RPS-BLAST 2.2.26 [Sep-21-2011]

Database: CDD.v3.10 
           44,354 sequences; 10,937,602 total letters

Searching..................................................done

Query= psy15020
         (89 letters)



>gnl|CDD|237549 PRK13897, PRK13897, type IV secretion system component VirD4;
           Provisional.
          Length = 606

 Score = 28.6 bits (64), Expect = 0.33
 Identities = 10/41 (24%), Positives = 20/41 (48%), Gaps = 3/41 (7%)

Query: 12  VRYFDESAY---LEKGALRPGQDPYESNKYNQAASDNTPSN 49
           ++Y+++  +   L      P Q+PY+    N  AS+ T + 
Sbjct: 548 IKYYEDKFFTSRLLPPTFVPTQEPYDPRANNNEASEETETI 588


>gnl|CDD|217160 pfam02638, DUF187, Uncharacterized BCR, COG1649. 
          Length = 394

 Score = 25.3 bits (55), Expect = 5.7
 Identities = 12/45 (26%), Positives = 14/45 (31%), Gaps = 3/45 (6%)

Query: 9   PVDVRYFDESAYLEKGALRPGQDPYESNKYNQAASDNTPSNRDVP 53
            VD   FD+  Y        G DP     Y Q       SN +  
Sbjct: 194 DVDGVQFDDHFYYPY---SFGYDPITVALYRQETKQEPFSNPEDD 235


>gnl|CDD|218397 pfam05044, Prox1, Homeobox prospero-like protein (PROX1).  The
           homeobox gene Prox1 is expressed in a subpopulation of
           endothelial cells that, after budding from veins, gives
           rise to the mammalian lymphatic system. Prox1 has been
           found to be an early specific marker for the developing
           liver and pancreas in the mammalian foregut endoderm.
           This family contains an atypical homeobox domain.
          Length = 908

 Score = 25.0 bits (54), Expect = 7.2
 Identities = 12/49 (24%), Positives = 19/49 (38%), Gaps = 2/49 (4%)

Query: 32  PYESNKYNQAASDNTPSNRDVPDTRHPAMIAKVQTALLYKKHYLQNSHD 80
           P++S      +      +RD PD   P     +   LL   H+  +S D
Sbjct: 662 PFQSPHLGAPSGSPPGKDRDSPDLPRP--TTSLHPKLLSAHHHPGSSPD 708


  Database: CDD.v3.10
    Posted date:  Mar 20, 2013  7:55 AM
  Number of letters in database: 10,937,602
  Number of sequences in database:  44,354
  
Lambda     K      H
   0.319    0.134    0.406 

Gapped
Lambda     K      H
   0.267   0.0530    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 4,482,814
Number of extensions: 335343
Number of successful extensions: 217
Number of sequences better than 10.0: 1
Number of HSP's gapped: 217
Number of HSP's successfully gapped: 6
Length of query: 89
Length of database: 10,937,602
Length adjustment: 57
Effective length of query: 32
Effective length of database: 8,409,424
Effective search space: 269101568
Effective search space used: 269101568
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (24.7 bits)