RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy1502
(597 letters)
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance
regulator, residues 1193-1427...; CFTR, ABC transporter,
nucleotide binding domain, NBD; HET: B44; 2.70A {Homo
sapiens}
Length = 390
Score = 399 bits (1027), Expect = e-135
Identities = 81/242 (33%), Positives = 143/242 (59%), Gaps = 13/242 (5%)
Query: 312 LVEYTKLEPEGNLSPNYEDENEIWPVLGKIEFQNTNVRYLSG-PRVIKNLNITIHPKEKI 370
L+E + ++ + WP G++ ++ +Y G +++N++ +I P +++
Sbjct: 2 LIENSHVKKDDI-----------WPSGGQMTVKDLTAKYTEGGNAILENISFSISPGQRV 50
Query: 371 GIVGRTGAGKSSLIAAIFRLAEVEGVIKIDDIDTEDVPLSKLRSNISIIPQDPVLFSGTL 430
G++GRTG+GKS+L++A RL EG I+ID + + + L + R +IPQ +FSGT
Sbjct: 51 GLLGRTGSGKSTLLSAFLRLLNTEGEIQIDGVSWDSITLEQWRKAFGVIPQKVFIFSGTF 110
Query: 431 RKNLDPFEKYPDYVLWTALQEVELKDMIME-GAGLNMTVYEGGTNFSVGQRQLICLARAI 489
RKNLDP + D +W EV L+ +I + L+ + +GG S G +QL+CLAR++
Sbjct: 111 RKNLDPNAAHSDQEIWKVADEVGLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSV 170
Query: 490 VRNNVILVLDEATANVDPKTDLLIQRTIRKKFADCTVLTIAHRLHTIMDSDKVLVMDSGV 549
+ IL+LDE +A++DP T +I+RT+++ FADCTV+ R+ +++ D+ LV++
Sbjct: 171 LSKAKILLLDEPSAHLDPVTYQIIRRTLKQAFADCTVILCEARIEAMLECDQFLVIEENK 230
Query: 550 AV 551
Sbjct: 231 VR 232
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter,
lipid flippase, hydrolase, inner membrane, lipid
transport, membrane; HET: ANP; 3.70A {Salmonella
typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A*
3b5z_A* 3b5w_A
Length = 582
Score = 251 bits (643), Expect = 6e-76
Identities = 119/513 (23%), Positives = 229/513 (44%), Gaps = 48/513 (9%)
Query: 64 SYIGIYFSLIVGLFVA-GISRSTAFYSACM-----RCSKGIHKKMFEAVVYSPLAFFSTN 117
S + +++GL + GI+ + Y C+ + + +++F ++ P+AFF
Sbjct: 62 SVLLWMPLVVIGLMILRGITSYISSY--CISWVSGKVVMTMRRRLFGHMMGMPVAFFDKQ 119
Query: 118 PSGRILNRFSKDMGAVDEVLPKAMLDAAQGVMQVSGALIVSLSVNPLFSIPVLILL---- 173
+G +L+R + D V A++ + + G I+ + SI +++L
Sbjct: 120 STGTLLSRITYDSEQVASSSSGALITVVREGASIIGLFIMMFYYSWQLSIILVVLAPIVS 179
Query: 174 YLFWRLSKAYLRTSKSL-KYLEGVTRSPVFTHLNACLHGLPTIRAHGAAKILVEEFDYH- 231
+SK + SK++ + VT T L G + G ++ + FD
Sbjct: 180 IAIRVVSKRFRSISKNMQNTMGQVT-----TSAEQMLKGHKEVLIFGGQEVETKRFDKVS 234
Query: 232 QDLHSSTWHLFVYTNMGFAYLIDFLCLLYLSTILISFFFFADIGGKVGLAVTQT------ 285
+ + +++ +I + L L+ +L + + T
Sbjct: 235 NKMRLQGMKMVSASSISDP-IIQLIASLALAFVLY-------AASFPSVMDSLTAGTITV 286
Query: 286 -MTLMGVVQWAMRQAAEVENH----MISVKRLVEYTKLEPEGNLSPNYEDENEIWPVLGK 340
+ M + ++ V M + + L E E + E + I G
Sbjct: 287 VFSSMIALMRPLKSLTNVNAQFQRGMAACQTLFAILDSEQEKD-----EGKRVIDRATGD 341
Query: 341 IEFQNTNVRYLSGPR-VIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAEV-EGVIK 398
+EF+N Y ++N+N+ I + + +VGR+G+GKS++ + I R ++ EG I
Sbjct: 342 LEFRNVTFTYPGREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHIL 401
Query: 399 IDDIDTEDVPLSKLRSNISIIPQDPVLFSGTLRKN--LDPFEKYPDYVLWTALQEVELKD 456
+D D + L+ LR+ ++++ Q+ LF+ T+ N E+Y + A + D
Sbjct: 402 MDGHDLREYTLASLRNQVALVSQNVHLFNDTVANNIAYARTEEYSREQIEEAARMAYAMD 461
Query: 457 MIME-GAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATANVDPKTDLLIQR 515
I + GL+ + E G S GQRQ I +ARA++R++ IL+LDEAT+ +D +++ IQ
Sbjct: 462 FINKMDNGLDTIIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQA 521
Query: 516 TIRKKFADCTVLTIAHRLHTIMDSDKVLVMDSG 548
+ + + T L IAHRL TI +D+++V++ G
Sbjct: 522 ALDELQKNRTSLVIAHRLSTIEQADEIVVVEDG 554
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter,
lipid flippase, hydrolase, inner membrane, lipid
transport, membrane; 5.50A {Vibrio cholerae}
Length = 582
Score = 250 bits (640), Expect = 2e-75
Identities = 112/512 (21%), Positives = 229/512 (44%), Gaps = 44/512 (8%)
Query: 63 ESYIGIYFSLIVGLFVA-GISRSTAFYSACMRCSKGIH---KKMFEAVVYSPLAFFSTNP 118
+++ I +I+GL G+S + Y + +++F ++ P+ FF
Sbjct: 61 SNFLRILPFMILGLMFVRGLSGFASSYCLSWVSGNVVMQMRRRLFNHFMHMPVRFFDQES 120
Query: 119 SGRILNRFSKDMGAVDEVLPKAMLDAAQGVMQVSGALIVSLSVNPLFSIPVLILL----Y 174
+G +L+R + D V +A++ + + G L + + S+ ++++ +
Sbjct: 121 TGGLLSRITYDSEQVAGATSRALVSIVREGASIIGLLTLMFWNSWQLSLVLIVVAPVVAF 180
Query: 175 LFWRLSKAYLRTSKSL-KYLEGVTRSPVFTHLNACLHGLPTIRAHGAAKILVEEFDYH-Q 232
+SK + + S+++ + VT + L G + ++G ++ + FD
Sbjct: 181 AISFVSKRFRKISRNMQTAMGHVT-----SSAEQMLKGHKVVLSYGGQEVERKRFDKVSN 235
Query: 233 DLHSSTWHLFVYTNMGFAYLIDFLCLLYLSTILISFFFFADIGGKVGLAVTQT------- 285
+ T L ++ +I + L L +L + + T
Sbjct: 236 SMRQQTMKLVSAQSIADP-VIQMIASLALFAVLF-------LASVDSIRAELTPGTFTVV 287
Query: 286 MTLMGVVQWAMRQAAEVENH----MISVKRLVEYTKLEPEGNLSPNYEDENEIWPVLGKI 341
+ M + ++ V + M + + L LE E + + E V G++
Sbjct: 288 FSAMFGLMRPLKALTSVTSEFQRGMAACQTLFGLMDLETERD-----NGKYEAERVNGEV 342
Query: 342 EFQNTNVRYLSGPR-VIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAEV-EGVIKI 399
+ ++ Y + + +++ +I + + +VGR+G+GKS++ R +V G I +
Sbjct: 343 DVKDVTFTYQGKEKPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVDSGSICL 402
Query: 400 DDIDTEDVPLSKLRSNISIIPQDPVLFSGTLRKN--LDPFEKYPDYVLWTALQEVELKDM 457
D D D L+ LR + +++ Q+ LF+ T+ N +Y + A ++ +
Sbjct: 403 DGHDVRDYKLTNLRRHFALVSQNVHLFNDTIANNIAYAAEGEYTREQIEQAARQAHAMEF 462
Query: 458 IME-GAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATANVDPKTDLLIQRT 516
I GL+ + E GT+ S GQRQ + +ARA++R+ +L+LDEAT+ +D +++ IQ
Sbjct: 463 IENMPQGLDTVIGENGTSLSGGQRQRVAIARALLRDAPVLILDEATSALDTESERAIQAA 522
Query: 517 IRKKFADCTVLTIAHRLHTIMDSDKVLVMDSG 548
+ + + TVL IAHRL TI +D++LV+D G
Sbjct: 523 LDELQKNKTVLVIAHRLSTIEQADEILVVDEG 554
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION
channel, transport protein, casse protein; 2.00A {Homo
sapiens} PDB: 2onj_A* 2hyd_A
Length = 578
Score = 248 bits (635), Expect = 9e-75
Identities = 112/531 (21%), Positives = 217/531 (40%), Gaps = 45/531 (8%)
Query: 45 KIVNNTINQHHHFHLLSTESYIGIYFSLIVGLFV--AGISRSTAFYSACM--RCSKGIHK 100
++ IN H + + I + + + I K
Sbjct: 39 YAIDGVINNHALTTDEKVHHLTIAIGIALFIFVIVRPPIEFIRQYLAQWTSNKILYDIRK 98
Query: 101 KMFEAVVYSPLAFFSTNPSGRILNRFSKDMGAVDEVLPKAMLDAAQGVMQVSGALIVSLS 160
K++ + F++ N G++++R D+ + + +++ + + AL +
Sbjct: 99 KLYNHLQALSARFYANNQVGQVISRVINDVEQTKDFILTGLMNIWLDCITIIIALSIMFF 158
Query: 161 VNP------LFSIPVLILLYLFW--RLSKAYLRTSKSLKYLEGVTRSPVFTHLNACLHGL 212
++ LF P IL + RL K S++L + V L+ + G+
Sbjct: 159 LDVKLTLAALFIFPFYILTVYVFFGRLRKLTRERSQAL--------AEVQGFLHERVQGI 210
Query: 213 PTIRAHGAAKILVEEFDYHQDLHSSTWHLFVYTNMGFAYLIDFLCLLYLSTILISFF--F 270
+++ + FD + N I+ + + I++ +
Sbjct: 211 SVVKSFAIEDNEAKNFDKKNTNFLTRALKHTRWNAYSFAAINTV--TDIGPIIVIGVGAY 268
Query: 271 FADIGGKVGLAVTQT-MTLMGVVQWAMRQAAEVENH----MISVKRLVEYTKLEPEGNLS 325
A I G + + + + ++ +R+ S+ R+ + + +
Sbjct: 269 LA-ISGSITVGTLAAFVGYLELLFGPLRRLVASFTTLTQSFASMDRVFQLIDEDYD---I 324
Query: 326 PNYEDENEIWPVLGKIEFQNTNVRYLSGPR-VIKNLNITIHPKEKIGIVGRTGAGKSSLI 384
N I G+I+ + + +Y ++K++N++I E + VG +G GKS+LI
Sbjct: 325 KNGVGAQPIEIKQGRIDIDHVSFQYNDNEAPILKDINLSIEKGETVAFVGMSGGGKSTLI 384
Query: 385 AAIFRLAEV-EGVIKIDDIDTEDVPLSKLRSNISIIPQDPVLFSGTLRKNLDPFEKY--- 440
I R +V G I ID + +D LR+ I ++ QD +LFS T+++N+
Sbjct: 385 NLIPRFYDVTSGQILIDGHNIKDFLTGSLRNQIGLVQQDNILFSDTVKENI----LLGRP 440
Query: 441 --PDYVLWTALQEVELKDMIME-GAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILV 497
D + A + D IM G + V E G S GQ+Q + +AR + N IL+
Sbjct: 441 TATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLNNPPILI 500
Query: 498 LDEATANVDPKTDLLIQRTIRKKFADCTVLTIAHRLHTIMDSDKVLVMDSG 548
LDEAT+ +D +++ +IQ + D T L +AHRL TI +DK++V+++G
Sbjct: 501 LDEATSALDLESESIIQEALDVLSKDRTTLIVAHRLSTITHADKIVVIENG 551
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288;
multidrug transporter, transport protein; HET: ANP;
2.90A {Thermotoga maritima}
Length = 598
Score = 228 bits (584), Expect = 3e-67
Identities = 137/521 (26%), Positives = 237/521 (45%), Gaps = 65/521 (12%)
Query: 64 SYIGIYFSLIVGLFVAGISRSTAFYSACM-----RCSKGIHKKMFEAVVYSPLAFFSTNP 118
+ Y ++ ++ S M + K++FE + P+ FF P
Sbjct: 74 DLLPRYMLILGTIYALT-SLLFWLQGKIMLTLSQDVVFRLRKELFEKLQRVPVGFFDRTP 132
Query: 119 SGRILNRFSKDMGAVDEVLPKAMLDAAQGVMQVSGALIVSLSVNP------LFSIPVLIL 172
G I++R D+ ++ VL +++ G++ ++GA+I+ VN L +P+ +L
Sbjct: 133 HGDIISRVINDVDNINNVLGNSIIQFFSGIVTLAGAVIMMFRVNVILSLVTLSIVPLTVL 192
Query: 173 LYLFW--RLSKAYLRTSKSLKYLEGVTRSPVFTHLNACLHGLPTIRAHGAAKILVEEFD- 229
+ + K + + L L G + + GL I+ + +E+FD
Sbjct: 193 ITQIVSSQTRKYFYENQRVLGQLNG--------IIEEDISGLTVIKLFTREEKEMEKFDR 244
Query: 230 YHQDLHSSTWHLFVYTNMGFAYLIDFLCLLYLSTILISFFFFADIGGKVGLAVTQTMTLM 289
++ L +++ + L++ + L LIS F GG LA+ +T+
Sbjct: 245 VNESLRKVGTKAQIFSGV-LPPLMNMVN--NLGFALISGF-----GGW--LALKDIITV- 293
Query: 290 GVVQWA-----------MRQAAEVENHMIS----VKRLVEYTKLEPEGNLSPNYEDENEI 334
G + + + + N + +R+ E LE E + D E+
Sbjct: 294 GTIA-TFIGYSRQFTRPLNELSNQFNMIQMALASAERIFEILDLEEE----KDDPDAVEL 348
Query: 335 WPVLGKIEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAEV- 393
V G+IEF+N Y V+K++ I P +K+ +VG TG+GK++++ + R +V
Sbjct: 349 REVRGEIEFKNVWFSYDKKKPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDVD 408
Query: 394 EGVIKIDDIDTEDVPLSKLRSNISIIPQDPVLFSGTLRKNLDPFEKY-----PDYVLWTA 448
G I +D ID + S LRS+I I+ QD +LFS T+++NL KY D + A
Sbjct: 409 RGQILVDGIDIRKIKRSSLRSSIGIVLQDTILFSTTVKENL----KYGNPGATDEEIKEA 464
Query: 449 LQEVELKDMIME-GAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATANVDP 507
+ I G + + G + S GQRQL+ + RA + N IL+LDEAT+NVD
Sbjct: 465 AKLTHSDHFIKHLPEGYETVLTDNGEDLSQGQRQLLAITRAFLANPKILILDEATSNVDT 524
Query: 508 KTDLLIQRTIRKKFADCTVLTIAHRLHTIMDSDKVLVMDSG 548
KT+ IQ + K T + IAHRL+TI ++D ++V+ G
Sbjct: 525 KTEKSIQAAMWKLMEGKTSIIIAHRLNTIKNADLIIVLRDG 565
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial;
membrane protein, mitochondrial transport; HET: ACP LMT
CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Length = 595
Score = 222 bits (567), Expect = 9e-65
Identities = 119/555 (21%), Positives = 224/555 (40%), Gaps = 86/555 (15%)
Query: 45 KIVNNTINQHHHFHLLSTESYIGIYFSLIVGLFVAGISRSTAFYSACMRCSKGIHKKMFE 104
KI++ + + ++ + A R ++ R + +F
Sbjct: 44 KIIDVIYTNPTVDYSDNLTRLCLGLSAVFLCGAAANAIRVYLMQTSGQRIVNRLRTSLFS 103
Query: 105 AVVYSPLAFFSTNPSGRILNRFSKDMGAVDEVLPKAMLDAAQGVMQVSGALIVSLSVNP- 163
+++ +AFF +G ++NR S D + + + + D + Q S + + V+P
Sbjct: 104 SILRQEVAFFDKTRTGELINRLSSDTALLGRSVTENLSDGLRAGAQASVGISMMFFVSPN 163
Query: 164 -----LFSIPVLILLYLFW-----RLSKAYL-RTSKSLKYLEGVTRSPVFTHLNACLHGL 212
L +P + ++ + + +L+K +++ + E + +
Sbjct: 164 LATFVLSVVPPVSIIAVIYGRYLRKLTKVTQDSLAQATQLAEER------------IGNV 211
Query: 213 PTIRAHGAAKILVEEFD------YHQDLHSSTWHLFVYTNMGFAYLIDFLCLLYLSTILI 266
T+RA G +E++ + + G + + L +LY +L+
Sbjct: 212 RTVRAFGKEMTEIEKYASKVDHVMQLARKEAFARAGFFGATGLSGNLIVLSVLYKGGLLM 271
Query: 267 -----------SFFFFADIGGKVGLAVTQTMTLMGVVQWAMRQAAEVENHMISVKRLVEY 315
SF +A VG+++ + + A RL E
Sbjct: 272 GSAHMTVGELSSFLMYAFW---VGISIGGLSSFYSELMKG-LGAGG---------RLWEL 318
Query: 316 TKLEPEGNLSPNYEDENEIWPVLGKIEFQNTNVRYLSGP--RVIKNLNITIHPKEKIGIV 373
+ EP+ L N G +EF+N + Y + P + ++ +++I +V
Sbjct: 319 LEREPK--LPFNEGVILNEKSFQGALEFKNVHFAYPARPEVPIFQDFSLSIPSGSVTALV 376
Query: 374 GRTGAGKSSLIAAIFRLAEV-EGVIKIDDIDTEDVPLSKLRSNISIIPQDPVLFSGTLRK 432
G +G+GKS++++ + RL + G I +D D + LRS I + Q+P+LFS ++ +
Sbjct: 377 GPSGSGKSTVLSLLLRLYDPASGTISLDGHDIRQLNPVWLRSKIGTVSQEPILFSCSIAE 436
Query: 433 NLDPFEKY--PDYVLWTALQEVELKDMIMEGA--------------GLNMTVYEGGTNFS 476
N+ Y D T + I A G N V E G S
Sbjct: 437 NI----AYGADDPSSVT-------AEEIQRVAEVANAVAFIRNFPQGFNTVVGEKGVLLS 485
Query: 477 VGQRQLICLARAIVRNNVILVLDEATANVDPKTDLLIQRTIRKKFADCTVLTIAHRLHTI 536
GQ+Q I +ARA+++N IL+LDEAT+ +D + + L+Q + + TVL IAHRL TI
Sbjct: 486 GGQKQRIAIARALLKNPKILLLDEATSALDAENEYLVQEALDRLMDGRTVLVIAHRLSTI 545
Query: 537 MDSDKVLVMDSGVAV 551
+++ V V+D G
Sbjct: 546 KNANMVAVLDQGKIT 560
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic
peptide, membrane protein; 3.80A {Mus musculus} PDB:
3g61_A* 3g60_A*
Length = 1284
Score = 226 bits (577), Expect = 1e-63
Identities = 101/516 (19%), Positives = 209/516 (40%), Gaps = 47/516 (9%)
Query: 65 YIGIYFSLIVGLFVAGISRSTAFYSACMRCSKGIHKKMFEAVVYSPLAFFST--NPSGRI 122
+ ++ L + F+ + F A +K + +F++++ +++F N +G +
Sbjct: 751 FSLLFLILGIISFITFFLQGFTFGKAGEILTKRLRYMVFKSMLRQDVSWFDDPKNTTGAL 810
Query: 123 LNRFSKDMGAVDEVLPKAMLDAAQGVMQVSGALIVSLSVNP------LFSIPVLILL-YL 175
R + D V + Q + + +I+SL L +P++ + +
Sbjct: 811 TTRLANDAAQVKGATGSRLAVIFQNIANLGTGIIISLIYGWQLTLLLLAIVPIIAIAGVV 870
Query: 176 FWRLSKAYLRTSKSLKYLEGVTRSPVFTHLNACLHGLPTIRAHGAAKILVEEFDYHQD-- 233
++ K K LEG + + T+ + + +
Sbjct: 871 EMKMLSGQ--ALKDKKELEGSGK-----IATEAIENFRTVVSLTREQKFETMYAQSLQIP 923
Query: 234 LHSSTWHLFVY-TNMGFAYLIDFLC---LLYLSTILI-----SFF-FFADIGGKVGLAVT 283
++ V+ F + + L+ +F V A+
Sbjct: 924 YRNAMKKAHVFGITFSFTQAMMYFSYAAAFRFGAYLVTQQLMTFENVL-----LVFSAIV 978
Query: 284 QTMTLMGVVQWAMRQAAEVENHMISVKRLVEYTKLEPEGNLSPNYEDENEIWPVL-GKIE 342
M V Q A + +S ++ + PE +Y + +L G ++
Sbjct: 979 --FGAMAVGQ-VSSFAPDYAKATVSASHIIRIIEKTPE---IDSYSTQGLKPNMLEGNVQ 1032
Query: 343 FQNTNVRYLSGP--RVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAEV-EGVIKI 399
F Y + P V++ L++ + + + +VG +G GKS+++ + R + G + +
Sbjct: 1033 FSGVVFNYPTRPSIPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPMAGSVFL 1092
Query: 400 DDIDTEDVPLSKLRSNISIIPQDPVLFSGTLRKNL---DPFEKYPDYVLWTALQEVELKD 456
D + + + + LR+ + I+ Q+P+LF ++ +N+ D + A +E +
Sbjct: 1093 DGKEIKQLNVQWLRAQLGIVSQEPILFDCSIAENIAYGDNSRVVSYEEIVRAAKEANIHQ 1152
Query: 457 MIME-GAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATANVDPKTDLLIQR 515
I N V + GT S GQ+Q I +ARA+VR IL+LDEAT+ +D +++ ++Q
Sbjct: 1153 FIDSLPDKYNTRVGDKGTQLSGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQE 1212
Query: 516 TIRKKFADCTVLTIAHRLHTIMDSDKVLVMDSGVAV 551
+ K T + IAHRL TI ++D ++V+ +G
Sbjct: 1213 ALDKAREGRTCIVIAHRLSTIQNADLIVVIQNGKVK 1248
Score = 218 bits (558), Expect = 4e-61
Identities = 126/548 (22%), Positives = 228/548 (41%), Gaps = 48/548 (8%)
Query: 32 TAFVEMYGRSTFFKIVNNTINQHHHFHLLSTESYIGIYFSLI-VGLFVAGISRSTAFYSA 90
+F + S ++ + L + Y++ I G+ + + + + A
Sbjct: 76 DSFASVGNVSKNSTNMSEADKRAMFAKLEEEMTTYAYYYTGIGAGVLIVAYIQVSFWCLA 135
Query: 91 CMRCSKGIHKKMFEAVVYSPLAFFSTNPSGRILNRFSKDMGAVDEVLPKAMLDAAQGVMQ 150
R I +K F A++ + +F + G + R + D+ ++E + + Q +
Sbjct: 136 AGRQIHKIRQKFFHAIMNQEIGWFDVHDVGELNTRLTDDVSKINEGIGDKIGMFFQAMAT 195
Query: 151 VSGALIVSLSVNP------LFSIPVLILLYLFWRLSKAYLRTSKSLKYLEGVTRSPVFTH 204
G I+ + L PVL L W + T K L
Sbjct: 196 FFGGFIIGFTRGWKLTLVILAISPVLGLSAGIWAKILSSF-TDKELHAYAKAG-----AV 249
Query: 205 LNACLHGLPTIRAHGAAKILVEEFDYHQDLHSSTW---HLFVYTNMGFAYLIDFLC---L 258
L + T+ A G K +E ++ + + + +MG A+L+ +
Sbjct: 250 AEEVLAAIRTVIAFGGQKKELERYNNNLEEAKRLGIKKAITANISMGAAFLLIYASYALA 309
Query: 259 LYLSTILISF----------FFFADIGGKVGLAVTQTMTLMGVVQWAMRQAAEVENHMIS 308
+ T L+ FF+ + G +V Q + A R AA +I
Sbjct: 310 FWYGTSLVISKEYSIGQVLTVFFSVLIG--AFSVGQASPNIEAFANA-RGAAYEVFKII- 365
Query: 309 VKRLVEYTKLEPEGNLSPNYEDENEIWPVLGKIEFQNTNVRYLSGP--RVIKNLNITIHP 366
G+ N + G +EF+N + Y S +++K LN+ +
Sbjct: 366 -DNKPSIDSFSKSGHKPDN---------IQGNLEFKNIHFSYPSRKEVQILKGLNLKVKS 415
Query: 367 KEKIGIVGRTGAGKSSLIAAIFRLAE-VEGVIKIDDIDTEDVPLSKLRSNISIIPQDPVL 425
+ + +VG +G GKS+ + + RL + ++G++ ID D + + LR I ++ Q+PVL
Sbjct: 416 GQTVALVGNSGCGKSTTVQLMQRLYDPLDGMVSIDGQDIRTINVRYLREIIGVVSQEPVL 475
Query: 426 FSGTLRKNLDP-FEKYPDYVLWTALQEVELKDMIME-GAGLNMTVYEGGTNFSVGQRQLI 483
F+ T+ +N+ E + A++E D IM+ + V E G S GQ+Q I
Sbjct: 476 FATTIAENIRYGREDVTMDEIEKAVKEANAYDFIMKLPHQFDTLVGERGAQLSGGQKQRI 535
Query: 484 CLARAIVRNNVILVLDEATANVDPKTDLLIQRTIRKKFADCTVLTIAHRLHTIMDSDKVL 543
+ARA+VRN IL+LDEAT+ +D +++ ++Q + K T + IAHRL T+ ++D +
Sbjct: 536 AIARALVRNPKILLLDEATSALDTESEAVVQAALDKAREGRTTIVIAHRLSTVRNADVIA 595
Query: 544 VMDSGVAV 551
D GV V
Sbjct: 596 GFDGGVIV 603
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter,
transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Length = 587
Score = 212 bits (541), Expect = 4e-61
Identities = 108/426 (25%), Positives = 203/426 (47%), Gaps = 55/426 (12%)
Query: 153 GALIVSLSVNP------LFSIPVL--ILLYLFWRLSKAYLRTSKSLKYLEGVTRSPVFTH 204
G +++++S+N +F IP + + ++L + + + + +S + V R
Sbjct: 153 GGIVMAVSINVKLSSVLIFLIPPIVLLFVWLTKKGNPLFRKIQESTDEVNRVVRE----- 207
Query: 205 LNACLHGLPTIRAHGAAKILVEEFDY-HQDLHSSTWHLFVYTNMGFAYLIDFLCLLYLST 263
N L G+ +RA + E F ++ L S + ++ + FA + + +
Sbjct: 208 -N--LLGVRVVRAFRREEYENENFRKANESLRRSI--ISAFSLIVFALPLFIFIV-NMGM 261
Query: 264 ILISFF--FFADIGG-KVG--LAVTQ--TMTLMGVVQWAM------RQAAEVENHMISVK 310
I + +F ++G +A T + ++ R +A S K
Sbjct: 262 IAVLWFGGVLVRNNQMEIGSIMAYTNYLMQIMFSLMMIGNILNFIVRASA-------SAK 314
Query: 311 RLVEYTKLEPEGNLSPNYEDENEIWPVLGKIEFQNTNVRYLSGPR-VIKNLNITIHPKEK 369
R++E +P ++ + V G + F+N RY V+ +N ++ P
Sbjct: 315 RVLEVLNEKPAIE---EADNALALPNVEGSVSFENVEFRYFENTDPVLSGVNFSVKPGSL 371
Query: 370 IGIVGRTGAGKSSLIAAIFRLAEV-EGVIKIDDIDTEDVPLSKLRSNISIIPQDPVLFSG 428
+ ++G TG+GKS+L+ I RL + G +++D++D V L LR +IS +PQ+ VLFSG
Sbjct: 372 VAVLGETGSGKSTLMNLIPRLIDPERGRVEVDELDVRTVKLKDLRGHISAVPQETVLFSG 431
Query: 429 TLRKNLDPFEKY-----PDYVLWTALQEVELKDMIME-GAGLNMTVYEGGTNFSVGQRQL 482
T+++NL K+ D + A + ++ D I+ G + V GG NFS GQ+Q
Sbjct: 432 TIKENL----KWGREDATDDEIVEAAKIAQIHDFIISLPEGYDSRVERGGRNFSGGQKQR 487
Query: 483 ICLARAIVRNNVILVLDEATANVDPKTDLLIQRTIRKKFADCTVLTIAHRLHTIMDSDKV 542
+ +ARA+V+ +L+LD+ T++VDP T+ I +++ CT I ++ T + +DK+
Sbjct: 488 LSIARALVKKPKVLILDDCTSSVDPITEKRILDGLKRYTKGCTTFIITQKIPTALLADKI 547
Query: 543 LVMDSG 548
LV+ G
Sbjct: 548 LVLHEG 553
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease
protein; asymmetric dimer, tetramer, P-glycoprotein;
HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Length = 243
Score = 194 bits (495), Expect = 4e-58
Identities = 67/216 (31%), Positives = 113/216 (52%), Gaps = 6/216 (2%)
Query: 341 IEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAEV-EGVIKI 399
+ ++ + Y +++++++ P I G +G GKS++ + + R + G I I
Sbjct: 2 LSARHVDFAYDDSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITI 61
Query: 400 DDIDTEDVPLSKLRSNISIIPQDPVLFSGTLRKNLDPFEKYPDYV---LWTALQEVELKD 456
D +++ L RS I + QD + +GT+R+NL + DY LW L +
Sbjct: 62 DGQPIDNISLENWRSQIGFVSQDSAIMAGTIRENL-TYGLEGDYTDEDLWQVLDLAFARS 120
Query: 457 MIME-GAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATANVDPKTDLLIQR 515
+ LN V E G S GQRQ + +ARA +RN IL+LDEATA++D +++ ++Q+
Sbjct: 121 FVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQK 180
Query: 516 TIRKKFADCTVLTIAHRLHTIMDSDKVLVMDSGVAV 551
+ T L IAHRL TI+D+DK+ ++ G
Sbjct: 181 ALDSLMKGRTTLVIAHRLSTIVDADKIYFIEKGQIT 216
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB;
ABC-transporter, transport protein; HET: ADP; 1.60A
{Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A*
2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Length = 247
Score = 191 bits (487), Expect = 4e-57
Identities = 78/227 (34%), Positives = 118/227 (51%), Gaps = 20/227 (8%)
Query: 337 VLGKIEFQNTNVRYL-SGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAEV-E 394
I F+N RY P ++ N+N++I E IGIVGR+G+GKS+L I R
Sbjct: 4 HHHDITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPEN 63
Query: 395 GVIKIDDIDTEDVPLSKLRSNISIIPQDPVLFSGTLRKNLDPFEKY--PDYVLWTALQEV 452
G + ID D + LR + ++ QD VL + ++ N+ P ++++V
Sbjct: 64 GQVLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNI----SLANPG----MSVEKV 115
Query: 453 EL-------KDMIME-GAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATAN 504
D I E G N V E G S GQRQ I +ARA+V N IL+ DEAT+
Sbjct: 116 IYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSA 175
Query: 505 VDPKTDLLIQRTIRKKFADCTVLTIAHRLHTIMDSDKVLVMDSGVAV 551
+D +++ +I R + K TV+ IAHRL T+ ++D+++VM+ G V
Sbjct: 176 LDYESEHVIMRNMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIV 222
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter,
ABCB6, nucleotide binding domain, heme BIOS transport
protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A*
3nhb_A*
Length = 306
Score = 192 bits (490), Expect = 9e-57
Identities = 77/250 (30%), Positives = 137/250 (54%), Gaps = 14/250 (5%)
Query: 306 MISVKRLVEYTKLEPEGNLSPNYEDENEIWPVLGKIEFQNTNVRYLSGPRVIKNLNITIH 365
I ++ + + K E E + + G+IEF+N + Y G +++++ T+
Sbjct: 22 FIDMENMFDLLKEETE---VKDLPGAGPLRFQKGRIEFENVHFSYADGRETLQDVSFTVM 78
Query: 366 PKEKIGIVGRTGAGKSSLIAAIFRLAEV-EGVIKIDDIDTEDVPLSKLRSNISIIPQDPV 424
P + + +VG +GAGKS+++ +FR ++ G I+ID D V + LRS+I ++PQD V
Sbjct: 79 PGQTLALVGPSGAGKSTILRLLFRFYDISSGCIRIDGQDISQVTQASLRSHIGVVPQDTV 138
Query: 425 LFSGTLRKNLDPFEKY-----PDYVLWTALQEVELKDMIME-GAGLNMTVYEGGTNFSVG 478
LF+ T+ N+ +Y + + A Q + D IM G V E G S G
Sbjct: 139 LFNDTIADNI----RYGRVTAGNDEVEAAAQAAGIHDAIMAFPEGYRTQVGERGLKLSGG 194
Query: 479 QRQLICLARAIVRNNVILVLDEATANVDPKTDLLIQRTIRKKFADCTVLTIAHRLHTIMD 538
++Q + +AR I++ I++LDEAT+ +D + IQ ++ K A+ T + +AHRL T+++
Sbjct: 195 EKQRVAIARTILKAPGIILLDEATSALDTSNERAIQASLAKVCANRTTIVVAHRLSTVVN 254
Query: 539 SDKVLVMDSG 548
+D++LV+ G
Sbjct: 255 ADQILVIKDG 264
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural
genomics, structural genomics consortium, SGC; 2.20A
{Plasmodium yoelii yoelii str}
Length = 260
Score = 189 bits (483), Expect = 3e-56
Identities = 67/233 (28%), Positives = 118/233 (50%), Gaps = 12/233 (5%)
Query: 327 NYEDENEIWPVLGKIEFQNTNVRYLSGPR--VIKNLNITIHPKEKIGIVGRTGAGKSSLI 384
++ + IEF + N Y +K++N I +VG TG+GKS++
Sbjct: 4 SFSLTSHEKKFGVNIEFSDVNFSYPKQTNHRTLKSINFFIPSGTTCALVGHTGSGKSTIA 63
Query: 385 AAIFRLAEVEGVIKIDDIDTEDVPLSKLRSNISIIPQDPVLFSGTLRKNLDPFEKY---- 440
++R + EG IKI + + +RS I I+PQD +LF+ T++ N+ Y
Sbjct: 64 KLLYRFYDAEGDIKIGGKNVNKYNRNSIRSIIGIVPQDTILFNETIKYNI----LYGKLD 119
Query: 441 -PDYVLWTALQEVELKDMIME-GAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVL 498
D + A + +L D I + V G S G+RQ I +AR ++++ I++
Sbjct: 120 ATDEEVIKATKSAQLYDFIEALPKKWDTIVGNKGMKLSGGERQRIAIARCLLKDPKIVIF 179
Query: 499 DEATANVDPKTDLLIQRTIRKKFADCTVLTIAHRLHTIMDSDKVLVMDSGVAV 551
DEAT+++D KT+ L Q+ + + T++ IAHRL TI ++ +++++ G V
Sbjct: 180 DEATSSLDSKTEYLFQKAVEDLRKNRTLIIIAHRLSTISSAESIILLNKGKIV 232
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP;
2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Length = 271
Score = 167 bits (426), Expect = 6e-48
Identities = 61/235 (25%), Positives = 108/235 (45%), Gaps = 30/235 (12%)
Query: 336 PVLGKIEFQNTNVRYLSGP--RVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAE- 392
+ G ++FQ+ + Y + P +V++ L T++P + +VG G+GKS++ A + L +
Sbjct: 12 NMKGLVKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQP 71
Query: 393 VEGVIKIDDIDTEDVPLSKLRSNISIIPQDPVLFSGTLRKNLDPFEKYPDYVLWTALQEV 452
G + +D L + ++ + Q+P+LF + R+N+ Y L
Sbjct: 72 TGGKVLLDGEPLVQYDHHYLHTQVAAVGQEPLLFGRSFRENI----AY-------GLTRT 120
Query: 453 ELKDMIMEGA--------------GLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVL 498
+ I A G + V E G S GQRQ + LARA++R +L+L
Sbjct: 121 PTMEEITAVAMESGAHDFISGFPQGYDTEVGETGNQLSGGQRQAVALARALIRKPRLLIL 180
Query: 499 DEATANVDPKTDLLIQRTIRK--KFADCTVLTIAHRLHTIMDSDKVLVMDSGVAV 551
D AT+ +D L +QR + + ++A TVL I +L + +L + G
Sbjct: 181 DNATSALDAGNQLRVQRLLYESPEWASRTVLLITQQLSLAERAHHILFLKEGSVC 235
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding
cassette, transport protein; HET: ATP; 2.05A {Homo
sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A*
1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A*
1xfa_A*
Length = 290
Score = 118 bits (299), Expect = 4e-30
Identities = 56/253 (22%), Positives = 105/253 (41%), Gaps = 32/253 (12%)
Query: 306 MISVKRLVEYTKLEPEGNLSPNYEDEN--EIWPVLGKIEFQNTNVRYLSGPRVIKNLNIT 363
+ ++ + + + ++ N + + F N L G V+K++N
Sbjct: 4 EVVMENVTAFWEEGFGELFEKAKQNNNNRKTSNGDDSLSFSNF---SLLGTPVLKDINFK 60
Query: 364 IHPKEKIGIVGRTGAGKSSLIAAIFR-LAEVEGVIKIDDIDTEDVPLSKLRSNISIIPQD 422
I + + + G TGAGK+SL+ I L EG IK IS Q+
Sbjct: 61 IERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKH-------------SGRISFCSQN 107
Query: 423 PVLFSGTLRKN-----LDPFEKYPDYVLWTALQEVELKDMIMEGAGLNMT-VYEGGTNFS 476
+ GT+++N D +Y + L+ +D+ + + EGG S
Sbjct: 108 SWIMPGTIKENIIGVSYDE-YRYRSVIKACQLE----EDISKFAEK-DNIVLGEGGITLS 161
Query: 477 VGQRQLICLARAIVRNNVILVLDEATANVDPKT-DLLIQRTIRKKFADCTVLTIAHRLHT 535
GQR I LARA+ ++ + +LD +D T + + + K A+ T + + ++
Sbjct: 162 GGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEH 221
Query: 536 IMDSDKVLVMDSG 548
+ +DK+L++ G
Sbjct: 222 LKKADKILILHEG 234
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC
transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo
sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A
1ckz_A
Length = 229
Score = 109 bits (275), Expect = 2e-27
Identities = 54/219 (24%), Positives = 96/219 (43%), Gaps = 27/219 (12%)
Query: 339 GKIEFQNTNVRY-LSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFR-LAEVEGV 396
++ +N + G V+K++N I + + + G TGAGK+SL+ I L EG
Sbjct: 5 TEVVMENVTAFWEEGGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGK 64
Query: 397 IKIDDIDTEDVPLSKLRSNISIIPQDPVLFSGTLRKN------LDPFEKYPDYVLWTALQ 450
IK IS Q + GT+++N D +Y + L+
Sbjct: 65 IKH-------------SGRISFCSQFSWIMPGTIKENIIFGVSYDE-YRYRSVIKACQLE 110
Query: 451 EVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATANVDPKT- 509
+D+ N+ + EGG S GQR I LARA+ ++ + +LD +D T
Sbjct: 111 ----EDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTE 166
Query: 510 DLLIQRTIRKKFADCTVLTIAHRLHTIMDSDKVLVMDSG 548
+ + + K A+ T + + ++ + +DK+L++ G
Sbjct: 167 KEIFESCVCKLMANKTRILVTSKMEHLKKADKILILHEG 205
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins,
MRP1/ABCC1, nucleotide-binding domain, ATP- binding,
hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Length = 237
Score = 100 bits (252), Expect = 3e-24
Identities = 53/222 (23%), Positives = 98/222 (44%), Gaps = 29/222 (13%)
Query: 338 LGKIEFQNTNVRY-LSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFR-LAEVEG 395
+ I +N + S P + + +I + +VG+ G GKSSL++A+ + +VEG
Sbjct: 1 MNSITVRNATFTWARSDPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEG 60
Query: 396 VIKIDDIDTEDVPLSKLRSNISIIPQDPVLFSGTLRKN------LDPFEKYPDYVLWTAL 449
+ I + +++ +PQ + + +LR+N L+ Y + AL
Sbjct: 61 HVAI-------------KGSVAYVPQQAWIQNDSLRENILFGCQLEE-PYYRSVIQACAL 106
Query: 450 QEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATANVDPKT 509
D+ + +G + E G N S GQ+Q + LARA+ N I + D+ + VD
Sbjct: 107 L----PDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHV 162
Query: 510 -DLLIQRTIRKK--FADCTVLTIAHRLHTIMDSDKVLVMDSG 548
+ + I K + T + + H + + D ++VM G
Sbjct: 163 GKHIFENVIGPKGMLKNKTRILVTHSMSYLPQVDVIIVMSGG 204
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell
membrane, cobalt transport, hydrolase, ION transport;
2.30A {Clostridium perfringens atcc 13124}
Length = 275
Score = 99.5 bits (249), Expect = 2e-23
Identities = 59/226 (26%), Positives = 97/226 (42%), Gaps = 31/226 (13%)
Query: 341 IEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLI---AAIFRLAEVEGVI 397
++ + N Y G +K +N+ I E I+G G GKS+L I L G I
Sbjct: 8 LKVEELNYNYSDGTHALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGI--LKPSSGRI 65
Query: 398 KID--DIDTEDVPLSKLRSNISIIPQDPV--LFSGTLRK-------NLD-PFEKYPDYVL 445
D ID + KLR +I I+ QDP LFS ++ + N+ P ++ V
Sbjct: 66 LFDNKPIDYSRKGIMKLRESIGIVFQDPDNQLFSASVYQDVSFGAVNMKLPEDEIRKRVD 125
Query: 446 WTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATANV 505
AL+ ++ + + + S GQ++ + +A +V +L+LDE TA +
Sbjct: 126 N-ALKRTGIEHL------KDKPTHC----LSFGQKKRVAIAGVLVMEPKVLILDEPTAGL 174
Query: 506 DPKTDLLIQRTIRK--KFADCTVLTIAHRLHTIMD-SDKVLVMDSG 548
DP I + + + K T++ H + + D V VM G
Sbjct: 175 DPMGVSEIMKLLVEMQKELGITIIIATHDIDIVPLYCDNVFVMKEG 220
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt
transport, TM02 hydrolase, inner membrane, membrane,
nucleotide-binding; 2.30A {Thermotoga maritima}
Length = 266
Score = 97.3 bits (243), Expect = 9e-23
Identities = 56/229 (24%), Positives = 102/229 (44%), Gaps = 36/229 (15%)
Query: 340 KIEFQNTNVRYLSGP----RVIKNLNITIHPKEKIGIVGRTGAGKSSLI---AAIFRLAE 392
+IE N + + G + ++N+++ I+ E + + G TG+GKS+L+ A + +
Sbjct: 2 RIEVVNVSHIFHRGTPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGL--IEP 59
Query: 393 VEGVIKIDDIDTEDVPLSKLRSNISIIPQDPV--LFSGTLRK-------NLDPFEKYPDY 443
G + D + ++R NI I Q P F+ + N P
Sbjct: 60 TSGDVLYDGERKK---GYEIRRNIGIAFQYPEDQFFAERVFDEVAFAVKNFYPDRD---- 112
Query: 444 VLWTALQEVELKDMIMEGAGLNMTVYEGGTNF--SVGQRQLICLARAIVRNNVILVLDEA 501
V L ME GL+ ++ F S G+++ + +A IV IL+LDE
Sbjct: 113 -------PVPLVKKAMEFVGLDFDSFKDRVPFFLSGGEKRRVAIASVIVHEPDILILDEP 165
Query: 502 TANVDPKTDLLIQRTIRK-KFADCTVLTIAHRLHTIMD-SDKVLVMDSG 548
+D + + R + K K TV+ I+H + T+++ D+V+V++ G
Sbjct: 166 LVGLDREGKTDLLRIVEKWKTLGKTVILISHDIETVINHVDRVVVLEKG 214
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET:
ATP; NMR {Saccharomyces cerevisiae}
Length = 608
Score = 96.6 bits (241), Expect = 3e-21
Identities = 53/308 (17%), Positives = 105/308 (34%), Gaps = 51/308 (16%)
Query: 250 AYLIDFLCLLYLSTILISFFFFADIGGKVGLAVTQTMTLMGVVQWAMRQAAEVENHMISV 309
YL DF+C++Y + G VT + E N +
Sbjct: 285 DYLSDFVCIIY------------GVPSVYG-VVTLPAS-----------VREGINIFLDG 320
Query: 310 KRLVEYTKLEPEGNLSPNYEDENEIWPVLGKIEFQNTNVRYLSGPRVIKNLNITIHPKEK 369
E + E + ++ F +++ G V+ E
Sbjct: 321 HIPAENLRFRTEALQFRIADATEDLQNDSASRAFSYPSLKKTQGDFVLNVEEGEFSDSEI 380
Query: 370 IGIVGRTGAGKSSLIAAIFRLAEVEGVIKIDD-IDTEDVPLSKLRSNISIIPQDPV--LF 426
+ ++G G GK++LI + G +K D+ D + +S I+ V LF
Sbjct: 381 LVMMGENGTGKTTLIKLL------AGALKPDEGQDIPKLNVSMKPQKIAPKFPGTVRQLF 434
Query: 427 SGTLRKNLDPFEKYPDYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLA 486
+R + D ++ + + D+ ++ V S G+ Q + +
Sbjct: 435 FKKIRGQFLNPQFQTD-----VVKPLRIDDI------IDQEVQH----LSGGELQRVAIV 479
Query: 487 RAIVRNNVILVLDEATANVDPKTDLLIQRTIRK--KFADCTVLTIAHRLHTIMD-SDKVL 543
A+ I ++DE +A +D + ++ + IR+ T + H +DKV+
Sbjct: 480 LALGIPADIYLIDEPSAYLDSEQRIICSKVIRRFILHNKKTAFIVEHDFIMATYLADKVI 539
Query: 544 VMDSGVAV 551
V + +
Sbjct: 540 VFEGIPSK 547
Score = 88.5 bits (220), Expect = 1e-18
Identities = 43/238 (18%), Positives = 89/238 (37%), Gaps = 36/238 (15%)
Query: 338 LGKIEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLA-----E 392
L + RY S + T P + +G+VG G GKS+ + +
Sbjct: 75 LPTNLEAHVTHRY-SANSFKLHRLPTPRPGQVLGLVGTNGIGKSTALKILAGKQKPNLGR 133
Query: 393 VEGVIKIDDI-------DTEDVPLSKLRSNISIIPQDPVLF------SGTLRKNLD---- 435
+ + +I + ++ L +I I + + G ++K +
Sbjct: 134 FDDPPEWQEIIKYFRGSELQNYFTKMLEDDIKAIIKPQYVDNIPRAIKGPVQKVGELLKL 193
Query: 436 PFEKYPDYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVI 495
EK P+ V ++ ++L+++ L + + S G+ Q + + V+ +
Sbjct: 194 RMEKSPEDVKR-YIKILQLENV------LKRDIEK----LSGGELQRFAIGMSCVQEADV 242
Query: 496 LVLDEATANVDPKTDLLIQRTIRK-KFADCTVLTIAHRLHTIMD-SDKVLVMDSGVAV 551
+ DE ++ +D K L + IR V+ + H L + SD V ++ +V
Sbjct: 243 YMFDEPSSYLDVKQRLNAAQIIRSLLAPTKYVICVEHDLSVLDYLSDFVCIIYGVPSV 300
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural
genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Length = 263
Score = 91.6 bits (228), Expect = 6e-21
Identities = 46/217 (21%), Positives = 88/217 (40%), Gaps = 26/217 (11%)
Query: 341 IEFQNTNVRYLSGPR---VIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAEVEGVI 397
I+ +N + ++N+N+ + EK+ I+G G+GK++L+ AI L G I
Sbjct: 2 IQLKNVGITLSGKGYERFSLENINLEV-NGEKVIILGPNGSGKTTLLRAISGLLPYSGNI 60
Query: 398 KIDDIDTEDVPLSKLRSNISIIPQDPVLFSG--TLRKNLD---PFEKYPDYVLWTALQEV 452
I+ ++ + K+R+ I P + T+ + + + L+ +
Sbjct: 61 FINGME-----VRKIRNYIRYSTNLPEAYEIGVTVNDIVYLYEELKGLDRDLFLEMLKAL 115
Query: 453 ELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATANVDPKTDLL 512
+L + I L +Y+ S GQ L+ + A+ I+ LDE NVD +
Sbjct: 116 KLGEEI-----LRRKLYK----LSAGQSVLVRTSLALASQPEIVGLDEPFENVDAARRHV 166
Query: 513 IQRTIRKKFADCTVLTIAHRLHTIMD-SDKVLVMDSG 548
I R I++ + + H L + + G
Sbjct: 167 ISRYIKEYGK--EGILVTHELDMLNLYKEYKAYFLVG 201
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette,
hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Length = 279
Score = 91.9 bits (229), Expect = 7e-21
Identities = 37/229 (16%), Positives = 87/229 (37%), Gaps = 32/229 (13%)
Query: 341 IEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAE-VEGVIKI 399
I+ G ++K ++ I +K + G GAGK++L+ + G + +
Sbjct: 22 IQLDQIGRMK-QGKTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATSGTVNL 80
Query: 400 D--DIDTEDVPLSKLRSNISIIPQDPVLFSGTLRKNLDPFEKYPDYVL---------WTA 448
+R +I + L + E+ D V+ +
Sbjct: 81 FGKMPGKVGYSAETVRQHIGFVSHS-------LLEKFQEGERVIDVVISGAFKSIGVYQD 133
Query: 449 LQEVELK--DMIMEGAGLNMTVYEGGTNF---SVGQRQLICLARAIVRNNVILVLDEATA 503
+ + +++ G++ + S G++Q + +ARA++ +L+LDE A
Sbjct: 134 IDDEIRNEAHQLLKLVGMS---AKAQQYIGYLSTGEKQRVMIARALMGQPQVLILDEPAA 190
Query: 504 NVDPKT-DLLIQ--RTIRKKFADCTVLTIAHRLHTIMDS-DKVLVMDSG 548
+D + L+ ++ + ++ + H + I + K+L++ G
Sbjct: 191 GLDFIARESLLSILDSLSDSYPTLAMIYVTHFIEEITANFSKILLLKDG 239
>1sgw_A Putative ABC transporter; structural genomics, P protein structure
initiative, southeast collaboratory for S genomics,
secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Length = 214
Score = 86.8 bits (216), Expect = 1e-19
Identities = 35/227 (15%), Positives = 86/227 (37%), Gaps = 40/227 (17%)
Query: 340 KIEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAE-VEGVIK 398
K+E ++ +V Y V++ + +TI + G G GK++L+ I + ++G I
Sbjct: 10 KLEIRDLSVGY--DKPVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEII 67
Query: 399 IDDIDTEDVPLSKLRSNISIIPQDPVL-----------FSGTLRKNLDPFEKYPDYVLWT 447
+ + ++K++ I +P++ ++ +L + + L
Sbjct: 68 YNGVP-----ITKVKGKIFFLPEEIIVPRKISVEDYLKAVASL-YGVKVNKNEIMDAL-- 119
Query: 448 ALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATANVDP 507
+ VE+ D+ + S G + + LA ++ N I VLD+ +D
Sbjct: 120 --ESVEVLDL-------KKKL----GELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDE 166
Query: 508 KTDLLIQRTIRKKFAD--CTVLTIAHRLHTIMDSDKVLVMDSGVAVV 552
+ + ++I + + ++ + + D + +
Sbjct: 167 DSKHKVLKSILEILKEKGIVII-SSR--EELSYCDVNENLHKYSTKI 210
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur
cluster, adenosine diphosphate, nucleotide-binding; HET:
ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Length = 607
Score = 87.4 bits (217), Expect = 3e-18
Identities = 44/231 (19%), Positives = 88/231 (38%), Gaps = 33/231 (14%)
Query: 344 QNTNVRYLSGPRVIKNLNI-TIHPKEKIGIVGRTGAGKSSLIAAIFRL-------AEVEG 395
++ RY G + + +GIVG G GK++ + +
Sbjct: 95 EDCVHRY--GVNAFVLYRLPIVKDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSW 152
Query: 396 VIKIDDIDTEDVP--LSKLRSN-ISIIPQ------DPVLFSGTLRKNLDPFEKYPDYVLW 446
I ++ +L++ I + + P G +R+ L ++
Sbjct: 153 DNVIRAFRGNELQNYFERLKNGEIRPVVKPQYVDLLPKAVKGKVRELLKKVDE------V 206
Query: 447 TALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATANVD 506
+EV +K++ +E L+ +++ S G+ Q + +A A++R DE ++ +D
Sbjct: 207 GKFEEV-VKELELENV-LDRELHQ----LSGGELQRVAIAAALLRKAHFYFFDEPSSYLD 260
Query: 507 PKTDLLIQRTIRK-KFADCTVLTIAHRLHTIMD-SDKVLVMDSGVAVVSSF 555
+ L + R IR+ VL + H L + SD + V+ V F
Sbjct: 261 IRQRLKVARVIRRLANEGKAVLVVEHDLAVLDYLSDVIHVVYGEPGVYGIF 311
Score = 81.6 bits (202), Expect = 2e-16
Identities = 52/262 (19%), Positives = 101/262 (38%), Gaps = 33/262 (12%)
Query: 343 FQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAE-VEGVIKIDD 401
+ + G ++ I E IGIVG G GK++ + + + E EG ++ D
Sbjct: 358 VEYPRLVKDYGSFKLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWD- 416
Query: 402 IDTEDVPLSKLRSNISIIPQDPV--LFSGTLRKNLDPFEKYPDYVLWTALQEVELKDMIM 459
+ ++ I + V L S L+ + L+ + + D+
Sbjct: 417 -----LTVAYKPQYIKAEYEGTVYELLSKIDSSKLNSNFYKTE-----LLKPLGIIDL-- 464
Query: 460 EGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATANVDPKTDLLIQRTIRK 519
+ V + S G+ Q + +A ++R+ I +LDE +A +D + L + R IR
Sbjct: 465 ----YDRNVED----LSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRH 516
Query: 520 --KFADCTVLTIAHRLHTIMD-SDKVLVMDSGVAVVSSFGFFFSKDLIEGTVSA-KVLSS 575
+ + T L + H + I SD+++V + + EG +
Sbjct: 517 LMEKNEKTALVVEHDVLMIDYVSDRLIVFEGEPGRHGRALPPMG--MREGMNRFLASVGI 574
Query: 576 RKRREKED---RIGESQSFRER 594
RR+ + R + S ++R
Sbjct: 575 TFRRDPDSGRPRANKEGSVKDR 596
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I
ABC type importer, methionine uptake transporter,
membrane protein; HET: ADP; 2.90A {Escherichia coli}
PDB: 3tuj_C 3tuz_C* 3dhw_C
Length = 366
Score = 84.3 bits (209), Expect = 9e-18
Identities = 64/232 (27%), Positives = 106/232 (45%), Gaps = 34/232 (14%)
Query: 341 IEFQNTNVRYLSGPRVI---KNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAEV-EGV 396
I+ N + G R I N+++ + + G++G +GAGKS+LI + L EG
Sbjct: 25 IKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGS 84
Query: 397 IKIDDIDTEDVP---LSKLRSNISIIPQDPVLFSG-TLRKNLD-PFE--KYPDYVLWTAL 449
+ +D + + L+K R I +I Q L S T+ N+ P E P + +
Sbjct: 85 VLVDGQELTTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRV 144
Query: 450 QE----VELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATANV 505
E V L D Y +N S GQ+Q + +ARA+ N +L+ D+AT+ +
Sbjct: 145 TELLSLVGLGD--------KHDSYP--SNLSGGQKQRVAIARALASNPKVLLCDQATSAL 194
Query: 506 DPKT-----DLLIQRTIRKKFADCTVLTIAHRLHTIMD-SDKVLVMDSGVAV 551
DP T +LL + I ++ T+L I H + + D V V+ +G +
Sbjct: 195 DPATTRSILELL--KDINRRL-GLTILLITHEMDVVKRICDCVAVISNGELI 243
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane,
membrane, transmembrane, transport, ATP- binding,
hydrolase, nucleotide-binding, periplasm; HET: 1PE;
2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Length = 249
Score = 82.2 bits (204), Expect = 9e-18
Identities = 37/217 (17%), Positives = 84/217 (38%), Gaps = 24/217 (11%)
Query: 348 VRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAEVEGVIKIDDIDTEDV 407
++ ++ + L+ + E + +VG GAGKS+L+A + + +G I+ E
Sbjct: 7 LQDVAESTRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSGKGSIQFAGQPLEAW 66
Query: 408 PLSKLRSNISIIPQDPVL-FSGTLRKNLDPFEKYPDYVLW--TALQEVELKDMIMEGAGL 464
+KL + + + Q F+ + Y+ EL + + L
Sbjct: 67 SATKLALHRAYLSQQQTPPFATPVW----------HYLTLHQHDKTRTELLNDVAGALAL 116
Query: 465 NMTVYEGGTNFSVGQRQLICLARAIV-------RNNVILVLDEATANVDPKTDLLIQRTI 517
+ + S G+ Q + LA ++ +L+LDE ++D + + +
Sbjct: 117 DDKLGRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKIL 176
Query: 518 RKKFAD--CTVLTIAHRL-HTIMDSDKVLVMDSGVAV 551
+ ++ +H L HT+ + + ++ G +
Sbjct: 177 S-ALSQQGLAIVMSSHDLNHTLRHAHRAWLLKGGKML 212
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative
iron chelatin ABC transporter, nucleotide binding
domain; 2.40A {Haemophilus influenzae}
Length = 253
Score = 82.2 bits (204), Expect = 1e-17
Identities = 46/229 (20%), Positives = 91/229 (39%), Gaps = 47/229 (20%)
Query: 341 IEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAE-VEGVIKI 399
+ +N Y + + + LN ++ + + ++G+ G GKS+L+ + + ++G I++
Sbjct: 5 LSVENLGFYYQAENFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKIEV 64
Query: 400 DDIDTEDVPLSKLRSNISIIPQDP-----------VLFSGTLRKNLDPFEKYPDY--VLW 446
+I +PQ VL + N K DY +
Sbjct: 65 Y-------------QSIGFVPQFFSSPFAYSVLDIVLMGRSTHINTFAKPKSHDYQVAMQ 111
Query: 447 TALQEV---ELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATA 503
AL + L T+ S GQRQLI +ARAI +++LDE T+
Sbjct: 112 -ALDYLNLTHLAKREF-------------TSLSGGQRQLILIARAIASECKLILLDEPTS 157
Query: 504 NVDPKTDLLIQRTIRK--KFADCTVLTIAHRL-HTIMDSDKVLVMDSGV 549
+D ++ + + + TV+ H+ + ++K L+++
Sbjct: 158 ALDLANQDIVLSLLIDLAQSQNMTVVFTTHQPNQVVAIANKTLLLNKQN 206
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 84.7 bits (209), Expect = 4e-17
Identities = 97/662 (14%), Positives = 184/662 (27%), Gaps = 234/662 (35%)
Query: 12 QDTVTATREE-YRQFEILKNDTAFVEMYGRSTFFKIVNNTINQH---HHFHLLST----- 62
Q+ E F T E+ G+ F V++ + +L+
Sbjct: 34 QEQFNKILPEPTEGFAADDEPTTPAELVGK--FLGYVSSLVEPSKVGQFDQVLNLCLTEF 91
Query: 63 -ESYIG---IYFSLIVGLFVAGISRST---------AFYSACMRCSKGIHKK----MFEA 105
Y+ I+ +L L + +T + +A + + KK +F A
Sbjct: 92 ENCYLEGNDIH-ALAAKL--LQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRA 148
Query: 106 V-----------------------------VYSPL--AFFSTNPSGRILNRFSKDMGAVD 134
V Y L S L+ + +
Sbjct: 149 VGEGNAQLVAIFGGQGNTDDYFEELRDLYQTYHVLVGDLIKF--SAETLSELIRTTLDAE 206
Query: 135 EVLPKAMLDAAQGVMQVSGALIVSLSVNP--------LFSIPV---LILLYLFWRLSKAY 183
+V + L+ I+ NP L SIP+ LI + Y
Sbjct: 207 KVFTQG-LN------------ILEWLENPSNTPDKDYLLSIPISCPLIGVIQL----AHY 249
Query: 184 LRTSKSLKYLEGVTRSPVFTHLNACLHGLPTIRAHG--AAKILVEEFDYHQDLHSSTWHL 241
+ T+K L + +P L + L G T + G A + E + +W
Sbjct: 250 VVTAKLLGF------TP--GELRSYLKGA-TGHSQGLVTAVAIAE---------TDSWES 291
Query: 242 FVYTNMGFAYLIDFLCLLYLSTILISFFFFADIGGKVGLAVTQTMTLMGVVQWAMRQAAE 301
F + ++ A I+ FF +G+ + + + + E
Sbjct: 292 F-FVSVRKA---------------ITVLFF------IGVRCYEAYPNTSLPPSILEDSLE 329
Query: 302 VEN----HMISVKRLVEYTKLEPEGNLSPNYEDENEIWPVLGKIEFQNTNVRYLSGPRVI 357
M+S+ L + + N P ++E N G +
Sbjct: 330 NNEGVPSPMLSISNL-------TQEQVQDYVNKTNSHLPAGKQVEISLVN-----GAK-- 375
Query: 358 KNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAEVEGVIKIDDIDTEDVPLS--KLRSN 415
NL ++ P+ SL L + + +D +P S KL+ +
Sbjct: 376 -NLVVSGPPQ--------------SLYGLNLTLRKAKAP---SGLDQSRIPFSERKLKFS 417
Query: 416 ISIIPQDPVLFSGTLRKNLDPF-EKYPDYVLWTALQEVELKDMIMEGAGLNMTVY--EGG 472
+P + S PF +++ ++ + + VY G
Sbjct: 418 NRFLP----VAS--------PFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDG 465
Query: 473 TNFSVGQRQLICLARAIVRNNVILVLDEATANVDPK-TDLLIQRTIRKKFADCTVLTIAH 531
++ L + ++ + D +I+ ++ + T H
Sbjct: 466 SD-----------------------LRVLSGSISERIVDCIIRLPVK--WETTTQFKATH 500
Query: 532 RLHTIMDSDKVLVMDSGVAVVSSFGFFFSKDLIEGT----VSAKVLSSRKRREKEDRIGE 587
+L G S G + +GT + A L +D G
Sbjct: 501 ----------ILDFGPG--GASGLGVLTHR-NKDGTGVRVIVAGTLDIN----PDDDYGF 543
Query: 588 SQ 589
Q
Sbjct: 544 KQ 545
Score = 38.1 bits (88), Expect = 0.010
Identities = 67/426 (15%), Positives = 120/426 (28%), Gaps = 180/426 (42%)
Query: 19 REEYRQFEILKN-----DTAFVEMYGRSTFFKIV-NNTINQHHHFHLLSTESYIGIYFSL 72
+ Y+ + ++ D F + YG S IV NN +N + I+F
Sbjct: 1633 MDLYKTSKAAQDVWNRADNHFKDTYGFSIL-DIVINNPVN-------------LTIHFGG 1678
Query: 73 IVGLFVAGISRSTAFYSACMRCSKGIHKKMFEAVVYSPLAFFSTNPSGRILNRFSKDMGA 132
G K I + YS + F T G++ + K
Sbjct: 1679 EKG--------------------KRIREN------YSAMIF-ETIVDGKL--KTEKIFKE 1709
Query: 133 VDEVLPKAMLDAAQGVM------QVSGALIVSLSVNPLFSIPVLILLYLFWRLSKAYLRT 186
++E + +G++ Q P L L+ KA
Sbjct: 1710 INEHSTSYTFRSEKGLLSATQFTQ-----------------PALTLM------EKAAFED 1746
Query: 187 SKSLKYLEGVTRSP-VFTHLNACLHGLPTIRAH--G--AAKILVEEFDYHQDLHSSTWHL 241
KS +G+ + F A G H G AA L D
Sbjct: 1747 LKS----KGLIPADATF----A---G------HSLGEYAA--LASLADV----------- 1776
Query: 242 FVYTNMGFAYLIDFLCLLYLSTILISFFFFADIGGKVGLAVTQTMTLMGVVQWAMRQAAE 301
M + +++ + + D G+ ++ + + +
Sbjct: 1777 -----MSIE---SLVEVVFYRGMTMQVAVPRDELGRSNYG------MIAINPGRVAASFS 1822
Query: 302 VENHMISVKRLVEYTKLEPEGNLSP-NYEDENEIWPVLGKIEFQNTNVRYLSGPRVIKNL 360
E +++ +VE + NY EN+ Q Y V
Sbjct: 1823 QE----ALQYVVERVGKRTGWLVEIVNYNVENQ----------Q-----Y-----VA--- 1855
Query: 361 NITIHPKEKIGIVGRTGAGKSSLIAAIFRLAEVEGVIKIDDIDTEDVPLSKLRSNISIIP 420
AG + A+ + V IK+ ID + +L+ ++S+
Sbjct: 1856 -----------------AGD---LRALDTVTNVLNFIKLQKID-----IIELQKSLSLEE 1890
Query: 421 QDPVLF 426
+ LF
Sbjct: 1891 VEGHLF 1896
Score = 33.9 bits (77), Expect = 0.17
Identities = 40/228 (17%), Positives = 76/228 (33%), Gaps = 75/228 (32%)
Query: 310 KRLVE-YTKLEPEGNLSPNYEDENEIWPVLGKIEFQNTNVRYLSGPRVIKNLNITIH--P 366
KR+ E Y+ + E + + E + +I +T+ + + + L+ T P
Sbjct: 1682 KRIRENYSAMIFETIVDGKLKTE----KIFKEINEHSTSYTF-RSEKGL--LSATQFTQP 1734
Query: 367 KEKIGIVGRTGAGKSSLIA---AIFRLAEVEGVIKIDD-------------------IDT 404
A L A F + +G+I D +
Sbjct: 1735 -----------A----LTLMEKAAFEDLKSKGLIPADATFAGHSLGEYAALASLADVMSI 1779
Query: 405 ED-VPLSKLRSNI--SIIPQDPVLFSGTLRKNLDP------FEKYPDYVLWTALQEVELK 455
E V + R +P+D + S ++P F + ALQ V
Sbjct: 1780 ESLVEVVFYRGMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQ-------EALQYVV-- 1830
Query: 456 DMIMEGAGLNMTVYEGGTNFSVGQRQLICLA---RAIVRNNVILVLDE 500
+ + + G + + N++V +Q + A RA+ + V VL+
Sbjct: 1831 ERVGKRTGWLVEI----VNYNVENQQYVA-AGDLRAL--DTVTNVLNF 1871
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis,
hydrolyase/translation complex; HET: ADP; 1.90A
{Pyrococcus furiosus}
Length = 538
Score = 83.1 bits (206), Expect = 5e-17
Identities = 45/230 (19%), Positives = 83/230 (36%), Gaps = 33/230 (14%)
Query: 345 NTNVRYLSGPRVIKNLNI-TIHPKEKIGIVGRTGAGKSSLIAAI-------FRLAEVEGV 396
+ RY G + + +GIVG G GKS+ + +
Sbjct: 26 DCVHRY--GVNAFVLYRLPVVKEGMVVGIVGPNGTGKSTAVKILAGQLIPNLCGDNDSWD 83
Query: 397 IKIDDIDTEDVP--LSKLR-SNISIIPQ------DPVLFSGTLRKNLDPFEKYPDYVLWT 447
I ++ KL+ I + + P G + + L ++ L
Sbjct: 84 GVIRAFRGNELQNYFEKLKNGEIRPVVKPQYVDLIPKAVKGKVIELLKKADE--TGKLEE 141
Query: 448 ALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATANVDP 507
++ +EL+++ L + S G+ Q + +A A++RN DE ++ +D
Sbjct: 142 VVKALELENV------LEREIQH----LSGGELQRVAIAAALLRNATFYFFDEPSSYLDI 191
Query: 508 KTDLLIQRTIRK-KFADCTVLTIAHRLHTIMD-SDKVLVMDSGVAVVSSF 555
+ L R IR+ +VL + H L + SD + V+ V F
Sbjct: 192 RQRLNAARAIRRLSEEGKSVLVVEHDLAVLDYLSDIIHVVYGEPGVYGIF 241
Score = 80.0 bits (198), Expect = 5e-16
Identities = 48/228 (21%), Positives = 90/228 (39%), Gaps = 27/228 (11%)
Query: 325 SPNYEDENEIWPVLGKIEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLI 384
+ E + + + G ++ I E IGIVG G GK++ +
Sbjct: 270 EIKFTKTGERVEIERETLVTYPRLVKDYGSFRLEVEPGEIKKGEVIGIVGPNGIGKTTFV 329
Query: 385 AAIFRLAEV-EGVIKIDDIDTEDVPLSKLRSNISIIPQDPV--LFSGTLRKNLDPFEKYP 441
+ + E EG I+ D + ++ I + V L S L+
Sbjct: 330 KMLAGVEEPTEGKIEWD------LTVAYKPQYIKADYEGTVYELLSKIDASKLNSNFYKT 383
Query: 442 DYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEA 501
+ L+ + + D+ + V E S G+ Q + +A ++R+ I +LDE
Sbjct: 384 E-----LLKPLGIIDL------YDREVNE----LSGGELQRVAIAATLLRDADIYLLDEP 428
Query: 502 TANVDPKTDLLIQRTIRK--KFADCTVLTIAHRLHTIMD-SDKVLVMD 546
+A +D + L + R IR + + T L + H + I SD+++V +
Sbjct: 429 SAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRLMVFE 476
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase,
translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Length = 538
Score = 83.2 bits (206), Expect = 6e-17
Identities = 34/229 (14%), Positives = 82/229 (35%), Gaps = 46/229 (20%)
Query: 349 RYLSGPRVIKNLNI-TIHPKEKIGIVGRTGAGKSSLIAAI-----FRLAEVEGVIKIDDI 402
RY K + T +G++G+ G GK++++ + + + D++
Sbjct: 8 RY--KVNGFKLFGLPTPKNNTILGVLGKNGVGKTTVLKILAGEIIPNFGDPNSKVGKDEV 65
Query: 403 DTEDVPLSKLRSN-ISIIPQDPV------------------LFSGTLRKNLDPFEKYPDY 443
L + R I ++ GT+ + L ++
Sbjct: 66 ------LKRFRGKEIYNYFKELYSNELKIVHKIQYVEYASKFLKGTVNEILTKIDE---- 115
Query: 444 VLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATA 503
EV + + M N S G Q + +A +++R + + D+ ++
Sbjct: 116 --RGKKDEV-KELLNMTNL-WNKDANI----LSGGGLQRLLVAASLLREADVYIFDQPSS 167
Query: 504 NVDPKTDLLIQRTIRKKFADCTVLTIAHRLHTIMD-SDKVLVMDSGVAV 551
+D + + + + IR+ + V+ + H L + +D + ++ +V
Sbjct: 168 YLDVRERMNMAKAIRELLKNKYVIVVDHDLIVLDYLTDLIHIIYGESSV 216
Score = 83.2 bits (206), Expect = 6e-17
Identities = 43/240 (17%), Positives = 83/240 (34%), Gaps = 27/240 (11%)
Query: 314 EYTKLEPEGNLSPNYEDENEIWPVLGKIEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIV 373
E K+ P+ E + K + + T + G + N E IGI+
Sbjct: 241 ENMKIRPDEIKFMLKEVSDLDLSKDLKTKMKWTKIIKKLGDFQLVVDNGEAKEGEIIGIL 300
Query: 374 GRTGAGKSSLIAAIFRLAEVEGVIKID--DIDTEDVPLSKLRSNISIIPQDPV--LFSGT 429
G G GK++ + G I D + E LS I V
Sbjct: 301 GPNGIGKTTFARIL------VGEITADEGSVTPEKQILSYKPQRIFPNYDGTVQQYLENA 354
Query: 430 LRKNLDPFEKYPDYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAI 489
+ L + + V + + L + L V + S G+ Q + +A +
Sbjct: 355 SKDALSTSSWFFEEVT----KRLNLHRL------LESNVND----LSGGELQKLYIAATL 400
Query: 490 VRNNVILVLDEATANVDPKTDLLIQRTIRK--KFADCTVLTIAHRLHTIMD-SDKVLVMD 546
+ + VLD+ ++ +D + ++ + I++ + I H L +D+++V
Sbjct: 401 AKEADLYVLDQPSSYLDVEERYIVAKAIKRVTRERKAVTFIIDHDLSIHDYIADRIIVFK 460
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint
center for structural genomics, JCSG, protein structu
initiative, PSI; 2.10A {Thermotoga maritima} SCOP:
c.37.1.12
Length = 256
Score = 73.3 bits (181), Expect = 9e-15
Identities = 44/219 (20%), Positives = 100/219 (45%), Gaps = 23/219 (10%)
Query: 341 IEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAE-VEGVIKI 399
+ ++ R ++K ++ I E G++G GAGK++ + I L + G++ +
Sbjct: 16 VVVKDLRKRI-GKKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTV 74
Query: 400 DDIDTEDVPLSKLRSNISIIPQDPVLFSG-TLRKNLDPFEKYPDYVLWTALQEVELKDMI 458
+ + P ++R IS +P++ + + L + Y A E+++M+
Sbjct: 75 FGKNVVEEPH-EVRKLISYLPEEAGAYRNMQGIEYLRFVAGF--Y----ASSSSEIEEMV 127
Query: 459 ---MEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATANVDPKTDLLIQR 515
E AGL + + + +S G + + +ARA++ N + +LDE T+ +D +++
Sbjct: 128 ERATEIAGLGEKIKDRVSTYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRK 187
Query: 516 TIRK-KFADCTVLTIAHRLHTIMD-----SDKVLVMDSG 548
+++ T+L +H M D++ ++ +G
Sbjct: 188 ILKQASQEGLTILVSSH----NMLEVEFLCDRIALIHNG 222
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 72.2 bits (176), Expect = 3e-13
Identities = 64/420 (15%), Positives = 127/420 (30%), Gaps = 136/420 (32%)
Query: 225 VEEFDYH-QDLHSSTWHLFVYTNMGFAYLIDFLCLLYLSTILISFFFFADIGGKVGL--A 281
E Y +D+ L V+ + A++ +F C + + S +I + A
Sbjct: 11 TGEHQYQYKDI------LSVFED---AFVDNFDCK-DVQDMPKSILSKEEIDHIIMSKDA 60
Query: 282 VTQTMTLMGVVQWAMRQAAEVENHMISVKRLVEYTKLEPEGNLSPNYEDENEIW------ 335
V+ T+ L W + E V++ VE L NY+ +
Sbjct: 61 VSGTLRLF----WTLLSKQEE-----MVQKFVE-------EVLRINYK-----FLMSPIK 99
Query: 336 -----PVLGKIEFQNTNVRYLSGPRVIKNLNITIH--------------PKEKIGIVGRT 376
P + + R + +V N++ P + + I G
Sbjct: 100 TEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVL 159
Query: 377 GAGKSSLIAAIFRLAEVE-----GV--IKIDDIDTEDVPLSKLRSNISIIPQDPVLFSGT 429
G+GK+ + + +V+ + + + + ++ + L L+
Sbjct: 160 GSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQ---------------K 204
Query: 430 LRKNLDP-FEKYPDYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARA 488
L +DP + D+ L+ ++ + R+L+
Sbjct: 205 LLYQIDPNWTSRSDHSSNIKLRIHSIQAEL---------------------RRLLKSKP- 242
Query: 489 IVRNNVILVLDEATANV-DPKTDLLIQRTIRKKFA-DCTVLTIAHRLHTIMDSDKVLVMD 546
N +LVL NV + K F C +L + R + D +
Sbjct: 243 --YENCLLVLL----NVQNAK--------AWNAFNLSCKIL-LTTRFKQVTDF--LSAAT 285
Query: 547 SGVAVVSSFGFFFSKDLIEGTVSAKVLSSRK---RREKEDR-------IGESQSFRERTS 596
+ + + D ++ + K L R RE I E S R+ +
Sbjct: 286 TTHISLDHHSMTLTPDEVKS-LLLKYLDCRPQDLPREVLTTNPRRLSIIAE--SIRDGLA 342
Score = 59.1 bits (142), Expect = 3e-09
Identities = 91/647 (14%), Positives = 186/647 (28%), Gaps = 209/647 (32%)
Query: 53 QHHHFHLLSTESYIGIYFSLIVGLFVAGISRSTAFYSACMRCSKGIHKKMFEAVVYSP-- 110
HHH H+ + I+ +F + + K+ + ++ S
Sbjct: 1 HHHHHHMDFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDA 60
Query: 111 -------LAFFSTNPSGRILNRFSKDMGAVDEVLPKA---MLDAAQGV-MQVSGALIVSL 159
+ ++ +F V+EVL ++ + Q S + +
Sbjct: 61 VSGTLRLFWTLLSKQE-EMVQKF------VEEVLRINYKFLMSPIKTEQRQPSMMTRMYI 113
Query: 160 S-VNPLFSIPVLILLYLFWRLSKAY-LRTS-KSLKYLEGVTRSPVFTHLNACLHGLPTIR 216
+ L++ + Y RL LR + L+ + V + G+
Sbjct: 114 EQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVL-----------IDGVL--- 159
Query: 217 AHGAAK-ILVEE----------FDYH-------------------QDLH----------- 235
G+ K + + D+ Q L
Sbjct: 160 --GSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRS 217
Query: 236 SSTWHLFVYTNMGFAYLIDFL-------CLLYL-----STILISFFFFADIGGKVGLAVT 283
+ ++ + + A L L CLL L + +F ++ K+ L T
Sbjct: 218 DHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAF----NLSCKI-LLTT 272
Query: 284 QTMTLMGVVQWAMRQAAEVENHMISVKRLVEYTKLEPEGNLSPNYEDENEIWPVLGKIEF 343
+ + + A H+ + T E + +L K
Sbjct: 273 RFKQVTDFLS------AATTTHISLDHHSMTLTPDEVKS--------------LLLKY-- 310
Query: 344 QNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAEVEGVIKIDDID 403
+ R PR + T +P + S+IA R D +
Sbjct: 311 --LDCRPQDLPREVL----TTNP---RRL---------SIIAESIR----------DGLA 342
Query: 404 T----EDVPLSKLRSNI--SIIPQDPVLFSGTLRKNLDPFEKYPDYV---------LWTA 448
T + V KL + I S+ +P + RK D +P +W
Sbjct: 343 TWDNWKHVNCDKLTTIIESSLNVLEPAEY----RKMFDRLSVFPPSAHIPTILLSLIWFD 398
Query: 449 LQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLD---EATANV 505
+ + ++ ++ + +S+ ++Q + + I + E +
Sbjct: 399 VIKSDVMVVVNKLH-----------KYSLVEKQ--------PKESTISIPSIYLELKVKL 439
Query: 506 DPKTDL---LIQR-TIRKKF--ADCTVLT--------IAHRLHTIMDSDKVLVMDSGVAV 551
+ + L ++ I K F D I H L I +++ + V
Sbjct: 440 ENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRM---V 496
Query: 552 VSSFGFFFSK---DLIEGTVSAKVLSSRKRREK-EDRIGESQSFRER 594
F F K D S +L++ ++ + + I ++ ER
Sbjct: 497 FLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYER 543
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein
biosynthesis, nucleotide-binding, phosphorylation, RNA-
binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces
cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Length = 986
Score = 68.5 bits (167), Expect = 3e-12
Identities = 39/249 (15%), Positives = 75/249 (30%), Gaps = 24/249 (9%)
Query: 284 QTMTLMGVVQWAMRQAAEVENHMISVKRLVEYTKLEPEGNLSPNYEDENEIWPVLGKIEF 343
++ W + + K + + + G+
Sbjct: 378 IDERIIDQQAWFTHITPYMTIFLHEKKAKDILDEFRKRAVDNIPVGPNFDDEEDEGEDLC 437
Query: 344 QNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAEVEGVIKIDDID 403
++ + + + GI G G GKS+L+ AI +V+G ++
Sbjct: 438 NCEFSLAYGAKILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIAN-GQVDGFPTQEECR 496
Query: 404 TEDVPLSKLRSNISIIPQDPVLFSGTLRKNLDPFEKYPDYVLWTALQEVELKDMIMEGAG 463
+ D D+V + + E + G
Sbjct: 497 ------------TVYVEHDIDGTHSDTSVL--------DFVFESGVGTKEAIKDKLIEFG 536
Query: 464 LNMTVYEGGT-NFSVGQRQLICLARAIVRNNVILVLDEATANVDPKTDLLIQRTIRKKFA 522
+ S G + + LARA++RN IL+LDE T ++D + +
Sbjct: 537 FTDEMIAMPISALSGGWKMKLALARAVLRNADILLLDEPTNHLDTVNVAWLVNYLNTC-- 594
Query: 523 DCTVLTIAH 531
T +TI+H
Sbjct: 595 GITSITISH 603
Score = 40.0 bits (93), Expect = 0.002
Identities = 15/61 (24%), Positives = 27/61 (44%), Gaps = 2/61 (3%)
Query: 341 IEFQNTNVRYLSGPR-VIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIF-RLAEVEGVIK 398
++ N +Y + I ++N +I ++G GAGKS+LI + L G +
Sbjct: 672 VKVTNMEFQYPGTSKPQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPTSGEVY 731
Query: 399 I 399
Sbjct: 732 T 732
Score = 33.5 bits (76), Expect = 0.23
Identities = 16/58 (27%), Positives = 29/58 (50%), Gaps = 2/58 (3%)
Query: 474 NFSVGQRQLICLARAIVRNNVILVLDEATANVDPKTDLLIQRTIRKKFADCTVLTIAH 531
S GQ+ + LA + ++VLDE T +D + + + + K+F + V+ I H
Sbjct: 901 GLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKAL-KEF-EGGVIIITH 956
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding
protein; beta-core domain; HET: ADP; 1.60A
{Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB:
1gaj_A 1g9x_A*
Length = 257
Score = 57.5 bits (140), Expect = 2e-09
Identities = 50/216 (23%), Positives = 94/216 (43%), Gaps = 25/216 (11%)
Query: 353 GPRVIKNLNITIHPKEKIGIVGRTGAGKSSL---IAAIFRLAEVEGVIKIDDIDTEDVPL 409
+ + ++I+++ + I+G G+GKS+L I + E G + ++ D +
Sbjct: 19 EFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADE--GRVYFENKDITNKEP 76
Query: 410 SKL-RSNISIIPQDPVLFSG-TLRKN-LDPFEKYPDYVLWTAL------QEVELKDM--- 457
++L I Q P T+ +N L + L + +E E+ +
Sbjct: 77 AELYHYGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFK 136
Query: 458 IMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATANVDP--KTDL--LI 513
I+E L+ S GQ +L+ + RA++ N ++V+DE A V P D+ +
Sbjct: 137 ILEFLKLSHLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHV 196
Query: 514 QRTIRKKFADCTVLTIAHRLHTIMD-SDKVLVMDSG 548
++ K T L I HRL +++ D + VM +G
Sbjct: 197 LE-LKAK--GITFLIIEHRLDIVLNYIDHLYVMFNG 229
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase,
ATP-binding cassette, ATPase, transport protein; 1.45A
{Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB:
1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Length = 353
Score = 51.5 bits (124), Expect = 3e-07
Identities = 57/288 (19%), Positives = 106/288 (36%), Gaps = 86/288 (29%)
Query: 340 KIEFQNTNVRYLSGP-RVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAEV-EGVI 397
+I +N + + G + N+NI I E+ GI+G +GAGK++ + I L G +
Sbjct: 3 RIIVKNVSKVFKKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGEL 62
Query: 398 KIDDIDTEDVPLSKLRS---NISIIPQ-----------DPVLFSGTLRKNLDPFEKYPDY 443
DD + I ++ Q + + F T K
Sbjct: 63 YFDDRLVASNGKLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNMK----------- 111
Query: 444 VLWTALQEVELKDMIMEGAG-LNMTVYE--------GGTNFSVGQRQLICLARAIVRNNV 494
+ + E++ + E A L++ G Q+Q + LARA+V++
Sbjct: 112 -----MSKEEIRKRVEEVAKILDIHHVLNHFPRELSGA------QQQRVALARALVKDPS 160
Query: 495 ILVLDEATANVDPKTDLLIQ-RT-IRKKFADCTVLTIAHRLHTIM-----D-------SD 540
+L+LDE +N+D + + R +++ + RL + D +D
Sbjct: 161 LLLLDEPFSNLDAR--MRDSARALVKE---------VQSRLGVTLLVVSHDPADIFAIAD 209
Query: 541 KVLVMDSGVAV------------VSSF--GFFFSKDLIEGTVSAKVLS 574
+V V+ G V VS + +EG V+ + +
Sbjct: 210 RVGVLVKGKLVQVGKPEDLYDNPVSIQVASLIGEINELEGKVTNEGVV 257
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET:
ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A*
2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Length = 263
Score = 49.9 bits (120), Expect = 7e-07
Identities = 48/175 (27%), Positives = 85/175 (48%), Gaps = 15/175 (8%)
Query: 341 IEFQNTNVRYLSGP-RVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAEV-EGVIK 398
I+ + G V+K +N+ I E + ++G +G+GKS+ + + L + EG I
Sbjct: 25 IDVHQLKKSF--GSLEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEII 82
Query: 399 ID--DIDTEDVPLSKLRSNISIIPQDPVLFSG-TLRKNLDPFEKYPDYVLWTALQEVELK 455
ID ++ +D L+K+R + ++ Q LF T+ N+ P V ++ E K
Sbjct: 83 IDGINLKAKDTNLNKVREEVGMVFQRFNLFPHMTVLNNI---TLAPMKVRKWPREKAEAK 139
Query: 456 DM-IMEGAGLN--MTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEATANVDP 507
M +++ GL Y + S GQ Q + +ARA+ I++ DE T+ +DP
Sbjct: 140 AMELLDKVGLKDKAHAYPD--SLSGGQAQRVAIARALAMEPKIMLFDEPTSALDP 192
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta
motif, beta sandwich, ligand binding protein; 1.90A
{Alicyclobacillus acidocaldarius}
Length = 355
Score = 50.7 bits (122), Expect = 7e-07
Identities = 48/235 (20%), Positives = 96/235 (40%), Gaps = 52/235 (22%)
Query: 341 IEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSL--IAAIFRLAEVEGVIK 398
IEF Y G R ++ ++ I E +G++G +G+GK+++ + A +G +
Sbjct: 15 IEFVGVEKIYPGGARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPT-KGDVW 73
Query: 399 IDDIDTEDVPLSKLRSNISIIPQDPVLFSGTLRKNLDPFE---------KYPDYVLWTAL 449
I D+P K R N+ ++ Q+ LF +++ ++ + P
Sbjct: 74 IGGKRVTDLPPQK-R-NVGLVFQNYALF-----QHMTVYDNVSFGLREKRVP-------- 118
Query: 450 QEVELKDMIMEGAGL-NMTVYEG--GTNFSVGQRQLICLARAIVRNNVILVLDEATANVD 506
+ E+ + E + Y S GQ+Q + LARA+ +L+ DE A +D
Sbjct: 119 -KDEMDARVRELLRFMRLESYANRFPHELSGGQQQRVALARALAPRPQVLLFDEPFAAID 177
Query: 507 PKTDLLIQRTIRKKFADCTVLTIAHRLH--TIM---D-------SDKVLVMDSGV 549
+ ++ +R+ + + ++ D +D+VLV+ G
Sbjct: 178 TQIRRELRTFVRQ---------VHDEMGVTSVFVTHDQEEALEVADRVLVLHEGN 223
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI,
protein structure initiative, midwest center for
structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga
maritima} SCOP: c.37.1.12
Length = 240
Score = 47.4 bits (114), Expect = 4e-06
Identities = 38/170 (22%), Positives = 81/170 (47%), Gaps = 23/170 (13%)
Query: 342 EFQNTNVRYLSGP-RVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAEVE-GVIKI 399
E Q+ +V Y G IK +++ + + + ++G GAGK++ ++AI L + G I
Sbjct: 8 EVQSLHVYY--GAIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIF 65
Query: 400 DDIDTEDVPLSKL-RSNISIIPQDPVLFSG-TLRKNLD--PFEKYPDYVLWTALQEV--- 452
+ D + P + R I+++P+ +F T+ +NL + + + L+ +
Sbjct: 66 NGQDITNKPAHVINRMGIALVPEGRRIFPELTVYENLMMGAYNRKDKEGIKRDLEWIFSL 125
Query: 453 --ELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDE 500
LK+ + + G S G++Q++ + RA++ +L++DE
Sbjct: 126 FPRLKERLKQLGGT----------LSGGEQQMLAIGRALMSRPKLLMMDE 165
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein;
structural genomics; 1.70A {Aquifex aeolicus} PDB:
2pcl_A
Length = 224
Score = 47.5 bits (114), Expect = 4e-06
Identities = 39/189 (20%), Positives = 77/189 (40%), Gaps = 38/189 (20%)
Query: 341 IEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRL-AEVEGVIKI 399
+ +N ++K +++++ E + I+G +G+GKS+L+ + L A EG + +
Sbjct: 5 LRAENIKKVIRGY-EILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTEGKVFL 63
Query: 400 DDIDTE---DVPLSKLRS-NISIIPQDPVLFSGTLRKNLDPFEKYPDYVLWTALQEVELK 455
+ + + + LS LR+ + + Q L P TAL+ V +
Sbjct: 64 EGKEVDYTNEKELSLLRNRKLGFVFQ---------FHYLIPEL--------TALENVIVP 106
Query: 456 DMI---------------MEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDE 500
+ + GL + S G++Q + +ARA+ ++L DE
Sbjct: 107 MLKMGKPKKEAKERGEYLLSELGLGDKLSRKPYELSGGEQQRVAIARALANEPILLFADE 166
Query: 501 ATANVDPKT 509
T N+D
Sbjct: 167 PTGNLDSAN 175
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding
protein; structural genomics, NPPSFA; 1.94A {Pyrococcus
horikoshii}
Length = 362
Score = 46.8 bits (112), Expect = 1e-05
Identities = 52/245 (21%), Positives = 99/245 (40%), Gaps = 71/245 (28%)
Query: 340 KIEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAEV-EGVIK 398
+I+ +N ++ + N+N+ I E + ++G +G+GKS+L+ I + + G I
Sbjct: 3 EIKLENIVKKF-GNFTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKIY 61
Query: 399 IDDIDTEDVPLSKLRSNISIIPQDPVL-----------FSGTLRKNLDPFEKYPDYVLWT 447
D+ D ++P K R N+ ++ Q+ L F LRK
Sbjct: 62 FDEKDVTELP-PKDR-NVGLVFQNWALYPHMTVYKNIAFPLELRK--------------- 104
Query: 448 ALQEVELKDMIMEGAG-LNMTVY--------EGGTNFSVGQRQLICLARAIVRNNVILVL 498
E+ + E A L++ GG Q+Q + +ARA+V+ +L+L
Sbjct: 105 -APREEIDKKVREVAKMLHIDKLLNRYPWQLSGG------QQQRVAIARALVKEPEVLLL 157
Query: 499 DEATANVDPKTDLLIQ-RT-IRKKFADCTVLTIAHRLHTIM-----D-------SDKVLV 544
DE +N+D L ++ R +++ + L D +D++ V
Sbjct: 158 DEPLSNLDAL--LRLEVRAELKR---------LQKELGITTVYVTHDQAEALAMADRIAV 206
Query: 545 MDSGV 549
+ G
Sbjct: 207 IREGE 211
>3tif_A Uncharacterized ABC transporter ATP-binding prote;
nucleotide-binding domain, ABC transporter ATPase; HET:
ADP; 1.80A {Methanocaldococcus jannaschii dsm
2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Length = 235
Score = 46.0 bits (110), Expect = 1e-05
Identities = 53/196 (27%), Positives = 87/196 (44%), Gaps = 44/196 (22%)
Query: 341 IEFQNTNVRYLSGP---RVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRL-AEVEGV 396
++ +N Y G +KN+N+ I E + I+G +G+GKS+++ I L EG
Sbjct: 2 VKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGE 61
Query: 397 IKIDDIDTEDVP---LSKLRSN-ISIIPQDPVLFSGTLRKNLDPFEKYPDYVLWTALQEV 452
+ ID+I T D+ L+K+R + I + Q + NL P TAL+ V
Sbjct: 62 VYIDNIKTNDLDDDELTKIRRDKIGFVFQ---------QFNLIPLL--------TALENV 104
Query: 453 ELKDMIMEGAGLNMT--------------VYEGGTNF-----SVGQRQLICLARAIVRNN 493
EL + ++ + E N S GQ+Q + +ARA+ N
Sbjct: 105 ELPLIFKYRGAMSGEERRKRALECLKMAELEERFANHKPNQLSGGQQQRVAIARALANNP 164
Query: 494 VILVLDEATANVDPKT 509
I++ D+ T +D KT
Sbjct: 165 PIILADQPTWALDSKT 180
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active
transport, sugar uptake and regulation, transport
protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3
b.40.6.3 c.37.1.12 PDB: 1vci_A*
Length = 372
Score = 46.5 bits (111), Expect = 2e-05
Identities = 57/245 (23%), Positives = 95/245 (38%), Gaps = 71/245 (28%)
Query: 340 KIEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAEV-EGVIK 398
+++ +N R+ + LN+TI E + ++G +G GK++ + I L E EG I
Sbjct: 11 EVKLENLTKRF-GNFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIY 69
Query: 399 IDDIDTEDVPLSKLRSNISIIPQDPVL-----------FSGTLRKNLDPFEKYPDYVLWT 447
D D +P K R NIS++ Q + F ++K
Sbjct: 70 FGDRDVTYLP-PKDR-NISMVFQSYAVWPHMTVYENIAFPLKIKK--------------- 112
Query: 448 ALQEVELKDMIMEGAG-LNMTVY--------EGGTNFSVGQRQLICLARAIVRNNVILVL 498
+ E+ + A L + GG QRQ + +ARAIV +L++
Sbjct: 113 -FPKDEIDKRVRWAAELLQIEELLNRYPAQLSGG------QRQRVAVARAIVVEPDVLLM 165
Query: 499 DEATANVDPKTDLLIQ-RT-IRKKFADCTVLTIAHRLHTIM-----D-------SDKVLV 544
DE +N+D K L + R I+K + +L D D++ V
Sbjct: 166 DEPLSNLDAK--LRVAMRAEIKK---------LQQKLKVTTIYVTHDQVEAMTMGDRIAV 214
Query: 545 MDSGV 549
M+ G
Sbjct: 215 MNRGQ 219
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane
protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Length = 240
Score = 44.5 bits (106), Expect = 3e-05
Identities = 52/201 (25%), Positives = 88/201 (43%), Gaps = 21/201 (10%)
Query: 359 NLNITIHP-KEKIGIVGRTGAGKSSLIAAIFRLAEV-EGVIKIDDIDTEDVPLSKLRSNI 416
LN+ ++ ++G TGAGKS + I + + G ++++ D +P + R I
Sbjct: 15 RLNVDFEMGRDYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPER-R-GI 72
Query: 417 SIIPQDPVLFSG-TLRKNLD-PFEKYPDYVLWTALQEVELKDMIMEGAGL-NMTVYEG-- 471
+PQD LF ++ +N+ VE + E A +
Sbjct: 73 GFVPQDYALFPHLSVYRNIAYGLRNVE---------RVERDRRVREMAEKLGIAHLLDRK 123
Query: 472 GTNFSVGQRQLICLARAIVRNNVILVLDEATANVDPKTDLLIQRTIRK--KFADCTVLTI 529
S G+RQ + LARA+V +L+LDE + VD KT ++ +R + D +L +
Sbjct: 124 PARLSGGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHV 183
Query: 530 AHRLHTIMD-SDKVLVMDSGV 549
H L +D+V VM +G
Sbjct: 184 THDLIEAAMLADEVAVMLNGR 204
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha
and beta proteins (A/B) TM0421, structural genomics,
NPPSFA; 2.11A {Thermotoga maritima}
Length = 359
Score = 44.9 bits (107), Expect = 5e-05
Identities = 44/245 (17%), Positives = 89/245 (36%), Gaps = 71/245 (28%)
Query: 340 KIEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAEV-EGVIK 398
I N + + + ++ + E + ++G +G GK++ + + + + G I
Sbjct: 3 SIRVVNLKKYF-GKVKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGEIY 61
Query: 399 IDDIDTEDVPLSKLRSNISIIPQDPVL-----------FSGTLRKNLDPFEKYPDYVLWT 447
DD+ D+P K R + ++ Q+ L F R+
Sbjct: 62 FDDVLVNDIP-PKYR-EVGMVFQNYALYPHMTVFENIAFPLRARR--------------- 104
Query: 448 ALQEVELKDMIMEGAG-LNMTVY--------EGGTNFSVGQRQLICLARAIVRNNVILVL 498
+ + E++ ++E A L + GG Q+Q + LARA+V+ +L+
Sbjct: 105 -ISKDEVEKRVVEIARKLLIDNLLDRKPTQLSGG------QQQRVALARALVKQPKVLLF 157
Query: 499 DEATANVDPKTDLLIQ-RT-IRKKFADCTVLTIAHRLHTIM-----D-------SDKVLV 544
DE +N+D L + R I+ + L D + ++ V
Sbjct: 158 DEPLSNLDAN--LRMIMRAEIKH---------LQQELGITSVYVTHDQAEAMTMASRIAV 206
Query: 545 MDSGV 549
+ G
Sbjct: 207 FNQGK 211
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein;
ATP-binding, nucleotide-binding, membrane,
transmembrane, transport protein; 3.00A {Methanosarcina
acetivorans} SCOP: b.40.6.3 c.37.1.12
Length = 348
Score = 44.5 bits (106), Expect = 5e-05
Identities = 50/240 (20%), Positives = 98/240 (40%), Gaps = 67/240 (27%)
Query: 341 IEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSL---IAAIFRLAEVEGVI 397
IE ++ + ++ + NL++ + E I+G TGAGK+ IA F + + G I
Sbjct: 2 IEIESLSRKW--KNFSLDNLSLKVESGEYFVILGPTGAGKTLFLELIAG-FHVPD-SGRI 57
Query: 398 KIDDIDTEDVPLSKLRSNISIIPQDPVLFS----------GTLRKNLDPFEKYPDYVLWT 447
+D D D+ K +I+ + Q+ LF G K + ++ VL
Sbjct: 58 LLDGKDVTDLSPEK-H-DIAFVYQNYSLFPHMNVKKNLEFGMRMKKIKDPKR----VLD- 110
Query: 448 ALQEVELKDMI------MEGAGLNMTVYEGGTNFSVGQRQLICLARAIVRNNVILVLDEA 501
++++++ ++ + G G++Q + LARA+V N IL+LDE
Sbjct: 111 TARDLKIEHLLDRNPLTLSG----------------GEQQRVALARALVTNPKILLLDEP 154
Query: 502 TANVDPKTDLLIQRTIRKKFADCTVLTIAHRLH--TIM---D-------SDKVLVMDSGV 549
+ +DP+T + + + + + D +D++ V+ G
Sbjct: 155 LSALDPRTQENAREMLSV---------LHKKNKLTVLHITHDQTEARIMADRIAVVMDGK 205
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer,
immunology, signaling protein; HET: GDP; 1.95A {Mus
musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A*
1tq2_A*
Length = 413
Score = 39.3 bits (91), Expect = 0.003
Identities = 12/37 (32%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
Query: 369 KIGIVGRTGAGKSSLIAAIF-RLAEVEGVIKIDDIDT 404
+ + G TG+GKSS I + E EG K ++
Sbjct: 71 NVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEV 107
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding
domain, ABC motor domain, ferric iron transport, cell
inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Length = 359
Score = 38.3 bits (90), Expect = 0.005
Identities = 40/277 (14%), Positives = 91/277 (32%), Gaps = 77/277 (27%)
Query: 341 IEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAEV-EGVIKI 399
+ + + + V+ ++++++ P E + I+G +G GK++L+ + + G I +
Sbjct: 5 LHIGHLSKSF-QNTPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEISL 63
Query: 400 D--DIDTEDVPLSKLRSNISIIPQDPVLFSGTLRKNLDPFEKYPDYVLW---TALQEVE- 453
I +++ L + + Q+ VL+ T + +
Sbjct: 64 SGKTIFSKNTNLPVRERRLGYLVQE--------------------GVLFPHLTVYRNIAY 103
Query: 454 -LKDMIMEGAGLNMTVYE-----GGTNF--------SVGQRQLICLARAIVRNNVILVLD 499
L + A + G + S GQ+Q LARA+ + +++LD
Sbjct: 104 GLGNGKGRTAQERQRIEAMLELTGISELAGRYPHELSGGQQQRAALARALAPDPELILLD 163
Query: 500 EATANVDPKTDLLIQRTIRKKFADCTVLTIAHRLH--TIM---D-------SDKVLVMDS 547
E + +D + I+ + + D +D++ VM
Sbjct: 164 EPFSALDEQLRRQIREDMIA---------ALRANGKSAVFVSHDREEALQYADRIAVMKQ 214
Query: 548 GVAV------------VSSF--GFFFSKDLIEGTVSA 570
G + F + ++A
Sbjct: 215 GRILQTASPHELYRQPADLDAALFIGEGIVFPAALNA 251
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP;
1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A*
2j3e_A*
Length = 262
Score = 37.9 bits (88), Expect = 0.006
Identities = 6/20 (30%), Positives = 13/20 (65%)
Query: 369 KIGIVGRTGAGKSSLIAAIF 388
+ ++G+ G GKSS + ++
Sbjct: 38 TVLVLGKGGVGKSSTVNSLI 57
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET:
GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Length = 270
Score = 36.5 bits (84), Expect = 0.016
Identities = 8/21 (38%), Positives = 13/21 (61%)
Query: 369 KIGIVGRTGAGKSSLIAAIFR 389
I ++G+ G GKSS + +I
Sbjct: 41 TILVMGKGGVGKSSTVNSIIG 61
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral
membrane protein, ATPase, ABC transporter, membrane
transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia
coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A*
3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Length = 381
Score = 36.8 bits (86), Expect = 0.016
Identities = 20/57 (35%), Positives = 29/57 (50%), Gaps = 7/57 (12%)
Query: 356 VIKNLNITIHPKEKIGIVGRTGAGKSSL---IAAIFRLAEV-EGVIKIDDIDTEDVP 408
V K++N+ IH E + VG +G GKS+L IA L + G + I + D P
Sbjct: 18 VSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAG---LETITSGDLFIGEKRMNDTP 71
Score = 30.6 bits (70), Expect = 1.6
Identities = 12/33 (36%), Positives = 19/33 (57%)
Query: 476 SVGQRQLICLARAIVRNNVILVLDEATANVDPK 508
S GQRQ + + R +V + +LDE +N+D
Sbjct: 135 SGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAA 167
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP;
1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Length = 262
Score = 36.4 bits (85), Expect = 0.019
Identities = 14/49 (28%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
Query: 356 VIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAEV-EGVIKIDDID 403
V+K +++ + I I+G +G+GKS+ + I L + EG I ++ +
Sbjct: 21 VLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQN 69
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport,
maltose uptake and regulation, sugar binding protein;
1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3
c.37.1.12 PDB: 2d62_A
Length = 372
Score = 36.4 bits (85), Expect = 0.021
Identities = 12/63 (19%), Positives = 28/63 (44%), Gaps = 2/63 (3%)
Query: 340 KIEFQNTNVRYLSGPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAEV-EGVIK 398
+ + + ++ +++ + E + ++G +G GK++ + I L E G I
Sbjct: 3 GVRLVDVWKVF-GEVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIY 61
Query: 399 IDD 401
I D
Sbjct: 62 IGD 64
Score = 35.3 bits (82), Expect = 0.049
Identities = 26/88 (29%), Positives = 41/88 (46%), Gaps = 25/88 (28%)
Query: 476 SVGQRQLICLARAIVRNNVILVLDEATANVDPKTDLLIQ-RT-IRKKFADCTVLTIAHRL 533
S GQRQ + L RAIVR + ++DE +N+D K L ++ R ++K + +L
Sbjct: 141 SGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAK--LRVRMRAELKK---------LQRQL 189
Query: 534 HTIM-----D-------SDKVLVMDSGV 549
D D++ VM+ GV
Sbjct: 190 GVTTIYVTHDQVEAMTMGDRIAVMNRGV 217
>1ky9_A Protease DO, DEGP, HTRA; protein quality control, serine protease,
trypsin, chaperone, PDZ, ATP-independent,
temperature-regulated, periplasm; 2.80A {Escherichia
coli} SCOP: b.36.1.4 b.47.1.1 PDB: 3ou0_A 4a8d_A 3otp_A
3mh7_A 3mh4_A 3mh5_A* 3mh6_A* 3cs0_A 2zle_A
Length = 448
Score = 36.2 bits (84), Expect = 0.026
Identities = 22/74 (29%), Positives = 35/74 (47%), Gaps = 18/74 (24%)
Query: 506 DPKTDL-LIQRTIRKKFADCTVLTIAHRLHTIMDSDKVLVMDSGVAVVSSFGFFFSKDLI 564
DP++D+ LIQ K T + +A DSD + V D VA+ + FG
Sbjct: 131 DPRSDIALIQIQNPKNL---TAIKMA-------DSDALRVGDYTVAIGNPFGL------- 173
Query: 565 EGTVSAKVLSSRKR 578
TV++ ++S+ R
Sbjct: 174 GETVTSGIVSALGR 187
>4a8c_A Periplasmic PH-dependent serine endoprotease DEGQ; chaperone,
hydrolase; 7.50A {Escherichia coli} PDB: 4a8a_A 4a8b_A
4a9g_A
Length = 436
Score = 35.7 bits (83), Expect = 0.044
Identities = 22/74 (29%), Positives = 34/74 (45%), Gaps = 18/74 (24%)
Query: 506 DPKTDL-LIQRTIRKKFADCTVLTIAHRLHTIMDSDKVLVMDSGVAVVSSFGFFFSKDLI 564
D ++D+ L+Q K T + IA DSDK+ V D VAV + FG
Sbjct: 108 DDQSDIALLQIQNPSKL---TQIAIA-------DSDKLRVGDFAVAVGNPFGL------- 150
Query: 565 EGTVSAKVLSSRKR 578
T ++ ++S+ R
Sbjct: 151 GQTATSGIVSALGR 164
>3stj_A Protease DEGQ; serine protease, PDZ domain, protease, chaperone,
DEGP, DEGQ hydrolase; 2.60A {Escherichia coli}
Length = 345
Score = 34.5 bits (80), Expect = 0.090
Identities = 24/83 (28%), Positives = 37/83 (44%), Gaps = 21/83 (25%)
Query: 500 EATANV---DPKTDL-LIQRTIRKKFADCTVLTIAHRLHTIMDSDKVLVMDSGVAVVSSF 555
E A + D ++D+ L+Q K T + IA DSDK+ V D VAV + F
Sbjct: 99 EFDAKLIGSDDQSDIALLQIQNPSKL---TQIAIA-------DSDKLRVGDFAVAVGNPF 148
Query: 556 GFFFSKDLIEGTVSAKVLSSRKR 578
G T ++ ++S+ R
Sbjct: 149 GL-------GQTATSGIVSALGR 164
>1l1j_A Heat shock protease HTRA; hydrolase, serine proteinase; 2.80A
{Thermotoga maritima} SCOP: b.47.1.1
Length = 239
Score = 33.8 bits (78), Expect = 0.10
Identities = 18/74 (24%), Positives = 32/74 (43%), Gaps = 17/74 (22%)
Query: 506 DPKTDL-LIQRTIRKKFADCTVLTIAHRLHTIMDSDKVLVMDSGVAVVSSFGFFFSKDLI 564
D + D+ +I+ I+ L DSDKV + + +A+ + GF
Sbjct: 100 DEELDIAVIK--IKASDKKFPYLEFG-------DSDKVKIGEWAIAIGNPLGF------- 143
Query: 565 EGTVSAKVLSSRKR 578
+ TV+ V+S+ R
Sbjct: 144 QHTVTVGVVSATNR 157
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI,
protein structure initiative; 1.90A {Geobacillus
stearothermophilus} SCOP: c.37.1.6
Length = 201
Score = 33.5 bits (77), Expect = 0.12
Identities = 19/165 (11%), Positives = 46/165 (27%), Gaps = 40/165 (24%)
Query: 370 IGIVGRTGAGKSSLIAAIFRLAEVEGVIKIDDIDTEDVPLSKLRSNISIIPQD---PVLF 426
+GI G + +GK++L + + L + ++ + D
Sbjct: 25 LGIDGLSRSGKTTLANQLSQT------------------LREQGISVCVFHMDDHIVERA 66
Query: 427 SGTLRKNLDPFEKYPDYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNFSVGQRQLICLA 486
N + FE Y L +L + L + Y +
Sbjct: 67 KRYHTGNEEWFEYYYLQWDVEWLTH-QLFRQLKASHQLTLPFY----DHETDTH--SKRT 119
Query: 487 RAIVRNNVILV-----LDEATAN-------VDPKTDLLIQRTIRK 519
+ +++I++ + +D ++ R +
Sbjct: 120 VYLSDSDMIMIEGVFLQRKEWRPFFDFVVYLDCPREIRFARENDQ 164
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold,
coiled-coils, ATPase, exonuclease, endonucle binding,
DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB:
3qkr_A*
Length = 203
Score = 33.4 bits (77), Expect = 0.12
Identities = 10/18 (55%), Positives = 14/18 (77%)
Query: 371 GIVGRTGAGKSSLIAAIF 388
I+G+ G+GKSSL+ AI
Sbjct: 27 LIIGQNGSGKSSLLDAIL 44
>3sti_A Protease DEGQ; serine protease, PDZ domain, chaperone, hydrolase;
2.60A {Escherichia coli}
Length = 245
Score = 33.7 bits (78), Expect = 0.14
Identities = 24/83 (28%), Positives = 37/83 (44%), Gaps = 21/83 (25%)
Query: 500 EATANV---DPKTDL-LIQRTIRKKFADCTVLTIAHRLHTIMDSDKVLVMDSGVAVVSSF 555
E A + D ++D+ L+Q K T + IA DSDK+ V D VAV + F
Sbjct: 99 EFDAKLIGSDDQSDIALLQIQNPSKL---TQIAIA-------DSDKLRVGDFAVAVGNPF 148
Query: 556 GFFFSKDLIEGTVSAKVLSSRKR 578
G T ++ ++S+ R
Sbjct: 149 GL-------GQTATSGIVSALGR 164
>1y8t_A Hypothetical protein RV0983; serine protease, structural genomics,
PSI, protein structure initiative; 2.00A {Mycobacterium
tuberculosis} SCOP: b.36.1.4 b.47.1.1 PDB: 2z9i_A
Length = 324
Score = 33.8 bits (78), Expect = 0.15
Identities = 17/83 (20%), Positives = 32/83 (38%), Gaps = 21/83 (25%)
Query: 500 EATANV---DPKTDL-LIQRTIRKKFADCTVLTIAHRLHTIMDSDKVLVMDSGVAVVSSF 555
A V DP +D+ +++ T +++ S + V +A+ S
Sbjct: 75 TAPFTVVGADPTSDIAVVRVQGVSGL---TPISLG-------SSSDLRVGQPVLAIGSPL 124
Query: 556 GFFFSKDLIEGTVSAKVLSSRKR 578
G EGTV+ ++S+ R
Sbjct: 125 GL-------EGTVTTGIVSALNR 140
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication;
1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A*
1us8_A*
Length = 149
Score = 32.4 bits (74), Expect = 0.17
Identities = 10/18 (55%), Positives = 14/18 (77%)
Query: 371 GIVGRTGAGKSSLIAAIF 388
I+G+ G+GKSSL+ AI
Sbjct: 27 LIIGQNGSGKSSLLDAIL 44
>3pv2_A DEGQ; trypsin fold, PDZ domain, chaperone protease, hydrolase;
2.15A {Legionella fallonii} PDB: 3pv3_A 3pv5_A 3pv4_A
Length = 451
Score = 33.1 bits (76), Expect = 0.24
Identities = 21/74 (28%), Positives = 35/74 (47%), Gaps = 14/74 (18%)
Query: 506 DPKTDL-LIQRTIRKKFADCTVLTIAHRLHTIMDSDKVLVMDSGVAVVSSFGFFFSKDLI 564
D +TDL +++ I K + L I DSDK+ V D VA+ + FG +
Sbjct: 122 DSETDLAVLK--IDAK--NLKSLVIG-------DSDKLEVGDFVVAIGNPFG--LNSFGN 168
Query: 565 EGTVSAKVLSSRKR 578
+ + ++S+ KR
Sbjct: 169 SQSATFGIVSALKR 182
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC
transporter ATPase domain-like; HET: DNA ADP; 2.70A
{Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Length = 371
Score = 32.9 bits (75), Expect = 0.26
Identities = 9/18 (50%), Positives = 13/18 (72%)
Query: 371 GIVGRTGAGKSSLIAAIF 388
I+G G+GKSS+ A+F
Sbjct: 29 AIIGENGSGKSSIFEAVF 46
>3tjo_A Serine protease HTRA1; peptidase, hydrolase; HET: BOG; 2.30A {Homo
sapiens} PDB: 3tjn_A 3nwu_A
Length = 231
Score = 32.7 bits (75), Expect = 0.28
Identities = 21/85 (24%), Positives = 36/85 (42%), Gaps = 18/85 (21%)
Query: 505 VDPKTDL-LIQRTIRKKFADCTVLTIAHRLHTIMDSDKVLVMDSGVAVVSSFGFFFSKDL 563
VD K D+ LI+ + K VL + S ++ + VA+ S F
Sbjct: 106 VDEKADIALIKIDHQGKL---PVLLLG-------RSSELRPGEFVVAIGSPFSL------ 149
Query: 564 IEGTVSAKVLSSRKRREKEDRIGES 588
+ TV+ ++S+ +R KE + S
Sbjct: 150 -QNTVTTGIVSTTQRGGKELGLRNS 173
>3num_A Serine protease HTRA1; DEGP, hydrolase; 2.75A {Homo sapiens} PDB:
3nzi_A 3nwu_A 2ytw_A 2joa_A
Length = 332
Score = 32.6 bits (75), Expect = 0.31
Identities = 21/85 (24%), Positives = 36/85 (42%), Gaps = 18/85 (21%)
Query: 505 VDPKTDL-LIQRTIRKKFADCTVLTIAHRLHTIMDSDKVLVMDSGVAVVSSFGFFFSKDL 563
VD K D+ LI+ + K VL + S ++ + VA+ S F
Sbjct: 89 VDEKADIALIKIDHQGKL---PVLLLG-------RSSELRPGEFVVAIGSPFSL------ 132
Query: 564 IEGTVSAKVLSSRKRREKEDRIGES 588
+ TV+ ++S+ +R KE + S
Sbjct: 133 -QNTVTTGIVSTTQRGGKELGLRNS 156
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold,
coiled-coils, ATP binding, DNA bindi MRE11, replication;
HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A*
1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Length = 339
Score = 32.7 bits (74), Expect = 0.32
Identities = 25/95 (26%), Positives = 38/95 (40%), Gaps = 16/95 (16%)
Query: 473 TNFSVGQRQLICLA------RAIVRNNVILVLDEATANVDPK-TDLLIQ--RTIRKKFAD 523
T S G+R + LA + +L+LDE T +D + LI KK
Sbjct: 247 TFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIP- 305
Query: 524 CTVLTIAHRLHTIMDSDKVLVM-----DSGVAVVS 553
V+ ++H +D V+ + S V VVS
Sbjct: 306 -QVILVSHDEELKDAADHVIRISLENGSSKVEVVS 339
Score = 32.7 bits (74), Expect = 0.35
Identities = 11/34 (32%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
Query: 355 RVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIF 388
R + + I+G+ G+GKSSL+ AI
Sbjct: 12 RSHSDTVVEFKEG-INLIIGQNGSGKSSLLDAIL 44
>1lcy_A HTRA2 serine protease; apoptosis, PDZ domain, caspase activation,
binding, hydrolase; 2.00A {Homo sapiens} SCOP: b.36.1.4
b.47.1.1
Length = 325
Score = 32.6 bits (75), Expect = 0.34
Identities = 15/85 (17%), Positives = 35/85 (41%), Gaps = 18/85 (21%)
Query: 505 VDPKTDL-LIQRTIRKKFADCTVLTIAHRLHTIMDSDKVLVMDSGVAVVSSFGFFFSKDL 563
VDP D+ ++ ++ L + S V + VA+ S F
Sbjct: 90 VDPVADIATLRIQTKEPL---PTLPLG-------RSADVRQGEFVVAMGSPFAL------ 133
Query: 564 IEGTVSAKVLSSRKRREKEDRIGES 588
+ T+++ ++SS +R ++ + ++
Sbjct: 134 -QNTITSGIVSSAQRPARDLGLPQT 157
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase;
NMR {Homo sapiens} SCOP: c.37.1.11
Length = 189
Score = 32.0 bits (72), Expect = 0.35
Identities = 12/46 (26%), Positives = 21/46 (45%), Gaps = 1/46 (2%)
Query: 369 KIGIVGRTGAGKSSLIAAIFRLAEVEGVIKIDDIDTEDVPLSKLRS 414
+ + G G GK++LI + + G + +D TE+V R
Sbjct: 3 HVFLTGPPGVGKTTLIHKASEVLKSSG-VPVDGFYTEEVRQGGRRI 47
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga
maritima} PDB: 3qg5_A 3tho_A*
Length = 365
Score = 32.5 bits (74), Expect = 0.37
Identities = 12/35 (34%), Positives = 13/35 (37%), Gaps = 4/35 (11%)
Query: 371 GIVGRTGAGKSSLIAAIFRLA---EVEGVIKIDDI 402
+ G GAGKSSL AI A D
Sbjct: 27 VVEGPNGAGKSSLFEAIS-FALFGNGIRYPNSYDY 60
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1,
nicotinic acid riboside kinase activity, NAD
biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB:
2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Length = 207
Score = 31.7 bits (72), Expect = 0.39
Identities = 13/44 (29%), Positives = 20/44 (45%), Gaps = 2/44 (4%)
Query: 370 IGIVGRTGAGKSSLIAAIFRLAEVEGVIKIDD--IDTEDVPLSK 411
IGI G T +GK++L + + VI DD ++ K
Sbjct: 24 IGISGVTNSGKTTLAKNLQKHLPNCSVISQDDFFKPESEIETDK 67
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A
{Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Length = 695
Score = 32.6 bits (73), Expect = 0.39
Identities = 5/25 (20%), Positives = 12/25 (48%)
Query: 365 HPKEKIGIVGRTGAGKSSLIAAIFR 389
++ ++G GKS+ + A+
Sbjct: 67 QGVFRLLVLGDMKRGKSTFLNALIG 91
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR,
protein transport; HET: GNP; 2.77A {Saccharomyces
cerevisiae}
Length = 307
Score = 31.5 bits (71), Expect = 0.65
Identities = 16/84 (19%), Positives = 33/84 (39%), Gaps = 4/84 (4%)
Query: 367 KEKIGIVGRTGAGKSSLIAAIFRLAEVEGVIKID---DIDTEDV-PLSKLRSNISIIPQD 422
K+ ++GR+G+GKSS+ + IF ++ D++ + L + N+
Sbjct: 3 GSKLLLMGRSGSGKSSMRSIIFSNYSAFDTRRLGATIDVEHSHLRFLGNMTLNLWDCGGQ 62
Query: 423 PVLFSGTLRKNLDPFEKYPDYVLW 446
V K D + ++
Sbjct: 63 DVFMENYFTKQKDHIFQMVQVLIH 86
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function;
HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Length = 359
Score = 31.6 bits (71), Expect = 0.71
Identities = 10/41 (24%), Positives = 18/41 (43%)
Query: 355 RVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAEVEG 395
+ +K +T + +E +V R G + IAA+ V
Sbjct: 107 QPVKYSALTSNNEECTAVVARGGTANAIRIAAVDNPVNVNK 147
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics
consortium, SGC, immune system; HET: GDP; 2.21A {Homo
sapiens} PDB: 3v70_A*
Length = 247
Score = 31.2 bits (70), Expect = 0.74
Identities = 12/31 (38%), Positives = 18/31 (58%)
Query: 358 KNLNITIHPKEKIGIVGRTGAGKSSLIAAIF 388
+NL ++ +VGRTGAGKS+ +I
Sbjct: 12 ENLYFQGESTRRLILVGRTGAGKSATGNSIL 42
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding
protein; 2.30A {Archaeoglobus fulgidus}
Length = 221
Score = 31.0 bits (71), Expect = 0.80
Identities = 9/43 (20%), Positives = 19/43 (44%), Gaps = 12/43 (27%)
Query: 370 IGIVGRTGAGKSSLIAAI-------FRLAEVEGVIKIDDIDTE 405
+ I+G G+GK+ LI ++ + G D+ ++
Sbjct: 33 VNIMGAIGSGKTLLIERTIERIGNEVKIGAMLG-----DVVSK 70
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation,
GTP-binding domain, maturation enzyme, oxidoreductase;
2.99A {Thermotoga neapolitana}
Length = 423
Score = 31.5 bits (72), Expect = 0.80
Identities = 11/54 (20%), Positives = 20/54 (37%), Gaps = 19/54 (35%)
Query: 370 IGIVGRTGAGKSSLIAAIF--RLAEV-----------EGVIKIDD------IDT 404
I + GR GKSS + A+ ++ V +++ +DT
Sbjct: 37 IVVAGRRNVGKSSFMNALVGQNVSIVSDYAGTTTDPVYKSMELHPIGPVTLVDT 90
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and
beta protein; HET: GSP; 1.90A {Methanocaldococcus
jannaschii} PDB: 2hf8_A*
Length = 226
Score = 31.1 bits (71), Expect = 0.84
Identities = 9/43 (20%), Positives = 19/43 (44%), Gaps = 12/43 (27%)
Query: 370 IGIVGRTGAGKSSLIAAI-------FRLAEVEGVIKIDDIDTE 405
+G G+GK+ LI + +++A + G D+ +
Sbjct: 41 FDFMGAIGSGKTLLIEKLIDNLKDKYKIACIAG-----DVIAK 78
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET:
MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10
PDB: 2qm7_A*
Length = 337
Score = 31.3 bits (71), Expect = 0.87
Identities = 12/35 (34%), Positives = 16/35 (45%), Gaps = 4/35 (11%)
Query: 370 IGIVGRTGAGKSSLIAA-IFRLAEVE---GVIKID 400
+GI G G GKS+ I A L V+ +D
Sbjct: 58 VGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVD 92
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC,
coiled coil, GTP- binding, nucleotide-binding, immune
system; HET: GDP; 2.15A {Homo sapiens}
Length = 239
Score = 30.7 bits (69), Expect = 0.98
Identities = 10/24 (41%), Positives = 17/24 (70%)
Query: 365 HPKEKIGIVGRTGAGKSSLIAAIF 388
+ + +I +VG+TGAGKS+ +I
Sbjct: 27 NSQLRIVLVGKTGAGKSATGNSIL 50
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein
structure initiative, NEW YORK SGX research for
structural genomics; 1.80A {Escherichia coli} SCOP:
c.37.1.10
Length = 341
Score = 30.9 bits (70), Expect = 1.1
Identities = 12/35 (34%), Positives = 17/35 (48%), Gaps = 4/35 (11%)
Query: 370 IGIVGRTGAGKSSLIAA-IFRLAEVE---GVIKID 400
+G+ G GAGKS+ + A L VI +D
Sbjct: 59 LGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVD 93
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC,
mitosis, GDP, C cycle, cell division, GTP-binding,
nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB:
2qa5_A* 3ftq_A*
Length = 301
Score = 30.9 bits (69), Expect = 1.1
Identities = 9/20 (45%), Positives = 15/20 (75%)
Query: 370 IGIVGRTGAGKSSLIAAIFR 389
+ +VG +G GKS+LI ++F
Sbjct: 21 LMVVGESGLGKSTLINSLFL 40
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural
genomics/proteomics initiative, RSGI, structural
genomics, binding; 1.70A {Thermus thermophilus} PDB:
2d2f_A*
Length = 250
Score = 30.6 bits (70), Expect = 1.2
Identities = 10/32 (31%), Positives = 19/32 (59%)
Query: 356 VIKNLNITIHPKEKIGIVGRTGAGKSSLIAAI 387
++K +N+ + E ++G GAGKS+L +
Sbjct: 18 ILKGVNLVVPKGEVHALMGPNGAGKSTLGKIL 49
>3pmk_N Phosphoprotein; chaperone, viral protein; 3.03A {Recombinant
vesicular stomatitis indiarvsv-g}
Length = 68
Score = 28.2 bits (62), Expect = 1.2
Identities = 13/46 (28%), Positives = 26/46 (56%), Gaps = 2/46 (4%)
Query: 13 DTVTATREEYRQFEILKNDTAFVEMYGRSTFFKIVNNTINQHHHFH 58
D + A R E +E+ + D VE + + ++F+ ++++ HHH H
Sbjct: 25 DEIEAQRAEKSNYELFQEDG--VEEHTKPSYFQAADDSLEHHHHHH 68
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle
structural genomics center for infectious disease,
ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium
tuberculosis} PDB: 3md0_A* 3nxs_A* 3tk1_A*
Length = 355
Score = 30.6 bits (69), Expect = 1.3
Identities = 13/35 (37%), Positives = 17/35 (48%), Gaps = 4/35 (11%)
Query: 370 IGIVGRTGAGKSSLIAA-IFRLAEVE---GVIKID 400
+GI G G GKS+ I A L E V+ +D
Sbjct: 82 VGITGVPGVGKSTAIEALGMHLIERGHRVAVLAVD 116
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster,
ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding;
HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Length = 267
Score = 30.6 bits (70), Expect = 1.3
Identities = 12/32 (37%), Positives = 22/32 (68%)
Query: 356 VIKNLNITIHPKEKIGIVGRTGAGKSSLIAAI 387
+++ L++ +HP E I+G G+GKS+L A +
Sbjct: 35 ILRGLSLDVHPGEVHAIMGPNGSGKSTLSATL 66
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport
protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo
sapiens}
Length = 349
Score = 30.6 bits (69), Expect = 1.4
Identities = 12/35 (34%), Positives = 17/35 (48%), Gaps = 4/35 (11%)
Query: 370 IGIVGRTGAGKSSLIAA-IFRLAEVE---GVIKID 400
+G+ G GAGKS+ I L E V+ +D
Sbjct: 77 VGLSGPPGAGKSTFIEYFGKMLTERGHKLSVLAVD 111
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein;
HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Length = 274
Score = 30.1 bits (67), Expect = 1.8
Identities = 9/20 (45%), Positives = 15/20 (75%)
Query: 370 IGIVGRTGAGKSSLIAAIFR 389
+ +VG +G GKS+LI ++F
Sbjct: 11 LMVVGESGLGKSTLINSLFL 30
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE;
1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Length = 260
Score = 30.0 bits (67), Expect = 1.8
Identities = 10/25 (40%), Positives = 16/25 (64%)
Query: 365 HPKEKIGIVGRTGAGKSSLIAAIFR 389
+ +I +VG+TG GKS+ +I R
Sbjct: 20 RSELRIILVGKTGTGKSAAGNSILR 44
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET:
GDP; 2.50A {Bacillus subtilis}
Length = 436
Score = 30.1 bits (69), Expect = 1.9
Identities = 8/19 (42%), Positives = 13/19 (68%)
Query: 369 KIGIVGRTGAGKSSLIAAI 387
+ ++GR GKSSL+ A+
Sbjct: 177 QFCLIGRPNVGKSSLVNAM 195
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem
G-domains, ligand binding protein; HET: GDP; 1.90A
{Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Length = 439
Score = 30.2 bits (69), Expect = 2.0
Identities = 11/19 (57%), Positives = 13/19 (68%)
Query: 369 KIGIVGRTGAGKSSLIAAI 387
K+ IVGR GKS+L AI
Sbjct: 182 KVAIVGRPNVGKSTLFNAI 200
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter
sphaeroides} SCOP: c.37.1.6
Length = 290
Score = 29.6 bits (66), Expect = 2.5
Identities = 9/27 (33%), Positives = 15/27 (55%)
Query: 370 IGIVGRTGAGKSSLIAAIFRLAEVEGV 396
I + G +GAG S++ ++ EGV
Sbjct: 8 ISVTGSSGAGTSTVKHTFDQIFRREGV 34
>4afh_A ACHBP; acetylcholine-binding protein, nicotinic receptor, ION
chann; HET: NAG BMA MAN L0B; 1.88A {Capitella teleta}
PDB: 4afg_A*
Length = 230
Score = 29.5 bits (66), Expect = 2.6
Identities = 9/70 (12%), Positives = 22/70 (31%), Gaps = 10/70 (14%)
Query: 22 YRQFEI---LKNDTAFVEMYGRSTFFKIVNNTINQHHHFHLLSTESYIGIYFSLIVGLFV 78
Y E+ +D A V + +I+ N+ + + +Y+ + + L
Sbjct: 155 YSVDEVDIHFMDDKAEVLLDFYQDSLEILENSAQRQEVVYPCCESAYVEMKYLLA----- 209
Query: 79 AGISRSTAFY 88
+
Sbjct: 210 --LRSENGNS 217
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR; fatty
acid synthase, acyl-carrier-protein, beta-ketoacyl RED
beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces
cerevisiae}
Length = 1688
Score = 29.8 bits (67), Expect = 3.1
Identities = 6/48 (12%), Positives = 15/48 (31%), Gaps = 9/48 (18%)
Query: 549 VAVVSSFGF--------FFSKDLIEGTVSAKVLSS-RKRREKEDRIGE 587
++SFGF D + G ++ + + ++
Sbjct: 1439 AVSITSFGFGQKGGQAIVVHPDYLYGAITEDRYNEYVAKVSAREKSAY 1486
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair,
nucleotide excision repai hydrolase-DNA complex; HET:
DNA; 2.90A {Thermotoga maritima}
Length = 916
Score = 29.7 bits (68), Expect = 3.5
Identities = 13/27 (48%), Positives = 19/27 (70%), Gaps = 2/27 (7%)
Query: 358 KNLNITIHPKEK-IGIVGRTGAGKSSL 383
KN+ + I PK + + I G +G+GKSSL
Sbjct: 15 KNITVRI-PKNRLVVITGVSGSGKSSL 40
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium,
SGC, cytoplasm, nucleotide-binding, nucleus,
phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB:
2q3f_A*
Length = 196
Score = 28.8 bits (64), Expect = 3.7
Identities = 8/22 (36%), Positives = 14/22 (63%)
Query: 367 KEKIGIVGRTGAGKSSLIAAIF 388
K +I ++G +GKSS+ +F
Sbjct: 20 KPRILLMGLRRSGKSSIQKVVF 41
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB);
structural genomics, PSI, protein structure initiative;
2.10A {Archaeoglobus fulgidus}
Length = 171
Score = 28.5 bits (63), Expect = 3.8
Identities = 10/43 (23%), Positives = 20/43 (46%), Gaps = 4/43 (9%)
Query: 370 IGIVGRTGAGKSSLIAAIFRLAEVEG----VIKIDDIDTEDVP 408
+ IVG + +GK++LI + + G V+K ++
Sbjct: 5 LSIVGTSDSGKTTLITRMMPILRERGLRVAVVKRHAHGDFEID 47
>1wxq_A GTP-binding protein; structural genomics, riken structural
genomics/proteomics initiative, RSGI, NPPSFA; 2.60A
{Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Length = 397
Score = 29.2 bits (66), Expect = 4.2
Identities = 8/19 (42%), Positives = 13/19 (68%)
Query: 369 KIGIVGRTGAGKSSLIAAI 387
+IG+VG+ GKS+ +A
Sbjct: 2 EIGVVGKPNVGKSTFFSAA 20
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural
genomics consortium, SGC, alternative splicing, ANK
repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens}
Length = 184
Score = 28.7 bits (65), Expect = 4.2
Identities = 11/24 (45%), Positives = 15/24 (62%), Gaps = 1/24 (4%)
Query: 361 NITIHPKE-KIGIVGRTGAGKSSL 383
N+ E K+GIVG +GKS+L
Sbjct: 13 NLYFQGPELKVGIVGNLSSGKSAL 36
>2c61_A A-type ATP synthase non-catalytic subunit B; hydrolase, H+ ATPase,
A1AO, ATP synthesis, hydrogen ION transport, ION
transport; 1.5A {Methanosarcina mazei GO1} PDB: 3dsr_A*
3b2q_A* 2rkw_A* 3eiu_A*
Length = 469
Score = 28.9 bits (65), Expect = 5.6
Identities = 12/50 (24%), Positives = 19/50 (38%), Gaps = 1/50 (2%)
Query: 353 GPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAEVEGVIKIDDI 402
G I N T+ +K+ I +G + + I R A V G +
Sbjct: 139 GISTIDGTN-TLVRGQKLPIFSASGLPHNEIALQIARQASVPGSESAFAV 187
>3i1m_C 30S ribosomal protein S3; ribosome structure, protein-RNA complex,
ribonucleoprotein, ribosomal protein, RNA-binding,
rRNA-binding, antibiotic resistance; 3.19A {Escherichia
coli k-12} PDB: 1vs7_C* 3e1a_O 3e1c_O 1vs5_C 3i1o_C
3i1q_C 3i1s_C 3i1z_C 3i21_C 3izv_G* 3izw_G* 3kc4_C
3or9_C 3ora_C 3sfs_C* 3uoq_C* 2qal_C* 1p6g_C 1p87_C
2aw7_C ...
Length = 233
Score = 28.3 bits (64), Expect = 6.5
Identities = 15/49 (30%), Positives = 24/49 (48%), Gaps = 2/49 (4%)
Query: 355 RVIKNLNITIHPKEKIGIV-GRTGAGKSSLIAAIFRLAEVEGVIKIDDI 402
R K++ +TIH + GIV G+ G L + +A V I I ++
Sbjct: 59 RPAKSIRVTIHTA-RPGIVIGKKGEDVEKLRKVVADIAGVPAQINIAEV 106
>2vqe_C 30S ribosomal protein S3; tRNA-binding, rRNA-binding,
metal-binding, zinc-finger, translation; HET: TM2 PAR;
2.5A {Thermus thermophilus} PDB: 1gix_F* 1hnw_C* 1hnx_C*
1hnz_C* 1hr0_C 1ibk_C* 1ibl_C* 1ibm_C 1j5e_C 1jgo_F*
1jgp_F* 1jgq_F* 1ml5_F* 1n32_C* 1n33_C* 1n34_C 1n36_C
1xmo_C* 1xmq_C* 1xnq_C* ...
Length = 239
Score = 28.4 bits (64), Expect = 6.9
Identities = 12/49 (24%), Positives = 22/49 (44%), Gaps = 2/49 (4%)
Query: 355 RVIKNLNITIHPKEKIGIV-GRTGAGKSSLIAAIFRLAEVEGVIKIDDI 402
R N+ +T+H K G+V GR G L + +L + + ++
Sbjct: 59 RAADNVAVTVH-VAKPGVVIGRGGERIRVLREELAKLTGKNVALNVQEV 106
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria,
structural genomics, structural genomics consortium,
SGC, unknown function; HET: GDP; 2.01A {Plasmodium
falciparum}
Length = 228
Score = 28.2 bits (63), Expect = 6.9
Identities = 13/42 (30%), Positives = 21/42 (50%), Gaps = 3/42 (7%)
Query: 354 PRVIKNLNITIHPKEK-IGIVGRTGAGKSSLIAAIFRLAEVE 394
+ L +I+P +K I + G GKSS + + R A V+
Sbjct: 16 NLYFQGL-PSINPHKKTIILSGAPNVGKSSFMNIVSR-ANVD 55
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system
kinase, STRU genomics, joint center for structural
genomics, JCSG; 1.95A {Silicibacter SP}
Length = 208
Score = 28.1 bits (63), Expect = 7.3
Identities = 11/51 (21%), Positives = 24/51 (47%), Gaps = 4/51 (7%)
Query: 355 RVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAEVEG----VIKIDD 401
V++ L+ ++ + + G G+GKS+L + +G V+ +D
Sbjct: 10 GVLERLDPRQPGRQLVALSGAPGSGKSTLSNPLAAALSAQGLPAEVVPMDG 60
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer,
alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A
{Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A*
2gja_A* 1rfl_A
Length = 172
Score = 27.9 bits (63), Expect = 7.3
Identities = 10/15 (66%), Positives = 11/15 (73%)
Query: 369 KIGIVGRTGAGKSSL 383
K+ I GR AGKSSL
Sbjct: 6 KVVIAGRPNAGKSSL 20
>3thd_A Beta-galactosidase; TIM-barrel domain, glycosyl hydrolase,
glycosylation, hydrolase; HET: NAG DGJ; 1.79A {Homo
sapiens} PDB: 3thc_A*
Length = 654
Score = 28.2 bits (62), Expect = 8.2
Identities = 12/35 (34%), Positives = 19/35 (54%)
Query: 441 PDYVLWTALQEVELKDMIMEGAGLNMTVYEGGTNF 475
P + T L D++ GA +N+ ++ GGTNF
Sbjct: 257 PHSTIKTEAVASSLYDILARGASVNLYMFIGGTNF 291
>3sq6_A ACHBP, neuronal acetylcholine receptor subunit alpha-7,
acetylcholine-binding protein; nicotinic receptor; HET:
EPJ NAG; 2.80A {Homo sapiens} PDB: 3sq9_A*
Length = 204
Score = 27.9 bits (62), Expect = 8.4
Identities = 11/53 (20%), Positives = 23/53 (43%), Gaps = 1/53 (1%)
Query: 22 YRQFEI-LKNDTAFVEMYGRSTFFKIVNNTINQHHHFHLLSTESYIGIYFSLI 73
+ E+ L+ A + Y + F++V T + F+ E Y + F++
Sbjct: 147 HHSRELDLQMQEADISGYIPYSRFELVGVTQKRSERFYECCKEPYPDVTFTVT 199
>1xjc_A MOBB protein homolog; structural genomics, midwest center for
structural GEN PSI, protein structure initiative, MCSG;
2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Length = 169
Score = 27.7 bits (61), Expect = 8.5
Identities = 8/27 (29%), Positives = 13/27 (48%)
Query: 370 IGIVGRTGAGKSSLIAAIFRLAEVEGV 396
+VG +GK++L+ A EG
Sbjct: 7 WQVVGYKHSGKTTLMEKWVAAAVREGW 33
>3r8n_C 30S ribosomal protein S3; protein biosynthesis, RNA, tRNA, transfer
RNA, 16S ribosomal subunit, RRF; 3.00A {Escherichia
coli} PDB: 2gyb_C 2gy9_C* 2ykr_C 3fih_C* 2wwl_C 3oar_C
3oaq_C 3ofb_C 3ofa_C 3ofp_C 3ofx_C 3ofy_C 3ofo_C 3r8o_C
4a2i_C
Length = 206
Score = 27.9 bits (63), Expect = 8.5
Identities = 15/49 (30%), Positives = 24/49 (48%), Gaps = 2/49 (4%)
Query: 355 RVIKNLNITIHPKEKIGIV-GRTGAGKSSLIAAIFRLAEVEGVIKIDDI 402
R K++ +TIH + GIV G+ G L + +A V I I ++
Sbjct: 58 RPAKSIRVTIHTA-RPGIVIGKKGEDVEKLRKVVADIAGVPAQINIAEV 105
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Length = 347
Score = 28.0 bits (63), Expect = 9.1
Identities = 15/45 (33%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Query: 353 GPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAEVEGVI 397
G R I L +T ++IGI +G GKS+L+ I A + ++
Sbjct: 58 GVRAIDGL-LTCGIGQRIGIFAGSGVGKSTLLGMICNGASADIIV 101
>3gqb_B V-type ATP synthase beta chain; A3B3, V-ATPase, ATP synthesis,
ATP-binding, hydrogen ION TRA hydrolase, ION transport;
2.80A {Thermus thermophilus HB8} PDB: 3a5c_D* 3a5d_D
3j0j_D*
Length = 464
Score = 28.1 bits (63), Expect = 9.1
Identities = 13/54 (24%), Positives = 22/54 (40%), Gaps = 1/54 (1%)
Query: 353 GPRVIKNLNITIHPKEKIGIVGRTGAGKSSLIAAIFRLAEVEGVIKIDDIDTED 406
G I +N T+ +K+ I +G + + A I R A V + + E
Sbjct: 134 GISTIDVMN-TLVRGQKLPIFSGSGLPANEIAAQIARQATVRPDLSGEGEKEEP 186
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural
genomics/proteomics initiative, RSGI, structural
genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1
c.37.1.8 d.242.1.1
Length = 416
Score = 27.9 bits (63), Expect = 9.5
Identities = 11/18 (61%), Positives = 15/18 (83%)
Query: 370 IGIVGRTGAGKSSLIAAI 387
+G+VG AGKSSL+AA+
Sbjct: 160 VGLVGYPNAGKSSLLAAM 177
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed
alpha-beta fold, elongated beta-sheet, walker A motif,
P-loop structural motif; 1.90A {Escherichia coli} SCOP:
c.37.1.10 PDB: 1p9n_A
Length = 174
Score = 27.5 bits (60), Expect = 9.5
Identities = 5/27 (18%), Positives = 12/27 (44%)
Query: 370 IGIVGRTGAGKSSLIAAIFRLAEVEGV 396
+ +G GK++L+ + G+
Sbjct: 9 LAFAAWSGTGKTTLLKKLIPALCARGI 35
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.322 0.137 0.395
Gapped
Lambda K H
0.267 0.0625 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 9,175,489
Number of extensions: 583887
Number of successful extensions: 1755
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1675
Number of HSP's successfully gapped: 174
Length of query: 597
Length of database: 6,701,793
Length adjustment: 99
Effective length of query: 498
Effective length of database: 3,937,614
Effective search space: 1960931772
Effective search space used: 1960931772
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 60 (27.1 bits)