Query psy15020
Match_columns 89
No_of_seqs 102 out of 368
Neff 4.1
Searched_HMMs 29240
Date Fri Aug 16 18:23:31 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15020.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/15020hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ffu_A Ppgalnact-2, polypeptid 99.5 1.3E-14 4.3E-19 112.9 2.3 67 6-72 2-68 (501)
2 2d7i_A Polypeptide N-acetylgal 99.0 1.2E-10 4.2E-15 93.1 2.2 63 9-73 53-115 (570)
3 1xhb_A Polypeptide N-acetylgal 98.2 2.5E-07 8.4E-12 70.8 1.4 31 42-72 1-31 (472)
4 2a6s_A Toxin YOEB; YEFM, antit 9.3 1.4E+02 0.0049 16.8 1.5 10 79-88 61-70 (84)
5 2z86_A Chondroitin synthase; G 7.6 36 0.0012 26.4 -2.2 40 21-60 22-71 (625)
6 1szw_A TRNA pseudouridine synt 6.2 75 0.0026 24.8 -1.1 23 31-53 218-243 (379)
7 3ilw_A DNA gyrase subunit A; D 5.8 2.1E+02 0.007 23.4 1.3 12 48-59 7-18 (470)
8 3jqo_C TRAN protein; helical o 5.4 1.3E+02 0.0046 16.3 -0.0 11 43-53 14-24 (34)
9 2r4i_A Uncharacterized protein 5.4 2.2E+02 0.0077 16.3 1.0 13 75-87 105-117 (123)
10 1z8m_A Conserved hypothetical 5.3 3.1E+02 0.011 15.4 1.6 10 79-88 62-71 (88)
No 1
>2ffu_A Ppgalnact-2, polypeptide N-acetylgalactosaminyltransferase 2, protein-UDP; ppgalnact, mucin, glycosyltransferase; HET: UDP; 1.64A {Homo sapiens} PDB: 2ffv_A*
Probab=99.46 E-value=1.3e-14 Score=112.88 Aligned_cols=67 Identities=36% Similarity=0.486 Sum_probs=61.7
Q ss_pred CCCCccccCCCcccccCccccCCCCCccccccchhhhhCCCCCCCCCCCCCcccccCcccChhhhhh
Q psy15020 6 TLRPVDVRYFDESAYLEKGALRPGQDPYESNKYNQAASDNTPSNRDVPDTRHPAMIAKVQTALLYKK 72 (89)
Q Consensus 6 ~~~~~~w~~fde~~~Ls~~~~k~~e~~y~k~~FN~~vSDrIsl~R~IPDtR~~~Ck~k~Y~~~Lp~~ 72 (89)
+...++|..||+.++|++.+.+.++++|++++||+++||+|+++|+|||+|++.|+.+.|+..+|+-
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~s~~i~~~r~~~d~r~~~~~~~~~~~~~p~v 68 (501)
T 2ffu_A 2 DALKVRWPDFNQEAYVGGTMVRSGQDPYARNKFNQVESDKLRMDRAIPDTRHDQCQRKQWRVDLPAT 68 (501)
T ss_dssp ---CBCGGGSCHHHHHHTTCCCTTSCTTTTTSSCHHHHHHSCTTCCCCCCSCGGGGGCCCCSSCCCE
T ss_pred CcccCCHhhCCcccccChhhhhhhhhhHHhcCcCHHHHcccCCCCcCCCCChhHhccccCCcCCCCE
Confidence 4578899999999999999999999999999999999999999999999999999999999988863
No 2
>2d7i_A Polypeptide N-acetylgalactosaminyltransferase 10; beta trefoil, rossmann fold; HET: NAG NGA UDP; 2.50A {Homo sapiens} PDB: 2d7r_A*
Probab=98.98 E-value=1.2e-10 Score=93.08 Aligned_cols=63 Identities=24% Similarity=0.261 Sum_probs=54.3
Q ss_pred CccccCCCcccccCccccCCCCCccccccchhhhhCCCCCCCCCCCCCcccccCcccChhhhhhh
Q psy15020 9 PVDVRYFDESAYLEKGALRPGQDPYESNKYNQAASDNTPSNRDVPDTRHPAMIAKVQTALLYKKH 73 (89)
Q Consensus 9 ~~~w~~fde~~~Ls~~~~k~~e~~y~k~~FN~~vSDrIsl~R~IPDtR~~~Ck~k~Y~~~Lp~~~ 73 (89)
....|+.|.++.|+..+ +.++.|++++||+++||+|+++|++||+|++.|+.+.|++.+|+.-
T Consensus 53 ~~~~g~~g~~~~~~~~~--~~~~~~~~~~~n~~~sd~i~l~R~~~d~r~~~~~~~~~~~~~P~vS 115 (570)
T 2d7i_A 53 RVGNGEQGRPYPMTDAE--RVDQAYRENGFNIYVSDKISLNRSLPDIRHPNCNSKRYLETLPNTS 115 (570)
T ss_dssp CCSTTGGGCCCCCCTTT--TSSHHHHTTSSCHHHHHTSCTTCCCCCCSCGGGGTCCEESSCCCEE
T ss_pred CCCCCCCCCceECCHHH--HHHHHHHHcCCCHHHHhccCCCccCCCCCCccceecccCCCCCCeE
Confidence 34567888888887554 3578999999999999999999999999999999999998888643
No 3
>1xhb_A Polypeptide N-acetylgalactosaminyltransferase 1; glycosyltransferase-A (GT-A); HET: NAG BMA; 2.50A {Mus musculus} SCOP: b.42.2.1 c.68.1.17
Probab=98.24 E-value=2.5e-07 Score=70.85 Aligned_cols=31 Identities=32% Similarity=0.313 Sum_probs=22.6
Q ss_pred hhCCCCCCCCCCCCCcccccCcccChhhhhh
Q psy15020 42 ASDNTPSNRDVPDTRHPAMIAKVQTALLYKK 72 (89)
Q Consensus 42 vSDrIsl~R~IPDtR~~~Ck~k~Y~~~Lp~~ 72 (89)
+||+||++|+|||+|++.|+.+.|++.+|+-
T Consensus 1 ~s~~~~~~r~~~d~r~~~c~~~~~~~~~p~v 31 (472)
T 1xhb_A 1 ASEMIALNRSLPDVRLEGCKTKVYPDNLPTT 31 (472)
T ss_dssp -------CCCCCCCSCGGGGTCCCCSCCCCE
T ss_pred CCccccCCCCCCCCCChhhccCcCCcCCCCe
Confidence 6999999999999999999999999999864
No 4
>2a6s_A Toxin YOEB; YEFM, antitoxin, addiction modules, RNAse, inhibitor; 1.77A {Escherichia coli} SCOP: d.298.1.1 PDB: 2a6r_A 2a6q_E
Probab=9.35 E-value=1.4e+02 Score=16.79 Aligned_cols=10 Identities=10% Similarity=0.650 Sum_probs=7.7
Q ss_pred CCceEEeEEe
Q psy15020 79 HDRWRIIFEL 88 (89)
Q Consensus 79 ~~~~~~~~~~ 88 (89)
.+.|||||+.
T Consensus 61 ~~~yRiiY~i 70 (84)
T 2a6s_A 61 TEEHRLVYAV 70 (84)
T ss_dssp SSSCEEEEEE
T ss_pred CCCeEEEEEE
Confidence 4569999975
No 5
>2z86_A Chondroitin synthase; GT-A, glycosyltransferase A, fold; HET: UGA UDP; 2.40A {Escherichia coli} PDB: 2z87_A*
Probab=7.62 E-value=36 Score=26.43 Aligned_cols=40 Identities=13% Similarity=0.110 Sum_probs=25.3
Q ss_pred cCccccCCCCCcccccc----chhhhhC------CCCCCCCCCCCCcccc
Q psy15020 21 LEKGALRPGQDPYESNK----YNQAASD------NTPSNRDVPDTRHPAM 60 (89)
Q Consensus 21 Ls~~~~k~~e~~y~k~~----FN~~vSD------rIsl~R~IPDtR~~~C 60 (89)
|++.+.......|+++. .|+.+++ +.|++|..|......|
T Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~~p~~~~~~~~p~~~~ 71 (625)
T 2z86_A 22 LNEVEKNEIISKYREITAKKSERAELKEVEPIPLDWPSDLTLPPLPESTN 71 (625)
T ss_dssp CCHHHHHHHHHHHHHHTCCCCEECCCCCCCSSCTTCCTTCCCCCCCSSTT
T ss_pred ccchhHHHHHHHHHHHhhhccccccccccCCCCCCCcccCCCCCCCCCcc
Confidence 55555554455555555 7777777 7777888766666554
No 6
>1szw_A TRNA pseudouridine synthase D; novel fold, RNA modification, TRUD, structural proteomics in europe, spine, structural genomics; 2.00A {Escherichia coli} SCOP: d.265.1.4 PDB: 1si7_A 1sb7_A
Probab=6.21 E-value=75 Score=24.83 Aligned_cols=23 Identities=22% Similarity=0.250 Sum_probs=18.0
Q ss_pred CccccccchhhhhCCCCC---CCCCC
Q psy15020 31 DPYESNKYNQAASDNTPS---NRDVP 53 (89)
Q Consensus 31 ~~y~k~~FN~~vSDrIsl---~R~IP 53 (89)
.+|+.+=||.++|.||.. ++.++
T Consensus 218 ~AyQS~lfN~~lS~Ri~~~g~~~~v~ 243 (379)
T 1szw_A 218 SAARSALFNQIVAERLKKADVNQVVD 243 (379)
T ss_dssp HHHHHHHHHHHHHHHTTSSSTTCCCT
T ss_pred HHHHHHHHHHHHHHHHHhcCCCceeC
Confidence 478889999999999964 45443
No 7
>3ilw_A DNA gyrase subunit A; DNA topology, topoisomerase, antibiotic resistance, breakage-reunion domain, struct genomics; HET: DNA; 1.60A {Mycobacterium tuberculosis} SCOP: e.11.1.0 PDB: 3ifz_A*
Probab=5.82 E-value=2.1e+02 Score=23.35 Aligned_cols=12 Identities=25% Similarity=0.506 Sum_probs=9.5
Q ss_pred CCCCCCCCCccc
Q psy15020 48 SNRDVPDTRHPA 59 (89)
Q Consensus 48 l~R~IPDtR~~~ 59 (89)
+.|+|||.|+..
T Consensus 7 ~~RAlPdv~DGL 18 (470)
T 3ilw_A 7 VGRALPEVRDGL 18 (470)
T ss_dssp CTTTSCBTTTCC
T ss_pred ccccCCchhcCC
Confidence 478899988865
No 8
>3jqo_C TRAN protein; helical outer membrane TM, outer membrane protein complex, plasmid, transport protein; HET: LDA; 2.60A {Escherichia coli} PDB: 2ofq_B
Probab=5.43 E-value=1.3e+02 Score=16.32 Aligned_cols=11 Identities=36% Similarity=0.869 Sum_probs=7.5
Q ss_pred hCCCCCCCCCC
Q psy15020 43 SDNTPSNRDVP 53 (89)
Q Consensus 43 SDrIsl~R~IP 53 (89)
|.++++|-+||
T Consensus 14 ~n~VpvNKTiP 24 (34)
T 3jqo_C 14 SNTVPVNKTIP 24 (34)
T ss_dssp SSEEESCSSCC
T ss_pred ccccccccccC
Confidence 45677777776
No 9
>2r4i_A Uncharacterized protein; NTF2-like protein, structural genomics, joint center for STR genomics, JCSG; HET: MSE CIT; 1.60A {Cytophaga hutchinsonii atcc 33406} SCOP: d.17.4.15
Probab=5.37 E-value=2.2e+02 Score=16.29 Aligned_cols=13 Identities=15% Similarity=0.429 Sum_probs=9.3
Q ss_pred hhccCCceEEeEE
Q psy15020 75 LQNSHDRWRIIFE 87 (89)
Q Consensus 75 ~~~~~~~~~~~~~ 87 (89)
.+...++|+|++.
T Consensus 105 w~r~~g~W~iv~~ 117 (123)
T 2r4i_A 105 WKLFDGNWKVIAG 117 (123)
T ss_dssp EEEETTEEEEEEE
T ss_pred EEEeCCeEEEEEE
Confidence 3456789999874
No 10
>1z8m_A Conserved hypothetical protein HP0894; structural genomics, helicobac pylori, unknown function; NMR {Helicobacter pylori} SCOP: d.298.1.2
Probab=5.30 E-value=3.1e+02 Score=15.40 Aligned_cols=10 Identities=0% Similarity=0.162 Sum_probs=7.5
Q ss_pred CCceEEeEEe
Q psy15020 79 HDRWRIIFEL 88 (89)
Q Consensus 79 ~~~~~~~~~~ 88 (89)
...||||+++
T Consensus 62 ~~dyrliY~i 71 (88)
T 1z8m_A 62 KPDVLLVYLV 71 (88)
T ss_dssp STTCEEEEEE
T ss_pred CCCEEEEEEE
Confidence 3569999875
Done!