Query psy15020
Match_columns 89
No_of_seqs 102 out of 368
Neff 4.1
Searched_HMMs 46136
Date Fri Aug 16 18:23:12 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15020.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/15020hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3738|consensus 99.2 4.2E-12 9.1E-17 105.6 2.2 66 12-77 66-131 (559)
2 KOG3736|consensus 99.0 1.1E-10 2.3E-15 98.7 1.2 61 13-74 85-146 (578)
3 KOG3737|consensus 99.0 8.5E-11 1.9E-15 98.1 -0.2 64 12-75 97-160 (603)
4 PF05015 Plasmid_killer: Plasm 31.9 34 0.00074 22.2 1.7 10 79-88 70-79 (93)
5 cd02575 PseudoU_synth_EcTruD P 18.3 28 0.00061 27.1 -0.8 25 30-54 179-206 (253)
6 COG3549 HigB Plasmid maintenan 11.0 1.3E+02 0.0029 20.6 1.0 19 70-88 61-79 (94)
7 KOG4606|consensus 10.8 82 0.0018 22.6 -0.1 14 72-85 21-34 (126)
8 PF13288 DXPR_C: DXP reductois 9.8 67 0.0014 22.1 -0.9 23 51-73 2-24 (121)
9 COG2877 KdsA 3-deoxy-D-manno-o 9.5 43 0.00093 27.0 -2.1 35 34-77 169-203 (279)
10 PF11455 DUF3018: Protein of 9.2 1.5E+02 0.0032 19.0 0.6 8 52-59 24-31 (65)
No 1
>KOG3738|consensus
Probab=99.21 E-value=4.2e-12 Score=105.58 Aligned_cols=66 Identities=35% Similarity=0.553 Sum_probs=61.4
Q ss_pred ccCCCcccccCccccCCCCCccccccchhhhhCCCCCCCCCCCCCcccccCcccChhhhhhhhhhc
Q psy15020 12 VRYFDESAYLEKGALRPGQDPYESNKYNQAASDNTPSNRDVPDTRHPAMIAKVQTALLYKKHYLQN 77 (89)
Q Consensus 12 w~~fde~~~Ls~~~~k~~e~~y~k~~FN~~vSDrIsl~R~IPDtR~~~Ck~k~Y~~~Lp~~~~~~~ 77 (89)
=++||+.+|++++..+.++++|+.|+||+..||++..+|.|||+||+.|..+.|..+||.+.-+-.
T Consensus 66 ~k~fd~~~y~~~~~~~~Ged~y~~~~fnq~esd~l~~~r~i~dtRh~qC~~~~y~~dlp~TsviIT 131 (559)
T KOG3738|consen 66 EKTFDVEAYLNGGKWHQGEDPYKANSFNQEESDKLNPTRKIPDTRHPQCRDVDYKVDLPPTSVIIT 131 (559)
T ss_pred cCCCCchhhhcCCCccCCCchhhcCccchhhhhhhCCCCccccccccccccceeecCCCCceEEEE
Confidence 358999999999999999999999999999999999999999999999999999999998765433
No 2
>KOG3736|consensus
Probab=98.99 E-value=1.1e-10 Score=98.69 Aligned_cols=61 Identities=26% Similarity=0.287 Sum_probs=51.9
Q ss_pred cCCCcccccCccccCCCCCccccccchhhhhCCCCCCCCCCCCCcccccC-cccChhhhhhhh
Q psy15020 13 RYFDESAYLEKGALRPGQDPYESNKYNQAASDNTPSNRDVPDTRHPAMIA-KVQTALLYKKHY 74 (89)
Q Consensus 13 ~~fde~~~Ls~~~~k~~e~~y~k~~FN~~vSDrIsl~R~IPDtR~~~Ck~-k~Y~~~Lp~~~~ 74 (89)
+.++. +.++..+...++.+|++++||+++||+||++|+|||+||+.|+. +.|...||++.-
T Consensus 85 ~~~g~-~~~~~~~~~~~~~~~~~~~~N~~~Sd~I~l~Rsl~D~r~~~C~~~~~~~~~Lp~~Sv 146 (578)
T KOG3736|consen 85 GGGGK-VKLPEAEEDLEDEGYEKNAFNALLSDRISLNRSLPDLRHPECKKLKYYSDKLPTTSV 146 (578)
T ss_pred cccCc-ccCCcchHHHHHHHhhcccchhhhhhcccccCCCcchhchhhhhccccccccCCCce
Confidence 44444 66767777788888999999999999999999999999999988 667788999864
No 3
>KOG3737|consensus
Probab=98.97 E-value=8.5e-11 Score=98.06 Aligned_cols=64 Identities=17% Similarity=0.020 Sum_probs=56.0
Q ss_pred ccCCCcccccCccccCCCCCccccccchhhhhCCCCCCCCCCCCCcccccCcccChhhhhhhhh
Q psy15020 12 VRYFDESAYLEKGALRPGQDPYESNKYNQAASDNTPSNRDVPDTRHPAMIAKVQTALLYKKHYL 75 (89)
Q Consensus 12 w~~fde~~~Ls~~~~k~~e~~y~k~~FN~~vSDrIsl~R~IPDtR~~~Ck~k~Y~~~Lp~~~~~ 75 (89)
.|.=++++.|+++.......+-++++||.++||.||++|+|+|+|...||...||++||++.-.
T Consensus 97 PGE~gkp~~l~pe~k~a~~AsekEfGfN~~~SDmISm~R~v~D~R~EECkhWdYpe~Lpt~SVv 160 (603)
T KOG3737|consen 97 PGEKGKPLVLGPEFKQAIQASEKEFGFNMVASDMISMDRNVNDLRQEECKHWDYPENLPTSSVV 160 (603)
T ss_pred CCcCCcccccChhHHHHHHHHHHhhCcceeehhhhhcccCccccCHhhccccCCcccCCcceEE
Confidence 3455667777777777778889999999999999999999999999999999999999998654
No 4
>PF05015 Plasmid_killer: Plasmid maintenance system killer protein; InterPro: IPR007711 Several plasmids with proteic killer gene systems have been reported. All of them encode a stable toxin and an unstable antidote. Upon loss of the plasmid, the less stable inhibitor is inactivated more rapidly than the toxin, allowing the toxin to be activated. The activation of those systems result in cell filamentation and cessation of viable cell production. It has been verified that both the stable killer and the unstable inhibitor of the systems are short polypeptides. This family corresponds to the toxin.
Probab=31.88 E-value=34 Score=22.16 Aligned_cols=10 Identities=40% Similarity=1.222 Sum_probs=7.9
Q ss_pred CCceEEeEEe
Q psy15020 79 HDRWRIIFEL 88 (89)
Q Consensus 79 ~~~~~~~~~~ 88 (89)
...|||||+.
T Consensus 70 ~~~~RliF~~ 79 (93)
T PF05015_consen 70 NGNWRLIFRF 79 (93)
T ss_pred CCCEEEEEEE
Confidence 4579999985
No 5
>cd02575 PseudoU_synth_EcTruD PseudoU_synth_EcTruD: Pseudouridine synthase, TruD family. This group consists of bacterial pseudouridine synthases similar to Escherichia coli TruD. Pseudouridine synthases catalyze the isomerization of specific uridines in an RNA molecule to pseudouridines (5-ribosyluracil, psi). E. coli TruD makes the highly phylogenetically conserved psi13 in tRNAs.
Probab=18.29 E-value=28 Score=27.07 Aligned_cols=25 Identities=20% Similarity=0.166 Sum_probs=19.7
Q ss_pred CCccccccchhhhhCCCC---CCCCCCC
Q psy15020 30 QDPYESNKYNQAASDNTP---SNRDVPD 54 (89)
Q Consensus 30 e~~y~k~~FN~~vSDrIs---l~R~IPD 54 (89)
-.+|+.+-||.++|.||. +++.++.
T Consensus 179 lsA~qS~lFN~~Ls~Ri~~~~~~~~~~G 206 (253)
T cd02575 179 LSAARSYLFNRVLSERLEQGSWNRVLDG 206 (253)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCcccCC
Confidence 457899999999999996 4566644
No 6
>COG3549 HigB Plasmid maintenance system killer protein [General function prediction only]
Probab=10.97 E-value=1.3e+02 Score=20.60 Aligned_cols=19 Identities=32% Similarity=0.690 Sum_probs=13.5
Q ss_pred hhhhhhhccCCceEEeEEe
Q psy15020 70 YKKHYLQNSHDRWRIIFEL 88 (89)
Q Consensus 70 p~~~~~~~~~~~~~~~~~~ 88 (89)
++.+|----.+.||+||..
T Consensus 61 ~~g~ySIrvN~QwrLiF~~ 79 (94)
T COG3549 61 LKGLYSIRVNQQWRLIFRW 79 (94)
T ss_pred ccCcEEEEECCEEEEEEEe
Confidence 4555655567889999964
No 7
>KOG4606|consensus
Probab=10.84 E-value=82 Score=22.60 Aligned_cols=14 Identities=43% Similarity=0.835 Sum_probs=12.0
Q ss_pred hhhhhccCCceEEe
Q psy15020 72 KHYLQNSHDRWRII 85 (89)
Q Consensus 72 ~~~~~~~~~~~~~~ 85 (89)
-+|++-|-.||||.
T Consensus 21 i~~~~Pst~RWRi~ 34 (126)
T KOG4606|consen 21 ITYMGPSTGRWRIA 34 (126)
T ss_pred hhhcCCCccchhhH
Confidence 37899999999985
No 8
>PF13288 DXPR_C: DXP reductoisomerase C-terminal domain; PDB: 3A14_A 3A06_A 3IIE_A 2Y1D_B 4AIC_A 2JD0_B 2Y1C_B 2JD1_A 2JCX_A 2Y1G_A ....
Probab=9.76 E-value=67 Score=22.11 Aligned_cols=23 Identities=26% Similarity=0.183 Sum_probs=14.9
Q ss_pred CCCCCCcccccCcccChhhhhhh
Q psy15020 51 DVPDTRHPAMIAKVQTALLYKKH 73 (89)
Q Consensus 51 ~IPDtR~~~Ck~k~Y~~~Lp~~~ 73 (89)
+.||||.+---...||+.+|...
T Consensus 2 s~PDMrlPI~yAL~~P~r~~~~~ 24 (121)
T PF13288_consen 2 SPPDMRLPIAYALSYPERLPSPV 24 (121)
T ss_dssp -SS-THHHHHHHHHTTS--TTSS
T ss_pred CCcccHHHHHHHcCCcccCCCCC
Confidence 36899988888888888876543
No 9
>COG2877 KdsA 3-deoxy-D-manno-octulosonic acid (KDO) 8-phosphate synthase [Cell envelope biogenesis, outer membrane]
Probab=9.50 E-value=43 Score=26.96 Aligned_cols=35 Identities=23% Similarity=0.303 Sum_probs=23.8
Q ss_pred ccccchhhhhCCCCCCCCCCCCCcccccCcccChhhhhhhhhhc
Q psy15020 34 ESNKYNQAASDNTPSNRDVPDTRHPAMIAKVQTALLYKKHYLQN 77 (89)
Q Consensus 34 ~k~~FN~~vSDrIsl~R~IPDtR~~~Ck~k~Y~~~Lp~~~~~~~ 77 (89)
..+|||-++||. |++|-+|.-. +|...=-+|.+|-
T Consensus 169 ~sFGYnnLV~DM----rsl~iM~~~~-----~PViFDaTHSvQ~ 203 (279)
T COG2877 169 ASFGYNNLVVDM----RSLPIMKEFG-----APVIFDATHSVQQ 203 (279)
T ss_pred CccCcchhHHHh----hhhHHHHHcC-----CCeEEecccceeC
Confidence 458999999998 6777776655 3444445555553
No 10
>PF11455 DUF3018: Protein of unknown function (DUF3018); InterPro: IPR021558 This is a bacterial family of uncharacterised proteins.
Probab=9.25 E-value=1.5e+02 Score=19.00 Aligned_cols=8 Identities=75% Similarity=1.294 Sum_probs=6.5
Q ss_pred CCCCCccc
Q psy15020 52 VPDTRHPA 59 (89)
Q Consensus 52 IPDtR~~~ 59 (89)
|||||.+.
T Consensus 24 VPDtr~p~ 31 (65)
T PF11455_consen 24 VPDTRRPE 31 (65)
T ss_pred CCCCCChH
Confidence 79999875
Done!