BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy15024
(130 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2FFU|A Chain A, Crystal Structure Of Human Ppgalnact-2 Complexed With Udp
And Ea2
pdb|2FFV|A Chain A, Human Ppgalnact-2 Complexed With Manganese And Udp
pdb|2FFV|B Chain B, Human Ppgalnact-2 Complexed With Manganese And Udp
Length = 501
Score = 162 bits (411), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 69/118 (58%), Positives = 89/118 (75%)
Query: 1 MDNYKHYYYAEVPLAKTIPFGDISDRVALRERLQCKPFKWYLEHVYPELQVPSSSQITIG 60
MD YK++YYA VP A+ +P+G+I R+ LR++L CKPFKWYLE+VYPEL+VP I G
Sbjct: 319 MDEYKNFYYAAVPSARNVPYGNIQSRLELRKKLSCKPFKWYLENVYPELRVPDHQDIAFG 378
Query: 61 IIHQGAWCLDTLGNVNDGVVGLYPCHHTGGNQAWSLTKEGFIKHHDTCLTIVNEMPGT 118
+ QG CLDTLG+ DGVVG+Y CH+ GGNQ W+LTKE +KH D CLT+V+ PG+
Sbjct: 379 ALQQGTNCLDTLGHFADGVVGVYECHNAGGNQEWALTKEKSVKHMDLCLTVVDRAPGS 436
>pdb|1XHB|A Chain A, The Crystal Structure Of Udp-Galnac: Polypeptide Alpha-N-
Acetylgalactosaminyltransferase-T1
Length = 472
Score = 97.4 bits (241), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 45/113 (39%), Positives = 67/113 (59%), Gaps = 3/113 (2%)
Query: 1 MDNYKHYYYAEVPLAKTIPFGDISDRVALRERLQCKPFKWYLEHVYPELQVPSSSQITIG 60
MD +K+++Y P + +GDIS R+ LR +LQCKPF WYLE++YP+ Q+P ++G
Sbjct: 287 MDEFKNFFYIISPGVTKVDYGDISSRLGLRRKLQCKPFSWYLENIYPDSQIP-RHYFSLG 345
Query: 61 IIH--QGAWCLDTLGNVNDGVVGLYPCHHTGGNQAWSLTKEGFIKHHDTCLTI 111
I + CLD + + VG++ CH GGNQ +S T I+ D CL +
Sbjct: 346 EIRNVETNQCLDNMARKENEKVGIFNCHGMGGNQVFSYTANKEIRTDDLCLDV 398
>pdb|2D7I|A Chain A, Crsytal Structure Of Pp-Galnac-T10 With Udp, Galnac And
Mn2+
pdb|2D7R|A Chain A, Crystal Structure Of Pp-galnac-t10 Complexed With
Galnac-ser On Lectin Domain
Length = 570
Score = 48.1 bits (113), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 45/102 (44%), Gaps = 8/102 (7%)
Query: 1 MDNYKHYYYAEVPLAKTIPFGDISDRVALRERLQCKPFKWYLEHV-------YPELQVPS 53
MD Y Y Y P + + GD++ + LR L CK FKW++ + YP ++ P+
Sbjct: 365 MDEYAEYIYQRRPEYRHLSAGDVAVQKKLRSSLNCKSFKWFMTKIAWDLPKFYPPVEPPA 424
Query: 54 SSQITIGIIHQGAWCLDTLGNVNDGVVGLYPCHHTGGNQAWS 95
++ I + G C DT + L C G AW+
Sbjct: 425 AAWGEIRNVGTGL-CADTKHGALGSPLRLEGCVRGRGEAAWN 465
>pdb|1RZO|B Chain B, Agglutinin From Ricinus Communis With Galactoaza
pdb|1RZO|D Chain D, Agglutinin From Ricinus Communis With Galactoaza
Length = 262
Score = 35.8 bits (81), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 31/61 (50%), Gaps = 3/61 (4%)
Query: 59 IGIIHQGAWCLDTLGN--VNDGVVGLYPCH-HTGGNQAWSLTKEGFIKHHDTCLTIVNEM 115
+ I+ + C+D G + + L+PC +T NQ W+L K+ I+ + CLTI
Sbjct: 11 VRIVGRNGLCVDVTGEEFFDGNPIQLWPCKSNTDWNQLWTLRKDSTIRSNGKCLTISKSS 70
Query: 116 P 116
P
Sbjct: 71 P 71
Score = 28.5 bits (62), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 21/47 (44%), Gaps = 3/47 (6%)
Query: 75 VNDGVVGLYPCHHTGGNQAWSLTKEGFIK---HHDTCLTIVNEMPGT 118
N G V L C Q W+L +G I+ + D CLT + GT
Sbjct: 154 ANSGKVWLEDCTSEKAEQQWALYADGSIRPQQNRDNCLTTDANIKGT 200
>pdb|2AAI|B Chain B, Crystallographic Refinement Of Ricin To 2.5 Angstroms
pdb|3RTI|B Chain B, Crystal Structure Of Ricin Bound With Formycin
Monophosphate
pdb|3RTJ|B Chain B, Crystal Structure Of Ricin Bound With Dinucleotide Apg
Length = 262
Score = 34.3 bits (77), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 30/62 (48%), Gaps = 3/62 (4%)
Query: 59 IGIIHQGAWCLDTLGNV--NDGVVGLYPCH-HTGGNQAWSLTKEGFIKHHDTCLTIVNEM 115
+ I+ + C+D N + L+PC +T NQ W+L ++ I+ + CLT
Sbjct: 11 VRIVGRNGLCVDVRDGRFHNGNAIQLWPCKSNTDANQLWTLKRDNTIRSNGKCLTTYGYS 70
Query: 116 PG 117
PG
Sbjct: 71 PG 72
Score = 25.8 bits (55), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 13/39 (33%), Positives = 18/39 (46%), Gaps = 3/39 (7%)
Query: 75 VNDGVVGLYPCHHTGGNQAWSLTKEGFIK---HHDTCLT 110
N G V + C Q W+L +G I+ + D CLT
Sbjct: 154 ANSGQVWIEDCSSEKAEQQWALYADGSIRPQQNRDNCLT 192
>pdb|2VLC|A Chain A, Crystal Structure Of Natural Cinnamomin (Isoform Iii)
pdb|2VLC|B Chain B, Crystal Structure Of Natural Cinnamomin (Isoform Iii)
Length = 570
Score = 32.0 bits (71), Expect = 0.095, Method: Composition-based stats.
Identities = 15/40 (37%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
Query: 73 GNVNDG-VVGLYPCHHTGG-NQAWSLTKEGFIKHHDTCLT 110
G N+G + L+PC NQ W+L ++G I+ + CLT
Sbjct: 333 GKYNNGNPIQLWPCKQNSDVNQLWTLRRDGTIRSNGKCLT 372
>pdb|1XYF|A Chain A, Endo-1,4-Beta-Xylanase From Streptomyces Olivaceoviridis
pdb|1XYF|B Chain B, Endo-1,4-Beta-Xylanase From Streptomyces Olivaceoviridis
pdb|1ISV|A Chain A, Crystal Structure Of Xylanase From Streptomyces
Olivaceoviridis E-86 Complexed With Xylose
pdb|1ISV|B Chain B, Crystal Structure Of Xylanase From Streptomyces
Olivaceoviridis E-86 Complexed With Xylose
pdb|1ISW|A Chain A, Crystal Structure Of Xylanase From Streptomyces
Olivaceoviridis E-86 Complexed With Xylobiose
pdb|1ISW|B Chain B, Crystal Structure Of Xylanase From Streptomyces
Olivaceoviridis E-86 Complexed With Xylobiose
pdb|1ISX|A Chain A, Crystal Structure Of Xylanase From Streptomyces
Olivaceoviridis E-86 Complexed With Xylotriose
pdb|1ISX|B Chain B, Crystal Structure Of Xylanase From Streptomyces
Olivaceoviridis E-86 Complexed With Xylotriose
pdb|1ISY|A Chain A, Crystal Structure Of Xylanase From Streptomyces
Olivaceoviridis E-86 Complexed With Glucose
pdb|1ISY|B Chain B, Crystal Structure Of Xylanase From Streptomyces
Olivaceoviridis E-86 Complexed With Glucose
pdb|1ISZ|A Chain A, Crystal Structure Of Xylanase From Streptomyces
Olivaceoviridis E-86 Complexed With Galactose
pdb|1ISZ|B Chain B, Crystal Structure Of Xylanase From Streptomyces
Olivaceoviridis E-86 Complexed With Galactose
pdb|1IT0|A Chain A, Crystal Structure Of Xylanase From Streptomyces
Olivaceoviridis E-86 Complexed With Lactose
pdb|1IT0|B Chain B, Crystal Structure Of Xylanase From Streptomyces
Olivaceoviridis E-86 Complexed With Lactose
pdb|1V6U|A Chain A, Crystal Structure Of Xylanase From Streptomyces
Olivaceoviridis E-86 Complexed With 2(2)-Alpha-L-
Arabinofuranosyl-Xylobiose
pdb|1V6U|B Chain B, Crystal Structure Of Xylanase From Streptomyces
Olivaceoviridis E-86 Complexed With 2(2)-Alpha-L-
Arabinofuranosyl-Xylobiose
pdb|1V6V|A Chain A, Crystal Structure Of Xylanase From Streptomyces
Olivaceoviridis E-86 Complexed With 3(2)-Alpha-L-
Arabinofuranosyl-Xylotriose
pdb|1V6V|B Chain B, Crystal Structure Of Xylanase From Streptomyces
Olivaceoviridis E-86 Complexed With 3(2)-Alpha-L-
Arabinofuranosyl-Xylotriose
pdb|1V6W|A Chain A, Crystal Structure Of Xylanase From Streptomyces
Olivaceoviridis E-86 Complexed With
2(2)-4-O-Methyl-Alpha- D-Glucuronosyl-Xylobiose
pdb|1V6W|B Chain B, Crystal Structure Of Xylanase From Streptomyces
Olivaceoviridis E-86 Complexed With
2(2)-4-O-Methyl-Alpha- D-Glucuronosyl-Xylobiose
pdb|1V6X|A Chain A, Crystal Structure Of Xylanase From Streptomyces
Olivaceoviridis E-86 Complexed With
3(3)-4-O-Methyl-Alpha- D-Glucuronosyl-Xylotriose
pdb|1V6X|B Chain B, Crystal Structure Of Xylanase From Streptomyces
Olivaceoviridis E-86 Complexed With
3(3)-4-O-Methyl-Alpha- D-Glucuronosyl-Xylotriose
Length = 436
Score = 29.6 bits (65), Expect = 0.42, Method: Composition-based stats.
Identities = 21/58 (36%), Positives = 23/58 (39%), Gaps = 3/58 (5%)
Query: 65 GAWCLDTLGNVNDGVVGLYPCHHTGGNQAWSLTKEGFI--KHHDTCLTIVNEMPGTGT 120
G CLD G N V +Y C G NQ W L +G I CL V GT
Sbjct: 362 GDKCLDAAGTGNGTKVQIYSC-WGGDNQKWRLNSDGSIVGVQSGLCLDAVGGGTANGT 418
>pdb|2D1Z|A Chain A, Crystal Structure Of Catalytic-Site Mutant Xylanase From
Streptomyces Olivaceoviridis E-86
pdb|2D1Z|B Chain B, Crystal Structure Of Catalytic-Site Mutant Xylanase From
Streptomyces Olivaceoviridis E-86
pdb|2D20|A Chain A, Crystal Structure Of Michaelis Complex Of Catalytic-Site
Mutant Xylanase From Streptomyces Olivaceoviridis E-86
pdb|2D20|B Chain B, Crystal Structure Of Michaelis Complex Of Catalytic-Site
Mutant Xylanase From Streptomyces Olivaceoviridis E-86
pdb|2D22|A Chain A, Crystal Structure Of Covalent Glycosyl-Enzyme Intermediate
Of Catalytic-Site Mutant Xylanase From Streptomyces
Olivaceoviridis E-86
pdb|2D22|B Chain B, Crystal Structure Of Covalent Glycosyl-Enzyme Intermediate
Of Catalytic-Site Mutant Xylanase From Streptomyces
Olivaceoviridis E-86
pdb|2D23|A Chain A, Crystal Structure Of Ep Complex Of Catalytic-Site Mutant
Xylanase From Streptomyces Olivaceoviridis E-86
pdb|2D23|B Chain B, Crystal Structure Of Ep Complex Of Catalytic-Site Mutant
Xylanase From Streptomyces Olivaceoviridis E-86
pdb|2D24|A Chain A, Crystal Structure Of Es Complex Of Catalytic-Site Mutant
Xylanase From Streptomyces Olivaceoviridis E-86
pdb|2D24|B Chain B, Crystal Structure Of Es Complex Of Catalytic-Site Mutant
Xylanase From Streptomyces Olivaceoviridis E-86
Length = 436
Score = 29.6 bits (65), Expect = 0.44, Method: Composition-based stats.
Identities = 21/58 (36%), Positives = 23/58 (39%), Gaps = 3/58 (5%)
Query: 65 GAWCLDTLGNVNDGVVGLYPCHHTGGNQAWSLTKEGFI--KHHDTCLTIVNEMPGTGT 120
G CLD G N V +Y C G NQ W L +G I CL V GT
Sbjct: 362 GDKCLDAAGTGNGTKVQIYSC-WGGDNQKWRLNSDGSIVGVQSGLCLDAVGGGTANGT 418
>pdb|1KNM|A Chain A, Streptomyces Lividans Xylan Binding Domain Cbm13 In
Complex With Lactose
Length = 130
Score = 29.6 bits (65), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 22/55 (40%), Gaps = 3/55 (5%)
Query: 68 CLDTLGNVNDGVVGLYPCHHTGGNQAWSLTKEGFI--KHHDTCLTIVNEMPGTGT 120
CLD G N V +Y C G NQ W L +G + CL V GT
Sbjct: 59 CLDAAGTSNGSKVQIYSCWG-GDNQKWRLNSDGSVVGVQSGLCLDAVGNGTANGT 112
Score = 25.8 bits (55), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 20/38 (52%), Gaps = 2/38 (5%)
Query: 82 LYPCHHTGGNQAWSLTKEGFIK-HHDTCLTIVNEMPGT 118
L+ CH +G NQ W+ T G ++ + D CL G+
Sbjct: 33 LWDCH-SGTNQQWAATDAGELRVYGDKCLDAAGTSNGS 69
>pdb|1KNL|A Chain A, Streptomyces Lividans Xylan Binding Domain Cbm13
pdb|1MC9|A Chain A, Strepromyces Lividans Xylan Binding Domain Cbm13 In
Complex With Xylopentaose
Length = 130
Score = 29.6 bits (65), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 22/55 (40%), Gaps = 3/55 (5%)
Query: 68 CLDTLGNVNDGVVGLYPCHHTGGNQAWSLTKEGFI--KHHDTCLTIVNEMPGTGT 120
CLD G N V +Y C G NQ W L +G + CL V GT
Sbjct: 59 CLDAAGTSNGSKVQIYSCWG-GDNQKWRLNSDGSVVGVQSGLCLDAVGNGTANGT 112
Score = 25.4 bits (54), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 20/38 (52%), Gaps = 2/38 (5%)
Query: 82 LYPCHHTGGNQAWSLTKEGFIK-HHDTCLTIVNEMPGT 118
L+ CH +G NQ W+ T G ++ + D CL G+
Sbjct: 33 LWDCH-SGTNQQWAATDAGELRVYGDKCLDAAGTSNGS 69
>pdb|1GGP|B Chain B, Crystal Structure Of Trichosanthes Kirilowii Lectin-1 And
Its Relation To The Type 2 Ribosome Inactivating
Proteins
Length = 254
Score = 29.3 bits (64), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 15/55 (27%), Positives = 24/55 (43%)
Query: 58 TIGIIHQGAWCLDTLGNVNDGVVGLYPCHHTGGNQAWSLTKEGFIKHHDTCLTIV 112
T+ I + +C D G +G + NQ W+L +E I+ + CLT
Sbjct: 5 TVRIAGRDGFCADVNGEGQNGAAIILKKCAENDNQLWTLKREATIRSNGGCLTTA 59
>pdb|1ONK|B Chain B, Mistletoe Lectin I From Viscum Album
Length = 263
Score = 28.5 bits (62), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 29/64 (45%), Gaps = 11/64 (17%)
Query: 76 NDGVVGLYPCHHTGGNQAWSLTKEGFIK---HHDTCL--------TIVNEMPGTGTHEEV 124
N G V + C + NQ W+L +G I+ + D CL T++N + +G
Sbjct: 156 NGGSVWVETCDSSQKNQKWALYGDGSIRPKQNQDQCLTSGRDSVSTVINIVSCSGASGSQ 215
Query: 125 RELF 128
R +F
Sbjct: 216 RWVF 219
Score = 26.6 bits (57), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 10/32 (31%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Query: 80 VGLYPCHHTGG-NQAWSLTKEGFIKHHDTCLT 110
+ L+P NQ W++ ++G I+ + +CLT
Sbjct: 35 IQLWPSKSNNDPNQLWTIKRDGTIRSNGSCLT 66
>pdb|3O5W|B Chain B, Binding Of Kinetin In The Active Site Of Mistletoe Lectin
I
Length = 263
Score = 28.1 bits (61), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 34/61 (55%), Gaps = 3/61 (4%)
Query: 53 SSSQITIGIIHQGAWCLDTLGN-VNDG-VVGLYPCHHTGG-NQAWSLTKEGFIKHHDTCL 109
S+S+ T+ I+ + +D + +DG + L+P NQ W++ K+G I+ + +CL
Sbjct: 6 SASEPTVRIVGRNGMTVDVRDDDFHDGNQIQLWPSKSNNDPNQLWTIKKDGTIRSNGSCL 65
Query: 110 T 110
T
Sbjct: 66 T 66
>pdb|2RG9|B Chain B, Crystal Structure Of Viscum Album Mistletoe Lectin I In
Native State At 1.95 A Resolution, Comparison Of
Structure Active Site Conformation In Ricin And In
Viscumin
Length = 263
Score = 27.3 bits (59), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 11/32 (34%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Query: 80 VGLYPCHHTGG-NQAWSLTKEGFIKHHDTCLT 110
+ L+P NQ W++ K+G I+ + +CLT
Sbjct: 35 IQLWPSKSNNDPNQLWTIKKDGTIRSNGSCLT 66
>pdb|1PUM|B Chain B, Mistletoe Lectin I In Complex With Galactose
pdb|1SZ6|B Chain B, Mistletoe Lectin I From Viscum Album. Crystal Structure At
2.05 A Resolution
Length = 263
Score = 27.3 bits (59), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 9/20 (45%), Positives = 15/20 (75%)
Query: 91 NQAWSLTKEGFIKHHDTCLT 110
NQ W++ K+G I+ + +CLT
Sbjct: 47 NQLWTIKKDGTIRSNGSCLT 66
>pdb|1PUU|B Chain B, Mistletoe Lectin I In Complex With Lactose
Length = 263
Score = 27.3 bits (59), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 11/32 (34%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Query: 80 VGLYPCHHTGG-NQAWSLTKEGFIKHHDTCLT 110
+ L+P NQ W++ K+G I+ + +CLT
Sbjct: 35 IQLWPSKSNNDPNQLWTIKKDGTIRSNGSCLT 66
>pdb|1M2T|B Chain B, Mistletoe Lectin I From Viscum Album In Complex With
Adenine Monophosphate. Crystal Structure At 1.9 A
Resolution
pdb|2R9K|B Chain B, Crystal Structure Of Misteltoe Lectin I In Complex With
Phloretamide
Length = 263
Score = 27.3 bits (59), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 9/20 (45%), Positives = 15/20 (75%)
Query: 91 NQAWSLTKEGFIKHHDTCLT 110
NQ W++ K+G I+ + +CLT
Sbjct: 47 NQLWTIKKDGTIRSNGSCLT 66
>pdb|3D7W|B Chain B, Mistletoe Lectin I In Complex With Zeatin
Length = 265
Score = 27.3 bits (59), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 9/20 (45%), Positives = 15/20 (75%)
Query: 91 NQAWSLTKEGFIKHHDTCLT 110
NQ W++ K+G I+ + +CLT
Sbjct: 47 NQLWTIKKDGTIRSNGSCLT 66
>pdb|1SQ1|A Chain A, Crystal Structure Of The Chorismate Synthase From
Campylobacter Jejuni, Northeast Structural Genomics
Target Br19
Length = 370
Score = 26.9 bits (58), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 12/47 (25%), Positives = 22/47 (46%)
Query: 84 PCHHTGGNQAWSLTKEGFIKHHDTCLTIVNEMPGTGTHEEVRELFRP 130
P + Q S EG+ H + + NE + ++ +++LFRP
Sbjct: 55 PRKESDKAQVLSGVFEGYTTGHPIAIVVFNENAHSKDYDNLKDLFRP 101
>pdb|1CE7|B Chain B, Mistletoe Lectin I From Viscum Album
pdb|2MLL|B Chain B, Mistletoe Lectin I From Viscum Album
Length = 255
Score = 26.6 bits (57), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 8/20 (40%), Positives = 15/20 (75%)
Query: 91 NQAWSLTKEGFIKHHDTCLT 110
NQ W++ ++G I+ + +CLT
Sbjct: 43 NQLWTIKRDGTIRSNGSCLT 62
>pdb|1OQL|B Chain B, Mistletoe Lectin I From Viscum Album Complexed With
Galactose
Length = 263
Score = 26.6 bits (57), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 3/38 (7%)
Query: 76 NDGVVGLYPCHHTGGNQAWSLTKEGFIK---HHDTCLT 110
N G V + C + NQ W+L +G I+ + D CLT
Sbjct: 156 NGGSVWVETCVSSQKNQRWALYGDGSIRPKQNQDQCLT 193
Score = 26.6 bits (57), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 8/20 (40%), Positives = 15/20 (75%)
Query: 91 NQAWSLTKEGFIKHHDTCLT 110
NQ W++ ++G I+ + +CLT
Sbjct: 47 NQLWTIKRDGTIRSNGSCLT 66
>pdb|1PC8|B Chain B, Crystal Structure Of A Novel Form Of Mistletoe Lectin From
Himalayan Viscum Album L. At 3.8a Resolution
pdb|1TFM|B Chain B, Crystal Structure Of A Ribosome Inactivating Protein In
Its Naturally Inhibited Form
pdb|1YF8|B Chain B, Crystal Structure Of Himalayan Mistletoe Rip Reveals The
Presence Of A Natural Inhibitor And A New Functionally
Active Sugar-Binding Site
Length = 255
Score = 26.6 bits (57), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 8/20 (40%), Positives = 15/20 (75%)
Query: 91 NQAWSLTKEGFIKHHDTCLT 110
NQ W++ ++G I+ + +CLT
Sbjct: 43 NQLWTIKRDGTIRSNGSCLT 62
>pdb|2Q3N|B Chain B, Agglutinin From Abrus Precatorius (Apa-I)
pdb|2ZR1|B Chain B, Agglutinin From Abrus Precatorius
pdb|2ZR1|D Chain D, Agglutinin From Abrus Precatorius
Length = 267
Score = 25.4 bits (54), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 26/63 (41%), Gaps = 3/63 (4%)
Query: 58 TIGIIHQGAWCLDTLGNV--NDGVVGLYPCH-HTGGNQAWSLTKEGFIKHHDTCLTIVNE 114
T+ I + C+D N N + L+ C NQ W+L + I+ CLT
Sbjct: 15 TVRIGGRDGLCVDVSDNAYNNGNPIILWKCKDQLEVNQLWTLKSDKTIRSKGKCLTTYGY 74
Query: 115 MPG 117
PG
Sbjct: 75 APG 77
>pdb|1ABR|B Chain B, Crystal Structure Of Abrin-A
Length = 267
Score = 25.4 bits (54), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 17/64 (26%), Positives = 28/64 (43%), Gaps = 3/64 (4%)
Query: 58 TIGIIHQGAWCLDTLGNV--NDGVVGLYPCH-HTGGNQAWSLTKEGFIKHHDTCLTIVNE 114
T+ I + C+D N N + ++ C NQ W+L + I+ + CLT
Sbjct: 15 TVRIGGRDGMCVDVYDNGYHNGNRIIMWKCKDRLEENQLWTLKSDKTIRSNGKCLTTYGY 74
Query: 115 MPGT 118
PG+
Sbjct: 75 APGS 78
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.140 0.460
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,809,121
Number of Sequences: 62578
Number of extensions: 193454
Number of successful extensions: 299
Number of sequences better than 100.0: 28
Number of HSP's better than 100.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 258
Number of HSP's gapped (non-prelim): 49
length of query: 130
length of database: 14,973,337
effective HSP length: 88
effective length of query: 42
effective length of database: 9,466,473
effective search space: 397591866
effective search space used: 397591866
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 45 (21.9 bits)