RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy1502
(597 letters)
>gnl|CDD|188098 TIGR00957, MRP_assoc_pro, multi drug resistance-associated protein
(MRP). This model describes multi drug
resistance-associated protein (MRP) in eukaryotes. The
multidrug resistance-associated protein is an integral
membrane protein that causes multidrug resistance when
overexpressed in mammalian cells. It belongs to ABC
transporter superfamily. The protein topology and
function was experimentally demonstrated by epitope
tagging and immunofluorescence. Insertion of tags in the
critical regions associated with drug efflux, abrogated
its function. The C-terminal domain seem to highly
conserved [Transport and binding proteins, Other].
Length = 1522
Score = 396 bits (1018), Expect = e-123
Identities = 207/507 (40%), Positives = 300/507 (59%), Gaps = 31/507 (6%)
Query: 71 SLIVGLFVA-GISRSTAFYSACMRCSKG-------IHKKMFEAVVYSPLAFFSTNPSGRI 122
SL + ++ A GI + A + M S G +H+ + + SP++FF PSG +
Sbjct: 1005 SLRLSVYGALGILQGFAVFGYSMAVSIGGIQASRVLHQDLLHNKLRSPMSFFERTPSGNL 1064
Query: 123 LNRFSKDMGAVDEVLPKAMLDAAQGVMQVSGALIVSLSVNPLFS--IPVLILLYLFWRLS 180
+NRFSK++ VD ++P + + V GALIV L P+ + IP L LLY F +
Sbjct: 1065 VNRFSKELDTVDSMIPPVIKMFMGSLFNVIGALIVILLATPIAAVIIPPLGLLYFF--VQ 1122
Query: 181 KAYLRTSKSLKYLEGVTRSPVFTHLNACLHGLPTIRAHGAAKILVEEFDYHQDLHSSTWH 240
+ Y+ +S+ LK LE V+RSPV++H N L G+ IRA + + + D D + ++
Sbjct: 1123 RFYVASSRQLKRLESVSRSPVYSHFNETLLGVSVIRAFEEQERFIHQSDLKVDENQKAYY 1182
Query: 241 LFVYTNMGFAYLIDFL--CLLYLSTILISFFFFADIG------GKVGLAVTQTMTLMGVV 292
+ N A ++ + C++ + + FA I G VGL+V+ ++ + +
Sbjct: 1183 PSIVANRWLAVRLECVGNCIVLFAAL------FAVISRHSLSAGLVGLSVSYSLQVTFYL 1236
Query: 293 QWAMRQAAEVENHMISVKRLVEYTKLEPEGNLSPNYEDENEIWPVLGKIEFQNTNVRYLS 352
W +R ++E+E ++++V+RL EY++ E E WP G++EF+N +RY
Sbjct: 1237 NWLVRMSSEMETNIVAVERLKEYSETEKEAPWQIQETAPPSGWPPRGRVEFRNYCLRYRE 1296
Query: 353 G-PRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAE-VEGVIKIDDIDTEDVPLS 410
V++++N+TIH EK+GIVGRTGAGKSSL +FR+ E EG I ID ++ + L
Sbjct: 1297 DLDLVLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRINESAEGEIIIDGLNIAKIGLH 1356
Query: 411 KLRSNISIIPQDPVLFSGTLRKNLDPFEKYPDYVLWTALQEVELKDMI-MEGAGLNMTVY 469
LR I+IIPQDPVLFSG+LR NLDPF +Y D +W AL+ LK + L+
Sbjct: 1357 DLRFKITIIPQDPVLFSGSLRMNLDPFSQYSDEEVWWALELAHLKTFVSALPDKLDHECA 1416
Query: 470 EGGTNFSVGQRQLICLARAIVRNNVILVLDEATANVDPKTDLLIQRTIRKKFADCTVLTI 529
EGG N SVGQRQL+CLARA++R ILVLDEATA VD +TD LIQ TIR +F DCTVLTI
Sbjct: 1417 EGGENLSVGQRQLVCLARALLRKTKILVLDEATAAVDLETDNLIQSTIRTQFEDCTVLTI 1476
Query: 530 AHRLHTIMDSDKVLVMDSGVAVVSSFG 556
AHRL+TIMD +V+V+D G V+ FG
Sbjct: 1477 AHRLNTIMDYTRVIVLDKG--EVAEFG 1501
Score = 59.2 bits (143), Expect = 5e-09
Identities = 59/251 (23%), Positives = 107/251 (42%), Gaps = 27/251 (10%)
Query: 307 ISVKRLVEYTKLEPEGNLSPNYEDENEIWPVLG-KIEFQNTNVRYLSG-PRVIKNLNITI 364
+S+KRL + E L P+ + I P G I N + P + + +I
Sbjct: 605 VSLKRLRIFLSHE---ELEPDSIERRTIKPGEGNSITVHNATFTWARDLPPTLNGITFSI 661
Query: 365 HPKEKIGIVGRTGAGKSSLIAAIF-RLAEVEGVIKIDDIDTEDVPLSKLRSNISIIPQDP 423
+ +VG+ G GKSSL++A+ + +VEG + + + +++ +PQ
Sbjct: 662 PEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVHM-------------KGSVAYVPQQA 708
Query: 424 VLFSGTLRKNL---DPFEKYPDYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQR 480
+ + +LR+N+ Y L D+ + +G + E G N S GQ+
Sbjct: 709 WIQNDSLRENILFGKALN--EKYYQQVLEACALLPDLEILPSGDRTEIGEKGVNLSGGQK 766
Query: 481 QLICLARAIVRNNVILVLDEATANVDPKTDLLI-QRTIRKK--FADCTVLTIAHRLHTIM 537
Q + LARA+ N I + D+ + VD I + I + + T + + H + +
Sbjct: 767 QRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFEHVIGPEGVLKNKTRILVTHGISYLP 826
Query: 538 DSDKVLVMDSG 548
D ++VM G
Sbjct: 827 QVDVIIVMSGG 837
>gnl|CDD|213211 cd03244, ABCC_MRP_domain2, ATP-binding cassette domain 2 of
multidrug resistance-associated protein. The ABC
subfamily C is also known as MRP (multidrug
resistance-associated protein). Some of the MRP members
have five additional transmembrane segments in their
N-terminus, but the function of these additional
membrane-spanning domains is not clear. The MRP was
found in the multidrug-resistance lung cancer cell in
which p-glycoprotein was not overexpressed. MRP exports
glutathione by drug stimulation, as well as, certain
substrates in conjugated forms with anions, such as
glutathione, glucuronate, and sulfate.
Length = 221
Score = 350 bits (900), Expect = e-118
Identities = 132/216 (61%), Positives = 164/216 (75%), Gaps = 3/216 (1%)
Query: 339 GKIEFQNTNVRYLSG-PRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAEV-EGV 396
G IEF+N ++RY P V+KN++ +I P EK+GIVGRTG+GKSSL+ A+FRL E+ G
Sbjct: 1 GDIEFKNVSLRYRPNLPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGS 60
Query: 397 IKIDDIDTEDVPLSKLRSNISIIPQDPVLFSGTLRKNLDPFEKYPDYVLWTALQEVELKD 456
I ID +D + L LRS ISIIPQDPVLFSGT+R NLDPF +Y D LW AL+ V LK+
Sbjct: 61 ILIDGVDISKIGLHDLRSRISIIPQDPVLFSGTIRSNLDPFGEYSDEELWQALERVGLKE 120
Query: 457 MIME-GAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATANVDPKTDLLIQR 515
+ GL+ V EGG N SVGQRQL+CLARA++R + ILVLDEATA+VDP+TD LIQ+
Sbjct: 121 FVESLPGGLDTVVEEGGENLSVGQRQLLCLARALLRKSKILVLDEATASVDPETDALIQK 180
Query: 516 TIRKKFADCTVLTIAHRLHTIMDSDKVLVMDSGVAV 551
TIR+ F DCTVLTIAHRL TI+DSD++LV+D G V
Sbjct: 181 TIREAFKDCTVLTIAHRLDTIIDSDRILVLDKGRVV 216
>gnl|CDD|215595 PLN03130, PLN03130, ABC transporter C family member; Provisional.
Length = 1622
Score = 369 bits (948), Expect = e-113
Identities = 211/562 (37%), Positives = 311/562 (55%), Gaps = 53/562 (9%)
Query: 65 YIGIYFSLIVGLFVAGISRSTAFYSACMRCSKGIHKKMFEAVVYSPLAFFSTNPSGRILN 124
Y IY L G + + S + + +K +H M +++ +P++FF TNP GRI+N
Sbjct: 955 YNLIYALLSFGQVLVTLLNSYWLIMSSLYAAKRLHDAMLGSILRAPMSFFHTNPLGRIIN 1014
Query: 125 RFSKDMGAVDE-VLPKAMLDAAQGVMQVSG-ALIVSLSVNPLFSI-PVLILLYLFWRLSK 181
RF+KD+G +D V + Q +S LI +S L++I P+L+L Y
Sbjct: 1015 RFAKDLGDIDRNVAVFVNMFLGQIFQLLSTFVLIGIVSTISLWAIMPLLVLFY------G 1068
Query: 182 AYL---RTSKSLKYLEGVTRSPVFTHLNACLHGLPTIRAHGAAKILVEEFDYHQDLHSST 238
AYL T++ +K L+ +TRSPV+ L+GL TIRA+ A +D +++ +
Sbjct: 1069 AYLYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKA-------YDRMAEINGRS 1121
Query: 239 WH---LFVYTNMG----FAYLIDFL--CLLYLSTILISFFFF--------ADIGGKVGLA 281
F NM A ++ L +++L+ SF A +GL
Sbjct: 1122 MDNNIRFTLVNMSSNRWLAIRLETLGGLMIWLTA---SFAVMQNGRAENQAAFASTMGLL 1178
Query: 282 VTQTMTLMGVVQWAMRQAAEVENHMISVKRLVEYTKLEPEGNLSPNYEDENEIWPVLGKI 341
++ + + ++ +R A+ EN + +V+R+ Y L E L WP G I
Sbjct: 1179 LSYALNITSLLTAVLRLASLAENSLNAVERVGTYIDLPSEAPLVIENNRPPPGWPSSGSI 1238
Query: 342 EFQNTNVRYLSG-PRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAEVE-GVIKI 399
+F++ +RY P V+ L+ I P EK+GIVGRTGAGKSS++ A+FR+ E+E G I I
Sbjct: 1239 KFEDVVLRYRPELPPVLHGLSFEISPSEKVGIVGRTGAGKSSMLNALFRIVELERGRILI 1298
Query: 400 DDIDTEDVPLSKLRSNISIIPQDPVLFSGTLRKNLDPFEKYPDYVLWTALQEVELKDMIM 459
D D L LR + IIPQ PVLFSGT+R NLDPF ++ D LW +L+ LKD+I
Sbjct: 1299 DGCDISKFGLMDLRKVLGIIPQAPVLFSGTVRFNLDPFNEHNDADLWESLERAHLKDVIR 1358
Query: 460 EGA-GLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATANVDPKTDLLIQRTIR 518
+ GL+ V E G NFSVGQRQL+ LARA++R + ILVLDEATA VD +TD LIQ+TIR
Sbjct: 1359 RNSLGLDAEVSEAGENFSVGQRQLLSLARALLRRSKILVLDEATAAVDVRTDALIQKTIR 1418
Query: 519 KKFADCTVLTIAHRLHTIMDSDKVLVMDSGVAV--------VSSFGFFFSKDLIE--GTV 568
++F CT+L IAHRL+TI+D D++LV+D+G V +S+ G FSK +++ G
Sbjct: 1419 EEFKSCTMLIIAHRLNTIIDCDRILVLDAGRVVEFDTPENLLSNEGSAFSK-MVQSTGAA 1477
Query: 569 SAKVLSSRKRREKEDRIGESQS 590
+A+ L S EDR+ +S
Sbjct: 1478 NAQYLRSLVFGGDEDRLAREES 1499
Score = 67.8 bits (166), Expect = 1e-11
Identities = 81/303 (26%), Positives = 143/303 (47%), Gaps = 41/303 (13%)
Query: 264 ILISFFFFADIGGKVGLAVTQT-MTLMGVVQWAMRQ----AAEVENHMISVKRLVEYTKL 318
++SF F +GG + A T ++L V+++ + + N +S+KRL E L
Sbjct: 538 TVVSFGVFTLLGGDLTPARAFTSLSLFAVLRFPLFMLPNLITQAVNANVSLKRLEELL-L 596
Query: 319 EPEGNLSPNYEDENEIWPVLGKIEFQNTNVRYLS-GPR-VIKNLNITIHPKEKIGIVGRT 376
E L PN + P L I +N + S R + N+N+ + + IVG T
Sbjct: 597 AEERVLLPN----PPLEPGLPAISIKNGYFSWDSKAERPTLSNINLDVPVGSLVAIVGST 652
Query: 377 GAGKSSLIAAIFRLAEVEGVIKIDDIDTEDVPLSKLRSNISIIPQDPVLFSGTLRKNL-- 434
G GK+SLI+A+ L E+ D V +R ++ +PQ +F+ T+R N+
Sbjct: 653 GEGKTSLISAM--LGELPPR-----SDASVV----IRGTVAYVPQVSWIFNATVRDNILF 701
Query: 435 -DPFE--KYPDYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVR 491
PF+ +Y + TALQ D+ + G + E G N S GQ+Q + +ARA+
Sbjct: 702 GSPFDPERYERAIDVTALQ----HDLDLLPGGDLTEIGERGVNISGGQKQRVSMARAVYS 757
Query: 492 NNVILVLDEATANVDPKT-----DLLIQRTIRKKFADCTVLTIAHRLHTIMDSDKVLVMD 546
N+ + + D+ + +D D I+ +R K T + + ++LH + D+++++
Sbjct: 758 NSDVYIFDDPLSALDAHVGRQVFDKCIKDELRGK----TRVLVTNQLHFLSQVDRIILVH 813
Query: 547 SGV 549
G+
Sbjct: 814 EGM 816
>gnl|CDD|215640 PLN03232, PLN03232, ABC transporter C family member; Provisional.
Length = 1495
Score = 343 bits (881), Expect = e-104
Identities = 204/505 (40%), Positives = 300/505 (59%), Gaps = 32/505 (6%)
Query: 65 YIGIYFSLIVGLFVAGISRSTAFYSACMRCSKGIHKKMFEAVVYSPLAFFSTNPSGRILN 124
YI +Y L G + S S+ + +K +H M +++ +P+ FF TNP+GR++N
Sbjct: 952 YIVVYALLGFGQVAVTFTNSFWLISSSLHAAKRLHDAMLNSILRAPMLFFHTNPTGRVIN 1011
Query: 125 RFSKDMGAVDEVLPKAMLDAAQGVMQV--SGALIVSLSVNPLFSI-PVLILLYLFWRLSK 181
RFSKD+G +D + M + Q+ + ALI ++S L++I P+LIL Y +
Sbjct: 1012 RFSKDIGDIDRNVANLMNMFMNQLWQLLSTFALIGTVSTISLWAIMPLLILFYAAYLY-- 1069
Query: 182 AYLRTSKSLKYLEGVTRSPVFTHLNACLHGLPTIRAHGA----AKILVEEFDYH-----Q 232
Y TS+ ++ L+ VTRSP++ L+GL +IRA+ A AKI + D +
Sbjct: 1070 -YQSTSREVRRLDSVTRSPIYAQFGEALNGLSSIRAYKAYDRMAKINGKSMDNNIRFTLA 1128
Query: 233 DLHSSTWHLFVYTNMG--FAYLI-DFLCLLYLSTILISFFFFADIGGKVGLAVTQTMTLM 289
+ S+ W +G +L F L + + FA +GL ++ T+ +
Sbjct: 1129 NTSSNRWLTIRLETLGGVMIWLTATFAVLRNGNAE--NQAGFAST---MGLLLSYTLNIT 1183
Query: 290 GVVQWAMRQAAEVENHMISVKRLVEYTKLEPEGNLSPNYEDENEI---WPVLGKIEFQNT 346
++ +RQA++ EN + SV+R+ Y L E + + N WP G I+F++
Sbjct: 1184 TLLSGVLRQASKAENSLNSVERVGNYIDLPSE---ATAIIENNRPVSGWPSRGSIKFEDV 1240
Query: 347 NVRYLSG-PRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAEVE-GVIKIDDIDT 404
++RY G P V+ L+ + P EK+G+VGRTGAGKSS++ A+FR+ E+E G I IDD D
Sbjct: 1241 HLRYRPGLPPVLHGLSFFVSPSEKVGVVGRTGAGKSSMLNALFRIVELEKGRIMIDDCDV 1300
Query: 405 EDVPLSKLRSNISIIPQDPVLFSGTLRKNLDPFEKYPDYVLWTALQEVELKDMIMEGA-G 463
L+ LR +SIIPQ PVLFSGT+R N+DPF ++ D LW AL+ +KD+I G
Sbjct: 1301 AKFGLTDLRRVLSIIPQSPVLFSGTVRFNIDPFSEHNDADLWEALERAHIKDVIDRNPFG 1360
Query: 464 LNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATANVDPKTDLLIQRTIRKKFAD 523
L+ V EGG NFSVGQRQL+ LARA++R + ILVLDEATA+VD +TD LIQRTIR++F
Sbjct: 1361 LDAEVSEGGENFSVGQRQLLSLARALLRRSKILVLDEATASVDVRTDSLIQRTIREEFKS 1420
Query: 524 CTVLTIAHRLHTIMDSDKVLVMDSG 548
CT+L IAHRL+TI+D DK+LV+ SG
Sbjct: 1421 CTMLVIAHRLNTIIDCDKILVLSSG 1445
Score = 78.5 bits (193), Expect = 6e-15
Identities = 113/493 (22%), Positives = 218/493 (44%), Gaps = 57/493 (11%)
Query: 118 PSGRILNRFSKDMGAVDEVLPKAM-LDAAQGVMQVSGALIVS-LSVNPLFSIPVLILLYL 175
SG++ N + D A+ ++ + L +A + VS L+ L V LF +L LL
Sbjct: 396 ASGKVTNMITTDANALQQIAEQLHGLWSAPFRIIVSMVLLYQQLGVASLFGSLILFLLIP 455
Query: 176 FWRLSKAYLRTSKSLKYLEGVTRSPVFTHL-NACLHGLPTIRAHGAAKILVEEFDYH-QD 233
L +R EG+ + + N L + T++ + K F+ Q
Sbjct: 456 LQTLIVRKMRKLTK----EGLQWTDKRVGIINEILASMDTVKCYAWEK----SFESRIQG 507
Query: 234 LHSSTWHLFVYTNMGFAYLIDFLCLLYLSTILISFFFFADIGGKVGLAVTQT-MTLMGVV 292
+ + F + A+ L + + L+SF F +GG + A T ++L V+
Sbjct: 508 IRNEELSWFRKAQLLSAFNSFILNSIPVVVTLVSFGVFVLLGGDLTPARAFTSLSLFAVL 567
Query: 293 QWAMRQ----AAEVENHMISVKRLVEYTKLEPEGNLSPNYEDENEIWPVLGKIEFQNTNV 348
+ + ++V N +S++R+ E L E L+ N + P I +N
Sbjct: 568 RSPLNMLPNLLSQVVNANVSLQRIEELL-LSEERILAQN----PPLQPGAPAISIKNGYF 622
Query: 349 RY---LSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAEVEGVIKIDDIDTE 405
+ S P + ++N+ I + IVG TG GK+SLI+A+ L E + +T
Sbjct: 623 SWDSKTSKP-TLSDINLEIPVGSLVAIVGGTGEGKTSLISAM--LGE------LSHAETS 673
Query: 406 DVPLSKLRSNISIIPQDPVLFSGTLRKNLDPFEKYPDYVLWTALQEVELKDMIMEGAGLN 465
V +R +++ +PQ +F+ T+R+N+ + W A+ L+ + G +
Sbjct: 674 SV---VIRGSVAYVPQVSWIFNATVRENILFGSDFESERYWRAIDVTALQHDLDLLPGRD 730
Query: 466 MT-VYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATANVDPKT-----DLLIQRTIRK 519
+T + E G N S GQ+Q + +ARA+ N+ I + D+ + +D D ++ ++
Sbjct: 731 LTEIGERGVNISGGQKQRVSMARAVYSNSDIYIFDDPLSALDAHVAHQVFDSCMKDELKG 790
Query: 520 KFADCTVLTIAHRLHTIMDSDKVLVMDSGV-------AVVSSFGFFFSKDLIEGTVSAKV 572
K T + + ++LH + D+++++ G+ A +S G F K L+E + K+
Sbjct: 791 K----TRVLVTNQLHFLPLMDRIILVSEGMIKEEGTFAELSKSGSLFKK-LMEN--AGKM 843
Query: 573 LSSRKRREKEDRI 585
++++ ++ I
Sbjct: 844 DATQEVNTNDENI 856
>gnl|CDD|233335 TIGR01271, CFTR_protein, cystic fibrosis transmembrane conductor
regulator (CFTR). The model describes the cystis
fibrosis transmembrane conductor regulator (CFTR) in
eukaryotes. The principal role of this protein is
chloride ion conductance. The protein is predicted to
consist of 12 transmembrane domains. Mutations or lesions
in the genetic loci have been linked to the aetiology of
asthma, bronchiectasis, chronic obstructive pulmonary
disease etc. Disease-causing mutations have been studied
by 36Cl efflux assays in vitro cell cultures and
electrophysiology, all of which point to the impairment
of chloride channel stability and not the biosynthetic
processing per se [Transport and binding proteins,
Anions].
Length = 1490
Score = 326 bits (837), Expect = 6e-98
Identities = 169/505 (33%), Positives = 278/505 (55%), Gaps = 19/505 (3%)
Query: 61 STESY--IGIYFSLIVGLFVAGISRSTAFYSACMRCSKGIHKKMFEAVVYSPLAFFSTNP 118
T +Y IY + G R + SK +H++M +V+ +P+A +T
Sbjct: 921 PTSAYYIFYIYVGTADSVLALGFFRGLPLVHTLLTVSKRLHEQMLHSVLQAPMAVLNTMK 980
Query: 119 SGRILNRFSKDMGAVDEVLPKAMLDAAQGVMQVSGALIVSLSVNPLFSIPVLILLYLFWR 178
+GRILNRF+KDM +D++LP + D Q + V GA+ V + P I + + +F
Sbjct: 981 AGRILNRFTKDMAIIDDMLPLTLFDFIQLTLIVLGAIFVVSVLQPYIFIAAIPVAVIFIM 1040
Query: 179 LSKAYLRTSKSLKYLEGVTRSPVFTHLNACLHGLPTIRAHGAAKILVEEFDYHQDLHSST 238
L +LRTS+ LK LE RSP+F+HL L GL TIRA G F +LH++
Sbjct: 1041 LRAYFLRTSQQLKQLESEARSPIFSHLITSLKGLWTIRAFGRQSYFETLFHKALNLHTAN 1100
Query: 239 WHLFVYTNMGFAYLIDFLCLLYLSTI-LISFFFFADIGGKVGLAVTQTMTLMGVVQWAMR 297
W L++ T F ID + + + + I+ D G+VG+ +T M ++ +QWA+
Sbjct: 1101 WFLYLSTLRWFQMRIDIIFVFFFIAVTFIAIGTNQDGEGEVGIILTLAMNILSTLQWAVN 1160
Query: 298 QAAEVENHMISVKRLVEYTKLEPEG----------NLSPNYEDEN----EIWPVLGKIEF 343
+ +V+ M SV R+ ++ L E LS EN + WP G+++
Sbjct: 1161 SSIDVDGLMRSVSRVFKFIDLPQEEPRPSGGGGKYQLSTVLVIENPHAQKCWPSGGQMDV 1220
Query: 344 QNTNVRYLSGPR-VIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAEVEGVIKIDDI 402
Q +Y R V+++L+ ++ +++G++GRTG+GKS+L++A+ RL EG I+ID +
Sbjct: 1221 QGLTAKYTEAGRAVLQDLSFSVEGGQRVGLLGRTGSGKSTLLSALLRLLSTEGEIQIDGV 1280
Query: 403 DTEDVPLSKLRSNISIIPQDPVLFSGTLRKNLDPFEKYPDYVLWTALQEVELKDMIMEGA 462
V L R +IPQ +FSGT RKNLDP+E++ D +W +EV LK +I +
Sbjct: 1281 SWNSVTLQTWRKAFGVIPQKVFIFSGTFRKNLDPYEQWSDEEIWKVAEEVGLKSVIEQFP 1340
Query: 463 G-LNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATANVDPKTDLLIQRTIRKKF 521
L+ + +GG S G +QL+CLAR+I+ IL+LDE +A++DP T +I++T+++ F
Sbjct: 1341 DKLDFVLVDGGYVLSNGHKQLMCLARSILSKAKILLLDEPSAHLDPVTLQIIRKTLKQSF 1400
Query: 522 ADCTVLTIAHRLHTIMDSDKVLVMD 546
++CTV+ HR+ +++ + LV++
Sbjct: 1401 SNCTVILSEHRVEALLECQQFLVIE 1425
Score = 71.1 bits (174), Expect = 1e-12
Identities = 57/207 (27%), Positives = 99/207 (47%), Gaps = 17/207 (8%)
Query: 346 TNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIF-RLAEVEGVIKIDDIDT 404
+N P V+KN++ + + + + G TG+GKSSL+ I L EG IK
Sbjct: 432 SNFSLYVTP-VLKNISFKLEKGQLLAVAGSTGSGKSSLLMMIMGELEPSEGKIKHS---- 486
Query: 405 EDVPLSKLRSNISIIPQDPVLFSGTLRKNLDPFEKYPDYVLWTALQEVELKDMIMEGAGL 464
IS PQ + GT++ N+ Y +Y + ++ +L++ I
Sbjct: 487 ---------GRISFSPQTSWIMPGTIKDNIIFGLSYDEYRYTSVIKACQLEEDIALFPEK 537
Query: 465 NMTVY-EGGTNFSVGQRQLICLARAIVRNNVILVLDEATANVDPKTDLLI-QRTIRKKFA 522
+ TV EGG S GQR I LARA+ ++ + +LD ++D T+ I + + K +
Sbjct: 538 DKTVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFTHLDVVTEKEIFESCLCKLMS 597
Query: 523 DCTVLTIAHRLHTIMDSDKVLVMDSGV 549
+ T + + +L + +DK+L++ GV
Sbjct: 598 NKTRILVTSKLEHLKKADKILLLHEGV 624
>gnl|CDD|240327 PTZ00243, PTZ00243, ABC transporter; Provisional.
Length = 1560
Score = 318 bits (816), Expect = 5e-95
Identities = 184/534 (34%), Positives = 287/534 (53%), Gaps = 51/534 (9%)
Query: 60 LSTESYIGIYFSLIVGLFVAGIS-RSTAFYSACMRCSKGIHKKMFEAVVYSPLAFFSTNP 118
LS +Y+ +Y IV L + R Y A R S+ +H+ + +V ++FF T P
Sbjct: 995 LSAATYLYVYL-GIVLLGTFSVPLRFFLSYEAMRRGSRNMHRDLLRSVSRGTMSFFDTTP 1053
Query: 119 SGRILNRFSKDMGAVDEVLPKAMLDAAQGVMQVSGALIVSLSVNPLFSIPVLILLYLFWR 178
GRILNRFS+D+ +D LP + L Q + + +++V+ + P + ++ YL++R
Sbjct: 1054 LGRILNRFSRDIDILDNTLPMSYLYLLQCLFSICSSILVTSASQPFVLVALVPCGYLYYR 1113
Query: 179 LSKAYLRTSKSLKYLEGVTRSPVFTHLNACLHGLPTIRAHGAAKILVEEFDYHQDLHSST 238
L + Y ++ ++ ++ V +SPVFT L L G TI A+G A ++++E D+ S
Sbjct: 1114 LMQFYNSANREIRRIKSVAKSPVFTLLEEALQGSATITAYGKAHLVMQEALRRLDVVYSC 1173
Query: 239 WHLFVYTNMGFAYLIDFLCLLYLSTILISFFFFADIGGK-----------VGLAVTQTMT 287
+L N ++FL S I+++ + G V L++T M
Sbjct: 1174 SYLENVANRWLGVRVEFL-----SNIVVTVIALIGVIGTMLRATSQEIGLVSLSLTMAMQ 1228
Query: 288 LMGVVQWAMRQAAEVENHMISVKRLVEYT----------------KLEPEGNLSPNYEDE 331
+ W +RQ A VE M SV+RL+ YT LE ++ +
Sbjct: 1229 TTATLNWLVRQVATVEADMNSVERLLYYTDEVPHEDMPELDEEVDALERRTGMAADVTGT 1288
Query: 332 NEIWPV-----------LGKIEFQNTNVRYLSG-PRVIKNLNITIHPKEKIGIVGRTGAG 379
I P G + F+ +RY G P V++ ++ I P+EK+GIVGRTG+G
Sbjct: 1289 VVIEPASPTSAAPHPVQAGSLVFEGVQMRYREGLPLVLRGVSFRIAPREKVGIVGRTGSG 1348
Query: 380 KSSLIAAIFRLAEV-EGVIKIDDIDTEDVPLSKLRSNISIIPQDPVLFSGTLRKNLDPF- 437
KS+L+ R+ EV G I+++ + L +LR S+IPQDPVLF GT+R+N+DPF
Sbjct: 1349 KSTLLLTFMRMVEVCGGEIRVNGREIGAYGLRELRRQFSMIPQDPVLFDGTVRQNVDPFL 1408
Query: 438 EKYPDYVLWTALQEVELKDMIM-EGAGLNMTVYEGGTNFSVGQRQLICLARAIV-RNNVI 495
E V W AL+ V L++ + E G++ V EGG+N+SVGQRQL+C+ARA++ + +
Sbjct: 1409 EASSAEV-WAALELVGLRERVASESEGIDSRVLEGGSNYSVGQRQLMCMARALLKKGSGF 1467
Query: 496 LVLDEATANVDPKTDLLIQRTIRKKFADCTVLTIAHRLHTIMDSDKVLVMDSGV 549
+++DEATAN+DP D IQ T+ F+ TV+TIAHRLHT+ DK++VMD G
Sbjct: 1468 ILMDEATANIDPALDRQIQATVMSAFSAYTVITIAHRLHTVAQYDKIIVMDHGA 1521
Score = 61.3 bits (149), Expect = 1e-09
Identities = 58/240 (24%), Positives = 122/240 (50%), Gaps = 19/240 (7%)
Query: 346 TNVRYLSGPRVI-KNLNITIHPKEKIGIV-GRTGAGKSSLIAAIFRLAEV-EGVIKIDDI 402
T+ + P+V+ +++++++ P+ K+ +V G TG+GKS+L+ ++ E+ EG + +
Sbjct: 664 TDDFFELEPKVLLRDVSVSV-PRGKLTVVLGATGSGKSTLLQSLLSQFEISEGRVWAE-- 720
Query: 403 DTEDVPLSKLRSNISIIPQDPVLFSGTLRKNLDPFEKYPDYVLWTALQEVELK-DMIMEG 461
RS I+ +PQ + + T+R N+ F++ L A++ +L+ D+ G
Sbjct: 721 ----------RS-IAYVPQQAWIMNATVRGNILFFDEEDAARLADAVRVSQLEADLAQLG 769
Query: 462 AGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATANVDPKT-DLLIQRTIRKK 520
GL + E G N S GQ+ + LARA+ N + +LD+ + +D + +++
Sbjct: 770 GGLETEIGEKGVNLSGGQKARVSLARAVYANRDVYLLDDPLSALDAHVGERVVEECFLGA 829
Query: 521 FADCTVLTIAHRLHTIMDSDKVLVMDSGVAVVSSFGFFFSKDLIEGTVSAKVLSSRKRRE 580
A T + H++H + +D V+ + G S F + + T++A++ ++ +E
Sbjct: 830 LAGKTRVLATHQVHVVPRADYVVALGDGRVEFSGSSADFMRTSLYATLAAELKENKDSKE 889
>gnl|CDD|224055 COG1132, MdlB, ABC-type multidrug transport system, ATPase and
permease components [Defense mechanisms].
Length = 567
Score = 286 bits (734), Expect = 4e-89
Identities = 138/495 (27%), Positives = 237/495 (47%), Gaps = 12/495 (2%)
Query: 64 SYIGIYFSLIVGLFVAGISRSTAFYSACMRCSKGIHKKMFEAVVYSPLAFFSTNPSGRIL 123
+ + L + V +S + + + +FE ++ PL+FF SG ++
Sbjct: 53 ELLLLLLLLALLGGVLRALQSYLGSRLGQKIVADLRRDLFEKLLRLPLSFFDKAKSGDLI 112
Query: 124 NRFSKDMGAVDEVLPKAMLDAAQGVMQVSGALIVSLSVNPLFSIPVLILLYLFWRLSKAY 183
+R + D+ AV ++ ++ ++ + G+L++ S++ ++ +L++L L +
Sbjct: 113 SRLTNDVEAVSNLVSTVLVLVFTSILLLIGSLVLLFSLSWRLALILLLILPLLALVLSLL 172
Query: 184 LRTSKSLKYLEGVTRSPVFTHLNACLHGLPTIRAHGAAKILVEEFDYHQDLHSSTWHLFV 243
R S+ L + L L G+ I+A GA ++ F+ +
Sbjct: 173 ARKSRKLSRRVREALGELNARLLESLSGIRVIKAFGAEDRELKRFEEANEELRRANLRAS 232
Query: 244 YTNMGFAYLIDFLCLLYLSTILISFFFFADIG----GKVGLAVTQTMTLMGVVQWAMRQA 299
A L+ L L +L F G G + + + L+ +
Sbjct: 233 RLEALLAPLMLLLSSLGTVLVLALGGFLVLSGSLTVGALAAFILYLLRLLTPILQLGEVV 292
Query: 300 AEVENHMISVKRLVEYTKLEPEGNLSPNYEDENEIWPVLGKIEFQNTNVRYLSGPRVIKN 359
+ ++ + +RL E EPE + + + +G IEF+N + Y V+K+
Sbjct: 293 SLLQRASAAAERLFELLDEEPEVE-----DPPDPLKDTIGSIEFENVSFSYPGKKPVLKD 347
Query: 360 LNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAEV-EGVIKIDDIDTEDVPLSKLRSNISI 418
++ +I P EK+ IVG +G+GKS+LI + RL + G I ID ID D+ L LR I I
Sbjct: 348 ISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDPTSGEILIDGIDIRDISLDSLRKRIGI 407
Query: 419 IPQDPVLFSGTLRKNLDPFEKY-PDYVLWTALQEVELKDMIME-GAGLNMTVYEGGTNFS 476
+ QDP+LFSGT+R+N+ D + AL+ + I G + V E G N S
Sbjct: 408 VSQDPLLFSGTIRENIALGRPDATDEEIEEALKLANAHEFIANLPDGYDTIVGERGVNLS 467
Query: 477 VGQRQLICLARAIVRNNVILVLDEATANVDPKTDLLIQRTIRKKFADCTVLTIAHRLHTI 536
GQRQ + +ARA++RN IL+LDEAT+ +D +T+ LIQ ++K T L IAHRL TI
Sbjct: 468 GGQRQRLAIARALLRNPPILILDEATSALDTETEALIQDALKKLLKGRTTLIIAHRLSTI 527
Query: 537 MDSDKVLVMDSGVAV 551
++D+++V+D+G V
Sbjct: 528 KNADRIIVLDNGRIV 542
>gnl|CDD|213269 cd03369, ABCC_NFT1, ATP-binding cassette domain 2 of NFT1,
subfamily C. Domain 2 of NFT1 (New full-length MRP-type
transporter 1). NFT1 belongs to the MRP (multidrug
resistance-associated protein) family of ABC
transporters. Some of the MRP members have five
additional transmembrane segments in their N-terminus,
but the function of these additional membrane-spanning
domains is not clear. The MRP was found in the
multidrug-resisting lung cancer cell in which
p-glycoprotein was not overexpressed. MRP exports
glutathione by drug stimulation, as well as, certain
substrates in conjugated forms with anions such as
glutathione, glucuronate, and sulfate.
Length = 207
Score = 270 bits (691), Expect = 2e-87
Identities = 118/216 (54%), Positives = 153/216 (70%), Gaps = 19/216 (8%)
Query: 335 WPVLGKIEFQNTNVRYLSG-PRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAEV 393
WP G+IE +N +VRY P V+KN++ + EKIGIVGRTGAGKS+LI A+FR E
Sbjct: 1 WPEHGEIEVENLSVRYAPDLPPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEA 60
Query: 394 -EGVIKIDDIDTEDVPLSKLRSNISIIPQDPVLFSGTLRKNLDPFEKYPDYVLWTALQEV 452
EG I+ID ID +PL LRS+++IIPQDP LFSGT+R NLDPF++Y D ++ AL+
Sbjct: 61 EEGKIEIDGIDISTIPLEDLRSSLTIIPQDPTLFSGTIRSNLDPFDEYSDEEIYGALR-- 118
Query: 453 ELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATANVDPKTDLL 512
V EGG N S GQRQL+CLARA+++ +LVLDEATA++D TD L
Sbjct: 119 ---------------VSEGGLNLSQGQRQLLCLARALLKRPRVLVLDEATASIDYATDAL 163
Query: 513 IQRTIRKKFADCTVLTIAHRLHTIMDSDKVLVMDSG 548
IQ+TIR++F + T+LTIAHRL TI+D DK+LVMD+G
Sbjct: 164 IQKTIREEFTNSTILTIAHRLRTIIDYDKILVMDAG 199
>gnl|CDD|213255 cd03288, ABCC_SUR2, ATP-binding cassette domain 2 of the
sulfonylurea receptor SUR. The SUR domain 2. The
sulfonylurea receptor SUR is an ATP binding cassette
(ABC) protein of the ABCC/MRP family. Unlike other ABC
proteins, it has no intrinsic transport function,
neither active nor passive, but associates with the
potassium channel proteins Kir6.1 or Kir6.2 to form the
ATP-sensitive potassium (K(ATP)) channel. Within the
channel complex, SUR serves as a regulatory subunit that
fine-tunes the gating of Kir6.x in response to
alterations in cellular metabolism. It constitutes a
major pharmaceutical target as it binds numerous drugs,
K(ATP) channel openers and blockers, capable of up- or
down-regulating channel activity.
Length = 257
Score = 227 bits (579), Expect = 3e-70
Identities = 110/216 (50%), Positives = 151/216 (69%), Gaps = 3/216 (1%)
Query: 339 GKIEFQNTNVRYLSGPR-VIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAEV-EGV 396
G+I+ + VRY + + V+K++ I P +K+GI GRTG+GKSSL A FR+ ++ +G
Sbjct: 18 GEIKIHDLCVRYENNLKPVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIFDGK 77
Query: 397 IKIDDIDTEDVPLSKLRSNISIIPQDPVLFSGTLRKNLDPFEKYPDYVLWTALQEVELKD 456
I ID ID +PL LRS +SII QDP+LFSG++R NLDP K D LW AL+ +LK+
Sbjct: 78 IVIDGIDISKLPLHTLRSRLSIILQDPILFSGSIRFNLDPECKCTDDRLWEALEIAQLKN 137
Query: 457 MIME-GAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATANVDPKTDLLIQR 515
M+ GL+ V EGG NFSVGQRQL CLARA VR + IL++DEATA++D T+ ++Q+
Sbjct: 138 MVKSLPGGLDAVVTEGGENFSVGQRQLFCLARAFVRKSSILIMDEATASIDMATENILQK 197
Query: 516 TIRKKFADCTVLTIAHRLHTIMDSDKVLVMDSGVAV 551
+ FAD TV+TIAHR+ TI+D+D VLV+ G+ V
Sbjct: 198 VVMTAFADRTVVTIAHRVSTILDADLVLVLSRGILV 233
>gnl|CDD|213221 cd03254, ABCC_Glucan_exporter_like, ATP-binding cassette domain of
glucan transporter and related proteins, subfamily C.
Glucan exporter ATP-binding protein. In A. tumefaciens
cyclic beta-1, 2-glucan must be transported into the
periplasmic space to exert its action as a virulence
factor. This subfamily belongs to the MRP-like family
and is involved in drug, peptide, and lipid export. The
MRP-like family, similar to all ABC proteins, have a
common four-domain core structure constituted by two
membrane-spanning domains each composed of six
transmembrane (TM) helices and two nucleotide-binding
domains (NBD). ABC transporters are a subset of
nucleotide hydrolases that contain a signature motif,
Q-loop, and H-loop/switch region, in addition to, the
Walker A motif/P-loop and Walker B motif commonly found
in a number of ATP- and GTP-binding and hydrolyzing
proteins.
Length = 229
Score = 216 bits (553), Expect = 1e-66
Identities = 89/213 (41%), Positives = 128/213 (60%), Gaps = 3/213 (1%)
Query: 339 GKIEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAEVE-GVI 397
G+IEF+N N Y V+K++N +I P E + IVG TGAGK++LI + R + + G I
Sbjct: 1 GEIEFENVNFSYDEKKPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQI 60
Query: 398 KIDDIDTEDVPLSKLRSNISIIPQDPVLFSGTLRKNLDPFEKYPDYVLWT-ALQEVELKD 456
ID ID D+ LRS I ++ QD LFSGT+ +N+ A +E D
Sbjct: 61 LIDGIDIRDISRKSLRSMIGVVLQDTFLFSGTIMENIRLGRPNATDEEVIEAAKEAGAHD 120
Query: 457 MIMEGA-GLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATANVDPKTDLLIQR 515
IM+ G + + E G N S G+RQL+ +ARA++R+ IL+LDEAT+N+D +T+ LIQ
Sbjct: 121 FIMKLPNGYDTVLGENGGNLSQGERQLLAIARAMLRDPKILILDEATSNIDTETEKLIQE 180
Query: 516 TIRKKFADCTVLTIAHRLHTIMDSDKVLVMDSG 548
+ K T + IAHRL TI ++DK+LV+D G
Sbjct: 181 ALEKLMKGRTSIIIAHRLSTIKNADKILVLDDG 213
>gnl|CDD|213195 cd03228, ABCC_MRP_Like, ATP-binding cassette domain of multidrug
resistance protein-like transporters. The MRP
(Multidrug Resistance Protein)-like transporters are
involved in drug, peptide, and lipid export. They belong
to the subfamily C of the ATP-binding cassette (ABC)
superfamily of transport proteins. The ABCC subfamily
contains transporters with a diverse functional spectrum
that includes ion transport, cell surface receptor, and
toxin secretion activities. The MRP-like family, similar
to all ABC proteins, have a common four-domain core
structure constituted by two membrane-spanning domains,
each composed of six transmembrane (TM) helices, and two
nucleotide-binding domains (NBD). ABC transporters are a
subset of nucleotide hydrolases that contain a signature
motif, Q-loop, and H-loop/switch region, in addition to,
the Walker A motif/P-loop and Walker B motif commonly
found in a number of ATP- and GTP-binding and
hydrolyzing proteins.
Length = 171
Score = 203 bits (520), Expect = 1e-62
Identities = 82/210 (39%), Positives = 120/210 (57%), Gaps = 42/210 (20%)
Query: 341 IEFQNTNVRYLSGPR-VIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAEV-EGVIK 398
IEF+N + Y P+ V+K++++TI P EK+ IVG +G+GKS+L+ + RL + G I
Sbjct: 1 IEFKNVSFSYPGRPKPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEIL 60
Query: 399 IDDIDTEDVPLSKLRSNISIIPQDPVLFSGTLRKNLDPFEKYPDYVLWTALQEVELKDMI 458
ID +D D+ L LR NI+ +PQDP LFSGT+R+N+
Sbjct: 61 IDGVDLRDLDLESLRKNIAYVPQDPFLFSGTIRENI------------------------ 96
Query: 459 MEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATANVDPKTDLLIQRTIR 518
S GQRQ I +ARA++R+ IL+LDEAT+ +DP+T+ LI +R
Sbjct: 97 ----------------LSGGQRQRIAIARALLRDPPILILDEATSALDPETEALILEALR 140
Query: 519 KKFADCTVLTIAHRLHTIMDSDKVLVMDSG 548
TV+ IAHRL TI D+D+++V+D G
Sbjct: 141 ALAKGKTVIVIAHRLSTIRDADRIIVLDDG 170
>gnl|CDD|225183 COG2274, SunT, ABC-type bacteriocin/lantibiotic exporters, contain
an N-terminal double-glycine peptidase domain [Defense
mechanisms].
Length = 709
Score = 202 bits (516), Expect = 1e-56
Identities = 134/538 (24%), Positives = 247/538 (45%), Gaps = 62/538 (11%)
Query: 43 FFKIVNNTINQHHHFHLLSTESYIGIYFSL-IVGLFVAGISRSTAFYSACMRCSKGIHKK 101
F +IV + + L+ + I L + + + R+ R + +
Sbjct: 176 FSQIVIDKVLPDASRSTLT---VLAIGLLLAALFEALLRLLRTYLIAHLGKRLDLELSGR 232
Query: 102 MFEAVVYSPLAFFSTNPSGRILNRFSKDMGAVDEVL----PKAMLDAAQGVMQVSGALIV 157
F ++ PL++F G I++R ++ + E L ++D + + A++
Sbjct: 233 FFRHLLRLPLSYFEKRSVGEIISRVR-ELEQIREFLTGSILTLIIDLLFAL--IFLAVMF 289
Query: 158 SLSVN----PLFSIPVLILL-YLFWRLSKAYLRTSKSLKYLEGVTRSPVFTHLNACLHGL 212
S L +IP+ +L+ +F L + K+ K +E + L + G+
Sbjct: 290 LYSWKLTLIVLAAIPLNVLITLIFQPLLRR-----KTRKLIEESAE--QQSFLVETIKGI 342
Query: 213 PTIRAHGAAKILVEEFD-YHQDLHSSTW-----HLFVYTNMGFAYLIDFLCLLYLSTILI 266
T++A A ++D + + L + T + + +L+ IL+
Sbjct: 343 ETVKALAAEPRFRSQWDNRLAKQVNIGFKTEKLALILNTIKSLLQQLSSVLILWFGAILV 402
Query: 267 --------SFFFFADIGGKVGLAVTQTMTLMGVVQWAMRQAAEVENHMISVKRLVE--YT 316
F + G +T+ L + + + ++++RL + T
Sbjct: 403 LEGELTLGQLVAFNMLAGYFISPITR---LSQLWT-------DFQQAKVALERLGDILDT 452
Query: 317 KLEPEGNLSPNYEDENEIWPVLGKIEFQNTNVRYL-SGPRVIKNLNITIHPKEKIGIVGR 375
E EG+ + + + G+IEF+N + RY P V+++L++ I P EK+ IVGR
Sbjct: 453 PPEQEGDKTLI-----HLPKLQGEIEFENVSFRYGPDDPPVLEDLSLEIPPGEKVAIVGR 507
Query: 376 TGAGKSSLIAAIFRLAEVE-GVIKIDDIDTEDVPLSKLRSNISIIPQDPVLFSGTLRKNL 434
+G+GKS+L+ + L + + G I +D +D D+ L+ LR + + QDP LFSG++R+N+
Sbjct: 508 SGSGKSTLLKLLLGLYKPQQGRILLDGVDLNDIDLASLRRQVGYVLQDPFLFSGSIRENI 567
Query: 435 ---DPFEKYPDYVLWTALQEVELKDMIME-GAGLNMTVYEGGTNFSVGQRQLICLARAIV 490
+P + + A Q + I G + V EGG N S GQRQ + LARA++
Sbjct: 568 ALGNPEATDEE--IIEAAQLAGAHEFIENLPMGYDTPVGEGGANLSGGQRQRLALARALL 625
Query: 491 RNNVILVLDEATANVDPKTDLLIQRTIRKKFADCTVLTIAHRLHTIMDSDKVLVMDSG 548
IL+LDEAT+ +DP+T+ +I + + + TV+ IAHRL TI +D+++V+D G
Sbjct: 626 SKPKILLLDEATSALDPETEAIILQNLLQILQGRTVIIIAHRLSTIRSADRIIVLDQG 683
>gnl|CDD|213256 cd03289, ABCC_CFTR2, ATP-binding cassette domain 2 of
CFTR,subfamily C. The cystic fibrosis transmembrane
regulator (CFTR), the product of the gene mutated in
patients with cystic fibrosis, has adapted the ABC
transporter structural motif to form a tightly regulated
anion channel at the apical surface of many epithelia.
Use of the term assembly of a functional ion channel
implies the coming together of subunits or at least
smaller not-yet functional components of the active
whole. In fact, on the basis of current knowledge only
the CFTR polypeptide itself is required to form an ATP-
and protein kinase A-dependent low-conductance chloride
channel of the type present in the apical membrane of
many epithelial cells. CFTR displays the typical
organization (IM-ABC)2 and carries a characteristic
hydrophilic R-domain that separates IM1-ABC1 from
IM2-ABC2.
Length = 275
Score = 188 bits (478), Expect = 3e-55
Identities = 83/212 (39%), Positives = 138/212 (65%), Gaps = 2/212 (0%)
Query: 339 GKIEFQNTNVRYL-SGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAEVEGVI 397
G++ ++ +Y G V++N++ +I P +++G++GRTG+GKS+L++A RL EG I
Sbjct: 1 GQMTVKDLTAKYTEGGNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLNTEGDI 60
Query: 398 KIDDIDTEDVPLSKLRSNISIIPQDPVLFSGTLRKNLDPFEKYPDYVLWTALQEVELKDM 457
+ID + VPL K R +IPQ +FSGT RKNLDP+ K+ D +W +EV LK +
Sbjct: 61 QIDGVSWNSVPLQKWRKAFGVIPQKVFIFSGTFRKNLDPYGKWSDEEIWKVAEEVGLKSV 120
Query: 458 IMEGAG-LNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATANVDPKTDLLIQRT 516
I + G L+ + +GG S G +QL+CLAR+++ IL+LDE +A++DP T +I++T
Sbjct: 121 IEQFPGQLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPITYQVIRKT 180
Query: 517 IRKKFADCTVLTIAHRLHTIMDSDKVLVMDSG 548
+++ FADCTV+ HR+ +++ + LV++
Sbjct: 181 LKQAFADCTVILSEHRIEAMLECQRFLVIEEN 212
>gnl|CDD|227321 COG4988, CydD, ABC-type transport system involved in cytochrome bd
biosynthesis, ATPase and permease components [Energy
production and conversion / Posttranslational
modification, protein turnover, chaperones].
Length = 559
Score = 192 bits (490), Expect = 6e-54
Identities = 127/534 (23%), Positives = 223/534 (41%), Gaps = 70/534 (13%)
Query: 54 HHHFHLLSTESYIGIYFSLIVGLFVAGIS---RSTAFYSACMRCSKGIHKKMFEAVVYSP 110
+S + + L++ L + R Y A + + + + + +
Sbjct: 28 TKLIEGQLFQSLLPLLILLLIALVLRAFLAWLRERLGYRAAAKVRASLRQLVLDKLAKLG 87
Query: 111 LAFFSTNPSGRILNRFSKDMGAVDE----VLPKAMLDAAQGVMQVSGALIVSL----SVN 162
AF + P+G + + ++ LP+ L + IV L ++
Sbjct: 88 PAFIAQKPAGSAATLALEGIEQLEPYYARYLPQMFL-----------SAIVPLLILIAIF 136
Query: 163 PLFSIPVLILLY------LFWRL--SKAYLRTSKSLKYLEGVTRSPVFTHLNACLHGLPT 214
LILL LF L A + K L ++ H L GL T
Sbjct: 137 FFNWAAALILLITAPLIPLFMILVGLAAKDASEKQFSALARLS-----GHFLDRLRGLET 191
Query: 215 IRAHGAAKILVEEFDYH-QDLHSSTWHLFVYTNMGFAYL----IDFLCLLYLSTILISFF 269
+RA G + E +D +T + + A+L ++F YLS L++ +
Sbjct: 192 LRAFGRTEATEERIRKDSEDFRKATMSV-----LRIAFLSSAVLEFFA--YLSIALVAVY 244
Query: 270 F-FADIG-GKVGLA-----------VTQTMTLMGVVQWAMRQAAEVENHMISVKRLVEYT 316
F +G G + L Q + +G + A E + +L
Sbjct: 245 IGFRLLGEGDLTLFAGLFVLILAPEFFQPLRDLGSF-FHAAAAGEA-----AADKLFTLL 298
Query: 317 KLEPEGNLSPNYEDENEIWPVLGKIEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRT 376
+ + E +I +N + RY G + +LN+TI + +VG +
Sbjct: 299 ESPVATP--GSGEKAEVANEPPIEISLENLSFRYPDGKPALSDLNLTIKAGQLTALVGAS 356
Query: 377 GAGKSSLIAAIF-RLAEVEGVIKIDDIDTEDVPLSKLRSNISIIPQDPVLFSGTLRKNLD 435
GAGKS+L+ + LA +G I+++ ID D+ R IS + Q+P LF+GT+R+N+
Sbjct: 357 GAGKSTLLNLLLGFLAPTQGEIRVNGIDLRDLSPEAWRKQISWVSQNPYLFAGTIRENIL 416
Query: 436 PFE-KYPDYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNV 494
D + AL + L + + + GL+ + EGG S GQ Q + LARA++
Sbjct: 417 LARPDASDEEIIAALDQAGLLEFVPKPDGLDTVIGEGGAGLSGGQAQRLALARALLSPAS 476
Query: 495 ILVLDEATANVDPKTDLLIQRTIRKKFADCTVLTIAHRLHTIMDSDKVLVMDSG 548
+L+LDE TA++D +T+ +I + +++ TVL I HRL D+D+++V+D+G
Sbjct: 477 LLLLDEPTAHLDAETEQIILQALQELAKQKTVLVITHRLEDAADADRIVVLDNG 530
>gnl|CDD|213218 cd03251, ABCC_MsbA, ATP-binding cassette domain of the bacterial
lipid flippase and related proteins, subfamily C. MsbA
is an essential ABC transporter, closely related to
eukaryotic MDR proteins. ABC transporters are a large
family of proteins involved in the transport of a wide
variety of different compounds, like sugars, ions,
peptides, and more complex organic molecules. The
nucleotide binding domain shows the highest similarity
between all members of the family. ABC transporters are
a subset of nucleotide hydrolases that contain a
signature motif, Q-loop, and H-loop/switch region, in
addition to, the Walker A motif/P-loop and Walker B
motif commonly found in a number of ATP- and GTP-binding
and hydrolyzing proteins.
Length = 234
Score = 171 bits (435), Expect = 1e-49
Identities = 74/213 (34%), Positives = 123/213 (57%), Gaps = 6/213 (2%)
Query: 341 IEFQNTNVRYLS-GPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAEV-EGVIK 398
+EF+N RY GP V++++++ I E + +VG +G+GKS+L+ I R +V G I
Sbjct: 1 VEFKNVTFRYPGDGPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRIL 60
Query: 399 IDDIDTEDVPLSKLRSNISIIPQDPVLFSGTLRKNL--DPFEKYPDYVLWTALQEVELKD 456
ID D D L+ LR I ++ QD LF+ T+ +N+ + V A + +
Sbjct: 61 IDGHDVRDYTLASLRRQIGLVSQDVFLFNDTVAENIAYGRPGATREEVE-EAARAANAHE 119
Query: 457 MIME-GAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATANVDPKTDLLIQR 515
IME G + + E G S GQRQ I +ARA++++ IL+LDEAT+ +D +++ L+Q
Sbjct: 120 FIMELPEGYDTVIGERGVKLSGGQRQRIAIARALLKDPPILILDEATSALDTESERLVQA 179
Query: 516 TIRKKFADCTVLTIAHRLHTIMDSDKVLVMDSG 548
+ + + T IAHRL TI ++D+++V++ G
Sbjct: 180 ALERLMKNRTTFVIAHRLSTIENADRIVVLEDG 212
>gnl|CDD|131258 TIGR02203, MsbA_lipidA, lipid A export permease/ATP-binding protein
MsbA. This family consists of a single polypeptide
chain transporter in the ATP-binding cassette (ABC)
transporter family, MsbA, which exports lipid A. It may
also act in multidrug resistance. Lipid A, a part of
lipopolysaccharide, is found in the outer leaflet of the
outer membrane of most Gram-negative bacteria. Members
of this family are restricted to the Proteobacteria
(although lipid A is more broadly distributed) and often
are clustered with lipid A biosynthesis genes [Cell
envelope, Biosynthesis and degradation of surface
polysaccharides and lipopolysaccharides, Transport and
binding proteins, Other].
Length = 571
Score = 179 bits (456), Expect = 3e-49
Identities = 129/504 (25%), Positives = 222/504 (44%), Gaps = 40/504 (7%)
Query: 72 LIVGLFV-AGISRSTAFYS---ACMRCSKGIHKKMFEAVVYSPLAFFSTNPSGRILNRFS 127
+++GL V GI + Y + + I +MFE ++ P++FF P+G +L+R +
Sbjct: 59 VVIGLAVLRGICSFVSTYLLSWVSNKVVRDIRVRMFEKLLGLPVSFFDRQPTGTLLSRIT 118
Query: 128 KDMGAVDEVLPKAMLDAAQGVMQVSGALIVSLSVNPLFSIPVLILLYLFWRLSKAYLRTS 187
D V A + + + V G IV L + ++ V+++L + L + +
Sbjct: 119 FDSEQVASAATDAFIVLVRETLTVIGLFIVLLYYSWQLTLIVVVMLPVLSILMRRVSKRL 178
Query: 188 KSLKYLEGVTRSPVFTHLNACLHGLPTIRAHGAAKILVEEFDYHQDLHSSTWHLFVYTNM 247
+ + + V T L G ++ G FD + N
Sbjct: 179 RRISKEIQNSMGQVTTVAEETLQGYRVVKLFGGQAYETRRFDAVSN-----------RNR 227
Query: 248 GFAY-----------LIDFLCLLYLSTILISFFFFADIGGKVGLAVTQTMTLMGVVQWAM 296
A + + L L+ +L F A G T +T M + +
Sbjct: 228 RLAMKMTSAGSISSPITQLIASLALAVVLFIALFQAQAGSLTAGDFTAFITAMIALIRPL 287
Query: 297 RQAAEVENHM----ISVKRLVEYTKLEPEGNLSPNYEDENEIWPVLGKIEFQNTNVRYLS 352
+ V M + + L PE + I G +EF+N RY
Sbjct: 288 KSLTNVNAPMQRGLAAAESLFTLLDSPPEKD-----TGTRAIERARGDVEFRNVTFRYPG 342
Query: 353 GPR-VIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAEVE-GVIKIDDIDTEDVPLS 410
R + ++++ I P E + +VGR+G+GKS+L+ I R E + G I +D D D L+
Sbjct: 343 RDRPALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPDSGQILLDGHDLADYTLA 402
Query: 411 KLRSNISIIPQDPVLFSGTLRKNL--DPFEKYPDYVLWTALQEVELKDMIME-GAGLNMT 467
LR ++++ QD VLF+ T+ N+ E+ + AL +D + + GL+
Sbjct: 403 SLRRQVALVSQDVVLFNDTIANNIAYGRTEQADRAEIERALAAAYAQDFVDKLPLGLDTP 462
Query: 468 VYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATANVDPKTDLLIQRTIRKKFADCTVL 527
+ E G S GQRQ + +ARA++++ IL+LDEAT+ +D +++ L+Q + + T L
Sbjct: 463 IGENGVLLSGGQRQRLAIARALLKDAPILILDEATSALDNESERLVQAALERLMQGRTTL 522
Query: 528 TIAHRLHTIMDSDKVLVMDSGVAV 551
IAHRL TI +D+++VMD G V
Sbjct: 523 VIAHRLSTIEKADRIVVMDDGRIV 546
>gnl|CDD|213220 cd03253, ABCC_ATM1_transporter, ATP-binding cassette domain of
iron-sulfur clusters transporter, subfamily C. ATM1 is
an ABC transporter that is expressed in the
mitochondria. Although the specific function of ATM1 is
unknown, its disruption results in the accumulation of
excess mitochondrial iron, loss of mitochondrial
cytochromes, oxidative damage to mitochondrial DNA, and
decreased levels of cytosolic heme proteins. ABC
transporters are a large family of proteins involved in
the transport of a wide variety of different compounds,
like sugars, ions, peptides, and more complex organic
molecules. The nucleotide binding domain shows the
highest similarity between all members of the family.
ABC transporters are a subset of nucleotide hydrolases
that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing proteins.
Length = 236
Score = 170 bits (432), Expect = 5e-49
Identities = 81/215 (37%), Positives = 125/215 (58%), Gaps = 11/215 (5%)
Query: 341 IEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAEV-EGVIKI 399
IEF+N Y G V+K+++ TI +K+ IVG +G+GKS+++ +FR +V G I I
Sbjct: 1 IEFENVTFAYDPGRPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSILI 60
Query: 400 DDIDTEDVPLSKLRSNISIIPQDPVLFSGTLRKNLDPFEKY-----PDYVLWTALQEVEL 454
D D +V L LR I ++PQD VLF+ T+ N+ +Y D + A + ++
Sbjct: 61 DGQDIREVTLDSLRRAIGVVPQDTVLFNDTIGYNI----RYGRPDATDEEVIEAAKAAQI 116
Query: 455 KDMIME-GAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATANVDPKTDLLI 513
D IM G + V E G S G++Q + +ARAI++N IL+LDEAT+ +D T+ I
Sbjct: 117 HDKIMRFPDGYDTIVGERGLKLSGGEKQRVAIARAILKNPPILLLDEATSALDTHTEREI 176
Query: 514 QRTIRKKFADCTVLTIAHRLHTIMDSDKVLVMDSG 548
Q +R T + IAHRL TI+++DK++V+ G
Sbjct: 177 QAALRDVSKGRTTIVIAHRLSTIVNADKIIVLKDG 211
>gnl|CDD|213216 cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassette domain of a
mitochondrial protein MTABC3 and related proteins.
MTABC3 (also known as ABCB6) is a mitochondrial
ATP-binding cassette protein involved in iron
homeostasis and one of four ABC transporters expressed
in the mitochondrial inner membrane, the other three
being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast
MDL1 (multidrug resistance-like protein 1) and MDL2
(multidrug resistance-like protein 2) transporters are
also included in this CD. MDL1 is an ATP-dependent
permease that acts as a high-copy suppressor of ATM1 and
is thought to have a role in resistance to oxidative
stress. Interestingly, subfamily B is more closely
related to the carboxyl-terminal component of subfamily
C than the two halves of ABCC molecules are with one
another.
Length = 238
Score = 167 bits (426), Expect = 4e-48
Identities = 80/220 (36%), Positives = 131/220 (59%), Gaps = 13/220 (5%)
Query: 341 IEFQNTNVRYLSGP--RVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAE-VEGVI 397
IEF+N + RY S P ++K L++TI P + + +VG +G GKS++++ + R + G I
Sbjct: 1 IEFKNVSFRYPSRPDVPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEI 60
Query: 398 KIDDIDTEDVPLSKLRSNISIIPQDPVLFSGTLRKNLDPFEKY-----PDYVLWTALQEV 452
+D +D D+ L LRS I ++ Q+PVLF GT+ +N+ +Y D + A ++
Sbjct: 61 LLDGVDIRDLNLRWLRSQIGLVSQEPVLFDGTIAENI----RYGKPDATDEEVEEAAKKA 116
Query: 453 ELKDMIMEGA-GLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATANVDPKTDL 511
+ D IM G + V E G+ S GQ+Q I +ARA++RN IL+LDEAT+ +D +++
Sbjct: 117 NIHDFIMSLPDGYDTLVGERGSQLSGGQKQRIAIARALLRNPKILLLDEATSALDAESEK 176
Query: 512 LIQRTIRKKFADCTVLTIAHRLHTIMDSDKVLVMDSGVAV 551
L+Q + + T + IAHRL TI ++D + V+ +G V
Sbjct: 177 LVQEALDRAMKGRTTIVIAHRLSTIRNADLIAVLQNGQVV 216
>gnl|CDD|227320 COG4987, CydC, ABC-type transport system involved in cytochrome bd
biosynthesis, fused ATPase and permease components
[Energy production and conversion / Posttranslational
modification, protein turnover, chaperones].
Length = 573
Score = 171 bits (436), Expect = 2e-46
Identities = 126/514 (24%), Positives = 221/514 (42%), Gaps = 44/514 (8%)
Query: 63 ESYIGIYFSLIVGLFVAGISRSTAFY-------SACMRCSKGIHKKMFEAVVYSPLAFFS 115
+YI G+ I R+ A Y A R + ++FE + A
Sbjct: 51 LAYIFNVMLPSAGVRGLAILRTAARYVERLVSHDATFRVLSALRVRLFEKLEPLSPALLL 110
Query: 116 TNPSGRILNRFSKDMGAVDEVLPKAMLDAAQGVMQVSGALIVSLSVNPLFSIP--VLILL 173
SG +LNR D+ A+D + + + A ++ + + + LS FSIP +L+ L
Sbjct: 111 RYRSGDLLNRLVADVDALDNLYLRVIAPAVVALV-LIAVVTIGLS---FFSIPLALLLGL 166
Query: 174 YLFWRL----SKAYLRTSKSLKYLEGVTRSPVFTHLNACLHGLPTIRAHGAAKILVEEFD 229
L L + Y K +L R+ + + + G + GA +
Sbjct: 167 ILLLLLLIIPTLFYRAGRKFGAHLA-QGRAALRSQFTDWVQGQAELLIFGAEDAYRTALE 225
Query: 230 YHQDLHSSTWHLFVYTNMGFAYLIDFLCLLYLSTILISFFFFADIGGKVGLAVTQTMTLM 289
+ +W F L D + LL ++I + G A+ Q +
Sbjct: 226 ATEA----SWLKAQRKQARFTGLSDAILLLIAGLLVIGLLLWMAAQVGAG-ALAQPGAAL 280
Query: 290 GVVQW--------AMRQAA--EVENHMISVKRLVEYTKLEPEGNLSPNYEDENEIWPVLG 339
++ + A + + S +RL + +PE +E G
Sbjct: 281 ALLVIFAALEAFEPLAPGAFQHLGQVIASARRLNDILDQKPEV------TFPDEQTATTG 334
Query: 340 K-IEFQNTNVRYL-SGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAEVE-GV 396
+ +E +N + Y + +KN N+T+ EK+ I+GR+G+GKS+L+ + + + G
Sbjct: 335 QALELRNVSFTYPGQQTKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWDPQQGS 394
Query: 397 IKIDDIDTEDVPLSKLRSNISIIPQDPVLFSGTLRKNLDPFEK-YPDYVLWTALQEVELK 455
I ++ ++ + LR IS++ Q LFSGTLR NL D LW ALQ+V L+
Sbjct: 395 ITLNGVEIASLDEQALRETISVLTQRVHLFSGTLRDNLRLANPDASDEELWAALQQVGLE 454
Query: 456 DMIME-GAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATANVDPKTDLLIQ 514
++ GLN + EGG S G+R+ + LARA++ + + +LDE T +DP T+ +
Sbjct: 455 KLLESAPDGLNTWLGEGGRRLSGGERRRLALARALLHDAPLWLLDEPTEGLDPITERQVL 514
Query: 515 RTIRKKFADCTVLTIAHRLHTIMDSDKVLVMDSG 548
+ + T+L + HRL + D+++V+D+G
Sbjct: 515 ALLFEHAEGKTLLMVTHRLRGLERMDRIIVLDNG 548
>gnl|CDD|233209 TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) Family protein.
[Transport and binding proteins, Other].
Length = 711
Score = 172 bits (439), Expect = 4e-46
Identities = 130/512 (25%), Positives = 229/512 (44%), Gaps = 61/512 (11%)
Query: 72 LIVGLFVAGISRSTAFYSACMRCSKGIHKKMFEAVVYSPLAFFSTNPSGRILNRFSKDMG 131
L + V+ R +F R + I + +F +++ L FF N +G + +R S D
Sbjct: 210 LSIASSVSAGLRGGSFNYTMARINLRIREDLFRSLLRQDLGFFDENKTGELTSRLSSDTQ 269
Query: 132 AVDEVLPKAMLDAAQGVMQVSGALIVSLSVNPLFSIPVLILLYLFWRLSKAY-------- 183
+ L + + ++ + G L L ++P ++ LI L L + K +
Sbjct: 270 TMSRSLSLNVNVLLRNLVMLLGLLGFMLWLSPRLTMVTLINLPLVFLAEKVFGKRYQLLS 329
Query: 184 LRTSKSLKYLEGVTRSPVFTHLNACLHGLPTIRAHGAAKILVEEFDYHQDLHS--STWHL 241
+++ V L G+ T+R+ A + E + + L
Sbjct: 330 EELQEAVAKANQVAEE--------ALSGMRTVRSFAAEE--GEASRFKEALEETLQLNKR 379
Query: 242 FVYTNMGFAYLIDFLCLLYLSTILISFFFFADIGGKVGLAVTQTMTLMGVVQW------- 294
G+ + L +L +L GG+ L +T ++ +V +
Sbjct: 380 KALAYAGYLWTTSVLGMLIQVLVL-------YYGGQ--LVLTGKVSSGNLVSFLLYQEQL 430
Query: 295 --AMRQAAEVENHMIS----VKRLVEYT----KLEPEGNLSPNYEDENEIWPVLGKIEFQ 344
A+R + V + M+ +++ EY + G L+P + G IEFQ
Sbjct: 431 GEAVRVLSYVYSGMMQAVGASEKVFEYLDRKPNIPLTGTLAPL--------NLEGLIEFQ 482
Query: 345 NTNVRYLSGPR--VIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAE-VEGVIKIDD 401
+ + Y + P V+K L T+HP E + +VG +G+GKS++ A + L + G + +D
Sbjct: 483 DVSFSYPNRPDVPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPTGGQVLLDG 542
Query: 402 IDTEDVPLSKLRSNISIIPQDPVLFSGTLRKNLD-PFEKYPDYVLWTALQEVELKDMIME 460
+ L ++++ Q+PVLFSG++R+N+ PD + A + D IME
Sbjct: 543 VPLVQYDHHYLHRQVALVGQEPVLFSGSVRENIAYGLTDTPDEEIMAAAKAANAHDFIME 602
Query: 461 -GAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATANVDPKTDLLIQRTIRK 519
G + V E G+ S GQ+Q I +ARA+VR +L+LDEAT+ +D + + L+Q + +
Sbjct: 603 FPNGYDTEVGEKGSQLSGGQKQRIAIARALVRKPRVLILDEATSALDAECEQLLQES--R 660
Query: 520 KFADCTVLTIAHRLHTIMDSDKVLVMDSGVAV 551
A TVL IAHRL T+ +D++LV+ G V
Sbjct: 661 SRASRTVLLIAHRLSTVERADQILVLKKGSVV 692
>gnl|CDD|213212 cd03245, ABCC_bacteriocin_exporters, ATP-binding cassette domain of
bacteriocin exporters, subfamily C. Many
non-lantibiotic bacteriocins of lactic acid bacteria are
produced as precursors which have N-terminal leader
peptides that share similarities in amino acid sequence
and contain a conserved processing site of two glycine
residues in positions -1 and -2. A dedicated ATP-binding
cassette (ABC) transporter is responsible for the
proteolytic cleavage of the leader peptides and
subsequent translocation of the bacteriocins across the
cytoplasmic membrane.
Length = 220
Score = 155 bits (393), Expect = 1e-43
Identities = 73/227 (32%), Positives = 117/227 (51%), Gaps = 30/227 (13%)
Query: 339 GKIEFQNTNVRYLSGPR-VIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAE-VEGV 396
G+IEF+N + Y + + N+++TI EK+ I+GR G+GKS+L+ + L + G
Sbjct: 1 GRIEFRNVSFSYPNQEIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGS 60
Query: 397 IKIDDIDTEDVPLSKLRSNISIIPQDPVLFSGTLRKNLDPFEKYPDYVLWTALQEVELKD 456
+ +D D + + LR NI +PQD LF GTLR N+ L D
Sbjct: 61 VLLDGTDIRQLDPADLRRNIGYVPQDVTLFYGTLRDNI-------------TLGAPLADD 107
Query: 457 -MIMEGA--------------GLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEA 501
I+ A GL++ + E G S GQRQ + LARA++ + IL+LDE
Sbjct: 108 ERILRAAELAGVTDFVNKHPNGLDLQIGERGRGLSGGQRQAVALARALLNDPPILLLDEP 167
Query: 502 TANVDPKTDLLIQRTIRKKFADCTVLTIAHRLHTIMDSDKVLVMDSG 548
T+ +D ++ ++ +R+ D T++ I HR + D+++VMDSG
Sbjct: 168 TSAMDMNSEERLKERLRQLLGDKTLIIITHRPSLLDLVDRIIVMDSG 214
>gnl|CDD|163508 TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin system ABC
transporter, peptidase/ATP-binding protein. This
protein describes a multidomain ABC transporter subunit
that is one of three protein families associated with
some regularity with a distinctive family of putative
bacteriocins. It includes a bacteriocin-processing
peptidase domain at the N-terminus. Model TIGR03793
describes a conserved propeptide region for this
bacteriocin family, unusual because it shows obvious
homology a region of the enzyme nitrile hydratase up to
the classic Gly-Gly cleavage motif. This family is
therefore predicted to be a subunit of a bacteriocin
processing and export system characteristic to this
system that we designate NHLM, Nitrile Hydratase Leader
Microcin [Transport and binding proteins, Amino acids,
peptides and amines, Cellular processes, Biosynthesis of
natural products].
Length = 710
Score = 165 bits (419), Expect = 2e-43
Identities = 85/270 (31%), Positives = 144/270 (53%), Gaps = 18/270 (6%)
Query: 287 TLMGVVQWAMRQAAEVENHMISVKRLVEYTKLEPEGNLSPNYEDENEIWPVLGKIEFQNT 346
L+G E+E + + ++ + G +E +N
Sbjct: 428 NLVGFGG----TLQELEGDLNRLDDVLRNPVDPLLEEEEAPAAGSEPSPRLSGYVELRNI 483
Query: 347 NVRY-LSGPRVIKNLNITIHPKEKIGIVGRTGAGKSS---LIAAIFRLAEVEGVIKIDDI 402
Y P +I+N ++T+ P +++ +VG +G+GKS+ L+A +++ G I D I
Sbjct: 484 TFGYSPLEPPLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQ--PWSGEILFDGI 541
Query: 403 DTEDVPLSKLRSNISIIPQDPVLFSGTLRKNL---DPFEKYPDYVLWTALQEVELKDMIM 459
E++P L ++++++ QD LF GT+R NL DP PD L A ++ + D+I
Sbjct: 542 PREEIPREVLANSVAMVDQDIFLFEGTVRDNLTLWDP--TIPDADLVRACKDAAIHDVIT 599
Query: 460 E-GAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATANVDPKTDLLIQRTIR 518
G + + EGG N S GQRQ + +ARA+VRN IL+LDEAT+ +DP+T+ +I +R
Sbjct: 600 SRPGGYDAELAEGGANLSGGQRQRLEIARALVRNPSILILDEATSALDPETEKIIDDNLR 659
Query: 519 KKFADCTVLTIAHRLHTIMDSDKVLVMDSG 548
++ CT + +AHRL TI D D+++V++ G
Sbjct: 660 RR--GCTCIIVAHRLSTIRDCDEIIVLERG 687
>gnl|CDD|234189 TIGR03375, type_I_sec_LssB, type I secretion system ATPase, LssB
family. Type I protein secretion is a system in some
Gram-negative bacteria to export proteins (often
proteases) across both inner and outer membranes to the
extracellular medium. This is one of three proteins of
the type I secretion apparatus. Targeted proteins are
not cleaved at the N-terminus, but rather carry signals
located toward the extreme C-terminus to direct type I
secretion. This model is related to models TIGR01842 and
TIGR01846, and to bacteriocin ABC transporters that
cleave their substrates during export [Protein fate,
Protein and peptide secretion and trafficking, Cellular
processes, Pathogenesis].
Length = 694
Score = 160 bits (407), Expect = 8e-42
Identities = 74/214 (34%), Positives = 125/214 (58%), Gaps = 4/214 (1%)
Query: 339 GKIEFQNTNVRYL-SGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAE-VEGV 396
G+IEF+N + Y + N+++TI P EK+ I+GR G+GKS+L+ + L + EG
Sbjct: 462 GEIEFRNVSFAYPGQETPALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPTEGS 521
Query: 397 IKIDDIDTEDVPLSKLRSNISIIPQDPVLFSGTLRKNLDPFEKYP-DYVLWTALQEVELK 455
+ +D +D + + LR NI +PQDP LF GTLR N+ Y D + A + +
Sbjct: 522 VLLDGVDIRQIDPADLRRNIGYVPQDPRLFYGTLRDNIALGAPYADDEEILRAAELAGVT 581
Query: 456 DMI-MEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATANVDPKTDLLIQ 514
+ + GL+M + E G + S GQRQ + LARA++R+ IL+LDE T+ +D +++ +
Sbjct: 582 EFVRRHPDGLDMQIGERGRSLSGGQRQAVALARALLRDPPILLLDEPTSAMDNRSEERFK 641
Query: 515 RTIRKKFADCTVLTIAHRLHTIMDSDKVLVMDSG 548
+++ A T++ + HR + D+++VMD+G
Sbjct: 642 DRLKRWLAGKTLVLVTHRTSLLDLVDRIIVMDNG 675
>gnl|CDD|234033 TIGR02857, CydD, thiol reductant ABC exporter, CydD subunit. The
gene pair cydCD encodes an ABC-family transporter in
which each gene contains an N-terminal membrane-spanning
domain (pfam00664) and a C-terminal ATP-binding domain
(pfam00005). In E. coli these genes were discovered as
mutants which caused the terminal heme-copper oxidase
complex cytochrome bd to fail to assemble. Recent work
has shown that the transporter is involved in export of
redox-active thiol compounds such as cysteine and
glutathione. The linkage to assembly of the cytochrome
bd complex is further supported by the conserved operon
structure found outside the gammaproteobacteria
(cydABCD) containing both the transporter and oxidase
genes components. The genes used as the seed members for
this model are all either found in the
gammproteobacterial context or the CydABCD context. All
members of this family scoring above trusted at the time
of its creation were from genomes which encode a
cytochrome bd complex. Unfortunately, the gene symbol
nomenclature adopted based on this operon in B. subtilis
assigns cydC to the third gene in the operon where this
gene is actually homologous to the E. coli cydD gene. We
have chosen to name all homologs in this family in
accordance with the precedence of publication of the E.
coli name, CydD.
Length = 529
Score = 155 bits (395), Expect = 4e-41
Identities = 65/228 (28%), Positives = 113/228 (49%), Gaps = 3/228 (1%)
Query: 321 EGNLSPNYEDENEIWPVLGKIEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGK 380
+ P +EF +V Y ++ ++ T+ P E++ +VG +GAGK
Sbjct: 302 DAAPRPLAGKAPVTAAPAPSLEFSGVSVAYPGRRPALRPVSFTVPPGERVALVGPSGAGK 361
Query: 381 SSLIAAIFRLAEV-EGVIKIDDIDTEDVPLSKLRSNISIIPQDPVLFSGTLRKNLDPFEK 439
S+L+ + + EG I ++ + D R I+ +PQ P LF+GT+ +N+
Sbjct: 362 STLLNLLLGFVDPTEGSIAVNGVPLADADADSWRDQIAWVPQHPFLFAGTIAENIRLARP 421
Query: 440 Y-PDYVLWTALQEVELKDMIME-GAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILV 497
D + AL+ L + + GL+ + EGG S GQ Q + LARA +R+ +L+
Sbjct: 422 DASDAEIREALERAGLDEFVAALPQGLDTPIGEGGAGLSGGQAQRLALARAFLRDAPLLL 481
Query: 498 LDEATANVDPKTDLLIQRTIRKKFADCTVLTIAHRLHTIMDSDKVLVM 545
LDE TA++D +T+ + +R TVL + HRL +D+++V+
Sbjct: 482 LDEPTAHLDAETEAEVLEALRALAQGRTVLLVTHRLALAALADRIVVL 529
>gnl|CDD|131259 TIGR02204, MsbA_rel, ABC transporter, permease/ATP-binding protein.
This protein is related to a Proteobacterial ATP
transporter that exports lipid A and to eukaryotic
P-glycoproteins.
Length = 576
Score = 151 bits (384), Expect = 3e-39
Identities = 137/536 (25%), Positives = 240/536 (44%), Gaps = 95/536 (17%)
Query: 69 YFSLIVGLFVAGISRSTA--FYSACM---RCSKGIHKKMFEAVVYSPLAFFSTNPSGRIL 123
YF+ ++ + ++ TA FY R I + +F ++ +FF N SG ++
Sbjct: 60 YFAFLLVV-ALVLALGTAARFYLVTWLGERVVADIRRAVFAHLISLSPSFFDKNRSGEVV 118
Query: 124 NRFSKDMGAVDEVLPKAMLDAAQGVMQVSGALIVSLSVNP------LFSIPVLIL-LYLF 176
+R + D + V+ ++ A + + G LI+ +P L ++P+++L + LF
Sbjct: 119 SRLTTDTTLLQSVIGSSLSMALRNALMCIGGLIMMFITSPKLTSLVLLAVPLVLLPILLF 178
Query: 177 WRLSKAYLRTSKSLKYLEGVTRSPVFTHLNACLHGLPTIRAHGAAKILVEEFDYHQDLHS 236
R + R S+ + ++ L + T++A G H+D
Sbjct: 179 GRRVRKLSRESQD-------RIADAGSYAGETLGAIRTVQAFG-----------HEDAER 220
Query: 237 STWHLFVYTNMGFA--------YLIDFLCLLYLSTI--------------------LISF 268
S + V A L + +L I L F
Sbjct: 221 SRFGGAVEKAYEAARQRIRTRALLTAIVIVLVFGAIVGVLWVGAHDVIAGKMSAGTLGQF 280
Query: 269 FFFADIGGKVGLAVTQTMTLMGVVQWAMRQAAEVENHMISVKRLVEYTKLEPEGNLSPNY 328
F+A + V ++ + G +Q A AAE RL+E + EP+ +
Sbjct: 281 VFYAVM---VAGSIGTLSEVWGELQRAA-GAAE---------RLIELLQAEPDIKAPAHP 327
Query: 329 EDENEIWPVLGKIEFQNTNVRYLSGP--RVIKNLNITIHPKEKIGIVGRTGAGKSSLIAA 386
+ P+ G+IEF+ N Y + P + LN+T+ P E + +VG +GAGKS+L
Sbjct: 328 KTLPV--PLRGEIEFEQVNFAYPARPDQPALDGLNLTVRPGETVALVGPSGAGKSTLFQL 385
Query: 387 IFRLAE-VEGVIKIDDIDTEDVPLSKLRSNISIIPQDPVLFSGTLRKNLDPFEKY--PDY 443
+ R + G I +D +D + ++LR+ ++++PQDPVLF+ ++ +N+ +Y PD
Sbjct: 386 LLRFYDPQSGRILLDGVDLRQLDPAELRARMALVPQDPVLFAASVMENI----RYGRPD- 440
Query: 444 VLWTALQEVELKDMIMEGA--------GLNMTVYEGGTNFSVGQRQLICLARAIVRNNVI 495
+EVE G + + E G S GQRQ I +ARAI+++ I
Sbjct: 441 ---ATDEEVEAAARAAHAHEFISALPEGYDTYLGERGVTLSGGQRQRIAIARAILKDAPI 497
Query: 496 LVLDEATANVDPKTDLLIQRTIRKKFADCTVLTIAHRLHTIMDSDKVLVMDSGVAV 551
L+LDEAT+ +D +++ L+Q+ + T L IAHRL T++ +D+++VMD G V
Sbjct: 498 LLLDEATSALDAESEQLVQQALETLMKGRTTLIIAHRLATVLKADRIVVMDQGRIV 553
>gnl|CDD|227590 COG5265, ATM1, ABC-type transport system involved in Fe-S cluster
assembly, permease and ATPase components
[Posttranslational modification, protein turnover,
chaperones].
Length = 497
Score = 150 bits (380), Expect = 3e-39
Identities = 85/230 (36%), Positives = 127/230 (55%), Gaps = 12/230 (5%)
Query: 330 DENEIWPV-LGKIEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIF 388
D +WPV LG + F N + Y ++ ++ TI + + IVG +GAGKS+++ +F
Sbjct: 251 DAPPLWPVRLGAVAFINVSFAYDPRRPILNGISFTIPLGKTVAIVGESGAGKSTILRLLF 310
Query: 389 RLAEVE-GVIKIDDIDTEDVPLSKLRSNISIIPQDPVLFSGTLRKNLDPFEKYPDYVL-- 445
R +V G I ID D DV LR I I+PQD VLF+ T+ N+ KY
Sbjct: 311 RFYDVNSGSITIDGQDIRDVTQQSLRRAIGIVPQDTVLFNDTIAYNI----KYGRPDATA 366
Query: 446 ---WTALQEVELKDMIMEGA-GLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEA 501
A + ++ D I G + V E G S G++Q + +AR I++N IL+LDEA
Sbjct: 367 EEVGAAAEAAQIHDFIQSLPEGYDTGVGERGLKLSGGEKQRVAIARTILKNPPILILDEA 426
Query: 502 TANVDPKTDLLIQRTIRKKFADCTVLTIAHRLHTIMDSDKVLVMDSGVAV 551
T+ +D T+ IQ +R+ A T L IAHRL TI+D+D+++V+D+G V
Sbjct: 427 TSALDTHTEQAIQAALREVSAGRTTLVIAHRLSTIIDADEIIVLDNGRIV 476
>gnl|CDD|236865 PRK11160, PRK11160, cysteine/glutathione ABC transporter
membrane/ATP-binding component; Reviewed.
Length = 574
Score = 150 bits (382), Expect = 5e-39
Identities = 78/246 (31%), Positives = 129/246 (52%), Gaps = 11/246 (4%)
Query: 308 SVKRLVEYTKLEPEGNLSPNYEDENEIWPVLGKIEFQNTNVRYLSGPR-VIKNLNITIHP 366
S +R+ E T+ +PE + + + N + Y P+ V+K L++ I
Sbjct: 310 SARRINEITEQKPE----VTFPTTSTAAADQVSLTLNNVSFTYPDQPQPVLKGLSLQIKA 365
Query: 367 KEKIGIVGRTGAGKSSLIAAIFRLAEVE-GVIKIDDIDTEDVPLSKLRSNISIIPQDPVL 425
EK+ ++GRTG GKS+L+ + R + + G I ++ D + LR IS++ Q L
Sbjct: 366 GEKVALLGRTGCGKSTLLQLLTRAWDPQQGEILLNGQPIADYSEAALRQAISVVSQRVHL 425
Query: 426 FSGTLRKNL---DPFEKYPDYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQL 482
FS TLR NL P D L LQ+V L+ ++ + GLN + EGG S G+++
Sbjct: 426 FSATLRDNLLLAAP--NASDEALIEVLQQVGLEKLLEDDKGLNAWLGEGGRQLSGGEQRR 483
Query: 483 ICLARAIVRNNVILVLDEATANVDPKTDLLIQRTIRKKFADCTVLTIAHRLHTIMDSDKV 542
+ +ARA++ + +L+LDE T +D +T+ I + + + TVL I HRL + D++
Sbjct: 484 LGIARALLHDAPLLLLDEPTEGLDAETERQILELLAEHAQNKTVLMITHRLTGLEQFDRI 543
Query: 543 LVMDSG 548
VMD+G
Sbjct: 544 CVMDNG 549
>gnl|CDD|213219 cd03252, ABCC_Hemolysin, ATP-binding cassette domain of hemolysin
B, subfamily C. The ABC-transporter hemolysin B is a
central component of the secretion machinery that
translocates the toxin, hemolysin A, in a
Sec-independent fashion across both membranes of E.
coli. The hemolysin A (HlyA) transport machinery is
composed of the ATP-binding cassette (ABC) transporter
HlyB located in the inner membrane, hemolysin D (HlyD),
also anchored in the inner membrane, and TolC, which
resides in the outer membrane. HlyD apparently forms a
continuous channel that bridges the entire periplasm,
interacting with TolC and HlyB. This arrangement
prevents the appearance of periplasmic intermediates of
HlyA during substrate transport. Little is known about
the molecular details of HlyA transport, but it is
evident that ATP-hydrolysis by the ABC-transporter HlyB
is a necessary source of energy.
Length = 237
Score = 140 bits (354), Expect = 4e-38
Identities = 75/221 (33%), Positives = 119/221 (53%), Gaps = 16/221 (7%)
Query: 341 IEFQNTNVRYLS-GPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAEVE-GVIK 398
I F++ RY GP ++ N+++ I P E +GIVGR+G+GKS+L I R E G +
Sbjct: 1 ITFEHVRFRYKPDGPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVL 60
Query: 399 IDDIDTEDVPLSKLRSNISIIPQDPVLFSGTLRKNLDPFEKYPDYVLWTALQEVE----- 453
+D D + LR + ++ Q+ VLF+ ++R N+ + ++ V
Sbjct: 61 VDGHDLALADPAWLRRQVGVVLQENVLFNRSIRDNIALADPGMS------MERVIEAAKL 114
Query: 454 --LKDMIME-GAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATANVDPKTD 510
D I E G + V E G S GQRQ I +ARA++ N IL+ DEAT+ +D +++
Sbjct: 115 AGAHDFISELPEGYDTIVGEQGAGLSGGQRQRIAIARALIHNPRILIFDEATSALDYESE 174
Query: 511 LLIQRTIRKKFADCTVLTIAHRLHTIMDSDKVLVMDSGVAV 551
I R + A TV+ IAHRL T+ ++D+++VM+ G V
Sbjct: 175 HAIMRNMHDICAGRTVIIIAHRLSTVKNADRIIVMEKGRIV 215
>gnl|CDD|234041 TIGR02868, CydC, thiol reductant ABC exporter, CydC subunit. The
gene pair cydCD encodes an ABC-family transporter in
which each gene contains an N-terminal membrane-spanning
domain (pfam00664) and a C-terminal ATP-binding domain
(pfam00005). In E. coli these genes were discovered as
mutants which caused the terminal heme-copper oxidase
complex cytochrome bd to fail to assemble. Recent work
has shown that the transporter is involved in export of
redox-active thiol compounds such as cysteine and
glutathione. The linkage to assembly of the cytochrome
bd complex is further supported by the conserved operon
structure found outside the gammaproteobacteria
(cydABCD) containing both the transporter and oxidase
genes components. The genes used as the seed members for
this model are all either found in the
gammproteobacterial context or the CydABCD context. All
members of this family scoring above trusted at the time
of its creation were from genomes which encode a
cytochrome bd complex.
Length = 530
Score = 144 bits (366), Expect = 3e-37
Identities = 114/500 (22%), Positives = 202/500 (40%), Gaps = 64/500 (12%)
Query: 73 IVGLFVAGISRSTAFY-------SACMRCSKGIHKKMFEAVVYSPLAFFSTNPSGRILNR 125
V + GI R+ Y A +R + +++E + LA G +L R
Sbjct: 56 AVAVRAFGIGRAVFRYLERLVGHDAALRSLGALRVRVYERLARQALAGRRRLRRGDLLGR 115
Query: 126 FSKDMGAVDEVLPKAMLDAAQGVMQVSGALIVSLSVNPLFSIPVLILL------------ 173
D+ A+ ++ + ++ A GV V GA V+ + S+P ++L
Sbjct: 116 LGADVDALQDLYVRVIVPA--GVALVVGAAAVAAIA--VLSVPAALILAAGLLLAGFVAP 171
Query: 174 YLFWRLSKAYLRTSKSLKYLEGVTRSPVFTHLNACLHGLPTIRAHGA-----AKILVEEF 228
+ R ++A + L R + L L G + A GA A++ +
Sbjct: 172 LVSLRAARAAEQALARL-------RGELAAQLTDALDGAAELVASGALPAALAQVEEADR 224
Query: 229 DYHQDLHSSTWHLFVYTNMGFAYLIDFLCLLYLSTILISFFFFAD--IGGK-------VG 279
+ + + T +G A + L L + AD + +
Sbjct: 225 ELTRAERRAAA----ATALGAALTLLAAGLAVLGALWAGGPAVADGRLAPVTLAVLVLLP 280
Query: 280 LAVTQTMTLMG--VVQW-AMRQAAEVENHMISVKRLVEYTKLEPEGNLSPNYEDENEIWP 336
LA + + Q +R AAE R+VE
Sbjct: 281 LAAFEAFAALPAAAQQLTRVRAAAE---------RIVEVLDAAGPVAEGSAPAAGAVG-L 330
Query: 337 VLGKIEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFR-LAEVEG 395
+E ++ + Y P V+ +++ + P E++ I+G +G+GKS+L+A + L ++G
Sbjct: 331 GKPTLELRDLSAGYPGAPPVLDGVSLDLPPGERVAILGPSGSGKSTLLATLAGLLDPLQG 390
Query: 396 VIKIDDIDTEDVPLSKLRSNISIIPQDPVLFSGTLRKNLD-PFEKYPDYVLWTALQEVEL 454
+ +D + + ++R +S+ QD LF T+R+NL D LW AL+ V L
Sbjct: 391 EVTLDGVPVSSLDQDEVRRRVSVCAQDAHLFDTTVRENLRLARPDATDEELWAALERVGL 450
Query: 455 KDMIME-GAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATANVDPKTDLLI 513
D + GL+ + EGG S G+RQ + LARA++ + IL+LDE T ++D +T +
Sbjct: 451 ADWLRALPDGLDTVLGEGGARLSGGERQRLALARALLADAPILLLDEPTEHLDAETADEL 510
Query: 514 QRTIRKKFADCTVLTIAHRL 533
+ + TV+ I H L
Sbjct: 511 LEDLLAALSGRTVVLITHHL 530
>gnl|CDD|182733 PRK10790, PRK10790, putative multidrug transporter
membrane\ATP-binding components; Provisional.
Length = 592
Score = 145 bits (367), Expect = 4e-37
Identities = 75/215 (34%), Positives = 125/215 (58%), Gaps = 2/215 (0%)
Query: 339 GKIEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAEV-EGVI 397
G+I+ N + Y V++N+N+++ + + +VG TG+GKS+L + + + EG I
Sbjct: 339 GRIDIDNVSFAYRDDNLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPLTEGEI 398
Query: 398 KIDDIDTEDVPLSKLRSNISIIPQDPVLFSGTLRKNLDPFEKYPDYVLWTALQEVELKDM 457
++D + S LR ++++ QDPV+ + T N+ + +W AL+ V+L ++
Sbjct: 399 RLDGRPLSSLSHSVLRQGVAMVQQDPVVLADTFLANVTLGRDISEEQVWQALETVQLAEL 458
Query: 458 IME-GAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATANVDPKTDLLIQRT 516
GL + E G N SVGQ+QL+ LAR +V+ IL+LDEATAN+D T+ IQ+
Sbjct: 459 ARSLPDGLYTPLGEQGNNLSVGQKQLLALARVLVQTPQILILDEATANIDSGTEQAIQQA 518
Query: 517 IRKKFADCTVLTIAHRLHTIMDSDKVLVMDSGVAV 551
+ T++ IAHRL TI+++D +LV+ G AV
Sbjct: 519 LAAVREHTTLVVIAHRLSTIVEADTILVLHRGQAV 553
>gnl|CDD|233596 TIGR01846, type_I_sec_HlyB, type I secretion system ABC
transporter, HlyB family. Type I protein secretion is a
system in some Gram-negative bacteria to export proteins
(often proteases) across both inner and outer membranes
to the extracellular medium. This is one of three
proteins of the type I secretion apparatus. Targeted
proteins are not cleaved at the N-terminus, but rather
carry signals located toward the extreme C-terminus to
direct type I secretion [Protein fate, Protein and
peptide secretion and trafficking].
Length = 694
Score = 146 bits (369), Expect = 5e-37
Identities = 144/525 (27%), Positives = 232/525 (44%), Gaps = 62/525 (11%)
Query: 60 LSTESYIGIYFSLIVGLFVAGIS--RSTAFYSACMRCSKGIHKKMFEAVVYSPLAFFSTN 117
LST S + + L V +F + R+ F R + +++ ++ PL +F +
Sbjct: 175 LSTLSVLALAM-LAVAIFEPALGGLRTYLFAHLTSRIDVELGARLYRHLLGLPLGYFESR 233
Query: 118 PSGRILNRFSKDMGAVDEVLPKAMLDAAQGVMQVSGALIVSLSVNP------LFSIPVLI 171
G + R +++ + L + L ++ V L V +P + S+
Sbjct: 234 RVGDTVARV-RELEQIRNFLTGSALTVVLDLLFVVVFLAVMFFYSPTLTGVVIGSLVCYA 292
Query: 172 LLYLFW------RLSKAYLRTSKSLKYL-EGVTRSPVFTHLNACLHGLPTIRAHGAAKIL 224
LL +F R+ + R++ + +L E VT G+ TI+A
Sbjct: 293 LLSVFVGPILRKRVEDKFERSAAATSFLVESVT-------------GIETIKATATEPQF 339
Query: 225 VEEFDYHQDLHSSTWHLFVYTNMGF-----AYLIDFLCLLYLSTILISFF-FFADIGGK- 277
+D + L + F TN+G LI L+ ++ +F IGG
Sbjct: 340 QNRWD--RQLAAYVAASFRVTNLGNIAGQAIELIQ-----KLTFAILLWFGAHLVIGGAL 392
Query: 278 -VGLAVTQTMTLMGVVQWAMRQAA---EVENHMISVKRLVEYTKLEPEGNLSPNYEDENE 333
G V M V Q +R A + + I+++RL + P +
Sbjct: 393 SPGQLVAFNMLAGRVTQPVLRLAQLWQDFQQTGIALERLGDILN-SP----TEPRSAGLA 447
Query: 334 IWPVL-GKIEFQNTNVRYL-SGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA 391
P L G I F+N RY P V+ NLN+ I P E IGIVG +G+GKS+L + RL
Sbjct: 448 ALPELRGAITFENIRFRYAPDSPEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLY 507
Query: 392 EVE-GVIKIDDIDTEDVPLSKLRSNISIIPQDPVLFSGTLRKNL---DPFEKYPDYVLWT 447
+ G + +D +D + LR + ++ Q+ VLFS ++R N+ +P P +
Sbjct: 508 TPQHGQVLVDGVDLAIADPAWLRRQMGVVLQENVLFSRSIRDNIALCNP--GAPFEHVIH 565
Query: 448 ALQEVELKDMIME-GAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATANVD 506
A + D I E G N V E G N S GQRQ I +ARA+V N IL+ DEAT+ +D
Sbjct: 566 AAKLAGAHDFISELPQGYNTEVGEKGANLSGGQRQRIAIARALVGNPRILIFDEATSALD 625
Query: 507 PKTDLLIQRTIRKKFADCTVLTIAHRLHTIMDSDKVLVMDSGVAV 551
+++ LI R +R+ TV+ IAHRL T+ D+++V++ G
Sbjct: 626 YESEALIMRNMREICRGRTVIIIAHRLSTVRACDRIIVLEKGQIA 670
>gnl|CDD|184214 PRK13657, PRK13657, cyclic beta-1,2-glucan ABC transporter;
Provisional.
Length = 588
Score = 138 bits (349), Expect = 1e-34
Identities = 73/224 (32%), Positives = 123/224 (54%), Gaps = 4/224 (1%)
Query: 337 VLGKIEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAE-VEG 395
V G +EF + + Y + + +++++ P + + IVG TGAGKS+LI + R+ + G
Sbjct: 331 VKGAVEFDDVSFSYDNSRQGVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFDPQSG 390
Query: 396 VIKIDDIDTEDVPLSKLRSNISIIPQDPVLFSGTLRKNLD-PFEKYPDYVLWTALQEVEL 454
I ID D V + LR NI+++ QD LF+ ++ N+ D + A + +
Sbjct: 391 RILIDGTDIRTVTRASLRRNIAVVFQDAGLFNRSIEDNIRVGRPDATDEEMRAAAERAQA 450
Query: 455 KDMIMEGA-GLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATANVDPKTDLLI 513
D I G + V E G S G+RQ + +ARA++++ IL+LDEAT+ +D +T+ +
Sbjct: 451 HDFIERKPDGYDTVVGERGRQLSGGERQRLAIARALLKDPPILILDEATSALDVETEAKV 510
Query: 514 QRTIRKKFADCTVLTIAHRLHTIMDSDKVLVMDSGVAVVSSFGF 557
+ + + T IAHRL T+ ++D++LV D+G VV S F
Sbjct: 511 KAALDELMKGRTTFIIAHRLSTVRNADRILVFDNG-RVVESGSF 553
>gnl|CDD|213215 cd03248, ABCC_TAP, ATP-binding cassette domain of the Transporter
Associated with Antigen Processing, subfamily C. TAP
(Transporter Associated with Antigen Processing) is
essential for peptide delivery from the cytosol into the
lumen of the endoplasmic reticulum (ER), where these
peptides are loaded on major histocompatibility complex
(MHC) I molecules. Loaded MHC I leave the ER and display
their antigenic cargo on the cell surface to cytotoxic T
cells. Subsequently, virus-infected or malignantly
transformed cells can be eliminated. TAP belongs to the
large family of ATP-binding cassette (ABC) transporters,
which translocate a vast variety of solutes across
membranes.
Length = 226
Score = 130 bits (328), Expect = 1e-34
Identities = 75/237 (31%), Positives = 131/237 (55%), Gaps = 23/237 (9%)
Query: 322 GNLSPNYEDENEIWPVLGKIEFQNTNVRYLSGP--RVIKNLNITIHPKEKIGIVGRTGAG 379
G+L+P++ G ++FQN Y + P V+++++ T+HP E +VG +G+G
Sbjct: 1 GSLAPDHLK--------GIVKFQNVTFAYPTRPDTLVLQDVSFTLHPGEVTALVGPSGSG 52
Query: 380 KSSLIAAIFRLAEVE-GVIKIDDIDTEDVPLSKLRSNISIIPQDPVLFSGTLRKNLD--- 435
KS+++A + + + G + +D L S +S++ Q+PVLF+ +L+ N+
Sbjct: 53 KSTVVALLENFYQPQGGQVLLDGKPISQYEHKYLHSKVSLVGQEPVLFARSLQDNIAYGL 112
Query: 436 ---PFEKYPDYVLWTALQEVELKDMIMEGA-GLNMTVYEGGTNFSVGQRQLICLARAIVR 491
FE + A Q+ I E A G + V E G+ S GQ+Q + +ARA++R
Sbjct: 113 QSCSFECVKE-----AAQKAHAHSFISELASGYDTEVGEKGSQLSGGQKQRVAIARALIR 167
Query: 492 NNVILVLDEATANVDPKTDLLIQRTIRKKFADCTVLTIAHRLHTIMDSDKVLVMDSG 548
N +L+LDEAT+ +D +++ +Q+ + TVL IAHRL T+ +D++LV+D G
Sbjct: 168 NPQVLILDEATSALDAESEQQVQQALYDWPERRTVLVIAHRLSTVERADQILVLDGG 224
>gnl|CDD|130261 TIGR01193, bacteriocin_ABC, ABC-type bacteriocin transporter. This
model describes ABC-type bacteriocin transporter. The
amino terminal domain (pfam03412) processes the
N-terminal leader peptide from the bacteriocin while
C-terminal domains resemble ABC transporter membrane
protein and ATP-binding cassette domain. In general,
bacteriocins are agents which are responsible for
killing or inhibiting the closely related species or
even different strains of the same species. Bacteriocins
are usually encoded by bacterial plasmids. Bacteriocins
are named after the species and hence in literature one
encounters various names e.g., leucocin from Leuconostic
geldium; pedicocin from Pedicoccus acidilactici; sakacin
from Lactobacillus sake etc [Protein fate, Protein and
peptide secretion and trafficking, Protein fate, Protein
modification and repair, Transport and binding proteins,
Other].
Length = 708
Score = 139 bits (351), Expect = 1e-34
Identities = 123/487 (25%), Positives = 213/487 (43%), Gaps = 93/487 (19%)
Query: 110 PLAFFSTNPSGRILNRF---SKDMGAVDEVLPKAMLDAAQGVM-------QVSGALIVSL 159
P++FFST +G I++RF S + A+ + LD V+ Q ++SL
Sbjct: 243 PMSFFSTRRTGEIVSRFTDASSIIDALASTILSLFLDMWILVIVGLFLVRQNMLLFLLSL 302
Query: 160 SVNPLFSIPVLILLYLFWRLSKAYLRTSKSLKYLEGVTRSPVFTHLNACLHGLPTIRAHG 219
P++++ +++ F +L+ ++ + L S + LN G+ TI++
Sbjct: 303 LSIPVYAVIIILFKRTFNKLNHDAMQANAVLN-------SSIIEDLN----GIETIKSLT 351
Query: 220 AAKILVEEFDYHQDLHSSTWHLFV-YTNMGFAYLIDFLCLLYLSTILISFFFFADIGGKV 278
E Y + F Y N F Y AD G +
Sbjct: 352 -----SEAERYSK-----IDSEFGDYLNKSFKYQK------------------ADQGQQA 383
Query: 279 GLAVTQTMTLMGVVQWAMRQAAEVENHMISVKRLVEY--------TKLEPEGNLSPN--- 327
AVT+ + L V+ W A V +++ +L+ + T LE NL P
Sbjct: 384 IKAVTK-LILNVVILWT--GAYLVMRGKLTLGQLITFNALLSYFLTPLENIINLQPKLQA 440
Query: 328 ----YEDENEIWPV----------------LGKIEFQNTNVRYLSGPRVIKNLNITIHPK 367
NE++ V G I + + Y G ++ ++++TI
Sbjct: 441 ARVANNRLNEVYLVDSEFINKKKRTELNNLNGDIVINDVSYSYGYGSNILSDISLTIKMN 500
Query: 368 EKIGIVGRTGAGKSSLIAAIFRLAEVE-GVIKIDDIDTEDVPLSKLRSNISIIPQDPVLF 426
K IVG +G+GKS+L + + G I ++ +D+ LR I+ +PQ+P +F
Sbjct: 501 SKTTIVGMSGSGKSTLAKLLVGFFQARSGEILLNGFSLKDIDRHTLRQFINYLPQEPYIF 560
Query: 427 SGTLRKNL--DPFEKYPDYVLWTALQEVELKDMIME-GAGLNMTVYEGGTNFSVGQRQLI 483
SG++ +NL E +W A + E+KD I G + E G++ S GQ+Q I
Sbjct: 561 SGSILENLLLGAKENVSQDEIWAACEIAEIKDDIENMPLGYQTELSEEGSSISGGQKQRI 620
Query: 484 CLARAIVRNNVILVLDEATANVDPKTDLLIQRTIRK--KFADCTVLTIAHRLHTIMDSDK 541
LARA++ ++ +L+LDE+T+N+D T+ ++ + D T++ +AHRL SDK
Sbjct: 621 ALARALLTDSKVLILDESTSNLDTITE---KKIVNNLLNLQDKTIIFVAHRLSVAKQSDK 677
Query: 542 VLVMDSG 548
++V+D G
Sbjct: 678 IIVLDHG 684
>gnl|CDD|236870 PRK11174, PRK11174, cysteine/glutathione ABC transporter
membrane/ATP-binding component; Reviewed.
Length = 588
Score = 137 bits (347), Expect = 3e-34
Identities = 62/212 (29%), Positives = 112/212 (52%), Gaps = 6/212 (2%)
Query: 341 IEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAEVEGVIKID 400
IE ++ + G + LN T+ ++I +VG +GAGK+SL+ A+ +G +KI+
Sbjct: 350 IEAEDLEILSPDGKTLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFLPYQGSLKIN 409
Query: 401 DIDTEDVPLSKLRSNISIIPQDPVLFSGTLRKNL---DPFEKYPDYVLWTALQEVELKDM 457
I+ ++ R ++S + Q+P L GTLR N+ +P D L AL+ + +
Sbjct: 410 GIELRELDPESWRKHLSWVGQNPQLPHGTLRDNVLLGNP--DASDEQLQQALENAWVSEF 467
Query: 458 I-MEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATANVDPKTDLLIQRT 516
+ + GL+ + + SVGQ Q + LARA+++ +L+LDE TA++D ++ L+ +
Sbjct: 468 LPLLPQGLDTPIGDQAAGLSVGQAQRLALARALLQPCQLLLLDEPTASLDAHSEQLVMQA 527
Query: 517 IRKKFADCTVLTIAHRLHTIMDSDKVLVMDSG 548
+ T L + H+L + D++ VM G
Sbjct: 528 LNAASRRQTTLMVTHQLEDLAQWDQIWVMQDG 559
>gnl|CDD|234357 TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin system ABC
transporter, ATP-binding protein. Members of this
protein family are ABC transporter ATP-binding subunits,
part of a three-gene putative bacteriocin transport
operon. The other subunits include another ATP-binding
subunit (TIGR03796), which has an N-terminal leader
sequence cleavage domain, and an HlyD homolog
(TIGR03794). In a number of genomes, members of protein
families related to nitrile hydratase alpha subunit or
to nif11 have undergone paralogous family expansions,
with members possessing a putative bacteriocin cleavage
region ending with a classic Gly-Gly motif. Those sets
of putative bacteriocins, members of this protein family
and its partners TIGR03794 and TIGR03796, and
cyclodehydratase/docking scaffold fusion proteins of
thiazole/oxazole biosynthesis frequently show correlated
species distribution and co-clustering within many of
those genomes [Transport and binding proteins, Amino
acids, peptides and amines, Cellular processes,
Biosynthesis of natural products].
Length = 686
Score = 134 bits (339), Expect = 4e-33
Identities = 69/223 (30%), Positives = 115/223 (51%), Gaps = 19/223 (8%)
Query: 339 GKIEFQNTNVRYL-SGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRL-----AE 392
G IE RY GP ++ ++++ I P E + IVG +G+GKS+L RL
Sbjct: 450 GAIEVDRVTFRYRPDGPLILDDVSLQIEPGEFVAIVGPSGSGKSTL----LRLLLGFETP 505
Query: 393 VEGVIKIDDIDTEDVPLSKLRSNISIIPQDPVLFSGTLRKNLDPFEKYPDYVLWTALQEV 452
G + D D + + +R + ++ Q+ L SG++ +N+ W A +
Sbjct: 506 ESGSVFYDGQDLAGLDVQAVRRQLGVVLQNGRLMSGSIFENIAGGAPLTLDEAWEAARMA 565
Query: 453 EL----KDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATANVDPK 508
L + M M G++ + EGG S GQRQ + +ARA+VR IL+ DEAT+ +D +
Sbjct: 566 GLAEDIRAMPM---GMHTVISEGGGTLSGGQRQRLLIARALVRKPRILLFDEATSALDNR 622
Query: 509 TDLLIQRTIRKKFADCTVLTIAHRLHTIMDSDKVLVMDSGVAV 551
T ++ ++ + T + IAHRL TI ++D++ V+D+G V
Sbjct: 623 TQAIVSESLERLKV--TRIVIAHRLSTIRNADRIYVLDAGRVV 663
>gnl|CDD|213213 cd03246, ABCC_Protease_Secretion, ATP-binding cassette domain of
PrtD, subfamily C. This family represents the ABC
component of the protease secretion system PrtD, a
60-kDa integral membrane protein sharing 37% identity
with HlyB, the ABC component of the alpha-hemolysin
secretion pathway, in the C-terminal domain. They export
degradative enzymes by using a type I protein secretion
system and lack an N-terminal signal peptide, but
contain a C-terminal secretion signal. The Type I
secretion apparatus is made up of three components, an
ABC transporter, a membrane fusion protein (MFP), and an
outer membrane protein (OMP). For the HlyA transporter
complex, HlyB (ABC transporter) and HlyD (MFP) reside in
the inner membrane of E. coli. The OMP component is
TolC, which is thought to interact with the MFP to form
a continuous channel across the periplasm from the
cytoplasm to the exterior. HlyB belongs to the family of
ABC transporters, which are ubiquitous, ATP-dependent
transmembrane pumps or channels. The spectrum of
transport substrates ranges from inorganic ions,
nutrients such as amino acids, sugars, or peptides,
hydrophobic drugs, to large polypeptides, such as HlyA.
Length = 173
Score = 123 bits (310), Expect = 1e-32
Identities = 61/213 (28%), Positives = 102/213 (47%), Gaps = 43/213 (20%)
Query: 341 IEFQNTNVRYLSG-PRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAE-VEGVIK 398
+E +N + RY P V++N++ +I P E + I+G +G+GKS+L I L G ++
Sbjct: 1 LEVENVSFRYPGAEPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVR 60
Query: 399 IDDIDTEDVPLSKLRSNISIIPQDPVLFSGTLRKNLDPFEKYPDYVLWTALQEVELKDMI 458
+D D ++L ++ +PQD LFSG++ +N+
Sbjct: 61 LDGADISQWDPNELGDHVGYLPQDDELFSGSIAENI------------------------ 96
Query: 459 MEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATANVDPKTDLLIQRTIR 518
S GQRQ + LARA+ N ILVLDE +++D + + + + I
Sbjct: 97 ----------------LSGGQRQRLGLARALYGNPRILVLDEPNSHLDVEGERALNQAIA 140
Query: 519 K-KFADCTVLTIAHRLHTIMDSDKVLVMDSGVA 550
K A T + IAHR T+ +D++LV++ G
Sbjct: 141 ALKAAGATRIVIAHRPETLASADRILVLEDGRV 173
>gnl|CDD|183016 PRK11176, PRK11176, lipid transporter ATP-binding/permease protein;
Provisional.
Length = 582
Score = 127 bits (321), Expect = 5e-31
Identities = 81/249 (32%), Positives = 135/249 (54%), Gaps = 12/249 (4%)
Query: 306 MISVKRLVEYTKLEPEGNLSPNYEDENEIWPVLGKIEFQNTNVRYLSGPR-VIKNLNITI 364
M + + L LE E + E + I G IEF+N Y ++N+N I
Sbjct: 312 MAACQTLFAILDLEQEKD-----EGKRVIERAKGDIEFRNVTFTYPGKEVPALRNINFKI 366
Query: 365 HPKEKIGIVGRTGAGKSSLIAAIFRLAEV-EGVIKIDDIDTEDVPLSKLRSNISIIPQDP 423
+ + +VGR+G+GKS++ + R ++ EG I +D D D L+ LR+ ++++ Q+
Sbjct: 367 PAGKTVALVGRSGSGKSTIANLLTRFYDIDEGEILLDGHDLRDYTLASLRNQVALVSQNV 426
Query: 424 VLFSGTLRKNL--DPFEKYPDYVLWTALQEVELKDMI--MEGAGLNMTVYEGGTNFSVGQ 479
LF+ T+ N+ E+Y + A + D I M+ GL+ + E G S GQ
Sbjct: 427 HLFNDTIANNIAYARTEQYSREQIEEAARMAYAMDFINKMDN-GLDTVIGENGVLLSGGQ 485
Query: 480 RQLICLARAIVRNNVILVLDEATANVDPKTDLLIQRTIRKKFADCTVLTIAHRLHTIMDS 539
RQ I +ARA++R++ IL+LDEAT+ +D +++ IQ + + + T L IAHRL TI +
Sbjct: 486 RQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIEKA 545
Query: 540 DKVLVMDSG 548
D++LV++ G
Sbjct: 546 DEILVVEDG 554
Score = 30.0 bits (68), Expect = 4.1
Identities = 25/115 (21%), Positives = 52/115 (45%), Gaps = 22/115 (19%)
Query: 72 LIVGL-FVAGISRSTAFYSACMRCSKG-----IHKKMFEAVVYSPLAFFSTNPSGRILNR 125
+++GL + GI+ + Y C+ G + +++F ++ P++FF +G +L+R
Sbjct: 70 VVIGLMILRGITSFISSY--CISWVSGKVVMTMRRRLFGHMMGMPVSFFDKQSTGTLLSR 127
Query: 126 FSKDMGAVDEVLPKAMLDAAQGVMQVSGALIVSLSVNPLFSIPVLILLYLFWRLS 180
+ D V A++ + GA I+ L + ++ Y W+LS
Sbjct: 128 ITYDSEQVASSSSGALITVVR-----EGASIIGLFI---------MMFYYSWQLS 168
>gnl|CDD|213214 cd03247, ABCC_cytochrome_bd, ATP-binding cassette domain of CydCD,
subfamily C. The CYD subfamily implicated in cytochrome
bd biogenesis. The CydC and CydD proteins are important
for the formation of cytochrome bd terminal oxidase of
E. coli and it has been proposed that they were
necessary for biosynthesis of the cytochrome bd quinol
oxidase and for periplasmic c-type cytochromes. CydCD
were proposed to determine a heterooligomeric complex
important for heme export into the periplasm or to be
involved in the maintenance of the proper redox state of
the periplasmic space. In Bacillus subtilis, the absence
of CydCD does not affect the presence of halo-cytochrome
c in the membrane and this observation suggests that
CydCD proteins are not involved in the export of heme in
this organism.
Length = 178
Score = 117 bits (294), Expect = 2e-30
Identities = 62/210 (29%), Positives = 101/210 (48%), Gaps = 40/210 (19%)
Query: 341 IEFQNTNVRYL-SGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFR-LAEVEGVIK 398
+ N + Y +V+KNL++ + EKI ++GR+G+GKS+L+ + L +G I
Sbjct: 1 LSINNVSFSYPEQEQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEIT 60
Query: 399 IDDIDTEDVPLSKLRSNISIIPQDPVLFSGTLRKNLDPFEKYPDYVLWTALQEVELKDMI 458
+D + D+ + L S IS++ Q P LF TLR NL
Sbjct: 61 LDGVPVSDLEKA-LSSLISVLNQRPYLFDTTLRNNL------------------------ 95
Query: 459 MEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATANVDPKTDLLIQRTIR 518
G FS G+RQ + LAR ++++ I++LDE T +DP T+ + I
Sbjct: 96 -------------GRRFSGGERQRLALARILLQDAPIVLLDEPTVGLDPITERQLLSLIF 142
Query: 519 KKFADCTVLTIAHRLHTIMDSDKVLVMDSG 548
+ D T++ I H L I DK+L +++G
Sbjct: 143 EVLKDKTLIWITHHLTGIEHMDKILFLENG 172
>gnl|CDD|213179 cd00267, ABC_ATPase, ATP-binding cassette transporter
nucleotide-binding domain. ABC transporters are a large
family of proteins involved in the transport of a wide
variety of different compounds, like sugars, ions,
peptides, and more complex organic molecules. The
nucleotide-binding domain shows the highest similarity
between all members of the family. ABC transporters are
a subset of nucleotide hydrolases that contain a
signature motif, Q-loop, and H-loop/switch region, in
addition to, the Walker A motif/P-loop and Walker B
motif commonly found in a number of ATP- and GTP-binding
and hydrolyzing proteins.
Length = 157
Score = 113 bits (286), Expect = 1e-29
Identities = 54/210 (25%), Positives = 88/210 (41%), Gaps = 57/210 (27%)
Query: 342 EFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAEV-EGVIKID 400
E +N + RY + N+++T+ E + +VG G+GKS+L+ AI L + G I ID
Sbjct: 1 EIENLSFRYGGRT-ALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEILID 59
Query: 401 DIDTEDVPLSKLRSNISIIPQDPVLFSGTLRKNLDPFEKYPDYVLWTALQEVELKDMIME 460
D +PL +LR I +PQ
Sbjct: 60 GKDIAKLPLEELRRRIGYVPQ--------------------------------------- 80
Query: 461 GAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATANVDPKTDLLIQRTIRKK 520
S GQRQ + LARA++ N +L+LDE T+ +DP + + +R+
Sbjct: 81 --------------LSGGQRQRVALARALLLNPDLLLLDEPTSGLDPASRERLLELLREL 126
Query: 521 FAD-CTVLTIAHRLHTIMD-SDKVLVMDSG 548
+ TV+ + H +D+V+V+ G
Sbjct: 127 AEEGRTVIIVTHDPELAELAADRVIVLKDG 156
>gnl|CDD|130260 TIGR01192, chvA, glucan exporter ATP-binding protein. This model
describes glucan exporter ATP binding protein in
bacteria. It belongs to the larger ABC transporter
superfamily with the characteristic ATP binding motif.
The In general, this protein is in some ways implicated
in osmoregulation and suggested to participate in the
export of glucan from the cytoplasm to periplasm. The
cyclic beta-1,2-glucan in the bactrerial periplasmic
space is suggested to confer the property of high
osmolority. It has also been demonstrated that mutants
in this loci have lost functions of virulence and
motility. It is unclear as to how virulence and
osmoadaptaion are related [Transport and binding
proteins, Carbohydrates, organic alcohols, and acids].
Length = 585
Score = 123 bits (309), Expect = 2e-29
Identities = 103/406 (25%), Positives = 192/406 (47%), Gaps = 24/406 (5%)
Query: 157 VSLSVNPLFSIPVLILLYLFWRLSKAYL-RTSKSLKYLEGVTRSPVFTHLNACLHGLPTI 215
+ +++ SI +++L L+ ++K + RT +E + VF H++ + + +
Sbjct: 150 TAFAMDWRLSIVLMVLGILYILIAKLVMQRTKNGQAAVEHHYHN-VFKHVSDSISNVSVV 208
Query: 216 RAHGAAKILVEEFDYH-QDLHSS-----TWHLFVYTNMGFAYLIDFLCLLYLSTILISFF 269
++ + +L S+ W A I +C+L + T+L+
Sbjct: 209 HSYNRIEAETSALKQFTNNLLSAQYPVLDWWALASGLNRMASTISMMCILVIGTVLV--- 265
Query: 270 FFADIGGKVGLAVTQTMTLMGVVQWA---MRQAAEVENHMISVK-RLVEYTKLEPEGNLS 325
I G+ L+V + + +G + Q + + + +L ++ LE
Sbjct: 266 ----IKGE--LSVGEVIAFIGFANLLIGRLDQMSGFITQIFEARAKLEDFFDLEDSVFQR 319
Query: 326 PNYEDENEIWPVLGKIEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIA 385
D E+ V G +EF++ + + + + +++ + + IVG TGAGK++LI
Sbjct: 320 EEPADAPELPNVKGAVEFRHITFEFANSSQGVFDVSFEAKAGQTVAIVGPTGAGKTTLIN 379
Query: 386 AIFRLAEVE-GVIKIDDIDTEDVPLSKLRSNISIIPQDPVLFSGTLRKNLD-PFEKYPDY 443
+ R+ + G I ID ID V LR +I+ + QD LF+ ++R+N+ E D
Sbjct: 380 LLQRVYDPTVGQILIDGIDINTVTRESLRKSIATVFQDAGLFNRSIRENIRLGREGATDE 439
Query: 444 VLWTALQEVELKDMIMEGA-GLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEAT 502
++ A + D I++ + G + V E G S G+RQ + +ARAI++N ILVLDEAT
Sbjct: 440 EVYEAAKAAAAHDFILKRSNGYDTLVGERGNRLSGGERQRLAIARAILKNAPILVLDEAT 499
Query: 503 ANVDPKTDLLIQRTIRKKFADCTVLTIAHRLHTIMDSDKVLVMDSG 548
+ +D +T+ ++ I + T IAHRL T+ ++D VL +D G
Sbjct: 500 SALDVETEARVKNAIDALRKNRTTFIIAHRLSTVRNADLVLFLDQG 545
>gnl|CDD|213217 cd03250, ABCC_MRP_domain1, ATP-binding cassette domain 1 of
multidrug resistance-associated protein, subfamily C.
This subfamily is also known as MRP (multidrug
resistance-associated protein). Some of the MRP members
have five additional transmembrane segments in their
N-terminus, but the function of these additional
membrane-spanning domains is not clear. The MRP was
found in the multidrug-resisting lung cancer cell in
which p-glycoprotein was not overexpressed. MRP exports
glutathione by drug stimulation, as well as, certain
substrates in conjugated forms with anions, such as
glutathione, glucuronate, and sulfate.
Length = 204
Score = 110 bits (278), Expect = 7e-28
Identities = 60/223 (26%), Positives = 111/223 (49%), Gaps = 35/223 (15%)
Query: 341 IEFQNTNVRYLSG----PRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAE---V 393
I ++ + + SG +K++N+ + E + IVG G+GKSSL++A+ L E +
Sbjct: 1 ISVEDASFTWDSGEQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSAL--LGELEKL 58
Query: 394 EGVIKIDDIDTEDVPLSKLRSNISIIPQDPVLFSGTLRKNL---DPF--EKYPDYVLWTA 448
G + + +I+ + Q+P + +GT+R+N+ PF E+Y + A
Sbjct: 59 SGSVSV-------------PGSIAYVSQEPWIQNGTIRENILFGKPFDEERYEKVIKACA 105
Query: 449 LQEVELKDM-IMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATANVDP 507
L+ D+ I+ G + E G N S GQ+Q I LARA+ + I +LD+ + VD
Sbjct: 106 LE----PDLEILPD-GDLTEIGEKGINLSGGQKQRISLARAVYSDADIYLLDDPLSAVDA 160
Query: 508 KT-DLLIQRTIRKKFADC-TVLTIAHRLHTIMDSDKVLVMDSG 548
+ + I + T + + H+L + +D+++V+D+G
Sbjct: 161 HVGRHIFENCILGLLLNNKTRILVTHQLQLLPHADQIVVLDNG 203
>gnl|CDD|213224 cd03257, ABC_NikE_OppD_transporters, ATP-binding cassette domain of
nickel/oligopeptides specific transporters. The ABC
transporter subfamily specific for the transport of
dipeptides, oligopeptides (OppD), and nickel (NikDE).
The NikABCDE system of E. coli belongs to this family
and is composed of the periplasmic binding protein NikA,
two integral membrane components (NikB and NikC), and
two ATPase (NikD and NikE). The NikABCDE transporter is
synthesized under anaerobic conditions to meet the
increased demand for nickel resulting from hydrogenase
synthesis. The molecular mechanism of nickel uptake in
many bacteria and most archaea is not known. Many other
members of this ABC family are also involved in the
uptake of dipeptides and oligopeptides. The oligopeptide
transport system (Opp) is a five-component ABC transport
composed of a membrane-anchored substrate binding
proteins (SRP), OppA, two transmembrane proteins, OppB
and OppC, and two ATP-binding domains, OppD and OppF.
Length = 228
Score = 108 bits (272), Expect = 8e-27
Identities = 62/233 (26%), Positives = 108/233 (46%), Gaps = 37/233 (15%)
Query: 341 IEFQNTNVRYLSG---PRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRL-AEVEGV 396
+E +N +V + +G + + +++ +I E +G+VG +G+GKS+L AI L G
Sbjct: 2 LEVKNLSVSFPTGGGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGS 61
Query: 397 IKIDDIDTEDVP---LSKLRSNISIIPQD------PVLFSGTLRKNL-DPFEKYPDYVLW 446
I D D + R I ++ QD P + T+ + + +P + L
Sbjct: 62 IIFDGKDLLKLSRRLRKIRRKEIQMVFQDPMSSLNPRM---TIGEQIAEPLRIH--GKLS 116
Query: 447 TALQEVELKDMIMEGAGLNMTV-----YEGGTNFSVGQRQLICLARAIVRNNVILVLDEA 501
E +++ G GL V +E S GQRQ + +ARA+ N +L+ DE
Sbjct: 117 KKEARKEAVLLLLVGVGLPEEVLNRYPHE----LSGGQRQRVAIARALALNPKLLIADEP 172
Query: 502 TANVDPKT-----DLLIQRTIRKKFADCTVLTIAHRLHTI-MDSDKVLVMDSG 548
T+ +D DLL + ++++ T+L I H L + +D+V VM +G
Sbjct: 173 TSALDVSVQAQILDLL--KKLQEEL-GLTLLFITHDLGVVAKIADRVAVMYAG 222
>gnl|CDD|213192 cd03225, ABC_cobalt_CbiO_domain1, First domain of the ATP-binding
cassette component of cobalt transport system. Domain I
of the ABC component of a cobalt transport family found
in bacteria, archaea, and eukaryota. The transition
metal cobalt is an essential component of many enzymes
and must be transported into cells in appropriate
amounts when needed. This ABC transport system of the
CbiMNQO family is involved in cobalt transport in
association with the cobalamin (vitamin B12)
biosynthetic pathways. Most of cobalt (Cbi) transport
systems possess a separate CbiN component, the
cobalt-binding periplasmic protein, and they are encoded
by the conserved gene cluster cbiMNQO. Both the CbiM and
CbiQ proteins are integral cytoplasmic membrane
proteins, and the CbiO protein has the linker peptide
and the Walker A and B motifs commonly found in the
ATPase components of the ABC-type transport systems.
Length = 211
Score = 107 bits (271), Expect = 9e-27
Identities = 58/223 (26%), Positives = 107/223 (47%), Gaps = 29/223 (13%)
Query: 342 EFQNTNVRYLSGPR-VIKNLNITIHPKEKIGIVGRTGAGKSSLIAAI-FRLAEVEGVIKI 399
E +N + Y G R + ++++TI E + IVG G+GKS+L+ + L G + +
Sbjct: 1 ELKNLSFSYPDGARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLV 60
Query: 400 DDIDTEDVPLSKLRSNISIIPQDP------------VLFSGTLRKNLDPFEKYPDYVLWT 447
D D + L +LR + ++ Q+P V F L P E+ + V
Sbjct: 61 DGKDLTKLSLKELRRKVGLVFQNPDDQFFGPTVEEEVAFG--LENLGLPEEEIEERVEE- 117
Query: 448 ALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATANVDP 507
AL+ V L+ + + + + S GQ+Q + +A + + IL+LDE TA +DP
Sbjct: 118 ALELVGLEGL------RDRSPFT----LSGGQKQRVAIAGVLAMDPDILLLDEPTAGLDP 167
Query: 508 KTDLLIQRTIRK-KFADCTVLTIAHRLHTIMD-SDKVLVMDSG 548
+ ++K K T++ + H L +++ +D+V+V++ G
Sbjct: 168 AGRRELLELLKKLKAEGKTIIIVTHDLDLLLELADRVIVLEDG 210
>gnl|CDD|224054 COG1131, CcmA, ABC-type multidrug transport system, ATPase
component [Defense mechanisms].
Length = 293
Score = 107 bits (270), Expect = 5e-26
Identities = 62/253 (24%), Positives = 118/253 (46%), Gaps = 13/253 (5%)
Query: 341 IEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIF-RLAEVEGVIKI 399
IE +N +Y + ++ + P E G++G GAGK++L+ + L G I +
Sbjct: 5 IEVRNLTKKYGGDKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEILV 64
Query: 400 DDIDTEDVPLSKLRSNISIIPQDPVLFSG-TLRKNLDPFEKYPDYVLWTALQEVELKDMI 458
D P +K+R I +PQ+P L+ T+R+NL+ F + Y L E +++ +
Sbjct: 65 LGYDVVKEP-AKVRRRIGYVPQEPSLYPELTVRENLEFFARL--YGLSKEEAEERIEE-L 120
Query: 459 MEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATANVDPKTDLLIQRTIR 518
+E GL + S G +Q + +A A++ + +L+LDE T+ +DP++ I +R
Sbjct: 121 LELFGLEDKANKKVRTLSGGMKQRLSIALALLHDPELLILDEPTSGLDPESRREIWELLR 180
Query: 519 KKFAD--CTVLTIAHRLHTIMD-SDKVLVMDSGVAVVSSFGFFFSKDLIEGTVSAKVLSS 575
+ + T+L H L + D+V++++ G + ++L E V+
Sbjct: 181 ELAKEGGVTILLSTHILEEAEELCDRVIILNDGKIIA----EGTPEELKEKFGGKGVIEL 236
Query: 576 RKRREKEDRIGES 588
R + + E
Sbjct: 237 EPERLELAELLEG 249
>gnl|CDD|224045 COG1120, FepC, ABC-type cobalamin/Fe3+-siderophores transport
systems, ATPase components [Inorganic ion transport and
metabolism / Coenzyme metabolism].
Length = 258
Score = 106 bits (266), Expect = 1e-25
Identities = 51/215 (23%), Positives = 100/215 (46%), Gaps = 9/215 (4%)
Query: 341 IEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAEV-EGVIKI 399
+E +N + Y G ++ +L+ +I E GI+G G+GKS+L+ + L + G + +
Sbjct: 3 LEVENLSFGY-GGKPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLL 61
Query: 400 DDIDTEDVPLSKLRSNISIIPQDPVLFSGTLRKNLDPFEKYPDYVLWTALQEVELKDMIM 459
D D + +L ++ +PQ P G L +YP ++ E ++++
Sbjct: 62 DGKDIASLSPKELAKKLAYVPQSPSAPFGLTVYELVLLGRYP-HLGLFGRPSKEDEEIVE 120
Query: 460 EGAGLNMTVYEGGTNF---SVGQRQLICLARAIVRNNVILVLDEATANVDPKTDLLIQRT 516
E L + S G+RQ + +ARA+ + IL+LDE T+++D + +
Sbjct: 121 EALELLGLEHLADRPVDELSGGERQRVLIARALAQETPILLLDEPTSHLDIAHQIEVLEL 180
Query: 517 IRK--KFADCTVLTIAHRL-HTIMDSDKVLVMDSG 548
+R + TV+ + H L +D ++++ G
Sbjct: 181 LRDLNREKGLTVVMVLHDLNLAARYADHLILLKDG 215
>gnl|CDD|224047 COG1122, CbiO, ABC-type cobalt transport system, ATPase component
[Inorganic ion transport and metabolism].
Length = 235
Score = 103 bits (260), Expect = 3e-25
Identities = 58/225 (25%), Positives = 113/225 (50%), Gaps = 24/225 (10%)
Query: 341 IEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAEVE-GVIKI 399
IE +N + RY +K++++ I E++ ++G G+GKS+L+ + L + G + +
Sbjct: 4 IEAENLSFRYPGRKAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEVLV 63
Query: 400 DDIDTEDV-PLSKLRSNISIIPQDPV--LFSGTLRKNLD---PFEKYP----DYVLWTAL 449
D +DT L +LR + ++ Q+P LF T+ + P + + AL
Sbjct: 64 DGLDTSSEKSLLELRQKVGLVFQNPDDQLFGPTVEDEVAFGLENLGLPREEIEERVAEAL 123
Query: 450 QEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATANVDPKT 509
+ V L+++ L+ + N S GQ+Q + +A + IL+LDE TA +DPK
Sbjct: 124 ELVGLEEL------LDRPPF----NLSGGQKQRVAIAGVLAMGPEILLLDEPTAGLDPKG 173
Query: 510 DLLIQRTIRK--KFADCTVLTIAHRLHTIMD-SDKVLVMDSGVAV 551
+ ++K + T++ + H L +++ +D+V+V+D G +
Sbjct: 174 RRELLELLKKLKEEGGKTIIIVTHDLELVLEYADRVVVLDDGKIL 218
>gnl|CDD|226969 COG4618, ArpD, ABC-type protease/lipase transport system, ATPase
and permease components [General function prediction
only].
Length = 580
Score = 109 bits (274), Expect = 4e-25
Identities = 70/236 (29%), Positives = 120/236 (50%), Gaps = 17/236 (7%)
Query: 356 VIKNLNITIHPKEKIGIVGRTGAGKSSL---IAAIFRLAEVEGVIKIDDIDTEDVPLSKL 412
++K ++ + E +GI+G +G+GKS+L + I+ G +++D D +L
Sbjct: 351 ILKGISFALQAGEALGIIGPSGSGKSTLARLLVGIWP--PTSGSVRLDGADLRQWDREQL 408
Query: 413 RSNISIIPQDPVLFSGTLRKNLDPFEKYPD-YVLWTALQEVELKDMIME-GAGLNMTVYE 470
+I +PQD LF GT+ +N+ F + D + A + + ++I+ G + + E
Sbjct: 409 GRHIGYLPQDVELFDGTIAENIARFGEEADPEKVIEAARLAGVHELILRLPQGYDTRIGE 468
Query: 471 GGTNFSVGQRQLICLARAIVRNNVILVLDEATANVDPKTDL-LIQRTIRKKFADCTVLTI 529
GG S GQRQ I LARA+ + ++VLDE +N+D + + L + K TV+ I
Sbjct: 469 GGATLSGGQRQRIALARALYGDPFLVVLDEPNSNLDSEGEAALAAAILAAKARGGTVVVI 528
Query: 530 AHRLHTIMDSDKVLVMDSGVAVVSSFGFFFSKDLIEGTVSAKVLSSRKRREKEDRI 585
AHR + DK+LV+ G +++FG ++ V AKVL R+ K +
Sbjct: 529 AHRPSALASVDKILVLQDG--RIAAFG---PRE----EVLAKVLRPPPRQAKPGTV 575
>gnl|CDD|224058 COG1135, AbcC, ABC-type metal ion transport system, ATPase
component [Inorganic ion transport and metabolism].
Length = 339
Score = 102 bits (257), Expect = 7e-24
Identities = 65/234 (27%), Positives = 105/234 (44%), Gaps = 37/234 (15%)
Query: 341 IEFQNTNVRYLSG----PRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAE-VEG 395
IE +N + + + ++++ I E GI+G +GAGKS+L+ I L G
Sbjct: 2 IELENVSKTFGQTGTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSG 61
Query: 396 VIKIDDIDTEDV---PLSKLRSNISIIPQDPVLFSG-TLRKNL--------DPFEKYPDY 443
+ +D D + L +LR I +I Q L S T+ +N+ P +
Sbjct: 62 SVFVDGQDLTALSEAELRQLRQKIGMIFQHFNLLSSRTVFENVAFPLELAGVPKAEIKQR 121
Query: 444 VLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATA 503
V L+ V L D Y S GQ+Q + +ARA+ N IL+ DEAT+
Sbjct: 122 VA-ELLELVGLSD--KADR------YPA--QLSGGQKQRVAIARALANNPKILLCDEATS 170
Query: 504 NVDPKT-----DLLIQRTIRKKFADCTVLTIAHRLHTIMD-SDKVLVMDSGVAV 551
+DP+T +LL + I ++ T++ I H + + D+V V+D G V
Sbjct: 171 ALDPETTQSILELL--KDINREL-GLTIVLITHEMEVVKRICDRVAVLDQGRLV 221
>gnl|CDD|182732 PRK10789, PRK10789, putative multidrug transporter
membrane\ATP-binding components; Provisional.
Length = 569
Score = 104 bits (260), Expect = 2e-23
Identities = 70/209 (33%), Positives = 110/209 (52%), Gaps = 29/209 (13%)
Query: 356 VIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAEV-EGVIKIDDIDTEDVPLSKLRS 414
++N+N T+ P + +GI G TG+GKS+L++ I R +V EG I+ DI + L RS
Sbjct: 330 ALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFDVSEGDIRFHDIPLTKLQLDSWRS 389
Query: 415 NISIIPQDPVLFSGTLRKNLDPFEKYPDYVLWTAL-------QEVEL--------KDMIM 459
++++ Q P LFS T+ N+ AL QE+E D++
Sbjct: 390 RLAVVSQTPFLFSDTVANNI-------------ALGRPDATQQEIEHVARLASVHDDILR 436
Query: 460 EGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATANVDPKTDLLIQRTIRK 519
G + V E G S GQ+Q I +ARA++ N IL+LD+A + VD +T+ I +R+
Sbjct: 437 LPQGYDTEVGERGVMLSGGQKQRISIARALLLNAEILILDDALSAVDGRTEHQILHNLRQ 496
Query: 520 KFADCTVLTIAHRLHTIMDSDKVLVMDSG 548
TV+ AHRL + ++ ++LVM G
Sbjct: 497 WGEGRTVIISAHRLSALTEASEILVMQHG 525
>gnl|CDD|213227 cd03260, ABC_PstB_phosphate_transporter, ATP-binding cassette
domain of the phosphate transport system. Phosphate
uptake is of fundamental importance in the cell
physiology of bacteria because phosphate is required as
a nutrient. The Pst system of E. coli comprises four
distinct subunits encoded by the pstS, pstA, pstB, and
pstC genes. The PstS protein is a phosphate-binding
protein located in the periplasmic space. PstA and PstC
are hydrophobic and they form the transmembrane portion
of the Pst system. PstB is the catalytic subunit, which
couples the energy of ATP hydrolysis to the import of
phosphate across cellular membranes through the Pst
system, often referred as ABC-protein. PstB belongs to
one of the largest superfamilies of proteins
characterized by a highly conserved adenosine
triphosphate (ATP) binding cassette (ABC), which is also
a nucleotide binding domain (NBD).
Length = 227
Score = 98.4 bits (246), Expect = 2e-23
Identities = 64/230 (27%), Positives = 112/230 (48%), Gaps = 30/230 (13%)
Query: 341 IEFQNTNVRYLSGPR-VIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRL------AEV 393
IE ++ NV Y G + +K++++ I E ++G +G GKS+L+ + RL A
Sbjct: 1 IELRDLNVYY--GDKHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPD 58
Query: 394 EGVIKID--DIDTEDVPLSKLRSNISIIPQDPVLFSGTLRKNLDPFEKYPDYVLWTALQE 451
EG + +D DI DV + +LR + ++ Q P F G++ N+ Y L L
Sbjct: 59 EGEVLLDGKDIYDLDVDVLELRRRVGMVFQKPNPFPGSIYDNVA-------YGLR--LHG 109
Query: 452 VELKDMIME-------GAGLNMTVYE--GGTNFSVGQRQLICLARAIVRNNVILVLDEAT 502
++LK+ + E A L V + S GQ+Q +CLARA+ +L+LDE T
Sbjct: 110 IKLKEELDERVEEALRKAALWDEVKDRLHALGLSGGQQQRLCLARALANEPEVLLLDEPT 169
Query: 503 ANVDPKTDLLIQRTIRKKFADCTVLTIAHRLHTIMD-SDKVLVMDSGVAV 551
+ +DP + I+ I + + T++ + H + +D+ + +G V
Sbjct: 170 SALDPISTAKIEELIAELKKEYTIVIVTHNMQQAARVADRTAFLLNGRLV 219
>gnl|CDD|224046 COG1121, ZnuC, ABC-type Mn/Zn transport systems, ATPase component
[Inorganic ion transport and metabolism].
Length = 254
Score = 98.8 bits (247), Expect = 3e-23
Identities = 61/220 (27%), Positives = 99/220 (45%), Gaps = 31/220 (14%)
Query: 341 IEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIF-RLAEVEGVIKI 399
IE +N V Y + P V++++++++ E ++G GAGKS+L+ AI L G IKI
Sbjct: 5 IEVENLTVSYGNRP-VLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGEIKI 63
Query: 400 DDIDTEDVPLSKLRSNISIIPQ-------------DPVLFSGTLRKNLDPFEKYPDY-VL 445
+LR I +PQ D VL +K D +
Sbjct: 64 FGKPVRKR-RKRLR--IGYVPQKSSVDRSFPITVKDVVLLGRYGKKGWFRRLNKKDKEKV 120
Query: 446 WTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATANV 505
AL+ V ++D+ + + E S GQ+Q + LARA+ +N +L+LDE V
Sbjct: 121 DEALERVGMEDLR------DRQIGE----LSGGQKQRVLLARALAQNPDLLLLDEPFTGV 170
Query: 506 DPKTDLLIQRTIRK-KFADCTVLTIAHRLHTIMD-SDKVL 543
D I +++ + TVL + H L +M D+V+
Sbjct: 171 DVAGQKEIYDLLKELRQEGKTVLMVTHDLGLVMAYFDRVI 210
>gnl|CDD|200134 TIGR01842, type_I_sec_PrtD, type I secretion system ABC
transporter, PrtD family. Type I protein secretion is a
system in some Gram-negative bacteria to export proteins
(often proteases) across both inner and outer membranes
to the extracellular medium. This is one of three
proteins of the type I secretion apparatus. Targeted
proteins are not cleaved at the N-terminus, but rather
carry signals located toward the extreme C-terminus to
direct type I secretion [Protein fate, Protein and
peptide secretion and trafficking].
Length = 544
Score = 102 bits (256), Expect = 6e-23
Identities = 58/211 (27%), Positives = 102/211 (48%), Gaps = 16/211 (7%)
Query: 355 RVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRL-AEVEGVIKIDDIDTEDVPLSKLR 413
++ ++ ++ E + I+G +G+GKS+L I + G +++D D +
Sbjct: 332 PTLRGISFSLQAGEALAIIGPSGSGKSTLARLIVGIWPPTSGSVRLDGADLKQWDRETFG 391
Query: 414 SNISIIPQDPVLFSGTLRKNLDPFEKYPDYVLWTALQEVE------LKDMIME-GAGLNM 466
+I +PQD LF GT+ +N+ F + D + +E + ++I+ G +
Sbjct: 392 KHIGYLPQDVELFPGTVAENIARFGENAD-----PEKIIEAAKLAGVHELILRLPDGYDT 446
Query: 467 TVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATANVDPKTDL-LIQRTIRKKFADCT 525
+ GG S GQRQ I LARA+ + ++VLDE +N+D + + L K T
Sbjct: 447 VIGPGGATLSGGQRQRIALARALYGDPKLVVLDEPNSNLDEEGEQALANAIKALKARGIT 506
Query: 526 VLTIAHRLHTIMDSDKVLVMDSGVAVVSSFG 556
V+ I HR + DK+LV+ G ++ FG
Sbjct: 507 VVVITHRPSLLGCVDKILVLQDG--RIARFG 535
>gnl|CDD|213181 cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-binding component of
iron-siderophores, vitamin B12 and hemin transporters
and related proteins. ABC transporters, involved in the
uptake of siderophores, heme, and vitamin B12, are
widely conserved in bacteria and archaea. Only very few
species lack representatives of the siderophore family
transporters. The E. coli BtuCD protein is an ABC
transporter mediating vitamin B12 uptake. The two
ATP-binding cassettes (BtuD) are in close contact with
each other, as are the two membrane-spanning subunits
(BtuC); this arrangement is distinct from that observed
for the E. coli lipid flippase MsbA. The BtuC subunits
provide 20 transmembrane helices grouped around a
translocation pathway that is closed to the cytoplasm by
a gate region, whereas the dimer arrangement of the BtuD
subunits resembles the ATP-bound form of the Rad50 DNA
repair enzyme. A prominent cytoplasmic loop of BtuC
forms the contact region with the ATP-binding cassette
and represent a conserved motif among the ABC
transporters.
Length = 180
Score = 95.6 bits (239), Expect = 9e-23
Identities = 53/211 (25%), Positives = 93/211 (44%), Gaps = 41/211 (19%)
Query: 342 EFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRL-AEVEGVIKID 400
E +N +V Y G V+ +L+++I E +GI+G GAGKS+L+ + L G I +D
Sbjct: 1 EVENLSVGY-GGRTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLD 59
Query: 401 DIDTEDVPLSKLRSNISIIPQDPVLFSGTLRKNLDPFEKYPDYVLWTALQEVELKDMIME 460
D + +L I+ +PQ AL+ + L +
Sbjct: 60 GKDLASLSPKELARKIAYVPQ--------------------------ALELLGLAHLADR 93
Query: 461 GAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATANVDPKTDLLIQRTIRK- 519
S G+RQ + LARA+ + IL+LDE T+++D + + +R+
Sbjct: 94 PF----------NELSGGERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRL 143
Query: 520 -KFADCTVLTIAHRL-HTIMDSDKVLVMDSG 548
+ TV+ + H L +D+V+++ G
Sbjct: 144 ARERGKTVVMVLHDLNLAARYADRVILLKDG 174
>gnl|CDD|213196 cd03229, ABC_Class3, ATP-binding cassette domain of the binding
protein-dependent transport systems. This class is
comprised of all BPD (Binding Protein Dependent) systems
that are largely represented in archaea and eubacteria
and are primarily involved in scavenging solutes from
the environment. ABC transporters are a large family of
proteins involved in the transport of a wide variety of
different compounds, like sugars, ions, peptides, and
more complex organic molecules. The nucleotide binding
domain shows the highest similarity between all members
of the family. ABC transporters are a subset of
nucleotide hydrolases that contain a signature motif,
Q-loop, and H-loop/switch region, in addition to, the
Walker A motif/P-loop and Walker B motif commonly found
in a number of ATP- and GTP-binding and hydrolyzing
proteins.
Length = 178
Score = 94.6 bits (236), Expect = 2e-22
Identities = 58/218 (26%), Positives = 97/218 (44%), Gaps = 51/218 (23%)
Query: 341 IEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAE-VEGVIKI 399
+E +N + RY V+ ++++ I E + ++G +G+GKS+L+ I L E G I I
Sbjct: 1 LELKNVSKRY-GQKTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSILI 59
Query: 400 D--DIDTEDVPLSKLRSNISIIPQDPVLFSGTLRKNLDPFEKYPDYVLWTALQEVELKDM 457
D D+ + L LR I ++ QD LF
Sbjct: 60 DGEDLTDLEDELPPLRRRIGMVFQDFALFP------------------------------ 89
Query: 458 IMEGAGLNMTVYEGGTN----FSVGQRQLICLARAIVRNNVILVLDEATANVDPKTDLLI 513
++TV E N S GQ+Q + LARA+ + +L+LDE T+ +DP T +
Sbjct: 90 -------HLTVLE---NIALGLSGGQQQRVALARALAMDPDVLLLDEPTSALDPITRREV 139
Query: 514 QRTIRKKFAD--CTVLTIAHRLHTIMD-SDKVLVMDSG 548
+ ++ A TV+ + H L +D+V+V+ G
Sbjct: 140 RALLKSLQAQLGITVVLVTHDLDEAARLADRVVVLRDG 177
>gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport
systems, contain duplicated ATPase [General function
prediction only].
Length = 539
Score = 99.6 bits (249), Expect = 5e-22
Identities = 54/210 (25%), Positives = 94/210 (44%), Gaps = 22/210 (10%)
Query: 354 PRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAEVE-GVIKIDDIDT--EDVPLS 410
+ + +++ + E +G+VG +G+GKS+L + L G I D D L
Sbjct: 304 VKAVDDVSFDLREGETLGLVGESGSGKSTLARILAGLLPPSSGSIIFDGQDLDLTGGELR 363
Query: 411 KLRSNISIIPQDPVLF---SGTLRKNL-DPFEKYPDYVLWTALQEV-ELKDMI-MEGAGL 464
+LR I ++ QDP T+ L +P + V EL +++ + L
Sbjct: 364 RLRRRIQMVFQDPYSSLNPRMTVGDILAEPLRIHGGGSGAERRARVAELLELVGLPPEFL 423
Query: 465 NMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATANVDPKT-----DLLIQRTIRK 519
+ +E S GQRQ + +ARA+ +L+LDE + +D +LL +++
Sbjct: 424 DRYPHE----LSGGQRQRVAIARALALEPKLLILDEPVSALDVSVQAQVLNLLKD--LQE 477
Query: 520 KFADCTVLTIAHRLHTIMD-SDKVLVMDSG 548
+ T L I+H L + +D+V VM G
Sbjct: 478 EL-GLTYLFISHDLAVVRYIADRVAVMYDG 506
Score = 80.7 bits (200), Expect = 6e-16
Identities = 63/243 (25%), Positives = 106/243 (43%), Gaps = 46/243 (18%)
Query: 341 IEFQNTNVRYLSG---PRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRL-----AE 392
+E +N V + + +++++ + P E +GIVG +G+GKS+L A+ L
Sbjct: 6 LEVENLTVEFATDGGRVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRI 65
Query: 393 VEGVIKIDDID----TEDVPLSKLR-SNISIIPQD------PVLFSG-------TLRKNL 434
G + +D D +E + KLR I++I QD PV+ G L
Sbjct: 66 TSGEVILDGRDLLGLSER-EMRKLRGKRIAMIFQDPMTSLNPVMTIGDQIREALRLHGKG 124
Query: 435 DPFEKYPDYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNV 494
E V L++V L D + ++ S G RQ + +A A+
Sbjct: 125 SRAEARKRAV--ELLEQVGLPDPERR----DRYPHQ----LSGGMRQRVMIAMALALKPK 174
Query: 495 ILVLDEATANVDPKT-----DLLIQRTIRKKFADCTVLTIAHRLHTIMD-SDKVLVMDSG 548
+L+ DE T +D T DLL + ++++ VL I H L + + +D+V+VM G
Sbjct: 175 LLIADEPTTALDVTTQAQILDLL--KDLQREL-GMAVLFITHDLGVVAELADRVVVMYKG 231
Query: 549 VAV 551
V
Sbjct: 232 EIV 234
>gnl|CDD|213202 cd03235, ABC_Metallic_Cations, ATP-binding cassette domain of the
metal-type transporters. This family includes
transporters involved in the uptake of various metallic
cations such as iron, manganese, and zinc. The ATPases
of this group of transporters are very similar to
members of iron-siderophore uptake family suggesting
that they share a common ancestor. The best
characterized metal-type ABC transporters are the
YfeABCD system of Y. pestis, the SitABCD system of
Salmonella enterica serovar Typhimurium, and the SitABCD
transporter of Shigella flexneri. Moreover other
uncharacterized homologs of these metal-type
transporters are mainly found in pathogens like
Haemophilus or enteroinvasive E. coli isolates.
Length = 213
Score = 92.6 bits (231), Expect = 2e-21
Identities = 68/226 (30%), Positives = 107/226 (47%), Gaps = 35/226 (15%)
Query: 342 EFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAE-VEGVIKID 400
E ++ V Y G V+++++ + P E + IVG GAGKS+L+ AI L + G I++
Sbjct: 1 EVEDLTVSY-GGHPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVF 59
Query: 401 DIDTEDVPLSKLRSNISIIPQ-------------DPVLFSGTLRKNLDPFEKYPDY--VL 445
PL K R I +PQ D VL K L D V
Sbjct: 60 G-----KPLEKERKRIGYVPQRRSIDRDFPISVRDVVLMGLYGHKGLFRRLSKADKAKVD 114
Query: 446 WTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATANV 505
AL+ V L ++ + + S GQ+Q + LARA+V++ +L+LDE A V
Sbjct: 115 -EALERVGLSELA------DRQI----GELSGGQQQRVLLARALVQDPDLLLLDEPFAGV 163
Query: 506 DPKTDLLIQRTIRK-KFADCTVLTIAHRLHTIMDS-DKVLVMDSGV 549
DPKT I +R+ + T+L + H L +++ D+VL+++ V
Sbjct: 164 DPKTQEDIYELLRELRREGMTILVVTHDLGLVLEYFDRVLLLNRTV 209
>gnl|CDD|213197 cd03230, ABC_DR_subfamily_A, ATP-binding cassette domain of the
drug resistance transporter and related proteins,
subfamily A. This family of ATP-binding proteins
belongs to a multi-subunit transporter involved in drug
resistance (BcrA and DrrA), nodulation, lipid transport,
and lantibiotic immunity. In bacteria and archaea, these
transporters usually include an ATP-binding protein and
one or two integral membrane proteins. Eukaryotic
systems of the ABCA subfamily display ABC domains that
are quite similar to this family. The ATP-binding domain
shows the highest similarity between all members of the
ABC transporter family. ABC transporters are a subset of
nucleotide hydrolases that contain a signature motif,
Q-loop, and H-loop/switch region, in addition to, the
Walker A motif/P-loop and Walker B motif commonly found
in a number of ATP- and GTP-binding and hydrolyzing
proteins.
Length = 173
Score = 90.9 bits (227), Expect = 2e-21
Identities = 53/213 (24%), Positives = 97/213 (45%), Gaps = 47/213 (22%)
Query: 341 IEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAEV-EGVIKI 399
IE +N + RY + ++++T+ E G++G GAGK++LI I L + G IK+
Sbjct: 1 IEVRNLSKRY-GKKTALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEIKV 59
Query: 400 DDIDTEDVPLSKLRSNISIIPQDPVLFSGTLRKNLDPFEKYPDYVLWTALQEVELKDMIM 459
D + P +++ I +P++P L+
Sbjct: 60 LGKDIKKEPE-EVKRRIGYLPEEPSLYE-------------------------------- 86
Query: 460 EGAGLNMTVYEGGTN--FSVGQRQLICLARAIVRNNVILVLDEATANVDPKTDLLIQRTI 517
N+TV E N S G +Q + LA+A++ + +L+LDE T+ +DP++ +
Sbjct: 87 -----NLTVRE---NLKLSGGMKQRLALAQALLHDPELLILDEPTSGLDPESRREFWELL 138
Query: 518 RK-KFADCTVLTIAHRLHTIMD-SDKVLVMDSG 548
R+ K T+L +H L D+V ++++G
Sbjct: 139 RELKKEGKTILLSSHILEEAERLCDRVAILNNG 171
>gnl|CDD|226359 COG3839, MalK, ABC-type sugar transport systems, ATPase components
[Carbohydrate transport and metabolism].
Length = 338
Score = 93.9 bits (234), Expect = 6e-21
Identities = 62/219 (28%), Positives = 109/219 (49%), Gaps = 17/219 (7%)
Query: 341 IEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAEV-EGVIKI 399
+E +N + S V+K++N+ I E + ++G +G GKS+L+ I L E G I I
Sbjct: 4 LELKNVRKSFGSFE-VLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEILI 62
Query: 400 DDIDTEDVPLSKLRSNISIIPQDPVLF-SGTLRKNLDPFEKYPDYVLWTALQEVELKDMI 458
D D D+P K R I+++ Q+ L+ T+ +N+ + + E++ + +
Sbjct: 63 DGRDVTDLPPEK-R-GIAMVFQNYALYPHMTVYENIA----FGLKLRGVPKAEIDKR--V 114
Query: 459 MEGAG-LNMTVYEG--GTNFSVGQRQLICLARAIVRNNVILVLDEATANVDPKTDLLIQR 515
E A L + S GQRQ + LARA+VR + +LDE +N+D K +L++
Sbjct: 115 KEVAKLLGLEHLLNRKPLQLSGGQRQRVALARALVRKPKVFLLDEPLSNLDAKLRVLMRS 174
Query: 516 TIRK--KFADCTVLTIAHRLHTIMD-SDKVLVMDSGVAV 551
I+K + T + + H M +D+++VM+ G
Sbjct: 175 EIKKLHERLGTTTIYVTHDQVEAMTLADRIVVMNDGRIQ 213
>gnl|CDD|213226 cd03259, ABC_Carb_Solutes_like, ATP-binding cassette domain of the
carbohydrate and solute transporters-like. This family
is comprised of proteins involved in the transport of
apparently unrelated solutes and proteins specific for
di- and oligosaccharides and polyols. ABC transporters
are a large family of proteins involved in the transport
of a wide variety of different compounds, like sugars,
ions, peptides and more complex organic molecules. The
nucleotide-binding domain shows the highest similarity
between all members of the family. ABC transporters are
a subset of nucleotide hydrolases that contain a
signature motif, Q-loop, and H-loop/switch region, in
addition to, the Walker A motif/P-loop and Walker B
motif commonly found in a number of ATP- and GTP-binding
and hydrolyzing proteins.
Length = 213
Score = 90.7 bits (226), Expect = 9e-21
Identities = 58/221 (26%), Positives = 105/221 (47%), Gaps = 21/221 (9%)
Query: 341 IEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAEV-EGVIKI 399
+E + + Y R + +L++T+ P E + ++G +G GK++L+ I L G I I
Sbjct: 1 LELKGLSKTY-GSVRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILI 59
Query: 400 DDIDTEDVPLSKLRSNISIIPQDPVLFSG-TLRKNLDPFEKYPDYVLWTALQEVELK-DM 457
D D VP R NI ++ QD LF T+ +N+ + + E+ +
Sbjct: 60 DGRDVTGVPPE--RRNIGMVFQDYALFPHLTVAENIA----FGLKLRGVPKAEIRARVRE 113
Query: 458 IMEGAGL----NMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATANVDPKTDLLI 513
++E GL N +E S GQ+Q + LARA+ R +L+LDE + +D K +
Sbjct: 114 LLELVGLEGLLNRYPHE----LSGGQQQRVALARALAREPSLLLLDEPLSALDAKLREEL 169
Query: 514 QRTIRK--KFADCTVLTIAHRLHTIMD-SDKVLVMDSGVAV 551
+ +++ + T + + H + +D++ VM+ G V
Sbjct: 170 REELKELQRELGITTIYVTHDQEEALALADRIAVMNEGRIV 210
>gnl|CDD|213225 cd03258, ABC_MetN_methionine_transporter, ATP-binding cassette
domain of methionine transporter. MetN (also known as
YusC) is an ABC-type transporter encoded by metN of the
metNPQ operon in Bacillus subtilis that is involved in
methionine transport. Other members of this system
include the MetP permease and the MetQ substrate binding
protein. ABC transporters are a subset of nucleotide
hydrolases that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing proteins.
Length = 233
Score = 90.3 bits (225), Expect = 2e-20
Identities = 66/226 (29%), Positives = 108/226 (47%), Gaps = 22/226 (9%)
Query: 341 IEFQNTNVRYLSGPR---VIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRL-AEVEGV 396
IE +N + + +K++++++ E GI+GR+GAGKS+LI I L G
Sbjct: 2 IELKNVSKVFGDTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGS 61
Query: 397 IKIDDIDTEDVP---LSKLRSNISIIPQDPVLFSG-TLRKNLDPFEKYPDYVLWTALQEV 452
+ +D D + L K R I +I Q L S T+ +N+ P + E+
Sbjct: 62 VLVDGTDLTLLSGKELRKARRRIGMIFQHFNLLSSRTVFENV----ALPLEIAGVPKAEI 117
Query: 453 ELK-DMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATANVDPKT-- 509
E + ++E GL S GQ+Q + +ARA+ N +L+ DEAT+ +DP+T
Sbjct: 118 EERVLELLELVGLEDKADAYPAQLSGGQKQRVGIARALANNPKVLLCDEATSALDPETTQ 177
Query: 510 ---DLLIQRTIRKKFADCTVLTIAHRLHTIMD-SDKVLVMDSGVAV 551
LL R I ++ T++ I H + + D+V VM+ G V
Sbjct: 178 SILALL--RDINREL-GLTIVLITHEMEVVKRICDRVAVMEKGEVV 220
>gnl|CDD|213223 cd03256, ABC_PhnC_transporter, ATP-binding cassette domain of the
binding protein-dependent phosphonate transport system.
Phosphonates are a class of organophosphorus compounds
characterized by a chemically stable
carbon-to-phosphorus (C-P) bond. Phosphonates are
widespread among naturally occurring compounds in all
kingdoms of wildlife, but only prokaryotic
microorganisms are able to cleave this bond. Certain
bacteria such as E. coli can use alkylphosphonates as a
phosphorus source. ABC transporters are a subset of
nucleotide hydrolases that contain a signature motif,
Q-loop, and H-loop/switch region, in addition to, the
Walker A motif/P-loop and Walker B motif commonly found
in a number of ATP- and GTP-binding and hydrolyzing
proteins.
Length = 241
Score = 87.6 bits (218), Expect = 2e-19
Identities = 51/199 (25%), Positives = 90/199 (45%), Gaps = 30/199 (15%)
Query: 341 IEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAE-VEGVIKI 399
IE +N + Y +G + +K+++++I+P E + ++G +GAGKS+L+ + L E G + I
Sbjct: 1 IEVENLSKTYPNGKKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLI 60
Query: 400 DDIDTEDVPLSKL---RSNISIIPQDP-----------VLFS-----GTLRKNLDPFEKY 440
D D + L R I +I Q VL T R F K
Sbjct: 61 DGTDINKLKGKALRQLRRQIGMIFQQFNLIERLSVLENVLSGRLGRRSTWRSLFGLFPKE 120
Query: 441 PDYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDE 500
AL+ V L D + A S GQ+Q + +ARA+++ +++ DE
Sbjct: 121 EKQRALAALERVGLLDKAYQRAD----------QLSGGQQQRVAIARALMQQPKLILADE 170
Query: 501 ATANVDPKTDLLIQRTIRK 519
A++DP + + +++
Sbjct: 171 PVASLDPASSRQVMDLLKR 189
>gnl|CDD|131368 TIGR02315, ABC_phnC, phosphonate ABC transporter, ATP-binding
protein. Phosphonates are a class of
phosphorus-containing organic compound with a stable
direct C-P bond rather than a C-O-P linkage. A number of
bacterial species have operons, typically about 14 genes
in size, with genes for ATP-dependent transport of
phosphonates, degradation, and regulation of the
expression of the system. Members of this protein family
are the ATP-binding cassette component of tripartite ABC
transporters of phosphonates [Transport and binding
proteins, Anions].
Length = 243
Score = 87.0 bits (216), Expect = 3e-19
Identities = 65/234 (27%), Positives = 111/234 (47%), Gaps = 39/234 (16%)
Query: 341 IEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAE-VEGVIKI 399
+E +N + Y +G + +KN+N+ I+P E + I+G +GAGKS+L+ I RL E G I +
Sbjct: 2 LEVENLSKVYPNGKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSILL 61
Query: 400 DDIDTEDV---PLSKLRSNISIIPQD-----------PVL-----FSGTLRKNLDPFEKY 440
+ D + L KLR I +I Q VL + T R L F +
Sbjct: 62 EGTDITKLRGKKLRKLRRRIGMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFSEE 121
Query: 441 PDYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDE 500
+AL+ V L D Y+ S GQ+Q + +ARA+ + +++ DE
Sbjct: 122 DKERALSALERVGLADK----------AYQRADQLSGGQQQRVAIARALAQQPDLILADE 171
Query: 501 ATANVDPKT-----DLLIQRTIRKKFADCTVLTIAHRLHTIMD-SDKVLVMDSG 548
A++DPKT D L + I K+ ++ + H++ +D+++ + +G
Sbjct: 172 PIASLDPKTSKQVMDYL--KRINKEDGITVIINL-HQVDLAKKYADRIVGLKAG 222
>gnl|CDD|213228 cd03261, ABC_Org_Solvent_Resistant, ATP-binding cassette transport
system involved in resistant to organic solvents. ABC
transporters are a large family of proteins involved in
the transport of a wide variety of different compounds,
like sugars, ions, peptides, and more complex organic
molecules. The nucleotide binding domain shows the
highest similarity between all members of the family.
ABC transporters are a subset of nucleotide hydrolases
that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing proteins.
Length = 235
Score = 86.0 bits (214), Expect = 5e-19
Identities = 60/221 (27%), Positives = 105/221 (47%), Gaps = 21/221 (9%)
Query: 341 IEFQNTNVRYLSGPRVI-KNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAE-VEGVIK 398
IE + + G R + K +++ + E + I+G +G+GKS+L+ I L G +
Sbjct: 1 IELRGLTKSF--GGRTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVL 58
Query: 399 IDDIDTEDV---PLSKLRSNISIIPQDPVLFSG-TLRKNLD-PFEKYPDYVLWTALQEVE 453
ID D + L +LR + ++ Q LF T+ +N+ P ++ T L E E
Sbjct: 59 IDGEDISGLSEAELYRLRRRMGMLFQSGALFDSLTVFENVAFPLREH------TRLSEEE 112
Query: 454 LKDMIMEG---AGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATANVDPKTD 510
++++++E GL S G ++ + LARA+ + +L+ DE TA +DP
Sbjct: 113 IREIVLEKLEAVGLRGAEDLYPAELSGGMKKRVALARALALDPELLLYDEPTAGLDPIAS 172
Query: 511 LLIQRTIR--KKFADCTVLTIAHRLHTIMD-SDKVLVMDSG 548
+I IR KK T + + H L T +D++ V+ G
Sbjct: 173 GVIDDLIRSLKKELGLTSIMVTHDLDTAFAIADRIAVLYDG 213
>gnl|CDD|226646 COG4178, COG4178, ABC-type uncharacterized transport system,
permease and ATPase components [General function
prediction only].
Length = 604
Score = 89.3 bits (222), Expect = 1e-18
Identities = 54/208 (25%), Positives = 96/208 (46%), Gaps = 39/208 (18%)
Query: 339 GKIEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAEV----E 394
I +N ++R G ++ LN + P E++ I G +GAGK+SL+ A+ A +
Sbjct: 391 HGITLENLSLRTPDGQTLLSELNFEVRPGERLLITGESGAGKTSLLRAL---AGLWPWGS 447
Query: 395 GVIKIDDIDTEDVPLSKLRSNISIIPQDPVLFSGTLRKNL---DPFEKYPDYVLWTALQE 451
G I + S + +PQ P L GTLR+ L + + D L L +
Sbjct: 448 GRISMPA-----------DSALLFLPQRPYLPQGTLREALCYPNAAPDFSDAELVAVLHK 496
Query: 452 VELKDMI--MEGAG-----LNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATAN 504
V L D+ ++ L S G++Q + AR ++ + LDEAT+
Sbjct: 497 VGLGDLAERLDEEDRWDRVL-----------SGGEQQRLAFARLLLHKPKWVFLDEATSA 545
Query: 505 VDPKTDLLIQRTIRKKFADCTVLTIAHR 532
+D +T+ + + ++++ D TV+++ HR
Sbjct: 546 LDEETEDRLYQLLKEELPDATVISVGHR 573
>gnl|CDD|237452 PRK13632, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 271
Score = 85.4 bits (212), Expect = 2e-18
Identities = 60/227 (26%), Positives = 108/227 (47%), Gaps = 35/227 (15%)
Query: 341 IEFQNTNVRYLSG-PRVIKNLNITIHPKEKIGIVGRTGAGKSS---LIAAIFRLAEVEGV 396
I+ +N + Y + +KN++ I+ E + I+G G+GKS+ ++ + + G
Sbjct: 8 IKVENVSFSYPNSENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQS--GE 65
Query: 397 IKIDDIDTEDVPLSKLRSNISIIPQDP------------VLFSGTLRKNLDPFEKYPDYV 444
IKID I L ++R I II Q+P + F G K + P +K D +
Sbjct: 66 IKIDGITISKENLKEIRKKIGIIFQNPDNQFIGATVEDDIAF-GLENKKVPP-KKMKDII 123
Query: 445 LWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATAN 504
A ++V ++D + + N S GQ+Q + +A + N I++ DE+T+
Sbjct: 124 DDLA-KKVGMEDYLDKEP----------QNLSGGQKQRVAIASVLALNPEIIIFDESTSM 172
Query: 505 VDP--KTDLL-IQRTIRKKFADCTVLTIAHRLHTIMDSDKVLVMDSG 548
+DP K ++ I +RK T+++I H + + +DKV+V G
Sbjct: 173 LDPKGKREIKKIMVDLRKT-RKKTLISITHDMDEAILADKVIVFSEG 218
>gnl|CDD|213259 cd03292, ABC_FtsE_transporter, ATP-binding cassette domain of the
cell division transporter. FtsE is a hydrophilic
nucleotide-binding protein that binds FtsX to form a
heterodimeric ATP-binding cassette (ABC)-type
transporter that associates with the bacterial inner
membrane. The FtsE/X transporter is thought to be
involved in cell division and is important for assembly
or stability of the septal ring.
Length = 214
Score = 82.8 bits (205), Expect = 5e-18
Identities = 58/199 (29%), Positives = 95/199 (47%), Gaps = 13/199 (6%)
Query: 341 IEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAE-VEGVIKI 399
IEF N Y +G + +NI+I E + +VG +GAGKS+L+ I++ G I++
Sbjct: 1 IEFINVTKTYPNGTAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRV 60
Query: 400 DDIDTEDVP---LSKLRSNISIIPQDPVLFSGTLRKNLDPFEK--YPDYVLWTALQEVEL 454
+ D D+ + LR I ++ QD L + + +E + V +E+
Sbjct: 61 NGQDVSDLRGRAIPYLRRKIGVVFQDFRLLP-----DRNVYENVAFALEVTGVPPREIRK 115
Query: 455 K-DMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATANVDPKTDLLI 513
+ +E GL+ S G++Q + +ARAIV + IL+ DE T N+DP T I
Sbjct: 116 RVPAALELVGLSHKHRALPAELSGGEQQRVAIARAIVNSPTILIADEPTGNLDPDTTWEI 175
Query: 514 QRTIRK-KFADCTVLTIAH 531
++K A TV+ H
Sbjct: 176 MNLLKKINKAGTTVVVATH 194
>gnl|CDD|224049 COG1124, DppF, ABC-type dipeptide/oligopeptide/nickel transport
system, ATPase component [Amino acid transport and
metabolism / Inorganic ion transport and metabolism].
Length = 252
Score = 83.1 bits (206), Expect = 8e-18
Identities = 56/213 (26%), Positives = 96/213 (45%), Gaps = 28/213 (13%)
Query: 355 RVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAEV-EGVIKID-DIDTEDVPLSKL 412
+ N+++ I E +GIVG +G+GKS+L + L + G I +D
Sbjct: 21 HALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSSGSILLDGKPLAPKKRAKAF 80
Query: 413 RSNISIIPQDPVLFSGTLRKNLDPFEKYPDYVLWTALQEVELKDM------IMEGAGLNM 466
+ ++ QDP +L+P +L L+ L +++ GL
Sbjct: 81 YRPVQMVFQDPY-------SSLNPRRTVGR-ILSEPLRPHGLSKSQQRIAELLDQVGLPP 132
Query: 467 TVYEGGTN-FSVGQRQLICLARAIVRNNVILVLDEATANVDPKT-----DLLIQRTIRKK 520
+ + + S GQRQ I +ARA++ +L+LDE T+ +D +LL+ ++K+
Sbjct: 133 SFLDRRPHELSGGQRQRIAIARALIPEPKLLILDEPTSALDVSVQAQILNLLL--ELKKE 190
Query: 521 FADCTVLTIAH--RLHTIMDSDKVLVMDSGVAV 551
T L I+H L M D++ VMD+G V
Sbjct: 191 R-GLTYLFISHDLALVEHM-CDRIAVMDNGQIV 221
>gnl|CDD|216049 pfam00664, ABC_membrane, ABC transporter transmembrane region.
This family represents a unit of six transmembrane
helices. Many members of the ABC transporter family
(pfam00005) have two such regions.
Length = 274
Score = 83.5 bits (207), Expect = 9e-18
Identities = 44/236 (18%), Positives = 86/236 (36%), Gaps = 11/236 (4%)
Query: 70 FSLIVGLFVAGISRSTAFYSA-------CMRCSKGIHKKMFEAVVYSPLAFFSTNPSGRI 122
SL + L G+ + + R K + + + ++ P++FF TN G +
Sbjct: 41 ISLAILLIAVGVLQGLLLQGSFYLGERLGQRIRKRLFRALLRQILGLPMSFFDTNSVGEL 100
Query: 123 LNRFSKDMGAVDEVLPKAMLDAAQGVMQVSGALIVSLSVNPLFSIPVLILLYLFWRLSKA 182
+R + D+ + + L + Q + V G IV ++ +L +L L LS
Sbjct: 101 TSRLTNDVSKIRDGLGDKLGLFFQSLATVVGGFIVMFYYGWKLTLVLLAILPLLILLSAV 160
Query: 183 YLRTSKSLKYLEGVTRSPVFTHLNACLHGLPTIRAHGAAKILVEEFDYHQDLHSSTWHLF 242
+ + L E + + L G+ T++A G + +E +D +
Sbjct: 161 LAKKLRKLNRKEQKAYAKAGSVAEESLSGIRTVKAFGREEYELERYDKALEDAEKAGIKK 220
Query: 243 VYTNMGFAYLIDFLCLLYLSTILISFF--FFADIGGKVGLAVTQTMTLMGVVQWAM 296
T + + YLS L +F + GG V ++L + +
Sbjct: 221 AITAGLSFGITQL--ISYLSYALALWFGAYLVISGGLSVGTVFAFLSLGLQLSGPL 274
>gnl|CDD|226164 COG3638, COG3638, ABC-type phosphate/phosphonate transport system,
ATPase component [Inorganic ion transport and
metabolism].
Length = 258
Score = 82.3 bits (204), Expect = 1e-17
Identities = 57/231 (24%), Positives = 105/231 (45%), Gaps = 33/231 (14%)
Query: 341 IEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAE-VEGVIKI 399
IE +N + Y G + +K++N+ I+ E + I+G +GAGKS+L+ ++ L + G I
Sbjct: 4 IEVKNLSKTYPGGHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEILF 63
Query: 400 DDIDTEDVP---LSKLRSNISIIPQDP-----------VLFS-----GTLRKNLDPFEKY 440
+ + + L KLR +I +I Q VL T R F K
Sbjct: 64 NGVQITKLKGKELRKLRRDIGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSKE 123
Query: 441 PDYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDE 500
AL+ V + D + A S GQ+Q + +ARA+V+ I++ DE
Sbjct: 124 DKAQALDALERVGILDKAYQRAS----------TLSGGQQQRVAIARALVQQPKIILADE 173
Query: 501 ATANVDPKTDLLIQRTIRK--KFADCTVLTIAHRLHTIMD-SDKVLVMDSG 548
A++DP++ + ++ + TV+ H++ +D+++ + +G
Sbjct: 174 PVASLDPESAKKVMDILKDINQEDGITVIVNLHQVDLAKKYADRIIGLKAG 224
>gnl|CDD|237648 PRK14250, PRK14250, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 241
Score = 81.8 bits (202), Expect = 2e-17
Identities = 63/200 (31%), Positives = 101/200 (50%), Gaps = 16/200 (8%)
Query: 340 KIEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAE-VEGVIK 398
+IEF+ + G ++K++++ IVG +GAGKS+LI I RL + EG I
Sbjct: 3 EIEFKEVSY-SSFGKEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSIL 61
Query: 399 IDDIDTEDVPLSKLRSNISIIPQDPVLFSGTLRKNLD--PFEKYPDYVLWTALQEVELKD 456
ID +D + + + LR I ++ Q P LF GT++ N++ P K V +VE
Sbjct: 62 IDGVDIKTIDVIDLRRKIGMVFQQPHLFEGTVKDNIEYGPMLKGEKNV------DVEY-- 113
Query: 457 MIMEGAGLNMT-VYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATANVDPKTDLLIQR 515
+ GLN N S G+ Q + +AR + N +L+LDE T+ +DP + +I+
Sbjct: 114 -YLSIVGLNKEYATRDVKNLSGGEAQRVSIARTLANNPEVLLLDEPTSALDPTSTEIIEE 172
Query: 516 TIR--KKFADCTVLTIAHRL 533
I K + TV+ I H +
Sbjct: 173 LIVKLKNKMNLTVIWITHNM 192
>gnl|CDD|106587 PRK13644, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 274
Score = 81.6 bits (201), Expect = 4e-17
Identities = 62/217 (28%), Positives = 107/217 (49%), Gaps = 8/217 (3%)
Query: 341 IEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAEVE-GVIKI 399
I +N + Y G ++N+N+ I E IGI+G+ G+GKS+L + L + G + +
Sbjct: 2 IRLENVSYSYPDGTPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLV 61
Query: 400 DDIDTEDVP-LSKLRSNISIIPQDP-VLFSG-TLRKNLDPFEKYPDYVLWTALQEVELKD 456
IDT D L +R + I+ Q+P F G T+ ++L F P+ + ++ + D
Sbjct: 62 SGIDTGDFSKLQGIRKLVGIVFQNPETQFVGRTVEEDL-AFG--PENLCLPPIEIRKRVD 118
Query: 457 MIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATANVDPKTDLLIQRT 516
+ GL + S GQ Q + LA + L+ DE T+ +DP + + +
Sbjct: 119 RALAEIGLEKYRHRSPKTLSGGQGQCVALAGILTMEPECLIFDEVTSMLDPDSGIAVLER 178
Query: 517 IRKKFADC-TVLTIAHRLHTIMDSDKVLVMDSGVAVV 552
I+K T++ I H L + D+D+++VMD G V+
Sbjct: 179 IKKLHEKGKTIVYITHNLEELHDADRIIVMDRGKIVL 215
>gnl|CDD|237455 PRK13637, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 287
Score = 80.9 bits (200), Expect = 9e-17
Identities = 67/233 (28%), Positives = 119/233 (51%), Gaps = 39/233 (16%)
Query: 341 IEFQNTNVRYLSG----PRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAE-VEG 395
I+ +N Y+ G + + N+NI I E +G++G TG+GKS+LI + L + G
Sbjct: 3 IKIENLTHIYMEGTPFEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSG 62
Query: 396 VIKIDDIDTED--VPLSKLRSNISIIPQDP--VLFSGTLRK-------NLDPFEKYPDYV 444
I ID +D D V LS +R + ++ Q P LF T+ K NL
Sbjct: 63 KIIIDGVDITDKKVKLSDIRKKVGLVFQYPEYQLFEETIEKDIAFGPINL---------- 112
Query: 445 LWTALQEVELKDMI---MEGAGLNMTVYEGGTNF--SVGQRQLICLARAIVRNNVILVLD 499
L E E+++ + M GL+ Y+ + F S GQ++ + +A + IL+LD
Sbjct: 113 ---GLSEEEIENRVKRAMNIVGLDYEDYKDKSPFELSGGQKRRVAIAGVVAMEPKILILD 169
Query: 500 EATANVDPKT--DLLIQ-RTIRKKFADCTVLTIAHRLHTIMD-SDKVLVMDSG 548
E TA +DPK ++L + + + K++ + T++ ++H + + +D+++VM+ G
Sbjct: 170 EPTAGLDPKGRDEILNKIKELHKEY-NMTIILVSHSMEDVAKLADRIIVMNKG 221
>gnl|CDD|240339 PTZ00265, PTZ00265, multidrug resistance protein (mdr1); Provisional.
Length = 1466
Score = 83.5 bits (206), Expect = 1e-16
Identities = 56/161 (34%), Positives = 93/161 (57%), Gaps = 12/161 (7%)
Query: 395 GVIKIDDIDTEDVPLSKLRSNISIIPQDPVLFSGTLRKNLD------PFEKYPDYVLWTA 448
G I +D +D D L LR+ SI+ Q+P+LF+ ++ +N+ E + A
Sbjct: 1277 GKILLDGVDICDYNLKDLRNLFSIVSQEPMLFNMSIYENIKFGKEDATREDVKRACKFAA 1336
Query: 449 LQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATANVDPK 508
+ E + + N+ Y G + S GQ+Q I +ARA++R IL+LDEAT+++D
Sbjct: 1337 IDE--FIESLPNKYDTNVGPY--GKSLSGGQKQRIAIARALLREPKILLLDEATSSLDSN 1392
Query: 509 TDLLIQRTIR--KKFADCTVLTIAHRLHTIMDSDKVLVMDS 547
++ LI++TI K AD T++TIAHR+ +I SDK++V ++
Sbjct: 1393 SEKLIEKTIVDIKDKADKTIITIAHRIASIKRSDKIVVFNN 1433
Score = 63.9 bits (155), Expect = 2e-10
Identities = 34/80 (42%), Positives = 52/80 (65%), Gaps = 2/80 (2%)
Query: 468 VYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATANVDPKTDLLIQRTIR--KKFADCT 525
V + S GQ+Q I +ARAI+RN IL+LDEAT+++D K++ L+Q+TI K +
Sbjct: 573 VGSNASKLSGGQKQRISIARAIIRNPKILILDEATSSLDNKSEYLVQKTINNLKGNENRI 632
Query: 526 VLTIAHRLHTIMDSDKVLVM 545
+ IAHRL TI ++ + V+
Sbjct: 633 TIIIAHRLSTIRYANTIFVL 652
Score = 62.0 bits (150), Expect = 7e-10
Identities = 50/152 (32%), Positives = 78/152 (51%), Gaps = 17/152 (11%)
Query: 307 ISVKRLVEYTK-LEPEGNL------SPNYE--DENEIWPVLGKIEFQNTNVRYLSGPRV- 356
I + + EY K LE +L P E D+ + + KI+F+N Y + V
Sbjct: 340 IILPNITEYMKSLEATNSLYEIINRKPLVENNDDGKKLKDIKKIQFKNVRFHYDTRKDVE 399
Query: 357 -IKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAE-VEGVIKIDDI-DTEDVPLSKLR 413
K+LN T+ + VG +G GKS+++ I RL + EG I I+D + +D+ L R
Sbjct: 400 IYKDLNFTLTEGKTYAFVGESGCGKSTILKLIERLYDPTEGDIIINDSHNLKDINLKWWR 459
Query: 414 SNISIIPQDPVLFSGTLRKNLDPFEKYPDYVL 445
S I ++ QDP+LFS +++ N+ KY Y L
Sbjct: 460 SKIGVVSQDPLLFSNSIKNNI----KYSLYSL 487
Score = 46.6 bits (110), Expect = 4e-05
Identities = 22/58 (37%), Positives = 36/58 (62%), Gaps = 2/58 (3%)
Query: 339 GKIEFQNTNVRYLSGPRV--IKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAEVE 394
GKIE + N RY+S P V K+L + K+ IVG TG+GKS++++ + R +++
Sbjct: 1164 GKIEIMDVNFRYISRPNVPIYKDLTFSCDSKKTTAIVGETGSGKSTVMSLLMRFYDLK 1221
>gnl|CDD|213231 cd03264, ABC_drug_resistance_like, ABC-type multidrug transport
system, ATPase component. The biological function of
this family is not well characterized, but display ABC
domains similar to members of ABCA subfamily. ABC
transporters are a large family of proteins involved in
the transport of a wide variety of different compounds,
like sugars, ions, peptides, and more complex organic
molecules. The nucleotide binding domain shows the
highest similarity between all members of the family.
ABC transporters are a subset of nucleotide hydrolases
that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing proteins.
Length = 211
Score = 78.4 bits (194), Expect = 1e-16
Identities = 55/216 (25%), Positives = 102/216 (47%), Gaps = 19/216 (8%)
Query: 341 IEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAE-VEGVIKI 399
++ +N RY R + +++T+ G++G GAGK++L+ + L G I+I
Sbjct: 1 LQLENLTKRYGKK-RALDGVSLTL-GPGMYGLLGPNGAGKTTLMRILATLTPPSSGTIRI 58
Query: 400 DDIDTEDVPLSKLRSNISIIPQDPVLFSGTLRKNLDPFEKYPDYVLWTALQEVELK---- 455
D D P KLR I +PQ+ + N E + DY+ W L+ + K
Sbjct: 59 DGQDVLKQP-QKLRRRIGYLPQEF-----GVYPNFTVRE-FLDYIAW--LKGIPSKEVKA 109
Query: 456 --DMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATANVDPKTDLLI 513
D ++E L + + S G R+ + +A+A+V + IL++DE TA +DP+ +
Sbjct: 110 RVDEVLELVNLGDRAKKKIGSLSGGMRRRVGIAQALVGDPSILIVDEPTAGLDPEERIRF 169
Query: 514 QRTIRKKFADCTVLTIAHRLHTIMDS-DKVLVMDSG 548
+ + + D V+ H + + ++V V++ G
Sbjct: 170 RNLLSELGEDRIVILSTHIVEDVESLCNQVAVLNKG 205
>gnl|CDD|213257 cd03290, ABCC_SUR1_N, ATP-binding cassette domain of the
sulfonylurea receptor, subfamily C. The SUR domain 1.
The sulfonylurea receptor SUR is an ATP transporter of
the ABCC/MRP family with tandem ATPase binding domains.
Unlike other ABC proteins, it has no intrinsic transport
function, neither active nor passive, but associates
with the potassium channel proteins Kir6.1 or Kir6.2 to
form the ATP-sensitive potassium (K(ATP)) channel.
Within the channel complex, SUR serves as a regulatory
subunit that fine-tunes the gating of Kir6.x in response
to alterations in cellular metabolism. It constitutes a
major pharmaceutical target as it binds numerous drugs,
K(ATP) channel openers and blockers, capable of up- or
down-regulating channel activity.
Length = 218
Score = 78.5 bits (193), Expect = 2e-16
Identities = 65/210 (30%), Positives = 105/210 (50%), Gaps = 17/210 (8%)
Query: 352 SGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIF-RLAEVEGVI----KIDDIDTED 406
SG + N+NI I + IVG+ G GKSSL+ AI + +EG + K + + +
Sbjct: 12 SGLATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEGKVHWSNKNESEPSFE 71
Query: 407 VPLSKLRSNISIIPQDPVLFSGTLRKNL---DPFEK--YPDYVLWTALQEVELKDMIMEG 461
S+ R +++ Q P L + T+ +N+ PF K Y +LQ D+ +
Sbjct: 72 ATRSRNRYSVAYAAQKPWLLNATVEENITFGSPFNKQRYKAVTDACSLQ----PDIDLLP 127
Query: 462 AGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATANVDPK-TDLLIQRTIRKK 520
G + E G N S GQRQ IC+ARA+ +N I+ LD+ + +D +D L+Q I K
Sbjct: 128 FGDQTEIGERGINLSGGQRQRICVARALYQNTNIVFLDDPFSALDIHLSDHLMQEGILKF 187
Query: 521 FAD--CTVLTIAHRLHTIMDSDKVLVMDSG 548
D T++ + H+L + +D ++ M G
Sbjct: 188 LQDDKRTLVLVTHKLQYLPHADWIIAMKDG 217
>gnl|CDD|213190 cd03223, ABCD_peroxisomal_ALDP, ATP-binding cassette domain of
peroxisomal transporter, subfamily D. Peroxisomal
ATP-binding cassette transporter (Pat) is involved in
the import of very long-chain fatty acids (VLCFA) into
the peroxisome. The peroxisomal membrane forms a
permeability barrier for a wide variety of metabolites
required for and formed during fatty acid
beta-oxidation. To communicate with the cytoplasm and
mitochondria, peroxisomes need dedicated proteins to
transport such hydrophilic molecules across their
membranes. X-linked adrenoleukodystrophy (X-ALD) is
caused by mutations in the ALD gene, which encodes ALDP
(adrenoleukodystrophy protein ), a peroxisomal integral
membrane protein that is a member of the ATP-binding
cassette (ABC) transporter protein family. The disease
is characterized by a striking and unpredictable
variation in phenotypic expression. Phenotypes include
the rapidly progressive childhood cerebral form (CCALD),
the milder adult form, adrenomyeloneuropathy (AMN), and
variants without neurologic involvement (i.e.
asymptomatic).
Length = 166
Score = 76.8 bits (190), Expect = 2e-16
Identities = 48/193 (24%), Positives = 84/193 (43%), Gaps = 47/193 (24%)
Query: 341 IEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAEV-EGVIKI 399
IE +N ++ G ++K+L+ I P +++ I G +G GKSSL A+ L G I +
Sbjct: 1 IELENLSLATPDGRVLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWPWGSGRIGM 60
Query: 400 DDIDTEDVPLSKLRSNISIIPQDPVLFSGTLRKNLDPFEKYPDYVLWTALQEVELKDMIM 459
P ++ +PQ P L GTLR+ L YP W
Sbjct: 61 --------PE---GEDLLFLPQRPYLPLGTLREQL----IYP----W------------- 88
Query: 460 EGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATANVDPKTDLLIQRTIRK 519
S G++Q + AR ++ + LDEAT+ +D +++ + + +++
Sbjct: 89 ------------DDVLSGGEQQRLAFARLLLHKPKFVFLDEATSALDEESEDRLYQLLKE 136
Query: 520 KFADCTVLTIAHR 532
TV+++ HR
Sbjct: 137 LGI--TVISVGHR 147
>gnl|CDD|213183 cd03216, ABC_Carb_Monos_I, First domain of the ATP-binding cassette
component of monosaccharide transport system. This
family represents the domain I of the carbohydrate
uptake proteins that transport only monosaccharides
(Monos). The Carb_Monos family is involved in the uptake
of monosaccharides, such as pentoses (such as xylose,
arabinose, and ribose) and hexoses (such as xylose,
arabinose, and ribose), that cannot be broken down to
simple sugars by hydrolysis. Pentoses include xylose,
arabinose, and ribose. Important hexoses include
glucose, galactose, and fructose. In members of the
Carb_monos family, the single hydrophobic gene product
forms a homodimer while the ABC protein represents a
fusion of two nucleotide-binding domains. However, it is
assumed that two copies of the ABC domains are present
in the assembled transporter.
Length = 163
Score = 76.3 bits (189), Expect = 3e-16
Identities = 52/215 (24%), Positives = 93/215 (43%), Gaps = 54/215 (25%)
Query: 341 IEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAEVEGVIKID 400
+E + R+ G + + +++++ E ++G GAGKS+L+ + G+ K D
Sbjct: 1 LELRGITKRF-GGVKALDGVSLSVRRGEVHALLGENGAGKSTLMKILS------GLYKPD 53
Query: 401 DIDTEDVPLSKLRSNISIIPQDPVLFSGTLRKNLDPFEKYPDYVLWTALQEVELKDMIME 460
+ +L G P + A +
Sbjct: 54 SGE--------------------ILVDGKEVSFASPRD---------ARR---------- 74
Query: 461 GAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATANVDPK-TDLLIQRTIRK 519
AG+ M VY+ SVG+RQ++ +ARA+ RN +L+LDE TA + P + L + R
Sbjct: 75 -AGIAM-VYQ----LSVGERQMVEIARALARNARLLILDEPTAALTPAEVERLFKVIRRL 128
Query: 520 KFADCTVLTIAHRLHTIMD-SDKVLVMDSGVAVVS 553
+ V+ I+HRL + + +D+V V+ G V +
Sbjct: 129 RAQGVAVIFISHRLDEVFEIADRVTVLRDGRVVGT 163
>gnl|CDD|224059 COG1136, SalX, ABC-type antimicrobial peptide transport system,
ATPase component [Defense mechanisms].
Length = 226
Score = 77.5 bits (192), Expect = 4e-16
Identities = 57/208 (27%), Positives = 98/208 (47%), Gaps = 25/208 (12%)
Query: 341 IEFQNTNVRYLSGP---RVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAEV-EGV 396
IE +N + Y G +K++N+ I E + IVG +G+GKS+L+ + L + G
Sbjct: 2 IELKNVSKIYGLGGEKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGE 61
Query: 397 IKIDDIDTEDVP---LSKLR-SNISIIPQD-PVLFSGTLRKNLD---PFEKYPDYVLWTA 448
+ I+ D + L+KLR I + Q+ +L T+ +N++ A
Sbjct: 62 VLINGKDLTKLSEKELAKLRRKKIGFVFQNFNLLPDLTVLENVELPLLIAGKSAGRRKRA 121
Query: 449 LQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATANVDPK 508
+E+ + E L E S GQ+Q + +ARA++ N I++ DE T N+D K
Sbjct: 122 AEELLEVLGL-EDRLLKKKPSE----LSGGQQQRVAIARALINNPKIILADEPTGNLDSK 176
Query: 509 T-----DLLIQRTIRKKFADCTVLTIAH 531
T +LL R + K+ T++ + H
Sbjct: 177 TAKEVLELL--RELNKER-GKTIIMVTH 201
>gnl|CDD|188099 TIGR00972, 3a0107s01c2, phosphate ABC transporter, ATP-binding
protein. This model represents the ATP-binding protein
of a family of ABC transporters for inorganic phosphate.
In the model species Escherichia coli, a constitutive
transporter for inorganic phosphate, with low affinity,
is also present. The high affinity transporter that
includes this polypeptide is induced when extracellular
phosphate concentrations are low. The proteins most
similar to the members of this family but not included
appear to be amino acid transporters [Transport and
binding proteins, Anions].
Length = 247
Score = 77.7 bits (192), Expect = 5e-16
Identities = 61/263 (23%), Positives = 122/263 (46%), Gaps = 37/263 (14%)
Query: 340 KIEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAE------V 393
IE +N N+ Y +KN+N+ I + ++G +G GKS+L+ ++ R+ + +
Sbjct: 1 AIEIENLNLFY-GEKEALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRI 59
Query: 394 EGVIKID--DIDTEDVPLSKLRSNISIIPQDPVLFSGTLRKNL--------DPFEKYPDY 443
EG + D DI + + + +LR + ++ Q P F ++ N+ +K D
Sbjct: 60 EGKVLFDGQDIYDKKIDVVELRRRVGMVFQKPNPFPMSIYDNIAYGPRLHGIKDKKELDE 119
Query: 444 VLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATA 503
++ +L++ L D + + + S GQ+Q +C+ARA+ +L+LDE T+
Sbjct: 120 IVEESLKKAALWDEVKDRLHDS------ALGLSGGQQQRLCIARALAVEPEVLLLDEPTS 173
Query: 504 NVDPKTDLLIQRTIRKKFADCTVLTIAHRL-HTIMDSDKVLVMDSGVAVVSSFGFFFSKD 562
+DP I+ I++ T++ + H + SD+ FF+ +
Sbjct: 174 ALDPIATGKIEELIQELKKKYTIVIVTHNMQQAARISDRT-------------AFFYDGE 220
Query: 563 LIEGTVSAKVLSSRKRREKEDRI 585
L+E + ++ ++ K + ED I
Sbjct: 221 LVEYGPTEQIFTNPKEKRTEDYI 243
>gnl|CDD|184597 PRK14270, PRK14270, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 251
Score = 77.7 bits (191), Expect = 6e-16
Identities = 61/262 (23%), Positives = 123/262 (46%), Gaps = 35/262 (13%)
Query: 340 KIEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRL------AEV 393
K+E +N N+ Y + + ++N+ I+ + ++G +G GKS+ + + R+ ++
Sbjct: 4 KMESKNLNLWY-GEKQALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKI 62
Query: 394 EGVIKID--DIDTEDVPLSKLRSNISIIPQDPVLFSGTLRKNLD--------PFEKYPDY 443
EG + +D +I +DV + +LR + ++ Q P F ++ N+ +K D
Sbjct: 63 EGEVLLDGKNIYDKDVDVVELRKRVGMVFQKPNPFPMSIYDNVAYGPRIHGIKDKKELDK 122
Query: 444 VLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATA 503
++ AL++ L D + + + + S GQ+Q +C+AR I ++++DE T+
Sbjct: 123 IVEWALKKAALWDEVKD------DLKKSALKLSGGQQQRLCIARTIAVKPDVILMDEPTS 176
Query: 504 NVDPKTDLLIQRTIRKKFADCTVLTIAHRLHTIMDSDKVLVMDSGVAVVSSFGFFFSKDL 563
+DP + L I+ + + + T++ + H M V FF DL
Sbjct: 177 ALDPISTLKIEDLMVELKKEYTIVIVTHN------------MQQASRVSDYTAFFLMGDL 224
Query: 564 IEGTVSAKVLSSRKRREKEDRI 585
IE + K+ +++E ED I
Sbjct: 225 IEFNKTEKIFLEPQKKETEDYI 246
>gnl|CDD|215650 pfam00005, ABC_tran, ABC transporter. ABC transporters for a large
family of proteins responsible for translocation of a
variety of compounds across biological membranes. ABC
transporters are the largest family of proteins in many
completely sequenced bacteria. ABC transporters are
composed of two copies of this domain and two copies of
a transmembrane domain pfam00664. These four domains may
belong to a single polypeptide as in human CFTR, or
belong in different polypeptide chains.
Length = 119
Score = 73.5 bits (181), Expect = 7e-16
Identities = 40/127 (31%), Positives = 60/127 (47%), Gaps = 12/127 (9%)
Query: 381 SSLIAAIFRLAE-VEGVIKIDDID-TEDVPLSKLRSNISIIPQDPVLF-SGTLRKNLDPF 437
S+L+ I L + G I +D D T LR I ++ QDP LF T+R+NL
Sbjct: 1 STLLKLITGLLQPTSGTILLDGEDGTGLSSRKLLRKRIGVVFQDPQLFPELTVRENLFFG 60
Query: 438 EKYPDYVLWTALQEVELKDMIMEGAGLNMTVY-EGGTNFSVGQRQLICLARAIVRNNVIL 496
+ + A E +E GL + E S GQ+Q + +ARA+++ +L
Sbjct: 61 LRDKE-----ADARAEE---ALERVGLPDFLDREPVGTLSGGQKQRVAIARALLKKPKLL 112
Query: 497 VLDEATA 503
+LDE TA
Sbjct: 113 LLDEPTA 119
>gnl|CDD|223487 COG0410, LivF, ABC-type branched-chain amino acid transport
systems, ATPase component [Amino acid transport and
metabolism].
Length = 237
Score = 76.7 bits (190), Expect = 9e-16
Identities = 56/227 (24%), Positives = 106/227 (46%), Gaps = 26/227 (11%)
Query: 341 IEFQNTNVRYLSGP-RVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAEV-EGVIK 398
+E +N + Y G + ++ +++ + E + ++GR GAGK++L+ I L G I
Sbjct: 4 LEVENLSAGY--GKIQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRII 61
Query: 399 IDDIDTEDVPLSKL-RSNISIIPQDPVLFSG-TLRKNLD-PFEKYPDYVLWTA-LQEV-- 452
D D +P + R I+ +P+ +F T+ +NL D L+EV
Sbjct: 62 FDGEDITGLPPHERARLGIAYVPEGRRIFPRLTVEENLLLGAYARRDKEAQERDLEEVYE 121
Query: 453 ---ELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATANVDPKT 509
LK+ + AG S G++Q++ +ARA++ +L+LDE + + PK
Sbjct: 122 LFPRLKERRNQRAG----------TLSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKI 171
Query: 510 DLLIQRTIR--KKFADCTVLTIAHRLHTIMD-SDKVLVMDSGVAVVS 553
I I+ +K T+L + ++ +D+ V+++G V+S
Sbjct: 172 VEEIFEAIKELRKEGGMTILLVEQNARFALEIADRGYVLENGRIVLS 218
>gnl|CDD|224052 COG1127, Ttg2A, ABC-type transport system involved in resistance to
organic solvents, ATPase component [Secondary
metabolites biosynthesis, transport, and catabolism].
Length = 263
Score = 77.2 bits (191), Expect = 1e-15
Identities = 62/221 (28%), Positives = 108/221 (48%), Gaps = 26/221 (11%)
Query: 340 KIEFQNTNVRYLSGPRVI-KNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRL-AEVEGVI 397
IE + + G RVI +++ + E + I+G +G+GKS+L+ I L +G I
Sbjct: 8 LIEVRGVTKSF--GDRVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEI 65
Query: 398 KIDDIDTEDVP---LSKLRSNISIIPQDPVLFSG-TLRKNLD-PFEKYPDYVLWTALQEV 452
ID D + L ++R + ++ Q LFS T+ +N+ P ++ T L E
Sbjct: 66 LIDGEDIPQLSEEELYEIRKRMGVLFQQGALFSSLTVFENVAFPLREH------TKLPES 119
Query: 453 ELKDMIM---EGAGLNMTVYEG-GTNFSVGQRQLICLARAIVRNNVILVLDEATANVDP- 507
++++++ E GL + + S G R+ + LARAI + +L LDE T+ +DP
Sbjct: 120 LIRELVLMKLELVGLRGAAADLYPSELSGGMRKRVALARAIALDPELLFLDEPTSGLDPI 179
Query: 508 ---KTDLLIQRTIRKKFADCTVLTIAHRLHTIMD-SDKVLV 544
D LI R + TV+ + H L +++ +D+V V
Sbjct: 180 SAGVIDELI-RELNDAL-GLTVIMVTHDLDSLLTIADRVAV 218
>gnl|CDD|182692 PRK10744, pstB, phosphate transporter ATP-binding protein;
Provisional.
Length = 260
Score = 77.0 bits (190), Expect = 1e-15
Identities = 70/268 (26%), Positives = 119/268 (44%), Gaps = 47/268 (17%)
Query: 340 KIEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAE------V 393
KI+ +N N Y +KN+N+ I + +G +G GKS+L+ R+ E
Sbjct: 13 KIQVRNLNF-YYGKFHALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRA 71
Query: 394 EGVIKID--DIDTEDVPLSKLRSNISIIPQDPVLFSGTLRKNL----DPFEKYP-----D 442
EG I +D +I T ++ LR+ + ++ Q P F ++ N+ FEK +
Sbjct: 72 EGEILLDGENILTPKQDIALLRAKVGMVFQKPTPFPMSIYDNIAFGVRLFEKLSRAEMDE 131
Query: 443 YVLWTALQEV----ELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAI-VRNNVILV 497
V W AL + E+KD + ++ G + S GQ+Q +C+AR I +R V+L
Sbjct: 132 RVEW-ALTKAALWNEVKDKL----------HQSGYSLSGGQQQRLCIARGIAIRPEVLL- 179
Query: 498 LDEATANVDPKTDLLIQRTIRKKFADCTVLTIAHRLHTIMDSDKVLVMDSGVAVVSSFGF 557
LDE + +DP + I+ I + D TV+ + H M F
Sbjct: 180 LDEPCSALDPISTGRIEELITELKQDYTVVIVTHN------------MQQAARCSDYTAF 227
Query: 558 FFSKDLIEGTVSAKVLSSRKRREKEDRI 585
+ +LIE + + + +++ ED I
Sbjct: 228 MYLGELIEFGNTDTIFTKPAKKQTEDYI 255
>gnl|CDD|225438 COG2884, FtsE, Predicted ATPase involved in cell division [Cell
division and chromosome partitioning].
Length = 223
Score = 76.1 bits (188), Expect = 1e-15
Identities = 58/225 (25%), Positives = 95/225 (42%), Gaps = 30/225 (13%)
Query: 341 IEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAEV-EGVIKI 399
I F+N + Y G +++++ I E + + G +GAGKS+L+ I+ G I +
Sbjct: 2 IRFENVSKAYPGGREALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKILV 61
Query: 400 DD-----IDTEDVPLSKLRSNISIIPQD-PVLFSGTLRKNL--------DPFEKYPDYVL 445
+ + ++P LR I ++ QD +L T+ +N+ P + V
Sbjct: 62 NGHDLSRLKGREIPF--LRRQIGVVFQDFRLLPDRTVYENVALPLRVIGKPPREIRRRVS 119
Query: 446 WTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATANV 505
L V LK L + S G++Q + +ARAIV +L+ DE T N+
Sbjct: 120 -EVLDLVGLKHKARA---LPSQL-------SGGEQQRVAIARAIVNQPAVLLADEPTGNL 168
Query: 506 DPKTDLLIQRTIRK-KFADCTVLTIAHRLHTIMDSDK-VLVMDSG 548
DP I R + TVL H L + VL ++ G
Sbjct: 169 DPDLSWEIMRLFEEINRLGTTVLMATHDLELVNRMRHRVLALEDG 213
>gnl|CDD|213193 cd03226, ABC_cobalt_CbiO_domain2, Second domain of the ATP-binding
cassette component of cobalt transport system. Domain
II of the ABC component of a cobalt transport family
found in bacteria, archaea, and eukaryota. The
transition metal cobalt is an essential component of
many enzymes and must be transported into cells in
appropriate amounts when needed. The CbiMNQO family ABC
transport system is involved in cobalt transport in
association with the cobalamin (vitamin B12)
biosynthetic pathways. Most cobalt (Cbi) transport
systems possess a separate CbiN component, the
cobalt-binding periplasmic protein, and they are encoded
by the conserved gene cluster cbiMNQO. Both the CbiM and
CbiQ proteins are integral cytoplasmic membrane
proteins, and the CbiO protein has the linker peptide
and the Walker A and B motifs commonly found in the
ATPase components of the ABC-type transport systems.
Length = 205
Score = 75.4 bits (186), Expect = 1e-15
Identities = 53/209 (25%), Positives = 96/209 (45%), Gaps = 15/209 (7%)
Query: 345 NTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRL-AEVEGVIKIDDID 403
N + Y G ++ +L++ ++ E I + G+ GAGK++L + L E G I ++
Sbjct: 4 NISFSYKKGTEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNG-- 61
Query: 404 TEDVPLSKLRSNISIIPQDP--VLFSGTLRKNLDPFEKYPDYVLWTALQEVELKDMIMEG 461
+ + + R +I + QD LF+ ++R+ L K D A E LKD+
Sbjct: 62 -KPIKAKERRKSIGYVMQDVDYQLFTDSVREELLLGLKELDAGNEQA--ETVLKDL---- 114
Query: 462 AGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATANVDPKTDLLIQRTIRK-K 520
L + S GQ+Q + +A A++ +L+ DE T+ +D K + IR+
Sbjct: 115 -DLYALKERHPLSLSGGQKQRLAIAAALLSGKDLLIFDEPTSGLDYKNMERVGELIRELA 173
Query: 521 FADCTVLTIAHRLHTIMD-SDKVLVMDSG 548
V+ I H + D+VL++ +G
Sbjct: 174 AQGKAVIVITHDYEFLAKVCDRVLLLANG 202
>gnl|CDD|226641 COG4172, COG4172, ABC-type uncharacterized transport system,
duplicated ATPase component [General function prediction
only].
Length = 534
Score = 79.6 bits (197), Expect = 1e-15
Identities = 65/220 (29%), Positives = 105/220 (47%), Gaps = 43/220 (19%)
Query: 355 RVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAEVEGVIKID--DIDTEDV-PLSK 411
R + +++T+ + +G+VG +G+GKS+L A+ RL +G I+ D DID +
Sbjct: 301 RAVDGISLTLRRGQTLGLVGESGSGKSTLGLALLRLIPSQGEIRFDGQDIDGLSRKEMRP 360
Query: 412 LRSNISIIPQDPVLFSGTL-----------------RKNLDPFEKYPDYVLWTALQEVEL 454
LR + ++ QDP G+L L E+ D + AL+EV L
Sbjct: 361 LRRRMQVVFQDPY---GSLSPRMTVGQIIEEGLRVHEPKLSAAER--DQRVIEALEEVGL 415
Query: 455 KDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATANVDPKT----- 509
+ A N +E FS GQRQ I +ARA++ +++LDE T+ +D
Sbjct: 416 -----DPATRNRYPHE----FSGGQRQRIAIARALILKPELILLDEPTSALDRSVQAQVL 466
Query: 510 DLLIQRTIRKKFADCTVLTIAHRLHTIMD-SDKVLVMDSG 548
DLL R +++K + L I+H L + +V+VM G
Sbjct: 467 DLL--RDLQQKH-GLSYLFISHDLAVVRALCHRVIVMRDG 503
Score = 53.4 bits (129), Expect = 2e-07
Identities = 55/242 (22%), Positives = 90/242 (37%), Gaps = 42/242 (17%)
Query: 341 IEFQNTNVRYLSGP---RVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRL------A 391
+ +N +V + +K ++ I E + +VG +G+GKS +I L A
Sbjct: 7 LSIRNLSVAFHQEGGTVEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAA 66
Query: 392 EVEGVIKIDDIDTEDVP---LSKLRSN-ISIIPQDPVLFSGTLRKNLDPFEK-----YPD 442
G I D D L +R N I +I Q+P+ +L+P
Sbjct: 67 HPSGSILFDGEDLLAASERQLRGVRGNKIGMIFQEPM-------TSLNPLHTIGKQLAEV 119
Query: 443 YVLWTALQEVELKDMIME----------GAGLNMTVYEGGTNFSVGQRQLICLARAIVRN 492
L L + +E L+ +E S GQRQ + +A A+
Sbjct: 120 LRLHRGLSRAAARARALELLELVGIPEPEKRLDAYPHE----LSGGQRQRVMIAMALANE 175
Query: 493 NVILVLDEATANVDPKTDLLIQRTIR--KKFADCTVLTIAHRLHTIMD-SDKVLVMDSGV 549
+L+ DE T +D I ++ + +L I H L + +D+V VM G
Sbjct: 176 PDLLIADEPTTALDVTVQAQILDLLKELQAELGMAILFITHDLGIVRKFADRVYVMQHGE 235
Query: 550 AV 551
V
Sbjct: 236 IV 237
>gnl|CDD|213262 cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cassette domain of
the osmoprotectant transporter. OpuCA is a the ATP
binding component of a bacterial solute transporter that
serves a protective role to cells growing in a
hyperosmolar environment. ABC (ATP-binding cassette)
transporter nucleotide-binding domain; ABC transporters
are a large family of proteins involved in the transport
of a wide variety of different compounds, like sugars,
ions, peptides, and more complex organic molecules. The
nucleotide binding domain shows the highest similarity
between all members of the family. ABC transporters are
a subset of nucleotide hydrolases that contain a
signature motif, Q-loop, and H-loop/switch region, in
addition, to the Walker A motif/P-loop and Walker B
motif commonly found in a number of ATP- and GTP-binding
and hydrolyzing proteins.
Length = 242
Score = 76.2 bits (188), Expect = 1e-15
Identities = 61/221 (27%), Positives = 105/221 (47%), Gaps = 22/221 (9%)
Query: 341 IEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAE-VEGVIKI 399
IEF+N RY G + + NLN+ I E + ++G +G+GK++ + I RL E G I I
Sbjct: 1 IEFENVTKRYGGGKKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFI 60
Query: 400 DDIDTEDVPLSKLRSNISIIPQDPVLFSG-TLRKN--LDP-FEKYPDYVLWTALQEVELK 455
D D + +LR I + Q LF T+ +N L P K+P + E+ L
Sbjct: 61 DGEDIREQDPVELRRKIGYVIQQIGLFPHMTVEENIALVPKLLKWPKEKIRERADEL-LA 119
Query: 456 DMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATANVDPKTD----- 510
+ ++ A Y S GQ+Q + +ARA+ + +L++DE +DP T
Sbjct: 120 LVGLDPAEF-ADRYPH--ELSGGQQQRVGVARALAADPPLLLMDEPFGALDPITRDQLQE 176
Query: 511 --LLIQRTIRKKFADCTVLTIAHRL-HTIMDSDKVLVMDSG 548
+Q+ + K T++ + H + +D++ +M +G
Sbjct: 177 EFKRLQQELGK-----TIVFVTHDIDEAFRLADRIAIMKNG 212
>gnl|CDD|224042 COG1117, PstB, ABC-type phosphate transport system, ATPase
component [Inorganic ion transport and metabolism].
Length = 253
Score = 76.4 bits (189), Expect = 2e-15
Identities = 64/267 (23%), Positives = 127/267 (47%), Gaps = 46/267 (17%)
Query: 340 KIEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRL------AEV 393
IE ++ N+ Y +K++N+ I + ++G +G GKS+L+ + R+ A V
Sbjct: 7 AIEVRDLNL-YYGDKHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARV 65
Query: 394 EGVIKID--DIDTEDVPLSKLRSNISIIPQDPVLFSGTLRKNLDPF--------EKYPDY 443
EG + +D +I V + +LR + ++ Q P F ++ N+ + +K D
Sbjct: 66 EGEVLLDGKNIYDPKVDVVELRRRVGMVFQKPNPFPMSIYDNV-AYGLRLHGIKDKELDE 124
Query: 444 VLWTALQEV----ELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLD 499
++ ++L++ E+KD + ++ S GQ+Q +C+ARA+ +L++D
Sbjct: 125 IVESSLKKAALWDEVKDRL----------HKSALGLSGGQQQRLCIARALAVKPEVLLMD 174
Query: 500 EATANVDPKTDLLIQRTIRKKFADCTVLTIAHRLHTIMDSDKVLVMDSGVAVVSSF-GFF 558
E T+ +DP + L I+ I + T++ + H + A VS + FF
Sbjct: 175 EPTSALDPISTLKIEELITELKKKYTIVIVTHNMQQ-------------AARVSDYTAFF 221
Query: 559 FSKDLIEGTVSAKVLSSRKRREKEDRI 585
+ +L+E + K+ ++ K + ED I
Sbjct: 222 YLGELVEFGPTDKIFTNPKHKRTEDYI 248
>gnl|CDD|213222 cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the
transporters involved in export of lipoprotein and
macrolide, and cell division protein. This family is
comprised of MJ0796 ATP-binding cassette,
macrolide-specific ABC-type efflux carrier (MacAB), and
proteins involved in cell division (FtsE), and release
of lipoproteins from the cytoplasmic membrane (LolCDE).
They are clustered together phylogenetically. MacAB is
an exporter that confers resistance to macrolides, while
the LolCDE system is not a transporter at all. An FtsE
null mutants showed filamentous growth and appeared
viable on high salt medium only, indicating a role for
FtsE in cell division and/or salt transport. The LolCDE
complex catalyzes the release of lipoproteins from the
cytoplasmic membrane prior to their targeting to the
outer membrane.
Length = 218
Score = 75.6 bits (187), Expect = 2e-15
Identities = 57/233 (24%), Positives = 103/233 (44%), Gaps = 42/233 (18%)
Query: 341 IEFQNTNVRYLSGPR---VIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAEV-EGV 396
IE +N + Y G +K ++++I E + IVG +G+GKS+L+ + L G
Sbjct: 1 IELKNLSKTYGGGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGE 60
Query: 397 IKIDDIDTEDVPLSKL----RSNISIIPQDPVLFSGTLRKNLDPFEKYPDYVLWTALQEV 452
+++D D + +L R +I + Q NL P TAL+ V
Sbjct: 61 VRVDGTDISKLSEKELAAFRRRHIGFVFQSF---------NLLPD--------LTALENV 103
Query: 453 ELKDMI---------------MEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILV 497
EL ++ +E GL + + S GQ+Q + +ARA+ + I++
Sbjct: 104 ELPLLLAGVPKKERRERAEELLERVGLGDRLNHYPSELSGGQQQRVAIARALANDPKIIL 163
Query: 498 LDEATANVDPKTDLLIQRTIRK--KFADCTVLTIAHRLHTIMDSDKVLVMDSG 548
DE T N+D +T + +R+ K A T++ + H +D+++ + G
Sbjct: 164 ADEPTGNLDSETGKEVMELLRELNKEAGTTIVVVTHDPELAEYADRIIELRDG 216
>gnl|CDD|224050 COG1125, OpuBA, ABC-type proline/glycine betaine transport systems,
ATPase components [Amino acid transport and metabolism].
Length = 309
Score = 76.6 bits (189), Expect = 3e-15
Identities = 62/220 (28%), Positives = 112/220 (50%), Gaps = 21/220 (9%)
Query: 341 IEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAE-VEGVIKI 399
IEF+N + RY + + ++N+TI E + ++G +G+GK++ + I RL E G I I
Sbjct: 2 IEFENVSKRY-GNKKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEILI 60
Query: 400 DDIDTEDVPLSKLRSNISIIPQDPVLFSG-TLRKNLDPFEKYPDYVLWTALQEVELKDMI 458
D D D+ +LR I + Q LF T+ +N+ P + W + + D +
Sbjct: 61 DGEDISDLDPVELRRKIGYVIQQIGLFPHLTVAENI---ATVPKLLGWDKERIKKRADEL 117
Query: 459 MEGAGLNMTVYEG--GTNFSVGQRQLICLARAIVRNNVILVLDEATANVDPKTDLLIQ-- 514
++ GL+ + Y S GQ+Q + +ARA+ + IL++DE +DP T +Q
Sbjct: 118 LDLVGLDPSEYADRYPHELSGGQQQRVGVARALAADPPILLMDEPFGALDPITRKQLQEE 177
Query: 515 -RTIRKKFADCTVLTIAHRLHTIMD-----SDKVLVMDSG 548
+ ++K+ T++ + H +D +D++ VMD+G
Sbjct: 178 IKELQKEL-GKTIVFVTHD----IDEALKLADRIAVMDAG 212
>gnl|CDD|172733 PRK14245, PRK14245, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 250
Score = 75.4 bits (185), Expect = 3e-15
Identities = 57/262 (21%), Positives = 115/262 (43%), Gaps = 35/262 (13%)
Query: 340 KIEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRL------AEV 393
KI+ ++ N Y +K +++ I K + +G +G GKS+ + R+ +
Sbjct: 3 KIDARDVNFWY-GDFHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRL 61
Query: 394 EGVIKID--DIDTEDVPLSKLRSNISIIPQDPVLFSGT--------LRKNLDPFEKYPDY 443
EG I+ID +I + V + +LR N+ ++ Q P F + LR N +
Sbjct: 62 EGEIRIDGRNIYDKGVQVDELRKNVGMVFQRPNPFPKSIFENVAYGLRVNGVKDNAFIRQ 121
Query: 444 VLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATA 503
+ L+ L D + + + E S GQ+Q +C+ARA+ + +L++DE +
Sbjct: 122 RVEETLKGAALWDEVKD------KLKESAFALSGGQQQRLCIARAMAVSPSVLLMDEPAS 175
Query: 504 NVDPKTDLLIQRTIRKKFADCTVLTIAHRLHTIMDSDKVLVMDSGVAVVSSFGFFFSKDL 563
+DP + ++ I + D T++ + H M V FF+ ++
Sbjct: 176 ALDPISTAKVEELIHELKKDYTIVIVTHN------------MQQAARVSDKTAFFYMGEM 223
Query: 564 IEGTVSAKVLSSRKRREKEDRI 585
+E + K+ ++ ++ ++ I
Sbjct: 224 VEYDDTKKIFTNPEKEATQNYI 245
>gnl|CDD|224053 COG1129, MglA, ABC-type sugar transport system, ATPase component
[Carbohydrate transport and metabolism].
Length = 500
Score = 77.6 bits (192), Expect = 5e-15
Identities = 56/234 (23%), Positives = 103/234 (44%), Gaps = 41/234 (17%)
Query: 341 IEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAEVEGVIKID 400
+E + + + G + + +++T+ P E ++G GAGKS+L+ + GV D
Sbjct: 9 LELRGISKSF-GGVKALDGVSLTVRPGEVHALLGENGAGKSTLMKILS------GVYPPD 61
Query: 401 D----IDTEDVPLSK----LRSNISIIPQDPVLFSGTLRKNLD----------PFEKYP- 441
ID + V S L + I+ + Q+ L NL P ++
Sbjct: 62 SGEILIDGKPVAFSSPRDALAAGIATVHQELSLV-----PNLSVAENIFLGREPTRRFGL 116
Query: 442 -DYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDE 500
D L + ++ + V + S+ QRQ++ +ARA+ + +L+LDE
Sbjct: 117 IDRKAMRRRARELLARLGLD-IDPDTLV----GDLSIAQRQMVEIARALSFDARVLILDE 171
Query: 501 ATANVDPK-TDLLIQRTIRKKFAD-CTVLTIAHRLHTIMD-SDKVLVMDSGVAV 551
TA + K T+ L IR+ A ++ I+HRL + + +D++ V+ G V
Sbjct: 172 PTAALTVKETERLF-DLIRRLKAQGVAIIYISHRLDEVFEIADRITVLRDGRVV 224
Score = 49.4 bits (119), Expect = 3e-06
Identities = 53/227 (23%), Positives = 91/227 (40%), Gaps = 39/227 (17%)
Query: 347 NVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAEVE-GVIKIDDID-- 403
VR LSG +++++ T+ E +GI G GAG++ L A+F G I +D
Sbjct: 265 EVRNLSGGGKVRDVSFTVRAGEILGIAGLVGAGRTELARALFGARPASSGEILLDGKPVR 324
Query: 404 ---------------TEDVPLSKLRSNISIIPQDPVLFSGTLRKNLDPFEKYPDYVLWTA 448
ED R + ++ + + TL +L F + ++
Sbjct: 325 IRSPRDAIKAGIAYVPED------RKSEGLVLDMSIAENITLA-SLRRFSRR--GLIDRR 375
Query: 449 LQEVELKDMI--ME--GAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATAN 504
+ + I + + S G +Q + LAR + + +L+LDE T
Sbjct: 376 KERALAERYIRRLRIKTPSPEQPI----GTLSGGNQQKVVLARWLATDPKVLILDEPTRG 431
Query: 505 VDPKTDLLIQRTIRKKFAD--CTVLTIAHRLHTIMD-SDKVLVMDSG 548
+D I R IR + A +L I+ L ++ SD++LVM G
Sbjct: 432 IDVGAKAEIYRLIR-ELAAEGKAILMISSELPELLGLSDRILVMREG 477
>gnl|CDD|213191 cd03224, ABC_TM1139_LivF_branched, ATP-binding cassette domain of
branched-chain amino acid transporter. LivF (TM1139) is
part of the LIV-I bacterial ABC-type two-component
transport system that imports neutral, branched-chain
amino acids. The E. coli branched-chain amino acid
transporter comprises a heterodimer of ABC transporters
(LivF and LivG), a heterodimer of six-helix TM domains
(LivM and LivH), and one of two alternative soluble
periplasmic substrate binding proteins (LivK or LivJ).
ABC transporters are a large family of proteins involved
in the transport of a wide variety of different
compounds, like sugars, ions, peptides, and more complex
organic molecules.
Length = 222
Score = 73.6 bits (182), Expect = 8e-15
Identities = 54/225 (24%), Positives = 104/225 (46%), Gaps = 34/225 (15%)
Query: 341 IEFQNTNVRYLSGP-RVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAEV-EGVIK 398
+E +N N Y G +++ +++T+ E + ++GR GAGK++L+ I L G I+
Sbjct: 1 LEVENLNAGY--GKSQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIR 58
Query: 399 IDDIDTEDVPLSK-LRSNISIIPQDPVLFSG-TLRKNL---------DPFEKYPDYVLWT 447
D D +P + R+ I +P+ +F T+ +NL + + V
Sbjct: 59 FDGRDITGLPPHERARAGIGYVPEGRRIFPELTVEENLLLGAYARRRAKRKARLERVY-- 116
Query: 448 ALQEV--ELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATANV 505
E+ LK+ + AG S G++Q++ +ARA++ +L+LDE + +
Sbjct: 117 ---ELFPRLKERRKQLAG----------TLSGGEQQMLAIARALMSRPKLLLLDEPSEGL 163
Query: 506 DPKTDLLIQRTIRK-KFADCTVLTIAHRLHTIMD-SDKVLVMDSG 548
PK I IR+ + T+L + ++ +D+ V++ G
Sbjct: 164 APKIVEEIFEAIRELRDEGVTILLVEQNARFALEIADRAYVLERG 208
>gnl|CDD|184586 PRK14240, PRK14240, phosphate transporter ATP-binding protein;
Provisional.
Length = 250
Score = 74.0 bits (182), Expect = 8e-15
Identities = 61/269 (22%), Positives = 125/269 (46%), Gaps = 47/269 (17%)
Query: 339 GKIEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAE------ 392
GKI ++ ++ Y + +K +N+ I + ++G +G GKS+ + + R+ +
Sbjct: 2 GKISVKDLDLFY-GDFQALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVK 60
Query: 393 VEGVIKID--DIDTEDVPLSKLRSNISIIPQDPVLFSGTLRKNL----------DPFEKY 440
+EG + +D DI D+ +++LR + ++ Q P F ++ N+ D +K
Sbjct: 61 IEGEVLLDGQDIYKSDIDVNQLRKRVGMVFQQPNPFPMSIYDNVAYGPRTHGIKD--KKK 118
Query: 441 PDYVLWTALQEV----ELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVIL 496
D ++ +L+ E+KD + + A S GQ+Q +C+ARA+ +L
Sbjct: 119 LDEIVEKSLKGAALWDEVKDRLKKSA----------LGLSGGQQQRLCIARALAVEPEVL 168
Query: 497 VLDEATANVDPKTDLLIQRTIRKKFADCTVLTIAHRLHTIMDSDKVLVMDSGVAVVSSFG 556
++DE T+ +DP + L I+ I++ D T++ + H M +
Sbjct: 169 LMDEPTSALDPISTLKIEELIQELKKDYTIVIVTHN------------MQQASRISDKTA 216
Query: 557 FFFSKDLIEGTVSAKVLSSRKRREKEDRI 585
FF + +++E + + ++ K + ED I
Sbjct: 217 FFLNGEIVEFGDTVDLFTNPKDKRTEDYI 245
>gnl|CDD|237651 PRK14266, PRK14266, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 250
Score = 73.8 bits (181), Expect = 1e-14
Identities = 65/266 (24%), Positives = 117/266 (43%), Gaps = 43/266 (16%)
Query: 340 KIEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAEV------ 393
+IE +N N Y ++KN+N+ I ++G +G GKS+ I + R+ ++
Sbjct: 3 RIEVENLNT-YFDDAHILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRH 61
Query: 394 EGVIKID--DIDTEDVPLSKLRSNISIIPQDPVLFSGTLRKNL------------DPFEK 439
EG I +D DI V + +LR + ++ Q P F ++ N+ D E+
Sbjct: 62 EGHIYLDGVDIYDPAVDVVELRKKVGMVFQKPNPFPKSIFDNVAYGLRIHGEDDEDFIEE 121
Query: 440 YPDYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLD 499
+ L A E+KD + + A S GQ+Q +C+AR I + ++++D
Sbjct: 122 RVEESLKAAALWDEVKDKLDKSA----------LGLSGGQQQRLCIARTIAVSPEVILMD 171
Query: 500 EATANVDPKTDLLIQRTIRKKFADCTVLTIAHRLHTIMDSDKVLVMDSGVAVVSSFGFFF 559
E + +DP + I+ I K D T++ + H M V FF
Sbjct: 172 EPCSALDPISTTKIEDLIHKLKEDYTIVIVTHN------------MQQATRVSKYTSFFL 219
Query: 560 SKDLIEGTVSAKVLSSRKRREKEDRI 585
+ ++IE ++ ++ + K + ED I
Sbjct: 220 NGEIIESGLTDQIFINPKDKRTEDYI 245
>gnl|CDD|131721 TIGR02673, FtsE, cell division ATP-binding protein FtsE. This
model describes FtsE, a member of the ABC transporter
ATP-binding protein family. This protein, and its
permease partner FtsX, localize to the division site. In
a number of species, the ftsEX gene pair is located next
to FtsY, the signal recognition particle-docking protein
[Cellular processes, Cell division].
Length = 214
Score = 72.3 bits (178), Expect = 2e-14
Identities = 52/211 (24%), Positives = 87/211 (41%), Gaps = 27/211 (12%)
Query: 341 IEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIF-RLAEVEGVIKI 399
IEF N + Y G + ++++ I E + + G +GAGK++L+ ++ L G ++I
Sbjct: 2 IEFHNVSKAYPGGVAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVRI 61
Query: 400 DDIDTEDVP---LSKLRSNISIIPQDPVLFSG---------TLRKNLDPFEKYPDYVLWT 447
D + L LR I ++ QD L L + V
Sbjct: 62 AGEDVNRLRGRQLPLLRRRIGVVFQDFRLLPDRTVYENVALPLEVRGKKEREIQRRV-GA 120
Query: 448 ALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATANVDP 507
AL++V L+ S G++Q + +ARAIV + +L+ DE T N+DP
Sbjct: 121 ALRQVGLEHKADAFPE----------QLSGGEQQRVAIARAIVNSPPLLLADEPTGNLDP 170
Query: 508 KTDLLIQRTIRKKFAD--CTVLTIAHRLHTI 536
I + K+ TV+ H L +
Sbjct: 171 DLSERILD-LLKRLNKRGTTVIVATHDLSLV 200
>gnl|CDD|184596 PRK14267, PRK14267, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 253
Score = 73.3 bits (180), Expect = 2e-14
Identities = 58/210 (27%), Positives = 98/210 (46%), Gaps = 27/210 (12%)
Query: 341 IEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRL------AEVE 394
IE N V Y S VIK +++ I ++G +G GKS+L+ RL A VE
Sbjct: 5 IETVNLRVYYGSN-HVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVE 63
Query: 395 GVIKI--DDIDTEDVPLSKLRSNISIIPQDP-----------VLFSGTLRKNLDPFEKYP 441
G +++ +I + DV ++R + ++ Q P V L + ++
Sbjct: 64 GEVRLFGRNIYSPDVDPIEVRREVGMVFQYPNPFPHLTIYDNVAIGVKLNGLVKSKKELD 123
Query: 442 DYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEA 501
+ V W AL++ L D + + + Y N S GQRQ + +ARA+ IL++DE
Sbjct: 124 ERVEW-ALKKAALWDEVKD----RLNDYPS--NLSGGQRQRLVIARALAMKPKILLMDEP 176
Query: 502 TANVDPKTDLLIQRTIRKKFADCTVLTIAH 531
TAN+DP I+ + + + T++ + H
Sbjct: 177 TANIDPVGTAKIEELLFELKKEYTIVLVTH 206
>gnl|CDD|226970 COG4619, COG4619, ABC-type uncharacterized transport system, ATPase
component [General function prediction only].
Length = 223
Score = 71.8 bits (176), Expect = 3e-14
Identities = 55/196 (28%), Positives = 86/196 (43%), Gaps = 22/196 (11%)
Query: 347 NVRYLSGPRVI-KNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRL-AEVEGVI--KIDDI 402
V YL+G I N+++++ E I I G +G GKS+L+ + L + G + + +D+
Sbjct: 8 QVGYLAGDAKILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDV 67
Query: 403 DTEDVPLSKLRSNISIIPQDPVLFSGTLRKNLD-PFE---KYPDYVLWTA-LQEVELKDM 457
T R +S Q P LF T+ NL P++ + PD L L D
Sbjct: 68 STLKPE--AYRQQVSYCAQTPALFGDTVEDNLIFPWQIRNRRPDRAAALDLLARFALPDS 125
Query: 458 IMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATANVDPKTDLLIQRTI 517
I+ + T S G++Q I L R + IL+LDE T+ +D I+ I
Sbjct: 126 ILT---------KNITELSGGEKQRIALIRNLQFMPKILLLDEITSALDESNKRNIEEMI 176
Query: 518 RKKFA--DCTVLTIAH 531
+ + VL I H
Sbjct: 177 HRYVREQNVAVLWITH 192
>gnl|CDD|172750 PRK14262, PRK14262, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 250
Score = 72.3 bits (177), Expect = 4e-14
Identities = 55/225 (24%), Positives = 108/225 (48%), Gaps = 24/225 (10%)
Query: 341 IEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAE------VE 394
IE +N + Y + +KN+ + I + I+G +G GK++L+ +I R+ + VE
Sbjct: 4 IEIENFSA-YYGEKKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVE 62
Query: 395 GVIKID--DIDTEDVPLSKLRSNISIIPQDPVLFSGTLRKNLD--------PFEKYPDYV 444
G I DI + +++ R + ++ Q P F ++ N+ + D +
Sbjct: 63 GKIYFKGQDIYDPQLDVTEYRKKVGMVFQKPTPFPMSIYDNVAFGPRIHGVKSKHKLDRI 122
Query: 445 LWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATAN 504
+ +L++ L D + LN + GT S GQ+Q +C+ARA+ +++LDE T+
Sbjct: 123 VEESLKKAALWDEVKSE--LN----KPGTRLSGGQQQRLCIARALAVEPEVILLDEPTSA 176
Query: 505 VDPKTDLLIQRTIRKKFADCTVLTIAHRL-HTIMDSDKVLVMDSG 548
+DP I++ + + + T++ + H + I +D + M G
Sbjct: 177 LDPIATQRIEKLLEELSENYTIVIVTHNIGQAIRIADYIAFMYRG 221
>gnl|CDD|172756 PRK14268, PRK14268, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 258
Score = 72.3 bits (177), Expect = 4e-14
Identities = 61/264 (23%), Positives = 117/264 (44%), Gaps = 40/264 (15%)
Query: 340 KIEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAE------V 393
+I+ +N N+ Y + +KN+++ I ++G +G GKS+ I + R+ + +
Sbjct: 12 QIKVENLNLWY-GEKQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRI 70
Query: 394 EGVIKID--DIDTEDVPLSKLRSNISIIPQDPVLFSGTLRKNLDPFEKYPDYVLWTALQE 451
EG + I+ DI DV + +LR N+ ++ Q P F P Y + +
Sbjct: 71 EGKVSIEGEDIYEPDVDVVELRKNVGMVFQKPNPF---------PMSIYDNVAYGPRIHG 121
Query: 452 VELKDM--IMEGAGLNMTVYEGGTN--------FSVGQRQLICLARAIVRNNVILVLDEA 501
KD+ ++E A + +++ ++ S GQ+Q +C+AR + I++ DE
Sbjct: 122 ANKKDLDGVVENALRSAALWDETSDRLKSPALSLSGGQQQRLCIARTLAVKPKIILFDEP 181
Query: 502 TANVDPKTDLLIQRTIRKKFADCTVLTIAHRLHTIMDSDKVLVMDSGVAVVSSFGFFFSK 561
T+ +DP + I+ I D T++ + H M + GFF
Sbjct: 182 TSALDPISTARIEDLIMNLKKDYTIVIVTHN------------MQQAARISDYTGFFLMG 229
Query: 562 DLIEGTVSAKVLSSRKRREKEDRI 585
+LIE + ++ + + + ED I
Sbjct: 230 ELIEFGQTRQIFHNPREKSTEDYI 253
>gnl|CDD|184590 PRK14249, PRK14249, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 251
Score = 72.0 bits (176), Expect = 5e-14
Identities = 58/262 (22%), Positives = 122/262 (46%), Gaps = 35/262 (13%)
Query: 340 KIEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRL------AEV 393
KI+ + N Y +V+KN+N+ ++ I+G +G GKS+L+ A+ R+ A +
Sbjct: 4 KIKIRGVNFFY-HKHQVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARL 62
Query: 394 EGVIKIDD--IDTEDVPLSKLRSNISIIPQDPVLFSGTLRKNLD--------PFEKYPDY 443
EG + +D+ I + ++ + LR + ++ Q P F ++ N+ + D
Sbjct: 63 EGAVLLDNENIYSPNLDVVNLRKRVGMVFQQPNPFPKSIFDNVAFGPRMLGTTAQSRLDE 122
Query: 444 VLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATA 503
V+ +L++ L D + + +++ G S GQ+Q +C+AR + ++++DE +
Sbjct: 123 VVEKSLRQAALWDEVKD------NLHKSGLALSGGQQQRLCIARVLAIEPEVILMDEPCS 176
Query: 504 NVDPKTDLLIQRTIRKKFADCTVLTIAHRLHTIMDSDKVLVMDSGVAVVSSFGFFFSKDL 563
+DP + + I+ +++ + T+ + H M GF + DL
Sbjct: 177 ALDPVSTMRIEELMQELKQNYTIAIVTHN------------MQQAARASDWTGFLLTGDL 224
Query: 564 IEGTVSAKVLSSRKRREKEDRI 585
+E + ++ S + + ED I
Sbjct: 225 VEYGRTGEIFSRPRDKRTEDYI 246
>gnl|CDD|172757 PRK14269, PRK14269, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 246
Score = 72.0 bits (176), Expect = 5e-14
Identities = 58/253 (22%), Positives = 120/253 (47%), Gaps = 32/253 (12%)
Query: 344 QNTNVRYLSGPR-VIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRL----AEVEGVIK 398
+ TN+ G + + ++N+ I + ++G +G GKS+ + R+ A+++G+++
Sbjct: 4 KTTNLNLFYGKKQALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVE 63
Query: 399 IDDIDTEDVPLSKLRSNISIIPQDPVLFSGTLRKNLDPFEKY---------PDYVLWTAL 449
I+ D ++ + LR N+ ++ Q P +F ++ +N+ K + ++ L
Sbjct: 64 IEGKDVKNQDVVALRKNVGMVFQQPNVFVKSIYENISYAPKLHGMIKNKDEEEALVVDCL 123
Query: 450 QEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATANVDPKT 509
Q+V L + + + N GG Q+Q +C+ARA+ +L+LDE T+ +DP +
Sbjct: 124 QKVGLFEEVKDKLKQNALALSGG------QQQRLCIARALAIKPKLLLLDEPTSALDPIS 177
Query: 510 DLLIQRTIRKKFADCTVLTIAHRLHTIMDSDKVLVMDSGVAVVSSFGFFFSKDLIEGTVS 569
+I+ +++ ++H L IM + M G V FF +LIE S
Sbjct: 178 SGVIEELLKE---------LSHNLSMIMVTHN---MQQGKRVADYTAFFHLGELIEFGES 225
Query: 570 AKVLSSRKRREKE 582
+ + K+ + +
Sbjct: 226 KEFFENPKQEKTK 238
>gnl|CDD|213182 cd03215, ABC_Carb_Monos_II, Second domain of the ATP-binding
cassette component of monosaccharide transport system.
This family represents domain II of the carbohydrate
uptake proteins that transport only monosaccharides
(Monos). The Carb_Monos family is involved in the uptake
of monosaccharides, such as pentoses (such as xylose,
arabinose, and ribose) and hexoses (such as xylose,
arabinose, and ribose), that cannot be broken down to
simple sugars by hydrolysis. In members of Carb_Monos
family the single hydrophobic gene product forms a
homodimer, while the ABC protein represents a fusion of
two nucleotide-binding domains. However, it is assumed
that two copies of the ABC domains are present in the
assembled transporter.
Length = 182
Score = 70.2 bits (173), Expect = 6e-14
Identities = 58/212 (27%), Positives = 90/212 (42%), Gaps = 49/212 (23%)
Query: 348 VRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAEVE-GVIKIDDID-TE 405
VR LS +++++ + E +GI G G G++ L A+F L G I +D T
Sbjct: 7 VRGLSVKGAVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPPASGEITLDGKPVTR 66
Query: 406 DVPLSKLRSNISIIPQDPVLFSGTLRKNLDPFEKYPDYVLWTALQEVELKDMIMEGAGLN 465
P +R+ I+ +P+D RK EG L+
Sbjct: 67 RSPRDAIRAGIAYVPED--------RKR--------------------------EGLVLD 92
Query: 466 MTVYEGGTNFSVGQR------QLICLARAIVRNNVILVLDEATANVDPKTDLLIQRTIRK 519
++V E N ++ Q + LAR + R+ +L+LDE T VD I R IR
Sbjct: 93 LSVAE---NIALSSLLSGGNQQKVVLARWLARDPRVLILDEPTRGVDVGAKAEIYRLIR- 148
Query: 520 KFAD--CTVLTIAHRLHTIMD-SDKVLVMDSG 548
+ AD VL I+ L ++ D++LVM G
Sbjct: 149 ELADAGKAVLLISSELDELLGLCDRILVMYEG 180
>gnl|CDD|172748 PRK14260, PRK14260, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 259
Score = 72.0 bits (176), Expect = 6e-14
Identities = 61/264 (23%), Positives = 122/264 (46%), Gaps = 47/264 (17%)
Query: 350 YLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAEVEGVIKID--------D 401
Y + + I+ +++ I+ + I+G +G GKS+ I + R++E+EG +K++ +
Sbjct: 16 YYNTSKAIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVDFFGQN 75
Query: 402 IDTEDVPLSKLRSNISIIPQDPVLFSGTLRKNLDPFEKYPDYVLWTA--LQEVELKDMI- 458
I + +++LR I ++ Q P F ++ +N+ Y + + L + +L +++
Sbjct: 76 IYDPRININRLRRQIGMVFQRPNPFPMSIYENV-------AYGVRISAKLPQADLDEIVE 128
Query: 459 --MEGAGLNMTVYE----GGTNFSVGQRQLICLARAIVRNNVILVLDEATANVDPKTDLL 512
++GA L V + S GQ+Q +C+ARA+ +L++DE + +DP +
Sbjct: 129 SALKGAALWQEVKDKLNKSALGLSGGQQQRLCIARALAIKPKVLLMDEPCSALDPIATMK 188
Query: 513 IQRTIRKKFADCTVLTIAHRLHTIMDSDKVLVMDSGVAVVSSFGFFFSKD------LIEG 566
++ I ++ T+ + H + VS F FFS D ++E
Sbjct: 189 VEELIHSLRSELTIAIVTHNMQQ-------------ATRVSDFTAFFSTDESRIGQMVEF 235
Query: 567 TVSAKV----LSSRKRREKEDRIG 586
V+ ++ L SR R R G
Sbjct: 236 GVTTQIFSNPLDSRTRDYVSGRFG 259
>gnl|CDD|226929 COG4559, COG4559, ABC-type hemin transport system, ATPase component
[Inorganic ion transport and metabolism].
Length = 259
Score = 72.0 bits (177), Expect = 6e-14
Identities = 49/219 (22%), Positives = 99/219 (45%), Gaps = 14/219 (6%)
Query: 341 IEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIF-RLAEVEGVIKI 399
I +N + L+G R++ +++ + P E + I+G GAGKS+L+ A+ L+ G + +
Sbjct: 2 IRAENLSYS-LAGRRLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPDSGEVTL 60
Query: 400 DDIDTEDVPLSKLRSNISIIPQDPVL-FSGTLRKNLDPFEKYPDYVLWTALQEVELKDMI 458
+ + P +L + +++PQ+ L F T+++ + + P ++ +
Sbjct: 61 NGVPLNSWPPEELARHRAVLPQNSSLAFPFTVQEVVQ-MGRIPHRSGREPEEDERIAAQA 119
Query: 459 MEGAGLNMTVYEGGTNFSVGQRQLICLAR------AIVRNNVILVLDEATANVDPKTDLL 512
+ L+ S G++Q + LAR V + L LDE T+ +D
Sbjct: 120 LAATDLSGLAGRDYRTLSGGEQQRVQLARVLAQLWPPVPSGRWLFLDEPTSALDIAHQHH 179
Query: 513 IQRTIRKKFAD--CTVLTIAHRLH-TIMDSDKVLVMDSG 548
R R + A VL + H L+ +D+++++ G
Sbjct: 180 TLRLAR-QLAREGGAVLAVLHDLNLAAQYADRIVLLHQG 217
>gnl|CDD|223521 COG0444, DppD, ABC-type dipeptide/oligopeptide/nickel transport
system, ATPase component [Amino acid transport and
metabolism / Inorganic ion transport and metabolism].
Length = 316
Score = 72.2 bits (178), Expect = 8e-14
Identities = 63/245 (25%), Positives = 104/245 (42%), Gaps = 47/245 (19%)
Query: 341 IEFQNTNVRYLSGP---RVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRL------A 391
+E +N +V + + + + ++ + E +GIVG +G+GKS L AI L
Sbjct: 2 LEVKNLSVSFPTDAGVVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNAR 61
Query: 392 EVEGVIKIDDID----TEDVPLSKLR-SNISIIPQDPVL-----------FSGTLRKNLD 435
V G I D D +E L K+R I++I QDP+ + LR +
Sbjct: 62 IVGGEILFDGKDLLSLSEK-ELRKIRGKEIAMIFQDPMTSLNPVMTIGDQIAEVLRLHGK 120
Query: 436 PFEKYPDYVLWTA---LQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRN 492
K A L+ V + D L +E S G RQ + +A A+ N
Sbjct: 121 GLSK--KEAKERAIELLELVGIPD---PERRLKSYPHE----LSGGMRQRVMIAMALALN 171
Query: 493 NVILVLDEATANVDPKT-----DLLIQRTIRKKFADCTVLTIAHRLHTIMD-SDKVLVMD 546
+L+ DE T +D DLL + ++++ ++ I H L + + +D+V VM
Sbjct: 172 PKLLIADEPTTALDVTVQAQILDLL--KELQREK-GTALILITHDLGVVAEIADRVAVMY 228
Query: 547 SGVAV 551
+G V
Sbjct: 229 AGRIV 233
>gnl|CDD|226360 COG3840, ThiQ, ABC-type thiamine transport system, ATPase component
[Coenzyme metabolism].
Length = 231
Score = 70.8 bits (174), Expect = 9e-14
Identities = 60/211 (28%), Positives = 95/211 (45%), Gaps = 19/211 (9%)
Query: 360 LNITIHPKEKIGIVGRTGAGKSSLIAAI--FRLAEVEGVIKIDDIDTEDVPLSKLRSNIS 417
++T+ E + I+G +GAGKS+L+ I F G I I+ +D P + +S
Sbjct: 18 FDLTVPAGEIVAILGPSGAGKSTLLNLIAGF-ETPASGEILINGVDHTASPPA--ERPVS 74
Query: 418 IIPQDPVLFSG-TLRKNLDPFEKYPDYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFS 476
++ Q+ LF+ T+ +N+ P L A Q E + GL + S
Sbjct: 75 MLFQENNLFAHLTVAQNIG-LGLSPGLKL-NAEQR-EKVEAAAAQVGLAGFLKRLPGELS 131
Query: 477 VGQRQLICLARAIVRNNVILVLDEATANVDPK-----TDLLIQRTIRKKFADCTVLTIAH 531
GQRQ + LAR +VR IL+LDE + +DP L+ Q +K T+L + H
Sbjct: 132 GGQRQRVALARCLVREQPILLLDEPFSALDPALRAEMLALVSQLCDERKM---TLLMVTH 188
Query: 532 RLHTIMDS-DKVLVMDSG-VAVVSSFGFFFS 560
D+V+ +D+G +A S S
Sbjct: 189 HPEDAARIADRVVFLDNGRIAAQGSTQELLS 219
>gnl|CDD|184584 PRK14238, PRK14238, phosphate transporter ATP-binding protein;
Provisional.
Length = 271
Score = 71.4 bits (175), Expect = 1e-13
Identities = 64/263 (24%), Positives = 118/263 (44%), Gaps = 45/263 (17%)
Query: 344 QNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAEVEGVIKI---- 399
QN N+ Y +KN+N+ IH E I+G +G GKS+ I + R+ E+ +K
Sbjct: 28 QNLNLWY-GEDHALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKI 86
Query: 400 ----DDIDTEDVPLSKLRSNISIIPQDPVLFSGTLRKNLD--------PFEKYPDYVLWT 447
+I + + +LR+N+ ++ Q P F ++ N+ +K D ++
Sbjct: 87 LYRDQNIFDKSYSVEELRTNVGMVFQKPNPFPKSIYDNVTYGPKIHGIKDKKTLDEIVEK 146
Query: 448 ALQEV----ELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAI-VRNNVILVLDEAT 502
+L+ ELKD L+ Y S GQ+Q +C+AR + + +VIL +DE T
Sbjct: 147 SLRGAAIWDELKDR------LHDNAY----GLSGGQQQRLCIARCLAIEPDVIL-MDEPT 195
Query: 503 ANVDPKTDLLIQRTIRKKFADCTVLTIAHRLHTIMDSDKVLVMDSGVAVVSSFGFFFSKD 562
+ +DP + L ++ +++ D +++ + H M + FF +
Sbjct: 196 SALDPISTLKVEELVQELKKDYSIIIVTHN------------MQQAARISDKTAFFLNGY 243
Query: 563 LIEGTVSAKVLSSRKRREKEDRI 585
+ E + K+ S+ + ED I
Sbjct: 244 VNEYDDTDKIFSNPSDKRTEDYI 266
>gnl|CDD|184582 PRK14236, PRK14236, phosphate transporter ATP-binding protein;
Provisional.
Length = 272
Score = 71.2 bits (175), Expect = 1e-13
Identities = 66/268 (24%), Positives = 121/268 (45%), Gaps = 47/268 (17%)
Query: 340 KIEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRL------AEV 393
+E +N N+ Y + + ++++ I +G +G GKS+L+ R+ +
Sbjct: 25 ALEVRNLNLFY-GDKQALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRI 83
Query: 394 EGVIKID--DIDTEDVPLSKLRSNISIIPQDPVLFSGTLRKNLDPFEK--YPDYVLWTAL 449
EG I++D +I + V +++LR + ++ Q P +PF K Y + V L
Sbjct: 84 EGEIRLDGQNIYDKKVDVAELRRRVGMVFQRP-----------NPFPKSIYENVVYGLRL 132
Query: 450 QEVELK---DMIME----GAGLNMTV----YEGGTNFSVGQRQLICLARAIVRNNVILVL 498
Q + + D +E GA L V +E S GQ+Q + +ARAI +L+L
Sbjct: 133 QGINNRRVLDEAVERSLRGAALWDEVKDRLHENAFGLSGGQQQRLVIARAIAIEPEVLLL 192
Query: 499 DEATANVDPKTDLLIQRTIRKKFADCTVLTIAHRLHTIMDSDKVLVMDSGVAVVSSF-GF 557
DE T+ +DP + L I+ I + + T++ + H + A VS + F
Sbjct: 193 DEPTSALDPISTLKIEELITELKSKYTIVIVTHNMQQ-------------AARVSDYTAF 239
Query: 558 FFSKDLIEGTVSAKVLSSRKRREKEDRI 585
+ L+E + + +S +++ ED I
Sbjct: 240 MYMGKLVEYGDTDTLFTSPAKKQTEDYI 267
>gnl|CDD|184593 PRK14258, PRK14258, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 261
Score = 70.8 bits (173), Expect = 1e-13
Identities = 47/205 (22%), Positives = 105/205 (51%), Gaps = 24/205 (11%)
Query: 350 YLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAEVEGVIKID--------D 401
Y ++++ +++ I+ + I+G +G GKS+ + + R+ E+E ++++ +
Sbjct: 16 YYDTQKILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESEVRVEGRVEFFNQN 75
Query: 402 IDTEDVPLSKLRSNISIIPQDPVLFSGTLRKNLDPFEK----YP----DYVLWTALQEVE 453
I V L++LR +S++ P LF ++ N+ K P D ++ +AL++ +
Sbjct: 76 IYERRVNLNRLRRQVSMVHPKPNLFPMSVYDNVAYGVKIVGWRPKLEIDDIVESALKDAD 135
Query: 454 LKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATANVDPKTDLLI 513
L D I +++ + S GQ+Q +C+ARA+ +L++DE +DP + +
Sbjct: 136 LWDEIKH------KIHKSALDLSGGQQQRLCIARALAVKPKVLLMDEPCFGLDPIASMKV 189
Query: 514 QRTIRKKF--ADCTVLTIAHRLHTI 536
+ I+ ++ T++ ++H LH +
Sbjct: 190 ESLIQSLRLRSELTMVIVSHNLHQV 214
>gnl|CDD|213258 cd03291, ABCC_CFTR1, ATP-binding cassette domain of the cystic
fibrosis transmembrane regulator, subfamily C. The CFTR
subfamily domain 1. The cystic fibrosis transmembrane
regulator (CFTR), the product of the gene mutated in
patients with cystic fibrosis, has adapted the ABC
transporter structural motif to form a tightly regulated
anion channel at the apical surface of many epithelia.
Use of the term assembly of a functional ion channel
implies the coming together of subunits, or at least
smaller not-yet functional components of the active
whole. In fact, on the basis of current knowledge only
the CFTR polypeptide itself is required to form an ATP-
and protein kinase A-dependent low-conductance chloride
channel of the type present in the apical membrane of
many epithelial cells. CFTR displays the typical
organization (IM-ABC)2 and carries a characteristic
hydrophilic R-domain that separates IM1-ABC1 from
IM2-ABC2.
Length = 282
Score = 71.0 bits (174), Expect = 1e-13
Identities = 58/206 (28%), Positives = 101/206 (49%), Gaps = 17/206 (8%)
Query: 346 TNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIF-RLAEVEGVIKIDDIDT 404
+N+ + P V+KN+N+ I E + I G TG+GK+SL+ I L EG IK
Sbjct: 43 SNLCLVGAP-VLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELEPSEGKIKHS---- 97
Query: 405 EDVPLSKLRSNISIIPQDPVLFSGTLRKNLDPFEKYPDYVLWTALQEVELKDMIMEGAGL 464
IS Q + GT+++N+ Y +Y + ++ +L++ I +
Sbjct: 98 ---------GRISFSSQFSWIMPGTIKENIIFGVSYDEYRYKSVVKACQLEEDITKFPEK 148
Query: 465 NMTVY-EGGTNFSVGQRQLICLARAIVRNNVILVLDEATANVDPKTDLLI-QRTIRKKFA 522
+ TV EGG S GQR I LARA+ ++ + +LD +D T+ I + + K A
Sbjct: 149 DNTVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEKEIFESCVCKLMA 208
Query: 523 DCTVLTIAHRLHTIMDSDKVLVMDSG 548
+ T + + ++ + +DK+L++ G
Sbjct: 209 NKTRILVTSKMEHLKKADKILILHEG 234
>gnl|CDD|213230 cd03263, ABC_subfamily_A, ATP-binding cassette domain of the lipid
transporters, subfamily A. The ABCA subfamily mediates
the transport of a variety of lipid compounds. Mutations
of members of ABCA subfamily are associated with human
genetic diseases, such as, familial high-density
lipoprotein (HDL) deficiency, neonatal surfactant
deficiency, degenerative retinopathies, and congenital
keratinization disorders. The ABCA1 protein is involved
in disorders of cholesterol transport and high-density
lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein
transports vitamin A derivatives in the outer segments
of photoreceptor cells, and therefore, performs a
crucial step in the visual cycle. The ABCA genes are not
present in yeast. However, evolutionary studies of ABCA
genes indicate that they arose as transporters that
subsequently duplicated and that certain sets of ABCA
genes were lost in different eukaryotic lineages.
Length = 220
Score = 69.8 bits (172), Expect = 1e-13
Identities = 48/228 (21%), Positives = 94/228 (41%), Gaps = 34/228 (14%)
Query: 341 IEFQNTNVRYLSGPR-VIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAEV-EGVIK 398
++ +N Y G + + +L++ ++ E G++G GAGK++ + + G
Sbjct: 1 LQIRNLTKTYKKGTKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAY 60
Query: 399 ID--DIDTEDVPLSKLRSNISIIPQDPVLFSG-TLRKNLDPFEKYPDYVLWTALQEVELK 455
I+ I T+ R ++ PQ LF T+R++L + L+ +
Sbjct: 61 INGYSIRTD---RKAARQSLGYCPQFDALFDELTVREHL---------RFYARLKGLPKS 108
Query: 456 DMIMEGAG----LNMTVYEG--GTNFSVGQRQLICLARAIVRNNVILVLDEATANVDPKT 509
++ E L +T S G ++ + LA A++ +L+LDE T+ +DP +
Sbjct: 109 EIKEEVELLLRVLGLTDKANKRARTLSGGMKRKLSLAIALIGGPSVLLLDEPTSGLDPAS 168
Query: 510 DLLIQRTIRKKFADCTV-LT---------IAHRLHTIMDSDKVLVMDS 547
I I + ++ LT + R+ IM K+ + S
Sbjct: 169 RRAIWDLILEVRKGRSIILTTHSMDEAEALCDRIA-IMSDGKLRCIGS 215
>gnl|CDD|172744 PRK14256, PRK14256, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 252
Score = 70.4 bits (172), Expect = 1e-13
Identities = 63/265 (23%), Positives = 122/265 (46%), Gaps = 40/265 (15%)
Query: 340 KIEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRL------AEV 393
K++ + NV + +K++++ I+G +G GKS+++ +I R+ A V
Sbjct: 4 KVKLEQLNVHFGKN-HAVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARV 62
Query: 394 EGVIKIDDIDTEDV---PLSKLRSNISIIPQDPVLFSG-TLRKNLDPFEKY--------P 441
G I +DD D D P+S +R + ++ Q P F ++ N+ K
Sbjct: 63 TGKILLDDTDIYDRGVDPVS-IRRRVGMVFQKPNPFPAMSIYDNVIAGYKLNGRVNRSEA 121
Query: 442 DYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEA 501
D ++ ++L+ V L D + + N GG Q+Q +C+AR I ++++DE
Sbjct: 122 DEIVESSLKRVALWDEVKDRLKSNAMELSGG------QQQRLCIARTIAVKPEVILMDEP 175
Query: 502 TANVDPKTDLLIQRTIRKKFADCTVLTIAHRLHTIMDSDKVLVMDSGVAVVSSF-GFFFS 560
+ +DP + L I+ I + T++ + H + A VS + FF+
Sbjct: 176 ASALDPISTLKIEELIEELKEKYTIIIVTHNMQQ-------------AARVSDYTAFFYM 222
Query: 561 KDLIEGTVSAKVLSSRKRREKEDRI 585
DL+E + K+ ++ ++++ ED I
Sbjct: 223 GDLVECGETKKIFTTPEKKQTEDYI 247
>gnl|CDD|184196 PRK13636, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 283
Score = 70.6 bits (173), Expect = 2e-13
Identities = 60/222 (27%), Positives = 99/222 (44%), Gaps = 17/222 (7%)
Query: 341 IEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFR-LAEVEGVIKI 399
++ + N Y G +K +NI I E I+G GAGKS+L + L G I
Sbjct: 6 LKVEELNYNYSDGTHALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRILF 65
Query: 400 DD--IDTEDVPLSKLRSNISIIPQDP--VLFSGTLRKNLDPFEKYPDYVLWTALQEVELK 455
D ID L KLR ++ ++ QDP LFS ++ ++ + L E E++
Sbjct: 66 DGKPIDYSRKGLMKLRESVGMVFQDPDNQLFSASV------YQDVSFGAVNLKLPEDEVR 119
Query: 456 ---DMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATANVDPKTDLL 512
D ++ G+ + S GQ++ + +A +V +LVLDE TA +DP
Sbjct: 120 KRVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLVLDEPTAGLDPMGVSE 179
Query: 513 IQRTIRK--KFADCTVLTIAHRLHTI-MDSDKVLVMDSGVAV 551
I + + + K T++ H + + + D V VM G +
Sbjct: 180 IMKLLVEMQKELGLTIIIATHDIDIVPLYCDNVFVMKEGRVI 221
>gnl|CDD|213235 cd03268, ABC_BcrA_bacitracin_resist, ATP-binding cassette domain of
the bacitracin-resistance transporter. The BcrA
subfamily represents ABC transporters involved in
peptide antibiotic resistance. Bacitracin is a
dodecapeptide antibiotic produced by B. licheniformis
and B. subtilis. The synthesis of bacitracin is
non-ribosomally catalyzed by a multi-enzyme complex
BcrABC. Bacitracin has potent antibiotic activity
against gram-positive bacteria. The inhibition of
peptidoglycan biosynthesis is the best characterized
bacterial effect of bacitracin. The bacitracin
resistance of B. licheniformis is mediated by the ABC
transporter Bcr which is composed of two identical BcrA
ATP-binding subunits and one each of the integral
membrane proteins, BcrB and BcrC. B. subtilis cells
carrying bcr genes on high-copy number plasmids develop
collateral detergent sensitivity, a similar phenomenon
in human cells with overexpressed multi-drug resistance
P-glycoprotein.
Length = 208
Score = 69.2 bits (170), Expect = 2e-13
Identities = 48/201 (23%), Positives = 85/201 (42%), Gaps = 19/201 (9%)
Query: 355 RVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRL-AEVEGVIKIDDIDTEDVPLSKLR 413
RV+ ++++ + E G +G GAGK++ + I L G I D + +
Sbjct: 14 RVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSYQK--NIEAL 71
Query: 414 SNISIIPQDPVLFSG-TLRKNLDPFEKY---PDYVLWTALQEVELKDMIMEGAGLNMTVY 469
I + + P + T R+NL + + L V LKD +
Sbjct: 72 RRIGALIEAPGFYPNLTARENLRLLARLLGIRKKRIDEVLDVVGLKDSAKKKVK------ 125
Query: 470 EGGTNFSVGQRQLICLARAIVRNNVILVLDEATANVDPKTDLLIQRTIRKKFAD-CTVLT 528
FS+G +Q + +A A++ N +L+LDE T +DP ++ I TVL
Sbjct: 126 ----GFSLGMKQRLGIALALLGNPDLLILDEPTNGLDPDGIKELRELILSLRDQGITVLI 181
Query: 529 IAHRLHTIMD-SDKVLVMDSG 548
+H L I +D++ +++ G
Sbjct: 182 SSHLLSEIQKVADRIGIINKG 202
>gnl|CDD|184585 PRK14239, PRK14239, phosphate transporter ATP-binding protein;
Provisional.
Length = 252
Score = 69.8 bits (171), Expect = 2e-13
Identities = 60/255 (23%), Positives = 114/255 (44%), Gaps = 40/255 (15%)
Query: 350 YLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAE------VEGVIKID--D 401
Y + + + ++++ +P E ++G +G+GKS+L+ +I R+ + + G I + +
Sbjct: 14 YYNKKKALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHN 73
Query: 402 IDTEDVPLSKLRSNISIIPQDPVLFSGTLRKNLDPFEKYPDYVLWTALQEVELKDMI--- 458
I + LR I ++ Q P F P Y + V L+ ++ K ++
Sbjct: 74 IYSPRTDTVDLRKEIGMVFQQPNPF---------PMSIYENVVYGLRLKGIKDKQVLDEA 124
Query: 459 ----MEGAGLNMTV----YEGGTNFSVGQRQLICLARAIVRNNVILVLDEATANVDPKTD 510
++GA + V ++ S GQ+Q +C+AR + + I++LDE T+ +DP +
Sbjct: 125 VEKSLKGASIWDEVKDRLHDSALGLSGGQQQRVCIARVLATSPKIILLDEPTSALDPISA 184
Query: 511 LLIQRTIRKKFADCTVLTIAHRLHTIMDSDKVLVMDSGVAVVSSFGFFFSKDLIEGTVSA 570
I+ T+ D T+L + M + GFF DLIE +
Sbjct: 185 GKIEETLLGLKDDYTMLLVTRS------------MQQASRISDRTGFFLDGDLIEYNDTK 232
Query: 571 KVLSSRKRREKEDRI 585
++ + K +E ED I
Sbjct: 233 QMFMNPKHKETEDYI 247
>gnl|CDD|184207 PRK13648, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 269
Score = 70.2 bits (172), Expect = 2e-13
Identities = 63/227 (27%), Positives = 113/227 (49%), Gaps = 35/227 (15%)
Query: 341 IEFQNTNVRYLS-GPRVIKNLNITIHPKEK-IGIVGRTGAGKSSLIAAIFRLAEV-EGVI 397
I F+N + +Y S +K+++ I PK + IVG G+GKS++ + + +V G I
Sbjct: 8 IVFKNVSFQYQSDASFTLKDVSFNI-PKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEI 66
Query: 398 KIDDIDTEDVPLSKLRSNISIIPQDP------------VLFSGTLRKNLDPFEKYPDYVL 445
++ D KLR +I I+ Q+P V F L + P+++ V
Sbjct: 67 FYNNQAITDDNFEKLRKHIGIVFQNPDNQFVGSIVKYDVAFG--LENHAVPYDEMHRRVS 124
Query: 446 WTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATANV 505
AL++V++ L YE S GQ+Q + +A + N +++LDEAT+ +
Sbjct: 125 -EALKQVDM---------LERADYEPNA-LSGGQKQRVAIAGVLALNPSVIILDEATSML 173
Query: 506 DP--KTDL--LIQRTIRKKFADCTVLTIAHRLHTIMDSDKVLVMDSG 548
DP + +L L+++ + + T+++I H L M++D V+VM+ G
Sbjct: 174 DPDARQNLLDLVRKVKSEH--NITIISITHDLSEAMEADHVIVMNKG 218
>gnl|CDD|223488 COG0411, LivG, ABC-type branched-chain amino acid transport
systems, ATPase component [Amino acid transport and
metabolism].
Length = 250
Score = 69.1 bits (170), Expect = 4e-13
Identities = 49/216 (22%), Positives = 97/216 (44%), Gaps = 25/216 (11%)
Query: 353 GPRVIKNLNITIHPKEKIGIVGRTGAGKS---SLIAAIFRLAEVEGVIKIDDIDTEDVPL 409
G + ++++ + P E +G++G GAGK+ +LI ++ + G + D +P
Sbjct: 16 GLTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPS--SGTVIFRGRDITGLPP 73
Query: 410 SKL------RS--NISIIPQ----DPVLFSGTLRKNLDPFEKYPDYVLWTALQEVELKDM 457
++ R+ + P + V R L P +E +
Sbjct: 74 HRIARLGIARTFQITRLFPGLTVLENVAVGAHARLGLSGLLGRPRA--RKEEREARERAR 131
Query: 458 -IMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATANVDPK-TDLLIQ- 514
++E GL N S GQ++ + +ARA+ +L+LDE A ++P+ T+ L +
Sbjct: 132 ELLEFVGLGELADRPAGNLSYGQQRRLEIARALATQPKLLLLDEPAAGLNPEETEELAEL 191
Query: 515 -RTIRKKFADCTVLTIAHRLHTIMD-SDKVLVMDSG 548
R +R + T+L I H + +M +D+++V++ G
Sbjct: 192 IRELRDRG-GVTILLIEHDMKLVMGLADRIVVLNYG 226
>gnl|CDD|184209 PRK13650, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 279
Score = 69.4 bits (170), Expect = 5e-13
Identities = 79/248 (31%), Positives = 123/248 (49%), Gaps = 39/248 (15%)
Query: 341 IEFQNTNVRYLSGPRVIKNLNITIHPK--EKIGIVGRTGAGKSSLIAAIFRLAEVE-GVI 397
IE +N +Y +++ H K E + I+G G+GKS+ + I L E E G I
Sbjct: 5 IEVKNLTFKYKEDQEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQI 64
Query: 398 KID-DIDTEDVPLSKLRSNISIIPQDP------------VLFSGTLRKNLDPFEKYPDYV 444
ID D+ TE+ + +R I ++ Q+P V F G K + P E+ + V
Sbjct: 65 IIDGDLLTEE-NVWDIRHKIGMVFQNPDNQFVGATVEDDVAF-GLENKGI-PHEEMKERV 121
Query: 445 LWTALQEVELKDMIM-EGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATA 503
AL+ V ++D E A L S GQ+Q + +A A+ I++LDEAT+
Sbjct: 122 N-EALELVGMQDFKEREPARL-----------SGGQKQRVAIAGAVAMRPKIIILDEATS 169
Query: 504 NVDPKTDL-LIQ--RTIRKKFADCTVLTIAHRLHTIMDSDKVLVMDSG-VAVVSSFGFFF 559
+DP+ L LI+ + IR + TV++I H L + SD+VLVM +G V S+ F
Sbjct: 170 MLDPEGRLELIKTIKGIRDDY-QMTVISITHDLDEVALSDRVLVMKNGQVESTSTPRELF 228
Query: 560 SK--DLIE 565
S+ DL++
Sbjct: 229 SRGNDLLQ 236
>gnl|CDD|184195 PRK13635, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 279
Score = 69.3 bits (170), Expect = 5e-13
Identities = 59/224 (26%), Positives = 106/224 (47%), Gaps = 27/224 (12%)
Query: 340 KIEFQNTNVRYLSGPR-VIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAEVE-GVI 397
I ++ + RY +K+++ +++ E + IVG G+GKS+L + L E G I
Sbjct: 5 IIRVEHISFRYPDAATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTI 64
Query: 398 KIDDIDTEDVPLSKLRSNISIIPQDP-VLFSGT---------LRKNLDPFEKYPDYVLWT 447
+ + + + +R + ++ Q+P F G L P E+ + V
Sbjct: 65 TVGGMVLSEETVWDVRRQVGMVFQNPDNQFVGATVQDDVAFGLENIGVPREEMVERVDQ- 123
Query: 448 ALQEVELKD-MIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATANVD 506
AL++V ++D + E L S GQ+Q + +A + I++LDEAT+ +D
Sbjct: 124 ALRQVGMEDFLNREPHRL-----------SGGQKQRVAIAGVLALQPDIIILDEATSMLD 172
Query: 507 PKTDLLIQRTIR--KKFADCTVLTIAHRLHTIMDSDKVLVMDSG 548
P+ + T+R K+ TVL+I H L +D+V+VM+ G
Sbjct: 173 PRGRREVLETVRQLKEQKGITVLSITHDLDEAAQADRVIVMNKG 216
>gnl|CDD|237647 PRK14248, PRK14248, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 268
Score = 69.2 bits (169), Expect = 5e-13
Identities = 57/261 (21%), Positives = 120/261 (45%), Gaps = 35/261 (13%)
Query: 341 IEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRL------AEVE 394
+E ++ ++ Y R + ++++ I ++G +G GKS+ + +I R+ A E
Sbjct: 22 LEVKDLSI-YYGEKRAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSE 80
Query: 395 GVIKID--DIDTEDVPLSKLRSNISIIPQDPVLFSGTLRKNLDPFEKYP--------DYV 444
G I + +I ++ + LR I ++ Q P F ++ N+ KY D +
Sbjct: 81 GEILYEGLNILDSNINVVNLRREIGMVFQKPNPFPKSIYNNITHALKYAGERRKSVLDEI 140
Query: 445 LWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATAN 504
+ +L + L D + + ++ + S GQ+Q +C+AR + +L+LDE +
Sbjct: 141 VEESLTKAALWDEVKD------RLHSSALSLSGGQQQRLCIARTLAMKPAVLLLDEPASA 194
Query: 505 VDPKTDLLIQRTIRKKFADCTVLTIAHRLHTIMDSDKVLVMDSGVAVVSSFGFFFSKDLI 564
+DP ++ I+ I + + +++ + H M + V FF + DL+
Sbjct: 195 LDPISNAKIEELITELKEEYSIIIVTHN------------MQQALRVSDRTAFFLNGDLV 242
Query: 565 EGTVSAKVLSSRKRREKEDRI 585
E + ++ +S K+++ ED I
Sbjct: 243 EYDQTEQIFTSPKQQKTEDYI 263
>gnl|CDD|213180 cd03213, ABCG_EPDR, Eye pigment and drug resistance transporter
subfamily G of the ATP-binding cassette superfamily.
ABCG transporters are involved in eye pigment (EP)
precursor transport, regulation of lipid-trafficking
mechanisms, and pleiotropic drug resistance (DR). DR is
a well-described phenomenon occurring in fungi and
shares several similarities with processes in bacteria
and higher eukaryotes. Compared to other members of the
ABC transporter subfamilies, the ABCG transporter family
is composed of proteins that have an ATP-binding
cassette domain at the N-terminus and a TM
(transmembrane) domain at the C-terminus.
Length = 194
Score = 67.6 bits (166), Expect = 6e-13
Identities = 51/202 (25%), Positives = 91/202 (45%), Gaps = 44/202 (21%)
Query: 355 RVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAI---FRLAEVEGVIKIDDIDTEDVPLSK 411
+++KN++ P E I+G +GAGKS+L+ A+ V G + I+ +
Sbjct: 23 QLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLGVSGEVLINGR---PLDKRS 79
Query: 412 LRSNISIIPQDPVLFSG-TLRKNLDPFEKYPDYVLWTALQEVELKDMIMEGAGLNMTVYE 470
R I +PQD +L T+R+ L + A +L+ GL
Sbjct: 80 FRKIIGYVPQDDILHPTLTVRETLM----------FAA----KLR-------GL------ 112
Query: 471 GGTNFSVGQRQLICLARAIVRNNVILVLDEATANVDPKTDLLIQRTIRKKFAD--CTVLT 528
S G+R+ + +A +V N +L LDE T+ +D + L + +R + AD T++
Sbjct: 113 -----SGGERKRVSIALELVSNPSLLFLDEPTSGLDSSSALQVMSLLR-RLADTGRTIIC 166
Query: 529 IAHRLHTIMDS--DKVLVMDSG 548
H+ + + DK+L++ G
Sbjct: 167 SIHQPSSEIFELFDKLLLLSQG 188
>gnl|CDD|130344 TIGR01277, thiQ, thiamine ABC transporter, ATP-binding protein.
This model describes the energy-transducing ATPase
subunit ThiQ of the ThiBPQ thiamine (and thiamine
pyrophosphate) ABC transporter in several
Proteobacteria. This protein is found so far only in
Proteobacteria, and is found in complete genomes only if
the ThiB and ThiP subunits are also found [Transport and
binding proteins, Other].
Length = 213
Score = 67.6 bits (165), Expect = 8e-13
Identities = 56/201 (27%), Positives = 99/201 (49%), Gaps = 15/201 (7%)
Query: 361 NITIHPKEKIGIVGRTGAGKSSLIAAIFRLAE-VEGVIKIDDIDTEDVPLSKLRSNISII 419
++ + E + I+G +GAGKS+L+ I E G IK++D + + +S++
Sbjct: 18 DLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVNDQSHTGLAPY--QRPVSML 75
Query: 420 PQDPVLFSG-TLRKNLDPFEKYPDYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVG 478
Q+ LF+ T+R+N+ +P L A Q+ ++ D + G+ + S G
Sbjct: 76 FQENNLFAHLTVRQNIG-LGLHPGLKL-NAEQQEKVVD-AAQQVGIADYLDRLPEQLSGG 132
Query: 479 QRQLICLARAIVRNNVILVLDEATANVDPKTDL----LIQRTIRKKFADCTVLTIAHRLH 534
QRQ + LAR +VR N IL+LDE + +DP L+++ ++ T+L + H L
Sbjct: 133 QRQRVALARCLVRPNPILLLDEPFSALDPLLREEMLALVKQLCSER--QRTLLMVTHHLS 190
Query: 535 TIMDS-DKVLVMDSG-VAVVS 553
++ V+ G + VVS
Sbjct: 191 DARAIASQIAVVSQGKIKVVS 211
>gnl|CDD|172732 PRK14244, PRK14244, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 251
Score = 67.5 bits (165), Expect = 1e-12
Identities = 58/230 (25%), Positives = 108/230 (46%), Gaps = 33/230 (14%)
Query: 344 QNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRL------AEVEGVI 397
+N N+ Y +++ ++N+ I+ +E +G +G GKS+ + R+ +V+G +
Sbjct: 9 KNLNLWY-GSKQILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGEL 67
Query: 398 KIDDID--TEDVPLSKLRSNISIIPQDPVLFSGTLRKN---------LDPFEKYPDYVLW 446
ID ID + D + LR+ + ++ Q P F ++ N L +K D ++
Sbjct: 68 DIDGIDVYSVDTNVVLLRAKVGMVFQKPNPFPKSIYDNVAYGPKLHGLAKNKKKLDEIVE 127
Query: 447 TALQEV----ELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEAT 502
+L V EL D + + A S GQ+Q +C+ARAI +L++DE
Sbjct: 128 KSLTSVGLWEELGDRLKDSA----------FELSGGQQQRLCIARAIAVKPTMLLMDEPC 177
Query: 503 ANVDPKTDLLIQRTIRKKFADCTVLTIAHRLHTIMD-SDKVLVMDSGVAV 551
+ +DP +I+ I++ + T++ + H + SD+V SG V
Sbjct: 178 SALDPVATNVIENLIQELKKNFTIIVVTHSMKQAKKVSDRVAFFQSGRIV 227
>gnl|CDD|237917 PRK15134, PRK15134, microcin C ABC transporter ATP-binding protein
YejF; Provisional.
Length = 529
Score = 69.7 bits (171), Expect = 2e-12
Identities = 53/168 (31%), Positives = 85/168 (50%), Gaps = 28/168 (16%)
Query: 356 VIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAEVEGVIKIDDIDTEDVPLSKL--- 412
V+KN++ T+ P E +G+VG +G+GKS+ A+ RL +G I D PL L
Sbjct: 301 VVKNISFTLRPGETLGLVGESGSGKSTTGLALLRLINSQGEIWFD-----GQPLHNLNRR 355
Query: 413 -----RSNISIIPQDPVLFSGTLRKNLDPFE--------KYPDYVLWTALQEVELKDMIM 459
R I ++ QDP + +L L+ + P L A +E ++ +M
Sbjct: 356 QLLPVRHRIQVVFQDP---NSSLNPRLNVLQIIEEGLRVHQPT--LSAAQREQQVIA-VM 409
Query: 460 EGAGLN-MTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATANVD 506
E GL+ T + FS GQRQ I +ARA++ +++LDE T+++D
Sbjct: 410 EEVGLDPETRHRYPAEFSGGQRQRIAIARALILKPSLIILDEPTSSLD 457
Score = 34.7 bits (80), Expect = 0.16
Identities = 54/223 (24%), Positives = 102/223 (45%), Gaps = 35/223 (15%)
Query: 355 RVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAEVEGVIKID-DI--------DTE 405
V+ ++++ I E + +VG +G+GKS +I RL V+ DI
Sbjct: 23 TVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLLPSPPVVYPSGDIRFHGESLLHAS 82
Query: 406 DVPLSKLRSN-ISIIPQDPVLFSGTLRKNLDPF---EKYPDYVLWTAL-----QEVELKD 456
+ L +R N I++I Q+P++ +L+P EK VL +L +E +
Sbjct: 83 EQTLRGVRGNKIAMIFQEPMV-------SLNPLHTLEKQLYEVL--SLHRGMRREAARGE 133
Query: 457 MI--MEGAGLNMT---VYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATANVDPKTDL 511
++ ++ G+ + + S G+RQ + +A A++ +L+ DE T +D
Sbjct: 134 ILNCLDRVGIRQAAKRLTDYPHQLSGGERQRVMIAMALLTRPELLIADEPTTALDVSVQA 193
Query: 512 LIQRTIR--KKFADCTVLTIAHRLHTIMD-SDKVLVMDSGVAV 551
I + +R ++ + +L I H L + +D+V VM +G V
Sbjct: 194 QILQLLRELQQELNMGLLFITHNLSIVRKLADRVAVMQNGRCV 236
>gnl|CDD|226361 COG3842, PotA, ABC-type spermidine/putrescine transport systems,
ATPase components [Amino acid transport and metabolism].
Length = 352
Score = 68.5 bits (168), Expect = 2e-12
Identities = 52/230 (22%), Positives = 100/230 (43%), Gaps = 38/230 (16%)
Query: 341 IEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSL---IAAIFRLAEVEGVI 397
+E +N + + + ++++ I E + ++G +G GK++L IA + + G I
Sbjct: 6 LEIRNVSKSF-GDFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSS--GEI 62
Query: 398 KIDDIDTEDVPLSKLRSNISIIPQDPVLFSG-TLRKNLDPFEKYPDYVLWTALQEVELKD 456
+D D DVP K R I ++ Q LF T+ +N+ + V + E+K
Sbjct: 63 LLDGEDITDVPPEK-R-PIGMVFQSYALFPHMTVEENV----AFGLKVRKKLKKA-EIKA 115
Query: 457 MIMEG-AGLNMTVYEG--GTNFSVGQRQLICLARAIVRNNVILVLDEATANVDPKTDLLI 513
+ E + + + S GQ+Q + LARA+V +L+LDE + +D K +
Sbjct: 116 RVEEALELVGLEGFADRKPHQLSGGQQQRVALARALVPEPKVLLLDEPLSALDAKLREQM 175
Query: 514 QRTIRKKFADCTVLTIAHRLH--TIM---D-------SDKVLVMDSGVAV 551
++ +++ + L + D SD++ VM+ G
Sbjct: 176 RKELKE---------LQRELGITFVYVTHDQEEALAMSDRIAVMNDGRIE 216
>gnl|CDD|185336 PRK15439, PRK15439, autoinducer 2 ABC transporter ATP-binding
protein LsrA; Provisional.
Length = 510
Score = 69.3 bits (170), Expect = 2e-12
Identities = 61/220 (27%), Positives = 110/220 (50%), Gaps = 38/220 (17%)
Query: 352 SGPRVIKNLNITIHPKEKIGIVGRTGAGKSSL---IAAIFRLAEVEGVIKIDDIDTEDVP 408
SG V+K ++ T+H E ++G GAGKS+L IA I + G ++I P
Sbjct: 22 SGVEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGI--VPPDSGTLEIGG-----NP 74
Query: 409 LSKLRSN------ISIIPQDPVLFSG-TLRKNLDPFEKYPDYVLW----TALQEVELKDM 457
++L I ++PQ+P+LF ++++N +L+ ++K +
Sbjct: 75 CARLTPAKAHQLGIYLVPQEPLLFPNLSVKEN----------ILFGLPKRQASMQKMKQL 124
Query: 458 IME-GAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATANVDP-KTDLLIQR 515
+ G L++ G V RQ++ + R ++R++ IL+LDE TA++ P +T+ L R
Sbjct: 125 LAALGCQLDLDSSAGSLE--VADRQIVEILRGLMRDSRILILDEPTASLTPAETERLFSR 182
Query: 516 TIRKKFA-DCTVLTIAHRLHTIMD-SDKVLVMDSGVAVVS 553
IR+ A ++ I+H+L I +D++ VM G +S
Sbjct: 183 -IRELLAQGVGIVFISHKLPEIRQLADRISVMRDGTIALS 221
Score = 35.4 bits (82), Expect = 0.085
Identities = 49/216 (22%), Positives = 89/216 (41%), Gaps = 22/216 (10%)
Query: 348 VRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRL-AEVEGVIKIDDID-TE 405
V L+G +N+++ + E +G+ G GAG++ L ++ L G I ++ +
Sbjct: 271 VEDLTG-EGFRNISLEVRAGEILGLAGVVGAGRTELAETLYGLRPARGGRIMLNGKEINA 329
Query: 406 DVPLSKLRSNISIIPQD----------PVLFS-GTLRKNLDPFEKYPDYVLWTALQEVEL 454
+L + +P+D P+ ++ L N F P A+ E
Sbjct: 330 LSTAQRLARGLVYLPEDRQSSGLYLDAPLAWNVCALTHNRRGFWIKPARE--NAVLERYR 387
Query: 455 KDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATANVDPKTDLLIQ 514
+ + ++ S G +Q + +A+ + + +L++DE T VD I
Sbjct: 388 RALNIKFNHAEQAA----RTLSGGNQQKVLIAKCLEASPQLLIVDEPTRGVDVSARNDIY 443
Query: 515 RTIRKKFADCT-VLTIAHRLHTIMD-SDKVLVMDSG 548
+ IR A VL I+ L I +D+VLVM G
Sbjct: 444 QLIRSIAAQNVAVLFISSDLEEIEQMADRVLVMHQG 479
>gnl|CDD|172740 PRK14252, PRK14252, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 265
Score = 67.3 bits (164), Expect = 2e-12
Identities = 67/279 (24%), Positives = 120/279 (43%), Gaps = 51/279 (18%)
Query: 332 NEIWPVLGKIEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA 391
++ P K E N Y G + +KN+N+ +H K+ ++G +G GKS+ + R+
Sbjct: 8 GDVSPTQQKSEVNKLNF-YYGGYQALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMH 66
Query: 392 EV------EGVIKI----DDIDTEDVPLSKLRSNISIIPQDPVLFSGTLRKN-------- 433
++ EG I + +I + +V ++R IS++ Q P F ++ +N
Sbjct: 67 DLYPGNHYEGEIILHPDNVNILSPEVDPIEVRMRISMVFQKPNPFPKSIFENVAYGLRIR 126
Query: 434 -------LDPFEKYPDYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLA 486
L+ E+ + + AL + E+KD + + A N S GQ+Q +C+A
Sbjct: 127 GVKRRSILE--ERVENALRNAALWD-EVKDRLGDLA----------FNLSGGQQQRLCIA 173
Query: 487 RAIVRNNVILVLDEATANVDPKTDLLIQRTIRKKFADCTVLTIAHRLHTIMDSDKVLVMD 546
RA+ + IL+ DE T+ +DP I+ I T+L + H M
Sbjct: 174 RALATDPEILLFDEPTSALDPIATASIEELISDLKNKVTILIVTHN------------MQ 221
Query: 547 SGVAVVSSFGFFFSKDLIEGTVSAKVLSSRKRREKEDRI 585
V + + +LIE + + K ++ ED I
Sbjct: 222 QAARVSDYTAYMYMGELIEFGATDTIFIKPKNKQTEDYI 260
>gnl|CDD|172762 PRK14274, PRK14274, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 259
Score = 66.9 bits (163), Expect = 3e-12
Identities = 58/245 (23%), Positives = 110/245 (44%), Gaps = 34/245 (13%)
Query: 357 IKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAEVEGVIKI--------DDIDTEDVP 408
+KN+N++I E I+G +G GKS+ I + + ++ +K+ +I V
Sbjct: 28 LKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGKVD 87
Query: 409 LSKLRSNISIIPQDPVLFSGTLRKNL--------DPFEKYPDYVLWTALQEVELKDMIME 460
L +LR NI ++ Q F ++ N+ +K ++ +L++V L D + +
Sbjct: 88 LVELRKNIGMVFQKGNPFPQSIFDNVAYGPRIHGTKNKKKLQEIVEKSLKDVALWDEVKD 147
Query: 461 GAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATANVDPKTDLLIQRTIRKK 520
++ + S GQ+Q +C+ARA+ N +L++DE T+ +DP + I+ I K
Sbjct: 148 ------RLHTQALSLSGGQQQRLCIARALATNPDVLLMDEPTSALDPVSTRKIEELILKL 201
Query: 521 FADCTVLTIAHRLHTIMDSDKVLVMDSGVAVVSSFGFFFSKDLIEGTVSAKVLSSRKRRE 580
T++ + H M V FF+ +L+E + K+ S+ +
Sbjct: 202 KEKYTIVIVTHN------------MQQAARVSDQTAFFYMGELVECNDTNKMFSNPDDQR 249
Query: 581 KEDRI 585
D I
Sbjct: 250 TLDYI 254
>gnl|CDD|234199 TIGR03410, urea_trans_UrtE, urea ABC transporter, ATP-binding
protein UrtE. Members of this protein family are ABC
transporter ATP-binding subunits associated with urea
transport and metabolism. This protein is found in a
conserved five-gene transport operon typically found
adjacent to urease genes. It was shown in Cyanobacteria
that disruption leads to the loss of high-affinity urea
transport activity [Transport and binding proteins,
Amino acids, peptides and amines].
Length = 230
Score = 66.4 bits (163), Expect = 3e-12
Identities = 63/227 (27%), Positives = 105/227 (46%), Gaps = 29/227 (12%)
Query: 342 EFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLI-AAIFRLAEVEGVIKID 400
E N NV Y +++ +++ + E ++GR G GK++L+ + L G I++D
Sbjct: 2 EVSNLNVYY-GQSHILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLD 60
Query: 401 DID-TEDVPLSKLRSNISIIPQDPVLFSG-TLRKNL--------DPFEKYPDYVLWTALQ 450
D T+ P + R+ I+ +PQ +F T+ +NL K PD + L
Sbjct: 61 GEDITKLPPHERARAGIAYVPQGREIFPRLTVEENLLTGLAALPRRSRKIPDEIY--ELF 118
Query: 451 EVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATANVDPKTD 510
V LK+M+ G + S GQ+Q + +ARA+V +L+LDE T + P
Sbjct: 119 PV-LKEMLGRRGG----------DLSGGQQQQLAIARALVTRPKLLLLDEPTEGIQPSII 167
Query: 511 LLIQRTIRK--KFADCTVLTIAHRLHTIMD-SDKVLVMDSGVAVVSS 554
I R IR+ +L + L + +D+ VM+ G VV+S
Sbjct: 168 KDIGRVIRRLRAEGGMAILLVEQYLDFARELADRYYVMERG-RVVAS 213
>gnl|CDD|213266 cd03299, ABC_ModC_like, ATP-binding cassette domain similar to the
molybdate transporter. Archaeal protein closely related
to ModC. ModC is an ABC-type transporter and the ATPase
component of a molybdate transport system that also
includes the periplasmic binding protein ModA and the
membrane protein ModB. ABC transporters are a large
family of proteins involved in the transport of a wide
variety of different compounds, like sugars, ions,
peptides, and more complex organic molecules. The
nucleotide binding domain shows the highest similarity
between all members of the family. ABC transporters are
a subset of nucleotide hydrolases that contain a
signature motif, Q-loop, and H-loop/switch region, in
addition to, the Walker A motif/P-loop and Walker B
motif commonly found in a number of ATP- and GTP-binding
and hydrolyzing proteins.
Length = 235
Score = 66.2 bits (162), Expect = 3e-12
Identities = 61/207 (29%), Positives = 104/207 (50%), Gaps = 28/207 (13%)
Query: 356 VIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAEVEGVIKIDD----IDTEDV-PLS 410
+KN+++ + + I+G TG+GKS L+ I G IK D ++ +D+ L
Sbjct: 14 KLKNVSLEVERGDYFVILGPTGSGKSVLLETIA------GFIKPDSGKILLNGKDITNLP 67
Query: 411 KLRSNISIIPQDPVLFSG-TLRKNLDPFEKYPDYVLWTALQE-VELKDMIMEGAG-LNMT 467
+ +IS +PQ+ LF T+ KN+ Y L + E++ ++E A L +
Sbjct: 68 PEKRDISYVPQNYALFPHMTVYKNIA-------YGLKKRKVDKKEIERKVLEIAEMLGID 120
Query: 468 --VYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATANVDPKT-DLLIQ--RTIRKKFA 522
+ S G++Q + +ARA+V N IL+LDE + +D +T + L + + IRK+F
Sbjct: 121 HLLNRKPETLSGGEQQRVAIARALVVNPKILLLDEPFSALDVRTKEKLREELKKIRKEF- 179
Query: 523 DCTVLTIAHRLHTI-MDSDKVLVMDSG 548
TVL + H +DKV +M +G
Sbjct: 180 GVTVLHVTHDFEEAWALADKVAIMLNG 206
>gnl|CDD|224026 COG1101, PhnK, ABC-type uncharacterized transport system, ATPase
component [General function prediction only].
Length = 263
Score = 65.8 bits (161), Expect = 6e-12
Identities = 60/211 (28%), Positives = 101/211 (47%), Gaps = 22/211 (10%)
Query: 355 RVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIF-RLAEVEGVIKIDDIDTEDVPLSKLR 413
R + L++ I + + ++G GAGKS+L+ AI L G I ID +D ++K
Sbjct: 20 RALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKPTSGQILIDGVDVTKKSVAKRA 79
Query: 414 SNISIIPQDPVLFSG---TLRKNLDPFE-KYPDYVLWTALQEVELKDMIMEGAGLNMTVY 469
+ ++ + QDP+ + T+ +NL E + L +AL E A L
Sbjct: 80 NLLARVFQDPLAGTAPELTIEENLALAESRGKKRGLSSALNERRRSSFRERLARLG---- 135
Query: 470 EGGTN--------FSVGQRQLICLARAIVRNNVILVLDEATANVDPKT-DLLIQRT--IR 518
G N S GQRQ + L A + IL+LDE TA +DPKT + +++ T I
Sbjct: 136 LGLENRLSDRIGLLSGGQRQALSLLMATLHPPKILLLDEHTAALDPKTAEFVMELTAKIV 195
Query: 519 KKFADCTVLTIAHRLHTIMD-SDKVLVMDSG 548
++ T L + H + +D ++++++ SG
Sbjct: 196 EEH-KLTTLMVTHNMEDALDYGNRLIMLHSG 225
>gnl|CDD|172743 PRK14255, PRK14255, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 252
Score = 65.8 bits (160), Expect = 7e-12
Identities = 54/252 (21%), Positives = 111/252 (44%), Gaps = 48/252 (19%)
Query: 357 IKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRL------AEVEG--VIKIDDIDTEDVP 408
+K +++ + E ++G +G GKS+ + + R+ + G ++ +I +
Sbjct: 21 LKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYAPNED 80
Query: 409 LSKLRSNISIIPQDPVLFSGTLRKNLDPFEKYPDYVLWTALQEVELKDMIMEGAGLNMT- 467
+ +LR + ++ Q P F PF Y + + L V+ K ++ E ++
Sbjct: 81 VVQLRKQVGMVFQQPNPF---------PFSIYENVIYGLRLAGVKDKAVLDEAVETSLKQ 131
Query: 468 ----------VYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATANVDPKTDLLIQR-- 515
++E + S GQ+Q +C+AR + +++LDE T+ +DP + I+
Sbjct: 132 AAIWDEVKDHLHESALSLSGGQQQRVCIARVLAVKPDVILLDEPTSALDPISSTQIENML 191
Query: 516 -TIRKKFADCTVLTIAHRLHTIMD-SDKVLVMDSGVAVVSSFGFFFSKDLIEGTVSAKVL 573
+R ++ T++ + H +H SDK FF + +LIE + ++
Sbjct: 192 LELRDQY---TIILVTHSMHQASRISDKT-------------AFFLTGNLIEFADTKQMF 235
Query: 574 SSRKRREKEDRI 585
+ K +E ED I
Sbjct: 236 LNPKEKETEDYI 247
>gnl|CDD|224041 COG1116, TauB, ABC-type nitrate/sulfonate/bicarbonate transport
system, ATPase component [Inorganic ion transport and
metabolism].
Length = 248
Score = 64.9 bits (159), Expect = 1e-11
Identities = 52/236 (22%), Positives = 97/236 (41%), Gaps = 50/236 (21%)
Query: 340 KIEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAEV-EGVIK 398
+E + + + G V++++N+++ E + I+G +G GKS+L+ I L + G +
Sbjct: 3 LLEIEGVSKSF-GGVEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEVL 61
Query: 399 IDDIDTEDVPLSKLRSNISIIPQDPVLFSGTLRKNLDPFEKYPDYVLW-TALQEVE--LK 455
+D P++ +I + Q+ L P W T L V L+
Sbjct: 62 LDGR-----PVTGPGPDIGYVFQEDALL---------P---------WLTVLDNVALGLE 98
Query: 456 DMIMEGAGLNMTVYE-----GGTNF--------SVGQRQLICLARAIVRNNVILVLDEAT 502
A E G F S G RQ + +ARA+ +L+LDE
Sbjct: 99 LRGKSKAEARERAKELLELVGLAGFEDKYPHQLSGGMRQRVAIARALATRPKLLLLDEPF 158
Query: 503 ANVDPKT-----DLLIQRTIRKKFADCTVLTIAHRLH-TIMDSDKVLVMDSGVAVV 552
+D T D L++ + ++ TVL + H + + +D+V+V+ + +
Sbjct: 159 GALDALTREELQDELLR--LWEET-RKTVLLVTHDVDEAVYLADRVVVLSNRPGRI 211
>gnl|CDD|213268 cd03301, ABC_MalK_N, The N-terminal ATPase domain of the maltose
transporter, MalK. ATP binding cassette (ABC) proteins
function from bacteria to human, mediating the
translocation of substances into and out of cells or
organelles. ABC transporters contain two
transmembrane-spanning domains (TMDs) or subunits and
two nucleotide binding domains (NBDs) or subunits that
couple transport to the hydrolysis of ATP. In the
maltose transport system, the periplasmic maltose
binding protein (MBP) stimulates the ATPase activity of
the membrane-associated transporter, which consists of
two transmembrane subunits, MalF and MalG, and two
copies of the ATP binding subunit, MalK, and becomes
tightly bound to the transporter in the catalytic
transition state, ensuring that maltose is passed to the
transporter as ATP is hydrolyzed.
Length = 213
Score = 64.2 bits (157), Expect = 1e-11
Identities = 58/227 (25%), Positives = 100/227 (44%), Gaps = 37/227 (16%)
Query: 341 IEFQNTNVRYLSGPR-VIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAEV-EGVIK 398
+E +N R+ G + +LN+ I E + ++G +G GK++ + I L E G I
Sbjct: 1 VELENVTKRF--GNVTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIY 58
Query: 399 IDDIDTEDVPLSKLRSNISIIPQDPVL-----------FSGTLRKNLDPFEKYPDYVLWT 447
I D D+P +I+++ Q+ L F LRK P ++ + V
Sbjct: 59 IGGRDVTDLPPKD--RDIAMVFQNYALYPHMTVYDNIAFGLKLRKV--PKDEIDERVREV 114
Query: 448 A--LQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATANV 505
A LQ L L+ S GQRQ + L RAIVR + ++DE +N+
Sbjct: 115 AELLQIEHL---------LDRKP----KQLSGGQRQRVALGRAIVREPKVFLMDEPLSNL 161
Query: 506 DPKTDLLIQRTIRK--KFADCTVLTIAHRLHTIMD-SDKVLVMDSGV 549
D K + ++ +++ + T + + H M +D++ VM+ G
Sbjct: 162 DAKLRVQMRAELKRLQQRLGTTTIYVTHDQVEAMTMADRIAVMNDGQ 208
>gnl|CDD|172760 PRK14272, PRK14272, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 252
Score = 64.6 bits (157), Expect = 1e-11
Identities = 62/261 (23%), Positives = 111/261 (42%), Gaps = 46/261 (17%)
Query: 344 QNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRL------AEVEGVI 397
Q+ N+ Y + +KN+N+ + ++G +G GK++ + AI R+ A V G I
Sbjct: 8 QDVNI-YYGDKQAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRI 66
Query: 398 KID--DIDTEDVPLSKLRSNISIIPQDPVLFSGTLRKNLDPFEK---YPDYVLWTALQEV 452
+D DI V +R + ++ Q P +PF + + V L +
Sbjct: 67 LLDGQDIYGPRVDPVAMRRRVGMVFQKP-----------NPFPTMSVFDNVVAGLKLAGI 115
Query: 453 ELKDMIME-------GAGLNMTVYE----GGTNFSVGQRQLICLARAIVRNNVILVLDEA 501
+D +ME GA L V + T S GQ+Q +C+ARA+ IL++DE
Sbjct: 116 RDRDHLMEVAERSLRGAALWDEVKDRLKTPATGLSGGQQQRLCIARALAVEPEILLMDEP 175
Query: 502 TANVDPKTDLLIQRTIRKKFADCTVLTIAHRLHTIMDSDKVLVMDSGVAVVSSFGFFFSK 561
T+ +DP + I+ + T++ + H +H V + FF
Sbjct: 176 TSALDPASTARIEDLMTDLKKVTTIIIVTHNMH------------QAARVSDTTSFFLVG 223
Query: 562 DLIEGTVSAKVLSSRKRREKE 582
DL+E + ++ ++ + E
Sbjct: 224 DLVEHGPTDQLFTNPRDERTE 244
>gnl|CDD|237649 PRK14254, PRK14254, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 285
Score = 65.2 bits (159), Expect = 1e-11
Identities = 55/227 (24%), Positives = 104/227 (45%), Gaps = 22/227 (9%)
Query: 341 IEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRL------AEVE 394
IE ++ NV Y + + ++++ I + ++G +G GKS+ + I R+ A VE
Sbjct: 40 IEARDLNVFY-GDEQALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVE 98
Query: 395 GVIKID--DIDTEDVPLSKLRSNISIIPQDPVLFSGTLRKN------LDPFEKYPDYVLW 446
G + ++ DV LR I ++ Q P F ++ N + ++ D +
Sbjct: 99 GELTFRGKNVYDADVDPVALRRRIGMVFQKPNPFPKSIYDNVAYGLKIQGYDGDIDERVE 158
Query: 447 TALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATANVD 506
+L+ L D + + G + S GQ+Q +C+ARAI + ++++DE + +D
Sbjct: 159 ESLRRAALWDEV------KDQLDSSGLDLSGGQQQRLCIARAIAPDPEVILMDEPASALD 212
Query: 507 PKTDLLIQRTIRKKFADCTVLTIAHRLHTIMD-SDKVLVMDSGVAVV 552
P I+ I + + TV+ + H + SDK V +G +V
Sbjct: 213 PVATSKIEDLIEELAEEYTVVIVTHNMQQAARISDKTAVFLTGGELV 259
>gnl|CDD|172735 PRK14247, PRK14247, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 250
Score = 64.2 bits (156), Expect = 2e-11
Identities = 55/213 (25%), Positives = 97/213 (45%), Gaps = 33/213 (15%)
Query: 340 KIEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAE------V 393
KIE ++ V + V+ +N+ I ++G +G+GKS+L+ RL E V
Sbjct: 3 KIEIRDLKVSF-GQVEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARV 61
Query: 394 EGVIKIDDIDTEDVPLSKLRSNISIIPQDP-----------VLFSGTLRKNLDPFEKYPD 442
G + +D D + + +LR + ++ Q P V L + + ++ +
Sbjct: 62 SGEVYLDGQDIFKMDVIELRRRVQMVFQIPNPIPNLSIFENVALGLKLNRLVKSKKELQE 121
Query: 443 YVLWTALQEVEL----KDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVL 498
V W AL++ +L KD + AG S GQ+Q +C+ARA+ +L+
Sbjct: 122 RVRW-ALEKAQLWDEVKDRLDAPAG----------KLSGGQQQRLCIARALAFQPEVLLA 170
Query: 499 DEATANVDPKTDLLIQRTIRKKFADCTVLTIAH 531
DE TAN+DP+ I+ + D T++ + H
Sbjct: 171 DEPTANLDPENTAKIESLFLELKKDMTIVLVTH 203
>gnl|CDD|131367 TIGR02314, ABC_MetN, D-methionine ABC transporter, ATP-binding
protein. Members of this family are the ATP-binding
protein of the D-methionine ABC transporter complex.
Known members belong to the Proteobacteria.
Length = 343
Score = 65.3 bits (159), Expect = 2e-11
Identities = 66/222 (29%), Positives = 110/222 (49%), Gaps = 20/222 (9%)
Query: 341 IEFQNTNVRYLSGPRVIKNL-NITIH-PKEKI-GIVGRTGAGKSSLIAAIFRLAE-VEGV 396
I+ N + G + I+ L N+++H P +I G++G +GAGKS+LI + L G
Sbjct: 2 IKLSNITKVFHQGTKTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGS 61
Query: 397 IKIDDIDT---EDVPLSKLRSNISIIPQD-PVLFSGTLRKNLD-PFEKYPDYVLWTALQE 451
+ +D D + L+K R I +I Q +L S T+ N+ P E + T E
Sbjct: 62 VIVDGQDLTTLSNSELTKARRQIGMIFQHFNLLSSRTVFGNVALPLE-----LDNTPKDE 116
Query: 452 VELK-DMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATANVDPKTD 510
++ K ++ GL +N S GQ+Q + +ARA+ N +L+ DEAT+ +DP T
Sbjct: 117 IKRKVTELLALVGLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATT 176
Query: 511 ---LLIQRTIRKKFADCTVLTIAHRLHTIMD-SDKVLVMDSG 548
L + + I ++ T+L I H + + D V V+ +G
Sbjct: 177 QSILELLKEINRRL-GLTILLITHEMDVVKRICDCVAVISNG 217
>gnl|CDD|132027 TIGR02982, heterocyst_DevA, ABC exporter ATP-binding subunit, DevA
family. Members of this protein family are found mostly
in the Cyanobacteria, but also in the Planctomycetes.
Cyanobacterial examples are involved in heterocyst
formation, by which some fraction of members of the
colony undergo a developmental change and become capable
of nitrogen fixation. The DevBCA proteins are thought
export of either heterocyst-specific glycolipids or an
enzyme essential for formation of the laminated layer
found in heterocysts.
Length = 220
Score = 63.5 bits (155), Expect = 2e-11
Identities = 63/220 (28%), Positives = 111/220 (50%), Gaps = 16/220 (7%)
Query: 341 IEFQNTNVRYLSGP---RVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAEV-EGV 396
I +N N Y G +V+ ++N+ I+P E + + G +G+GK++L+ I L V EG
Sbjct: 2 ISIRNLNHYYGHGSLRKQVLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSVQEGS 61
Query: 397 IKIDDIDTEDVP---LSKLRSNISIIPQDPVLF-SGTLRKNLD-PFEKYPDYVLWTALQE 451
+K+ + L +LR NI I Q L T R+N+ E P+ + +
Sbjct: 62 LKVLGQELYGASEKELVQLRRNIGYIFQAHNLLGFLTARQNVQMALELQPNL---SYQEA 118
Query: 452 VELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATANVDPKTDL 511
E ++E GL + N S GQ+Q + +ARA+V +++ DE TA +D K+
Sbjct: 119 RERARAMLEAVGLGDHLDYYPHNLSGGQKQRVAIARALVHRPKLVLADEPTAALDSKSGR 178
Query: 512 LIQRTIRK--KFADCTVLTIAHRLHTIMD-SDKVLVMDSG 548
+ ++K + CT+L + H + I+D +D+++ M+ G
Sbjct: 179 DVVELMQKLAREQGCTILIVTHD-NRILDVADRIVHMEDG 217
>gnl|CDD|237645 PRK14235, PRK14235, phosphate transporter ATP-binding protein;
Provisional.
Length = 267
Score = 64.0 bits (156), Expect = 3e-11
Identities = 59/261 (22%), Positives = 118/261 (45%), Gaps = 32/261 (12%)
Query: 340 KIEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRL------AEV 393
K+ ++ +V Y + + ++++ I K +G +G GKS+ + + R+ V
Sbjct: 19 KMRARDVSVFY-GEKQALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRV 77
Query: 394 EGVIKIDDIDTED--VPLSKLRSNISIIPQDPVLFSGTLRKNLDPFEKYPDYVLWTALQE 451
G I +D D D + + +LR+ + ++ Q P F ++ +N+ Y + A +
Sbjct: 78 TGKITLDGEDIYDPRLDVVELRARVGMVFQKPNPFPKSIYENV----AYGPRIHGLARSK 133
Query: 452 VELKDMI---MEGAGLNMTV----YEGGTNFSVGQRQLICLARAIVRNNVILVLDEATAN 504
EL +++ + AGL V +E GT S GQ+Q +C+ARAI + ++++DE +
Sbjct: 134 AELDEIVETSLRKAGLWEEVKDRLHEPGTGLSGGQQQRLCIARAIAVSPEVILMDEPCSA 193
Query: 505 VDPKTDLLIQRTIRKKFADCTVLTIAHRLHTIMDSDKVLVMDSGVAVVSSFGFFFSKDLI 564
+DP ++ I + + T++ + H M V FF +L+
Sbjct: 194 LDPIATAKVEELIDELRQNYTIVIVTHS------------MQQAARVSQRTAFFHLGNLV 241
Query: 565 EGTVSAKVLSSRKRREKEDRI 585
E + K+ ++ +D I
Sbjct: 242 EVGDTEKMFTNPDDPRTQDYI 262
>gnl|CDD|226927 COG4555, NatA, ABC-type Na+ transport system, ATPase component
[Energy production and conversion / Inorganic ion
transport and metabolism].
Length = 245
Score = 63.6 bits (155), Expect = 3e-11
Identities = 55/217 (25%), Positives = 101/217 (46%), Gaps = 8/217 (3%)
Query: 341 IEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAEV-EGVIKI 399
+E + Y S + +++++ E G++G GAGK++L+ I L G + I
Sbjct: 2 LEVTDLTKSYGSKVQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDSGKVTI 61
Query: 400 DDIDTEDVPLSKLRSNISIIP-QDPVLFSGTLRKNLDPFEKYPDYVLWTALQEVELKDMI 458
D +DT P S +R I ++ + + T R+NL F + L + + ++
Sbjct: 62 DGVDTVRDP-SFVRRKIGVLFGERGLYARLTARENLKYFARL--NGLSRKEIKARIAEL- 117
Query: 459 MEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATANVDPKTDLLIQRTIR 518
+ L + FS G +Q + +ARA+V + ILVLDE T+ +D +T I+
Sbjct: 118 SKRLQLLEYLDRRVGEFSTGMKQKVAIARALVHDPSILVLDEPTSGLDIRTRRKFHDFIK 177
Query: 519 K-KFADCTVLTIAHRLHTIMD-SDKVLVMDSGVAVVS 553
+ K V+ +H + + D+V+V+ G V+
Sbjct: 178 QLKNEGRAVIFSSHIMQEVEALCDRVIVLHKGEVVLE 214
>gnl|CDD|213186 cd03219, ABC_Mj1267_LivG_branched, ATP-binding cassette component
of branched chain amino acids transport system. The
Mj1267/LivG ABC transporter subfamily is involved in the
transport of the hydrophobic amino acids leucine,
isoleucine and valine. MJ1267 is a branched-chain amino
acid transporter with 29% similarity to both the LivF
and LivG components of the E. coli branched-chain amino
acid transporter. MJ1267 contains an insertion from
residues 114 to 123 characteristic of LivG
(Leucine-Isoleucine-Valine) homologs. The branched-chain
amino acid transporter from E. coli comprises a
heterodimer of ABCs (LivF and LivG), a heterodimer of
six-helix TM domains (LivM and LivH), and one of two
alternative soluble periplasmic substrate binding
proteins (LivK or LivJ).
Length = 236
Score = 62.8 bits (154), Expect = 4e-11
Identities = 48/215 (22%), Positives = 91/215 (42%), Gaps = 30/215 (13%)
Query: 355 RVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAEV-EGVIKIDDIDTEDVPLSKL- 412
+ +++ ++ P E G++G GAGK++L I G + D D +P ++
Sbjct: 14 VALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLPPHEIA 73
Query: 413 -----RSNISIIPQDPVLFSG-TLRKNLD----PFEKYPDYVLWTALQEVELKDMIME-- 460
R+ Q P LF T+ +N+ + +E E ++ E
Sbjct: 74 RLGIGRTF-----QIPRLFPELTVLENVMVAAQARTGSGLLLARARREEREARERAEELL 128
Query: 461 -----GAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATANVDPK-TDLLIQ 514
+ S GQ++ + +ARA+ + +L+LDE A ++P+ T+ L +
Sbjct: 129 ERVGLADLADRPA----GELSYGQQRRLEIARALATDPKLLLLDEPAAGLNPEETEELAE 184
Query: 515 RTIRKKFADCTVLTIAHRLHTIMD-SDKVLVMDSG 548
+ TVL + H + +M +D+V V+D G
Sbjct: 185 LIRELRERGITVLLVEHDMDVVMSLADRVTVLDQG 219
>gnl|CDD|226968 COG4615, PvdE, ABC-type siderophore export system, fused ATPase and
permease components [Secondary metabolites biosynthesis,
transport, and catabolism / Inorganic ion transport and
metabolism].
Length = 546
Score = 65.2 bits (159), Expect = 4e-11
Identities = 89/472 (18%), Positives = 171/472 (36%), Gaps = 51/472 (10%)
Query: 98 IHKKMFEAVVYSPLAFFSTNPSGRILNRFSKDMGAVDEVLPKAMLDAAQGVMQV--SGAL 155
+ + + ++ +PL S R+L + D+ + + + Q ++ S A
Sbjct: 83 LRSEFIKKILDTPLERIERLGSARLLAGLTSDVRNISFAF-SRLPELVQAIILTLGSAAY 141
Query: 156 IVSLSVNPLFSIPVLILLYLFWRLSKAYLRTSKSLKYLEGVTRS--PVFTHLNACLHGLP 213
+ LS +F + V+ ++ W ++ ++ K++ + + L G
Sbjct: 142 LAYLSP-KMFLLTVVWIVVTIW---GGFVLMARVYKHMAAARETEDKLQNDYQTILEGRK 197
Query: 214 TIRAHGAAKILVEEFDYHQDLHSSTWHLFVYTNMGFAYLIDFLCLLYLSTILISFFFFAD 273
+ + V Y D H+ + N +++ ++ L I + F+
Sbjct: 198 ELTLNRERAEYVHNNLYIPDAQEYRHHI-IRANTFHLLAVNWSNIMLLGLIGLVFWLALS 256
Query: 274 IG-GKVGLAVTQTMTLM----GVVQWA----MRQAAEVENHMISVKRLVEYTKLEPEGNL 324
+G +A T + L+ ++ A+V + I+ L Y
Sbjct: 257 LGWASTNVAATIVLVLLFLRTPLLSAVGILPTLLTAQVAFNKIAKLELAPY----KADFP 312
Query: 325 SPNYEDENEIWPVLGKIEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLI 384
P P +E +N Y + +N+TI E + ++G G+GKS+L
Sbjct: 313 RPQAF------PDWKTLELRNVRFAYQDNAFHVGPINLTIKRGELVFLIGGNGSGKSTLA 366
Query: 385 AAIFRL-AEVEGVIKIDDIDTEDVPLSKLRSNISIIPQDPVLFSGTLRKNLDPFEKYPDY 443
+ L G I +D L R S + D LF L + +
Sbjct: 367 MLLTGLYQPQSGEILLDGKPVSAEQLEDYRKLFSAVFSDYHLFDQLLGPEGKASPQLIEK 426
Query: 444 VLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATA 503
W E+ K + +G N S GQ++ + L A++ ILVLDE A
Sbjct: 427 --WLQRLELAHKTSLNDGRFSN-------LKLSTGQKKRLALLLALLEERDILVLDEWAA 477
Query: 504 NVDP-------KTDLLIQRTIRKKFADCTVLTIAHRLHTIMDSDKVLVMDSG 548
+ DP + L + + K T+ I+H H + +D++L M +G
Sbjct: 478 DQDPAFRREFYQVLLPLLKEQGK-----TIFAISHDDHYFIHADRLLEMRNG 524
>gnl|CDD|213188 cd03221, ABCF_EF-3, ATP-binding cassette domain of elongation
factor 3, subfamily F. Elongation factor 3 (EF-3) is a
cytosolic protein required by fungal ribosomes for in
vitro protein synthesis and for in vivo growth. EF-3
stimulates the binding of the EF-1: GTP: aa-tRNA ternary
complex to the ribosomal A site by facilitated release
of the deacylated tRNA from the E site. The reaction
requires ATP hydrolysis. EF-3 contains two ATP
nucleotide binding sequence (NBS) motifs. NBSI is
sufficient for the intrinsic ATPase activity. NBSII is
essential for the ribosome-stimulated functions.
Length = 144
Score = 60.5 bits (148), Expect = 4e-11
Identities = 40/192 (20%), Positives = 76/192 (39%), Gaps = 68/192 (35%)
Query: 341 IEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIF-RLAEVEGVIKI 399
IE +N + Y ++K++++TI+P ++IG+VGR GAGKS+L+ I L EG++
Sbjct: 1 IELENLSKTYGGKL-LLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIVTW 59
Query: 400 DDIDTEDVPLSKLRSNISIIPQDPVLFSGTLRKNLDPFEKYPDYVLWTALQEVELKDMIM 459
I Q SG
Sbjct: 60 GS-----------TVKIGYFEQ----LSG------------------------------- 73
Query: 460 EGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATANVDPKTDLLIQRTIRK 519
G++ + LA+ ++ N +L+LDE T ++D ++ ++ +++
Sbjct: 74 ------------------GEKMRLALAKLLLENPNLLLLDEPTNHLDLESIEALEEALKE 115
Query: 520 KFADCTVLTIAH 531
TV+ ++H
Sbjct: 116 Y--PGTVILVSH 125
>gnl|CDD|213233 cd03266, ABC_NatA_sodium_exporter, ATP-binding cassette domain of
the Na+ transporter. NatA is the ATPase component of a
bacterial ABC-type Na+ transport system called NatAB,
which catalyzes ATP-dependent electrogenic Na+ extrusion
without mechanically coupled proton or K+ uptake. NatB
possess six putative membrane spanning regions at its
C-terminus. In B. subtilis, NatAB is inducible by agents
such as ethanol and protonophores, which lower the
proton-motive force across the membrane. The closest
sequence similarity to NatA is exhibited by DrrA of the
two-component daunorubicin- and doxorubicin-efflux
system. Hence, the functional NatAB is presumably
assembled with two copies of a single ATP-binding
protein and a single integral membrane protein.
Length = 218
Score = 62.4 bits (152), Expect = 4e-11
Identities = 53/207 (25%), Positives = 91/207 (43%), Gaps = 22/207 (10%)
Query: 356 VIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAEVE-GVIKIDDIDTEDVPLSKLRS 414
+ ++ T+ P E G++G GAGK++ + + L E + G +D D P + R
Sbjct: 20 AVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFDVVKEPA-EARR 78
Query: 415 NISIIPQDPVLFSG-TLRKNLDPFEKYPDYVLWTALQEVELKDMIMEGAG-LNMTVY--E 470
+ + L+ T R+NL+ F L+ EL + E A L M
Sbjct: 79 RLGFVSDSTGLYDRLTARENLEYFAGL------YGLKGDELTARLEELADRLGMEELLDR 132
Query: 471 GGTNFSVGQRQLICLARAIVRNNVILVLDEATANVDPKTDLLIQRTIRK-----KFADCT 525
FS G RQ + +ARA+V + +L+LDE T + D++ R +R+ +
Sbjct: 133 RVGGFSTGMRQKVAIARALVHDPPVLLLDEPTTGL----DVMATRALREFIRQLRALGKC 188
Query: 526 VLTIAHRLHTIMD-SDKVLVMDSGVAV 551
+L H + + D+V+V+ G V
Sbjct: 189 ILFSTHIMQEVERLCDRVVVLHRGRVV 215
>gnl|CDD|224060 COG1137, YhbG, ABC-type (unclassified) transport system, ATPase
component [General function prediction only].
Length = 243
Score = 63.0 bits (154), Expect = 5e-11
Identities = 48/169 (28%), Positives = 87/169 (51%), Gaps = 8/169 (4%)
Query: 355 RVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAEV-EGVIKIDDIDTEDVPLSK-L 412
+V+ ++++ ++ E +G++G GAGK++ I L G I +DD D +P+ K
Sbjct: 18 KVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPDSGKILLDDEDITKLPMHKRA 77
Query: 413 RSNISIIPQDPVLFSG-TLRKNLDPFEKYPDYVLWTALQEVELKDMIMEGAGLNMTVYEG 471
R I +PQ+ +F T+ N+ + + L A ++ EL ++ E ++T
Sbjct: 78 RLGIGYLPQEASIFRKLTVEDNIMAVLEIREKDLKKAERKEELDALLEE---FHITHLRD 134
Query: 472 --GTNFSVGQRQLICLARAIVRNNVILVLDEATANVDPKTDLLIQRTIR 518
+ S G+R+ + +ARA+ N ++LDE A VDP + IQR I+
Sbjct: 135 SKAYSLSGGERRRVEIARALAANPKFILLDEPFAGVDPIAVIDIQRIIK 183
>gnl|CDD|224044 COG1119, ModF, ABC-type molybdenum transport system, ATPase
component/photorepair protein PhrA [Inorganic ion
transport and metabolism].
Length = 257
Score = 63.1 bits (154), Expect = 5e-11
Identities = 46/212 (21%), Positives = 88/212 (41%), Gaps = 31/212 (14%)
Query: 341 IEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAE---VEGVI 397
IE +N +VR +G +++ +L+ ++P E IVG GAGK++L++ + E G +
Sbjct: 32 IELKNVSVRR-NGKKILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLL--TGEHPPSSGDV 88
Query: 398 KI--DDIDTEDVPLSKLRSNISIIPQDPVLFSGTLRKNLDPFEKYPDYVL--WTA----- 448
+ + + +LR I ++ S L + E D VL + A
Sbjct: 89 TLLGRRFGKGET-IFELRKRIGLV-------SSELHERFRVRETVRDVVLSGFFASIGIY 140
Query: 449 ---LQEVELKDMIMEGAGLNMTVYEGGT--NFSVGQRQLICLARAIVRNNVILVLDEATA 503
L +L L + S G+++ + +ARA+V++ +L+LDE
Sbjct: 141 QEDLTAEDLAAAQWLLELLGAKHLADRPFGSLSQGEQRRVLIARALVKDPELLILDEPAQ 200
Query: 504 NVDPKTDLLIQRTIRKKFADC---TVLTIAHR 532
+D + + + A +L + H
Sbjct: 201 GLDLIAREQLLNRLEELAASPGAPALLFVTHH 232
>gnl|CDD|131816 TIGR02769, nickel_nikE, nickel import ATP-binding protein NikE.
This family represents the NikE subunit of a
multisubunit nickel import ABC transporter complex.
Nickel, once imported, may be used in urease and in
certain classes of hydrogenase and superoxide dismutase
[Transport and binding proteins, Cations and iron
carrying compounds].
Length = 265
Score = 63.3 bits (154), Expect = 5e-11
Identities = 58/213 (27%), Positives = 95/213 (44%), Gaps = 31/213 (14%)
Query: 356 VIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAE-VEGVIKIDDIDTEDVPLSKL-- 412
V+ N++++I E +G++GR+G GKS+L + L + +G + L +L
Sbjct: 26 VLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQGTVSF-----RGQDLYQLDR 80
Query: 413 ------RSNISIIPQD---PVLFSGTLRKNL-DPFEKYPDYVLWTALQEVELKDMI---M 459
R ++ ++ QD V T+R+ + +P T+L E E K I +
Sbjct: 81 KQRRAFRRDVQLVFQDSPSAVNPRMTVRQIIGEPLRHL------TSLDESEQKARIAELL 134
Query: 460 EGAGLNMTVYEG-GTNFSVGQRQLICLARAIVRNNVILVLDEATANVDPKTDLLIQRTIR 518
+ GL + S GQ Q I +ARA+ ++VLDEA +N+D +I +R
Sbjct: 135 DMVGLRSEDADKLPRQLSGGQLQRINIARALAVKPKLIVLDEAVSNLDMVLQAVILELLR 194
Query: 519 KKFAD--CTVLTIAHRLHTIMD-SDKVLVMDSG 548
K L I H L + +V VMD G
Sbjct: 195 KLQQAFGTAYLFITHDLRLVQSFCQRVAVMDKG 227
>gnl|CDD|184202 PRK13642, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 277
Score = 63.2 bits (153), Expect = 5e-11
Identities = 69/242 (28%), Positives = 114/242 (47%), Gaps = 27/242 (11%)
Query: 341 IEFQNTNVRYLSGPRV--IKNLNITIHPKEKIGIVGRTGAGKSS---LIAAIFRLAEVEG 395
+E +N +Y V + ++ +I E + I+G+ G+GKS+ LI +F E EG
Sbjct: 5 LEVENLVFKYEKESDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFE--EFEG 62
Query: 396 VIKIDDIDTEDVPLSKLRSNISIIPQDP-VLFSGTLRKNLDPFEKYPDYVLWTALQEVEL 454
+KID + LR I ++ Q+P F G ++ D Q +
Sbjct: 63 KVKIDGELLTAENVWNLRRKIGMVFQNPDNQFVGATVED--------DVAFGMENQGIPR 114
Query: 455 KDMI--MEGAGLNMTVYEGGT----NFSVGQRQLICLARAIVRNNVILVLDEATANVDPK 508
++MI ++ A L + + + T S GQ+Q + +A I I++LDE+T+ +DP
Sbjct: 115 EEMIKRVDEALLAVNMLDFKTREPARLSGGQKQRVAVAGIIALRPEIIILDESTSMLDPT 174
Query: 509 TDLLIQRTIR--KKFADCTVLTIAHRLHTIMDSDKVLVMDSGVAV---VSSFGFFFSKDL 563
I R I K+ TVL+I H L SD++LVM +G + S F S+D+
Sbjct: 175 GRQEIMRVIHEIKEKYQLTVLSITHDLDEAASSDRILVMKAGEIIKEAAPSELFATSEDM 234
Query: 564 IE 565
+E
Sbjct: 235 VE 236
>gnl|CDD|188353 TIGR03608, L_ocin_972_ABC, putative bacteriocin export ABC
transporter, lactococcin 972 group. A gene pair with a
fairly wide distribution consists of a polypeptide
related to the lactococcin 972 (see TIGR01653) and
multiple-membrane-spanning putative immunity protein
(see TIGR01654). This model represents a small clade
within the ABC transporters that regularly are found
adjacent to these bacteriocin system gene pairs and are
likely serve as export proteins [Cellular processes,
Toxin production and resistance, Transport and binding
proteins, Unknown substrate].
Length = 206
Score = 61.9 bits (151), Expect = 6e-11
Identities = 47/172 (27%), Positives = 89/172 (51%), Gaps = 20/172 (11%)
Query: 355 RVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAEVE-GVIKIDDIDTEDVPLSK-- 411
++ +LN+TI + I+G +G+GKS+L+ I L + + G + ++ +T + K
Sbjct: 12 VILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFDSGQVYLNGQETPPLNSKKAS 71
Query: 412 --LRSNISIIPQDPVLF-SGTLRKNLD-PFEKYPDYVLWTALQEVELKDMIMEGAGLNMT 467
R + + Q+ L + T+ +NLD + Y + ++ E K +E GLN+
Sbjct: 72 KFRREKLGYLFQNFALIENETVEENLDLGLK----YKKLSKKEKREKKKEALEKVGLNLK 127
Query: 468 ----VYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATANVDPKT-DLLIQ 514
+YE S G++Q + LARAI++ +++ DE T ++DPK D ++
Sbjct: 128 LKQKIYE----LSGGEQQRVALARAILKPPPLILADEPTGSLDPKNRDEVLD 175
>gnl|CDD|226364 COG3845, COG3845, ABC-type uncharacterized transport systems,
ATPase components [General function prediction only].
Length = 501
Score = 64.1 bits (157), Expect = 8e-11
Identities = 53/220 (24%), Positives = 100/220 (45%), Gaps = 20/220 (9%)
Query: 341 IEFQNTNVRYLSGPRVI--KNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAEV-EGVI 397
+E + R+ P V+ ++++++ E ++G GAGKS+L+ +F L + G I
Sbjct: 5 LEMRGITKRF---PGVVANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPDSGEI 61
Query: 398 KIDDIDTE-DVPLSKLRSNISIIPQDPVLFSGTLRKNLDPFEKY-----PDYVLWTALQE 451
++D + P +R I ++ Q +L L E P ++
Sbjct: 62 RVDGKEVRIKSPRDAIRLGIGMVHQHFMLV-----PTLTVAENIILGLEPSKGGLIDRRQ 116
Query: 452 VELK-DMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATANVDPK-T 509
+ + E GL + + SVG++Q + + +A+ R +L+LDE TA + P+
Sbjct: 117 ARARIKELSERYGLPVDPDAKVADLSVGEQQRVEILKALYRGARLLILDEPTAVLTPQEA 176
Query: 510 DLLIQRTIRKKFADCTVLTIAHRLHTIMD-SDKVLVMDSG 548
D L + R T++ I H+L +M +D+V V+ G
Sbjct: 177 DELFEILRRLAAEGKTIIFITHKLKEVMAIADRVTVLRRG 216
Score = 49.9 bits (120), Expect = 3e-06
Identities = 56/235 (23%), Positives = 105/235 (44%), Gaps = 33/235 (14%)
Query: 336 PVLGKIEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAEVE- 394
VL E ++ +V+ G +K+++ + E +GI G G G+S L+ AI L +
Sbjct: 256 VVL---EVEDLSVKDRRGVTAVKDVSFEVRAGEIVGIAGVAGNGQSELVEAISGLRKPAS 312
Query: 395 GVIKID--DIDTEDVPLSKLRSNISIIPQDP-----VLFSGTLRKNL-------DPFEKY 440
G I ++ D+ P + R ++ +P+D VL +L +NL PF +
Sbjct: 313 GRILLNGKDVLGRLSPRERRRLGLAYVPEDRHGHGLVL-DLSLAENLVLGRHDKKPFSRG 371
Query: 441 PDYVLWTALQEVELKDMIMEGAGLNMTVYEGGT-----NFSVGQRQLICLARAIVRNNVI 495
++ A+++ +++I E V + S G +Q + LAR + R +
Sbjct: 372 G-FLDRRAIRKF-ARELIEE-----FDVRAPSPDAPARSLSGGNQQKLILARELARRPDL 424
Query: 496 LVLDEATANVDPKTDLLIQRTIRK-KFADCTVLTIAHRLHTIMD-SDKVLVMDSG 548
L+ + T +D I + + + A VL I+ L I++ SD++ V+ G
Sbjct: 425 LIAAQPTRGLDVGAIEFIHERLLELRDAGKAVLLISEDLDEILELSDRIAVIYEG 479
>gnl|CDD|172739 PRK14251, PRK14251, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 251
Score = 62.4 bits (151), Expect = 9e-11
Identities = 56/246 (22%), Positives = 107/246 (43%), Gaps = 40/246 (16%)
Query: 357 IKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAE------VEGVIKID--DIDTEDVP 408
+ +++ KE ++G +G GKS+ + + R+ + + G IK + +I +
Sbjct: 20 LHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYGSKMD 79
Query: 409 LSKLRSNISIIPQDPVLFSGTLRKNLDPFEKYPD--YVLWTA-LQEVELKDMIMEGAGLN 465
L +LR + ++ Q P F PF Y + Y L A +++ EL D +E +
Sbjct: 80 LVELRKEVGMVFQQPTPF---------PFSVYDNVAYGLKIAGVKDKELIDQRVEESLKQ 130
Query: 466 MTVYE--------GGTNFSVGQRQLICLARAIVRNNVILVLDEATANVDPKTDLLIQRTI 517
+++ FS GQ+Q IC+ARA+ +++LDE T+ +DP + I+ T+
Sbjct: 131 AAIWKETKDNLDRNAQAFSGGQQQRICIARALAVRPKVVLLDEPTSALDPISSSEIEETL 190
Query: 518 RKKFADCTVLTIAHRLHTIMDSDKVLVMDSGVAVVSSFGFFFSKDLIEGTVSAKVLSSRK 577
+ T + + H L + F + DLIE + ++ + K
Sbjct: 191 MELKHQYTFIMVTHNLQ------------QAGRISDQTAFLMNGDLIEAGPTEEMFIAPK 238
Query: 578 RREKED 583
++ D
Sbjct: 239 KQITSD 244
>gnl|CDD|224051 COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase
component [Amino acid transport and metabolism].
Length = 240
Score = 61.8 bits (151), Expect = 1e-10
Identities = 47/173 (27%), Positives = 87/173 (50%), Gaps = 12/173 (6%)
Query: 341 IEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAEVE-GVIKI 399
IE +N + + V+K +++++ E + I+G +G+GKS+L+ + L E + G I +
Sbjct: 3 IEIKNLSKSF-GDKEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITV 61
Query: 400 DDID-TEDVPLSKLRSNISIIPQDPVLFSG-TLRKNLDPFEKYPDYVLWTALQEVELKDM 457
D D + + KLR + ++ Q LF T+ +N+ P V + E K +
Sbjct: 62 DGEDVGDKKDILKLRRKVGMVFQQFNLFPHLTVLENV---TLAPVKVKKLSKAEAREKAL 118
Query: 458 -IMEGAGLN--MTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATANVDP 507
++E GL Y S GQ+Q + +ARA+ + +++ DE T+ +DP
Sbjct: 119 ELLEKVGLADKADAYPA--QLSGGQQQRVAIARALAMDPKVMLFDEPTSALDP 169
>gnl|CDD|213229 cd03262, ABC_HisP_GlnQ, ATP-binding cassette domain of the
histidine and glutamine transporters. HisP and GlnQ are
the ATP-binding components of the bacterial periplasmic
histidine and glutamine permeases, respectively.
Histidine permease is a multi-subunit complex containing
the HisQ and HisM integral membrane subunits and two
copies of HisP. HisP has properties intermediate between
those of integral and peripheral membrane proteins and
is accessible from both sides of the membrane,
presumably by its interaction with HisQ and HisM. The
two HisP subunits form a homodimer within the complex.
The domain structure of the amino acid uptake systems is
typical for prokaryotic extracellular solute binding
protein-dependent uptake systems. All of the amino acid
uptake systems also have at least one, and in a few
cases, two extracellular solute binding proteins located
in the periplasm of Gram-negative bacteria, or attached
to the cell membrane of Gram-positive bacteria. The
best-studied member of the PAAT (polar amino acid
transport) family is the HisJQMP system of S.
typhimurium, where HisJ is the extracellular solute
binding proteins and HisP is the ABC protein.
Length = 213
Score = 61.0 bits (149), Expect = 1e-10
Identities = 58/228 (25%), Positives = 104/228 (45%), Gaps = 35/228 (15%)
Query: 341 IEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAEV-EGVIKI 399
IE +N + + V+K +++T+ E + I+G +G+GKS+L+ I L E G I I
Sbjct: 1 IEIKNLHKSF-GDFHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTIII 59
Query: 400 DD--IDTEDVPLSKLRSNISIIPQDPVLFSGTLRKNLDPFEKY---PDYVLWTALQEVEL 454
D + + +++LR + ++ Q LF +L E P V + E E
Sbjct: 60 DGLKLTDDKKNINELRQKVGMVFQQFNLFP-----HLTVLENITLAPIKVKGMSKAEAEE 114
Query: 455 KDM-IMEGAGL--NMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATANVDPKT-- 509
+ + ++E GL Y S GQ+Q + +ARA+ N +++ DE T+ +DP+
Sbjct: 115 RALELLEKVGLADKADAYPA--QLSGGQQQRVAIARALAMNPKVMLFDEPTSALDPELVG 172
Query: 510 ---DLLIQRTIRKKFADCTVLTIAHRLHTIMD-----SDKVLVMDSGV 549
D++ T++ + H M +D+V+ MD G
Sbjct: 173 EVLDVMKDLAEEG----MTMVVVTHE----MGFAREVADRVIFMDDGR 212
>gnl|CDD|237646 PRK14237, PRK14237, phosphate transporter ATP-binding protein;
Provisional.
Length = 267
Score = 61.7 bits (150), Expect = 2e-10
Identities = 56/239 (23%), Positives = 116/239 (48%), Gaps = 39/239 (16%)
Query: 366 PKEKI-GIVGRTGAGKSSLIAAIFRL------AEVEGVIKIDDID--TEDVPLSKLRSNI 416
K KI ++G +G+GKS+ + ++ R+ A V G I ID +++ + ++R +I
Sbjct: 44 EKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDINRKEINVYEMRKHI 103
Query: 417 SIIPQDPVLFSGTLRKNLDPF---------EKYPDYVLWTALQEVELKDMIMEGAGLNMT 467
++ Q P F+ ++ +N+ F +K D ++ T+L++ L D + +
Sbjct: 104 GMVFQRPNPFAKSIYENI-TFALERAGVKDKKVLDEIVETSLKQAALWDQVKD------D 156
Query: 468 VYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATANVDPKTDLLIQRTIRKKFADCTVL 527
+++ S GQ+Q +C+ARAI IL++DE + +DP + + ++ T+ + + T++
Sbjct: 157 LHKSALTLSGGQQQRLCIARAIAVKPDILLMDEPASALDPISTMQLEETMFELKKNYTII 216
Query: 528 TIAHRLHTIMDSDKVLVMDSGVAVVSSF-GFFFSKDLIEGTVSAKVLSSRKRREKEDRI 585
+ H + A S + FF+ DLIE + + ++ K + D +
Sbjct: 217 IVTHNMQQ-------------AARASDYTAFFYLGDLIEYDKTRNIFTNPKLQSTNDYV 262
>gnl|CDD|182716 PRK10771, thiQ, thiamine transporter ATP-binding subunit;
Provisional.
Length = 232
Score = 61.1 bits (149), Expect = 2e-10
Identities = 50/154 (32%), Positives = 78/154 (50%), Gaps = 17/154 (11%)
Query: 361 NITIHPKEKIGIVGRTGAGKSSLIAAI--FRLAEVEGVIKIDDIDTEDVPLSKLRSNISI 418
++T+ E++ I+G +GAGKS+L+ I F L G + ++ D P S+ R +S+
Sbjct: 19 DLTVERGERVAILGPSGAGKSTLLNLIAGF-LTPASGSLTLNGQDHTTTPPSR-RP-VSM 75
Query: 419 IPQDPVLFSG-TLRKN----LDPFEKYPDYVLWTALQEVELKDMIMEGAGLNMTVYEGGT 473
+ Q+ LFS T+ +N L+P K A Q +L I G+ +
Sbjct: 76 LFQENNLFSHLTVAQNIGLGLNPGLKL------NAAQREKLHA-IARQMGIEDLLARLPG 128
Query: 474 NFSVGQRQLICLARAIVRNNVILVLDEATANVDP 507
S GQRQ + LAR +VR IL+LDE + +DP
Sbjct: 129 QLSGGQRQRVALARCLVREQPILLLDEPFSALDP 162
>gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated
ATPase domains [General function prediction only].
Length = 530
Score = 63.4 bits (155), Expect = 2e-10
Identities = 44/192 (22%), Positives = 79/192 (41%), Gaps = 36/192 (18%)
Query: 341 IEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAI-FRLAEVEGVIKI 399
I +N ++ Y +++N+++T++P E+IG+VGR GAGKS+L+ + L G +
Sbjct: 4 ITLENLSLAY-GDRPLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPDSGEVTR 62
Query: 400 ----------------------DDIDTEDVPLSKLRSNISIIPQDPVLFSGTLRKNLDPF 437
D + L +L + + L L+
Sbjct: 63 PKGLRVGYLSQEPPLDPEKTVLDYVIEGFGELRELLAELEEAYALLADPDDELLAELE-- 120
Query: 438 EKYPDYVLWTALQEVELKDMIMEGAGL---NMTVYEGGTNFSVGQRQLICLARAIVRNNV 494
+ WT E + G G + V ++ S G R+ + LARA++
Sbjct: 121 ALLEELDGWTLEARAE---EALLGLGFPDEDRPV----SSLSGGWRRRVALARALLEEPD 173
Query: 495 ILVLDEATANVD 506
+L+LDE T ++D
Sbjct: 174 LLLLDEPTNHLD 185
Score = 61.5 bits (150), Expect = 6e-10
Identities = 45/202 (22%), Positives = 87/202 (43%), Gaps = 40/202 (19%)
Query: 341 IEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAI-FRLAEVEGVIKI 399
+EF+N + Y G ++K+L+ I ++I IVG GAGKS+L+ + L + G +K+
Sbjct: 322 LEFENVSKGYDGGRLLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELGPLSGTVKV 381
Query: 400 DDIDTEDVPLSKLRSNISI--IPQDPVLFSGTLRKNLDPFEKYPDYVLWTALQEVELKDM 457
+ I Q R LDP +K L + + +++
Sbjct: 382 -------------GETVKIGYFDQH--------RDELDP-DKTVLEELSEGFPDGDEQEV 419
Query: 458 --IMEGAGLNM-TVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATANVDPKT----- 509
+ G + S G++ + LA+ +++ +L+LDE T ++D ++
Sbjct: 420 RAYLGRFGFTGEDQEKPVGVLSGGEKARLLLAKLLLQPPNLLLLDEPTNHLDIESLEALE 479
Query: 510 DLLIQRTIRKKFADCTVLTIAH 531
+ L+ + TVL ++H
Sbjct: 480 EALLDF-------EGTVLLVSH 494
>gnl|CDD|182817 PRK10895, PRK10895, lipopolysaccharide ABC transporter ATP-binding
protein; Provisional.
Length = 241
Score = 60.7 bits (147), Expect = 3e-10
Identities = 49/168 (29%), Positives = 91/168 (54%), Gaps = 5/168 (2%)
Query: 353 GPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAEVE-GVIKIDDIDTEDVPL-S 410
G RV++++++T++ E +G++G GAGK++ + + + G I IDD D +PL +
Sbjct: 15 GRRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISLLPLHA 74
Query: 411 KLRSNISIIPQDPVLFSG-TLRKNLDPFEKYPDYVLWTALQEVELKDMIMEGAGLNMTVY 469
+ R I +PQ+ +F ++ NL + D + +A Q + + +ME +
Sbjct: 75 RARRGIGYLPQEASIFRRLSVYDNLMAVLQIRDDL--SAEQREDRANELMEEFHIEHLRD 132
Query: 470 EGGTNFSVGQRQLICLARAIVRNNVILVLDEATANVDPKTDLLIQRTI 517
G + S G+R+ + +ARA+ N ++LDE A VDP + + I+R I
Sbjct: 133 SMGQSLSGGERRRVEIARALAANPKFILLDEPFAGVDPISVIDIKRII 180
>gnl|CDD|213260 cd03293, ABC_NrtD_SsuB_transporters, ATP-binding cassette domain of
the nitrate and sulfonate transporters. NrtD and SsuB
are the ATP-binding subunits of the bacterial ABC-type
nitrate and sulfonate transport systems, respectively.
ABC transporters are a large family of proteins involved
in the transport of a wide variety of different
compounds, like sugars, ions, peptides, and more complex
organic molecules. The nucleotide binding domain shows
the highest similarity between all members of the
family. ABC transporters are a subset of nucleotide
hydrolases that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing proteins.
Length = 220
Score = 60.2 bits (147), Expect = 3e-10
Identities = 53/240 (22%), Positives = 93/240 (38%), Gaps = 70/240 (29%)
Query: 341 IEFQNTNVRYLSGPR---VIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAEV-EGV 396
+E +N + Y G ++++++++ E + +VG +G GKS+L+ I L G
Sbjct: 1 LEVRNVSKTYGGGGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGE 60
Query: 397 IKIDDIDTEDVPLSKLRSNISIIPQDPVLFSGTLRKNLDPFEKYPDYVLW-TALQEVELK 455
+ +D P++ + + Q L P W T L V L
Sbjct: 61 VLVD-----GEPVTGPGPDRGYVFQQDALL---------P---------WLTVLDNVAL- 96
Query: 456 DMIMEGAGLNMT------VYE---------GGTNF--------SVGQRQLICLARAIVRN 492
GL + E G + F S G RQ + LARA+ +
Sbjct: 97 -------GLELQGVPKAEARERAEELLELVGLSGFENAYPHQLSGGMRQRVALARALAVD 149
Query: 493 NVILVLDEATANVDPKTDLLIQRTI------RKKFADCTVLTIAHRLH-TIMDSDKVLVM 545
+L+LDE + +D T +Q + K TVL + H + + +D+V+V+
Sbjct: 150 PDVLLLDEPFSALDALTREQLQEELLDIWRETGK----TVLLVTHDIDEAVFLADRVVVL 205
>gnl|CDD|172730 PRK14242, PRK14242, phosphate transporter ATP-binding protein;
Provisional.
Length = 253
Score = 60.9 bits (148), Expect = 3e-10
Identities = 61/268 (22%), Positives = 116/268 (43%), Gaps = 47/268 (17%)
Query: 340 KIEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRL------AEV 393
K+E + + Y + + ++++ + ++G +G GKS+ + + R+ A V
Sbjct: 6 KMEARGLSFFY-GDFQALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARV 64
Query: 394 EGVIKIDDIDTED--VPLSKLRSNISIIPQDPVLFSGTLRKNL-------------DPFE 438
EG I +D + D V + +LR + ++ Q P F ++ +N+ E
Sbjct: 65 EGEILLDGENIYDPHVDVVELRRRVGMVFQKPNPFPKSIFENVAYGLRVNGVKDKAYLAE 124
Query: 439 KYPDYVLWTALQEVELKDMIMEGA-GLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILV 497
+ + AL + E+KD + E A GL S GQ+Q +C+ARA+ +L+
Sbjct: 125 RVERSLRHAALWD-EVKDRLHESALGL-----------SGGQQQRLCIARALAVEPEVLL 172
Query: 498 LDEATANVDPKTDLLIQRTIRKKFADCTVLTIAHRLHTIMDSDKVLVMDSGVAVVSSFGF 557
+DE + +DP I+ I + A T++ + H M V F
Sbjct: 173 MDEPASALDPIATQKIEELIHELKARYTIIIVTHN------------MQQAARVSDVTAF 220
Query: 558 FFSKDLIEGTVSAKVLSSRKRREKEDRI 585
F+ LIE + ++ + + ++ ED I
Sbjct: 221 FYMGKLIEVGPTEQIFTRPREKQTEDYI 248
>gnl|CDD|213185 cd03218, ABC_YhbG, ATP-binding cassette component of YhbG transport
system. The ABC transporters belonging to the YhbG
family are similar to members of the Mj1267_LivG family,
which is involved in the transport of branched-chain
amino acids. The genes yhbG and yhbN are located in a
single operon and may function together in cell envelope
during biogenesis. YhbG is the putative ATP-binding
cassette component and YhbN is the putative
periplasmic-binding protein. Depletion of each gene
product leads to growth arrest, irreversible cell damage
and loss of viability in E. coli. The YhbG homolog
(NtrA) is essential in Rhizobium meliloti, a symbiotic
nitrogen-fixing bacterium.
Length = 232
Score = 60.2 bits (147), Expect = 3e-10
Identities = 45/173 (26%), Positives = 85/173 (49%), Gaps = 16/173 (9%)
Query: 355 RVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAEV-EGVIKIDDIDTEDVPLSK-L 412
+V+ +++++ E +G++G GAGK++ I L + G I +D D +P+ K
Sbjct: 14 KVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDITKLPMHKRA 73
Query: 413 RSNISIIPQDPVLFSG-TLRKNLD---PFEKYPDYVLWTALQEVELKDMIMEGAGLNMTV 468
R I +PQ+ +F T+ +N+ +E +L++++ E ++T
Sbjct: 74 RLGIGYLPQEASIFRKLTVEENILAVLEIRGLSK-----KEREEKLEELLEE---FHITH 125
Query: 469 YEG--GTNFSVGQRQLICLARAIVRNNVILVLDEATANVDPKTDLLIQRTIRK 519
++ S G+R+ + +ARA+ N L+LDE A VDP IQ+ I+
Sbjct: 126 LRKSKASSLSGGERRRVEIARALATNPKFLLLDEPFAGVDPIAVQDIQKIIKI 178
>gnl|CDD|226967 COG4608, AppF, ABC-type oligopeptide transport system, ATPase
component [Amino acid transport and metabolism].
Length = 268
Score = 60.7 bits (148), Expect = 4e-10
Identities = 50/204 (24%), Positives = 84/204 (41%), Gaps = 48/204 (23%)
Query: 355 RVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAE-VEGVIKIDDIDTEDVPLSKLR 413
+ + ++ +I E +G+VG +G GKS+L I L E G I + D + + R
Sbjct: 27 KAVDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLEEPTSGEILFEGKDITKLSKEERR 86
Query: 414 SNISIIPQDPVLFSGTLRKNLDPFEKYPDYVLWTALQEVELKDMIMEGAGLNMTVYEGGT 473
E+ + L++V L + L +E
Sbjct: 87 ------------------------ERVLEL-----LEKVGLPEEF-----LYRYPHE--- 109
Query: 474 NFSVGQRQLICLARAIVRNNVILVLDEATANVDPKT-----DLLIQRTIRKKFADCTVLT 528
S GQRQ I +ARA+ N ++V DE + +D +LL + ++++ T L
Sbjct: 110 -LSGGQRQRIGIARALALNPKLIVADEPVSALDVSVQAQILNLL--KDLQEEL-GLTYLF 165
Query: 529 IAHRLHTI-MDSDKVLVMDSGVAV 551
I+H L + SD++ VM G V
Sbjct: 166 ISHDLSVVRYISDRIAVMYLGKIV 189
>gnl|CDD|237453 PRK13633, PRK13633, cobalt transporter ATP-binding subunit;
Provisional.
Length = 280
Score = 60.5 bits (147), Expect = 4e-10
Identities = 59/234 (25%), Positives = 104/234 (44%), Gaps = 44/234 (18%)
Query: 341 IEFQNTNVRYLSG-----PRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFR--LAEV 393
I+ +N + +Y S + ++N+ + E + I+GR G+GKS+ IA L
Sbjct: 5 IKCKNVSYKYESNEESTEKLALDDVNLEVKKGEFLVILGRNGSGKST-IAKHMNALLIPS 63
Query: 394 EGVIKIDDIDTEDVP-LSKLRSNISIIPQDP------------VLFSGTLRKNLDPFE-- 438
EG + +D +DT D L +R+ ++ Q+P V F G + P E
Sbjct: 64 EGKVYVDGLDTSDEENLWDIRNKAGMVFQNPDNQIVATIVEEDVAF-GPENLGIPPEEIR 122
Query: 439 KYPDYVLWTALQEVELKDMIMEGAGLNMTVYEGGTN--FSVGQRQLICLARAIVRNNVIL 496
+ D +L++V M Y S GQ+Q + +A + +
Sbjct: 123 ERVDE----SLKKV------------GMYEYRRHAPHLLSGGQKQRVAIAGILAMRPECI 166
Query: 497 VLDEATANVDPKTDLLIQRTIRK--KFADCTVLTIAHRLHTIMDSDKVLVMDSG 548
+ DE TA +DP + TI++ K T++ I H + +++D+++VMDSG
Sbjct: 167 IFDEPTAMLDPSGRREVVNTIKELNKKYGITIILITHYMEEAVEADRIIVMDSG 220
>gnl|CDD|181939 PRK09544, znuC, high-affinity zinc transporter ATPase; Reviewed.
Length = 251
Score = 60.1 bits (146), Expect = 5e-10
Identities = 67/209 (32%), Positives = 103/209 (49%), Gaps = 48/209 (22%)
Query: 355 RVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRL-AEVEGVIKIDDIDTEDVPLSKLR 413
RV+ ++++ + P + + ++G GAGKS+L+ + L A EGVIK + KLR
Sbjct: 18 RVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVIKRNG---------KLR 68
Query: 414 SNISIIPQ----DPVL---FSGTLRKNLDPFEKYPDYVLWTALQEVE---LKDMIMEGAG 463
I +PQ D L + LR L P K D + AL+ V+ L D M+
Sbjct: 69 --IGYVPQKLYLDTTLPLTVNRFLR--LRPGTKKED--ILPALKRVQAGHLIDAPMQ--- 119
Query: 464 LNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATANVDPKT-----DLLIQRTIR 518
S G+ Q + LARA++ +LVLDE T VD DL+ Q +R
Sbjct: 120 ----------KLSGGETQRVLLARALLNRPQLLVLDEPTQGVDVNGQVALYDLIDQ--LR 167
Query: 519 KKFADCTVLTIAHRLHTIM-DSDKVLVMD 546
++ DC VL ++H LH +M +D+VL ++
Sbjct: 168 REL-DCAVLMVSHDLHLVMAKTDEVLCLN 195
>gnl|CDD|184588 PRK14243, PRK14243, phosphate transporter ATP-binding protein;
Provisional.
Length = 264
Score = 60.2 bits (146), Expect = 5e-10
Identities = 63/243 (25%), Positives = 113/243 (46%), Gaps = 38/243 (15%)
Query: 340 KIEFQNTNVRYLSGPRVIKNLNITIHPKEKI-GIVGRTGAGKSSLIAAIFRL------AE 392
+ +N NV Y S +KN+ + I PK +I +G +G GKS+++ RL
Sbjct: 10 VLRTENLNVYYGSF-LAVKNVWLDI-PKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFR 67
Query: 393 VEGVIKIDD--IDTEDVPLSKLRSNISIIPQDPVLFSGTLRKNL------DPFEKYPDYV 444
VEG + + DV ++R I ++ Q P F ++ N+ + ++ D +
Sbjct: 68 VEGKVTFHGKNLYAPDVDPVEVRRRIGMVFQKPNPFPKSIYDNIAYGARINGYKGDMDEL 127
Query: 445 LWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAI-VRNNVILVLDEATA 503
+ +L++ L D + + + + G + S GQ+Q +C+ARAI V+ VIL +DE +
Sbjct: 128 VERSLRQAALWDEVKD------KLKQSGLSLSGGQQQRLCIARAIAVQPEVIL-MDEPCS 180
Query: 504 NVDPKTDLLIQRTIRKKFADCTVLTIAHRLHTIMDSDKVLVMDSGVAVVSSFGFFFSKDL 563
+DP + L I+ + + T++ + H + A VS FF+ +L
Sbjct: 181 ALDPISTLRIEELMHELKEQYTIIIVTHNMQQ-------------AARVSDMTAFFNVEL 227
Query: 564 IEG 566
EG
Sbjct: 228 TEG 230
>gnl|CDD|237652 PRK14275, PRK14275, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 286
Score = 60.7 bits (147), Expect = 5e-10
Identities = 63/248 (25%), Positives = 109/248 (43%), Gaps = 40/248 (16%)
Query: 357 IKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAEV------EGVIKIDDID-----TE 405
+K +N I K I+G +G GKS+ + AI R+ ++ G + D D T+
Sbjct: 55 VKKVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIYGKFTD 114
Query: 406 DVPLSKLRSNISIIPQDPVLFSGTLRKNL--DPF------EKYPDYVLWTALQEVELKDM 457
+V LR I ++ Q P F ++ N+ P +K + ++ +L++ L D
Sbjct: 115 EV---LLRKKIGMVFQKPNPFPKSIFDNIAYGPRLHGINDKKQLEEIVEKSLRKAALWDE 171
Query: 458 IMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATANVDPKTDLLIQRTI 517
+ + N S GQ+Q +C+AR + IL+LDE T+ +DPK I+ I
Sbjct: 172 VSDRLDKN------ALGLSGGQQQRLCVARTLAVEPEILLLDEPTSALDPKATAKIEDLI 225
Query: 518 RKKFADCTVLTIAHRLHTIMDSDKVLVMDSGVAVVSSFGFFFSKDLIEGTVSAKVLSSRK 577
++ T++ + H M V FF+ L+E +A++ ++ K
Sbjct: 226 QELRGSYTIMIVTHN------------MQQASRVSDYTMFFYEGVLVEHAPTAQLFTNPK 273
Query: 578 RREKEDRI 585
R ED I
Sbjct: 274 DRMTEDYI 281
>gnl|CDD|130234 TIGR01166, cbiO, cobalt transport protein ATP-binding subunit.
This model describes the ATP binding subunit of the
multisubunit cobalt transporter in bacteria and its
equivalents in archaea. The model is restricted to ATP
subunit that is a part of the cobalt transporter, which
belongs to the ABC transporter superfamily (ATP Binding
Cassette). The model excludes ATP binding subunit that
are associated with other transporters belonging to ABC
transporter superfamily. This superfamily includes two
groups, one which catalyze the uptake of small
molecules, including ions from the external milieu and
the other group which is engaged in the efflux of small
molecular weight compounds and ions from within the
cell. Energy derived from the hydrolysis of ATP drive
the both the process of uptake and efflux [Transport and
binding proteins, Cations and iron carrying compounds].
Length = 190
Score = 59.0 bits (143), Expect = 5e-10
Identities = 47/189 (24%), Positives = 83/189 (43%), Gaps = 14/189 (7%)
Query: 350 YLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIF-RLAEVEGVIKID--DIDTED 406
Y GP V+K LN E + ++G GAGKS+L+ + L G + ID +D
Sbjct: 1 YPGGPEVLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGEPLDYSR 60
Query: 407 VPLSKLRSNISIIPQDP--VLFSGTLRKNLDPFEKYPDYVLWTALQEVELKDMIMEG-AG 463
L + R + ++ QDP LF+ + + L L E E++ + E
Sbjct: 61 KGLLERRQRVGLVFQDPDDQLFAADV------DQDVAFGPLNLGLSEAEVERRVREALTA 114
Query: 464 LNMTVYEGG--TNFSVGQRQLICLARAIVRNNVILVLDEATANVDPKTDLLIQRTIRKKF 521
+ + S G+++ + +A A+ +L+LDE TA +DP + +R+
Sbjct: 115 VGASGLRERPTHCLSGGEKKRVAIAGAVAMRPDVLLLDEPTAGLDPAGREQMLAILRRLR 174
Query: 522 ADCTVLTIA 530
A+ + I+
Sbjct: 175 AEGMTVVIS 183
>gnl|CDD|184594 PRK14264, PRK14264, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 305
Score = 60.2 bits (146), Expect = 7e-10
Identities = 53/219 (24%), Positives = 105/219 (47%), Gaps = 29/219 (13%)
Query: 340 KIEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRL------AEV 393
K+ ++ +V Y +K +++ I K ++G +G GKS+ + + R+ A +
Sbjct: 45 KLSVEDLDVYY-GDDHALKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARI 103
Query: 394 EGVIKID--DIDTEDVPLSKLRSNISIIPQDPVLFSGTLRKNLD--PFEKYPDYVLWTAL 449
+G +++D DI + V L +LR + ++ Q P F ++R+N+ P K+ D + T L
Sbjct: 104 DGSVELDGQDIYQDGVNLVELRKRVGMVFQSPNPFPKSIRENISYGP-RKHGD--INTGL 160
Query: 450 -----------QEVELKDMIMEGAGL----NMTVYEGGTNFSVGQRQLICLARAIVRNNV 494
E EL + + A L N + + S GQ+Q +C+AR + +
Sbjct: 161 LARLLGRDDKDAEDELVERSLRQAALWDEVNDRLDDNALGLSGGQQQRLCIARCLAVDPE 220
Query: 495 ILVLDEATANVDPKTDLLIQRTIRKKFADCTVLTIAHRL 533
++++DE + +DP I+ I + + TV+ + H +
Sbjct: 221 VILMDEPASALDPIATSKIEDLIEELAEEYTVVVVTHNM 259
>gnl|CDD|237650 PRK14265, PRK14265, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 274
Score = 59.6 bits (144), Expect = 7e-10
Identities = 53/260 (20%), Positives = 118/260 (45%), Gaps = 43/260 (16%)
Query: 350 YLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRL------AEVEGVIKIDDID 403
+ G + ++++ I K+ I +G +G GKS+L+ R+ A+VEG + D +
Sbjct: 29 FYGGFLALVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRN 88
Query: 404 TEDVPLS--KLRSNISIIPQDPVLFSGTLRKNL------DPFEKYPDYVLWTALQEVELK 455
D ++ KLR + ++ Q P F ++ +N+ + ++ D ++ +L+ +
Sbjct: 89 IYDSQINSVKLRRQVGMVFQRPNPFPKSIYENIAFAPRANGYKGNLDELVEDSLRRAAIW 148
Query: 456 DMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATANVDPKTDLLIQR 515
+ + + + E GT S GQ+Q +C+ARAI +L++DE + +DP + ++
Sbjct: 149 EEVKD------KLKEKGTALSGGQQQRLCIARAIAMKPDVLLMDEPCSALDPISTRQVEE 202
Query: 516 TIRKKFADCTVLTIAHRLHTIMDSDKVLVMDSGVAVVSSFGFFFSKD----------LIE 565
+ T++ + H + + V+ + FF+ + L+E
Sbjct: 203 LCLELKEQYTIIMVTHNMQQ-------------ASRVADWTAFFNTEIDEYGKRRGKLVE 249
Query: 566 GTVSAKVLSSRKRREKEDRI 585
+ + ++ S + +E + I
Sbjct: 250 FSPTEQMFGSPQTKEAREYI 269
>gnl|CDD|184205 PRK13646, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 286
Score = 59.8 bits (145), Expect = 8e-10
Identities = 60/234 (25%), Positives = 106/234 (45%), Gaps = 32/234 (13%)
Query: 340 KIEFQNTNVRYLSGP----RVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAE-VE 394
I F N + Y G + I ++N + IVG+TG+GKS+LI I L +
Sbjct: 2 TIRFDNVSYTYQKGTPYEHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTT 61
Query: 395 GVIKIDDID----TEDVPLSKLRSNISIIPQDP--VLFSGTLRKNLD--------PFEKY 440
G + +DDI T+D + +R I ++ Q P LF T+ + + ++
Sbjct: 62 GTVTVDDITITHKTKDKYIRPVRKRIGMVFQFPESQLFEDTVEREIIFGPKNFKMNLDEV 121
Query: 441 PDYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDE 500
+Y L ++ +M + M S GQ + I + + N I+VLDE
Sbjct: 122 KNYA-HRLLMDLGFSRDVMSQSPFQM---------SGGQMRKIAIVSILAMNPDIIVLDE 171
Query: 501 ATANVDPKTDLLIQRTIRKKFAD--CTVLTIAHRLHTIMD-SDKVLVMDSGVAV 551
TA +DP++ + R ++ D T++ ++H ++ + +D+V+VM G V
Sbjct: 172 PTAGLDPQSKRQVMRLLKSLQTDENKTIILVSHDMNEVARYADEVIVMKEGSIV 225
>gnl|CDD|132302 TIGR03258, PhnT, 2-aminoethylphosphonate ABC transport system,
ATP-binding component PhnT. This ATP-binding component
of an ABC transport system is found in Salmonella and
Burkholderia lineages in the vicinity of enzymes for the
breakdown of 2-aminoethylphosphonate.
Length = 362
Score = 60.4 bits (146), Expect = 9e-10
Identities = 60/228 (26%), Positives = 99/228 (43%), Gaps = 34/228 (14%)
Query: 339 GKIEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSL---IAAIFRLAEVEG 395
G I + V Y V+ +L++ I E + ++G++G GK++L IA + A + G
Sbjct: 4 GGIRIDHLRVAY-GANTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLTG 62
Query: 396 VIKIDDIDTEDVP-----LSKLRSNISIIPQ----DPVLFSGTLRK--NLDPFEKYPDYV 444
I I D D P L+ L N ++ P D V F +K D E+ D
Sbjct: 63 RIAIADRDLTHAPPHKRGLALLFQNYALFPHLKVEDNVAFGLRAQKMPKADIAERVAD-- 120
Query: 445 LWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATAN 504
AL+ V L D A ++ S G +Q I +ARAI +L+LDE +
Sbjct: 121 ---ALKLVGLGD-----AAAHLP-----AQLSGGMQQRIAIARAIAIEPDVLLLDEPLSA 167
Query: 505 VDPKTDLLIQRTIR---KKFADCTVLTIAH-RLHTIMDSDKVLVMDSG 548
+D ++ I ++ + T+L + H + + +DK +M G
Sbjct: 168 LDANIRANMREEIAALHEELPELTILCVTHDQDDALTLADKAGIMKDG 215
>gnl|CDD|236707 PRK10522, PRK10522, multidrug transporter membrane
component/ATP-binding component; Provisional.
Length = 547
Score = 60.8 bits (148), Expect = 1e-09
Identities = 52/220 (23%), Positives = 86/220 (39%), Gaps = 25/220 (11%)
Query: 340 KIEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSS---LIAAIFRLAEVEGV 396
+E +N Y + +N+TI E + ++G G+GKS+ L+ +++ G
Sbjct: 322 TLELRNVTFAYQDNGFSVGPINLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQ--PQSGE 379
Query: 397 IKIDDIDTEDVPLSKLRSNISIIPQDPVLFSGTLRKNLDPFEKYPDYV-LWTALQEVELK 455
I +D R S + D LF L + P V W ++ K
Sbjct: 380 ILLDGKPVTAEQPEDYRKLFSAVFTDFHLFDQLLGP--EGKPANPALVEKWLERLKMAHK 437
Query: 456 DMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATANVDPK------T 509
+ +G N S GQ++ + L A+ IL+LDE A+ DP
Sbjct: 438 LELEDGRISN-------LKLSKGQKKRLALLLALAEERDILLLDEWAADQDPHFRREFYQ 490
Query: 510 DLLIQRTIRKKFADCTVLTIAHRLHTIMDSDKVLVMDSGV 549
LL K T+ I+H H + +D++L M +G
Sbjct: 491 VLLPLLQEMGK----TIFAISHDDHYFIHADRLLEMRNGQ 526
>gnl|CDD|188394 TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-binding subunit,
PQQ-dependent alcohol dehydrogenase system. Members of
this protein family are the ATP-binding subunit of an
ABC transporter system that is associated with PQQ
biosynthesis and PQQ-dependent alcohol dehydrogenases.
While this family shows homology to several efflux ABC
transporter subunits, the presence of a periplasmic
substrate-binding protein and association with systems
for catabolism of alcohols suggests a role in import
rather than detoxification [Transport and binding
proteins, Carbohydrates, organic alcohols, and acids].
Length = 236
Score = 58.8 bits (143), Expect = 1e-09
Identities = 52/214 (24%), Positives = 94/214 (43%), Gaps = 21/214 (9%)
Query: 346 TNVRYLSGPR-VIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRL-AEVEGVIKIDDID 403
+ + G R + +++ T+ P + ++G GAGKS+L + + RL EG I + D
Sbjct: 5 AGLSFRYGARRALDDVSFTVRPGRFVALLGPNGAGKSTLFSLLTRLYVAQEGQISVAGHD 64
Query: 404 TEDVPLSKLRSNISIIPQDPVL-FSGTLRKNLDPFEKYPDYVLWTALQ-----EVELK-D 456
P + L + ++ Q P L ++R+NL AL E +
Sbjct: 65 LRRAPRAALAR-LGVVFQQPTLDLDLSVRQNLRYH---------AALHGLSRAEARARIA 114
Query: 457 MIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATANVDPKTDLLIQRT 516
++ GL + + G R+ + +ARA++ +L+LDE T +DP + I
Sbjct: 115 ELLARLGLAERADDKVRELNGGHRRRVEIARALLHRPALLLLDEPTVGLDPASRAAITAH 174
Query: 517 IRKKFAD--CTVLTIAHRLHTIMDSDKVLVMDSG 548
+R D +VL H + I D+++V+ G
Sbjct: 175 VRALARDQGLSVLWATHLVDEIEADDRLVVLHRG 208
>gnl|CDD|132050 TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine ABC transporter,
ATP-binding protein. Members of this family are the
ATP-binding protein of a conserved four gene ABC
transporter operon found next to ectoine unilization
operons and ectoine biosynthesis operons. Ectoine is a
compatible solute that protects enzymes from high
osmolarity. It is released by some species in response
to hypoosmotic shock, and it is taken up by a number of
bacteria as a compatible solute or for consumption. This
family shows strong sequence similiarity to a number of
amino acid ABC transporter ATP-binding proteins.
Length = 252
Score = 59.1 bits (143), Expect = 1e-09
Identities = 56/227 (24%), Positives = 108/227 (47%), Gaps = 23/227 (10%)
Query: 341 IEFQNTNVRYLSGP-RVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAEV-EGVIK 398
+ F + R+ G V+ LN ++ EK+ ++G +G+GKS+++ + L + EG I+
Sbjct: 1 VRFSDVTKRF--GILTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPIDEGQIQ 58
Query: 399 IDD-------------IDTEDVPLSKLRSNISIIPQDPVLFSGTLRKNLDPFEKYPDYVL 445
++ + ++ L ++R+ I ++ Q LF + LD + P VL
Sbjct: 59 VEGEQLYHMPGRNGPLVPADEKHLRQMRNKIGMVFQSFNLFPH--KTVLDNVTEAPVLVL 116
Query: 446 WTALQEVELKDM-IMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATAN 504
A E E + M +++ GL S GQ+Q + +ARA+ +++ DE T+
Sbjct: 117 GMARAEAEKRAMELLDMVGLADKADHMPAQLSGGQQQRVAIARALAMRPKVMLFDEVTSA 176
Query: 505 VDPKTDLLIQRTIRKKFA--DCTVLTIAHRLHTIMD-SDKVLVMDSG 548
+DP+ + IR+ + D T+L + H + + +D+V D G
Sbjct: 177 LDPELVGEVLNVIRRLASEHDLTMLLVTHEMGFAREFADRVCFFDKG 223
>gnl|CDD|130355 TIGR01288, nodI, ATP-binding ABC transporter family nodulation
protein NodI. This protein is required for normal
nodulation by nitrogen-fixing root nodule bacteria such
as Mesorhizobium loti. It is a member of the family of
ABC transporter ATP binding proteins and works with NodJ
to export a nodulation signal molecule. This model does
not recognize the highly divergent NodI from
Azorhizobium caulinodans [Cellular processes, Other,
Transport and binding proteins, Other].
Length = 303
Score = 59.6 bits (144), Expect = 1e-09
Identities = 61/221 (27%), Positives = 99/221 (44%), Gaps = 27/221 (12%)
Query: 346 TNVRYLSGPRVIKN-LNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAEV-EGVIKIDDID 403
V G +V+ N L+ TI E G++G GAGKS++ + + G I +
Sbjct: 8 VGVSKSYGDKVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPDRGKITVLG-- 65
Query: 404 TEDVP--LSKLRSNISIIPQ-DPVLFSGTLRKNLDPFEKYPDYVLWTALQEVELKDMI-- 458
E VP R I ++PQ D + T+R+NL F +Y + E++ +I
Sbjct: 66 -EPVPSRARLARVAIGVVPQFDNLDPEFTVRENLLVFGRY------FGMSTREIEAVIPS 118
Query: 459 -MEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATANVDPKTDLLIQRTI 517
+E A L S G ++ + LARA++ + +L+LDE T +DP LI +
Sbjct: 119 LLEFARLESKADVRVALLSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERL 178
Query: 518 RKKFA-DCTVLTIAHRLHTIMDS-----DKVLVMDSGVAVV 552
R A T+L H M+ D++ V++SG +
Sbjct: 179 RSLLARGKTILLTTH----FMEEAERLCDRLCVLESGRKIA 215
>gnl|CDD|237420 PRK13537, PRK13537, nodulation ABC transporter NodI; Provisional.
Length = 306
Score = 59.4 bits (144), Expect = 1e-09
Identities = 59/200 (29%), Positives = 94/200 (47%), Gaps = 20/200 (10%)
Query: 341 IEFQNTNVRYLSGPR-VIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAEVE-GVIK 398
I+F+N RY G + V+ L+ + E G++G GAGK++ + + L + G I
Sbjct: 8 IDFRNVEKRY--GDKLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSIS 65
Query: 399 IDDIDTEDVP--LSKLRSNISIIPQ----DPVLFSGTLRKNLDPFEKYPDYVLWTALQEV 452
+ E VP R + ++PQ DP T+R+NL F +Y + L +A
Sbjct: 66 LCG---EPVPSRARHARQRVGVVPQFDNLDPDF---TVRENLLVFGRY--FGL-SAAAAR 116
Query: 453 ELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATANVDPKTDLL 512
L ++E A L S G ++ + LARA+V + +LVLDE T +DP+ L
Sbjct: 117 ALVPPLLEFAKLENKADAKVGELSGGMKRRLTLARALVNDPDVLVLDEPTTGLDPQARHL 176
Query: 513 IQRTIRKKFADC-TVLTIAH 531
+ +R A T+L H
Sbjct: 177 MWERLRSLLARGKTILLTTH 196
>gnl|CDD|213201 cd03234, ABCG_White, White pigment protein homolog of ABCG
transporter subfamily. The White subfamily represents
ABC transporters homologous to the Drosophila white
gene, which acts as a dimeric importer for eye pigment
precursors. The eye pigmentation of Drosophila is
developed from the synthesis and deposition in the cells
of red pigments, which are synthesized from guanine, and
brown pigments, which are synthesized from tryptophan.
The pigment precursors are encoded by the white, brown,
and scarlet genes, respectively. Evidence from genetic
and biochemical studies suggest that the White and Brown
proteins function as heterodimers to import guanine,
while the White and Scarlet proteins function to import
tryptophan. However, a recent study also suggests that
White may be involved in the transport of a metabolite,
such as 3-hydroxykynurenine, across intracellular
membranes. Mammalian ABC transporters belonging to the
White subfamily (ABCG1, ABCG5, and ABCG8) have been
shown to be involved in the regulation of
lipid-trafficking mechanisms in macrophages,
hepatocytes, and intestinal mucosa cells. ABCG1 (ABC8),
the human homolog of the Drosophila white gene is
induced in monocyte-derived macrophages during
cholesterol influx mediated by acetylated low-density
lipoprotein. It is possible that human ABCG1 forms
heterodimers with several heterologous partners.
Length = 226
Score = 58.1 bits (141), Expect = 1e-09
Identities = 48/214 (22%), Positives = 96/214 (44%), Gaps = 24/214 (11%)
Query: 355 RVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAEVEGVIKIDDIDTEDVPLSK--L 412
R++ ++++ + + + I+G +G+GK++L+ AI E G I P
Sbjct: 21 RILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVE-GGGTTSGQILFNGQPRKPDQF 79
Query: 413 RSNISIIPQDPVLFSG-TLRKNLDPFEKYPDYVLWTALQEV---ELKDMIMEGAGLNMTV 468
+ ++ + QD +L G T+R+ L Y L ++ +E L
Sbjct: 80 QKCVAYVRQDDILLPGLTVRETL-------TYTAILRLPRKSSDAIRKKRVEDVLLRDLA 132
Query: 469 YE--GGTNF---SVGQRQLICLARAIVRNNVILVLDEATANVDPKTDLLIQRTIRKKFA- 522
GG S G+R+ + +A ++ + +L+LDE T+ +D T L + T+ + A
Sbjct: 133 LTRIGGNLVKGISGGERRRVSIAVQLLWDPKVLILDEPTSGLDSFTALNLVSTLS-QLAR 191
Query: 523 -DCTVLTIAHRLHTIMDS--DKVLVMDSGVAVVS 553
+ V+ H+ + + D++L++ SG V S
Sbjct: 192 RNRIVILTIHQPRSDLFRLFDRILLLSSGEIVYS 225
>gnl|CDD|226963 COG4604, CeuD, ABC-type enterochelin transport system, ATPase
component [Inorganic ion transport and metabolism].
Length = 252
Score = 58.5 bits (142), Expect = 2e-09
Identities = 57/226 (25%), Positives = 103/226 (45%), Gaps = 27/226 (11%)
Query: 341 IEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAEVE-GVIKI 399
I +N + Y V+ ++++ I I+G GAGKS+L++ + RL + + G I I
Sbjct: 2 ITIENVSKSY-GTKVVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKKDSGEITI 60
Query: 400 DDIDTEDVPLSKLRSNISIIPQDPVLFSGTLRKNLDPFEKYP---------DYVLWT-AL 449
D ++ P +L +SI+ Q+ + S ++L F ++P D + A+
Sbjct: 61 DGLELTSTPSKELAKKLSILKQENHINSRLTVRDLVGFGRFPYSQGRLTKEDRRIINEAI 120
Query: 450 QEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATANVDPKT 509
+ + L+D+ S GQRQ +A + ++ ++LDE N+D K
Sbjct: 121 EYLHLEDL----------SDRYLDELSGGQRQRAFIAMVLAQDTDYVLLDEPLNNLDMKH 170
Query: 510 DLLIQRTIRKKFADCTVLTIAHRLHTI----MDSDKVLVMDSGVAV 551
+ I + +R + AD TI LH I SD ++ + +G V
Sbjct: 171 SVQIMKILR-RLADELGKTIVVVLHDINFASCYSDHIVALKNGKVV 215
>gnl|CDD|132313 TIGR03269, met_CoM_red_A2, methyl coenzyme M reductase system,
component A2. The enzyme that catalyzes the final step
in methanogenesis, methyl coenzyme M reductase, contains
alpha, beta, and gamma chains. In older literature, the
complex of alpha, beta, and gamma chains was termed
component C, while this single chain protein was termed
methyl coenzyme M reductase system component A2 [Energy
metabolism, Methanogenesis].
Length = 520
Score = 59.8 bits (145), Expect = 2e-09
Identities = 67/294 (22%), Positives = 119/294 (40%), Gaps = 64/294 (21%)
Query: 341 IEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLI--------------AA 386
IE +N ++ G V+KN++ TI E +GI+GR+GAGKS L+
Sbjct: 1 IEVKNLTKKF-DGKEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGRI 59
Query: 387 IFRLAEVEGV----------------------IKIDDIDTEDVPLSKLRSNISIIPQDPV 424
I+ +A E ++D + D ++R I+I+ Q
Sbjct: 60 IYHVALCEKCGYVERPSKVGEPCPVCGGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQRTF 119
Query: 425 LFSGTLRKNLDPFEKYPD--YVLWTALQE-VELKDMIMEGAGLNMTVYEGGTNFSVGQRQ 481
G + E + Y A+ V+L +M+ L+ + + S G++Q
Sbjct: 120 ALYGDDTVLDNVLEALEEIGYEGKEAVGRAVDLIEMVQ----LSHRITHIARDLSGGEKQ 175
Query: 482 LICLARAIVRNNVILVLDEATANVDPKTDLLIQRTIRK--KFADCTVLTIAHRLHTIMD- 538
+ LAR + + + + DE T +DP+T L+ + + K + +++ +H I D
Sbjct: 176 RVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTSHWPEVIEDL 235
Query: 539 SDKVLVMDSGVAVVSSFGFFFSKDLIEGT---VSAKVLSSRK--RREKEDRIGE 587
SDK + +++G EGT V A + +E E +GE
Sbjct: 236 SDKAIWLENGEIKE------------EGTPDEVVAVFMEGVSEVEKECEVEVGE 277
Score = 51.7 bits (124), Expect = 6e-07
Identities = 62/248 (25%), Positives = 113/248 (45%), Gaps = 41/248 (16%)
Query: 327 NYEDENEIWPVLGKIEFQNTNVRYLSGPR-VIK---NLNITIHPKEKIGIVGRTGAGKSS 382
E I I+ +N + RY+S R V+K N+++ + E GIVG +GAGK++
Sbjct: 272 EVEVGEPI------IKVRNVSKRYISVDRGVVKAVDNVSLEVKEGEIFGIVGTSGAGKTT 325
Query: 383 L---IAAIFRLAEVEGVIKIDD--ID-TEDVPLSKLRSN--ISIIPQDPVLFS-GTLRKN 433
L IA + E +++ D +D T+ P + R+ I I+ Q+ L+ T+ N
Sbjct: 326 LSKIIAGVLEPTSGEVNVRVGDEWVDMTKPGPDGRGRAKRYIGILHQEYDLYPHRTVLDN 385
Query: 434 LD-------PFE---KYPDYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLI 483
L P E L + E + I++ + S G+R +
Sbjct: 386 LTEAIGLELPDELARMKAVITLKMVGFDEEKAEEILDKYPDEL---------SEGERHRV 436
Query: 484 CLARAIVRNNVILVLDEATANVDPKTDLLIQRTIRK--KFADCTVLTIAHRLHTIMD-SD 540
LA+ +++ I++LDE T +DP T + + +I K + + T + ++H + ++D D
Sbjct: 437 ALAQVLIKEPRIVILDEPTGTMDPITKVDVTHSILKAREEMEQTFIIVSHDMDFVLDVCD 496
Query: 541 KVLVMDSG 548
+ +M G
Sbjct: 497 RAALMRDG 504
>gnl|CDD|213236 cd03269, ABC_putative_ATPase, ATP-binding cassette domain of an
uncharacterized transporter. This subgroup is related
to the subfamily A transporters involved in drug
resistance, nodulation, lipid transport, and bacteriocin
and lantibiotic immunity. In eubacteria and archaea, the
typical organization consists of one ABC and one or two
integral membranes. ABC transporters are a large family
of proteins involved in the transport of a wide variety
of different compounds, like sugars, ions, peptides and
more complex organic molecules. The nucleotide binding
domain shows the highest similarity between all members
of the family. ABC transporters are a subset of
nucleotide hydrolases that contain a signature motif,
Q-loop, and H-loop/switch region in addition to the
Walker A motif/P-loop and Walker B motif commonly found
in a number of ATP- and GTP-binding and hydrolyzing
proteins.
Length = 210
Score = 56.9 bits (138), Expect = 3e-09
Identities = 54/229 (23%), Positives = 100/229 (43%), Gaps = 38/229 (16%)
Query: 341 IEFQNTNVRYLSGP-RVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFR-LAEVEGVIK 398
+E +N R+ G + +++ ++ E G++G GAGK++ I I + G +
Sbjct: 1 LEVENVTKRF--GRVTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVL 58
Query: 399 IDD--IDTEDVPLSKLRSNISIIP-----------QDPVLFSGTLRKNLDPFEKYPDYVL 445
D +D R+ I +P D +++ L K L E
Sbjct: 59 FDGKPLDIAA------RNRIGYLPEERGLYPKMKVIDQLVYLAQL-KGLKKEEARRRIDE 111
Query: 446 WTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATANV 505
W L+ +EL + N V E S G +Q + A++ + +L+LDE + +
Sbjct: 112 W--LERLELSEY------ANKRVEE----LSKGNQQKVQFIAAVIHDPELLILDEPFSGL 159
Query: 506 DPKTDLLIQRTIRK-KFADCTVLTIAHRLHTIMD-SDKVLVMDSGVAVV 552
DP L++ IR+ A TV+ H++ + + D+VL+++ G AV+
Sbjct: 160 DPVNVELLKDVIRELARAGKTVILSTHQMELVEELCDRVLLLNKGRAVL 208
>gnl|CDD|130262 TIGR01194, cyc_pep_trnsptr, cyclic peptide transporter. This model
describes cyclic peptide transporter in bacteria.
Bacteria have elaborate pathways for the production of
toxins and secondary metabolites. Many such compounds,
including syringomycin and pyoverdine are synthesized on
non-ribosomal templates consisting of a multienzyme
complex. On several occasions the proteins of the
complex and transporter protein are present on the same
operon. Often times these compounds cross the biological
membrane by specific transporters. Syringomycin is an
amphipathic, cylclic lipodepsipeptide when inserted into
host causes formation of channels, permeable to variety
of cations. On the other hand, pyoverdine is a cyclic
octa-peptidyl dihydroxyquinoline, which is efficient in
sequestering iron for uptake [Transport and binding
proteins, Amino acids, peptides and amines, Transport
and binding proteins, Other].
Length = 555
Score = 59.2 bits (143), Expect = 3e-09
Identities = 107/542 (19%), Positives = 200/542 (36%), Gaps = 68/542 (12%)
Query: 46 IVNNTINQHHHFHLLSTESYIGIYFSLIVGLFVAGISRSTAFYSACMRCSKGIHKKMFEA 105
+NN I++ + S S+ G+ L+ LF G A+ M + + E
Sbjct: 40 SINNAIHEENFLGQGSLFSFGGL--CLLALLFRIGADIFPAYAG--MHIIANLRIALCEK 95
Query: 106 VVYSPLAFFSTNPSGRILNRFSKDMGAV-DEVLPKAMLDAAQGVMQVSGALIVSLSVNPL 164
++ +P+ + ++ + D+ + + + A + A + LSV P+
Sbjct: 96 ILGAPIEEIDRRGAHNLIPLLTHDIDQINAFLFIFPPIAIALAIFFFCIAYLAYLSV-PM 154
Query: 165 FSIPVLILLYLFWRLSKAYLRTSKSLKYLEGVTRSPVFTHLN----ACLHGLPTIRAHGA 220
F+I + ++ + L K+ N A G ++ HG
Sbjct: 155 FAITISAIII---GTAAQLLAFMGGFKFFHAA--RDEEDAFNEHTHAIAFGAKELKIHGI 209
Query: 221 AKI------LVEEFDYHQDLHSSTWHLFV----YTNMGFAYLIDFLCLLYLSTILISFFF 270
++ + E + DLH +F+ + + F LI C L+ +
Sbjct: 210 RRLSFAHGAIQESANNIADLHIIEILIFIAAENFGQLLFFLLIG--CALFAAA------M 261
Query: 271 FADIGGK-VGLAVTQTMTLMGVVQWAMRQAAEVENHMISVKRLVEY----TKLEPEGNLS 325
FA I + V + + G ++ + + I+ +RL ++ + EPE LS
Sbjct: 262 FASIDAAAISAFVLALLYIKGPLEMLVSALPILAQAQIACQRLADFGERFNEPEPELELS 321
Query: 326 ----PNYEDENEIWPVLGKIEFQNTNVRYL----SGPRVIKNLNITIHPKEKIGIVGRTG 377
++ IE ++ ++ S + +++ I + + IVG G
Sbjct: 322 DADNVLLLAHDKSV---DSIELKDVHMNPKAPEGSEGFALGPIDLRIAQGDIVFIVGENG 378
Query: 378 AGKSSLIAAIFRL-AEVEGVIKIDDIDTEDVPLSKLRSNISIIPQDPVLFSGTLRKNLDP 436
GKS+L L EG I +D R S I D LF + D
Sbjct: 379 CGKSTLAKLFCGLYIPQEGEILLDGAAVSADSRDDYRDLFSAIFADFHLFDDLIGP--DE 436
Query: 437 FEKYPDYVLWTALQEVELKDMI-MEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVI 495
E LQ +E+ D + +E G + T T S GQ++ + L A + + I
Sbjct: 437 GEHASLDNAQQYLQRLEIADKVKIEDGGFSTT-----TALSTGQQKRLALICAWLEDRPI 491
Query: 496 LVLDEATANVDPK------TDLLIQRTIRKKFADCTVLTIAHRLHTIMDSDKVLVMDSGV 549
L+ DE A+ DP +LL + K T++ I+H +D+++ + +G
Sbjct: 492 LLFDEWAADQDPAFKRFFYEELLPDLKRQGK----TIIIISHDDQYFELADQIIKLAAGC 547
Query: 550 AV 551
V
Sbjct: 548 IV 549
>gnl|CDD|213232 cd03265, ABC_DrrA, Daunorubicin/doxorubicin resistance ATP-binding
protein. DrrA is the ATP-binding protein component of a
bacterial exporter complex that confers resistance to
the antibiotics daunorubicin and doxorubicin. In
addition to DrrA, the complex includes an integral
membrane protein called DrrB. DrrA belongs to the ABC
family of transporters and shares sequence and
functional similarities with a protein found in cancer
cells called P-glycoprotein. ABC transporters are a
large family of proteins involved in the transport of a
wide variety of different compounds, like sugars, ions,
peptides, and more complex organic molecules. The
nucleotide binding domain shows the highest similarity
between all members of the family. ABC transporters are
a subset of nucleotide hydrolases that contain a
signature motif, Q-loop, and H-loop/switch region in
addition to the Walker A motif/P-loop and Walker B motif
commonly found in a number of ATP- and GTP-binding and
hydrolyzing proteins.
Length = 220
Score = 57.0 bits (138), Expect = 4e-09
Identities = 50/221 (22%), Positives = 92/221 (41%), Gaps = 20/221 (9%)
Query: 341 IEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAEV---EGVI 397
IE +N +Y ++ ++ + E G++G GAGK++ I + L + +
Sbjct: 1 IEVENLVKKY-GDFEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATV 59
Query: 398 KIDDIDTEDVPLSKLRSNISIIPQDPVLFSG-TLRKNLDPFEK---YPDYVLWTALQEVE 453
D+ E ++R I I+ QD + T +NL + P + E+
Sbjct: 60 AGHDVVREP---REVRRRIGIVFQDLSVDDELTGWENLYIHARLYGVPGAERRERIDEL- 115
Query: 454 LKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATANVDPKTDLLI 513
++ GL +S G R+ + +AR++V +L LDE T +DP+T +
Sbjct: 116 -----LDFVGLLEAADRLVKTYSGGMRRRLEIARSLVHRPEVLFLDEPTIGLDPQTRAHV 170
Query: 514 QRTIRK--KFADCTVLTIAHRLHTI-MDSDKVLVMDSGVAV 551
I K + T+L H + D+V ++D G +
Sbjct: 171 WEYIEKLKEEFGMTILLTTHYMEEAEQLCDRVAIIDHGRII 211
>gnl|CDD|185037 PRK15079, PRK15079, oligopeptide ABC transporter ATP-binding
protein OppF; Provisional.
Length = 331
Score = 58.2 bits (141), Expect = 4e-09
Identities = 65/222 (29%), Positives = 107/222 (48%), Gaps = 40/222 (18%)
Query: 355 RVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAEV-EGVIKI---DDIDTEDVPLS 410
+ + + + ++ E +G+VG +G GKS+ AI L + +G + D + +D
Sbjct: 35 KAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKATDGEVAWLGKDLLGMKDDEWR 94
Query: 411 KLRSNISIIPQDPVLFSGTLRKNL-----DPFEKY-PDYVLWTALQEV--ELKDMIMEGA 462
+RS+I +I QDP L S R + +P Y P + QEV +K M+++
Sbjct: 95 AVRSDIQMIFQDP-LASLNPRMTIGEIIAEPLRTYHPK----LSRQEVKDRVKAMMLK-V 148
Query: 463 GL-----NMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATANVDPK-----TDLL 512
GL N +E FS GQ Q I +ARA++ +++ DE + +D +LL
Sbjct: 149 GLLPNLINRYPHE----FSGGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLL 204
Query: 513 --IQRTIRKKFADCTVLTIAHRLHTIMD-SDKVLVMDSGVAV 551
+QR + +++ IAH L + SD+VLVM G AV
Sbjct: 205 QQLQREM-----GLSLIFIAHDLAVVKHISDRVLVMYLGHAV 241
>gnl|CDD|182036 PRK09700, PRK09700, D-allose transporter ATP-binding protein;
Provisional.
Length = 510
Score = 58.6 bits (142), Expect = 5e-09
Identities = 53/218 (24%), Positives = 111/218 (50%), Gaps = 17/218 (7%)
Query: 349 RYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAE-VEGVIKIDDIDTEDV 407
+ +K++N+T++P E ++G GAGKS+L+ + + E +G I I++I+ +
Sbjct: 13 KSFGPVHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTITINNINYNKL 72
Query: 408 -PLSKLRSNISIIPQD-PVLFSGTLRKNL----DPFEKY--PDYVLWTALQEVELKDMIM 459
+ I II Q+ V+ T+ +NL +K + + W ++ M++
Sbjct: 73 DHKLAAQLGIGIIYQELSVIDELTVLENLYIGRHLTKKVCGVNIIDWREMRVR--AAMML 130
Query: 460 EGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATANV-DPKTDLL--IQRT 516
GL + + E N S+ +Q++ +A+ ++ + ++++DE T+++ + + D L I
Sbjct: 131 LRVGLKVDLDEKVANLSISHKQMLEIAKTLMLDAKVIIMDEPTSSLTNKEVDYLFLIMNQ 190
Query: 517 IRKKFADCTVLTIAHRLHTIMD-SDKVLVMDSGVAVVS 553
+RK+ ++ I+H+L I D+ VM G +V S
Sbjct: 191 LRKEGT--AIVYISHKLAEIRRICDRYTVMKDGSSVCS 226
>gnl|CDD|172741 PRK14253, PRK14253, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 249
Score = 56.8 bits (137), Expect = 6e-09
Identities = 52/217 (23%), Positives = 108/217 (49%), Gaps = 32/217 (14%)
Query: 338 LGKIEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAE-VEGV 396
+ K +N ++ Y + +K++N+ I ++ ++G +G GKS+L+ + R+ + +EGV
Sbjct: 1 MNKFNIENLDLFY-GENQALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGV 59
Query: 397 IKID---DIDTED----VPLSKLRSNISIIPQDPVLFSGTLRKNLD--------PFEKYP 441
KI +D ED + ++ LR + ++ Q P F ++ +N+ +K
Sbjct: 60 -KITGKLTMDGEDIYGNIDVADLRIKVGMVFQKPNPFPMSIYENVAYGLRAQGIKDKKVL 118
Query: 442 DYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEA 501
D V+ +L+ L D + + L S GQ+Q +C+AR I ++++DE
Sbjct: 119 DEVVERSLRGAALWDEVKDR--LKSH----AFGLSGGQQQRLCIARTIAMEPDVILMDEP 172
Query: 502 TANVDP----KTDLLIQRTIRKKFADCTVLTIAHRLH 534
T+ +DP K + L++ ++K + T++ + H +
Sbjct: 173 TSALDPIATHKIEELME-ELKKNY---TIVIVTHSMQ 205
>gnl|CDD|184587 PRK14241, PRK14241, phosphate transporter ATP-binding protein;
Provisional.
Length = 258
Score = 56.7 bits (137), Expect = 6e-09
Identities = 68/273 (24%), Positives = 125/273 (45%), Gaps = 50/273 (18%)
Query: 340 KIEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAE------V 393
+I+ ++ N+ Y S ++++N+ I P+ +G +G GKS+++ + R+ E V
Sbjct: 4 RIDVKDLNIYYGSF-HAVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARV 62
Query: 394 EGVIKID--DIDTEDVPLSKLRSNISIIPQDPVLF-SGTLRKNLDPFEKYPDYVLWTALQ 450
EG + +D D+ V +R I ++ Q P F + ++R N+ V L
Sbjct: 63 EGEVLLDGEDLYGPGVDPVAVRRTIGMVFQRPNPFPTMSIRDNV---------VAGLKLN 113
Query: 451 EV----ELKDMI---MEGAGLNMTVYE----GGTNFSVGQRQLICLARAIVRNNVILVLD 499
V +L +++ + GA L V + G S GQ+Q +C+ARAI +L++D
Sbjct: 114 GVRNKKDLDELVEKSLRGANLWNEVKDRLDKPGGGLSGGQQQRLCIARAIAVEPDVLLMD 173
Query: 500 EATANVDPKTDLLIQRTIRKKFADCTVLTIAHRLHTIMDSDKVLVMDSGVAVVSSFGFFF 559
E + +DP + L I+ I + D T++ + H + A VS FF
Sbjct: 174 EPCSALDPISTLAIEDLINELKQDYTIVIVTHNMQQ-------------AARVSDQTAFF 220
Query: 560 SKD-------LIEGTVSAKVLSSRKRREKEDRI 585
+ + L+E + K+ S+ ++ ED I
Sbjct: 221 NLEATGKPGRLVEIDDTEKIFSNPTQKATEDYI 253
>gnl|CDD|182342 PRK10261, PRK10261, glutathione transporter ATP-binding protein;
Provisional.
Length = 623
Score = 57.9 bits (140), Expect = 9e-09
Identities = 54/166 (32%), Positives = 77/166 (46%), Gaps = 26/166 (15%)
Query: 357 IKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAEV-EGVIKIDD--IDT-EDVPLSKL 412
++ ++ + P E + +VG +G+GKS+ A+ RL E G I + IDT L L
Sbjct: 340 VEKVSFDLWPGETLSLVGESGSGKSTTGRALLRLVESQGGEIIFNGQRIDTLSPGKLQAL 399
Query: 413 RSNISIIPQDP---------VLFS--GTLR-KNLDPFEKYPDYVLWTALQEVELKDMIME 460
R +I I QDP V S LR L P + V W L+ V L E
Sbjct: 400 RRDIQFIFQDPYASLDPRQTVGDSIMEPLRVHGLLPGKAAAARVAWL-LERVGLLP---E 455
Query: 461 GAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATANVD 506
A + FS GQRQ IC+ARA+ N +++ DEA + +D
Sbjct: 456 HA------WRYPHEFSGGQRQRICIARALALNPKVIIADEAVSALD 495
Score = 39.8 bits (93), Expect = 0.004
Identities = 52/234 (22%), Positives = 98/234 (41%), Gaps = 56/234 (23%)
Query: 357 IKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAEVEG----------------VIKID 400
++NL+ ++ E + IVG +G+GKS A+ RL E G VI++
Sbjct: 32 VRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLEQAGGLVQCDKMLLRRRSRQVIELS 91
Query: 401 DIDTEDVPLSKLR-SNISIIPQDPVLFSGTLRKNLDPFEKYPDYVLWTALQEVELKDMIM 459
+ + +R +++++I Q+P+ +L+P ++T +++ +
Sbjct: 92 E--QSAAQMRHVRGADMAMIFQEPM-------TSLNP--------VFTVGEQIAESIRLH 134
Query: 460 EGAGLNMTVYEGGT-------------------NFSVGQRQLICLARAIVRNNVILVLDE 500
+GA + E S G RQ + +A A+ +L+ DE
Sbjct: 135 QGASREEAMVEAKRMLDQVRIPEAQTILSRYPHQLSGGMRQRVMIAMALSCRPAVLIADE 194
Query: 501 ATANVDPKTDLLIQRTIR--KKFADCTVLTIAHRLHTIMD-SDKVLVMDSGVAV 551
T +D I + I+ +K V+ I H + + + +D+VLVM G AV
Sbjct: 195 PTTALDVTIQAQILQLIKVLQKEMSMGVIFITHDMGVVAEIADRVLVMYQGEAV 248
>gnl|CDD|172745 PRK14257, PRK14257, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 329
Score = 57.0 bits (137), Expect = 9e-09
Identities = 50/209 (23%), Positives = 98/209 (46%), Gaps = 23/209 (11%)
Query: 342 EFQNTNVRYLSGPR-VIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAEV------E 394
E +N N Y++ + V+ +LN+ I + +G +G GKS+ + + +L ++ E
Sbjct: 82 EIRNFNFWYMNRTKHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHE 141
Query: 395 GVIKIDDIDTEDVPLS--KLRSNISIIPQDPVLFSGTL--------RKNLDPFEKYPDYV 444
G I +T +S +LR+ I ++ Q P F ++ R N K + +
Sbjct: 142 GEIYFLGTNTRSKKISSLELRTRIGMVFQKPTPFEMSIFDNVAYGPRNNGINDRKILEKI 201
Query: 445 LWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATAN 504
+ +L+ L D + + + + G S GQ+Q +C+ARAI +L++DE T+
Sbjct: 202 VEKSLKSAALWDEVKD------DLDKAGNALSGGQQQRLCIARAIALEPEVLLMDEPTSA 255
Query: 505 VDPKTDLLIQRTIRKKFADCTVLTIAHRL 533
+DP I+ I + +++ + H +
Sbjct: 256 LDPIATAKIEELILELKKKYSIIIVTHSM 284
>gnl|CDD|172734 PRK14246, PRK14246, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 257
Score = 56.2 bits (135), Expect = 1e-08
Identities = 57/251 (22%), Positives = 113/251 (45%), Gaps = 32/251 (12%)
Query: 350 YLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAEV-EGVIKID------DI 402
Y++ ++K++ I I GI+G +G+GKS+L+ + RL E+ + IK+D
Sbjct: 19 YINDKAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYFGK 78
Query: 403 DTEDVPLSKLRSNISIIPQDPVLFSGTLRKNLDPFEKYPDYVLWTALQEV-ELKDMIMEG 461
D + KLR + ++ Q P F +L ++ + ++E E+K ++ E
Sbjct: 79 DIFQIDAIKLRKEVGMVFQQPNPFP-----HLSIYDNIAYPLKSHGIKEKREIKKIVEEC 133
Query: 462 ---AGLNMTVYE----GGTNFSVGQRQLICLARAIVRNNVILVLDEATANVDPKTDLLIQ 514
GL VY+ + S GQ+Q + +ARA+ +L++DE T+ +D I+
Sbjct: 134 LRKVGLWKEVYDRLNSPASQLSGGQQQRLTIARALALKPKVLLMDEPTSMIDIVNSQAIE 193
Query: 515 RTIRKKFADCTVLTIAHRLHTIMDSDKVLVMDSGVAVVSSFGFFFSKDLIEGTVSAKVLS 574
+ I + + ++ ++H + V F ++ +L+E S ++ +
Sbjct: 194 KLITELKNEIAIVIVSHNPQQV------------ARVADYVAFLYNGELVEWGSSNEIFT 241
Query: 575 SRKRREKEDRI 585
S K E +
Sbjct: 242 SPKNELTEKYV 252
>gnl|CDD|182331 PRK10247, PRK10247, putative ABC transporter ATP-binding protein
YbbL; Provisional.
Length = 225
Score = 55.5 bits (134), Expect = 1e-08
Identities = 54/206 (26%), Positives = 90/206 (43%), Gaps = 14/206 (6%)
Query: 347 NVRYLSGPRVI-KNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAE-VEGVIKIDDIDT 404
NV YL+G I N++ ++ E I G +G GKS+L+ + L G + + D
Sbjct: 12 NVGYLAGDAKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDI 71
Query: 405 EDVPLSKLRSNISIIPQDPVLFSGTLRKNLDPFEKYPDYVLWTALQEVELKDMIMEGAGL 464
+ R +S Q P LF T+ NL +P + D + L
Sbjct: 72 STLKPEIYRQQVSYCAQTPTLFGDTVYDNL----IFPWQIRNQQPDPAIFLDDLER-FAL 126
Query: 465 NMTVYEGGTN-FSVGQRQLICLARAIVRNNVILVLDEATANVDP--KTDL--LIQRTIRK 519
T+ S G++Q I L R + +L+LDE T+ +D K ++ +I R +R+
Sbjct: 127 PDTILTKNIAELSGGEKQRISLIRNLQFMPKVLLLDEITSALDESNKHNVNEIIHRYVRE 186
Query: 520 KFADCTVLTIAHRLHTIMDSDKVLVM 545
+ + VL + H I +DKV+ +
Sbjct: 187 Q--NIAVLWVTHDKDEINHADKVITL 210
>gnl|CDD|213265 cd03298, ABC_ThiQ_thiamine_transporter, ATP-binding cassette domain
of the thiamine transport system. Part of the
binding-protein-dependent transport system tbpA-thiPQ
for thiamine and TPP. Probably responsible for the
translocation of thiamine across the membrane. ABC
transporters are a large family of proteins involved in
the transport of a wide variety of different compounds,
like sugars, ions, peptides, and more complex organic
molecules. The nucleotide binding domain shows the
highest similarity between all members of the family.
ABC transporters are a subset of nucleotide hydrolases
that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing proteins.
Length = 211
Score = 55.2 bits (133), Expect = 1e-08
Identities = 54/198 (27%), Positives = 93/198 (46%), Gaps = 18/198 (9%)
Query: 360 LNITIHPKEKIGIVGRTGAGKSSLIAAI--FRLAEVEGVIKIDDIDTEDVPLSKLRSNIS 417
++T E IVG +G+GKS+L+ I F + G + I+ +D P + +S
Sbjct: 17 FDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQ-SGRVLINGVDVTAAPPA--DRPVS 73
Query: 418 IIPQDPVLFSG-TLRKNLDPFEKYPDYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFS 476
++ Q+ LF+ T+ +N+ P L TA + ++ + GL S
Sbjct: 74 MLFQENNLFAHLTVEQNVG-LGLSPGLKL-TAEDR-QAIEVALARVGLAGLEKRLPGELS 130
Query: 477 VGQRQLICLARAIVRNNVILVLDEATANVDPK-----TDLLIQRTIRKKFADCTVLTIAH 531
G+RQ + LAR +VR+ +L+LDE A +DP DL++ K TVL + H
Sbjct: 131 GGERQRVALARVLVRDKPVLLLDEPFAALDPALRAEMLDLVLDLHAETKM---TVLMVTH 187
Query: 532 RLHTIMD-SDKVLVMDSG 548
+ + +V+ +D+G
Sbjct: 188 QPEDAKRLAQRVVFLDNG 205
>gnl|CDD|237419 PRK13536, PRK13536, nodulation factor exporter subunit NodI;
Provisional.
Length = 340
Score = 56.4 bits (136), Expect = 1e-08
Identities = 58/223 (26%), Positives = 102/223 (45%), Gaps = 23/223 (10%)
Query: 341 IEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAEV-EGVIKI 399
I+ + Y V+ L+ T+ E G++G GAGKS++ I + G I +
Sbjct: 42 IDLAGVSKSY-GDKAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKITV 100
Query: 400 DDIDTEDVP--LSKLRSNISIIPQ-DPVLFSGTLRKNLDPFEKYPDYVLWTALQEVE-LK 455
VP R+ I ++PQ D + T+R+NL F +Y + +E+E +
Sbjct: 101 LG---VPVPARARLARARIGVVPQFDNLDLEFTVRENLLVFGRY----FGMSTREIEAVI 153
Query: 456 DMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATANVDPKTDLLIQR 515
++E A L ++ S G ++ + LARA++ + +L+LDE T +DP LI
Sbjct: 154 PSLLEFARLESKADARVSDLSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWE 213
Query: 516 TIRKKFADC-TVLTIAHRLHTIMDS-----DKVLVMDSGVAVV 552
+R A T+L H M+ D++ V+++G +
Sbjct: 214 RLRSLLARGKTILLTTH----FMEEAERLCDRLCVLEAGRKIA 252
>gnl|CDD|236689 PRK10419, nikE, nickel transporter ATP-binding protein NikE;
Provisional.
Length = 268
Score = 55.5 bits (134), Expect = 2e-08
Identities = 59/228 (25%), Positives = 104/228 (45%), Gaps = 53/228 (23%)
Query: 355 RVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAEVEGVIKID--DIDTEDVPLSKL 412
V+ N+++++ E + ++GR+G GKS+L RL + G+ ++ PL+KL
Sbjct: 26 TVLNNVSLSLKSGETVALLGRSGCGKSTLA----RL--LVGLESPSQGNVSWRGEPLAKL 79
Query: 413 --------RSNISIIPQDPV-----------LFSGTLRK--NLDPFEKYPDYVLWTALQE 451
R +I ++ QD + + LR +LD E+ L+
Sbjct: 80 NRAQRKAFRRDIQMVFQDSISAVNPRKTVREIIREPLRHLLSLDKAER--LARASEMLRA 137
Query: 452 VELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATANVDPKTDL 511
V+L D +++ + S GQ Q +CLARA+ +L+LDEA +N+ DL
Sbjct: 138 VDLDDSVLDKRPPQL---------SGGQLQRVCLARALAVEPKLLILDEAVSNL----DL 184
Query: 512 LIQRTI-------RKKFADCTVLTIAHRLHTIMD-SDKVLVMDSGVAV 551
++Q + +++F L I H L + +V+VMD+G V
Sbjct: 185 VLQAGVIRLLKKLQQQF-GTACLFITHDLRLVERFCQRVMVMDNGQIV 231
>gnl|CDD|172747 PRK14259, PRK14259, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 269
Score = 55.2 bits (133), Expect = 2e-08
Identities = 62/251 (24%), Positives = 116/251 (46%), Gaps = 44/251 (17%)
Query: 341 IEFQNTNVRYLSGPRVIKNLNITIHPKEKI-GIVGRTGAGKSSLIAAIFRLAEV------ 393
I QN + Y + V KN+ I P+ K+ ++G +G GKS+++ ++ R+ ++
Sbjct: 14 ISLQNVTISYGTFEAV-KNVFCDI-PRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSL 71
Query: 394 EGVIKIDDID--TEDVPLSKLRSNISIIPQDPVLFSGTLRKNL------DPFEKYPDYVL 445
+G + D D V ++R I ++ Q P F ++ +N+ + + D ++
Sbjct: 72 KGRVLFDGTDLYDPRVDPVEVRRRIGMVFQQPNPFPKSIYENIAFGARINGYTGDMDELV 131
Query: 446 WTALQEV----ELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEA 501
+L++ E KD LN E G + S GQ+Q +C+AR I ++++DE
Sbjct: 132 ERSLRKAAVWDECKDK------LN----ESGYSLSGGQQQRLCIARTIAIEPEVILMDEP 181
Query: 502 TANVDPKTDLLIQRTIRKKFADCTVLTIAHRLHTIMDSDKVLVMDSGVAVVSSFGFFFSK 561
+ +DP + L I+ T+ + + T++ + H M V VS FF+
Sbjct: 182 CSALDPISTLKIEETMHELKKNFTIVIVTHN------------MQQAVR-VSDMTAFFNA 228
Query: 562 DLIEGTVSAKV 572
+ +EG KV
Sbjct: 229 EEVEGGSGGKV 239
>gnl|CDD|237456 PRK13641, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 287
Score = 55.6 bits (134), Expect = 2e-08
Identities = 58/228 (25%), Positives = 101/228 (44%), Gaps = 29/228 (12%)
Query: 341 IEFQNTNVRYLSGPRVIK----NLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAE-VEG 395
I+F+N + Y G + K N++ + + +VG TG+GKS+L+ L + G
Sbjct: 3 IKFENVDYIYSPGTPMEKKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSG 62
Query: 396 VIKIDD----IDTEDVPLSKLRSNISIIPQDP--VLFSGTLRK-------NLDPFEKYPD 442
I I +T + L KLR +S++ Q P LF T+ K N E
Sbjct: 63 TITIAGYHITPETGNKNLKKLRKKVSLVFQFPEAQLFENTVLKDVEFGPKNFGFSEDEAK 122
Query: 443 YVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEAT 502
L++V L + ++ + + S GQ + + +A + IL LDE
Sbjct: 123 EKALKWLKKVGLSEDLISKSPFEL---------SGGQMRRVAIAGVMAYEPEILCLDEPA 173
Query: 503 ANVDPKTDL-LIQRTIRKKFADCTVLTIAHRLHTIMD-SDKVLVMDSG 548
A +DP+ ++Q + A TV+ + H + + + +D VLV++ G
Sbjct: 174 AGLDPEGRKEMMQLFKDYQKAGHTVILVTHNMDDVAEYADDVLVLEHG 221
>gnl|CDD|237421 PRK13539, PRK13539, cytochrome c biogenesis protein CcmA;
Provisional.
Length = 207
Score = 54.1 bits (131), Expect = 2e-08
Identities = 47/184 (25%), Positives = 80/184 (43%), Gaps = 29/184 (15%)
Query: 346 TNVRYLSGPRVI-KNLNITIHPKEKIGIVGRTGAGKSSL---IAAIFRLAEVEGVIKIDD 401
++ + G RV+ L+ T+ E + + G G+GK++L IA + A G IK+D
Sbjct: 6 EDLACVRGGRVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPA--AGTIKLDG 63
Query: 402 IDTEDVPLSKLRSNISII-PQD---PVLFSGTLRKNLDPFEKY---PDYVLWTALQEVEL 454
D+ + + ++ P L T+ +NL+ + + + + AL+ V L
Sbjct: 64 ---GDIDDPDVAEACHYLGHRNAMKPAL---TVAENLEFWAAFLGGEELDIAAALEAVGL 117
Query: 455 KDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATANVDPKTDLLIQ 514
+ G S GQ++ + LAR +V N I +LDE TA +D L
Sbjct: 118 APLAHLPFG----------YLSAGQKRRVALARLLVSNRPIWILDEPTAALDAAAVALFA 167
Query: 515 RTIR 518
IR
Sbjct: 168 ELIR 171
>gnl|CDD|130254 TIGR01186, proV, glycine betaine/L-proline transport ATP binding
subunit. This model describes the glycine
betaine/L-proline ATP binding subunit in bacteria and
its equivalents in archaea. This transport system belong
to the larger ATP-Binding Cassette (ABC) transporter
superfamily. The characteristic feature of these
transporter is the obligatory coupling of ATP hydrolysis
to substrate translocation. The minimal configuration of
bacterial ABC transport system: an ATPase or ATP binding
subunit; An integral membrane protein; a hydrophilic
polypetpide, which likely functions as substrate binding
protein. Functionally, this transport system is involved
in osmoregulation. Under conditions of stress, the
organism recruits these transport system to accumulate
glycine betaine and other solutes which offer
osmo-protection. It has been demonstrated that glycine
betaine uptake is accompanied by symport with sodium
ions. The locus has been named variously as proU or
opuA. A gene library from L.lactis functionally
complements an E.coli proU mutant. The comlementing
locus is similar to a opuA locus in B.sutlis. This
clarifies the differences in nomenclature [Transport and
binding proteins, Amino acids, peptides and amines].
Length = 363
Score = 55.6 bits (134), Expect = 3e-08
Identities = 53/212 (25%), Positives = 95/212 (44%), Gaps = 20/212 (9%)
Query: 353 GPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAE-VEGVIKIDDIDTEDVPLSK 411
G + + + ++ I E I+G +G+GKS+ + + RL E G I ID + +
Sbjct: 5 GKKGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQSPVE 64
Query: 412 L----RSNISIIPQDPVLFSGTLRKNLDPFEKYPDYVLWTALQEVELKDMIMEGAGLNMT 467
L R I ++ Q LF L P+ + W + E +++ GL
Sbjct: 65 LREVRRKKIGMVFQQFALFPH--MTILQNTSLGPELLGWPEQERKEKALELLKLVGLEEY 122
Query: 468 VYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATANVDP--KTDLL-----IQRTIRKK 520
+ S G +Q + LARA+ IL++DEA + +DP + + +Q T++K
Sbjct: 123 EHRYPDELSGGMQQRVGLARALAAEPDILLMDEAFSALDPLIRDSMQDELKKLQATLQK- 181
Query: 521 FADCTVLTIAHRLHTIMD-SDKVLVMDSGVAV 551
T++ I H L + D++++M +G V
Sbjct: 182 ----TIVFITHDLDEAIRIGDRIVIMKAGEIV 209
>gnl|CDD|172759 PRK14271, PRK14271, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 276
Score = 55.1 bits (132), Expect = 3e-08
Identities = 59/248 (23%), Positives = 104/248 (41%), Gaps = 39/248 (15%)
Query: 351 LSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAE-VEGVIKIDDI------- 402
+G V+ +++ + ++G TG+GK++ + + R+ + V G D+
Sbjct: 31 FAGKTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSI 90
Query: 403 -DTEDVPLSKLRSNISIIPQDPVLFSGTLRKN---------LDPFEKYPDYVLWTALQEV 452
+ DV + R + ++ Q P F ++ N L P +++ V L EV
Sbjct: 91 FNYRDV--LEFRRRVGMLFQRPNPFPMSIMDNVLAGVRAHKLVPRKEFRG-VAQARLTEV 147
Query: 453 ELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATANVDPKTDLL 512
L D + + + + S GQ+QL+CLAR + N +L+LDE T+ +DP T
Sbjct: 148 GLWDAVKD------RLSDSPFRLSGGQQQLLCLARTLAVNPEVLLLDEPTSALDPTTTEK 201
Query: 513 IQRTIRKKFADCTVLTIAHRLHTIMDSDKVLVMDSGVAVVSSFGFFFSKDLIEGTVSAKV 572
I+ IR TV+ + H L + FF L+E + ++
Sbjct: 202 IEEFIRSLADRLTVIIVTHNLA------------QAARISDRAALFFDGRLVEEGPTEQL 249
Query: 573 LSSRKRRE 580
SS K E
Sbjct: 250 FSSPKHAE 257
>gnl|CDD|236554 PRK09536, btuD, corrinoid ABC transporter ATPase; Reviewed.
Length = 402
Score = 55.6 bits (134), Expect = 3e-08
Identities = 45/173 (26%), Positives = 81/173 (46%), Gaps = 13/173 (7%)
Query: 351 LSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAI-FRLAEVEGVIKIDDIDTEDVPL 409
V+ +++++ +G+VG GAGK++L+ AI L G + + D E +
Sbjct: 13 FGDTTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEALSA 72
Query: 410 SKLRSNISIIPQDPVL-FSGTLRKNLDPFEKYPD---YVLWTALQEVELKDMIMEGAGLN 465
++ +PQD L F +R+ ++ + P + WT + + ME G+
Sbjct: 73 RAASRRVASVPQDTSLSFEFDVRQVVE-MGRTPHRSRFDTWTETDRAAV-ERAMERTGVA 130
Query: 466 MTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATANVDPKTDLLIQRTIR 518
T+ S G+RQ + LARA+ + +L+LDE TA++D I +R
Sbjct: 131 QFADRPVTSLSGGERQRVLLARALAQATPVLLLDEPTASLD------INHQVR 177
>gnl|CDD|130256 TIGR01188, drrA, daunorubicin resistance ABC transporter
ATP-binding subunit. This model describes daunorubicin
resistance ABC transporter, ATP binding subunit in
bacteria and archaea. This model is restricted in its
scope to preferentially recognize the ATP binding
subunit associated with effux of the drug, daunorubicin.
This transport system belong to the larger ATP-Binding
Cassette (ABC) transporter superfamily. The
characteristic feature of these transporter is the
obligatory coupling of ATP hydrolysis to substrate
translocation. The minimal configuration of bacterial
ABC transport system: an ATPase or ATP binding subunit;
An integral membrane protein; a hydrophilic polypetpide,
which likely functions as substrate binding protein. In
eukaryotes proteins of similar function include p-gyco
proteins, multidrug resistance protein etc [Transport
and binding proteins, Other].
Length = 302
Score = 55.1 bits (133), Expect = 3e-08
Identities = 49/210 (23%), Positives = 85/210 (40%), Gaps = 26/210 (12%)
Query: 355 RVIKNLNITIHPKEKIGIVGRTGAGKSSLI---AAIFRLAEVEGVIKIDDIDTEDVPLSK 411
+ + +N + E G +G GAGK++ I + R + D+ E K
Sbjct: 7 KAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVREP---RK 63
Query: 412 LRSNISIIPQDPVLFSG-TLRKNLDPFEKYPDYVLWTA-------LQEVELKDMIMEGAG 463
+R +I I+PQ + T R+NL+ + A L+ EL + G
Sbjct: 64 VRRSIGIVPQYASVDEDLTGRENLEMMGRLYGLPKDEAEERAEELLELFELGEAADRPVG 123
Query: 464 LNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATANVDPKTDLLIQRTIRK-KFA 522
+S G R+ + +A +++ +L LDE T +DP+T I IR K
Sbjct: 124 ----------TYSGGMRRRLDIAASLIHQPDVLFLDEPTTGLDPRTRRAIWDYIRALKEE 173
Query: 523 DCTVLTIAHRLHTI-MDSDKVLVMDSGVAV 551
T+L H + D++ ++D G +
Sbjct: 174 GVTILLTTHYMEEADKLCDRIAIIDHGRII 203
>gnl|CDD|181888 PRK09473, oppD, oligopeptide transporter ATP-binding component;
Provisional.
Length = 330
Score = 55.1 bits (133), Expect = 4e-08
Identities = 63/220 (28%), Positives = 103/220 (46%), Gaps = 41/220 (18%)
Query: 357 IKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAEVEGVI----KIDDIDTEDVP---L 409
+ +LN ++ E +GIVG +G+GKS A+ L G I + + ++P L
Sbjct: 32 VNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGREILNLPEKEL 91
Query: 410 SKLRS-NISIIPQDPVLFSGTLRKNLDPFEKYPDY---VLW--------TALQE-VELKD 456
+KLR+ IS+I QDP+ +L+P+ + + VL A +E V + D
Sbjct: 92 NKLRAEQISMIFQDPM-------TSLNPYMRVGEQLMEVLMLHKGMSKAEAFEESVRMLD 144
Query: 457 MI-MEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATANVDPKTDLLIQR 515
+ M A M +Y FS G RQ + +A A++ +L+ DE T + D+ +Q
Sbjct: 145 AVKMPEARKRMKMYP--HEFSGGMRQRVMIAMALLCRPKLLIADEPTTAL----DVTVQA 198
Query: 516 TIR------KKFADCTVLTIAHRLHTIMDS-DKVLVMDSG 548
I K+ + ++ I H L + DKVLVM +G
Sbjct: 199 QIMTLLNELKREFNTAIIMITHDLGVVAGICDKVLVMYAG 238
>gnl|CDD|183044 PRK11231, fecE, iron-dicitrate transporter ATP-binding subunit;
Provisional.
Length = 255
Score = 53.9 bits (130), Expect = 5e-08
Identities = 44/183 (24%), Positives = 86/183 (46%), Gaps = 4/183 (2%)
Query: 355 RVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFR-LAEVEGVIKIDDIDTEDVPLSKLR 413
R++ +L++++ + ++G G GKS+L+ R L G + + D + +L
Sbjct: 16 RILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPISMLSSRQLA 75
Query: 414 SNISIIPQDPVLFSGTLRKNLDPFEKYPDYVLWTAL--QEVELKDMIMEGAGLNMTVYEG 471
++++PQ + G + L + + P LW L ++ + ME +N
Sbjct: 76 RRLALLPQHHLTPEGITVRELVAYGRSPWLSLWGRLSAEDNARVNQAMEQTRINHLADRR 135
Query: 472 GTNFSVGQRQLICLARAIVRNNVILVLDEATANVDPKTDLLIQRTIRK-KFADCTVLTIA 530
T+ S GQRQ LA + ++ +++LDE T +D + + R +R+ TV+T+
Sbjct: 136 LTDLSGGQRQRAFLAMVLAQDTPVVLLDEPTTYLDINHQVELMRLMRELNTQGKTVVTVL 195
Query: 531 HRL 533
H L
Sbjct: 196 HDL 198
>gnl|CDD|237451 PRK13631, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 320
Score = 54.1 bits (130), Expect = 7e-08
Identities = 60/237 (25%), Positives = 108/237 (45%), Gaps = 29/237 (12%)
Query: 356 VIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAEVE-GVIKIDDI---------DTE 405
+ N++ T + I+G +G+GKS+L+ L + + G I++ DI +
Sbjct: 41 ALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKYGTIQVGDIYIGDKKNNHELI 100
Query: 406 DVPLSK-------LRSNISIIPQDP--VLFSGTLRKNLDPFEKYPDYVLWTALQEV-ELK 455
P SK LR +S++ Q P LF T+ K++ + L E +L
Sbjct: 101 TNPYSKKIKNFKELRRRVSMVFQFPEYQLFKDTIEKDI----MFGPVALGVKKSEAKKLA 156
Query: 456 DMIMEGAGLNMTVYEGGT-NFSVGQRQLICLARAIVRNNVILVLDEATANVDPKTDLLIQ 514
+ GL+ + E S GQ++ + +A + IL+ DE TA +DPK + +
Sbjct: 157 KFYLNKMGLDDSYLERSPFGLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMM 216
Query: 515 RTIRK-KFADCTVLTIAHRLHTIMD-SDKVLVMDSGVAVVSS--FGFFFSKDLIEGT 567
+ I K + TV I H + +++ +D+V+VMD G + + + F + +I T
Sbjct: 217 QLILDAKANNKTVFVITHTMEHVLEVADEVIVMDKGKILKTGTPYEIFTDQHIINST 273
>gnl|CDD|226620 COG4136, COG4136, ABC-type uncharacterized transport system, ATPase
component [General function prediction only].
Length = 213
Score = 52.9 bits (127), Expect = 7e-08
Identities = 41/171 (23%), Positives = 74/171 (43%), Gaps = 31/171 (18%)
Query: 351 LSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIA-AIFRLA---EVEGVIKIDDIDTED 406
L G ++ N+N TI E + ++G +G GKS+L++ I LA G + +++ +
Sbjct: 12 LPGSCLLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLDM 71
Query: 407 VPLSKLRSNISIIPQDPVLFSGTLRKNLDPFEKYPDYVLWTAL-----------QEVELK 455
+P + + I I+ QD +LF P + L
Sbjct: 72 LPAA--QRQIGILFQDALLF--------------PHLSVGQNLLFALPATLKGNARRNAA 115
Query: 456 DMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATANVD 506
+ +E +GL+ ++ S GQR + L RA++ L+LDE + +D
Sbjct: 116 NAALERSGLDGAFHQDPATLSGGQRARVALLRALLAQPKALLLDEPFSRLD 166
>gnl|CDD|172751 PRK14263, PRK14263, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 261
Score = 53.5 bits (128), Expect = 7e-08
Identities = 53/225 (23%), Positives = 103/225 (45%), Gaps = 33/225 (14%)
Query: 357 IKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAEV------EGVIKI--DDIDTEDVP 408
+++ ++ I E G +G +G GKS+++ ++ R+ ++ EG + D+ + V
Sbjct: 24 VRDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDVYGKGVD 83
Query: 409 LSKLRSNISIIPQDPVLFSGTLRKN------LDPFEKYPDYVLWTALQEVELKDMIMEGA 462
+R I ++ Q P FS ++ N L+ ++ + ALQ L D + +
Sbjct: 84 PVVVRRYIGMVFQQPNPFSMSIFDNVAFGLRLNRYKGDLGDRVKHALQGAALWDEVKD-- 141
Query: 463 GLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATANVDPKTDLLIQRTIRKKFA 522
+ G + S GQ+Q +C+ARAI +L+LDE + +DP ++ + +
Sbjct: 142 ----KLKVSGLSLSGGQQQRLCIARAIATEPEVLLLDEPCSALDPIATRRVEELMVELKK 197
Query: 523 DCTVLTIAHRLHTIMDSDKVLVMDSGVAVVSSFGFFFSKDLIEGT 567
D T+ + H + + VA ++ FFS D+ +GT
Sbjct: 198 DYTIALVTHNMQQAIR----------VADTTA---FFSVDISQGT 229
>gnl|CDD|184199 PRK13639, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 275
Score = 53.5 bits (129), Expect = 9e-08
Identities = 48/180 (26%), Positives = 85/180 (47%), Gaps = 24/180 (13%)
Query: 341 IEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSL---IAAIFRLAEVEGVI 397
+E ++ Y G +K +N E + ++G GAGKS+L I + E +I
Sbjct: 2 LETRDLKYSYPDGTEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEVLI 61
Query: 398 KIDDIDTEDVPLSKLRSNISIIPQDP--VLFSGTLRKNLDPFEKYPDYVLWTALQEVE-- 453
K + I + L ++R + I+ Q+P LF+ T+ +++ + L + +EVE
Sbjct: 62 KGEPIKYDKKSLLEVRKTVGIVFQNPDDQLFAPTVEEDV----AFGPLNLGLSKEEVEKR 117
Query: 454 ----LKDMIMEGAGLNMTVYEGGT--NFSVGQRQLICLARAIVRNNVILVLDEATANVDP 507
LK + MEG +E + S GQ++ + +A + I+VLDE T+ +DP
Sbjct: 118 VKEALKAVGMEG-------FENKPPHHLSGGQKKRVAIAGILAMKPEIIVLDEPTSGLDP 170
>gnl|CDD|233206 TIGR00954, 3a01203, Peroxysomal Fatty Acyl CoA Transporter (FAT)
Family protei. [Transport and binding proteins,
Carbohydrates, organic alcohols, and acids].
Length = 659
Score = 54.8 bits (132), Expect = 9e-08
Identities = 54/235 (22%), Positives = 91/235 (38%), Gaps = 31/235 (13%)
Query: 311 RLVEYTKLEPEGNLSPNYEDENEIWPVLGKIEFQNTNVRYLSGPRVIKNLNITIHPKEKI 370
R+ E G S + I+F+N + +G +I++L+ + +
Sbjct: 422 RVEEIESGREGGRNSNLVPGRGIVEYQDNGIKFENIPLVTPNGDVLIESLSFEVPSGNNL 481
Query: 371 GIVGRTGAGKSSLIAAIFR-LAEV----EGVIKIDDIDTEDVPLSKLRSNISIIPQDPVL 425
I G G GKSSL FR L E+ G + + + +PQ P +
Sbjct: 482 LICGPNGCGKSSL----FRILGELWPVYGGRLTKPA-----------KGKLFYVPQRPYM 526
Query: 426 FSGTLRKNL-------DPFEK-YPDYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSV 477
GTLR + D + D L L V+L ++ G + V + S
Sbjct: 527 TLGTLRDQIIYPDSSEDMKRRGLSDKDLEQILDNVQLTHILEREGGWS-AVQDWMDVLSG 585
Query: 478 GQRQLICLARAIVRNNVILVLDEATANVDPKTDLLIQRTIRKKFADCTVLTIAHR 532
G++Q I +AR +LDE T+ V + + R R+ T+ +++HR
Sbjct: 586 GEKQRIAMARLFYHKPQFAILDECTSAVSVDVEGYMYRLCRE--FGITLFSVSHR 638
>gnl|CDD|183063 PRK11264, PRK11264, putative amino-acid ABC transporter ATP-binding
protein YecC; Provisional.
Length = 250
Score = 52.8 bits (127), Expect = 1e-07
Identities = 59/217 (27%), Positives = 104/217 (47%), Gaps = 16/217 (7%)
Query: 348 VRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAEVE-GVIKIDDIDTE- 405
V+ G V+ +++ + P E + I+G +G+GK++L+ I L + E G I++ DI +
Sbjct: 10 VKKFHGQTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIDT 69
Query: 406 DVPLSK-------LRSNISIIPQDPVLFSGTLRKNLDPFEKYPDYVLWTALQE-VELKDM 457
LS+ LR ++ + Q+ LF R L+ + P V +E
Sbjct: 70 ARSLSQQKGLIRQLRQHVGFVFQNFNLFPH--RTVLENIIEGPVIVKGEPKEEATARARE 127
Query: 458 IMEGAGLNMTVYEGGTNFSVGQRQLICLARAI-VRNNVILVLDEATANVDPKTDLLIQRT 516
++ GL S GQ+Q + +ARA+ +R VIL DE T+ +DP+ + T
Sbjct: 128 LLAKVGLAGKETSYPRRLSGGQQQRVAIARALAMRPEVIL-FDEPTSALDPELVGEVLNT 186
Query: 517 IRKKFADC-TVLTIAHRLHTIMD-SDKVLVMDSGVAV 551
IR+ + T++ + H + D +D+ + MD G V
Sbjct: 187 IRQLAQEKRTMVIVTHEMSFARDVADRAIFMDQGRIV 223
>gnl|CDD|226617 COG4133, CcmA, ABC-type transport system involved in cytochrome c
biogenesis, ATPase component [Posttranslational
modification, protein turnover, chaperones].
Length = 209
Score = 52.3 bits (126), Expect = 1e-07
Identities = 33/156 (21%), Positives = 61/156 (39%), Gaps = 17/156 (10%)
Query: 359 NLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAE-VEGVIKIDDIDTEDVPLSKLRSNIS 417
+L+ T++ E + I G GAGK++L+ + L G + ++V +
Sbjct: 20 DLSFTLNAGEALQITGPNGAGKTTLLRILAGLLRPDAGEVYWQGEPIQNVR-ESYHQALL 78
Query: 418 IIPQDPVLFSG-TLRKNL----DPFEKYPDYVLWTALQEVELKDMIMEGAGLNMTVYEGG 472
+ P + + T +NL +W AL +V L + G
Sbjct: 79 YLGHQPGIKTELTALENLHFWQRFHGSGNAATIWEALAQVGLAGLEDLPVG--------- 129
Query: 473 TNFSVGQRQLICLARAIVRNNVILVLDEATANVDPK 508
S GQ++ + LAR + + +LDE +D +
Sbjct: 130 -QLSAGQQRRVALARLWLSPAPLWILDEPFTALDKE 164
>gnl|CDD|184134 PRK13549, PRK13549, xylose transporter ATP-binding subunit;
Provisional.
Length = 506
Score = 54.2 bits (131), Expect = 1e-07
Identities = 54/224 (24%), Positives = 100/224 (44%), Gaps = 47/224 (20%)
Query: 352 SGPRVIKNLNITIHPKEKIGIVGRTGAGKSSL---IAAIFRLAEVEGVIKIDDI------ 402
G + + N+++ + E + + G GAGKS+L ++ ++ EG I +
Sbjct: 16 GGVKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEIIFEGEELQASN 75
Query: 403 --DTEDVPLSKLRSNISIIPQDPVLFSGTLRKNLDPFE-----------KYPDYVLWTAL 449
DTE R+ I+II Q+ L K L E DY
Sbjct: 76 IRDTE-------RAGIAIIHQEL-----ALVKELSVLENIFLGNEITPGGIMDY------ 117
Query: 450 QEVELK-DMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATANV-DP 507
+ L+ ++ L++ N +GQ+QL+ +A+A+ + +L+LDE TA++ +
Sbjct: 118 DAMYLRAQKLLAQLKLDINPATPVGNLGLGQQQLVEIAKALNKQARLLILDEPTASLTES 177
Query: 508 KTDLL--IQRTIRKKFADCTVLTIAHRLHTIMD-SDKVLVMDSG 548
+T +L I R ++ C + I+H+L+ + SD + V+ G
Sbjct: 178 ETAVLLDIIRDLKAHGIAC--IYISHKLNEVKAISDTICVIRDG 219
Score = 40.7 bits (96), Expect = 0.002
Identities = 55/219 (25%), Positives = 100/219 (45%), Gaps = 38/219 (17%)
Query: 355 RVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRL--AEVEGVIKID----DIDTEDVP 408
+ + +++ ++ E +GI G GAG++ L+ +F EG I ID I P
Sbjct: 276 KRVDDVSFSLRRGEILGIAGLVGAGRTELVQCLFGAYPGRWEGEIFIDGKPVKIRN---P 332
Query: 409 LSKLRSNISIIPQD-------PVLFSG---TLRKNLDPFEKYPDYVLWTALQ----EVEL 454
+ I+++P+D PV+ G TL LD F + A + +
Sbjct: 333 QQAIAQGIAMVPEDRKRDGIVPVMGVGKNITL-AALDRFTGGS--RIDDAAELKTILESI 389
Query: 455 KDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATANVD--PKTDL- 511
+ + ++ A + + S G +Q LA+ ++ N IL+LDE T +D K ++
Sbjct: 390 QRLKVKTASPELAI----ARLSGGNQQKAVLAKCLLLNPKILILDEPTRGIDVGAKYEIY 445
Query: 512 -LIQRTIRKKFADCTVLTIAHRLHTIMD-SDKVLVMDSG 548
LI + +++ A ++ I+ L ++ SD+VLVM G
Sbjct: 446 KLINQLVQQGVA---IIVISSELPEVLGLSDRVLVMHEG 481
>gnl|CDD|182221 PRK10070, PRK10070, glycine betaine transporter ATP-binding
subunit; Provisional.
Length = 400
Score = 53.5 bits (128), Expect = 2e-07
Identities = 57/212 (26%), Positives = 98/212 (46%), Gaps = 28/212 (13%)
Query: 357 IKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAE-VEGVIKIDDIDTEDVPLSKLR-- 413
+K+ ++ I E I+G +G+GKS+++ + RL E G + ID +D + ++LR
Sbjct: 44 VKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIAKISDAELREV 103
Query: 414 ---------SNISIIPQDPVLFSGTLRKNLD--PFEKYPDYVLWTALQEVELKDMIMEGA 462
+ +++P VL + L E+ + L AL++V
Sbjct: 104 RRKKIAMVFQSFALMPHMTVLDNTAFGMELAGINAEERREKAL-DALRQV---------- 152
Query: 463 GLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATANVDPKTDLLIQRTIRKKFA 522
GL + S G RQ + LARA+ N IL++DEA + +DP +Q + K A
Sbjct: 153 GLENYAHSYPDELSGGMRQRVGLARALAINPDILLMDEAFSALDPLIRTEMQDELVKLQA 212
Query: 523 DC--TVLTIAHRLHTIMD-SDKVLVMDSGVAV 551
T++ I+H L M D++ +M +G V
Sbjct: 213 KHQRTIVFISHDLDEAMRIGDRIAIMQNGEVV 244
>gnl|CDD|237422 PRK13548, hmuV, hemin importer ATP-binding subunit; Provisional.
Length = 258
Score = 52.5 bits (127), Expect = 2e-07
Identities = 52/230 (22%), Positives = 99/230 (43%), Gaps = 37/230 (16%)
Query: 341 IEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIF-RLAEVEGVIKI 399
+E +N +VR L G ++ ++++T+ P E + I+G GAGKS+L+ A+ L+ G +++
Sbjct: 3 LEARNLSVR-LGGRTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEVRL 61
Query: 400 DDIDTEDVPLSKLRSNISIIPQDPVL-FSGTLRKNLDPFE--------KYPDYVLWTALQ 450
+ D ++L +++PQ L F PF + P +
Sbjct: 62 NGRPLADWSPAELARRRAVLPQHSSLSF---------PFTVEEVVAMGRAPHGLSRAEDD 112
Query: 451 EVELKDMIMEGAGLNMTVYEGG--TNFSVGQRQLICLARAIVR------NNVILVLDEAT 502
L + L G S G++Q + LAR + + L+LDE T
Sbjct: 113 --ALVAAALAQVDL--AHLAGRDYPQLSGGEQQRVQLARVLAQLWEPDGPPRWLLLDEPT 168
Query: 503 ANVDPKTDLLIQRTIRKKFAD---CTVLTIAHRLH-TIMDSDKVLVMDSG 548
+ +D + R R + A V+ + H L+ +D+++++ G
Sbjct: 169 SALDLAHQHHVLRLAR-QLAHERGLAVIVVLHDLNLAARYADRIVLLHQG 217
>gnl|CDD|163483 TIGR03771, anch_rpt_ABC, anchored repeat-type ABC transporter,
ATP-binding subunit. This protein family is the
ATP-binding cassette subunit of binding
protein-dependent ABC transporter complex that strictly
co-occurs with TIGR03769. TIGRFAMs model TIGR03769
describes a protein domain that occurs singly or as one
of up to three repeats in proteins of a number of
Actinobacteria, including Propionibacterium acnes
KPA171202. The TIGR03769 domain occurs both in an
adjacent gene for the substrate-binding protein and in
additional (often nearby) proteins, often with
LPXTG-like sortase recognition signals. Homologous
ATP-binding subunits outside the scope of this family
include manganese transporter MntA in Synechocystis sp.
PCC 6803 and chelated iron transporter subunits. The
function of this transporter complex is unknown
[Transport and binding proteins, Unknown substrate].
Length = 223
Score = 51.8 bits (124), Expect = 2e-07
Identities = 52/205 (25%), Positives = 90/205 (43%), Gaps = 32/205 (15%)
Query: 362 ITIHPKEKIGIVGRTGAGKSSLIAAIFRLAEV-EGVIKIDDIDTEDVPLSKLRSNISIIP 420
++ E +G++G GAGK++L+ AI L +G +K+ K +I +P
Sbjct: 1 LSADKGELLGLLGPNGAGKTTLLRAILGLIPPAKGTVKVAG-----ASPGKGWRHIGYVP 55
Query: 421 QD-------PVLFSGTL---RKNLDPFEKYPDYVLWTA----LQEVELKDMIMEGAGLNM 466
Q P+ + T+ R + + P + A L+ V L ++ +
Sbjct: 56 QRHEFAWDFPISVAHTVMSGRTGHIGWLRRPCVADFAAVRDALRRVGLTEL------ADR 109
Query: 467 TVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATANVD-PKTDLLIQRTIRKKFADCT 525
V E S GQRQ + +ARA+ +L+LDE +D P +LL + I A
Sbjct: 110 PVGE----LSGGQRQRVLVARALATRPSVLLLDEPFTGLDMPTQELLTELFIELAGAGTA 165
Query: 526 VLTIAHRLHTIMDS-DKVLVMDSGV 549
+L H L M + D+V++++ V
Sbjct: 166 ILMTTHDLAQAMATCDRVVLLNGRV 190
>gnl|CDD|172761 PRK14273, PRK14273, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 254
Score = 52.3 bits (125), Expect = 2e-07
Identities = 49/205 (23%), Positives = 96/205 (46%), Gaps = 13/205 (6%)
Query: 341 IEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAEVEGVIKID 400
IE +N N+ Y + + + N+NI I ++G +G GKS+ + + R+ ++ IKI+
Sbjct: 8 IETENLNLFY-TDFKALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIE 66
Query: 401 --------DIDTEDVPLSKLRSNISIIPQDPVLFSGTLRKNLDPFEKYPDYVLWTALQEV 452
+I + + + +LR I ++ Q P F ++ N+ K L E+
Sbjct: 67 GNVIYEGKNIYSNNFDILELRRKIGMVFQTPNPFLMSIYDNISYGPKIHGTKDKKKLDEI 126
Query: 453 ELKDMIMEGAGLNMTVYEGGTN---FSVGQRQLICLARAIVRNNVILVLDEATANVDPKT 509
+ + + A N + TN S GQ+Q +C+AR + ++++DE T+ +DP +
Sbjct: 127 VEQSLK-KSALWNEVKDKLNTNALSLSGGQQQRLCIARTLAIEPNVILMDEPTSALDPIS 185
Query: 510 DLLIQRTIRKKFADCTVLTIAHRLH 534
I+ I T++ + H +
Sbjct: 186 TGKIEELIINLKESYTIIIVTHNMQ 210
>gnl|CDD|132561 TIGR03522, GldA_ABC_ATP, gliding motility-associated ABC
transporter ATP-binding subunit GldA. Members of this
protein family are exclusive to the Bacteroidetes phylum
(previously Cytophaga-Flavobacteria-Bacteroides). GldA
is an ABC transporter ATP-binding protein (pfam00005)
linked to a type of rapid surface gliding motility found
in certain Bacteroidetes, such as Flavobacterium
johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA
abolish the gliding phenotype. Gliding motility appears
closely linked to chitin utilization in the model
species Flavobacterium johnsoniae. Bacteroidetes with
members of this protein family appear to have all of the
genes associated with gliding motility.
Length = 301
Score = 52.5 bits (126), Expect = 2e-07
Identities = 51/215 (23%), Positives = 88/215 (40%), Gaps = 35/215 (16%)
Query: 356 VIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIF-RLAEVEGVIKIDDIDTEDVPLSKLRS 414
+ ++ +G +G GAGKS+ + I L G +++ D P +++
Sbjct: 17 ALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPDSGSVQVCGEDVLQNPK-EVQR 75
Query: 415 NISIIPQDPVL-----------FSGTLRKNLDPFEKYPDYVLWTALQEVELKDMIMEGAG 463
NI +P+ L F + K Q VE +MI E G
Sbjct: 76 NIGYLPEHNPLYLDMYVREYLQFIAGIYGMKGQLLK----------QRVE--EMI-ELVG 122
Query: 464 LNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATANVDPKTDLLIQRTIRKKFAD 523
L ++ S G RQ + LA+A++ + +L+LDE T +DP + I+ I+ D
Sbjct: 123 LRPEQHKKIGQLSKGYRQRVGLAQALIHDPKVLILDEPTTGLDPNQLVEIRNVIKNIGKD 182
Query: 524 CTVLTIAHRLHTIMDS-----DKVLVMDSGVAVVS 553
T++ H IM D+V++++ G V
Sbjct: 183 KTIILSTH----IMQEVEAICDRVIIINKGKIVAD 213
>gnl|CDD|213264 cd03297, ABC_ModC_molybdenum_transporter, ATP-binding cassette
domain of the molybdenum transport system. ModC is an
ABC-type transporter and the ATPase component of a
molybdate transport system that also includes the
periplasmic binding protein ModA and the membrane
protein ModB. ABC transporters are a large family of
proteins involved in the transport of a wide variety of
different compounds, like sugars, ions, peptides and
more complex organic molecules. The nucleotide binding
domain shows the highest similarity between all members
of the family. ABC transporters are a subset of
nucleotide hydrolases that contain a signature motif,
Q-loop, and H-loop/switch region, in addition to, the
Walker A motif/P-loop and Walker B motif commonly found
in a number of ATP- and GTP-binding and hydrolyzing
proteins.
Length = 214
Score = 51.1 bits (123), Expect = 3e-07
Identities = 50/194 (25%), Positives = 90/194 (46%), Gaps = 18/194 (9%)
Query: 366 PKEKIGIVGRTGAGKSSLIAAIFRLAEVE-GVIKIDD---IDTE-DVPLSKLRSNISIIP 420
+E GI G +GAGKS+L+ I L + + G I ++ D+ + L + I ++
Sbjct: 22 NEEVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLFDSRKKINLPPQQRKIGLVF 81
Query: 421 QDPVLFSG-TLRKNLDPFEKYPDYVLWTALQEVELK--DMIMEGAGLNMTVYEGGTNFSV 477
Q LF +R+NL + L + D +++ GL+ + S
Sbjct: 82 QQYALFPHLNVRENLA-------FGLKRKRNREDRISVDELLDLLGLDHLLNRYPAQLSG 134
Query: 478 GQRQLICLARAIVRNNVILVLDEATANVDP--KTDLLIQRTIRKKFADCTVLTIAHRLHT 535
G++Q + LARA+ +L+LDE + +D + LL + KK + V+ + H L
Sbjct: 135 GEKQRVALARALAAQPELLLLDEPFSALDRALRLQLLPELKQIKKNLNIPVIFVTHDLSE 194
Query: 536 I-MDSDKVLVMDSG 548
+D+++VM+ G
Sbjct: 195 AEYLADRIVVMEDG 208
>gnl|CDD|131266 TIGR02211, LolD_lipo_ex, lipoprotein releasing system, ATP-binding
protein. This model represents LolD, a member of the
ABC transporter family (pfam00005). LolD is involved in
localization of lipoproteins in some bacteria. It works
with a transmembrane protein LolC, which in some species
is a paralogous pair LolC and LolE. Depending on whether
the residue immediately following the new, modified
N-terminal Cys residue, the nascent lipoprotein may be
carried further by LolA and LolB to the outer membrane,
or remain at the inner membrane. The top scoring
proteins excluded by this model include homologs from
the archaeal genus Methanosarcina [Protein fate, Protein
and peptide secretion and trafficking].
Length = 221
Score = 51.2 bits (123), Expect = 3e-07
Identities = 62/237 (26%), Positives = 100/237 (42%), Gaps = 50/237 (21%)
Query: 341 IEFQNTNVRYLSGP---RVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAE-VEGV 396
++ +N RY G RV+K ++++I E + IVG +G+GKS+L+ + L G
Sbjct: 2 LKCENLGKRYQEGKLDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSG- 60
Query: 397 IKIDDIDTEDVPLSKLRSNISIIPQDPVLFSGTLR-KNLDPFEKY----PDYVLWTALQE 451
++ LSKL SN LR K L ++ PD+ TAL+
Sbjct: 61 ----EVLFNGQSLSKLSSNE----------RAKLRNKKLGFIYQFHHLLPDF---TALEN 103
Query: 452 V---------------ELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVIL 496
V E ++E GL + + S G+RQ + +ARA+V ++
Sbjct: 104 VAMPLLIGKKSVKEAKERAYEMLEKVGLEHRINHRPSELSGGERQRVAIARALVNQPSLV 163
Query: 497 VLDEATANVDPKT-----DLLIQRTIRKKFADCTVLTIAHRLHTIMDSDKVLVMDSG 548
+ DE T N+D DL+++ + L + H L D+VL M G
Sbjct: 164 LADEPTGNLDNNNAKIIFDLMLELNRELNTS---FLVVTHDLELAKKLDRVLEMKDG 217
>gnl|CDD|172749 PRK14261, PRK14261, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 253
Score = 51.4 bits (123), Expect = 3e-07
Identities = 55/251 (21%), Positives = 98/251 (39%), Gaps = 55/251 (21%)
Query: 341 IEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRL------AEVE 394
+ +N N+ Y + ++ I+I ++G +G GKS+L+ R+ +
Sbjct: 7 LSTKNLNLWYGE-KHALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRIT 65
Query: 395 GVIKIDDIDTEDVPLS--KLRSNISIIPQDPVLFSGTL---------------RKNLDPF 437
G I + + D LR I ++ Q P F ++ +K LD
Sbjct: 66 GDILYNGENIMDSGADVVALRRKIGMVFQRPNPFPKSIYENVAYGPRIHGEKNKKTLDTI 125
Query: 438 --EKYPDYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVI 495
+ LW E+KD + + A + S GQ+Q +C+AR + N +
Sbjct: 126 VEKSLKGAALWD-----EVKDRLHDSA----------LSLSGGQQQRLCIARTLAVNPEV 170
Query: 496 LVLDEATANVDPKTDLLIQRTIRKKFADCTVLTIAHRLHTIMDSDKVLVMDSGVAVVSSF 555
+++DE + +DP I+ I + TV+ + H + A VS +
Sbjct: 171 ILMDEPCSALDPIATAKIEDLIEDLKKEYTVIIVTHNM-------------QQAARVSDY 217
Query: 556 -GFFFSKDLIE 565
GF + LIE
Sbjct: 218 TGFMYLGKLIE 228
>gnl|CDD|226639 COG4170, SapD, ABC-type antimicrobial peptide transport system,
ATPase component [Defense mechanisms].
Length = 330
Score = 51.8 bits (124), Expect = 4e-07
Identities = 61/251 (24%), Positives = 108/251 (43%), Gaps = 57/251 (22%)
Query: 341 IEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAEVEGVI--- 397
IEF+ + + + +++T++ E G+VG +G+GKS + AI + + +
Sbjct: 11 IEFKTSQGWV----KAVDRVSMTLNEGEIRGLVGESGSGKSLIAKAICGVNKDNWRVTAD 66
Query: 398 --KIDDIDTEDVPLSKLRS----NISIIPQDPVLFSGTLRKNLDPFEKYPDYVL-----W 446
+ DDID + + R N+S+I Q+P + LDP E+ ++ W
Sbjct: 67 RMRFDDIDLLRLSPRERRKLVGHNVSMIFQEP-------QSCLDPSERVGRQLIQNIPAW 119
Query: 447 T------------------ALQEVELKDM--IMEGAGLNMTVYEGGTNFSVGQRQLICLA 486
T L V +KD IM +T E Q + +A
Sbjct: 120 TYKGRWWQRFGWRKRRAIELLHRVGIKDHKDIMRSYPYELTEGEC---------QKVMIA 170
Query: 487 RAIVRNNVILVLDEATANVDPKTDLLIQRTIRK--KFADCTVLTIAHRLHTIMD-SDKVL 543
A+ +L+ DE T +++P T I R + + + ++ T+L I+H L I +DK+
Sbjct: 171 IALANQPRLLIADEPTNSMEPTTQAQIFRLLSRLNQNSNTTILLISHDLQMISQWADKIN 230
Query: 544 VMDSGVAVVSS 554
V+ G V S+
Sbjct: 231 VLYCGQTVESA 241
>gnl|CDD|213267 cd03300, ABC_PotA_N, ATP-binding cassette domain of the polyamine
transporter. PotA is an ABC-type transporter and the
ATPase component of the
spermidine/putrescine-preferential uptake system
consisting of PotA, -B, -C, and -D. PotA has two domains
with the N-terminal domain containing the ATPase
activity and the residues required for homodimerization
with PotA and heterdimerization with PotB. ABC
transporters are a large family of proteins involved in
the transport of a wide variety of different compounds,
like sugars, ions, peptides, and more complex organic
molecules. The nucleotide binding domain shows the
highest similarity between all members of the family.
ABC transporters are a subset of nucleotide hydrolases
that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing proteins.
Length = 232
Score = 50.7 bits (122), Expect = 5e-07
Identities = 54/220 (24%), Positives = 99/220 (45%), Gaps = 25/220 (11%)
Query: 341 IEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAEV-EGVIKI 399
IE +N + Y G + +++ I E ++G +G GK++L+ I G I +
Sbjct: 1 IELENVSKFY-GGFVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEILL 59
Query: 400 DDIDTEDVPLSKLRSNISIIPQDPVLFSGTLRKNLDPFEK--YPDYVLWTALQEVELKDM 457
D D ++P K N + Q+ LF +L FE + + E++ +
Sbjct: 60 DGKDITNLPPHKRPVNT--VFQNYALFP-----HLTVFENIAFGLRLKKLPKAEIKERVA 112
Query: 458 IMEGAGLNMTVYEGGTN-----FSVGQRQLICLARAIVRNNVILVLDEATANVDPK--TD 510
L++ EG N S GQ+Q + +ARA+V +L+LDE +D K D
Sbjct: 113 EA----LDLVQLEGYANRKPSQLSGGQQQRVAIARALVNEPKVLLLDEPLGALDLKLRKD 168
Query: 511 LLIQ-RTIRKKFADCTVLTIAHRLHTIMD-SDKVLVMDSG 548
+ ++ + ++K+ T + + H + SD++ VM+ G
Sbjct: 169 MQLELKRLQKELG-ITFVFVTHDQEEALTMSDRIAVMNKG 207
>gnl|CDD|236863 PRK11153, metN, DL-methionine transporter ATP-binding subunit;
Provisional.
Length = 343
Score = 51.3 bits (124), Expect = 6e-07
Identities = 30/88 (34%), Positives = 44/88 (50%), Gaps = 7/88 (7%)
Query: 341 IEFQNTNVRYLSGPRVI---KNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAE-VEGV 396
IE +N + + G R I N+++ I E G++G +GAGKS+LI I L G
Sbjct: 2 IELKNISKVFPQGGRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGR 61
Query: 397 IKIDDID-TE--DVPLSKLRSNISIIPQ 421
+ +D D T + L K R I +I Q
Sbjct: 62 VLVDGQDLTALSEKELRKARRQIGMIFQ 89
Score = 44.0 bits (105), Expect = 1e-04
Identities = 31/90 (34%), Positives = 46/90 (51%), Gaps = 21/90 (23%)
Query: 474 NFSVGQRQLICLARAIVRNNVILVLDEATANVDPKT-----DLL--IQRTIRKKFADCTV 526
S GQ+Q + +ARA+ N +L+ DEAT+ +DP T +LL I R + T+
Sbjct: 140 QLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDINREL-----GLTI 194
Query: 527 LTIAHRLHTIMD-----SDKVLVMDSGVAV 551
+ I H MD D+V V+D+G V
Sbjct: 195 VLITHE----MDVVKRICDRVAVIDAGRLV 220
>gnl|CDD|131197 TIGR02142, modC_ABC, molybdenum ABC transporter, ATP-binding
protein. This model represents the ATP-binding cassette
(ABC) protein of the three subunit molybdate ABC
transporter. The three proteins of this complex are
homologous to proteins of the sulfate ABC transporter.
Molybdenum may be used in nitrogenases of
nitrogen-fixing bacteria and in molybdopterin cofactors.
In some cases, molybdate may be transported by a sulfate
transporter rather than by a specific molybdate
transporter [Transport and binding proteins, Anions].
Length = 354
Score = 51.3 bits (123), Expect = 7e-07
Identities = 45/201 (22%), Positives = 93/201 (46%), Gaps = 20/201 (9%)
Query: 360 LNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAEV-EGVIKIDDIDTED----VPLSKLRS 414
+ T+ + I GR+G+GK++LI I L EG I ++ D + L +
Sbjct: 16 ADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRKGIFLPPEKR 75
Query: 415 NISIIPQDPVLFSG-TLRKNLDPFEKYPDYVLW--TALQEVELKDMIMEGAGLNMTVYEG 471
I + Q+ LF ++R NL Y + + + ++E G+ +
Sbjct: 76 RIGYVFQEARLFPHLSVRGNL-------RYGMKRARPSERRISFERVIELLGIGHLLGRL 128
Query: 472 GTNFSVGQRQLICLARAIVRNNVILVLDEATANVD-PKTDLLIQ--RTIRKKFADCTVLT 528
S G++Q + + RA++ + +L++DE A +D P+ ++ + +F +L
Sbjct: 129 PGRLSGGEKQRVAIGRALLSSPRLLLMDEPLAALDDPRKYEILPYLERLHAEF-GIPILY 187
Query: 529 IAHRLHTIMD-SDKVLVMDSG 548
++H L ++ +D+V+V++ G
Sbjct: 188 VSHSLQEVLRLADRVVVLEDG 208
>gnl|CDD|213184 cd03217, ABC_FeS_Assembly, ABC-type transport system involved in
Fe-S cluster assembly, ATPase component. Biosynthesis
of iron-sulfur clusters (Fe-S) depends on multi-protein
systems. The SUF system of E. coli and Erwinia
chrysanthemi is important for Fe-S biogenesis under
stressful conditions. The SUF system is made of six
proteins: SufC is an atypical cytoplasmic ABC-ATPase,
which forms a complex with SufB and SufD; SufA plays the
role of a scaffold protein for assembly of iron-sulfur
clusters and delivery to target proteins; SufS is a
cysteine desulfurase which mobilizes the sulfur atom
from cysteine and provides it to the cluster; SufE has
no associated function yet.
Length = 200
Score = 49.8 bits (120), Expect = 7e-07
Identities = 50/206 (24%), Positives = 81/206 (39%), Gaps = 40/206 (19%)
Query: 355 RVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIF---RLAEVEGVIKIDDIDTEDVPLS- 410
++K +N+TI E ++G G+GKS+L I + EG I D D+P
Sbjct: 14 EILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGEDITDLPPEE 73
Query: 411 KLRSNISIIPQDPVLFSGTLRKNLDPFEKYPDYVLWTALQEVELKDMIMEGAGLNMTVYE 470
+ R I + Q P G V+ D + V E
Sbjct: 74 RARLGIFLAFQYPPEIPG-----------------------VKNADFLRY-------VNE 103
Query: 471 GGTNFSVGQRQLICLARAIVRNNVILVLDEATANVDPKTDLLIQRTIRK-KFADCTVLTI 529
G FS G+++ + + ++ + +LDE + +D L+ I K + +VL I
Sbjct: 104 G---FSGGEKKRNEILQLLLLEPDLAILDEPDSGLDIDALRLVAEVINKLREEGKSVLII 160
Query: 530 AH--RLHTIMDSDKVLVMDSGVAVVS 553
H RL + D+V V+ G V S
Sbjct: 161 THYQRLLDYIKPDRVHVLYDGRIVKS 186
>gnl|CDD|226905 COG4525, TauB, ABC-type taurine transport system, ATPase component
[Inorganic ion transport and metabolism].
Length = 259
Score = 50.5 bits (121), Expect = 8e-07
Identities = 52/261 (19%), Positives = 108/261 (41%), Gaps = 35/261 (13%)
Query: 353 GPRVIKNLNITIHPKEKIGIVGRTGAGKSSL--IAAIFRLAEVEGVIKIDDIDTEDVPLS 410
++++++TI E + ++G +G GK++L + A F + G I+++ +
Sbjct: 17 PRSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGF-VTPSRGSIQLNGR-----RIE 70
Query: 411 KLRSNISIIPQDPVLFSG-TLRKN---------LDPFEKYPDYVLWTALQEVELKDMIME 460
+ ++ Q+ L + N ++ ++ A Q L + +E
Sbjct: 71 GPGAERGVVFQNEALLPWLNVIDNVAFGLQLRGIEKAQR-----REIAHQM--LALVGLE 123
Query: 461 GAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATANVDPKTDLLIQRTIRKK 520
GA +++ S G RQ + +ARA+ +L+LDE +D T +Q +
Sbjct: 124 GAEHKY-IWQ----LSGGMRQRVGIARALAVEPQLLLLDEPFGALDALTREQMQELLLDL 178
Query: 521 FADC--TVLTIAHRLH-TIMDSDKVLVMDSGVA-VVSSFGFFFSKDLIEGTVSAKVLSSR 576
+ + VL I H + + + +++V+ G VV F++ G S + S
Sbjct: 179 WQETGKQVLLITHDIEEALFLATRLVVLSPGPGRVVERLPLDFARRYAAGEPSRAIKSDP 238
Query: 577 K-RREKEDRIGESQSFRERTS 596
+ +E+ + E RE S
Sbjct: 239 EFIAMREEVLDEVFEQREAFS 259
>gnl|CDD|224043 COG1118, CysA, ABC-type sulfate/molybdate transport systems, ATPase
component [Inorganic ion transport and metabolism].
Length = 345
Score = 50.8 bits (122), Expect = 9e-07
Identities = 53/229 (23%), Positives = 96/229 (41%), Gaps = 38/229 (16%)
Query: 341 IEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAEVE-GVIKI 399
I N R+ + + ++++ I E + ++G +GAGKS+L+ I L + G I++
Sbjct: 3 IRINNVKKRFGAFGAL-DDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRIRL 61
Query: 400 DDIDTEDVPLSKLRS---NISIIPQDPVLFS----------GTLRKNLDPFEKYPDYVLW 446
+ DV S L + + Q LF G + P E +
Sbjct: 62 NGRVLFDV--SNLAVRDRKVGFVFQHYALFPHMTVADNIAFGLKVRKERPSEAEIRARVE 119
Query: 447 TALQEVELKDMIMEGAGLNMTVYEGGTNF----SVGQRQLICLARAIVRNNVILVLDEAT 502
L+ V+L+ + + S GQRQ + LARA+ +L+LDE
Sbjct: 120 ELLRLVQLEGL--------------ADRYPAQLSGGQRQRVALARALAVEPKVLLLDEPF 165
Query: 503 ANVDPKTDLLIQRTIRK--KFADCTVLTIAHRLHTIMD-SDKVLVMDSG 548
+D K ++R +RK T + + H ++ +D+V+V++ G
Sbjct: 166 GALDAKVRKELRRWLRKLHDRLGVTTVFVTHDQEEALELADRVVVLNQG 214
>gnl|CDD|226647 COG4181, COG4181, Predicted ABC-type transport system involved in
lysophospholipase L1 biosynthesis, ATPase component
[Secondary metabolites biosynthesis, transport, and
catabolism].
Length = 228
Score = 50.1 bits (120), Expect = 9e-07
Identities = 46/175 (26%), Positives = 72/175 (41%), Gaps = 28/175 (16%)
Query: 356 VIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAEV-EGVIKIDDID----TEDVPLS 410
++K + + + E + IVG +G+GKS+L+A + L + G +++ ED +
Sbjct: 25 ILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPSSGEVRLLGQPLHKLDEDA-RA 83
Query: 411 KLRS-NISIIPQDPVLFSGTLRKNLDPFEKYPDYVLWTALQEVELKDMIMEGA------- 462
LR+ ++ + Q S L NL E V E GA
Sbjct: 84 ALRARHVGFVFQ-----SFHLIPNLTALEN----VALPLELRGESSADSRAGAKALLEAV 134
Query: 463 GLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATANVDPKT-----DLL 512
GL + S G++Q + LARA +L DE T N+D T DLL
Sbjct: 135 GLGKRLTHYPAQLSGGEQQRVALARAFAGRPDVLFADEPTGNLDRATGDKIADLL 189
>gnl|CDD|131817 TIGR02770, nickel_nikD, nickel import ATP-binding protein NikD.
This family represents the NikD subunit of a
multisubunit nickel import ABC transporter complex.
Nickel, once imported, may be used in urease and in
certain classes of hydrogenase and superoxide dismutase.
NikD and NikE are homologous [Transport and binding
proteins, Cations and iron carrying compounds].
Length = 230
Score = 49.7 bits (119), Expect = 1e-06
Identities = 56/215 (26%), Positives = 94/215 (43%), Gaps = 37/215 (17%)
Query: 357 IKNLNITIHPKEKIGIVGRTGAGKSSLIAAIF-----RLAEVEGVIKIDDIDTEDVPLSK 411
+++LN+++ E + +VG +G+GKS AI L + G I +D +
Sbjct: 2 VQDLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDG---RPLLPLS 58
Query: 412 LRSN-ISIIPQDPV-----LFS------GTLRKNLDPFEKYPDYVLWTALQEVELKDM-- 457
+R I+ I Q+P LF+ TLR L K ++ AL+ V L D
Sbjct: 59 IRGRHIATIMQNPRTAFNPLFTMGNHAIETLRS-LGKLSKQARALILEALEAVGLPDPEE 117
Query: 458 IMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATANVD---PKTDLLIQ 514
+++ + S G Q + +A A++ L+ DE T ++D L +
Sbjct: 118 VLKKYPFQL---------SGGMLQRVMIALALLLEPPFLIADEPTTDLDVVNQARVLKLL 168
Query: 515 RTIRKKFADCTVLTIAHRLHTIMD-SDKVLVMDSG 548
R +R+ F +L I H L + +D+V VMD G
Sbjct: 169 RELRQLF-GTGILLITHDLGVVARIADEVAVMDDG 202
>gnl|CDD|130041 TIGR00968, 3a0106s01, sulfate ABC transporter, ATP-binding protein.
[Transport and binding proteins, Anions].
Length = 237
Score = 49.8 bits (119), Expect = 1e-06
Identities = 57/216 (26%), Positives = 104/216 (48%), Gaps = 17/216 (7%)
Query: 341 IEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAEVE-GVIKI 399
IE N + R+ S + + ++N+ + + ++G +G+GKS+L+ I L + + G I++
Sbjct: 1 IEIANISKRFGSF-QALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPDSGRIRL 59
Query: 400 DDIDTEDVPLSKLRSNISIIPQDPVLFSG-TLRKNLD---PFEKYPDYVLWTALQEVELK 455
+ D V I + Q LF T+R N+ K+P + ++E+ L+
Sbjct: 60 NGQDATRVHAR--DRKIGFVFQHYALFKHLTVRDNIAFGLEIRKHPKAKIKARVEEL-LE 116
Query: 456 DMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATANVDPKTDLLIQR 515
+ +EG G S GQRQ + LARA+ +L+LDE +D K ++
Sbjct: 117 LVQLEGLGDRYP-----NQLSGGQRQRVALARALAVEPQVLLLDEPFGALDAKVRKELRS 171
Query: 516 TIRKKFADCTVLT--IAHRLHTIMD-SDKVLVMDSG 548
+RK + V T + H M+ +D+++VM +G
Sbjct: 172 WLRKLHDEVHVTTVFVTHDQEEAMEVADRIVVMSNG 207
>gnl|CDD|163452 TIGR03740, galliderm_ABC, gallidermin-class lantibiotic protection
ABC transporter, ATP-binding subunit. Model TIGR03731
represents the family of all lantibiotics related to
gallidermin, including epidermin, mutatin, and nisin.
This protein family describes the ATP-binding subunit of
a gallidermin/epidermin class lantibiotic protection
transporter. It is largely restricted to
gallidermin-family lantibiotic biosynthesis and export
cassettes, but also occurs in orphan transporter
cassettes in species that lack candidate lantibiotic
precursor and synthetase genes.
Length = 223
Score = 48.9 bits (117), Expect = 2e-06
Identities = 43/154 (27%), Positives = 73/154 (47%), Gaps = 13/154 (8%)
Query: 356 VIKNLNITIHPKEKI-GIVGRTGAGKSSLIAAIF-RLAEVEGVIKIDDIDTEDVPLSKLR 413
+ N+++T+ PK + G++G GAGKS+L+ I L G I D L K+
Sbjct: 15 AVNNISLTV-PKNSVYGLLGPNGAGKSTLLKMITGILRPTSGEIIFDGHPWTRKDLHKIG 73
Query: 414 SNISIIPQDPVLFSGTLRKNLDPFEKYPDYVLWTALQEVELKDMIMEGAGLNMTVYEGGT 473
S I + P L+ +NL E + L + + D ++ L T +
Sbjct: 74 SLI----ESPPLY-----ENLTARENLKVHTTLLGLPDSRI-DEVLNIVDLTNTGKKKAK 123
Query: 474 NFSVGQRQLICLARAIVRNNVILVLDEATANVDP 507
FS+G +Q + +A A++ + +L+LDE T +DP
Sbjct: 124 QFSLGMKQRLGIAIALLNHPKLLILDEPTNGLDP 157
>gnl|CDD|233305 TIGR01189, ccmA, heme ABC exporter, ATP-binding protein CcmA. This
model describes the cyt c biogenesis protein encoded by
ccmA in bacteria. An exception is, an arabidopsis
protein. Quite likely this is encoded by an organelle.
Bacterial c-type cytocromes are located on the
periplasmic side of the cytoplasmic membrane. Several
gene products encoded in a locus designated as 'ccm' are
implicated in the transport and assembly of the
functional cytochrome C. This cluster includes genes:
ccmA;B;C;D;E;F;G and H. The posttranslational pathway
includes the transport of heme moiety, the secretion of
the apoprotein and the covalent attachment of the heme
with the apoprotein. The proteins ccmA and B represent
an ABC transporter; ccmC and D participate in heme
transfer to ccmE, which function as a periplasmic heme
chaperone. The presence of ccmF, G and H is suggested to
be obligatory for the final functional assembly of
cytochrome c [Protein fate, Protein and peptide
secretion and trafficking, Transport and binding
proteins, Other].
Length = 198
Score = 48.1 bits (115), Expect = 2e-06
Identities = 36/181 (19%), Positives = 66/181 (36%), Gaps = 36/181 (19%)
Query: 353 GPRVIKNLNITIHPKEKIGIVGRTGAGKSSL---IAAIFRLAEVEGVIKIDDIDTEDVPL 409
+ + L+ T++ E + + G G GK++L +A + R G ++ + L
Sbjct: 12 ERMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRP--DSGEVRWNG-----TAL 64
Query: 410 SKLRSNISIIPQDPVLFSG---------TLRKNLD---PFEKYPDYVLWTALQEVELKDM 457
++ R P +L+ G + +NL + AL V L
Sbjct: 65 AEQRD----EPHRNILYLGHLPGLKPELSALENLHFWAAIHGGAQRTIEDALAAVGLTGF 120
Query: 458 IMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATANVDPKTDLLIQRTI 517
A S GQ++ + LAR + + +LDE T +D L+ +
Sbjct: 121 EDLPAA----------QLSAGQQRRLALARLWLSRAPLWILDEPTTALDKAGVALLAGLL 170
Query: 518 R 518
R
Sbjct: 171 R 171
>gnl|CDD|226637 COG4167, SapF, ABC-type antimicrobial peptide transport system,
ATPase component [Defense mechanisms].
Length = 267
Score = 49.0 bits (117), Expect = 2e-06
Identities = 52/215 (24%), Positives = 87/215 (40%), Gaps = 34/215 (15%)
Query: 357 IKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAE-VEGVIKIDDIDTEDVPLSKLRSN 415
+K ++ T+ + + I+G G+GKS+L + + E G I I+D S
Sbjct: 29 VKPVSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGEILINDHPLHFGDYSFRSKR 88
Query: 416 ISIIPQDP-----------VLFSGTLRKNLDPFEKYPDYVLWTALQEVELKDMIMEGAGL 464
I +I QDP + LR N D Q + + GL
Sbjct: 89 IRMIFQDPNTSLNPRLRIGQILDFPLRLNTD----------LEPEQRRKQIFETLRMVGL 138
Query: 465 NMTVYEGGTNF-----SVGQRQLICLARAIVRNNVILVLDEATANVDP--KTDLL-IQRT 516
N+ + GQ+Q + LARA++ I++ DEA A++D ++ L+ +
Sbjct: 139 ----LPDHANYYPHMLAPGQKQRVALARALILRPKIIIADEALASLDMSMRSQLINLMLE 194
Query: 517 IRKKFADCTVLTIAHRLHTIMDSDKVLVMDSGVAV 551
+++K + H SD+VLVM G V
Sbjct: 195 LQEKQGISYIYVTQHIGMIKHISDQVLVMHEGEVV 229
>gnl|CDD|130324 TIGR01257, rim_protein, retinal-specific rim ABC transporter. This
model describes the photoreceptor protein (rim protein)
in eukaryotes. It is the member of ABC transporter
superfamily. Rim protein is a membrane glycoprotein which
is localized in the photoreceptor outer segment discs.
Mutation/s in its genetic loci is implicated in the
recessive Stargardt's disease [Transport and binding
proteins, Other].
Length = 2272
Score = 50.4 bits (120), Expect = 3e-06
Identities = 50/203 (24%), Positives = 92/203 (45%), Gaps = 10/203 (4%)
Query: 352 SGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIF-RLAEVEGVIKIDDIDTEDVPLS 410
SG + LNIT + + +G GAGK++ ++ + L G + + D E L
Sbjct: 941 SGRPAVDRLNITFYENQITAFLGHNGAGKTTTLSILTGLLPPTSGTVLVGGKDIE-TNLD 999
Query: 411 KLRSNISIIPQDPVLFSGTLRKNLDPFEKYPDYVLWTALQEVELKDMIMEGAGLNMTVYE 470
+R ++ + PQ +LF F W Q +E++ M +E GL+ E
Sbjct: 1000 AVRQSLGMCPQHNILFHHLTVAEHILFYAQLKGRSWEEAQ-LEMEAM-LEDTGLHHKRNE 1057
Query: 471 GGTNFSVGQRQLICLARAIVRNNVILVLDEATANVDPKTDLLIQRTIRKKFADCTVLTIA 530
+ S G ++ + +A A V + ++VLDE T+ VDP + I + K + T++
Sbjct: 1058 EAQDLSGGMQRKLSVAIAFVGDAKVVVLDEPTSGVDPYSRRSIWDLLLKYRSGRTIIMST 1117
Query: 531 HRLHTIMDSDKVLVMDSGVAVVS 553
H + D+ ++ +A++S
Sbjct: 1118 HHM------DEADLLGDRIAIIS 1134
>gnl|CDD|163585 TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC transporter,
ATP-binding protein. This small clade of ABC-type
transporter ATP-binding protein components is found as a
three gene cassette along with a periplasmic
substrate-binding protein (TIGR03868) and a permease
(TIGR03869). The organisms containing this cassette are
all Actinobacteria and all contain numerous genes
requiring the coenzyme F420. This model was defined
based on five such organisms, four of which are lacking
all F420 biosynthetic capability save the final
side-chain polyglutamate attachment step (via the gene
cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and
marine actinobacterium PHSC20C1 this cassette is in an
apparent operon with the cofE gene and, in PHSC20C1,
also with a F420-dependent glucose-6-phosphate
dehydrogenase (TIGR03554). Based on these observations
we propose that this ATP-binding protein is a component
of an F420-0 (that is, F420 lacking only the
polyglutamate tail) transporter.
Length = 256
Score = 48.7 bits (116), Expect = 3e-06
Identities = 48/208 (23%), Positives = 92/208 (44%), Gaps = 15/208 (7%)
Query: 356 VIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIF-RLAEVEGVIKIDDIDTEDVPLSKLRS 414
++ +++T P G++G G+GKS+L+ + L G + + +D +
Sbjct: 16 IVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDLAGVDLHGLSRRARAR 75
Query: 415 NISIIPQD-----PVLFSGTLRKNLDPFEKYPDYVLWTA--LQEVELKDMIMEGAGLNMT 467
++++ QD P+ T+R + + P LW + + D + L+
Sbjct: 76 RVALVEQDSDTAVPL----TVRDVV-ALGRIPHRSLWAGDSPHDAAVVDRALARTELSHL 130
Query: 468 VYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATANVDPKTDLLIQRTIRKKFAD-CTV 526
+ S G+RQ + +ARA+ + +L+LDE T ++D + L +R+ A TV
Sbjct: 131 ADRDMSTLSGGERQRVHVARALAQEPKLLLLDEPTNHLDVRAQLETLALVRELAATGVTV 190
Query: 527 LTIAHRL-HTIMDSDKVLVMDSGVAVVS 553
+ H L D V+V+D G V +
Sbjct: 191 VAALHDLNLAASYCDHVVVLDGGRVVAA 218
>gnl|CDD|183244 PRK11629, lolD, lipoprotein transporter ATP-binding subunit;
Provisional.
Length = 233
Score = 48.3 bits (115), Expect = 4e-06
Identities = 52/207 (25%), Positives = 83/207 (40%), Gaps = 45/207 (21%)
Query: 356 VIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAEVEGVIKIDDIDTEDVPLSKLRSN 415
V+ N++ +I E + IVG +G+GKS+L+ + L D+ P+SKL S
Sbjct: 24 VLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTS----GDVIFNGQPMSKLSSA 79
Query: 416 ISIIPQDPVLFSGTLRKNLDPF-----EKYPDYVLWTALQEVELKDMI------------ 458
LR F PD+ TAL+ V + +I
Sbjct: 80 AK----------AELRNQKLGFIYQFHHLLPDF---TALENVAMPLLIGKKKPAEINSRA 126
Query: 459 ---MEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATANVDPKT-----D 510
+ GL + S G+RQ + +ARA+V N +++ DE T N+D +
Sbjct: 127 LEMLAAVGLEHRANHRPSELSGGERQRVAIARALVNNPRLVLADEPTGNLDARNADSIFQ 186
Query: 511 LLIQRTIRKKFADCTV---LTIAHRLH 534
LL + + A V L +A R+
Sbjct: 187 LLGELNRLQGTAFLVVTHDLQLAKRMS 213
>gnl|CDD|184203 PRK13643, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 288
Score = 48.6 bits (115), Expect = 4e-06
Identities = 50/223 (22%), Positives = 101/223 (45%), Gaps = 19/223 (8%)
Query: 341 IEFQNTNVRYLS----GPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAE-VEG 395
I+F+ N Y R + ++++ + ++G TG+GKS+L+ + L + EG
Sbjct: 2 IKFEKVNYTYQPNSPFASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEG 61
Query: 396 VIKIDDI----DTEDVPLSKLRSNISIIPQDP--VLFSGTLRKNLDPFEKYPDYVLWTAL 449
+ + DI ++ + +R + ++ Q P LF T+ K++ +
Sbjct: 62 KVTVGDIVVSSTSKQKEIKPVRKKVGVVFQFPESQLFEETVLKDV----AFGPQNFGIPK 117
Query: 450 QEVE-LKDMIMEGAGLNMTVYEGGT-NFSVGQRQLICLARAIVRNNVILVLDEATANVDP 507
++ E + +E GL +E S GQ + + +A + +LVLDE TA +DP
Sbjct: 118 EKAEKIAAEKLEMVGLADEFWEKSPFELSGGQMRRVAIAGILAMEPEVLVLDEPTAGLDP 177
Query: 508 KTDLLIQRTIRK-KFADCTVLTIAHRLHTIMD-SDKVLVMDSG 548
K + + + + TV+ + H + + D +D V +++ G
Sbjct: 178 KARIEMMQLFESIHQSGQTVVLVTHLMDDVADYADYVYLLEKG 220
>gnl|CDD|225265 COG2401, COG2401, ABC-type ATPase fused to a predicted
acetyltransferase domain [General function prediction
only].
Length = 593
Score = 49.5 bits (118), Expect = 4e-06
Identities = 48/208 (23%), Positives = 98/208 (47%), Gaps = 25/208 (12%)
Query: 356 VIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAEVEGVIKIDDIDTEDVPLSKLRSN 415
V++NLN+ I P + + +VG++GAGK++L+ I + G ++ D ++ N
Sbjct: 398 VLRNLNLEIKPGDVVAVVGQSGAGKTTLLRMILGAQKGRG----EEKYRPDSGKVEVPKN 453
Query: 416 I--SIIPQ--DPVLFSGTLRKNLDPFEKYPDYVLWTALQEVELKDMIMEGAGLNMTV-YE 470
++IP +P T+ ++L + ++ I+ AGL+ V Y
Sbjct: 454 TVSALIPGEYEPEFGEVTILEHL-----------RSKTGDLNAAVEILNRAGLSDAVLYR 502
Query: 471 GGTN-FSVGQRQLICLARAIVRNNVILVLDEATANVDPKTDLLIQRTIRK--KFADCTVL 527
+ S GQ++ LA+ + +L++DE A++D T + + R I + + A T++
Sbjct: 503 RKFSELSTGQKERAKLAKLLAERPNVLLIDEFAAHLDELTAVRVARKISELAREAGITLI 562
Query: 528 TIAHRLHTI--MDSDKVLVMDSGVAVVS 553
+ HR + D ++++ G V+
Sbjct: 563 VVTHRPEVGNALRPDTLILVGYGKVPVN 590
>gnl|CDD|131681 TIGR02633, xylG, D-xylose ABC transporter, ATP-binding protein.
Several bacterial species have enzymes xylose isomerase
and xylulokinase enzymes for xylose utilization. Members
of this protein family are the ATP-binding cassette
(ABC) subunit of the known or predicted high-affinity
xylose ABC transporter for xylose import. These genes,
which closely resemble other sugar transport ABC
transporter genes, typically are encoded near xylose
utilization enzymes and regulatory proteins. Note that
this form of the transporter contains two copies of the
ABC transporter domain (pfam00005) [Transport and
binding proteins, Carbohydrates, organic alcohols, and
acids].
Length = 500
Score = 49.1 bits (117), Expect = 5e-06
Identities = 51/221 (23%), Positives = 102/221 (46%), Gaps = 31/221 (14%)
Query: 348 VRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSL---IAAIFRLAEVEGVIKIDDI-- 402
V+ G + + +++ + P E +G+ G GAGKS+L ++ ++ +G I
Sbjct: 8 VKTFGGVKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSPL 67
Query: 403 ------DTEDVPLSKLRSNISIIPQDPVL---FSGTLRKNLDPFEKYPDYVLWTA--LQE 451
DTE + + ++++P+ V F G Y L L+E
Sbjct: 68 KASNIRDTERAGIVIIHQELTLVPELSVAENIFLGNEITLPGGRMAYNAMYLRAKNLLRE 127
Query: 452 VELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATANVDPK-TD 510
++L N+T G ++ GQ+QL+ +A+A+ + +L+LDE ++++ K T+
Sbjct: 128 LQLDAD-------NVTRPVG--DYGGGQQQLVEIAKALNKQARLLILDEPSSSLTEKETE 178
Query: 511 LL--IQRTIRKKFADCTVLTIAHRLHTIMD-SDKVLVMDSG 548
+L I R ++ C + I+H+L+ + D + V+ G
Sbjct: 179 ILLDIIRDLKAHGVAC--VYISHKLNEVKAVCDTICVIRDG 217
Score = 46.7 bits (111), Expect = 3e-05
Identities = 49/212 (23%), Positives = 100/212 (47%), Gaps = 28/212 (13%)
Query: 357 IKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAE--VEGVIKID--DIDTEDVPLSKL 412
+ +++ ++ E +G+ G GAG++ L+ A+F EG + I+ +D + P +
Sbjct: 276 VDDVSFSLRRGEILGVAGLVGAGRTELVQALFGAYPGKFEGNVFINGKPVDIRN-PAQAI 334
Query: 413 RSNISIIPQD-------PVLFSGTLRKN--LDPFEKYPDYVLWTALQEV-----ELKDMI 458
R+ I+++P+D P+L G KN L + + + A E+ ++ +
Sbjct: 335 RAGIAMVPEDRKRHGIVPILGVG---KNITLSVLKSFCFKMRIDAAAELQIIGSAIQRLK 391
Query: 459 MEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATANVDPKTDLLIQRTIR 518
++ A + + S G +Q LA+ ++ N +L+LDE T VD I + I
Sbjct: 392 VKTASPFLPI----GRLSGGNQQKAVLAKMLLTNPRVLILDEPTRGVDVGAKYEIYKLIN 447
Query: 519 KKFAD-CTVLTIAHRLHTIMD-SDKVLVMDSG 548
+ + ++ ++ L ++ SD+VLV+ G
Sbjct: 448 QLAQEGVAIIVVSSELAEVLGLSDRVLVIGEG 479
>gnl|CDD|236898 PRK11308, dppF, dipeptide transporter ATP-binding subunit;
Provisional.
Length = 327
Score = 48.0 bits (115), Expect = 7e-06
Identities = 59/225 (26%), Positives = 100/225 (44%), Gaps = 36/225 (16%)
Query: 351 LSGPRVIKNLN---ITIHPKEKIGIVGRTGAGKSSLIAAIFRLAEV--EGVIKIDDIDTE 405
R++K L+ T+ + + +VG +G GKS+L A + + E G + D
Sbjct: 22 FKPERLVKALDGVSFTLERGKTLAVVGESGCGKSTL-ARLLTMIETPTGGELYYQGQDLL 80
Query: 406 DVP---LSKLRSNISIIPQDPVLFSGTL--RKNLDPFEKYPDYVLWTALQEVELKDMI-- 458
LR I I+ Q+P G+L RK + + P ++ T+L E ++
Sbjct: 81 KADPEAQKLLRQKIQIVFQNPY---GSLNPRKKVGQILEEP-LLINTSLSAAERREKALA 136
Query: 459 -MEGAGLNMTVYEGGTN-FSVGQRQLICLARAIVRNNVILVLDEATANVDPKTDLLIQRT 516
M GL Y+ + FS GQRQ I +ARA++ + ++V DE + + D+ +Q
Sbjct: 137 MMAKVGLRPEHYDRYPHMFSGGQRQRIAIARALMLDPDVVVADEPVSAL----DVSVQAQ 192
Query: 517 IRKKFAD------CTVLTIAHRL----HTIMDSDKVLVMDSGVAV 551
+ D + + I+H L H +D+V+VM G V
Sbjct: 193 VLNLMMDLQQELGLSYVFISHDLSVVEHI---ADEVMVMYLGRCV 234
>gnl|CDD|213263 cd03296, ABC_CysA_sulfate_importer, ATP-binding cassette domain of
the sulfate transporter. Part of the ABC transporter
complex cysAWTP involved in sulfate import. Responsible
for energy coupling to the transport system. The complex
is composed of two ATP-binding proteins (cysA), two
transmembrane proteins (cysT and cysW), and a
solute-binding protein (cysP). ABC transporters are a
large family of proteins involved in the transport of a
wide variety of different compounds, like sugars, ions,
peptides, and more complex organic molecules. The
nucleotide binding domain shows the highest similarity
between all members of the family. ABC transporters are
a subset of nucleotide hydrolases that contain a
signature motif, Q-loop, and H-loop/switch region, in
addition to, the Walker A motif/P-loop and Walker B
motif commonly found in a number of ATP- and GTP-binding
and hydrolyzing proteins.
Length = 239
Score = 47.3 bits (113), Expect = 7e-06
Identities = 56/224 (25%), Positives = 102/224 (45%), Gaps = 29/224 (12%)
Query: 341 IEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAEV-EGVIKI 399
IE +N + R+ + ++++ I E + ++G +G+GK++L+ I L G I
Sbjct: 3 IEVRNVSKRF-GDFVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILF 61
Query: 400 DDIDTEDVPLSKLRSNISIIPQDPVLFSG-TLRKNL------DPFEKYPDYVLWTALQEV 452
D DVP+ + N+ + Q LF T+ N+ P + P E
Sbjct: 62 GGEDATDVPVQE--RNVGFVFQHYALFRHMTVFDNVAFGLRVKPRSERPP--------EA 111
Query: 453 ELKDMIMEGAGLNMTVYEGGTN-----FSVGQRQLICLARAIVRNNVILVLDEATANVDP 507
E++ + E L + + + S GQRQ + LARA+ +L+LDE +D
Sbjct: 112 EIRAKVHEL--LKLVQLDWLADRYPAQLSGGQRQRVALARALAVEPKVLLLDEPFGALDA 169
Query: 508 KTDLLIQRTIRKKFADCTVLTI--AHRLHTIMD-SDKVLVMDSG 548
K ++R +R+ + V T+ H ++ +D+V+VM+ G
Sbjct: 170 KVRKELRRWLRRLHDELHVTTVFVTHDQEEALEVADRVVVMNKG 213
>gnl|CDD|226631 COG4152, COG4152, ABC-type uncharacterized transport system, ATPase
component [General function prediction only].
Length = 300
Score = 47.7 bits (114), Expect = 8e-06
Identities = 56/239 (23%), Positives = 102/239 (42%), Gaps = 35/239 (14%)
Query: 356 VIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAE-VEGVIKIDDIDTEDVPLSKLRS 414
+ N++ + P E G++G GAGK++ I L E EG I + PLS+
Sbjct: 17 AVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEPTEGEITWN-----GGPLSQEIK 71
Query: 415 N-ISIIPQDPVLFSGTLRKNLDPFEKYPDYVLWTA------LQEVELK-DMIMEGAGLNM 466
N I +P++ + L P D + + A E++ K +E +
Sbjct: 72 NRIGYLPEE---------RGLYPKMTVEDQLKYLAELKGMPKAEIQKKLQAWLERLEIVG 122
Query: 467 TVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATANVDP-KTDLLIQRTIRKKFADCT 525
+ S G +Q I A++ +L+LDE + +DP +LL K T
Sbjct: 123 KKTKKIKELSKGNQQKIQFISAVIHEPELLILDEPFSGLDPVNVELLKDAIFELKEEGAT 182
Query: 526 VLTIAHRLHTIMD-SDKVLVMDSGVAVV--------SSFGFFFSKDLIEGTVSAKVLSS 575
++ +HR+ + + D++L++ G V+ SFG + +IE +S + L++
Sbjct: 183 IIFSSHRMEHVEELCDRLLMLKKGQTVLYGTVEDIRRSFG--KKRLVIESDLSLEELAN 239
>gnl|CDD|237457 PRK13647, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 274
Score = 47.4 bits (113), Expect = 9e-06
Identities = 55/238 (23%), Positives = 104/238 (43%), Gaps = 52/238 (21%)
Query: 341 IEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIA---AIFRLAEVEGVI 397
IE ++ + RY G + +K L+++I K ++G GAGKS+L+ I+ L + G +
Sbjct: 5 IEVEDLHFRYKDGTKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIY-LPQ-RGRV 62
Query: 398 KIDDIDTEDVPLSKLRSNISIIPQDP--VLFSGTLRK-------NLDPFEKYPDYVLWTA 448
K+ + +RS + ++ QDP +FS T+ N+ + + + A
Sbjct: 63 KVMGREVNAENEKWVRSKVGLVFQDPDDQVFSSTVWDDVAFGPVNMGLDKDEVERRVEEA 122
Query: 449 LQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATANVDPK 508
L+ V + D + + S GQ++ + +A + + ++VLDE A +DP+
Sbjct: 123 LKAVRMWDF----------RDKPPYHLSYGQKKRVAIAGVLAMDPDVIVLDEPMAYLDPR 172
Query: 509 TDLLIQRTIRKKFADCTVLTIAHRLH----TIMDS-----------DKVLVMDSGVAV 551
Q T+ I RLH T++ + D+V+V+ G +
Sbjct: 173 G----QETLM---------EILDRLHNQGKTVIVATHDVDLAAEWADQVIVLKEGRVL 217
>gnl|CDD|184200 PRK13640, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 282
Score = 47.5 bits (113), Expect = 9e-06
Identities = 57/228 (25%), Positives = 98/228 (42%), Gaps = 34/228 (14%)
Query: 341 IEFQNTNVRYLSGPR-VIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRL----AEVEG 395
+EF++ + Y + + +++ +I ++G G+GKS++ I L
Sbjct: 6 VEFKHVSFTYPDSKKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNS 65
Query: 396 VIKIDDIDTEDVPLSKLRSNISIIPQDP------------VLFSGTLRKNLDPFEKYPDY 443
I +D I + +R + I+ Q+P V F L P +
Sbjct: 66 KITVDGITLTAKTVWDIREKVGIVFQNPDNQFVGATVGDDVAFG--LENRAVPRPEMIKI 123
Query: 444 VLWTALQEVELKDMI-MEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEAT 502
V L +V + D I E A N S GQ+Q + +A + I++LDE+T
Sbjct: 124 VR-DVLADVGMLDYIDSEPA-----------NLSGGQKQRVAIAGILAVEPKIIILDEST 171
Query: 503 ANVDPKTDLLIQRTIRK--KFADCTVLTIAHRLHTIMDSDKVLVMDSG 548
+ +DP I + IRK K + TV++I H + +D+VLV+D G
Sbjct: 172 SMLDPAGKEQILKLIRKLKKKNNLTVISITHDIDEANMADQVLVLDDG 219
>gnl|CDD|182829 PRK10908, PRK10908, cell division protein FtsE; Provisional.
Length = 222
Score = 46.4 bits (110), Expect = 1e-05
Identities = 45/174 (25%), Positives = 79/174 (45%), Gaps = 14/174 (8%)
Query: 341 IEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAE-VEGVI-- 397
I F++ + YL G + ++ + + P E + G +GAGKS+L+ I + G I
Sbjct: 2 IRFEHVSKAYLGGRQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWF 61
Query: 398 ---KIDDIDTEDVPLSKLRSNISIIPQD-PVLFSGTLRKNLDPFEKYPDYVLWTALQEVE 453
I + +VP LR I +I QD +L T+ N+ P + + ++
Sbjct: 62 SGHDITRLKNREVPF--LRRQIGMIFQDHHLLMDRTVYDNV----AIPLIIAGASGDDIR 115
Query: 454 LK-DMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATANVD 506
+ ++ GL S G++Q + +ARA+V +L+ DE T N+D
Sbjct: 116 RRVSAALDKVGLLDKAKNFPIQLSGGEQQRVGIARAVVNKPAVLLADEPTGNLD 169
>gnl|CDD|213204 cd03237, ABC_RNaseL_inhibitor_domain2, The ATP-binding cassette
domain 2 of RNase L inhibitor. The ABC ATPase, RNase L
inhibitor (RLI), is a key enzyme in ribosomal
biogenesis, formation of translation preinitiation
complexes, and assembly of HIV capsids. RLI's are not
transport proteins and thus cluster with a group of
soluble proteins that lack the transmembrane components
commonly found in other members of the family.
Structurally, RLI's have an N-terminal Fe-S domain and
two nucleotide-binding domains which are arranged to
form two composite active sites in their interface
cleft. RLI is one of the most conserved enzymes between
archaea and eukaryotes with a sequence identity of more
than 48%. The high degree of evolutionary conservation
suggests that RLI performs a central role in archaeal
and eukaryotic physiology.
Length = 246
Score = 46.6 bits (111), Expect = 1e-05
Identities = 48/190 (25%), Positives = 84/190 (44%), Gaps = 26/190 (13%)
Query: 363 TIHPKEKIGIVGRTGAGKSSLIAAIFRLAEVEGVIKIDDIDTEDVPLSKLRSNISIIPQD 422
+I E IGI+G G GK++ I LA GV+K D+ D E +S PQ
Sbjct: 21 SISESEVIGILGPNGIGKTTFIKM---LA---GVLKPDEGDIE-----IELDTVSYKPQY 69
Query: 423 -PVLFSGTLRKNLDPFEKYPDYVLWTALQEVELKDMIMEGAGLNMTVYEGG-TNFSVGQR 480
+ GT+R L D+ + K + +E + + S G+
Sbjct: 70 IKADYEGTVRDLL--SSITKDFYTHPYFKTEIAKPLQIEQ------ILDREVPELSGGEL 121
Query: 481 QLICLARAIVRNNVILVLDEATANVDPKTDLLIQRTIRKKFA---DCTVLTIAHRLHTI- 536
Q + +A + ++ I +LDE +A +D + L+ + IR +FA + T + H + I
Sbjct: 122 QRVAIAACLSKDADIYLLDEPSAYLDVEQRLMASKVIR-RFAENNEKTAFVVEHDIIMID 180
Query: 537 MDSDKVLVMD 546
+D+++V +
Sbjct: 181 YLADRLIVFE 190
>gnl|CDD|172200 PRK13652, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 277
Score = 46.3 bits (110), Expect = 2e-05
Identities = 51/223 (22%), Positives = 100/223 (44%), Gaps = 27/223 (12%)
Query: 341 IEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSL---IAAIFRLAEVEGVI 397
IE ++ Y + N+N +I ++G GAGKS+L I + +I
Sbjct: 4 IETRDLCYSYSGSKEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVLI 63
Query: 398 KIDDIDTEDVPLSKLRSNISIIPQDP--VLFSGTLRK-------NLDPFEKYPDYVLWTA 448
+ + I E++ ++R + ++ Q+P +FS T+ + NL E+ + + +A
Sbjct: 64 RGEPITKENI--REVRKFVGLVFQNPDDQIFSPTVEQDIAFGPINLGLDEETVAHRVSSA 121
Query: 449 LQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATANVDPK 508
L + L+++ + S G+++ + +A I +LVLDE TA +DP+
Sbjct: 122 LHMLGLEELRDRVP----------HHLSGGEKKRVAIAGVIAMEPQVLVLDEPTAGLDPQ 171
Query: 509 TDLLIQRTIRK--KFADCTVLTIAHRLHTIMD-SDKVLVMDSG 548
+ + + TV+ H+L + + +D + VMD G
Sbjct: 172 GVKELIDFLNDLPETYGMTVIFSTHQLDLVPEMADYIYVMDKG 214
>gnl|CDD|213261 cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette domain of the
osmoprotectant proline/glycine betaine uptake system.
This family comprises the glycine betaine/L-proline ATP
binding subunit in bacteria and its equivalents in
archaea. This transport system belong to the larger
ATP-Binding Cassette (ABC) transporter superfamily. The
characteristic feature of these transporters is the
obligatory coupling of ATP hydrolysis to substrate
translocation. ABC transporters are a subset of
nucleotide hydrolases that contain a signature motif,
Q-loop, and H-loop/switch region, in addition to, the
Walker A motif/P-loop and Walker B motif commonly found
in a number of ATP- and GTP-binding and hydrolyzing
proteins.
Length = 269
Score = 45.7 bits (109), Expect = 3e-05
Identities = 59/216 (27%), Positives = 103/216 (47%), Gaps = 25/216 (11%)
Query: 352 SGPRV-IKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAE-VEGVIKIDDIDTEDVP- 408
+G V + ++++ + E I+G +G+GKS+L+ I RL E G + ID D +
Sbjct: 34 TGQTVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAMSR 93
Query: 409 --LSKLRSN-ISIIPQDPVLFSG-TLRKNLDPFEKYPDYVLWTALQEVELKDM-IMEGAG 463
L +LR IS++ Q L T+ +N+ + V E E + +E G
Sbjct: 94 KELRELRRKKISMVFQSFALLPHRTVLENV----AFGLEVQGVPRAEREERAAEALELVG 149
Query: 464 LNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATANVDP------KTDLL-IQRT 516
L ++ S G +Q + LARA+ + IL++DEA + +DP + +LL +Q
Sbjct: 150 LEGWEHKYPDELSGGMQQRVGLARALAVDPDILLMDEAFSALDPLIRREMQDELLRLQAE 209
Query: 517 IRKKFADCTVLTIAHRLHTIMD-SDKVLVMDSGVAV 551
++K T++ I H L + D++ +M G V
Sbjct: 210 LQK-----TIVFITHDLDEALRLGDRIAIMKDGRLV 240
>gnl|CDD|162242 TIGR01187, potA, spermidine/putrescine ABC transporter ATP-binding
subunit. This model describes spermidine/putrescine ABC
transporter, ATP binding subunit in bacteria and its
equivalents in archaea. This transport system belong to
the larger ATP-Binding Cassette (ABC) transporter
superfamily. The characteristic feature of these
transporter is the obligatory coupling of ATP hydrolysis
to substrate translocation. The minimal configuration of
bacterial ABC transport system: an ATPase or ATP binding
subunit; An integral membrane protein; a hydrophilic
polypetpide, which likely functions as substrate binding
protein. Polyamines like spermidine and putrescine play
vital role in cell proliferation, differentiation, and
ion homeostasis. The concentration of polyamines within
the cell are regulated by biosynthesis, degradation and
transport (uptake and efflux included) [Transport and
binding proteins, Amino acids, peptides and amines].
Length = 325
Score = 45.9 bits (109), Expect = 3e-05
Identities = 47/185 (25%), Positives = 87/185 (47%), Gaps = 16/185 (8%)
Query: 372 IVGRTGAGKSSLIAAIFRLAEV-EGVIKIDDIDTEDVPLSKLRSNISIIPQDPVLFSG-T 429
++G +G GK++L+ + + G I +D D +VP LR I+++ Q LF T
Sbjct: 1 LLGPSGCGKTTLLRLLAGFEQPDSGSIMLDGEDVTNVP-PHLRH-INMVFQSYALFPHMT 58
Query: 430 LRKNLDPFEKYPDYVLWTALQEVELKDMIMEGAGL-NMTVYEGG--TNFSVGQRQLICLA 486
+ +N+ + + + E+K ++E L + + S GQ+Q + LA
Sbjct: 59 VEENV----AFG--LKMRKVPRAEIKPRVLEALRLVQLEEFADRKPHQLSGGQQQRVALA 112
Query: 487 RAIVRNNVILVLDEATANVDPKTDLLIQ---RTIRKKFADCTVLTIAHRLHTIMDSDKVL 543
RA+V IL+LDE + +D K +Q +TI+++ V + + SD++
Sbjct: 113 RALVFKPKILLLDEPLSALDKKLRDQMQLELKTIQEQLGITFVFVTHDQEEAMTMSDRIA 172
Query: 544 VMDSG 548
+M G
Sbjct: 173 IMRKG 177
>gnl|CDD|236523 PRK09452, potA, putrescine/spermidine ABC transporter ATPase
protein; Reviewed.
Length = 375
Score = 46.1 bits (110), Expect = 3e-05
Identities = 45/178 (25%), Positives = 83/178 (46%), Gaps = 24/178 (13%)
Query: 341 IEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAEV-EGVIKI 399
+E + + + G VI NL++TI+ E + ++G +G GK++++ I G I +
Sbjct: 15 VELRGISKSF-DGKEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRIML 73
Query: 400 DDIDTEDVPLSKLRSNISIIPQDPVLFSG-TLRKNLD--------PFEKYPDYVLWTALQ 450
D D VP +++ + Q LF T+ +N+ P + V+ AL+
Sbjct: 74 DGQDITHVPAEN--RHVNTVFQSYALFPHMTVFENVAFGLRMQKTPAAEITPRVM-EALR 130
Query: 451 EVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATANVDPK 508
V+L++ S GQ+Q + +ARA+V +L+LDE+ + +D K
Sbjct: 131 MVQLEEFA----------QRKPHQLSGGQQQRVAIARAVVNKPKVLLLDESLSALDYK 178
>gnl|CDD|184204 PRK13645, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 289
Score = 45.8 bits (108), Expect = 3e-05
Identities = 54/240 (22%), Positives = 105/240 (43%), Gaps = 49/240 (20%)
Query: 355 RVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAEVE------GVIKIDDIDTEDVP 408
+ + N ++T + ++G TG+GKS++I L E G I +
Sbjct: 25 KALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQTIVGDYAIPANLKKIKE 84
Query: 409 LSKLRSNISIIPQDP--VLFSGTLRKNL------------DPFEKYPDYVLWTALQEVEL 454
+ +LR I ++ Q P LF T+ K++ + ++K P+ + L E +
Sbjct: 85 VKRLRKEIGLVFQFPEYQLFQETIEKDIAFGPVNLGENKQEAYKKVPELLKLVQLPEDYV 144
Query: 455 KDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATANVDPKTD---- 510
K E +G GQ++ + LA I + LVLDE T +DPK +
Sbjct: 145 KRSPFELSG--------------GQKRRVALAGIIAMDGNTLVLDEPTGGLDPKGEEDFI 190
Query: 511 ---LLIQRTIRKKFADCTVLTIAHRLHTIMD-SDKVLVMDSG--VAVVSSFGFFFSKDLI 564
+ + +K+ ++ + H + ++ +D+V+VM G +++ S F F +++L+
Sbjct: 191 NLFERLNKEYKKR-----IIMVTHNMDQVLRIADEVIVMHEGKVISIGSPFEIFSNQELL 245
>gnl|CDD|183226 PRK11607, potG, putrescine transporter ATP-binding subunit;
Provisional.
Length = 377
Score = 46.0 bits (109), Expect = 3e-05
Identities = 47/164 (28%), Positives = 79/164 (48%), Gaps = 19/164 (11%)
Query: 353 GPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAEVE----GVIKIDDIDTEDVP 408
G + ++++TI+ E ++G +G GKS+L+ LA E G I +D +D VP
Sbjct: 31 GQHAVDDVSLTIYKGEIFALLGASGCGKSTLLRM---LAGFEQPTAGQIMLDGVDLSHVP 87
Query: 409 LSKLRSNISIIPQDPVLFSG-TLRKNLDPFEKYPDYVLWTALQEVELKDMIMEGAGL-NM 466
+ I+++ Q LF T+ +N+ F D L + E+ + E GL +M
Sbjct: 88 --PYQRPINMMFQSYALFPHMTVEQNI-AFGLKQD-----KLPKAEIASRVNEMLGLVHM 139
Query: 467 TVYEGGT--NFSVGQRQLICLARAIVRNNVILVLDEATANVDPK 508
+ S GQRQ + LAR++ + +L+LDE +D K
Sbjct: 140 QEFAKRKPHQLSGGQRQRVALARSLAKRPKLLLLDEPMGALDKK 183
>gnl|CDD|226643 COG4175, ProV, ABC-type proline/glycine betaine transport system,
ATPase component [Amino acid transport and metabolism].
Length = 386
Score = 46.2 bits (110), Expect = 3e-05
Identities = 55/209 (26%), Positives = 97/209 (46%), Gaps = 22/209 (10%)
Query: 357 IKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAEV-EGVIKIDDIDTEDVPLSKLR-- 413
+ + ++ + E I+G +G+GKS+L+ + RL E G I +D D + ++LR
Sbjct: 44 VNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPTRGEILVDGKDIAKLSAAELREL 103
Query: 414 --SNISIIPQDPVLFSGTLRKNLDPFEKYPDYVLWTALQEVELKDM-IMEGAGLNMTVYE 470
IS++ Q L R L+ + V E E + + +E GL +
Sbjct: 104 RRKKISMVFQSFALLPH--RTVLENVA-FGLEVQGVPKAEREERALEALELVGLEGYADK 160
Query: 471 GGTNFSVGQRQLICLARAIVRNNVILVLDEATANVDP--KTD-----LLIQRTIRKKFAD 523
S G +Q + LARA+ + IL++DEA + +DP +T+ L +Q ++K
Sbjct: 161 YPNELSGGMQQRVGLARALANDPDILLMDEAFSALDPLIRTEMQDELLELQAKLKK---- 216
Query: 524 CTVLTIAHRLHTIMD-SDKVLVMDSGVAV 551
T++ I H L + D++ +M G V
Sbjct: 217 -TIVFITHDLDEALRIGDRIAIMKDGEIV 244
>gnl|CDD|182336 PRK10253, PRK10253, iron-enterobactin transporter ATP-binding
protein; Provisional.
Length = 265
Score = 45.0 bits (106), Expect = 5e-05
Identities = 39/163 (23%), Positives = 72/163 (44%), Gaps = 7/163 (4%)
Query: 356 VIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRL-AEVEGVIKIDDIDTEDVPLSKLRS 414
V +NL + I I+G G GKS+L+ + RL G + +D + ++
Sbjct: 22 VAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHIQHYASKEVAR 81
Query: 415 NISIIPQDPVLFSGTLRKNLDPFEKYPDYVLWTALQEVELKDMI---MEGAGLNMTVYEG 471
I ++ Q+ + L +YP L+T ++ E ++ + M+ G+ +
Sbjct: 82 RIGLLAQNATTPGDITVQELVARGRYPHQPLFTRWRK-EDEEAVTKAMQATGITHLADQS 140
Query: 472 GTNFSVGQRQLICLARAIVRNNVILVLDEATA--NVDPKTDLL 512
S GQRQ +A + + I++LDE T ++ + DLL
Sbjct: 141 VDTLSGGQRQRAWIAMVLAQETAIMLLDEPTTWLDISHQIDLL 183
>gnl|CDD|185067 PRK15112, PRK15112, antimicrobial peptide ABC system ATP-binding
protein SapF; Provisional.
Length = 267
Score = 45.2 bits (107), Expect = 5e-05
Identities = 53/214 (24%), Positives = 92/214 (42%), Gaps = 32/214 (14%)
Query: 357 IKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAE-VEGVIKIDDIDTEDVPLSKLRSN 415
+K L+ T+ + + I+G G+GKS+L + + E G + IDD S
Sbjct: 29 VKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGELLIDDHPLHFGDYSYRSQR 88
Query: 416 ISIIPQDPV-----------LFSGTLRKN--LDPFEKYPDYVLWTALQEVELKDMIMEGA 462
I +I QDP + LR N L+P ++ + + L++V L
Sbjct: 89 IRMIFQDPSTSLNPRQRISQILDFPLRLNTDLEPEQR--EKQIIETLRQVGL-------- 138
Query: 463 GLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATANVDPKT-----DLLIQRTI 517
L + GQ+Q + LARA++ +++ DEA A++D +L+++ +
Sbjct: 139 -LPDHASYYPHMLAPGQKQRLGLARALILRPKVIIADEALASLDMSMRSQLINLMLE--L 195
Query: 518 RKKFADCTVLTIAHRLHTIMDSDKVLVMDSGVAV 551
++K + H SD+VLVM G V
Sbjct: 196 QEKQGISYIYVTQHLGMMKHISDQVLVMHQGEVV 229
>gnl|CDD|183055 PRK11247, ssuB, aliphatic sulfonates transport ATP-binding subunit;
Provisional.
Length = 257
Score = 45.1 bits (107), Expect = 5e-05
Identities = 53/205 (25%), Positives = 91/205 (44%), Gaps = 31/205 (15%)
Query: 355 RVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAEVEGVIKIDDIDTEDVPLSKLRS 414
V+ L++ I + + +VGR+G GKS+L+ + L ++ PL++ R
Sbjct: 26 TVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSA----GELLAGTAPLAEARE 81
Query: 415 NISIIPQDPVLFSGTLRKNLDPFEKYPDYV------LW--TALQEVELKDMIMEGAGLNM 466
+ ++ QD L P++K D V W ALQ + GL
Sbjct: 82 DTRLMFQDARLL---------PWKKVIDNVGLGLKGQWRDAALQA-------LAAVGLAD 125
Query: 467 TVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATANVDPKTDLLIQRTIRKKFAD--C 524
E S GQ+Q + LARA++ +L+LDE +D T + +Q I +
Sbjct: 126 RANEWPAALSGGQKQRVALARALIHRPGLLLLDEPLGALDALTRIEMQDLIESLWQQHGF 185
Query: 525 TVLTIAHRL-HTIMDSDKVLVMDSG 548
TVL + H + + +D+VL+++ G
Sbjct: 186 TVLLVTHDVSEAVAMADRVLLIEEG 210
>gnl|CDD|185049 PRK15093, PRK15093, antimicrobial peptide ABC transporter
ATP-binding protein; Provisional.
Length = 330
Score = 45.6 bits (108), Expect = 5e-05
Identities = 61/262 (23%), Positives = 112/262 (42%), Gaps = 63/262 (24%)
Query: 341 IEFQNTNVRYLSGP-RVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAEVEGVIKI 399
IEF+ ++ G + + +++T+ E G+VG +G+GKS + AI + + +
Sbjct: 11 IEFKTSD-----GWVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDNWRVTA 65
Query: 400 DDIDTEDVPLSKLRS---------NISIIPQDPVLFSGTLRKNLDPFEKYPDYVL----- 445
D + +D+ L +L N+S+I Q+P + LDP E+ ++
Sbjct: 66 DRMRFDDIDLLRLSPRERRKLVGHNVSMIFQEP-------QSCLDPSERVGRQLMQNIPG 118
Query: 446 WT------------------ALQEVELKDM--IMEGAGLNMTVYEGGTNFSVGQRQLICL 485
WT L V +KD M +T G+ Q + +
Sbjct: 119 WTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDAMRSFPYELT---------EGECQKVMI 169
Query: 486 ARAIVRNNVILVLDEATANVDPKTDLLIQRTIRK--KFADCTVLTIAHRLHTIMD-SDKV 542
A A+ +L+ DE T ++P T I R + + + + T+L I+H L + +DK+
Sbjct: 170 AIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQNNNTTILLISHDLQMLSQWADKI 229
Query: 543 LVMDSGVAVVSSFGFFFSKDLI 564
V+ G V ++ SK+L+
Sbjct: 230 NVLYCGQTVETA----PSKELV 247
>gnl|CDD|227019 COG4674, COG4674, Uncharacterized ABC-type transport system, ATPase
component [General function prediction only].
Length = 249
Score = 44.2 bits (105), Expect = 7e-05
Identities = 54/227 (23%), Positives = 99/227 (43%), Gaps = 29/227 (12%)
Query: 341 IEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAEV-EGVIKI 399
+ +V + G + + +L+ ++ P E ++G GAGK++L+ I EG +
Sbjct: 6 LYLDGVSVSF-GGFKALNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTRPQEGEVLF 64
Query: 400 DDIDTEDVPLSKL------RSNISIIPQDPVLFSG-TLRKNLDPFEKYPDYVLWTAL--- 449
D D L+KL R+ I Q P +F T+R+NL+ V + +L
Sbjct: 65 DG----DTDLTKLPEHRIARAGIGRKFQKPTVFENLTVRENLELALNRDKSV-FASLFAR 119
Query: 450 ---QEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATANV- 505
+E D ++ GL S GQ+Q + + + ++ +L+LDE A +
Sbjct: 120 LRAEERRRIDELLATIGLGDERDRLAALLSHGQKQWLEIGMLLAQDPKLLLLDEPVAGMT 179
Query: 506 ---DPKTDLLIQRTIRKKFADCTVLTIAHRLHTIMD-SDKVLVMDSG 548
KT L++ K ++L + H + + + +DKV V+ G
Sbjct: 180 DAETEKTAELLKSLAGK----HSILVVEHDMGFVREIADKVTVLHEG 222
>gnl|CDD|224057 COG1134, TagH, ABC-type polysaccharide/polyol phosphate transport
system, ATPase component [Carbohydrate transport and
metabolism / Cell envelope biogenesis, outer membrane].
Length = 249
Score = 44.5 bits (106), Expect = 7e-05
Identities = 60/263 (22%), Positives = 102/263 (38%), Gaps = 58/263 (22%)
Query: 304 NHMISVKRLVEYTKLEPEGNLSPNYEDENEIWPVLGKIEFQNTNVRYLSGPRVIKNLNIT 363
+I V + + ++ E + S + EF +K+++
Sbjct: 1 MVVIKVSNVSKKFRIYHEKSYSLKKRLKGLAKGGRKVAEFW-----------ALKDISFE 49
Query: 364 IHPKEKIGIVGRTGAGKSSL---IAAIFRLAEVEGVIKIDDIDTEDV-PLSKL------- 412
I+ E++GI+G GAGKS+L IA I++ G +K+ T V PL +L
Sbjct: 50 IYKGERVGIIGHNGAGKSTLLKLIAGIYKPT--SGKVKV----TGKVAPLIELGAGFDPE 103
Query: 413 ---RSNISIIPQDPVLFSGTLRKNLDPFEKYPDYVLWTALQEVELKDMIMEGAGLNMTVY 469
R NI + L G RK +D E D I+E A L +
Sbjct: 104 LTGRENIYLR----GLILGLTRKEID-----------------EKVDEIIEFAELGDFID 142
Query: 470 EGGTNFSVGQRQLICLARAIVR--NNVILVLDEATANVDPK-TDLLIQRTIRKKFADCTV 526
+ +S G LA ++ IL+LDE A D + ++R + T+
Sbjct: 143 QPVKTYSSGMY--ARLAFSVATHVEPDILLLDEVLAVGDAAFQEKCLERLNELVEKNKTI 200
Query: 527 LTIAHRLHTIMD-SDKVLVMDSG 548
+ ++H L I D+ + ++ G
Sbjct: 201 VLVSHDLGAIKQYCDRAIWLEHG 223
>gnl|CDD|235150 PRK03695, PRK03695, vitamin B12-transporter ATPase; Provisional.
Length = 248
Score = 44.2 bits (105), Expect = 7e-05
Identities = 49/213 (23%), Positives = 88/213 (41%), Gaps = 32/213 (15%)
Query: 360 LNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAEVEGVIKIDDIDTEDVPLSKL---RSNI 416
L+ + E + +VG GAGKS+L+A + L G I+ E ++L R+ +
Sbjct: 15 LSAEVRAGEILHLVGPNGAGKSTLLARMAGLLPGSGSIQFAGQPLEAWSAAELARHRAYL 74
Query: 417 SIIPQDPVLFSGTLRKNLDPFEKY-----PDYVLWTALQEVE-LKDMIMEGAGLNMTVYE 470
S Q F + F+ Y PD T + V + + E GL+ +
Sbjct: 75 S--QQQTPPF------AMPVFQ-YLTLHQPDK---TRTEAVASALNEVAEALGLDDKLGR 122
Query: 471 GGTNFSVGQRQLICLARAIVR-------NNVILVLDEATANVDPKTDLLIQRTIRKKFAD 523
S G+ Q + LA +++ +L+LDE ++D + R + +
Sbjct: 123 SVNQLSGGEWQRVRLAAVVLQVWPDINPAGQLLLLDEPMNSLDVAQQAALDRLLS-ELCQ 181
Query: 524 C--TVLTIAHRL-HTIMDSDKVLVMDSGVAVVS 553
V+ +H L HT+ +D+V ++ G + S
Sbjct: 182 QGIAVVMSSHDLNHTLRHADRVWLLKQGKLLAS 214
>gnl|CDD|214640 smart00382, AAA, ATPases associated with a variety of cellular
activities. AAA - ATPases associated with a variety of
cellular activities. This profile/alignment only detects
a fraction of this vast family. The poorly conserved
N-terminal helix is missing from the alignment.
Length = 148
Score = 42.7 bits (100), Expect = 8e-05
Identities = 36/182 (19%), Positives = 56/182 (30%), Gaps = 60/182 (32%)
Query: 366 PKEKIGIVGRTGAGKSSLIAAIFRLAEVE--GVIKIDDIDTEDVPLSKLRSNISIIPQDP 423
P E I IVG G+GK++L A+ R GVI ID D + L +L
Sbjct: 1 PGEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLL---------- 50
Query: 424 VLFSGTLRKNLDPFEKYPDYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLI 483
+ V + S R +
Sbjct: 51 -----------------------------------------LIIVGGKKASGSGELRLRL 69
Query: 484 CLARAIVRNNVILVLDEATANVDPKTDLLIQRTIR-------KKFADCTVLTIAHRLHTI 536
LA A +L+LDE T+ +D + + L+ K + TV+ + +
Sbjct: 70 ALALARKLKPDVLILDEITSLLDAEQEALLLLLEELRLLLLLKSEKNLTVILTTNDEKDL 129
Query: 537 MD 538
Sbjct: 130 GP 131
>gnl|CDD|185016 PRK15056, PRK15056, manganese/iron transporter ATP-binding protein;
Provisional.
Length = 272
Score = 43.3 bits (102), Expect = 2e-04
Identities = 58/229 (25%), Positives = 96/229 (41%), Gaps = 43/229 (18%)
Query: 348 VRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIF---RLAEVEGVIKIDDIDT 404
V + +G +++ + T+ +VG G+GKS+L A+ RLA G I I T
Sbjct: 14 VTWRNGHTALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLAS--GKISILGQPT 71
Query: 405 EDVPLSKLRSN-ISIIPQD-------PVLFS-----------GTLRKNLDPFEKYPDYVL 445
L+ N ++ +PQ PVL G LR+ +K ++
Sbjct: 72 RQA----LQKNLVAYVPQSEEVDWSFPVLVEDVVMMGRYGHMGWLRRA----KKRDRQIV 123
Query: 446 WTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATANV 505
AL V++ + G S GQ++ + LARAI + +++LDE V
Sbjct: 124 TAALARVDMVEFRHRQIG----------ELSGGQKKRVFLARAIAQQGQVILLDEPFTGV 173
Query: 506 DPKTDLLIQRTIRKKFAD-CTVLTIAHRLHTIMDSDKVLVMDSGVAVVS 553
D KT+ I +R+ + T+L H L ++ + VM G + S
Sbjct: 174 DVKTEARIISLLRELRDEGKTMLVSTHNLGSVTEFCDYTVMVKGTVLAS 222
>gnl|CDD|182880 PRK10982, PRK10982, galactose/methyl galaxtoside transporter
ATP-binding protein; Provisional.
Length = 491
Score = 43.6 bits (103), Expect = 2e-04
Identities = 50/208 (24%), Positives = 99/208 (47%), Gaps = 19/208 (9%)
Query: 353 GPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRL-AEVEGVIKIDDIDTEDVPLSK 411
G + + N+N+ + P ++G GAGKS+L+ +F + + G I + D SK
Sbjct: 10 GVKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKDSGSILFQGKEI-DFKSSK 68
Query: 412 --LRSNISIIPQD-PVLFSGTLRKNLDPFEKYPDYVLWTALQEVELKDM------IMEGA 462
L + IS++ Q+ ++ ++ N+ +YP ++ V+ M I +
Sbjct: 69 EALENGISMVHQELNLVLQRSVMDNM-WLGRYPTKGMF-----VDQDKMYRDTKAIFDEL 122
Query: 463 GLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATANVDPKTDLLIQRTIRK-KF 521
+++ SV Q Q+I +A+A N I+++DE T+++ K + IRK K
Sbjct: 123 DIDIDPRAKVATLSVSQMQMIEIAKAFSYNAKIVIMDEPTSSLTEKEVNHLFTIIRKLKE 182
Query: 522 ADCTVLTIAHRLHTIMD-SDKVLVMDSG 548
C ++ I+H++ I D++ ++ G
Sbjct: 183 RGCGIVYISHKMEEIFQLCDEITILRDG 210
>gnl|CDD|184208 PRK13649, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 280
Score = 43.2 bits (102), Expect = 2e-04
Identities = 58/234 (24%), Positives = 114/234 (48%), Gaps = 31/234 (13%)
Query: 341 IEFQNTNVRYLSGP----RVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRL-AEVEG 395
I QN + Y +G R + ++N+TI +G TG+GKS+++ + L +G
Sbjct: 3 INLQNVSYTYQAGTPFEGRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQG 62
Query: 396 VIKIDDI----DTEDVPLSKLRSNISIIPQDP--VLFSGTLRKNL----DPFEKYPDYVL 445
+++DD +++ + ++R + ++ Q P LF T+ K++ F +
Sbjct: 63 SVRVDDTLITSTSKNKDIKQIRKKVGLVFQFPESQLFEETVLKDVAFGPQNFGVSQEEAE 122
Query: 446 WTALQEVELKDMIMEGAGLNMTVYEGGT-NFSVGQRQLICLARAIVRNNVILVLDEATAN 504
A +++ L G++ +++E S GQ + + +A + ILVLDE TA
Sbjct: 123 ALAREKLAL-------VGISESLFEKNPFELSGGQMRRVAIAGILAMEPKILVLDEPTAG 175
Query: 505 VDPK--TDLLIQRTIRKKF--ADCTVLTIAHRLHTIMD-SDKVLVMDSGVAVVS 553
+DPK +L+ T+ KK + T++ + H + + + +D V V++ G V+S
Sbjct: 176 LDPKGRKELM---TLFKKLHQSGMTIVLVTHLMDDVANYADFVYVLEKGKLVLS 226
>gnl|CDD|183080 PRK11300, livG, leucine/isoleucine/valine transporter ATP-binding
subunit; Provisional.
Length = 255
Score = 42.7 bits (101), Expect = 3e-04
Identities = 33/105 (31%), Positives = 54/105 (51%), Gaps = 17/105 (16%)
Query: 449 LQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATANVDPK 508
L+ V L + AG N + GQ++ + +AR +V IL+LDE A ++PK
Sbjct: 138 LERVGLLEHANRQAG----------NLAYGQQRRLEIARCMVTQPEILMLDEPAAGLNPK 187
Query: 509 --TDL--LIQRTIRKKFADCTVLTIAHRLHTIMD-SDKVLVMDSG 548
+L LI +R + + TVL I H + +M SD++ V++ G
Sbjct: 188 ETKELDELIAE-LRNEH-NVTVLLIEHDMKLVMGISDRIYVVNQG 230
>gnl|CDD|183133 PRK11432, fbpC, ferric transporter ATP-binding subunit;
Provisional.
Length = 351
Score = 43.2 bits (102), Expect = 3e-04
Identities = 60/215 (27%), Positives = 100/215 (46%), Gaps = 42/215 (19%)
Query: 355 RVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAEVEGVIKIDD----IDTEDVPLS 410
VI NLN+TI + ++G +G GK++ + RL V G+ K + ID EDV
Sbjct: 20 TVIDNLNLTIKQGTMVTLLGPSGCGKTT----VLRL--VAGLEKPTEGQIFIDGEDVTHR 73
Query: 411 KLRS-NISIIPQDPVLFSG-TLRKNLDPFEKYPDYVLWTALQEV---ELKDMIMEGAGLN 465
++ +I ++ Q LF +L +N+ Y L + V E K + E L
Sbjct: 74 SIQQRDICMVFQSYALFPHMSLGENVG-------YGL--KMLGVPKEERKQRVKEA--LE 122
Query: 466 MTVYEGGTN-----FSVGQRQLICLARAIVRNNVILVLDEATANVDPKTDLLIQRTIRKK 520
+ G + S GQ+Q + LARA++ +L+ DE +N+D ++R++R+K
Sbjct: 123 LVDLAGFEDRYVDQISGGQQQRVALARALILKPKVLLFDEPLSNLDAN----LRRSMREK 178
Query: 521 FA------DCTVLTIAH-RLHTIMDSDKVLVMDSG 548
+ T L + H + SD V+VM+ G
Sbjct: 179 IRELQQQFNITSLYVTHDQSEAFAVSDTVIVMNKG 213
>gnl|CDD|226124 COG3596, COG3596, Predicted GTPase [General function prediction
only].
Length = 296
Score = 42.9 bits (101), Expect = 3e-04
Identities = 20/53 (37%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
Query: 357 IKNLNITIHPKEKIGIVGRTGAGKSSLIAAIF--RLAEVEGVIKIDDIDTEDV 407
++ L +T + ++G TGAGKSSLI A+F + EV V DI T
Sbjct: 29 LRMLQLTEKEPVNVLLMGATGAGKSSLINALFQGEVKEVSKVGVGTDITTRLR 81
>gnl|CDD|188208 TIGR02323, CP_lyasePhnK, phosphonate C-P lyase system protein PhnK.
Members of this family are the PhnK protein of C-P
lyase systems for utilization of phosphonates. These
systems resemble phosphonatase-based systems in having a
three component ABC transporter, where TIGR01097 is the
permease, TIGR01098 is the phosphonates binding protein,
and TIGR02315 is the ATP-binding cassette (ABC) protein.
They differ, however, in having, typically, ten or more
additional genes, many of which are believed to form a
membrane-associated complex. This protein (PhnK) and the
adjacent-encoded PhnL resemble transporter ATP-binding
proteins but are suggested, based on mutatgenesis
studies, to be part of this complex rather than part of
a transporter per se [Central intermediary metabolism,
Phosphorus compounds].
Length = 253
Score = 42.5 bits (100), Expect = 3e-04
Identities = 53/229 (23%), Positives = 97/229 (42%), Gaps = 40/229 (17%)
Query: 353 GPRV-IKNLNITIHPKEKIGIVGRTGAGKSSLIAAIF-RLAEVEGVIKIDDIDTEDVPLS 410
G ++++ ++P E +GIVG +G+GKS+L+ + RLA G ++ L
Sbjct: 14 GGGKGCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPDHGTATYIMRSGAELELY 73
Query: 411 KL---------RSNISIIPQDP-------VLFSGTLRKNL-DPFEKYPDYVLWTA---LQ 450
+L R+ + Q+P V + + L ++ + TA L+
Sbjct: 74 QLSEAERRRLMRTEWGFVHQNPRDGLRMRVSAGANIGERLMAIGARHYGNIRATAQDWLE 133
Query: 451 EVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATANVDPKT- 509
EVE+ ++ + FS G +Q + +AR +V ++ +DE T +D
Sbjct: 134 EVEIDPTRID---------DLPRAFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQ 184
Query: 510 ----DLLIQRTIRKKFADCTVLTIAHRLHTI-MDSDKVLVMDSGVAVVS 553
DLL + +R V+ + H L + + ++LVM G V S
Sbjct: 185 ARLLDLL-RGLVRD--LGLAVIIVTHDLGVARLLAQRLLVMQQGRVVES 230
>gnl|CDD|213187 cd03220, ABC_KpsT_Wzt, ATP-binding cassette component of
polysaccharide transport system. The KpsT/Wzt ABC
transporter subfamily is involved in extracellular
polysaccharide export. Among the variety of
membrane-linked or extracellular polysaccharides
excreted by bacteria, only capsular polysaccharides,
lipopolysaccharides, and teichoic acids have been shown
to be exported by ABC transporters. A typical system is
made of a conserved integral membrane and an ABC. In
addition to these proteins, capsular polysaccharide
exporter systems require two 'accessory' proteins to
perform their function: a periplasmic (E.coli) or a
lipid-anchored outer membrane protein called OMA
(Neisseria meningitidis and Haemophilus influenza) and a
cytoplasmic membrane protein MPA2.
Length = 224
Score = 42.1 bits (100), Expect = 3e-04
Identities = 12/29 (41%), Positives = 21/29 (72%)
Query: 355 RVIKNLNITIHPKEKIGIVGRTGAGKSSL 383
+K+++ + E+IG++GR GAGKS+L
Sbjct: 36 WALKDVSFEVPRGERIGLIGRNGAGKSTL 64
>gnl|CDD|226628 COG4148, ModC, ABC-type molybdate transport system, ATPase
component [Inorganic ion transport and metabolism].
Length = 352
Score = 42.7 bits (101), Expect = 4e-04
Identities = 49/195 (25%), Positives = 99/195 (50%), Gaps = 22/195 (11%)
Query: 372 IVGRTGAGKSSLIAAIFRLAEV-EGVIKIDD---IDTE-DVPLSKLRSNISIIPQDPVLF 426
+ G +G+GK+SLI I L EG I+++ +D E + L + I + QD LF
Sbjct: 29 LFGPSGSGKTSLINMIAGLTRPDEGRIELNGRVLVDAEKGIFLPPEKRRIGYVFQDARLF 88
Query: 427 SG-TLRKNLDPFEKYPDYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICL 485
T+R NL Y +W +++ + D ++ G+ + S G++Q + +
Sbjct: 89 PHYTVRGNL-------RYGMWKSMRA-QF-DQLVALLGIEHLLDRYPGTLSGGEKQRVAI 139
Query: 486 ARAIVRNNVILVLDEATANVD-PKTDLLIQ--RTIRKKFADCTVLTIAHRLHTIMD-SDK 541
RA++ +L++DE A++D P+ ++ +R + + +L ++H L ++ +D+
Sbjct: 140 GRALLTAPELLLMDEPLASLDLPRKREILPYLERLRDEI-NIPILYVSHSLDEVLRLADR 198
Query: 542 VLVMDSGVAVVSSFG 556
V+V+++G V + G
Sbjct: 199 VVVLENG--KVKASG 211
>gnl|CDD|182528 PRK10535, PRK10535, macrolide transporter ATP-binding /permease
protein; Provisional.
Length = 648
Score = 42.8 bits (101), Expect = 4e-04
Identities = 44/195 (22%), Positives = 83/195 (42%), Gaps = 52/195 (26%)
Query: 341 IEFQNTNVRYLSGP---RVIKNLNITIHPKEKIGIVGRTGAGKSSLI----------AAI 387
+E ++ Y SG V+K +++ I+ E + IVG +G+GKS+L+ +
Sbjct: 5 LELKDIRRSYPSGEEQVEVLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKPTSGT 64
Query: 388 FRLAEVEGVIKIDDIDTEDVPLSKL-RSNISIIPQDPVLFSGTLRKNLDPFEKYPDYVLW 446
+R+A + + +D + L++L R + I F++Y
Sbjct: 65 YRVAGQD----VATLDADA--LAQLRREHFGFI-----------------FQRYHLLSHL 101
Query: 447 TALQEVEL---------------KDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVR 491
TA Q VE+ +++ GL V + S GQ+Q + +ARA++
Sbjct: 102 TAAQNVEVPAVYAGLERKQRLLRAQELLQRLGLEDRVEYQPSQLSGGQQQRVSIARALMN 161
Query: 492 NNVILVLDEATANVD 506
+++ DE T +D
Sbjct: 162 GGQVILADEPTGALD 176
>gnl|CDD|226952 COG4586, COG4586, ABC-type uncharacterized transport system, ATPase
component [General function prediction only].
Length = 325
Score = 42.4 bits (100), Expect = 5e-04
Identities = 47/226 (20%), Positives = 83/226 (36%), Gaps = 66/226 (29%)
Query: 357 IKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAEVEGVIKIDDIDTEDVPLSKLRSNI 416
+++++ I E +G +G GAGKS+ + K+ + +
Sbjct: 40 VQDISFEIPKGEIVGFLGANGAGKSTTL--------------------------KMLTGL 73
Query: 417 SIIPQDPVLFSGTLRKN-LDPFEKYPDYVLWTAL-----QEVELKDMIMEGAGLNMTVYE 470
++P SG +R N DPF + +Y+ L ++ ++ + +YE
Sbjct: 74 -LLPT-----SGKVRVNGKDPFRRREEYLRSIGLVMGQKLQLWWDLPALDSLEVLKLIYE 127
Query: 471 -GGTNF------------------------SVGQRQLICLARAIVRNNVILVLDEATANV 505
F S+GQR LA A++ +L LDE T +
Sbjct: 128 IPDDEFAERLDFLTEILDLEGFLKWPVRKLSLGQRMRAELAAALLHPPKVLFLDEPTVGL 187
Query: 506 DPKTDLLIQRTIRKKFA--DCTVLTIAHRLHTIMD-SDKVLVMDSG 548
D I+ +++ TVL H I D+VL++D G
Sbjct: 188 DVNAQANIREFLKEYNEERQATVLLTTHIFDDIATLCDRVLLIDQG 233
>gnl|CDD|233208 TIGR00956, 3a01205, Pleiotropic Drug Resistance (PDR) Family
protein. [Transport and binding proteins, Other].
Length = 1394
Score = 42.8 bits (101), Expect = 6e-04
Identities = 85/360 (23%), Positives = 144/360 (40%), Gaps = 64/360 (17%)
Query: 224 LVEEFDYHQDLHSSTWHLFVYTNMGFAYLIDFLCLLYLSTILISFFFFADIGGKVGLAVT 283
L F Y+ +S W F + + + F + +L F A G++
Sbjct: 657 LKLSFQYY---NSHKWRNF---GIIIGFTVFFFFV---YILLTEFNKGAKQKGEI----- 702
Query: 284 QTMTLMGVVQWAMRQAAEVENHMISVKRLVEYTKLEPEGNLSPNYEDENEIWPVLGKIEF 343
+ G ++ A + ++ ++ E + S + DE ++ G+ F
Sbjct: 703 -LVFRRGSLKRAKKAGETSASNKNDIEA-GEVLGSTDLTDESDDVNDEKDMEKESGEDIF 760
Query: 344 Q----NTNVRYLSGPRVI-KNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAE--VEGV 396
V+ RVI N++ + P ++G +GAGK++L+ LAE GV
Sbjct: 761 HWRNLTYEVKIKKEKRVILNNVDGWVKPGTLTALMGASGAGKTTLLNV---LAERVTTGV 817
Query: 397 IKIDDIDTEDVPL--SKLRSNISIIPQD----------PVLFSGTLR--KNLDPFEK--Y 440
I D PL S RS + QD + FS LR K++ EK Y
Sbjct: 818 ITGGDRLVNGRPLDSSFQRSIGYVQQQDLHLPTSTVRESLRFSAYLRQPKSVSKSEKMEY 877
Query: 441 PDYVLWTALQEVE-LKDMIM--EGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILV 497
+ V+ L E+E D ++ G GLN V QR+ + + +V +L+
Sbjct: 878 VEEVI--KLLEMESYADAVVGVPGEGLN-----------VEQRKRLTIGVELVAKPKLLL 924
Query: 498 -LDEATANVDPKTDLLIQRTIRKKFADC--TVL-TIAHRLHTIMDS-DKVLVMDSGVAVV 552
LDE T+ +D +T I + +R K AD +L TI + + D++L++ G V
Sbjct: 925 FLDEPTSGLDSQTAWSICKLMR-KLADHGQAILCTIHQPSAILFEEFDRLLLLQKGGQTV 983
Score = 39.3 bits (92), Expect = 0.006
Identities = 59/219 (26%), Positives = 94/219 (42%), Gaps = 31/219 (14%)
Query: 355 RVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAI------FRLAEVEGVIKIDDIDTEDVP 408
++K ++ I P E ++GR G+G S+L+ I F + VEGVI D I E++
Sbjct: 75 DILKPMDGLIKPGELTVVLGRPGSGCSTLLKTIASNTDGFHIG-VEGVITYDGITPEEI- 132
Query: 409 LSKLRSNISIIPQDPVLF-SGTLRKNLDPFE---KYPD--YVLWTALQEVE-LKDMIMEG 461
R ++ + V F T+ + LD F K P + + + + D+ M
Sbjct: 133 KKHYRGDVVYNAETDVHFPHLTVGETLD-FAARCKTPQNRPDGVSREEYAKHIADVYMAT 191
Query: 462 AGLNMT----VYEGGTNF----SVGQRQLICLARAIVRNNVILVLDEATANVDPKTDLLI 513
GL+ T V G +F S G+R+ + +A A + I D AT +D T L
Sbjct: 192 YGLSHTRNTKV---GNDFVRGVSGGERKRVSIAEASLGGAKIQCWDNATRGLDSATALEF 248
Query: 514 QRTIRK--KFADCTVL-TIAHRLHTIMDS-DKVLVMDSG 548
R ++ D T L I + DKV+V+ G
Sbjct: 249 IRALKTSANILDTTPLVAIYQCSQDAYELFDKVIVLYEG 287
>gnl|CDD|224166 COG1245, COG1245, Predicted ATPase, RNase L inhibitor (RLI) homolog
[General function prediction only].
Length = 591
Score = 42.7 bits (101), Expect = 6e-04
Identities = 48/188 (25%), Positives = 82/188 (43%), Gaps = 28/188 (14%)
Query: 363 TIHPKEKIGIVGRTGAGKSSLIAAIFRLAEVEGVIKIDDIDTEDVPLSKLRSNISIIPQD 422
I+ E IGI+G G GK++ + LA GVIK D+ ED+ +S IS
Sbjct: 363 EIYDGEVIGILGPNGIGKTTFVKL---LA---GVIKPDEGSEEDLKVSYKPQYISPDYDG 416
Query: 423 PV--LFSGTLRKNLDPFEKYPDYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQR 480
V L +R + T I++ L + S G+
Sbjct: 417 TVEDLLRSAIR------SAFGSSYFKTE---------IVKPLNLEDLLERPVDELSGGEL 461
Query: 481 QLICLARAIVRNNVILVLDEATANVDPKTDLLIQRTIRKKFA---DCTVLTIAHRLHTI- 536
Q + +A A+ R + +LDE +A +D + +++ + IR +F + T L + H ++ I
Sbjct: 462 QRVAIAAALSREADLYLLDEPSAYLDVEQRIIVAKVIR-RFIENNEKTALVVDHDIYMID 520
Query: 537 MDSDKVLV 544
SD+++V
Sbjct: 521 YVSDRLIV 528
>gnl|CDD|181906 PRK09493, glnQ, glutamine ABC transporter ATP-binding protein;
Reviewed.
Length = 240
Score = 41.2 bits (97), Expect = 7e-04
Identities = 45/184 (24%), Positives = 86/184 (46%), Gaps = 33/184 (17%)
Query: 341 IEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAEVE-GVIKI 399
IEF+N + + V+ N+++ I E + I+G +G+GKS+L+ I +L E+ G + +
Sbjct: 2 IEFKNVSKHFGPTQ-VLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIV 60
Query: 400 DDIDTEDVPLSKLRSNISIIPQDPVLFSGTLRKNLDPFEKYPDYVLWTALQEV------- 452
D + D + + +I Q+ +G + F+++ + TAL+ V
Sbjct: 61 DGLKVNDP-----KVDERLIRQE----AGMV------FQQFYLFPHLTALENVMFGPLRV 105
Query: 453 ------ELKDMIME---GAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATA 503
E + E GL + + S GQ+Q + +ARA+ +++ DE T+
Sbjct: 106 RGASKEEAEKQARELLAKVGLAERAHHYPSELSGGQQQRVAIARALAVKPKLMLFDEPTS 165
Query: 504 NVDP 507
+DP
Sbjct: 166 ALDP 169
>gnl|CDD|226592 COG4107, PhnK, ABC-type phosphonate transport system, ATPase
component [Inorganic ion transport and metabolism].
Length = 258
Score = 41.3 bits (97), Expect = 8e-04
Identities = 22/88 (25%), Positives = 41/88 (46%), Gaps = 11/88 (12%)
Query: 347 NVRYLSGPRV-IKNLNITIHPKEKIGIVGRTGAGKSSLIAAIF-RLAEVEGVIKIDDIDT 404
+ L GP ++++ ++P E +GIVG +G+GK++L+ I RL G + D
Sbjct: 11 GLSKLYGPGKGCRDVSFDLYPGEVLGIVGESGSGKTTLLKCISGRLTPDAGTVTYRMRDG 70
Query: 405 EDVPLSKL---------RSNISIIPQDP 423
+ L + R+ + Q+P
Sbjct: 71 QPRDLYTMSEAERRRLLRTEWGFVHQNP 98
>gnl|CDD|213234 cd03267, ABC_NatA_like, ATP-binding cassette domain of an
uncharacterized transporter similar in sequence to NatA.
NatA is the ATPase component of a bacterial ABC-type
Na+ transport system called NatAB, which catalyzes
ATP-dependent electrogenic Na+ extrusion without
mechanically coupled to proton or K+ uptake. NatB
possess six putative membrane spanning regions at its
C-terminus. In B. subtilis, NatAB is inducible by agents
such as ethanol and protonophores, which lower the
proton-motive force across the membrane. The closest
sequence similarity to NatA is exhibited by DrrA of the
two-component daunorubicin- and doxorubicin-efflux
system. Hence, the functional NatAB is presumably
assembled with two copies of the single ATP-binding
protein and the single integral membrane protein.
Length = 236
Score = 40.4 bits (95), Expect = 0.001
Identities = 52/219 (23%), Positives = 89/219 (40%), Gaps = 48/219 (21%)
Query: 355 RVIKNLNITIHPKEKIGIVGRTGAGKSSLI---AAIFRLAEVEGVIKIDDIDTEDVPLS- 410
+K ++ TI E +G +G GAGK++ + + + L G +++ + VP
Sbjct: 35 EALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGL--LQPTSGEVRVAGL----VPWKR 88
Query: 411 --KLRSNISIIPQD--------PVLFSGTLRK---NLDPFEKYPDYVLWTALQEV-ELKD 456
K I ++ PV+ S L +L P + + EL +
Sbjct: 89 RKKFLRRIGVVFGQKTQLWWDLPVIDSFYLLAAIYDLPPAR---------FKKRLDELSE 139
Query: 457 MIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATANVDPKTDLLIQRT 516
++ L+ V S+GQR +A A++ IL LDE T + D++ Q
Sbjct: 140 LLDLEELLDTPV----RQLSLGQRMRAEIAAALLHEPEILFLDEPTIGL----DVVAQEN 191
Query: 517 IRK------KFADCTVLTIAHRLHTIMD-SDKVLVMDSG 548
IR + TVL +H + I + +VLV+D G
Sbjct: 192 IRNFLKEYNRERGTTVLLTSHYMKDIEALARRVLVIDKG 230
>gnl|CDD|184198 PRK13638, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 271
Score = 40.8 bits (95), Expect = 0.001
Identities = 52/206 (25%), Positives = 88/206 (42%), Gaps = 9/206 (4%)
Query: 349 RYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSL---IAAIFRLAEVEGVIKIDDIDTE 405
RY P V+K LN+ G+VG G GKS+L ++ + R + + + +D
Sbjct: 10 RYQDEP-VLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKPLDYS 68
Query: 406 DVPLSKLRSNISIIPQDPVLFSGTLRKNLDPFEKYPDYVLWTALQEVELK-DMIMEGAGL 464
L LR ++ + QDP ++D + L E+ + D +
Sbjct: 69 KRGLLALRQQVATVFQDPE--QQIFYTDIDSDIAFSLRNLGVPEAEITRRVDEALTLVDA 126
Query: 465 NMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATANVDPKTDLLIQRTIRKKFADC 524
++ S GQ++ + +A A+V L+LDE TA +DP + IR+ A
Sbjct: 127 QHFRHQPIQCLSHGQKKRVAIAGALVLQARYLLLDEPTAGLDPAGRTQMIAIIRRIVAQG 186
Query: 525 TVLTI-AHRLHTIMD-SDKVLVMDSG 548
+ I +H + I + SD V V+ G
Sbjct: 187 NHVIISSHDIDLIYEISDAVYVLRQG 212
>gnl|CDD|183231 PRK11614, livF, leucine/isoleucine/valine transporter ATP-binding
subunit; Provisional.
Length = 237
Score = 40.2 bits (94), Expect = 0.001
Identities = 43/193 (22%), Positives = 84/193 (43%), Gaps = 30/193 (15%)
Query: 341 IEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIF-RLAEVEGVIKI 399
+ F + Y + + +++ I+ E + ++G GAGK++L+ + G I
Sbjct: 6 LSFDKVSAHY-GKIQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVF 64
Query: 400 DDIDTEDVPLSK-LRSNISIIPQDPVLFSG-TLRKNLDPFEKYPD-----------YVLW 446
D D D +K +R ++I+P+ +FS T+ +NL + + Y L+
Sbjct: 65 DGKDITDWQTAKIMREAVAIVPEGRRVFSRMTVEENLAMGGFFAERDQFQERIKWVYELF 124
Query: 447 TALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATANVD 506
L E ++ GT S G++Q++ + RA++ +L+LDE + +
Sbjct: 125 PRLHERRIQ--------------RAGT-MSGGEQQMLAIGRALMSQPRLLLLDEPSLGLA 169
Query: 507 PKTDLLIQRTIRK 519
P I TI +
Sbjct: 170 PIIIQQIFDTIEQ 182
>gnl|CDD|131377 TIGR02324, CP_lyasePhnL, phosphonate C-P lyase system protein PhnL.
Members of this family are the PhnL protein of C-P
lyase systems for utilization of phosphonates. These
systems resemble phosphonatase-based systems in having a
three component ABC transporter, where TIGR01097 is the
permease, TIGR01098 is the phosphonates binding protein,
and TIGR02315 is the ATP-binding cassette (ABC) protein.
They differ, however, in having, typically, ten or more
additional genes, many of which are believed to form a
membrane-associated C-P lysase complex. This protein
(PhnL) and the adjacent-encoded PhnK (TIGR02323)
resemble transporter ATP-binding proteins but are
suggested, based on mutatgenesis studies, to be part of
this C-P lyase complex rather than part of a transporter
per se.
Length = 224
Score = 40.1 bits (94), Expect = 0.001
Identities = 18/60 (30%), Positives = 32/60 (53%), Gaps = 1/60 (1%)
Query: 473 TNFSVGQRQLICLARAIVRNNVILVLDEATANVDPKTDLLIQRTIRKKFAD-CTVLTIAH 531
FS G++Q + +AR + + IL+LDE TA++D ++ I + A ++ I H
Sbjct: 148 ATFSGGEQQRVNIARGFIADYPILLLDEPTASLDAANRQVVVELIAEAKARGAALIGIFH 207
Score = 35.1 bits (81), Expect = 0.064
Identities = 12/34 (35%), Positives = 26/34 (76%)
Query: 356 VIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFR 389
V+KN+++T++ E + + G +GAGKS+L+ +++
Sbjct: 23 VLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYA 56
>gnl|CDD|206743 cd11383, YfjP, YfjP GTPase. The Era (E. coli Ras-like
protein)-like YfjP subfamily includes several
uncharacterized bacterial GTPases that are similar to
Era. They generally show sequence conservation in the
region between the Walker A and B motifs (G1 and G3 box
motifs), to the exclusion of other GTPases. Era is
characterized by a distinct derivative of the KH domain
(the pseudo-KH domain) which is located C-terminal to
the GTPase domain.
Length = 140
Score = 38.9 bits (91), Expect = 0.002
Identities = 14/28 (50%), Positives = 19/28 (67%), Gaps = 2/28 (7%)
Query: 371 GIVGRTGAGKSSLIAAIFR--LAEVEGV 396
G++G+TGAGKSSL A+F +A V
Sbjct: 1 GLMGKTGAGKSSLCNALFGTEVAAVGDR 28
>gnl|CDD|130252 TIGR01184, ntrCD, nitrate transport ATP-binding subunits C and D.
This model describes the ATP binding subunits of nitrate
transport in bacteria and archaea. This protein belongs
to the ATP-binding cassette (ABC) superfamily. It is
thought that the two subunits encoded by ntrC and ntrD
form the binding surface for interaction with ATP. This
model is restricted in identifying ATP binding subunit
associated with the nitrate transport. Nitrate
assimilation is aided by other proteins derived from the
operon which among others include products of ntrA - a
regulatory protein; ntrB - a hydropbobic transmembrane
permease and narB - a reductase [Transport and binding
proteins, Anions, Transport and binding proteins,
Other].
Length = 230
Score = 40.1 bits (94), Expect = 0.002
Identities = 49/200 (24%), Positives = 93/200 (46%), Gaps = 13/200 (6%)
Query: 357 IKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAE-VEGVIKID--DIDTEDVPLSKLR 413
+K +N+TI E I ++G +G GKS+L+ I LA+ G + ++ I +
Sbjct: 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQITEPGPDRMVVF 60
Query: 414 SNISIIPQDPVLFSGTLRKNLDPFEKYPDYVLWTALQEVELKDMIMEGAGLNMTVYEGGT 473
N S++P T+R+N+ L + + +++ I GL +
Sbjct: 61 QNYSLLPWL------TVRENIALAVDRVLPDLSKSERRAIVEEHI-ALVGLTEAADKRPG 113
Query: 474 NFSVGQRQLICLARAIVRNNVILVLDEATANVDPKTDLLIQRTIRK--KFADCTVLTIAH 531
S G +Q + +ARA+ +L+LDE +D T +Q + + + TVL + H
Sbjct: 114 QLSGGMKQRVAIARALSIRPKVLLLDEPFGALDALTRGNLQEELMQIWEEHRVTVLMVTH 173
Query: 532 RL-HTIMDSDKVLVMDSGVA 550
+ ++ SD+V+++ +G A
Sbjct: 174 DVDEALLLSDRVVMLTNGPA 193
>gnl|CDD|236947 PRK11650, ugpC, glycerol-3-phosphate transporter ATP-binding
subunit; Provisional.
Length = 356
Score = 40.2 bits (95), Expect = 0.002
Identities = 18/63 (28%), Positives = 31/63 (49%), Gaps = 1/63 (1%)
Query: 340 KIEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAEV-EGVIK 398
++ Q Y +VIK +++ + E I +VG +G GKS+L+ + L + G I
Sbjct: 3 GLKLQAVRKSYDGKTQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERITSGEIW 62
Query: 399 IDD 401
I
Sbjct: 63 IGG 65
Score = 33.7 bits (78), Expect = 0.29
Identities = 15/33 (45%), Positives = 21/33 (63%)
Query: 476 SVGQRQLICLARAIVRNNVILVLDEATANVDPK 508
S GQRQ + + RAIVR + + DE +N+D K
Sbjct: 136 SGGQRQRVAMGRAIVREPAVFLFDEPLSNLDAK 168
>gnl|CDD|237454 PRK13634, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 290
Score = 39.6 bits (93), Expect = 0.003
Identities = 58/235 (24%), Positives = 100/235 (42%), Gaps = 42/235 (17%)
Query: 341 IEFQNTNVRYLSGP----RVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAE-VEG 395
I FQ RY R + ++N++I + I+G TG+GKS+L+ + L + G
Sbjct: 3 ITFQKVEHRYQYKTPFERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSG 62
Query: 396 VIKIDD----IDTEDVPLSKLRSNISIIPQDP--VLFSGTLRKNLD--------PFEKYP 441
+ I + ++ L LR + I+ Q P LF T+ K++ E
Sbjct: 63 TVTIGERVITAGKKNKKLKPLRKKVGIVFQFPEHQLFEETVEKDICFGPMNFGVSEED-- 120
Query: 442 DYVLWTALQEVELKDMIMEGAGLNMTVYEGGT-NFSVGQRQLICLARAIVRNNVILVLDE 500
A Q+ ++MI E GL + S GQ + + +A + +LVLDE
Sbjct: 121 ------AKQKA--REMI-ELVGLPEELLARSPFELSGGQMRRVAIAGVLAMEPEVLVLDE 171
Query: 501 ATANVDPKTDLLIQRTIRKKFA------DCTVLTIAHRLHTIMD-SDKVLVMDSG 548
TA +DPK ++ + + F T + + H + +D+++VM G
Sbjct: 172 PTAGLDPKG----RKEMMEMFYKLHKEKGLTTVLVTHSMEDAARYADQIVVMHKG 222
>gnl|CDD|182182 PRK09984, PRK09984, phosphonate/organophosphate ester transporter
subunit; Provisional.
Length = 262
Score = 39.6 bits (92), Expect = 0.003
Identities = 39/187 (20%), Positives = 84/187 (44%), Gaps = 31/187 (16%)
Query: 355 RVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAEVEGVIKIDDIDTEDVPL----- 409
+ + +++ IH E + ++G +G+GKS+L L + G+I D + L
Sbjct: 18 QALHAVDLNIHHGEMVALLGPSGSGKSTL------LRHLSGLITGDKSAGSHIELLGRTV 71
Query: 410 ----------SKLRSNISIIPQDPVLFSG-TLRKNL-------DPFEKYPDYVLWTALQE 451
K R+N I Q L + ++ +N+ PF + W ++
Sbjct: 72 QREGRLARDIRKSRANTGYIFQQFNLVNRLSVLENVLIGALGSTPF--WRTCFSWFTREQ 129
Query: 452 VELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATANVDPKTDL 511
+ + G+ ++ + S GQ+Q + +ARA+++ +++ DE A++DP++
Sbjct: 130 KQRALQALTRVGMVHFAHQRVSTLSGGQQQRVAIARALMQQAKVILADEPIASLDPESAR 189
Query: 512 LIQRTIR 518
++ T+R
Sbjct: 190 IVMDTLR 196
>gnl|CDD|236997 PRK11831, PRK11831, putative ABC transporter ATP-binding protein
YrbF; Provisional.
Length = 269
Score = 39.4 bits (92), Expect = 0.003
Identities = 50/180 (27%), Positives = 80/180 (44%), Gaps = 30/180 (16%)
Query: 347 NVRYLSGPRVI-KNLNITIHPKEKI-GIVGRTGAGKSSLIAAI-FRLAEVEGVIKIDDID 403
V + G R I N+++T+ P+ KI I+G +G GK++L+ I ++A G I D
Sbjct: 12 GVSFTRGNRCIFDNISLTV-PRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEILFDG-- 68
Query: 404 TEDVP------LSKLRSNISIIPQDPVLFSGTLRKNLDPFEKYPDYVLW-----TALQEV 452
E++P L +R +S++ Q SG L +++ F+ V + T L
Sbjct: 69 -ENIPAMSRSRLYTVRKRMSMLFQ-----SGALFTDMNVFDN----VAYPLREHTQLPAP 118
Query: 453 ELKDMIM---EGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATANVDPKT 509
L +M E GL + S G + LARAI +++ DE DP T
Sbjct: 119 LLHSTVMMKLEAVGLRGAAKLMPSELSGGMARRAALARAIALEPDLIMFDEPFVGQDPIT 178
>gnl|CDD|183077 PRK11288, araG, L-arabinose transporter ATP-binding protein;
Provisional.
Length = 501
Score = 39.9 bits (94), Expect = 0.004
Identities = 25/77 (32%), Positives = 44/77 (57%), Gaps = 4/77 (5%)
Query: 475 FSVGQRQLICLARAIVRNNVILVLDEATANVD-PKTDLLIQRTIRKKFADCTV-LTIAHR 532
S+GQRQ++ +A+A+ RN ++ DE T+++ + + L R IR+ A+ V L ++HR
Sbjct: 141 LSIGQRQMVEIAKALARNARVIAFDEPTSSLSAREIEQLF-RVIRELRAEGRVILYVSHR 199
Query: 533 LHTIMD-SDKVLVMDSG 548
+ I D + V G
Sbjct: 200 MEEIFALCDAITVFKDG 216
Score = 28.7 bits (65), Expect = 9.4
Identities = 11/41 (26%), Positives = 24/41 (58%)
Query: 348 VRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIF 388
+ L GP + + ++ ++ E +G+ G GAG+S L+ ++
Sbjct: 260 LDGLKGPGLREPISFSVRAGEIVGLFGLVGAGRSELMKLLY 300
>gnl|CDD|236729 PRK10636, PRK10636, putative ABC transporter ATP-binding protein;
Provisional.
Length = 638
Score = 39.4 bits (92), Expect = 0.005
Identities = 20/46 (43%), Positives = 30/46 (65%), Gaps = 3/46 (6%)
Query: 341 IEFQNTNVRYLSGPRV-IKNLNITIHPKEKIGIVGRTGAGKSSLIA 385
I F + +R G RV + N TI+P +K+G+VG+ G GKS+L+A
Sbjct: 2 IVFSSLQIR--RGVRVLLDNATATINPGQKVGLVGKNGCGKSTLLA 45
Score = 34.4 bits (79), Expect = 0.20
Identities = 17/35 (48%), Positives = 24/35 (68%), Gaps = 5/35 (14%)
Query: 353 GPRVIKN---LNITIHPKEKIGIVGRTGAGKSSLI 384
G R+I + LN+ P +IG++GR GAGKS+LI
Sbjct: 323 GDRIILDSIKLNLV--PGSRIGLLGRNGAGKSTLI 355
>gnl|CDD|226635 COG4161, ArtP, ABC-type arginine transport system, ATPase component
[Amino acid transport and metabolism].
Length = 242
Score = 38.7 bits (90), Expect = 0.005
Identities = 47/189 (24%), Positives = 89/189 (47%), Gaps = 15/189 (7%)
Query: 341 IEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAEV--EGVIK 398
I+ N Y + + + ++ + E + ++G +GAGKSSL+ + L E+ G +
Sbjct: 3 IQLNGINCFYGAH-QALFDITLDCPEGETLVLLGPSGAGKSSLLR-VLNLLEMPRSGTLN 60
Query: 399 I--DDIDTEDVPLSK----LRSNISIIPQDPVLFSG-TLRKNLDPFEKYPDYVLWTALQE 451
I + D P K LR N+ ++ Q L+ T+++NL + P VL + +
Sbjct: 61 IAGNHFDFSKTPSDKAIRDLRRNVGMVFQQYNLWPHLTVQENL---IEAPCRVLGLSKDQ 117
Query: 452 VELKDM-IMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATANVDPKTD 510
+ +++ L + S GQ+Q + +ARA++ +L+ DE TA +DP+
Sbjct: 118 ALARAEKLLKRLRLKPYADRYPLHLSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEIT 177
Query: 511 LLIQRTIRK 519
I I++
Sbjct: 178 AQIVSIIKE 186
>gnl|CDD|223473 COG0396, sufC, Cysteine desulfurase activator ATPase
[Posttranslational modification, protein turnover,
chaperones].
Length = 251
Score = 38.7 bits (91), Expect = 0.005
Identities = 53/220 (24%), Positives = 90/220 (40%), Gaps = 28/220 (12%)
Query: 353 GPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAI-----FRLAEVEGVIKIDDIDTEDV 407
++K +N+T+ E I+G G+GKS+L I + + E E + +DI E
Sbjct: 16 KKEILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPKYEVTEGEILFDGEDI-LELS 74
Query: 408 PLSKLRSNISIIPQDPVLFSGT-----LRKNLDPFEKYPDYV------LWTALQEVELKD 456
P + R+ I + Q PV G LR ++ + L + + L +
Sbjct: 75 PDERARAGIFLAFQYPVEIPGVTNSDFLRAAMNARRGARGILPEFIKELKEKAELLGLDE 134
Query: 457 MIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATANVDPKTDLLIQRT 516
L V EG FS G+++ + + ++ + +LDE + +D ++
Sbjct: 135 EF-----LERYVNEG---FSGGEKKRNEILQLLLLEPKLAILDEPDSGLDIDALKIVAEG 186
Query: 517 IRK-KFADCTVLTIAH--RLHTIMDSDKVLVMDSGVAVVS 553
I + VL I H RL + DKV V+ G V S
Sbjct: 187 INALREEGRGVLIITHYQRLLDYIKPDKVHVLYDGRIVKS 226
>gnl|CDD|216791 pfam01926, MMR_HSR1, 50S ribosome-binding GTPase. The full-length
GTPase protein is required for the complete activity of
the protein of interacting with the 50S ribosome and
binding of both adenine and guanine nucleotides, with a
preference for guanine nucleotide.
Length = 117
Score = 36.9 bits (86), Expect = 0.006
Identities = 11/28 (39%), Positives = 18/28 (64%), Gaps = 2/28 (7%)
Query: 369 KIGIVGRTGAGKSSLIAAIF--RLAEVE 394
++ +VGR GKS+LI A+ ++A V
Sbjct: 1 RVALVGRPNVGKSTLINALTGAKVAIVS 28
>gnl|CDD|183280 PRK11701, phnK, phosphonate C-P lyase system protein PhnK;
Provisional.
Length = 258
Score = 38.4 bits (90), Expect = 0.007
Identities = 24/70 (34%), Positives = 40/70 (57%), Gaps = 5/70 (7%)
Query: 348 VRYLS---GPRV-IKNLNITIHPKEKIGIVGRTGAGKSSLIAAIF-RLAEVEGVIKIDDI 402
VR L+ GPR ++++ ++P E +GIVG +G+GK++L+ A+ RLA G +
Sbjct: 9 VRGLTKLYGPRKGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPDAGEVHYRMR 68
Query: 403 DTEDVPLSKL 412
D + L L
Sbjct: 69 DGQLRDLYAL 78
>gnl|CDD|163431 TIGR03719, ABC_ABC_ChvD, ATP-binding cassette protein, ChvD family.
Members of this protein family have two copies of the
ABC transporter ATP-binding cassette, but are found
outside the common ABC transporter operon structure that
features integral membrane permease proteins and
substrate-binding proteins encoded next to the
ATP-binding cassette (ABC domain) protein. The member
protein ChvD from Agrobacterium tumefaciens was
identified as both a candidate to interact with VirB8,
based on yeast two-hybrid analysis, and as an apparent
regulator of VirG. The general function of this protein
family is unknown.
Length = 552
Score = 38.8 bits (91), Expect = 0.008
Identities = 54/211 (25%), Positives = 101/211 (47%), Gaps = 49/211 (23%)
Query: 356 VIKNLNITIHPKEKIGIVGRTGAGKSSL--IAAIFRLAEVEGVIKIDDIDTEDVPLSKLR 413
++K+++++ P KIG++G GAGKS+L I A GV K + + E P ++
Sbjct: 20 ILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMA--------GVDK--EFNGEARPAPGIK 69
Query: 414 SNISIIPQDPVL-FSGTLRKN-----------LDPFE----KY--PDYVLWTALQE-VEL 454
+ +PQ+P L + T+R+N LD F K+ PD + L E EL
Sbjct: 70 --VGYLPQEPQLDPTKTVRENVEEGVAEIKDALDRFNEISAKFAEPDADMDALLAEQAEL 127
Query: 455 KDMI-----------MEGAGLNMTVYEGG---TNFSVGQRQLICLARAIVRNNVILVLDE 500
+++I +E A + T S G+R+ + L R ++ +L+LDE
Sbjct: 128 QEIIDAADAWDLDRKLEIAMDALRCPPWDADVTKLSGGERRRVALCRLLLSKPDMLLLDE 187
Query: 501 ATANVDPKTDLLIQRTIRKKFADCTVLTIAH 531
T ++D ++ +++ + +++ TV+ + H
Sbjct: 188 PTNHLDAESVAWLEQHL-QEYPG-TVVAVTH 216
Score = 36.8 bits (86), Expect = 0.031
Identities = 69/253 (27%), Positives = 107/253 (42%), Gaps = 75/253 (29%)
Query: 311 RLVEYTKLEPEGNLSPNYE---DENEIW----PVLGK--IEFQNTNVRYLSGPRV-IKNL 360
RL Y +L LS ++ + EI+ P LG IE +N + + G ++ I +L
Sbjct: 289 RLARYEEL-----LSQEFQKRNETAEIYIPPGPRLGDKVIEAENLSKGF--GDKLLIDDL 341
Query: 361 NITIHPKEKIGIVGRTGAGKSSLIAAIFRLAEVE-GVIKIDDIDTEDVPLSKLRSNISII 419
+ + P +G++G GAGKS+L I + + G IKI E V L+
Sbjct: 342 SFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQPDSGTIKIG----ETVKLA--------- 388
Query: 420 PQDPVLFSGTLRKNLDPFEKYPDYVLWTALQEV-ELKDMIMEG-AGLNMTVYEGGTNF-- 475
+ R LD P+ +W +E+ D+I G + Y G NF
Sbjct: 389 ------YVDQSRDALD-----PNKTVW---EEISGGLDIIQLGKREVPSRAYVGRFNFKG 434
Query: 476 ----------SVGQRQLICLARAIVRN-NVILVLDEATANVDPKTDLLIQRTIRK----- 519
S G+R + LA+ + NV+L LDE P DL ++ T+R
Sbjct: 435 SDQQKKVGQLSGGERNRVHLAKTLKSGGNVLL-LDE------PTNDLDVE-TLRALEEAL 486
Query: 520 -KFADCTVLTIAH 531
+FA C V+ I+H
Sbjct: 487 LEFAGCAVV-ISH 498
>gnl|CDD|236992 PRK11819, PRK11819, putative ABC transporter ATP-binding protein;
Reviewed.
Length = 556
Score = 38.6 bits (91), Expect = 0.008
Identities = 23/72 (31%), Positives = 40/72 (55%), Gaps = 14/72 (19%)
Query: 356 VIKNLNITIHPKEKIGIVGRTGAGKSSL--IAAIFRLAEVEGVIKIDDIDTEDVPLSKLR 413
++K+++++ P KIG++G GAGKS+L I A GV K + + E P ++
Sbjct: 22 ILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMA--------GVDK--EFEGEARPAPGIK 71
Query: 414 SNISIIPQDPVL 425
+ +PQ+P L
Sbjct: 72 --VGYLPQEPQL 81
Score = 37.0 bits (87), Expect = 0.028
Identities = 24/69 (34%), Positives = 39/69 (56%), Gaps = 13/69 (18%)
Query: 329 EDENEIW----PVLGK--IEFQNTNVRYLSGPRV-IKNLNITIHPKEKIGIVGRTGAGKS 381
+ NEI+ P LG IE +N + + G R+ I +L+ ++ P +GI+G GAGKS
Sbjct: 307 NETNEIFIPPGPRLGDKVIEAENLSKSF--GDRLLIDDLSFSLPPGGIVGIIGPNGAGKS 364
Query: 382 SLIAAIFRL 390
+L F++
Sbjct: 365 TL----FKM 369
>gnl|CDD|233665 TIGR01978, sufC, FeS assembly ATPase SufC. SufC is part of the SUF
system, shown in E. coli to consist of six proteins and
believed to act in Fe-S cluster formation during
oxidative stress. SufC forms a complex with SufB and
SufD. SufC belongs to the ATP-binding cassette
transporter family (pfam00005) but is no longer thought
to be part of a transporter. The complex is reported as
cytosolic (PMID:12554644) or associated with the
membrane (PMID:11943156). The SUF system also includes a
cysteine desulfurase (SufS, enhanced by SufE) and a
probable iron-sulfur cluster assembly scaffold protein,
SufA [Biosynthesis of cofactors, prosthetic groups, and
carriers, Other].
Length = 243
Score = 37.6 bits (88), Expect = 0.010
Identities = 53/220 (24%), Positives = 92/220 (41%), Gaps = 28/220 (12%)
Query: 355 RVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAEVE---GVIKIDDIDTEDV-PLS 410
++K +N+T+ E I+G G+GKS+L I E G I D ++ P
Sbjct: 14 EILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQDLLELEPDE 73
Query: 411 KLRSNISIIPQDPVLFSGT-----LR---------KNLDPFEKYPDYVLWTALQEVELKD 456
+ R+ + + Q P G LR + +P D++ L+ L
Sbjct: 74 RARAGLFLAFQYPEEIPGVSNLEFLRSALNARRSARGEEPL-DLLDFL--KLLKAK-LAL 129
Query: 457 MIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATANVDPKTDLLIQRT 516
+ M+ LN +V EG FS G+++ + + + + +LDE + +D ++
Sbjct: 130 LGMDEEFLNRSVNEG---FSGGEKKRNEILQMALLEPKLAILDEIDSGLDIDALKIVAEG 186
Query: 517 IRK-KFADCTVLTIAH--RLHTIMDSDKVLVMDSGVAVVS 553
I + + D + L I H RL + D V V+ G V S
Sbjct: 187 INRLREPDRSFLIITHYQRLLNYIKPDYVHVLLDGRIVKS 226
>gnl|CDD|184210 PRK13651, PRK13651, cobalt transporter ATP-binding subunit;
Provisional.
Length = 305
Score = 38.1 bits (89), Expect = 0.010
Identities = 48/228 (21%), Positives = 95/228 (41%), Gaps = 41/228 (17%)
Query: 355 RVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRL-----AEVEGVIKIDDIDTEDVPL 409
+ + N+++ I+ E I I+G+TG+GK++ I + L +E + K D +
Sbjct: 21 KALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTGTIEWIFK--DEKNKKKTK 78
Query: 410 SKLRSNISIIPQDP----VLFSGTLRKNLDPFEKYPDYVLWTALQEVELKDMI------- 458
K + ++ Q + +R+ + ++ +Y L+ E KD+I
Sbjct: 79 EKEKVLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLFEQTIE---KDIIFGPVSMG 135
Query: 459 -------------MEGAGLNMTVYEGGT-NFSVGQRQLICLARAIVRNNVILVLDEATAN 504
+E GL+ + + S GQ++ + LA + LV DE TA
Sbjct: 136 VSKEEAKKRAAKYIELVGLDESYLQRSPFELSGGQKRRVALAGILAMEPDFLVFDEPTAG 195
Query: 505 VDP---KTDLLIQRTIRKKFADCTVLTIAHRLHTIMD-SDKVLVMDSG 548
+DP K L I + K+ T++ + H L +++ + + + G
Sbjct: 196 LDPQGVKEILEIFDNLNKQGK--TIILVTHDLDNVLEWTKRTIFFKDG 241
>gnl|CDD|184037 PRK13409, PRK13409, putative ATPase RIL; Provisional.
Length = 590
Score = 38.3 bits (90), Expect = 0.011
Identities = 52/197 (26%), Positives = 89/197 (45%), Gaps = 42/197 (21%)
Query: 363 TIHPKEKIGIVGRTGAGKSSLIAAIFRLAEVEGVIKIDDIDTEDVPLSKLRSNISIIPQ- 421
I+ E IGIVG G GK++ LA GV+K D E +L+ IS PQ
Sbjct: 361 EIYEGEVIGIVGPNGIGKTTFAKL---LA---GVLKPD----EGEVDPELK--ISYKPQY 408
Query: 422 ---DPVLFSGT----LRKNLDPFEKYPDYVLWTALQEVELKDMIMEGAGLNMTVYEGG-T 473
D + GT LR D ++ + E I++ L + +
Sbjct: 409 IKPD---YDGTVEDLLRSITDDLG--------SSYYKSE----IIKPLQLE-RLLDKNVK 452
Query: 474 NFSVGQRQLICLARAIVRNNVILVLDEATANVDPKTDLLIQRTIRKKFA---DCTVLTIA 530
+ S G+ Q + +A + R+ + +LDE +A++D + L + + IR + A + T L +
Sbjct: 453 DLSGGELQRVAIAACLSRDADLYLLDEPSAHLDVEQRLAVAKAIR-RIAEEREATALVVD 511
Query: 531 HRLHTI-MDSDKVLVMD 546
H ++ I SD+++V +
Sbjct: 512 HDIYMIDYISDRLMVFE 528
Score = 29.8 bits (68), Expect = 5.2
Identities = 48/200 (24%), Positives = 88/200 (44%), Gaps = 41/200 (20%)
Query: 370 IGIVGRTGAGKSSLI---AAIFR--LAEVEGVIKIDDI-----DTE--DVPLSKLRSN-I 416
GI+G G GK++ + + L + E D++ TE + KL + I
Sbjct: 102 TGILGPNGIGKTTAVKILSGELIPNLGDYEEEPSWDEVLKRFRGTELQNY-FKKLYNGEI 160
Query: 417 SII--PQ--D--PVLFSGTLR---KNLDPFEKYPDYVLWTALQEVELKDMIMEGAGLNMT 467
++ PQ D P +F G +R K +D K + V + + L+++ L+
Sbjct: 161 KVVHKPQYVDLIPKVFKGKVRELLKKVDERGKLDEVV-----ERLGLENI------LDRD 209
Query: 468 VYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATANVDPKTDLLIQRTIRKKFADCTVL 527
+ + S G+ Q + +A A++R+ DE T+ +D + L + R IR+ VL
Sbjct: 210 I----SELSGGELQRVAIAAALLRDADFYFFDEPTSYLDIRQRLNVARLIRELAEGKYVL 265
Query: 528 TIAHRLHTIMD--SDKVLVM 545
+ H L ++D +D V +
Sbjct: 266 VVEHDL-AVLDYLADNVHIA 284
>gnl|CDD|215558 PLN03073, PLN03073, ABC transporter F family; Provisional.
Length = 718
Score = 38.3 bits (89), Expect = 0.011
Identities = 26/84 (30%), Positives = 38/84 (45%), Gaps = 15/84 (17%)
Query: 341 IEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAI-----------FR 389
I F + + Y GP + KNLN I +I +VG G GKS+++ I FR
Sbjct: 509 ISFSDASFGYPGGPLLFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGELQPSSGTVFR 568
Query: 390 LAEVEGVI----KIDDIDTEDVPL 409
A+V + +D +D PL
Sbjct: 569 SAKVRMAVFSQHHVDGLDLSSNPL 592
Score = 29.8 bits (67), Expect = 5.6
Identities = 13/49 (26%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Query: 336 PVLGKIEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLI 384
P + I +N ++ + G +I + ++T+ G+VGR G GK++ +
Sbjct: 173 PAIKDIHMENFSIS-VGGRDLIVDASVTLAFGRHYGLVGRNGTGKTTFL 220
Score = 29.1 bits (65), Expect = 8.2
Identities = 15/32 (46%), Positives = 20/32 (62%)
Query: 475 FSVGQRQLICLARAIVRNNVILVLDEATANVD 506
FS G R I LARA+ +L+LDE T ++D
Sbjct: 345 FSGGWRMRIALARALFIEPDLLLLDEPTNHLD 376
>gnl|CDD|182569 PRK10584, PRK10584, putative ABC transporter ATP-binding protein
YbbA; Provisional.
Length = 228
Score = 37.5 bits (87), Expect = 0.011
Identities = 46/191 (24%), Positives = 77/191 (40%), Gaps = 60/191 (31%)
Query: 356 VIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAEVEGVIKIDDIDTEDV-----PLS 410
++ + + + E I ++G +G+GKS+L+A + L DD + +V PL
Sbjct: 25 ILTGVELVVKRGETIALIGESGSGKSTLLAILAGL---------DDGSSGEVSLVGQPLH 75
Query: 411 K--------LRS-NISIIPQDPVLFSGTLRKNLDPFEKYPDYVLWTALQEVELKDMI--- 458
+ LR+ ++ + Q +L TL AL+ VEL ++
Sbjct: 76 QMDEEARAKLRAKHVGFVFQSFMLIP-TL----------------NALENVELPALLRGE 118
Query: 459 ------------MEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATANVD 506
+E GL + S G++Q + LARA +L DE T N+D
Sbjct: 119 SSRQSRNGAKALLEQLGLGKRLDHLPAQLSGGEQQRVALARAFNGRPDVLFADEPTGNLD 178
Query: 507 PKT-----DLL 512
+T DLL
Sbjct: 179 RQTGDKIADLL 189
>gnl|CDD|236861 PRK11147, PRK11147, ABC transporter ATPase component; Reviewed.
Length = 635
Score = 38.0 bits (89), Expect = 0.015
Identities = 16/47 (34%), Positives = 30/47 (63%), Gaps = 1/47 (2%)
Query: 339 GKIEFQNTNVRY-LSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLI 384
GKI F+ NV Y + G +++K+ + + +KI ++G G GK++L+
Sbjct: 316 GKIVFEMENVNYQIDGKQLVKDFSAQVQRGDKIALIGPNGCGKTTLL 362
Score = 37.2 bits (87), Expect = 0.022
Identities = 21/68 (30%), Positives = 36/68 (52%), Gaps = 16/68 (23%)
Query: 359 NLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAEVEGVIKIDD---IDTEDVPLSKLRSN 415
N + I E++ +VGR GAGKS+L+ + G + +DD I +D+ +++L+
Sbjct: 21 NAELHIEDNERVCLVGRNGAGKSTLMKIL------NGEVLLDDGRIIYEQDLIVARLQ-- 72
Query: 416 ISIIPQDP 423
QDP
Sbjct: 73 -----QDP 75
>gnl|CDD|182852 PRK10938, PRK10938, putative molybdenum transport ATP-binding
protein ModF; Provisional.
Length = 490
Score = 37.7 bits (88), Expect = 0.015
Identities = 19/47 (40%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
Query: 341 IEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAI 387
I N V Y P ++ NL+ ++P E IVG GAGKS+L++ I
Sbjct: 261 IVLNNGVVSYNDRP-ILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLI 306
Score = 37.7 bits (88), Expect = 0.018
Identities = 15/42 (35%), Positives = 27/42 (64%)
Query: 476 SVGQRQLICLARAIVRNNVILVLDEATANVDPKTDLLIQRTI 517
S GQ++L + RA+V++ +L+LDE +DP L++R +
Sbjct: 403 SWGQQRLALIVRALVKHPTLLILDEPLQGLDPLNRQLVRRFV 444
>gnl|CDD|226622 COG4138, BtuD, ABC-type cobalamin transport system, ATPase
component [Coenzyme metabolism].
Length = 248
Score = 36.7 bits (85), Expect = 0.019
Identities = 45/228 (19%), Positives = 87/228 (38%), Gaps = 34/228 (14%)
Query: 368 EKIGIVGRTGAGKSSLIAAIFRLAEVEGVIKIDDIDTEDVPLSKLRSNISIIPQD----- 422
E + +VG GAGKS+L+A + + G I+ E ++L + + + Q
Sbjct: 26 EILHLVGPNGAGKSTLLARMAGMTSGSGSIQFAGQPLEAWSATELARHRAYLSQQQTPPF 85
Query: 423 --PVLFSGTLRKNLDPFEKYPDYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQR 480
PV TL + PD L +V + L + + S G+
Sbjct: 86 AMPVWHYLTLHQ--------PDKTRTELLNDV--AGALALDDKLGRSTNQ----LSGGEW 131
Query: 481 QLICLARAIVR-------NNVILVLDEATANVDPKTDLLIQRTI-RKKFADCTVLTIAHR 532
Q + LA +++ +L+LDE ++D + R + ++ +H
Sbjct: 132 QRVRLAAVVLQITPDANPAGQLLLLDEPMNSLDVAQQSALDRLLSALCQQGLAIVMSSHD 191
Query: 533 L-HTIMDSDKVLVMDSGVAVVSSFGFFFSKDLIEGTVSAKVLSSRKRR 579
L HT+ + + ++ G + S ++++ V A+ RR
Sbjct: 192 LNHTLRHAHRAWLLKRGKLLASG----RREEVLTPPVLAQAYGMNFRR 235
>gnl|CDD|227118 COG4778, PhnL, ABC-type phosphonate transport system, ATPase
component [Inorganic ion transport and metabolism].
Length = 235
Score = 36.6 bits (85), Expect = 0.020
Identities = 19/60 (31%), Positives = 32/60 (53%), Gaps = 1/60 (1%)
Query: 473 TNFSVGQRQLICLARAIVRNNVILVLDEATANVDPKTDLLIQRTIR-KKFADCTVLTIAH 531
FS G++Q + +AR + + IL+LDE TA++D ++ IR K ++ I H
Sbjct: 151 ATFSGGEQQRVNIARGFIVDYPILLLDEPTASLDATNRAVVVELIREAKARGAALVGIFH 210
>gnl|CDD|182592 PRK10619, PRK10619, histidine/lysine/arginine/ornithine transporter
subunit; Provisional.
Length = 257
Score = 36.9 bits (85), Expect = 0.021
Identities = 45/175 (25%), Positives = 81/175 (46%), Gaps = 30/175 (17%)
Query: 356 VIKNLNITIHPKEKIGIVGRTGAGKSSLIAAI-FRLAEVEGVIKIDDIDTEDV------- 407
V+K +++ + + I I+G +G+GKS+ + I F EG I ++ V
Sbjct: 20 VLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTINLVRDKDGQL 79
Query: 408 ------PLSKLRSNISIIPQDPVLFSG-TLRKNLDPFEKYPDYVLWTALQEVELKDM--- 457
L LR+ ++++ Q L+S T+ +N+ + P VL + QE + +
Sbjct: 80 KVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENV---MEAPIQVLGLSKQEARERAVKYL 136
Query: 458 ----IMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATANVDPK 508
I E A V+ G GQ+Q + +ARA+ +L+ DE T+ +DP+
Sbjct: 137 AKVGIDERAQGKYPVHLSG-----GQQQRVSIARALAMEPEVLLFDEPTSALDPE 186
>gnl|CDD|234152 TIGR03265, PhnT2, putative 2-aminoethylphosphonate ABC transporter,
ATP-binding protein. This ABC transporter ATP-binding
protein is found in a number of genomes in operon-like
contexts strongly suggesting a substrate specificity for
2-aminoethylphosphonate (2-AEP). The characterized
PhnSTUV system is absent in the genomes in which this
system is found. These genomes encode systems for the
catabolism of 2-AEP, making the need for a
2-AEP-specific transporter likely [Transport and binding
proteins, Amino acids, peptides and amines].
Length = 353
Score = 36.6 bits (85), Expect = 0.030
Identities = 52/222 (23%), Positives = 91/222 (40%), Gaps = 38/222 (17%)
Query: 347 NVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAEVE-GVIKIDDIDTE 405
+ +K++++++ E + ++G +G GK++L+ I L G I D
Sbjct: 10 IRKRFGAFTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDIT 69
Query: 406 DVPLSKLRSNISIIPQDPVLFSGTLRKNLDPFEKYPDYVLWTALQEVE--LKDMIMEGAG 463
+P K + I+ Q LF NL T + LK+ M A
Sbjct: 70 RLPPQK--RDYGIVFQSYALFP-----NL------------TVADNIAYGLKNRGMGRAE 110
Query: 464 LNMTVYE-----GGTN--------FSVGQRQLICLARAIVRNNVILVLDEATANVDPKTD 510
+ V E G S GQ+Q + LARA+ + +L+LDE + +D +
Sbjct: 111 VAERVAELLDLVGLPGSERKYPGQLSGGQQQRVALARALATSPGLLLLDEPLSALDARVR 170
Query: 511 LLIQRTIRKKFADCTVLTI--AHRLHTIMD-SDKVLVMDSGV 549
++ IR+ V TI H + +D+++VM+ GV
Sbjct: 171 EHLRTEIRQLQRRLGVTTIMVTHDQEEALSMADRIVVMNHGV 212
>gnl|CDD|184132 PRK13547, hmuV, hemin importer ATP-binding subunit; Provisional.
Length = 272
Score = 36.3 bits (84), Expect = 0.031
Identities = 12/33 (36%), Positives = 23/33 (69%)
Query: 355 RVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAI 387
++++L++ I P ++GR GAGKS+L+ A+
Sbjct: 15 AILRDLSLRIEPGRVTALLGRNGAGKSTLLKAL 47
>gnl|CDD|188317 TIGR03415, ABC_choXWV_ATP, choline ABC transporter, ATP-binding
protein. Members of this protein family are the
ATP-binding subunit of a three-protein transporter. This
family belongs, more broadly, to the family of proline
and glycine-betaine transporters, but members have been
identified by direct characterization and by
bioinformatic means as choline transporters. Many
species have several closely-related members of this
family, probably with variable abilities to act
additionally on related quaternary amines [Transport and
binding proteins, Amino acids, peptides and amines].
Length = 382
Score = 36.3 bits (84), Expect = 0.037
Identities = 52/218 (23%), Positives = 100/218 (45%), Gaps = 46/218 (21%)
Query: 359 NLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAEV-EGVIKIDDIDTE------DVP-LS 410
N ++ I E ++G +G+GKS+L+ A+ L V G + + D D D L
Sbjct: 42 NASLDIEEGEICVLMGLSGSGKSTLLRAVNGLNPVSRGSVLVKDGDGSVDVANCDAATLR 101
Query: 411 KLRSN-ISIIPQDPVLFSGTLRKNLDPFEKYPDYVLW----TALQEVELKDMI---MEGA 462
+LR++ +S++ Q F+ L P+ + V + + + E + + +E
Sbjct: 102 RLRTHRVSMVFQQ---FA------LLPWRTVEENVAFGLEMQGMPKAERRKRVDEQLELV 152
Query: 463 GL----NMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATANVDP------KTDLL 512
GL + E S G +Q + LARA IL++DE + +DP + +LL
Sbjct: 153 GLAQWADRKPGE----LSGGMQQRVGLARAFATEAPILLMDEPFSALDPLIRTQLQDELL 208
Query: 513 -IQRTIRKKFADCTVLTIAHRLHTIMD-SDKVLVMDSG 548
+Q ++K T++ ++H L + +++ +M+ G
Sbjct: 209 ELQSKLKK-----TIVFVSHDLDEALKIGNRIAIMEGG 241
>gnl|CDD|184128 PRK13541, PRK13541, cytochrome c biogenesis protein CcmA;
Provisional.
Length = 195
Score = 35.2 bits (81), Expect = 0.045
Identities = 41/192 (21%), Positives = 83/192 (43%), Gaps = 23/192 (11%)
Query: 347 NVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAE-VEGVIKIDDIDTE 405
+++ + + +L+IT P I G G GKSSL+ I + + G I + +
Sbjct: 6 QLQFNIEQKNLFDLSITFLPSAITYIKGANGCGKSSLLRMIAGIMQPSSGNIYYKNCNIN 65
Query: 406 DVP---LSKLRSNISIIPQDPVLFSGTLRKNLDPFEKYPDYV--LWTALQEVELKDMIME 460
++ + + N+ + T+ +NL + + + L+ A+ +L D+
Sbjct: 66 NIAKPYCTYIGHNLGL------KLEMTVFENLKFWSEIYNSAETLYAAIHYFKLHDL--- 116
Query: 461 GAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATANVDPKT-DLLIQRTIRK 519
L+ Y + S G ++++ +AR I + + +LDE N+ + DLL + K
Sbjct: 117 ---LDEKCY----SLSSGMQKIVAIARLIACQSDLWLLDEVETNLSKENRDLLNNLIVMK 169
Query: 520 KFADCTVLTIAH 531
+ VL +H
Sbjct: 170 ANSGGIVLLSSH 181
>gnl|CDD|226961 COG4598, HisP, ABC-type histidine transport system, ATPase
component [Amino acid transport and metabolism].
Length = 256
Score = 35.9 bits (83), Expect = 0.047
Identities = 44/183 (24%), Positives = 88/183 (48%), Gaps = 18/183 (9%)
Query: 340 KIEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAE-VEGVIK 398
+E ++ + RY V+K +++ + + I I+G +G+GKS+ + I L + G I+
Sbjct: 6 ALEVEDLHKRY-GEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSIR 64
Query: 399 ID--------DIDTEDVP-----LSKLRSNISIIPQDPVLFSGTLRKNLDPFEKYPDYVL 445
++ D D + P L +LR+ + ++ Q L+S L+ + P +VL
Sbjct: 65 VNGEEIRLKRDKDGQLKPADKRQLQRLRTRLGMVFQHFNLWSH--MTVLENVIEAPVHVL 122
Query: 446 WTALQE-VELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATAN 504
+ E +E + + G+ + S GQ+Q + +ARA+ +++ DE T+
Sbjct: 123 GVSKAEAIERAEKYLAKVGIAEKADAYPAHLSGGQQQRVAIARALAMEPEVMLFDEPTSA 182
Query: 505 VDP 507
+DP
Sbjct: 183 LDP 185
>gnl|CDD|234395 TIGR03918, GTP_HydF, [FeFe] hydrogenase H-cluster maturation GTPase
HydF. This model describes the family of the [Fe]
hydrogenase maturation protein HypF as characterized in
Chlamydomonas reinhardtii and found, in an operon with
radical SAM proteins HydE and HydG, in numerous
bacteria. It has GTPase activity, can bind an 4Fe-4S
cluster, and is essential for hydrogenase activity
[Protein fate, Protein modification and repair].
Length = 391
Score = 36.0 bits (84), Expect = 0.049
Identities = 13/20 (65%), Positives = 14/20 (70%)
Query: 370 IGIVGRTGAGKSSLIAAIFR 389
IGI GR AGKSSLI A+
Sbjct: 9 IGIFGRRNAGKSSLINALTG 28
>gnl|CDD|182778 PRK10851, PRK10851, sulfate/thiosulfate transporter subunit;
Provisional.
Length = 353
Score = 35.8 bits (83), Expect = 0.061
Identities = 26/79 (32%), Positives = 42/79 (53%), Gaps = 9/79 (11%)
Query: 476 SVGQRQLICLARAIVRNNVILVLDEATANVDPKTDLLIQRTIRK-----KFADCTVLTIA 530
S GQ+Q + LARA+ IL+LDE +D + ++R +R+ KF T + +
Sbjct: 138 SGGQKQRVALARALAVEPQILLLDEPFGALDAQVRKELRRWLRQLHEELKF---TSVFVT 194
Query: 531 HRLHTIMD-SDKVLVMDSG 548
H M+ +D+V+VM G
Sbjct: 195 HDQEEAMEVADRVVVMSQG 213
>gnl|CDD|215599 PLN03140, PLN03140, ABC transporter G family member; Provisional.
Length = 1470
Score = 36.0 bits (83), Expect = 0.074
Identities = 54/202 (26%), Positives = 99/202 (49%), Gaps = 29/202 (14%)
Query: 372 IVGRTGAGKSSL---IAAIFRLAEVEGVIKIDDIDTEDVPLSKL-----RSNI---SIIP 420
++G +GAGK++L +A +EG I+I + +++ +++I +
Sbjct: 911 LMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKKQETFARISGYCEQNDIHSPQVTV 970
Query: 421 QDPVLFSGTLR--KNLDPFEK--YPDYVLWTALQEVE-LKDMIMEGAGLNMTVYEGGTNF 475
++ +++S LR K + EK + D V+ L E++ LKD I+ GL G T
Sbjct: 971 RESLIYSAFLRLPKEVSKEEKMMFVDEVM--ELVELDNLKDAIV---GL-----PGVTGL 1020
Query: 476 SVGQRQLICLARAIVRNNVILVLDEATANVDPKTDLLIQRTIRKKF--ADCTVLTIAHRL 533
S QR+ + +A +V N I+ +DE T+ +D + ++ RT+R V TI
Sbjct: 1021 STEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPS 1080
Query: 534 HTIMDS-DKVLVMDSGVAVVSS 554
I ++ D++L+M G V+ S
Sbjct: 1081 IDIFEAFDELLLMKRGGQVIYS 1102
>gnl|CDD|184131 PRK13546, PRK13546, teichoic acids export protein ATP-binding
subunit; Provisional.
Length = 264
Score = 34.8 bits (80), Expect = 0.091
Identities = 42/182 (23%), Positives = 75/182 (41%), Gaps = 23/182 (12%)
Query: 357 IKNLNITIHPKEKIGIVGRTGAGKSSLIAAI-FRLAEVEGVIKIDDIDTEDVPLSKLRSN 415
+ ++++ + + IG+VG G+GKS+L I L+ G + +
Sbjct: 40 LDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLSPTVGKVDRN-------------GE 86
Query: 416 ISIIPQDPVLFSGTLRKNLDPFEKYPDYVLWTALQEVELKDM---IMEGAGLNMTVYEGG 472
+S+I S L L E +L + E+K M I+E + L +Y+
Sbjct: 87 VSVIA-----ISAGLSGQLTGIENIEFKMLCMGFKRKEIKAMTPKIIEFSELGEFIYQPV 141
Query: 473 TNFSVGQRQLICLARAIVRNNVILVLDEATANVDPK-TDLLIQRTIRKKFADCTVLTIAH 531
+S G R + + I N ILV+DEA + D + + K + T+ ++H
Sbjct: 142 KKYSSGMRAKLGFSINITVNPDILVIDEALSVGDQTFAQKCLDKIYEFKEQNKTIFFVSH 201
Query: 532 RL 533
L
Sbjct: 202 NL 203
>gnl|CDD|184129 PRK13543, PRK13543, cytochrome c biogenesis protein CcmA;
Provisional.
Length = 214
Score = 34.4 bits (79), Expect = 0.099
Identities = 41/162 (25%), Positives = 68/162 (41%), Gaps = 15/162 (9%)
Query: 360 LNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAEVE-GVIKIDDIDTEDVPLSKLRSNISI 418
L+ + E + + G GAGK++L+ + L VE G I+ID S+ + +
Sbjct: 30 LDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHVESGQIQIDGKTATRGDRSRFMAYLGH 89
Query: 419 IPQDPVLFSGTLRKNLDPFEKYPDYVLWTALQEVELKDMIMEG-AGLNMTVYEGG--TNF 475
+P L+ +L E + L K M A + + YE
Sbjct: 90 LP--------GLKADLSTLE---NLHFLCGLHGRRAKQMPGSALAIVGLAGYEDTLVRQL 138
Query: 476 SVGQRQLICLARAIVRNNVILVLDEATANVDPKTDLLIQRTI 517
S GQ++ + LAR + + +LDE AN+D + L+ R I
Sbjct: 139 SAGQKKRLALARLWLSPAPLWLLDEPYANLDLEGITLVNRMI 180
>gnl|CDD|182993 PRK11144, modC, molybdate transporter ATP-binding protein;
Provisional.
Length = 352
Score = 34.5 bits (80), Expect = 0.13
Identities = 61/198 (30%), Positives = 101/198 (51%), Gaps = 28/198 (14%)
Query: 372 IVGRTGAGKSSLIAAIFRLAEV-EGVIKIDD---IDTE-DVPLSKLRSNISIIPQDPVLF 426
I GR+GAGK+SLI AI L +G I ++ D E + L + I + QD LF
Sbjct: 29 IFGRSGAGKTSLINAISGLTRPQKGRIVLNGRVLFDAEKGICLPPEKRRIGYVFQDARLF 88
Query: 427 SG-TLRKNLDPFEKYPDYVLWTALQEVELKDMIMEGAGLN--MTVYEGGTNFSVGQRQLI 483
+R NL +Y A V D I+ G+ + Y G + S G++Q +
Sbjct: 89 PHYKVRGNL----RYG-----MAKSMVAQFDKIVALLGIEPLLDRYPG--SLSGGEKQRV 137
Query: 484 CLARAIVRNNVILVLDEATANVD-P-KTDLL--IQRTIRKKFADCTVLTIAHRLHTIMD- 538
+ RA++ +L++DE A++D P K +LL ++R R+ + +L ++H L I+
Sbjct: 138 AIGRALLTAPELLLMDEPLASLDLPRKRELLPYLERLARE--INIPILYVSHSLDEILRL 195
Query: 539 SDKVLVMDSGVAVVSSFG 556
+D+V+V++ G V +FG
Sbjct: 196 ADRVVVLEQG--KVKAFG 211
>gnl|CDD|222160 pfam13476, AAA_23, AAA domain.
Length = 204
Score = 33.7 bits (77), Expect = 0.15
Identities = 10/33 (30%), Positives = 16/33 (48%), Gaps = 1/33 (3%)
Query: 355 RVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAI 387
K+L I I G G+GK++++ AI
Sbjct: 8 GSFKDLEIDFSKG-LTLIYGPNGSGKTTILDAI 39
>gnl|CDD|236755 PRK10762, PRK10762, D-ribose transporter ATP binding protein;
Provisional.
Length = 501
Score = 34.6 bits (80), Expect = 0.15
Identities = 22/77 (28%), Positives = 38/77 (49%), Gaps = 3/77 (3%)
Query: 348 VRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIF-RLAEVEGVIKIDDIDTED 406
V LSGP V +++ T+ E +G+ G GAG++ L+ ++ L G + +D +
Sbjct: 260 VDNLSGPGV-NDVSFTLRKGEILGVSGLMGAGRTELMKVLYGALPRTSGYVTLDGHEVVT 318
Query: 407 V-PLSKLRSNISIIPQD 422
P L + I I +D
Sbjct: 319 RSPQDGLANGIVYISED 335
Score = 34.6 bits (80), Expect = 0.16
Identities = 24/76 (31%), Positives = 44/76 (57%), Gaps = 4/76 (5%)
Query: 476 SVGQRQLICLARAIVRNNVILVLDEAT-ANVDPKTDLLIQRTIRK-KFADCTVLTIAHRL 533
S+G++Q++ +A+ + + ++++DE T A D +T+ L R IR+ K ++ I+HRL
Sbjct: 143 SIGEQQMVEIAKVLSFESKVIIMDEPTDALTDTETESLF-RVIRELKSQGRGIVYISHRL 201
Query: 534 HTIMD-SDKVLVMDSG 548
I + D V V G
Sbjct: 202 KEIFEICDDVTVFRDG 217
>gnl|CDD|182980 PRK11124, artP, arginine transporter ATP-binding subunit;
Provisional.
Length = 242
Score = 33.8 bits (78), Expect = 0.15
Identities = 48/180 (26%), Positives = 84/180 (46%), Gaps = 21/180 (11%)
Query: 341 IEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAEV--EGVIK 398
I+ N Y + + + ++ + E + ++G +GAGKSSL+ + L E+ G +
Sbjct: 3 IQLNGINCFYGAH-QALFDITLDCPQGETLVLLGPSGAGKSSLLR-VLNLLEMPRSGTLN 60
Query: 399 I--DDIDTEDVPLSK----LRSNISIIPQD----PVLFSGTLRKNLDPFEKYPDYVLWTA 448
I + D P K LR N+ ++ Q P L T+++NL E P VL +
Sbjct: 61 IAGNHFDFSKTPSDKAIRELRRNVGMVFQQYNLWPHL---TVQQNL--IEA-PCRVLGLS 114
Query: 449 LQEVELKDM-IMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATANVDP 507
+ + ++E L + S GQ+Q + +ARA++ +L+ DE TA +DP
Sbjct: 115 KDQALARAEKLLERLRLKPYADRFPLHLSGGQQQRVAIARALMMEPQVLLFDEPTAALDP 174
>gnl|CDD|206646 cd00880, Era_like, E. coli Ras-like protein (Era)-like GTPase. The
Era (E. coli Ras-like protein)-like family includes
several distinct subfamilies (TrmE/ThdF, FeoB, YihA
(EngB), Era, and EngA/YfgK) that generally show sequence
conservation in the region between the Walker A and B
motifs (G1 and G3 box motifs), to the exclusion of other
GTPases. TrmE is ubiquitous in bacteria and is a
widespread mitochondrial protein in eukaryotes, but is
absent from archaea. The yeast member of TrmE family,
MSS1, is involved in mitochondrial translation;
bacterial members are often present in
translation-related operons. FeoB represents an unusual
adaptation of GTPases for high-affinity iron (II)
transport. YihA (EngB) family of GTPases is typified by
the E. coli YihA, which is an essential protein involved
in cell division control. Era is characterized by a
distinct derivative of the KH domain (the pseudo-KH
domain) which is located C-terminal to the GTPase
domain. EngA and its orthologs are composed of two
GTPase domains and, since the sequences of the two
domains are more similar to each other than to other
GTPases, it is likely that an ancient gene duplication,
rather than a fusion of evolutionarily distinct GTPases,
gave rise to this family.
Length = 161
Score = 33.4 bits (77), Expect = 0.16
Identities = 9/19 (47%), Positives = 11/19 (57%)
Query: 371 GIVGRTGAGKSSLIAAIFR 389
I GR GKSSL+ A+
Sbjct: 1 AIFGRPNVGKSSLLNALLG 19
>gnl|CDD|226459 COG3950, COG3950, Predicted ATP-binding protein involved in
virulence [General function prediction only].
Length = 440
Score = 34.5 bits (79), Expect = 0.16
Identities = 24/112 (21%), Positives = 38/112 (33%), Gaps = 16/112 (14%)
Query: 355 RVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAI-----------FRLAEVEGVIKIDDID 403
R NL+IT E IVG G+GK++++ AI L I++DDI+
Sbjct: 12 RCFLNLDITFGESETTIIVGPNGSGKTTVLDAIRNALNKFIDFFIYLRFKSLKIELDDIE 71
Query: 404 TEDVPLSK---LRSNISIIPQDPVLFSGTLRKNLDPFEKY--PDYVLWTALQ 450
+ S + + + T KN + L
Sbjct: 72 LCIMSQSNPTVAVAVVEYENDKKRTWVLTKNKNKELDVDKVDEILNKLGILM 123
>gnl|CDD|234628 PRK00093, PRK00093, GTP-binding protein Der; Reviewed.
Length = 435
Score = 34.3 bits (80), Expect = 0.17
Identities = 14/38 (36%), Positives = 19/38 (50%), Gaps = 5/38 (13%)
Query: 355 RVIKNLNITIHPKE-----KIGIVGRTGAGKSSLIAAI 387
+++ L E KI I+GR GKSSLI A+
Sbjct: 156 AILEELPEEEEEDEEDEPIKIAIIGRPNVGKSSLINAL 193
>gnl|CDD|213237 cd03270, ABC_UvrA_I, ATP-binding cassette domain I of the excision
repair protein UvrA. Nucleotide excision repair in
eubacteria is a process that repairs DNA damage by the
removal of a 12-13-mer oligonucleotide containing the
lesion. Recognition and cleavage of the damaged DNA is a
multistep ATP-dependent reaction that requires the UvrA,
UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases,
with UvrA having two ATP binding sites, which have the
characteristic signature of the family of ABC proteins,
and UvrB having one ATP binding site that is
structurally related to that of helicases.
Length = 226
Score = 33.8 bits (78), Expect = 0.17
Identities = 59/216 (27%), Positives = 95/216 (43%), Gaps = 22/216 (10%)
Query: 351 LSGPRV--IKNLNITIHPKEKIGIVGRTGAGKSSL----IAAIFRLAEVEGVIK-----I 399
+ G R +KN+++ I + + I G +G+GKSSL I A + VE + +
Sbjct: 3 VRGAREHNLKNVDVDIPRNKLVVITGVSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFL 62
Query: 400 DDIDTEDVP-LSKLRSNISIIPQDPVLFSGTLRKNLDPFEKYPDY--VLWTALQEVELKD 456
+D DV + L I+I D S R + + DY +L+ + E
Sbjct: 63 GQMDKPDVDSIEGLSPAIAI---DQKTTSRNPRSTVGTVTEIYDYLRLLFARVGIRERLG 119
Query: 457 MIMEGAGLN-MTVYEGGTNFSVGQRQLICLARAIVRN--NVILVLDEATANVDPK-TDLL 512
+++ GL +T+ S G+ Q I LA I V+ VLDE + + P+ D L
Sbjct: 120 FLVD-VGLGYLTLSRSAPTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHPRDNDRL 178
Query: 513 IQRTIRKKFADCTVLTIAHRLHTIMDSDKVLVMDSG 548
I+ R + TVL + H TI +D V+ + G
Sbjct: 179 IETLKRLRDLGNTVLVVEHDEDTIRAADHVIDIGPG 214
>gnl|CDD|237894 PRK15064, PRK15064, ABC transporter ATP-binding protein;
Provisional.
Length = 530
Score = 34.5 bits (80), Expect = 0.18
Identities = 14/44 (31%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Query: 356 VIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIF-RLAEVEGVIK 398
+ KNLN+ + E++ I+G G GK++L+ + L G +K
Sbjct: 334 LFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELEPDSGTVK 377
Score = 32.6 bits (75), Expect = 0.62
Identities = 20/55 (36%), Positives = 30/55 (54%), Gaps = 12/55 (21%)
Query: 485 LARAIVRNNVILVLDEATANVDPKT-----DLLIQRTIRKKFADCTVLTIAHRLH 534
LA+A+ N IL+LDE T N+D T D+L +R + T++ I+H H
Sbjct: 166 LAQALFSNPDILLLDEPTNNLDINTIRWLEDVLNER-------NSTMIIISHDRH 213
>gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication,
recombination, and repair].
Length = 908
Score = 34.4 bits (79), Expect = 0.18
Identities = 14/37 (37%), Positives = 19/37 (51%), Gaps = 4/37 (10%)
Query: 372 IVGRTGAGKSSLIAAI----FRLAEVEGVIKIDDIDT 404
IVG GAGKSS++ AI + G +DD+
Sbjct: 30 IVGPNGAGKSSILDAITFALYGKTPRLGAFSLDDLIR 66
>gnl|CDD|182893 PRK11000, PRK11000, maltose/maltodextrin transporter ATP-binding
protein; Provisional.
Length = 369
Score = 34.2 bits (79), Expect = 0.19
Identities = 19/55 (34%), Positives = 32/55 (58%), Gaps = 1/55 (1%)
Query: 358 KNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAEV-EGVIKIDDIDTEDVPLSK 411
K++N+ IH E + VG +G GKS+L+ I L ++ G + I + DVP ++
Sbjct: 20 KDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFIGEKRMNDVPPAE 74
Score = 32.7 bits (75), Expect = 0.47
Identities = 25/81 (30%), Positives = 44/81 (54%), Gaps = 4/81 (4%)
Query: 476 SVGQRQLICLARAIVRNNVILVLDEATANVDP--KTDLLIQRTIRKKFADCTVLTIAHRL 533
S GQRQ + + R +V + +LDE +N+D + + I+ + K T++ + H
Sbjct: 135 SGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQ 194
Query: 534 HTIMD-SDKVLVMDSG-VAVV 552
M +DK++V+D+G VA V
Sbjct: 195 VEAMTLADKIVVLDAGRVAQV 215
>gnl|CDD|234200 TIGR03411, urea_trans_UrtD, urea ABC transporter, ATP-binding
protein UrtD. Members of this protein family are ABC
transporter ATP-binding subunits associated with urea
transport and metabolism. This protein is found in a
conserved five-gene transport operon typically found
adjacent to urease genes. It was shown in Cyanobacteria
that disruption leads to the loss of high-affinity urea
transport activity [Transport and binding proteins,
Amino acids, peptides and amines].
Length = 242
Score = 33.7 bits (78), Expect = 0.22
Identities = 51/216 (23%), Positives = 99/216 (45%), Gaps = 31/216 (14%)
Query: 353 GPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAEV-EGVIKIDDIDTEDVPLSK 411
G + + +L++ + P E I+G GAGK++++ I EG + D L+
Sbjct: 14 GFKALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPDEGSVLFGGTD-----LTG 68
Query: 412 L------RSNISIIPQDPVLFSG-TLRKNLDPFEKYPDYVLWTAL-----QEVELK-DMI 458
L R+ I Q P +F T+ +NL+ D ++ +L E + + + +
Sbjct: 69 LPEHQIARAGIGRKFQKPTVFENLTVFENLELALP-RDKSVFASLFFRLSAEEKDRIEEV 127
Query: 459 MEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATANV-DPKT----DLLI 513
+E GL S GQ+Q + + ++++ +L+LDE A + D +T +LL
Sbjct: 128 LETIGLADEADRLAGLLSHGQKQWLEIGMLLMQDPKLLLLDEPVAGMTDEETEKTAELL- 186
Query: 514 QRTIRKKFADCTVLTIAHRLHTIMD-SDKVLVMDSG 548
+++ K +V+ + H + + +DKV V+ G
Sbjct: 187 -KSLAGK---HSVVVVEHDMEFVRSIADKVTVLHQG 218
>gnl|CDD|213207 cd03240, ABC_Rad50, ATP-binding cassette domain of Rad50. The
catalytic domains of Rad50 are similar to the
ATP-binding cassette of ABC transporters, but are not
associated with membrane-spanning domains. The conserved
ATP-binding motifs common to Rad50 and the ABC
transporter family include the Walker A and Walker B
motifs, the Q loop, a histidine residue in the switch
region, a D-loop, and a conserved LSGG sequence. This
conserved sequence, LSGG, is the most specific and
characteristic motif of this family and is thus known as
the ABC signature sequence.
Length = 204
Score = 33.3 bits (77), Expect = 0.23
Identities = 31/168 (18%), Positives = 48/168 (28%), Gaps = 72/168 (42%)
Query: 372 IVGRTGAGKSSLIAAIF---------------------RLAEVEGVIKIDDIDTEDVPLS 410
IVG+ GAGK+++I A+ R EV +K+ + +
Sbjct: 27 IVGQNGAGKTTIIEALKYALTGELPPNSKGGAHDPKLIREGEVRAQVKLAFENANGKKYT 86
Query: 411 KLRS-----NISIIPQDPVLFSGTLRKNLDPFEKYPDYVLWTALQEVELKDMIMEGAGLN 465
RS N+ Q E +++ G
Sbjct: 87 ITRSLAILENVIFCHQG------------------------------ESNWPLLDMRG-- 114
Query: 466 MTVYEGGTNFSVGQRQLICLARAIVRNNV------ILVLDEATANVDP 507
S G++ L L + IL LDE T N+D
Sbjct: 115 --------RCSGGEKVLASLIIRLALAETFGSNCGILALDEPTTNLDE 154
>gnl|CDD|183056 PRK11248, tauB, taurine transporter ATP-binding subunit;
Provisional.
Length = 255
Score = 33.5 bits (77), Expect = 0.25
Identities = 48/188 (25%), Positives = 87/188 (46%), Gaps = 22/188 (11%)
Query: 353 GPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAEVE-GVIKIDDIDTEDVPLSK 411
G ++++N+T+ E + ++G +G GK++L+ I + G I +D E +
Sbjct: 13 GKPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLDGKPVEGPGAER 72
Query: 412 --LRSNISIIP----QDPVLFSGTLRKNLDPFEKYPDYVLWTALQEVELKDMIMEGAGLN 465
+ N ++P QD V F L ++ ++ L A Q ++ + EGA
Sbjct: 73 GVVFQNEGLLPWRNVQDNVAFGLQLA-GVEKMQR-----LEIAHQMLKKVGL--EGAE-K 123
Query: 466 MTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATANVDPKTDLLIQRTIRKKFADC- 524
+++ S GQRQ + +ARA+ N +L+LDE +D T +Q + K + +
Sbjct: 124 RYIWQ----LSGGQRQRVGIARALAANPQLLLLDEPFGALDAFTREQMQTLLLKLWQETG 179
Query: 525 -TVLTIAH 531
VL I H
Sbjct: 180 KQVLLITH 187
>gnl|CDD|145542 pfam02456, Adeno_IVa2, Adenovirus IVa2 protein. IVa2 protein can
interact with the adenoviral packaging signal and that
this interaction involves DNA sequences that have
previously been demonstrated to be required for
packaging. During the course of lytic infection, the
adenovirus major late promoter (MLP) is induced to high
levels after replication of viral DNA has started. IVa2
is a transcriptional activator of the major late
promoter.
Length = 370
Score = 33.9 bits (78), Expect = 0.26
Identities = 17/45 (37%), Positives = 23/45 (51%), Gaps = 3/45 (6%)
Query: 344 QNTNVRYLSGPRVIKNLNITIHPKEKIGIV-GRTGAGKSSLIAAI 387
N RYL + +LN + P IG+V G TG GKS L+ +
Sbjct: 65 LNEASRYLRPDGELPSLNYGLQPV--IGVVYGPTGCGKSQLLRNL 107
>gnl|CDD|213199 cd03232, ABCG_PDR_domain2, Second domain of the pleiotropic drug
resistance-like (PDR) subfamily G of ATP-binding
cassette transporters. The pleiotropic drug resistance
(PDR) is a well-described phenomenon occurring in fungi
and shares several similarities with processes in
bacteria and higher eukaryotes. This PDR subfamily
represents domain I of its (ABC-IM)2 organization. ABC
transporters are a large family of proteins involved in
the transport of a wide variety of different compounds
including sugars, ions, peptides, and more complex
organic molecules. The nucleotide binding domain shows
the highest similarity between all members of the
family. ABC transporters are a subset of nucleotide
hydrolases that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing proteins.
Length = 192
Score = 33.0 bits (76), Expect = 0.26
Identities = 23/77 (29%), Positives = 39/77 (50%), Gaps = 5/77 (6%)
Query: 476 SVGQRQLICLARAIVRNNVILVLDEATANVDPKTDLLIQRTIRKKFADC--TVL-TIAHR 532
SV QR+ + + + IL LDE T+ +D + I R ++ K AD +L TI
Sbjct: 110 SVEQRKRLTIGVELAAKPSILFLDEPTSGLDSQAAYNIVRFLK-KLADSGQAILCTIHQP 168
Query: 533 LHTIMDS-DKVLVMDSG 548
+I + D++L++ G
Sbjct: 169 SASIFEKFDRLLLLKRG 185
>gnl|CDD|219856 pfam08477, Miro, Miro-like protein. Mitochondrial Rho proteins
(Miro-1, and Miro-2), are atypical Rho GTPases. They
have a unique domain organisation, with tandem
GTP-binding domains and two EF hand domains (pfam00036),
that may bind calcium. They are also larger than
classical small GTPases. It has been proposed that they
are involved in mitochondrial homeostasis and apoptosis.
Length = 116
Score = 32.0 bits (73), Expect = 0.28
Identities = 8/22 (36%), Positives = 15/22 (68%)
Query: 369 KIGIVGRTGAGKSSLIAAIFRL 390
K+ ++G G+GKSSL++ +
Sbjct: 1 KVVVIGDKGSGKSSLLSQLVGG 22
>gnl|CDD|214372 CHL00131, ycf16, sulfate ABC transporter protein; Validated.
Length = 252
Score = 33.1 bits (76), Expect = 0.35
Identities = 56/222 (25%), Positives = 95/222 (42%), Gaps = 44/222 (19%)
Query: 356 VIKNLNITIHPKEKIGIVGRTGAGKSSL---IAAIFRLAEVEGVIKIDDIDTEDVPLSKL 412
++K LN++I+ E I+G G+GKS+L IA +EG I D+ +
Sbjct: 22 ILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKILEGDILFKGESILDLE-PEE 80
Query: 413 RSNISIIP--QDPVLFSGT-----LR------------KNLDPFEKYPDYVLWTALQEVE 453
R+++ I Q P+ G LR LDP E ++ L+ V
Sbjct: 81 RAHLGIFLAFQYPIEIPGVSNADFLRLAYNSKRKFQGLPELDPLEFLE--IINEKLKLVG 138
Query: 454 LKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATANVDPKTDLLI 513
M+ + L+ V EG FS G+++ + + + ++ + +LDE + +D D L
Sbjct: 139 -----MDPSFLSRNVNEG---FSGGEKKRNEILQMALLDSELAILDETDSGLD--IDAL- 187
Query: 514 QRTIRK---KFADCT--VLTIAH--RLHTIMDSDKVLVMDSG 548
+ I + K ++ I H RL + D V VM +G
Sbjct: 188 -KIIAEGINKLMTSENSIILITHYQRLLDYIKPDYVHVMQNG 228
>gnl|CDD|213205 cd03238, ABC_UvrA, ATP-binding cassette domain of the excision
repair protein UvrA. Nucleotide excision repair in
eubacteria is a process that repairs DNA damage by the
removal of a 12-13-mer oligonucleotide containing the
lesion. Recognition and cleavage of the damaged DNA is a
multistep ATP-dependent reaction that requires the UvrA,
UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases,
with UvrA having two ATP binding sites, which have the
characteristic signature of the family of ABC proteins,
and UvrB having one ATP binding site that is
structurally related to that of helicases.
Length = 176
Score = 32.3 bits (74), Expect = 0.42
Identities = 36/198 (18%), Positives = 74/198 (37%), Gaps = 50/198 (25%)
Query: 357 IKNLNITIHPKEKI-GIVGRTGAGKSSLIAAIFRLAEVEGVIKIDDIDTEDVPLSKLRSN 415
++NL+++I P + + G +G+GKS+L+ ++L S
Sbjct: 11 LQNLDVSI-PLNVLVVVTGVSGSGKSTLVNEGL----------------YASGKARLISF 53
Query: 416 ISIIPQDPVLFSGTLRKNLDPFEKYPDYVLWTALQEVELKDMIMEGAGLN-MTVYEGGTN 474
+ ++ ++F L+ +D GL +T+ + +
Sbjct: 54 LPKFSRNKLIFIDQLQFLID--------------------------VGLGYLTLGQKLST 87
Query: 475 FSVGQRQLICLARAIVRN--NVILVLDEATANVDPKTDLLIQRTIRKKFADC--TVLTIA 530
S G+ Q + LA + + +LDE + + + + I K D TV+ I
Sbjct: 88 LSGGELQRVKLASELFSEPPGTLFILDEPSTGLHQQDINQLLEVI-KGLIDLGNTVILIE 146
Query: 531 HRLHTIMDSDKVLVMDSG 548
H L + +D ++ G
Sbjct: 147 HNLDVLSSADWIIDFGPG 164
>gnl|CDD|181965 PRK09580, sufC, cysteine desulfurase ATPase component; Reviewed.
Length = 248
Score = 32.8 bits (75), Expect = 0.43
Identities = 13/47 (27%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
Query: 341 IEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAI 387
+ ++ +V + +++ LN+ + P E I+G G+GKS+L A +
Sbjct: 2 LSIKDLHVS-VEDKAILRGLNLEVRPGEVHAIMGPNGSGKSTLSATL 47
>gnl|CDD|224082 COG1160, COG1160, Predicted GTPases [General function prediction
only].
Length = 444
Score = 32.9 bits (76), Expect = 0.45
Identities = 16/40 (40%), Positives = 20/40 (50%), Gaps = 7/40 (17%)
Query: 355 RVIKNLNITIHPKE-------KIGIVGRTGAGKSSLIAAI 387
V++ L +E KI I+GR GKSSLI AI
Sbjct: 159 AVLELLPPDEEEEEEEETDPIKIAIIGRPNVGKSSLINAI 198
>gnl|CDD|205733 pfam13555, AAA_29, P-loop containing region of AAA domain.
Length = 60
Score = 29.8 bits (68), Expect = 0.49
Identities = 9/16 (56%), Positives = 13/16 (81%)
Query: 372 IVGRTGAGKSSLIAAI 387
+ G +G+GKS+LI AI
Sbjct: 26 LTGPSGSGKSTLIDAI 41
>gnl|CDD|219014 pfam06414, Zeta_toxin, Zeta toxin. This family consists of several
bacterial zeta toxin proteins. Zeta toxin is thought to
be part of a postregulational killing system in
bacteria. It relies on antitoxin/toxin systems that
secure stable inheritance of low and medium copy number
plasmids during cell division and kill cells that have
lost the plasmid.
Length = 191
Score = 32.2 bits (74), Expect = 0.50
Identities = 12/46 (26%), Positives = 21/46 (45%), Gaps = 1/46 (2%)
Query: 355 RVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAEVEGVIKID 400
R+ + P + + G+ GAGK+ L A+ V++ID
Sbjct: 1 RLFSDKPPQERPV-AVLLGGQPGAGKTELARALLEELGGGNVVRID 45
>gnl|CDD|182906 PRK11022, dppD, dipeptide transporter ATP-binding subunit;
Provisional.
Length = 326
Score = 32.4 bits (74), Expect = 0.60
Identities = 19/78 (24%), Positives = 38/78 (48%), Gaps = 9/78 (11%)
Query: 355 RVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAEVEGVIKIDDIDTEDVPLSKLR- 413
R + ++ ++ E +GIVG +G+GKS AI L + G + + ++ L ++
Sbjct: 21 RAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQRISE 80
Query: 414 --------SNISIIPQDP 423
+ +++I QDP
Sbjct: 81 KERRNLVGAEVAMIFQDP 98
>gnl|CDD|221983 pfam13207, AAA_17, AAA domain.
Length = 114
Score = 30.7 bits (69), Expect = 0.63
Identities = 16/36 (44%), Positives = 21/36 (58%), Gaps = 5/36 (13%)
Query: 369 KIGIVGRTGAGKSSLIAAIFRLAEVEG--VIKIDDI 402
I I G G+GKS+L +LAE G VI +DD+
Sbjct: 1 IILITGPPGSGKSTLAK---KLAEKLGIPVISLDDL 33
>gnl|CDD|206682 cd01895, EngA2, EngA2 GTPase contains the second domain of EngA.
This EngA2 subfamily CD represents the second GTPase
domain of EngA and its orthologs, which are composed of
two adjacent GTPase domains. Since the sequences of the
two domains are more similar to each other than to other
GTPases, it is likely that an ancient gene duplication,
rather than a fusion of evolutionarily distinct GTPases,
gave rise to this family. Although the exact function of
these proteins has not been elucidated, studies have
revealed that the E. coli EngA homolog, Der, and
Neisseria gonorrhoeae EngA are essential for cell
viability. A recent report suggests that E. coli Der
functions in ribosome assembly and stability.
Length = 174
Score = 31.6 bits (73), Expect = 0.65
Identities = 11/19 (57%), Positives = 14/19 (73%)
Query: 369 KIGIVGRTGAGKSSLIAAI 387
KI I+GR GKSSL+ A+
Sbjct: 4 KIAIIGRPNVGKSSLLNAL 22
>gnl|CDD|215634 PLN03211, PLN03211, ABC transporter G-25; Provisional.
Length = 659
Score = 32.5 bits (74), Expect = 0.78
Identities = 47/212 (22%), Positives = 93/212 (43%), Gaps = 46/212 (21%)
Query: 364 IHPKEKIGIVGRTGAGKSSLIAAI---FRLAEVEGVIKIDDIDTEDVPLSKLRSNISIIP 420
P E + ++G +G+GKS+L+ A+ + G I ++ P ++ +
Sbjct: 91 ASPGEILAVLGPSGSGKSTLLNALAGRIQGNNFTGTILANN----RKPTKQILKRTGFVT 146
Query: 421 QDPVLFSG-TLRKNLD--PFEKYPDYVLWTALQEVELKDMIMEGAGL----NMTVYEGGT 473
QD +L+ T+R+ L + P + T +++ + + ++ GL N + G
Sbjct: 147 QDDILYPHLTVRETLVFCSLLRLPKSL--TKQEKILVAESVISELGLTKCENTII---GN 201
Query: 474 NF----SVGQRQLICLARAIVRNNVILVLDEATANVDPKTDL-LIQRTIRKKFADCTVLT 528
+F S G+R+ + +A ++ N +L+LDE T+ +D L+ T+ +
Sbjct: 202 SFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDATAAYRLVL----------TLGS 251
Query: 529 IAHRLHTIMDS------------DKVLVMDSG 548
+A + TI+ S D VLV+ G
Sbjct: 252 LAQKGKTIVTSMHQPSSRVYQMFDSVLVLSEG 283
>gnl|CDD|234274 TIGR03594, GTPase_EngA, ribosome-associated GTPase EngA. EngA
(YfgK, Der) is a ribosome-associated essential GTPase
with a duplication of its GTP-binding domain. It is
broadly to universally distributed among bacteria. It
appears to function in ribosome biogenesis or stability
[Protein synthesis, Other].
Length = 429
Score = 32.0 bits (74), Expect = 0.89
Identities = 10/19 (52%), Positives = 14/19 (73%)
Query: 369 KIGIVGRTGAGKSSLIAAI 387
KI I+GR GKS+L+ A+
Sbjct: 174 KIAIIGRPNVGKSTLVNAL 192
>gnl|CDD|206665 cd01876, YihA_EngB, YihA (EngB) GTPase family. The YihA (EngB)
subfamily of GTPases is typified by the E. coli YihA, an
essential protein involved in cell division control.
YihA and its orthologs are small proteins that typically
contain less than 200 amino acid residues and consists
of the GTPase domain only (some of the eukaryotic
homologs contain an N-terminal extension of about 120
residues that might be involved in organellar
targeting). Homologs of yihA are found in most
Gram-positive and Gram-negative pathogenic bacteria,
with the exception of Mycobacterium tuberculosis. The
broad-spectrum nature of YihA and its essentiality for
cell viability in bacteria make it an attractive
antibacterial target.
Length = 170
Score = 30.9 bits (71), Expect = 0.90
Identities = 9/20 (45%), Positives = 12/20 (60%)
Query: 370 IGIVGRTGAGKSSLIAAIFR 389
+ GR+ GKSSLI A+
Sbjct: 2 VAFAGRSNVGKSSLINALTN 21
>gnl|CDD|237045 PRK12296, obgE, GTPase CgtA; Reviewed.
Length = 500
Score = 32.1 bits (74), Expect = 0.95
Identities = 11/18 (61%), Positives = 15/18 (83%)
Query: 370 IGIVGRTGAGKSSLIAAI 387
+G+VG AGKSSLI+A+
Sbjct: 162 VGLVGFPSAGKSSLISAL 179
>gnl|CDD|213198 cd03231, ABC_CcmA_heme_exporter, Cytochrome c biogenesis
ATP-binding export protein. CcmA, the ATP-binding
component of the bacterial CcmAB transporter. The CCM
family is involved in bacterial cytochrome c biogenesis.
Cytochrome c maturation in E. coli requires the ccm
operon, which encodes eight membrane proteins
(CcmABCDEFGH). CcmE is a periplasmic heme chaperon that
binds heme covalently and transfers it onto
apocytochrome c in the presence of CcmF, CcmG, and CcmH.
The CcmAB proteins represent an ABC transporter and the
CcmCD proteins participate in heme transfer to CcmE.
Length = 201
Score = 31.3 bits (71), Expect = 1.0
Identities = 32/153 (20%), Positives = 65/153 (42%), Gaps = 12/153 (7%)
Query: 356 VIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAE-VEGVIKIDDIDTEDVPLSKLRS 414
+ L+ T+ E + + G G+GK++L+ + L+ + G + ++ + S R
Sbjct: 15 LFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGPLDFQRDSIARG 74
Query: 415 NISIIPQDPVLFSGTLRKNLDPFEKY-PDYVLWTALQEVELKDMIMEGAGLNMTVYEGGT 473
+ + + + ++ +NL + D + AL V GLN
Sbjct: 75 LLYLGHAPGIKTTLSVLENLRFWHADHSDEQVEEALARV----------GLNGFEDRPVA 124
Query: 474 NFSVGQRQLICLARAIVRNNVILVLDEATANVD 506
S GQ++ + LAR ++ + +LDE T +D
Sbjct: 125 QLSAGQQRRVALARLLLSGRPLWILDEPTTALD 157
>gnl|CDD|185052 PRK15097, PRK15097, cytochrome d terminal oxidase subunit 1;
Provisional.
Length = 522
Score = 31.7 bits (72), Expect = 1.1
Identities = 33/125 (26%), Positives = 57/125 (45%), Gaps = 16/125 (12%)
Query: 67 GIYFSLIVGLFVAGISRSTAFYSACMRCSKGIHKKMFEAVVYS-PLAFFSTNPSGRILNR 125
G I+ L +F+S +R G K + A +Y PL + + +G +
Sbjct: 397 GFLMLAIIAL---------SFWSV-IRNRIGEKKWLLRAALYGIPLPWIAVE-AGWFVAE 445
Query: 126 FSKDMGAVDEVLPKAMLDAA--QGVMQVSGALIVSLSVNPLFSIPVLILLYLFWRLSKAY 183
+ + A+ EVLP A+ +++ G + S LI L LF + L L++ F RL +
Sbjct: 446 YGRQPWAIGEVLPTAVANSSLTAGDLLFSMVLICGLYT--LFLVAELFLMFKFARLGPSS 503
Query: 184 LRTSK 188
L+T +
Sbjct: 504 LKTGR 508
>gnl|CDD|213189 cd03222, ABC_RNaseL_inhibitor, ATP-binding cassette domain of RNase
L inhibitor. The ABC ATPase RNase L inhibitor (RLI) is
a key enzyme in ribosomal biogenesis, formation of
translation preinitiation complexes, and assembly of HIV
capsids. RLI's are not transport proteins, and thus
cluster with a group of soluble proteins that lack the
transmembrane components commonly found in other members
of the family. Structurally, RLI's have an N-terminal
Fe-S domain and two nucleotide-binding domains, which
are arranged to form two composite active sites in their
interface cleft. RLI is one of the most conserved
enzymes between archaea and eukaryotes with a sequence
identity more than 48%. The high degree of evolutionary
conservation suggests that RLI performs a central role
in archaeal and eukaryotic physiology.
Length = 177
Score = 31.0 bits (70), Expect = 1.1
Identities = 22/74 (29%), Positives = 38/74 (51%), Gaps = 3/74 (4%)
Query: 474 NFSVGQRQLICLARAIVRNNVILVLDEATANVDPKTDLLIQRTIRK--KFADCTVLTIAH 531
+ S G+ Q + +A A++RN + DE +A +D + L R IR+ + T L + H
Sbjct: 71 DLSGGELQRVAIAAALLRNATFYLFDEPSAYLDIEQRLNAARAIRRLSEEGKKTALVVEH 130
Query: 532 RLHTI-MDSDKVLV 544
L + SD++ V
Sbjct: 131 DLAVLDYLSDRIHV 144
>gnl|CDD|233695 TIGR02037, degP_htrA_DO, periplasmic serine protease, Do/DeqQ
family. This family consists of a set proteins various
designated DegP, heat shock protein HtrA, and protease
DO. The ortholog in Pseudomonas aeruginosa is designated
MucD and is found in an operon that controls mucoid
phenotype. This family also includes the DegQ (HhoA)
paralog in E. coli which can rescue a DegP mutant, but
not the smaller DegS paralog, which cannot. Members of
this family are located in the periplasm and have
separable functions as both protease and chaperone.
Members have a trypsin domain and two copies of a PDZ
domain. This protein protects bacteria from thermal and
other stresses and may be important for the survival of
bacterial pathogens.// The chaperone function is
dominant at low temperatures, whereas the proteolytic
activity is turned on at elevated temperatures [Protein
fate, Protein folding and stabilization, Protein fate,
Degradation of proteins, peptides, and glycopeptides].
Length = 428
Score = 31.8 bits (73), Expect = 1.1
Identities = 19/74 (25%), Positives = 36/74 (48%), Gaps = 18/74 (24%)
Query: 506 DPKTDL-LIQRTIRKKFADCTVLTIAHRLHTIMDSDKVLVMDSGVAVVSSFGFFFSKDLI 564
DP+TD+ +++ +K V+ + DSDK+ V D +A+ + FG
Sbjct: 102 DPRTDIAVLKIDAKKNL---PVIKLG-------DSDKLRVGDWVLAIGNPFGL------- 144
Query: 565 EGTVSAKVLSSRKR 578
TV++ ++S+ R
Sbjct: 145 GQTVTSGIVSALGR 158
>gnl|CDD|206648 cd00882, Ras_like_GTPase, Rat sarcoma (Ras)-like superfamily of
small guanosine triphosphatases (GTPases). Ras-like
GTPase superfamily. The Ras-like superfamily of small
GTPases consists of several families with an extremely
high degree of structural and functional similarity. The
Ras superfamily is divided into at least four families
in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families.
This superfamily also includes proteins like the GTP
translation factors, Era-like GTPases, and G-alpha chain
of the heterotrimeric G proteins. Members of the Ras
superfamily regulate a wide variety of cellular
functions: the Ras family regulates gene expression, the
Rho family regulates cytoskeletal reorganization and
gene expression, the Rab and Sar1/Arf families regulate
vesicle trafficking, and the Ran family regulates
nucleocytoplasmic transport and microtubule
organization. The GTP translation factor family
regulates initiation, elongation, termination, and
release in translation, and the Era-like GTPase family
regulates cell division, sporulation, and DNA
replication. Members of the Ras superfamily are
identified by the GTP binding site, which is made up of
five characteristic sequence motifs, and the switch I
and switch II regions.
Length = 161
Score = 30.9 bits (70), Expect = 1.1
Identities = 10/18 (55%), Positives = 13/18 (72%)
Query: 371 GIVGRTGAGKSSLIAAIF 388
+VGR G GKSSL+ A+
Sbjct: 1 VVVGRGGVGKSSLLNALL 18
>gnl|CDD|180975 PRK07429, PRK07429, phosphoribulokinase; Provisional.
Length = 327
Score = 31.5 bits (72), Expect = 1.2
Identities = 17/56 (30%), Positives = 27/56 (48%), Gaps = 5/56 (8%)
Query: 370 IGIVGRTGAGKSSLIAAIFRL--AEVEGVIKIDDIDTEDVPLSKLRSNISIIPQDP 423
+G+ G +G GK++ + + L E+ VI DD + D K R + I DP
Sbjct: 11 LGVAGDSGCGKTTFLRGLADLLGEELVTVICTDDYHSYD---RKQRKELGITALDP 63
>gnl|CDD|217465 pfam03266, NTPase_1, NTPase. This domain is found across all
species from bacteria to human, and the function was
determined first in a hyperthermophilic bacterium to be
an NTPase. The structure of one member-sequence
represents a variation of the RecA fold, and implies
that the function might be that of a DNA/RNA modifying
enzyme. The sequence carries both a Walker A and Walker
B motif which together are characteristic of ATPases or
GTPases. The protein exhibits an increased expression
profile in human liver cholangiocarcinoma when compared
to normal tissue.
Length = 168
Score = 30.6 bits (70), Expect = 1.2
Identities = 14/40 (35%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Query: 369 KIGIVGRTGAGKSSLIAAIFRLAEVEGVIKIDDIDTEDVP 408
+I I G G GK++L+ + L + EGV K+ T +V
Sbjct: 1 RIFITGPPGVGKTTLVKKVIELLKSEGV-KVGGFYTPEVR 39
>gnl|CDD|222036 pfam13304, AAA_21, AAA domain.
Length = 256
Score = 31.3 bits (70), Expect = 1.2
Identities = 12/57 (21%), Positives = 21/57 (36%)
Query: 371 GIVGRTGAGKSSLIAAIFRLAEVEGVIKIDDIDTEDVPLSKLRSNISIIPQDPVLFS 427
I+G G+GKS+L+ A+ L + + D + P+ F
Sbjct: 3 VIIGPNGSGKSNLLKALALLLLLLSLGLTLDRGLNVGIKLLPFLLDENEIEIPLEFE 59
Score = 31.3 bits (70), Expect = 1.3
Identities = 29/188 (15%), Positives = 60/188 (31%), Gaps = 12/188 (6%)
Query: 341 IEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAEVEGVIKID 400
EF +RY G + K E++ R G E K +
Sbjct: 61 EEFLIDGIRYRYGFELDKE-----DILEELLYEYRKGEELLFERERSKESFEKSPEKKRE 115
Query: 401 DIDTEDVPLSKLRSNISIIPQDPVLFSGTLRKNLDPFEKYPDYVLWTALQEVELKDMIME 460
+V L S S + + ++ + L+ ++L +
Sbjct: 116 LRGLREVLLLLNLSLSSFLLLASLEILLSILLPFSFILGNLRNLRNIELKLLDLVKRLFL 175
Query: 461 GAGLNMTVYEGGTNFSVGQRQLICLARAIVRN---NVILVLDEATANVDPKTDLLIQRTI 517
+ L + S G ++L+ L A++ +L++DE + PK + R +
Sbjct: 176 ESDLLRLLKLLIKGISDGTKRLLALLLALLSALPKGSLLLIDEPENGLHPK----LLRKL 231
Query: 518 RKKFADCT 525
+ + +
Sbjct: 232 VELLKELS 239
>gnl|CDD|215651 pfam00006, ATP-synt_ab, ATP synthase alpha/beta family,
nucleotide-binding domain. This family includes the ATP
synthase alpha and beta subunits, the ATP synthase
associated with flagella and the termination factor Rho.
Length = 213
Score = 30.9 bits (71), Expect = 1.2
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 369 KIGIVGRTGAGKSSLIAAIFRLAEVEGV 396
+IGI G +G GK+ L+ I R A+ + V
Sbjct: 17 RIGIFGGSGTGKTVLLGMIARNAKADVV 44
>gnl|CDD|206748 cd01855, YqeH, Circularly permuted YqeH GTPase. YqeH is an
essential GTP-binding protein. Depletion of YqeH induces
an excess initiation of DNA replication, suggesting that
it negatively controls initiation of chromosome
replication. The YqeH subfamily is common in eukaryotes
and sporadically present in bacteria with probable
acquisition by plants from chloroplasts. Proteins of the
YqeH family contain all sequence motifs typical of the
vast class of P-loop-containing GTPases, but show a
circular permutation, with a G4-G1-G3 pattern of motifs
as opposed to the regular G1-G3-G4 pattern seen in most
GTPases.
Length = 191
Score = 30.7 bits (70), Expect = 1.3
Identities = 13/59 (22%), Positives = 26/59 (44%), Gaps = 6/59 (10%)
Query: 337 VLGKIEFQNTNVRYLSGPR------VIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFR 389
L + +V +S + +I+ + + + +VG T GKS+LI A+ +
Sbjct: 89 RLKIGGLKIKDVILVSAKKGWGVEELIEEIKKLAKYRGDVYVVGATNVGKSTLINALLK 147
>gnl|CDD|131577 TIGR02525, plasmid_TraJ, plasmid transfer ATPase TraJ. Members of
this protein family are predicted ATPases associated
with plasmid transfer loci in bacteria. This family is
most similar to the DotB ATPase of a type-IV
secretion-like system of obligate intracellular
pathogens Legionella pneumophila and Coxiella burnetii
(TIGR02524) [Mobile and extrachromosomal element
functions, Plasmid functions].
Length = 372
Score = 31.3 bits (71), Expect = 1.4
Identities = 11/25 (44%), Positives = 19/25 (76%), Gaps = 1/25 (4%)
Query: 366 PKEKIGIV-GRTGAGKSSLIAAIFR 389
P +G++ G TG+GKS+L A+I++
Sbjct: 147 PAAGLGLICGETGSGKSTLAASIYQ 171
>gnl|CDD|213203 cd03236, ABC_RNaseL_inhibitor_domain1, The ATP-binding cassette
domain 1 of RNase L inhibitor. The ABC ATPase, RNase L
inhibitor (RLI), is a key enzyme in ribosomal
biogenesis, formation of translation preinitiation
complexes, and assembly of HIV capsids. RLI s are not
transport proteins and thus cluster with a group of
soluble proteins that lack the transmembrane components
commonly found in other members of the family.
Structurally, RLIs have an N-terminal Fe-S domain and
two nucleotide binding domains which are arranged to
form two composite active sites in their interface
cleft. RLI is one of the most conserved enzymes between
archaea and eukaryotes with a sequence identity more
than 48%. The high degree of evolutionary conservation
suggests that RLI performs a central role in archaeal
and eukaryotic physiology.
Length = 255
Score = 31.2 bits (71), Expect = 1.5
Identities = 47/192 (24%), Positives = 76/192 (39%), Gaps = 24/192 (12%)
Query: 370 IGIVGRTGAGKSSLIAAIFRLAEVEGVIKIDDIDTEDVPLSKLRSNISIIPQDPVLFSGT 429
+G+VG G GKS+ + I + K DD D L + R + Q+ F+
Sbjct: 29 LGLVGPNGIGKSTALK-ILAGKLKPNLGKFDDPPDWDEILDEFRGSEL---QN--YFTKL 82
Query: 430 LRKNLDPFEKYPDYV-------------LWTALQEVELKDMIMEGAGLNMTVYEGGTNFS 476
L ++ K P YV L E D +++ L + S
Sbjct: 83 LEGDVKVIVK-PQYVDLIPKAVKGKVGELLKKKDERGKLDELVDQLELRHVLDRNIDQLS 141
Query: 477 VGQRQLICLARAIVRNNVILVLDEATANVDPKTDLLIQRTIRKKFADC-TVLTIAHRLHT 535
G+ Q + +A A+ R+ DE ++ +D K L R IR+ D VL + H L
Sbjct: 142 GGELQRVAIAAALARDADFYFFDEPSSYLDIKQRLNAARLIRELAEDDNYVLVVEHDL-A 200
Query: 536 IMD--SDKVLVM 545
++D SD + +
Sbjct: 201 VLDYLSDYIHCL 212
>gnl|CDD|184125 PRK13538, PRK13538, cytochrome c biogenesis protein CcmA;
Provisional.
Length = 204
Score = 30.5 bits (70), Expect = 1.7
Identities = 11/25 (44%), Positives = 16/25 (64%)
Query: 359 NLNITIHPKEKIGIVGRTGAGKSSL 383
L+ T++ E + I G GAGK+SL
Sbjct: 19 GLSFTLNAGELVQIEGPNGAGKTSL 43
>gnl|CDD|216796 pfam01935, DUF87, Domain of unknown function DUF87. The function
of this prokaryotic domain is unknown. It contains
several conserved aspartates and histidines that could
be metal ligands.
Length = 218
Score = 30.4 bits (69), Expect = 1.9
Identities = 17/60 (28%), Positives = 28/60 (46%), Gaps = 4/60 (6%)
Query: 370 IGIVGRTGAGKSSLIAAIFR--LAEVEGVIKIDDIDTEDVPLSK--LRSNISIIPQDPVL 425
I+G TG+GKS+ +A + L + + I D E L + +++I DP L
Sbjct: 26 FAILGSTGSGKSNTVAVLLEELLEKKGATVLIFDPHGEYGWLLEDLGPGKVNVITPDPEL 85
Score = 28.5 bits (64), Expect = 9.5
Identities = 16/91 (17%), Positives = 34/91 (37%), Gaps = 1/91 (1%)
Query: 271 FADIGGKVGLAVTQTMTLMGVVQWAMRQAAEVENHMISVKRLVEYTKLEPEGNLSPNYED 330
D+ + + +++ A+ Q + E +S+ L+E E + S N
Sbjct: 94 PEDLADLLPILEPNAEVQRSILEEALDQLKKEEIGKLSIDELIEKLLEELLEDASLNKLS 153
Query: 331 ENEIWPVLGKIE-FQNTNVRYLSGPRVIKNL 360
+ I VL K+E + + +I +
Sbjct: 154 NDAIRRVLDKLERLLFSGGLIDTSTDIIDLI 184
>gnl|CDD|224617 COG1703, ArgK, Putative periplasmic protein kinase ArgK and related
GTPases of G3E family [Amino acid transport and
metabolism].
Length = 323
Score = 30.8 bits (70), Expect = 2.0
Identities = 16/35 (45%), Positives = 20/35 (57%), Gaps = 4/35 (11%)
Query: 370 IGIVGRTGAGKSSLIAAIFRLAEVEG----VIKID 400
IGI G GAGKS+LI A+ R G V+ +D
Sbjct: 54 IGITGVPGAGKSTLIEALGRELRERGHRVAVLAVD 88
>gnl|CDD|237731 PRK14494, PRK14494, putative molybdopterin-guanine dinucleotide
biosynthesis protein MobB/FeS domain-containing protein
protein; Provisional.
Length = 229
Score = 30.3 bits (69), Expect = 2.0
Identities = 14/59 (23%), Positives = 26/59 (44%), Gaps = 9/59 (15%)
Query: 370 IGIVGRTGAGKSSLIAAIFRLAEVEG----VIK-----IDDIDTEDVPLSKLRSNISII 419
IG++G +GK++LI I + + G K D DT+ K + + ++
Sbjct: 4 IGVIGFKDSGKTTLIEKILKNLKERGYRVATAKHTHHEFDKPDTDTYRFKKAGAEVVVV 62
>gnl|CDD|206690 cd04104, p47_IIGP_like, p47 GTPase family includes IGTP, TGTP/Mg21,
IRG-47, GTPI, LRG-47, and IIGP1. The p47 GTPase family
consists of several highly homologous proteins,
including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and
IIGP1. They are found in higher eukaryotes where they
play a role in immune resistance against intracellular
pathogens. p47 proteins exist at low resting levels in
mouse cells, but are strongly induced by Type II
interferon (IFN-gamma). ITGP is critical for resistance
to Toxoplasma gondii infection and in involved in
inhibition of Coxsackievirus-B3-induced apoptosis. TGTP
was shown to limit vesicular stomatitis virus (VSV)
infection of fibroblasts in vitro. IRG-47 is involved in
resistance to T. gondii infection. LRG-47 has been
implicated in resistance to T. gondii, Listeria
monocytogenes, Leishmania, and mycobacterial infections.
IIGP1 has been shown to localize to the ER and to the
Golgi membranes in IFN-induced cells and inflamed
tissues. In macrophages, IIGP1 interacts with hook3, a
microtubule binding protein that participates in the
organization of the cis-Golgi compartment.
Length = 197
Score = 30.4 bits (69), Expect = 2.0
Identities = 10/19 (52%), Positives = 13/19 (68%)
Query: 369 KIGIVGRTGAGKSSLIAAI 387
I + G +GAGKSS I A+
Sbjct: 3 NIAVTGESGAGKSSFINAL 21
>gnl|CDD|238978 cd02020, CMPK, Cytidine monophosphate kinase (CMPK) catalyzes the
reversible phosphorylation of cytidine monophosphate
(CMP) to produce cytidine diphosphate (CDP), using ATP
as the preferred phosphoryl donor.
Length = 147
Score = 29.8 bits (68), Expect = 2.0
Identities = 29/83 (34%), Positives = 41/83 (49%), Gaps = 19/83 (22%)
Query: 369 KIGIVGRTGAGKSSLIAAIFRLAEVEGVIKID--DIDTEDVPLSKLRSNISIIPQDPVLF 426
I I G G+GKS+ +A + LA+ G+ +D I TE+V KL S ++ IP+
Sbjct: 1 IIAIDGPAGSGKST-VAKL--LAKKLGLPYLDTGGIRTEEV--GKLASEVAAIPE----- 50
Query: 427 SGTLRKNLDP----FEKYPDYVL 445
+RK LD K P VL
Sbjct: 51 ---VRKALDERQRELAKKPGIVL 70
>gnl|CDD|206733 cd04170, EF-G_bact, Elongation factor G (EF-G) family.
Translocation is mediated by EF-G (also called
translocase). The structure of EF-G closely resembles
that of the complex between EF-Tu and tRNA. This is an
example of molecular mimicry; a protein domain evolved
so that it mimics the shape of a tRNA molecule. EF-G in
the GTP form binds to the ribosome, primarily through
the interaction of its EF-Tu-like domain with the 50S
subunit. The binding of EF-G to the ribosome in this
manner stimulates the GTPase activity of EF-G. On GTP
hydrolysis, EF-G undergoes a conformational change that
forces its arm deeper into the A site on the 30S
subunit. To accommodate this domain, the peptidyl-tRNA
in the A site moves to the P site, carrying the mRNA and
the deacylated tRNA with it. The ribosome may be
prepared for these rearrangements by the initial binding
of EF-G as well. The dissociation of EF-G leaves the
ribosome ready to accept the next aminoacyl-tRNA into
the A site. This group contains only bacterial members.
Length = 268
Score = 30.6 bits (70), Expect = 2.1
Identities = 12/39 (30%), Positives = 21/39 (53%), Gaps = 7/39 (17%)
Query: 370 IGIVGRTGAGKSSLIAAIFRLAEVEGVIK----IDDIDT 404
I +VG +G+GK++L A+ G I ++D +T
Sbjct: 2 IALVGHSGSGKTTLAEALLYAT---GAIDRLGRVEDGNT 37
>gnl|CDD|213246 cd03279, ABC_sbcCD, ATP-binding cassette domain of sbcCD. SbcCD
and other Mre11/Rad50 (MR) complexes are implicated in
the metabolism of DNA ends. They cleave ends sealed by
hairpin structures and are thought to play a role in
removing protein bound to DNA termini.
Length = 213
Score = 30.3 bits (69), Expect = 2.1
Identities = 10/17 (58%), Positives = 13/17 (76%)
Query: 371 GIVGRTGAGKSSLIAAI 387
I G TGAGKS+++ AI
Sbjct: 32 LICGPTGAGKSTILDAI 48
>gnl|CDD|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional.
Length = 880
Score = 31.2 bits (71), Expect = 2.2
Identities = 9/17 (52%), Positives = 14/17 (82%)
Query: 372 IVGRTGAGKSSLIAAIF 388
I+G+ G+GKSS++ AI
Sbjct: 28 IIGQNGSGKSSILEAIL 44
>gnl|CDD|236584 PRK09602, PRK09602, translation-associated GTPase; Reviewed.
Length = 396
Score = 30.9 bits (71), Expect = 2.2
Identities = 12/26 (46%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
Query: 369 KIGIVGRTGAGKSSLIAAIFRLAEVE 394
IG+VG+ GKS+ A LA+VE
Sbjct: 3 TIGLVGKPNVGKSTFFNAA-TLADVE 27
>gnl|CDD|239390 cd03116, MobB, Molybdenum is an essential trace element in the form
of molybdenum cofactor (Moco) which is associated with
the metabolism of nitrogen, carbon and sulfur by redox
active enzymes. In E. coli, the synthesis of Moco
involves genes from several loci: moa, mob, mod, moe and
mog. The mob locus contains mobA and mobB genes. MobB
catalyzes the attachment of the guanine dinucleotide to
molybdopterin.
Length = 159
Score = 29.9 bits (68), Expect = 2.3
Identities = 17/44 (38%), Positives = 23/44 (52%), Gaps = 8/44 (18%)
Query: 370 IGIVGRTGAGKSSLIAAIFRLAEVEG----VIKID----DIDTE 405
IG VG +G+GK++L+ + G VIK D DIDT
Sbjct: 4 IGFVGYSGSGKTTLLEKLIPALSARGLRVAVIKHDHHDFDIDTP 47
>gnl|CDD|131576 TIGR02524, dot_icm_DotB, Dot/Icm secretion system ATPase DotB.
Members of this protein family are the DotB component of
Dot/Icm secretion systems, as found in obligate
intracellular pathogens Legionella pneumophila and
Coxiella burnetii. While this system resembles type IV
secretion systems and has been called a form of type IV,
the liturature now seems to favor calling this the
Dot/Icm system. This family is most closely related to
TraJ proteins of plasmid transfer, rather than to
proteins of other type IV secretion systems.
Length = 358
Score = 30.7 bits (69), Expect = 2.5
Identities = 19/31 (61%), Positives = 23/31 (74%), Gaps = 2/31 (6%)
Query: 364 IHPKEKI-GIVGRTGAGKSSLIAAIFR-LAE 392
I P+E I I G TG+GKS+L+AAI R LAE
Sbjct: 130 IAPQEGIVFITGATGSGKSTLLAAIIRELAE 160
>gnl|CDD|233207 TIGR00955, 3a01204, The Eye Pigment Precursor Transporter (EPP)
Family protein. [Transport and binding proteins,
Other].
Length = 617
Score = 30.8 bits (70), Expect = 2.6
Identities = 42/167 (25%), Positives = 83/167 (49%), Gaps = 22/167 (13%)
Query: 355 RVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAI-FRLA---EVEGVIKIDDIDTEDVPLS 410
++KN++ P E + ++G +GAGK++L+ A+ FR + G + ++ +
Sbjct: 39 HLLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNG---MPIDAK 95
Query: 411 KLRSNISIIPQDPVLFSGTL--RKNLDPFE---KYPDYVLWTALQEVELKDMIMEGAGL- 464
++R+ + + QD LF TL R++L F+ + P V T ++ E D +++ GL
Sbjct: 96 EMRAISAYVQQDD-LFIPTLTVREHLM-FQAHLRMPRRV--TKKEKRERVDEVLQALGLR 151
Query: 465 ---NMTVYEGGT--NFSVGQRQLICLARAIVRNNVILVLDEATANVD 506
N + G S G+R+ + A ++ + +L DE T+ +D
Sbjct: 152 KCANTRIGVPGRVKGLSGGERKRLAFASELLTDPPLLFCDEPTSGLD 198
>gnl|CDD|203423 pfam06305, DUF1049, Protein of unknown function (DUF1049). This
family consists of several hypothetical bacterial
proteins of unknown function.
Length = 68
Score = 27.9 bits (63), Expect = 2.6
Identities = 16/50 (32%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
Query: 145 AQGVMQVSGALIVSLSVNPLFSIPVLILLYLFWRLSKAYLRTSKSLKYLE 194
AQG +S L+++ ++ F + L+ L + RL + R K LK LE
Sbjct: 14 AQGEFPLSLLLLIAFALG--FLLGWLLSLPFYLRLRRRLRRLKKQLKKLE 61
>gnl|CDD|237475 PRK13695, PRK13695, putative NTPase; Provisional.
Length = 174
Score = 29.9 bits (68), Expect = 2.7
Identities = 13/29 (44%), Positives = 17/29 (58%)
Query: 369 KIGIVGRTGAGKSSLIAAIFRLAEVEGVI 397
KIGI G G GK++L+ I L + EG
Sbjct: 2 KIGITGPPGVGKTTLVLKIAELLKEEGYK 30
>gnl|CDD|224116 COG1195, RecF, Recombinational DNA repair ATPase (RecF pathway)
[DNA replication, recombination, and repair].
Length = 363
Score = 30.3 bits (69), Expect = 2.8
Identities = 13/37 (35%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Query: 355 RVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA 391
R L++ + P + +VG G GK++L+ AI+ LA
Sbjct: 12 RNYAELDLDLSPGVNV-LVGENGQGKTNLLEAIYLLA 47
>gnl|CDD|213200 cd03233, ABCG_PDR_domain1, First domain of the pleiotropic drug
resistance-like subfamily G of ATP-binding cassette
transporters. The pleiotropic drug resistance (PDR) is
a well-described phenomenon occurring in fungi and
shares several similarities with processes in bacteria
and higher eukaryotes. This PDR subfamily represents
domain I of its (ABC-IM)2 organization. ABC transporters
are a large family of proteins involved in the transport
of a wide variety of different compounds including
sugars, ions, peptides, and more complex organic
molecules. The nucleotide-binding domain shows the
highest similarity between all members of the family.
ABC transporters are a subset of nucleotide hydrolases
that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing proteins.
Length = 202
Score = 29.9 bits (68), Expect = 2.9
Identities = 54/214 (25%), Positives = 87/214 (40%), Gaps = 62/214 (28%)
Query: 357 IKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAE----VEGVIKIDDIDTEDVPLSKL 412
+K+ + + P E + ++GR G+G S+L+ A+ E VEG I + I ++ K
Sbjct: 23 LKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIPYKEFA-EKY 81
Query: 413 RSNISIIPQD----PVLFSGTLRKNLDPFEKYPDYVLWTALQEVELK-DMIMEGAGLNMT 467
I + ++ P L T+R+ LD AL+ K + + G
Sbjct: 82 PGEIIYVSEEDVHFPTL---TVRETLD-----------FALR---CKGNEFVRG------ 118
Query: 468 VYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATANVDPKTDLLIQRTIRKKFADCTVL 527
S G+R+ + +A A+V +L D +T +D T L I + IR
Sbjct: 119 -------ISGGERKRVSIAEALVSRASVLCWDNSTRGLDSSTALEILKCIR--------- 162
Query: 528 TIAHRLH-TIMDS------------DKVLVMDSG 548
T+A L T S DKVLV+ G
Sbjct: 163 TMADVLKTTTFVSLYQASDEIYDLFDKVLVLYEG 196
>gnl|CDD|180762 PRK06936, PRK06936, type III secretion system ATPase; Provisional.
Length = 439
Score = 30.1 bits (68), Expect = 3.4
Identities = 18/42 (42%), Positives = 27/42 (64%), Gaps = 1/42 (2%)
Query: 353 GPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAEVE 394
G RVI L +T +++GI G GKS+L+A++ R AEV+
Sbjct: 149 GVRVIDGL-LTCGEGQRMGIFAAAGGGKSTLLASLIRSAEVD 189
>gnl|CDD|234806 PRK00635, PRK00635, excinuclease ABC subunit A; Provisional.
Length = 1809
Score = 30.6 bits (69), Expect = 3.4
Identities = 18/37 (48%), Positives = 25/37 (67%), Gaps = 4/37 (10%)
Query: 350 YLSGPRVIKNL-NITIH--PKEKIGIVGRTGAGKSSL 383
LSG V +NL NI+I P+E + + G +G+GKSSL
Sbjct: 7 RLSGITV-RNLKNISIEFCPREIVLLTGVSGSGKSSL 42
>gnl|CDD|213209 cd03242, ABC_RecF, ATP-binding cassette domain of RecF. RecF is a
recombinational DNA repair ATPase that maintains
replication in the presence of DNA damage. When
replication is prematurely disrupted by DNA damage,
several recF pathway gene products play critical roles
processing the arrested replication fork, allowing it to
resume and complete its task. This CD represents the
nucleotide binding domain of RecF. RecF belongs to a
large superfamily of ABC transporters involved in the
transport of a wide variety of different compounds
including sugars, ions, peptides, and more complex
organic molecules. The nucleotide binding domain shows
the highest similarity between all members of the
family. ABC transporters are a subset of nucleotide
hydrolases with a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing proteins.
Length = 270
Score = 30.0 bits (68), Expect = 3.5
Identities = 11/33 (33%), Positives = 16/33 (48%), Gaps = 1/33 (3%)
Query: 359 NLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA 391
L + P +VG GK++L+ AI LA
Sbjct: 14 ELELEFEPG-VTVLVGENAQGKTNLLEAISLLA 45
>gnl|CDD|184491 PRK14079, recF, recombination protein F; Provisional.
Length = 349
Score = 30.1 bits (68), Expect = 3.5
Identities = 12/47 (25%), Positives = 21/47 (44%), Gaps = 9/47 (19%)
Query: 343 FQNTNVRYLSGPRVIKNLNITIHPKEKI-GIVGRTGAGKSSLIAAIF 388
+ N R L+ P + + +VG AGK++L+ AI+
Sbjct: 6 LRQLNYRNLAPPTL--------AFPPGVTAVVGENAAGKTNLLEAIY 44
>gnl|CDD|180526 PRK06315, PRK06315, type III secretion system ATPase; Provisional.
Length = 442
Score = 30.3 bits (68), Expect = 3.7
Identities = 21/72 (29%), Positives = 33/72 (45%), Gaps = 5/72 (6%)
Query: 329 EDENEIWPVL----GKIEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLI 384
E+ +E +P+ + +G R I + +T+ ++IGI G GKSSL+
Sbjct: 123 ENVDETYPIFRAPPDPLHRAKLRTILSTGVRCIDGM-LTVARGQRIGIFAGAGVGKSSLL 181
Query: 385 AAIFRLAEVEGV 396
I R AE V
Sbjct: 182 GMIARNAEEADV 193
>gnl|CDD|206727 cd04164, trmE, trmE is a tRNA modification GTPase. TrmE (MnmE,
ThdF, MSS1) is a 3-domain protein found in bacteria and
eukaryotes. It controls modification of the uridine at
the wobble position (U34) of tRNAs that read codons
ending with A or G in the mixed codon family boxes. TrmE
contains a GTPase domain that forms a canonical Ras-like
fold. It functions a molecular switch GTPase, and
apparently uses a conformational change associated with
GTP hydrolysis to promote the tRNA modification
reaction, in which the conserved cysteine in the
C-terminal domain is thought to function as a catalytic
residue. In bacteria that are able to survive in
extremely low pH conditions, TrmE regulates
glutamate-dependent acid resistance.
Length = 159
Score = 29.0 bits (66), Expect = 3.8
Identities = 9/21 (42%), Positives = 13/21 (61%)
Query: 369 KIGIVGRTGAGKSSLIAAIFR 389
K+ I G+ GKSSL+ A+
Sbjct: 5 KVVIAGKPNVGKSSLLNALAG 25
>gnl|CDD|213194 cd03227, ABC_Class2, ATP-binding cassette domain of non-transporter
proteins. ABC-type Class 2 contains systems involved in
cellular processes other than transport. These families
are characterized by the fact that the ABC subunit is
made up of duplicated, fused ABC modules (ABC2). No
known transmembrane proteins or domains are associated
with these proteins.
Length = 162
Score = 29.3 bits (66), Expect = 3.9
Identities = 10/34 (29%), Positives = 16/34 (47%)
Query: 354 PRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAI 387
P ++T I G G+GKS+++ AI
Sbjct: 8 PSYFVPNDVTFGEGSLTIITGPNGSGKSTILDAI 41
>gnl|CDD|206685 cd01898, Obg, Obg GTPase. The Obg nucleotide binding protein
subfamily has been implicated in stress response,
chromosome partitioning, replication initiation,
mycelium development, and sporulation. Obg proteins are
among a large group of GTP binding proteins conserved
from bacteria to humans. The E. coli homolog, ObgE is
believed to function in ribosomal biogenesis. Members of
the subfamily contain two equally and highly conserved
domains, a C-terminal GTP binding domain and an
N-terminal glycine-rich domain.
Length = 170
Score = 28.9 bits (66), Expect = 4.3
Identities = 10/18 (55%), Positives = 15/18 (83%)
Query: 370 IGIVGRTGAGKSSLIAAI 387
+G+VG AGKS+L++AI
Sbjct: 3 VGLVGLPNAGKSTLLSAI 20
>gnl|CDD|227341 COG5008, PilU, Tfp pilus assembly protein, ATPase PilU [Cell
motility and secretion / Intracellular trafficking and
secretion].
Length = 375
Score = 29.7 bits (67), Expect = 4.4
Identities = 19/51 (37%), Positives = 30/51 (58%), Gaps = 2/51 (3%)
Query: 337 VLGKIEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAI 387
VL +IE + L P V+K+L + + + IVG TG+GKS+ +AA+
Sbjct: 99 VLRRIETKIPTFEELKLPEVLKDLALA--KRGLVIIVGATGSGKSTTMAAM 147
>gnl|CDD|233986 TIGR02729, Obg_CgtA, Obg family GTPase CgtA. This model describes
a univeral, mostly one-gene-per-genome GTP-binding
protein that associates with ribosomal subunits and
appears to play a role in ribosomal RNA maturation. This
GTPase, related to the nucleolar protein Obg, is
designated CgtA in bacteria. Mutations in this gene are
pleiotropic, but it appears that effects on cellular
functions such as chromosome partition may be secondary
to the effect on ribosome structure. Recent work done in
Vibrio cholerae shows an essential role in the stringent
response, in which RelA-dependent ability to synthesize
the alarmone ppGpp is required for deletion of this
GTPase to be lethal [Protein synthesis, Other].
Length = 329
Score = 29.7 bits (68), Expect = 4.6
Identities = 10/18 (55%), Positives = 15/18 (83%)
Query: 370 IGIVGRTGAGKSSLIAAI 387
+G+VG AGKS+LI+A+
Sbjct: 160 VGLVGLPNAGKSTLISAV 177
>gnl|CDD|223256 COG0178, UvrA, Excinuclease ATPase subunit [DNA replication,
recombination, and repair].
Length = 935
Score = 29.9 bits (68), Expect = 4.9
Identities = 14/37 (37%), Positives = 25/37 (67%), Gaps = 4/37 (10%)
Query: 350 YLSGPRV--IKNLNITIHPKEKIGIV-GRTGAGKSSL 383
+ G R +KN+++ I P+ K+ ++ G +G+GKSSL
Sbjct: 7 RIRGAREHNLKNIDLEI-PRNKLVVITGLSGSGKSSL 42
Score = 29.5 bits (67), Expect = 6.2
Identities = 11/29 (37%), Positives = 19/29 (65%), Gaps = 2/29 (6%)
Query: 357 IKNLNITIHPKEK-IGIVGRTGAGKSSLI 384
+KN+++ I P + G +G+GKS+LI
Sbjct: 617 LKNIDVEI-PLGVFTCVTGVSGSGKSTLI 644
>gnl|CDD|237048 PRK12299, obgE, GTPase CgtA; Reviewed.
Length = 335
Score = 29.7 bits (68), Expect = 5.2
Identities = 10/18 (55%), Positives = 15/18 (83%)
Query: 370 IGIVGRTGAGKSSLIAAI 387
+G+VG AGKS+LI+A+
Sbjct: 161 VGLVGLPNAGKSTLISAV 178
>gnl|CDD|233918 TIGR02546, III_secr_ATP, type III secretion apparatus
H+-transporting two-sector ATPase. [Protein fate,
Protein and peptide secretion and trafficking, Cellular
processes, Pathogenesis].
Length = 422
Score = 29.6 bits (67), Expect = 5.3
Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Query: 353 GPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAE 392
G R I L +T ++IGI G GKS+L+ I R A
Sbjct: 132 GVRAIDGL-LTCGEGQRIGIFAGAGVGKSTLLGMIARGAS 170
>gnl|CDD|102061 PRK05922, PRK05922, type III secretion system ATPase; Validated.
Length = 434
Score = 29.5 bits (66), Expect = 5.4
Identities = 12/36 (33%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Query: 352 SGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAI 387
+G + I +T+ ++IG+ G+GKSSL++ I
Sbjct: 143 TGIKAIDAF-LTLGKGQRIGVFSEPGSGKSSLLSTI 177
>gnl|CDD|234734 PRK00349, uvrA, excinuclease ABC subunit A; Reviewed.
Length = 943
Score = 29.7 bits (68), Expect = 5.5
Identities = 12/27 (44%), Positives = 20/27 (74%), Gaps = 2/27 (7%)
Query: 358 KNLNITIHPKEK-IGIVGRTGAGKSSL 383
KN+++ I P++K + G +G+GKSSL
Sbjct: 17 KNIDLDI-PRDKLVVFTGLSGSGKSSL 42
>gnl|CDD|224677 COG1763, MobB, Molybdopterin-guanine dinucleotide biosynthesis
protein [Coenzyme metabolism].
Length = 161
Score = 28.8 bits (65), Expect = 5.5
Identities = 22/93 (23%), Positives = 38/93 (40%), Gaps = 17/93 (18%)
Query: 370 IGIVGRTGAGKSSLIAAIFRLAEVEG----VIKID----DIDTEDV---PLSKLRSNISI 418
+GIVG +GK++LI + R + G +K D+D K ++ +
Sbjct: 5 LGIVGYKNSGKTTLIEKLVRKLKARGYRVATVKHAHHDFDLDKPGKDTYRHRKAGADQVV 64
Query: 419 IPQDP--VLFSGTLRKNLDP-FEKYP---DYVL 445
+ D L + T ++LD + D VL
Sbjct: 65 VASDHRTALMTRTPDRDLDAVLSRLDPLLDLVL 97
>gnl|CDD|222000 pfam13238, AAA_18, AAA domain.
Length = 128
Score = 28.2 bits (63), Expect = 5.6
Identities = 12/37 (32%), Positives = 16/37 (43%), Gaps = 3/37 (8%)
Query: 370 IGIVGRTGAGKSSLIAAIFRLAEVEGVIKIDDIDTED 406
I I G G+GK++L LAE G + D
Sbjct: 1 ILITGTPGSGKTTL---AKELAERLGDVLRDLAKENG 34
>gnl|CDD|213238 cd03271, ABC_UvrA_II, ATP-binding cassette domain II of the
excision repair protein UvrA. Nucleotide excision
repair in eubacteria is a process that repairs DNA
damage by the removal of a 12-13-mer oligonucleotide
containing the lesion. Recognition and cleavage of the
damaged DNA is a multistep ATP-dependent reaction that
requires the UvrA, UvrB, and UvrC proteins. Both UvrA
and UvrB are ATPases, with UvrA having two ATP binding
sites, which have the characteristic signature of the
family of ABC proteins and UvrB having one ATP binding
site that is structurally related to that of helicases.
Length = 261
Score = 29.1 bits (66), Expect = 5.9
Identities = 14/36 (38%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
Query: 351 LSGPRV--IKNLNITIHPKEKIGIVGRTGAGKSSLI 384
L G R +KN+++ I + G +G+GKSSLI
Sbjct: 3 LKGARENNLKNIDVDIPLGVLTCVTGVSGSGKSSLI 38
>gnl|CDD|238984 cd02026, PRK, Phosphoribulokinase (PRK) is an enzyme involved in
the Benson-Calvin cycle in chloroplasts or
photosynthetic prokaryotes. This enzyme catalyzes the
phosphorylation of D-ribulose 5-phosphate to form
D-ribulose 1, 5-biphosphate, using ATP and NADPH
produced by the primary reactions of photosynthesis.
Length = 273
Score = 29.2 bits (66), Expect = 6.5
Identities = 18/56 (32%), Positives = 28/56 (50%), Gaps = 5/56 (8%)
Query: 370 IGIVGRTGAGKSSLIAAIFRL--AEVEGVIKIDDIDTEDVPLSKLRSNISIIPQDP 423
IG+ G +G GKS+ + + L +++ VI +DD + D K R I DP
Sbjct: 2 IGVAGDSGCGKSTFLRRLTSLFGSDLVTVICLDDYHSLD---RKGRKETGITALDP 54
>gnl|CDD|221754 pfam12754, Blt1, Cell-cycle control medial ring component. During
size-dependent cell cycle transitions controlled by the
ubiquitous cyclin-dependent kinase Cdk1, Blt1 has been
shown to co-localise with Cdr2 in the medial interphase
nodes, as well as with Mid1 which was previously shown
to localise to similar interphase structures. Physical
interactions between Blt1-Mid1, Blt1-Cdr2 and Cdr2-Mid1
were detected, indicating that medial cortical nodes are
formed by the ordered, Cdr2-dependent assembly of
multiple interacting proteins during interphase.
Q5KIH8.1/10-346; Q5KIH8.1/10-90;.
Length = 192
Score = 28.5 bits (64), Expect = 6.5
Identities = 19/72 (26%), Positives = 31/72 (43%), Gaps = 8/72 (11%)
Query: 394 EGVIKIDDIDTEDVPLSKLRSNISIIPQDPVLFSGTLRKNLDPFEKYPDYVLWTALQEVE 453
+ V +E VPL K++ + + PV TL + L + L + +EVE
Sbjct: 98 QRVHDAQAAQSERVPLDKIKI---LYKKKPVD-GKTLAEVL----AEDESGLLSGGKEVE 149
Query: 454 LKDMIMEGAGLN 465
MI+ GA +
Sbjct: 150 FGVMILGGAAVT 161
>gnl|CDD|214414 MTH00063, ND5, NADH dehydrogenase subunit 5; Provisional.
Length = 522
Score = 29.5 bits (67), Expect = 6.8
Identities = 18/50 (36%), Positives = 26/50 (52%), Gaps = 10/50 (20%)
Query: 235 HSST------WHLFVYTN-MGFAYLIDFLCLLYLSTILIS---FFFFADI 274
HSST W + Y +GF++L F +L L TI I+ FF+D+
Sbjct: 195 HSSTLVAAGVWFVMRYDYLLGFSWLSIFFSVLLLLTIFITGVSSLFFSDL 244
>gnl|CDD|223091 COG0012, COG0012, Predicted GTPase, probable translation factor
[Translation, ribosomal structure and biogenesis].
Length = 372
Score = 29.1 bits (66), Expect = 6.9
Identities = 11/19 (57%), Positives = 13/19 (68%)
Query: 369 KIGIVGRTGAGKSSLIAAI 387
KIGIVG GKS+L A+
Sbjct: 4 KIGIVGLPNVGKSTLFNAL 22
>gnl|CDD|239950 cd04513, Glycosylasparaginase, Glycosylasparaginase catalyzes the
hydrolysis of the glycosylamide bond of
asparagine-linked glycoproteins. This enzyme is an
amidase located inside lysosomes. Mutation of this gene
in humans causes a genetic disorder known as
aspartylglycosaminuria (AGU). The glycosylasparaginase
precursor undergoes autoproteolysis through an N-O or
N-S acyl rearrangement of the peptide bond, which leads
to the cleavage of a peptide bond between an Asp and a
Thr. This proteolysis step generates an exposed
N-terminal catalytic threonine and activates the enzyme.
Length = 263
Score = 28.7 bits (65), Expect = 7.1
Identities = 25/101 (24%), Positives = 42/101 (41%), Gaps = 29/101 (28%)
Query: 435 DPFEK------YPDYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQ----RQLIC 484
DP +K PD EV L IM+G + G +V + I
Sbjct: 39 DPCDKSVGYGGSPD-----ENGEVTLDAAIMDGNTM-----RVG---AVAALRGIKNAIS 85
Query: 485 LARAIV--RNNVILVLDEAT----ANVDPKTDLLIQRTIRK 519
+ARA++ + +LV + AT + P+ +LL +R+ +
Sbjct: 86 VARAVMEHTKHTLLVGEGATRFAVSMGFPEENLLTERSRKA 126
>gnl|CDD|216202 pfam00931, NB-ARC, NB-ARC domain.
Length = 285
Score = 28.8 bits (65), Expect = 7.1
Identities = 11/26 (42%), Positives = 15/26 (57%)
Query: 370 IGIVGRTGAGKSSLIAAIFRLAEVEG 395
+GIVG G GK++L I+ V G
Sbjct: 22 VGIVGMGGVGKTTLAKQIYNDDSVGG 47
>gnl|CDD|237536 PRK13873, PRK13873, conjugal transfer ATPase TrbE; Provisional.
Length = 811
Score = 29.1 bits (66), Expect = 7.4
Identities = 12/21 (57%), Positives = 15/21 (71%), Gaps = 3/21 (14%)
Query: 372 IVGRTGAGKS---SLIAAIFR 389
+VG TGAGKS +L+A FR
Sbjct: 446 VVGPTGAGKSVLLALMALQFR 466
>gnl|CDD|184104 PRK13513, PRK13513, putative outer membrane receptor; Provisional.
Length = 659
Score = 29.4 bits (66), Expect = 7.7
Identities = 16/54 (29%), Positives = 28/54 (51%), Gaps = 4/54 (7%)
Query: 304 NHMISVKRLVEYTKLEPEGNLSPNYEDENEI----WPVLGKIEFQNTNVRYLSG 353
+H +S+ Y +L +GN P+ D N++ W + + E+Q TN L+G
Sbjct: 329 DHTLSLGGQYRYEELYDKGNQLPSASDLNKLTRWSWALFAEDEWQMTNDFALTG 382
>gnl|CDD|112137 pfam03308, ArgK, ArgK protein. The ArgK protein acts as an ATPase
enzyme and as a kinase, and phosphorylates periplasmic
binding proteins involved in the LAO (lysine, arginine,
ornithine)/AO transport systems.
Length = 267
Score = 28.9 bits (65), Expect = 7.8
Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 4/35 (11%)
Query: 370 IGIVGRTGAGKSSLIAAIFRLAEVEG----VIKID 400
+GI G GAGKS+LI A+ G V+ +D
Sbjct: 32 VGITGVPGAGKSTLIEALGMELRRRGHRVAVLAVD 66
>gnl|CDD|129833 TIGR00750, lao, LAO/AO transport system ATPase. In E. coli,
mutation of this kinase blocks phosphorylation of two
transporter system periplasmic binding proteins and
consequently inhibits those transporters. This kinase is
also found in Gram-positive bacteria, archaea, and the
roundworm C. elegans. It may have a more general, but
still unknown function. Mutations have also been found
that do not phosphorylate the periplasmic binding
proteins, yet still allow transport. The ATPase activity
of this protein seems to be necessary, however
[Transport and binding proteins, Amino acids, peptides
and amines, Regulatory functions, Protein interactions].
Length = 300
Score = 29.0 bits (65), Expect = 8.0
Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 4/35 (11%)
Query: 370 IGIVGRTGAGKSSLIAAIFRLAEVEG----VIKID 400
+GI G GAGKS+L+ A+ G VI +D
Sbjct: 37 VGITGTPGAGKSTLLEALGMELRRRGLRVAVIAVD 71
>gnl|CDD|217051 pfam02463, SMC_N, RecF/RecN/SMC N terminal domain. This domain is
found at the N terminus of SMC proteins. The SMC
(structural maintenance of chromosomes) superfamily
proteins have ATP-binding domains at the N- and
C-termini, and two extended coiled-coil domains
separated by a hinge in the middle. The eukaryotic SMC
proteins form two kind of heterodimers: the SMC1/SMC3
and the SMC2/SMC4 types. These heterodimers constitute
an essential part of higher order complexes, which are
involved in chromatin and DNA dynamics. This family also
includes the RecF and RecN proteins that are involved in
DNA metabolism and recombination.
Length = 1162
Score = 29.2 bits (65), Expect = 8.0
Identities = 9/16 (56%), Positives = 13/16 (81%)
Query: 372 IVGRTGAGKSSLIAAI 387
IVG G+GKS+++ AI
Sbjct: 28 IVGPNGSGKSNILDAI 43
>gnl|CDD|223610 COG0536, Obg, Predicted GTPase [General function prediction only].
Length = 369
Score = 29.1 bits (66), Expect = 8.2
Identities = 9/18 (50%), Positives = 15/18 (83%)
Query: 370 IGIVGRTGAGKSSLIAAI 387
+G+VG AGKS+L++A+
Sbjct: 162 VGLVGLPNAGKSTLLSAV 179
>gnl|CDD|223296 COG0218, COG0218, Predicted GTPase [General function prediction
only].
Length = 200
Score = 28.4 bits (64), Expect = 8.3
Identities = 9/17 (52%), Positives = 11/17 (64%)
Query: 373 VGRTGAGKSSLIAAIFR 389
GR+ GKSSLI A+
Sbjct: 30 AGRSNVGKSSLINALTN 46
>gnl|CDD|223561 COG0486, ThdF, Predicted GTPase [General function prediction only].
Length = 454
Score = 29.1 bits (66), Expect = 8.4
Identities = 10/18 (55%), Positives = 13/18 (72%)
Query: 369 KIGIVGRTGAGKSSLIAA 386
K+ I+GR GKSSL+ A
Sbjct: 219 KVVIIGRPNVGKSSLLNA 236
>gnl|CDD|129705 TIGR00618, sbcc, exonuclease SbcC. All proteins in this family for
which functions are known are part of an exonuclease
complex with sbcD homologs. This complex is involved in
the initiation of recombination to regulate the levels
of palindromic sequences in DNA. This family is based on
the phylogenomic analysis of JA Eisen (1999, Ph.D.
Thesis, Stanford University) [DNA metabolism, DNA
replication, recombination, and repair].
Length = 1042
Score = 29.2 bits (65), Expect = 8.4
Identities = 10/16 (62%), Positives = 14/16 (87%)
Query: 372 IVGRTGAGKSSLIAAI 387
I G+TGAGK++L+ AI
Sbjct: 31 ICGKTGAGKTTLLDAI 46
>gnl|CDD|237039 PRK12288, PRK12288, GTPase RsgA; Reviewed.
Length = 347
Score = 28.7 bits (65), Expect = 8.8
Identities = 14/29 (48%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
Query: 367 KEKIGI-VGRTGAGKSSLIAAIFRLAEVE 394
+I I VG++G GKSSLI A+ AE+
Sbjct: 204 TGRISIFVGQSGVGKSSLINALLPEAEIL 232
>gnl|CDD|180875 PRK07196, fliI, flagellum-specific ATP synthase; Validated.
Length = 434
Score = 28.7 bits (64), Expect = 9.0
Identities = 14/45 (31%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Query: 353 GPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAEVEGVI 397
G I L +TI +++G++ +G GKS L+ I R + + V+
Sbjct: 142 GVNAINGL-LTIGKGQRVGLMAGSGVGKSVLLGMITRYTQADVVV 185
>gnl|CDD|213239 cd03272, ABC_SMC3_euk, ATP-binding cassette domain of eukaryotic
SMC3 proteins. The structural maintenance of
chromosomes (SMC) proteins are large (approximately 110
to 170 kDa), and each is arranged into five recognizable
domains. Amino-acid sequence homology of SMC proteins
between species is largely confined to the amino- and
carboxy-terminal globular domains. The amino-terminal
domain contains a 'Walker A' nucleotide-binding domain
(GxxGxGKS/T, in the single-letter amino-acid code),
which by mutational studies has been shown to be
essential in several proteins. The carboxy-terminal
domain contains a sequence (the DA-box) that resembles a
'Walker B' motif, and a motif with homology to the
signature sequence of the ATP-binding cassette (ABC)
family of ATPases. The sequence homology within the
carboxy-terminal domain is relatively high within the
SMC1-SMC4 group, whereas SMC5 and SMC6 show some
divergence in both of these sequences. In eukaryotic
cells, the proteins are found as heterodimers of SMC1
paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6
(formerly known as Rad18).
Length = 243
Score = 28.4 bits (64), Expect = 9.2
Identities = 12/23 (52%), Positives = 17/23 (73%), Gaps = 1/23 (4%)
Query: 372 IVGRTGAGKSSLIAAI-FRLAEV 393
+VGR G+GKS+ AAI F L++
Sbjct: 28 VVGRNGSGKSNFFAAIRFVLSDE 50
>gnl|CDD|217631 pfam03595, C4dic_mal_tran, C4-dicarboxylate transporter/malic acid
transport protein. This family of transporters have ten
alpha helical transmembrane segments. The structure of a
bacterial homologue of SLAC1 shows it to have a trimeric
arrangement. The pore is composed of five helices with a
conserved phe residue involved in gating. One homologue,
Mae1 from the yeast Schizosaccharomyces pombe, functions
as a malate uptake transporter; another, Ssu1 from
Saccharomyces cerevisiae and other fungi including
Aspergillus fumigatus, is characterized as a sulphite
efflux pump; and TehA from Escherichia coli is
identified as a tellurite resistance protein by virtue
of its association in the tehA/tehB operon. Many
homologues are incorrectly annotated as tellurite
resistance/dicarboxylate transporter (TDT) proteins.
Length = 314
Score = 28.7 bits (65), Expect = 9.3
Identities = 9/43 (20%), Positives = 17/43 (39%)
Query: 247 MGFAYLIDFLCLLYLSTILISFFFFADIGGKVGLAVTQTMTLM 289
M LI+ L L + L ++ + + LA+ +L
Sbjct: 82 MALLTLINGLLLYGWAPALAYVLWWIGVALHLVLAIYIVFSLF 124
>gnl|CDD|130460 TIGR01393, lepA, GTP-binding protein LepA. LepA (GUF1 in
Saccaromyces) is a GTP-binding membrane protein related
to EF-G and EF-Tu. Two types of phylogenetic tree,
rooted by other GTP-binding proteins, suggest that
eukaryotic homologs (including GUF1 of yeast) originated
within the bacterial LepA family. The function is
unknown [Unknown function, General].
Length = 595
Score = 28.8 bits (65), Expect = 9.4
Identities = 17/60 (28%), Positives = 28/60 (46%), Gaps = 9/60 (15%)
Query: 333 EIWPVLGKIEFQNTNVRYLSGPRV---IKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFR 389
EI PV+ KI+ + + RV I+ + I + E I +TG G ++ AI +
Sbjct: 124 EIIPVINKIDLPSADP-----ERVKKEIEEV-IGLDASEAILASAKTGIGIEEILEAIVK 177
>gnl|CDD|232857 TIGR00176, mobB, molybdopterin-guanine dinucleotide biosynthesis
protein MobB. This molybdenum cofactor biosynthesis
enzyme is similar to the urease accessory protein UreG
and to the hydrogenase accessory protein HypB, both GTP
hydrolases involved in loading nickel into the
metallocenters of their respective target enzymes
[Biosynthesis of cofactors, prosthetic groups, and
carriers, Molybdopterin].
Length = 155
Score = 28.1 bits (63), Expect = 9.4
Identities = 14/44 (31%), Positives = 21/44 (47%), Gaps = 8/44 (18%)
Query: 370 IGIVGRTGAGKSSLIAAIFRLAEVEG----VIKID----DIDTE 405
+ IVG +GK++LI + + + G IK D DID
Sbjct: 2 LQIVGPKNSGKTTLIERLVKALKARGYRVATIKHDHHDFDIDKN 45
>gnl|CDD|206726 cd04163, Era, E. coli Ras-like protein (Era) is a multifunctional
GTPase. Era (E. coli Ras-like protein) is a
multifunctional GTPase found in all bacteria except some
eubacteria. It binds to the 16S ribosomal RNA (rRNA) of
the 30S subunit and appears to play a role in the
assembly of the 30S subunit, possibly by chaperoning the
16S rRNA. It also contacts several assembly elements of
the 30S subunit. Era couples cell growth with
cytokinesis and plays a role in cell division and energy
metabolism. Homologs have also been found in eukaryotes.
Era contains two domains: the N-terminal GTPase domain
and a C-terminal domain KH domain that is critical for
RNA binding. Both domains are important for Era
function. Era is functionally able to compensate for
deletion of RbfA, a cold-shock adaptation protein that
is required for efficient processing of the 16S rRNA.
Length = 168
Score = 27.8 bits (63), Expect = 9.6
Identities = 8/19 (42%), Positives = 13/19 (68%)
Query: 369 KIGIVGRTGAGKSSLIAAI 387
+ I+GR GKS+L+ A+
Sbjct: 5 FVAIIGRPNVGKSTLLNAL 23
>gnl|CDD|226054 COG3523, IcmF, Type VI protein secretion system component VasK
[Intracellular trafficking, secretion, and vesicular
transport].
Length = 1188
Score = 28.9 bits (65), Expect = 9.7
Identities = 10/36 (27%), Positives = 18/36 (50%), Gaps = 3/36 (8%)
Query: 372 IVGRTGAGKSSLI---AAIFRLAEVEGVIKIDDIDT 404
++G G+GK++ + F LAE G + + T
Sbjct: 130 VIGPPGSGKTTALLNSGLQFPLAEQMGALGLAGPGT 165
>gnl|CDD|232886 TIGR00231, small_GTP, small GTP-binding protein domain. Proteins
with a small GTP-binding domain recognized by this model
include Ras, RhoA, Rab11, translation elongation factor
G, translation initiation factor IF-2, tetratcycline
resistance protein TetM, CDC42, Era, ADP-ribosylation
factors, tdhF, and many others. In some proteins the
domain occurs more than once.This model recognizes a
large number of small GTP-binding proteins and related
domains in larger proteins. Note that the alpha chains
of heterotrimeric G proteins are larger proteins in
which the NKXD motif is separated from the GxxxxGK[ST]
motif (P-loop) by a long insert and are not easily
detected by this model [Unknown function, General].
Length = 162
Score = 28.1 bits (63), Expect = 9.7
Identities = 9/16 (56%), Positives = 11/16 (68%)
Query: 369 KIGIVGRTGAGKSSLI 384
KI IVG GKS+L+
Sbjct: 3 KIVIVGDPNVGKSTLL 18
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.322 0.137 0.395
Gapped
Lambda K H
0.267 0.0534 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 30,916,208
Number of extensions: 3134847
Number of successful extensions: 4801
Number of sequences better than 10.0: 1
Number of HSP's gapped: 4430
Number of HSP's successfully gapped: 624
Length of query: 597
Length of database: 10,937,602
Length adjustment: 102
Effective length of query: 495
Effective length of database: 6,413,494
Effective search space: 3174679530
Effective search space used: 3174679530
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 62 (28.1 bits)