RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy15020
         (89 letters)



>d1ea0a3 d.153.1.1 (A:1-422) Alpha subunit of glutamate synthase,
           N-terminal domain {Azospirillum brasilense [TaxId: 192]}
          Length = 422

 Score = 24.6 bits (53), Expect = 2.4
 Identities = 8/19 (42%), Positives = 12/19 (63%)

Query: 12  VRYFDESAYLEKGALRPGQ 30
           +   DE+  +EKG L PG+
Sbjct: 371 MVKIDETQVIEKGRLGPGE 389


>d1xhba2 c.68.1.17 (A:95-422) Polypeptide
          N-acetylgalactosaminyltransferase 1, N-terminal domain
          {Mouse (Mus musculus) [TaxId: 10090]}
          Length = 328

 Score = 23.7 bits (50), Expect = 3.9
 Identities = 5/11 (45%), Positives = 6/11 (54%)

Query: 49 NRDVPDTRHPA 59
          NR +PD R   
Sbjct: 1  NRSLPDVRLEG 11


>d1ofda3 d.153.1.1 (A:1-430) Alpha subunit of glutamate synthase,
           N-terminal domain {Synechocystis sp. [TaxId: 1143]}
          Length = 430

 Score = 23.8 bits (51), Expect = 4.4
 Identities = 8/16 (50%), Positives = 9/16 (56%)

Query: 15  FDESAYLEKGALRPGQ 30
             E   +EKG L PGQ
Sbjct: 373 LPEVDIVEKGRLAPGQ 388


>d1v5va2 d.250.1.1 (A:3-312) Glycine cleavage system T protein, GcvT
           {Pyrococcus horikoshii [TaxId: 53953]}
          Length = 310

 Score = 23.0 bits (48), Expect = 8.8
 Identities = 9/41 (21%), Positives = 16/41 (39%), Gaps = 1/41 (2%)

Query: 7   LRPVDVRYFDESAYLEKGALRPGQDPYESNKYNQAASDNTP 47
           ++P  +   D +  LE G    G +  E    +    + TP
Sbjct: 241 IKPCGLGARD-TLRLEAGYTLYGNETKELQLLSTDIDEVTP 280


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.319    0.134    0.406 

Gapped
Lambda     K      H
   0.267   0.0447    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 332,077
Number of extensions: 11830
Number of successful extensions: 21
Number of sequences better than 10.0: 1
Number of HSP's gapped: 21
Number of HSP's successfully gapped: 4
Length of query: 89
Length of database: 2,407,596
Length adjustment: 53
Effective length of query: 36
Effective length of database: 1,679,906
Effective search space: 60476616
Effective search space used: 60476616
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 47 (22.6 bits)