.|.++..|+.++
T Consensus 233 lD~~~~~---~~~~~~-~g~t~iiiThlD~~~~~g~~l~~~~~~~~pi~~i~~Ge~~~ 286 (302)
T 3b9q_A 233 LNMLPQA---REFNEV-VGITGLILTKLDGSARGGCVVSVVEELGIPVKFIGVGEAVE 286 (302)
T ss_dssp GGGHHHH---HHHHHH-TCCCEEEEECCSSCSCTHHHHHHHHHHCCCEEEEECSSSGG
T ss_pred cCHHHHH---HHHHHh-cCCCEEEEeCCCCCCccChheehHHHHCCCEEEEeCCCChh
Confidence 9998653 234322 3789999999 555554 368999999997654
No 85
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=99.85 E-value=2e-25 Score=215.69 Aligned_cols=158 Identities=15% Similarity=0.134 Sum_probs=123.7
Q ss_pred EcCCcEEEEEcCCCCCHHHHHHHHhcccc--------------CCceEEEcceeCCCCChHHHhcCcEEEeCCCCCCCcc
Q psy1502 364 IHPKEKIGIVGRTGAGKSSLIAAIFRLAE--------------VEGVIKIDDIDTEDVPLSKLRSNISIIPQDPVLFSGT 429 (597)
Q Consensus 364 I~~G~~vaIVG~SGsGKSTL~~LL~~l~~--------------~~G~I~idg~di~~~~~~~lr~~I~~V~Q~~~LF~gT 429 (597)
+++|+.++||||||||||||+++|+|+++ ..|+ +||.++..++.+.+++.+ +|++++|++|
T Consensus 1 m~~g~~i~lvGpsGaGKSTLl~~L~~~~~~~~~~~v~~ttr~~~~g~--~~g~~~~~~~~~~~~~~i---~~~~~l~~~~ 75 (198)
T 1lvg_A 1 MAGPRPVVLSGPSGAGKSTLLKKLFQEHSSIFGFSVSHTTRNPRPGE--EDGKDYYFVTREMMQRDI---AAGDFIEHAE 75 (198)
T ss_dssp ----CCEEEECCTTSSHHHHHHHHHHHHTTTEEECCCEECSCCCTTC--CBTTTBEECCHHHHHHHH---HHTCEEEEEE
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHhhCchhceeeeeeeccCCCCcc--cCCceEEEccHHHHHHHH---HcCCCEeeee
Confidence 36899999999999999999999999874 4687 699999999999999886 7999999999
Q ss_pred HHhhcccCCCCChHHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHHHH-HHccCCCEEEeecCCCCCCHH
Q psy1502 430 LRKNLDPFEKYPDYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLAR-AIVRNNVILVLDEATANVDPK 508 (597)
Q Consensus 430 I~eNI~~~~~~~~e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaIAR-All~~p~ILILDEaTSaLD~~ 508 (597)
+++|+ ++ .++++++++++.+...-+-..++|+++.... ++ .|| +++++|++++|||+|+++|.+
T Consensus 76 ~~~n~-~g--~~~~~i~~~~~~~~~~~~~~~~~g~~~~~~~-----------~~-~~~~~~l~~p~~~ilde~~~~~d~~ 140 (198)
T 1lvg_A 76 FSGNL-YG--TSKEAVRAVQAMNRICVLDVDLQGVRSIKKT-----------DL-CPIYIFVQPPSLDVLEQRLRLRNTE 140 (198)
T ss_dssp ETTEE-EE--EEHHHHHHHHHTTCEEEEECCHHHHHHHTTS-----------SC-CCEEEEEECSCHHHHHHHHHHHTCS
T ss_pred ecCcc-CC--CCHHHHHHHHHcCCcEEEECCHHHHHHHHhc-----------CC-CcEEEEEeCCCHHHHHHHHHhcCCC
Confidence 99998 54 3678888888754221110012566655321 22 677 899999999999999999999
Q ss_pred HHHHHHHHHHHhcCCcEEEEeccCchhHhhcCEEEEEeC
Q psy1502 509 TDLLIQRTIRKKFADCTVLTIAHRLHTIMDSDKVLVMDS 547 (597)
Q Consensus 509 te~~I~~~l~~~~~~~TvI~IaHrlsti~~~D~Iivl~~ 547 (597)
+|..|++.|.+..++ +.++| ++ ..||+|+|+++
T Consensus 141 ~e~~i~~~l~~~~~~---~~~a~--~~-~~~D~iivnd~ 173 (198)
T 1lvg_A 141 TEESLAKRLAAARTD---MESSK--EP-GLFDLVIINDD 173 (198)
T ss_dssp CHHHHHHHHHHHHHH---TTGGG--ST-TTCSEEEECSS
T ss_pred CHHHHHHHHHHHHHH---HHHhh--cc-CCceEEEECCC
Confidence 999999999887554 46788 55 88999999885
No 86
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=99.85 E-value=2.8e-21 Score=202.57 Aligned_cols=74 Identities=20% Similarity=0.211 Sum_probs=69.3
Q ss_pred CCChhHHHHHHHHHHHc---------cCCCEEEeecCCCCCCHHHHHHHHHHHHHhcCCcEEEEeccCchhHhhcCEEEE
Q psy1502 474 NFSVGQRQLICLARAIV---------RNNVILVLDEATANVDPKTDLLIQRTIRKKFADCTVLTIAHRLHTIMDSDKVLV 544 (597)
Q Consensus 474 ~LSGGQrQRIaIARAll---------~~p~ILILDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrlsti~~~D~Iiv 544 (597)
.|||||+||++|||+|+ .+|||||||||||+||+.....+.+.|.++. .|+|++|| ++. .||++++
T Consensus 265 ~lS~Gqqq~l~lA~~La~~~l~~~~~~~p~iLLLDEp~s~LD~~~~~~l~~~l~~~~--qt~i~~th-~~~--~~~~i~~ 339 (359)
T 2o5v_A 265 YASRGEGRTVALALRRAELELLREKFGEDPVLLLDDFTAELDPHRRQYLLDLAASVP--QAIVTGTE-LAP--GAALTLR 339 (359)
T ss_dssp HCCHHHHHHHHHHHHHHHHHHHHHHHSSCCEEEECCGGGCCCHHHHHHHHHHHHHSS--EEEEEESS-CCT--TCSEEEE
T ss_pred hCCHHHHHHHHHHHHHHHhhhhhhccCCCCEEEEeCccccCCHHHHHHHHHHHHhcC--cEEEEEEe-ccc--cCCEEEE
Confidence 59999999999999999 8999999999999999999999999998873 89999999 554 8999999
Q ss_pred EeCCeEEE
Q psy1502 545 MDSGVAVV 552 (597)
Q Consensus 545 l~~G~Ive 552 (597)
|++|+|++
T Consensus 340 l~~G~i~~ 347 (359)
T 2o5v_A 340 AQAGRFTP 347 (359)
T ss_dssp EETTEEEE
T ss_pred EECCEEEe
Confidence 99999987
No 87
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=99.83 E-value=4.6e-22 Score=208.18 Aligned_cols=173 Identities=18% Similarity=0.165 Sum_probs=127.0
Q ss_pred eeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc-cCCceEEEcceeCCCCC----hHHH--hcCcEEEeCCCC-CCC-c
Q psy1502 358 KNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EVEGVIKIDDIDTEDVP----LSKL--RSNISIIPQDPV-LFS-G 428 (597)
Q Consensus 358 ~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I~idg~di~~~~----~~~l--r~~I~~V~Q~~~-LF~-g 428 (597)
..+||++++|+.++|||||||||||+++.|+|++ +.+|+|.++|.|+.... +..| |..|+||+|++. ++. .
T Consensus 148 ~~l~l~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~G~V~l~g~D~~r~~a~eql~~~~~r~~i~~v~q~~~~~~p~~ 227 (359)
T 2og2_A 148 TELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAAT 227 (359)
T ss_dssp CSCCCCSSSSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCSSSSCCHHH
T ss_pred CCcceecCCCeEEEEEcCCCChHHHHHHHHHhhccccCCEEEEecccccccchhHHHHHHHHhcCeEEEEecccccChhh
Confidence 3578899999999999999999999999999987 47899999999986542 2334 568999999987 664 6
Q ss_pred cHHhhcccCC--CCChHHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHHHHHHccCCC--EEEeecCCCC
Q psy1502 429 TLRKNLDPFE--KYPDYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNV--ILVLDEATAN 504 (597)
Q Consensus 429 TI~eNI~~~~--~~~~e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaIARAll~~p~--ILILDEaTSa 504 (597)
|++||+.+.. ..+ .. .+.. .|+.......-..|| |||++||||+..+|+ +|+|| ||++
T Consensus 228 tv~e~l~~~~~~~~d-~~---lldt----------~Gl~~~~~~~~~eLS---kqr~~iaral~~~P~e~lLvLD-pttg 289 (359)
T 2og2_A 228 VLSKAVKRGKEEGYD-VV---LCDT----------SGRLHTNYSLMEELI---ACKKAVGKIVSGAPNEILLVLD-GNTG 289 (359)
T ss_dssp HHHHHHHHHHHTTCS-EE---EEEC----------CCCSSCCHHHHHHHH---HHHHHHHHHSTTCCSEEEEEEE-GGGG
T ss_pred hHHHHHHHHHhCCCH-HH---HHHh----------cCCChhhhhHHHHHH---HHHHHHHHHHhcCCCceEEEEc-CCCC
Confidence 8999986421 111 00 0111 122111111112378 999999999999999 99999 9999
Q ss_pred CCHHHHHHHHHHHHHhcCCcEEEEecc---------CchhHh-hcCEEEEEeCCeEEE
Q psy1502 505 VDPKTDLLIQRTIRKKFADCTVLTIAH---------RLHTIM-DSDKVLVMDSGVAVV 552 (597)
Q Consensus 505 LD~~te~~I~~~l~~~~~~~TvI~IaH---------rlsti~-~~D~Iivl~~G~Ive 552 (597)
+|+.+.. +.+.+. .+.|+|++|| .++.+. .++.|..+..|+.++
T Consensus 290 lD~~~~~---~~~~~~-~g~t~iiiThlD~~~~gG~~lsi~~~~~~pI~~ig~Ge~~~ 343 (359)
T 2og2_A 290 LNMLPQA---REFNEV-VGITGLILTKLDGSARGGCVVSVVEELGIPVKFIGVGEAVE 343 (359)
T ss_dssp GGGHHHH---HHHHHH-TCCCEEEEESCTTCSCTHHHHHHHHHHCCCEEEEECSSSGG
T ss_pred CCHHHHH---HHHHHh-cCCeEEEEecCcccccccHHHHHHHHhCCCEEEEeCCCChH
Confidence 9998763 233332 3789999999 455554 468999999997655
No 88
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=99.82 E-value=9.9e-22 Score=205.45 Aligned_cols=185 Identities=19% Similarity=0.224 Sum_probs=141.1
Q ss_pred cEEEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc-cCCceEEEcceeCCCC-------ChHH
Q psy1502 340 KIEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EVEGVIKIDDIDTEDV-------PLSK 411 (597)
Q Consensus 340 ~I~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I~idg~di~~~-------~~~~ 411 (597)
.++.+|+++.|+.+..+|+++ |+|.+||++||+||||||||||+++|+|+. ++.|.|.++|.+.+++ ....
T Consensus 45 ~i~~~~l~~~~~tg~~ald~l-l~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~~~~g~i~~~G~~~~ev~~~i~~~~~~~ 123 (347)
T 2obl_A 45 PLLRQVIDQPFILGVRAIDGL-LTCGIGQRIGIFAGSGVGKSTLLGMICNGASADIIVLALIGERGREVNEFLALLPQST 123 (347)
T ss_dssp STTCCCCCSEECCSCHHHHHH-SCEETTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEESCCHHHHHHHHTTSCHHH
T ss_pred CeeecccceecCCCCEEEEee-eeecCCCEEEEECCCCCCHHHHHHHHhcCCCCCEEEEEEecccHHHHHHHHHhhhhhh
Confidence 478999999997566799999 999999999999999999999999999987 5679999988763221 2223
Q ss_pred HhcCcEEEeCCCCCCCccHHhhcccCCCCChHHHHHHHHHhcHHHHHHhcCCCchhh-hCCCCCCChhHHHHHHHHHHHc
Q psy1502 412 LRSNISIIPQDPVLFSGTLRKNLDPFEKYPDYVLWTALQEVELKDMIMEGAGLNMTV-YEGGTNFSVGQRQLICLARAIV 490 (597)
Q Consensus 412 lr~~I~~V~Q~~~LF~gTI~eNI~~~~~~~~e~i~~a~~~a~l~~fI~~l~GldT~v-ge~G~~LSGGQrQRIaIARAll 490 (597)
+++.+.+++|.. ....+++..+.....+.++... .|.+..+ -+.-.+||+|| ||+++| +
T Consensus 124 ~~~~v~~~~~~~---------------~~~~~r~~~~~~~~~~ae~~~~-~~~~vl~~ld~~~~lS~g~-r~v~la---l 183 (347)
T 2obl_A 124 LSKCVLVVTTSD---------------RPALERMKAAFTATTIAEYFRD-QGKNVLLMMDSVTRYARAA-RDVGLA---S 183 (347)
T ss_dssp HTTEEEEEECTT---------------SCHHHHHHHHHHHHHHHHHHHT-TTCEEEEEEETHHHHHHHH-HHHHHH---T
T ss_pred hhceEEEEECCC---------------CCHHHHHHHHHHHHHHHHHHHh-ccccHHHHHhhHHHHHHHH-HHHHHH---c
Confidence 444556665532 1113444444444455554333 3433211 13456899999 999999 6
Q ss_pred cCCCEEEeecCCCCCCHHHHHHHHHHHHHhc---CCc-----EEEEeccCchhHhhcCEEEEEeCCeEEE
Q psy1502 491 RNNVILVLDEATANVDPKTDLLIQRTIRKKF---ADC-----TVLTIAHRLHTIMDSDKVLVMDSGVAVV 552 (597)
Q Consensus 491 ~~p~ILILDEaTSaLD~~te~~I~~~l~~~~---~~~-----TvI~IaHrlsti~~~D~Iivl~~G~Ive 552 (597)
.+|++ |++||+.....+.+.+++.. ++. |++++||+++ -.-||+++++.+|+|+.
T Consensus 184 ~~p~~------t~Gldp~~~~~l~~ller~~~~~~GsiT~~~tVl~~thdl~-~~i~d~v~~i~dG~Ivl 246 (347)
T 2obl_A 184 GEPDV------RGGFPPSVFSSLPKLLERAGPAPKGSITAIYTVLLESDNVN-DPIGDEVRSILDGHIVL 246 (347)
T ss_dssp TCCCC------BTTBCHHHHHHHHHHHTTCEECSSSEEEEEEEEECCSSCCC-CHHHHHHHHHCSEEEEB
T ss_pred CCCCc------ccCCCHHHHHHHHHHHHHHhCCCCCCeeeEEEEEEeCCCCC-ChhhhheEEeeCcEEEE
Confidence 89988 99999999999999998875 366 9999999999 66799999999999997
No 89
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=99.81 E-value=8.3e-22 Score=218.03 Aligned_cols=170 Identities=13% Similarity=0.053 Sum_probs=120.8
Q ss_pred EeCCCCccceeeeE-EEcCCcEEEEEcCCCCCHHHHHHH--Hhcccc-CCceEEEcceeCCCCChHHHhcCcEEEeCCCC
Q psy1502 349 RYLSGPRVIKNLNI-TIHPKEKIGIVGRTGAGKSSLIAA--IFRLAE-VEGVIKIDDIDTEDVPLSKLRSNISIIPQDPV 424 (597)
Q Consensus 349 ~Y~~~~~vL~~isl-~I~~G~~vaIVG~SGsGKSTL~~L--L~~l~~-~~G~I~idg~di~~~~~~~lr~~I~~V~Q~~~ 424 (597)
+|+.+.++|+|||| .|++|+.++|+||||||||||+++ +.|+.+ .+|.|+++|.+. ..+....++.+|+++|++.
T Consensus 20 ~~~~g~~~Ld~i~~G~i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~~~~g~i~v~g~~~-~~~~~~~~~~~g~~~q~~~ 98 (525)
T 1tf7_A 20 KMRTMIEGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTFEET-PQDIIKNARSFGWDLAKLV 98 (525)
T ss_dssp EECCCCTTHHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSC-HHHHHHHHGGGTCCHHHHH
T ss_pred cccCCchhHHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEeCC-HHHHHHHHHHcCCChHHhh
Confidence 45566789999999 999999999999999999999999 679885 789999999883 2233445678999999975
Q ss_pred CCCccHHhhcccCCCCChHHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHHHHHHccCCCEEEeecCCCC
Q psy1502 425 LFSGTLRKNLDPFEKYPDYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATAN 504 (597)
Q Consensus 425 LF~gTI~eNI~~~~~~~~e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaIARAll~~p~ILILDEaTSa 504 (597)
.. +|+.......+++.+++++..++.++... ....|||| +|++++|||||+.
T Consensus 99 ~~-----~~l~~~~~~~~~~~~~~l~~~~l~~~~~~----------~~~~LS~g-------------~~~~lilDe~t~~ 150 (525)
T 1tf7_A 99 DE-----GKLFILDASPDPEGQEVVGGFDLSALIER----------INYAIQKY-------------RARRVSIDSVTSV 150 (525)
T ss_dssp HT-----TSEEEEECCCCSSCCSCCSSHHHHHHHHH----------HHHHHHHH-------------TCSEEEEECSTTT
T ss_pred cc-----CcEEEEecCcccchhhhhcccCHHHHHHH----------HHHHHHHc-------------CCCEEEECCHHHH
Confidence 32 23321100000111112222233222211 11234555 5789999999985
Q ss_pred -----CCHHHHHHHHHHHHHhc-CCcEEEEeccCchhH---------hh-cCEEEEEeC
Q psy1502 505 -----VDPKTDLLIQRTIRKKF-ADCTVLTIAHRLHTI---------MD-SDKVLVMDS 547 (597)
Q Consensus 505 -----LD~~te~~I~~~l~~~~-~~~TvI~IaHrlsti---------~~-~D~Iivl~~ 547 (597)
||+.....+.+.++.+. .++|+|+|+|+++.+ .. ||+|++|++
T Consensus 151 ~~~~~lD~~~~~~l~~ll~~l~~~g~tvl~itH~~~~~~~~~~~~i~~~laD~vi~L~~ 209 (525)
T 1tf7_A 151 FQQYDASSVVRRELFRLVARLKQIGATTVMTTERIEEYGPIARYGVEEFVSDNVVILRN 209 (525)
T ss_dssp STTTCCHHHHHHHHHHHHHHHHHHTCEEEEEEECSSSSSCSSTTSCHHHHCSEEEEEEE
T ss_pred HHhcCCHHHHHHHHHHHHHHHHHCCCEEEEEecCCCCccccccccceeeeeeEEEEEEE
Confidence 58899888988887764 378999999999984 45 999999998
No 90
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=99.81 E-value=2.1e-20 Score=191.58 Aligned_cols=181 Identities=10% Similarity=0.092 Sum_probs=120.4
Q ss_pred CccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhcccc-CCc-eEEEcceeCCCCChHHHhcCcEEEeCCCCCCCccHH
Q psy1502 354 PRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAE-VEG-VIKIDDIDTEDVPLSKLRSNISIIPQDPVLFSGTLR 431 (597)
Q Consensus 354 ~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~~-~~G-~I~idg~di~~~~~~~lr~~I~~V~Q~~~LF~gTI~ 431 (597)
.++|+++++.+++|+.++|+||+|||||||++.|++... .+| .|.+.+.+ .+...+++++..+.|+..+ +..
T Consensus 22 ~~~Ld~i~~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~~~e---~~~~~~~~r~~~~~~~~~~---~~~ 95 (296)
T 1cr0_A 22 CTGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAMLE---ESVEETAEDLIGLHNRVRL---RQS 95 (296)
T ss_dssp CTTHHHHHCSBCTTCEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEEESS---SCHHHHHHHHHHHHTTCCG---GGC
T ss_pred HHHHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEEeCc---CCHHHHHHHHHHHHcCCCh---hhc
Confidence 358999999999999999999999999999999999874 557 77665443 3556666666655555432 223
Q ss_pred hhcccCCCCChHHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhH-HHHHHHHHHHccCCCEEEeecCCC---C---
Q psy1502 432 KNLDPFEKYPDYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQ-RQLICLARAIVRNNVILVLDEATA---N--- 504 (597)
Q Consensus 432 eNI~~~~~~~~e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQ-rQRIaIARAll~~p~ILILDEaTS---a--- 504 (597)
+|+..+ ..++++..++++ +++ ....-.+.+...++|.+| +||+. |+|+..+|+++|+||||+ +
T Consensus 96 ~~l~~~-~~~~~~~~~~~~-----~~l---~~~~l~i~~~~~~~~~~~l~~~~~-a~~~~~~p~llilDept~~~~~~~~ 165 (296)
T 1cr0_A 96 DSLKRE-IIENGKFDQWFD-----ELF---GNDTFHLYDSFAEAETDRLLAKLA-YMRSGLGCDVIILDHISIVVSASGE 165 (296)
T ss_dssp HHHHHH-HHHHTHHHHHHH-----HHH---SSSCEEEECCCCSCCHHHHHHHHH-HHHHTTCCSEEEEEEEC--------
T ss_pred cccccC-CCCHHHHHHHHH-----HHh---ccCCEEEECCCCCCCHHHHHHHHH-HHHHhcCCCEEEEcCccccCCCCCC
Confidence 344321 112222222211 111 111112333335789999 77777 999999999999999999 4
Q ss_pred CCH-HHHHHHHHHHHHhcC--CcEEEEeccCc--h--------------------hHh-hcCEEEEEeCCeE
Q psy1502 505 VDP-KTDLLIQRTIRKKFA--DCTVLTIAHRL--H--------------------TIM-DSDKVLVMDSGVA 550 (597)
Q Consensus 505 LD~-~te~~I~~~l~~~~~--~~TvI~IaHrl--s--------------------ti~-~~D~Iivl~~G~I 550 (597)
+|. .....+.+.|+++.+ ++|+|+++|.. . .+. .||+|++|++|+.
T Consensus 166 ~d~~~~~~~i~~~L~~la~~~~~~vi~vsh~~r~~~~~~~~~~~~p~l~dl~~s~~i~~~aD~vi~L~~~~~ 237 (296)
T 1cr0_A 166 SDERKMIDNLMTKLKGFAKSTGVVLVVICHLKNPDKGKAHEEGRPVSITDLRGSGALRQLSDTIIALERNQQ 237 (296)
T ss_dssp ---CHHHHHHHHHHHHHHHHHCCEEEEEEECC-----------------CCC---CHHHHCSEEEEEEEC--
T ss_pred CCHHHHHHHHHHHHHHHHHHhCCeEEEEEecCccccccccccCCCCCHHHhcccHHhHhhCcEEEEEecCcc
Confidence 444 455677788877643 78999999995 3 454 6999999998875
No 91
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=99.81 E-value=2.1e-19 Score=187.97 Aligned_cols=75 Identities=19% Similarity=0.226 Sum_probs=67.5
Q ss_pred CCCCChhHHH------HHHHHHHHccCCCEEEeecCCCCCCHHHHHHHHHHHHHhc-CCcEEEEeccCchhHhhcCEEEE
Q psy1502 472 GTNFSVGQRQ------LICLARAIVRNNVILVLDEATANVDPKTDLLIQRTIRKKF-ADCTVLTIAHRLHTIMDSDKVLV 544 (597)
Q Consensus 472 G~~LSGGQrQ------RIaIARAll~~p~ILILDEaTSaLD~~te~~I~~~l~~~~-~~~TvI~IaHrlsti~~~D~Iiv 544 (597)
-..||||||| |+++|||++.+|++|||||||++||+.+...+.+.|.++. .++|+|+|||+......||+|++
T Consensus 246 ~~~lS~G~~~~~~la~~l~~a~~l~~~p~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~vi~~sH~~~~~~~~d~~~~ 325 (339)
T 3qkt_A 246 LTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDEELKDAADHVIR 325 (339)
T ss_dssp GGGSCHHHHHHHHHHHHHHHHHHTTTTTCEEEEECCCTTCCHHHHHHHHHHHHHTGGGSSEEEEEESCGGGGGGCSEEEE
T ss_pred hHHCCHHHHHHHHHHHHHHHHHHhcCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEEChHHHHHhCCEEEE
Confidence 3579999999 6788899999999999999999999999999999998864 36799999999887788999999
Q ss_pred Ee
Q psy1502 545 MD 546 (597)
Q Consensus 545 l~ 546 (597)
|+
T Consensus 326 l~ 327 (339)
T 3qkt_A 326 IS 327 (339)
T ss_dssp EE
T ss_pred EE
Confidence 85
No 92
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=99.80 E-value=1.4e-19 Score=212.52 Aligned_cols=165 Identities=16% Similarity=0.207 Sum_probs=122.3
Q ss_pred ccEEEEe-----eEEEeCCCCccceeeeEEEcC-------CcEEEEEcCCCCCHHHHHHHHhccccCCceEEEcceeCCC
Q psy1502 339 GKIEFQN-----TNVRYLSGPRVIKNLNITIHP-------KEKIGIVGRTGAGKSSLIAAIFRLAEVEGVIKIDDIDTED 406 (597)
Q Consensus 339 ~~I~f~n-----Vsf~Y~~~~~vL~~isl~I~~-------G~~vaIVG~SGsGKSTL~~LL~~l~~~~G~I~idg~di~~ 406 (597)
+.|+++| |++.|+++++|++|++|++++ |+.++|+||||||||||++.+ |+...
T Consensus 749 ~~l~i~~~rHP~l~~~~~~~~~v~ndi~l~~~~~~~~~~~g~i~~ItGpNgsGKSTlLr~i-Gl~~~------------- 814 (1022)
T 2o8b_B 749 PFLELKGSRHPCITKTFFGDDFIPNDILIGCEEEEQENGKAYCVLVTGPNMGGKSTLMRQA-GLLAV------------- 814 (1022)
T ss_dssp CCEEEEEECCCC------CCCCCCEEEEESCCCSCC---CCCEEEEECCTTSSHHHHHHHH-HHHHH-------------
T ss_pred ceEEEEeccccEEEEEecCCceEeeeeeeccccccccCCCCcEEEEECCCCCChHHHHHHH-HHHHH-------------
Confidence 3599999 999996556899999999987 999999999999999999999 98651
Q ss_pred CChHHHhcCcE-EEeCCCCCCCccHHhhcccCCCCChHHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHH
Q psy1502 407 VPLSKLRSNIS-IIPQDPVLFSGTLRKNLDPFEKYPDYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICL 485 (597)
Q Consensus 407 ~~~~~lr~~I~-~V~Q~~~LF~gTI~eNI~~~~~~~~e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaI 485 (597)
..++| ||||++ ..-|+.|||.. . .++.|.+. .|. ..+|+|+++ +++
T Consensus 815 ------~aqiG~~Vpq~~--~~l~v~d~I~~--r------------ig~~d~~~--~~~--------stf~~em~~-~a~ 861 (1022)
T 2o8b_B 815 ------MAQMGCYVPAEV--CRLTPIDRVFT--R------------LGASDRIM--SGE--------STFFVELSE-TAS 861 (1022)
T ss_dssp ------HHTTTCCEESSE--EEECCCSBEEE--E------------CC-------------------CHHHHHHHH-HHH
T ss_pred ------HhheeEEeccCc--CCCCHHHHHHH--H------------cCCHHHHh--hch--------hhhHHHHHH-HHH
Confidence 34666 999997 36678888742 1 11112111 233 346676665 999
Q ss_pred HHHHccCCCEEEeecCCCCCCHHHH-HHHHHHHHHhc-C-CcEEEEeccCchhHhh-cCEEEEEeCCeEE
Q psy1502 486 ARAIVRNNVILVLDEATANVDPKTD-LLIQRTIRKKF-A-DCTVLTIAHRLHTIMD-SDKVLVMDSGVAV 551 (597)
Q Consensus 486 ARAll~~p~ILILDEaTSaLD~~te-~~I~~~l~~~~-~-~~TvI~IaHrlsti~~-~D~Iivl~~G~Iv 551 (597)
||+++.+|+++||||||+++|+... ..+.+.|+.+. + ++|+|++||.++.+.. ||++.|+ +|++.
T Consensus 862 al~la~~~sLlLLDEp~~Gtd~~dg~~~~~~il~~L~~~~g~~vl~~TH~~el~~~~~d~~~v~-~g~~~ 930 (1022)
T 2o8b_B 862 ILMHATAHSLVLVDELGRGTATFDGTAIANAVVKELAETIKCRTLFSTHYHSLVEDYSQNVAVR-LGHMA 930 (1022)
T ss_dssp HHHHCCTTCEEEEECTTTTSCHHHHHHHHHHHHHHHHHTSCCEEEEECCCHHHHHHTSSCSSEE-EEEEE
T ss_pred HHHhCCCCcEEEEECCCCCCChHHHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHHhCCcceee-cCeEE
Confidence 9999999999999999999999874 44566666664 2 7899999999999875 8999887 47776
No 93
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=99.80 E-value=5.1e-20 Score=203.31 Aligned_cols=76 Identities=16% Similarity=0.217 Sum_probs=71.2
Q ss_pred CCC-ChhHHHHHHHHHHHccCC--CEEEeecCCCCCCHHHHHHHHHHHHHhcCCcEEEEeccCchhHhhcCEEEEEeCC
Q psy1502 473 TNF-SVGQRQLICLARAIVRNN--VILVLDEATANVDPKTDLLIQRTIRKKFADCTVLTIAHRLHTIMDSDKVLVMDSG 548 (597)
Q Consensus 473 ~~L-SGGQrQRIaIARAll~~p--~ILILDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrlsti~~~D~Iivl~~G 548 (597)
.+| |||||||++|||||+.+| ++|||||||++||+.+...|.+.|.++.+++|+|+|||++..+..||++++|++|
T Consensus 395 ~~l~SgG~~qrv~la~~l~~~~~~~~lilDEp~~gld~~~~~~i~~~l~~~~~~~~vi~itH~~~~~~~~d~~~~~~~~ 473 (517)
T 4ad8_A 395 SDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLADTRQVLVVTHLAQIAARAHHHYKVEKQ 473 (517)
T ss_dssp SSSSCSSHHHHHHHHHHHHHCCCSSEEEECSCSSSCCTHHHHHHHHHHHHHHHHSEEEEECCCHHHHHHSSEEEEEECC
T ss_pred HhcCCHHHHHHHHHHHHHHhCCCCCEEEEeCCcCCCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhCCEEEEEecc
Confidence 346 999999999999999999 9999999999999999999999999887789999999999999999999999554
No 94
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=99.80 E-value=2.8e-21 Score=192.79 Aligned_cols=165 Identities=14% Similarity=0.150 Sum_probs=103.3
Q ss_pred CCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccccCCceEEEcceeCCCCChHHHhcCcEEEeCCCCCCCccHHh
Q psy1502 353 GPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAEVEGVIKIDDIDTEDVPLSKLRSNISIIPQDPVLFSGTLRK 432 (597)
Q Consensus 353 ~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~~~~G~I~idg~di~~~~~~~lr~~I~~V~Q~~~LF~gTI~e 432 (597)
+.++|+|+||++++|+.+||+||+|||||||+++|.+++ |.+.+| ..++.++|++|+++...-|..+
T Consensus 11 ~~~~l~~isl~i~~g~iigI~G~~GsGKSTl~k~L~~~l---G~~~~~----------~~~~~i~~v~~d~~~~~l~~~~ 77 (245)
T 2jeo_A 11 VDLGTENLYFQSMRPFLIGVSGGTASGKSTVCEKIMELL---GQNEVE----------QRQRKVVILSQDRFYKVLTAEQ 77 (245)
T ss_dssp ------------CCSEEEEEECSTTSSHHHHHHHHHHHH---TGGGSC----------GGGCSEEEEEGGGGBCCCCHHH
T ss_pred CceeecceeccCCCCEEEEEECCCCCCHHHHHHHHHHHh---chhccc----------ccCCceEEEeCCcCccccCHhH
Confidence 457999999999999999999999999999999999976 555554 3578999999997544568999
Q ss_pred hcccC-C--CCChHHHHHHHHHhcHHHHHHhc-CCCchhhhCCCCCCChhHHHHHHHHHHHccCCCEEEeecCCCCCCHH
Q psy1502 433 NLDPF-E--KYPDYVLWTALQEVELKDMIMEG-AGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATANVDPK 508 (597)
Q Consensus 433 NI~~~-~--~~~~e~i~~a~~~a~l~~fI~~l-~GldT~vge~G~~LSGGQrQRIaIARAll~~p~ILILDEaTSaLD~~ 508 (597)
|+.+. . ..++.+-.+ ...+.+.++.+ ++.+..+ ..||+||+||+++ ++++.+|+++|||||....|..
T Consensus 78 ~~~~~~~~~~~~~~~~~~---~~~~~~~L~~l~~~~~~~~----~~ls~g~~~r~~~-~~~~~~~~~lilDg~~~~~~~~ 149 (245)
T 2jeo_A 78 KAKALKGQYNFDHPDAFD---NDLMHRTLKNIVEGKTVEV----PTYDFVTHSRLPE-TTVVYPADVVLFEGILVFYSQE 149 (245)
T ss_dssp HHHHHTTCCCTTSGGGBC---HHHHHHHHHHHHTTCCEEE----CCEETTTTEECSS-CEEECCCSEEEEECTTTTTSHH
T ss_pred hhhhhccCCCCCCccccc---HHHHHHHHHHHHCCCCeec----ccccccccCccCc-eEEecCCCEEEEeCccccccHH
Confidence 87531 1 111111000 00111222223 4444433 5799999999998 6899999999999998887764
Q ss_pred HHHHHHHHHHHhcCCcEEEEeccCchhH-hh-cCEEEEEeCCeE
Q psy1502 509 TDLLIQRTIRKKFADCTVLTIAHRLHTI-MD-SDKVLVMDSGVA 550 (597)
Q Consensus 509 te~~I~~~l~~~~~~~TvI~IaHrlsti-~~-~D~Iivl~~G~I 550 (597)
+.++ .+.|++++||...-+ +. ++.+ ++|+-
T Consensus 150 --------l~~~-~~~~i~v~th~~~~~~r~~~r~~---~~G~~ 181 (245)
T 2jeo_A 150 --------IRDM-FHLRLFVDTDSDVRLSRRVLRDV---RRGRD 181 (245)
T ss_dssp --------HHTT-CSEEEEEECCHHHHHHHHHHHHT---C---C
T ss_pred --------HHHh-cCeEEEEECCHHHHHHHHHHHHH---HcCCC
Confidence 2333 388999999974433 44 3334 66753
No 95
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=99.79 E-value=2e-22 Score=196.00 Aligned_cols=139 Identities=16% Similarity=0.183 Sum_probs=106.8
Q ss_pred EcCCcEEEEEcCCCCCHHHHHHHHhccccCCceEEEcceeCCCCChHHHhcCcEEEeCCCCCCCc---cHHhhccc--CC
Q psy1502 364 IHPKEKIGIVGRTGAGKSSLIAAIFRLAEVEGVIKIDDIDTEDVPLSKLRSNISIIPQDPVLFSG---TLRKNLDP--FE 438 (597)
Q Consensus 364 I~~G~~vaIVG~SGsGKSTL~~LL~~l~~~~G~I~idg~di~~~~~~~lr~~I~~V~Q~~~LF~g---TI~eNI~~--~~ 438 (597)
.++|+.+||+||||||||||+++|.|++++ +++||+||+++++. |+++|+.+ +.
T Consensus 3 ~~~~~~i~i~G~~GsGKSTl~~~l~~~~~~---------------------~i~~v~~d~~~~~~~~~~~~~~~~~~~~~ 61 (211)
T 3asz_A 3 APKPFVIGIAGGTASGKTTLAQALARTLGE---------------------RVALLPMDHYYKDLGHLPLEERLRVNYDH 61 (211)
T ss_dssp --CCEEEEEEESTTSSHHHHHHHHHHHHGG---------------------GEEEEEGGGCBCCCTTSCHHHHHHSCTTS
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHHHhCC---------------------CeEEEecCccccCcccccHHHhcCCCCCC
Confidence 579999999999999999999999998752 68999999999854 56666543 21
Q ss_pred --CCChHHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhH----HHHHHHHHHHccCCCEEEeecCCCC-------C
Q psy1502 439 --KYPDYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQ----RQLICLARAIVRNNVILVLDEATAN-------V 505 (597)
Q Consensus 439 --~~~~e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQ----rQRIaIARAll~~p~ILILDEaTSa-------L 505 (597)
..+.+.+.++++..++.+++ ...+..+|+|| +||+++||+++.+|+++++||||++ |
T Consensus 62 ~~~~~~~~~~~~l~~~~~~~~~----------~~~~~~~s~g~~~~~~~~~~~~~~li~~~~ll~~de~~~~~~d~~i~l 131 (211)
T 3asz_A 62 PDAFDLALYLEHAQALLRGLPV----------EMPVYDFRAYTRSPRRTPVRPAPVVILEGILVLYPKELRDLMDLKVFV 131 (211)
T ss_dssp GGGBCHHHHHHHHHHHHTTCCE----------EECCEETTTTEECSSCEEECCCSEEEEESTTTTSSHHHHTTCSEEEEE
T ss_pred hhhhhHHHHHHHHHHHHcCCCc----------CCCcccCcccCCCCCeEEeCCCcEEEEeehhhccCHHHHHhcCEEEEE
Confidence 23445566666554433221 22345667774 5899999999999999999999999 9
Q ss_pred CHHHHHHHHHHHHHhc--CCcEEEEeccCc
Q psy1502 506 DPKTDLLIQRTIRKKF--ADCTVLTIAHRL 533 (597)
Q Consensus 506 D~~te~~I~~~l~~~~--~~~TvI~IaHrl 533 (597)
|+.++..+.+.+.+.. +++|++.++|+.
T Consensus 132 d~~~~~~~~r~l~r~~~~~g~t~~~~~~~~ 161 (211)
T 3asz_A 132 DADADERFIRRLKRDVLERGRSLEGVVAQY 161 (211)
T ss_dssp ECCHHHHHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred eCCHHHHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 9999999999987753 588999999984
No 96
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=99.79 E-value=1.8e-20 Score=207.41 Aligned_cols=170 Identities=12% Similarity=0.011 Sum_probs=122.3
Q ss_pred EEEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccccCCceEEEcceeCCCCChHHHhcCcEEEe
Q psy1502 341 IEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAEVEGVIKIDDIDTEDVPLSKLRSNISIIP 420 (597)
Q Consensus 341 I~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~~~~G~I~idg~di~~~~~~~lr~~I~~V~ 420 (597)
++.+++++.|+.-..+|. ..+++|+.++|+|++|||||||++.+++..++.|+ +-+.+++
T Consensus 258 ~~~~~l~~g~~~ld~vL~---g~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~~~G~-----------------~vi~~~~ 317 (525)
T 1tf7_A 258 SSNVRVSSGVVRLDEMCG---GGFFKDSIILATGATGTGKTLLVSRFVENACANKE-----------------RAILFAY 317 (525)
T ss_dssp CCCCEECCSCHHHHHHTT---SSEESSCEEEEEECTTSSHHHHHHHHHHHHHTTTC-----------------CEEEEES
T ss_pred cccceeecChHHHHHHhC---CCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHhCCC-----------------CEEEEEE
Confidence 345666665532112333 48999999999999999999999999998765564 1145666
Q ss_pred CCCCCCCccHHhhcccCCCCChHHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHHHHHHccCCCEEEeec
Q psy1502 421 QDPVLFSGTLRKNLDPFEKYPDYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDE 500 (597)
Q Consensus 421 Q~~~LF~gTI~eNI~~~~~~~~e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaIARAll~~p~ILILDE 500 (597)
|++. .++++|.... ..+-+ ++.. .|+..........|||||+||+++||++..+|++||+|
T Consensus 318 ee~~---~~l~~~~~~~-g~~~~------------~~~~--~g~~~~~~~~p~~LS~g~~q~~~~a~~l~~~p~llilD- 378 (525)
T 1tf7_A 318 EESR---AQLLRNAYSW-GMDFE------------EMER--QNLLKIVCAYPESAGLEDHLQIIKSEINDFKPARIAID- 378 (525)
T ss_dssp SSCH---HHHHHHHHTT-SCCHH------------HHHH--TTSEEECCCCGGGSCHHHHHHHHHHHHHTTCCSEEEEE-
T ss_pred eCCH---HHHHHHHHHc-CCCHH------------HHHh--CCCEEEEEeccccCCHHHHHHHHHHHHHhhCCCEEEEc-
Confidence 7652 3455554211 11211 1111 23333344445689999999999999999999999999
Q ss_pred CCCCCCHH-----HHHHHHHHHHHhc-CCcEEEEeccCc----------hhHh-hcCEEEEEeCCe
Q psy1502 501 ATANVDPK-----TDLLIQRTIRKKF-ADCTVLTIAHRL----------HTIM-DSDKVLVMDSGV 549 (597)
Q Consensus 501 aTSaLD~~-----te~~I~~~l~~~~-~~~TvI~IaHrl----------sti~-~~D~Iivl~~G~ 549 (597)
||++||.. ....+.+.++.+. .+.|+|+|+|.. ..+. .||+|++|++|+
T Consensus 379 p~~~Ld~~~~~~~~~~~i~~ll~~l~~~g~tvilvsh~~~~~~~~~~~~~~l~~~~D~vi~L~~ge 444 (525)
T 1tf7_A 379 SLSALARGVSNNAFRQFVIGVTGYAKQEEITGLFTNTSDQFMGAHSITDSHISTITDTIILLQYVE 444 (525)
T ss_dssp CHHHHTSSSCHHHHHHHHHHHHHHHHHTTCEEEEEEECSSSSCCCSSCSSCCTTTCSEEEEEEEEE
T ss_pred ChHHHHhhCChHHHHHHHHHHHHHHHhCCCEEEEEECcccccCcccccCcccceeeeEEEEEEEEE
Confidence 99999998 7777777776653 478999999998 6665 489999999987
No 97
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=99.78 E-value=2.1e-21 Score=205.23 Aligned_cols=145 Identities=11% Similarity=0.146 Sum_probs=106.1
Q ss_pred cceeeeEEEcC--CcEEEEEcCCCCCHHHHHHHHhcccc-CC----ceEEEc----ceeCCCCChHHHhcCcEEEeCCCC
Q psy1502 356 VIKNLNITIHP--KEKIGIVGRTGAGKSSLIAAIFRLAE-VE----GVIKID----DIDTEDVPLSKLRSNISIIPQDPV 424 (597)
Q Consensus 356 vL~~isl~I~~--G~~vaIVG~SGsGKSTL~~LL~~l~~-~~----G~I~id----g~di~~~~~~~lr~~I~~V~Q~~~ 424 (597)
+.+.|+++|++ |+++||+||||||||||+++|+|+++ ++ |+|.++ |.++ .++..++ ++|++++|++.
T Consensus 157 ~~~~v~~~v~~~lg~k~~IvG~nGsGKSTLlk~L~gl~~~~~~~e~G~i~i~~~~~~~~~-~~~~~~~-~~I~~~~q~~~ 234 (365)
T 1lw7_A 157 YWKFIPKEARPFFAKTVAILGGESSGKSVLVNKLAAVFNTTSAWEYGREFVFEKLGGDEQ-AMQYSDY-PQMALGHQRYI 234 (365)
T ss_dssp GGGGSCTTTGGGTCEEEEEECCTTSHHHHHHHHHHHHTTCEEECCTTHHHHHHSSSSCTT-SSCTTTH-HHHHHHHHHHH
T ss_pred ChhhCCHHHHHhhhCeEEEECCCCCCHHHHHHHHHHHhCCCcchhhHHHHHHhhcCCCcc-cCChhHH-HHHHHHHHHHH
Confidence 45689999999 99999999999999999999999984 67 999874 5665 5566666 56999999999
Q ss_pred CCCccHHhhcccCC-CCChHHHHHHHHHhcHHHHHHhc-C--CCchhh-h-------CCCCCCChhHHHHHHHHHHH---
Q psy1502 425 LFSGTLRKNLDPFE-KYPDYVLWTALQEVELKDMIMEG-A--GLNMTV-Y-------EGGTNFSVGQRQLICLARAI--- 489 (597)
Q Consensus 425 LF~gTI~eNI~~~~-~~~~e~i~~a~~~a~l~~fI~~l-~--GldT~v-g-------e~G~~LSGGQrQRIaIARAl--- 489 (597)
+|++|++|||.++. +..+......+...+...++... . .++..+ + ++|.++||||+||++++|+|
T Consensus 235 ~~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~lllLdE~~~p~~~~g~~~sld~~~r~~l~~~l~~l 314 (365)
T 1lw7_A 235 DYAVRHSHKIAFIDTDFITTQAFCIQYEGKAHPFLDSMIKEYPFDVTILLKNNTEWVDDGLRSLGSQKQRQQFQQLLKKL 314 (365)
T ss_dssp HHHHHHCSSEEEESSCHHHHHHHHHHHHSCCCHHHHHHHHHSCCSEEEEEECCCC-----------CCSHHHHHHHHHHH
T ss_pred HHHHhccCCEEEEeCCchHHHHHHHHHcCCCCHHHHHHHhhcCCCEEEECCCCCCcccCCCcCCccHHHHHHHHHHHHHH
Confidence 99999999998753 34445555555444445555543 2 355433 3 67888999999999999999
Q ss_pred cc--CCCEEEeecCC
Q psy1502 490 VR--NNVILVLDEAT 502 (597)
Q Consensus 490 l~--~p~ILILDEaT 502 (597)
++ +++|+++||||
T Consensus 315 ~~~~~~~ililde~~ 329 (365)
T 1lw7_A 315 LDKYKVPYIEIESPS 329 (365)
T ss_dssp HHGGGCCCEEEECSS
T ss_pred HHHcCCCEEEeCCCC
Confidence 77 89999999997
No 98
>1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B*
Probab=99.77 E-value=5.3e-19 Score=162.17 Aligned_cols=87 Identities=21% Similarity=0.237 Sum_probs=75.6
Q ss_pred CCchhh-----hCCCCCCChhHHHHHHHH------HHHccCCCEEEeecCCCCCCHHHHHHHHHHHHHhc-CCcEEEEec
Q psy1502 463 GLNMTV-----YEGGTNFSVGQRQLICLA------RAIVRNNVILVLDEATANVDPKTDLLIQRTIRKKF-ADCTVLTIA 530 (597)
Q Consensus 463 GldT~v-----ge~G~~LSGGQrQRIaIA------RAll~~p~ILILDEaTSaLD~~te~~I~~~l~~~~-~~~TvI~Ia 530 (597)
+|++.+ .....+||||||||++|| ||++.+|++|||||||++||+++...+.+.|.++. .++|+|+||
T Consensus 41 ~~~l~~~~~~~~~~~~~LSgGe~qrv~lA~~Lalaral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivs 120 (148)
T 1f2t_B 41 KVRLFVVWEGKERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVS 120 (148)
T ss_dssp SEEEEEEETTEEECGGGSCHHHHHHHHHHHHHHHHHHHHSSCSEEEEESCSCTTCHHHHHHHHHHHHHTGGGSSEEEEEE
T ss_pred ceEEEeccccccCChhHCCHHHHHHHHHHhhhHHHHHHcCCCCEEEEECCCccCCHHHHHHHHHHHHHHHccCCEEEEEE
Confidence 677665 244678999999999876 99999999999999999999999999999999875 378999999
Q ss_pred cCchhHhhcCEEEEE--eCCe
Q psy1502 531 HRLHTIMDSDKVLVM--DSGV 549 (597)
Q Consensus 531 Hrlsti~~~D~Iivl--~~G~ 549 (597)
|++.....||++++| ++|.
T Consensus 121 H~~~~~~~~d~ii~l~~~~g~ 141 (148)
T 1f2t_B 121 HDEELKDAADHVIRISLENGS 141 (148)
T ss_dssp SCGGGGGGCSEEEEEEEETTE
T ss_pred ChHHHHHhCCEEEEEEcCCCe
Confidence 999766779999999 5564
No 99
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=99.77 E-value=4e-19 Score=191.83 Aligned_cols=73 Identities=23% Similarity=0.264 Sum_probs=67.9
Q ss_pred CCChhHHHHHHHHHHHc----cCCCEEEeecCCCCCCHHHHHHHHHHHHHhcC-CcEEEEeccCchhHhhcCEEEEEe
Q psy1502 474 NFSVGQRQLICLARAIV----RNNVILVLDEATANVDPKTDLLIQRTIRKKFA-DCTVLTIAHRLHTIMDSDKVLVMD 546 (597)
Q Consensus 474 ~LSGGQrQRIaIARAll----~~p~ILILDEaTSaLD~~te~~I~~~l~~~~~-~~TvI~IaHrlsti~~~D~Iivl~ 546 (597)
.||||||||++|||+|. ++||+||||||||+||+.+...+.+.|.++.. +.++|+|||+...+..||+++++.
T Consensus 333 ~lS~Gq~~~~~la~~la~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~~ii~th~~~~~~~~d~~~~~~ 410 (430)
T 1w1w_A 333 YLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVISLKNTMFEKSDALVGVY 410 (430)
T ss_dssp GSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCBTTBEEEEECSCHHHHTTCSEEEEEE
T ss_pred cCCcchHHHHHHHHHHHHhcCCCCCEEEeCCCcccCCHHHHHHHHHHHHHHhcCCCEEEEEECCHHHHHhCCEEEEEE
Confidence 39999999999999999 68999999999999999999999999988754 679999999998888999999985
No 100
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=99.76 E-value=5.9e-19 Score=203.86 Aligned_cols=156 Identities=21% Similarity=0.277 Sum_probs=109.5
Q ss_pred ccCCceEEEcceeCCCCChHHHhcCcEEEeCCCCCCCccHHhhcccCC-C-CChHHHHHHHHHhcHHHHHHhcCCCchh-
Q psy1502 391 AEVEGVIKIDDIDTEDVPLSKLRSNISIIPQDPVLFSGTLRKNLDPFE-K-YPDYVLWTALQEVELKDMIMEGAGLNMT- 467 (597)
Q Consensus 391 ~~~~G~I~idg~di~~~~~~~lr~~I~~V~Q~~~LF~gTI~eNI~~~~-~-~~~e~i~~a~~~a~l~~fI~~l~GldT~- 467 (597)
.+..|+|.++|.++.++..-.+.+.++++. |+.+.. + .--.++.+..+. ..+++.. -|++..
T Consensus 393 ~~~~~~V~i~G~~i~~~~~~~v~~~l~~~~------------~~~l~~~~~~~~~~~~~~~~~--~~~~L~~-vgL~~l~ 457 (916)
T 3pih_A 393 NREALSVKINGLNIHEFTELSISEELEFLK------------NLNLTEREREIVGELLKEIEK--RLEFLVD-VGLEYLT 457 (916)
T ss_dssp CTTGGGEEETTEEHHHHHHSBHHHHHHHHH------------SCCCCTTTTTTHHHHHHHHHH--HHHHHHT-TTCTTCB
T ss_pred ChHhcCcEECCccHHHhhhCCHHHHHHHHH------------hccCcHHHHHHHHhhHHHHHH--HHHHHHH-cCCcccc
Confidence 356799999999986644333333333322 111110 0 001111111111 1233333 355432
Q ss_pred hhCCCCCCChhHHHHHHHHHHHccCCC--EEEeecCCCCCCHHHHHHHHHHHHHhcC-CcEEEEeccCchhHhhcCEEEE
Q psy1502 468 VYEGGTNFSVGQRQLICLARAIVRNNV--ILVLDEATANVDPKTDLLIQRTIRKKFA-DCTVLTIAHRLHTIMDSDKVLV 544 (597)
Q Consensus 468 vge~G~~LSGGQrQRIaIARAll~~p~--ILILDEaTSaLD~~te~~I~~~l~~~~~-~~TvI~IaHrlsti~~~D~Iiv 544 (597)
.+.....||||||||++|||||..+|+ +|||||||++||+.....+.+.|+++.. +.|+|+|+|++..+..||+|++
T Consensus 458 l~r~~~~LSGGe~QRv~LAraL~~~p~~~lllLDEPT~gLD~~~~~~l~~~L~~L~~~G~TvivVtHd~~~~~~aD~ii~ 537 (916)
T 3pih_A 458 LSRSATTLSGGESQRIRLATQIGSGLTGVIYVLDEPTIGLHPRDTERLIKTLKKLRDLGNTVIVVEHDEEVIRNADHIID 537 (916)
T ss_dssp TTSBGGGCCHHHHHHHHHHHHHHTTCCSCEEEEECTTTTCCGGGHHHHHHHHHHTTTTTCEEEEECCCHHHHHTCSEEEE
T ss_pred ccCCcccCCHHHHHHHHHHHHHhhCCCCcEEEEECCccCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhCCEEEE
Confidence 456677999999999999999999887 9999999999999999999999998854 7899999999999999999999
Q ss_pred E------eCCeEEEecCchhHhhHh
Q psy1502 545 M------DSGVAVVSSFGFFFSKDL 563 (597)
Q Consensus 545 l------~~G~Ive~~~g~y~~l~~ 563 (597)
| ++|+|+. .|.+.++..
T Consensus 538 lgpgag~~~G~iv~--~G~~~e~~~ 560 (916)
T 3pih_A 538 IGPGGGTNGGRVVF--QGTVDELLK 560 (916)
T ss_dssp EESSSGGGCSEEEE--EECHHHHHH
T ss_pred EcCCcccCCCEEEE--eechhhhhc
Confidence 9 8999997 444555543
No 101
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=99.76 E-value=3.6e-20 Score=184.22 Aligned_cols=180 Identities=12% Similarity=0.026 Sum_probs=109.9
Q ss_pred EEEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHh--cc-ccCCceEEEcceeCCCCChHHHhcCcE
Q psy1502 341 IEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIF--RL-AEVEGVIKIDDIDTEDVPLSKLRSNIS 417 (597)
Q Consensus 341 I~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~--~l-~~~~G~I~idg~di~~~~~~~lr~~I~ 417 (597)
++++++++.|+.-..+|.+ .|++|+.++|+||||||||||++.|+ ++ .+.+|.+.+++.+... .....++.++
T Consensus 7 ~~~~~i~tg~~~lD~~l~G---gi~~G~~~~l~GpnGsGKSTLl~~i~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~g 82 (251)
T 2ehv_A 7 QPVRRVKSGIPGFDELIEG---GFPEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLEERAR-DLRREMASFG 82 (251)
T ss_dssp -CCCEECCSCTTTGGGTTT---SEETTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSCHH-HHHHHHHTTT
T ss_pred cccceeecCCHhHHHHhcC---CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEccCCHH-HHHHHHHHcC
Confidence 5667777777543334443 68999999999999999999999999 66 4567888887754321 1223456788
Q ss_pred EEeCCCCCCC-ccHHhhcccCCCCChHHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHHHHHHccCCCEE
Q psy1502 418 IIPQDPVLFS-GTLRKNLDPFEKYPDYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVIL 496 (597)
Q Consensus 418 ~V~Q~~~LF~-gTI~eNI~~~~~~~~e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaIARAll~~p~IL 496 (597)
+++|+...+. -++.++..........+.... . ...+-++.++...+..-..+|+++
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------~----~~~~~~~~~~~~~~~l~~~~p~~l 139 (251)
T 2ehv_A 83 WDFEKYEKEGKIAIVDGVSSVVGLPSEEKFVL-------------------E----DRFNVDNFLRYIYRVVKAINAKRL 139 (251)
T ss_dssp CCHHHHHHTTSEEEEC------------------------------------------CCHHHHHHHHHHHHHHTTCSEE
T ss_pred CChHHHhhcCCEEEEEccccccccccccceec-------------------c----CcccHHHHHHHHHHHHHhhCCCEE
Confidence 9888764432 233333321110000000000 0 011233333333333345799999
Q ss_pred EeecCCCCCC-----HHHHHHHHHHHHHhc-CCcEEEEeccCchhH----------hhc-CEEEEEeC
Q psy1502 497 VLDEATANVD-----PKTDLLIQRTIRKKF-ADCTVLTIAHRLHTI----------MDS-DKVLVMDS 547 (597)
Q Consensus 497 ILDEaTSaLD-----~~te~~I~~~l~~~~-~~~TvI~IaHrlsti----------~~~-D~Iivl~~ 547 (597)
+|||||+.+| +.....+.+.++.+. .++|+|+++|.++.+ ..| |+|++|++
T Consensus 140 ilDep~~~ld~~~d~~~~~~~l~~l~~~l~~~g~tii~vtH~~~~~~~~~~~~~i~~~~aD~vi~l~~ 207 (251)
T 2ehv_A 140 VIDSIPSIALRLEEERKIREVLLKLNTILLEMGVTTILTTEAPDPQHGKLSRYGIEEFIARGVIVLDL 207 (251)
T ss_dssp EEECHHHHHHHSSSGGGHHHHHHHHHHHHHHHCCEEEEEECCC----CCSSSSSCGGGGCSEEEEEEE
T ss_pred EEccHHHHHhhcCCHHHHHHHHHHHHHHHHHCCCeEEEEECCCCCCcccccccChhhEeeeEEEEEee
Confidence 9999999997 555665777666553 389999999999886 457 99999953
No 102
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.76 E-value=1.1e-20 Score=183.05 Aligned_cols=168 Identities=14% Similarity=0.176 Sum_probs=107.0
Q ss_pred EEEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc------cCCceEEE-------cceeCCC-
Q psy1502 341 IEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA------EVEGVIKI-------DDIDTED- 406 (597)
Q Consensus 341 I~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~------~~~G~I~i-------dg~di~~- 406 (597)
|+++|++|+|+ .++|++ |++++|.+++|+|++|||||||++.|+|.. |+.|.+.+ ++..+.+
T Consensus 4 l~~~~~~~~~~--~~~l~~--~~~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~~~~~~~l~Dt 79 (210)
T 1pui_A 4 LNYQQTHFVMS--APDIRH--LPSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVADGKRLVDL 79 (210)
T ss_dssp -------CEEE--ESSGGG--SSCSCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEETTEEEEEC
T ss_pred hhhhhhhheee--cCCHhH--CCCCCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEEecCCEEEEEC
Confidence 78999999996 368888 899999999999999999999999999965 34576654 2222221
Q ss_pred --CC--------hHHHhcCcEEEeCCCCCCCc-cHHhhcccCCCCChHHHHHHHHHhcHHHHHHhcCCCchh-hhCCCCC
Q psy1502 407 --VP--------LSKLRSNISIIPQDPVLFSG-TLRKNLDPFEKYPDYVLWTALQEVELKDMIMEGAGLNMT-VYEGGTN 474 (597)
Q Consensus 407 --~~--------~~~lr~~I~~V~Q~~~LF~g-TI~eNI~~~~~~~~e~i~~a~~~a~l~~fI~~l~GldT~-vge~G~~ 474 (597)
+. .+.|++.++++.|+...+++ ++..|+.......++++.+ ++.. .+.... ++.+-..
T Consensus 80 ~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~---------~~~~-~~~~~~~v~nK~D~ 149 (210)
T 1pui_A 80 PGYGYAEVPEEMKRKWQRALGEYLEKRQSLQGLVVLMDIRHPLKDLDQQMIE---------WAVD-SNIAVLVLLTKADK 149 (210)
T ss_dssp CCCC------CCHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHH---------HHHH-TTCCEEEEEECGGG
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHhhhcccEEEEEEECCCCCchhHHHHHH---------HHHH-cCCCeEEEEecccC
Confidence 11 13456666666665444433 4444443321111122222 2222 234333 4666668
Q ss_pred CChhHHHH-HHHHHHHccCCCEEEeecCCCCCCHHHHHHHHHHHHHhcC
Q psy1502 475 FSVGQRQL-ICLARAIVRNNVILVLDEATANVDPKTDLLIQRTIRKKFA 522 (597)
Q Consensus 475 LSGGQrQR-IaIARAll~~p~ILILDEaTSaLD~~te~~I~~~l~~~~~ 522 (597)
+|+||||| +..||+++++|+++++||||||+|.+.-..+.+.|.+..+
T Consensus 150 ~s~~~~~~~~~~~~~~~~~~~~~~~~~~~Sal~~~~~~~l~~~l~~~~~ 198 (210)
T 1pui_A 150 LASGARKAQLNMVREAVLAFNGDVQVETFSSLKKQGVDKLRQKLDTWFS 198 (210)
T ss_dssp SCHHHHHHHHHHHHHHHGGGCSCEEEEECBTTTTBSHHHHHHHHHHHHC
T ss_pred CCchhHHHHHHHHHHHHHhcCCCCceEEEeecCCCCHHHHHHHHHHHHh
Confidence 99999999 8999999999999999999999999999999999887654
No 103
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=99.74 E-value=2.8e-19 Score=187.50 Aligned_cols=165 Identities=18% Similarity=0.125 Sum_probs=115.0
Q ss_pred EeeEEEeCCCCccceee-eEEEcCCcEEEEEcCCCCCHHHHHHHHhccc--c-CC----ce-EEEcceeCCCCChHHHhc
Q psy1502 344 QNTNVRYLSGPRVIKNL-NITIHPKEKIGIVGRTGAGKSSLIAAIFRLA--E-VE----GV-IKIDDIDTEDVPLSKLRS 414 (597)
Q Consensus 344 ~nVsf~Y~~~~~vL~~i-sl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~--~-~~----G~-I~idg~di~~~~~~~lr~ 414 (597)
+.+++.+ +.|+++ ++.|++|+.++|+||+|||||||++.+++.+ + .+ |. |+||+.+.. .++
T Consensus 111 ~~isTG~----~~LD~lL~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~------~~~ 180 (349)
T 1pzn_A 111 GRISTGS----KSLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTF------RPE 180 (349)
T ss_dssp CEECCSC----HHHHHHHTSSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCC------CHH
T ss_pred CeecCCC----HHHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCC------CHH
Confidence 4455544 345554 6899999999999999999999999999976 3 33 67 999997752 256
Q ss_pred CcEEEeCCCCCCCccHHhhcccCCCCChHHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHHHHHHc----
Q psy1502 415 NISIIPQDPVLFSGTLRKNLDPFEKYPDYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIV---- 490 (597)
Q Consensus 415 ~I~~V~Q~~~LF~gTI~eNI~~~~~~~~e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaIARAll---- 490 (597)
++++++|++.++..++.+||.+....+ |++|+|++.++++++
T Consensus 181 ~i~~i~q~~~~~~~~v~~ni~~~~~~~----------------------------------~~~~~~~l~~~~~~~~~lS 226 (349)
T 1pzn_A 181 RIREIAQNRGLDPDEVLKHIYVARAFN----------------------------------SNHQMLLVQQAEDKIKELL 226 (349)
T ss_dssp HHHHHHHTTTCCHHHHGGGEEEEECCS----------------------------------HHHHHHHHHHHHHHHHHSS
T ss_pred HHHHHHHHcCCCHHHHhhCEEEEecCC----------------------------------hHHHHHHHHHHHHHHHHhc
Confidence 789999999999899999997643322 345666666666666
Q ss_pred ---cCCCEEEeecCCCCCCHHH------------HHHHHHHHHHhc--CCcEEEEeccCchhHhh-cCEEEEEeCCeEEE
Q psy1502 491 ---RNNVILVLDEATANVDPKT------------DLLIQRTIRKKF--ADCTVLTIAHRLHTIMD-SDKVLVMDSGVAVV 552 (597)
Q Consensus 491 ---~~p~ILILDEaTSaLD~~t------------e~~I~~~l~~~~--~~~TvI~IaHrlsti~~-~D~Iivl~~G~Ive 552 (597)
.+|+++|+||||+.+|++. -..+...|.++. .++|+|+++|..+.... ++.+.+...|++++
T Consensus 227 ~G~~~~~llIlDs~ta~ld~~~~~~~~~~~r~~~~~~~l~~L~~la~~~~~tvii~~h~~~~~~~~~~~~~~~~~G~~l~ 306 (349)
T 1pzn_A 227 NTDRPVKLLIVDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQVQARPDAFFGDPTRPIGGHILA 306 (349)
T ss_dssp SSSSCEEEEEEETSSTTHHHHCCSTTTHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECC---------------CCCCC
T ss_pred cccCCCCEEEEeCchHhhhhhhcccccHHHHHHHHHHHHHHHHHHHHHcCcEEEEEcccccccccccCCccccCCcceEe
Confidence 6899999999999999963 133444455543 37899999998775542 34567777888765
No 104
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=99.74 E-value=1e-18 Score=171.50 Aligned_cols=169 Identities=17% Similarity=0.174 Sum_probs=108.7
Q ss_pred EEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc-c-------CCceEEEcceeCCCCChHHHhc
Q psy1502 343 FQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-E-------VEGVIKIDDIDTEDVPLSKLRS 414 (597)
Q Consensus 343 f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~-------~~G~I~idg~di~~~~~~~lr~ 414 (597)
++++++.++.-..+|.+ -+++|+.++|+||||||||||++.|+|++ + ..|.+.+++.+.. + ++
T Consensus 4 ~~~i~tG~~~LD~~l~g---gi~~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~~--~----~~ 74 (231)
T 4a74_A 4 IGRISTGSKSLDKLLGG---GIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTF--R----PE 74 (231)
T ss_dssp CCEECCSCHHHHHHTTS---SEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCC--C----HH
T ss_pred CCccCCCChhHHhHhcC---CCCCCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCCC--C----HH
Confidence 34555555321223433 69999999999999999999999999954 2 2348888886531 1 34
Q ss_pred CcEEEeCCCCCCCccHHhhcccCCCCChHHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHHHHHH--ccC
Q psy1502 415 NISIIPQDPVLFSGTLRKNLDPFEKYPDYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAI--VRN 492 (597)
Q Consensus 415 ~I~~V~Q~~~LF~gTI~eNI~~~~~~~~e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaIARAl--l~~ 492 (597)
++++++|+..++..|+.+|+.+....+..+..+.++. +.+.+.. ++ ..+
T Consensus 75 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~---------------------------~~~~~~~ 125 (231)
T 4a74_A 75 RIREIAQNRGLDPDEVLKHIYVARAFNSNHQMLLVQQ--AEDKIKE---------------------------LLNTDRP 125 (231)
T ss_dssp HHHHHHHHTTSCHHHHHHTEEEEECCSHHHHHHHHHH--HHHHHHH---------------------------HTTSSSC
T ss_pred HHHHHHHHcCCCHHHHhhcEEEEecCChHHHHHHHHH--HHHHHHH---------------------------hcccCCc
Confidence 6778888888888899999976543332221111111 1111111 11 348
Q ss_pred CCEEEeecCCCCCCHH-------HH-----HHHHHHHHHhc--CCcEEEEecc----CchhHhh-cCEEEEEeCCe
Q psy1502 493 NVILVLDEATANVDPK-------TD-----LLIQRTIRKKF--ADCTVLTIAH----RLHTIMD-SDKVLVMDSGV 549 (597)
Q Consensus 493 p~ILILDEaTSaLD~~-------te-----~~I~~~l~~~~--~~~TvI~IaH----rlsti~~-~D~Iivl~~G~ 549 (597)
|++++|||||+.+|++ .+ ..+.+.|.++. .++|+|+|+| ....+.+ ||++++|++|+
T Consensus 126 ~~llilDe~~~~l~~~~~~~~~~~~r~~~~~~~~~~l~~~~~~~g~tvi~vtH~~~~~g~~~~~~~d~~l~l~~~~ 201 (231)
T 4a74_A 126 VKLLIVDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQVQANGGHILAHSATLRVYLRKGK 201 (231)
T ss_dssp EEEEEEETSSHHHHHHSCSTTHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEECC---------CCSEEEEEEECT
T ss_pred eeEEEECChHHHhccccCCCcchhHHHHHHHHHHHHHHHHHHHCCCeEEEEeecccCcchhhHhhceEEEEEEecC
Confidence 9999999999999984 22 24566665543 3789999999 4444765 89999999763
No 105
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.73 E-value=1.8e-19 Score=192.40 Aligned_cols=165 Identities=15% Similarity=0.158 Sum_probs=100.1
Q ss_pred ccEEEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhcccc-CCceEEEcceeCCCCChHHHhcCcE
Q psy1502 339 GKIEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAE-VEGVIKIDDIDTEDVPLSKLRSNIS 417 (597)
Q Consensus 339 ~~I~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~~-~~G~I~idg~di~~~~~~~lr~~I~ 417 (597)
+.|+++|++++|+. .++++|+||+| +|||+||||||||++.|+|+.. +.| .+|.++...+ ...++.++
T Consensus 10 ~~l~~~~l~~~y~~-~~vl~~vsf~I------~lvG~sGaGKSTLln~L~g~~~~~~~---~~~~~~~~~~-t~~~~~i~ 78 (418)
T 2qag_C 10 GYVGFANLPNQVYR-KSVKRGFEFTL------MVVGESGLGKSTLINSLFLTDLYSPE---YPGPSHRIKK-TVQVEQSK 78 (418)
T ss_dssp -----CCCCCCTTT-TTCC-CCCEEE------EEECCTTSSHHHHHHHHTTCCCCCCC---CCSCC------CCEEEEEE
T ss_pred CcEEEEecceeECC-EEEecCCCEEE------EEECCCCCcHHHHHHHHhCCCCCCCC---CCCcccCCcc-ceeeeeEE
Confidence 45899999999964 57999999998 9999999999999999999763 344 2333332111 11246799
Q ss_pred EEeCCCCCC-CccHHhhcccCCCCChHHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHHHHHHccCCC--
Q psy1502 418 IIPQDPVLF-SGTLRKNLDPFEKYPDYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNV-- 494 (597)
Q Consensus 418 ~V~Q~~~LF-~gTI~eNI~~~~~~~~e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaIARAll~~p~-- 494 (597)
+++|++.++ .-||.||+.++...+.++.++. +.+++.. .++++.+||++||||++++|+
T Consensus 79 ~v~q~~~~~~~Ltv~Dt~g~~~~~~~~~~~~~-----i~~~i~~-------------~~~~~l~qr~~IaRal~~d~~~~ 140 (418)
T 2qag_C 79 VLIKEGGVQLLLTIVDTPGFGDAVDNSNCWQP-----VIDYIDS-------------KFEDYLNAESRVNRRQMPDNRVQ 140 (418)
T ss_dssp CC------CEEEEEEECC-----------CHH-----HHHHHHH-------------HHHHHTTTSCC-CCCCCCCC-CC
T ss_pred EEEecCCcccceeeeechhhhhhccchhhHHH-----HHHHHHH-------------HHHHHHHHHHHHHHHhccCCCee
Confidence 999998887 5799999987644333222222 2233332 233456689999999999999
Q ss_pred -EEEeecCC-CCCCHHHHHHHHHHHHHhcCCcEEEEeccCchhH
Q psy1502 495 -ILVLDEAT-ANVDPKTDLLIQRTIRKKFADCTVLTIAHRLHTI 536 (597)
Q Consensus 495 -ILILDEaT-SaLD~~te~~I~~~l~~~~~~~TvI~IaHrlsti 536 (597)
+|++|||| ++||+... .+++. +..+.++|+|.|+..++
T Consensus 141 vlL~ldePt~~~L~~~d~-~~lk~---L~~~v~iIlVinK~Dll 180 (418)
T 2qag_C 141 CCLYFIAPSGHGLKPLDI-EFMKR---LHEKVNIIPLIAKADTL 180 (418)
T ss_dssp EEEEECCC-CCSCCHHHH-HHHHH---HTTTSEEEEEEESTTSS
T ss_pred EEEEEecCcccCCCHHHH-HHHHH---HhccCcEEEEEEcccCc
Confidence 99999999 69998763 33333 44578999999988765
No 106
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=99.73 E-value=2.3e-20 Score=196.70 Aligned_cols=145 Identities=17% Similarity=0.195 Sum_probs=114.6
Q ss_pred EEEeeEEE---eCC-CCccc---------eeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhcccc-CCceEEEcceeCCCC
Q psy1502 342 EFQNTNVR---YLS-GPRVI---------KNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAE-VEGVIKIDDIDTEDV 407 (597)
Q Consensus 342 ~f~nVsf~---Y~~-~~~vL---------~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~~-~~G~I~idg~di~~~ 407 (597)
+|+||+|+ |+. ++++| +++||.+++|+.++|+||||||||||+++|+|+++ .+|.|+++|. .++
T Consensus 137 ~f~~v~f~~~~Y~~~~~~vL~~~~~~~~~~~l~~~i~~G~~i~ivG~sGsGKSTll~~l~~~~~~~~g~I~ie~~--~e~ 214 (361)
T 2gza_A 137 FFKHVRPMSKSLTPFEQELLALKEAGDYMSFLRRAVQLERVIVVAGETGSGKTTLMKALMQEIPFDQRLITIEDV--PEL 214 (361)
T ss_dssp TTSCCCCSCSCCCHHHHHHHHHHHHTCHHHHHHHHHHTTCCEEEEESSSSCHHHHHHHHHTTSCTTSCEEEEESS--SCC
T ss_pred CcCccccccccccchhHHHHhhhhhHHHHHHHHHHHhcCCEEEEECCCCCCHHHHHHHHHhcCCCCceEEEECCc--ccc
Confidence 89999999 853 23466 99999999999999999999999999999999996 6899999985 466
Q ss_pred ChHHHhcCcEEEe-CCCCC---CCccHHhhcccC-CCCChHHHHHHHHHhcHHHHHHhc-CCCchhhhCCCCCCChhHHH
Q psy1502 408 PLSKLRSNISIIP-QDPVL---FSGTLRKNLDPF-EKYPDYVLWTALQEVELKDMIMEG-AGLNMTVYEGGTNFSVGQRQ 481 (597)
Q Consensus 408 ~~~~lr~~I~~V~-Q~~~L---F~gTI~eNI~~~-~~~~~e~i~~a~~~a~l~~fI~~l-~GldT~vge~G~~LSGGQrQ 481 (597)
....+++++++|+ |++.+ +..|+++||..+ ...+|..+..+++.++++++++.+ .|++|.+++-+.+-..+..+
T Consensus 215 ~~~~~~~~v~~v~~q~~~~~~~~~~t~~~~i~~~l~~~pd~~l~~e~r~~~~~~~l~~l~~g~~~~l~t~H~~~~~~~~~ 294 (361)
T 2gza_A 215 FLPDHPNHVHLFYPSEAKEEENAPVTAATLLRSCLRMKPTRILLAELRGGEAYDFINVAASGHGGSITSCHAGSCELTFE 294 (361)
T ss_dssp CCTTCSSEEEEECC----------CCHHHHHHHHTTSCCSEEEESCCCSTHHHHHHHHHHTTCCSCEEEEECSSHHHHHH
T ss_pred CccccCCEEEEeecCccccccccccCHHHHHHHHHhcCCCEEEEcCchHHHHHHHHHHHhcCCCeEEEEECCCCHHHHHH
Confidence 6666788999999 99886 889999999753 233444444445556778899888 99999999999888999999
Q ss_pred HHHHHHH
Q psy1502 482 LICLARA 488 (597)
Q Consensus 482 RIaIARA 488 (597)
|++....
T Consensus 295 Rl~~l~~ 301 (361)
T 2gza_A 295 RLALMVL 301 (361)
T ss_dssp HHHHHHT
T ss_pred HHHHHHh
Confidence 9988763
No 107
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=99.73 E-value=1.3e-18 Score=182.44 Aligned_cols=145 Identities=19% Similarity=0.157 Sum_probs=108.2
Q ss_pred EeeEEEe-CCCCccceeeeE-------EEcCCcEEEEEcCCCCCHHHHHHHHhcccc-C-CceEEEcceeCCCCChHHHh
Q psy1502 344 QNTNVRY-LSGPRVIKNLNI-------TIHPKEKIGIVGRTGAGKSSLIAAIFRLAE-V-EGVIKIDDIDTEDVPLSKLR 413 (597)
Q Consensus 344 ~nVsf~Y-~~~~~vL~~isl-------~I~~G~~vaIVG~SGsGKSTL~~LL~~l~~-~-~G~I~idg~di~~~~~~~lr 413 (597)
.+++++| +...+.|+++.+ ...+|+.++|+||||||||||+++|+|+++ + +|.|...+.++ ++. ++
T Consensus 92 ~~~~iR~~~~~~~~l~~lg~~~~l~~l~~~~~g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~ed~~-e~~---~~ 167 (356)
T 3jvv_A 92 AGAVFRTIPSKVLTMEELGMGEVFKRVSDVPRGLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIEDPI-EFV---HE 167 (356)
T ss_dssp EEEEEEEECCSCCCTTTTTCCHHHHHHHHCSSEEEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEESSC-CSC---CC
T ss_pred cEEEEEECCCCCCCHHHcCChHHHHHHHhCCCCEEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEccCcH-Hhh---hh
Confidence 6788888 444567777776 778999999999999999999999999875 4 46775544333 332 23
Q ss_pred cCcEEEeCCCCCCCccHHhhcccCCCCChHHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHHHHHHccCC
Q psy1502 414 SNISIIPQDPVLFSGTLRKNLDPFEKYPDYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNN 493 (597)
Q Consensus 414 ~~I~~V~Q~~~LF~gTI~eNI~~~~~~~~e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaIARAll~~p 493 (597)
...++++|...-.. .. +-.+ +|||||..+|
T Consensus 168 ~~~~~v~q~~~~~~-----~~------~~~~---------------------------------------~La~aL~~~P 197 (356)
T 3jvv_A 168 SKKCLVNQREVHRD-----TL------GFSE---------------------------------------ALRSALREDP 197 (356)
T ss_dssp CSSSEEEEEEBTTT-----BS------CHHH---------------------------------------HHHHHTTSCC
T ss_pred ccccceeeeeeccc-----cC------CHHH---------------------------------------HHHHHhhhCc
Confidence 45667777543211 00 1010 9999999999
Q ss_pred CEEEeecCCCCCCHHHHHHHHHHHHHhcCCcEEEEeccCchhHhhcCEEEEEeCC
Q psy1502 494 VILVLDEATANVDPKTDLLIQRTIRKKFADCTVLTIAHRLHTIMDSDKVLVMDSG 548 (597)
Q Consensus 494 ~ILILDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrlsti~~~D~Iivl~~G 548 (597)
++|++|||| |.++...+.++. ..|.|+|+++|..+.+..|||+++|..|
T Consensus 198 dvillDEp~---d~e~~~~~~~~~---~~G~~vl~t~H~~~~~~~~dRli~l~~~ 246 (356)
T 3jvv_A 198 DIILVGEMR---DLETIRLALTAA---ETGHLVFGTLHTTSAAKTIDRVVDVFPA 246 (356)
T ss_dssp SEEEESCCC---SHHHHHHHHHHH---HTTCEEEEEESCSSHHHHHHHHHHTSCH
T ss_pred CEEecCCCC---CHHHHHHHHHHH---hcCCEEEEEEccChHHHHHHHHhhhcCc
Confidence 999999999 888866665553 3489999999999999889999988554
No 108
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=99.73 E-value=1e-18 Score=199.34 Aligned_cols=143 Identities=16% Similarity=0.193 Sum_probs=112.2
Q ss_pred ccEEEEeeEEEeC----CCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc--cCCceEEEcceeCCCCChHHH
Q psy1502 339 GKIEFQNTNVRYL----SGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA--EVEGVIKIDDIDTEDVPLSKL 412 (597)
Q Consensus 339 ~~I~f~nVsf~Y~----~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~--~~~G~I~idg~di~~~~~~~l 412 (597)
+.|++++. ++| +++++++|+||+ |+.++|+||||||||||+++|+|+. +..|.+. + ..
T Consensus 549 ~~i~i~~~--rHP~le~~~~~vl~disl~---g~i~~I~GpNGsGKSTlLr~iagl~~~~~~G~~v----p-------a~ 612 (765)
T 1ewq_A 549 DRLQIRAG--RHPVVERRTEFVPNDLEMA---HELVLITGPNMAGKSTFLRQTALIALLAQVGSFV----P-------AE 612 (765)
T ss_dssp SSEEEEEE--CCTTGGGTSCCCCEEEEES---SCEEEEESCSSSSHHHHHHHHHHHHHHHTTTCCB----S-------SS
T ss_pred CcEEEEEe--ECceEccCCceEeeeccCC---CcEEEEECCCCCChHHHHHHHHhhhhhcccCcee----e-------hh
Confidence 45888888 444 245799999999 9999999999999999999999975 4668752 1 12
Q ss_pred hcCcEEEeCCCCCCC-ccHHhhcccCCCCChHHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHHHHHH--
Q psy1502 413 RSNISIIPQDPVLFS-GTLRKNLDPFEKYPDYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAI-- 489 (597)
Q Consensus 413 r~~I~~V~Q~~~LF~-gTI~eNI~~~~~~~~e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaIARAl-- 489 (597)
+..+++|+| +|. -++.||+.. .+|+|++|++.+|+++
T Consensus 613 ~~~i~~v~~---i~~~~~~~d~l~~-------------------------------------g~S~~~~e~~~la~il~~ 652 (765)
T 1ewq_A 613 EAHLPLFDG---IYTRIGASDDLAG-------------------------------------GKSTFMVEMEEVALILKE 652 (765)
T ss_dssp EEEECCCSE---EEEECCC-------------------------------------------CCSHHHHHHHHHHHHHHH
T ss_pred ccceeeHHH---hhccCCHHHHHHh-------------------------------------cccHHHHHHHHHHHHHHh
Confidence 457888887 454 366665532 2588999999999999
Q ss_pred ccCCCEEEeecC---CCCCCHHHH-HHHHHHHHHhcCCcEEEEeccCchhHhhc
Q psy1502 490 VRNNVILVLDEA---TANVDPKTD-LLIQRTIRKKFADCTVLTIAHRLHTIMDS 539 (597)
Q Consensus 490 l~~p~ILILDEa---TSaLD~~te-~~I~~~l~~~~~~~TvI~IaHrlsti~~~ 539 (597)
+.+|+++||||| ||+||..+. ..+.+.|.+ .++|+|++||..+....|
T Consensus 653 a~~p~LlLLDEpgrGTs~lD~~~~~~~i~~~L~~--~g~~vl~~TH~~~l~~~~ 704 (765)
T 1ewq_A 653 ATENSLVLLDEVGRGTSSLDGVAIATAVAEALHE--RRAYTLFATHYFELTALG 704 (765)
T ss_dssp CCTTEEEEEESTTTTSCHHHHHHHHHHHHHHHHH--HTCEEEEECCCHHHHTCC
T ss_pred ccCCCEEEEECCCCCCCCcCHHHHHHHHHHHHHh--CCCEEEEEeCCHHHHHhh
Confidence 999999999999 999999875 578888877 489999999998876655
No 109
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=99.73 E-value=2.7e-20 Score=190.06 Aligned_cols=128 Identities=13% Similarity=-0.000 Sum_probs=94.7
Q ss_pred cCCcEEEEEcCCCCCHHHHHHHHhccccCCceEEEcceeCCCCChHHHhcCcEEEeCCCCCCCccHHhhcccCCC----C
Q psy1502 365 HPKEKIGIVGRTGAGKSSLIAAIFRLAEVEGVIKIDDIDTEDVPLSKLRSNISIIPQDPVLFSGTLRKNLDPFEK----Y 440 (597)
Q Consensus 365 ~~G~~vaIVG~SGsGKSTL~~LL~~l~~~~G~I~idg~di~~~~~~~lr~~I~~V~Q~~~LF~gTI~eNI~~~~~----~ 440 (597)
+++.+|||+|+||||||||+++|.++++..|. . ++.+.+|+||+++|++++++|+.++.. .
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~l~~~g~--------------~-~~~~~iv~~D~f~~~~~~~~~l~~~~~~~~l~ 93 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNHLMEKYG--------------G-EKSIGYASIDDFYLTHEDQLKLNEQFKNNKLL 93 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHHHHG--------------G-GSCEEEEEGGGGBCCHHHHHHHHHHTTTCGGG
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhhhcCC--------------C-CceEEEeccccccCChHHHHHHhccccccchh
Confidence 46789999999999999999999998864441 1 456777799999999999999864210 0
Q ss_pred ChHHHHHHHHHhcHHHHHHhc-CCCchh------hhCCCCCCChhHHHHHHHH--HHHccCCCEEEeecCCCCCCHHH
Q psy1502 441 PDYVLWTALQEVELKDMIMEG-AGLNMT------VYEGGTNFSVGQRQLICLA--RAIVRNNVILVLDEATANVDPKT 509 (597)
Q Consensus 441 ~~e~i~~a~~~a~l~~fI~~l-~GldT~------vge~G~~LSGGQrQRIaIA--RAll~~p~ILILDEaTSaLD~~t 509 (597)
+....-++...+.+.+++..+ .|++|. +...+.++||||+||+++| |++ +|+|||+||+|+++|+++
T Consensus 94 ~~~g~p~a~d~~~l~~~l~~l~~g~~t~~~~~v~~p~y~~~~sgGq~~R~~~a~~~~~--~~~IlIlEG~~~~ld~~~ 169 (290)
T 1odf_A 94 QGRGLPGTHDMKLLQEVLNTIFNNNEHPDQDTVVLPKYDKSQFKGEGDRCPTGQKIKL--PVDIFILEGWFLGFNPIL 169 (290)
T ss_dssp SSSCSTTSBCHHHHHHHHHHHTC------CCEEEECCEETTHHHHTCEECSSCEEEES--SCSEEEEEESSTTCCCCC
T ss_pred hhccCcchhHHHHHHHHHHHhhccCccccCcceeeccCccccCCccccccccccceEc--CCCEEEEeCccccCCccc
Confidence 000011222344567888888 998764 4566789999999999998 666 999999999999999875
No 110
>3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B*
Probab=99.73 E-value=9e-18 Score=158.00 Aligned_cols=77 Identities=21% Similarity=0.320 Sum_probs=71.0
Q ss_pred CCCChhHHHHHHHHHHHc----cCCCEEEeecCCCCCCHHHHHHHHHHHHHhcCCcEEEEeccCchhHhhcCEEEEE--e
Q psy1502 473 TNFSVGQRQLICLARAIV----RNNVILVLDEATANVDPKTDLLIQRTIRKKFADCTVLTIAHRLHTIMDSDKVLVM--D 546 (597)
Q Consensus 473 ~~LSGGQrQRIaIARAll----~~p~ILILDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrlsti~~~D~Iivl--~ 546 (597)
..||||||||++||||+. ++||++||||||++||+.+...+.+.|.++.++.++|+||||..+...||+++.+ +
T Consensus 63 ~~LSgGekqr~ala~~la~~~~~~~~~llLDEp~a~LD~~~~~~~~~~l~~~~~~~~~ivith~~~~~~~ad~i~~v~~~ 142 (173)
T 3kta_B 63 EAMSGGEKALTALAFVFAIQKFKPAPFYLFDEIDAHLDDANVKRVADLIKESSKESQFIVITLRDVMMANADKIIGVSMR 142 (173)
T ss_dssp GGCCHHHHHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSCHHHHTTCSEEEEEEEE
T ss_pred ccCCHHHHHHHHHHHHHHhcccCCCCEEEECCCccCCCHHHHHHHHHHHHHhccCCEEEEEEecHHHHHhCCEEEEEEec
Confidence 679999999999999995 6689999999999999999999999999998889999999999999999999854 5
Q ss_pred CCe
Q psy1502 547 SGV 549 (597)
Q Consensus 547 ~G~ 549 (597)
+|.
T Consensus 143 ~g~ 145 (173)
T 3kta_B 143 DGV 145 (173)
T ss_dssp TTE
T ss_pred CCE
Confidence 774
No 111
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=99.72 E-value=3.7e-18 Score=195.99 Aligned_cols=140 Identities=17% Similarity=0.254 Sum_probs=104.7
Q ss_pred ccCCceEEEcceeCCCCChHHHhcCcEEEeCCCCCCCccHHhhcccCC--CCChHH-------HHHHHHHhcHHHHHHhc
Q psy1502 391 AEVEGVIKIDDIDTEDVPLSKLRSNISIIPQDPVLFSGTLRKNLDPFE--KYPDYV-------LWTALQEVELKDMIMEG 461 (597)
Q Consensus 391 ~~~~G~I~idg~di~~~~~~~lr~~I~~V~Q~~~LF~gTI~eNI~~~~--~~~~e~-------i~~a~~~a~l~~fI~~l 461 (597)
.+....+.|+|.+|.+ +.+.||.|++.|.+ ..+.++ +.+..++. +++..
T Consensus 433 ~~~~l~v~~~g~~i~q------------------~~~ltV~e~~~f~e~l~l~~~~~~i~~~~~~ei~~Rl---~~L~~- 490 (972)
T 2r6f_A 433 KKESLAVLVGGKHIGE------------------VTAMSVTEALAFFDGLELTEKEAQIARLILREIRDRL---GFLQN- 490 (972)
T ss_dssp CTTTTTEESSSCBHHH------------------HHTSBHHHHHHHHHHCCCCHHHHHHSHHHHHHHHHHH---HHHHH-
T ss_pred CHHHheeEECCCcHHH------------------HhhCCHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHH---HHhhh-
Confidence 3445678888876543 34567777777643 233321 11222221 23322
Q ss_pred CCCchh-hhCCCCCCChhHHHHHHHHHHHccCC--CEEEeecCCCCCCHHHHHHHHHHHHHhc-CCcEEEEeccCchhHh
Q psy1502 462 AGLNMT-VYEGGTNFSVGQRQLICLARAIVRNN--VILVLDEATANVDPKTDLLIQRTIRKKF-ADCTVLTIAHRLHTIM 537 (597)
Q Consensus 462 ~GldT~-vge~G~~LSGGQrQRIaIARAll~~p--~ILILDEaTSaLD~~te~~I~~~l~~~~-~~~TvI~IaHrlsti~ 537 (597)
-|++.. .......|||||||||+||+||..+| ++|||||||++||+..-..+.+.|+++. .+.|+|+|+||+..+.
T Consensus 491 vGL~~l~ldR~~~tLSGGEkQRV~LA~aL~~~~~~~llILDEPTagLdp~~~~~L~~~L~~Lr~~G~TVIvVeHdl~~i~ 570 (972)
T 2r6f_A 491 VGLDYLTLSRSAGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVEHDEDTML 570 (972)
T ss_dssp HTCTTSBSSSBGGGCCHHHHHHHHHHHHHTTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHTTTCEEEEECCCHHHHH
T ss_pred CCCCccccCCccccCCHHHHHHHHHHHHHhhCCCCCEEEEeCcccCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHH
Confidence 355543 45666799999999999999999985 9999999999999999999999998876 3789999999999999
Q ss_pred hcCEEEEE------eCCeEEE
Q psy1502 538 DSDKVLVM------DSGVAVV 552 (597)
Q Consensus 538 ~~D~Iivl------~~G~Ive 552 (597)
.||+|++| ++|+|+.
T Consensus 571 ~ADrIi~LgpgaG~~gG~iv~ 591 (972)
T 2r6f_A 571 AADYLIDIGPGAGIHGGEVVA 591 (972)
T ss_dssp SCSEEEEECSSSGGGCCSEEE
T ss_pred hCCEEEEeCCCccCCCCEEEE
Confidence 99999999 7899998
No 112
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=99.71 E-value=1e-17 Score=194.37 Aligned_cols=164 Identities=10% Similarity=0.073 Sum_probs=112.1
Q ss_pred ccEEEEeeEEEeC----CCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc--cCCceEEEcceeCCCCChHHH
Q psy1502 339 GKIEFQNTNVRYL----SGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA--EVEGVIKIDDIDTEDVPLSKL 412 (597)
Q Consensus 339 ~~I~f~nVsf~Y~----~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~--~~~G~I~idg~di~~~~~~~l 412 (597)
+.|++++...-+- +.+.|++|++|++++|+.++|+||+||||||+++.+.... +..|
T Consensus 630 ~~i~i~~~rHP~le~~~~~~~v~ndisl~~~~g~i~~ItGpNGsGKSTlLr~ial~~~~aq~G----------------- 692 (934)
T 3thx_A 630 GRIILKASRHACVEVQDEIAFIPNDVYFEKDKQMFHIITGPNMGGKSTYIRQTGVIVLMAQIG----------------- 692 (934)
T ss_dssp CEEEEEEECCTTTTTC--CCCCCEEEEEETTTBCEEEEECCTTSSHHHHHHHHHHHHHHHHHT-----------------
T ss_pred cceEeecCccchhhhcCCceeecccceeecCCCeEEEEECCCCCCHHHHHHHHHHHHHHHhcC-----------------
Confidence 3588887655441 2357999999999999999999999999999999993321 1122
Q ss_pred hcCcEEEeCCCCCCCccHHhhcccCCCCChHHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHHHHHH--c
Q psy1502 413 RSNISIIPQDPVLFSGTLRKNLDPFEKYPDYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAI--V 490 (597)
Q Consensus 413 r~~I~~V~Q~~~LF~gTI~eNI~~~~~~~~e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaIARAl--l 490 (597)
++||++...+ .+.+.+. ..+ ++.+.+ ...+|+|++++..+|+++ +
T Consensus 693 ----~~vpa~~~~~--~~~d~i~--~~i------------g~~d~l-------------~~~lStf~~e~~~~a~il~~a 739 (934)
T 3thx_A 693 ----CFVPCESAEV--SIVDCIL--ARV------------GAGDSQ-------------LKGVSTFMAEMLETASILRSA 739 (934)
T ss_dssp ----CCBSEEEEEE--ECCSEEE--EEC------------C----------------------CHHHHHHHHHHHHHHHC
T ss_pred ----Cccccccccc--hHHHHHH--Hhc------------CchhhH-------------HHhHhhhHHHHHHHHHHHHhc
Confidence 1222221100 0001110 000 000110 135788888888888888 9
Q ss_pred cCCCEEEeecCCCCCCHHHHHHHH-HHHHHhc--CCcEEEEeccCchhHhhcCEEEEEeCCeEEE
Q psy1502 491 RNNVILVLDEATANVDPKTDLLIQ-RTIRKKF--ADCTVLTIAHRLHTIMDSDKVLVMDSGVAVV 552 (597)
Q Consensus 491 ~~p~ILILDEaTSaLD~~te~~I~-~~l~~~~--~~~TvI~IaHrlsti~~~D~Iivl~~G~Ive 552 (597)
.+|+++||||||+++|+.....+. ..++.+. .++|+|++||..+....||++..+++|++..
T Consensus 740 ~~~sLlLLDEp~~GlD~~~~~~i~~~il~~l~~~~g~~vl~aTH~~el~~lad~~~~v~ng~v~~ 804 (934)
T 3thx_A 740 TKDSLIIIDELGRGTSTYDGFGLAWAISEYIATKIGAFCMFATHFHELTALANQIPTVNNLHVTA 804 (934)
T ss_dssp CTTCEEEEESCSCSSCHHHHHHHHHHHHHHHHHTTCCEEEEEESCGGGGGGGGTCTTEEEEEEEE
T ss_pred cCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCCEEEEEcCcHHHHHHhcccceeEeeEEEE
Confidence 999999999999999999887774 3444443 3799999999999888999999999999875
No 113
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=99.69 E-value=3.2e-19 Score=200.10 Aligned_cols=180 Identities=16% Similarity=0.211 Sum_probs=116.5
Q ss_pred cEEEEeeEEEeCCC-Cccceee----------eEEEcCCcEEEEEcCCCCCHHHHHHHHhccc-c-CCceEEEcceeCCC
Q psy1502 340 KIEFQNTNVRYLSG-PRVIKNL----------NITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-E-VEGVIKIDDIDTED 406 (597)
Q Consensus 340 ~I~f~nVsf~Y~~~-~~vL~~i----------sl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~-~~G~I~idg~di~~ 406 (597)
.++++|+++.|+.. +++|+.+ +|++|. +|||||||||||||+++|+|++ | .+|.|+++|.++..
T Consensus 10 ~i~~~~l~~~~~~~~r~ll~~id~l~~~gv~~~l~lp~---iaIvG~nGsGKSTLL~~I~Gl~~P~~sG~vt~~g~~i~~ 86 (608)
T 3szr_A 10 SVAENNLCSQYEEKVRPCIDLIDSLRALGVEQDLALPA---IAVIGDQSSGKSSVLEALSGVALPRGSGIVTRCPLVLKL 86 (608)
T ss_dssp ----------CHHHHHHHHHHHHHHHHHSCCSSCCCCC---EECCCCTTSCHHHHHHHHHSCC-------CCCSCEEEEE
T ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHhCCCCCcccCCe---EEEECCCCChHHHHHHHHhCCCCCCCCCeEEEcCEEEEE
Confidence 48899999999532 3455544 377776 9999999999999999999987 6 58999999999632
Q ss_pred C---ChHHHhcCcEEEeCCCCCCC-ccHHhhcccCCCCChHHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHH
Q psy1502 407 V---PLSKLRSNISIIPQDPVLFS-GTLRKNLDPFEKYPDYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQL 482 (597)
Q Consensus 407 ~---~~~~lr~~I~~V~Q~~~LF~-gTI~eNI~~~~~~~~e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQR 482 (597)
. ....||+.|+|++|++.+++ .|+++||... . +.... .+..+| +++
T Consensus 87 ~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~i~~~-----------~------~~~~~----------~~~~~s---~~~ 136 (608)
T 3szr_A 87 KKLVNEDKWRGKVSYQDYEIEISDASEVEKEINKA-----------Q------NAIAG----------EGMGIS---HEL 136 (608)
T ss_dssp EECSSSSCCEEEESCC---CCCCCHHHHHTTHHHH-----------H------HHHHC----------SSSCCC---SCC
T ss_pred ecCCccccceeEEeeecccccCCCHHHHHHHHHHH-----------H------HHhcC----------Cccccc---hHH
Confidence 2 24568899999999998886 5899988531 1 00111 111222 244
Q ss_pred HHHHHHHccCCCEEEeecC------CCCCCHHHHHHHHHHHHHhcC---CcEEEEeccCchhH--------hh-----cC
Q psy1502 483 ICLARAIVRNNVILVLDEA------TANVDPKTDLLIQRTIRKKFA---DCTVLTIAHRLHTI--------MD-----SD 540 (597)
Q Consensus 483 IaIARAll~~p~ILILDEa------TSaLD~~te~~I~~~l~~~~~---~~TvI~IaHrlsti--------~~-----~D 540 (597)
+.++.+...+|+++++||| |++||+.+...+.+.+.++.. +.++++++|.+... +. +.
T Consensus 137 i~l~i~~~~~p~LlLlDePGi~~~~t~~LD~~~~~~i~~li~~~l~~~~~iil~vvt~~~d~a~~~~l~la~~v~~~g~r 216 (608)
T 3szr_A 137 ITLEISSRDVPDLTLIDLPGITRVAVGNQPADIGYKIKTLIKKYIQRQETISLVVVPSNVDIATTEALSMAQEVDPEGDR 216 (608)
T ss_dssp EEEEEEESSSCCEEEEECCC------CCSSCSHHHHHHHHHHHHTTSSSCCEEEEEESSSCTTTCHHHHHHHHHCSSCCS
T ss_pred HHHHhcCCCCCceeEeeCCCccccccCCCCHHHHHHHHHHHHHHHhcCCCCceEEEeccchhccHHHHHHHHHHhhcCCc
Confidence 5555666678999999999 999999999999999988643 45788999997632 22 35
Q ss_pred EEEEEeCCeEEE
Q psy1502 541 KVLVMDSGVAVV 552 (597)
Q Consensus 541 ~Iivl~~G~Ive 552 (597)
.|.|+.++.+++
T Consensus 217 tI~VlTK~Dlv~ 228 (608)
T 3szr_A 217 TIGILTKPDLVD 228 (608)
T ss_dssp EEEEEECGGGSS
T ss_pred eEEEecchhhcC
Confidence 688998877665
No 114
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=99.69 E-value=1.9e-18 Score=177.51 Aligned_cols=164 Identities=15% Similarity=0.072 Sum_probs=81.5
Q ss_pred EeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhcc--ccCCceEEEcceeCCCCChHHHhcCcEEEeC
Q psy1502 344 QNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRL--AEVEGVIKIDDIDTEDVPLSKLRSNISIIPQ 421 (597)
Q Consensus 344 ~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l--~~~~G~I~idg~di~~~~~~~lr~~I~~V~Q 421 (597)
+|++++|. ++.+++|++|+| +|||+||+|||||++.|.|. .+++| |.++|.++.. .. -++.+++++|
T Consensus 2 ~~l~~~~~-~~~~l~~~~~~I------~lvG~nG~GKSTLl~~L~g~~~~~~~g-i~~~g~~~~~-t~--~~~~~~~~~q 70 (301)
T 2qnr_A 2 SNLPNQVH-RKSVKKGFEFTL------MVVGESGLGKSTLINSLFLTDLYPERV-ISGAAEKIER-TV--QIEASTVEIE 70 (301)
T ss_dssp -----------------CEEE------EEEEETTSSHHHHHHHHHC----------------------------CEEEEC
T ss_pred CCCcceEC-CEEEEcCCCEEE------EEECCCCCCHHHHHHHHhCCCccCCCC-cccCCcccCC-cc--eEeeEEEEec
Confidence 57888895 457999999998 99999999999999999985 46788 9889887754 11 1467999999
Q ss_pred CCCCC-CccHHhhcccCCCCChHHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHHHHHHccCCCEEEeec
Q psy1502 422 DPVLF-SGTLRKNLDPFEKYPDYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDE 500 (597)
Q Consensus 422 ~~~LF-~gTI~eNI~~~~~~~~e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaIARAll~~p~ILILDE 500 (597)
++.++ .-|+.||..++.....++-++ .+.+++... ++..+ .++|||||||+++|||+. ++++||
T Consensus 71 ~~~~~~~ltv~Dt~g~~~~~~~~e~~~-----~l~~~l~~~--~~~~~----~~~sgg~rqrv~~ara~~----ll~lde 135 (301)
T 2qnr_A 71 ERGVKLRLTVVDTPGYGDAINCRDCFK-----TIISYIDEQ--FERYL----HDESGLNRRHIIDNRVHC----CFYFIS 135 (301)
T ss_dssp ---CCEEEEEEEEC-----------CT-----THHHHHHHH--HHHHH----HHHTSSCCTTCCCCCCCE----EEEEEC
T ss_pred CCCcccCcchhhhhhhhhhcCcHHHHH-----HHHHHHHHH--HHHHH----HHhCHHhhhhhhhhhhhh----eeeeec
Confidence 87655 468999987643222111100 111112111 12222 368999999999999985 999999
Q ss_pred CCCC-CCHHHHHHHHHHHHHhcCCcEEEEeccCchh
Q psy1502 501 ATAN-VDPKTDLLIQRTIRKKFADCTVLTIAHRLHT 535 (597)
Q Consensus 501 aTSa-LD~~te~~I~~~l~~~~~~~TvI~IaHrlst 535 (597)
||++ ||+... .+.+.+.+ ..+.++|+..|++.+
T Consensus 136 Pt~~~Ld~~~~-~~l~~l~~-~~~iilV~~K~Dl~~ 169 (301)
T 2qnr_A 136 PFGHGLKPLDV-AFMKAIHN-KVNIVPVIAKADTLT 169 (301)
T ss_dssp SSSSSCCHHHH-HHHHHHTT-TSCEEEEECCGGGSC
T ss_pred CcccCCCHHHH-HHHHHHHh-cCCEEEEEEeCCCCC
Confidence 9985 999874 23333321 125788888999854
No 115
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=99.68 E-value=7.1e-17 Score=186.05 Aligned_cols=133 Identities=18% Similarity=0.215 Sum_probs=100.0
Q ss_pred CCCccHHhhcccCCC--CChHH--H-----HHHHHHhcHHHHHHhcCCCchh-hhCCCCCCChhHHHHHHHHHHHccC--
Q psy1502 425 LFSGTLRKNLDPFEK--YPDYV--L-----WTALQEVELKDMIMEGAGLNMT-VYEGGTNFSVGQRQLICLARAIVRN-- 492 (597)
Q Consensus 425 LF~gTI~eNI~~~~~--~~~e~--i-----~~a~~~a~l~~fI~~l~GldT~-vge~G~~LSGGQrQRIaIARAll~~-- 492 (597)
+++.||.|++.|.++ .+.++ + .+..++. +++.. -|++.. +...-..|||||||||+||+||..+
T Consensus 466 ~~~ltV~e~l~f~enl~l~~~~~~i~~~i~~ei~~Rl---~~L~~-vGL~~l~l~r~~~tLSGGEkQRV~LA~aL~~~~~ 541 (993)
T 2ygr_A 466 VCELSIADCADFLNALTLGPREQAIAGQVLKEIRSRL---GFLLD-VGLEYLSLSRAAATLSGGEAQRIRLATQIGSGLV 541 (993)
T ss_dssp SSHHHHHHHHHTTTTTTSCHHHHHHHHHHHHHHHHHH---HHHHH-HTGGGSCTTCBGGGCCHHHHHHHHHHHHHTTCCC
T ss_pred HhhCCHHHHHHHHHhcCCCHHHhHHHHHHHHHHHHHH---HHHhh-CCCCccccCCCcccCCHHHHHHHHHHHHHhhCCC
Confidence 566789999887554 33321 1 1111111 22222 355543 5666779999999999999999999
Q ss_pred CCEEEeecCCCCCCHHHHHHHHHHHHHhc-CCcEEEEeccCchhHhhcCEEEEE------eCCeEEEecCchhHhhHh
Q psy1502 493 NVILVLDEATANVDPKTDLLIQRTIRKKF-ADCTVLTIAHRLHTIMDSDKVLVM------DSGVAVVSSFGFFFSKDL 563 (597)
Q Consensus 493 p~ILILDEaTSaLD~~te~~I~~~l~~~~-~~~TvI~IaHrlsti~~~D~Iivl------~~G~Ive~~~g~y~~l~~ 563 (597)
|++|||||||++||+..-..+.+.|+++. .+.|+|+|+||+..+..||+|++| ++|+++. .|-+.++..
T Consensus 542 ~~llILDEPTagLdp~~~~~L~~~L~~Lr~~G~TVIvVeHdl~~i~~ADrIi~Lgp~aG~~gG~iv~--~G~~~e~~~ 617 (993)
T 2ygr_A 542 GVLYVLDEPSIGLHQRDNRRLIETLTRLRDLGNTLIVVEHDEDTIEHADWIVDIGPGAGEHGGRIVH--SGPYDELLR 617 (993)
T ss_dssp SCEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHHTCSEEEEECSSSGGGCCSCCE--EECHHHHHH
T ss_pred CcEEEEeCcccCCCHHHHHHHHHHHHHHHHcCCEEEEECCCHHHHHhCCEEEEecCccccCCCEEEE--eeCHHHhhh
Confidence 58999999999999999999999988875 478999999999999999999999 6899987 344444443
No 116
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=99.68 E-value=1.7e-17 Score=170.30 Aligned_cols=150 Identities=19% Similarity=0.114 Sum_probs=99.5
Q ss_pred cCCcEEEEEcCCCCCHHHHHHHHhccc-cCCceEEEcceeCCCCC----hHHH--hcCcEEEeCCCCCCC-ccHHhhccc
Q psy1502 365 HPKEKIGIVGRTGAGKSSLIAAIFRLA-EVEGVIKIDDIDTEDVP----LSKL--RSNISIIPQDPVLFS-GTLRKNLDP 436 (597)
Q Consensus 365 ~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I~idg~di~~~~----~~~l--r~~I~~V~Q~~~LF~-gTI~eNI~~ 436 (597)
++|+.++||||||||||||++.|+|++ |.+|+|.++|.|+.... +..| |..|++|+|++.++. .|+++|+..
T Consensus 100 ~~g~vi~lvG~nGsGKTTll~~Lagll~~~~g~V~l~g~D~~r~~a~~ql~~~~~~~~i~~v~q~~~~~p~~~v~~~v~~ 179 (304)
T 1rj9_A 100 PKGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDSAALAYDAVQA 179 (304)
T ss_dssp CSSSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECCCCSSTTTTHHHHHHHHHHTCCEECCCTTCCHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeecCCChhHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHHH
Confidence 368999999999999999999999988 57899999999987654 2233 467999999988775 477777643
Q ss_pred CCCCChHHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHHHHHHccCCC--EEEeecCCCCCCHHHHHHHH
Q psy1502 437 FEKYPDYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNV--ILVLDEATANVDPKTDLLIQ 514 (597)
Q Consensus 437 ~~~~~~e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaIARAll~~p~--ILILDEaTSaLD~~te~~I~ 514 (597)
. ...+.+..+-...|... .....++..++||.+||||+..+|+ +|.|| |+++.| +.
T Consensus 180 ~------------~~~~~d~~llDt~G~~~---~~~~~~~eLs~~r~~iaRal~~~P~~~lLvLD-a~t~~~------~~ 237 (304)
T 1rj9_A 180 M------------KARGYDLLFVDTAGRLH---TKHNLMEELKKVKRAIAKADPEEPKEVWLVLD-AVTGQN------GL 237 (304)
T ss_dssp H------------HHHTCSEEEECCCCCCT---TCHHHHHHHHHHHHHHHHHCTTCCSEEEEEEE-TTBCTH------HH
T ss_pred H------------HhCCCCEEEecCCCCCC---chHHHHHHHHHHHHHHHHhhcCCCCeEEEEEc-HHHHHH------HH
Confidence 1 00010000000011110 0112246677999999999999999 55566 444443 33
Q ss_pred HHHHHhc--CCcEEEEeccCchhH
Q psy1502 515 RTIRKKF--ADCTVLTIAHRLHTI 536 (597)
Q Consensus 515 ~~l~~~~--~~~TvI~IaHrlsti 536 (597)
+.+.+.. .+.|+|++||.-.+.
T Consensus 238 ~~~~~~~~~~~~t~iivTh~d~~a 261 (304)
T 1rj9_A 238 EQAKKFHEAVGLTGVIVTKLDGTA 261 (304)
T ss_dssp HHHHHHHHHHCCSEEEEECTTSSC
T ss_pred HHHHHHHHHcCCcEEEEECCcccc
Confidence 3332221 268999999976543
No 117
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=99.66 E-value=3.6e-17 Score=160.33 Aligned_cols=167 Identities=11% Similarity=0.050 Sum_probs=113.8
Q ss_pred CCCCccceeeeE-EEcCCcEEEEEcCCCCCHHHHHHHHhccc-cCCceEEEcceeCCCCChHHHhc---CcEEEeCCCCC
Q psy1502 351 LSGPRVIKNLNI-TIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EVEGVIKIDDIDTEDVPLSKLRS---NISIIPQDPVL 425 (597)
Q Consensus 351 ~~~~~vL~~isl-~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I~idg~di~~~~~~~lr~---~I~~V~Q~~~L 425 (597)
+.+-+.|+++.. .+++|+.++|+||+|||||||++.|++.. +.+|.+.+.+.+. +.+.++. .+++.+|+..
T Consensus 6 ~tg~~~Ld~~~~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~~~~---~~~~~~~~~~~~~~~~~~~~- 81 (235)
T 2w0m_A 6 STGILDFDKLIQGGIPQGFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVTTEE---SRDSIIRQAKQFNWDFEEYI- 81 (235)
T ss_dssp CCSCHHHHGGGTTSEETTCEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEESSS---CHHHHHHHHHHTTCCCGGGB-
T ss_pred cCCchHHHHHhcCCCcCCCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEEccc---CHHHHHHHHHHhcchHHHHh-
Confidence 344567888887 89999999999999999999999999865 5678888766544 3333322 3444444321
Q ss_pred CCccHHhhcccCCCCChHHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHHHHHHccCCC--EEEeecCCC
Q psy1502 426 FSGTLRKNLDPFEKYPDYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNV--ILVLDEATA 503 (597)
Q Consensus 426 F~gTI~eNI~~~~~~~~e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaIARAll~~p~--ILILDEaTS 503 (597)
.+++...+..... . + .-.+- ...|.+|.++...+.+...+|+ ++|+||||+
T Consensus 82 -----~~~~~~~~~~~~~--------------~----~-~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~ 134 (235)
T 2w0m_A 82 -----EKKLIIIDALMKE--------------K----E-DQWSL---VNLTPEELVNKVIEAKQKLGYGKARLVIDSVSA 134 (235)
T ss_dssp -----TTTEEEEECCC-----------------------CTTBC---SSCCHHHHHHHHHHHHHHHCSSCEEEEEETGGG
T ss_pred -----hCCEEEEeccccc--------------c----C-ceeee---cCCCHHHHHHHHHHHHHhhCCCceEEEEECchH
Confidence 1122111111100 0 0 00011 1338999998888888778999 999999998
Q ss_pred CC--CHHHHHHHHHHHHHhc--CCcEEEEeccCc--------hhHh-hcCEEEEEeCC
Q psy1502 504 NV--DPKTDLLIQRTIRKKF--ADCTVLTIAHRL--------HTIM-DSDKVLVMDSG 548 (597)
Q Consensus 504 aL--D~~te~~I~~~l~~~~--~~~TvI~IaHrl--------sti~-~~D~Iivl~~G 548 (597)
.+ |+.....+.+.|.++. .++|+|+++|.. ..+. .||+|++|++.
T Consensus 135 ~~~~d~~~~~~~~~~l~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~~~d~vi~l~~~ 192 (235)
T 2w0m_A 135 LFLDKPAMARKISYYLKRVLNKWNFTIYATSQYAITTSQAFGFGVEHVADGIIRFRRM 192 (235)
T ss_dssp GSSSCGGGHHHHHHHHHHHHHHTTEEEEEEEC-----------CHHHHCSEEEEEEEE
T ss_pred hhcCCHHHHHHHHHHHHHHHHhCCCeEEEEeccCcccccccccchheeeeEEEEEEEE
Confidence 88 9988888888887764 378999999998 3455 59999999764
No 118
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=99.66 E-value=1.1e-19 Score=176.48 Aligned_cols=148 Identities=11% Similarity=0.181 Sum_probs=104.7
Q ss_pred EcCCcEEEEEcCCCCCHHHHHHHHhccccCCceEEEcceeCCCCChHHHhcCcEEEeCCCCCCCccHHhhcccC--CCCC
Q psy1502 364 IHPKEKIGIVGRTGAGKSSLIAAIFRLAEVEGVIKIDDIDTEDVPLSKLRSNISIIPQDPVLFSGTLRKNLDPF--EKYP 441 (597)
Q Consensus 364 I~~G~~vaIVG~SGsGKSTL~~LL~~l~~~~G~I~idg~di~~~~~~~lr~~I~~V~Q~~~LF~gTI~eNI~~~--~~~~ 441 (597)
.++|+++||+||||||||||+++|+|++++.| ..+++|+||.+.++.+..+|+... ....
T Consensus 19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~~~~~g------------------~~~g~v~~d~~~~~~~~~~~~~~~~~~~~~ 80 (208)
T 3c8u_A 19 QPGRQLVALSGAPGSGKSTLSNPLAAALSAQG------------------LPAEVVPMDGFHLDNRLLEPRGLLPRKGAP 80 (208)
T ss_dssp CCSCEEEEEECCTTSCTHHHHHHHHHHHHHTT------------------CCEEEEESGGGBCCHHHHGGGTCGGGTTSG
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHhhcC------------------CceEEEecCCCcCCHHHHHHhcccccCCCC
Confidence 57899999999999999999999999986545 368899999999998888887421 1111
Q ss_pred hHHHHHHHHHhcHHHHHHhc-C--CCchhhhCCCCCCChhHHHHHHHH-HHHccCCCEEEeecCC-----------CCCC
Q psy1502 442 DYVLWTALQEVELKDMIMEG-A--GLNMTVYEGGTNFSVGQRQLICLA-RAIVRNNVILVLDEAT-----------ANVD 506 (597)
Q Consensus 442 ~e~i~~a~~~a~l~~fI~~l-~--GldT~vge~G~~LSGGQrQRIaIA-RAll~~p~ILILDEaT-----------SaLD 506 (597)
.+.....+.+++..+ . .+++.++++|..+||||+||+++| |+++.+++++++|||. ..+|
T Consensus 81 -----~~~~~~~~~~~l~~l~~~~~i~~p~~d~~~~~~~g~~~~v~~~~~~~i~eg~~~l~de~~~~~l~~~~d~~i~vd 155 (208)
T 3c8u_A 81 -----ETFDFEGFQRLCHALKHQERVIYPLFDRARDIAIAGAAEVGPECRVAIIEGNYLLFDAPGWRDLTAIWDVSIRLE 155 (208)
T ss_dssp -----GGBCHHHHHHHHHHHHHCSCEEEEEEETTTTEEEEEEEEECTTCCEEEEEESSTTBCSTTGGGGGGTCSEEEEEC
T ss_pred -----chhhHHHHHHHHHHHhcCCceecccCCccccCCCCCceEEcCCCcEEEECCceeccCCchhHHHHHhcCEEEEEe
Confidence 111122333445554 3 478889999999999999999999 9999999999999984 2345
Q ss_pred HHHHHHHHHHHHHhcC-CcEEEEeccCch
Q psy1502 507 PKTDLLIQRTIRKKFA-DCTVLTIAHRLH 534 (597)
Q Consensus 507 ~~te~~I~~~l~~~~~-~~TvI~IaHrls 534 (597)
...+..+...+++... ++|...+.||..
T Consensus 156 ~~~~~~~~R~~~R~~~~g~t~~~~~~~~~ 184 (208)
T 3c8u_A 156 VPMADLEARLVQRWLDHGLNHDAAVARAQ 184 (208)
T ss_dssp CCHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhcCCCHHHHHHHHH
Confidence 5555555444444321 344444444433
No 119
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.65 E-value=3.2e-17 Score=174.41 Aligned_cols=179 Identities=11% Similarity=0.100 Sum_probs=115.9
Q ss_pred cEEEEeeEEEeCCCCccceeeeEEEcCCcE--EEEEcCCCCCHHHHHHHHhccccCCceEEEcceeCCCCChHHHhcCcE
Q psy1502 340 KIEFQNTNVRYLSGPRVIKNLNITIHPKEK--IGIVGRTGAGKSSLIAAIFRLAEVEGVIKIDDIDTEDVPLSKLRSNIS 417 (597)
Q Consensus 340 ~I~f~nVsf~Y~~~~~vL~~isl~I~~G~~--vaIVG~SGsGKSTL~~LL~~l~~~~G~I~idg~di~~~~~~~lr~~I~ 417 (597)
.+++++ +++|++ .+ |+++||++++|+. +|||||||||||||+++|+|+. ++|.++...++...++.++
T Consensus 16 ~l~~~~-~~~y~~-~~-L~~vsl~i~~Gei~~vaLvG~nGaGKSTLln~L~G~~-------l~g~~~~~~~~~~~~~~i~ 85 (427)
T 2qag_B 16 TVPLAG-HVGFDS-LP-DQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTK-------FEGEPATHTQPGVQLQSNT 85 (427)
T ss_dssp -CCCCC-CC-CC---C-HHHHHHSCC-CCEEEEEEECSTTSSSHHHHHHHHTSC-------C-------CCSSCEEEEEE
T ss_pred eEEEee-EEEECC-ee-cCCCceEecCCCeeEEEEECCCCCCHHHHHHHHhCcc-------ccCCcCCCCCccceEeeEE
Confidence 366677 788864 34 9999999999999 9999999999999999999984 4555554444444567899
Q ss_pred EEeCCCCCC-CccHHhhcccCCCCChHHHHHHHH---HhcHHHHHHhcCCC--------chh-------hhCCCCCCChh
Q psy1502 418 IIPQDPVLF-SGTLRKNLDPFEKYPDYVLWTALQ---EVELKDMIMEGAGL--------NMT-------VYEGGTNFSVG 478 (597)
Q Consensus 418 ~V~Q~~~LF-~gTI~eNI~~~~~~~~e~i~~a~~---~a~l~~fI~~l~Gl--------dT~-------vge~G~~LSGG 478 (597)
|++|++.++ +-|+.||+.++...+.+..++.+. .....+++....|. |+. |-+.+..|+-.
T Consensus 86 ~v~Q~~~l~~~ltv~D~~~~g~~~~~~~~~~~i~~~i~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~l~~~ 165 (427)
T 2qag_B 86 YDLQESNVRLKLTIVSTVGFGDQINKEDSYKPIVEFIDAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHSLKSL 165 (427)
T ss_dssp EEEEC--CEEEEEEEEEECCCC-CCHHHHSHHHHHHHHHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC---CHH
T ss_pred EEeecCccccccchhhhhhhhhccccchhhhHHHHHHHHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCCCCHH
Confidence 999999887 469999999876655443222211 11223333332122 222 12445567766
Q ss_pred HHHHHHHHHHHccCCCEEEeecCCCCCCHHHHHHHHHHHHH-hc-CCcEEEEecc
Q psy1502 479 QRQLICLARAIVRNNVILVLDEATANVDPKTDLLIQRTIRK-KF-ADCTVLTIAH 531 (597)
Q Consensus 479 QrQRIaIARAll~~p~ILILDEaTSaLD~~te~~I~~~l~~-~~-~~~TvI~IaH 531 (597)
+ +.|+|+|-.+++|+++|++|..|.++.-..+.+.+.+ +. .+.+++.|+.
T Consensus 166 D---ieilk~L~~~~~vI~Vi~KtD~Lt~~E~~~l~~~I~~~L~~~gi~I~~is~ 217 (427)
T 2qag_B 166 D---LVTMKKLDSKVNIIPIIAKADAISKSELTKFKIKITSELVSNGVQIYQFPT 217 (427)
T ss_dssp H---HHHHHHTCSCSEEEEEESCGGGSCHHHHHHHHHHHHHHHBTTBCCCCCCC-
T ss_pred H---HHHHHHHhhCCCEEEEEcchhccchHHHHHHHHHHHHHHHHcCCcEEecCC
Confidence 5 8999999999999999999999988766667777765 43 3667887775
No 120
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=99.62 E-value=3e-16 Score=152.69 Aligned_cols=153 Identities=16% Similarity=0.101 Sum_probs=97.9
Q ss_pred CCccceeeeE-EEcCCcEEEEEcCCCCCHHHHHHHHhccccCCceEEEcceeCCCCChHHHhcCcEEEeCCCCCCCccHH
Q psy1502 353 GPRVIKNLNI-TIHPKEKIGIVGRTGAGKSSLIAAIFRLAEVEGVIKIDDIDTEDVPLSKLRSNISIIPQDPVLFSGTLR 431 (597)
Q Consensus 353 ~~~vL~~isl-~I~~G~~vaIVG~SGsGKSTL~~LL~~l~~~~G~I~idg~di~~~~~~~lr~~I~~V~Q~~~LF~gTI~ 431 (597)
+-+.|+++.. .+++|+.++|+||+|||||||++.+++ .+..+.++++..+ ..+.+.+++.
T Consensus 5 G~~~LD~~l~Ggi~~G~~~~i~G~~GsGKTtl~~~l~~-~~~~~v~~i~~~~--~~~~~~~~~~---------------- 65 (220)
T 2cvh_A 5 GTKSLDSLLGGGFAPGVLTQVYGPYASGKTTLALQTGL-LSGKKVAYVDTEG--GFSPERLVQM---------------- 65 (220)
T ss_dssp SCHHHHHHTTSSBCTTSEEEEECSTTSSHHHHHHHHHH-HHCSEEEEEESSC--CCCHHHHHHH----------------
T ss_pred CcHHHHHhhcCCCcCCEEEEEECCCCCCHHHHHHHHHH-HcCCcEEEEECCC--CCCHHHHHHH----------------
Confidence 3345666655 699999999999999999999999999 2223444444322 1122222211
Q ss_pred hhcccCCCCChHHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChh--HHHHHHHHHHHccC-CCEEEeecCCCCCCHH
Q psy1502 432 KNLDPFEKYPDYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVG--QRQLICLARAIVRN-NVILVLDEATANVDPK 508 (597)
Q Consensus 432 eNI~~~~~~~~e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGG--QrQRIaIARAll~~-p~ILILDEaTSaLD~~ 508 (597)
... ...+.++ +...+ .+ ..+|++ |+|+++.+|+++++ |+++|+||||+.+|+.
T Consensus 66 --~~~-~~~~~~~------------~~~~~-----~~----~~~~~~~~~~~~~~~~~~l~~~~~~lliiD~~~~~l~~~ 121 (220)
T 2cvh_A 66 --AET-RGLNPEE------------ALSRF-----IL----FTPSDFKEQRRVIGSLKKTVDSNFALVVVDSITAHYRAE 121 (220)
T ss_dssp --HHT-TTCCHHH------------HHHHE-----EE----ECCTTTSHHHHHHHHHHHHCCTTEEEEEEECCCCCTTGG
T ss_pred --HHh-cCCChHH------------HhhcE-----EE----EecCCHHHHHHHHHHHHHHhhcCCCEEEEcCcHHHhhhc
Confidence 000 0011111 11111 01 123344 47899999999986 9999999999999975
Q ss_pred HH--------HHHHHHHHHhcC--CcEEEEeccCch-------------hHh-hcCEEEEEeCC
Q psy1502 509 TD--------LLIQRTIRKKFA--DCTVLTIAHRLH-------------TIM-DSDKVLVMDSG 548 (597)
Q Consensus 509 te--------~~I~~~l~~~~~--~~TvI~IaHrls-------------ti~-~~D~Iivl~~G 548 (597)
.+ ..+.+.|.++.+ ++|+|+++|... .+. .||.|++|+..
T Consensus 122 ~~~~~~~~~~~~~~~~L~~l~~~~~~~vi~~~h~~~~~~~~~~~p~~~~~~~~~~d~vi~l~~~ 185 (220)
T 2cvh_A 122 ENRSGLIAELSRQLQVLLWIARKHNIPVIVINQVHFDSRTEMTKPVAEQTLGYRCKDILRLDKL 185 (220)
T ss_dssp GGSSTTHHHHHHHHHHHHHHHHHHTCCEEEEECSSSSCTTSSCCSCCCHHHHHTSSEEEEEEEC
T ss_pred CchHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeEEEcCCCCccccCCCcceeecCcEEEEEEEe
Confidence 43 334455666543 789999999865 343 59999999764
No 121
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=99.62 E-value=1.3e-16 Score=184.76 Aligned_cols=154 Identities=18% Similarity=0.213 Sum_probs=103.7
Q ss_pred cEEEEeeEEEe-C-----CCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc--cCCceEEEcceeCCCCChHH
Q psy1502 340 KIEFQNTNVRY-L-----SGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA--EVEGVIKIDDIDTEDVPLSK 411 (597)
Q Consensus 340 ~I~f~nVsf~Y-~-----~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~--~~~G~I~idg~di~~~~~~~ 411 (597)
.|++++..--. . +++.|++|+||++++|+.++|+||||||||||++.+.++. ...|.
T Consensus 640 ~i~i~~~rHP~le~~~~~~~~~V~ndvsl~~~~g~i~~ItGPNGaGKSTlLr~i~~i~~~aq~g~--------------- 704 (918)
T 3thx_B 640 KIVIKNGRHPVIDVLLGEQDQYVPNNTDLSEDSERVMIITGPNMGGKSSYIKQVALITIMAQIGS--------------- 704 (918)
T ss_dssp EEEEEEECCHHHHHHTCSCSSSCCEEEEECTTSCCEEEEESCCCHHHHHHHHHHHHHHHHHHHTC---------------
T ss_pred cEEEEeccchhhhhhhccCCceecccccccCCCCeEEEEECCCCCchHHHHHHHHHHHHHhhcCc---------------
Confidence 57777653322 1 2467999999999999999999999999999999997642 11221
Q ss_pred HhcCcEEEeCCCCCCCccHHhhcccCCCCChHHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHHHHHHcc
Q psy1502 412 LRSNISIIPQDPVLFSGTLRKNLDPFEKYPDYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVR 491 (597)
Q Consensus 412 lr~~I~~V~Q~~~LF~gTI~eNI~~~~~~~~e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaIARAll~ 491 (597)
+||++..-+ ++.+++-. .. ++.|.+ ..+-..+|+|++|+..|+|+ +.
T Consensus 705 ------~vpa~~~~i--~~~d~i~~--~i------------g~~d~l----------~~~~stfs~em~~~~~il~~-a~ 751 (918)
T 3thx_B 705 ------YVPAEEATI--GIVDGIFT--RM------------GAADNI----------YKGRSTFMEELTDTAEIIRK-AT 751 (918)
T ss_dssp ------CBSSSEEEE--ECCSEEEE--EC--------------------------------CCHHHHHHHHHHHHHH-CC
T ss_pred ------cccchhhhh--hHHHHHHH--hC------------ChHHHH----------HHhHHHhhHHHHHHHHHHHh-cc
Confidence 222221100 01111110 00 111111 11224689999999999999 89
Q ss_pred CCCEEEeecCCCCCCHHHHHHHHH-HHHHhc--CCcEEEEeccCchhHhhcCE
Q psy1502 492 NNVILVLDEATANVDPKTDLLIQR-TIRKKF--ADCTVLTIAHRLHTIMDSDK 541 (597)
Q Consensus 492 ~p~ILILDEaTSaLD~~te~~I~~-~l~~~~--~~~TvI~IaHrlsti~~~D~ 541 (597)
+|+++||||||++||+.....+.. .++.+. .++|+|++||.++....||+
T Consensus 752 ~p~LlLLDEP~~GlD~~~~~~i~~~il~~L~~~~g~tvl~vTH~~el~~l~~~ 804 (918)
T 3thx_B 752 SQSLVILDELGRGTSTHDGIAIAYATLEYFIRDVKSLTLFVTHYPPVCELEKN 804 (918)
T ss_dssp TTCEEEEESTTTTSCHHHHHHHHHHHHHHHHHTTCCEEEEECSCGGGGGHHHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHhcCCeEEEEeCcHHHHHHHhh
Confidence 999999999999999998888864 444442 48999999999988776654
No 122
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=99.60 E-value=1.2e-17 Score=159.36 Aligned_cols=160 Identities=11% Similarity=-0.062 Sum_probs=99.0
Q ss_pred EEcCCcEEEEEcCCCCCHHHHHHHHhccccCCceEEEcceeCCCCChHHHhcCcEEEeCCCCCCCccHHhhcccCCCCCh
Q psy1502 363 TIHPKEKIGIVGRTGAGKSSLIAAIFRLAEVEGVIKIDDIDTEDVPLSKLRSNISIIPQDPVLFSGTLRKNLDPFEKYPD 442 (597)
Q Consensus 363 ~I~~G~~vaIVG~SGsGKSTL~~LL~~l~~~~G~I~idg~di~~~~~~~lr~~I~~V~Q~~~LF~gTI~eNI~~~~~~~~ 442 (597)
.+++|+.++|+||||||||||+++|++. +..|.|.+||.++..... -++.++|++|++. .+.|+.+|+....
T Consensus 5 ~i~~g~~i~l~G~~GsGKSTl~~~La~~-~~~g~i~i~~d~~~~~~~--~~~~~~~~~~~~~-~~~~v~~~l~~~~---- 76 (191)
T 1zp6_A 5 DDLGGNILLLSGHPGSGKSTIAEALANL-PGVPKVHFHSDDLWGYIK--HGRIDPWLPQSHQ-QNRMIMQIAADVA---- 76 (191)
T ss_dssp -CCTTEEEEEEECTTSCHHHHHHHHHTC-SSSCEEEECTTHHHHTCC--SSCCCTTSSSHHH-HHHHHHHHHHHHH----
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHhc-cCCCeEEEcccchhhhhh--cccccCCccchhh-hhHHHHHHHHHHH----
Confidence 5789999999999999999999999998 668999999987643221 1345788888765 4567777764310
Q ss_pred HHHHHHHHHhcHHHHHHhc---CCCchhh--hCCCCCCChhHHHHHHHHHHHccCCCEEEeecCCCCCCHHHHHHHHHHH
Q psy1502 443 YVLWTALQEVELKDMIMEG---AGLNMTV--YEGGTNFSVGQRQLICLARAIVRNNVILVLDEATANVDPKTDLLIQRTI 517 (597)
Q Consensus 443 e~i~~a~~~a~l~~fI~~l---~GldT~v--ge~G~~LSGGQrQRIaIARAll~~p~ILILDEaTSaLD~~te~~I~~~l 517 (597)
.. .. ..+....++.. .+++..- +.....+|+||+||+++||++.++|+++ +|++....+.+.+
T Consensus 77 -~~--~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ls~~~~~~v~~~R~~~r~~~~l--------ld~~~~~~~~~~~ 144 (191)
T 1zp6_A 77 -GR--YA-KEGYFVILDGVVRPDWLPAFTALARPLHYIVLRTTAAEAIERCLDRGGDSL--------SDPLVVADLHSQF 144 (191)
T ss_dssp -HH--HH-HTSCEEEECSCCCTTTTHHHHTTCSCEEEEEEECCHHHHHHHHHTTCTTSC--------CCHHHHHHHHHHT
T ss_pred -HH--Hh-ccCCeEEEeccCcHHHHHHHHhcCCCeEEEEecCCHHHHHHHHHhcCCCcc--------CCHHHHHHHHHHH
Confidence 00 00 00000000000 0111111 2334579999999999999999999976 5887766666666
Q ss_pred HHhcCCcEEEEeccCchhHhhcCEE
Q psy1502 518 RKKFADCTVLTIAHRLHTIMDSDKV 542 (597)
Q Consensus 518 ~~~~~~~TvI~IaHrlsti~~~D~I 542 (597)
..+....++++.+|..+.-.-+|+|
T Consensus 145 ~~l~~~~~~~i~t~~~~~~~~~~~i 169 (191)
T 1zp6_A 145 ADLGAFEHHVLPVSGKDTDQALQSA 169 (191)
T ss_dssp TCCGGGGGGEEECTTCCTTTTTTTT
T ss_pred hccCcccccEEECCCCCHHHHHHHH
Confidence 5443222334445543333334444
No 123
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=99.60 E-value=1.5e-15 Score=154.19 Aligned_cols=151 Identities=10% Similarity=0.048 Sum_probs=99.2
Q ss_pred EEcCCcEEEEEcCCCCCHHHHHHHHhccccCCceEEEcceeCCCCChHHHhcCcEEEeCCCCCCCccHHhhcc-cCCCCC
Q psy1502 363 TIHPKEKIGIVGRTGAGKSSLIAAIFRLAEVEGVIKIDDIDTEDVPLSKLRSNISIIPQDPVLFSGTLRKNLD-PFEKYP 441 (597)
Q Consensus 363 ~I~~G~~vaIVG~SGsGKSTL~~LL~~l~~~~G~I~idg~di~~~~~~~lr~~I~~V~Q~~~LF~gTI~eNI~-~~~~~~ 441 (597)
.+++|+.++|+||+|||||||+..+++... .|.+. .|.+..+ +..+.|++.+... ..+.+++. .+.+.+
T Consensus 26 gl~~G~i~~i~G~~GsGKTtl~~~l~~~~~-~g~~~-~g~~~~~------~~~v~~~~~e~~~--~~~~~r~~~~g~~~~ 95 (279)
T 1nlf_A 26 NMVAGTVGALVSPGGAGKSMLALQLAAQIA-GGPDL-LEVGELP------TGPVIYLPAEDPP--TAIHHRLHALGAHLS 95 (279)
T ss_dssp TEETTSEEEEEESTTSSHHHHHHHHHHHHH-TCCCT-TCCCCCC------CCCEEEEESSSCH--HHHHHHHHHHHTTSC
T ss_pred CccCCCEEEEEcCCCCCHHHHHHHHHHHHh-cCCCc-CCCccCC------CccEEEEECCCCH--HHHHHHHHHHHhhcC
Confidence 378999999999999999999999998543 56663 3544321 3467787766432 22333322 122233
Q ss_pred hHHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHHHHHHccCCCEEEeecCCC--CCCHHHH---HHHHHH
Q psy1502 442 DYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATA--NVDPKTD---LLIQRT 516 (597)
Q Consensus 442 ~e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaIARAll~~p~ILILDEaTS--aLD~~te---~~I~~~ 516 (597)
.++..++++ .+ ++....+.....||+||+|++ |+++++|+++|+||||+ ++|..+. ..+.+.
T Consensus 96 ~~~~~~~~~---------~l-~l~~~~~~~~~~ls~g~~~~i---~~l~~~~~livlDe~~~~~~~d~~~~~~~~~~~~~ 162 (279)
T 1nlf_A 96 AEERQAVAD---------GL-LIQPLIGSLPNIMAPEWFDGL---KRAAEGRRLMVLDTLRRFHIEEENASGPMAQVIGR 162 (279)
T ss_dssp HHHHHHHHH---------HE-EECCCTTSCCCTTSHHHHHHH---HHHHTTCSEEEEECGGGGCCSCTTCHHHHHHHHHH
T ss_pred hhhhhhccC---------ce-EEeecCCCCcccCCHHHHHHH---HHhcCCCCEEEECCHHHhcCCCcCchHHHHHHHHH
Confidence 332222222 21 222234556778999998865 78999999999999999 9998544 677777
Q ss_pred HHHhc--CCcEEEEeccCchhH
Q psy1502 517 IRKKF--ADCTVLTIAHRLHTI 536 (597)
Q Consensus 517 l~~~~--~~~TvI~IaHrlsti 536 (597)
|.++. .++|+|+|+|.....
T Consensus 163 L~~l~~~~g~tvi~i~H~~~~~ 184 (279)
T 1nlf_A 163 MEAIAADTGCSIVFLHHASKGA 184 (279)
T ss_dssp HHHHHHHHCCEEEEEEEC----
T ss_pred HHHHHHHcCCEEEEEecCCCcc
Confidence 77764 379999999987654
No 124
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=99.58 E-value=4.2e-16 Score=152.56 Aligned_cols=130 Identities=13% Similarity=0.129 Sum_probs=97.0
Q ss_pred EEEcCCcEEEEEcCCCCCHHHHHHHHhcccc---CCceEEEcceeCCCCChHHHhcCcEEEeCCCCCCCc-cH----Hhh
Q psy1502 362 ITIHPKEKIGIVGRTGAGKSSLIAAIFRLAE---VEGVIKIDDIDTEDVPLSKLRSNISIIPQDPVLFSG-TL----RKN 433 (597)
Q Consensus 362 l~I~~G~~vaIVG~SGsGKSTL~~LL~~l~~---~~G~I~idg~di~~~~~~~lr~~I~~V~Q~~~LF~g-TI----~eN 433 (597)
-..++|+.++|+||||||||||+++|+|+++ ..|.|.+++.+.+. ..++.++|++|++.+|.. |. .||
T Consensus 11 ~~~~~G~ii~l~GpsGsGKSTLlk~L~g~~~p~~~~g~v~~ttr~~~~----~e~~gi~y~fq~~~~f~~~~~~~~f~E~ 86 (219)
T 1s96_A 11 HHMAQGTLYIVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTRQPRP----GEVHGEHYFFVNHDEFKEMISRDAFLEH 86 (219)
T ss_dssp ----CCCEEEEECCTTSCHHHHHHHHHHHSCTTTEEECCCEECSCCCT----TCCBTTTBEECCHHHHHHHHHTTCEEEE
T ss_pred ccCCCCcEEEEECCCCCCHHHHHHHHhccCCCCceEEEEEecCCCCCc----ccccCceEEECCHHHHHHHHhcCHHHHH
Confidence 3579999999999999999999999999875 47999999887653 236789999999998875 44 466
Q ss_pred cccCCC---CChHHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHHHHHHccCCCEEEeecCCCCCCHHHH
Q psy1502 434 LDPFEK---YPDYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATANVDPKTD 510 (597)
Q Consensus 434 I~~~~~---~~~e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaIARAll~~p~ILILDEaTSaLD~~te 510 (597)
+.+... .+.++ ++.++..++++||| ||+++.
T Consensus 87 ~~~~~~~yg~~~~~-----------------------------------------v~~~l~~G~illLD-----LD~~~~ 120 (219)
T 1s96_A 87 AEVFGNYYGTSREA-----------------------------------------IEQVLATGVDVFLD-----IDWQGA 120 (219)
T ss_dssp EEETTEEEEEEHHH-----------------------------------------HHHHHTTTCEEEEE-----CCHHHH
T ss_pred HHHHhccCCCCHHH-----------------------------------------HHHHHhcCCeEEEE-----ECHHHH
Confidence 654221 11111 22333346999999 999999
Q ss_pred HHHHHHHHHhcCCcEEEEeccCchhHhhcCEEEEEeCC
Q psy1502 511 LLIQRTIRKKFADCTVLTIAHRLHTIMDSDKVLVMDSG 548 (597)
Q Consensus 511 ~~I~~~l~~~~~~~TvI~IaHrlsti~~~D~Iivl~~G 548 (597)
..+.+.+. .+.|+++++|+++.+.. |+ ++.|
T Consensus 121 ~~i~~~l~---~~~tI~i~th~~~~l~~--Rl--~~rG 151 (219)
T 1s96_A 121 QQIRQKMP---HARSIFILPPSKIELDR--RL--RGRG 151 (219)
T ss_dssp HHHHHHCT---TCEEEEEECSSHHHHHH--HH--HTTS
T ss_pred HHHHHHcc---CCEEEEEECCCHHHHHH--HH--HHcC
Confidence 99988775 57899999999998876 33 5666
No 125
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=99.58 E-value=6e-16 Score=177.56 Aligned_cols=163 Identities=15% Similarity=0.133 Sum_probs=107.7
Q ss_pred cEEEEeeEEEe-C---CCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc-c-CCceEEEcceeCCCCChHHHh
Q psy1502 340 KIEFQNTNVRY-L---SGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-E-VEGVIKIDDIDTEDVPLSKLR 413 (597)
Q Consensus 340 ~I~f~nVsf~Y-~---~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~-~~G~I~idg~di~~~~~~~lr 413 (597)
.|++++..--. + +++.+++|+||+ ++|+.++|+||||||||||+++|+|+. . ..|.. +. . -+
T Consensus 577 ~i~i~~~rHP~le~~~~~~~vlndisl~-~~g~i~~ItGpNGsGKSTlLr~iagl~~~~q~G~~------vp---a--~~ 644 (800)
T 1wb9_A 577 GIRITEGRHPVVEQVLNEPFIANPLNLS-PQRRMLIITGPNMGGKSTYMRQTALIALMAYIGSY------VP---A--QK 644 (800)
T ss_dssp CEEEEEECCTTHHHHCSSCCCCEEEEEC-SSSCEEEEECCTTSSHHHHHHHHHHHHHHHTTTCC------BS---S--SE
T ss_pred CEEEEeccccEEEccCCCceeeeccccc-CCCcEEEEECCCCCChHHHHHHHHHHHHHHhcCcc------cc---h--hc
Confidence 47777643211 1 345799999999 999999999999999999999999974 2 33421 10 0 12
Q ss_pred cCcEEEeCCCCCCC-ccHHhhcccCCCCChHHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHHHHHHccC
Q psy1502 414 SNISIIPQDPVLFS-GTLRKNLDPFEKYPDYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRN 492 (597)
Q Consensus 414 ~~I~~V~Q~~~LF~-gTI~eNI~~~~~~~~e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaIARAll~~ 492 (597)
..+++++| +|. -++.||+.. |. ..+|+|+++ ++.+...+.+
T Consensus 645 ~~i~~~~~---i~~~~~~~d~l~~--------------------------~~--------stf~~e~~~-~~~il~~a~~ 686 (800)
T 1wb9_A 645 VEIGPIDR---IFTRVGAADDLAS--------------------------GR--------STFMVEMTE-TANILHNATE 686 (800)
T ss_dssp EEECCCCE---EEEEEC---------------------------------------------CHHHHHH-HHHHHHHCCT
T ss_pred ccceeHHH---HHhhCCHHHHHHh--------------------------hh--------hhhhHHHHH-HHHHHHhccC
Confidence 34666655 332 233333321 11 235666654 4444556899
Q ss_pred CCEEEeecCCCCCCHHHHHHH-HHHHHHhc--CCcEEEEeccCchhHhhcCEEEEEeCCeEEE
Q psy1502 493 NVILVLDEATANVDPKTDLLI-QRTIRKKF--ADCTVLTIAHRLHTIMDSDKVLVMDSGVAVV 552 (597)
Q Consensus 493 p~ILILDEaTSaLD~~te~~I-~~~l~~~~--~~~TvI~IaHrlsti~~~D~Iivl~~G~Ive 552 (597)
|+++||||||+++|+.....+ .+.++.+. .++|+|++||..+....||++..+++|++..
T Consensus 687 psLlLLDEp~~Gtd~~d~~~i~~~ll~~l~~~~g~~vl~~TH~~el~~l~d~~~~v~n~~~~~ 749 (800)
T 1wb9_A 687 YSLVLMDEIGRGTSTYDGLSLAWACAENLANKIKALTLFATHYFELTQLPEKMEGVANVHLDA 749 (800)
T ss_dssp TEEEEEESCCCCSSSSHHHHHHHHHHHHHHHTTCCEEEEECSCGGGGGHHHHSTTEEEEEEEE
T ss_pred CCEEEEECCCCCCChhHHHHHHHHHHHHHHhccCCeEEEEeCCHHHHHHhhhhhceEEEEEEE
Confidence 999999999888888655544 44455543 3789999999999888899887788877654
No 126
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=99.57 E-value=5.8e-18 Score=175.36 Aligned_cols=153 Identities=17% Similarity=0.136 Sum_probs=108.7
Q ss_pred CcEEEEEcCCCCCHHHHHHHHhccc---------cCCceEEEcceeCCCCC---------------hHHHhcCcEEE---
Q psy1502 367 KEKIGIVGRTGAGKSSLIAAIFRLA---------EVEGVIKIDDIDTEDVP---------------LSKLRSNISII--- 419 (597)
Q Consensus 367 G~~vaIVG~SGsGKSTL~~LL~~l~---------~~~G~I~idg~di~~~~---------------~~~lr~~I~~V--- 419 (597)
=+.++|+|++|||||||++.|+|++ ++.|+|.|||.++...+ ...+++.++++
T Consensus 4 i~v~~i~G~~GaGKTTll~~l~~~~~~~~~aVi~~d~G~i~idg~~l~~~~~~~~el~~gCicc~~~~~~~~~l~~l~~~ 83 (318)
T 1nij_A 4 IAVTLLTGFLGAGKTTLLRHILNEQHGYKIAVIENEFGEVSVDDQLIGDRATQIKTLTNGCICCSRSNELEDALLDLLDN 83 (318)
T ss_dssp EEEEEEEESSSSSCHHHHHHHHHSCCCCCEEEECSSCCSCCEEEEEECTTSCEEEEETTSCEEECTTSCHHHHHHHHHHH
T ss_pred ccEEEEEecCCCCHHHHHHHHHhhcCCCcEEEEEecCcccCccHHHHhCCCCCEEEECCCceEEcccHHHHHHHHHHHhH
Confidence 3589999999999999999999975 36799999999998763 35677889988
Q ss_pred eCCCC-CCCccHHhhcccCCCCChHHHHHHH-HHhcHHHHHHhcCCCchhhhC-----CCCCCChhHHHHHHHHHHHccC
Q psy1502 420 PQDPV-LFSGTLRKNLDPFEKYPDYVLWTAL-QEVELKDMIMEGAGLNMTVYE-----GGTNFSVGQRQLICLARAIVRN 492 (597)
Q Consensus 420 ~Q~~~-LF~gTI~eNI~~~~~~~~e~i~~a~-~~a~l~~fI~~l~GldT~vge-----~G~~LSGGQrQRIaIARAll~~ 492 (597)
+|++. .|+.++.||..++.. ..+.+.. ......+. ..+++.-|.++- .-.++||||+||...+|+++.+
T Consensus 84 ~q~~~~~~~~~v~E~~~l~~p---~~~~~~~~~~~~~~~~-~~l~~~l~~vd~~~~~~~~~~ls~g~~Q~~~ad~ill~k 159 (318)
T 1nij_A 84 LDKGNIQFDRLVIECTGMADP---GPIIQTFFSHEVLCQR-YLLDGVIALVDAVHADEQMNQFTIAQSQVGYADRILLTK 159 (318)
T ss_dssp HHHTSCCCSEEEEEEETTCCH---HHHHHHHHHSHHHHHH-EEEEEEEEEEETTTHHHHHHHCHHHHHHHHTCSEEEEEC
T ss_pred HhcCCCCCCEEEEeCCCCCCH---HHHHHHHhcCccccCe-EEECCEEEEEEHHHHHHHHhhchHHHHHHHhCCEEEEEC
Confidence 78876 478899999976531 2222221 00000000 001222222221 0126899999999999999999
Q ss_pred CCEEEeecCCCCCCHHHHHHHHHHHHHhcCCcEEEEeccCch
Q psy1502 493 NVILVLDEATANVDPKTDLLIQRTIRKKFADCTVLTIAHRLH 534 (597)
Q Consensus 493 p~ILILDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrls 534 (597)
|+++ ||| ..+.+.|+++.++.|+++++|+..
T Consensus 160 ~dl~--de~---------~~l~~~l~~l~~~~~ii~~sh~~~ 190 (318)
T 1nij_A 160 TDVA--GEA---------EKLHERLARINARAPVYTVTHGDI 190 (318)
T ss_dssp TTTC--SCT---------HHHHHHHHHHCSSSCEEECCSSCC
T ss_pred cccC--CHH---------HHHHHHHHHhCCCCeEEEecccCC
Confidence 9987 888 677788887778899999999743
No 127
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=99.54 E-value=7e-15 Score=145.20 Aligned_cols=147 Identities=15% Similarity=0.132 Sum_probs=93.7
Q ss_pred EEcCCcEEEEEcCCCCCHHHHHHHHhc--ccc------CCceEEEcceeCCC-CChHHHhcCcEEEeCCCCCCCccHHhh
Q psy1502 363 TIHPKEKIGIVGRTGAGKSSLIAAIFR--LAE------VEGVIKIDDIDTED-VPLSKLRSNISIIPQDPVLFSGTLRKN 433 (597)
Q Consensus 363 ~I~~G~~vaIVG~SGsGKSTL~~LL~~--l~~------~~G~I~idg~di~~-~~~~~lr~~I~~V~Q~~~LF~gTI~eN 433 (597)
-+++|+.++|+||+|||||||+..|++ ..+ ..|.+++++.+... -....+++++++.+|+ +.+|
T Consensus 20 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~-------~~~~ 92 (243)
T 1n0w_A 20 GIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAVAERYGLSGSD-------VLDN 92 (243)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHHH-------HHHT
T ss_pred CCcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHHHHHHHHHcCCCHHH-------HhhC
Confidence 489999999999999999999999998 343 46889999876321 1233455667777765 5677
Q ss_pred cccCCCCChHHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHHHHHHccCCCEEEeecCCCCCCHH-----
Q psy1502 434 LDPFEKYPDYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATANVDPK----- 508 (597)
Q Consensus 434 I~~~~~~~~e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaIARAll~~p~ILILDEaTSaLD~~----- 508 (597)
+.+....+.++..+.++. +.+.+. -.+|+++++||+|+.+|++
T Consensus 93 ~~~~~~~~~~~~~~~~~~--~~~~~~------------------------------~~~~~lliiD~~~~~~~~~~~~~~ 140 (243)
T 1n0w_A 93 VAYARAFNTDHQTQLLYQ--ASAMMV------------------------------ESRYALLIVDSATALYRTDYSGRG 140 (243)
T ss_dssp EEEEECCSHHHHHHHHHH--HHHHHH------------------------------HSCEEEEEEETSSGGGC-------
T ss_pred eEEEecCCHHHHHHHHHH--HHHHHh------------------------------cCCceEEEEeCchHHHHHHhcCCc
Confidence 765444444443332211 111111 1689999999999999986
Q ss_pred --HH-----HHHHHHHHHhcC--CcEEEEeccCchhHh--------------------hcCEEEEEeCC
Q psy1502 509 --TD-----LLIQRTIRKKFA--DCTVLTIAHRLHTIM--------------------DSDKVLVMDSG 548 (597)
Q Consensus 509 --te-----~~I~~~l~~~~~--~~TvI~IaHrlsti~--------------------~~D~Iivl~~G 548 (597)
++ ..+...|.++.+ ++|+|+++|-..... .||.+++|+.|
T Consensus 141 ~~~~r~~~~~~~~~~l~~~~~~~~~tvi~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~d~vi~l~~~ 209 (243)
T 1n0w_A 141 ELSARQMHLARFLRMLLRLADEFGVAVVITNQVVAQVDGAAMFAADPKKPIGGNIIAHASTTRLYLRKG 209 (243)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHCCEEEEEC-------------------------CCTTCEEEEEEEC
T ss_pred cHHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeeeecCCCccccCCCcccCCccChhhhcCcEEEEEEEc
Confidence 42 233444444332 789999999655432 58999999875
No 128
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=99.52 E-value=5.3e-17 Score=169.32 Aligned_cols=171 Identities=15% Similarity=0.077 Sum_probs=116.3
Q ss_pred EEEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc-cCCceEEEcceeCCCCCh----HHHhcC
Q psy1502 341 IEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EVEGVIKIDDIDTEDVPL----SKLRSN 415 (597)
Q Consensus 341 I~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I~idg~di~~~~~----~~lr~~ 415 (597)
|+++|++++|. ...+|+++||++++|+.++|+|++|||||||++.|+|++ |.+|+|.+.|.|+..... ...|.+
T Consensus 30 ie~~~~~~~~~-~~~~l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~~~~~~g~v~i~~~d~~~~~~~~~~~~~~~~ 108 (337)
T 2qm8_A 30 AESRRADHRAA-VRDLIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPSSTRTGGSILGDKTR 108 (337)
T ss_dssp HTCSSHHHHHH-HHHHHHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECGGGGSSCCCSSCCGGG
T ss_pred HeeCCcccccC-hHHHHHhCCcccCCCeEEEEECCCCCCHHHHHHHHHHhhhhCCCEEEEEEEcCcccccccchHHHhhh
Confidence 55677777774 246999999999999999999999999999999999987 578999999998864321 235778
Q ss_pred cEEEeCCCCCCCc-------------cHH-----------------------------hhcccC---CCCC-hHHHHHHH
Q psy1502 416 ISIIPQDPVLFSG-------------TLR-----------------------------KNLDPF---EKYP-DYVLWTAL 449 (597)
Q Consensus 416 I~~V~Q~~~LF~g-------------TI~-----------------------------eNI~~~---~~~~-~e~i~~a~ 449 (597)
+++|+|++.+|.. +++ ++.... -+.+ .++.. .+
T Consensus 109 i~~v~q~~~~~~~~~~~~~~l~G~tr~~~e~~~~~~~~~~~~iliDT~Gi~~~~~~v~~~~d~vl~v~d~~~~~~~~-~i 187 (337)
T 2qm8_A 109 MARLAIDRNAFIRPSPSSGTLGGVAAKTRETMLLCEAAGFDVILVETVGVGQSETAVADLTDFFLVLMLPGAGDELQ-GI 187 (337)
T ss_dssp STTGGGCTTEEEECCCCCSSHHHHHHHHHHHHHHHHHTTCCEEEEEECSSSSCHHHHHTTSSEEEEEECSCC-------C
T ss_pred heeeccCcccccccCcccccccchHHHHHHHHHHHhcCCCCEEEEECCCCCcchhhHHhhCCEEEEEEcCCCcccHH-HH
Confidence 9999999998852 112 222100 0000 01110 00
Q ss_pred HHhcHHHHHHhc--CCCchhhhCCCCCCChhHHHHHHHHHHHcc------CCCEEEeecCCCCCCHHHHHHHHHHHHHhc
Q psy1502 450 QEVELKDMIMEG--AGLNMTVYEGGTNFSVGQRQLICLARAIVR------NNVILVLDEATANVDPKTDLLIQRTIRKKF 521 (597)
Q Consensus 450 ~~a~l~~fI~~l--~GldT~vge~G~~LSGGQrQRIaIARAll~------~p~ILILDEaTSaLD~~te~~I~~~l~~~~ 521 (597)
+ .++.+...-. +..|-. ....+|+|++|+++.|++++. +|+++. |||+|.+.-..+.+.|.+..
T Consensus 188 ~-~~i~~~~~ivvlNK~Dl~---~~~~~s~~~~~~l~~a~~l~~~~~~~~~~~vl~----~Sal~g~gi~~L~~~I~~~~ 259 (337)
T 2qm8_A 188 K-KGIFELADMIAVNKADDG---DGERRASAAASEYRAALHILTPPSATWTPPVVT----ISGLHGKGLDSLWSRIEDHR 259 (337)
T ss_dssp C-TTHHHHCSEEEEECCSTT---CCHHHHHHHHHHHHHHHTTBCCSBTTBCCCEEE----EBTTTTBSHHHHHHHHHHHH
T ss_pred H-HHHhccccEEEEEchhcc---CchhHHHHHHHHHHHHHHhccccccCCCCCEEE----EeCCCCCCHHHHHHHHHHHH
Confidence 0 0111110000 222210 123579999999999999998 688886 99999999999988887754
No 129
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=99.48 E-value=6.6e-14 Score=147.97 Aligned_cols=74 Identities=22% Similarity=0.284 Sum_probs=68.1
Q ss_pred CCCChhHHHHH------HHHHHHccC-CCEEEeecCCCCCCHHHHHHHHHHHHHhcCCcEEEEeccCchhHhhcCEEEEE
Q psy1502 473 TNFSVGQRQLI------CLARAIVRN-NVILVLDEATANVDPKTDLLIQRTIRKKFADCTVLTIAHRLHTIMDSDKVLVM 545 (597)
Q Consensus 473 ~~LSGGQrQRI------aIARAll~~-p~ILILDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrlsti~~~D~Iivl 545 (597)
..|||||+||+ |+|||+..+ |++|||||||++||+++...+.+.|.++..+.|+|+|||++.....||++++|
T Consensus 279 ~~lS~G~~~~~~lal~la~a~~l~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~vi~~th~~~~~~~~d~~~~l 358 (371)
T 3auy_A 279 DNLSGGEQIAVALSLRLAIANALIGNRVECIILDEPTVYLDENRRAKLAEIFRKVKSIPQMIIITHHRELEDVADVIINV 358 (371)
T ss_dssp GGSCHHHHHHHHHHHHHHHHHHHHSSCCSEEEEESTTTTCCHHHHHHHHHHHHHCCSCSEEEEEESCGGGGGGCSEEEEE
T ss_pred HhcCHHHHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCCcCCHHHHHHHHHHHHHhccCCeEEEEEChHHHHhhCCEEEEE
Confidence 58999999987 678999999 99999999999999999999999999876667999999999876779999999
Q ss_pred e
Q psy1502 546 D 546 (597)
Q Consensus 546 ~ 546 (597)
+
T Consensus 359 ~ 359 (371)
T 3auy_A 359 K 359 (371)
T ss_dssp E
T ss_pred E
Confidence 7
No 130
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=99.43 E-value=6.3e-16 Score=143.37 Aligned_cols=86 Identities=14% Similarity=0.116 Sum_probs=71.1
Q ss_pred EeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccccCCceEEEcceeCCCCChHHHhcCcEEEeCCC
Q psy1502 344 QNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAEVEGVIKIDDIDTEDVPLSKLRSNISIIPQDP 423 (597)
Q Consensus 344 ~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~~~~G~I~idg~di~~~~~~~lr~~I~~V~Q~~ 423 (597)
+|++++|+ +..+++++||++++|+.++|+||+|||||||+++|+|+.|.+|+|.++|.++.+. ...+ .+|+|++
T Consensus 11 ~~~~~~~g-~~~~l~~vsl~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l~~~G~V~~~g~~i~~~--~~~~---~~~~q~~ 84 (158)
T 1htw_A 11 EFSMLRFG-KKFAEILLKLHTEKAIMVYLNGDLGAGKTTLTRGMLQGIGHQGNVKSPTYTLVEE--YNIA---GKMIYHF 84 (158)
T ss_dssp HHHHHHHH-HHHHHHHHHHCCSSCEEEEEECSTTSSHHHHHHHHHHHTTCCSCCCCCTTTCEEE--EEET---TEEEEEE
T ss_pred HHHHHHHH-HHHHHhccccccCCCCEEEEECCCCCCHHHHHHHHHHhCCCCCeEEECCEeeeee--ccCC---Ccceecc
Confidence 45666774 3468999999999999999999999999999999999778889999999888521 1112 2899999
Q ss_pred CCCCccHHhhcc
Q psy1502 424 VLFSGTLRKNLD 435 (597)
Q Consensus 424 ~LF~gTI~eNI~ 435 (597)
.+|.-|+.||+.
T Consensus 85 ~l~~ltv~e~l~ 96 (158)
T 1htw_A 85 DLYRLADPEELE 96 (158)
T ss_dssp ECTTCSCTTHHH
T ss_pred ccccCCcHHHHH
Confidence 999879999984
No 131
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.42 E-value=7.6e-14 Score=145.97 Aligned_cols=139 Identities=14% Similarity=0.168 Sum_probs=78.7
Q ss_pred cEEEEEcCCCCCHHHHHHHHhc-cc-cCCceEEEcceeCCCCChHHHhcCcEEEeCCCCCCCccHHhhcccCCCCChHHH
Q psy1502 368 EKIGIVGRTGAGKSSLIAAIFR-LA-EVEGVIKIDDIDTEDVPLSKLRSNISIIPQDPVLFSGTLRKNLDPFEKYPDYVL 445 (597)
Q Consensus 368 ~~vaIVG~SGsGKSTL~~LL~~-l~-~~~G~I~idg~di~~~~~~~lr~~I~~V~Q~~~LF~gTI~eNI~~~~~~~~e~i 445 (597)
..+.|+||+|+||||+++.|++ ++ +..|.+.++|.+...... -+..+++++|++++.-.. -..+ ..+.+.+
T Consensus 37 ~~~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~----~~~~-~~~~~~~ 109 (354)
T 1sxj_E 37 PHLLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASN--RKLELNVVSSPYHLEITP----SDMG-NNDRIVI 109 (354)
T ss_dssp CCEEEECSTTSSHHHHHHTHHHHHSCTTCCC--------------------CCEECSSEEEECC----C-----CCHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeeccccc--ccceeeeecccceEEecH----hhcC-CcchHHH
Confidence 3499999999999999999999 76 467999999988764333 267899999988652110 0000 1111123
Q ss_pred HHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHHHHHHccCCCEEEeecCCCCCCHHHHHHHHHHHHHhcCCcE
Q psy1502 446 WTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATANVDPKTDLLIQRTIRKKFADCT 525 (597)
Q Consensus 446 ~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaIARAll~~p~ILILDEaTSaLD~~te~~I~~~l~~~~~~~T 525 (597)
.+.++.+ . ...+++..+ .||| +..+|+++|||||++ ||+++.+.+.+.+++..++.+
T Consensus 110 ~~~i~~~-----~-~~~~~~~~~-----~ls~-----------l~~~~~vlilDE~~~-L~~~~~~~L~~~le~~~~~~~ 166 (354)
T 1sxj_E 110 QELLKEV-----A-QMEQVDFQD-----SKDG-----------LAHRYKCVIINEANS-LTKDAQAALRRTMEKYSKNIR 166 (354)
T ss_dssp HHHHHHH-----T-TTTC----------------------------CCEEEEEECTTS-SCHHHHHHHHHHHHHSTTTEE
T ss_pred HHHHHHH-----H-Hhccccccc-----cccc-----------cCCCCeEEEEeCccc-cCHHHHHHHHHHHHhhcCCCE
Confidence 3322211 1 112232222 5676 788999999999999 999999999999998877899
Q ss_pred EEEeccCchhH
Q psy1502 526 VLTIAHRLHTI 536 (597)
Q Consensus 526 vI~IaHrlsti 536 (597)
+|++||+++.+
T Consensus 167 ~Il~t~~~~~l 177 (354)
T 1sxj_E 167 LIMVCDSMSPI 177 (354)
T ss_dssp EEEEESCSCSS
T ss_pred EEEEeCCHHHH
Confidence 99999997654
No 132
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=99.42 E-value=7.4e-14 Score=150.38 Aligned_cols=169 Identities=14% Similarity=0.208 Sum_probs=110.8
Q ss_pred ceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc-cCCceEEEcceeCCCCC----hHH--HhcCcEEEeCCCCCC-Cc
Q psy1502 357 IKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EVEGVIKIDDIDTEDVP----LSK--LRSNISIIPQDPVLF-SG 428 (597)
Q Consensus 357 L~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I~idg~di~~~~----~~~--lr~~I~~V~Q~~~LF-~g 428 (597)
-+++||++++|++++|||+||||||||++.|+|++ +.+|+|.++|.|..... +.. .|+.|+||+|++.++ ..
T Consensus 283 ~~~Isl~i~~GeVI~LVGpNGSGKTTLl~~LAgll~~~~G~V~l~g~D~~r~aa~eQL~~~~~r~~I~vV~Q~~~~~p~~ 362 (503)
T 2yhs_A 283 DEPLNVEGKAPFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSAS 362 (503)
T ss_dssp BCCCCCCSCTTEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECCCTTCHHHHHHHHHHHHHHTCCEECCSTTCCHHH
T ss_pred CCCceeeccCCeEEEEECCCcccHHHHHHHHHHHhhhcCCeEEEecCcccchhhHHHHHHHHHhcCceEEecccCcCHHH
Confidence 45899999999999999999999999999999988 47899999988875431 122 377899999998766 46
Q ss_pred cHHhhcccCCCCChHHHHHHHHHhcHHHHHHhcCCCchhhhCC-C-----CCCChhHHHHHHHHHHHccC-C-CEEEeec
Q psy1502 429 TLRKNLDPFEKYPDYVLWTALQEVELKDMIMEGAGLNMTVYEG-G-----TNFSVGQRQLICLARAIVRN-N-VILVLDE 500 (597)
Q Consensus 429 TI~eNI~~~~~~~~e~i~~a~~~a~l~~fI~~l~GldT~vge~-G-----~~LSGGQrQRIaIARAll~~-p-~ILILDE 500 (597)
|+++|+.+... .|+|..+=+. | .++-.--+|++.++|++..+ | .+|+..+
T Consensus 363 tV~e~l~~a~~----------------------~~~DvVLIDTaGrl~~~~~lm~EL~kiv~iar~l~~~~P~evLLvLD 420 (503)
T 2yhs_A 363 VIFDAIQAAKA----------------------RNIDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTID 420 (503)
T ss_dssp HHHHHHHHHHH----------------------TTCSEEEECCCCSCCCHHHHHHHHHHHHHHHHTTCTTCSSEEEEEEE
T ss_pred HHHHHHHHHHh----------------------cCCCEEEEeCCCccchhhhHHHHHHHHHHHHHHhccCCCCeeEEEec
Confidence 88888864210 1222211111 0 11112235889999988654 5 3555555
Q ss_pred CCCCCCHHHHHHHHHHHHHhcCCcEEEEeccCchh---------Hh-h-cCEEEEEeCCeEEE
Q psy1502 501 ATANVDPKTDLLIQRTIRKKFADCTVLTIAHRLHT---------IM-D-SDKVLVMDSGVAVV 552 (597)
Q Consensus 501 aTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrlst---------i~-~-~D~Iivl~~G~Ive 552 (597)
||++.|.... .+.+.+. -+.|.+++|| +.. +. . --.|..+-.|+-++
T Consensus 421 attGq~al~~---ak~f~~~-~~itgvIlTK-LD~takgG~~lsi~~~~~~PI~fig~Ge~vd 478 (503)
T 2yhs_A 421 ASTGQNAVSQ---AKLFHEA-VGLTGITLTK-LDGTAKGGVIFSVADQFGIPIRYIGVGERIE 478 (503)
T ss_dssp GGGTHHHHHH---HHHHHHH-TCCSEEEEEC-GGGCSCCTHHHHHHHHHCCCEEEEECSSSGG
T ss_pred CcccHHHHHH---HHHHHhh-cCCCEEEEEc-CCCcccccHHHHHHHHHCCCEEEEecCCChh
Confidence 8887655432 2334332 3689999999 443 21 1 24666666665433
No 133
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=99.42 E-value=7.8e-16 Score=168.63 Aligned_cols=171 Identities=16% Similarity=0.121 Sum_probs=120.0
Q ss_pred CccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhcccc-CCceEEEcceeCCCCChHHHhcCcEEEeCCCCCCC--ccH
Q psy1502 354 PRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAE-VEGVIKIDDIDTEDVPLSKLRSNISIIPQDPVLFS--GTL 430 (597)
Q Consensus 354 ~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~~-~~G~I~idg~di~~~~~~~lr~~I~~V~Q~~~LF~--gTI 430 (597)
+.+++++++.+++|+.++|+|||||||||++++|+|+.+ .+|.|+++|.+--..+. .++++++.|... .. .|+
T Consensus 247 ~~~l~~l~~~v~~g~~i~I~GptGSGKTTlL~aL~~~i~~~~giitied~~E~~~~~---~~~v~~~~r~~~-~~~~~~~ 322 (511)
T 2oap_1 247 SGVLAYLWLAIEHKFSAIVVGETASGKTTTLNAIMMFIPPDAKVVSIEDTREIKLYH---ENWIAEVTRTGM-GEGEIDM 322 (511)
T ss_dssp HHHHHHHHHHHHTTCCEEEEESTTSSHHHHHHHHGGGSCTTCCEEEEESSCCCCCCC---SSEEEEECBCCS-SSCCBCH
T ss_pred HHHHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhCCCCCCEEEEcCcccccCCC---CCeEEEEeeccc-ccCCcCH
Confidence 347899999999999999999999999999999999885 68999999876333221 456788888765 33 366
Q ss_pred Hhhccc----C------CCCChHHHHHHHHHhc-------------HHHHHHhc----CCCchhhh-------CCCCCCC
Q psy1502 431 RKNLDP----F------EKYPDYVLWTALQEVE-------------LKDMIMEG----AGLNMTVY-------EGGTNFS 476 (597)
Q Consensus 431 ~eNI~~----~------~~~~~e~i~~a~~~a~-------------l~~fI~~l----~GldT~vg-------e~G~~LS 476 (597)
++++.. . .+..++|...+++.++ +.+.+..+ .|....+. .....+|
T Consensus 323 ~~~l~~~LR~~PD~iivgEir~~E~~~~l~a~~tGh~~~sT~Ha~~~~~~l~Rl~~~~~~v~~~l~~~l~~vi~~~~~~s 402 (511)
T 2oap_1 323 YDLLRAALRQRPDYIIVGEVRGREAQTLFQAMSTGHASYSTLHAGDINQMVYRLESEPLKVPRSMLQFLDIALVQTMWVR 402 (511)
T ss_dssp HHHHHTTGGGCCSEEEESCCCSTHHHHHHHHHHTTCEEEEEEECSSHHHHHHHHHSTTTCCCGGGGGGCCEEEEEEEEES
T ss_pred HHHHHHhhccCCCeEEeCCcCHHHHHHHHHhhcCCCCcccccccCCHHHHHHHHHhcccccHHHHHhhccEEEEEEEEEe
Confidence 666531 1 2456666666665543 23444443 23332222 1234579
Q ss_pred hhHHHHHHHHHHHccCCCEEEeecCCCCCCHHHHHHHHHHHHHhcC-CcEEEE--eccCchhHhh-cC
Q psy1502 477 VGQRQLICLARAIVRNNVILVLDEATANVDPKTDLLIQRTIRKKFA-DCTVLT--IAHRLHTIMD-SD 540 (597)
Q Consensus 477 GGQrQRIaIARAll~~p~ILILDEaTSaLD~~te~~I~~~l~~~~~-~~TvI~--IaHrlsti~~-~D 540 (597)
||||||.++|. + | |++||+++...+.+.|.++.+ ++|+++ +||.++.+.. |+
T Consensus 403 ~G~~~R~~~ai----------~-E-~~GlDp~~~~~~~~~l~~~~~~~~tii~~~~sH~l~ei~~~~g 458 (511)
T 2oap_1 403 GNTRLRRTKEV----------N-E-ILGIDPVDKNLLVNQFVKWDPKEDKHIEVSMPKKLEKMADFLG 458 (511)
T ss_dssp SSCEEEEEEEE----------E-E-EEECCSSSSCCEEEEEEEEETTTTEEEECSCCTHHHHHHHHHT
T ss_pred CCCceEEEEEE----------E-E-EcCcccCCCeEEEEEeEEEcccCCEEEEcccHHHHHHHHHHcC
Confidence 99999988752 1 6 999999887777777766544 678875 8999998864 65
No 134
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=99.37 E-value=6.6e-13 Score=137.44 Aligned_cols=163 Identities=15% Similarity=0.095 Sum_probs=107.5
Q ss_pred EEcCCcEEEEEcCCCCCHHHHHHHHhccc-cCCceEEEcceeCCCCChH----HHhcC--cEEEeCCCCCCC-ccHHhhc
Q psy1502 363 TIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EVEGVIKIDDIDTEDVPLS----KLRSN--ISIIPQDPVLFS-GTLRKNL 434 (597)
Q Consensus 363 ~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I~idg~di~~~~~~----~lr~~--I~~V~Q~~~LF~-gTI~eNI 434 (597)
..++|+.++|||||||||||+++.|+|++ +.+|+|.++|.|+...... .|+++ +.+++|+..++. .|+++|+
T Consensus 125 ~~~~g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~~~~p~~~v~e~l 204 (328)
T 3e70_C 125 KAEKPYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYGADPAAVAYDAI 204 (328)
T ss_dssp SSCSSEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCTTCCHHHHHHHHH
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEeecccccchHHHHHHHHHHcCceEEeccccCCHHHHHHHHH
Confidence 34789999999999999999999999987 5789999999999776532 34444 559999988875 5888887
Q ss_pred ccCCCCChHHHHHHHHHhcHHHHHHhcCCCchhh-hCCCC--CCChhHHHHHHHHHHHccCCCEEEeecCCCCCCHHHHH
Q psy1502 435 DPFEKYPDYVLWTALQEVELKDMIMEGAGLNMTV-YEGGT--NFSVGQRQLICLARAIVRNNVILVLDEATANVDPKTDL 511 (597)
Q Consensus 435 ~~~~~~~~e~i~~a~~~a~l~~fI~~l~GldT~v-ge~G~--~LSGGQrQRIaIARAll~~p~ILILDEaTSaLD~~te~ 511 (597)
.++. . .++|..+ ..-|. .-..=.++.-.++|++..++++++||.+|. .|...
T Consensus 205 ~~~~-----------~-----------~~~d~vliDtaG~~~~~~~l~~eL~~i~ral~~de~llvLDa~t~-~~~~~-- 259 (328)
T 3e70_C 205 QHAK-----------A-----------RGIDVVLIDTAGRSETNRNLMDEMKKIARVTKPNLVIFVGDALAG-NAIVE-- 259 (328)
T ss_dssp HHHH-----------H-----------HTCSEEEEEECCSCCTTTCHHHHHHHHHHHHCCSEEEEEEEGGGT-THHHH--
T ss_pred HHHH-----------h-----------ccchhhHHhhccchhHHHHHHHHHHHHHHHhcCCCCEEEEecHHH-HHHHH--
Confidence 5310 0 1122111 10110 001112344569999999999999996665 33322
Q ss_pred HHHHHHHHhcCCcEEEEeccCchhH----------hhcCEEEEEeCCeEEE
Q psy1502 512 LIQRTIRKKFADCTVLTIAHRLHTI----------MDSDKVLVMDSGVAVV 552 (597)
Q Consensus 512 ~I~~~l~~~~~~~TvI~IaHrlsti----------~~~D~Iivl~~G~Ive 552 (597)
..+.+.+. .+.|.|++||--.+. ...-.|..+..|+-++
T Consensus 260 -~~~~~~~~-~~it~iilTKlD~~a~~G~~l~~~~~~~~pi~~i~~Ge~v~ 308 (328)
T 3e70_C 260 -QARQFNEA-VKIDGIILTKLDADARGGAALSISYVIDAPILFVGVGQGYD 308 (328)
T ss_dssp -HHHHHHHH-SCCCEEEEECGGGCSCCHHHHHHHHHHTCCEEEEECSSSTT
T ss_pred -HHHHHHHh-cCCCEEEEeCcCCccchhHHHHHHHHHCCCEEEEeCCCCcc
Confidence 22333332 378999999944321 1235788888887665
No 135
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=99.37 E-value=1.7e-15 Score=144.31 Aligned_cols=154 Identities=13% Similarity=0.082 Sum_probs=104.0
Q ss_pred CcEEEEEcCCCCCHHHHHHHHhccccCCceEEEcceeCCCCChHHHhcCcEEEeCCCCCC-CccHHhhcccCCCCChHHH
Q psy1502 367 KEKIGIVGRTGAGKSSLIAAIFRLAEVEGVIKIDDIDTEDVPLSKLRSNISIIPQDPVLF-SGTLRKNLDPFEKYPDYVL 445 (597)
Q Consensus 367 G~~vaIVG~SGsGKSTL~~LL~~l~~~~G~I~idg~di~~~~~~~lr~~I~~V~Q~~~LF-~gTI~eNI~~~~~~~~e~i 445 (597)
|+.++|+||||||||||++.|++ +.+|.+.+||.++... ..+++++|....+ +.|+++|+..
T Consensus 2 g~ii~l~G~~GaGKSTl~~~L~~--~~~g~~~i~~d~~~~~------~~~~~~~~~~~~~~~~~~~~~l~~--------- 64 (189)
T 2bdt_A 2 KKLYIITGPAGVGKSTTCKRLAA--QLDNSAYIEGDIINHM------VVGGYRPPWESDELLALTWKNITD--------- 64 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH--HSSSEEEEEHHHHHTT------CCTTCCCGGGCHHHHHHHHHHHHH---------
T ss_pred CeEEEEECCCCCcHHHHHHHHhc--ccCCeEEEcccchhhh------hccccccCccchhHHHHHHHHHHH---------
Confidence 68899999999999999999987 5679999998765432 2467777765332 2355555532
Q ss_pred HHHHHHhcHHHHHHhcCCCchhh----hC----CCCCC--ChhHHHHHHHHH------HHccCCCEEEeecCCCCCCHHH
Q psy1502 446 WTALQEVELKDMIMEGAGLNMTV----YE----GGTNF--SVGQRQLICLAR------AIVRNNVILVLDEATANVDPKT 509 (597)
Q Consensus 446 ~~a~~~a~l~~fI~~l~GldT~v----ge----~G~~L--SGGQrQRIaIAR------All~~p~ILILDEaTSaLD~~t 509 (597)
.++ .+.. .|.+..+ +. .-..+ |+|++|++.++. +++++|+...+|+ ++|++.
T Consensus 65 --~~~-----~~~~--~~~~~ild~~~~~~~~~~~~~~~~s~g~~~~~~~i~L~~~~e~l~~R~~~r~~d~---~ld~~~ 132 (189)
T 2bdt_A 65 --LTV-----NFLL--AQNDVVLDYIAFPDEAEALAQTVQAKVDDVEIRFIILWTNREELLRRDALRKKDE---QMGERC 132 (189)
T ss_dssp --HHH-----HHHH--TTCEEEEESCCCHHHHHHHHHHHHHHCSSEEEEEEEEECCHHHHHHHTTTSCC-------CGGG
T ss_pred --HHH-----HHHh--cCCcEEEeeccCHHHHHHHHHHHHhcccCCCeEEEEEeCCHHHHHHHHHhccccc---cCCHHH
Confidence 010 1111 1111111 10 00124 889888988888 8999998888884 799987
Q ss_pred HHHHHHHHHHhcC-CcEEEEeccC-chhHhh-cCEEEEEeCCeEEE
Q psy1502 510 DLLIQRTIRKKFA-DCTVLTIAHR-LHTIMD-SDKVLVMDSGVAVV 552 (597)
Q Consensus 510 e~~I~~~l~~~~~-~~TvI~IaHr-lsti~~-~D~Iivl~~G~Ive 552 (597)
... .+.+..+.. +.|+|..+|. ++.+.. ||+|+ ++|+++.
T Consensus 133 ~~~-~~~~~~~~~~~~~ii~tsh~~~~~~e~~~~~i~--~~g~~~~ 175 (189)
T 2bdt_A 133 LEL-VEEFESKGIDERYFYNTSHLQPTNLNDIVKNLK--TNPRFIF 175 (189)
T ss_dssp GHH-HHHHHHTTCCTTSEEECSSSCGGGHHHHHHHHH--HCGGGSC
T ss_pred HHH-HHHHhhcCCCccEEEeCCCCChhhHHHHHHHHh--hCCcEEE
Confidence 766 777776643 5799999999 988875 99999 9999875
No 136
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=99.36 E-value=9.3e-13 Score=139.84 Aligned_cols=146 Identities=16% Similarity=0.136 Sum_probs=95.8
Q ss_pred EEcCCcEEEEEcCCCCCHHHHHHHHh--ccccC------CceEEEcceeCC-CCChHHHhcCcEEEeCCCCCCCccHHhh
Q psy1502 363 TIHPKEKIGIVGRTGAGKSSLIAAIF--RLAEV------EGVIKIDDIDTE-DVPLSKLRSNISIIPQDPVLFSGTLRKN 433 (597)
Q Consensus 363 ~I~~G~~vaIVG~SGsGKSTL~~LL~--~l~~~------~G~I~idg~di~-~~~~~~lr~~I~~V~Q~~~LF~gTI~eN 433 (597)
-|++|+.++|+||||||||||+..|+ +..|+ .+.+++|+.+.. ......+++++++.+| ++.+|
T Consensus 174 GI~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl~~~a~~~gl~~~-------~vlen 246 (400)
T 3lda_A 174 GVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRLVSIAQRFGLDPD-------DALNN 246 (400)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHH-------HHHHT
T ss_pred CcCCCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHHHHHHHHcCCChH-------hHhhc
Confidence 58999999999999999999999554 55542 348899987632 1223334566777665 57788
Q ss_pred cccCCCCChHHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHHHHHH--ccCCCEEEeecCCCCCCHHHH-
Q psy1502 434 LDPFEKYPDYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAI--VRNNVILVLDEATANVDPKTD- 510 (597)
Q Consensus 434 I~~~~~~~~e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaIARAl--l~~p~ILILDEaTSaLD~~te- 510 (597)
+.+....+.++..+.+ .-++++ -.+|+++++||+|+.+|++..
T Consensus 247 i~~~~~~~~~~~~~~l----------------------------------~~~~~~l~~~~~~llVIDs~t~~~~~~~sg 292 (400)
T 3lda_A 247 VAYARAYNADHQLRLL----------------------------------DAAAQMMSESRFSLIVVDSVMALYRTDFSG 292 (400)
T ss_dssp EEEEECCSHHHHHHHH----------------------------------HHHHHHHHHSCEEEEEEETGGGGCC-----
T ss_pred EEEeccCChHHHHHHH----------------------------------HHHHHHHHhcCCceEEecchhhhCchhhcC
Confidence 8764443333322222 112222 147999999999999997643
Q ss_pred -----------HHHHHHHHHhcC--CcEEEEeccCch-------------------hHhh-cCEEEEEeCCe
Q psy1502 511 -----------LLIQRTIRKKFA--DCTVLTIAHRLH-------------------TIMD-SDKVLVMDSGV 549 (597)
Q Consensus 511 -----------~~I~~~l~~~~~--~~TvI~IaHrls-------------------ti~~-~D~Iivl~~G~ 549 (597)
..+.+.|.++.+ +.|+|+|+|-.+ .+.+ ||.+++|++|+
T Consensus 293 ~g~l~~Rq~~l~~il~~L~~lake~gitVIlv~Hv~~~~~g~~~~~g~~~~p~gg~~l~~~ad~vl~L~~~~ 364 (400)
T 3lda_A 293 RGELSARQMHLAKFMRALQRLADQFGVAVVVTNQVVAQVDGGMAFNPDPKKPIGGNIMAYSSTTRLGFKKGK 364 (400)
T ss_dssp -CCHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEC--------------------CHHHHHCSEEEEEEECS
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHcCCEEEEEEeecccCCccccccCCCccCCchhHHHHhcceEEEEEecC
Confidence 456666666543 789999999832 2333 79999998763
No 137
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=99.35 E-value=1.2e-14 Score=144.65 Aligned_cols=157 Identities=9% Similarity=0.020 Sum_probs=103.1
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHh---ccc-cCCceEEEcceeCCCCChHHHhcCcEEEeCCCCCCC-ccHHhhcccC---
Q psy1502 366 PKEKIGIVGRTGAGKSSLIAAIF---RLA-EVEGVIKIDDIDTEDVPLSKLRSNISIIPQDPVLFS-GTLRKNLDPF--- 437 (597)
Q Consensus 366 ~G~~vaIVG~SGsGKSTL~~LL~---~l~-~~~G~I~idg~di~~~~~~~lr~~I~~V~Q~~~LF~-gTI~eNI~~~--- 437 (597)
+++.++|+||+|||||||+++|+ |+. ++.|+|.++|.+.. ..+...+..++|++.++. .|+.+|+...
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~lg~~~~~~G~i~~~~~~~~----~~~~~~i~~~~~~~~~~~~~~v~~~l~~~l~~ 101 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNFGLQHLSSGHFLRENIKAS----TEVGEMAKQYIEKSLLVPDHVITRLMMSELEN 101 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCCCCEEHHHHHHHHHHTT----CHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCeEecHHHHHHHHHhcC----ChHHHHHHHHHHcCCCCCHHHHHHHHHHHHHh
Confidence 47999999999999999999999 876 46799998887642 234556677778777665 4888887420
Q ss_pred --------CCC--ChHHHHHHHHHhcHHHHHHhcCCC--------------chhhhCCCCCCChhHHHHHHHHHHH-ccC
Q psy1502 438 --------EKY--PDYVLWTALQEVELKDMIMEGAGL--------------NMTVYEGGTNFSVGQRQLICLARAI-VRN 492 (597)
Q Consensus 438 --------~~~--~~e~i~~a~~~a~l~~fI~~l~Gl--------------dT~vge~G~~LSGGQrQRIaIARAl-l~~ 492 (597)
... +.++.... ..+.+. +-........||| |+ ||+ +.+
T Consensus 102 ~~~~~~il~g~~~~~~~~~~l----------~~~~~~~~vi~L~~~~~~~l~r~~~r~~~~lSg----rv---~al~~~~ 164 (246)
T 2bbw_A 102 RRGQHWLLDGFPRTLGQAEAL----------DKICEVDLVISLNIPFETLKDRLSRRWIHPPSG----RV---YNLDFNP 164 (246)
T ss_dssp CTTSCEEEESCCCSHHHHHHH----------HTTCCCCEEEEEECCHHHHHHHHHTEEEETTTT----EE---EETTTSC
T ss_pred cCCCeEEEECCCCCHHHHHHH----------HhhcCCCEEEEEECCHHHHHHHHHcCCCcCCCC----Cc---cccccCC
Confidence 011 11111111 111111 1112333457898 66 888 999
Q ss_pred CCEEEee----cCCCCCCHHHHHHHHHHHHHhcCCcEEEEeccCchhHhhcCEEEEEeCC
Q psy1502 493 NVILVLD----EATANVDPKTDLLIQRTIRKKFADCTVLTIAHRLHTIMDSDKVLVMDSG 548 (597)
Q Consensus 493 p~ILILD----EaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrlsti~~~D~Iivl~~G 548 (597)
|++++|| |||++||..++..+.+.+.++.+... .-+....+.++++++|..
T Consensus 165 P~~lllD~~~~EP~~~ld~~~~~~i~~~l~~~~~~~~-----~v~~~~~~~~~~~~id~~ 219 (246)
T 2bbw_A 165 PHVHGIDDVTGEPLVQQEDDKPEAVAARLRQYKDVAK-----PVIELYKSRGVLHQFSGT 219 (246)
T ss_dssp CSSTTBCTTTCCBCBCCGGGSHHHHHHHHHHHHHHHH-----HHHHHHHHTTCEEEEECS
T ss_pred CcccccccccccccccCCCCcHHHHHHHHHHHHHhHH-----HHHHHHhhcCcEEEECCC
Confidence 9999999 99999999999999998877643210 001122334567777653
No 138
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=99.35 E-value=6.7e-13 Score=121.78 Aligned_cols=91 Identities=20% Similarity=0.170 Sum_probs=69.3
Q ss_pred cceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccccCCc--eEEEcceeCCCCChHHHhcCcEEEeCCCCCCCccHHhh
Q psy1502 356 VIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAEVEG--VIKIDDIDTEDVPLSKLRSNISIIPQDPVLFSGTLRKN 433 (597)
Q Consensus 356 vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~~~~G--~I~idg~di~~~~~~~lr~~I~~V~Q~~~LF~gTI~eN 433 (597)
+|+++ +|+.++|+||+|||||||++++++.+.++| .+.+++.++...
T Consensus 30 ~l~~~-----~g~~~~l~G~~G~GKTtL~~~i~~~~~~~g~~~~~~~~~~~~~~-------------------------- 78 (149)
T 2kjq_A 30 VLRHK-----HGQFIYVWGEEGAGKSHLLQAWVAQALEAGKNAAYIDAASMPLT-------------------------- 78 (149)
T ss_dssp HCCCC-----CCSEEEEESSSTTTTCHHHHHHHHHHHTTTCCEEEEETTTSCCC--------------------------
T ss_pred HHHhc-----CCCEEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEcHHHhhHH--------------------------
Confidence 57766 899999999999999999999999876567 666655443211
Q ss_pred cccCCCCChHHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHHHHHHccCCCEEEeecCCCCCCHHHHHHH
Q psy1502 434 LDPFEKYPDYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATANVDPKTDLLI 513 (597)
Q Consensus 434 I~~~~~~~~e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaIARAll~~p~ILILDEaTSaLD~~te~~I 513 (597)
+++.+|++|+|||+++ +|...+..+
T Consensus 79 ------------------------------------------------------~~~~~~~lLilDE~~~-~~~~~~~~l 103 (149)
T 2kjq_A 79 ------------------------------------------------------DAAFEAEYLAVDQVEK-LGNEEQALL 103 (149)
T ss_dssp ------------------------------------------------------GGGGGCSEEEEESTTC-CCSHHHHHH
T ss_pred ------------------------------------------------------HHHhCCCEEEEeCccc-cChHHHHHH
Confidence 2467899999999998 555557778
Q ss_pred HHHHHHhcC-CcE-EEEeccC
Q psy1502 514 QRTIRKKFA-DCT-VLTIAHR 532 (597)
Q Consensus 514 ~~~l~~~~~-~~T-vI~IaHr 532 (597)
.+.++++.. ++| +|+++|+
T Consensus 104 ~~li~~~~~~g~~~iiits~~ 124 (149)
T 2kjq_A 104 FSIFNRFRNSGKGFLLLGSEY 124 (149)
T ss_dssp HHHHHHHHHHTCCEEEEEESS
T ss_pred HHHHHHHHHcCCcEEEEECCC
Confidence 888876543 577 7776765
No 139
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=99.34 E-value=3.4e-15 Score=159.45 Aligned_cols=137 Identities=18% Similarity=0.158 Sum_probs=88.8
Q ss_pred EEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc-cCCceEEEcceeCCCCC-----hHHHhcCc
Q psy1502 343 FQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EVEGVIKIDDIDTEDVP-----LSKLRSNI 416 (597)
Q Consensus 343 f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I~idg~di~~~~-----~~~lr~~I 416 (597)
++|++|.|+ ...+|+++ + .++|+.++|+||||||||||+++|+|++ +++|+|.++|.++. +. ...++.++
T Consensus 146 l~~Lg~~~~-~~~~L~~l-~-~~~ggii~I~GpnGSGKTTlL~allg~l~~~~g~I~~~ed~ie-~~~~~~~q~~v~~~~ 221 (418)
T 1p9r_A 146 LHSLGMTAH-NHDNFRRL-I-KRPHGIILVTGPTGSGKSTTLYAGLQELNSSERNILTVEDPIE-FDIDGIGQTQVNPRV 221 (418)
T ss_dssp GGGSCCCHH-HHHHHHHH-H-TSSSEEEEEECSTTSCHHHHHHHHHHHHCCTTSCEEEEESSCC-SCCSSSEEEECBGGG
T ss_pred HHHcCCCHH-HHHHHHHH-H-HhcCCeEEEECCCCCCHHHHHHHHHhhcCCCCCEEEEecccch-hccCCcceEEEcccc
Confidence 344444442 12367777 4 3899999999999999999999999987 46899999998874 22 12234556
Q ss_pred EEEe---------CCCCCC--C-----ccHHhhcccC---C------CC-ChHHHHHHHHHhcHHHHHHhcCCCchhhhC
Q psy1502 417 SIIP---------QDPVLF--S-----GTLRKNLDPF---E------KY-PDYVLWTALQEVELKDMIMEGAGLNMTVYE 470 (597)
Q Consensus 417 ~~V~---------Q~~~LF--~-----gTI~eNI~~~---~------~~-~~e~i~~a~~~a~l~~fI~~l~GldT~vge 470 (597)
++++ |+|.++ . .|+.+|+... . .. +..+..+.+... |++...
T Consensus 222 g~~f~~~lr~~Lrq~pd~i~vgEiRd~et~~~~l~a~~tGhlv~~tlh~~~~~~~i~rL~~l----------gl~~~~-- 289 (418)
T 1p9r_A 222 DMTFARGLRAILRQDPDVVMVGEIRDLETAQIAVQASLTGHLVMSTLHTNTAVGAVTRLRDM----------GIEPFL-- 289 (418)
T ss_dssp TBCHHHHHHHHGGGCCSEEEESCCCSHHHHHHHHHHHHTTCEEEEEECCSSSHHHHHHHHHH----------TCCHHH--
T ss_pred CcCHHHHHHHHhccCCCeEEEcCcCCHHHHHHHHHHHHhCCCcccccchhhHHHHHHHHHHc----------CCcHHH--
Confidence 5544 777653 2 3677776421 0 01 112222222222 333222
Q ss_pred CCCCCChhHHHHHHHHHHHccCCCEEE
Q psy1502 471 GGTNFSVGQRQLICLARAIVRNNVILV 497 (597)
Q Consensus 471 ~G~~LSGGQrQRIaIARAll~~p~ILI 497 (597)
....|||||+|| ||||+..+|++..
T Consensus 290 ~~~~LSgg~~QR--LaraL~~~p~~~~ 314 (418)
T 1p9r_A 290 ISSSLLGVLAQR--LVRTLCPDCKEPY 314 (418)
T ss_dssp HHHHEEEEEEEE--EEEEECTTTCEEE
T ss_pred HHHHHHHHHHHH--hhhhhcCCCCccC
Confidence 345899999999 9999999999875
No 140
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=99.32 E-value=6.1e-13 Score=138.69 Aligned_cols=121 Identities=12% Similarity=0.046 Sum_probs=80.6
Q ss_pred cceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc--cCCceEEEc-ceeCCCCChHHHhcCcEEEeCCCCCCCc-cHH
Q psy1502 356 VIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA--EVEGVIKID-DIDTEDVPLSKLRSNISIIPQDPVLFSG-TLR 431 (597)
Q Consensus 356 vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~--~~~G~I~id-g~di~~~~~~~lr~~I~~V~Q~~~LF~g-TI~ 431 (597)
-++++++. .+|++++|+||||||||||+++|+|+. +..|+|.++ |.+.. ...+.+++++||++.+++. |++
T Consensus 205 gl~~L~~~-~~G~~~~lvG~sG~GKSTLln~L~g~~~~~~~G~I~~~~G~g~~----tt~~~~i~~v~q~~~l~dtpgv~ 279 (358)
T 2rcn_A 205 GLKPLEEA-LTGRISIFAGQSGVGKSSLLNALLGLQNEILTNDVSNVSGLGQH----TTTAARLYHFPHGGDVIDSPGVR 279 (358)
T ss_dssp THHHHHHH-HTTSEEEEECCTTSSHHHHHHHHHCCSSCCCCC-----------------CCCEEEECTTSCEEEECHHHH
T ss_pred CHHHHHHh-cCCCEEEEECCCCccHHHHHHHHhccccccccCCccccCCCCcc----ceEEEEEEEECCCCEecCcccHH
Confidence 46777764 589999999999999999999999976 467999987 76643 2346789999999998875 899
Q ss_pred hhcccCCCCChHHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHHHHHHc
Q psy1502 432 KNLDPFEKYPDYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIV 490 (597)
Q Consensus 432 eNI~~~~~~~~e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaIARAll 490 (597)
++-.. ..+.+++.+.. .++.+. .|+....+....+|| ||+||++||++++
T Consensus 280 e~~l~--~l~~~e~~~~~-----~e~l~~-~gl~~f~~~~~~~lS-G~~~r~ala~gli 329 (358)
T 2rcn_A 280 EFGLW--HLEPEQITQGF-----VEFHDY-LGHCKYRDCKHDADP-GCAIREAVENGAI 329 (358)
T ss_dssp TCCCC--CCCHHHHHHTS-----GGGGGG-TTCSSSTTCCSSSCT-TCHHHHHHHHTSS
T ss_pred Hhhhc--CCCHHHHHHHH-----HHHHHH-cCCchhcCCCcccCC-HHHHHHHHHhcCC
Confidence 97432 34444443221 122222 355555566677899 9999999999863
No 141
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=99.25 E-value=4.6e-12 Score=119.47 Aligned_cols=111 Identities=20% Similarity=0.189 Sum_probs=74.2
Q ss_pred eEEEcCCcEEEEEcCCCCCHHHHHHHHhcccc-CCceEEEcceeCCCCChHHHhcCcEEEeCCCCCCCccHHhhcccCCC
Q psy1502 361 NITIHPKEKIGIVGRTGAGKSSLIAAIFRLAE-VEGVIKIDDIDTEDVPLSKLRSNISIIPQDPVLFSGTLRKNLDPFEK 439 (597)
Q Consensus 361 sl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~~-~~G~I~idg~di~~~~~~~lr~~I~~V~Q~~~LF~gTI~eNI~~~~~ 439 (597)
+|++++|+.++|+||+|+|||||++.+++... .+|...+ |+
T Consensus 32 ~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~~------------------~~-------------------- 73 (180)
T 3ec2_A 32 NFNPEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIRGY------------------FF-------------------- 73 (180)
T ss_dssp SCCGGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCCCC------------------EE--------------------
T ss_pred hccccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCCeEE------------------EE--------------------
Confidence 56788999999999999999999999999763 5553111 11
Q ss_pred CChHHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHHHHHHccCCCEEEeecCCC-CCCHHHHHHHHHHHH
Q psy1502 440 YPDYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATA-NVDPKTDLLIQRTIR 518 (597)
Q Consensus 440 ~~~e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaIARAll~~p~ILILDEaTS-aLD~~te~~I~~~l~ 518 (597)
+-.++.+.+. ... ..+... -+...+.+|++|+||||++ ++|+.....+.+.++
T Consensus 74 -~~~~~~~~~~--------~~~-------~~~~~~----------~~~~~~~~~~llilDE~~~~~~~~~~~~~l~~ll~ 127 (180)
T 3ec2_A 74 -DTKDLIFRLK--------HLM-------DEGKDT----------KFLKTVLNSPVLVLDDLGSERLSDWQRELISYIIT 127 (180)
T ss_dssp -EHHHHHHHHH--------HHH-------HHTCCS----------HHHHHHHTCSEEEEETCSSSCCCHHHHHHHHHHHH
T ss_pred -EHHHHHHHHH--------HHh-------cCchHH----------HHHHHhcCCCEEEEeCCCCCcCCHHHHHHHHHHHH
Confidence 1111111111 000 000000 1222355999999999996 899999888888887
Q ss_pred Hhc-CCcEEEEeccCchh
Q psy1502 519 KKF-ADCTVLTIAHRLHT 535 (597)
Q Consensus 519 ~~~-~~~TvI~IaHrlst 535 (597)
... .++|+|++||+...
T Consensus 128 ~~~~~~~~ii~tsn~~~~ 145 (180)
T 3ec2_A 128 YRYNNLKSTIITTNYSLQ 145 (180)
T ss_dssp HHHHTTCEEEEECCCCSC
T ss_pred HHHHcCCCEEEEcCCChh
Confidence 665 68899999998743
No 142
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=99.25 E-value=1.4e-14 Score=146.69 Aligned_cols=144 Identities=17% Similarity=0.134 Sum_probs=104.1
Q ss_pred CccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccccCCceEEEcceeCCCCChHHHhcCcEEEeCCC-CCCC-ccHH
Q psy1502 354 PRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAEVEGVIKIDDIDTEDVPLSKLRSNISIIPQDP-VLFS-GTLR 431 (597)
Q Consensus 354 ~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~~~~G~I~idg~di~~~~~~~lr~~I~~V~Q~~-~LF~-gTI~ 431 (597)
+.+++++++++++| ++|+||+|||||||++.|++.... |.|.++|.++.+......++++++++|++ ..+. -++.
T Consensus 33 ~~~l~~~~l~~~~G--vlL~Gp~GtGKTtLakala~~~~~-~~i~i~g~~l~~~~~~~~~~~i~~vf~~a~~~~p~i~~~ 109 (274)
T 2x8a_A 33 PDQFKALGLVTPAG--VLLAGPPGCGKTLLAKAVANESGL-NFISVKGPELLNMYVGESERAVRQVFQRAKNSAPCVIFF 109 (274)
T ss_dssp HHHHHHTTCCCCSE--EEEESSTTSCHHHHHHHHHHHTTC-EEEEEETTTTCSSTTHHHHHHHHHHHHHHHHTCSEEEEE
T ss_pred HHHHHHcCCCCCCe--EEEECCCCCcHHHHHHHHHHHcCC-CEEEEEcHHHHhhhhhHHHHHHHHHHHHHHhcCCCeEee
Confidence 45899999999999 999999999999999999997644 79999999987766666678899999986 3443 4778
Q ss_pred hhcccCCCC-ChHHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHHHHHHccCCCEEEeecCCC-------
Q psy1502 432 KNLDPFEKY-PDYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATA------- 503 (597)
Q Consensus 432 eNI~~~~~~-~~e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaIARAll~~p~ILILDEaTS------- 503 (597)
||+...... ...+. . .....+.+.-..|||||+||..|++|+..+|++| |||+.
T Consensus 110 Deid~~~~~r~~~~~-~---------------~~~~~~~~~l~~Lsgg~~~~~~i~ia~tn~p~~L--D~al~r~gRfd~ 171 (274)
T 2x8a_A 110 DEVDALCPRRSDRET-G---------------ASVRVVNQLLTEMDGLEARQQVFIMAATNRPDII--DPAILRPGRLDK 171 (274)
T ss_dssp ETCTTTCC-------------------------CTTHHHHHHHHHHTCCSTTCEEEEEEESCGGGS--CHHHHSTTSSCE
T ss_pred ehhhhhhcccCCCcc-h---------------HHHHHHHHHHHhhhcccccCCEEEEeecCChhhC--CHhhcCcccCCe
Confidence 888653211 11110 0 0111112222368999999999999999999975 99974
Q ss_pred -----CCCHHHHHHHHHHHH
Q psy1502 504 -----NVDPKTDLLIQRTIR 518 (597)
Q Consensus 504 -----aLD~~te~~I~~~l~ 518 (597)
.-|.+....|.+.+.
T Consensus 172 ~i~~~~P~~~~r~~il~~~~ 191 (274)
T 2x8a_A 172 TLFVGLPPPADRLAILKTIT 191 (274)
T ss_dssp EEECCSCCHHHHHHHHHHHT
T ss_pred EEEeCCcCHHHHHHHHHHHH
Confidence 336777777766543
No 143
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=99.23 E-value=7.9e-12 Score=120.02 Aligned_cols=137 Identities=17% Similarity=0.119 Sum_probs=88.3
Q ss_pred eEEEcCCcEEEEEcCCCCCHHHHHHHHhccccCCceEEEcceeCCCCChHHHhcCcEEEeCCCCCCCc-cHHhhcccC--
Q psy1502 361 NITIHPKEKIGIVGRTGAGKSSLIAAIFRLAEVEGVIKIDDIDTEDVPLSKLRSNISIIPQDPVLFSG-TLRKNLDPF-- 437 (597)
Q Consensus 361 sl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~~~~G~I~idg~di~~~~~~~lr~~I~~V~Q~~~LF~g-TI~eNI~~~-- 437 (597)
|+++++|+.++|+||||||||||+++|+|++| .+.+++.++........+..++|++|++.+|.. +..+|+...
T Consensus 1 s~~m~~g~ii~l~Gp~GsGKSTl~~~L~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (205)
T 3tr0_A 1 SNAMNKANLFIISAPSGAGKTSLVRALVKALA---EIKISISHTTRPKRPGDQEGVDYFFIDETRFQAMVKEGAFLEHAT 77 (205)
T ss_dssp ----CCCCEEEEECCTTSCHHHHHHHHHHHSS---SEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHHTCEEEEEE
T ss_pred CCcCCCCcEEEEECcCCCCHHHHHHHHHhhCC---CeEEeceeccCCCchhHhcCceEEeccHHHHHHHHhcCcEEeeee
Confidence 57889999999999999999999999999875 688888887766655567889999999998864 556665321
Q ss_pred --C---CCChHHHHHHHHHh----------cHHHHHHhc-CC------------CchhhhCCCCCCChhHHHHHHHHHHH
Q psy1502 438 --E---KYPDYVLWTALQEV----------ELKDMIMEG-AG------------LNMTVYEGGTNFSVGQRQLICLARAI 489 (597)
Q Consensus 438 --~---~~~~e~i~~a~~~a----------~l~~fI~~l-~G------------ldT~vge~G~~LSGGQrQRIaIARAl 489 (597)
. ..+.+++.++++.. ++....... +. +...+-++|..-....++|++-++..
T Consensus 78 ~~~~~~~~~~~~i~~~l~~g~~vi~d~~~~~~~~~~~~~~~~~~v~~~~~~~e~l~~Rl~~R~~~~~~~i~~rl~~~~~~ 157 (205)
T 3tr0_A 78 IYERHYGTEKDWVLRQLKAGRDVLLEIDWQGARQIRELFPPALSIFILPPSIEALRERLIKRRQDDTAIIEQRLALAREE 157 (205)
T ss_dssp ETTEEEEEEHHHHHHHHHTTCEEEEECCHHHHHHHHHHCTTCEEEEEECSCHHHHHHHHHTCTTSCSSTHHHHHHHHHHH
T ss_pred eecccccchHHHHHHHHHcCCeEEEEECHHHHHHHHHhCCCcEEEEEECcCHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 1 12334555554432 222222111 11 11224456655556678888888776
Q ss_pred c---cCCCEEEeec
Q psy1502 490 V---RNNVILVLDE 500 (597)
Q Consensus 490 l---~~p~ILILDE 500 (597)
. +.++.+|.++
T Consensus 158 ~~~~~~~d~vi~n~ 171 (205)
T 3tr0_A 158 MAHYKEFDYLVVND 171 (205)
T ss_dssp HTTGGGCSEEEECS
T ss_pred HhcccCCCEEEECC
Confidence 5 3567777654
No 144
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=99.23 E-value=2.2e-12 Score=137.54 Aligned_cols=153 Identities=19% Similarity=0.196 Sum_probs=94.8
Q ss_pred cceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccccCCceEEEcceeCCCCChHHHhcCcEEEeCCCCCCCccHHhhcc
Q psy1502 356 VIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAEVEGVIKIDDIDTEDVPLSKLRSNISIIPQDPVLFSGTLRKNLD 435 (597)
Q Consensus 356 vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~~~~G~I~idg~di~~~~~~~lr~~I~~V~Q~~~LF~gTI~eNI~ 435 (597)
--++++|+++.|+.++|||++|||||||++.|++..+ .+.+.+... +...+++|+|+. -..-++.|+..
T Consensus 146 ~~~~i~lelk~g~~VgLVG~~gAGKSTLL~~Lsg~~~-----~i~~~~ftT-----l~p~~G~V~~~~-~~~~~l~DtpG 214 (416)
T 1udx_A 146 EKRRLRLELMLIADVGLVGYPNAGKSSLLAAMTRAHP-----KIAPYPFTT-----LSPNLGVVEVSE-EERFTLADIPG 214 (416)
T ss_dssp CEEEEEEEECCSCSEEEECCGGGCHHHHHHHHCSSCC-----EECCCTTCS-----SCCEEEEEECSS-SCEEEEEECCC
T ss_pred eEeeeeeEEcCCCEEEEECCCCCcHHHHHHHHHcCCc-----cccCcccce-----ecceeeEEEecC-cceEEEEeccc
Confidence 3579999999999999999999999999999999755 344444433 345688888875 11223444432
Q ss_pred cCCC------CChHHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHHHHHHccCCCEEEeecCCCCCCHHH
Q psy1502 436 PFEK------YPDYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATANVDPKT 509 (597)
Q Consensus 436 ~~~~------~~~e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaIARAll~~p~ILILDEaTSaLD~~t 509 (597)
+.+. .... ..+..+.+. .. +.=+|-. .+.-.+||+||+||.++||+|..+|.|+++ +.+|...
T Consensus 215 li~~a~~~~~L~~~-fl~~~era~--~l---L~vvDls-~~~~~~ls~g~~el~~la~aL~~~P~ILVl----NKlDl~~ 283 (416)
T 1udx_A 215 IIEGASEGKGLGLE-FLRHIARTR--VL---LYVLDAA-DEPLKTLETLRKEVGAYDPALLRRPSLVAL----NKVDLLE 283 (416)
T ss_dssp CCCCGGGSCCSCHH-HHHHHTSSS--EE---EEEEETT-SCHHHHHHHHHHHHHHHCHHHHHSCEEEEE----ECCTTSC
T ss_pred cccchhhhhhhhHH-HHHHHHHHH--hh---hEEeCCc-cCCHHHHHHHHHHHHHHhHHhhcCCEEEEE----ECCChhh
Confidence 2111 1111 111111110 00 0111111 112246999999999999999999999999 8899876
Q ss_pred HHHHHHHHHHhc--CCcEEEEecc
Q psy1502 510 DLLIQRTIRKKF--ADCTVLTIAH 531 (597)
Q Consensus 510 e~~I~~~l~~~~--~~~TvI~IaH 531 (597)
. ...+.+.+.. .+.+++.||.
T Consensus 284 ~-~~~~~l~~~l~~~g~~vi~iSA 306 (416)
T 1udx_A 284 E-EAVKALADALAREGLAVLPVSA 306 (416)
T ss_dssp H-HHHHHHHHHHHTTTSCEEECCT
T ss_pred H-HHHHHHHHHHHhcCCeEEEEEC
Confidence 5 3334443332 2557776653
No 145
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=99.23 E-value=1.7e-13 Score=134.07 Aligned_cols=127 Identities=17% Similarity=0.130 Sum_probs=100.9
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHhccc----cCCceEEE--------cceeCCC-CChHHHhcCcEEEeCCC------CCC
Q psy1502 366 PKEKIGIVGRTGAGKSSLIAAIFRLA----EVEGVIKI--------DDIDTED-VPLSKLRSNISIIPQDP------VLF 426 (597)
Q Consensus 366 ~G~~vaIVG~SGsGKSTL~~LL~~l~----~~~G~I~i--------dg~di~~-~~~~~lr~~I~~V~Q~~------~LF 426 (597)
.+.+++|+|++||||||++++|.+.+ ++.|.+.. +|.++.+ ....++++++++++|++ .++
T Consensus 4 ~~~~i~i~G~~GsGKSTl~~~L~~~~g~~~~d~g~i~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 83 (227)
T 1cke_A 4 IAPVITIDGPSGAGKGTLCKAMAEALQWHLLDSGAIYRVLALAALHHHVDVASEDALVPLASHLDVRFVSTNGNLEVILE 83 (227)
T ss_dssp CSCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHHHHHHHTCCTTCHHHHHHHHHTCCEEEEEETTEEEEEET
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCCcccCcceeehhhHHHHHcCCCccCHHHHHHHHHhCceeeeccCCCceEEEC
Confidence 35789999999999999999999854 46799887 7887763 45677899999999986 455
Q ss_pred CccHHhhcccCCCCChHHHHHHHHHhcHHHHHHhc-CCCchhh-hCCCCCCChhHHHHHHHHHHHccCCCEEEeecCCC
Q psy1502 427 SGTLRKNLDPFEKYPDYVLWTALQEVELKDMIMEG-AGLNMTV-YEGGTNFSVGQRQLICLARAIVRNNVILVLDEATA 503 (597)
Q Consensus 427 ~gTI~eNI~~~~~~~~e~i~~a~~~a~l~~fI~~l-~GldT~v-ge~G~~LSGGQrQRIaIARAll~~p~ILILDEaTS 503 (597)
..++.+++ .++++.+++..+.+++++... .+.++.+ .++|.-++|+ .++++++++++++|+.+++.
T Consensus 84 ~~~v~~~~------~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~vldg~-----~~~~~~~~~~d~~i~l~~~~ 151 (227)
T 1cke_A 84 GEDVSGEI------RTQEVANAASQVAAFPRVREALLRRQRAFRELPGLIADGR-----DMGTVVFPDAPVKIFLDASS 151 (227)
T ss_dssp TEECHHHH------TSHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCEEEEES-----SCCCCCCTTCSEEEEEECCH
T ss_pred CeeCchhh------CCHHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCCEEEECC-----CccceEecCCCEEEEEeCCH
Confidence 55666665 467888999999999998875 6666655 3568888987 57778899999999988753
No 146
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=99.22 E-value=1.1e-13 Score=142.37 Aligned_cols=138 Identities=14% Similarity=0.136 Sum_probs=93.0
Q ss_pred cccEEEEeeEEEeCCCCccceeeeEEE-------------------cCCcEEEEEcCCCCCHHHHHHHHhccc---cCCc
Q psy1502 338 LGKIEFQNTNVRYLSGPRVIKNLNITI-------------------HPKEKIGIVGRTGAGKSSLIAAIFRLA---EVEG 395 (597)
Q Consensus 338 ~~~I~f~nVsf~Y~~~~~vL~~isl~I-------------------~~G~~vaIVG~SGsGKSTL~~LL~~l~---~~~G 395 (597)
.+.|+++||++.|. ++++++++.+ ++|+++||+||||||||||+++|.|++ |++|
T Consensus 35 ~~~i~~~~v~~~y~---~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~g~iigI~G~~GsGKSTl~~~L~~~l~~~~~~G 111 (308)
T 1sq5_A 35 NEDLSLEEVAEIYL---PLSRLLNFYISSNLRRQAVLEQFLGTNGQRIPYIISIAGSVAVGKSTTARVLQALLSRWPEHR 111 (308)
T ss_dssp CTTCCHHHHHHTHH---HHHHHHHHHHHHHHHHHHHHHHHHTCC-CCCCEEEEEEECTTSSHHHHHHHHHHHHTTSTTCC
T ss_pred ccccchHhHHHHHH---HHHHHHHHHHhhhhhHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHHhhCCCCC
Confidence 34689999999993 6999999988 899999999999999999999999975 5689
Q ss_pred eEEE---cceeCCCCChHHHhcCcEEEeCCCCCCC-ccHHhhcccCCCCChHHHHHHHHHhcHHHHHHhc-CCCchhhhC
Q psy1502 396 VIKI---DDIDTEDVPLSKLRSNISIIPQDPVLFS-GTLRKNLDPFEKYPDYVLWTALQEVELKDMIMEG-AGLNMTVYE 470 (597)
Q Consensus 396 ~I~i---dg~di~~~~~~~lr~~I~~V~Q~~~LF~-gTI~eNI~~~~~~~~e~i~~a~~~a~l~~fI~~l-~GldT~vge 470 (597)
+|.+ ||.+.. ...++.+++| |+..++. -|+.+|+.+ +..+ .|-. .+--
T Consensus 112 ~i~vi~~d~~~~~----~~~~~~~~~v-q~~~~~~~~~~~~~~~~---------------------~~~l~~~~~-~i~~ 164 (308)
T 1sq5_A 112 RVELITTDGFLHP----NQVLKERGLM-KKKGFPESYDMHRLVKF---------------------VSDLKSGVP-NVTA 164 (308)
T ss_dssp CEEEEEGGGGBCC----HHHHHHHTCT-TCTTSGGGBCHHHHHHH---------------------HHHHTTTCS-CEEE
T ss_pred eEEEEecCCccCc----HHHHHhCCEe-ecCCCCCCccHHHHHHH---------------------HHHHhCCCC-ceec
Confidence 9999 998742 2456778888 7654432 355555432 1111 1111 0000
Q ss_pred CCCCCChhHHHHHHHHHHHccCCCEEEeecCCCCCCH
Q psy1502 471 GGTNFSVGQRQLICLARAIVRNNVILVLDEATANVDP 507 (597)
Q Consensus 471 ~G~~LSGGQrQRIaIARAll~~p~ILILDEaTSaLD~ 507 (597)
--.+.+.+ +|++.+.+.+.+|+++|+|.+....|.
T Consensus 165 P~~~~~~~--~~~~~~~~~~~~~~ivIlEG~~l~~~~ 199 (308)
T 1sq5_A 165 PVYSHLIY--DVIPDGDKTVVQPDILILEGLNVLQSG 199 (308)
T ss_dssp CCEETTTT--EECTTCCEEEC-CCEEEEECTTTTCCG
T ss_pred cccccccc--CcccccceecCCCCEEEECchhhCCCc
Confidence 00111222 334333355678999999999987774
No 147
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=99.16 E-value=4e-12 Score=130.39 Aligned_cols=113 Identities=13% Similarity=-0.022 Sum_probs=74.9
Q ss_pred EEcCCcEEEEEcCCCCCHHHHHHHHhccc-cCCceEEE---cceeCCCCChHHHhcCcEEEeCCCCCC------CccHHh
Q psy1502 363 TIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EVEGVIKI---DDIDTEDVPLSKLRSNISIIPQDPVLF------SGTLRK 432 (597)
Q Consensus 363 ~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I~i---dg~di~~~~~~~lr~~I~~V~Q~~~LF------~gTI~e 432 (597)
++.+|++++++||||||||||++.|. +. +.+|+|.+ +|.++.........+.+|||+|+|-+. +-|+ |
T Consensus 161 ~~l~G~i~~l~G~sG~GKSTLln~l~-~~~~~~G~i~~~~~~G~~~t~~~~~~~~~~~g~v~d~pg~~~~~l~~~lt~-e 238 (302)
T 2yv5_A 161 DYLEGFICILAGPSGVGKSSILSRLT-GEELRTQEVSEKTERGRHTTTGVRLIPFGKGSFVGDTPGFSKVEATMFVKP-R 238 (302)
T ss_dssp HHTTTCEEEEECSTTSSHHHHHHHHH-SCCCCCSCC---------CCCCEEEEEETTTEEEESSCCCSSCCGGGTSCG-G
T ss_pred hhccCcEEEEECCCCCCHHHHHHHHH-HhhCcccccccccCCCCCceeeEEEEEcCCCcEEEECcCcCcCcccccCCH-H
Confidence 45679999999999999999999999 87 57899999 999887644221124799999999653 4578 8
Q ss_pred hc--ccC---------CC-----CChHHHHHHHHHhcHHH-HHHhcCCCchhhhCCCCCCChhHHHHHHHHH
Q psy1502 433 NL--DPF---------EK-----YPDYVLWTALQEVELKD-MIMEGAGLNMTVYEGGTNFSVGQRQLICLAR 487 (597)
Q Consensus 433 NI--~~~---------~~-----~~~e~i~~a~~~a~l~~-fI~~l~GldT~vge~G~~LSGGQrQRIaIAR 487 (597)
|+ .+. .+ .....+.++++..++.+ .. +.. ...|||.+++++.|||
T Consensus 239 ~l~~~f~~~~~~~c~~~~~~~~~e~~~~v~~~l~~~~L~~~~~------~~~----~~~ls~~~~R~~~~~~ 300 (302)
T 2yv5_A 239 EVRNYFREFLRYQCKYPDCTHTNEPGCAVKEAVKNGEISCERY------KSY----LKIIKVYLEEIKELCR 300 (302)
T ss_dssp GGGGGCGGGHHHHHHSTTCCSSSCTTCHHHHHHHTTSSCHHHH------HHH----HHHTTCCCTTHHHHSS
T ss_pred HHHHHHHHHHHccCCCCCCCCCCCCCCHHHHHHHcCCCCHHHH------HHH----HHHHHHHHHHHHHHhc
Confidence 88 332 11 12345677777666643 22 222 2368998888999987
No 148
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=99.14 E-value=4.2e-11 Score=122.31 Aligned_cols=142 Identities=13% Similarity=0.038 Sum_probs=100.4
Q ss_pred EEEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhcccc-CCceEEEcceeCCCCChHHHhcCcEEE
Q psy1502 341 IEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAE-VEGVIKIDDIDTEDVPLSKLRSNISII 419 (597)
Q Consensus 341 I~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~~-~~G~I~idg~di~~~~~~~lr~~I~~V 419 (597)
+.++++++.|+... ++++|+ +|+.++++|++|+||||++..|++++. ..|+|.+.|.|.+.-... .
T Consensus 77 ~~~~~l~~~~~~~~---~~i~~~--~~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~~d~~~~~~~---~----- 143 (295)
T 1ls1_A 77 TVYEALKEALGGEA---RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAR---E----- 143 (295)
T ss_dssp HHHHHHHHHTTSSC---CCCCCC--SSEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEECCSSCHHHH---H-----
T ss_pred HHHHHHHHHHCCCC---ceeecC--CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcccHhHH---H-----
Confidence 56778888885322 688888 999999999999999999999999875 679999988876531110 0
Q ss_pred eCCCCCCCccHHhhcccCCCCChHHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHHHHHHccCCCEEEee
Q psy1502 420 PQDPVLFSGTLRKNLDPFEKYPDYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLD 499 (597)
Q Consensus 420 ~Q~~~LF~gTI~eNI~~~~~~~~e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaIARAll~~p~ILILD 499 (597)
++...++. .|++-... |..-...+-||.+|+++...+++++|+|
T Consensus 144 ------------------------ql~~~~~~----------~~l~~~~~--~~~~~p~~l~~~~l~~~~~~~~D~viiD 187 (295)
T 1ls1_A 144 ------------------------QLRLLGEK----------VGVPVLEV--MDGESPESIRRRVEEKARLEARDLILVD 187 (295)
T ss_dssp ------------------------HHHHHHHH----------HTCCEEEC--CTTCCHHHHHHHHHHHHHHHTCCEEEEE
T ss_pred ------------------------HHHHhccc----------CCeEEEEc--CCCCCHHHHHHHHHHHHHhCCCCEEEEe
Confidence 00000110 12322111 1122344568999999988999999999
Q ss_pred cC-CCCCCHHHHHHHHHHHHHhcCCcEEEEecc
Q psy1502 500 EA-TANVDPKTDLLIQRTIRKKFADCTVLTIAH 531 (597)
Q Consensus 500 Ea-TSaLD~~te~~I~~~l~~~~~~~TvI~IaH 531 (597)
|| ++++|...-..+.+..+...++.+++++..
T Consensus 188 tpp~~~~d~~~~~~l~~~~~~~~~~~~~lv~~~ 220 (295)
T 1ls1_A 188 TAGRLQIDEPLMGELARLKEVLGPDEVLLVLDA 220 (295)
T ss_dssp CCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEG
T ss_pred CCCCccccHHHHHHHHHHhhhcCCCEEEEEEeC
Confidence 99 999999888888777777767777665543
No 149
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=99.13 E-value=5.1e-13 Score=131.46 Aligned_cols=163 Identities=9% Similarity=0.077 Sum_probs=65.7
Q ss_pred ccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHh-ccccCCceEEEcceeCCCCChHH-HhcCcEEEeCCCCCCCc-cHH
Q psy1502 355 RVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIF-RLAEVEGVIKIDDIDTEDVPLSK-LRSNISIIPQDPVLFSG-TLR 431 (597)
Q Consensus 355 ~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~-~l~~~~G~I~idg~di~~~~~~~-lr~~I~~V~Q~~~LF~g-TI~ 431 (597)
...+++||++++|+.++|+||||||||||+++|+ +++++ ..++.++..-.+.. .+..+.|++|++..|.. +..
T Consensus 15 ~~~~~~sl~v~~G~ii~l~Gp~GsGKSTl~~~L~~~~~~~----~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~ 90 (231)
T 3lnc_A 15 QTQGPGSMLKSVGVILVLSSPSGCGKTTVANKLLEKQKNN----IVKSVSVTTRAARKGEKEGKDYYFVDREEFLRLCSN 90 (231)
T ss_dssp -------CCEECCCEEEEECSCC----CHHHHHHC----C----EEECCCEESSCCCTTCCBTTTBEECCHHHHHHHHHT
T ss_pred cccCCCCcccCCCCEEEEECCCCCCHHHHHHHHHhcCCCC----cccccccCCCCCCccccCCCeEEEecHHHhhhhhhc
Confidence 4678999999999999999999999999999999 98742 12232222111100 11234456665554432 223
Q ss_pred hhcc----cCC---CCChHHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCCh--hHHHHH-HHHH-HHccCCCEEEeec
Q psy1502 432 KNLD----PFE---KYPDYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSV--GQRQLI-CLAR-AIVRNNVILVLDE 500 (597)
Q Consensus 432 eNI~----~~~---~~~~e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSG--GQrQRI-aIAR-All~~p~ILILDE 500 (597)
+|+. +.. ..+.+++.++++. |....+. ..+.| .-+++. .-++ .++..|+..++||
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~i~~~~~~-----------~~~vild---~~~~g~~~~~~~~~~~~~~v~v~~~~~~~l~~ 156 (231)
T 3lnc_A 91 GEIIEHAEVFGNFYGVPRKNLEDNVDK-----------GVSTLLV---IDWQGAFKFMEMMREHVVSIFIMPPSMEELRR 156 (231)
T ss_dssp TCEEEEEEETTEEEEEECTTHHHHHHH-----------TCEEEEE---CCHHHHHHHHHHSGGGEEEEEEECSCHHHHHH
T ss_pred CceehhhhhccccCCCCHHHHHHHHHc-----------CCeEEEE---cCHHHHHHHHHhcCCCeEEEEEECCcHHHHHH
Confidence 3332 100 1112233333322 1111110 00001 113444 2222 3467888888999
Q ss_pred CCCCCCHHHHHHHHHHHHHhcCCcEEEEeccCchhHhhcCEEEE
Q psy1502 501 ATANVDPKTDLLIQRTIRKKFADCTVLTIAHRLHTIMDSDKVLV 544 (597)
Q Consensus 501 aTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrlsti~~~D~Iiv 544 (597)
.+++.|..++..+++.|.+..+. +.....+|.|++
T Consensus 157 Rl~~R~~~~~~~i~~rl~~~~~~---------~~~~~~~d~vI~ 191 (231)
T 3lnc_A 157 RLCGRRADDSEVVEARLKGAAFE---------ISHCEAYDYVIV 191 (231)
T ss_dssp C--------------CHHHHHHH---------HTTGGGSSEEEE
T ss_pred HHHHcCCCCHHHHHHHHHHHHHH---------HhhhcCCeEEEE
Confidence 99999999998888777655432 122356777666
No 150
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=99.09 E-value=4.1e-11 Score=122.82 Aligned_cols=96 Identities=17% Similarity=0.022 Sum_probs=64.3
Q ss_pred EEEcCCcEEEEEcCCCCCHHHHHHHHhccc-cCCceEEE---cceeCCCCChHHHhcCcEEEeCCCC-------------
Q psy1502 362 ITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EVEGVIKI---DDIDTEDVPLSKLRSNISIIPQDPV------------- 424 (597)
Q Consensus 362 l~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I~i---dg~di~~~~~~~lr~~I~~V~Q~~~------------- 424 (597)
|++.+|+.++|+||||||||||+++|.|+. |.+|+|.+ +|.++.........+.+++|+|+|-
T Consensus 164 f~~l~geiv~l~G~sG~GKSTll~~l~g~~~~~~G~i~~~~~~g~~~t~~~~~~~~~~~g~v~q~p~~~~~~~~~~~~~~ 243 (301)
T 1u0l_A 164 KEYLKGKISTMAGLSGVGKSSLLNAINPGLKLRVSEVSEKLQRGRHTTTTAQLLKFDFGGYVVDTPGFANLEINDIEPEE 243 (301)
T ss_dssp HHHHSSSEEEEECSTTSSHHHHHHHHSTTCCCC-------------CCCSCCEEECTTSCEEESSCSSTTCCCCSSCHHH
T ss_pred HHHhcCCeEEEECCCCCcHHHHHHHhcccccccccceecccCCCCCceeeeEEEEcCCCCEEEECcCCCccCCCcCCHHH
Confidence 456789999999999999999999999987 57899999 9999876542211247999999985
Q ss_pred ---CCC-ccHHhhcccCC----CCChHHHHHHHHHhcH-HHHH
Q psy1502 425 ---LFS-GTLRKNLDPFE----KYPDYVLWTALQEVEL-KDMI 458 (597)
Q Consensus 425 ---LF~-gTI~eNI~~~~----~~~~e~i~~a~~~a~l-~~fI 458 (597)
+|. -|+ +|+.+.. ......+.++++..++ .+..
T Consensus 244 ~~~l~~~~~~-~n~~~~~~~~~~e~~~~v~~~l~~~~L~~~~~ 285 (301)
T 1u0l_A 244 LKHYFKEFGD-KQCFFSDCNHVDEPECGVKEAVENGEIAESRY 285 (301)
T ss_dssp HGGGSTTSSS-CCCSSTTCCSSSCSSCHHHHHHHHTSSCHHHH
T ss_pred HHHHHHhccc-ccCcCCCCcCCCCCCcHHHHHHHcCCCCHHHH
Confidence 454 478 9998732 2234568899998888 3443
No 151
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=99.06 E-value=2.2e-11 Score=121.60 Aligned_cols=100 Identities=16% Similarity=0.160 Sum_probs=78.1
Q ss_pred cCCcEEEEEcCCCCCHHHHHHHHh---ccc-cCCceEE--------EcceeCC-CCChHHHhcCcEEEeC------CCCC
Q psy1502 365 HPKEKIGIVGRTGAGKSSLIAAIF---RLA-EVEGVIK--------IDDIDTE-DVPLSKLRSNISIIPQ------DPVL 425 (597)
Q Consensus 365 ~~G~~vaIVG~SGsGKSTL~~LL~---~l~-~~~G~I~--------idg~di~-~~~~~~lr~~I~~V~Q------~~~L 425 (597)
++|+.|+|+|||||||||++++|+ |++ +++|.|. .+|.++. ......+++++++++| ..++
T Consensus 25 ~~g~~I~I~G~~GsGKSTl~k~La~~Lg~~~~d~g~i~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 104 (252)
T 4e22_A 25 AIAPVITVDGPSGAGKGTLCKALAESLNWRLLDSGAIYRVLALAALHHQVDISTEEALVPLAAHLDVRFVSQNGQLQVIL 104 (252)
T ss_dssp TTSCEEEEECCTTSSHHHHHHHHHHHTTCEEEEHHHHHHHHHHHHHHTTCCSSSSTTHHHHHHTCCEEEEEETTEEEEEE
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHhcCCCcCCCCceehHhHHHHHHcCCCcccHHHHHHHHHcCCEEEecCCCCceEEE
Confidence 789999999999999999999999 876 5789999 9999984 5568889999999995 4567
Q ss_pred CCccHHhhcccCCCCChHHHHHHHHHhcHHHHHHhc-CCCchhhhC
Q psy1502 426 FSGTLRKNLDPFEKYPDYVLWTALQEVELKDMIMEG-AGLNMTVYE 470 (597)
Q Consensus 426 F~gTI~eNI~~~~~~~~e~i~~a~~~a~l~~fI~~l-~GldT~vge 470 (597)
++.++.+||. .+++..++..+..++.+... ..+...+++
T Consensus 105 ~~~~v~~~i~------~~~v~~~~s~~~~~~~vr~~l~~~~~~~a~ 144 (252)
T 4e22_A 105 EGEDVSNEIR------TETVGNTASQAAAFPRVREALLRRQRAFRE 144 (252)
T ss_dssp TTEECTTGGG------SHHHHHHHHHHTTSHHHHHHHHHHHHTTCC
T ss_pred CCeehhHHHH------HHHHHHHHHHhcccHHHHHHHHHHHHHHhh
Confidence 7788888875 35666666666666666554 444444443
No 152
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=99.06 E-value=1.9e-10 Score=117.75 Aligned_cols=97 Identities=20% Similarity=0.233 Sum_probs=70.5
Q ss_pred eeEEEcCCcEEEEEcCCCCCHHHHHHHHhcccc-CCceEEEcceeCCCCChHHHhcCcEEEeCCCCCCCccHHhhcccCC
Q psy1502 360 LNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAE-VEGVIKIDDIDTEDVPLSKLRSNISIIPQDPVLFSGTLRKNLDPFE 438 (597)
Q Consensus 360 isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~~-~~G~I~idg~di~~~~~~~lr~~I~~V~Q~~~LF~gTI~eNI~~~~ 438 (597)
+++..++|+.++|+|++||||||++..|++++. ..|+|.+.+.|.... + ..
T Consensus 97 ~~~~~~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~D~~r~---------~------------a~------- 148 (306)
T 1vma_A 97 LNVPPEPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTFRA---------A------------AI------- 148 (306)
T ss_dssp CCCCSSSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECTTCH---------H------------HH-------
T ss_pred CcccCCCCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEccccccH---------H------------HH-------
Confidence 345567899999999999999999999999874 678999888775310 0 00
Q ss_pred CCChHHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHH---HHHHHHccCCCEEEeecCCC
Q psy1502 439 KYPDYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLI---CLARAIVRNNVILVLDEATA 503 (597)
Q Consensus 439 ~~~~e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRI---aIARAll~~p~ILILDEaTS 503 (597)
+++.. +.+. .|++.. ...|||+.|++ +++||+.++|+++|+|||..
T Consensus 149 ----eqL~~---------~~~~-~gl~~~-----~~~s~~~~~~v~~~al~~a~~~~~dvvIiDtpg~ 197 (306)
T 1vma_A 149 ----EQLKI---------WGER-VGATVI-----SHSEGADPAAVAFDAVAHALARNKDVVIIDTAGR 197 (306)
T ss_dssp ----HHHHH---------HHHH-HTCEEE-----CCSTTCCHHHHHHHHHHHHHHTTCSEEEEEECCC
T ss_pred ----HHHHH---------HHHH-cCCcEE-----ecCCccCHHHHHHHHHHHHHhcCCCEEEEECCCc
Confidence 11211 2111 133321 24589999999 99999999999999999985
No 153
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=99.05 E-value=3.6e-10 Score=115.39 Aligned_cols=137 Identities=15% Similarity=0.094 Sum_probs=90.1
Q ss_pred cCCcEEEEEcCCCCCHHHHHHHHhcccc-CCceEEEcceeCCCCChHHHhcCcEEEeCCCCCCCccHHhhcccCCCCChH
Q psy1502 365 HPKEKIGIVGRTGAGKSSLIAAIFRLAE-VEGVIKIDDIDTEDVPLSKLRSNISIIPQDPVLFSGTLRKNLDPFEKYPDY 443 (597)
Q Consensus 365 ~~G~~vaIVG~SGsGKSTL~~LL~~l~~-~~G~I~idg~di~~~~~~~lr~~I~~V~Q~~~LF~gTI~eNI~~~~~~~~e 443 (597)
++|+.++++|++||||||++..|++.+. .+| +++.++.+|++ ..+..+++
T Consensus 103 ~~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G------------------~~V~lv~~D~~--r~~a~eqL--------- 153 (296)
T 2px0_A 103 IHSKYIVLFGSTGAGKTTTLAKLAAISMLEKH------------------KKIAFITTDTY--RIAAVEQL--------- 153 (296)
T ss_dssp CCSSEEEEEESTTSSHHHHHHHHHHHHHHTTC------------------CCEEEEECCCS--STTHHHHH---------
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHHhcC------------------CEEEEEecCcc--cchHHHHH---------
Confidence 4799999999999999999999999875 578 35667777763 22222222
Q ss_pred HHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHHHHHHccCCCEEEeecCCCCCCHHHHHHHHHHHHHhc--
Q psy1502 444 VLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATANVDPKTDLLIQRTIRKKF-- 521 (597)
Q Consensus 444 ~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaIARAll~~p~ILILDEaTSaLD~~te~~I~~~l~~~~-- 521 (597)
...++. .|++-... ..++..+.+|+++ ++|+++|+| |+++|+..+..+.+...-..
T Consensus 154 --~~~~~~----------~gl~~~~~------~~~~~l~~al~~~--~~~dlvIiD--T~G~~~~~~~~~~el~~~l~~~ 211 (296)
T 2px0_A 154 --KTYAEL----------LQAPLEVC------YTKEEFQQAKELF--SEYDHVFVD--TAGRNFKDPQYIDELKETIPFE 211 (296)
T ss_dssp --HHHHTT----------TTCCCCBC------SSHHHHHHHHHHG--GGSSEEEEE--CCCCCTTSHHHHHHHHHHSCCC
T ss_pred --HHHHHh----------cCCCeEec------CCHHHHHHHHHHh--cCCCEEEEe--CCCCChhhHHHHHHHHHHHhhc
Confidence 111111 22221111 1234567788864 999999999 99999877665544332221
Q ss_pred -CCcEEEEe--ccCchhHhh-cCEEEEEeCCeEEE
Q psy1502 522 -ADCTVLTI--AHRLHTIMD-SDKVLVMDSGVAVV 552 (597)
Q Consensus 522 -~~~TvI~I--aHrlsti~~-~D~Iivl~~G~Ive 552 (597)
.+.+++++ +|....+.. ||++..++.|.|+-
T Consensus 212 ~~~~~~lVl~at~~~~~~~~~~~~~~~l~~~giVl 246 (296)
T 2px0_A 212 SSIQSFLVLSATAKYEDMKHIVKRFSSVPVNQYIF 246 (296)
T ss_dssp TTEEEEEEEETTBCHHHHHHHTTTTSSSCCCEEEE
T ss_pred CCCeEEEEEECCCCHHHHHHHHHHHhcCCCCEEEE
Confidence 33456666 898877765 78777777777775
No 154
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=99.00 E-value=1.7e-10 Score=124.73 Aligned_cols=79 Identities=14% Similarity=0.156 Sum_probs=61.7
Q ss_pred EEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc-cCCceEEEcceeCCCCChHH--------H
Q psy1502 342 EFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EVEGVIKIDDIDTEDVPLSK--------L 412 (597)
Q Consensus 342 ~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I~idg~di~~~~~~~--------l 412 (597)
.+.++++.+ .++|+|+||+|++ +++||+||||||||||+++|+|++ |++|+|.++|.++...+... +
T Consensus 8 ~l~~l~~~~---~~~l~~vsl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~r~~~~~~~~ 83 (483)
T 3euj_A 8 KFRSLTLIN---WNGFFARTFDFDE-LVTTLSGGNGAGKSTTMAGFVTALIPDLTLLNFRNTTEAGSTSSSRDKGLYGKL 83 (483)
T ss_dssp EEEEEEEEE---ETTEEEEEEECCS-SEEEEECCTTSSHHHHHHHHHHHHCCCTTTCCCCCTTSCSCCCCSSCCSCGGGS
T ss_pred ceeEEEEec---cccccceEEEEcc-ceEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEEcccCchhHHhHHHHHhc
Confidence 456665533 2479999999999 999999999999999999999987 57899999999997655331 2
Q ss_pred hcCcEEEeCCCC
Q psy1502 413 RSNISIIPQDPV 424 (597)
Q Consensus 413 r~~I~~V~Q~~~ 424 (597)
+..+.|+.+++.
T Consensus 84 ~~~~~~~~~~~~ 95 (483)
T 3euj_A 84 KAGVCYAVLETV 95 (483)
T ss_dssp CSSEEEEEEEEE
T ss_pred CCCceEEEEehh
Confidence 334567766643
No 155
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=98.95 E-value=1.6e-10 Score=109.61 Aligned_cols=125 Identities=17% Similarity=0.195 Sum_probs=58.9
Q ss_pred CcEEEEEcCCCCCHHHHHHHHhcccc--------------CCceEEEcceeCCCCChHHHhcCcEEEeCCCCCCCccHHh
Q psy1502 367 KEKIGIVGRTGAGKSSLIAAIFRLAE--------------VEGVIKIDDIDTEDVPLSKLRSNISIIPQDPVLFSGTLRK 432 (597)
Q Consensus 367 G~~vaIVG~SGsGKSTL~~LL~~l~~--------------~~G~I~idg~di~~~~~~~lr~~I~~V~Q~~~LF~gTI~e 432 (597)
|+.++|+||||||||||+++|+|+++ ..|++ +|.+....+.+.+...+ .|+.+++..++..
T Consensus 1 ~~ii~l~GpsGaGKsTl~~~L~~~~~~~~~~~~~~~tr~~~~ge~--~g~~~~~~~~~~~~~~~---~~~~~~e~~~~~~ 75 (186)
T 3a00_A 1 SRPIVISGPSGTGKSTLLKKLFAEYPDSFGFSVSSTTRTPRAGEV--NGKDYNFVSVDEFKSMI---KNNEFIEWAQFSG 75 (186)
T ss_dssp CCCEEEESSSSSSHHHHHHHHHHHCGGGEECCCEEECSCCCTTCC--BTTTBEECCHHHHHHHH---HTTCEEEEEEETT
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCCccceEEeeccccCCCCCcc--CCeeeeecCHHHHHHHH---hhcceeeEEEEec
Confidence 67899999999999999999999865 24554 67666666665555543 2556666666666
Q ss_pred hcccCCCCChHHHHHHHHH----------hcHHHHHHh--------------c-CCCchhhhCCCCCCChhHHHHHHHHH
Q psy1502 433 NLDPFEKYPDYVLWTALQE----------VELKDMIME--------------G-AGLNMTVYEGGTNFSVGQRQLICLAR 487 (597)
Q Consensus 433 NI~~~~~~~~e~i~~a~~~----------a~l~~fI~~--------------l-~GldT~vge~G~~LSGGQrQRIaIAR 487 (597)
|+ ++. +.+++.++++. .++.. +.. . +-+...+-++|..-....+||++-|+
T Consensus 76 ~~-yg~--~~~~i~~~l~~g~~~il~~~~~g~~~-l~~~~~~~~~~i~i~~p~~~~l~~Rl~~Rg~~~~~~i~~rl~~~~ 151 (186)
T 3a00_A 76 NY-YGS--TVASVKQVSKSGKTCILDIDMQGVKS-VKAIPELNARFLFIAPPSVEDLKKRLEGRGTETEESINKRLSAAQ 151 (186)
T ss_dssp EE-EEE--EHHHHHHHHHTTCEEEEECCHHHHHH-HHTCGGGCCEEEEEECSCC--------------------------
T ss_pred ee-ccC--cHHHHHHHHHcCCeEEEEEcHHHHHH-HHHhcCCCeEEEEEECcCHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 65 321 23444444433 11111 222 1 35666677888887788899999999
Q ss_pred HHc-----cCCCEEEeec
Q psy1502 488 AIV-----RNNVILVLDE 500 (597)
Q Consensus 488 All-----~~p~ILILDE 500 (597)
.-+ +.++.+|..+
T Consensus 152 ~~~~~~~~~~~d~vi~nd 169 (186)
T 3a00_A 152 AELAYAETGAHDKVIVND 169 (186)
T ss_dssp -------CCCCSEEEECS
T ss_pred HHHHhhcccCCcEEEECc
Confidence 866 5677777664
No 156
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=98.93 E-value=1.4e-12 Score=132.06 Aligned_cols=136 Identities=15% Similarity=0.107 Sum_probs=97.3
Q ss_pred EEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccccCCceEEEcceeCCCCChHHHhcCcEEEeC
Q psy1502 342 EFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAEVEGVIKIDDIDTEDVPLSKLRSNISIIPQ 421 (597)
Q Consensus 342 ~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~~~~G~I~idg~di~~~~~~~lr~~I~~V~Q 421 (597)
+++++...|. .+.+++++++++++| ++|+||+|||||||++.|++... .|.|.++|.++.+......++.+++++|
T Consensus 51 ~l~~l~~~~~-~~~~l~~~~~~~~~g--vll~Gp~GtGKTtl~~~i~~~~~-~~~i~~~~~~~~~~~~~~~~~~i~~~~~ 126 (278)
T 1iy2_A 51 ELKEIVEFLK-NPSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR-VPFITASGSDFVEMFVGVGAARVRDLFE 126 (278)
T ss_dssp HHHHHHHHHH-CHHHHHHTTCCCCCE--EEEECCTTSSHHHHHHHHHHHTT-CCEEEEEHHHHHHSTTTHHHHHHHHHHH
T ss_pred HHHHHHHHHH-CHHHHHHcCCCCCCe--EEEECCCcChHHHHHHHHHHHcC-CCEEEecHHHHHHHHhhHHHHHHHHHHH
Confidence 4566666664 346899999999999 99999999999999999999764 7999999988765555555677888898
Q ss_pred CCC-CCC-ccHHhhcc-cCCCC------ChHHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHHHHHHccC
Q psy1502 422 DPV-LFS-GTLRKNLD-PFEKY------PDYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRN 492 (597)
Q Consensus 422 ~~~-LF~-gTI~eNI~-~~~~~------~~e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaIARAll~~ 492 (597)
++. .+. -++.||+. ++... ..++..+.+ ..++ ..|||||+||..+|+|+..+
T Consensus 127 ~~~~~~~~i~~iDeid~l~~~~~~~~~~~~~~~~~~~-----~~ll--------------~~lsgg~~~~~~i~~a~t~~ 187 (278)
T 1iy2_A 127 TAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTL-----NQLL--------------VEMDGFEKDTAIVVMAATNR 187 (278)
T ss_dssp HHHTSCSEEEEEETHHHHHCC--------CHHHHHHH-----HHHH--------------HHHTTCCTTCCEEEEEEESC
T ss_pred HHHhcCCcEEehhhhHhhhcccccccCCcchHHHHHH-----HHHH--------------HHHhCCCCCCCEEEEEecCC
Confidence 864 343 46678873 22110 112221111 1111 13789999999999999999
Q ss_pred CCEEEeecCC
Q psy1502 493 NVILVLDEAT 502 (597)
Q Consensus 493 p~ILILDEaT 502 (597)
|++ ||++.
T Consensus 188 p~~--ld~~l 195 (278)
T 1iy2_A 188 PDI--LDPAL 195 (278)
T ss_dssp TTS--SCHHH
T ss_pred chh--CCHhH
Confidence 987 68764
No 157
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=98.92 E-value=8.5e-10 Score=108.63 Aligned_cols=168 Identities=12% Similarity=0.135 Sum_probs=91.3
Q ss_pred CCccceee-eEEEcCCcEEEEEcCCCCCHHHHHHHHh-ccccCC-ceEEEcceeCCCCChHHH---hcCcEEEeCCCCCC
Q psy1502 353 GPRVIKNL-NITIHPKEKIGIVGRTGAGKSSLIAAIF-RLAEVE-GVIKIDDIDTEDVPLSKL---RSNISIIPQDPVLF 426 (597)
Q Consensus 353 ~~~vL~~i-sl~I~~G~~vaIVG~SGsGKSTL~~LL~-~l~~~~-G~I~idg~di~~~~~~~l---r~~I~~V~Q~~~LF 426 (597)
+-+.|+++ .--+++|+.++|+||+|||||||+.-++ ...+.. +.+.+++.. +.+.+ ..++++.+|+...
T Consensus 8 G~~~LD~~l~gGl~~G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~~e~----~~~~~~~~~~~~g~~~~~~~~- 82 (247)
T 2dr3_A 8 GIPGVDEILHGGIPERNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVALEE----HPVQVRQNMAQFGWDVKPYEE- 82 (247)
T ss_dssp CCTTHHHHTTTSEETTCEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEESSS----CHHHHHHHHHTTTCCCHHHHH-
T ss_pred CchhHHHHcCCCCCCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccC----CHHHHHHHHHHcCCCHHHHhh-
Confidence 33456665 5679999999999999999999966554 454444 455555432 22332 2345665554310
Q ss_pred CccHHhhcccCCCCChHHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHHHHHHc--cCCCEEEeecCCCC
Q psy1502 427 SGTLRKNLDPFEKYPDYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIV--RNNVILVLDEATAN 504 (597)
Q Consensus 427 ~gTI~eNI~~~~~~~~e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaIARAll--~~p~ILILDEaTSa 504 (597)
.+|+...+... +.+ + .....+..+-+. +....+....++.++ .+|+++++|++|+-
T Consensus 83 ----~~~l~~~~~~~-~~~-------~------~~~~~~~~~~~~----~~~~~~~~~~i~~~~~~~~~~~vviD~~~~l 140 (247)
T 2dr3_A 83 ----KGMFAMVDAFT-AGI-------G------KSKEYEKYIVHD----LTDIREFIEVLRQAIRDINAKRVVVDSVTTL 140 (247)
T ss_dssp ----HTSEEEEECST-TTT-------C------C--CCCSCBCSC----CSSHHHHHHHHHHHHHHHTCCEEEEETSGGG
T ss_pred ----CCcEEEEecch-hhc-------c------cccccccccccC----ccCHHHHHHHHHHHHHHhCCCEEEECCchHh
Confidence 11222110000 000 0 000000001111 122334444444444 47999999999988
Q ss_pred C--CHHHHHHHHHHHHHhc--CCcEEEEeccCchh---------HhhcCEEEEEeC
Q psy1502 505 V--DPKTDLLIQRTIRKKF--ADCTVLTIAHRLHT---------IMDSDKVLVMDS 547 (597)
Q Consensus 505 L--D~~te~~I~~~l~~~~--~~~TvI~IaHrlst---------i~~~D~Iivl~~ 547 (597)
+ |+.........+.+.. .++|+|+++|.... ...||.|+.|+.
T Consensus 141 ~~~~~~~~~~~l~~l~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~~~D~vi~L~~ 196 (247)
T 2dr3_A 141 YINKPAMARSIILQLKRVLAGTGCTSIFVSQVSVGERGFGGPGVEHGVDGIIRLDL 196 (247)
T ss_dssp TTTCGGGHHHHHHHHHHHHHHTTCEEEEEEECC----CCC-CCHHHHSSEEEEEEE
T ss_pred hcCCHHHHHHHHHHHHHHHHHCCCeEEEEecCCCCcccccccccceeEEEEEEEEE
Confidence 7 5533344444444432 47899999998765 356899999964
No 158
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=98.90 E-value=2e-10 Score=109.21 Aligned_cols=140 Identities=16% Similarity=0.163 Sum_probs=76.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhccc-c-----------CCceEEEcceeCCC--CChHHHhcCcEEEeCCCCCCCc--cHHh
Q psy1502 369 KIGIVGRTGAGKSSLIAAIFRLA-E-----------VEGVIKIDDIDTED--VPLSKLRSNISIIPQDPVLFSG--TLRK 432 (597)
Q Consensus 369 ~vaIVG~SGsGKSTL~~LL~~l~-~-----------~~G~I~idg~di~~--~~~~~lr~~I~~V~Q~~~LF~g--TI~e 432 (597)
+++|+|++|||||||++.+.+.. + .+|+|.++|.++.- ++....++..++++|...-.++ ++.|
T Consensus 31 kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~d 110 (191)
T 1oix_A 31 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRAITSAYYRGAVGALLVYD 110 (191)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEETTEEEEEEEEEECSCCSSSCCCHHHHTTCCEEEEEEE
T ss_pred EEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEECCCCcchhhhhHHHhhcCCEEEEEEE
Confidence 78999999999999999999863 2 36899999976531 1211122333444432111110 1111
Q ss_pred hcccCCCCChHHHHHHHHHhcHHHHHHhc--CCCc-hhhhCCCCCCChhHHHHHHHHHHHccCCCEEEeecCCCCCCHHH
Q psy1502 433 NLDPFEKYPDYVLWTALQEVELKDMIMEG--AGLN-MTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATANVDPKT 509 (597)
Q Consensus 433 NI~~~~~~~~e~i~~a~~~a~l~~fI~~l--~Gld-T~vge~G~~LSGGQrQRIaIARAll~~p~ILILDEaTSaLD~~t 509 (597)
+ ++..-.+.++. ..+.+... .+.- -.++.+ ..|..-..+...+||++.++|+++++| |||+|.++
T Consensus 111 ~-------~~~~s~~~~~~--~~~~~~~~~~~~~~i~~v~nK-~Dl~~~~~~~~~~a~~l~~~~~~~~ld--~Sald~~~ 178 (191)
T 1oix_A 111 I-------AKHLTYENVER--WLKELRDHADSNIVIMLVGNK-SDLRHLRAVPTDEARAFAEKNGLSFIE--TSALDSTN 178 (191)
T ss_dssp T-------TCHHHHHTHHH--HHHHHHHHSCTTCEEEEEEEC-GGGGGGCCSCHHHHHHHHHHTTCEEEE--CCTTTCTT
T ss_pred C-------cCHHHHHHHHH--HHHHHHHhcCCCCcEEEEEEC-cccccccccCHHHHHHHHHHcCCEEEE--EeCCCCCC
Confidence 1 11111111100 00011110 0100 011221 122222224578999999999999999 99999999
Q ss_pred HHHHHHHHHHh
Q psy1502 510 DLLIQRTIRKK 520 (597)
Q Consensus 510 e~~I~~~l~~~ 520 (597)
-..+.+.|.+.
T Consensus 179 v~~l~~~l~~~ 189 (191)
T 1oix_A 179 VEAAFQTILTE 189 (191)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 98888887653
No 159
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=98.85 E-value=4e-12 Score=126.78 Aligned_cols=138 Identities=15% Similarity=0.091 Sum_probs=98.3
Q ss_pred EEEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccccCCceEEEcceeCCCCChHHHhcCcEEEe
Q psy1502 341 IEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAEVEGVIKIDDIDTEDVPLSKLRSNISIIP 420 (597)
Q Consensus 341 I~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~~~~G~I~idg~di~~~~~~~lr~~I~~V~ 420 (597)
.+++++...|. .+.+++++++++++| ++|+||+|||||||++.|++... .|.+.++|.++.+......++.+++++
T Consensus 26 ~~l~~l~~~~~-~~~~~~~~~~~~~~g--~ll~G~~G~GKTtl~~~i~~~~~-~~~i~~~~~~~~~~~~~~~~~~i~~~~ 101 (254)
T 1ixz_A 26 EELKEIVEFLK-NPSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR-VPFITASGSDFVEMFVGVGAARVRDLF 101 (254)
T ss_dssp HHHHHHHHHHH-CHHHHHHTTCCCCSE--EEEECCTTSSHHHHHHHHHHHTT-CCEEEEEHHHHHHSCTTHHHHHHHHHH
T ss_pred HHHHHHHHHHH-CHHHHHHcCCCCCCe--EEEECCCCCCHHHHHHHHHHHhC-CCEEEeeHHHHHHHHhhHHHHHHHHHH
Confidence 45677777774 346899999999999 99999999999999999999764 789999998876554445566788888
Q ss_pred CCCC-CCC-ccHHhhcc-cCCC------CChHHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHHHHHHcc
Q psy1502 421 QDPV-LFS-GTLRKNLD-PFEK------YPDYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVR 491 (597)
Q Consensus 421 Q~~~-LF~-gTI~eNI~-~~~~------~~~e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaIARAll~ 491 (597)
|+.. .+. -++.||+. ++.. ...++..+.+ ..++ ..|||||+||..+|+|+..
T Consensus 102 ~~~~~~~~~i~~~Deid~l~~~~~~~~~~~~~~~~~~~-----~~ll--------------~~l~g~~~~~~~i~~a~t~ 162 (254)
T 1ixz_A 102 ETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTL-----NQLL--------------VEMDGFEKDTAIVVMAATN 162 (254)
T ss_dssp HHHTTSSSEEEEEETHHHHHC---------CHHHHHHH-----HHHH--------------HHHHTCCTTCCEEEEEEES
T ss_pred HHHHhcCCeEEEehhhhhhhcccCccccccchHHHHHH-----HHHH--------------HHHhCCCCCCCEEEEEccC
Confidence 8764 333 46677773 2211 0112211111 1111 1367999999999999999
Q ss_pred CCCEEEeecCCC
Q psy1502 492 NNVILVLDEATA 503 (597)
Q Consensus 492 ~p~ILILDEaTS 503 (597)
+|++ ||++.-
T Consensus 163 ~p~~--ld~~l~ 172 (254)
T 1ixz_A 163 RPDI--LDPALL 172 (254)
T ss_dssp CGGG--SCGGGG
T ss_pred Cchh--CCHHHc
Confidence 9997 788764
No 160
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=98.85 E-value=1.5e-09 Score=122.78 Aligned_cols=131 Identities=18% Similarity=0.135 Sum_probs=93.6
Q ss_pred eEEEcCCcEEEEEcCCCCCHHHHHHHHhccc---cCCceEEEcceeCCCCChHHHhcCcEEEeCCCCCCCccHHhhcc--
Q psy1502 361 NITIHPKEKIGIVGRTGAGKSSLIAAIFRLA---EVEGVIKIDDIDTEDVPLSKLRSNISIIPQDPVLFSGTLRKNLD-- 435 (597)
Q Consensus 361 sl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~---~~~G~I~idg~di~~~~~~~lr~~I~~V~Q~~~LF~gTI~eNI~-- 435 (597)
|+++++|.+++|+|++|+|||||++.|++.. +..|+| .+|.++.++.....++.|++.+|.+.++.++++.||.
T Consensus 3 s~~~~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V-~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~~nliDT 81 (665)
T 2dy1_A 3 TEGGAMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRV-EEGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLLDA 81 (665)
T ss_dssp ---CCCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCG-GGTCCSSCCSHHHHHTTSCCSCEEEEEEETTEEEEEEEC
T ss_pred CCccCCCcEEEEECCCCChHHHHHHHHHHhcCCCCcccee-cCCcccccCCHHHHhcCCeEEecceEEeeCCEEEEEEeC
Confidence 4678899999999999999999999999764 357999 8999999999999999999999999999999999984
Q ss_pred cCCCCChHHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHHHHHHccCCCEEEeecCCCCCCHHHHHHHHH
Q psy1502 436 PFEKYPDYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATANVDPKTDLLIQR 515 (597)
Q Consensus 436 ~~~~~~~e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaIARAll~~p~ILILDEaTSaLD~~te~~I~~ 515 (597)
+|..--..++..+++. .++-++++| ||+++|+.++..+..
T Consensus 82 pG~~~f~~~~~~~l~~---------------------------------------ad~~ilVvD-~~~g~~~qt~~~~~~ 121 (665)
T 2dy1_A 82 PGYGDFVGEIRGALEA---------------------------------------ADAALVAVS-AEAGVQVGTERAWTV 121 (665)
T ss_dssp CCSGGGHHHHHHHHHH---------------------------------------CSEEEEEEE-TTTCSCHHHHHHHHH
T ss_pred CCccchHHHHHHHHhh---------------------------------------cCcEEEEEc-CCcccchhHHHHHHH
Confidence 4321001222222221 244566666 777777777755443
Q ss_pred HHHHhcCCcEEEEeccCchh
Q psy1502 516 TIRKKFADCTVLTIAHRLHT 535 (597)
Q Consensus 516 ~l~~~~~~~TvI~IaHrlst 535 (597)
+.. .+.++|++.|.+..
T Consensus 122 ~~~---~~ip~ilv~NKiD~ 138 (665)
T 2dy1_A 122 AER---LGLPRMVVVTKLDK 138 (665)
T ss_dssp HHH---TTCCEEEEEECGGG
T ss_pred HHH---ccCCEEEEecCCch
Confidence 322 25666777777664
No 161
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=98.84 E-value=5.6e-10 Score=121.48 Aligned_cols=159 Identities=13% Similarity=0.074 Sum_probs=94.8
Q ss_pred eeeEEEcCCcEEEEEcCCCCCHHHHHHHHhc--ccc-CCceEEEcceeCCCCChHHHhcCcEEEeCCCCCCCccHHhhcc
Q psy1502 359 NLNITIHPKEKIGIVGRTGAGKSSLIAAIFR--LAE-VEGVIKIDDIDTEDVPLSKLRSNISIIPQDPVLFSGTLRKNLD 435 (597)
Q Consensus 359 ~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~--l~~-~~G~I~idg~di~~~~~~~lr~~I~~V~Q~~~LF~gTI~eNI~ 435 (597)
-+++++.++..++|+|+|||||||+++.|.. ++. ..|++.+.+.|.+......+.. -|+++. ++.+|
T Consensus 159 pv~ldL~~~pHlLIaG~TGSGKSt~L~~li~sLl~~~~p~~v~l~liDpK~~el~~~~~-------lPhl~~-~Vvtd-- 228 (512)
T 2ius_A 159 PVVADLAKMPHLLVAGTTGSGASVGVNAMILSMLYKAQPEDVRFIMIDPKMLELSVYEG-------IPHLLT-EVVTD-- 228 (512)
T ss_dssp EEEEEGGGSCSEEEECCTTSSHHHHHHHHHHHHHTTCCTTTEEEEEECCSSSGGGGGTT-------CTTBSS-SCBCS--
T ss_pred EEEEEcccCceEEEECCCCCCHHHHHHHHHHHHHHhCCCceEEEEEECCchhhhhhhcc-------CCcccc-eeecC--
Confidence 4778889999999999999999999998875 443 5688988888877655444321 122221 11111
Q ss_pred cCCCCChHHHHHHHHHhc--HHHHHHhc--CCCchhhhCC---CCCCChhHHHHH----------HHHHHHccCCC-EEE
Q psy1502 436 PFEKYPDYVLWTALQEVE--LKDMIMEG--AGLNMTVYEG---GTNFSVGQRQLI----------CLARAIVRNNV-ILV 497 (597)
Q Consensus 436 ~~~~~~~e~i~~a~~~a~--l~~fI~~l--~GldT~vge~---G~~LSGGQrQRI----------aIARAll~~p~-ILI 497 (597)
.++..++++.+. +.+-.+.+ .|+...-+-+ ...+||||+||. ++|+++-..|. +++
T Consensus 229 ------~~~a~~~L~~~~~EmerR~~ll~~~Gv~~i~~yn~~~~~~~s~G~~~~~~~~~pg~~~~~~a~~l~~lP~ivlv 302 (512)
T 2ius_A 229 ------MKDAANALRWCVNEMERRYKLMSALGVRNLAGYNEKIAEADRMMRPIPDPYWKPGDSMDAQHPVLKKEPYIVVL 302 (512)
T ss_dssp ------HHHHHHHHHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTTCCCBCTTC---------CCBCCCCCEEEEE
T ss_pred ------HHHHHHHHHHHHHHHHHHHHHHHHcCCccHHHHHHHHHHHhhcCCcccccccccccchhccccccccCCcEEEE
Confidence 122222222111 11100111 2333222111 124788988763 46788888998 788
Q ss_pred eecCCCCCCHHHHHHHHHHHHH---hcC--CcEEEEeccCch
Q psy1502 498 LDEATANVDPKTDLLIQRTIRK---KFA--DCTVLTIAHRLH 534 (597)
Q Consensus 498 LDEaTSaLD~~te~~I~~~l~~---~~~--~~TvI~IaHrls 534 (597)
+||+++.+|.. ...+.+.|.+ ..+ +.++|++|||++
T Consensus 303 IDE~~~ll~~~-~~~~~~~l~~Lar~gRa~GI~LIlaTQrp~ 343 (512)
T 2ius_A 303 VDEFADLMMTV-GKKVEELIARLAQKARAAGIHLVLATQRPS 343 (512)
T ss_dssp EETHHHHHHHH-HHHHHHHHHHHHHHCGGGTEEEEEEESCCC
T ss_pred EeCHHHHHhhh-hHHHHHHHHHHHHHhhhCCcEEEEEecCCc
Confidence 99999999843 2334444433 222 679999999998
No 162
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=98.83 E-value=5.8e-12 Score=131.07 Aligned_cols=155 Identities=15% Similarity=0.122 Sum_probs=95.3
Q ss_pred EEEEeeEEEeCCCCccceeeeEEEcCC-------cEEEEEcCCCCCHHHHHHHHhccc-----cCCceEEEcceeCCCCC
Q psy1502 341 IEFQNTNVRYLSGPRVIKNLNITIHPK-------EKIGIVGRTGAGKSSLIAAIFRLA-----EVEGVIKIDDIDTEDVP 408 (597)
Q Consensus 341 I~f~nVsf~Y~~~~~vL~~isl~I~~G-------~~vaIVG~SGsGKSTL~~LL~~l~-----~~~G~I~idg~di~~~~ 408 (597)
++.++++..|+ ++.+++++++.+++| +.++|+||+|+|||||+++|++.. +.+|.+..++.++..+.
T Consensus 19 lr~~~l~~~~g-~~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~~~~~~l~~~~ 97 (334)
T 1in4_A 19 LRPKSLDEFIG-QENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQGDMAAIL 97 (334)
T ss_dssp TSCSSGGGCCS-CHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCCSHHHHHHHH
T ss_pred cCCccHHHccC-cHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechHhcCHHHHHHHH
Confidence 34455555564 346899999999877 889999999999999999999864 45788887776654321
Q ss_pred hHHHhcCcEEEeCCCCCCCccHHhhcccC-CCC--C----hHHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHH
Q psy1502 409 LSKLRSNISIIPQDPVLFSGTLRKNLDPF-EKY--P----DYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQ 481 (597)
Q Consensus 409 ~~~lr~~I~~V~Q~~~LF~gTI~eNI~~~-~~~--~----~e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQ 481 (597)
....+..|.+++|...++. ++.|++... ++. + ... ..+.+ ...... -++.. ...+-..||+|+||
T Consensus 98 ~~~~~~~v~~iDE~~~l~~-~~~e~L~~~~~~~~~~i~~~~~~---~~~~i--~~~l~~-~~li~-at~~~~~Ls~~l~s 169 (334)
T 1in4_A 98 TSLERGDVLFIDEIHRLNK-AVEELLYSAIEDFQIDIMIGKGP---SAKSI--RIDIQP-FTLVG-ATTRSGLLSSPLRS 169 (334)
T ss_dssp HHCCTTCEEEEETGGGCCH-HHHHHHHHHHHTSCCCC--------------------CC-CEEEE-EESCGGGSCHHHHT
T ss_pred HHccCCCEEEEcchhhcCH-HHHHHHHHHHHhcccceeeccCc---ccccc--cccCCC-eEEEE-ecCCcccCCHHHHH
Confidence 1112457999999887765 777777321 110 0 000 00100 011110 11110 11223489999999
Q ss_pred HHHHHHHHccCCCEEEeecCCCCCCHHHHHHHHHHHHHh
Q psy1502 482 LICLARAIVRNNVILVLDEATANVDPKTDLLIQRTIRKK 520 (597)
Q Consensus 482 RIaIARAll~~p~ILILDEaTSaLD~~te~~I~~~l~~~ 520 (597)
|++++ ..||+.+...+.+.|++.
T Consensus 170 R~~l~----------------~~Ld~~~~~~l~~iL~~~ 192 (334)
T 1in4_A 170 RFGII----------------LELDFYTVKELKEIIKRA 192 (334)
T ss_dssp TCSEE----------------EECCCCCHHHHHHHHHHH
T ss_pred hcCce----------------eeCCCCCHHHHHHHHHHH
Confidence 98765 567776666666666554
No 163
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=98.81 E-value=1.4e-10 Score=113.57 Aligned_cols=74 Identities=18% Similarity=0.221 Sum_probs=50.2
Q ss_pred cEEEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc-cCCceEEEcceeCCCCCh--------H
Q psy1502 340 KIEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EVEGVIKIDDIDTEDVPL--------S 410 (597)
Q Consensus 340 ~I~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I~idg~di~~~~~--------~ 410 (597)
.|+++|++..|.. +|++++ +.++|+||||||||||+++|+++. |++|.|.++|.++...++ .
T Consensus 9 ~l~l~~~~~~~~~--------~~~~~~-~~~~i~GpnGsGKSTll~~i~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 79 (227)
T 1qhl_A 9 SLTLINWNGFFAR--------TFDLDE-LVTTLSGGNGAGKSTTMAAFVTALIPDLTLLHFRNTTEAGATSGSRDKGLHG 79 (227)
T ss_dssp EEEEEEETTEEEE--------EECHHH-HHHHHHSCCSHHHHHHHHHHHHHHSCCTTTC------------------CGG
T ss_pred EEEEEeeecccCC--------EEEEcC-cEEEEECCCCCCHHHHHHHHhcccccCCCeEEECCEEcccCCccccccchhh
Confidence 4889998765531 456666 899999999999999999999975 688999999999844332 2
Q ss_pred HHhcCcEEEeCC
Q psy1502 411 KLRSNISIIPQD 422 (597)
Q Consensus 411 ~lr~~I~~V~Q~ 422 (597)
..+..++||+|+
T Consensus 80 ~~~~~i~~v~~~ 91 (227)
T 1qhl_A 80 KLKAGVCYSMLD 91 (227)
T ss_dssp GBCSSEEEEEEE
T ss_pred HhhcCcEEEEEe
Confidence 346789999985
No 164
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=98.80 E-value=1.9e-11 Score=129.17 Aligned_cols=162 Identities=15% Similarity=0.091 Sum_probs=102.4
Q ss_pred EEcCCcEEEEEcCCCCCHHHHHHHHhc------------cc-cCCceEEEcceeCCCCChHHH--hcC---cEEEeCCCC
Q psy1502 363 TIHPKEKIGIVGRTGAGKSSLIAAIFR------------LA-EVEGVIKIDDIDTEDVPLSKL--RSN---ISIIPQDPV 424 (597)
Q Consensus 363 ~I~~G~~vaIVG~SGsGKSTL~~LL~~------------l~-~~~G~I~idg~di~~~~~~~l--r~~---I~~V~Q~~~ 424 (597)
.+++|.++||||++|+|||||++.|+| .. |..|.+.++|..+..+. +.. ++. ..++.+.|-
T Consensus 16 ~v~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~-~~~~~~~~v~~~i~lvD~pG 94 (392)
T 1ni3_A 16 RPGNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLC-EAYKPKSRVPAFLTVFDIAG 94 (392)
T ss_dssp SSSSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHH-HHHCCSEEECEEEEEECTGG
T ss_pred cccCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhh-hhcccccccCcceEEEeccc
Confidence 457899999999999999999999998 22 45799999874321110 000 111 235556665
Q ss_pred CCCc-cHHhhcccCCCCChHHHHHHHHHhcHHHHHHhc-CCCchhhhCCCCCCChhHHHHHHHHHHHccCC--CEEEeec
Q psy1502 425 LFSG-TLRKNLDPFEKYPDYVLWTALQEVELKDMIMEG-AGLNMTVYEGGTNFSVGQRQLICLARAIVRNN--VILVLDE 500 (597)
Q Consensus 425 LF~g-TI~eNI~~~~~~~~e~i~~a~~~a~l~~fI~~l-~GldT~vge~G~~LSGGQrQRIaIARAll~~p--~ILILDE 500 (597)
+..+ |-.+++. .+....++.+.. +... +..+ ...-..+||+. +| +|+++||
T Consensus 95 l~~~~s~~e~L~-------~~fl~~ir~~d~---il~Vvd~~~---d~~i~~v~~~~------------dP~~di~ilde 149 (392)
T 1ni3_A 95 LTKGASTGVGLG-------NAFLSHVRAVDA---IYQVVRAFD---DAEIIHVEGDV------------DPIRDLSIIVD 149 (392)
T ss_dssp GCCCCCSSSSSC-------HHHHHHHTTCSE---EEEEEECCC---TTCSSCCSSSS------------CHHHHHHHHHH
T ss_pred cccCCcHHHHHH-------HHHHHHHHHHHH---HHHHHhccc---cceeeeecccc------------Ccchhhhhchh
Confidence 5542 3233321 112222221110 1111 1221 12233456653 99 9999999
Q ss_pred CCCCCCHHHHHHHHHHHHHh-cC-CcEEEEeccCchhHhh-cCEEE-EEeCC-eEEE
Q psy1502 501 ATANVDPKTDLLIQRTIRKK-FA-DCTVLTIAHRLHTIMD-SDKVL-VMDSG-VAVV 552 (597)
Q Consensus 501 aTSaLD~~te~~I~~~l~~~-~~-~~TvI~IaHrlsti~~-~D~Ii-vl~~G-~Ive 552 (597)
+++.+|++.-....+.+... .+ +.|+ ++|.+..+.. ||++. +|++| +++.
T Consensus 150 el~~~D~~~~~k~~~~l~~~~~~~g~ti--~sh~~~~~~~l~~~i~~~L~~G~~~~~ 204 (392)
T 1ni3_A 150 ELLIKDAEFVEKHLEGLRKITSRGANTL--EMKAKKEEQAIIEKVYQYLTETKQPIR 204 (392)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCSSCSS--SHHHHHHHHHHHHHHHHHHHTTCSCGG
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhcCCcc--ccccHHHHHHHHHHHHHHhccCCceee
Confidence 99999999988888888876 44 3453 4999988865 99999 99999 7763
No 165
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=98.79 E-value=2.8e-10 Score=127.77 Aligned_cols=156 Identities=13% Similarity=0.110 Sum_probs=103.0
Q ss_pred CCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhcccc-CC-ceEEEcceeCCCCChHHHhcCcEEEeCCC-------
Q psy1502 353 GPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAE-VE-GVIKIDDIDTEDVPLSKLRSNISIIPQDP------- 423 (597)
Q Consensus 353 ~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~~-~~-G~I~idg~di~~~~~~~lr~~I~~V~Q~~------- 423 (597)
...+++++++.+++|+.++|+||+|+|||||++.|.++.+ .. |.+.+++.+.... ...++++||..
T Consensus 46 ~~~~l~~l~~~i~~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~~~~~~~~~~~~~-----~p~i~~~p~g~~~~~~e~ 120 (604)
T 3k1j_A 46 QEHAVEVIKTAANQKRHVLLIGEPGTGKSMLGQAMAELLPTETLEDILVFPNPEDEN-----MPRIKTVPACQGRRIVEK 120 (604)
T ss_dssp CHHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHTSCCSSCEEEEEECCTTCTT-----SCEEEEEETTHHHHHHHH
T ss_pred chhhHhhccccccCCCEEEEEeCCCCCHHHHHHHHhccCCcccCCeEEEeCCccccc-----CCcEEEEecchHHHHHHH
Confidence 4568999999999999999999999999999999999864 44 8999988776654 35688888764
Q ss_pred ---------------CCC-CccHHhhcccCCC-CChHHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHHH
Q psy1502 424 ---------------VLF-SGTLRKNLDPFEK-YPDYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLA 486 (597)
Q Consensus 424 ---------------~LF-~gTI~eNI~~~~~-~~~e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaIA 486 (597)
+.| +.++.+|+...+. .....+... ......+++.. ++.. ......+|+|+.|++..+
T Consensus 121 ~~~~~~~~~~~r~~~~~~~~~~~~~nl~v~~~~~~~~~~v~~-~~~~~~~L~G~---~~~~-~~~~g~~~~g~~~~i~~g 195 (604)
T 3k1j_A 121 YREKAKSQESVKSSNMRLKSTVLVPKLLVDNCGRTKAPFIDA-TGAHAGALLGD---VRHD-PFQSGGLGTPAHERVEPG 195 (604)
T ss_dssp HHHHHHHHTCC-----------CCCEEEECCTTCSSCCEEEC-TTCCHHHHHCE---ECCC-CC----CCCCGGGGEECC
T ss_pred HHHhhccchhhhhhcccccccccccceeeccccCCCCCEEEc-CCCCHHhcCce---EEec-hhhcCCccccccccccCc
Confidence 223 2355556532110 000000000 00011111111 1110 112235999999999999
Q ss_pred HHHccCCCEEEeecCCCCCCHHHHHHHHHHHHH
Q psy1502 487 RAIVRNNVILVLDEATANVDPKTDLLIQRTIRK 519 (597)
Q Consensus 487 RAll~~p~ILILDEaTSaLD~~te~~I~~~l~~ 519 (597)
+....++.+|+|||... |++.....+.+.|++
T Consensus 196 ~~~~a~~gvL~LDEi~~-l~~~~q~~Ll~~Le~ 227 (604)
T 3k1j_A 196 MIHRAHKGVLFIDEIAT-LSLKMQQSLLTAMQE 227 (604)
T ss_dssp HHHHTTTSEEEETTGGG-SCHHHHHHHHHHHHH
T ss_pred eeeecCCCEEEEechhh-CCHHHHHHHHHHHHc
Confidence 99999999999999998 799999999888874
No 166
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=98.78 E-value=1.1e-09 Score=111.92 Aligned_cols=71 Identities=21% Similarity=0.185 Sum_probs=44.7
Q ss_pred EEEcCCcEEEEEcCCCCCHHHHHHHHhccc-cCCceEEE---cceeCCCCChHHHhcCcEEEeCCCCCCC-----ccHHh
Q psy1502 362 ITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EVEGVIKI---DDIDTEDVPLSKLRSNISIIPQDPVLFS-----GTLRK 432 (597)
Q Consensus 362 l~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I~i---dg~di~~~~~~~lr~~I~~V~Q~~~LF~-----gTI~e 432 (597)
+++.+|++++|+||||+|||||+|.|+|+. +..|+|.+ +|.++.... +.++..+++|+|+|-++. -|+ |
T Consensus 168 ~~~~~G~~~~lvG~sG~GKSTLln~L~g~~~~~~G~I~~~~~~G~~tt~~~-~~~~~~~g~v~dtpg~~~~~l~~lt~-e 245 (307)
T 1t9h_A 168 IPHFQDKTTVFAGQSGVGKSSLLNAISPELGLRTNEISEHLGRGKHTTRHV-ELIHTSGGLVADTPGFSSLEFTDIEE-E 245 (307)
T ss_dssp GGGGTTSEEEEEESHHHHHHHHHHHHCC-------------------CCCC-CEEEETTEEEESSCSCSSCCCTTCCH-H
T ss_pred HhhcCCCEEEEECCCCCCHHHHHHHhcccccccccceeeecCCCcccccHH-HHhhcCCEEEecCCCccccccccCCH-H
Confidence 567799999999999999999999999987 57899999 888876533 222223899999997764 477 8
Q ss_pred hc
Q psy1502 433 NL 434 (597)
Q Consensus 433 NI 434 (597)
|+
T Consensus 246 ~l 247 (307)
T 1t9h_A 246 EL 247 (307)
T ss_dssp HH
T ss_pred HH
Confidence 88
No 167
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=98.77 E-value=1.2e-09 Score=104.47 Aligned_cols=80 Identities=15% Similarity=0.215 Sum_probs=63.2
Q ss_pred eEEEcCCcEEEEEcCCCCCHHHHHHHHhcccc--------------CCceEEEcceeCCCCChHHHhcCcEEEeCCCCCC
Q psy1502 361 NITIHPKEKIGIVGRTGAGKSSLIAAIFRLAE--------------VEGVIKIDDIDTEDVPLSKLRSNISIIPQDPVLF 426 (597)
Q Consensus 361 sl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~~--------------~~G~I~idg~di~~~~~~~lr~~I~~V~Q~~~LF 426 (597)
|+...+|+.++|+||||||||||++.|++.++ ..|+ +||++..-++.+.+++.+ .|+.+++
T Consensus 13 ~~~~~~g~~ivl~GPSGaGKsTL~~~L~~~~~~~~~~~vs~TTR~p~~gE--~~G~~y~fvs~~~f~~~i---~~~~fle 87 (197)
T 3ney_A 13 NLYFQGRKTLVLIGASGVGRSHIKNALLSQNPEKFVYPVPYTTRPPRKSE--EDGKEYHFISTEEMTRNI---SANEFLE 87 (197)
T ss_dssp ---CCSCCEEEEECCTTSSHHHHHHHHHHHCTTTEECCCCEECSCCCTTC--CTTSSCEECCHHHHHHHH---HTTCEEE
T ss_pred cCCCCCCCEEEEECcCCCCHHHHHHHHHhhCCccEEeeecccccCCcCCe--eccccceeccHHHhhhhh---hhhhhhh
Confidence 44556899999999999999999999998764 2576 799999999999999876 6999999
Q ss_pred CccHHhhcccCCCCChHHHHHH
Q psy1502 427 SGTLRKNLDPFEKYPDYVLWTA 448 (597)
Q Consensus 427 ~gTI~eNI~~~~~~~~e~i~~a 448 (597)
.+++.+|. +|. +.+.+.++
T Consensus 88 ~~~~~~n~-YGt--~~~~v~~~ 106 (197)
T 3ney_A 88 FGSYQGNM-FGT--KFETVHQI 106 (197)
T ss_dssp EEEETTEE-EEE--EHHHHHHH
T ss_pred hhhhhcee-ccc--chhhHHHH
Confidence 99999995 552 33444443
No 168
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=98.77 E-value=3.1e-08 Score=107.21 Aligned_cols=171 Identities=13% Similarity=0.156 Sum_probs=107.6
Q ss_pred ccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc-cCCc-eEEEcceeCCCCChHHHhcCc-----EEEeCCCCCCC
Q psy1502 355 RVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EVEG-VIKIDDIDTEDVPLSKLRSNI-----SIIPQDPVLFS 427 (597)
Q Consensus 355 ~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G-~I~idg~di~~~~~~~lr~~I-----~~V~Q~~~LF~ 427 (597)
+.|+++..-+++|+.+.|.|++|+|||||+.-+++.. +..| .+.+.+. +.+.+.+.+++ ++-+|+
T Consensus 191 ~~LD~~~gGl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s~---E~s~~~l~~r~~~~~~~~~~~~----- 262 (454)
T 2r6a_A 191 TELDRMTSGFQRSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFSL---EMSAQQLVMRMLCAEGNINAQN----- 262 (454)
T ss_dssp HHHHHHHSSBCTTCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEES---SSCHHHHHHHHHHHHHTCCHHH-----
T ss_pred HHHHhhcCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEEC---CCCHHHHHHHHHHHHcCCCHHH-----
Confidence 4678887789999999999999999999999998855 3345 5666443 34445554432 222211
Q ss_pred ccHHhhcccCCCCChHHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHHHHHHc--cCCCEEEeecCCCCC
Q psy1502 428 GTLRKNLDPFEKYPDYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIV--RNNVILVLDEATANV 505 (597)
Q Consensus 428 gTI~eNI~~~~~~~~e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaIARAll--~~p~ILILDEaTSaL 505 (597)
+.. ...++++..++.+.+ +.+.. .+-.+.+ ...+|++|.+ +.||++. .+|+++|+|+++.-.
T Consensus 263 ------l~~-g~l~~~~~~~~~~a~---~~l~~---~~l~i~d-~~~~s~~~i~--~~~~~l~~~~~~~livID~l~~~~ 326 (454)
T 2r6a_A 263 ------LRT-GKLTPEDWGKLTMAM---GSLSN---AGIYIDD-TPSIRVSDIR--AKCRRLKQESGLGMIVIDYLQLIQ 326 (454)
T ss_dssp ------HHT-SCCCHHHHHHHHHHH---HHHHS---SCEEEEC-CTTCCHHHHH--HHHHHHHTTTCCCEEEEECGGGSC
T ss_pred ------Hhc-CCCCHHHHHHHHHHH---HHHhc---CCEEEEC-CCCCCHHHHH--HHHHHHHHHcCCCEEEEccHHHhc
Confidence 111 134555544333222 11211 1222222 3478999875 6778876 589999999999877
Q ss_pred CHH--------HHHHHHHHHHHhcC--CcEEEEecc-----------Cch--------hH-hhcCEEEEEeCCe
Q psy1502 506 DPK--------TDLLIQRTIRKKFA--DCTVLTIAH-----------RLH--------TI-MDSDKVLVMDSGV 549 (597)
Q Consensus 506 D~~--------te~~I~~~l~~~~~--~~TvI~IaH-----------rls--------ti-~~~D~Iivl~~G~ 549 (597)
++. .-..+.+.|+.+.+ ++|+|+++| |+. .+ ..||.|+.|..++
T Consensus 327 ~~~~~~~~~~~~i~~i~~~Lk~lAke~~i~vi~~sql~r~~e~~~~~~p~lsdlr~Sg~ie~~aD~vi~l~r~~ 400 (454)
T 2r6a_A 327 GSGRSKENRQQEVSEISRSLKALARELEVPVIALSQLSRSVEQRQDKRPMMSDIRESGSIEQDADIVAFLYRDD 400 (454)
T ss_dssp CSCC----CHHHHHHHHHHHHHHHHHHTCCEEEEECCCTTSTTC---CCCTHHHHTTCSHHHHCSEEEEEEETT
T ss_pred cCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEecCCcccccCCCCCCcHHHhhccchhHhhCCEEEEEeccc
Confidence 431 12455566665532 789999999 132 34 3599999997654
No 169
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=98.76 E-value=2.4e-09 Score=103.03 Aligned_cols=101 Identities=21% Similarity=0.214 Sum_probs=64.1
Q ss_pred EEEcCCcEEEEEcCCCCCHHHHHHHHhccccCCceEEEcceeCCCCChHHHhcCcEEEeCCCCCCCccHHhhcccCC-CC
Q psy1502 362 ITIHPKEKIGIVGRTGAGKSSLIAAIFRLAEVEGVIKIDDIDTEDVPLSKLRSNISIIPQDPVLFSGTLRKNLDPFE-KY 440 (597)
Q Consensus 362 l~I~~G~~vaIVG~SGsGKSTL~~LL~~l~~~~G~I~idg~di~~~~~~~lr~~I~~V~Q~~~LF~gTI~eNI~~~~-~~ 440 (597)
=++++|+.++|+|+|||||||++++|.+.++ .+.+++||+++|++ +|+.... ..
T Consensus 16 ~~~~~~~~i~i~G~~GsGKSTl~~~L~~~~~----------------------~~~~i~~D~~~~~~---~~~~~~~~~~ 70 (207)
T 2qt1_A 16 PRGSKTFIIGISGVTNSGKTTLAKNLQKHLP----------------------NCSVISQDDFFKPE---SEIETDKNGF 70 (207)
T ss_dssp CCSCCCEEEEEEESTTSSHHHHHHHHHTTST----------------------TEEEEEGGGGBCCG---GGSCBCTTSC
T ss_pred ccCCCCeEEEEECCCCCCHHHHHHHHHHhcC----------------------CcEEEeCCccccCH---hHhhccccCC
Confidence 3678899999999999999999999999764 48899999999986 6775432 22
Q ss_pred ChHHHHHHHHHhcHHHHHHhc-CCCchhhhCCCCCCChhHHHHHHHHHHHccCCCEEEeecC
Q psy1502 441 PDYVLWTALQEVELKDMIMEG-AGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEA 501 (597)
Q Consensus 441 ~~e~i~~a~~~a~l~~fI~~l-~GldT~vge~G~~LSGGQrQRIaIARAll~~p~ILILDEa 501 (597)
.+.++.+++....+.+++... ++. + -..++.|.++ ..+++++|+|=+
T Consensus 71 ~~~~~~~~~~~~~l~~~i~~~l~~~---~---~~~~~~~~~~--------~~~~~~vi~eg~ 118 (207)
T 2qt1_A 71 LQYDVLEALNMEKMMSAISCWMESA---R---HSVVSTDQES--------AEEIPILIIEGF 118 (207)
T ss_dssp BCCSSGGGBCHHHHHHHHHHHHHHH---T---TSSCCC-------------CCCCEEEEECT
T ss_pred ChhHHHHHhHHHHHHHHHHHHHhCC---C---CCCcCCCeee--------cCCCCEEEEeeh
Confidence 222233344444555555442 211 0 1134555554 456788888644
No 170
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=98.75 E-value=5.4e-11 Score=125.22 Aligned_cols=133 Identities=16% Similarity=0.177 Sum_probs=89.6
Q ss_pred CccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccccCCceEEEcceeCCCCChHHHhcCcEEEeCCCCCCCccHHhh
Q psy1502 354 PRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAEVEGVIKIDDIDTEDVPLSKLRSNISIIPQDPVLFSGTLRKN 433 (597)
Q Consensus 354 ~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~~~~G~I~idg~di~~~~~~~lr~~I~~V~Q~~~LF~gTI~eN 433 (597)
.++|+++|+.+++|+.++|+||+|||||||+++|++.+ +|.+..-+ .+.+.++..+++++|...+ +.|+
T Consensus 156 ~~~l~~~~~~i~~~~~i~l~G~~GsGKSTl~~~l~~~~--~g~~~~~~-----~~~~~~~~~lg~~~q~~~~----l~dd 224 (377)
T 1svm_A 156 YDFLKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLELC--GGKALNVN-----LPLDRLNFELGVAIDQFLV----VFED 224 (377)
T ss_dssp HHHHHHHHHCCTTCCEEEEECSTTSSHHHHHHHHHHHH--CCEEECCS-----SCTTTHHHHHGGGTTCSCE----EETT
T ss_pred HHHHHhcccccCCCCEEEEECCCCCCHHHHHHHHHhhc--CCcEEEEe-----ccchhHHHHHHHhcchhHH----HHHH
Confidence 35899999999999999999999999999999999864 57765411 1112234458889998764 3455
Q ss_pred cccCCC----CCh-HHHHHHHHHhcHHHHHHhcCC-----Cch-------------hhhCCCCCCChhHHHHHHHHHHHc
Q psy1502 434 LDPFEK----YPD-YVLWTALQEVELKDMIMEGAG-----LNM-------------TVYEGGTNFSVGQRQLICLARAIV 490 (597)
Q Consensus 434 I~~~~~----~~~-e~i~~a~~~a~l~~fI~~l~G-----ldT-------------~vge~G~~LSGGQrQRIaIARAll 490 (597)
++.... ... ..+. ....+.+.+ +| .+| .+..+-..+++|.+||++.+.+++
T Consensus 225 ~~~~~~~~r~l~~~~~~~---~~~~l~~~l---dG~v~v~~~tn~~~~l~alf~pg~ld~~~~~l~~~~~~rl~~~~~l~ 298 (377)
T 1svm_A 225 VKGTGGESRDLPSGQGIN---NLDNLRDYL---DGSVKVNLEKKHLNKRTQIFPPGIVTMNEYSVPKTLQARFVKQIDFR 298 (377)
T ss_dssp CCCSTTTTTTCCCCSHHH---HHHTTHHHH---HCSSCEEECCSSSCCEEECCCCEEEEECSCCCCHHHHTTEEEEEECC
T ss_pred HHHHHHHHhhccccCcch---HHHHHHHHh---cCCCeEeeccCchhhHHHhhcCcccChhHHhhcHHHHHHHhhhhccC
Confidence 543211 110 1110 111222222 22 111 244566778999999999999999
Q ss_pred cCCCEEE-eecCCC
Q psy1502 491 RNNVILV-LDEATA 503 (597)
Q Consensus 491 ~~p~ILI-LDEaTS 503 (597)
.+|++++ ||+|+.
T Consensus 299 ~~pDLliyLd~~~~ 312 (377)
T 1svm_A 299 PKDYLKHCLERSEF 312 (377)
T ss_dssp CCHHHHHHHHTCTH
T ss_pred CCCCeEEEEeCCHH
Confidence 9999998 999987
No 171
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=98.74 E-value=3.1e-08 Score=103.34 Aligned_cols=137 Identities=19% Similarity=0.183 Sum_probs=80.4
Q ss_pred EEcCCcEEEEEcCCCCCHHHHHHHHhccc-cCCce-EEEcceeCCCCChHHHhcCcEEEeCCCCCCCccHHhhcccCCCC
Q psy1502 363 TIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EVEGV-IKIDDIDTEDVPLSKLRSNISIIPQDPVLFSGTLRKNLDPFEKY 440 (597)
Q Consensus 363 ~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~-I~idg~di~~~~~~~lr~~I~~V~Q~~~LF~gTI~eNI~~~~~~ 440 (597)
-+++|+.+.|.||+|||||||+.-++.-. ...|. ++++... ..+. .+.+++++.+|+ +......
T Consensus 57 Gl~~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~E~--~~~~-~~a~~lG~~~~~-----------l~i~~~~ 122 (349)
T 2zr9_A 57 GLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEH--ALDP-EYAKKLGVDTDS-----------LLVSQPD 122 (349)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSC--CCCH-HHHHHTTCCGGG-----------CEEECCS
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCC--CcCH-HHHHHcCCCHHH-----------eEEecCC
Confidence 47899999999999999999988887543 33343 3444321 1111 112223322221 1110000
Q ss_pred ChHHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHHHHHHccC--CCEEEeecCCCCC----------CH-
Q psy1502 441 PDYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRN--NVILVLDEATANV----------DP- 507 (597)
Q Consensus 441 ~~e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaIARAll~~--p~ILILDEaTSaL----------D~- 507 (597)
++ .|-+.+++++.++ |+++|+||+++-+ |+
T Consensus 123 -----------------------------------~~--e~~l~~~~~l~~~~~~~lIVIDsl~~l~~~~e~~~~~gd~~ 165 (349)
T 2zr9_A 123 -----------------------------------TG--EQALEIADMLVRSGALDIIVIDSVAALVPRAEIEGEMGDSH 165 (349)
T ss_dssp -----------------------------------SH--HHHHHHHHHHHTTTCCSEEEEECGGGCCCHHHHTTC----C
T ss_pred -----------------------------------CH--HHHHHHHHHHHhcCCCCEEEEcChHhhcchhhhccccccch
Confidence 11 2345578888765 9999999999998 32
Q ss_pred --HHHHHHHHHHHHhc-----CCcEEEEeccCch----------------hHh-hcCEEEEEeCCeE
Q psy1502 508 --KTDLLIQRTIRKKF-----ADCTVLTIAHRLH----------------TIM-DSDKVLVMDSGVA 550 (597)
Q Consensus 508 --~te~~I~~~l~~~~-----~~~TvI~IaHrls----------------ti~-~~D~Iivl~~G~I 550 (597)
..++.+.+.+.++. .++|+|+++|-.. .++ .||.++.+..+++
T Consensus 166 ~~~q~r~~~~~l~~L~~~a~~~~~tVI~inh~~~~~~~~~~~p~~~~gg~~l~~~ad~~l~lrr~~~ 232 (349)
T 2zr9_A 166 VGLQARLMSQALRKMTGALNNSGTTAIFINELREKIGVMFGSPETTTGGKALKFYASVRLDVRRIET 232 (349)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHTCEEEEEEECC-----------CCSSHHHHHHHCSEEEEEEEEEE
T ss_pred hhHHHHHHHHHHHHHHHHHHHhCCEEEEEeccccccCcccCCCcccCCchHhhhccceEEEEEEeee
Confidence 11223444444331 3789999999543 143 5899888876543
No 172
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=98.69 E-value=1.9e-09 Score=101.65 Aligned_cols=67 Identities=13% Similarity=0.218 Sum_probs=54.4
Q ss_pred cCCcEEEEEcCCCCCHHHHHHHHhcccc--CCceEE----------EcceeCCCCChHHHhcCcEEEeCCCCCCCccHHh
Q psy1502 365 HPKEKIGIVGRTGAGKSSLIAAIFRLAE--VEGVIK----------IDDIDTEDVPLSKLRSNISIIPQDPVLFSGTLRK 432 (597)
Q Consensus 365 ~~G~~vaIVG~SGsGKSTL~~LL~~l~~--~~G~I~----------idg~di~~~~~~~lr~~I~~V~Q~~~LF~gTI~e 432 (597)
.+|+.++|+||||||||||+++|+++++ ..|.|. +||.+...++.+.+++. ++|+.+++.+++.+
T Consensus 3 ~~g~~i~i~GpsGsGKSTL~~~L~~~~~~~~~~~i~~ttr~~~~ge~~g~~~~~~~~~~~~~~---~~~~~~l~~~~~~~ 79 (180)
T 1kgd_A 3 HMRKTLVLLGAHGVGRRHIKNTLITKHPDRFAYPIPHTTRPPKKDEENGKNYYFVSHDQMMQD---ISNNEYLEYGSHED 79 (180)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHHCTTTEECCCCEECSCC---CCBTTTBEECCHHHHHHH---HHTTCEEEEEEETT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCCccEEEeeeccCCCCCccccCCCeeEEeCHHHHHHH---HHcCCceEEEEEcC
Confidence 3799999999999999999999999875 345554 36777777777777764 57889999999999
Q ss_pred hc
Q psy1502 433 NL 434 (597)
Q Consensus 433 NI 434 (597)
|.
T Consensus 80 n~ 81 (180)
T 1kgd_A 80 AM 81 (180)
T ss_dssp EE
T ss_pred cc
Confidence 94
No 173
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=98.66 E-value=1.9e-09 Score=107.27 Aligned_cols=51 Identities=18% Similarity=0.300 Sum_probs=35.3
Q ss_pred cEEEEee-EEEeCCCCccceeeeEEEcC---CcEEEEEcCCCCCHHHHHHHHhcc
Q psy1502 340 KIEFQNT-NVRYLSGPRVIKNLNITIHP---KEKIGIVGRTGAGKSSLIAAIFRL 390 (597)
Q Consensus 340 ~I~f~nV-sf~Y~~~~~vL~~isl~I~~---G~~vaIVG~SGsGKSTL~~LL~~l 390 (597)
.++++|| +|+|.+..++|+|+||+|++ |+.++|+|++||||||+.++|.+.
T Consensus 17 ~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~~ 71 (250)
T 3nwj_A 17 LLETGSLLHSPFDEEQQILKKKAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMARS 71 (250)
T ss_dssp ---------------CHHHHHHHHTTHHHHTTCCEEEECSTTSCHHHHHHHHHHH
T ss_pred ceEEcceeeEEecCcchhhhhhhhhhhhhcCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 4899999 99995456799999999999 999999999999999999999873
No 174
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=98.62 E-value=1.4e-08 Score=96.88 Aligned_cols=139 Identities=16% Similarity=0.173 Sum_probs=72.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhccc------cC------CceEEEcceeCC----CCC-hHHHhcCcEEEeCCCCCCCccHH
Q psy1502 369 KIGIVGRTGAGKSSLIAAIFRLA------EV------EGVIKIDDIDTE----DVP-LSKLRSNISIIPQDPVLFSGTLR 431 (597)
Q Consensus 369 ~vaIVG~SGsGKSTL~~LL~~l~------~~------~G~I~idg~di~----~~~-~~~lr~~I~~V~Q~~~LF~gTI~ 431 (597)
+++|+|++|||||||++.++|.. |+ .|.|.++|.++. +.. .+.++.......|++..
T Consensus 7 kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~------ 80 (199)
T 2f9l_A 7 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRITSAYYRGAVG------ 80 (199)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEEEEEEEEECSSGGGTTCCCHHHHTTCSE------
T ss_pred EEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHHhcCCE------
Confidence 68999999999999999999862 22 578999997652 222 22233222222222110
Q ss_pred hhcccCCCCChHHHHHHHHHhcHHHHHHhc--CCCch-hhhCCCCCCChhHHHHHHHHHHHccCCCEEEeecCCCCCCHH
Q psy1502 432 KNLDPFEKYPDYVLWTALQEVELKDMIMEG--AGLNM-TVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATANVDPK 508 (597)
Q Consensus 432 eNI~~~~~~~~e~i~~a~~~a~l~~fI~~l--~GldT-~vge~G~~LSGGQrQRIaIARAll~~p~ILILDEaTSaLD~~ 508 (597)
+.+--+.++..-.+.++. ..+.+... .+.-. .++.+ ..|..-.......||++.++|+++++| |||+|.+
T Consensus 81 --~i~v~d~~~~~s~~~~~~--~~~~~~~~~~~~~~i~~v~nK-~Dl~~~~~~~~~~a~~l~~~~~~~~~d--~Sal~~~ 153 (199)
T 2f9l_A 81 --ALLVYDIAKHLTYENVER--WLKELRDHADSNIVIMLVGNK-SDLRHLRAVPTDEARAFAEKNNLSFIE--TSALDST 153 (199)
T ss_dssp --EEEEEETTCHHHHHTHHH--HHHHHHHHSCTTCEEEEEEEC-TTCGGGCCSCHHHHHHHHHHTTCEEEE--CCTTTCT
T ss_pred --EEEEEECcCHHHHHHHHH--HHHHHHHhcCCCCeEEEEEEC-cccccccCcCHHHHHHHHHHcCCeEEE--EeCCCCC
Confidence 000011111111110000 00111110 11100 11221 112111112346699999999999999 9999999
Q ss_pred HHHHHHHHHHHh
Q psy1502 509 TDLLIQRTIRKK 520 (597)
Q Consensus 509 te~~I~~~l~~~ 520 (597)
.-..+.+.|.+.
T Consensus 154 ~i~~l~~~l~~~ 165 (199)
T 2f9l_A 154 NVEEAFKNILTE 165 (199)
T ss_dssp THHHHHHHHHHH
T ss_pred CHHHHHHHHHHH
Confidence 888887777554
No 175
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=98.55 E-value=3.9e-08 Score=94.08 Aligned_cols=60 Identities=18% Similarity=0.215 Sum_probs=45.8
Q ss_pred eeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccccCCceE--EEcceeCC
Q psy1502 345 NTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAEVEGVI--KIDDIDTE 405 (597)
Q Consensus 345 nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~~~~G~I--~idg~di~ 405 (597)
|++..+. ...+.+..++..++|+.++|+|+||||||||+++|.+.+...|.+ .+||.++.
T Consensus 4 ~~~~~~~-~~~~~~~~~~~~~~g~~i~l~G~sGsGKSTl~~~La~~l~~~G~~~~~~d~d~~~ 65 (200)
T 3uie_A 4 NIKWHEC-SVEKVDRQRLLDQKGCVIWVTGLSGSGKSTLACALNQMLYQKGKLCYILDGDNVR 65 (200)
T ss_dssp ------C-CCCHHHHHHHHTSCCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHT
T ss_pred CCccccc-ccCHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHHHhcCceEEEecCchhh
Confidence 4444432 234677888888999999999999999999999999977677988 89987664
No 176
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=98.54 E-value=1.1e-07 Score=102.88 Aligned_cols=125 Identities=19% Similarity=0.216 Sum_probs=81.2
Q ss_pred CccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccccCCceEEEcceeCCCCChHHHhcCcEEEeCCCCCCCccHHhh
Q psy1502 354 PRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAEVEGVIKIDDIDTEDVPLSKLRSNISIIPQDPVLFSGTLRKN 433 (597)
Q Consensus 354 ~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~~~~G~I~idg~di~~~~~~~lr~~I~~V~Q~~~LF~gTI~eN 433 (597)
+..++++++.+++| +.|+||+|+|||||++.+.+-.. . .+-++ +..+.
T Consensus 38 ~~~~~~~g~~~p~g--vLL~GppGtGKT~Laraia~~~~---------~------------~f~~i---------s~~~~ 85 (476)
T 2ce7_A 38 PSKFNRIGARMPKG--ILLVGPPGTGKTLLARAVAGEAN---------V------------PFFHI---------SGSDF 85 (476)
T ss_dssp THHHHTTTCCCCSE--EEEECCTTSSHHHHHHHHHHHHT---------C------------CEEEE---------EGGGT
T ss_pred hHHHhhcCCCCCCe--EEEECCCCCCHHHHHHHHHHHcC---------C------------CeeeC---------CHHHH
Confidence 44677888888888 99999999999999999987321 0 00011 00011
Q ss_pred cccCCCCChHHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHHHHHHccCCCEEEeecCC----------C
Q psy1502 434 LDPFEKYPDYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEAT----------A 503 (597)
Q Consensus 434 I~~~~~~~~e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaIARAll~~p~ILILDEaT----------S 503 (597)
.. ..+| .|++++|-.+++|....|.||++||+. +
T Consensus 86 ~~------------------------------~~~g------~~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~ 129 (476)
T 2ce7_A 86 VE------------------------------LFVG------VGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLG 129 (476)
T ss_dssp TT------------------------------CCTT------HHHHHHHHHHHHHHHTCSEEEEEETGGGTCCC------
T ss_pred HH------------------------------HHhc------ccHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccC
Confidence 00 0112 267899999999999999999999994 3
Q ss_pred CCCHHHHHHHHHHHHHh-----cCCcEEEEeccCchhHh-------hcCEEEEEe
Q psy1502 504 NVDPKTDLLIQRTIRKK-----FADCTVLTIAHRLHTIM-------DSDKVLVMD 546 (597)
Q Consensus 504 aLD~~te~~I~~~l~~~-----~~~~TvI~IaHrlsti~-------~~D~Iivl~ 546 (597)
+.|.+.++.+.+.+..+ ..+..+|..||+++.+. .+|+.+.++
T Consensus 130 g~~~~~~~~l~~LL~~ld~~~~~~~viVIaaTn~~~~Ld~allR~gRFd~~i~i~ 184 (476)
T 2ce7_A 130 GGHDEREQTLNQLLVEMDGFDSKEGIIVMAATNRPDILDPALLRPGRFDKKIVVD 184 (476)
T ss_dssp ---CHHHHHHHHHHHHHHHSCGGGTEEEEEEESCGGGSCGGGGSTTSSCEEEECC
T ss_pred cCcHHHHHHHHHHHHHHhccCCCCCEEEEEecCChhhhchhhcccCcceeEeecC
Confidence 56666665555554433 23568899999986542 467666554
No 177
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=98.46 E-value=2e-08 Score=96.22 Aligned_cols=60 Identities=15% Similarity=0.155 Sum_probs=42.9
Q ss_pred eEEEcCCcEEEEEcCCCCCHHHHHHHHhccccCCceEEEcceeCCCCChHHHhcCcEEEeCCCC
Q psy1502 361 NITIHPKEKIGIVGRTGAGKSSLIAAIFRLAEVEGVIKIDDIDTEDVPLSKLRSNISIIPQDPV 424 (597)
Q Consensus 361 sl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~~~~G~I~idg~di~~~~~~~lr~~I~~V~Q~~~ 424 (597)
.++.++|+.++|+|++|||||||+++|.+.+ |.+.+||.++..- ....+..+++++|++.
T Consensus 23 ~m~~~~g~~i~l~G~~GsGKSTl~~~L~~~~---g~~~i~~d~~~~~-~~~~~~~~g~~~~~~~ 82 (200)
T 4eun_A 23 MMTGEPTRHVVVMGVSGSGKTTIAHGVADET---GLEFAEADAFHSP-ENIATMQRGIPLTDED 82 (200)
T ss_dssp -----CCCEEEEECCTTSCHHHHHHHHHHHH---CCEEEEGGGGSCH-HHHHHHHTTCCCCHHH
T ss_pred hhcCCCCcEEEEECCCCCCHHHHHHHHHHhh---CCeEEcccccccH-HHHHHHhcCCCCCCcc
Confidence 3667899999999999999999999999876 9999999887531 1112235677777643
No 178
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=98.45 E-value=2.2e-08 Score=104.08 Aligned_cols=54 Identities=24% Similarity=0.199 Sum_probs=51.0
Q ss_pred cccEEEEeeEEEeCCCCccce--------------eeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc
Q psy1502 338 LGKIEFQNTNVRYLSGPRVIK--------------NLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA 391 (597)
Q Consensus 338 ~~~I~f~nVsf~Y~~~~~vL~--------------~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~ 391 (597)
.+.|+|+||+|.||.++.+|+ |+++.|.+|++++|+||+|+|||||+++|.++.
T Consensus 131 ~~ri~Fe~ltp~yP~er~~Le~~~~~~~~tGiraID~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~i 198 (422)
T 3ice_A 131 RNKILFENLTPLHANSRLRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSI 198 (422)
T ss_dssp TTSCCTTTSCEESCCSBCCCCCTTCCTTHHHHHHHHHHSCCBTTCEEEEECCSSSSHHHHHHHHHHHH
T ss_pred cCCceeccccccCCCCccccccCCCCcccccceeeeeeeeecCCcEEEEecCCCCChhHHHHHHHHHH
Confidence 468999999999998888999 999999999999999999999999999999975
No 179
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=98.43 E-value=9.7e-08 Score=100.15 Aligned_cols=141 Identities=20% Similarity=0.156 Sum_probs=84.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhccc------------cCCceEEEcceeCCCCChHHHhcCcEEEeCCCCC----CCccHH-
Q psy1502 369 KIGIVGRTGAGKSSLIAAIFRLA------------EVEGVIKIDDIDTEDVPLSKLRSNISIIPQDPVL----FSGTLR- 431 (597)
Q Consensus 369 ~vaIVG~SGsGKSTL~~LL~~l~------------~~~G~I~idg~di~~~~~~~lr~~I~~V~Q~~~L----F~gTI~- 431 (597)
.++|||++|||||||++.|.+.. +..|.|.++|.++. +....|++.|.|.- |..|+.
T Consensus 181 ~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g~~v~------l~DT~G~i~~lp~~lve~f~~tl~~ 254 (364)
T 2qtf_A 181 SIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINNRKIM------LVDTVGFIRGIPPQIVDAFFVTLSE 254 (364)
T ss_dssp EEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETTEEEE------EEECCCBCSSCCGGGHHHHHHHHHG
T ss_pred EEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECCEEEE------EEeCCCchhcCCHHHHHHHHHHHHH
Confidence 49999999999999999999853 23589999997653 33456766664431 222322
Q ss_pred ----hhcccCCCCChHH--HHHHHHHhcHHHHHHhc--CCCc-hhhhCCCCCCChhHHHHHHHH----HHH-ccCCCEEE
Q psy1502 432 ----KNLDPFEKYPDYV--LWTALQEVELKDMIMEG--AGLN-MTVYEGGTNFSVGQRQLICLA----RAI-VRNNVILV 497 (597)
Q Consensus 432 ----eNI~~~~~~~~e~--i~~a~~~a~l~~fI~~l--~Gld-T~vge~G~~LSGGQrQRIaIA----RAl-l~~p~ILI 497 (597)
+++.+.-++++.. ..+..+ ...+.+..+ .+.- -.|+.+--.+|+|++||+.++ +++ ..+|++
T Consensus 255 ~~~aD~il~VvD~s~~~~~~~~~~~--~~~~~L~~l~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~l~~~l~~~~~~~-- 330 (364)
T 2qtf_A 255 AKYSDALILVIDSTFSENLLIETLQ--SSFEILREIGVSGKPILVTLNKIDKINGDLYKKLDLVEKLSKELYSPIFDV-- 330 (364)
T ss_dssp GGGSSEEEEEEETTSCHHHHHHHHH--HHHHHHHHHTCCSCCEEEEEECGGGCCSCHHHHHHHHHHHHHHHCSCEEEE--
T ss_pred HHhCCEEEEEEECCCCcchHHHHHH--HHHHHHHHhCcCCCCEEEEEECCCCCCchHHHHHHHHHHHHHHhcCCCCcE--
Confidence 1222211222211 211111 112233332 1221 123555556788999988887 776 545565
Q ss_pred eecCCCCCCHHHHHHHHHHHHHhc
Q psy1502 498 LDEATANVDPKTDLLIQRTIRKKF 521 (597)
Q Consensus 498 LDEaTSaLD~~te~~I~~~l~~~~ 521 (597)
+||||+|.+.-..+.+.|.+..
T Consensus 331 --~~~SA~~g~gi~~L~~~I~~~l 352 (364)
T 2qtf_A 331 --IPISALKRTNLELLRDKIYQLA 352 (364)
T ss_dssp --EECBTTTTBSHHHHHHHHHHHH
T ss_pred --EEEECCCCcCHHHHHHHHHHHh
Confidence 8999999998888888876643
No 180
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=98.41 E-value=6.7e-08 Score=92.39 Aligned_cols=62 Identities=16% Similarity=0.177 Sum_probs=40.0
Q ss_pred EEEcCCcEEEEEcCCCCCHHHHHHHHhccc-cCCceEEEcceeCCCCChHHHhcCcEEEeCCCCCC
Q psy1502 362 ITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EVEGVIKIDDIDTEDVPLSKLRSNISIIPQDPVLF 426 (597)
Q Consensus 362 l~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I~idg~di~~~~~~~lr~~I~~V~Q~~~LF 426 (597)
++|++|+.++|+|||||||||++++|.+++ |..| +.+ +...++.. ...+..++|++|++..|
T Consensus 1 m~i~~g~~i~l~G~~GsGKSTl~~~L~~~~~~~~~-~~i-~~~~~~~~-~~~~~~~~~~~~~~~~~ 63 (207)
T 2j41_A 1 MDNEKGLLIVLSGPSGVGKGTVRKRIFEDPSTSYK-YSI-SMTTRQMR-EGEVDGVDYFFKTRDAF 63 (207)
T ss_dssp ---CCCCEEEEECSTTSCHHHHHHHHHHCTTCCEE-CCC-CEECSCCC-TTCCBTTTBEECCHHHH
T ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHHHhhCCCeE-Eec-ccccCCCC-CCccCCCceEEcCHHHH
Confidence 468999999999999999999999999987 5444 222 22222211 11234588888876433
No 181
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=98.41 E-value=7.9e-09 Score=112.53 Aligned_cols=138 Identities=15% Similarity=0.102 Sum_probs=97.0
Q ss_pred EEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccccCCceEEEcceeCCCCChHHHhcCcEEEeC
Q psy1502 342 EFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAEVEGVIKIDDIDTEDVPLSKLRSNISIIPQ 421 (597)
Q Consensus 342 ~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~~~~G~I~idg~di~~~~~~~lr~~I~~V~Q 421 (597)
+++++...|. .+.+++++++.+++| +.|+||+|+|||||++.|.+... .|.+.++|.++.+.......+++..++|
T Consensus 42 ~l~~lv~~l~-~~~~~~~lg~~ip~G--vLL~GppGtGKTtLaraIa~~~~-~~~i~i~g~~~~~~~~g~~~~~v~~lfq 117 (499)
T 2dhr_A 42 ELKEIVEFLK-NPSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR-VPFITASGSDFVEMFVGVGAARVRDLFE 117 (499)
T ss_dssp HHHHHHHHHH-CGGGTTTTSCCCCSE--EEEECSSSSSHHHHHHHHHHHTT-CCEEEEEGGGGTSSCTTHHHHHHHHHTT
T ss_pred HHHHHHHHhh-chhhhhhccCCCCce--EEEECCCCCCHHHHHHHHHHHhC-CCEEEEehhHHHHhhhhhHHHHHHHHHH
Confidence 4555554453 345899999999999 99999999999999999998754 7889999998876555555667888888
Q ss_pred CCC-CCC-ccHHhhcc-cCCC------CChHHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHHHHHHccC
Q psy1502 422 DPV-LFS-GTLRKNLD-PFEK------YPDYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRN 492 (597)
Q Consensus 422 ~~~-LF~-gTI~eNI~-~~~~------~~~e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaIARAll~~ 492 (597)
+.. .+. -.+.|+|. ++.. ...++..+.+ ..++. .|||||+|+..|++|...+
T Consensus 118 ~a~~~~p~il~IDEId~l~~~r~~~~~~~~~e~~~~l-----~~LL~--------------~Ldg~~~~~~viviAatn~ 178 (499)
T 2dhr_A 118 TAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTL-----NQLLV--------------EMDGFEKDTAIVVMAATNR 178 (499)
T ss_dssp TSSSSSSCEEEEECGGGTCCCSSSSTTTSSHHHHHHH-----HHHHH--------------HGGGCCSSCCCEEEECCSC
T ss_pred HHHhcCCCEEEEehHHHHHHhhccCcCCCcHHHHHHH-----HHHHH--------------HhcccccCccEEEEEecCC
Confidence 875 333 35677874 2221 1122222221 12221 2668888999999999999
Q ss_pred CCEEEeecCCCC
Q psy1502 493 NVILVLDEATAN 504 (597)
Q Consensus 493 p~ILILDEaTSa 504 (597)
|++ ||||.-.
T Consensus 179 p~~--LD~aLlr 188 (499)
T 2dhr_A 179 PDI--LDPALLR 188 (499)
T ss_dssp GGG--SCTTTSS
T ss_pred hhh--cCccccc
Confidence 987 8988753
No 182
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=98.34 E-value=2.6e-07 Score=88.48 Aligned_cols=127 Identities=15% Similarity=0.179 Sum_probs=74.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhccccCCceEEEcceeCCCCChHHHhcCcEEEeCCCCCCCccHHhhcccCCCCChHHHHHH
Q psy1502 369 KIGIVGRTGAGKSSLIAAIFRLAEVEGVIKIDDIDTEDVPLSKLRSNISIIPQDPVLFSGTLRKNLDPFEKYPDYVLWTA 448 (597)
Q Consensus 369 ~vaIVG~SGsGKSTL~~LL~~l~~~~G~I~idg~di~~~~~~~lr~~I~~V~Q~~~LF~gTI~eNI~~~~~~~~e~i~~a 448 (597)
.++|+|++||||||+.+.|.++ |...+|+-++ .+.+. ..+ .+.+
T Consensus 4 ~i~l~G~~GsGKST~~~~La~l----g~~~id~d~~--------~~~~~-----------------~~~----~~~~--- 47 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTDL----GVPLVDADVV--------AREVV-----------------AKD----SPLL--- 47 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHTT----TCCEEEHHHH--------HHHTT-----------------CSS----CHHH---
T ss_pred EEEEECCCCCCHHHHHHHHHHC----CCcccchHHH--------HHHHc-----------------cCC----hHHH---
Confidence 6899999999999999999983 6556654222 11110 000 0111
Q ss_pred HHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHHHHHHccCCCEEEeecCCCCCCHHHHHHHHHHHHHhcCCcEEEE
Q psy1502 449 LQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATANVDPKTDLLIQRTIRKKFADCTVLT 528 (597)
Q Consensus 449 ~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaIARAll~~p~ILILDEaTSaLD~~te~~I~~~l~~~~~~~TvI~ 528 (597)
.+.... .|+. .-.++|+.+|..+++.++.+|..+-.+ ++.++|.....+.+.+... .+.++|+
T Consensus 48 ------~~i~~~-------~g~~-~~~~~g~~~r~~l~~~~f~~~~~~~~l--~~~~~p~v~~~~~~~~~~~-~~~~vv~ 110 (206)
T 1jjv_A 48 ------SKIVEH-------FGAQ-ILTEQGELNRAALRERVFNHDEDKLWL--NNLLHPAIRERMKQKLAEQ-TAPYTLF 110 (206)
T ss_dssp ------HHHHHH-------HCTT-CC------CHHHHHHHHHTCHHHHHHH--HHHHHHHHHHHHHHHHHTC-CSSEEEE
T ss_pred ------HHHHHH-------hCHH-HhccCccccHHHHHHHHhCCHHHHHHH--HhccCHHHHHHHHHHHHhc-CCCEEEE
Confidence 111111 1221 224788999999999999988754333 3355666666666656543 3568888
Q ss_pred eccCchhH---hhcCEEEEEeCC
Q psy1502 529 IAHRLHTI---MDSDKVLVMDSG 548 (597)
Q Consensus 529 IaHrlsti---~~~D~Iivl~~G 548 (597)
-+|.+... ..||.+++++-.
T Consensus 111 ~~~~l~e~~~~~~~d~vi~l~~~ 133 (206)
T 1jjv_A 111 VVPLLIENKLTALCDRILVVDVS 133 (206)
T ss_dssp ECTTTTTTTCGGGCSEEEEEECC
T ss_pred EechhhhcCcHhhCCEEEEEECC
Confidence 88877654 569999999753
No 183
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=98.33 E-value=1.6e-07 Score=96.77 Aligned_cols=67 Identities=15% Similarity=0.206 Sum_probs=52.9
Q ss_pred cceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc-cCCceEEEcceeCCCCCh----HHH-----hcCcEEE-eCC
Q psy1502 356 VIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EVEGVIKIDDIDTEDVPL----SKL-----RSNISII-PQD 422 (597)
Q Consensus 356 vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I~idg~di~~~~~----~~l-----r~~I~~V-~Q~ 422 (597)
+++++||++++|+.++++|++|+||||++..|++.+ +..|+|.+.+.|+..... ..| +..+.++ +|.
T Consensus 94 ~~~~l~~~~~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid~D~~r~~a~~ql~~~~~~~~~~~l~vip~~~ 171 (320)
T 1zu4_A 94 KKYRIDFKENRLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAAADTFRAGATQQLEEWIKTRLNNKVDLVKANK 171 (320)
T ss_dssp --CCCCCCTTSCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCCSCHHHHHHHHHHHTTTSCTTEEEECCSS
T ss_pred cccCccccCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHhccccCCceEEeCCC
Confidence 346788888999999999999999999999999977 467999999988765431 344 5678888 554
No 184
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=98.31 E-value=9.5e-07 Score=92.42 Aligned_cols=62 Identities=15% Similarity=0.214 Sum_probs=50.5
Q ss_pred CCCChhHHHHHHHHHHHccCCCEEEee-cCCCCCCHHHHHHHHHHHHHhcCCcEEEEec--cCchh
Q psy1502 473 TNFSVGQRQLICLARAIVRNNVILVLD-EATANVDPKTDLLIQRTIRKKFADCTVLTIA--HRLHT 535 (597)
Q Consensus 473 ~~LSGGQrQRIaIARAll~~p~ILILD-EaTSaLD~~te~~I~~~l~~~~~~~TvI~Ia--Hrlst 535 (597)
..+|+|++|++. +.+...++-++++| ++++++|.+....+.+.+.+..+++.+|+|. |++..
T Consensus 230 ~~~~~~~~~~~~-~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~~~piilV~NK~Dl~~ 294 (357)
T 2e87_A 230 SERNEIEKQAIL-ALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFKDLPFLVVINKIDVAD 294 (357)
T ss_dssp TTSCHHHHHHHH-GGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTTTSCEEEEECCTTTCC
T ss_pred hhhhHHHHHHHH-HHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcCCCCEEEEEECcccCC
Confidence 467999999887 66666777788999 9999999999888888888766678888898 77653
No 185
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=98.30 E-value=2.8e-08 Score=109.49 Aligned_cols=69 Identities=19% Similarity=0.199 Sum_probs=52.4
Q ss_pred EEcCCcEEEEEcCCCCCHHHHHHHHhccc-cCCc-eEE-EcceeCCC-------CCh---HHHhcCcEEEeCCCCCCCcc
Q psy1502 363 TIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EVEG-VIK-IDDIDTED-------VPL---SKLRSNISIIPQDPVLFSGT 429 (597)
Q Consensus 363 ~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G-~I~-idg~di~~-------~~~---~~lr~~I~~V~Q~~~LF~gT 429 (597)
.+++|+.++|+|+||||||||+++|++.. +.+| ++. +||.++.+ ++. ..+++++++|+|+. +
T Consensus 365 ~~~~G~iI~LiG~sGSGKSTLar~La~~L~~~~G~~i~~lDgD~~~~~l~~~l~f~~~~r~~~~r~i~~v~q~l-----~ 439 (552)
T 3cr8_A 365 RERQGFTVFFTGLSGAGKSTLARALAARLMEMGGRCVTLLDGDIVRRHLSSELGFSKAHRDVNVRRIGFVASEI-----T 439 (552)
T ss_dssp GGGSCEEEEEEESSCHHHHHHHHHHHHHHHTTCSSCEEEESSHHHHHHTTSSCCCSHHHHHHHHHHHHHHHHHH-----H
T ss_pred ccccceEEEEECCCCChHHHHHHHHHHhhcccCCceEEEECCcHHHHhhccccCCCHHHHHHHHHHHHHHHHHH-----H
Confidence 57899999999999999999999999976 5565 784 99987643 222 23556789999873 4
Q ss_pred HHhhccc
Q psy1502 430 LRKNLDP 436 (597)
Q Consensus 430 I~eNI~~ 436 (597)
..+|+..
T Consensus 440 ~~~~ivi 446 (552)
T 3cr8_A 440 KNRGIAI 446 (552)
T ss_dssp HTTCEEE
T ss_pred hcCCEEE
Confidence 5667643
No 186
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=98.27 E-value=3.1e-07 Score=87.65 Aligned_cols=38 Identities=29% Similarity=0.266 Sum_probs=24.5
Q ss_pred CccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc
Q psy1502 354 PRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA 391 (597)
Q Consensus 354 ~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~ 391 (597)
.++++||||++++|+.++|+|++||||||+++.|.+.+
T Consensus 12 ~~~~~~~~~~~~~~~~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 12 DLGTENLYFQSNAMVRIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp ------------CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCCCceeEecCCCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 46899999999999999999999999999999999754
No 187
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=98.26 E-value=8e-07 Score=93.06 Aligned_cols=41 Identities=24% Similarity=0.434 Sum_probs=31.4
Q ss_pred ccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhc--ccc-CCceEE
Q psy1502 355 RVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFR--LAE-VEGVIK 398 (597)
Q Consensus 355 ~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~--l~~-~~G~I~ 398 (597)
.+|+++++++| .|++||++|||||||++.|.| +.| .+|.++
T Consensus 25 ~~l~~i~~~lp---~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~vT 68 (360)
T 3t34_A 25 SALPTLWDSLP---AIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVT 68 (360)
T ss_dssp CCC----CCCC---EEEEECBTTSSHHHHHHHHHTSCCSCCCSSSCC
T ss_pred cccccccccCC---EEEEECCCCCcHHHHHHHHhCCCcCCCCCCccc
Confidence 48999999998 999999999999999999999 545 356554
No 188
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=98.25 E-value=1.9e-07 Score=90.02 Aligned_cols=67 Identities=21% Similarity=0.207 Sum_probs=50.3
Q ss_pred cCCcEEEEEcCCCCCHHHHHHHHhccccC--CceEE----------EcceeCCCCChHHHhcCcEEEeCCCCCCCccHHh
Q psy1502 365 HPKEKIGIVGRTGAGKSSLIAAIFRLAEV--EGVIK----------IDDIDTEDVPLSKLRSNISIIPQDPVLFSGTLRK 432 (597)
Q Consensus 365 ~~G~~vaIVG~SGsGKSTL~~LL~~l~~~--~G~I~----------idg~di~~~~~~~lr~~I~~V~Q~~~LF~gTI~e 432 (597)
++|+.++|+||||||||||++.|++.+++ .+.+. .+|++....+.+.+++.+ .|+.+++.+++.+
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~~~~~~~~~~~~tr~~~~~e~~g~~y~~~~~~~f~~~~---~~~~~le~~~~~~ 82 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKDPETSFDYSISMTTRLPREGEQDGVDYYFRSREVFEQAI---KDGKMLEYAEYVG 82 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHSTTCCCEECCCEESSCCCTTCCBTTTBEECCHHHHHHHH---HTTCEEEEEEETT
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhCCCcEEEEEecccccCcCcccCCceeEEecHHHHHHHH---hcCcEEEEEEEcc
Confidence 68999999999999999999999998753 23333 356666666666666654 5777777777777
Q ss_pred hc
Q psy1502 433 NL 434 (597)
Q Consensus 433 NI 434 (597)
|.
T Consensus 83 ~~ 84 (208)
T 3tau_A 83 NY 84 (208)
T ss_dssp EE
T ss_pred cc
Confidence 73
No 189
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=98.23 E-value=8.8e-07 Score=91.38 Aligned_cols=27 Identities=22% Similarity=0.349 Sum_probs=25.1
Q ss_pred EEcCCcEEEEEcCCCCCHHHHHHHHhc
Q psy1502 363 TIHPKEKIGIVGRTGAGKSSLIAAIFR 389 (597)
Q Consensus 363 ~I~~G~~vaIVG~SGsGKSTL~~LL~~ 389 (597)
-+++|+.+.|.||+|||||||+.-++.
T Consensus 103 Gl~~G~i~~i~G~~GsGKT~la~~la~ 129 (324)
T 2z43_A 103 GIETRTMTEFFGEFGSGKTQLCHQLSV 129 (324)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHH
T ss_pred CCCCCcEEEEECCCCCCHhHHHHHHHH
Confidence 589999999999999999999998875
No 190
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=98.23 E-value=5.6e-08 Score=95.24 Aligned_cols=64 Identities=16% Similarity=0.073 Sum_probs=49.8
Q ss_pred eEEEcCCcEEEEEcCCCCCHHHHHHHHhccccCCceEEEcceeCCCC------ChHH----HhcCcEEEeCCCCCCC
Q psy1502 361 NITIHPKEKIGIVGRTGAGKSSLIAAIFRLAEVEGVIKIDDIDTEDV------PLSK----LRSNISIIPQDPVLFS 427 (597)
Q Consensus 361 sl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~~~~G~I~idg~di~~~------~~~~----lr~~I~~V~Q~~~LF~ 427 (597)
+.+.++|+.++|+|++||||||++++|.++ .|+|.+++.|.... .... .++.+++++|++.++.
T Consensus 14 ~~~~~~g~~i~i~G~~GsGKSTl~~~L~~~---~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~l~~ 87 (230)
T 2vp4_A 14 YAEGTQPFTVLIEGNIGSGKTTYLNHFEKY---KNDICLLTEPVEKWRNVNGVNLLELMYKDPKKWAMPFQSYVTLT 87 (230)
T ss_dssp BTTTCCCEEEEEECSTTSCHHHHHHTTGGG---TTTEEEECCTHHHHTCBTTBCHHHHHHHSHHHHHHHHHHHHHHH
T ss_pred cCCCCCceEEEEECCCCCCHHHHHHHHHhc---cCCeEEEecCHHHhhcccCCChHHHHHhChHhhhhhhHHHHHHH
Confidence 345689999999999999999999999998 78999998876432 1111 2456889999876654
No 191
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=98.20 E-value=4.3e-07 Score=90.77 Aligned_cols=59 Identities=15% Similarity=0.085 Sum_probs=49.4
Q ss_pred HHHHHHHHccCCCEEEeecCCCCCCHHHHHHHHHHHHHhcCCcEEEEeccCchhHhhcCEEEEEe
Q psy1502 482 LICLARAIVRNNVILVLDEATANVDPKTDLLIQRTIRKKFADCTVLTIAHRLHTIMDSDKVLVMD 546 (597)
Q Consensus 482 RIaIARAll~~p~ILILDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrlsti~~~D~Iivl~ 546 (597)
|++|||||..+|++++||||| |+++...+.+. ...+.|+++++|..+....|||+++|.
T Consensus 88 ~~~la~aL~~~p~illlDEp~---D~~~~~~~l~~---~~~g~~vl~t~H~~~~~~~~dri~~l~ 146 (261)
T 2eyu_A 88 ADALRAALREDPDVIFVGEMR---DLETVETALRA---AETGHLVFGTLHTNTAIDTIHRIVDIF 146 (261)
T ss_dssp HHHHHHHHHHCCSEEEESCCC---SHHHHHHHHHH---HHTTCEEEEEECCSSHHHHHHHHHHTS
T ss_pred HHHHHHHHhhCCCEEEeCCCC---CHHHHHHHHHH---HccCCEEEEEeCcchHHHHHHHHhhhc
Confidence 899999999999999999999 99886544433 345899999999999777789876654
No 192
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=98.15 E-value=4.7e-07 Score=84.83 Aligned_cols=66 Identities=20% Similarity=0.155 Sum_probs=44.5
Q ss_pred eeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhcc-ccCCceEEEcce--eCCCCC----hHHHhcCcEEEeCCCC
Q psy1502 358 KNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRL-AEVEGVIKIDDI--DTEDVP----LSKLRSNISIIPQDPV 424 (597)
Q Consensus 358 ~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l-~~~~G~I~idg~--di~~~~----~~~lr~~I~~V~Q~~~ 424 (597)
+++++++.+| .++|+||||||||||+++|.++ ++..|...-.+. ++-... ....+..|.+++|++.
T Consensus 18 ~~~~~~~~~g-~~~i~G~NGsGKStll~ai~~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~v~~~f~~~~ 90 (182)
T 3kta_A 18 KKVVIPFSKG-FTAIVGANGSGKSNIGDAILFVLGGLSAKAMRASRISDLIFAGSKNEPPAKYAEVAIYFNNED 90 (182)
T ss_dssp SCEEEECCSS-EEEEEECTTSSHHHHHHHHHHHTTCCCTGGGTCSSGGGGBCCCC----CCSCEEEEEEEECTT
T ss_pred ccEEEecCCC-cEEEECCCCCCHHHHHHHHHHHHcCCcccccccccchheeecccccCCCCceEEEEEEEeCCC
Confidence 6789999999 9999999999999999999984 454443322211 110000 0013457999999863
No 193
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=98.15 E-value=2.6e-06 Score=97.90 Aligned_cols=65 Identities=11% Similarity=0.107 Sum_probs=52.6
Q ss_pred CCChhHHHHHHHHHHHccCCCEEEeecCCC-CCCHHHHHHHHHHHHHhcCC-cEEEE-eccCchhHhh
Q psy1502 474 NFSVGQRQLICLARAIVRNNVILVLDEATA-NVDPKTDLLIQRTIRKKFAD-CTVLT-IAHRLHTIMD 538 (597)
Q Consensus 474 ~LSGGQrQRIaIARAll~~p~ILILDEaTS-aLD~~te~~I~~~l~~~~~~-~TvI~-IaHrlsti~~ 538 (597)
-+|+|+.+|..++++++.+++++|+|||.. +||.+.-..+.+.+....++ +++++ .||....+..
T Consensus 190 v~T~G~l~r~l~~~~~l~~~~~lIlDEah~R~ld~d~~~~~l~~l~~~~~~~~iIl~SAT~~~~~l~~ 257 (773)
T 2xau_A 190 YMTDGMLLREAMEDHDLSRYSCIILDEAHERTLATDILMGLLKQVVKRRPDLKIIIMSATLDAEKFQR 257 (773)
T ss_dssp EEEHHHHHHHHHHSTTCTTEEEEEECSGGGCCHHHHHHHHHHHHHHHHCTTCEEEEEESCSCCHHHHH
T ss_pred EECHHHHHHHHhhCccccCCCEEEecCccccccchHHHHHHHHHHHHhCCCceEEEEeccccHHHHHH
Confidence 468999999999999999999999999997 89988777777777666654 45555 4888776653
No 194
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=98.14 E-value=4.5e-06 Score=86.25 Aligned_cols=106 Identities=14% Similarity=0.136 Sum_probs=66.5
Q ss_pred cceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhcccc-CCceEEEcceeCCCCChHHHhcCcEEEeCCCCCCCccHHhhc
Q psy1502 356 VIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAE-VEGVIKIDDIDTEDVPLSKLRSNISIIPQDPVLFSGTLRKNL 434 (597)
Q Consensus 356 vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~~-~~G~I~idg~di~~~~~~~lr~~I~~V~Q~~~LF~gTI~eNI 434 (597)
-|+.+.--+++|+.+.|.|++|+|||||+.-++.-.. ..+. +.|++
T Consensus 35 ~LD~~~gGl~~G~LiiIaG~pG~GKTt~al~ia~~~a~~g~~-------------------Vl~fS-------------- 81 (338)
T 4a1f_A 35 QLDNYTSGFNKGSLVIIGARPSMGKTSLMMNMVLSALNDDRG-------------------VAVFS-------------- 81 (338)
T ss_dssp HHHHHHCSBCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCE-------------------EEEEE--------------
T ss_pred HHHHHhcCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCe-------------------EEEEe--------------
Confidence 4555544689999999999999999999988876432 2222 33322
Q ss_pred ccCCCCChHHHHHHHHHhcHHHHHHhcCCCchhhhCCCCCCChhHHHHHHHHHHHccCCCEEEeecCCCCCC
Q psy1502 435 DPFEKYPDYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATANVD 506 (597)
Q Consensus 435 ~~~~~~~~e~i~~a~~~a~l~~fI~~l~GldT~vge~G~~LSGGQrQRIaIARAll~~p~ILILDEaTSaLD 506 (597)
-+.+.+++..-+-.+ ..|.+..--..| .||++++||++.|...+.+++++|.|+|+..+|
T Consensus 82 ---lEms~~ql~~Rlls~--------~~~v~~~~l~~g-~Ls~~e~~~l~~a~~~l~~~~l~I~d~~~~si~ 141 (338)
T 4a1f_A 82 ---LEMSAEQLALRALSD--------LTSINMHDLESG-RLDDDQWENLAKCFDHLSQKKLFFYDKSYVRIE 141 (338)
T ss_dssp ---SSSCHHHHHHHHHHH--------HHCCCHHHHHHT-CCCHHHHHHHHHHHHHHHHSCEEEECCTTCCHH
T ss_pred ---CCCCHHHHHHHHHHH--------hhCCCHHHHhcC-CCCHHHHHHHHHHHHHHhcCCeEEeCCCCCcHH
Confidence 123444443211110 011111100112 689999999999999999999999998865544
No 195
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=98.09 E-value=2.9e-06 Score=88.29 Aligned_cols=59 Identities=19% Similarity=0.197 Sum_probs=43.2
Q ss_pred EEcCCcEEEEEcCCCCCHHHHHHHHhccc-cCCceE-EEcceeCCCCChHHHhcCcEEEeCCCC
Q psy1502 363 TIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EVEGVI-KIDDIDTEDVPLSKLRSNISIIPQDPV 424 (597)
Q Consensus 363 ~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I-~idg~di~~~~~~~lr~~I~~V~Q~~~ 424 (597)
-+++|+.+.|.||+|||||||+..+++.. +..|.+ +||+.... +. .+.+++++.+|+..
T Consensus 57 Gi~~G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E~s~--~~-~ra~rlgv~~~~l~ 117 (356)
T 3hr8_A 57 GYPRGRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAEHAL--DP-VYAKNLGVDLKSLL 117 (356)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCC--CH-HHHHHHTCCGGGCE
T ss_pred CccCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEeccccc--ch-HHHHHcCCchhhhh
Confidence 38999999999999999999999999865 355655 67765432 22 24566777766543
No 196
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=98.00 E-value=1.3e-05 Score=85.59 Aligned_cols=40 Identities=18% Similarity=0.126 Sum_probs=33.8
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHhccc-cCCceEEEcceeCC
Q psy1502 366 PKEKIGIVGRTGAGKSSLIAAIFRLA-EVEGVIKIDDIDTE 405 (597)
Q Consensus 366 ~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I~idg~di~ 405 (597)
++..++++|++||||||++..|++.+ +..++|.+-+.|..
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~~ 136 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVY 136 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCcc
Confidence 57899999999999999999999876 46788888776653
No 197
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=97.98 E-value=2.2e-05 Score=83.52 Aligned_cols=181 Identities=12% Similarity=0.081 Sum_probs=105.6
Q ss_pred EEEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhcccc-CCceEEEcceeCCCCChH-HHhcCcEE
Q psy1502 341 IEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAE-VEGVIKIDDIDTEDVPLS-KLRSNISI 418 (597)
Q Consensus 341 I~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~~-~~G~I~idg~di~~~~~~-~lr~~I~~ 418 (597)
+..++++..|+... ++++|+ +|+.++++|++||||||++..|++++. ..|+|.+.+.|...-... .++..
T Consensus 77 ~v~~~L~~~~~~~~---~~i~l~--~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~D~~r~aa~~qL~~~--- 148 (425)
T 2ffh_A 77 TVYEALKEALGGEA---RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQLRLL--- 148 (425)
T ss_dssp HHHHHHHHHTTSSC---CCCCCC--SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCSSCHHHHHHHHHH---
T ss_pred HHHHHHHHHhCCCc---ccccCC--CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeeccccCchhHHHHHHh---
Confidence 34556666664322 577887 899999999999999999999999874 678999988887643221 12110
Q ss_pred EeCCCCCCCccHHhhcccC---CCCChHHHHHHHHHhcHHHHHHhc--CCCchhhhCCCCCCC---hhHHHHHHHHHHHc
Q psy1502 419 IPQDPVLFSGTLRKNLDPF---EKYPDYVLWTALQEVELKDMIMEG--AGLNMTVYEGGTNFS---VGQRQLICLARAIV 490 (597)
Q Consensus 419 V~Q~~~LF~gTI~eNI~~~---~~~~~e~i~~a~~~a~l~~fI~~l--~GldT~vge~G~~LS---GGQrQRIaIARAll 490 (597)
.=..|+... ...+..++. .+.+... ++||..+-+-+-.++ ....+..+++|++.
T Consensus 149 ----------~~~~gv~v~~~~~~~~p~~i~--------~~~l~~~~~~~~DvVIIDTaG~l~~d~~l~~el~~i~~~~~ 210 (425)
T 2ffh_A 149 ----------GEKVGVPVLEVMDGESPESIR--------RRVEEKARLEARDLILVDTAGRLQIDEPLMGELARLKEVLG 210 (425)
T ss_dssp ----------HHHHTCCEEECCTTCCHHHHH--------HHHHHHHHHTTCSEEEEECCCCSSCCHHHHHHHHHHHHHHC
T ss_pred ----------cccCCccEEecCCCCCHHHHH--------HHHHHHHHHCCCCEEEEcCCCcccccHHHHHHHHHhhhccC
Confidence 012233321 122333331 1222222 678877655444443 24567778888886
Q ss_pred cCCCEEEeecCCCCCCHHHHHHHHHHHHHhcCCcEEEEeccCch---------hHhh-cCEEEEEeCCeEEE
Q psy1502 491 RNNVILVLDEATANVDPKTDLLIQRTIRKKFADCTVLTIAHRLH---------TIMD-SDKVLVMDSGVAVV 552 (597)
Q Consensus 491 ~~p~ILILDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrls---------ti~~-~D~Iivl~~G~Ive 552 (597)
-++-+|++| |+++.|.... .+.+.+. -+.+-++++|=-. .... .-.|..+-.|+-++
T Consensus 211 pd~vlLVvD-a~tgq~av~~---a~~f~~~-l~i~GVIlTKlD~~~~~g~alsi~~~~g~PI~flg~Ge~~~ 277 (425)
T 2ffh_A 211 PDEVLLVLD-AMTGQEALSV---ARAFDEK-VGVTGLVLTKLDGDARGGAALSARHVTGKPIYFAGVSEKPE 277 (425)
T ss_dssp CSEEEEEEE-GGGTTHHHHH---HHHHHHH-TCCCEEEEESGGGCSSCHHHHHHHHHHCCCEEEEECSSSGG
T ss_pred CceEEEEEe-ccchHHHHHH---HHHHHhc-CCceEEEEeCcCCcccHHHHHHHHHHHCCCEEEEeCCCChh
Confidence 666778888 5556555432 2334432 2457777775211 1111 24566777775444
No 198
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=97.94 E-value=1.1e-06 Score=83.62 Aligned_cols=33 Identities=33% Similarity=0.387 Sum_probs=27.5
Q ss_pred CcEEEEEcCCCCCHHHHHHHHhccccCCceEEEccee
Q psy1502 367 KEKIGIVGRTGAGKSSLIAAIFRLAEVEGVIKIDDID 403 (597)
Q Consensus 367 G~~vaIVG~SGsGKSTL~~LL~~l~~~~G~I~idg~d 403 (597)
...|+|+|++||||||+.++|.+. |...+|.-+
T Consensus 8 ~~~I~i~G~~GsGKST~~~~La~~----g~~~id~d~ 40 (203)
T 1uf9_A 8 PIIIGITGNIGSGKSTVAALLRSW----GYPVLDLDA 40 (203)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHT----TCCEEEHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHC----CCEEEcccH
Confidence 457999999999999999999985 766776544
No 199
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=97.92 E-value=4.1e-06 Score=77.77 Aligned_cols=38 Identities=18% Similarity=0.223 Sum_probs=33.9
Q ss_pred cCCcEEEEEcCCCCCHHHHHHHHhccccCCceEEEcceeCC
Q psy1502 365 HPKEKIGIVGRTGAGKSSLIAAIFRLAEVEGVIKIDDIDTE 405 (597)
Q Consensus 365 ~~G~~vaIVG~SGsGKSTL~~LL~~l~~~~G~I~idg~di~ 405 (597)
.+|+.++|+|++||||||+++.|.+.+ |.+.+|+.++.
T Consensus 6 ~~g~~i~l~G~~GsGKSTl~~~l~~~~---g~~~i~~d~~~ 43 (175)
T 1knq_A 6 HDHHIYVLMGVSGSGKSAVASEVAHQL---HAAFLDGDFLH 43 (175)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHH---TCEEEEGGGGC
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHhh---CcEEEeCcccc
Confidence 568999999999999999999999865 88999987765
No 200
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=97.92 E-value=2.6e-05 Score=81.58 Aligned_cols=44 Identities=18% Similarity=0.110 Sum_probs=33.0
Q ss_pred cCCCEEEeecCCCCCCHHHHHHHHHHHHHhc----CCcEEEEeccCchh
Q psy1502 491 RNNVILVLDEATANVDPKTDLLIQRTIRKKF----ADCTVLTIAHRLHT 535 (597)
Q Consensus 491 ~~p~ILILDEaTSaLD~~te~~I~~~l~~~~----~~~TvI~IaHrlst 535 (597)
.+|.+++|||+... |...-..+.+.+.+.. .+.++|+++|+...
T Consensus 124 ~~~~vlilDE~~~l-~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~~ 171 (389)
T 1fnn_A 124 DLYMFLVLDDAFNL-APDILSTFIRLGQEADKLGAFRIALVIVGHNDAV 171 (389)
T ss_dssp TCCEEEEEETGGGS-CHHHHHHHHHHTTCHHHHSSCCEEEEEEESSTHH
T ss_pred CCeEEEEEECcccc-chHHHHHHHHHHHhCCCCCcCCEEEEEEECCchH
Confidence 45889999999987 8777777766665433 36788999998853
No 201
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=97.89 E-value=5.5e-06 Score=79.10 Aligned_cols=47 Identities=17% Similarity=0.163 Sum_probs=39.0
Q ss_pred EEcCCcEEEEEcCCCCCHHHHHHHHhcccc-CCceEEEcceeCCCCCh
Q psy1502 363 TIHPKEKIGIVGRTGAGKSSLIAAIFRLAE-VEGVIKIDDIDTEDVPL 409 (597)
Q Consensus 363 ~I~~G~~vaIVG~SGsGKSTL~~LL~~l~~-~~G~I~idg~di~~~~~ 409 (597)
..++|+.++|+|+|||||||+++.|.++++ ..|.|.+.+.|....+.
T Consensus 18 ~~~~~~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~~~d~~~~~~ 65 (201)
T 1rz3_A 18 KTAGRLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFHMDDHIVER 65 (201)
T ss_dssp CCSSSEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEGGGGCCCH
T ss_pred ccCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEeccCcccCCH
Confidence 357899999999999999999999999874 57888887777655443
No 202
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=97.86 E-value=2.2e-06 Score=80.11 Aligned_cols=41 Identities=20% Similarity=0.274 Sum_probs=34.0
Q ss_pred cCCcEEEEEcCCCCCHHHHHHHHhccccCCc--eEEEcceeCC
Q psy1502 365 HPKEKIGIVGRTGAGKSSLIAAIFRLAEVEG--VIKIDDIDTE 405 (597)
Q Consensus 365 ~~G~~vaIVG~SGsGKSTL~~LL~~l~~~~G--~I~idg~di~ 405 (597)
++|+.++|+|++||||||++++|.+.+++.| .|.+||..++
T Consensus 3 ~~g~~i~l~G~~GsGKST~~~~L~~~l~~~g~~~i~~d~~~~~ 45 (179)
T 2pez_A 3 MRGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDNIR 45 (179)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHT
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHhhCCCcEEEECChHHH
Confidence 4799999999999999999999999765567 7777876554
No 203
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=97.84 E-value=6.3e-06 Score=85.68 Aligned_cols=27 Identities=19% Similarity=0.199 Sum_probs=25.2
Q ss_pred EEcCCcEEEEEcCCCCCHHHHHHHHhc
Q psy1502 363 TIHPKEKIGIVGRTGAGKSSLIAAIFR 389 (597)
Q Consensus 363 ~I~~G~~vaIVG~SGsGKSTL~~LL~~ 389 (597)
-+++|+.+.|.||+|||||||+.-++.
T Consensus 118 Gl~~G~i~~I~G~~GsGKTtla~~la~ 144 (343)
T 1v5w_A 118 GIESMAITEAFGEFRTGKTQLSHTLCV 144 (343)
T ss_dssp SBCSSEEEEEECCTTCTHHHHHHHHHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999999998876
No 204
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=97.82 E-value=7e-06 Score=83.72 Aligned_cols=148 Identities=16% Similarity=0.115 Sum_probs=77.4
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHhccccCCceEEE-cceeCCCCChHHHhcCcEEEeCCCCCCCccHHhhcccCCCCChHH
Q psy1502 366 PKEKIGIVGRTGAGKSSLIAAIFRLAEVEGVIKI-DDIDTEDVPLSKLRSNISIIPQDPVLFSGTLRKNLDPFEKYPDYV 444 (597)
Q Consensus 366 ~G~~vaIVG~SGsGKSTL~~LL~~l~~~~G~I~i-dg~di~~~~~~~lr~~I~~V~Q~~~LF~gTI~eNI~~~~~~~~e~ 444 (597)
++.+|||||++|+|||||++.|+|... .+ .+.+ ....++..++++++..-+. +.| ++|.. . +
T Consensus 7 r~~~VaIvG~~nvGKSTLln~L~g~~~-----~i~s~~~-----~tTr~~~~gi~~~~~~~i~--~iD--TpG~~--~-~ 69 (301)
T 1ega_A 7 YCGFIAIVGRPNVGKSTLLNKLLGQKI-----SITSRKA-----QTTRHRIVGIHTEGAYQAI--YVD--TPGLH--M-E 69 (301)
T ss_dssp EEEEEEEECSSSSSHHHHHHHHHTCSE-----EECCCCS-----SCCSSCEEEEEEETTEEEE--EES--SSSCC--H-H
T ss_pred cCCEEEEECCCCCCHHHHHHHHHCCCc-----cccCCCC-----CcceeeEEEEEEECCeeEE--EEE--CcCCC--c-c
Confidence 445899999999999999999998531 11 1111 1112345677877643111 111 23321 0 1
Q ss_pred HHHHHHHhcHHHHHHh----cCCCchhh--hCCCCCCChhHHHHHHHHHHHc--cCCCEEEeecCCCCCCHHH-HHHHHH
Q psy1502 445 LWTALQEVELKDMIME----GAGLNMTV--YEGGTNFSVGQRQLICLARAIV--RNNVILVLDEATANVDPKT-DLLIQR 515 (597)
Q Consensus 445 i~~a~~~a~l~~fI~~----l~GldT~v--ge~G~~LSGGQrQRIaIARAll--~~p~ILILDEaTSaLD~~t-e~~I~~ 515 (597)
-...+. .++... +...|-.+ -+... +|+|++ .+++++. ..|.|+++ +-+|... ...+.+
T Consensus 70 ~~~~l~----~~~~~~~~~~l~~~D~vl~Vvd~~~-~~~~~~---~i~~~l~~~~~P~ilvl----NK~D~~~~~~~~~~ 137 (301)
T 1ega_A 70 EKRAIN----RLMNKAASSSIGDVELVIFVVEGTR-WTPDDE---MVLNKLREGKAPVILAV----NKVDNVQEKADLLP 137 (301)
T ss_dssp HHHHHH----HHHTCCTTSCCCCEEEEEEEEETTC-CCHHHH---HHHHHHHSSSSCEEEEE----ESTTTCCCHHHHHH
T ss_pred chhhHH----HHHHHHHHHHHhcCCEEEEEEeCCC-CCHHHH---HHHHHHHhcCCCEEEEE----ECcccCccHHHHHH
Confidence 111111 122111 12223321 22223 999886 5677776 67888888 5677665 444555
Q ss_pred HHHHhcC--C--cEEEEeccCchhHhh-cCEE
Q psy1502 516 TIRKKFA--D--CTVLTIAHRLHTIMD-SDKV 542 (597)
Q Consensus 516 ~l~~~~~--~--~TvI~IaHrlsti~~-~D~I 542 (597)
.+.++.+ + .++.+.||.-..+.. +|.|
T Consensus 138 ~l~~l~~~~~~~~~i~iSA~~g~~v~~l~~~i 169 (301)
T 1ega_A 138 HLQFLASQMNFLDIVPISAETGLNVDTIAAIV 169 (301)
T ss_dssp HHHHHHTTSCCSEEEECCTTTTTTHHHHHHHH
T ss_pred HHHHHHHhcCcCceEEEECCCCCCHHHHHHHH
Confidence 5554432 2 366667777665543 3443
No 205
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=97.80 E-value=6.7e-05 Score=75.75 Aligned_cols=70 Identities=13% Similarity=0.050 Sum_probs=45.9
Q ss_pred hhHHHHHHHHHHHccCCCEEEeecCCCCCCHHH----------HHHHHHHHHHhcC-----CcEEEEeccCchh-----H
Q psy1502 477 VGQRQLICLARAIVRNNVILVLDEATANVDPKT----------DLLIQRTIRKKFA-----DCTVLTIAHRLHT-----I 536 (597)
Q Consensus 477 GGQrQRIaIARAll~~p~ILILDEaTSaLD~~t----------e~~I~~~l~~~~~-----~~TvI~IaHrlst-----i 536 (597)
+++++|-.+++|...+|.+|++||+.+-++... ...+...++.... +..+|..|++... .
T Consensus 98 ~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vi~~tn~~~~l~~~l~ 177 (297)
T 3b9p_A 98 GEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQELDEAAL 177 (297)
T ss_dssp HHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC------CEEEEEEESCGGGBCHHHH
T ss_pred HHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccCCCCcEEEEeecCChhhCCHHHH
Confidence 577788888888888999999999988765322 2234444444321 2456778887543 2
Q ss_pred hhcCEEEEEe
Q psy1502 537 MDSDKVLVMD 546 (597)
Q Consensus 537 ~~~D~Iivl~ 546 (597)
+.+|+++.+.
T Consensus 178 ~R~~~~i~~~ 187 (297)
T 3b9p_A 178 RRFTKRVYVS 187 (297)
T ss_dssp HHCCEEEECC
T ss_pred hhCCeEEEeC
Confidence 4678776654
No 206
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.78 E-value=5.2e-06 Score=86.01 Aligned_cols=43 Identities=23% Similarity=0.244 Sum_probs=36.7
Q ss_pred CCccceeeeEEEcCCcE--EEEEcCCCCCHHHHHHHHhccc-cCCc
Q psy1502 353 GPRVIKNLNITIHPKEK--IGIVGRTGAGKSSLIAAIFRLA-EVEG 395 (597)
Q Consensus 353 ~~~vL~~isl~I~~G~~--vaIVG~SGsGKSTL~~LL~~l~-~~~G 395 (597)
.+.+++.++..++.|+. +.+.||+|+||||+++.+++.. +..|
T Consensus 30 ~~~~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~ 75 (340)
T 1sxj_C 30 QNEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIYGKNY 75 (340)
T ss_dssp CHHHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHHHTTSH
T ss_pred cHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHcCCCc
Confidence 34588899999999988 9999999999999999999854 4444
No 207
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=97.76 E-value=4.2e-06 Score=85.89 Aligned_cols=39 Identities=23% Similarity=0.307 Sum_probs=34.3
Q ss_pred CccceeeeEEEcCCc------EEEEEcCCCCCHHHHHHHHhcccc
Q psy1502 354 PRVIKNLNITIHPKE------KIGIVGRTGAGKSSLIAAIFRLAE 392 (597)
Q Consensus 354 ~~vL~~isl~I~~G~------~vaIVG~SGsGKSTL~~LL~~l~~ 392 (597)
.+.|++++..+.+++ .+||+||||||||||+++|.++..
T Consensus 73 ~~~l~~~~~~~l~~~~~~~p~iigI~GpsGSGKSTl~~~L~~ll~ 117 (321)
T 3tqc_A 73 RQTLQQATYQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKALLS 117 (321)
T ss_dssp HHHHHHHHHHHHTCCCCCCCEEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 457888888888877 899999999999999999999863
No 208
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=97.73 E-value=1.4e-05 Score=78.28 Aligned_cols=69 Identities=19% Similarity=0.229 Sum_probs=48.9
Q ss_pred CcEEEEEcCCCCCHHHHHHHHhc---cc-cCCceE--------EEcceeCCCCC-hHHHhcCcEEEe------CCCCCCC
Q psy1502 367 KEKIGIVGRTGAGKSSLIAAIFR---LA-EVEGVI--------KIDDIDTEDVP-LSKLRSNISIIP------QDPVLFS 427 (597)
Q Consensus 367 G~~vaIVG~SGsGKSTL~~LL~~---l~-~~~G~I--------~idg~di~~~~-~~~lr~~I~~V~------Q~~~LF~ 427 (597)
+-.++|+|||||||||+++.|.+ +. .+.|.+ .-.|.+..+.. ...+..++.++. |..+|+.
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~lg~~~~d~g~~~r~~~~~~~~~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~v~l~g 88 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARALGARYLDTGAMYRIATLAVLRAGADLTDPAAIEKAAADAEIGVGSDPDVDAAFLAG 88 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHHHHHHHTCCTTCHHHHHHHHHTCCEEECCCTTSCCEEETT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCcccCCcHHHHHHHHHHHcCCCchhhHHHHHHHHhCCEEEeecCCCcEEEECC
Confidence 45899999999999999999984 32 245666 34677766543 455667777776 5566666
Q ss_pred ccHHhhcc
Q psy1502 428 GTLRKNLD 435 (597)
Q Consensus 428 gTI~eNI~ 435 (597)
..|.+||+
T Consensus 89 ~~v~~~ir 96 (233)
T 3r20_A 89 EDVSSEIR 96 (233)
T ss_dssp EECTTGGG
T ss_pred eehhhhhc
Confidence 67766664
No 209
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=97.70 E-value=7.9e-06 Score=77.58 Aligned_cols=57 Identities=18% Similarity=0.206 Sum_probs=38.6
Q ss_pred EEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhcc----c-c----CCceEEEcceeC
Q psy1502 347 NVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRL----A-E----VEGVIKIDDIDT 404 (597)
Q Consensus 347 sf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l----~-~----~~G~I~idg~di 404 (597)
+|+|++-.++++++|+..+++ +|+++|++|+|||||++.+.+- | | ..+.+.++|.++
T Consensus 6 ~~~~~~~~~~l~~~~~~~~~~-ki~lvG~~~vGKSsLi~~l~~~~~~~~~~t~~~~~~~~~~~~~~l 71 (198)
T 1f6b_A 6 DWIYSGFSSVLQFLGLYKKTG-KLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELTIAGMTF 71 (198)
T ss_dssp -------CHHHHHHTCTTCCE-EEEEEEETTSSHHHHHHHHSCC------CCCCCSCEEEEETTEEE
T ss_pred HHHHHHHHHHHHHhhccCCCc-EEEEECCCCCCHHHHHHHHhcCCCCccCCCCCceeEEEEECCEEE
Confidence 567876667999999988777 6899999999999999999862 2 1 236666666443
No 210
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=97.69 E-value=7.3e-05 Score=76.59 Aligned_cols=108 Identities=11% Similarity=0.121 Sum_probs=66.6
Q ss_pred CccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccccCCceEEEcceeCCCCChHHHhcCcEEEeCCCCCCCccHHhh
Q psy1502 354 PRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAEVEGVIKIDDIDTEDVPLSKLRSNISIIPQDPVLFSGTLRKN 433 (597)
Q Consensus 354 ~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~~~~G~I~idg~di~~~~~~~lr~~I~~V~Q~~~LF~gTI~eN 433 (597)
-+.|+++.--+++|+.+.|.|++|+|||||+.-++.-....| ..+.|++=
T Consensus 55 ~~~LD~~lgGl~~G~l~li~G~pG~GKTtl~l~ia~~~a~~g------------------~~vl~~sl------------ 104 (315)
T 3bh0_A 55 FTELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKNMSDND------------------DVVNLHSL------------ 104 (315)
T ss_dssp CHHHHHHHSSBCTTCEEEEECCTTSSHHHHHHHHHHHHHTTT------------------CEEEEEES------------
T ss_pred hHHHHhhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcC------------------CeEEEEEC------------
Confidence 345666665689999999999999999999987764221111 12333331
Q ss_pred cccCCCCChHHHHHHHHHhcHHHHHHhcCCCchhhhCCCC-CCChhHHHHHHHHHHHccCCCEEEeecCCCC
Q psy1502 434 LDPFEKYPDYVLWTALQEVELKDMIMEGAGLNMTVYEGGT-NFSVGQRQLICLARAIVRNNVILVLDEATAN 504 (597)
Q Consensus 434 I~~~~~~~~e~i~~a~~~a~l~~fI~~l~GldT~vge~G~-~LSGGQrQRIaIARAll~~p~ILILDEaTSa 504 (597)
+.+.+++.+-+... ..|++..--..|. .||++++||++.|...+.++++++.|+|+..
T Consensus 105 -----E~s~~~l~~R~~~~--------~~~i~~~~l~~~~~~l~~~~~~~l~~a~~~l~~~~i~i~d~~~~~ 163 (315)
T 3bh0_A 105 -----EMGKKENIKRLIVT--------AGSINAQKIKAARRDFASEDWGKLSMAIGEISNSNINIFDKAGQS 163 (315)
T ss_dssp -----SSCHHHHHHHHHHH--------HTTCCHHHHHSCHHHHCSSCHHHHHHHHHHHHTSCEEEECCSCCB
T ss_pred -----CCCHHHHHHHHHHH--------HcCCCHHHHhcCCCCCCHHHHHHHHHHHHHHhCCCEEEECCCCCC
Confidence 23444443322111 0122211001111 2889999999999988888999999988644
No 211
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=97.62 E-value=3.7e-05 Score=80.02 Aligned_cols=27 Identities=26% Similarity=0.407 Sum_probs=24.3
Q ss_pred cCCcEEEEEcCCCCCHHHHHHHHhccc
Q psy1502 365 HPKEKIGIVGRTGAGKSSLIAAIFRLA 391 (597)
Q Consensus 365 ~~G~~vaIVG~SGsGKSTL~~LL~~l~ 391 (597)
+++..+.|.||+|+|||||++.+.+..
T Consensus 43 ~~~~~vli~G~~G~GKTtl~~~l~~~~ 69 (386)
T 2qby_A 43 EKPNNIFIYGLTGTGKTAVVKFVLSKL 69 (386)
T ss_dssp CCCCCEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 567899999999999999999999854
No 212
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=97.59 E-value=8.4e-05 Score=79.82 Aligned_cols=44 Identities=14% Similarity=0.161 Sum_probs=34.2
Q ss_pred cc-CCCEEEeecCCCCCCH-HHHHHHHHHHHHhc-CCcEEEEeccCc
Q psy1502 490 VR-NNVILVLDEATANVDP-KTDLLIQRTIRKKF-ADCTVLTIAHRL 533 (597)
Q Consensus 490 l~-~p~ILILDEaTSaLD~-~te~~I~~~l~~~~-~~~TvI~IaHrl 533 (597)
++ +|++|++||+..-.+. .+...+...++.+. .++++|+.||+.
T Consensus 191 ~~~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~ 237 (440)
T 2z4s_A 191 YRKKVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDRE 237 (440)
T ss_dssp HTTTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSC
T ss_pred hcCCCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCC
Confidence 34 8999999999887764 56677777777654 467889999984
No 213
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=97.59 E-value=1.1e-05 Score=93.20 Aligned_cols=30 Identities=27% Similarity=0.435 Sum_probs=27.9
Q ss_pred EEEcCCcEEEEEcCCCCCHHHHHHHHhccc
Q psy1502 362 ITIHPKEKIGIVGRTGAGKSSLIAAIFRLA 391 (597)
Q Consensus 362 l~I~~G~~vaIVG~SGsGKSTL~~LL~~l~ 391 (597)
|.+++|+.+.|+||+|||||||+++|++..
T Consensus 233 l~i~~~~~vLL~Gp~GtGKTtLarala~~l 262 (806)
T 1ypw_A 233 IGVKPPRGILLYGPPGTGKTLIARAVANET 262 (806)
T ss_dssp SCCCCCCEEEECSCTTSSHHHHHHHHHHTT
T ss_pred cCCCCCCeEEEECcCCCCHHHHHHHHHHHc
Confidence 468999999999999999999999999875
No 214
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=97.55 E-value=0.00034 Score=68.30 Aligned_cols=23 Identities=43% Similarity=0.593 Sum_probs=21.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhccc
Q psy1502 369 KIGIVGRTGAGKSSLIAAIFRLA 391 (597)
Q Consensus 369 ~vaIVG~SGsGKSTL~~LL~~l~ 391 (597)
+|+|||++|+|||||++.|+|-.
T Consensus 31 ~i~lvG~~g~GKStlin~l~g~~ 53 (239)
T 3lxx_A 31 RIVLVGKTGAGKSATGNSILGRK 53 (239)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHcCCC
Confidence 68999999999999999999854
No 215
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=97.54 E-value=8.7e-06 Score=77.84 Aligned_cols=68 Identities=16% Similarity=0.202 Sum_probs=41.8
Q ss_pred EEcCCcEEEEEcCCCCCHHHHHHHHhccccC--CceE----------EEcceeCCCCChHHHhcCcEEEeCCCCCCCccH
Q psy1502 363 TIHPKEKIGIVGRTGAGKSSLIAAIFRLAEV--EGVI----------KIDDIDTEDVPLSKLRSNISIIPQDPVLFSGTL 430 (597)
Q Consensus 363 ~I~~G~~vaIVG~SGsGKSTL~~LL~~l~~~--~G~I----------~idg~di~~~~~~~lr~~I~~V~Q~~~LF~gTI 430 (597)
...+|..++|+||||||||||++.|...++. .+.+ .+||.+..-++.+.+... +.|..+++.+..
T Consensus 8 ~~~~~~~i~l~G~sGsGKsTl~~~L~~~~~~~~~~~~~~ttR~~~~~e~~g~~~~~~~~~~~~~~---~~~~~~~~~~~~ 84 (204)
T 2qor_A 8 HMARIPPLVVCGPSGVGKGTLIKKVLSEFPSRFRFSISCTTRNKREKETNGVDYYFVDKDDFERK---LKEGQFLEFDKY 84 (204)
T ss_dssp -CCCCCCEEEECCTTSCHHHHHHHHHHHCTTTEEECCEEECSCCCTTCCBTTTEEECCHHHHHHH---HHTTCEEEEEEE
T ss_pred ccccCCEEEEECCCCCCHHHHHHHHHHhCccceeeeeeecCCCCCCCCCCCcceeeCCHHHHHHH---HHcCCCEEeHHh
Confidence 3568999999999999999999999875431 1111 235555555566555543 234444444433
Q ss_pred Hhh
Q psy1502 431 RKN 433 (597)
Q Consensus 431 ~eN 433 (597)
..|
T Consensus 85 ~~~ 87 (204)
T 2qor_A 85 ANN 87 (204)
T ss_dssp TTE
T ss_pred CCC
Confidence 333
No 216
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=97.51 E-value=4.1e-05 Score=70.62 Aligned_cols=33 Identities=30% Similarity=0.347 Sum_probs=27.1
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHhccccCCceEEEcc
Q psy1502 366 PKEKIGIVGRTGAGKSSLIAAIFRLAEVEGVIKIDD 401 (597)
Q Consensus 366 ~G~~vaIVG~SGsGKSTL~~LL~~l~~~~G~I~idg 401 (597)
.|+.++|+|++||||||++++|.+.+. .+.+|+
T Consensus 3 ~~~~i~l~G~~GsGKSTl~~~La~~l~---~~~id~ 35 (173)
T 1kag_A 3 EKRNIFLVGPMGAGKSTIGRQLAQQLN---MEFYDS 35 (173)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHTT---CEEEEH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhC---CCEEec
Confidence 478899999999999999999998652 345554
No 217
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=97.51 E-value=4e-05 Score=82.35 Aligned_cols=60 Identities=32% Similarity=0.391 Sum_probs=39.3
Q ss_pred cEEEEEcCCCCCHHHHHHHHhccc-------------cCCceEEEcceeCCCCChHHHhcCcEEEeCCCCCCC
Q psy1502 368 EKIGIVGRTGAGKSSLIAAIFRLA-------------EVEGVIKIDDIDTEDVPLSKLRSNISIIPQDPVLFS 427 (597)
Q Consensus 368 ~~vaIVG~SGsGKSTL~~LL~~l~-------------~~~G~I~idg~di~~~~~~~lr~~I~~V~Q~~~LF~ 427 (597)
-++||||++|+|||||++.|+|.. +.+|.+.++|.++.-++...+++..++.+|....|.
T Consensus 181 ~kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~~~~l~Dt~G~~~~~~~~~~~~e~~~ 253 (439)
T 1mky_A 181 IKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKYVFVDTAGLRRKSRVEPRTVEKYS 253 (439)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTEEEEESSCSCC-----------CCSC
T ss_pred ceEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCEEEEEEECCCCccccccchhhHHHHH
Confidence 479999999999999999999852 236899999998766666666666677777666664
No 218
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=97.48 E-value=1.7e-05 Score=87.49 Aligned_cols=78 Identities=18% Similarity=0.257 Sum_probs=46.3
Q ss_pred EEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc-cCCceEEEcceeCCCCChHHHhcCcEEEeC
Q psy1502 343 FQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EVEGVIKIDDIDTEDVPLSKLRSNISIIPQ 421 (597)
Q Consensus 343 f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I~idg~di~~~~~~~lr~~I~~V~Q 421 (597)
++++...|. ...+++++++++ +|+.++|+||+|+|||||++.|.+.. ++.|.|.++|.....-.....++.+|+++|
T Consensus 86 ~~~vk~~i~-~~~~l~~~~~~~-~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~i~~~~~~~~~~~~g~~~~~ig~~~~ 163 (543)
T 3m6a_A 86 LEKVKERIL-EYLAVQKLTKSL-KGPILCLAGPPGVGKTSLAKSIAKSLGRKFVRISLGGVRDESEIRGHRRTYVGAMPG 163 (543)
T ss_dssp CHHHHHHHH-HHHHHHHHSSSC-CSCEEEEESSSSSSHHHHHHHHHHHHTCEEEEECCCC--------------------
T ss_pred HHHHHHHHH-HHHHHHHhcccC-CCCEEEEECCCCCCHHHHHHHHHHhcCCCeEEEEecccchhhhhhhHHHHHhccCch
Confidence 455555552 234678888888 89999999999999999999999976 467888887754322112223455666665
Q ss_pred C
Q psy1502 422 D 422 (597)
Q Consensus 422 ~ 422 (597)
.
T Consensus 164 ~ 164 (543)
T 3m6a_A 164 R 164 (543)
T ss_dssp C
T ss_pred H
Confidence 4
No 219
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=97.45 E-value=2.6e-05 Score=80.86 Aligned_cols=52 Identities=19% Similarity=0.297 Sum_probs=44.6
Q ss_pred CccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc-cCCceEEEcceeCC
Q psy1502 354 PRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-EVEGVIKIDDIDTE 405 (597)
Q Consensus 354 ~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I~idg~di~ 405 (597)
..+++++++.+++|..++|+|++|+|||||++.|++.+ +..|.+.+-+.|..
T Consensus 43 ~~~~~~l~~~~~~~~~i~i~G~~g~GKSTl~~~l~~~~~~~~~~v~v~~~d~~ 95 (341)
T 2p67_A 43 TQLLDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVDPS 95 (341)
T ss_dssp HHHHHHHGGGCSCSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC
T ss_pred HHHHHhCCcccCCCEEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEeecCC
Confidence 35788999999999999999999999999999999976 46788877666654
No 220
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=97.42 E-value=0.00015 Score=74.34 Aligned_cols=26 Identities=35% Similarity=0.324 Sum_probs=23.1
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHhccc
Q psy1502 366 PKEKIGIVGRTGAGKSSLIAAIFRLA 391 (597)
Q Consensus 366 ~G~~vaIVG~SGsGKSTL~~LL~~l~ 391 (597)
++..+.|.||+|+|||||++.+.+..
T Consensus 36 ~~~~lll~G~~GtGKT~la~~i~~~~ 61 (324)
T 1l8q_A 36 LYNPIFIYGSVGTGKTHLLQAAGNEA 61 (324)
T ss_dssp SCSSEEEECSSSSSHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHH
Confidence 45789999999999999999999854
No 221
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=97.40 E-value=3.4e-05 Score=74.03 Aligned_cols=43 Identities=16% Similarity=0.174 Sum_probs=36.4
Q ss_pred EEEcCCcEEEEEcCCCCCHHHHHHHHhcccc-CCc--eEEEcceeC
Q psy1502 362 ITIHPKEKIGIVGRTGAGKSSLIAAIFRLAE-VEG--VIKIDDIDT 404 (597)
Q Consensus 362 l~I~~G~~vaIVG~SGsGKSTL~~LL~~l~~-~~G--~I~idg~di 404 (597)
+.+++|..++|+|++||||||+++.|.+.++ ..| .+.+||.++
T Consensus 20 ~~~~~~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~~d~~ 65 (211)
T 1m7g_A 20 LRNQRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDNI 65 (211)
T ss_dssp HHTSSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHHHH
T ss_pred ccCCCCCEEEEECCCCCCHHHHHHHHHHHhccccCCcEEEECChHH
Confidence 4467899999999999999999999998775 678 888886443
No 222
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=97.39 E-value=9.8e-05 Score=72.95 Aligned_cols=45 Identities=31% Similarity=0.346 Sum_probs=28.7
Q ss_pred cceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccccCCceEEEccee
Q psy1502 356 VIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAEVEGVIKIDDID 403 (597)
Q Consensus 356 vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~~~~G~I~idg~d 403 (597)
.++++++..++| +.|+||+|+|||||++.|.+.... --+.+++.+
T Consensus 36 ~~~~~~~~~~~~--vll~G~~GtGKT~la~~la~~~~~-~~~~i~~~~ 80 (257)
T 1lv7_A 36 RFQKLGGKIPKG--VLMVGPPGTGKTLLAKAIAGEAKV-PFFTISGSD 80 (257)
T ss_dssp GC-----CCCCE--EEEECCTTSCHHHHHHHHHHHHTC-CEEEECSCS
T ss_pred HHHHcCCCCCCe--EEEECcCCCCHHHHHHHHHHHcCC-CEEEEeHHH
Confidence 455566656555 999999999999999999986421 124555443
No 223
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=97.36 E-value=0.00039 Score=67.76 Aligned_cols=129 Identities=16% Similarity=0.208 Sum_probs=69.9
Q ss_pred EcCCcEEEEEcCCCCCHHHHHHHHhcc-ccCCceEEEcceeCCCCChHHHhcCcEEEeCCCCCCC-ccHHhhccc--CCC
Q psy1502 364 IHPKEKIGIVGRTGAGKSSLIAAIFRL-AEVEGVIKIDDIDTEDVPLSKLRSNISIIPQDPVLFS-GTLRKNLDP--FEK 439 (597)
Q Consensus 364 I~~G~~vaIVG~SGsGKSTL~~LL~~l-~~~~G~I~idg~di~~~~~~~lr~~I~~V~Q~~~LF~-gTI~eNI~~--~~~ 439 (597)
+.+|+.+.++|||||||||++.+++.- ....|. ...+.++.|.|.... .++.+|+.. +..
T Consensus 73 i~~g~~~~i~g~TGsGKTt~~~~~~~~~~~~~~~----------------~~~~~~l~~~p~~~la~q~~~~~~~~~~~~ 136 (235)
T 3llm_A 73 ISQNSVVIIRGATGCGKTTQVPQFILDDFIQNDR----------------AAECNIVVTQPRRISAVSVAERVAFERGEE 136 (235)
T ss_dssp HHHCSEEEEECCTTSSHHHHHHHHHHHHHHHTTC----------------GGGCEEEEEESSHHHHHHHHHHHHHTTTCC
T ss_pred HhcCCEEEEEeCCCCCcHHhHHHHHhcchhhcCC----------------CCceEEEEeccchHHHHHHHHHHHHHhccc
Confidence 356899999999999999988776532 111121 134566666665332 344555431 100
Q ss_pred CChHHHHHHHHHhcHHHHHHhcCCCchh----hhCCCCC---CChhHHHHHHHHHHHccCCCEEEeecCCC-CCCHHHHH
Q psy1502 440 YPDYVLWTALQEVELKDMIMEGAGLNMT----VYEGGTN---FSVGQRQLICLARAIVRNNVILVLDEATA-NVDPKTDL 511 (597)
Q Consensus 440 ~~~e~i~~a~~~a~l~~fI~~l~GldT~----vge~G~~---LSGGQrQRIaIARAll~~p~ILILDEaTS-aLD~~te~ 511 (597)
.. ...|+... ....+.+ -+.|.-.+. .+..+++-+++|+||+-. ++|.....
T Consensus 137 ~~------------------~~~g~~~~~~~~~~~~~~~Ivv~Tpg~l~~~--l~~~l~~~~~lVlDEah~~~~~~~~~~ 196 (235)
T 3llm_A 137 PG------------------KSCGYSVRFESILPRPHASIMFCTVGVLLRK--LEAGIRGISHVIVDEIHERDINTDFLL 196 (235)
T ss_dssp TT------------------SSEEEEETTEEECCCSSSEEEEEEHHHHHHH--HHHCCTTCCEEEECCTTSCCHHHHHHH
T ss_pred cC------------------ceEEEeechhhccCCCCCeEEEECHHHHHHH--HHhhhcCCcEEEEECCccCCcchHHHH
Confidence 00 00111111 1101111 134655454 344689999999999976 57777664
Q ss_pred HHHHHHHHhcCCcEEEE
Q psy1502 512 LIQRTIRKKFADCTVLT 528 (597)
Q Consensus 512 ~I~~~l~~~~~~~TvI~ 528 (597)
...+.+.+..++..+|+
T Consensus 197 ~~l~~i~~~~~~~~~il 213 (235)
T 3llm_A 197 VVLRDVVQAYPEVRIVL 213 (235)
T ss_dssp HHHHHHHHHCTTSEEEE
T ss_pred HHHHHHHhhCCCCeEEE
Confidence 45555555555543333
No 224
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=97.35 E-value=6.4e-05 Score=73.37 Aligned_cols=42 Identities=17% Similarity=0.263 Sum_probs=28.7
Q ss_pred ceeeeEEEc---CCcEEEEEcCCCCCHHHHHHHHhccccCCceEE
Q psy1502 357 IKNLNITIH---PKEKIGIVGRTGAGKSSLIAAIFRLAEVEGVIK 398 (597)
Q Consensus 357 L~~isl~I~---~G~~vaIVG~SGsGKSTL~~LL~~l~~~~G~I~ 398 (597)
|.++||.+. +|..++|.|++||||||+++.|...+...+.+.
T Consensus 13 ~~~~~~~~~~~~~g~~i~i~G~~GsGKsT~~~~l~~~l~~~~~~~ 57 (229)
T 4eaq_A 13 LGTENLYFQSNAMSAFITFEGPEGSGKTTVINEVYHRLVKDYDVI 57 (229)
T ss_dssp -------CCCCCCCEEEEEECCTTSCHHHHHHHHHHHHTTTSCEE
T ss_pred ccCCCeeEeecCCCeEEEEEcCCCCCHHHHHHHHHHHHhcCCCce
Confidence 444455544 899999999999999999999998664344443
No 225
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=97.35 E-value=0.00026 Score=71.69 Aligned_cols=30 Identities=23% Similarity=0.328 Sum_probs=24.6
Q ss_pred CcEEEEEcCCCCCHHHHHHHHhccc-cCCce
Q psy1502 367 KEKIGIVGRTGAGKSSLIAAIFRLA-EVEGV 396 (597)
Q Consensus 367 G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~ 396 (597)
...+.|+||+|+||||+++.|.+.. ...|.
T Consensus 47 ~~~~ll~G~~GtGKt~la~~la~~~~~~~~~ 77 (311)
T 4fcw_A 47 IGSFLFLGPTGVGKTELAKTLAATLFDTEEA 77 (311)
T ss_dssp SEEEEEESCSSSSHHHHHHHHHHHHHSCGGG
T ss_pred ceEEEEECCCCcCHHHHHHHHHHHHcCCCcc
Confidence 4579999999999999999999865 34443
No 226
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=97.32 E-value=9e-05 Score=77.08 Aligned_cols=42 Identities=24% Similarity=0.372 Sum_probs=34.6
Q ss_pred cCCcEEEEEcCCCCCHHHHHHHHhccc-cCCceEEEcceeCCC
Q psy1502 365 HPKEKIGIVGRTGAGKSSLIAAIFRLA-EVEGVIKIDDIDTED 406 (597)
Q Consensus 365 ~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~~G~I~idg~di~~ 406 (597)
+++..|+|+|++|||||||++.|.+.. +.+|.|.|.+.|...
T Consensus 72 ~~~~~v~lvG~pgaGKSTLln~L~~~~~~~~~~v~V~~~dp~~ 114 (349)
T 2www_A 72 PLAFRVGLSGPPGAGKSTFIEYFGKMLTERGHKLSVLAVDPSS 114 (349)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC--
T ss_pred cCceEEEEEcCCCCCHHHHHHHHHHHhhhcCCeEEEEeecCCC
Confidence 457899999999999999999999976 567888888776653
No 227
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.29 E-value=7.8e-05 Score=76.94 Aligned_cols=43 Identities=16% Similarity=0.227 Sum_probs=34.3
Q ss_pred CCCEEEeecCCCCCCHHHHHHHHHHHHHhcCCcEEEEeccCchh
Q psy1502 492 NNVILVLDEATANVDPKTDLLIQRTIRKKFADCTVLTIAHRLHT 535 (597)
Q Consensus 492 ~p~ILILDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrlst 535 (597)
++.|+++|| ...++++....+.+.+++...+..+|+++++...
T Consensus 133 ~~~vliiDE-~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~ 175 (353)
T 1sxj_D 133 PYKIIILDE-ADSMTADAQSALRRTMETYSGVTRFCLICNYVTR 175 (353)
T ss_dssp SCEEEEETT-GGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGG
T ss_pred CceEEEEEC-CCccCHHHHHHHHHHHHhcCCCceEEEEeCchhh
Confidence 667999999 6778888888898888887666667778877654
No 228
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=97.29 E-value=0.00014 Score=68.31 Aligned_cols=33 Identities=24% Similarity=0.360 Sum_probs=20.7
Q ss_pred cceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhc
Q psy1502 356 VIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFR 389 (597)
Q Consensus 356 vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~ 389 (597)
+++++|+..++. +|+++|++|+|||||++.+.+
T Consensus 13 ~l~~~~~~~~~~-ki~~vG~~~vGKSsli~~l~~ 45 (190)
T 1m2o_B 13 VLASLGLWNKHG-KLLFLGLDNAGKTTLLHMLKN 45 (190)
T ss_dssp -----------C-EEEEEESTTSSHHHHHHHHHH
T ss_pred HHHHhhccCCcc-EEEEECCCCCCHHHHHHHHhc
Confidence 788999988776 889999999999999999986
No 229
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=97.28 E-value=0.00061 Score=68.12 Aligned_cols=27 Identities=33% Similarity=0.470 Sum_probs=24.0
Q ss_pred EcCCcEEEEEcCCCCCHHHHHHHHhcc
Q psy1502 364 IHPKEKIGIVGRTGAGKSSLIAAIFRL 390 (597)
Q Consensus 364 I~~G~~vaIVG~SGsGKSTL~~LL~~l 390 (597)
++++..+.|.||+|+|||||++.+.+-
T Consensus 48 ~~~~~~~ll~G~~GtGKT~la~~la~~ 74 (285)
T 3h4m_A 48 IEPPKGILLYGPPGTGKTLLAKAVATE 74 (285)
T ss_dssp CCCCSEEEEESSSSSSHHHHHHHHHHH
T ss_pred CCCCCeEEEECCCCCcHHHHHHHHHHH
Confidence 467788999999999999999999874
No 230
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=97.28 E-value=0.00017 Score=66.55 Aligned_cols=26 Identities=42% Similarity=0.479 Sum_probs=22.8
Q ss_pred cCCcEEEEEcCCCCCHHHHHHHHhcc
Q psy1502 365 HPKEKIGIVGRTGAGKSSLIAAIFRL 390 (597)
Q Consensus 365 ~~G~~vaIVG~SGsGKSTL~~LL~~l 390 (597)
++|.+++|||++|+|||||++.|.+.
T Consensus 2 ~~~~ki~ivG~~g~GKStLl~~l~~~ 27 (172)
T 2gj8_A 2 SHGMKVVIAGRPNAGKSSLLNALAGR 27 (172)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHTS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 47889999999999999999999975
No 231
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=97.24 E-value=0.00022 Score=67.61 Aligned_cols=24 Identities=33% Similarity=0.412 Sum_probs=21.9
Q ss_pred cEEEEEcCCCCCHHHHHHHHhccc
Q psy1502 368 EKIGIVGRTGAGKSSLIAAIFRLA 391 (597)
Q Consensus 368 ~~vaIVG~SGsGKSTL~~LL~~l~ 391 (597)
..+.|.||+|+|||||++.+....
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~ 78 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANEL 78 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHH
Confidence 789999999999999999998754
No 232
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=97.24 E-value=0.00019 Score=69.36 Aligned_cols=26 Identities=27% Similarity=0.285 Sum_probs=23.7
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHhccc
Q psy1502 366 PKEKIGIVGRTGAGKSSLIAAIFRLA 391 (597)
Q Consensus 366 ~G~~vaIVG~SGsGKSTL~~LL~~l~ 391 (597)
++..+.|+||+|+|||||++.+.+..
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l~~~~ 76 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAACARA 76 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 68899999999999999999998754
No 233
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=97.22 E-value=0.00013 Score=68.40 Aligned_cols=32 Identities=25% Similarity=0.229 Sum_probs=26.4
Q ss_pred eeeEEEcCCcEEEEEcCCCCCHHHHHHHHhcc
Q psy1502 359 NLNITIHPKEKIGIVGRTGAGKSSLIAAIFRL 390 (597)
Q Consensus 359 ~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l 390 (597)
++|++.++|..++|+|++||||||+.+.|...
T Consensus 2 ~~~~~~~~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 2 PGSMEQPKGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp ----CCCSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CcCcCCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 57889999999999999999999999999864
No 234
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=97.20 E-value=0.00075 Score=68.42 Aligned_cols=30 Identities=27% Similarity=0.396 Sum_probs=26.7
Q ss_pred EEEcCCcEEEEEcCCCCCHHHHHHHHhccc
Q psy1502 362 ITIHPKEKIGIVGRTGAGKSSLIAAIFRLA 391 (597)
Q Consensus 362 l~I~~G~~vaIVG~SGsGKSTL~~LL~~l~ 391 (597)
+.++++..+.|.||+|+|||||++.|.+..
T Consensus 44 ~~~~~~~~vLL~Gp~GtGKT~la~ala~~~ 73 (301)
T 3cf0_A 44 FGMTPSKGVLFYGPPGCGKTLLAKAIANEC 73 (301)
T ss_dssp HCCCCCSEEEEECSSSSSHHHHHHHHHHHT
T ss_pred cCCCCCceEEEECCCCcCHHHHHHHHHHHh
Confidence 457889999999999999999999998754
No 235
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=97.18 E-value=0.0013 Score=68.50 Aligned_cols=49 Identities=18% Similarity=0.257 Sum_probs=33.7
Q ss_pred CCCccceeeeEE---EcCCcEEEEEcCCCCCHHHHHHHHhccc-cC-CceEEEcc
Q psy1502 352 SGPRVIKNLNIT---IHPKEKIGIVGRTGAGKSSLIAAIFRLA-EV-EGVIKIDD 401 (597)
Q Consensus 352 ~~~~vL~~isl~---I~~G~~vaIVG~SGsGKSTL~~LL~~l~-~~-~G~I~idg 401 (597)
.+-+-|+.+ |. +++|+.+.|.|++|+|||||+.-++.-. .. ...++||.
T Consensus 46 TG~~~LD~~-Lg~GGl~~G~ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid~ 99 (356)
T 1u94_A 46 TGSLSLDIA-LGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDA 99 (356)
T ss_dssp CSCHHHHHH-TSSSSEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred CCCHHHHHH-hccCCccCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeC
Confidence 333445554 33 8899999999999999999998777533 22 23444554
No 236
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=97.15 E-value=0.00044 Score=74.50 Aligned_cols=58 Identities=9% Similarity=0.066 Sum_probs=39.0
Q ss_pred hhHHHHHHHHHHHccCCCEEEeec-CCCCCCHHHHHHHHHHHHHhcCCcEEEEeccCchhHh
Q psy1502 477 VGQRQLICLARAIVRNNVILVLDE-ATANVDPKTDLLIQRTIRKKFADCTVLTIAHRLHTIM 537 (597)
Q Consensus 477 GGQrQRIaIARAll~~p~ILILDE-aTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrlsti~ 537 (597)
+.|.+-...++..+++++++|+.. ++..+.... ..+.+.+++ .++.+|+|.+......
T Consensus 87 ~~~~~~~~~~~~~~~~ad~il~VvD~~~~~~~~d-~~l~~~l~~--~~~pvilV~NK~D~~~ 145 (456)
T 4dcu_A 87 PFLAQIRQQAEIAMDEADVIIFMVNGREGVTAAD-EEVAKILYR--TKKPVVLAVNKLDNTE 145 (456)
T ss_dssp CCHHHHHHHHHHHHHHCSEEEEEEESSSCSCHHH-HHHHHHHTT--CCSCEEEEEECC----
T ss_pred HHHHHHHHHHHhhHhhCCEEEEEEeCCCCCChHH-HHHHHHHHH--cCCCEEEEEECccchh
Confidence 458888889999999999887654 444455544 456566654 4788999998887653
No 237
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=97.11 E-value=0.0034 Score=66.89 Aligned_cols=34 Identities=24% Similarity=0.420 Sum_probs=26.9
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHhccccCCc-eEEE
Q psy1502 366 PKEKIGIVGRTGAGKSSLIAAIFRLAEVEG-VIKI 399 (597)
Q Consensus 366 ~G~~vaIVG~SGsGKSTL~~LL~~l~~~~G-~I~i 399 (597)
++..++++|++|+||||++.-|+..+...| ++.+
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVll 133 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGV 133 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEE
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEE
Confidence 467999999999999999999998664333 4443
No 238
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=97.09 E-value=0.00027 Score=64.03 Aligned_cols=32 Identities=34% Similarity=0.477 Sum_probs=25.0
Q ss_pred eeeEEEcCCcEEEEEcCCCCCHHHHHHHHh-ccc
Q psy1502 359 NLNITIHPKEKIGIVGRTGAGKSSLIAAIF-RLA 391 (597)
Q Consensus 359 ~isl~I~~G~~vaIVG~SGsGKSTL~~LL~-~l~ 391 (597)
+..+++++| ..+|+||+|||||||++.|. .++
T Consensus 16 ~~~i~f~~g-~~~I~G~NGsGKStil~Ai~~~l~ 48 (149)
T 1f2t_A 16 DTVVEFKEG-INLIIGQNGSGKSSLLDAILVGLY 48 (149)
T ss_dssp SEEEECCSE-EEEEECCTTSSHHHHHHHHHHHHH
T ss_pred ceEEEcCCC-eEEEECCCCCCHHHHHHHHHHHHc
Confidence 344555554 89999999999999999997 354
No 239
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=97.07 E-value=0.00074 Score=64.69 Aligned_cols=45 Identities=9% Similarity=0.114 Sum_probs=34.9
Q ss_pred cCCCEEEeecCCCCCCHHHHHHHHHHHHHhcCCcEEEEeccCchhH
Q psy1502 491 RNNVILVLDEATANVDPKTDLLIQRTIRKKFADCTVLTIAHRLHTI 536 (597)
Q Consensus 491 ~~p~ILILDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrlsti 536 (597)
.+|.++++||+-. +|.+....+.+.+.+...+..+|++|++...+
T Consensus 125 ~~~~vlviDe~~~-l~~~~~~~l~~~l~~~~~~~~~i~~t~~~~~~ 169 (250)
T 1njg_A 125 GRFKVYLIDEVHM-LSRHSFNALLKTLEEPPEHVKFLLATTDPQKL 169 (250)
T ss_dssp SSSEEEEEETGGG-SCHHHHHHHHHHHHSCCTTEEEEEEESCGGGS
T ss_pred CCceEEEEECccc-ccHHHHHHHHHHHhcCCCceEEEEEeCChHhC
Confidence 4678999999876 78888888888887655567788888886644
No 240
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=97.06 E-value=0.0002 Score=67.99 Aligned_cols=35 Identities=31% Similarity=0.327 Sum_probs=28.0
Q ss_pred CcEEEEEcCCCCCHHHHHHHHhccccCCceEEEcceeC
Q psy1502 367 KEKIGIVGRTGAGKSSLIAAIFRLAEVEGVIKIDDIDT 404 (597)
Q Consensus 367 G~~vaIVG~SGsGKSTL~~LL~~l~~~~G~I~idg~di 404 (597)
...|+|+|++||||||+++.|.+.+ |...+|+-++
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~l---g~~~i~~d~~ 52 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEAC---GYPFIEGDAL 52 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHH---TCCEEEGGGG
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh---CCEEEeCCcC
Confidence 5689999999999999999998754 5556665443
No 241
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=97.05 E-value=0.0019 Score=57.87 Aligned_cols=40 Identities=10% Similarity=0.168 Sum_probs=29.0
Q ss_pred CCCEEEeecCCCCCCHHHHHHHHHHHHHhcCCcEEEEeccC
Q psy1502 492 NNVILVLDEATANVDPKTDLLIQRTIRKKFADCTVLTIAHR 532 (597)
Q Consensus 492 ~p~ILILDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHr 532 (597)
+..+|++||.- .|+++....+.+.|.....+..+|..|++
T Consensus 76 ~~g~l~ldei~-~l~~~~q~~Ll~~l~~~~~~~~~I~~t~~ 115 (145)
T 3n70_A 76 QGGTLVLSHPE-HLTREQQYHLVQLQSQEHRPFRLIGIGDT 115 (145)
T ss_dssp TTSCEEEECGG-GSCHHHHHHHHHHHHSSSCSSCEEEEESS
T ss_pred CCcEEEEcChH-HCCHHHHHHHHHHHhhcCCCEEEEEECCc
Confidence 44689999985 67888888888888555445566777765
No 242
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=96.98 E-value=0.00018 Score=72.97 Aligned_cols=61 Identities=11% Similarity=0.061 Sum_probs=46.4
Q ss_pred EEEeeEEEeCCCCcccee-eeEEEcCCcEEEEEcCCCCCHHHHHHHHhcccc-CCceEEEcceeCCC
Q psy1502 342 EFQNTNVRYLSGPRVIKN-LNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAE-VEGVIKIDDIDTED 406 (597)
Q Consensus 342 ~f~nVsf~Y~~~~~vL~~-isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~~-~~G~I~idg~di~~ 406 (597)
..+++...|+... ++ ++++.+ |+.++++|++|+||||++..|++.+. ..|++.+.+.|...
T Consensus 76 ~~~~l~~~~~~~~---~~~i~~~~~-~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~~r 138 (297)
T 1j8m_F 76 VYDELSNLFGGDK---EPKVIPDKI-PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADVYR 138 (297)
T ss_dssp HHHHHHHHTTCSC---CCCCSCSSS-SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECCCSS
T ss_pred HHHHHHHHhcccc---ccccccCCC-CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCC
Confidence 3455555553321 45 777776 99999999999999999999999774 57899988887654
No 243
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=96.98 E-value=0.00023 Score=72.89 Aligned_cols=27 Identities=15% Similarity=0.292 Sum_probs=24.5
Q ss_pred EEcCCcEEEEEcCCCCCHHHHHHHHhc
Q psy1502 363 TIHPKEKIGIVGRTGAGKSSLIAAIFR 389 (597)
Q Consensus 363 ~I~~G~~vaIVG~SGsGKSTL~~LL~~ 389 (597)
-+++|+.+.|.|++|||||||+.-++.
T Consensus 94 Gl~~g~i~~i~G~~gsGKT~la~~la~ 120 (322)
T 2i1q_A 94 GLESQSVTEFAGVFGSGKTQIMHQSCV 120 (322)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHH
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHH
Confidence 479999999999999999999987764
No 244
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=96.98 E-value=0.00018 Score=71.06 Aligned_cols=42 Identities=19% Similarity=0.225 Sum_probs=34.1
Q ss_pred EEcCCcEEEEEcCCCCCHHHHHHHHhccccCCceEEEcceeCC
Q psy1502 363 TIHPKEKIGIVGRTGAGKSSLIAAIFRLAEVEGVIKIDDIDTE 405 (597)
Q Consensus 363 ~I~~G~~vaIVG~SGsGKSTL~~LL~~l~~~~G~I~idg~di~ 405 (597)
..+++..+.|+|++||||||+++.|.+.++ .|.+.+||-.++
T Consensus 28 ~~~~~~~i~l~G~~GsGKSTla~~L~~~l~-~~~~~~~~D~~r 69 (253)
T 2p5t_B 28 SSKQPIAILLGGQSGAGKTTIHRIKQKEFQ-GNIVIIDGDSFR 69 (253)
T ss_dssp CCSSCEEEEEESCGGGTTHHHHHHHHHHTT-TCCEEECGGGGG
T ss_pred cccCCeEEEEECCCCCCHHHHHHHHHHhcC-CCcEEEecHHHH
Confidence 466788999999999999999999998653 356778876554
No 245
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=96.86 E-value=0.00043 Score=64.70 Aligned_cols=39 Identities=18% Similarity=0.273 Sum_probs=31.1
Q ss_pred EEcCCcEEEEEcCCCCCHHHHHHHHhcccc-CCceE-EEcc
Q psy1502 363 TIHPKEKIGIVGRTGAGKSSLIAAIFRLAE-VEGVI-KIDD 401 (597)
Q Consensus 363 ~I~~G~~vaIVG~SGsGKSTL~~LL~~l~~-~~G~I-~idg 401 (597)
..++|..+.|+|++||||||+++.|.+... ..|.+ .+|+
T Consensus 9 ~~~~~~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~~~~~~ 49 (186)
T 2yvu_A 9 CIEKGIVVWLTGLPGSGKTTIATRLADLLQKEGYRVEVLDG 49 (186)
T ss_dssp CCSCCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEH
T ss_pred ccCCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEeeH
Confidence 346799999999999999999999998664 45555 4554
No 246
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=96.85 E-value=0.0001 Score=76.98 Aligned_cols=47 Identities=32% Similarity=0.474 Sum_probs=35.5
Q ss_pred cccEEEEeeEEEeCCCCccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc
Q psy1502 338 LGKIEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA 391 (597)
Q Consensus 338 ~~~I~f~nVsf~Y~~~~~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~ 391 (597)
.+.|.|+|++..|. ++.++++++|+| +|||++|+|||||++.|.+..
T Consensus 15 ~~~v~~~~l~~~~~-~k~~~~~~~~~I------~vvG~~g~GKSTLln~L~~~~ 61 (361)
T 2qag_A 15 PGYVGFANLPNQVH-RKSVKKGFEFTL------MVVGESGLGKSTLINSLFLTD 61 (361)
T ss_dssp ------CCHHHHHH-THHHHHCCEECE------EECCCTTSCHHHHHHHHTTCC
T ss_pred CceEEeccchHHhC-CeeecCCCCEEE------EEEcCCCCCHHHHHHHHhCCC
Confidence 45689999998885 356889999976 999999999999999998753
No 247
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=96.83 E-value=0.0017 Score=63.81 Aligned_cols=58 Identities=12% Similarity=0.105 Sum_probs=35.4
Q ss_pred hhHHHHHHHHHHHc---cCCCEEEeecCCCCCCHHHHHHHHHHHHHhcC----CcEEEEeccCchh
Q psy1502 477 VGQRQLICLARAIV---RNNVILVLDEATANVDPKTDLLIQRTIRKKFA----DCTVLTIAHRLHT 535 (597)
Q Consensus 477 GGQrQRIaIARAll---~~p~ILILDEaTSaLD~~te~~I~~~l~~~~~----~~TvI~IaHrlst 535 (597)
.|++.+-.+.|+++ ++|+++|+--..+.++.. +..+.+.+.+.+. ++++|+++|....
T Consensus 87 ~~~~~~~~i~~~~~~~~~~~d~il~V~d~~~~~~~-~~~~~~~l~~~~~~~~~~~~iilv~nK~Dl 151 (247)
T 3lxw_A 87 KTDPGCEERGHCYLLSAPGPHALLLVTQLGRFTAQ-DQQAVRQVRDMFGEDVLKWMVIVFTRKEDL 151 (247)
T ss_dssp HHSTTSHHHHHHHHHHTTCCSEEEEEEETTBCCHH-HHHHHHHHHHHHCGGGGGGEEEEEECGGGG
T ss_pred cHHHHHHHHHHHHHhcCCCCCEEEEEEeCCCCCHH-HHHHHHHHHHHhChhhhccEEEEEEchHhc
Confidence 34555566777774 888877754433455544 4444455555432 5799999997553
No 248
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=96.83 E-value=0.0062 Score=61.34 Aligned_cols=56 Identities=11% Similarity=0.019 Sum_probs=36.7
Q ss_pred CCCEEEeecCCCC--------CCHHHHHHHHHHHHHhcCCcEEEEeccC----------chhHhhcCEEEEEeC
Q psy1502 492 NNVILVLDEATAN--------VDPKTDLLIQRTIRKKFADCTVLTIAHR----------LHTIMDSDKVLVMDS 547 (597)
Q Consensus 492 ~p~ILILDEaTSa--------LD~~te~~I~~~l~~~~~~~TvI~IaHr----------lsti~~~D~Iivl~~ 547 (597)
++.+|++||+-.- .+.+....+.+.+.+...+..+|+++++ .....++|.++.+..
T Consensus 130 ~~~vl~iDEid~l~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~R~~~~i~~~~ 203 (309)
T 3syl_A 130 MGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENNRDDLVVILAGYADRMENFFQSNPGFRSRIAHHIEFPD 203 (309)
T ss_dssp TTSEEEEETGGGSCCCC---CCTHHHHHHHHHHHHHCTTTCEEEEEECHHHHHHHHHHSTTHHHHEEEEEEECC
T ss_pred CCCEEEEEChhhhccCCCcccccHHHHHHHHHHHhcCCCCEEEEEeCChHHHHHHHhhCHHHHHhCCeEEEcCC
Confidence 5679999998643 3666666777777765555677777754 233346777776643
No 249
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=96.80 E-value=0.00055 Score=63.73 Aligned_cols=37 Identities=22% Similarity=0.338 Sum_probs=29.2
Q ss_pred CcEEEEEcCCCCCHHHHHHHHhcccc-C---CceEEEccee
Q psy1502 367 KEKIGIVGRTGAGKSSLIAAIFRLAE-V---EGVIKIDDID 403 (597)
Q Consensus 367 G~~vaIVG~SGsGKSTL~~LL~~l~~-~---~G~I~idg~d 403 (597)
-..++|+|+||||||||++.|.+... . -|.|..++.+
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~l~~~g~~v~~i~~~~~~ 46 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPALCARGIRPGLIKHTHHD 46 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC-
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHhccccCCceeEEeeCCCc
Confidence 46799999999999999999998542 2 3778877655
No 250
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=96.79 E-value=0.005 Score=58.00 Aligned_cols=44 Identities=18% Similarity=0.284 Sum_probs=31.8
Q ss_pred cCCCEEEeecCCCCCCHHHHHHHHHHHHHhcCCcEEEEeccCchh
Q psy1502 491 RNNVILVLDEATANVDPKTDLLIQRTIRKKFADCTVLTIAHRLHT 535 (597)
Q Consensus 491 ~~p~ILILDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrlst 535 (597)
.++.++++||+- .++.+....+.+.+.+...+..+|+++++...
T Consensus 101 ~~~~vliiDe~~-~l~~~~~~~l~~~l~~~~~~~~~i~~~~~~~~ 144 (226)
T 2chg_A 101 APFKIIFLDEAD-ALTADAQAALRRTMEMYSKSCRFILSCNYVSR 144 (226)
T ss_dssp CSCEEEEEETGG-GSCHHHHHHHHHHHHHTTTTEEEEEEESCGGG
T ss_pred cCceEEEEeChh-hcCHHHHHHHHHHHHhcCCCCeEEEEeCChhh
Confidence 368899999974 46777777787888776556667777776543
No 251
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=96.78 E-value=0.0093 Score=60.97 Aligned_cols=28 Identities=36% Similarity=0.379 Sum_probs=24.0
Q ss_pred EcCCcEEEEEcCCCCCHHHHHHHHhccc
Q psy1502 364 IHPKEKIGIVGRTGAGKSSLIAAIFRLA 391 (597)
Q Consensus 364 I~~G~~vaIVG~SGsGKSTL~~LL~~l~ 391 (597)
.++..-+.|.||+|+|||||++.+.+..
T Consensus 42 ~~~~~~iLL~GppGtGKT~la~ala~~~ 69 (322)
T 1xwi_A 42 RTPWRGILLFGPPGTGKSYLAKAVATEA 69 (322)
T ss_dssp CCCCSEEEEESSSSSCHHHHHHHHHHHT
T ss_pred CCCCceEEEECCCCccHHHHHHHHHHHc
Confidence 3566789999999999999999998743
No 252
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=96.76 E-value=0.0061 Score=65.28 Aligned_cols=37 Identities=24% Similarity=0.249 Sum_probs=30.5
Q ss_pred ccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc
Q psy1502 355 RVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA 391 (597)
Q Consensus 355 ~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~ 391 (597)
+-|+.+.--+++|+.+.|.|++|+|||||+.-++.-.
T Consensus 188 ~~LD~~lgGl~~G~l~ii~G~pg~GKT~lal~ia~~~ 224 (444)
T 2q6t_A 188 KELDQLIGTLGPGSLNIIAARPAMGKTAFALTIAQNA 224 (444)
T ss_dssp HHHHHHHCCCCTTCEEEEEECTTSCHHHHHHHHHHHH
T ss_pred HhhhhhcCCcCCCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence 3466655458999999999999999999998887643
No 253
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=96.72 E-value=0.00057 Score=71.63 Aligned_cols=56 Identities=16% Similarity=0.153 Sum_probs=43.9
Q ss_pred HHHHHHHHccCCCEEEeecCCCCCCHHHHHHHHHHHHHhcCCcEEEEeccCchhHhhcCEEE
Q psy1502 482 LICLARAIVRNNVILVLDEATANVDPKTDLLIQRTIRKKFADCTVLTIAHRLHTIMDSDKVL 543 (597)
Q Consensus 482 RIaIARAll~~p~ILILDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrlsti~~~D~Ii 543 (597)
+.+|+++|..+|+++++|||| |+++-. .+++....+.+++.++|..+....|||++
T Consensus 199 ~~~l~~~L~~~pd~illdE~~---d~e~~~---~~l~~~~~g~~vi~t~H~~~~~~~~~rl~ 254 (372)
T 2ewv_A 199 ADALRAALREDPDVIFVGEMR---DLETVE---TALRAAETGHLVFGTLHTNTAIDTIHRIV 254 (372)
T ss_dssp HHHHHHHTTSCCSEEEESCCC---SHHHHH---HHHHHHTTTCEEEECCCCCSHHHHHHHHH
T ss_pred HHHHHHHhhhCcCEEEECCCC---CHHHHH---HHHHHHhcCCEEEEEECcchHHHHHHHHH
Confidence 569999999999999999999 777633 34444445789999999887666677764
No 254
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=96.70 E-value=0.00067 Score=64.22 Aligned_cols=22 Identities=36% Similarity=0.687 Sum_probs=20.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhcc
Q psy1502 369 KIGIVGRTGAGKSSLIAAIFRL 390 (597)
Q Consensus 369 ~vaIVG~SGsGKSTL~~LL~~l 390 (597)
.|+|+|++||||||+++.|.++
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~~ 24 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFREL 24 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHHT
T ss_pred EEEEECCCCcCHHHHHHHHHHC
Confidence 6999999999999999999983
No 255
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=96.70 E-value=0.0025 Score=66.06 Aligned_cols=38 Identities=16% Similarity=0.216 Sum_probs=28.1
Q ss_pred cCCcEEEEEcCCCCCHHHHHHHHhcccc-CCceEEEcce
Q psy1502 365 HPKEKIGIVGRTGAGKSSLIAAIFRLAE-VEGVIKIDDI 402 (597)
Q Consensus 365 ~~G~~vaIVG~SGsGKSTL~~LL~~l~~-~~G~I~idg~ 402 (597)
.+|..+.|.||+|+||||+++.+.+... ...-+.+++.
T Consensus 68 ~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~~~~~~~ 106 (368)
T 3uk6_A 68 IAGRAVLIAGQPGTGKTAIAMGMAQALGPDTPFTAIAGS 106 (368)
T ss_dssp CTTCEEEEEESTTSSHHHHHHHHHHHHCSSCCEEEEEGG
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHhcccCCcccccch
Confidence 4567899999999999999999997543 2234444443
No 256
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=96.67 E-value=0.0081 Score=58.79 Aligned_cols=26 Identities=23% Similarity=0.294 Sum_probs=22.4
Q ss_pred cCCcEEEEEcCCCCCHHHHHHHHhcc
Q psy1502 365 HPKEKIGIVGRTGAGKSSLIAAIFRL 390 (597)
Q Consensus 365 ~~G~~vaIVG~SGsGKSTL~~LL~~l 390 (597)
++..-+.|.||+|+||||+++.+.+-
T Consensus 37 ~~~~~vll~G~~GtGKT~la~~la~~ 62 (262)
T 2qz4_A 37 KVPKGALLLGPPGCGKTLLAKAVATE 62 (262)
T ss_dssp CCCCEEEEESCTTSSHHHHHHHHHHH
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHH
Confidence 44566899999999999999999874
No 257
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=96.62 E-value=0.001 Score=61.36 Aligned_cols=26 Identities=23% Similarity=0.360 Sum_probs=22.7
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHhccc
Q psy1502 366 PKEKIGIVGRTGAGKSSLIAAIFRLA 391 (597)
Q Consensus 366 ~G~~vaIVG~SGsGKSTL~~LL~~l~ 391 (597)
.|..|.|+|+|||||||+.+.|..-.
T Consensus 2 ~~~~i~l~G~~GsGKST~a~~La~~l 27 (178)
T 1qhx_A 2 TTRMIILNGGSSAGKSGIVRCLQSVL 27 (178)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHS
T ss_pred CceEEEEECCCCCCHHHHHHHHHHhc
Confidence 36789999999999999999998743
No 258
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=96.62 E-value=0.011 Score=61.61 Aligned_cols=27 Identities=30% Similarity=0.332 Sum_probs=24.1
Q ss_pred EEcCCcEEEEEcCCCCCHHHHHHHHhc
Q psy1502 363 TIHPKEKIGIVGRTGAGKSSLIAAIFR 389 (597)
Q Consensus 363 ~I~~G~~vaIVG~SGsGKSTL~~LL~~ 389 (597)
-+++|+.+.|.||+|+|||||+.-++.
T Consensus 70 Gl~~G~li~I~G~pGsGKTtlal~la~ 96 (366)
T 1xp8_A 70 GIPRGRITEIYGPESGGKTTLALAIVA 96 (366)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHH
T ss_pred CccCCcEEEEEcCCCCChHHHHHHHHH
Confidence 379999999999999999999977764
No 259
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=96.61 E-value=0.0008 Score=62.55 Aligned_cols=25 Identities=20% Similarity=0.359 Sum_probs=22.4
Q ss_pred cCCcEEEEEcCCCCCHHHHHHHHhc
Q psy1502 365 HPKEKIGIVGRTGAGKSSLIAAIFR 389 (597)
Q Consensus 365 ~~G~~vaIVG~SGsGKSTL~~LL~~ 389 (597)
.+|..++|+|++||||||+.+.|..
T Consensus 2 ~~g~~I~l~G~~GsGKST~~~~La~ 26 (186)
T 3cm0_A 2 DVGQAVIFLGPPGAGKGTQASRLAQ 26 (186)
T ss_dssp -CEEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4688999999999999999999985
No 260
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=96.61 E-value=0.00087 Score=69.99 Aligned_cols=59 Identities=27% Similarity=0.411 Sum_probs=40.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhccccCCceEEEcceeCCCCChHHHhcCcEEEeCCCCCCCccHHhhcccCCCCChHHHHHH
Q psy1502 369 KIGIVGRTGAGKSSLIAAIFRLAEVEGVIKIDDIDTEDVPLSKLRSNISIIPQDPVLFSGTLRKNLDPFEKYPDYVLWTA 448 (597)
Q Consensus 369 ~vaIVG~SGsGKSTL~~LL~~l~~~~G~I~idg~di~~~~~~~lr~~I~~V~Q~~~LF~gTI~eNI~~~~~~~~e~i~~a 448 (597)
+++|||++|+|||||++.|++..+ ++.+++.. |+..|+... .++++++..+
T Consensus 3 ~v~IVG~pnvGKSTL~n~L~~~~~----------~v~~~p~~------------------Ti~pn~g~~-~v~~~~l~~~ 53 (368)
T 2dby_A 3 AVGIVGLPNVGKSTLFNALTRANA----------LAANYPFA------------------TIDKNVGVV-PLEDERLYAL 53 (368)
T ss_dssp SEEEECCSSSSHHHHHHHHHHHHT----------TCSSCCGG------------------GGSTTEEEE-ECCCHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC----------cccCCCCc------------------eeccceeeE-ecChHHHHHH
Confidence 589999999999999999998642 12222221 666666543 4567788888
Q ss_pred HHHhcHHH
Q psy1502 449 LQEVELKD 456 (597)
Q Consensus 449 ~~~a~l~~ 456 (597)
++.++..+
T Consensus 54 ~~~~~~~~ 61 (368)
T 2dby_A 54 QRTFAKGE 61 (368)
T ss_dssp HHHHCBTT
T ss_pred HHHhcccc
Confidence 87776544
No 261
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=96.60 E-value=0.0031 Score=64.27 Aligned_cols=28 Identities=18% Similarity=0.223 Sum_probs=25.0
Q ss_pred EEEcCCcEEEEEcCCCCCHHHHHHHHhc
Q psy1502 362 ITIHPKEKIGIVGRTGAGKSSLIAAIFR 389 (597)
Q Consensus 362 l~I~~G~~vaIVG~SGsGKSTL~~LL~~ 389 (597)
--+++|..+.|.||+|+|||||+.-++.
T Consensus 118 GGi~~gsviLI~GpPGsGKTtLAlqlA~ 145 (331)
T 2vhj_A 118 GHRYASGMVIVTGKGNSGKTPLVHALGE 145 (331)
T ss_dssp TEEEESEEEEEECSCSSSHHHHHHHHHH
T ss_pred CCCCCCcEEEEEcCCCCCHHHHHHHHHH
Confidence 4688999999999999999999988864
No 262
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=96.57 E-value=0.0046 Score=59.83 Aligned_cols=51 Identities=12% Similarity=0.180 Sum_probs=34.5
Q ss_pred CCCEEEeecCCCCCCHHHHHHHHHHHHHhcCCcEEEEeccC-----------chhHhhcCEEEEEe
Q psy1502 492 NNVILVLDEATANVDPKTDLLIQRTIRKKFADCTVLTIAHR-----------LHTIMDSDKVLVMD 546 (597)
Q Consensus 492 ~p~ILILDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHr-----------lsti~~~D~Iivl~ 546 (597)
+++++++||+-- |+.+.-. ....|.+. +.++|++-|+ ...+..||.|..|.
T Consensus 89 ~~dvViIDEaQ~-l~~~~ve-~l~~L~~~--gi~Vil~Gl~~df~~~~F~~~~~Ll~lAD~V~el~ 150 (223)
T 2b8t_A 89 ETKVIGIDEVQF-FDDRICE-VANILAEN--GFVVIISGLDKNFKGEPFGPIAKLFTYADKITKLT 150 (223)
T ss_dssp TCCEEEECSGGG-SCTHHHH-HHHHHHHT--TCEEEEECCSBCTTSSBCTTHHHHHHHCSEEEECC
T ss_pred CCCEEEEecCcc-CcHHHHH-HHHHHHhC--CCeEEEEeccccccCCcCCCcHHHHHHhheEeecc
Confidence 689999999964 6654222 33444443 7899999993 33345799998863
No 263
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=96.56 E-value=0.0013 Score=60.85 Aligned_cols=23 Identities=26% Similarity=0.473 Sum_probs=20.9
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcc
Q psy1502 368 EKIGIVGRTGAGKSSLIAAIFRL 390 (597)
Q Consensus 368 ~~vaIVG~SGsGKSTL~~LL~~l 390 (597)
-+++++|++|+|||||++.|.+-
T Consensus 8 ~~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 8 YEIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 37999999999999999999873
No 264
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=96.54 E-value=0.0011 Score=60.63 Aligned_cols=22 Identities=23% Similarity=0.110 Sum_probs=20.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhcc
Q psy1502 369 KIGIVGRTGAGKSSLIAAIFRL 390 (597)
Q Consensus 369 ~vaIVG~SGsGKSTL~~LL~~l 390 (597)
.|+|+|++||||||+++.|...
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~ 24 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKE 24 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999864
No 265
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=96.52 E-value=0.0089 Score=62.00 Aligned_cols=26 Identities=27% Similarity=0.369 Sum_probs=23.1
Q ss_pred cCCcEEEEEcCCCCCHHHHHHHHhcc
Q psy1502 365 HPKEKIGIVGRTGAGKSSLIAAIFRL 390 (597)
Q Consensus 365 ~~G~~vaIVG~SGsGKSTL~~LL~~l 390 (597)
++...+.|.||+|+|||||++.+...
T Consensus 115 ~~~~~vLl~GppGtGKT~la~aia~~ 140 (357)
T 3d8b_A 115 GPPKGILLFGPPGTGKTLIGKCIASQ 140 (357)
T ss_dssp SCCSEEEEESSTTSSHHHHHHHHHHH
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHH
Confidence 46778999999999999999999864
No 266
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=96.50 E-value=0.0013 Score=59.99 Aligned_cols=24 Identities=25% Similarity=0.450 Sum_probs=21.5
Q ss_pred cEEEEEcCCCCCHHHHHHHHhccc
Q psy1502 368 EKIGIVGRTGAGKSSLIAAIFRLA 391 (597)
Q Consensus 368 ~~vaIVG~SGsGKSTL~~LL~~l~ 391 (597)
-+++|+|++|+|||||++.+.+..
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~~~ 27 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTGEN 27 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCCS
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC
Confidence 379999999999999999999853
No 267
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=96.50 E-value=0.0004 Score=71.75 Aligned_cols=36 Identities=25% Similarity=0.491 Sum_probs=32.9
Q ss_pred ccceeeeEEEcCCcE--EEEEcCCCCCHHHHHHHHhcc
Q psy1502 355 RVIKNLNITIHPKEK--IGIVGRTGAGKSSLIAAIFRL 390 (597)
Q Consensus 355 ~vL~~isl~I~~G~~--vaIVG~SGsGKSTL~~LL~~l 390 (597)
.+++++++.+++|+. ++|+|++||||||+.++|++.
T Consensus 10 ~il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~ 47 (359)
T 2ga8_A 10 DVLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQI 47 (359)
T ss_dssp HHHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHH
Confidence 478889999999999 999999999999999999874
No 268
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=96.48 E-value=0.0004 Score=66.19 Aligned_cols=26 Identities=31% Similarity=0.410 Sum_probs=22.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhccccCC
Q psy1502 369 KIGIVGRTGAGKSSLIAAIFRLAEVE 394 (597)
Q Consensus 369 ~vaIVG~SGsGKSTL~~LL~~l~~~~ 394 (597)
.|+|+|++||||||+++.|.+.+...
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~~~ 27 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFRAA 27 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHHEE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHhc
Confidence 68999999999999999999876533
No 269
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=96.47 E-value=0.0014 Score=62.37 Aligned_cols=29 Identities=34% Similarity=0.520 Sum_probs=23.4
Q ss_pred eeeEEEcCCcEEEEEcCCCCCHHHHHHHHh
Q psy1502 359 NLNITIHPKEKIGIVGRTGAGKSSLIAAIF 388 (597)
Q Consensus 359 ~isl~I~~G~~vaIVG~SGsGKSTL~~LL~ 388 (597)
+.++++.+ ...+|+||+||||||++..|.
T Consensus 16 ~~~i~f~~-~~~~I~G~NgsGKStil~ai~ 44 (203)
T 3qks_A 16 DTVVEFKE-GINLIIGQNGSGKSSLLDAIL 44 (203)
T ss_dssp SEEEECCS-EEEEEECCTTSSHHHHHHHHH
T ss_pred ceEEEeCC-CeEEEEcCCCCCHHHHHHHHH
Confidence 34455554 489999999999999999986
No 270
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=96.47 E-value=0.0013 Score=61.06 Aligned_cols=25 Identities=32% Similarity=0.472 Sum_probs=21.8
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHhcc
Q psy1502 366 PKEKIGIVGRTGAGKSSLIAAIFRL 390 (597)
Q Consensus 366 ~G~~vaIVG~SGsGKSTL~~LL~~l 390 (597)
++..|.|+|++||||||+.+.|..-
T Consensus 4 ~~~~i~l~G~~GsGKst~a~~La~~ 28 (185)
T 3trf_A 4 NLTNIYLIGLMGAGKTSVGSQLAKL 28 (185)
T ss_dssp -CCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHH
Confidence 4678999999999999999999753
No 271
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=96.45 E-value=0.0014 Score=60.89 Aligned_cols=23 Identities=39% Similarity=0.748 Sum_probs=20.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhccc
Q psy1502 369 KIGIVGRTGAGKSSLIAAIFRLA 391 (597)
Q Consensus 369 ~vaIVG~SGsGKSTL~~LL~~l~ 391 (597)
+++|+|++|+|||||++.+.+..
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~~ 26 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKTK 26 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC-
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 68999999999999999999863
No 272
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=96.44 E-value=0.0012 Score=68.59 Aligned_cols=27 Identities=22% Similarity=0.357 Sum_probs=23.8
Q ss_pred cCCcEEEEEcCCCCCHHHHHHHHhccc
Q psy1502 365 HPKEKIGIVGRTGAGKSSLIAAIFRLA 391 (597)
Q Consensus 365 ~~G~~vaIVG~SGsGKSTL~~LL~~l~ 391 (597)
..+..+.|.||+|+|||||++.+.+-.
T Consensus 42 ~~~~~vll~G~~G~GKT~l~~~~~~~~ 68 (387)
T 2v1u_A 42 EKPSNALLYGLTGTGKTAVARLVLRRL 68 (387)
T ss_dssp CCCCCEEECBCTTSSHHHHHHHHHHHH
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHHH
Confidence 567789999999999999999998754
No 273
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=96.43 E-value=0.0015 Score=60.74 Aligned_cols=30 Identities=17% Similarity=0.264 Sum_probs=24.4
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHhccccCCc
Q psy1502 366 PKEKIGIVGRTGAGKSSLIAAIFRLAEVEG 395 (597)
Q Consensus 366 ~G~~vaIVG~SGsGKSTL~~LL~~l~~~~G 395 (597)
+|..+.|+|++||||||+++.|...+...|
T Consensus 2 ~~~~I~i~G~~GsGKsT~~~~L~~~l~~~g 31 (192)
T 1kht_A 2 KNKVVVVTGVPGVGSTTSSQLAMDNLRKEG 31 (192)
T ss_dssp -CCEEEEECCTTSCHHHHHHHHHHHHHTTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhcC
Confidence 367899999999999999999987544334
No 274
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=96.41 E-value=0.0059 Score=65.37 Aligned_cols=34 Identities=12% Similarity=0.206 Sum_probs=27.6
Q ss_pred cceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhc
Q psy1502 356 VIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFR 389 (597)
Q Consensus 356 vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~ 389 (597)
-|+.+.--+++|+.+.|.|++|+|||||+.-++.
T Consensus 186 ~LD~~lgGl~~G~liiIaG~pG~GKTtlal~ia~ 219 (444)
T 3bgw_A 186 ELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAK 219 (444)
T ss_dssp HHHHHHSSBCSSCEEEEEECSSSSHHHHHHHHHH
T ss_pred HHHhhcCCCCCCcEEEEEeCCCCChHHHHHHHHH
Confidence 4554443589999999999999999999877765
No 275
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=96.37 E-value=0.0018 Score=61.04 Aligned_cols=27 Identities=19% Similarity=0.152 Sum_probs=24.2
Q ss_pred cCCcEEEEEcCCCCCHHHHHHHHhccc
Q psy1502 365 HPKEKIGIVGRTGAGKSSLIAAIFRLA 391 (597)
Q Consensus 365 ~~G~~vaIVG~SGsGKSTL~~LL~~l~ 391 (597)
.+|..|+|+|++||||||+++.|...+
T Consensus 2 ~~~~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 2 SRGALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 368899999999999999999998755
No 276
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=96.36 E-value=0.0016 Score=59.30 Aligned_cols=19 Identities=37% Similarity=0.513 Sum_probs=18.3
Q ss_pred EEEEEcCCCCCHHHHHHHH
Q psy1502 369 KIGIVGRTGAGKSSLIAAI 387 (597)
Q Consensus 369 ~vaIVG~SGsGKSTL~~LL 387 (597)
.|+|+|++||||||+++.|
T Consensus 3 ~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 6899999999999999999
No 277
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=96.36 E-value=0.0019 Score=65.72 Aligned_cols=34 Identities=18% Similarity=0.316 Sum_probs=29.8
Q ss_pred ccceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhc
Q psy1502 355 RVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFR 389 (597)
Q Consensus 355 ~vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~ 389 (597)
..+++..+.+ .|.-++|+|+||+||||++..|.+
T Consensus 133 ~~~H~~~v~~-~g~~vl~~G~sG~GKSt~a~~l~~ 166 (314)
T 1ko7_A 133 TSLHGVLVDV-YGVGVLITGDSGIGKSETALELIK 166 (314)
T ss_dssp EEEESEEEEE-TTEEEEEEESTTSSHHHHHHHHHH
T ss_pred eeeeEEEEEE-CCEEEEEEeCCCCCHHHHHHHHHh
Confidence 3677877777 789999999999999999998885
No 278
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=96.35 E-value=0.0019 Score=67.91 Aligned_cols=58 Identities=22% Similarity=0.377 Sum_probs=43.8
Q ss_pred cCCCEEEeecCCCCCC---HHHHHHHHHHHHHhcC-CcEEEEeccCchhH-------------hhcCEEEEEeCC
Q psy1502 491 RNNVILVLDEATANVD---PKTDLLIQRTIRKKFA-DCTVLTIAHRLHTI-------------MDSDKVLVMDSG 548 (597)
Q Consensus 491 ~~p~ILILDEaTSaLD---~~te~~I~~~l~~~~~-~~TvI~IaHrlsti-------------~~~D~Iivl~~G 548 (597)
..|.++++||+=.-++ +.....+.+.+++.++ +..++++||+++.+ .+|+..+++...
T Consensus 261 ~~~~~i~iDEa~~~~~~~~~~~~~~l~~~~~~~Rk~g~~~~~~tQ~~~d~~~~~~~~~~~~il~n~~~~i~l~~~ 335 (392)
T 4ag6_A 261 RERTVLVVDEAWMLVDPQTPQAIAFLRDTSKRIRKYNGSLIVISQNVIDFLAPEVQRYGQALLDNPTYKLLLAQG 335 (392)
T ss_dssp CTTCEEEETTGGGGCCTTCTHHHHHHHHHHHHGGGGTCEEEEEESCGGGGGSTTTHHHHHHHHHSCSEEEECSCC
T ss_pred CccEEEEEecHHHHhCcCchHHHHHHHHHHHHhhhhCeEEEEEcCCHHHhhChhhHHHHHHHHHhhhhhheeCCC
Confidence 3578999999998885 5566777777776655 77899999999765 356777777654
No 279
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=96.34 E-value=0.0017 Score=60.64 Aligned_cols=26 Identities=23% Similarity=0.293 Sum_probs=23.3
Q ss_pred cCCcEEEEEcCCCCCHHHHHHHHhcc
Q psy1502 365 HPKEKIGIVGRTGAGKSSLIAAIFRL 390 (597)
Q Consensus 365 ~~G~~vaIVG~SGsGKSTL~~LL~~l 390 (597)
+++..|.|+|++||||||+++.|...
T Consensus 3 ~~~~~I~l~G~~GsGKST~~~~L~~~ 28 (193)
T 2rhm_A 3 QTPALIIVTGHPATGKTTLSQALATG 28 (193)
T ss_dssp SCCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 46789999999999999999999863
No 280
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=96.34 E-value=0.013 Score=62.67 Aligned_cols=27 Identities=37% Similarity=0.422 Sum_probs=23.7
Q ss_pred cCCcEEEEEcCCCCCHHHHHHHHhccc
Q psy1502 365 HPKEKIGIVGRTGAGKSSLIAAIFRLA 391 (597)
Q Consensus 365 ~~G~~vaIVG~SGsGKSTL~~LL~~l~ 391 (597)
.+..-+.|.||+|+|||||++.+.+..
T Consensus 165 ~~~~~vLL~GppGtGKT~lA~aia~~~ 191 (444)
T 2zan_A 165 TPWRGILLFGPPGTGKSYLAKAVATEA 191 (444)
T ss_dssp CCCSEEEEECSTTSSHHHHHHHHHHHC
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHc
Confidence 466789999999999999999998743
No 281
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=96.33 E-value=0.0018 Score=62.99 Aligned_cols=26 Identities=27% Similarity=0.335 Sum_probs=23.5
Q ss_pred EcCCcEEEEEcCCCCCHHHHHHHHhc
Q psy1502 364 IHPKEKIGIVGRTGAGKSSLIAAIFR 389 (597)
Q Consensus 364 I~~G~~vaIVG~SGsGKSTL~~LL~~ 389 (597)
-++|..++|+|++||||||+.+.|.+
T Consensus 13 ~~~~~~i~i~G~~gsGKst~~~~l~~ 38 (236)
T 1q3t_A 13 KMKTIQIAIDGPASSGKSTVAKIIAK 38 (236)
T ss_dssp -CCCCEEEEECSSCSSHHHHHHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHH
Confidence 46789999999999999999999986
No 282
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=96.30 E-value=0.0017 Score=68.24 Aligned_cols=40 Identities=28% Similarity=0.364 Sum_probs=31.2
Q ss_pred EEcCCcEEEEEcCCCCCHHHHHHHHhcc-----------c-cCCceEEEcce
Q psy1502 363 TIHPKEKIGIVGRTGAGKSSLIAAIFRL-----------A-EVEGVIKIDDI 402 (597)
Q Consensus 363 ~I~~G~~vaIVG~SGsGKSTL~~LL~~l-----------~-~~~G~I~idg~ 402 (597)
.+..|.+++|||++|+|||||++.|.+. . |..|.+.++|.
T Consensus 18 ~i~~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~~ 69 (396)
T 2ohf_A 18 RFGTSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPDE 69 (396)
T ss_dssp CSSSCCCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEECCCH
T ss_pred hccCCCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEECCc
Confidence 4567899999999999999999999986 1 23577776653
No 283
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=96.30 E-value=0.0022 Score=64.64 Aligned_cols=36 Identities=36% Similarity=0.532 Sum_probs=28.2
Q ss_pred cCCcEEEEEcCCCCCHHHHHHHHhccccCCceEEEcc
Q psy1502 365 HPKEKIGIVGRTGAGKSSLIAAIFRLAEVEGVIKIDD 401 (597)
Q Consensus 365 ~~G~~vaIVG~SGsGKSTL~~LL~~l~~~~G~I~idg 401 (597)
.+|..+.|+|||||||||+++.|..-++ .|.+.|++
T Consensus 31 ~~~~livl~G~sGsGKSTla~~L~~~~~-~~~~~Is~ 66 (287)
T 1gvn_B 31 ESPTAFLLGGQPGSGKTSLRSAIFEETQ-GNVIVIDN 66 (287)
T ss_dssp SSCEEEEEECCTTSCTHHHHHHHHHHTT-TCCEEECT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhC-CCeEEEec
Confidence 3467899999999999999999986433 36667765
No 284
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=96.30 E-value=0.0018 Score=61.32 Aligned_cols=30 Identities=27% Similarity=0.272 Sum_probs=25.4
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHhccccCCc
Q psy1502 366 PKEKIGIVGRTGAGKSSLIAAIFRLAEVEG 395 (597)
Q Consensus 366 ~G~~vaIVG~SGsGKSTL~~LL~~l~~~~G 395 (597)
+|..|+|.|++||||||+++.|..-+...|
T Consensus 3 ~~~~I~i~G~~GsGKsT~~~~L~~~l~~~g 32 (213)
T 2plr_A 3 KGVLIAFEGIDGSGKSSQATLLKDWIELKR 32 (213)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHTTTS
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHhhcC
Confidence 467899999999999999999987654444
No 285
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=96.27 E-value=0.0017 Score=61.12 Aligned_cols=59 Identities=25% Similarity=0.371 Sum_probs=40.4
Q ss_pred EEEEcCCCCCHHHHHHHHhccc-------------c-CCceEEEcceeCCCCChHHHhcCcEEEeCCCCCCCccHHhh
Q psy1502 370 IGIVGRTGAGKSSLIAAIFRLA-------------E-VEGVIKIDDIDTEDVPLSKLRSNISIIPQDPVLFSGTLRKN 433 (597)
Q Consensus 370 vaIVG~SGsGKSTL~~LL~~l~-------------~-~~G~I~idg~di~~~~~~~lr~~I~~V~Q~~~LF~gTI~eN 433 (597)
|.|+||||||||||++-|+.-+ + -.|++ ||+|..-++.+...+.+ .++-+|-.+.+..|
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~~~~~~~~~svs~TTR~pR~gE~--~G~dY~Fvs~~eF~~~i---~~g~flE~~~~~g~ 76 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFAEYPDSFGFSVSSTTRTPRAGEV--NGKDYNFVSVDEFKSMI---KNNEFIEWAQFSGN 76 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHHCTTTEEECCCEECSCCCTTCC--BTTTBEECCHHHHHHHH---HTTCEEEEEEETTE
T ss_pred EEEECCCCCCHHHHHHHHHHhCCCCeEEEEEEeccCCCCCCc--CCceeEeecHHHHHHHH---HcCCEEEEEEEcCc
Confidence 7899999999999999886321 1 14664 88888878877776653 34555555554444
No 286
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=96.26 E-value=0.0018 Score=60.82 Aligned_cols=22 Identities=50% Similarity=0.696 Sum_probs=20.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhcc
Q psy1502 369 KIGIVGRTGAGKSSLIAAIFRL 390 (597)
Q Consensus 369 ~vaIVG~SGsGKSTL~~LL~~l 390 (597)
.|+|+|++||||||+++.|.+.
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~ 23 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKK 23 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHHh
Confidence 6899999999999999999873
No 287
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=96.24 E-value=0.0021 Score=61.60 Aligned_cols=32 Identities=31% Similarity=0.494 Sum_probs=25.7
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHhccccCCceEEEcc
Q psy1502 366 PKEKIGIVGRTGAGKSSLIAAIFRLAEVEGVIKIDD 401 (597)
Q Consensus 366 ~G~~vaIVG~SGsGKSTL~~LL~~l~~~~G~I~idg 401 (597)
++-.|+|+|++||||||+++.|.++ |...+|.
T Consensus 3 ~~~~I~i~G~~GSGKST~~~~L~~l----g~~~id~ 34 (218)
T 1vht_A 3 LRYIVALTGGIGSGKSTVANAFADL----GINVIDA 34 (218)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHT----TCEEEEH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHc----CCEEEEc
Confidence 3568999999999999999999873 5455553
No 288
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=96.24 E-value=0.0023 Score=59.84 Aligned_cols=26 Identities=27% Similarity=0.382 Sum_probs=23.4
Q ss_pred cCCcEEEEEcCCCCCHHHHHHHHhcc
Q psy1502 365 HPKEKIGIVGRTGAGKSSLIAAIFRL 390 (597)
Q Consensus 365 ~~G~~vaIVG~SGsGKSTL~~LL~~l 390 (597)
+++..|+|+|++||||||+.+.|...
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~La~~ 32 (196)
T 2c95_A 7 KKTNIIFVVGGPGSGKGTQCEKIVQK 32 (196)
T ss_dssp TTSCEEEEEECTTSSHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHHH
Confidence 46789999999999999999999864
No 289
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=96.21 E-value=0.0024 Score=60.49 Aligned_cols=27 Identities=19% Similarity=0.147 Sum_probs=24.1
Q ss_pred cCCcEEEEEcCCCCCHHHHHHHHhccc
Q psy1502 365 HPKEKIGIVGRTGAGKSSLIAAIFRLA 391 (597)
Q Consensus 365 ~~G~~vaIVG~SGsGKSTL~~LL~~l~ 391 (597)
++|..|+|.|++||||||+++.|...+
T Consensus 8 ~~~~~I~l~G~~GsGKST~~~~L~~~l 34 (212)
T 2wwf_A 8 KKGKFIVFEGLDRSGKSTQSKLLVEYL 34 (212)
T ss_dssp BCSCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred hcCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 468899999999999999999998743
No 290
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=96.21 E-value=0.00016 Score=75.64 Aligned_cols=73 Identities=11% Similarity=-0.012 Sum_probs=52.7
Q ss_pred CCChhHHHHHHHHHHHc-cCCCEEEeec---CC------CCCCHHHHHHHHHHHHHhcC--CcEEEEeccCchhHhhcCE
Q psy1502 474 NFSVGQRQLICLARAIV-RNNVILVLDE---AT------ANVDPKTDLLIQRTIRKKFA--DCTVLTIAHRLHTIMDSDK 541 (597)
Q Consensus 474 ~LSGGQrQRIaIARAll-~~p~ILILDE---aT------SaLD~~te~~I~~~l~~~~~--~~TvI~IaHrlsti~~~D~ 541 (597)
.+|+|++||..+++++. .+|++++||| |+ +++|+.....+.+.|.++.+ +.|+|+++|--..-+-||+
T Consensus 258 ~~~~~~~~~~~i~~~~~~~~~~lllLdE~~~p~~~~g~~~sld~~~r~~l~~~l~~l~~~~~~~ililde~~~~~r~~~~ 337 (365)
T 1lw7_A 258 CIQYEGKAHPFLDSMIKEYPFDVTILLKNNTEWVDDGLRSLGSQKQRQQFQQLLKKLLDKYKVPYIEIESPSYLDRYNQV 337 (365)
T ss_dssp HHHHHSCCCHHHHHHHHHSCCSEEEEEECCCC-----------CCSHHHHHHHHHHHHHGGGCCCEEEECSSHHHHHHHH
T ss_pred HHHHcCCCCHHHHHHHhhcCCCEEEECCCCCCcccCCCcCCccHHHHHHHHHHHHHHHHHcCCCEEEeCCCCHHHHHHHH
Confidence 45677788999999885 5999999999 54 68999999999999977655 7899999986433344666
Q ss_pred EEEEe
Q psy1502 542 VLVMD 546 (597)
Q Consensus 542 Iivl~ 546 (597)
+.+++
T Consensus 338 i~~i~ 342 (365)
T 1lw7_A 338 KAVIE 342 (365)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55543
No 291
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=96.20 E-value=0.0023 Score=59.25 Aligned_cols=25 Identities=24% Similarity=0.300 Sum_probs=22.6
Q ss_pred cCCcEEEEEcCCCCCHHHHHHHHhc
Q psy1502 365 HPKEKIGIVGRTGAGKSSLIAAIFR 389 (597)
Q Consensus 365 ~~G~~vaIVG~SGsGKSTL~~LL~~ 389 (597)
.++..|.|+|++||||||+++.|..
T Consensus 9 ~~~~~i~i~G~~GsGKst~~~~l~~ 33 (180)
T 3iij_A 9 MLLPNILLTGTPGVGKTTLGKELAS 33 (180)
T ss_dssp CCCCCEEEECSTTSSHHHHHHHHHH
T ss_pred ccCCeEEEEeCCCCCHHHHHHHHHH
Confidence 4678899999999999999999985
No 292
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=96.18 E-value=0.0077 Score=60.69 Aligned_cols=26 Identities=35% Similarity=0.440 Sum_probs=21.8
Q ss_pred cCCcEEEEEcCCCCCHHHHHHHHhcc
Q psy1502 365 HPKEKIGIVGRTGAGKSSLIAAIFRL 390 (597)
Q Consensus 365 ~~G~~vaIVG~SGsGKSTL~~LL~~l 390 (597)
++...+.+.||+|+|||+|++.|++-
T Consensus 34 ~~p~~lLl~GppGtGKT~la~aiA~~ 59 (293)
T 3t15_A 34 KVPLILGIWGGKGQGKSFQCELVFRK 59 (293)
T ss_dssp CCCSEEEEEECTTSCHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 34456888999999999999999874
No 293
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=96.15 E-value=0.0027 Score=60.22 Aligned_cols=28 Identities=21% Similarity=0.160 Sum_probs=24.4
Q ss_pred EcCCcEEEEEcCCCCCHHHHHHHHhccc
Q psy1502 364 IHPKEKIGIVGRTGAGKSSLIAAIFRLA 391 (597)
Q Consensus 364 I~~G~~vaIVG~SGsGKSTL~~LL~~l~ 391 (597)
.++|..|+|+|++||||||+++.|...+
T Consensus 6 ~~~~~~I~l~G~~GsGKsT~~~~L~~~l 33 (215)
T 1nn5_A 6 ARRGALIVLEGVDRAGKSTQSRKLVEAL 33 (215)
T ss_dssp -CCCCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 3578899999999999999999998654
No 294
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=96.04 E-value=0.0023 Score=59.92 Aligned_cols=28 Identities=21% Similarity=0.311 Sum_probs=24.2
Q ss_pred EcCCcEEEEEcCCCCCHHHHHHHHhccc
Q psy1502 364 IHPKEKIGIVGRTGAGKSSLIAAIFRLA 391 (597)
Q Consensus 364 I~~G~~vaIVG~SGsGKSTL~~LL~~l~ 391 (597)
.+++..|+|+|++||||||+.+.|...+
T Consensus 9 ~~~~~~I~l~G~~GsGKsT~a~~L~~~l 36 (199)
T 2bwj_A 9 LRKCKIIFIIGGPGSGKGTQCEKLVEKY 36 (199)
T ss_dssp HHHSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 4567899999999999999999998643
No 295
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=96.02 E-value=0.0026 Score=58.62 Aligned_cols=22 Identities=36% Similarity=0.513 Sum_probs=20.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhcc
Q psy1502 369 KIGIVGRTGAGKSSLIAAIFRL 390 (597)
Q Consensus 369 ~vaIVG~SGsGKSTL~~LL~~l 390 (597)
.++|+|++||||||+.+.|...
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~ 27 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKD 27 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 6999999999999999999864
No 296
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=96.00 E-value=0.0023 Score=59.15 Aligned_cols=35 Identities=26% Similarity=0.325 Sum_probs=25.9
Q ss_pred cEEEEEcCCCCCHHHHHHHHhccccCC----ceEEEcce
Q psy1502 368 EKIGIVGRTGAGKSSLIAAIFRLAEVE----GVIKIDDI 402 (597)
Q Consensus 368 ~~vaIVG~SGsGKSTL~~LL~~l~~~~----G~I~idg~ 402 (597)
..++|+|+||||||||+..|.+..... |.|..|..
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~~l~~~g~~v~~ik~~~~ 43 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVAAAVREGWRVGTVKHHGH 43 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC-
T ss_pred EEEEEECCCCCCHHHHHHHHHHhhHhcCCeeeEEEeCCC
Confidence 479999999999999999998754322 55554443
No 297
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=95.99 E-value=0.0028 Score=62.54 Aligned_cols=22 Identities=27% Similarity=0.225 Sum_probs=20.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhcc
Q psy1502 369 KIGIVGRTGAGKSSLIAAIFRL 390 (597)
Q Consensus 369 ~vaIVG~SGsGKSTL~~LL~~l 390 (597)
.++|+||||||||||.+.|++-
T Consensus 3 li~I~G~~GSGKSTla~~La~~ 24 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQE 24 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHhc
Confidence 6899999999999999999864
No 298
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=95.99 E-value=0.035 Score=58.79 Aligned_cols=26 Identities=35% Similarity=0.379 Sum_probs=23.2
Q ss_pred EcCCcEEEEEcCCCCCHHHHHHHHhc
Q psy1502 364 IHPKEKIGIVGRTGAGKSSLIAAIFR 389 (597)
Q Consensus 364 I~~G~~vaIVG~SGsGKSTL~~LL~~ 389 (597)
=++...+.++|++||||||+++.|..
T Consensus 255 ~~~~~lIil~G~pGSGKSTla~~L~~ 280 (416)
T 3zvl_A 255 SPNPEVVVAVGFPGAGKSTFIQEHLV 280 (416)
T ss_dssp CSSCCEEEEESCTTSSHHHHHHHHTG
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHH
Confidence 45678999999999999999999875
No 299
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=95.98 E-value=0.0031 Score=57.91 Aligned_cols=31 Identities=26% Similarity=0.371 Sum_probs=23.8
Q ss_pred cEEEEEcCCCCCHHHHHHHHhccccCCceEEEc
Q psy1502 368 EKIGIVGRTGAGKSSLIAAIFRLAEVEGVIKID 400 (597)
Q Consensus 368 ~~vaIVG~SGsGKSTL~~LL~~l~~~~G~I~id 400 (597)
..|.|+|++||||||+++.|... ..|...++
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~~--~~~~~~i~ 33 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIAK--NPGFYNIN 33 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH--STTEEEEC
T ss_pred eEEEEecCCCCCHHHHHHHHHhh--cCCcEEec
Confidence 46899999999999999999862 12444454
No 300
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=95.98 E-value=0.0021 Score=62.17 Aligned_cols=43 Identities=14% Similarity=0.094 Sum_probs=26.2
Q ss_pred HccCCCEEEeecCCCC-CC-HHHHHHHHHHHHHhcCCcEEEEecc
Q psy1502 489 IVRNNVILVLDEATAN-VD-PKTDLLIQRTIRKKFADCTVLTIAH 531 (597)
Q Consensus 489 ll~~p~ILILDEaTSa-LD-~~te~~I~~~l~~~~~~~TvI~IaH 531 (597)
+.++|+++|+||+-.. .+ ..++...++....+..+.-++..+|
T Consensus 81 L~~~pdlvIVDElG~~~~~~~r~~~~~qDV~~~l~sgidVitT~N 125 (228)
T 2r8r_A 81 LKAAPSLVLVDELAHTNAPGSRHTKRWQDIQELLAAGIDVYTTVN 125 (228)
T ss_dssp HHHCCSEEEESCTTCBCCTTCSSSBHHHHHHHHHHTTCEEEEEEE
T ss_pred HhcCCCEEEEeCCCCCCcccchhHHHHHHHHHHHcCCCCEEEEcc
Confidence 3368999999997642 23 2334444444444445667777777
No 301
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=95.97 E-value=0.021 Score=59.15 Aligned_cols=26 Identities=35% Similarity=0.447 Sum_probs=22.8
Q ss_pred cCCcEEEEEcCCCCCHHHHHHHHhcc
Q psy1502 365 HPKEKIGIVGRTGAGKSSLIAAIFRL 390 (597)
Q Consensus 365 ~~G~~vaIVG~SGsGKSTL~~LL~~l 390 (597)
++..-+.|.||+|+|||||++.+...
T Consensus 82 ~~~~~iLL~GppGtGKT~la~ala~~ 107 (355)
T 2qp9_X 82 KPTSGILLYGPPGTGKSYLAKAVATE 107 (355)
T ss_dssp CCCCCEEEECSTTSCHHHHHHHHHHH
T ss_pred CCCceEEEECCCCCcHHHHHHHHHHH
Confidence 45667999999999999999999874
No 302
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=95.93 E-value=0.0026 Score=59.51 Aligned_cols=27 Identities=33% Similarity=0.431 Sum_probs=22.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhccccCCc
Q psy1502 369 KIGIVGRTGAGKSSLIAAIFRLAEVEG 395 (597)
Q Consensus 369 ~vaIVG~SGsGKSTL~~LL~~l~~~~G 395 (597)
.|+|.|++||||||+++.|...++..|
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~~g 28 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYLEKRG 28 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCC
Confidence 589999999999999999987654334
No 303
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=95.91 E-value=0.0037 Score=58.14 Aligned_cols=25 Identities=28% Similarity=0.335 Sum_probs=21.4
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHhcc
Q psy1502 366 PKEKIGIVGRTGAGKSSLIAAIFRL 390 (597)
Q Consensus 366 ~G~~vaIVG~SGsGKSTL~~LL~~l 390 (597)
++..|+|+|++||||||+.+.|..-
T Consensus 2 ~~~~I~l~G~~GsGKsT~a~~L~~~ 26 (196)
T 1tev_A 2 KPLVVFVLGGPGAGKGTQCARIVEK 26 (196)
T ss_dssp -CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHH
Confidence 3568999999999999999999753
No 304
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=95.89 E-value=0.016 Score=51.49 Aligned_cols=40 Identities=13% Similarity=0.074 Sum_probs=27.6
Q ss_pred CCCEEEeecCCCCCCHHHHHHHHHHHHHhc-CCcEEEEeccC
Q psy1502 492 NNVILVLDEATANVDPKTDLLIQRTIRKKF-ADCTVLTIAHR 532 (597)
Q Consensus 492 ~p~ILILDEaTSaLD~~te~~I~~~l~~~~-~~~TvI~IaHr 532 (597)
+..+|++||.- .++.+....+.+.+++.. .+..+|..|++
T Consensus 75 ~~~~l~lDei~-~l~~~~q~~Ll~~l~~~~~~~~~iI~~tn~ 115 (143)
T 3co5_A 75 EGGVLYVGDIA-QYSRNIQTGITFIIGKAERCRVRVIASCSY 115 (143)
T ss_dssp TTSEEEEEECT-TCCHHHHHHHHHHHHHHTTTTCEEEEEEEE
T ss_pred CCCeEEEeChH-HCCHHHHHHHHHHHHhCCCCCEEEEEecCC
Confidence 35689999975 567887778888887653 23456666654
No 305
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=95.88 E-value=0.0038 Score=58.00 Aligned_cols=24 Identities=25% Similarity=0.385 Sum_probs=21.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhcccc
Q psy1502 369 KIGIVGRTGAGKSSLIAAIFRLAE 392 (597)
Q Consensus 369 ~vaIVG~SGsGKSTL~~LL~~l~~ 392 (597)
.|.|.|++||||||+++.|..-+.
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l~ 26 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEILD 26 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 689999999999999999987554
No 306
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=95.87 E-value=0.0031 Score=58.28 Aligned_cols=26 Identities=23% Similarity=0.220 Sum_probs=17.9
Q ss_pred cCCcEEEEEcCCCCCHHHHHHHHhcc
Q psy1502 365 HPKEKIGIVGRTGAGKSSLIAAIFRL 390 (597)
Q Consensus 365 ~~G~~vaIVG~SGsGKSTL~~LL~~l 390 (597)
+++..|.|+|++||||||+.+.|...
T Consensus 3 ~~~~~I~l~G~~GsGKST~a~~La~~ 28 (183)
T 2vli_A 3 MRSPIIWINGPFGVGKTHTAHTLHER 28 (183)
T ss_dssp --CCEEEEECCC----CHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHh
Confidence 45788999999999999999999753
No 307
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=95.86 E-value=0.003 Score=58.77 Aligned_cols=28 Identities=21% Similarity=0.436 Sum_probs=23.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhccccCCce
Q psy1502 369 KIGIVGRTGAGKSSLIAAIFRLAEVEGV 396 (597)
Q Consensus 369 ~vaIVG~SGsGKSTL~~LL~~l~~~~G~ 396 (597)
.|+|.|++||||||+.+.|...++..|-
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~~g~ 29 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYLKQKGY 29 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCC
Confidence 5899999999999999999875543343
No 308
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=95.82 E-value=1.6 Score=47.92 Aligned_cols=101 Identities=8% Similarity=-0.063 Sum_probs=48.7
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccccccccchhHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1502 20 EEYRQFEILKNDTAFVEMYGRSTFFKIVNNTINQHHHFHLLSTESYI----GIYFSLIVGLFVAGISRSTAFYSACMRCS 95 (597)
Q Consensus 20 ~~~~~~~~~~~~~a~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~i----~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 95 (597)
..||...++..+.+++....+.+...++...++.-...........+ ..+++++++..++..+..+...+...++.
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (578)
T 4a82_A 10 KPYKYRIFATIIVGIIKFGIPMLIPLLIKYAIDGVINNHALTTDEKVHHLTIAIGIALFIFVIVRPPIEFIRQYLAQWTS 89 (578)
T ss_dssp GGGHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34554445445545555555544555555555432211111112223 22222333333444444555566677777
Q ss_pred HHHHHHHHHHHHcCCchhhcccChhHHHH
Q psy1502 96 KGIHKKMFEAVVYSPLAFFSTNPSGRILN 124 (597)
Q Consensus 96 ~~lr~~l~~~ll~~~~~~f~~~~sG~l~~ 124 (597)
.++..++-.++.+ ...+.+.+..-+
T Consensus 90 ~~~~~~lr~~l~~----~ll~~~~~~~~~ 114 (578)
T 4a82_A 90 NKILYDIRKKLYN----HLQALSARFYAN 114 (578)
T ss_dssp HHHHHHHHHHHHH----HHHHSCHHHHHT
T ss_pred HHHHHHHHHHHHH----HHHCCCHHHHcC
Confidence 7777777777633 334455555443
No 309
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=95.78 E-value=0.0046 Score=55.67 Aligned_cols=22 Identities=32% Similarity=0.468 Sum_probs=20.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhcc
Q psy1502 369 KIGIVGRTGAGKSSLIAAIFRL 390 (597)
Q Consensus 369 ~vaIVG~SGsGKSTL~~LL~~l 390 (597)
+++++|++|+|||||++.+.+-
T Consensus 4 ki~~vG~~~~GKSsli~~l~~~ 25 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFGGV 25 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHCCC
T ss_pred EEEEECCCCCCHHHHHHHHcCc
Confidence 6899999999999999999874
No 310
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=95.77 E-value=0.018 Score=65.85 Aligned_cols=23 Identities=30% Similarity=0.419 Sum_probs=21.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhccc
Q psy1502 369 KIGIVGRTGAGKSSLIAAIFRLA 391 (597)
Q Consensus 369 ~vaIVG~SGsGKSTL~~LL~~l~ 391 (597)
.+.++||+|+|||++++.|....
T Consensus 523 ~~Ll~Gp~GtGKT~lA~ala~~l 545 (758)
T 3pxi_A 523 SFIFLGPTGVGKTELARALAESI 545 (758)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999999854
No 311
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=95.77 E-value=0.007 Score=56.12 Aligned_cols=21 Identities=43% Similarity=0.751 Sum_probs=18.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q psy1502 369 KIGIVGRTGAGKSSLIAAIFR 389 (597)
Q Consensus 369 ~vaIVG~SGsGKSTL~~LL~~ 389 (597)
+|+|+|++|+|||||++-+.+
T Consensus 22 ki~ivG~~~vGKSsL~~~~~~ 42 (184)
T 3ihw_A 22 KVGIVGNLSSGKSALVHRYLT 42 (184)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 689999999999999976653
No 312
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=95.74 E-value=0.0053 Score=58.81 Aligned_cols=27 Identities=19% Similarity=0.306 Sum_probs=23.1
Q ss_pred cCCcEEEEEcCCCCCHHHHHHHHhccc
Q psy1502 365 HPKEKIGIVGRTGAGKSSLIAAIFRLA 391 (597)
Q Consensus 365 ~~G~~vaIVG~SGsGKSTL~~LL~~l~ 391 (597)
++|..|.|+|++||||||+.+.|...+
T Consensus 2 ~~~~~I~l~G~~GsGKsT~a~~La~~l 28 (220)
T 1aky_A 2 SESIRMVLIGPPGAGKGTQAPNLQERF 28 (220)
T ss_dssp -CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 357789999999999999999998643
No 313
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=95.72 E-value=0.0048 Score=58.78 Aligned_cols=21 Identities=33% Similarity=0.539 Sum_probs=19.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q psy1502 369 KIGIVGRTGAGKSSLIAAIFR 389 (597)
Q Consensus 369 ~vaIVG~SGsGKSTL~~LL~~ 389 (597)
+|+|.|++||||||+++.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIE 22 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999965
No 314
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=95.71 E-value=0.0048 Score=55.47 Aligned_cols=21 Identities=38% Similarity=0.583 Sum_probs=19.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q psy1502 369 KIGIVGRTGAGKSSLIAAIFR 389 (597)
Q Consensus 369 ~vaIVG~SGsGKSTL~~LL~~ 389 (597)
+|+++|++|+|||||++.+.+
T Consensus 7 ~i~v~G~~~~GKssl~~~l~~ 27 (168)
T 1z2a_A 7 KMVVVGNGAVGKSSMIQRYCK 27 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHc
Confidence 689999999999999999986
No 315
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=95.71 E-value=0.0051 Score=59.26 Aligned_cols=26 Identities=23% Similarity=0.300 Sum_probs=21.9
Q ss_pred cCCcEEEEEcCCCCCHHHHHHHHhcc
Q psy1502 365 HPKEKIGIVGRTGAGKSSLIAAIFRL 390 (597)
Q Consensus 365 ~~G~~vaIVG~SGsGKSTL~~LL~~l 390 (597)
.++..|.|+|++||||||+++.|..-
T Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~La~~ 30 (227)
T 1zd8_A 5 ARLLRAVIMGAPGSGKGTVSSRITTH 30 (227)
T ss_dssp --CCEEEEEECTTSSHHHHHHHHHHH
T ss_pred ccCcEEEEECCCCCCHHHHHHHHHHH
Confidence 45678999999999999999999853
No 316
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=95.69 E-value=0.0057 Score=57.64 Aligned_cols=26 Identities=19% Similarity=0.340 Sum_probs=22.3
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHhccc
Q psy1502 366 PKEKIGIVGRTGAGKSSLIAAIFRLA 391 (597)
Q Consensus 366 ~G~~vaIVG~SGsGKSTL~~LL~~l~ 391 (597)
.+..|+|+|++||||||+++.|...+
T Consensus 19 ~~~~I~l~G~~GsGKST~a~~La~~l 44 (201)
T 2cdn_A 19 SHMRVLLLGPPGAGKGTQAVKLAEKL 44 (201)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 35679999999999999999998643
No 317
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=95.65 E-value=0.0051 Score=58.99 Aligned_cols=26 Identities=23% Similarity=0.174 Sum_probs=22.6
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHhccc
Q psy1502 366 PKEKIGIVGRTGAGKSSLIAAIFRLA 391 (597)
Q Consensus 366 ~G~~vaIVG~SGsGKSTL~~LL~~l~ 391 (597)
.+..|.|+|++||||||+.+.|..-+
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La~~l 29 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIKTKY 29 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 45689999999999999999998643
No 318
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=95.64 E-value=0.0058 Score=57.59 Aligned_cols=25 Identities=24% Similarity=0.337 Sum_probs=21.6
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHhcc
Q psy1502 366 PKEKIGIVGRTGAGKSSLIAAIFRL 390 (597)
Q Consensus 366 ~G~~vaIVG~SGsGKSTL~~LL~~l 390 (597)
....|+|+|++||||||+.+.|..-
T Consensus 14 ~~~~I~l~G~~GsGKsT~~~~L~~~ 38 (203)
T 1ukz_A 14 QVSVIFVLGGPGAGKGTQCEKLVKD 38 (203)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 3457999999999999999999853
No 319
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=95.64 E-value=0.012 Score=61.02 Aligned_cols=25 Identities=32% Similarity=0.291 Sum_probs=22.2
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHhcc
Q psy1502 366 PKEKIGIVGRTGAGKSSLIAAIFRL 390 (597)
Q Consensus 366 ~G~~vaIVG~SGsGKSTL~~LL~~l 390 (597)
.+..+.|.||+|+|||||++.+.+.
T Consensus 44 ~~~~vll~G~~G~GKT~la~~l~~~ 68 (384)
T 2qby_B 44 VKFSNLFLGLTGTGKTFVSKYIFNE 68 (384)
T ss_dssp CCCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHH
Confidence 3568999999999999999999874
No 320
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=95.63 E-value=0.0035 Score=63.20 Aligned_cols=26 Identities=23% Similarity=0.388 Sum_probs=19.7
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHhccc
Q psy1502 366 PKEKIGIVGRTGAGKSSLIAAIFRLA 391 (597)
Q Consensus 366 ~G~~vaIVG~SGsGKSTL~~LL~~l~ 391 (597)
++-.|||.|+|||||||+.+.|...+
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~~l 29 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQIF 29 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHH
Confidence 45689999999999999999998744
No 321
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=95.63 E-value=0.005 Score=57.04 Aligned_cols=23 Identities=30% Similarity=0.430 Sum_probs=20.7
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcc
Q psy1502 368 EKIGIVGRTGAGKSSLIAAIFRL 390 (597)
Q Consensus 368 ~~vaIVG~SGsGKSTL~~LL~~l 390 (597)
..|+|+|++||||||+.+.|...
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~ 25 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKA 25 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 46999999999999999999863
No 322
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=95.62 E-value=0.0059 Score=55.70 Aligned_cols=23 Identities=30% Similarity=0.427 Sum_probs=20.7
Q ss_pred CcEEEEEcCCCCCHHHHHHHHhc
Q psy1502 367 KEKIGIVGRTGAGKSSLIAAIFR 389 (597)
Q Consensus 367 G~~vaIVG~SGsGKSTL~~LL~~ 389 (597)
-+.++|.|+.||||||+.+.|..
T Consensus 7 ~~~i~l~G~~GsGKSTva~~La~ 29 (168)
T 1zuh_A 7 MQHLVLIGFMGSGKSSLAQELGL 29 (168)
T ss_dssp -CEEEEESCTTSSHHHHHHHHHH
T ss_pred cceEEEECCCCCCHHHHHHHHHH
Confidence 37899999999999999999975
No 323
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=95.62 E-value=0.0058 Score=55.40 Aligned_cols=22 Identities=27% Similarity=0.492 Sum_probs=20.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhcc
Q psy1502 369 KIGIVGRTGAGKSSLIAAIFRL 390 (597)
Q Consensus 369 ~vaIVG~SGsGKSTL~~LL~~l 390 (597)
+|+++|++|+|||||++.+.+-
T Consensus 6 ki~i~G~~~vGKSsl~~~l~~~ 27 (175)
T 2nzj_A 6 RVVLLGDPGVGKTSLASLFAGK 27 (175)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCccHHHHHHHHhcC
Confidence 6899999999999999999863
No 324
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=95.62 E-value=0.0059 Score=55.05 Aligned_cols=21 Identities=33% Similarity=0.705 Sum_probs=19.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q psy1502 369 KIGIVGRTGAGKSSLIAAIFR 389 (597)
Q Consensus 369 ~vaIVG~SGsGKSTL~~LL~~ 389 (597)
+|+++|++|+|||||++.+.+
T Consensus 5 ~i~v~G~~~~GKssli~~l~~ 25 (172)
T 2erx_A 5 RVAVFGAGGVGKSSLVLRFVK 25 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 689999999999999999986
No 325
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=95.62 E-value=0.06 Score=54.85 Aligned_cols=23 Identities=30% Similarity=0.380 Sum_probs=20.7
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcc
Q psy1502 368 EKIGIVGRTGAGKSSLIAAIFRL 390 (597)
Q Consensus 368 ~~vaIVG~SGsGKSTL~~LL~~l 390 (597)
..+.|.||+|+|||||++.+...
T Consensus 56 ~~vll~G~~GtGKT~la~~ia~~ 78 (338)
T 3pfi_A 56 DHILFSGPAGLGKTTLANIISYE 78 (338)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEECcCCCCHHHHHHHHHHH
Confidence 46899999999999999999764
No 326
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=95.61 E-value=0.0057 Score=57.72 Aligned_cols=23 Identities=30% Similarity=0.537 Sum_probs=20.8
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcc
Q psy1502 368 EKIGIVGRTGAGKSSLIAAIFRL 390 (597)
Q Consensus 368 ~~vaIVG~SGsGKSTL~~LL~~l 390 (597)
-.|+|+|++||||||+.+.|...
T Consensus 13 ~iIgltG~~GSGKSTva~~L~~~ 35 (192)
T 2grj_A 13 MVIGVTGKIGTGKSTVCEILKNK 35 (192)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 46999999999999999999864
No 327
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=95.61 E-value=0.006 Score=55.03 Aligned_cols=22 Identities=41% Similarity=0.619 Sum_probs=20.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhcc
Q psy1502 369 KIGIVGRTGAGKSSLIAAIFRL 390 (597)
Q Consensus 369 ~vaIVG~SGsGKSTL~~LL~~l 390 (597)
+|+++|++|+|||||++.+.+.
T Consensus 4 ki~ivG~~~~GKSsli~~l~~~ 25 (169)
T 3q85_A 4 KVMLVGESGVGKSTLAGTFGGL 25 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 6899999999999999999763
No 328
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=95.60 E-value=0.0056 Score=54.78 Aligned_cols=21 Identities=33% Similarity=0.591 Sum_probs=19.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q psy1502 369 KIGIVGRTGAGKSSLIAAIFR 389 (597)
Q Consensus 369 ~vaIVG~SGsGKSTL~~LL~~ 389 (597)
+|+++|++|+|||||++.+.+
T Consensus 5 ~i~v~G~~~~GKSsli~~l~~ 25 (167)
T 1kao_A 5 KVVVLGSGGVGKSALTVQFVT 25 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 689999999999999998874
No 329
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=95.60 E-value=0.0056 Score=54.65 Aligned_cols=21 Identities=38% Similarity=0.661 Sum_probs=19.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q psy1502 369 KIGIVGRTGAGKSSLIAAIFR 389 (597)
Q Consensus 369 ~vaIVG~SGsGKSTL~~LL~~ 389 (597)
+++++|++|+|||||++.+.+
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~ 25 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQ 25 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 689999999999999999985
No 330
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=95.59 E-value=0.0057 Score=58.28 Aligned_cols=22 Identities=27% Similarity=0.389 Sum_probs=19.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhcc
Q psy1502 369 KIGIVGRTGAGKSSLIAAIFRL 390 (597)
Q Consensus 369 ~vaIVG~SGsGKSTL~~LL~~l 390 (597)
+|+|+|++||||||+++.|..-
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~ 23 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEK 23 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999753
No 331
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=95.59 E-value=0.005 Score=60.91 Aligned_cols=27 Identities=22% Similarity=0.285 Sum_probs=23.0
Q ss_pred cCCcEEEEEcCCCCCHHHHHHHHhccc
Q psy1502 365 HPKEKIGIVGRTGAGKSSLIAAIFRLA 391 (597)
Q Consensus 365 ~~G~~vaIVG~SGsGKSTL~~LL~~l~ 391 (597)
+++..|.|+|++||||||+++.|....
T Consensus 2 ~~~~lIvl~G~pGSGKSTla~~La~~L 28 (260)
T 3a4m_A 2 GDIMLIILTGLPGVGKSTFSKNLAKIL 28 (260)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEEEcCCCCCHHHHHHHHHHHH
Confidence 356789999999999999999998743
No 332
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=95.59 E-value=0.0055 Score=57.73 Aligned_cols=22 Identities=27% Similarity=0.347 Sum_probs=20.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhcc
Q psy1502 369 KIGIVGRTGAGKSSLIAAIFRL 390 (597)
Q Consensus 369 ~vaIVG~SGsGKSTL~~LL~~l 390 (597)
.++|.|++||||||+.+.|.+.
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~ 25 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAA 25 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 7999999999999999999874
No 333
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=95.58 E-value=0.0054 Score=56.01 Aligned_cols=23 Identities=30% Similarity=0.429 Sum_probs=20.6
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcc
Q psy1502 368 EKIGIVGRTGAGKSSLIAAIFRL 390 (597)
Q Consensus 368 ~~vaIVG~SGsGKSTL~~LL~~l 390 (597)
..|+|+|++||||||+.+.|...
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~ 25 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARA 25 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 46899999999999999999863
No 334
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=95.57 E-value=0.0056 Score=60.85 Aligned_cols=22 Identities=27% Similarity=0.602 Sum_probs=20.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhcc
Q psy1502 369 KIGIVGRTGAGKSSLIAAIFRL 390 (597)
Q Consensus 369 ~vaIVG~SGsGKSTL~~LL~~l 390 (597)
+|+++|++|||||||++.|.|.
T Consensus 5 ~i~lvG~~g~GKTTL~n~l~g~ 26 (271)
T 3k53_A 5 TVALVGNPNVGKTTIFNALTGL 26 (271)
T ss_dssp EEEEEECSSSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 7899999999999999999985
No 335
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=95.57 E-value=0.0061 Score=55.43 Aligned_cols=22 Identities=27% Similarity=0.362 Sum_probs=20.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhcc
Q psy1502 369 KIGIVGRTGAGKSSLIAAIFRL 390 (597)
Q Consensus 369 ~vaIVG~SGsGKSTL~~LL~~l 390 (597)
.|+|+|++||||||+.+.|...
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~ 23 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRS 23 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999863
No 336
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=95.56 E-value=0.0057 Score=56.74 Aligned_cols=25 Identities=28% Similarity=0.333 Sum_probs=21.9
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHhcc
Q psy1502 366 PKEKIGIVGRTGAGKSSLIAAIFRL 390 (597)
Q Consensus 366 ~G~~vaIVG~SGsGKSTL~~LL~~l 390 (597)
+.=+++++|++|+|||||++.+.+-
T Consensus 47 ~~~~i~vvG~~g~GKSsll~~l~~~ 71 (193)
T 2ged_A 47 YQPSIIIAGPQNSGKTSLLTLLTTD 71 (193)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 3448999999999999999999874
No 337
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=95.54 E-value=0.0061 Score=54.59 Aligned_cols=21 Identities=38% Similarity=0.566 Sum_probs=19.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q psy1502 369 KIGIVGRTGAGKSSLIAAIFR 389 (597)
Q Consensus 369 ~vaIVG~SGsGKSTL~~LL~~ 389 (597)
+|+++|++|+|||||++.+.+
T Consensus 6 ~i~v~G~~~~GKssl~~~l~~ 26 (168)
T 1u8z_A 6 KVIMVGSGGVGKSALTLQFMY 26 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 689999999999999999985
No 338
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=95.53 E-value=0.0059 Score=60.83 Aligned_cols=22 Identities=41% Similarity=0.733 Sum_probs=19.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhcc
Q psy1502 369 KIGIVGRTGAGKSSLIAAIFRL 390 (597)
Q Consensus 369 ~vaIVG~SGsGKSTL~~LL~~l 390 (597)
+|++||++|+|||||++.|.+-
T Consensus 10 ~I~vvG~~g~GKSTLin~L~~~ 31 (274)
T 3t5d_A 10 TLMVVGESGLGKSTLINSLFLT 31 (274)
T ss_dssp EEEEEECTTSSHHHHHHHHSSS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999998763
No 339
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=95.53 E-value=0.0061 Score=54.92 Aligned_cols=21 Identities=38% Similarity=0.684 Sum_probs=19.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q psy1502 369 KIGIVGRTGAGKSSLIAAIFR 389 (597)
Q Consensus 369 ~vaIVG~SGsGKSTL~~LL~~ 389 (597)
+|+++|++|+|||||++.+.+
T Consensus 5 ~i~v~G~~~~GKssli~~l~~ 25 (170)
T 1g16_A 5 KILLIGDSGVGKSCLLVRFVE 25 (170)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHh
Confidence 689999999999999999985
No 340
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=95.52 E-value=0.0062 Score=54.36 Aligned_cols=22 Identities=45% Similarity=0.697 Sum_probs=20.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhcc
Q psy1502 369 KIGIVGRTGAGKSSLIAAIFRL 390 (597)
Q Consensus 369 ~vaIVG~SGsGKSTL~~LL~~l 390 (597)
+++++|++|+|||||++.+.+-
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLFNRLLKK 24 (161)
T ss_dssp EEEEECCTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999999863
No 341
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=95.52 E-value=0.0068 Score=56.21 Aligned_cols=24 Identities=29% Similarity=0.428 Sum_probs=21.3
Q ss_pred CcEEEEEcCCCCCHHHHHHHHhcc
Q psy1502 367 KEKIGIVGRTGAGKSSLIAAIFRL 390 (597)
Q Consensus 367 G~~vaIVG~SGsGKSTL~~LL~~l 390 (597)
+..|+|+|++||||||+.+.|...
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~ 29 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRD 29 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 457999999999999999999763
No 342
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=95.51 E-value=0.0063 Score=54.60 Aligned_cols=21 Identities=33% Similarity=0.613 Sum_probs=19.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q psy1502 369 KIGIVGRTGAGKSSLIAAIFR 389 (597)
Q Consensus 369 ~vaIVG~SGsGKSTL~~LL~~ 389 (597)
+++++|++|+|||||++.+.+
T Consensus 5 ki~v~G~~~~GKssli~~l~~ 25 (167)
T 1c1y_A 5 KLVVLGSGGVGKSALTVQFVQ 25 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 689999999999999999985
No 343
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=95.51 E-value=0.03 Score=57.75 Aligned_cols=43 Identities=9% Similarity=0.094 Sum_probs=32.1
Q ss_pred CCCEEEeecCCCCCCHHHHHHHHHHHHHhcCCcEEEEeccCchh
Q psy1502 492 NNVILVLDEATANVDPKTDLLIQRTIRKKFADCTVLTIAHRLHT 535 (597)
Q Consensus 492 ~p~ILILDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrlst 535 (597)
++.++++||+- .++.+....+.+.+++...+..+|+++++...
T Consensus 119 ~~~vliiDe~~-~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~ 161 (373)
T 1jr3_A 119 RFKVYLIDEVH-MLSRHSFNALLKTLEEPPEHVKFLLATTDPQK 161 (373)
T ss_dssp SSEEEEEECGG-GSCHHHHHHHHHHHHSCCSSEEEEEEESCGGG
T ss_pred CeEEEEEECcc-hhcHHHHHHHHHHHhcCCCceEEEEEeCChHh
Confidence 57899999975 46778778888888775555667777876653
No 344
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=95.49 E-value=0.0066 Score=56.36 Aligned_cols=24 Identities=33% Similarity=0.595 Sum_probs=21.4
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHhc
Q psy1502 366 PKEKIGIVGRTGAGKSSLIAAIFR 389 (597)
Q Consensus 366 ~G~~vaIVG~SGsGKSTL~~LL~~ 389 (597)
..-+++++|++|+|||||++.|.+
T Consensus 22 ~~~~i~v~G~~~~GKSsli~~l~~ 45 (195)
T 1svi_A 22 GLPEIALAGRSNVGKSSFINSLIN 45 (195)
T ss_dssp CCCEEEEEEBTTSSHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhC
Confidence 345799999999999999999986
No 345
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=95.49 E-value=0.04 Score=59.69 Aligned_cols=27 Identities=22% Similarity=0.327 Sum_probs=22.1
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHhcccc
Q psy1502 366 PKEKIGIVGRTGAGKSSLIAAIFRLAE 392 (597)
Q Consensus 366 ~G~~vaIVG~SGsGKSTL~~LL~~l~~ 392 (597)
+...|+|||++||||||++.-|+..+.
T Consensus 100 ~~~vI~ivG~~GvGKTTl~~kLA~~l~ 126 (504)
T 2j37_W 100 KQNVIMFVGLQGSGKTTTCSKLAYYYQ 126 (504)
T ss_dssp --EEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 345799999999999999999986553
No 346
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=95.48 E-value=0.0066 Score=54.68 Aligned_cols=22 Identities=36% Similarity=0.564 Sum_probs=20.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhcc
Q psy1502 369 KIGIVGRTGAGKSSLIAAIFRL 390 (597)
Q Consensus 369 ~vaIVG~SGsGKSTL~~LL~~l 390 (597)
+|+++|++|+|||||++.+.+-
T Consensus 8 ~i~v~G~~~~GKSsli~~l~~~ 29 (170)
T 1z0j_A 8 KVCLLGDTGVGKSSIMWRFVED 29 (170)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 6899999999999999999863
No 347
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=95.47 E-value=0.0082 Score=54.63 Aligned_cols=25 Identities=28% Similarity=0.453 Sum_probs=22.4
Q ss_pred cCCcEEEEEcCCCCCHHHHHHHHhc
Q psy1502 365 HPKEKIGIVGRTGAGKSSLIAAIFR 389 (597)
Q Consensus 365 ~~G~~vaIVG~SGsGKSTL~~LL~~ 389 (597)
++.-+|+++|++|+|||||++.+.+
T Consensus 6 ~~~~~i~v~G~~~~GKssl~~~l~~ 30 (178)
T 2lkc_A 6 ERPPVVTIMGHVDHGKTTLLDAIRH 30 (178)
T ss_dssp CCCCEEEEESCTTTTHHHHHHHHHT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhC
Confidence 4567899999999999999999986
No 348
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=95.47 E-value=0.0066 Score=54.74 Aligned_cols=21 Identities=29% Similarity=0.466 Sum_probs=19.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q psy1502 369 KIGIVGRTGAGKSSLIAAIFR 389 (597)
Q Consensus 369 ~vaIVG~SGsGKSTL~~LL~~ 389 (597)
+|+++|++|+|||||++.+.+
T Consensus 8 ~i~v~G~~~~GKssli~~l~~ 28 (170)
T 1z08_A 8 KVVLLGEGCVGKTSLVLRYCE 28 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHc
Confidence 689999999999999999985
No 349
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=95.46 E-value=0.0068 Score=54.51 Aligned_cols=21 Identities=29% Similarity=0.551 Sum_probs=19.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q psy1502 369 KIGIVGRTGAGKSSLIAAIFR 389 (597)
Q Consensus 369 ~vaIVG~SGsGKSTL~~LL~~ 389 (597)
+|+++|++|+|||||++.+.+
T Consensus 5 ~i~v~G~~~~GKssli~~l~~ 25 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIVLRFVS 25 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 689999999999999999985
No 350
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=95.46 E-value=0.0069 Score=55.14 Aligned_cols=21 Identities=43% Similarity=0.648 Sum_probs=19.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q psy1502 369 KIGIVGRTGAGKSSLIAAIFR 389 (597)
Q Consensus 369 ~vaIVG~SGsGKSTL~~LL~~ 389 (597)
+|+++|++|+|||||++.+.+
T Consensus 11 ~i~v~G~~~~GKssl~~~l~~ 31 (181)
T 3tw8_B 11 KLLIIGDSGVGKSSLLLRFAD 31 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHCS
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 689999999999999999986
No 351
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=95.44 E-value=0.0067 Score=55.26 Aligned_cols=22 Identities=36% Similarity=0.566 Sum_probs=20.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhcc
Q psy1502 369 KIGIVGRTGAGKSSLIAAIFRL 390 (597)
Q Consensus 369 ~vaIVG~SGsGKSTL~~LL~~l 390 (597)
+|+++|++|+|||||++.+.+-
T Consensus 11 ~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 11 KLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 6899999999999999999863
No 352
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=95.44 E-value=0.007 Score=55.94 Aligned_cols=23 Identities=43% Similarity=0.764 Sum_probs=20.9
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcc
Q psy1502 368 EKIGIVGRTGAGKSSLIAAIFRL 390 (597)
Q Consensus 368 ~~vaIVG~SGsGKSTL~~LL~~l 390 (597)
-+++++|++|+|||||++.+.+-
T Consensus 24 ~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 3pqc_A 24 GEVAFVGRSNVGKSSLLNALFNR 46 (195)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHTS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 47999999999999999999874
No 353
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=95.44 E-value=0.0068 Score=55.24 Aligned_cols=21 Identities=38% Similarity=0.642 Sum_probs=19.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q psy1502 369 KIGIVGRTGAGKSSLIAAIFR 389 (597)
Q Consensus 369 ~vaIVG~SGsGKSTL~~LL~~ 389 (597)
+|+++|++|+|||||++.+.+
T Consensus 10 ~i~v~G~~~~GKSsli~~l~~ 30 (182)
T 1ky3_A 10 KVIILGDSGVGKTSLMHRYVN 30 (182)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 699999999999999998875
No 354
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=95.42 E-value=0.007 Score=55.07 Aligned_cols=21 Identities=38% Similarity=0.593 Sum_probs=19.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q psy1502 369 KIGIVGRTGAGKSSLIAAIFR 389 (597)
Q Consensus 369 ~vaIVG~SGsGKSTL~~LL~~ 389 (597)
+|+++|++|+|||||++.+.+
T Consensus 9 ~i~v~G~~~~GKSsli~~l~~ 29 (177)
T 1wms_A 9 KVILLGDGGVGKSSLMNRYVT 29 (177)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 689999999999999999985
No 355
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=95.42 E-value=0.007 Score=59.44 Aligned_cols=22 Identities=45% Similarity=0.590 Sum_probs=20.3
Q ss_pred cEEEEEcCCCCCHHHHHHHHhc
Q psy1502 368 EKIGIVGRTGAGKSSLIAAIFR 389 (597)
Q Consensus 368 ~~vaIVG~SGsGKSTL~~LL~~ 389 (597)
-.|+|.|++||||||+.+.|..
T Consensus 23 ~iI~I~G~~GSGKST~a~~L~~ 44 (252)
T 1uj2_A 23 FLIGVSGGTASGKSSVCAKIVQ 44 (252)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 4699999999999999999976
No 356
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=95.41 E-value=0.0075 Score=58.98 Aligned_cols=25 Identities=20% Similarity=0.379 Sum_probs=22.3
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHhcc
Q psy1502 366 PKEKIGIVGRTGAGKSSLIAAIFRL 390 (597)
Q Consensus 366 ~G~~vaIVG~SGsGKSTL~~LL~~l 390 (597)
++-.|+|.|++||||||+++.|..-
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~~ 52 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKKS 52 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 5668999999999999999999753
No 357
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=95.40 E-value=0.01 Score=56.10 Aligned_cols=33 Identities=18% Similarity=0.250 Sum_probs=26.4
Q ss_pred cceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhc
Q psy1502 356 VIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFR 389 (597)
Q Consensus 356 vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~ 389 (597)
.+...-+. ..|..+.|+||||||||||+.-|..
T Consensus 24 ~lHa~~v~-~~g~~ilI~GpsGsGKStLA~~La~ 56 (205)
T 2qmh_A 24 SMHGVLVD-IYGLGVLITGDSGVGKSETALELVQ 56 (205)
T ss_dssp CEESEEEE-ETTEEEEEECCCTTTTHHHHHHHHT
T ss_pred eeeEEEEE-ECCEEEEEECCCCCCHHHHHHHHHH
Confidence 45555444 4688999999999999999998874
No 358
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=95.37 E-value=0.0077 Score=55.59 Aligned_cols=24 Identities=25% Similarity=0.416 Sum_probs=21.2
Q ss_pred CcEEEEEcCCCCCHHHHHHHHhcc
Q psy1502 367 KEKIGIVGRTGAGKSSLIAAIFRL 390 (597)
Q Consensus 367 G~~vaIVG~SGsGKSTL~~LL~~l 390 (597)
.=+++++|++|+|||||++.+.+-
T Consensus 16 ~~ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 16 EVRILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp CEEEEEEESTTSSHHHHHHHHCCS
T ss_pred ceEEEEECCCCCCHHHHHHHHhcC
Confidence 347999999999999999999863
No 359
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=95.37 E-value=0.0076 Score=54.16 Aligned_cols=21 Identities=33% Similarity=0.631 Sum_probs=19.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q psy1502 369 KIGIVGRTGAGKSSLIAAIFR 389 (597)
Q Consensus 369 ~vaIVG~SGsGKSTL~~LL~~ 389 (597)
+|+++|++|+|||||++.+.+
T Consensus 8 ~i~v~G~~~~GKssli~~l~~ 28 (170)
T 1r2q_A 8 KLVLLGESAVGKSSLVLRFVK 28 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 689999999999999999985
No 360
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=95.32 E-value=0.008 Score=60.23 Aligned_cols=23 Identities=30% Similarity=0.484 Sum_probs=20.9
Q ss_pred CcEEEEEcCCCCCHHHHHHHHhc
Q psy1502 367 KEKIGIVGRTGAGKSSLIAAIFR 389 (597)
Q Consensus 367 G~~vaIVG~SGsGKSTL~~LL~~ 389 (597)
...|+|+|++||||||+++.|..
T Consensus 75 ~~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 75 LYVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999999985
No 361
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=95.32 E-value=0.0082 Score=55.29 Aligned_cols=22 Identities=36% Similarity=0.459 Sum_probs=20.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhcc
Q psy1502 369 KIGIVGRTGAGKSSLIAAIFRL 390 (597)
Q Consensus 369 ~vaIVG~SGsGKSTL~~LL~~l 390 (597)
+|+++|++|+|||||++.+.+-
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~ 24 (190)
T 2cxx_A 3 TIIFAGRSNVGKSTLIYRLTGK 24 (190)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhCc
Confidence 5899999999999999999873
No 362
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=95.32 E-value=0.0079 Score=55.28 Aligned_cols=21 Identities=38% Similarity=0.678 Sum_probs=19.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q psy1502 369 KIGIVGRTGAGKSSLIAAIFR 389 (597)
Q Consensus 369 ~vaIVG~SGsGKSTL~~LL~~ 389 (597)
+|+++|++|+|||||++.|.+
T Consensus 6 ki~v~G~~~~GKSsli~~l~~ 26 (189)
T 4dsu_A 6 KLVVVGADGVGKSALTIQLIQ 26 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 689999999999999999985
No 363
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=95.31 E-value=0.0085 Score=61.45 Aligned_cols=27 Identities=26% Similarity=0.353 Sum_probs=23.3
Q ss_pred cCCcEEEEEcCCCCCHHHHHHHHhccc
Q psy1502 365 HPKEKIGIVGRTGAGKSSLIAAIFRLA 391 (597)
Q Consensus 365 ~~G~~vaIVG~SGsGKSTL~~LL~~l~ 391 (597)
+++..+.|+||||||||||...|+.-+
T Consensus 38 ~~~~lIvI~GPTgsGKTtLa~~LA~~l 64 (339)
T 3a8t_A 38 RKEKLLVLMGATGTGKSRLSIDLAAHF 64 (339)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHTTS
T ss_pred cCCceEEEECCCCCCHHHHHHHHHHHC
Confidence 356789999999999999999998743
No 364
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.31 E-value=0.037 Score=55.63 Aligned_cols=43 Identities=16% Similarity=0.232 Sum_probs=30.4
Q ss_pred CCCEEEeecCCCCCCHHHHHHHHHHHHHhcCCcEEEEeccCchh
Q psy1502 492 NNVILVLDEATANVDPKTDLLIQRTIRKKFADCTVLTIAHRLHT 535 (597)
Q Consensus 492 ~p~ILILDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrlst 535 (597)
++.++++||+-. ++.+....+.+.+.+...+..+|+++++...
T Consensus 107 ~~~viiiDe~~~-l~~~~~~~L~~~le~~~~~~~~il~~~~~~~ 149 (323)
T 1sxj_B 107 KHKIVILDEADS-MTAGAQQALRRTMELYSNSTRFAFACNQSNK 149 (323)
T ss_dssp CCEEEEEESGGG-SCHHHHHTTHHHHHHTTTTEEEEEEESCGGG
T ss_pred CceEEEEECccc-CCHHHHHHHHHHHhccCCCceEEEEeCChhh
Confidence 488999999743 5556666677777776556677777777543
No 365
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=95.29 E-value=0.0081 Score=55.77 Aligned_cols=21 Identities=33% Similarity=0.748 Sum_probs=19.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q psy1502 369 KIGIVGRTGAGKSSLIAAIFR 389 (597)
Q Consensus 369 ~vaIVG~SGsGKSTL~~LL~~ 389 (597)
+|+|+|++|+|||||++.+.+
T Consensus 27 ki~v~G~~~~GKSsLi~~l~~ 47 (193)
T 2oil_A 27 KVVLIGESGVGKTNLLSRFTR 47 (193)
T ss_dssp EEEEESSTTSSHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHhc
Confidence 689999999999999999986
No 366
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=95.27 E-value=0.0084 Score=59.79 Aligned_cols=23 Identities=30% Similarity=0.521 Sum_probs=21.2
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcc
Q psy1502 368 EKIGIVGRTGAGKSSLIAAIFRL 390 (597)
Q Consensus 368 ~~vaIVG~SGsGKSTL~~LL~~l 390 (597)
-+|+++|++|+|||||++.|.|-
T Consensus 4 ~kI~lvG~~nvGKSTL~n~L~g~ 26 (272)
T 3b1v_A 4 TEIALIGNPNSGKTSLFNLITGH 26 (272)
T ss_dssp EEEEEECCTTSSHHHHHHHHHCC
T ss_pred eEEEEECCCCCCHHHHHHHHHCC
Confidence 37999999999999999999985
No 367
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=95.26 E-value=0.01 Score=61.87 Aligned_cols=30 Identities=37% Similarity=0.653 Sum_probs=25.2
Q ss_pred eeeeEEEcCCcEEEEEcCCCCCHHHHHHHHh
Q psy1502 358 KNLNITIHPKEKIGIVGRTGAGKSSLIAAIF 388 (597)
Q Consensus 358 ~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~ 388 (597)
++..+++.+ ....|+|+||||||||+..|.
T Consensus 17 ~~~~i~f~~-gl~vi~G~NGaGKT~ileAI~ 46 (371)
T 3auy_A 17 VNSRIKFEK-GIVAIIGENGSGKSSIFEAVF 46 (371)
T ss_dssp EEEEEECCS-EEEEEEECTTSSHHHHHHHHH
T ss_pred cceEEecCC-CeEEEECCCCCCHHHHHHHHH
Confidence 556666666 589999999999999999886
No 368
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=95.26 E-value=0.0083 Score=55.64 Aligned_cols=23 Identities=26% Similarity=0.404 Sum_probs=20.7
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcc
Q psy1502 368 EKIGIVGRTGAGKSSLIAAIFRL 390 (597)
Q Consensus 368 ~~vaIVG~SGsGKSTL~~LL~~l 390 (597)
=+|+++|++|+|||||++.|++-
T Consensus 8 ~ki~v~G~~~~GKSsli~~l~~~ 30 (208)
T 3clv_A 8 YKTVLLGESSVGKSSIVLRLTKD 30 (208)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 36999999999999999999864
No 369
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=95.26 E-value=0.0084 Score=55.21 Aligned_cols=21 Identities=29% Similarity=0.442 Sum_probs=19.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q psy1502 369 KIGIVGRTGAGKSSLIAAIFR 389 (597)
Q Consensus 369 ~vaIVG~SGsGKSTL~~LL~~ 389 (597)
+|+|+|++|+|||||++.+.+
T Consensus 13 ki~v~G~~~~GKSsli~~l~~ 33 (195)
T 3bc1_A 13 KFLALGDSGVGKTSVLYQYTD 33 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 689999999999999999985
No 370
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=95.25 E-value=0.0087 Score=53.65 Aligned_cols=21 Identities=29% Similarity=0.455 Sum_probs=19.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q psy1502 369 KIGIVGRTGAGKSSLIAAIFR 389 (597)
Q Consensus 369 ~vaIVG~SGsGKSTL~~LL~~ 389 (597)
+++++|++|+|||||++.+.+
T Consensus 2 ki~~~G~~~~GKssl~~~l~~ 22 (164)
T 1r8s_A 2 RILMVGLDAAGKTTILYKLKL 22 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 589999999999999999975
No 371
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=95.24 E-value=0.012 Score=61.14 Aligned_cols=23 Identities=43% Similarity=0.580 Sum_probs=21.5
Q ss_pred CcEEEEEcCCCCCHHHHHHHHhc
Q psy1502 367 KEKIGIVGRTGAGKSSLIAAIFR 389 (597)
Q Consensus 367 G~~vaIVG~SGsGKSTL~~LL~~ 389 (597)
|-+++|||.+|+|||||++.|.+
T Consensus 2 ~~kI~IVG~pnvGKSTL~n~Lt~ 24 (363)
T 1jal_A 2 GFKCGIVGLPNVGKSTLFNALTK 24 (363)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHC
Confidence 56899999999999999999997
No 372
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=95.23 E-value=4.6 Score=44.31 Aligned_cols=47 Identities=15% Similarity=0.028 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhhcccChhHHHH
Q psy1502 74 VGLFVAGISRSTAFYSACMRCSKGIHKKMFEAVVYSPLAFFSTNPSGRILN 124 (597)
Q Consensus 74 i~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~~f~~~~sG~l~~ 124 (597)
++..++..+..+...+...++..++..++-.++.+ ...+.+.+..-+
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~----~ll~~~~~~~~~ 118 (582)
T 3b5x_A 72 LGLMFVRGLSGFASSYCLSWVSGNVVMQMRRRLFN----HFMHMPVRFFDQ 118 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHcCCHHHHCC
Confidence 33344445555555566667777777777666643 334455554443
No 373
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=95.22 E-value=0.0088 Score=54.34 Aligned_cols=21 Identities=33% Similarity=0.561 Sum_probs=19.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q psy1502 369 KIGIVGRTGAGKSSLIAAIFR 389 (597)
Q Consensus 369 ~vaIVG~SGsGKSTL~~LL~~ 389 (597)
+|+++|++|+|||||++.+.+
T Consensus 16 ~i~v~G~~~~GKssli~~l~~ 36 (179)
T 2y8e_A 16 KLVFLGEQSVGKTSLITRFMY 36 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 689999999999999999985
No 374
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=95.21 E-value=0.051 Score=54.88 Aligned_cols=25 Identities=32% Similarity=0.494 Sum_probs=21.8
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHhcc
Q psy1502 366 PKEKIGIVGRTGAGKSSLIAAIFRL 390 (597)
Q Consensus 366 ~G~~vaIVG~SGsGKSTL~~LL~~l 390 (597)
+...+.|.||+|+|||||++.+...
T Consensus 37 ~~~~vll~G~~GtGKT~la~~i~~~ 61 (324)
T 1hqc_A 37 PLEHLLLFGPPGLGKTTLAHVIAHE 61 (324)
T ss_dssp CCCCCEEECCTTCCCHHHHHHHHHH
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHH
Confidence 4467999999999999999999763
No 375
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=95.21 E-value=0.0097 Score=54.13 Aligned_cols=21 Identities=33% Similarity=0.537 Sum_probs=19.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q psy1502 369 KIGIVGRTGAGKSSLIAAIFR 389 (597)
Q Consensus 369 ~vaIVG~SGsGKSTL~~LL~~ 389 (597)
+|+++|++|+|||||++.+.+
T Consensus 8 ki~v~G~~~~GKssl~~~l~~ 28 (178)
T 2hxs_A 8 KIVVLGDGASGKTSLTTCFAQ 28 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHG
T ss_pred EEEEECcCCCCHHHHHHHHHh
Confidence 689999999999999999985
No 376
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=95.20 E-value=0.0092 Score=53.82 Aligned_cols=24 Identities=29% Similarity=0.468 Sum_probs=20.9
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHhc
Q psy1502 366 PKEKIGIVGRTGAGKSSLIAAIFR 389 (597)
Q Consensus 366 ~G~~vaIVG~SGsGKSTL~~LL~~ 389 (597)
+.=+|+++|++|+|||||++.+.+
T Consensus 6 ~~~~i~v~G~~~~GKssl~~~l~~ 29 (171)
T 1upt_A 6 REMRILILGLDGAGKTTILYRLQV 29 (171)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CccEEEEECCCCCCHHHHHHHHhc
Confidence 344799999999999999999975
No 377
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=95.18 E-value=0.008 Score=55.04 Aligned_cols=24 Identities=29% Similarity=0.455 Sum_probs=21.2
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHhc
Q psy1502 366 PKEKIGIVGRTGAGKSSLIAAIFR 389 (597)
Q Consensus 366 ~G~~vaIVG~SGsGKSTL~~LL~~ 389 (597)
+.=+|+++|++|+|||||++.+.+
T Consensus 17 ~~~~i~v~G~~~~GKssli~~l~~ 40 (183)
T 1moz_A 17 KELRILILGLDGAGKTTILYRLQI 40 (183)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTCC
T ss_pred CccEEEEECCCCCCHHHHHHHHhc
Confidence 455899999999999999999974
No 378
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=95.17 E-value=0.009 Score=56.00 Aligned_cols=22 Identities=41% Similarity=0.619 Sum_probs=20.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhcc
Q psy1502 369 KIGIVGRTGAGKSSLIAAIFRL 390 (597)
Q Consensus 369 ~vaIVG~SGsGKSTL~~LL~~l 390 (597)
+|++||++|+|||||++.+.+.
T Consensus 25 ki~vvG~~~vGKSsLi~~l~~~ 46 (195)
T 3cbq_A 25 KVMLVGESGVGKSTLAGTFGGL 46 (195)
T ss_dssp EEEEECSTTSSHHHHHHHTCCE
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 7899999999999999999753
No 379
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=95.17 E-value=0.0094 Score=54.34 Aligned_cols=21 Identities=33% Similarity=0.613 Sum_probs=19.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q psy1502 369 KIGIVGRTGAGKSSLIAAIFR 389 (597)
Q Consensus 369 ~vaIVG~SGsGKSTL~~LL~~ 389 (597)
+|+++|++|+|||||++.+.+
T Consensus 12 ~i~v~G~~~~GKssli~~l~~ 32 (180)
T 2g6b_A 12 KVMLVGDSGVGKTCLLVRFKD 32 (180)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHh
Confidence 689999999999999999985
No 380
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=95.16 E-value=4.8 Score=44.16 Aligned_cols=52 Identities=12% Similarity=-0.028 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhhcccChhHHHHHHHHH
Q psy1502 74 VGLFVAGISRSTAFYSACMRCSKGIHKKMFEAVVYSPLAFFSTNPSGRILNRFSKD 129 (597)
Q Consensus 74 i~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~~f~~~~sG~l~~rit~D 129 (597)
++..++..+..+...+...++..++..++-.++.+ ...+.+.+..-++=+.|
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~----~l~~~~~~~~~~~~~g~ 123 (582)
T 3b60_A 72 IGLMILRGITSYISSYCISWVSGKVVMTMRRRLFG----HMMGMPVAFFDKQSTGT 123 (582)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHTCCSTHHHHSCHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHcCCHHHHCCCChhH
Confidence 33444555555566666777777777777777643 34455665555443333
No 381
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=95.13 E-value=0.0096 Score=58.52 Aligned_cols=23 Identities=43% Similarity=0.601 Sum_probs=20.9
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcc
Q psy1502 368 EKIGIVGRTGAGKSSLIAAIFRL 390 (597)
Q Consensus 368 ~~vaIVG~SGsGKSTL~~LL~~l 390 (597)
-+|+|+|++|+|||||++.|++-
T Consensus 23 ~~I~lvG~~g~GKStl~n~l~~~ 45 (260)
T 2xtp_A 23 LRIILVGKTGTGKSAAGNSILRK 45 (260)
T ss_dssp EEEEEEECTTSCHHHHHHHHHTS
T ss_pred eEEEEECCCCCCHHHHHHHHhCC
Confidence 47999999999999999999874
No 382
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=95.11 E-value=0.01 Score=56.69 Aligned_cols=26 Identities=23% Similarity=0.346 Sum_probs=22.6
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHhccc
Q psy1502 366 PKEKIGIVGRTGAGKSSLIAAIFRLA 391 (597)
Q Consensus 366 ~G~~vaIVG~SGsGKSTL~~LL~~l~ 391 (597)
+|-.|.|+|++||||||+.+.|...+
T Consensus 4 ~~~~I~l~G~~GsGKsT~a~~La~~l 29 (217)
T 3be4_A 4 KKHNLILIGAPGSGKGTQCEFIKKEY 29 (217)
T ss_dssp GCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHh
Confidence 46689999999999999999998643
No 383
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=95.11 E-value=0.0099 Score=54.96 Aligned_cols=23 Identities=26% Similarity=0.275 Sum_probs=20.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhccc
Q psy1502 369 KIGIVGRTGAGKSSLIAAIFRLA 391 (597)
Q Consensus 369 ~vaIVG~SGsGKSTL~~LL~~l~ 391 (597)
+|+++|++|+|||||++.+.+-+
T Consensus 16 ki~vvG~~~~GKssL~~~l~~~~ 38 (198)
T 3t1o_A 16 KIVYYGPGLSGKTTNLKWIYSKV 38 (198)
T ss_dssp EEEEECSTTSSHHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHHhhc
Confidence 68999999999999999998754
No 384
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=95.09 E-value=0.01 Score=54.86 Aligned_cols=21 Identities=38% Similarity=0.661 Sum_probs=19.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q psy1502 369 KIGIVGRTGAGKSSLIAAIFR 389 (597)
Q Consensus 369 ~vaIVG~SGsGKSTL~~LL~~ 389 (597)
+|+++|++|+|||||++.|.+
T Consensus 23 ki~vvG~~~~GKSsli~~l~~ 43 (190)
T 3con_A 23 KLVVVGAGGVGKSALTIQLIQ 43 (190)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHc
Confidence 689999999999999999985
No 385
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=95.08 E-value=0.01 Score=60.10 Aligned_cols=22 Identities=32% Similarity=0.650 Sum_probs=20.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhcc
Q psy1502 369 KIGIVGRTGAGKSSLIAAIFRL 390 (597)
Q Consensus 369 ~vaIVG~SGsGKSTL~~LL~~l 390 (597)
+|+|||++|+|||||++.|+|-
T Consensus 9 ~V~ivG~~nvGKSTLln~l~g~ 30 (301)
T 1wf3_A 9 FVAIVGKPNVGKSTLLNNLLGV 30 (301)
T ss_dssp EEEEECSTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6999999999999999999974
No 386
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=95.08 E-value=0.01 Score=53.84 Aligned_cols=21 Identities=38% Similarity=0.550 Sum_probs=19.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q psy1502 369 KIGIVGRTGAGKSSLIAAIFR 389 (597)
Q Consensus 369 ~vaIVG~SGsGKSTL~~LL~~ 389 (597)
+++++|++|+|||||++.+.+
T Consensus 17 ~i~v~G~~~~GKSsli~~l~~ 37 (179)
T 1z0f_A 17 KYIIIGDMGVGKSCLLHQFTE 37 (179)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 689999999999999999986
No 387
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=95.07 E-value=0.01 Score=58.53 Aligned_cols=22 Identities=23% Similarity=0.437 Sum_probs=20.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhcc
Q psy1502 369 KIGIVGRTGAGKSSLIAAIFRL 390 (597)
Q Consensus 369 ~vaIVG~SGsGKSTL~~LL~~l 390 (597)
+|+++|.+|||||||++.|.|-
T Consensus 3 kI~lvG~~n~GKSTL~n~L~g~ 24 (256)
T 3iby_A 3 HALLIGNPNCGKTTLFNALTNA 24 (256)
T ss_dssp EEEEEESTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHCC
Confidence 7999999999999999999985
No 388
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=95.07 E-value=0.065 Score=65.81 Aligned_cols=28 Identities=21% Similarity=0.338 Sum_probs=25.8
Q ss_pred EcCCcEEEEEcCCCCCHHHHHHHHhccc
Q psy1502 364 IHPKEKIGIVGRTGAGKSSLIAAIFRLA 391 (597)
Q Consensus 364 I~~G~~vaIVG~SGsGKSTL~~LL~~l~ 391 (597)
+++|+.+.|.||+|+|||||+.-++.-.
T Consensus 729 l~~G~lVlI~G~PG~GKTtLal~lA~~a 756 (1706)
T 3cmw_A 729 LPMGRIVEIYGPESSGKTTLTLQVIAAA 756 (1706)
T ss_dssp EETTSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred cCCCceEEEECCCCCCcHHHHHHHHHHH
Confidence 8999999999999999999999887643
No 389
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=95.06 E-value=0.01 Score=54.10 Aligned_cols=21 Identities=43% Similarity=0.729 Sum_probs=19.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q psy1502 369 KIGIVGRTGAGKSSLIAAIFR 389 (597)
Q Consensus 369 ~vaIVG~SGsGKSTL~~LL~~ 389 (597)
+|+++|++|+|||||++.+.+
T Consensus 14 ki~v~G~~~~GKSsli~~l~~ 34 (181)
T 2efe_B 14 KLVLLGDVGAGKSSLVLRFVK 34 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHc
Confidence 689999999999999999986
No 390
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=95.03 E-value=0.0099 Score=57.04 Aligned_cols=31 Identities=23% Similarity=0.192 Sum_probs=25.7
Q ss_pred cCCcEEEEEcCCCCCHHHHHHHHhccccCCc
Q psy1502 365 HPKEKIGIVGRTGAGKSSLIAAIFRLAEVEG 395 (597)
Q Consensus 365 ~~G~~vaIVG~SGsGKSTL~~LL~~l~~~~G 395 (597)
.+|..|.|.|++||||||+++.|...+...|
T Consensus 4 m~g~~i~~eG~~gsGKsT~~~~l~~~l~~~~ 34 (213)
T 4edh_A 4 MTGLFVTLEGPEGAGKSTNRDYLAERLRERG 34 (213)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHHHTTT
T ss_pred CCceEEEEEcCCCCCHHHHHHHHHHHHHHcC
Confidence 4689999999999999999999987554444
No 391
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=95.03 E-value=0.011 Score=54.12 Aligned_cols=21 Identities=38% Similarity=0.566 Sum_probs=19.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q psy1502 369 KIGIVGRTGAGKSSLIAAIFR 389 (597)
Q Consensus 369 ~vaIVG~SGsGKSTL~~LL~~ 389 (597)
+|+++|++|+|||||++.+.+
T Consensus 20 ki~v~G~~~~GKSsli~~l~~ 40 (187)
T 2a9k_A 20 KVIMVGSGGVGKSALTLQFMY 40 (187)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhh
Confidence 689999999999999999985
No 392
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=95.02 E-value=5.4 Score=43.95 Aligned_cols=61 Identities=8% Similarity=0.016 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhhcccChhHHHHHHHHH
Q psy1502 65 YIGIYFSLIVGLFVAGISRSTAFYSACMRCSKGIHKKMFEAVVYSPLAFFSTNPSGRILNRFSKD 129 (597)
Q Consensus 65 ~i~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~~f~~~~sG~l~~rit~D 129 (597)
.+..+++++++..++..+..+...+...++..++..++-..+. ....+.+.+..-++=+.|
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~----~~ll~~~~~~~~~~~~G~ 135 (598)
T 3qf4_B 75 LLPRYMLILGTIYALTSLLFWLQGKIMLTLSQDVVFRLRKELF----EKLQRVPVGFFDRTPHGD 135 (598)
T ss_dssp GHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHSCTHHHHHSCHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHCCCHHHHcCCCHHH
Confidence 3444555555555666666666667777777777777777763 334455665555443333
No 393
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=95.01 E-value=0.011 Score=54.29 Aligned_cols=21 Identities=33% Similarity=0.651 Sum_probs=19.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q psy1502 369 KIGIVGRTGAGKSSLIAAIFR 389 (597)
Q Consensus 369 ~vaIVG~SGsGKSTL~~LL~~ 389 (597)
+|+++|++|+|||||++.+.+
T Consensus 12 ki~v~G~~~~GKSsli~~l~~ 32 (186)
T 2bme_A 12 KFLVIGNAGTGKSCLLHQFIE 32 (186)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 689999999999999999975
No 394
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=94.96 E-value=0.012 Score=54.53 Aligned_cols=21 Identities=24% Similarity=0.453 Sum_probs=19.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q psy1502 369 KIGIVGRTGAGKSSLIAAIFR 389 (597)
Q Consensus 369 ~vaIVG~SGsGKSTL~~LL~~ 389 (597)
+|+++|++|+|||||++.+.+
T Consensus 24 ki~vvG~~~~GKSsli~~l~~ 44 (189)
T 2gf9_A 24 KLLLIGNSSVGKTSFLFRYAD 44 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 689999999999999999986
No 395
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=94.95 E-value=0.012 Score=53.97 Aligned_cols=21 Identities=43% Similarity=0.732 Sum_probs=19.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q psy1502 369 KIGIVGRTGAGKSSLIAAIFR 389 (597)
Q Consensus 369 ~vaIVG~SGsGKSTL~~LL~~ 389 (597)
+|+++|++|+|||||++.+.+
T Consensus 20 ki~v~G~~~~GKSsl~~~l~~ 40 (183)
T 3kkq_A 20 KLVVVGDGGVGKSALTIQFFQ 40 (183)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 679999999999999999985
No 396
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=94.95 E-value=0.012 Score=56.09 Aligned_cols=22 Identities=27% Similarity=0.345 Sum_probs=19.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhcc
Q psy1502 369 KIGIVGRTGAGKSSLIAAIFRL 390 (597)
Q Consensus 369 ~vaIVG~SGsGKSTL~~LL~~l 390 (597)
+|+|.|++||||||+++.|...
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~ 23 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEK 23 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999863
No 397
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=94.94 E-value=0.011 Score=54.84 Aligned_cols=21 Identities=38% Similarity=0.746 Sum_probs=19.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q psy1502 369 KIGIVGRTGAGKSSLIAAIFR 389 (597)
Q Consensus 369 ~vaIVG~SGsGKSTL~~LL~~ 389 (597)
+|+++|++|+|||||++.+.+
T Consensus 25 ki~vvG~~~~GKSsli~~l~~ 45 (192)
T 2fg5_A 25 KVCLLGDTGVGKSSIVCRFVQ 45 (192)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHhc
Confidence 689999999999999999985
No 398
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=94.93 E-value=0.012 Score=55.05 Aligned_cols=21 Identities=38% Similarity=0.566 Sum_probs=19.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q psy1502 369 KIGIVGRTGAGKSSLIAAIFR 389 (597)
Q Consensus 369 ~vaIVG~SGsGKSTL~~LL~~ 389 (597)
+|+|+|++|+|||||++.+.+
T Consensus 16 ki~v~G~~~~GKSsli~~l~~ 36 (206)
T 2bov_A 16 KVIMVGSGGVGKSALTLQFMY 36 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 689999999999999999985
No 399
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=94.92 E-value=0.013 Score=53.88 Aligned_cols=25 Identities=16% Similarity=0.335 Sum_probs=21.6
Q ss_pred cCCcEEEEEcCCCCCHHHHHHHHhc
Q psy1502 365 HPKEKIGIVGRTGAGKSSLIAAIFR 389 (597)
Q Consensus 365 ~~G~~vaIVG~SGsGKSTL~~LL~~ 389 (597)
++.=+|+++|++|+|||||++.+.+
T Consensus 16 ~~~~~i~v~G~~~~GKssl~~~l~~ 40 (186)
T 1ksh_A 16 ERELRLLMLGLDNAGKTTILKKFNG 40 (186)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHTT
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhc
Confidence 4556899999999999999999986
No 400
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=94.92 E-value=0.012 Score=54.72 Aligned_cols=22 Identities=32% Similarity=0.575 Sum_probs=20.2
Q ss_pred cEEEEEcCCCCCHHHHHHHHhc
Q psy1502 368 EKIGIVGRTGAGKSSLIAAIFR 389 (597)
Q Consensus 368 ~~vaIVG~SGsGKSTL~~LL~~ 389 (597)
=+|+++|++|+|||||++.+.+
T Consensus 9 ~ki~vvG~~~~GKSsli~~l~~ 30 (199)
T 2gf0_A 9 YRVVVFGAGGVGKSSLVLRFVK 30 (199)
T ss_dssp EEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHHc
Confidence 3799999999999999999986
No 401
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=94.91 E-value=0.012 Score=54.96 Aligned_cols=21 Identities=29% Similarity=0.563 Sum_probs=19.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q psy1502 369 KIGIVGRTGAGKSSLIAAIFR 389 (597)
Q Consensus 369 ~vaIVG~SGsGKSTL~~LL~~ 389 (597)
+|+|||++|+|||||++.+.+
T Consensus 8 kv~lvG~~~vGKSsL~~~~~~ 28 (192)
T 2cjw_A 8 RVVLIGEQGVGKSTLANIFAG 28 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 699999999999999999985
No 402
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=94.91 E-value=0.012 Score=55.13 Aligned_cols=21 Identities=38% Similarity=0.656 Sum_probs=19.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q psy1502 369 KIGIVGRTGAGKSSLIAAIFR 389 (597)
Q Consensus 369 ~vaIVG~SGsGKSTL~~LL~~ 389 (597)
+|+|+|++|+|||||++.+.+
T Consensus 10 ki~v~G~~~~GKSsli~~l~~ 30 (207)
T 1vg8_A 10 KVIILGDSGVGKTSLMNQYVN 30 (207)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHc
Confidence 689999999999999999986
No 403
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=94.90 E-value=0.012 Score=54.20 Aligned_cols=21 Identities=33% Similarity=0.597 Sum_probs=19.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q psy1502 369 KIGIVGRTGAGKSSLIAAIFR 389 (597)
Q Consensus 369 ~vaIVG~SGsGKSTL~~LL~~ 389 (597)
+++++|++|+|||||++.+.+
T Consensus 9 ki~v~G~~~vGKSsli~~l~~ 29 (184)
T 1m7b_A 9 KIVVVGDSQCGKTALLHVFAK 29 (184)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 689999999999999999985
No 404
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=94.88 E-value=0.013 Score=56.25 Aligned_cols=22 Identities=32% Similarity=0.483 Sum_probs=20.4
Q ss_pred cEEEEEcCCCCCHHHHHHHHhc
Q psy1502 368 EKIGIVGRTGAGKSSLIAAIFR 389 (597)
Q Consensus 368 ~~vaIVG~SGsGKSTL~~LL~~ 389 (597)
-+|+++|++|+|||||++.+.+
T Consensus 30 ~kI~vvG~~~vGKSsLin~l~~ 51 (228)
T 2qu8_A 30 KTIILSGAPNVGKSSFMNIVSR 51 (228)
T ss_dssp EEEEEECSTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 4799999999999999999986
No 405
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=94.88 E-value=0.012 Score=60.37 Aligned_cols=24 Identities=33% Similarity=0.333 Sum_probs=21.2
Q ss_pred cEEEEEcCCCCCHHHHHHHHhccc
Q psy1502 368 EKIGIVGRTGAGKSSLIAAIFRLA 391 (597)
Q Consensus 368 ~~vaIVG~SGsGKSTL~~LL~~l~ 391 (597)
..|+|+||||||||||...|..-+
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l 31 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKF 31 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHT
T ss_pred ceEEEECCCcCcHHHHHHHHHHHc
Confidence 479999999999999999998643
No 406
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=94.87 E-value=0.012 Score=55.06 Aligned_cols=23 Identities=30% Similarity=0.393 Sum_probs=20.7
Q ss_pred CcEEEEEcCCCCCHHHHHHHHhc
Q psy1502 367 KEKIGIVGRTGAGKSSLIAAIFR 389 (597)
Q Consensus 367 G~~vaIVG~SGsGKSTL~~LL~~ 389 (597)
.=+|+++|++|+|||||++.+.+
T Consensus 24 ~~ki~vvG~~~~GKSsli~~l~~ 46 (201)
T 3oes_A 24 YRKVVILGYRCVGKTSLAHQFVE 46 (201)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHH
T ss_pred cEEEEEECCCCcCHHHHHHHHHh
Confidence 34789999999999999999986
No 407
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=94.87 E-value=0.013 Score=54.45 Aligned_cols=21 Identities=33% Similarity=0.604 Sum_probs=19.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q psy1502 369 KIGIVGRTGAGKSSLIAAIFR 389 (597)
Q Consensus 369 ~vaIVG~SGsGKSTL~~LL~~ 389 (597)
+|+++|++|+|||||++.+.+
T Consensus 28 ki~vvG~~~~GKSsLi~~l~~ 48 (192)
T 2il1_A 28 QVIIIGSRGVGKTSLMERFTD 48 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 589999999999999999986
No 408
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=94.86 E-value=0.013 Score=59.54 Aligned_cols=23 Identities=30% Similarity=0.583 Sum_probs=21.2
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcc
Q psy1502 368 EKIGIVGRTGAGKSSLIAAIFRL 390 (597)
Q Consensus 368 ~~vaIVG~SGsGKSTL~~LL~~l 390 (597)
-+|||+|++|+|||||++.|.|-
T Consensus 11 g~v~ivG~~nvGKSTLin~l~g~ 33 (308)
T 3iev_A 11 GYVAIVGKPNVGKSTLLNNLLGT 33 (308)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCCcHHHHHHHHhCC
Confidence 57999999999999999999974
No 409
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=94.85 E-value=0.014 Score=54.64 Aligned_cols=21 Identities=33% Similarity=0.491 Sum_probs=19.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q psy1502 369 KIGIVGRTGAGKSSLIAAIFR 389 (597)
Q Consensus 369 ~vaIVG~SGsGKSTL~~LL~~ 389 (597)
+|+++|++|+|||||++.+.+
T Consensus 10 ki~v~G~~~~GKSsli~~l~~ 30 (203)
T 1zbd_A 10 KILIIGNSSVGKTSFLFRYAD 30 (203)
T ss_dssp EEEEECSTTSSHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 689999999999999999986
No 410
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=94.85 E-value=0.013 Score=54.28 Aligned_cols=21 Identities=33% Similarity=0.596 Sum_probs=19.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q psy1502 369 KIGIVGRTGAGKSSLIAAIFR 389 (597)
Q Consensus 369 ~vaIVG~SGsGKSTL~~LL~~ 389 (597)
+|+++|++|+|||||++.+.+
T Consensus 18 ki~v~G~~~~GKSsli~~l~~ 38 (196)
T 3tkl_A 18 KLLLIGDSGVGKSCLLLRFAD 38 (196)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHc
Confidence 699999999999999999986
No 411
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=94.85 E-value=0.014 Score=59.30 Aligned_cols=25 Identities=24% Similarity=0.369 Sum_probs=21.6
Q ss_pred CcEEEEEcCCCCCHHHHHHHHhccc
Q psy1502 367 KEKIGIVGRTGAGKSSLIAAIFRLA 391 (597)
Q Consensus 367 G~~vaIVG~SGsGKSTL~~LL~~l~ 391 (597)
+..+.|+||||||||||+.-|+.-+
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~~ 27 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKRL 27 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHTT
T ss_pred CcEEEEECCCcCCHHHHHHHHHHhC
Confidence 4578999999999999999998643
No 412
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=94.84 E-value=0.013 Score=54.21 Aligned_cols=21 Identities=29% Similarity=0.458 Sum_probs=19.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q psy1502 369 KIGIVGRTGAGKSSLIAAIFR 389 (597)
Q Consensus 369 ~vaIVG~SGsGKSTL~~LL~~ 389 (597)
+|+++|++|+|||||++.+.+
T Consensus 22 ki~v~G~~~~GKSsli~~l~~ 42 (189)
T 1z06_A 22 KIIVIGDSNVGKTCLTYRFCA 42 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 589999999999999999975
No 413
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=94.83 E-value=0.0072 Score=57.53 Aligned_cols=24 Identities=33% Similarity=0.559 Sum_probs=21.5
Q ss_pred CcEEEEEcCCCCCHHHHHHHHhcc
Q psy1502 367 KEKIGIVGRTGAGKSSLIAAIFRL 390 (597)
Q Consensus 367 G~~vaIVG~SGsGKSTL~~LL~~l 390 (597)
.-+|+++|++|+|||||++.|++-
T Consensus 29 ~~~i~v~G~~~~GKSslin~l~~~ 52 (223)
T 4dhe_A 29 QPEIAFAGRSNAGKSTAINVLCNQ 52 (223)
T ss_dssp SCEEEEEESCHHHHHHHHHHHTTC
T ss_pred CCEEEEEcCCCCCHHHHHHHHhCC
Confidence 457999999999999999999874
No 414
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=94.82 E-value=0.013 Score=55.57 Aligned_cols=23 Identities=30% Similarity=0.385 Sum_probs=20.7
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcc
Q psy1502 368 EKIGIVGRTGAGKSSLIAAIFRL 390 (597)
Q Consensus 368 ~~vaIVG~SGsGKSTL~~LL~~l 390 (597)
-+++++|++|+|||||++.|.+-
T Consensus 13 ~~i~~~G~~g~GKTsl~~~l~~~ 35 (218)
T 1nrj_B 13 PSIIIAGPQNSGKTSLLTLLTTD 35 (218)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHS
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 47899999999999999999863
No 415
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=94.82 E-value=0.059 Score=54.23 Aligned_cols=42 Identities=17% Similarity=0.205 Sum_probs=30.1
Q ss_pred CCCEEEeecCCCCCCHHHHHHHHHHHHHhcCCcEEEEeccCch
Q psy1502 492 NNVILVLDEATANVDPKTDLLIQRTIRKKFADCTVLTIAHRLH 534 (597)
Q Consensus 492 ~p~ILILDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrls 534 (597)
++.++++||+- .++.+....+.+.+++...+..+|+++.+..
T Consensus 110 ~~~vliiDe~~-~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~ 151 (327)
T 1iqp_A 110 SFKIIFLDEAD-ALTQDAQQALRRTMEMFSSNVRFILSCNYSS 151 (327)
T ss_dssp SCEEEEEETGG-GSCHHHHHHHHHHHHHTTTTEEEEEEESCGG
T ss_pred CCeEEEEeCCC-cCCHHHHHHHHHHHHhcCCCCeEEEEeCCcc
Confidence 68899999974 4567777778888877555556666666554
No 416
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=94.82 E-value=0.013 Score=53.52 Aligned_cols=21 Identities=29% Similarity=0.422 Sum_probs=19.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q psy1502 369 KIGIVGRTGAGKSSLIAAIFR 389 (597)
Q Consensus 369 ~vaIVG~SGsGKSTL~~LL~~ 389 (597)
+|+++|++|+|||||++.+.+
T Consensus 7 ~i~~~G~~~~GKssl~~~l~~ 27 (186)
T 1mh1_A 7 KCVVVGDGAVGKTCLLISYTT 27 (186)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 689999999999999999874
No 417
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=94.82 E-value=0.035 Score=56.28 Aligned_cols=44 Identities=14% Similarity=0.351 Sum_probs=32.7
Q ss_pred CCCEEEeecCCCCCC-HHHHHHHHHHHHHhcCCcEEEEeccCchhH
Q psy1502 492 NNVILVLDEATANVD-PKTDLLIQRTIRKKFADCTVLTIAHRLHTI 536 (597)
Q Consensus 492 ~p~ILILDEaTSaLD-~~te~~I~~~l~~~~~~~TvI~IaHrlsti 536 (597)
+++++++||+-. +. .+....+.+.+++...+..+|+++++...+
T Consensus 105 ~~~vliiDEi~~-l~~~~~~~~L~~~le~~~~~~~iI~~~n~~~~l 149 (324)
T 3u61_B 105 RQKVIVIDEFDR-SGLAESQRHLRSFMEAYSSNCSIIITANNIDGI 149 (324)
T ss_dssp CEEEEEEESCCC-GGGHHHHHHHHHHHHHHGGGCEEEEEESSGGGS
T ss_pred CCeEEEEECCcc-cCcHHHHHHHHHHHHhCCCCcEEEEEeCCcccc
Confidence 789999999854 34 566667777777766667888888886643
No 418
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=94.81 E-value=0.011 Score=57.66 Aligned_cols=27 Identities=33% Similarity=0.393 Sum_probs=24.3
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHhcccc
Q psy1502 366 PKEKIGIVGRTGAGKSSLIAAIFRLAE 392 (597)
Q Consensus 366 ~G~~vaIVG~SGsGKSTL~~LL~~l~~ 392 (597)
+|..|.|.|++||||||+++.|...+.
T Consensus 26 ~~~~i~~eG~~GsGKsT~~~~l~~~l~ 52 (236)
T 3lv8_A 26 NAKFIVIEGLEGAGKSTAIQVVVETLQ 52 (236)
T ss_dssp CCCEEEEEESTTSCHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 689999999999999999999987553
No 419
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=94.80 E-value=0.013 Score=54.24 Aligned_cols=23 Identities=17% Similarity=0.283 Sum_probs=20.6
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcc
Q psy1502 368 EKIGIVGRTGAGKSSLIAAIFRL 390 (597)
Q Consensus 368 ~~vaIVG~SGsGKSTL~~LL~~l 390 (597)
=+|+++|++|+|||||++.+.+-
T Consensus 22 ~ki~v~G~~~~GKSsli~~l~~~ 44 (190)
T 2h57_A 22 VHVLCLGLDNSGKTTIINKLKPS 44 (190)
T ss_dssp EEEEEEECTTSSHHHHHHHTSCG
T ss_pred cEEEEECCCCCCHHHHHHHHhcC
Confidence 36899999999999999999863
No 420
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=94.80 E-value=0.013 Score=53.47 Aligned_cols=21 Identities=43% Similarity=0.583 Sum_probs=19.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q psy1502 369 KIGIVGRTGAGKSSLIAAIFR 389 (597)
Q Consensus 369 ~vaIVG~SGsGKSTL~~LL~~ 389 (597)
+|+++|++|+|||||++.+.+
T Consensus 8 ki~~~G~~~~GKSsli~~l~~ 28 (181)
T 3t5g_A 8 KIAILGYRSVGKSSLTIQFVE 28 (181)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHc
Confidence 789999999999999999983
No 421
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=94.79 E-value=0.014 Score=58.26 Aligned_cols=22 Identities=27% Similarity=0.605 Sum_probs=20.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhcc
Q psy1502 369 KIGIVGRTGAGKSSLIAAIFRL 390 (597)
Q Consensus 369 ~vaIVG~SGsGKSTL~~LL~~l 390 (597)
+|+++|++|||||||++.|.|-
T Consensus 5 ~I~lvG~~n~GKSTLin~l~g~ 26 (274)
T 3i8s_A 5 TIGLIGNPNSGKTTLFNQLTGS 26 (274)
T ss_dssp EEEEEECTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 7899999999999999999984
No 422
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=94.79 E-value=0.013 Score=54.26 Aligned_cols=21 Identities=29% Similarity=0.472 Sum_probs=19.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q psy1502 369 KIGIVGRTGAGKSSLIAAIFR 389 (597)
Q Consensus 369 ~vaIVG~SGsGKSTL~~LL~~ 389 (597)
+|+|+|++|+|||||++.+.+
T Consensus 25 ki~v~G~~~~GKSsli~~l~~ 45 (191)
T 3dz8_A 25 KLLIIGNSSVGKTSFLFRYAD 45 (191)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHhc
Confidence 689999999999999999986
No 423
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=94.75 E-value=0.015 Score=54.56 Aligned_cols=21 Identities=33% Similarity=0.643 Sum_probs=19.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q psy1502 369 KIGIVGRTGAGKSSLIAAIFR 389 (597)
Q Consensus 369 ~vaIVG~SGsGKSTL~~LL~~ 389 (597)
+|+++|++|+|||||++.+.+
T Consensus 27 ki~v~G~~~~GKSsLi~~l~~ 47 (200)
T 2o52_A 27 KFLVIGSAGTGKSCLLHQFIE 47 (200)
T ss_dssp EEEEEESTTSSHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHh
Confidence 689999999999999999985
No 424
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=94.74 E-value=0.02 Score=52.77 Aligned_cols=27 Identities=30% Similarity=0.363 Sum_probs=22.9
Q ss_pred EEEcCCcEEEEEcCCCCCHHHHHHHHh
Q psy1502 362 ITIHPKEKIGIVGRTGAGKSSLIAAIF 388 (597)
Q Consensus 362 l~I~~G~~vaIVG~SGsGKSTL~~LL~ 388 (597)
+---.|.-+.|.|+||+|||||+..|.
T Consensus 11 ~v~v~G~gvli~G~SGaGKStlal~L~ 37 (181)
T 3tqf_A 11 FLVIDKMGVLITGEANIGKSELSLALI 37 (181)
T ss_dssp EEEETTEEEEEEESSSSSHHHHHHHHH
T ss_pred EEEECCEEEEEEcCCCCCHHHHHHHHH
Confidence 334568899999999999999998775
No 425
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=94.73 E-value=0.014 Score=55.07 Aligned_cols=21 Identities=33% Similarity=0.661 Sum_probs=19.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q psy1502 369 KIGIVGRTGAGKSSLIAAIFR 389 (597)
Q Consensus 369 ~vaIVG~SGsGKSTL~~LL~~ 389 (597)
+|+++|++|+|||||++.+.+
T Consensus 28 ki~lvG~~~vGKSsLi~~l~~ 48 (201)
T 2ew1_A 28 KIVLIGNAGVGKTCLVRRFTQ 48 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHh
Confidence 689999999999999998875
No 426
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=94.72 E-value=0.015 Score=54.02 Aligned_cols=21 Identities=43% Similarity=0.581 Sum_probs=19.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q psy1502 369 KIGIVGRTGAGKSSLIAAIFR 389 (597)
Q Consensus 369 ~vaIVG~SGsGKSTL~~LL~~ 389 (597)
+|+++|++|+|||||++.+.+
T Consensus 23 ki~v~G~~~~GKSsli~~l~~ 43 (191)
T 2a5j_A 23 KYIIIGDTGVGKSCLLLQFTD 43 (191)
T ss_dssp EEEEESSTTSSHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHhc
Confidence 689999999999999999985
No 427
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=94.72 E-value=0.017 Score=52.70 Aligned_cols=24 Identities=25% Similarity=0.223 Sum_probs=21.0
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHhc
Q psy1502 366 PKEKIGIVGRTGAGKSSLIAAIFR 389 (597)
Q Consensus 366 ~G~~vaIVG~SGsGKSTL~~LL~~ 389 (597)
+.=+++++|++|+|||||++.+.+
T Consensus 7 ~~~ki~v~G~~~~GKssl~~~~~~ 30 (182)
T 3bwd_D 7 RFIKCVTVGDGAVGKTCLLISYTS 30 (182)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEEEECCCCCCHHHHHHHHhc
Confidence 345799999999999999999875
No 428
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=94.72 E-value=0.015 Score=55.97 Aligned_cols=23 Identities=26% Similarity=0.258 Sum_probs=20.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhccc
Q psy1502 369 KIGIVGRTGAGKSSLIAAIFRLA 391 (597)
Q Consensus 369 ~vaIVG~SGsGKSTL~~LL~~l~ 391 (597)
.+.|+|++||||||+++.|...+
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~l 24 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKY 24 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999997643
No 429
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=94.71 E-value=0.013 Score=55.88 Aligned_cols=24 Identities=25% Similarity=0.329 Sum_probs=21.5
Q ss_pred CcEEEEEcCCCCCHHHHHHHHhcc
Q psy1502 367 KEKIGIVGRTGAGKSSLIAAIFRL 390 (597)
Q Consensus 367 G~~vaIVG~SGsGKSTL~~LL~~l 390 (597)
+..++|+|++||||||+.+.|...
T Consensus 3 ~~~i~i~G~~gsGkst~~~~l~~~ 26 (219)
T 2h92_A 3 AINIALDGPAAAGKSTIAKRVASE 26 (219)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHh
Confidence 457999999999999999999874
No 430
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=94.70 E-value=0.014 Score=53.54 Aligned_cols=21 Identities=33% Similarity=0.460 Sum_probs=19.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q psy1502 369 KIGIVGRTGAGKSSLIAAIFR 389 (597)
Q Consensus 369 ~vaIVG~SGsGKSTL~~LL~~ 389 (597)
+|+++|++|+|||||++.+.+
T Consensus 23 ~i~v~G~~~~GKSsli~~l~~ 43 (181)
T 2h17_A 23 KVIIVGLDNAGKTTILYQFSM 43 (181)
T ss_dssp EEEEEEETTSSHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 689999999999999999986
No 431
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=94.69 E-value=0.016 Score=53.88 Aligned_cols=23 Identities=22% Similarity=0.408 Sum_probs=20.6
Q ss_pred CcEEEEEcCCCCCHHHHHHHHhc
Q psy1502 367 KEKIGIVGRTGAGKSSLIAAIFR 389 (597)
Q Consensus 367 G~~vaIVG~SGsGKSTL~~LL~~ 389 (597)
.-+|+++|++|+|||||++.+.+
T Consensus 17 ~~ki~v~G~~~~GKSsl~~~l~~ 39 (199)
T 4bas_A 17 KLQVVMCGLDNSGKTTIINQVKP 39 (199)
T ss_dssp EEEEEEECCTTSCHHHHHHHHSC
T ss_pred CcEEEEECCCCCCHHHHHHHHhc
Confidence 34689999999999999999986
No 432
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=94.68 E-value=0.014 Score=54.91 Aligned_cols=23 Identities=26% Similarity=0.547 Sum_probs=20.7
Q ss_pred CcEEEEEcCCCCCHHHHHHHHhc
Q psy1502 367 KEKIGIVGRTGAGKSSLIAAIFR 389 (597)
Q Consensus 367 G~~vaIVG~SGsGKSTL~~LL~~ 389 (597)
.-+|+++|++|+|||||++.+.+
T Consensus 25 ~~ki~vvG~~~~GKSsli~~l~~ 47 (207)
T 2fv8_A 25 RKKLVVVGDGACGKTCLLIVFSK 47 (207)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHH
T ss_pred CcEEEEECcCCCCHHHHHHHHhc
Confidence 34799999999999999999986
No 433
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=94.68 E-value=0.016 Score=53.45 Aligned_cols=24 Identities=29% Similarity=0.422 Sum_probs=21.1
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHhc
Q psy1502 366 PKEKIGIVGRTGAGKSSLIAAIFR 389 (597)
Q Consensus 366 ~G~~vaIVG~SGsGKSTL~~LL~~ 389 (597)
+.=+|+++|++|+|||||++.+.+
T Consensus 15 ~~~~i~v~G~~~~GKssl~~~l~~ 38 (187)
T 1zj6_A 15 QEHKVIIVGLDNAGKTTILYQFSM 38 (187)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHHT
T ss_pred CccEEEEECCCCCCHHHHHHHHhc
Confidence 345799999999999999999984
No 434
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=94.67 E-value=0.018 Score=55.73 Aligned_cols=26 Identities=19% Similarity=0.277 Sum_probs=22.5
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHhccc
Q psy1502 366 PKEKIGIVGRTGAGKSSLIAAIFRLA 391 (597)
Q Consensus 366 ~G~~vaIVG~SGsGKSTL~~LL~~l~ 391 (597)
.+..|.|+|++||||||+++.|..-+
T Consensus 15 ~~~~I~l~G~~GsGKsT~a~~La~~l 40 (233)
T 1ak2_A 15 KGVRAVLLGPPGAGKGTQAPKLAKNF 40 (233)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 45689999999999999999998643
No 435
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=94.67 E-value=0.015 Score=54.63 Aligned_cols=21 Identities=33% Similarity=0.597 Sum_probs=19.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q psy1502 369 KIGIVGRTGAGKSSLIAAIFR 389 (597)
Q Consensus 369 ~vaIVG~SGsGKSTL~~LL~~ 389 (597)
+|+++|++|+|||||++.+.+
T Consensus 10 ki~v~G~~~~GKSsli~~l~~ 30 (206)
T 2bcg_Y 10 KLLLIGNSGVGKSCLLLRFSD 30 (206)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 689999999999999999985
No 436
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=94.66 E-value=0.013 Score=56.29 Aligned_cols=30 Identities=30% Similarity=0.339 Sum_probs=25.4
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHhccccCCc
Q psy1502 366 PKEKIGIVGRTGAGKSSLIAAIFRLAEVEG 395 (597)
Q Consensus 366 ~G~~vaIVG~SGsGKSTL~~LL~~l~~~~G 395 (597)
+|..|.+.|++||||||+++.|.......|
T Consensus 2 ~g~~i~~eG~~gsGKsT~~~~l~~~l~~~~ 31 (213)
T 4tmk_A 2 RSKYIVIEGLEGAGKTTARNVVVETLEQLG 31 (213)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHHHHHHTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcC
Confidence 588999999999999999999987554334
No 437
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=94.64 E-value=0.016 Score=53.88 Aligned_cols=21 Identities=38% Similarity=0.580 Sum_probs=19.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q psy1502 369 KIGIVGRTGAGKSSLIAAIFR 389 (597)
Q Consensus 369 ~vaIVG~SGsGKSTL~~LL~~ 389 (597)
+|+++|++|+|||||++.+.+
T Consensus 25 ki~~vG~~~~GKSsl~~~l~~ 45 (194)
T 3reg_A 25 KIVVVGDGAVGKTCLLLAFSK 45 (194)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHhc
Confidence 699999999999999999986
No 438
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=94.63 E-value=0.016 Score=57.26 Aligned_cols=22 Identities=27% Similarity=0.537 Sum_probs=20.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhcc
Q psy1502 369 KIGIVGRTGAGKSSLIAAIFRL 390 (597)
Q Consensus 369 ~vaIVG~SGsGKSTL~~LL~~l 390 (597)
+|+++|++|+|||||++.|++-
T Consensus 38 ~I~lvG~~g~GKSSLin~l~~~ 59 (262)
T 3def_A 38 TVLVLGKGGVGKSSTVNSLIGE 59 (262)
T ss_dssp EEEEEECTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5799999999999999999973
No 439
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=94.62 E-value=0.016 Score=54.57 Aligned_cols=23 Identities=35% Similarity=0.566 Sum_probs=20.6
Q ss_pred CcEEEEEcCCCCCHHHHHHHHhc
Q psy1502 367 KEKIGIVGRTGAGKSSLIAAIFR 389 (597)
Q Consensus 367 G~~vaIVG~SGsGKSTL~~LL~~ 389 (597)
.=+|+++|++|+|||||++.+.+
T Consensus 20 ~~~i~v~G~~~~GKSsli~~l~~ 42 (213)
T 3cph_A 20 IMKILLIGDSGVGKSCLLVRFVE 42 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHh
Confidence 34799999999999999999985
No 440
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=94.61 E-value=0.016 Score=57.44 Aligned_cols=21 Identities=38% Similarity=0.637 Sum_probs=19.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q psy1502 369 KIGIVGRTGAGKSSLIAAIFR 389 (597)
Q Consensus 369 ~vaIVG~SGsGKSTL~~LL~~ 389 (597)
+++++|++|+|||||++.|++
T Consensus 41 ~I~vvG~~g~GKSSLin~l~~ 61 (270)
T 1h65_A 41 TILVMGKGGVGKSSTVNSIIG 61 (270)
T ss_dssp EEEEEESTTSSHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 689999999999999999987
No 441
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=94.60 E-value=0.016 Score=57.13 Aligned_cols=22 Identities=32% Similarity=0.510 Sum_probs=20.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhcc
Q psy1502 369 KIGIVGRTGAGKSSLIAAIFRL 390 (597)
Q Consensus 369 ~vaIVG~SGsGKSTL~~LL~~l 390 (597)
+|+++|++|+|||||++.|.|-
T Consensus 7 kI~lvG~~nvGKTsL~n~l~g~ 28 (258)
T 3a1s_A 7 KVALAGCPNVGKTSLFNALTGT 28 (258)
T ss_dssp EEEEECCTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHCC
Confidence 6999999999999999999974
No 442
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=94.59 E-value=0.021 Score=54.90 Aligned_cols=28 Identities=18% Similarity=0.233 Sum_probs=24.9
Q ss_pred cCCcEEEEEcCCCCCHHHHHHHHhcccc
Q psy1502 365 HPKEKIGIVGRTGAGKSSLIAAIFRLAE 392 (597)
Q Consensus 365 ~~G~~vaIVG~SGsGKSTL~~LL~~l~~ 392 (597)
++|..|.+-|++||||||+++.|...+.
T Consensus 3 ~~g~~i~~eG~~g~GKst~~~~l~~~l~ 30 (216)
T 3tmk_A 3 GRGKLILIEGLDRTGKTTQCNILYKKLQ 30 (216)
T ss_dssp CCCCEEEEEECSSSSHHHHHHHHHHHHC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 4699999999999999999999987554
No 443
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=94.59 E-value=0.016 Score=53.55 Aligned_cols=21 Identities=24% Similarity=0.474 Sum_probs=19.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q psy1502 369 KIGIVGRTGAGKSSLIAAIFR 389 (597)
Q Consensus 369 ~vaIVG~SGsGKSTL~~LL~~ 389 (597)
+|+++|++|+|||||++.+.+
T Consensus 24 ki~v~G~~~~GKSsli~~l~~ 44 (188)
T 1zd9_A 24 ELTLVGLQYSGKTTFVNVIAS 44 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 689999999999999999985
No 444
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=94.58 E-value=0.016 Score=53.93 Aligned_cols=23 Identities=39% Similarity=0.739 Sum_probs=20.5
Q ss_pred CcEEEEEcCCCCCHHHHHHHHhc
Q psy1502 367 KEKIGIVGRTGAGKSSLIAAIFR 389 (597)
Q Consensus 367 G~~vaIVG~SGsGKSTL~~LL~~ 389 (597)
.=+|+++|++|+|||||++.+.+
T Consensus 28 ~~ki~v~G~~~vGKSsli~~l~~ 50 (196)
T 2atv_A 28 EVKLAIFGRAGVGKSALVVRFLT 50 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHh
Confidence 34799999999999999999985
No 445
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=94.58 E-value=0.016 Score=54.12 Aligned_cols=24 Identities=29% Similarity=0.459 Sum_probs=20.7
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHhc
Q psy1502 366 PKEKIGIVGRTGAGKSSLIAAIFR 389 (597)
Q Consensus 366 ~G~~vaIVG~SGsGKSTL~~LL~~ 389 (597)
+.=+|+++|++|+|||||++.+.+
T Consensus 27 ~~~ki~v~G~~~~GKSsli~~l~~ 50 (199)
T 2p5s_A 27 KAYKIVLAGDAAVGKSSFLMRLCK 50 (199)
T ss_dssp -CEEEEEESSTTSSHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHh
Confidence 345789999999999999999985
No 446
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=94.58 E-value=0.016 Score=53.43 Aligned_cols=21 Identities=48% Similarity=0.680 Sum_probs=19.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q psy1502 369 KIGIVGRTGAGKSSLIAAIFR 389 (597)
Q Consensus 369 ~vaIVG~SGsGKSTL~~LL~~ 389 (597)
+|+++|++|+|||||++.+.+
T Consensus 17 ~i~v~G~~~~GKssli~~l~~ 37 (195)
T 1x3s_A 17 KILIIGESGVGKSSLLLRFTD 37 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 689999999999999999985
No 447
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=94.57 E-value=0.016 Score=58.57 Aligned_cols=23 Identities=35% Similarity=0.518 Sum_probs=21.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhccc
Q psy1502 369 KIGIVGRTGAGKSSLIAAIFRLA 391 (597)
Q Consensus 369 ~vaIVG~SGsGKSTL~~LL~~l~ 391 (597)
.|+|||++|+|||||++.|+|..
T Consensus 26 ~I~vvG~~~~GKSTlln~l~g~~ 48 (315)
T 1jwy_B 26 QIVVVGSQSSGKSSVLENIVGRD 48 (315)
T ss_dssp EEEEEECSSSSHHHHHHHHHTSC
T ss_pred eEEEEcCCCCCHHHHHHHHHCCC
Confidence 69999999999999999999853
No 448
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=94.56 E-value=0.017 Score=54.78 Aligned_cols=21 Identities=38% Similarity=0.629 Sum_probs=19.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q psy1502 369 KIGIVGRTGAGKSSLIAAIFR 389 (597)
Q Consensus 369 ~vaIVG~SGsGKSTL~~LL~~ 389 (597)
+|+++|++|+|||||++.+.+
T Consensus 36 ki~vvG~~~vGKSsli~~l~~ 56 (214)
T 2j1l_A 36 KVVLVGDGGCGKTSLLMVFAD 56 (214)
T ss_dssp EEEEEECTTSSHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHc
Confidence 699999999999999999986
No 449
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=94.56 E-value=0.016 Score=56.22 Aligned_cols=27 Identities=22% Similarity=0.208 Sum_probs=21.5
Q ss_pred cCCcEEEEEcCCCCCHHHHHHHHhccc
Q psy1502 365 HPKEKIGIVGRTGAGKSSLIAAIFRLA 391 (597)
Q Consensus 365 ~~G~~vaIVG~SGsGKSTL~~LL~~l~ 391 (597)
.+|..|.|.|++||||||+++.|...+
T Consensus 23 ~~g~~I~~eG~~GsGKsT~~~~l~~~l 49 (227)
T 3v9p_A 23 ARGKFITFEGIDGAGKTTHLQWFCDRL 49 (227)
T ss_dssp CCCCEEEEECCC---CHHHHHHHHHHH
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 579999999999999999999998754
No 450
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=94.54 E-value=0.019 Score=52.52 Aligned_cols=27 Identities=19% Similarity=0.460 Sum_probs=23.1
Q ss_pred cCCcEEEEEcCCCCCHHHHHHHHhccc
Q psy1502 365 HPKEKIGIVGRTGAGKSSLIAAIFRLA 391 (597)
Q Consensus 365 ~~G~~vaIVG~SGsGKSTL~~LL~~l~ 391 (597)
..+..+.|+||+|+|||||++.+....
T Consensus 41 ~~~~~~ll~G~~G~GKT~l~~~~~~~~ 67 (195)
T 1jbk_A 41 RTKNNPVLIGEPGVGKTAIVEGLAQRI 67 (195)
T ss_dssp SSSCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCCceEEECCCCCCHHHHHHHHHHHH
Confidence 446779999999999999999998743
No 451
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=94.53 E-value=0.017 Score=57.85 Aligned_cols=23 Identities=35% Similarity=0.534 Sum_probs=21.1
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcc
Q psy1502 368 EKIGIVGRTGAGKSSLIAAIFRL 390 (597)
Q Consensus 368 ~~vaIVG~SGsGKSTL~~LL~~l 390 (597)
=+|+|||++|+|||||++.|.|-
T Consensus 27 ~~i~vvG~~~~GKSSLln~l~g~ 49 (299)
T 2aka_B 27 PQIAVVGGQSAGKSSVLENFVGR 49 (299)
T ss_dssp CEEEEEEBTTSCHHHHHHHHHTS
T ss_pred CeEEEEeCCCCCHHHHHHHHHCC
Confidence 37999999999999999999974
No 452
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=94.51 E-value=0.017 Score=54.99 Aligned_cols=23 Identities=30% Similarity=0.510 Sum_probs=20.5
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcc
Q psy1502 368 EKIGIVGRTGAGKSSLIAAIFRL 390 (597)
Q Consensus 368 ~~vaIVG~SGsGKSTL~~LL~~l 390 (597)
-.++|+|++|+|||||++-|++-
T Consensus 31 ~~i~i~G~~g~GKTTl~~~l~~~ 53 (221)
T 2wsm_A 31 VAVNIMGAIGSGKTLLIERTIER 53 (221)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHH
Confidence 47999999999999999988863
No 453
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=94.49 E-value=0.017 Score=54.57 Aligned_cols=22 Identities=32% Similarity=0.510 Sum_probs=20.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhcc
Q psy1502 369 KIGIVGRTGAGKSSLIAAIFRL 390 (597)
Q Consensus 369 ~vaIVG~SGsGKSTL~~LL~~l 390 (597)
+|+++|++|+|||||++.+.+-
T Consensus 30 ki~vvG~~~vGKSsLi~~l~~~ 51 (205)
T 1gwn_A 30 KIVVVGDSQCGKTALLHVFAKD 51 (205)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999999863
No 454
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=94.48 E-value=7.1 Score=42.89 Aligned_cols=49 Identities=6% Similarity=0.028 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhhcccChhHHHH
Q psy1502 72 LIVGLFVAGISRSTAFYSACMRCSKGIHKKMFEAVVYSPLAFFSTNPSGRILN 124 (597)
Q Consensus 72 ~~i~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~~f~~~~sG~l~~ 124 (597)
++++..++..+..+...+...++..++..++-.++.+ ...+.+.+..-+
T Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~----~l~~~~~~~~~~ 115 (595)
T 2yl4_A 67 GLSAVFLCGAAANAIRVYLMQTSGQRIVNRLRTSLFS----SILRQEVAFFDK 115 (595)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHSCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHcCCHHHHCC
Confidence 3333444444445555556666667777766666643 334455554443
No 455
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=94.47 E-value=0.019 Score=53.54 Aligned_cols=22 Identities=32% Similarity=0.546 Sum_probs=20.1
Q ss_pred cEEEEEcCCCCCHHHHHHHHhc
Q psy1502 368 EKIGIVGRTGAGKSSLIAAIFR 389 (597)
Q Consensus 368 ~~vaIVG~SGsGKSTL~~LL~~ 389 (597)
=+|+++|++|+|||||++.+.+
T Consensus 21 ~ki~~vG~~~vGKTsLi~~l~~ 42 (196)
T 3llu_A 21 PRILLMGLRRSGKSSIQKVVFH 42 (196)
T ss_dssp CEEEEEESTTSSHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHh
Confidence 3799999999999999998887
No 456
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=94.46 E-value=0.019 Score=53.52 Aligned_cols=25 Identities=24% Similarity=0.376 Sum_probs=21.6
Q ss_pred cCCcEEEEEcCCCCCHHHHHHHHhc
Q psy1502 365 HPKEKIGIVGRTGAGKSSLIAAIFR 389 (597)
Q Consensus 365 ~~G~~vaIVG~SGsGKSTL~~LL~~ 389 (597)
++.=+|+++|++|+|||||++.+.+
T Consensus 27 ~~~~ki~v~G~~~vGKSsLi~~l~~ 51 (192)
T 2b6h_A 27 KKQMRILMVGLDAAGKTTILYKLKL 51 (192)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHCS
T ss_pred CCccEEEEECCCCCCHHHHHHHHHh
Confidence 3455799999999999999999874
No 457
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=94.46 E-value=0.019 Score=54.31 Aligned_cols=21 Identities=24% Similarity=0.456 Sum_probs=19.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q psy1502 369 KIGIVGRTGAGKSSLIAAIFR 389 (597)
Q Consensus 369 ~vaIVG~SGsGKSTL~~LL~~ 389 (597)
+|+|+|++|+|||||++.+.+
T Consensus 27 ki~vvG~~~~GKSsLi~~l~~ 47 (217)
T 2f7s_A 27 KLLALGDSGVGKTTFLYRYTD 47 (217)
T ss_dssp EEEEESCTTSSHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHhc
Confidence 689999999999999999986
No 458
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=94.45 E-value=0.02 Score=53.46 Aligned_cols=23 Identities=30% Similarity=0.385 Sum_probs=20.6
Q ss_pred CcEEEEEcCCCCCHHHHHHHHhc
Q psy1502 367 KEKIGIVGRTGAGKSSLIAAIFR 389 (597)
Q Consensus 367 G~~vaIVG~SGsGKSTL~~LL~~ 389 (597)
.=+|+++|++|+|||||++.+.+
T Consensus 20 ~~ki~~~G~~~~GKssl~~~l~~ 42 (201)
T 2q3h_A 20 GVKCVLVGDGAVGKTSLVVSYTT 42 (201)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHC
T ss_pred ceEEEEECCCCCCHHHHHHHHHh
Confidence 44799999999999999999985
No 459
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=94.45 E-value=0.014 Score=53.29 Aligned_cols=22 Identities=36% Similarity=0.679 Sum_probs=20.0
Q ss_pred cEEEEEcCCCCCHHHHHHHHhc
Q psy1502 368 EKIGIVGRTGAGKSSLIAAIFR 389 (597)
Q Consensus 368 ~~vaIVG~SGsGKSTL~~LL~~ 389 (597)
=+++++|++|+|||||++-+.+
T Consensus 8 ~ki~~vG~~~vGKTsli~~l~~ 29 (178)
T 2iwr_A 8 LRLGVLGDARSGKSSLIHRFLT 29 (178)
T ss_dssp EEEEEECCGGGCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHh
Confidence 3689999999999999999885
No 460
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=94.45 E-value=0.018 Score=53.30 Aligned_cols=21 Identities=43% Similarity=0.778 Sum_probs=19.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q psy1502 369 KIGIVGRTGAGKSSLIAAIFR 389 (597)
Q Consensus 369 ~vaIVG~SGsGKSTL~~LL~~ 389 (597)
+|+++|++|+|||||++-+.+
T Consensus 23 ki~vvG~~~vGKTsLi~~l~~ 43 (187)
T 3c5c_A 23 NLAILGRRGAGKSALTVKFLT 43 (187)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHh
Confidence 689999999999999988874
No 461
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=94.45 E-value=0.29 Score=51.98 Aligned_cols=28 Identities=21% Similarity=0.437 Sum_probs=23.7
Q ss_pred cCCcEEEEEcCCCCCHHHHHHHHhcccc
Q psy1502 365 HPKEKIGIVGRTGAGKSSLIAAIFRLAE 392 (597)
Q Consensus 365 ~~G~~vaIVG~SGsGKSTL~~LL~~l~~ 392 (597)
++...++++|++|+||||++.-|+..+.
T Consensus 98 ~~~~vI~ivG~~GvGKTT~a~~LA~~l~ 125 (433)
T 2xxa_A 98 QPPAVVLMAGLQGAGKTTSVGKLGKFLR 125 (433)
T ss_dssp SSSEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 3457899999999999999999987654
No 462
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=94.45 E-value=0.018 Score=53.97 Aligned_cols=21 Identities=33% Similarity=0.551 Sum_probs=19.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q psy1502 369 KIGIVGRTGAGKSSLIAAIFR 389 (597)
Q Consensus 369 ~vaIVG~SGsGKSTL~~LL~~ 389 (597)
+|+++|++|+|||||++.+.+
T Consensus 27 ki~vvG~~~~GKSsli~~l~~ 47 (201)
T 2gco_A 27 KLVIVGDGACGKTCLLIVFSK 47 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 689999999999999999986
No 463
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=94.41 E-value=0.019 Score=58.59 Aligned_cols=24 Identities=33% Similarity=0.389 Sum_probs=21.2
Q ss_pred cEEEEEcCCCCCHHHHHHHHhccc
Q psy1502 368 EKIGIVGRTGAGKSSLIAAIFRLA 391 (597)
Q Consensus 368 ~~vaIVG~SGsGKSTL~~LL~~l~ 391 (597)
..+.|+||||||||||.+.|+.-+
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l 29 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADAL 29 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc
Confidence 479999999999999999998643
No 464
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=94.40 E-value=0.013 Score=53.69 Aligned_cols=21 Identities=24% Similarity=0.536 Sum_probs=9.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q psy1502 369 KIGIVGRTGAGKSSLIAAIFR 389 (597)
Q Consensus 369 ~vaIVG~SGsGKSTL~~LL~~ 389 (597)
+|+++|++|+|||||++.+.+
T Consensus 10 ki~v~G~~~~GKssl~~~l~~ 30 (183)
T 2fu5_C 10 KLLLIGDSGVGKTCVLFRFSE 30 (183)
T ss_dssp EEEEECCCCC-----------
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 689999999999999998875
No 465
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=94.39 E-value=0.019 Score=54.22 Aligned_cols=23 Identities=22% Similarity=0.407 Sum_probs=20.2
Q ss_pred CcEEEEEcCCCCCHHHHHHHHhc
Q psy1502 367 KEKIGIVGRTGAGKSSLIAAIFR 389 (597)
Q Consensus 367 G~~vaIVG~SGsGKSTL~~LL~~ 389 (597)
.-+|+++|++|+|||||++.+.+
T Consensus 7 ~~ki~vvG~~~~GKTsli~~l~~ 29 (214)
T 2fh5_B 7 QRAVLFVGLCDSGKTLLFVRLLT 29 (214)
T ss_dssp -CEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 34799999999999999999885
No 466
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=94.35 E-value=0.021 Score=57.76 Aligned_cols=25 Identities=24% Similarity=0.426 Sum_probs=21.6
Q ss_pred CcEEEEEcCCCCCHHHHHHHHhccc
Q psy1502 367 KEKIGIVGRTGAGKSSLIAAIFRLA 391 (597)
Q Consensus 367 G~~vaIVG~SGsGKSTL~~LL~~l~ 391 (597)
...+.|+||||||||||+.-|+.-+
T Consensus 10 ~~~i~i~GptgsGKt~la~~La~~~ 34 (316)
T 3foz_A 10 PKAIFLMGPTASGKTALAIELRKIL 34 (316)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CcEEEEECCCccCHHHHHHHHHHhC
Confidence 4578999999999999999998643
No 467
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=94.32 E-value=0.018 Score=53.18 Aligned_cols=24 Identities=25% Similarity=0.408 Sum_probs=20.9
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHhc
Q psy1502 366 PKEKIGIVGRTGAGKSSLIAAIFR 389 (597)
Q Consensus 366 ~G~~vaIVG~SGsGKSTL~~LL~~ 389 (597)
+.=+|+++|++|+|||||++.+.+
T Consensus 21 ~~~~i~v~G~~~~GKssli~~l~~ 44 (189)
T 2x77_A 21 RKIRVLMLGLDNAGKTSILYRLHL 44 (189)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTCC
T ss_pred CceEEEEECCCCCCHHHHHHHHHc
Confidence 345799999999999999999964
No 468
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=94.31 E-value=0.023 Score=54.88 Aligned_cols=28 Identities=18% Similarity=0.160 Sum_probs=24.7
Q ss_pred cCCcEEEEEcCCCCCHHHHHHHHhcccc
Q psy1502 365 HPKEKIGIVGRTGAGKSSLIAAIFRLAE 392 (597)
Q Consensus 365 ~~G~~vaIVG~SGsGKSTL~~LL~~l~~ 392 (597)
++|..|.+.|++||||||+++.|...+.
T Consensus 19 ~~~~~i~~~G~~g~GKst~~~~l~~~l~ 46 (223)
T 3ld9_A 19 PGSMFITFEGIDGSGKTTQSHLLAEYLS 46 (223)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 4688999999999999999999987543
No 469
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=94.30 E-value=0.015 Score=64.73 Aligned_cols=39 Identities=21% Similarity=0.296 Sum_probs=29.2
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHhccccCCc--eEEEcceeC
Q psy1502 366 PKEKIGIVGRTGAGKSSLIAAIFRLAEVEG--VIKIDDIDT 404 (597)
Q Consensus 366 ~G~~vaIVG~SGsGKSTL~~LL~~l~~~~G--~I~idg~di 404 (597)
+|..|.|+|.+||||||+++.|.......| .+.+||..+
T Consensus 51 ~g~lIvLtGlsGSGKSTlAr~La~~L~~~G~~~v~lDgD~i 91 (630)
T 1x6v_B 51 RGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDNI 91 (630)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEESHHHH
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEechHHh
Confidence 467899999999999999999987543333 556665443
No 470
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=94.29 E-value=0.016 Score=57.22 Aligned_cols=28 Identities=32% Similarity=0.421 Sum_probs=23.7
Q ss_pred EcCCcEEEEEcCCCCCHHHHHHHHhccc
Q psy1502 364 IHPKEKIGIVGRTGAGKSSLIAAIFRLA 391 (597)
Q Consensus 364 I~~G~~vaIVG~SGsGKSTL~~LL~~l~ 391 (597)
.+++..|+|.|+.||||||+++.|...+
T Consensus 21 ~~~~~~I~ieG~~GsGKST~~~~L~~~l 48 (263)
T 1p5z_B 21 GTRIKKISIEGNIAAGKSTFVNILKQLC 48 (263)
T ss_dssp --CCEEEEEECSTTSSHHHHHTTTGGGC
T ss_pred ccCceEEEEECCCCCCHHHHHHHHHHhc
Confidence 3577899999999999999999998754
No 471
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=94.29 E-value=0.022 Score=55.32 Aligned_cols=26 Identities=19% Similarity=0.385 Sum_probs=22.8
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHhccc
Q psy1502 366 PKEKIGIVGRTGAGKSSLIAAIFRLA 391 (597)
Q Consensus 366 ~G~~vaIVG~SGsGKSTL~~LL~~l~ 391 (597)
+|..|+|.|..||||||+++.|...+
T Consensus 1 ~~~~i~~~G~~g~GKtt~~~~l~~~l 26 (241)
T 2ocp_A 1 GPRRLSIEGNIAVGKSTFVKLLTKTY 26 (241)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHHC
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHc
Confidence 36789999999999999999998644
No 472
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=94.28 E-value=0.022 Score=54.37 Aligned_cols=21 Identities=29% Similarity=0.563 Sum_probs=19.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q psy1502 369 KIGIVGRTGAGKSSLIAAIFR 389 (597)
Q Consensus 369 ~vaIVG~SGsGKSTL~~LL~~ 389 (597)
+|+|||++|+|||||++.+.+
T Consensus 39 kVvlvG~~~vGKSSLl~r~~~ 59 (211)
T 2g3y_A 39 RVVLIGEQGVGKSTLANIFAG 59 (211)
T ss_dssp EEEEECCTTSSHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 799999999999999999885
No 473
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=94.21 E-value=0.012 Score=55.73 Aligned_cols=21 Identities=33% Similarity=0.694 Sum_probs=19.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q psy1502 369 KIGIVGRTGAGKSSLIAAIFR 389 (597)
Q Consensus 369 ~vaIVG~SGsGKSTL~~LL~~ 389 (597)
+|+++|++|+|||||++.+.+
T Consensus 13 ki~vvG~~~~GKSsli~~l~~ 33 (218)
T 4djt_A 13 KICLIGDGGVGKTTYINRVLD 33 (218)
T ss_dssp EEEEECCTTSSHHHHHCBCTT
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 689999999999999999885
No 474
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=94.20 E-value=0.022 Score=52.81 Aligned_cols=21 Identities=29% Similarity=0.430 Sum_probs=19.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q psy1502 369 KIGIVGRTGAGKSSLIAAIFR 389 (597)
Q Consensus 369 ~vaIVG~SGsGKSTL~~LL~~ 389 (597)
+|+++|++|+|||||++.+.+
T Consensus 20 ki~v~G~~~~GKssli~~l~~ 40 (194)
T 2atx_A 20 KCVVVGDGAVGKTCLLMSYAN 40 (194)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 689999999999999999985
No 475
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=94.14 E-value=0.023 Score=57.03 Aligned_cols=22 Identities=27% Similarity=0.398 Sum_probs=20.1
Q ss_pred cEEEEEcCCCCCHHHHHHHHhc
Q psy1502 368 EKIGIVGRTGAGKSSLIAAIFR 389 (597)
Q Consensus 368 ~~vaIVG~SGsGKSTL~~LL~~ 389 (597)
..|.|+|++||||||+.+.|..
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999986
No 476
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=94.14 E-value=0.087 Score=61.10 Aligned_cols=25 Identities=24% Similarity=0.295 Sum_probs=22.3
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcccc
Q psy1502 368 EKIGIVGRTGAGKSSLIAAIFRLAE 392 (597)
Q Consensus 368 ~~vaIVG~SGsGKSTL~~LL~~l~~ 392 (597)
..+.|+||+|+|||++++.|.....
T Consensus 589 ~~vLl~Gp~GtGKT~lA~~la~~~~ 613 (854)
T 1qvr_A 589 GSFLFLGPTGVGKTELAKTLAATLF 613 (854)
T ss_dssp EEEEEBSCSSSSHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhc
Confidence 4789999999999999999998653
No 477
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=94.12 E-value=0.02 Score=61.17 Aligned_cols=35 Identities=31% Similarity=0.479 Sum_probs=29.7
Q ss_pred cceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhccc
Q psy1502 356 VIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA 391 (597)
Q Consensus 356 vL~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~ 391 (597)
+++.+ +.+-+|++++|+|+||+|||||++.|.+-.
T Consensus 141 ~ID~L-~pi~kGq~~~i~G~sGvGKTtL~~~l~~~~ 175 (473)
T 1sky_E 141 VVDLL-APYIKGGKIGLFGGAGVGKTVLIQELIHNI 175 (473)
T ss_dssp HHHHH-SCEETTCEEEEECCSSSCHHHHHHHHHHHH
T ss_pred HHHHH-hhhccCCEEEEECCCCCCccHHHHHHHhhh
Confidence 45555 567799999999999999999999998754
No 478
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=94.07 E-value=0.022 Score=54.73 Aligned_cols=29 Identities=17% Similarity=0.304 Sum_probs=24.6
Q ss_pred EEcCCcEEEEEcCCCCCHHHHHHHHhccc
Q psy1502 363 TIHPKEKIGIVGRTGAGKSSLIAAIFRLA 391 (597)
Q Consensus 363 ~I~~G~~vaIVG~SGsGKSTL~~LL~~l~ 391 (597)
..++...|.|+||.||||+|.++.|..-|
T Consensus 25 ~~~k~kiI~llGpPGsGKgTqa~~L~~~~ 53 (217)
T 3umf_A 25 KLAKAKVIFVLGGPGSGKGTQCEKLVQKF 53 (217)
T ss_dssp CTTSCEEEEEECCTTCCHHHHHHHHHHHH
T ss_pred hccCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 34667789999999999999999998654
No 479
>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}
Probab=94.06 E-value=0.011 Score=61.63 Aligned_cols=51 Identities=22% Similarity=0.307 Sum_probs=38.7
Q ss_pred cEEEEeeEEEeCCCCccce-----------eeeEEEcCCcEEEEEcCCCCCHHHHHHHHhcc
Q psy1502 340 KIEFQNTNVRYLSGPRVIK-----------NLNITIHPKEKIGIVGRTGAGKSSLIAAIFRL 390 (597)
Q Consensus 340 ~I~f~nVsf~Y~~~~~vL~-----------~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l 390 (597)
...|++++--||..+.-++ |.=+.|-+|++.+|+|++|+|||||+.-|.+.
T Consensus 137 r~~fe~l~Pi~P~~R~~le~e~~~tGiraID~l~PigrGQR~lIfg~~g~GKT~Ll~~Ia~~ 198 (427)
T 3l0o_A 137 RVNFDNLTPDYPRERFILETDPKIYSTRLIDLFAPIGKGQRGMIVAPPKAGKTTILKEIANG 198 (427)
T ss_dssp CCCGGGSCEECCCSBCCCCCSTTCHHHHHHHHHSCCBTTCEEEEEECTTCCHHHHHHHHHHH
T ss_pred ccccccCCCCCchhhccccccchhccchhhhhcccccCCceEEEecCCCCChhHHHHHHHHH
Confidence 3445666555654444455 55577899999999999999999999988875
No 480
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=94.05 E-value=0.024 Score=54.05 Aligned_cols=22 Identities=27% Similarity=0.528 Sum_probs=20.0
Q ss_pred cEEEEEcCCCCCHHHHHHHHhc
Q psy1502 368 EKIGIVGRTGAGKSSLIAAIFR 389 (597)
Q Consensus 368 ~~vaIVG~SGsGKSTL~~LL~~ 389 (597)
-+++|+|++|+|||||++-+++
T Consensus 39 ~~i~ivG~~gvGKTtl~~~l~~ 60 (226)
T 2hf9_A 39 VAFDFMGAIGSGKTLLIEKLID 60 (226)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHH
Confidence 4799999999999999998886
No 481
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=94.04 E-value=0.071 Score=57.39 Aligned_cols=77 Identities=16% Similarity=0.116 Sum_probs=55.8
Q ss_pred hhhhCCCCCCChhHHHHHH--HHHHHcc---------------CCCEEEeecCCCCCCHHHHHHHHHHHHHhcCCcEEEE
Q psy1502 466 MTVYEGGTNFSVGQRQLIC--LARAIVR---------------NNVILVLDEATANVDPKTDLLIQRTIRKKFADCTVLT 528 (597)
Q Consensus 466 T~vge~G~~LSGGQrQRIa--IARAll~---------------~p~ILILDEaTSaLD~~te~~I~~~l~~~~~~~TvI~ 528 (597)
+........+||||+|-.- ||-|++. .=.+++|||| |-+|.+.-...++-++++ +-=+|+
T Consensus 371 ~~~s~~~g~~SGGE~qp~Yv~i~As~~~~y~~~~~~~~~~~~~~~rlvvlDEA-~kmD~~~~~~~~~l~~~l--glQlii 447 (483)
T 3euj_A 371 GWMRAESSALSTGEAIGTGMSILLMVVQSWEEESRRMRAKDILPCRLLFLDQA-ARLDAMSINTLFELCERL--DMQLLI 447 (483)
T ss_dssp EEEECCGGGSCHHHHHHHHHHHHHHHHHHHHHHTSSSSCSSCCCCCEEEESSG-GGSCHHHHHHHHHHHHHT--TCEEEE
T ss_pred ceeecccCCCCCccccHHHHHHHHHHHHHhcccccccccCCCCceeEEEEecc-ccCCHHHHHHHHHHHHHc--CCEEEE
Confidence 4455556789999999533 3333222 1147999999 999999999999999987 777777
Q ss_pred eccCchhHhhcCEEEEEe
Q psy1502 529 IAHRLHTIMDSDKVLVMD 546 (597)
Q Consensus 529 IaHrlsti~~~D~Iivl~ 546 (597)
+|=. .....+|.+|.+-
T Consensus 448 atP~-~i~p~v~~~~~~~ 464 (483)
T 3euj_A 448 AAPE-NISPERGTTYKLV 464 (483)
T ss_dssp EESS-SCCCSSSEEEECC
T ss_pred ECcc-hhhhccCceEEEE
Confidence 7766 3335689988763
No 482
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=94.01 E-value=0.025 Score=53.21 Aligned_cols=23 Identities=26% Similarity=0.341 Sum_probs=20.3
Q ss_pred CcEEEEEcCCCCCHHHHHHHHhc
Q psy1502 367 KEKIGIVGRTGAGKSSLIAAIFR 389 (597)
Q Consensus 367 G~~vaIVG~SGsGKSTL~~LL~~ 389 (597)
.=+|+++|++|+|||||++.+.+
T Consensus 30 ~~ki~vvG~~~~GKSsLi~~l~~ 52 (204)
T 4gzl_A 30 AIKCVVVGDGAVGKTCLLISYTT 52 (204)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEEECcCCCCHHHHHHHHHh
Confidence 44799999999999999998874
No 483
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=94.00 E-value=0.026 Score=59.25 Aligned_cols=25 Identities=40% Similarity=0.456 Sum_probs=21.4
Q ss_pred CcEEEEEcCCCCCHHHHHHHHhccc
Q psy1502 367 KEKIGIVGRTGAGKSSLIAAIFRLA 391 (597)
Q Consensus 367 G~~vaIVG~SGsGKSTL~~LL~~l~ 391 (597)
...++|+||||||||||+.-|+.-+
T Consensus 2 ~~~i~i~GptgsGKttla~~La~~~ 26 (409)
T 3eph_A 2 KKVIVIAGTTGVGKSQLSIQLAQKF 26 (409)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHHHH
T ss_pred CcEEEEECcchhhHHHHHHHHHHHC
Confidence 3578999999999999999998643
No 484
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=93.93 E-value=0.027 Score=55.72 Aligned_cols=24 Identities=29% Similarity=0.416 Sum_probs=21.8
Q ss_pred cEEEEEcCCCCCHHHHHHHHhccc
Q psy1502 368 EKIGIVGRTGAGKSSLIAAIFRLA 391 (597)
Q Consensus 368 ~~vaIVG~SGsGKSTL~~LL~~l~ 391 (597)
-++++||.+|+|||||++.|.|-.
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~~ 123 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGKR 123 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTC
T ss_pred hheEEeCCCCCCHHHHHHHHhccc
Confidence 589999999999999999999743
No 485
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=93.92 E-value=0.026 Score=52.89 Aligned_cols=21 Identities=24% Similarity=0.466 Sum_probs=19.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q psy1502 369 KIGIVGRTGAGKSSLIAAIFR 389 (597)
Q Consensus 369 ~vaIVG~SGsGKSTL~~LL~~ 389 (597)
+|+++|++|+|||||++.+.+
T Consensus 31 ki~vvG~~~vGKSsli~~l~~ 51 (201)
T 2hup_A 31 KLVLVGDASVGKTCVVQRFKT 51 (201)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHhh
Confidence 689999999999999999875
No 486
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=93.91 E-value=0.0029 Score=72.97 Aligned_cols=45 Identities=24% Similarity=0.351 Sum_probs=35.7
Q ss_pred eeEEEcCCcEEEEEcCCCCCHHHHHHHHhccccCCceEEEcceeCC
Q psy1502 360 LNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAEVEGVIKIDDIDTE 405 (597)
Q Consensus 360 isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l~~~~G~I~idg~di~ 405 (597)
.++.+++++.+.++||+|+|||||++.|++... .+-+.+++.++.
T Consensus 504 ~~~~~~~~~~vLL~GppGtGKT~Lakala~~~~-~~~i~v~~~~l~ 548 (806)
T 1ypw_A 504 LKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQ-ANFISIKGPELL 548 (806)
T ss_dssp TCCCCCCCCCCCCBCCTTSSHHHHHHHHHHHHT-CCCCCCCCSSST
T ss_pred HhcCCCCCceeEEECCCCCCHHHHHHHHHHHhC-CCEEEEechHhh
Confidence 467789999999999999999999999998652 345556665554
No 487
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=93.85 E-value=0.024 Score=51.79 Aligned_cols=27 Identities=19% Similarity=0.374 Sum_probs=23.0
Q ss_pred cCCcEEEEEcCCCCCHHHHHHHHhccc
Q psy1502 365 HPKEKIGIVGRTGAGKSSLIAAIFRLA 391 (597)
Q Consensus 365 ~~G~~vaIVG~SGsGKSTL~~LL~~l~ 391 (597)
+.+..+.|+||+|+|||||++.+....
T Consensus 41 ~~~~~vll~G~~G~GKT~la~~~~~~~ 67 (187)
T 2p65_A 41 RTKNNPILLGDPGVGKTAIVEGLAIKI 67 (187)
T ss_dssp SSSCEEEEESCGGGCHHHHHHHHHHHH
T ss_pred CCCCceEEECCCCCCHHHHHHHHHHHH
Confidence 446778999999999999999998743
No 488
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=93.83 E-value=9.4 Score=41.86 Aligned_cols=56 Identities=5% Similarity=-0.091 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhhcccChhHHHH
Q psy1502 65 YIGIYFSLIVGLFVAGISRSTAFYSACMRCSKGIHKKMFEAVVYSPLAFFSTNPSGRILN 124 (597)
Q Consensus 65 ~i~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~~f~~~~sG~l~~ 124 (597)
.+..+++++++..++..+..++..+...+...++..++-..+.+ ...+.+.+..-+
T Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~----~ll~~~~~~~~~ 116 (587)
T 3qf4_A 61 LVLKTGILMLIVALIGAVGGIGCTVFASYASQNFGADLRRDLFR----KVLSFSISNVNR 116 (587)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHCCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHCCCHHHHcc
Confidence 34444555555555566666666667777777777777776632 233445544433
No 489
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=93.79 E-value=0.022 Score=62.87 Aligned_cols=38 Identities=18% Similarity=0.135 Sum_probs=29.2
Q ss_pred cCCcEEEEEcCCCCCHHHHHHHHhccccCCc---eEEEcce
Q psy1502 365 HPKEKIGIVGRTGAGKSSLIAAIFRLAEVEG---VIKIDDI 402 (597)
Q Consensus 365 ~~G~~vaIVG~SGsGKSTL~~LL~~l~~~~G---~I~idg~ 402 (597)
.+|..|.|.|.+||||||+++.|...+...| .+.+|+-
T Consensus 394 q~~~~I~l~GlsGSGKSTiA~~La~~L~~~G~~~~~~lD~D 434 (573)
T 1m8p_A 394 TQGFTIFLTGYMNSGKDAIARALQVTLNQQGGRSVSLLLGD 434 (573)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHHHHHHHHCSSCEEEEEHH
T ss_pred ccceEEEeecCCCCCHHHHHHHHHHHhcccCCceEEEECcH
Confidence 3567899999999999999999987554334 4666643
No 490
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=93.77 E-value=0.028 Score=56.96 Aligned_cols=25 Identities=40% Similarity=0.639 Sum_probs=21.9
Q ss_pred cCCcEEEEEcCCCCCHHHHHHHHhc
Q psy1502 365 HPKEKIGIVGRTGAGKSSLIAAIFR 389 (597)
Q Consensus 365 ~~G~~vaIVG~SGsGKSTL~~LL~~ 389 (597)
|++-+|+++|++|+|||||++.+.+
T Consensus 1 ~~~~KI~lvG~~~vGKSSLi~~l~~ 25 (307)
T 3r7w_A 1 PLGSKLLLMGRSGSGKSSMRSIIFS 25 (307)
T ss_dssp CCEEEEEEECCTTSSHHHHHHHHHS
T ss_pred CCceEEEEECCCCCCHHHHHHHHHh
Confidence 3566899999999999999999775
No 491
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=93.76 E-value=0.014 Score=54.43 Aligned_cols=22 Identities=36% Similarity=0.575 Sum_probs=4.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhcc
Q psy1502 369 KIGIVGRTGAGKSSLIAAIFRL 390 (597)
Q Consensus 369 ~vaIVG~SGsGKSTL~~LL~~l 390 (597)
+|+++|++|+|||||++.+.+-
T Consensus 22 ~i~v~G~~~~GKssli~~l~~~ 43 (208)
T 2yc2_C 22 KVAVVGEATVGKSALISMFTSK 43 (208)
T ss_dssp EEEEC-----------------
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 6999999999999999988753
No 492
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=93.73 E-value=0.03 Score=53.40 Aligned_cols=21 Identities=38% Similarity=0.730 Sum_probs=19.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q psy1502 369 KIGIVGRTGAGKSSLIAAIFR 389 (597)
Q Consensus 369 ~vaIVG~SGsGKSTL~~LL~~ 389 (597)
+|+|+|++|+|||||++.+.+
T Consensus 15 ki~v~G~~~vGKSsli~~l~~ 35 (223)
T 3cpj_B 15 KIVLIGDSGVGKSNLLSRFTK 35 (223)
T ss_dssp EEEEESCTTSSHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHhc
Confidence 689999999999999999985
No 493
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=93.67 E-value=0.032 Score=53.00 Aligned_cols=22 Identities=23% Similarity=0.498 Sum_probs=20.0
Q ss_pred cEEEEEcCCCCCHHHHHHHHhc
Q psy1502 368 EKIGIVGRTGAGKSSLIAAIFR 389 (597)
Q Consensus 368 ~~vaIVG~SGsGKSTL~~LL~~ 389 (597)
=+|+++|++|+|||||++.+.+
T Consensus 28 ~ki~vvG~~~vGKSsL~~~l~~ 49 (214)
T 3q3j_B 28 CKLVLVGDVQCGKTAMLQVLAK 49 (214)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEECcCCCCHHHHHHHHhc
Confidence 4789999999999999999875
No 494
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=93.61 E-value=0.036 Score=55.48 Aligned_cols=25 Identities=28% Similarity=0.371 Sum_probs=22.0
Q ss_pred CcEEEEEcCCCCCHHHHHHHHhccc
Q psy1502 367 KEKIGIVGRTGAGKSSLIAAIFRLA 391 (597)
Q Consensus 367 G~~vaIVG~SGsGKSTL~~LL~~l~ 391 (597)
+-++++||.+|+|||||+|.|.|-.
T Consensus 120 ~~~v~~vG~~nvGKSsliN~l~~~~ 144 (282)
T 1puj_A 120 AIRALIIGIPNVGKSTLINRLAKKN 144 (282)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CceEEEEecCCCchHHHHHHHhcCc
Confidence 3479999999999999999999853
No 495
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=93.60 E-value=0.03 Score=58.33 Aligned_cols=25 Identities=32% Similarity=0.432 Sum_probs=23.1
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHhcc
Q psy1502 366 PKEKIGIVGRTGAGKSSLIAAIFRL 390 (597)
Q Consensus 366 ~G~~vaIVG~SGsGKSTL~~LL~~l 390 (597)
++..+++||++|+|||||+|.|.+-
T Consensus 161 ~~~~i~~vG~~nvGKStliN~L~~~ 185 (369)
T 3ec1_A 161 EGGDVYVVGCTNVGKSTFINRIIEE 185 (369)
T ss_dssp TTSCEEEECCTTSSHHHHHHHHHHH
T ss_pred ccCcEEEEcCCCCchHHHHHHHHhh
Confidence 5778999999999999999999985
No 496
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=93.53 E-value=0.034 Score=52.32 Aligned_cols=22 Identities=23% Similarity=0.279 Sum_probs=19.9
Q ss_pred cEEEEEcCCCCCHHHHHHHHhc
Q psy1502 368 EKIGIVGRTGAGKSSLIAAIFR 389 (597)
Q Consensus 368 ~~vaIVG~SGsGKSTL~~LL~~ 389 (597)
=+|+++|++|+|||||++.+.+
T Consensus 10 ~ki~i~G~~~~GKTsli~~l~~ 31 (212)
T 2j0v_A 10 IKCVTVGDGAVGKTCMLICYTS 31 (212)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHhc
Confidence 3799999999999999999875
No 497
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=93.51 E-value=0.031 Score=58.23 Aligned_cols=25 Identities=28% Similarity=0.454 Sum_probs=23.2
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHhcc
Q psy1502 366 PKEKIGIVGRTGAGKSSLIAAIFRL 390 (597)
Q Consensus 366 ~G~~vaIVG~SGsGKSTL~~LL~~l 390 (597)
++..+++||++|+|||||+|.|.+-
T Consensus 159 ~~~~i~~vG~~nvGKStliN~L~~~ 183 (368)
T 3h2y_A 159 GGKDVYVVGCTNVGKSTFINRMIKE 183 (368)
T ss_dssp TTSCEEEEEBTTSSHHHHHHHHHHH
T ss_pred ccceEEEecCCCCChhHHHHHHHhh
Confidence 6789999999999999999999975
No 498
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=93.49 E-value=0.048 Score=50.83 Aligned_cols=52 Identities=13% Similarity=0.179 Sum_probs=33.8
Q ss_pred CCCEEEeecCCCCCCHHHHHHHHHHHHHhcCCcEEEEeccCch-----------hHhhcCEEEEEeC
Q psy1502 492 NNVILVLDEATANVDPKTDLLIQRTIRKKFADCTVLTIAHRLH-----------TIMDSDKVLVMDS 547 (597)
Q Consensus 492 ~p~ILILDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrls-----------ti~~~D~Iivl~~ 547 (597)
+++++++||+-- +|++-...+.... + .+..+|+..++.. .+..||.|..|+.
T Consensus 76 ~~dvviIDE~Q~-~~~~~~~~l~~l~-~--~~~~Vi~~Gl~~~f~~~~f~~~~~ll~~ad~v~~l~~ 138 (184)
T 2orw_A 76 DTRGVFIDEVQF-FNPSLFEVVKDLL-D--RGIDVFCAGLDLTHKQNPFETTALLLSLADTVIKKKA 138 (184)
T ss_dssp TEEEEEECCGGG-SCTTHHHHHHHHH-H--TTCEEEEEEESBCTTSCBCHHHHHHHHHCSEEEECCB
T ss_pred CCCEEEEECccc-CCHHHHHHHHHHH-H--CCCCEEEEeeccccccCCccchHHHHHHhhheEEeee
Confidence 678999999864 6554333332222 2 2778888888544 4456999988754
No 499
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=93.44 E-value=0.011 Score=58.23 Aligned_cols=32 Identities=31% Similarity=0.386 Sum_probs=24.9
Q ss_pred ceeeeEEEcCCcEEEEEcCCCCCHHHHHHHHhcc
Q psy1502 357 IKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRL 390 (597)
Q Consensus 357 L~~isl~I~~G~~vaIVG~SGsGKSTL~~LL~~l 390 (597)
+.+..+..++| +.|.||+|+|||||++.+.+-
T Consensus 36 ~~~~~~~~~~~--vll~G~~GtGKT~la~~la~~ 67 (268)
T 2r62_A 36 YANLGAKIPKG--VLLVGPPGTGKTLLAKAVAGE 67 (268)
T ss_dssp HHHHSCCCCSC--CCCBCSSCSSHHHHHHHHHHH
T ss_pred HHHCCCCCCce--EEEECCCCCcHHHHHHHHHHH
Confidence 44444455555 889999999999999999873
No 500
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=93.44 E-value=0.045 Score=52.75 Aligned_cols=25 Identities=24% Similarity=0.445 Sum_probs=22.4
Q ss_pred EcCCcEEEEEcCCCCCHHHHHHHHh
Q psy1502 364 IHPKEKIGIVGRTGAGKSSLIAAIF 388 (597)
Q Consensus 364 I~~G~~vaIVG~SGsGKSTL~~LL~ 388 (597)
+++|+.+.|.|++|+|||||+.-++
T Consensus 27 l~~G~l~~i~G~pG~GKT~l~l~~~ 51 (251)
T 2zts_A 27 FPEGTTVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp EETTCEEEEECCTTSSHHHHHHHHH
T ss_pred CCCCeEEEEEeCCCCCHHHHHHHHH
Confidence 7999999999999999999986543
Done!