RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy15020
         (89 letters)



>2ffu_A Ppgalnact-2, polypeptide N-acetylgalactosaminyltransferase 2,
          protein-UDP; ppgalnact, mucin, glycosyltransferase;
          HET: UDP; 1.64A {Homo sapiens} PDB: 2ffv_A*
          Length = 501

 Score = 58.6 bits (141), Expect = 5e-12
 Identities = 22/49 (44%), Positives = 29/49 (59%)

Query: 10 VDVRYFDESAYLEKGALRPGQDPYESNKYNQAASDNTPSNRDVPDTRHP 58
          V    F++ AY+    +R GQDPY  NK+NQ  SD    +R +PDTRH 
Sbjct: 6  VRWPDFNQEAYVGGTMVRSGQDPYARNKFNQVESDKLRMDRAIPDTRHD 54


>2d7i_A Polypeptide N-acetylgalactosaminyltransferase 10; beta trefoil,
           rossmann fold; HET: NAG NGA UDP; 2.50A {Homo sapiens}
           PDB: 2d7r_A*
          Length = 570

 Score = 35.6 bits (81), Expect = 8e-04
 Identities = 12/29 (41%), Positives = 14/29 (48%)

Query: 30  QDPYESNKYNQAASDNTPSNRDVPDTRHP 58
              Y  N +N   SD    NR +PD RHP
Sbjct: 72  DQAYRENGFNIYVSDKISLNRSLPDIRHP 100


>1xhb_A Polypeptide N-acetylgalactosaminyltransferase 1;
          glycosyltransferase-A (GT-A); HET: NAG BMA; 2.50A {Mus
          musculus} SCOP: b.42.2.1 c.68.1.17
          Length = 472

 Score = 32.8 bits (74), Expect = 0.006
 Identities = 7/17 (41%), Positives = 9/17 (52%)

Query: 42 ASDNTPSNRDVPDTRHP 58
          AS+    NR +PD R  
Sbjct: 1  ASEMIALNRSLPDVRLE 17


>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
           programmed cell death; HET: DTP; 6.90A {Drosophila
           melanogaster} PDB: 3iz8_A*
          Length = 1221

 Score = 24.4 bits (52), Expect = 7.8
 Identities = 6/19 (31%), Positives = 7/19 (36%), Gaps = 4/19 (21%)

Query: 2   KCLLTLRPV----DVRYFD 16
            CLL L  V        F+
Sbjct: 245 NCLLVLLNVQNAKAWNAFN 263


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.319    0.134    0.406 

Gapped
Lambda     K      H
   0.267   0.0503    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,345,205
Number of extensions: 60787
Number of successful extensions: 74
Number of sequences better than 10.0: 1
Number of HSP's gapped: 74
Number of HSP's successfully gapped: 6
Length of query: 89
Length of database: 6,701,793
Length adjustment: 57
Effective length of query: 32
Effective length of database: 5,110,296
Effective search space: 163529472
Effective search space used: 163529472
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.0 bits)