BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy15020
         (89 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2FFU|A Chain A, Crystal Structure Of Human Ppgalnact-2 Complexed With
          Udp And Ea2
 pdb|2FFV|A Chain A, Human Ppgalnact-2 Complexed With Manganese And Udp
 pdb|2FFV|B Chain B, Human Ppgalnact-2 Complexed With Manganese And Udp
          Length = 501

 Score = 50.1 bits (118), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 21/43 (48%), Positives = 28/43 (65%)

Query: 15 FDESAYLEKGALRPGQDPYESNKYNQAASDNTPSNRDVPDTRH 57
          F++ AY+    +R GQDPY  NK+NQ  SD    +R +PDTRH
Sbjct: 11 FNQEAYVGGTMVRSGQDPYARNKFNQVESDKLRMDRAIPDTRH 53


>pdb|2D7I|A Chain A, Crsytal Structure Of Pp-Galnac-T10 With Udp, Galnac And
           Mn2+
 pdb|2D7R|A Chain A, Crystal Structure Of Pp-galnac-t10 Complexed With
           Galnac-ser On Lectin Domain
          Length = 570

 Score = 29.3 bits (64), Expect = 0.61,   Method: Compositional matrix adjust.
 Identities = 13/31 (41%), Positives = 16/31 (51%)

Query: 33  YESNKYNQAASDNTPSNRDVPDTRHPAMIAK 63
           Y  N +N   SD    NR +PD RHP   +K
Sbjct: 75  YRENGFNIYVSDKISLNRSLPDIRHPNCNSK 105


>pdb|3K5P|A Chain A, Crystal Structure Of Amino Acid-Binding Act: D-Isomer
           Specific 2- Hydroxyacid Dehydrogenase Catalytic Domain
           From Brucella Melitensis
          Length = 416

 Score = 26.6 bits (57), Expect = 3.7,   Method: Composition-based stats.
 Identities = 15/54 (27%), Positives = 26/54 (48%)

Query: 12  VRYFDESAYLEKGALRPGQDPYESNKYNQAASDNTPSNRDVPDTRHPAMIAKVQ 65
           VRY+D S  L+ G ++P     E  K +   S + PS++        A + K++
Sbjct: 182 VRYYDTSDKLQYGNVKPAASLDELLKTSDVVSLHVPSSKSTSKLITEAKLRKMK 235


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.319    0.134    0.406 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,819,556
Number of Sequences: 62578
Number of extensions: 98977
Number of successful extensions: 134
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 130
Number of HSP's gapped (non-prelim): 4
length of query: 89
length of database: 14,973,337
effective HSP length: 56
effective length of query: 33
effective length of database: 11,468,969
effective search space: 378475977
effective search space used: 378475977
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 45 (21.9 bits)