Query psy15024
Match_columns 130
No_of_seqs 162 out of 1104
Neff 7.4
Searched_HMMs 46136
Date Fri Aug 16 18:27:46 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15024.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/15024hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3738|consensus 100.0 1.3E-40 2.7E-45 265.9 3.0 125 1-125 376-502 (559)
2 KOG3736|consensus 100.0 6.7E-37 1.4E-41 255.3 8.8 120 1-123 397-520 (578)
3 KOG3737|consensus 100.0 9.2E-33 2E-37 220.9 5.2 120 1-124 420-544 (603)
4 cd02510 pp-GalNAc-T pp-GalNAc- 99.1 1E-10 2.2E-15 90.8 3.4 46 1-46 254-299 (299)
5 PF00652 Ricin_B_lectin: Ricin 98.9 8.5E-09 1.8E-13 69.3 7.6 66 58-124 1-73 (124)
6 cd00161 RICIN Ricin-type beta- 98.8 2.1E-08 4.5E-13 66.7 7.7 59 65-123 9-69 (124)
7 cd00161 RICIN Ricin-type beta- 98.7 1.3E-07 2.9E-12 62.7 7.9 65 60-124 44-113 (124)
8 smart00458 RICIN Ricin-type be 98.6 1.9E-07 4.2E-12 62.2 7.1 63 60-123 39-104 (117)
9 PF00652 Ricin_B_lectin: Ricin 98.5 3.9E-07 8.4E-12 61.1 6.8 65 60-124 46-115 (124)
10 smart00458 RICIN Ricin-type be 98.5 4.7E-07 1E-11 60.3 6.1 56 64-122 5-61 (117)
11 PF14200 RicinB_lectin_2: Rici 97.9 4.5E-05 9.7E-10 50.7 6.7 65 59-124 16-92 (105)
12 KOG3736|consensus 97.8 4.7E-05 1E-09 64.8 5.6 56 58-117 498-555 (578)
13 KOG3738|consensus 95.8 0.0094 2E-07 49.2 3.5 52 64-116 481-534 (559)
14 PF14200 RicinB_lectin_2: Rici 95.3 0.029 6.2E-07 37.0 3.8 36 61-97 65-105 (105)
15 PLN02899 alpha-galactosidase 94.9 0.024 5.3E-07 48.9 3.2 49 65-114 486-541 (633)
16 KOG3737|consensus 89.1 0.42 9.2E-06 39.8 3.2 56 62-123 526-584 (603)
17 PF03498 CDtoxinA: Cytolethal 82.6 3 6.6E-05 29.9 4.6 47 65-114 61-113 (150)
18 PF03002 Somatostatin: Somatos 80.8 0.41 8.9E-06 22.1 -0.3 10 31-40 3-12 (18)
19 cd08321 Pyrin_ASC-like Pyrin D 54.3 3.5 7.6E-05 26.4 -0.4 13 36-48 17-29 (82)
20 smart00446 LRRcap occurring C- 28.8 48 0.001 16.7 1.5 21 2-22 2-22 (26)
21 PF10461 Peptidase_S68: Peptid 27.9 15 0.00033 19.8 -0.5 7 37-43 25-31 (35)
22 cd05896 Ig1_IL1RAPL-1_like Fir 26.3 21 0.00044 24.1 -0.1 17 32-48 19-35 (104)
23 PF05595 DUF771: Domain of unk 26.0 43 0.00093 21.6 1.3 26 21-47 21-46 (91)
24 PF07598 DUF1561: Protein of u 25.2 76 0.0016 27.8 2.9 33 65-97 90-127 (632)
25 cd08684 C2A_Tac2-N C2 domain f 24.3 24 0.00051 23.6 -0.1 13 33-45 6-18 (103)
26 TIGR01319 glmL_fam conserved h 23.5 51 0.0011 28.0 1.7 37 17-53 154-191 (463)
No 1
>KOG3738|consensus
Probab=100.00 E-value=1.3e-40 Score=265.88 Aligned_cols=125 Identities=46% Similarity=0.939 Sum_probs=118.8
Q ss_pred CcchhHHHhhhCCCCCCCCCCCchHHHHHHHHcCCcCchhhhhhhcCCCCCCCCCcceeceeecCceeeeccCCCCCCeE
Q psy15024 1 MDNYKHYYYAEVPLAKTIPFGDISDRVALRERLQCKPFKWYLEHVYPELQVPSSSQITIGIIHQGAWCLDTLGNVNDGVV 80 (130)
Q Consensus 1 mDeyk~~~y~~~P~~~~~~~Gdis~r~~LR~~L~CksF~WyL~nV~pel~~p~~~~~~~G~i~~~~~CLD~~~~~~g~~v 80 (130)
|||||++||+++|.|+.+++|+|.+|++||++|+||||+|||+||||||.+|.....++|.|+++..|||+++..+.+.+
T Consensus 376 mDEYK~~yyaarPsAr~vpfg~i~~rL~~Rk~l~CksFkWYLenVyPeL~ip~~~~~~~g~lrqg~~Cl~s~~~~~~~~~ 455 (559)
T KOG3738|consen 376 MDEYKNYYYAARPSARRVPFGNIYDRLELRKKLRCKSFKWYLENVYPELRIPFKELIATGTLRQGDNCLDSQGQNSQEAL 455 (559)
T ss_pred HHHHHHHHHhcCchhhcCCCccHHHHHHHHhhcCCcchhhhhhhcCcceeccccccccccchhccchhhhhhhcccccCc
Confidence 89999999999999999999999999999999999999999999999999999888999999999999999988777789
Q ss_pred EEEecCCCCCceeEEE--ccCCeEeecCeeeEEeCCCCCCeeEEeec
Q psy15024 81 GLYPCHHTGGNQAWSL--TKEGFIKHHDTCLTIVNEMPGTGTHEEVR 125 (130)
Q Consensus 81 ~l~~C~~~~~~Q~W~~--t~~~~Ir~~~~CLd~~~~~~g~~V~l~~~ 125 (130)
+|+.||+.+++|.|.+ +++..|.+.++||++.+.++|++|.|+.-
T Consensus 456 gl~~C~~s~~nqqwa~~~t~~~~~~~~elCL~v~~~~pg~~v~l~~C 502 (559)
T KOG3738|consen 456 GLASCHGSGGNQQWAFLRTSTQLITHRELCLAVGSNTPGSPVALVPC 502 (559)
T ss_pred ceeecccCCCCcchhhhhhhhhHHHHHhhhheeecCCCCCeEEEEec
Confidence 9999999999999999 77778889999999999999999999864
No 2
>KOG3736|consensus
Probab=100.00 E-value=6.7e-37 Score=255.30 Aligned_cols=120 Identities=46% Similarity=0.804 Sum_probs=107.7
Q ss_pred CcchhHHHhhhCCCCCCCCCCCchHHHHHHHHcCCcCchhhhhhhcCCCCCCCCCcceeceeec--CceeeeccCC--CC
Q psy15024 1 MDNYKHYYYAEVPLAKTIPFGDISDRVALRERLQCKPFKWYLEHVYPELQVPSSSQITIGIIHQ--GAWCLDTLGN--VN 76 (130)
Q Consensus 1 mDeyk~~~y~~~P~~~~~~~Gdis~r~~LR~~L~CksF~WyL~nV~pel~~p~~~~~~~G~i~~--~~~CLD~~~~--~~ 76 (130)
|||||++||.++|.++.+++||||+|++||++|+||||+|||+|||||+.+|.....++|+|++ ++.|+|.... ..
T Consensus 397 mDeyK~~~y~~~P~~~~~d~GDvseR~~LR~~L~CKsFkWyL~nVyPel~~~~~~~~~~G~i~~~~~~~cld~~~~~~~~ 476 (578)
T KOG3736|consen 397 MDEYKEQFYKRMPGLRNIDEGDLTERKALRERLNCKSFKWYLENVYPELYLPTPHVYASGEIRNGNPNLCLDTERAPAGQ 476 (578)
T ss_pred hHHHHHHHHhhCccccccCCCCchhHHHHHHhcCCccccchHhhcCccccCCCCcccccceeccCCcchhhhhhchhccC
Confidence 8999999999999999999999999999999999999999999999999999877688999998 5689998763 23
Q ss_pred CCeEEEEecCCCCCceeEEEccCCeEeecCeeeEEeCCCCCCeeEEe
Q psy15024 77 DGVVGLYPCHHTGGNQAWSLTKEGFIKHHDTCLTIVNEMPGTGTHEE 123 (130)
Q Consensus 77 g~~v~l~~C~~~~~~Q~W~~t~~~~Ir~~~~CLd~~~~~~g~~V~l~ 123 (130)
+.++++++||+.+++|.|.||+.++|+..++||++. ..|. |+|.
T Consensus 477 ~~~~~~~~Ch~~~~~Q~~~yT~~~eir~~~~cl~~~--~~~~-v~l~ 520 (578)
T KOG3736|consen 477 GMAVGLYPCHGPGGNQYFPYTKQGEIRIGDLCLDVD--DAGK-VTLY 520 (578)
T ss_pred CCcceEecCCCccccccccccCCcceEECCEEeccc--cCCc-eEEE
Confidence 578999999999999999999999999999999986 2333 6554
No 3
>KOG3737|consensus
Probab=99.97 E-value=9.2e-33 Score=220.86 Aligned_cols=120 Identities=39% Similarity=0.837 Sum_probs=106.4
Q ss_pred CcchhHHHhhhCCCCCCCCCCCchHHHHHHHHcCCcCchhhhhhhcCCCC--CCC-CCcceeceeec--CceeeeccCCC
Q psy15024 1 MDNYKHYYYAEVPLAKTIPFGDISDRVALRERLQCKPFKWYLEHVYPELQ--VPS-SSQITIGIIHQ--GAWCLDTLGNV 75 (130)
Q Consensus 1 mDeyk~~~y~~~P~~~~~~~Gdis~r~~LR~~L~CksF~WyL~nV~pel~--~p~-~~~~~~G~i~~--~~~CLD~~~~~ 75 (130)
|||||+|||.+.|.++.+++||||++++||++|+||||+|||++|+-++. .|. +....||+||+ ++.|||+++..
T Consensus 420 ~Ddyk~YfytreP~a~~l~~GDISeqlalr~~lnCkSFkWfMe~iAYDv~~~yP~lP~N~~WGE~R~~at~~ClDsMG~~ 499 (603)
T KOG3737|consen 420 WDDYKDYFYTREPEAQALPYGDISEQLALREDLNCKSFKWFMEEIAYDVTSHYPLLPKNVDWGEIRGFATAYCLDSMGKT 499 (603)
T ss_pred HHhhhhheeecChhhccCCcccHHHHHHhHhhcCCchhHHHHHHHHHHHHhcCCCCCCCCcchhccCcccchhHHhcCCC
Confidence 79999999999999999999999999999999999999999999977643 232 23347999999 67999999999
Q ss_pred CCCeEEEEecCCCCCceeEEEccCCeEeecCeeeEEeCCCCCCeeEEee
Q psy15024 76 NDGVVGLYPCHHTGGNQAWSLTKEGFIKHHDTCLTIVNEMPGTGTHEEV 124 (130)
Q Consensus 76 ~g~~v~l~~C~~~~~~Q~W~~t~~~~Ir~~~~CLd~~~~~~g~~V~l~~ 124 (130)
+++.+++.+||++++||.++++..|++.+.+.||++ +|+.|++..
T Consensus 500 p~g~mglt~CHg~GgNQL~RlN~agQl~qge~CltA----dg~~i~~~h 544 (603)
T KOG3737|consen 500 PGGFMGLTPCHGMGGNQLFRLNEAGQLMQGEQCLTA----DGSKIMITH 544 (603)
T ss_pred CCCccccccccCCCCceEEEeccccchhccceeeec----CCceEEEEE
Confidence 999999999999999999999999999999999996 446666543
No 4
>cd02510 pp-GalNAc-T pp-GalNAc-T initiates the formation of mucin-type O-linked glycans. UDP-GalNAc: polypeptide alpha-N-acetylgalactosaminyltransferases (pp-GalNAc-T) initiate the formation of mucin-type, O-linked glycans by catalyzing the transfer of alpha-N-acetylgalactosamine (GalNAc) from UDP-GalNAc to hydroxyl groups of Ser or Thr residues of core proteins to form the Tn antigen (GalNAc-a-1-O-Ser/Thr). These enzymes are type II membrane proteins with a GT-A type catalytic domain and a lectin domain located on the lumen side of the Golgi apparatus. In human, there are 15 isozymes of pp-GalNAc-Ts, representing the largest of all glycosyltransferase families. Each isozyme has unique but partially redundant substrate specificity for glycosylation sites on acceptor proteins.
Probab=99.06 E-value=1e-10 Score=90.84 Aligned_cols=46 Identities=61% Similarity=1.223 Sum_probs=43.7
Q ss_pred CcchhHHHhhhCCCCCCCCCCCchHHHHHHHHcCCcCchhhhhhhc
Q psy15024 1 MDNYKHYYYAEVPLAKTIPFGDISDRVALRERLQCKPFKWYLEHVY 46 (130)
Q Consensus 1 mDeyk~~~y~~~P~~~~~~~Gdis~r~~LR~~L~CksF~WyL~nV~ 46 (130)
||+++++||...|.+..+..||+++|++++++|+||+|+||++.++
T Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~ 299 (299)
T cd02510 254 MDEYKEYFYKARPELRNIDYGDLSERKALRERLKCKSFKWYLENVY 299 (299)
T ss_pred HHHHHHHHHhcCcccccCCCCCHHHHHHHHHHcCCCCchHHHhhcC
Confidence 6899999999999999999999999999999999999999999874
No 5
>PF00652 Ricin_B_lectin: Ricin-type beta-trefoil lectin domain; InterPro: IPR000772 Ricin is a legume lectin from the seeds of the castor bean plant, Ricinus communis. The seeds are poisonous to people, animals and insects and just one milligram of ricin can kill an adult. Primary structure analysis has shown the presence of a similar domain in many carbohydrate-recognition proteins like plant and bacterial AB-toxins, glycosidases or proteases [, , ]. This domain, known as the ricin B lectin domain, can be present in one or more copies and has been shown in some instance to bind simple sugars, such as galactose or lactose. The ricin B lectin domain is composed of three homologous subdomains of 40 amino acids (alpha, beta and gamma) and a linker peptide of around 15 residues (lambda). It has been proposed that the ricin B lectin domain arose by gene triplication from a primitive 40 residue galactoside-binding peptide [, ]. The most characteristic, though not completely conserved, sequence feature is the presence of a Q-W pattern. Consequently, the ricin B lectin domain as also been refered as the (QxW)3 domain and the three homologous regions as the QxW repeats [, ]. A disulphide bond is also conserved in some of the QxW repeats []. The 3D structure of the ricin B chain has shown that the three QxW repeats pack around a pseudo threefold axis that is stabilised by the lambda linker []. The ricin B lectin domain has no major segments of a helix or beta sheet but each of the QxW repeats contains an omega loop []. An idealized omega-loop is a compact, contiguous segment of polypeptide that traces a 'loop-shaped' path in three-dimensional space; the main chain resembles a Greek omega.; PDB: 2VLC_B 3A22_B 3A21_B 3A23_B 1GGP_B 1VCL_A 2Z48_B 2Z49_A 2D7R_A 2D7I_A ....
Probab=98.90 E-value=8.5e-09 Score=69.27 Aligned_cols=66 Identities=32% Similarity=0.575 Sum_probs=51.7
Q ss_pred eeceeec---Cceeeecc-CCCCCCeEEEEecCCCCCceeEEEccCCeEee---cCeeeEEeCCCCCCeeEEee
Q psy15024 58 TIGIIHQ---GAWCLDTL-GNVNDGVVGLYPCHHTGGNQAWSLTKEGFIKH---HDTCLTIVNEMPGTGTHEEV 124 (130)
Q Consensus 58 ~~G~i~~---~~~CLD~~-~~~~g~~v~l~~C~~~~~~Q~W~~t~~~~Ir~---~~~CLd~~~~~~g~~V~l~~ 124 (130)
|+|.|++ +++|||+. ....+++|++++|++ ..+|.|.++.++.|+. ..+||++....++++|.+..
T Consensus 1 ~~g~i~~~~~~~~cl~~~~~~~~~~~v~l~~c~~-~~~Q~w~~~~~~~i~~~~~~~~CL~~~~~~~~~~i~l~~ 73 (124)
T PF00652_consen 1 ASGYIRNVNKSGLCLDVQGSTKNGSPVVLYPCDG-SDNQLWRFDPDGQIRSNNNPNLCLDVDGSSPGTKIVLWP 73 (124)
T ss_dssp EEEEEEEEEGGGEEEEEGGSSSTTTBEEEEE--S-SGGGEEEEETTSBEEETTETTEEEEESSSSTTEBEEEEE
T ss_pred CceEEEEeeCCCCeEEEcCCCCCCCEEEEEECCC-CCceeEEEcCCCceeeccCcceEEEeeccCCCceEEEee
Confidence 5788765 67999987 335688999999999 5789999999999988 34599998866677887754
No 6
>cd00161 RICIN Ricin-type beta-trefoil; Carbohydrate-binding domain formed from presumed gene triplication. The domain is found in a variety of molecules serving diverse functions such as enzymatic activity, inhibitory toxicity and signal transduction. Highly specific ligand binding occurs on exposed surfaces of the compact domain sturcture.
Probab=98.83 E-value=2.1e-08 Score=66.66 Aligned_cols=59 Identities=39% Similarity=0.809 Sum_probs=49.1
Q ss_pred CceeeeccCCCCCCeEEEEecCCCCCceeEEEccCCeEeec--CeeeEEeCCCCCCeeEEe
Q psy15024 65 GAWCLDTLGNVNDGVVGLYPCHHTGGNQAWSLTKEGFIKHH--DTCLTIVNEMPGTGTHEE 123 (130)
Q Consensus 65 ~~~CLD~~~~~~g~~v~l~~C~~~~~~Q~W~~t~~~~Ir~~--~~CLd~~~~~~g~~V~l~ 123 (130)
+++|||+.+...+..|.+++|++...+|.|.++.+|.|+.. ++||++.+..+|++|.+.
T Consensus 9 ~~~cL~~~~~~~~~~v~~~~c~~~~~~Q~W~~~~~g~~~~~~~~~Cl~~~~~~~~~~~~~~ 69 (124)
T cd00161 9 TGLCLDVNGGSDGGPVQLYPCHGNGNNQKWTLTSDGTIRIKSSNLCLDVGGDAPGSKVRLY 69 (124)
T ss_pred CCeEEECCCCCCCCEEEEEECCCCCccCCEEEeCCCeEEEcCCCeEEcccCCCCCCEEEEE
Confidence 68999987655678899999999767999999999998874 999999876667777664
No 7
>cd00161 RICIN Ricin-type beta-trefoil; Carbohydrate-binding domain formed from presumed gene triplication. The domain is found in a variety of molecules serving diverse functions such as enzymatic activity, inhibitory toxicity and signal transduction. Highly specific ligand binding occurs on exposed surfaces of the compact domain sturcture.
Probab=98.68 E-value=1.3e-07 Score=62.68 Aligned_cols=65 Identities=31% Similarity=0.559 Sum_probs=51.2
Q ss_pred ceeec--CceeeeccCCCCCCeEEEEecCCCCCceeEEEccCCeEee--cCeeeEEeCCC-CCCeeEEee
Q psy15024 60 GIIHQ--GAWCLDTLGNVNDGVVGLYPCHHTGGNQAWSLTKEGFIKH--HDTCLTIVNEM-PGTGTHEEV 124 (130)
Q Consensus 60 G~i~~--~~~CLD~~~~~~g~~v~l~~C~~~~~~Q~W~~t~~~~Ir~--~~~CLd~~~~~-~g~~V~l~~ 124 (130)
|.|+. +++|||+.+...+..+.+++|++...+|.|.+..++.|++ .++||++.+.. .|++|.+..
T Consensus 44 g~~~~~~~~~Cl~~~~~~~~~~~~~~~c~~~~~~Q~W~~~~~~~i~~~~~~~cl~~~~~~~~~~~v~~~~ 113 (124)
T cd00161 44 GTIRIKSSNLCLDVGGDAPGSKVRLYTCSGGSDNQRWTFNKDGTIRNLKSGKCLDVKGGNTNGTNLILWT 113 (124)
T ss_pred CeEEEcCCCeEEcccCCCCCCEEEEEECCCCCcCCEEEECCCcEEEECCCCeEEeCCCCCCCCCEEEEEe
Confidence 55555 4799998765567889999999866799999998888987 59999997653 466776654
No 8
>smart00458 RICIN Ricin-type beta-trefoil. Carbohydrate-binding domain formed from presumed gene triplication.
Probab=98.61 E-value=1.9e-07 Score=62.19 Aligned_cols=63 Identities=32% Similarity=0.584 Sum_probs=48.5
Q ss_pred ceeec-CceeeeccCCCCCCeEEEEecCCCCCceeEEEccCCeEee--cCeeeEEeCCCCCCeeEEe
Q psy15024 60 GIIHQ-GAWCLDTLGNVNDGVVGLYPCHHTGGNQAWSLTKEGFIKH--HDTCLTIVNEMPGTGTHEE 123 (130)
Q Consensus 60 G~i~~-~~~CLD~~~~~~g~~v~l~~C~~~~~~Q~W~~t~~~~Ir~--~~~CLd~~~~~~g~~V~l~ 123 (130)
|.|+. +++|||+.+... ..+.++.|++...+|.|.+...+.|++ .++||++......++|.+.
T Consensus 39 g~~~~~~~~Cl~~~~~~~-~~v~l~~c~~~~~~Q~W~~~~~~~i~~~~~~~cl~~~~~~~~~~~~~~ 104 (117)
T smart00458 39 GAIRIATDLCLTANGNTG-STVTLYSCDGDADNQYWTVNKDGTIRNPDSGLCLDVKDGNTGTKVILW 104 (117)
T ss_pred CeEEecCCccCccCCCCC-CEEEEEECCCCCcCCEEEECCCeeEEeCCCCEEEecCCCCCCceEEEE
Confidence 66766 789999865432 689999999866899999998888987 8999999765433355443
No 9
>PF00652 Ricin_B_lectin: Ricin-type beta-trefoil lectin domain; InterPro: IPR000772 Ricin is a legume lectin from the seeds of the castor bean plant, Ricinus communis. The seeds are poisonous to people, animals and insects and just one milligram of ricin can kill an adult. Primary structure analysis has shown the presence of a similar domain in many carbohydrate-recognition proteins like plant and bacterial AB-toxins, glycosidases or proteases [, , ]. This domain, known as the ricin B lectin domain, can be present in one or more copies and has been shown in some instance to bind simple sugars, such as galactose or lactose. The ricin B lectin domain is composed of three homologous subdomains of 40 amino acids (alpha, beta and gamma) and a linker peptide of around 15 residues (lambda). It has been proposed that the ricin B lectin domain arose by gene triplication from a primitive 40 residue galactoside-binding peptide [, ]. The most characteristic, though not completely conserved, sequence feature is the presence of a Q-W pattern. Consequently, the ricin B lectin domain as also been refered as the (QxW)3 domain and the three homologous regions as the QxW repeats [, ]. A disulphide bond is also conserved in some of the QxW repeats []. The 3D structure of the ricin B chain has shown that the three QxW repeats pack around a pseudo threefold axis that is stabilised by the lambda linker []. The ricin B lectin domain has no major segments of a helix or beta sheet but each of the QxW repeats contains an omega loop []. An idealized omega-loop is a compact, contiguous segment of polypeptide that traces a 'loop-shaped' path in three-dimensional space; the main chain resembles a Greek omega.; PDB: 2VLC_B 3A22_B 3A21_B 3A23_B 1GGP_B 1VCL_A 2Z48_B 2Z49_A 2D7R_A 2D7I_A ....
Probab=98.53 E-value=3.9e-07 Score=61.09 Aligned_cols=65 Identities=26% Similarity=0.495 Sum_probs=51.7
Q ss_pred ceeec---CceeeeccCCCCCCeEEEEecCCCCCceeEEEccCCeEee--cCeeeEEeCCCCCCeeEEee
Q psy15024 60 GIIHQ---GAWCLDTLGNVNDGVVGLYPCHHTGGNQAWSLTKEGFIKH--HDTCLTIVNEMPGTGTHEEV 124 (130)
Q Consensus 60 G~i~~---~~~CLD~~~~~~g~~v~l~~C~~~~~~Q~W~~t~~~~Ir~--~~~CLd~~~~~~g~~V~l~~ 124 (130)
|.|+. ..+||++.+...++.|.+.+|+....+|.|.+..++.|++ +++||++.+...+++|.+..
T Consensus 46 ~~i~~~~~~~~CL~~~~~~~~~~i~l~~C~~~~~~Q~W~~~~~~~i~n~~s~~cL~~~~~~~~~~l~~~~ 115 (124)
T PF00652_consen 46 GQIRSNNNPNLCLDVDGSSPGTKIVLWPCDSNSSNQRWKFDPDGRIRNKNSGLCLDVKGGSDGNPLVLWP 115 (124)
T ss_dssp SBEEETTETTEEEEESSSSTTEBEEEEETTTTGGGGBEEEETTSBEEETTTTEEEEEGGGSTTEBEEEEE
T ss_pred CceeeccCcceEEEeeccCCCceEEEeeccCCccCCeEEEcCCeeEEeCCCCEEEEecCCCCCCEEEEEE
Confidence 45554 3359998765567789999999866679999998889988 68999998766778887763
No 10
>smart00458 RICIN Ricin-type beta-trefoil. Carbohydrate-binding domain formed from presumed gene triplication.
Probab=98.47 E-value=4.7e-07 Score=60.28 Aligned_cols=56 Identities=43% Similarity=0.739 Sum_probs=44.3
Q ss_pred cCceeeeccCCCCCCeEEEEecCCCCCceeEEEccCCeEee-cCeeeEEeCCCCCCeeEE
Q psy15024 64 QGAWCLDTLGNVNDGVVGLYPCHHTGGNQAWSLTKEGFIKH-HDTCLTIVNEMPGTGTHE 122 (130)
Q Consensus 64 ~~~~CLD~~~~~~g~~v~l~~C~~~~~~Q~W~~t~~~~Ir~-~~~CLd~~~~~~g~~V~l 122 (130)
..++|||+.+.. ..|.+++|++.+.+|.|.|+.+|.|+. .++||++.+.+. ++|.+
T Consensus 5 ~~~~Cl~~~~~~--~~v~l~~c~~~~~~Q~w~~~~~g~~~~~~~~Cl~~~~~~~-~~v~l 61 (117)
T smart00458 5 NTGKCLDVNGNS--NPVGLFDCHGTGGNQLWKLTSDGAIRIATDLCLTANGNTG-STVTL 61 (117)
T ss_pred cCCccEecCCCC--ceEEEEeCCCCCccceEEEeCCCeEEecCCccCccCCCCC-CEEEE
Confidence 367899987643 579999999866789999999999998 899999876432 45544
No 11
>PF14200 RicinB_lectin_2: Ricin-type beta-trefoil lectin domain-like; PDB: 2X2S_C 2X2T_A 2VSE_B 2VSA_A 3EF2_A 2IHO_A 3HZB_H 1YBI_B 3PHZ_A 3NBE_A ....
Probab=97.93 E-value=4.5e-05 Score=50.73 Aligned_cols=65 Identities=23% Similarity=0.365 Sum_probs=50.2
Q ss_pred eceeec--CceeeeccCC--CCCCeEEEEecCCCCCceeEEEccC--C--eEee--cCeeeEEeCC--CCCCeeEEee
Q psy15024 59 IGIIHQ--GAWCLDTLGN--VNDGVVGLYPCHHTGGNQAWSLTKE--G--FIKH--HDTCLTIVNE--MPGTGTHEEV 124 (130)
Q Consensus 59 ~G~i~~--~~~CLD~~~~--~~g~~v~l~~C~~~~~~Q~W~~t~~--~--~Ir~--~~~CLd~~~~--~~g~~V~l~~ 124 (130)
...|++ +++|||+.+. ..|..|.++.|++ ..+|.|.+... | .|++ +++|||+.+. .+|++|.+-.
T Consensus 16 ~Y~i~n~~sg~~L~v~~~~~~~g~~v~~~~~~~-~~~Q~W~i~~~~~g~y~I~n~~s~~~Ldv~~~~~~~g~~v~~~~ 92 (105)
T PF14200_consen 16 YYKIRNVNSGKYLDVAGGSTANGTNVQQWTCNG-NDNQQWKIEPVGDGYYRIRNKNSGKVLDVAGGSTANGTNVQQWE 92 (105)
T ss_dssp EEEEEETTTTEEEEEGCTTCSTTEBEEEEESSS-SGGGEEEEEESTTSEEEEEETSTTEEEEEGGGSSSTTEBEEEEE
T ss_pred EEEEEECCCCCEEEeCCCCcCCCcEEEEecCCC-CcCcEEEEEEecCCeEEEEECCCCcEEEECCCCCCCCCEEEEEe
Confidence 355766 7899998765 3677899999998 57999999754 4 3665 8999999854 6788887743
No 12
>KOG3736|consensus
Probab=97.77 E-value=4.7e-05 Score=64.84 Aligned_cols=56 Identities=38% Similarity=0.689 Sum_probs=46.3
Q ss_pred eeceeecCceeeeccCCCCCCeEEEEecCCCCCceeEEEccCCeEee--cCeeeEEeCCCCC
Q psy15024 58 TIGIIHQGAWCLDTLGNVNDGVVGLYPCHHTGGNQAWSLTKEGFIKH--HDTCLTIVNEMPG 117 (130)
Q Consensus 58 ~~G~i~~~~~CLD~~~~~~g~~v~l~~C~~~~~~Q~W~~t~~~~Ir~--~~~CLd~~~~~~g 117 (130)
.-|+|+.+..|||.. ..+. |.|..||+.+ +|.|.|..++.|+| +++||++.....+
T Consensus 498 ~~~eir~~~~cl~~~--~~~~-v~l~~C~~~~-~q~w~~~~~~~i~~~~sg~CL~~~~~~~~ 555 (578)
T KOG3736|consen 498 KQGEIRIGDLCLDVD--DAGK-VTLYDCHKMG-NQLWHYDKDGTLYHRNSGKCLEAAVDKNG 555 (578)
T ss_pred CCcceEECCEEeccc--cCCc-eEEEeccccc-ccceEEcCCCceEcCCCCccccccCCCCC
Confidence 347888888999975 2233 9999999976 99999998899998 8899999886666
No 13
>KOG3738|consensus
Probab=95.83 E-value=0.0094 Score=49.24 Aligned_cols=52 Identities=25% Similarity=0.415 Sum_probs=41.6
Q ss_pred cCceeeeccCCCCCCeEEEEecCCCCCceeEEEccCCeEee--cCeeeEEeCCCC
Q psy15024 64 QGAWCLDTLGNVNDGVVGLYPCHHTGGNQAWSLTKEGFIKH--HDTCLTIVNEMP 116 (130)
Q Consensus 64 ~~~~CLD~~~~~~g~~v~l~~C~~~~~~Q~W~~t~~~~Ir~--~~~CLd~~~~~~ 116 (130)
+..+||++....+|.+|.|.+|....+.|.|... ++-|.| +.+|||......
T Consensus 481 ~~elCL~v~~~~pg~~v~l~~C~~~e~~q~~v~~-~~~l~h~~s~KOGd~~~~g~ 534 (559)
T KOG3738|consen 481 HRELCLAVGSNTPGSPVALVPCGNNETKQRWVEL-GGHLLHAGSHLCLDNPLKGR 534 (559)
T ss_pred HHhhhheeecCCCCCeEEEEecCCCCCceEEEec-CCchhcccccceeccccCCC
Confidence 3678999988889999999999887788999765 445655 789999876443
No 14
>PF14200 RicinB_lectin_2: Ricin-type beta-trefoil lectin domain-like; PDB: 2X2S_C 2X2T_A 2VSE_B 2VSA_A 3EF2_A 2IHO_A 3HZB_H 1YBI_B 3PHZ_A 3NBE_A ....
Probab=95.27 E-value=0.029 Score=37.01 Aligned_cols=36 Identities=28% Similarity=0.411 Sum_probs=26.6
Q ss_pred eeec--CceeeeccCC--CCCCeEEEEec-CCCCCceeEEEc
Q psy15024 61 IIHQ--GAWCLDTLGN--VNDGVVGLYPC-HHTGGNQAWSLT 97 (130)
Q Consensus 61 ~i~~--~~~CLD~~~~--~~g~~v~l~~C-~~~~~~Q~W~~t 97 (130)
.|++ +++|||+.+. ..|..|.+++| ++ ..+|.|.+.
T Consensus 65 ~I~n~~s~~~Ldv~~~~~~~g~~v~~~~~~~~-~~~Q~W~l~ 105 (105)
T PF14200_consen 65 RIRNKNSGKVLDVAGGSTANGTNVQQWEYDNG-SDNQQWKLE 105 (105)
T ss_dssp EEEETSTTEEEEEGGGSSSTTEBEEEEE-STS-SGGGEEEEE
T ss_pred EEEECCCCcEEEECCCCCCCCCEEEEEeCCCC-CccCEEEeC
Confidence 4554 6899998654 46788999999 55 579999874
No 15
>PLN02899 alpha-galactosidase
Probab=94.90 E-value=0.024 Score=48.87 Aligned_cols=49 Identities=27% Similarity=0.545 Sum_probs=36.2
Q ss_pred CceeeeccCCCCC--C---eEEEEecCCCCCceeEEEccCCeEee--cCeeeEEeCC
Q psy15024 65 GAWCLDTLGNVND--G---VVGLYPCHHTGGNQAWSLTKEGFIKH--HDTCLTIVNE 114 (130)
Q Consensus 65 ~~~CLD~~~~~~g--~---~v~l~~C~~~~~~Q~W~~t~~~~Ir~--~~~CLd~~~~ 114 (130)
..+|||+.....- + .-.+.+|.. ..+|.|+++.+|.|.+ +++|.+|...
T Consensus 486 ~~~c~~~~~~~~~~~~~~~~~~fs~c~~-~~~q~w~l~~~g~l~~~~sglca~v~~~ 541 (633)
T PLN02899 486 GELCLDASPKQKRTSKDFRSGSFSPCRW-DANQMWELNNNGTLISSYSGLCATVNSV 541 (633)
T ss_pred cChhhccCCCCCcCHhHhhccccCCCCC-ChhhceeeCCCCCEecCccccceEeecc
Confidence 4589997654211 1 134689955 4799999999999887 8999999854
No 16
>KOG3737|consensus
Probab=89.13 E-value=0.42 Score=39.76 Aligned_cols=56 Identities=18% Similarity=0.272 Sum_probs=39.5
Q ss_pred eecCceeeeccCCCCCCeEEEEecCCCCCceeEEEccC-CeEee--cCeeeEEeCCCCCCeeEEe
Q psy15024 62 IHQGAWCLDTLGNVNDGVVGLYPCHHTGGNQAWSLTKE-GFIKH--HDTCLTIVNEMPGTGTHEE 123 (130)
Q Consensus 62 i~~~~~CLD~~~~~~g~~v~l~~C~~~~~~Q~W~~t~~-~~Ir~--~~~CLd~~~~~~g~~V~l~ 123 (130)
+-++..||.+. |..|.+..|.-..-+-.|.|.++ +.|.| +++||+++. .+..|.++
T Consensus 526 l~qge~CltAd----g~~i~~~hC~lgtv~g~WqY~~~tk~~~H~~~~kC~~~se--~~~qv~l~ 584 (603)
T KOG3737|consen 526 LMQGEQCLTAD----GSKIMITHCNLGTVKGEWQYFKNTKRFTHIPSGKCLDRSE--VLHQVFLS 584 (603)
T ss_pred hhccceeeecC----CceEEEEEeecccccCceehhhcchheeeccccccccccc--hhheeeec
Confidence 33467899854 46799999986555667988754 46766 899999876 34555554
No 17
>PF03498 CDtoxinA: Cytolethal distending toxin A/C family; InterPro: IPR003558 Escherichia coli, Haemophilus spp and Campylobacter spp. all produce a toxin that is seen to cause distension in certain cell lines [, ], which eventually disintegrate and die. This novel toxin, termed cytolethal distending toxin (cdt), has three subunits: A, B and C. Their sizes are approx. 27.7, 29.5 and 19.9kDa respectively [], and they appear to be entirely novel []. Further research on the complete toxin has revealed that it blocks the cell cycle at stage G2, through inactivation of the cyclin-dependent kinase Cdk1, and without induction of DNA breaks. This leads to multipolar abortive mitosis and micronucleation, associated with centrosomal amplification []. The roles of each subunit are unclear, but it is believed that they have separate roles in pathogenicity. This entry represents the A and C subunits.; GO: 0009405 pathogenesis; PDB: 2F2F_A 1SR4_C.
Probab=82.58 E-value=3 Score=29.86 Aligned_cols=47 Identities=32% Similarity=0.581 Sum_probs=29.4
Q ss_pred CceeeeccCCCCCCeEEEEecCCCCCceeEEE--ccCC--eEee--cCeeeEEeCC
Q psy15024 65 GAWCLDTLGNVNDGVVGLYPCHHTGGNQAWSL--TKEG--FIKH--HDTCLTIVNE 114 (130)
Q Consensus 65 ~~~CLD~~~~~~g~~v~l~~C~~~~~~Q~W~~--t~~~--~Ir~--~~~CLd~~~~ 114 (130)
++.||.+.+ .|.+....|....-.|.|++ +.+| +|++ .+.||.+...
T Consensus 61 ~~~CL~~~~---~G~~~~~~C~~~~~~q~F~iiPtttgAVQIks~~~~~Cl~~~~~ 113 (150)
T PF03498_consen 61 TGTCLAAYG---NGVFHYKSCDQDNLEQVFSIIPTTTGAVQIKSLSTGECLQTFNN 113 (150)
T ss_dssp TSEEEEEET---TCEEEE--TTTCHGHH-EEEEEBTTS-EEEEETTT--EEEE-ST
T ss_pred CCcceeecC---CCeEeecccCCCChhceEEEEEcCCCcEEEEecCCCceEEecCC
Confidence 556999854 25555555988756799987 4566 6887 7899998763
No 18
>PF03002 Somatostatin: Somatostatin/Cortistatin family; InterPro: IPR018142 Somatostatin inhibits the release of the pituitary growth hormone, somatotropin and inhibits the release of glucagon and insulin from the pancreas of fasted animals. Cortistatin is a cortical neuropeptide with neuronal depressant and sleep-modulating properties [].; GO: 0005179 hormone activity, 0005576 extracellular region
Probab=80.83 E-value=0.41 Score=22.06 Aligned_cols=10 Identities=40% Similarity=1.085 Sum_probs=8.5
Q ss_pred HHcCCcCchh
Q psy15024 31 ERLQCKPFKW 40 (130)
Q Consensus 31 ~~L~CksF~W 40 (130)
.+..||+|-|
T Consensus 3 ~k~~CknffW 12 (18)
T PF03002_consen 3 RKAGCKNFFW 12 (18)
T ss_pred ccccccceee
Confidence 5778999988
No 19
>cd08321 Pyrin_ASC-like Pyrin Death Domain found in ASC. Pyrin Death Domain found in ASC (Apoptosis-associated speck-like protein containing a CARD) and similar proteins. ASC is an adaptor molecule that functions in the assembly of the 'inflammasome', a multiprotein platform, which is responsible for caspase-1 activation and regulation of IL-1beta maturation. ASC contains two domains from the Death Domain (DD) superfamily, an N-terminal pyrin-like domain and a C-terminal Caspase activation and recruitment domain (CARD). Through these 2 domains, ASC serves as an adaptor for inflammasome integrity and oligomerizes to form supramolecular assemblies. Other members of this subfamily are associated with ATPase domains and their function remains unknown. In general, Pyrin is a subfamily of the DD superfamily and functions in several signaling pathways. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by se
Probab=54.26 E-value=3.5 Score=26.42 Aligned_cols=13 Identities=46% Similarity=0.795 Sum_probs=11.3
Q ss_pred cCchhhhhhhcCC
Q psy15024 36 KPFKWYLEHVYPE 48 (130)
Q Consensus 36 ksF~WyL~nV~pe 48 (130)
+.|+|+|.++.++
T Consensus 17 kkFK~~L~~~~~~ 29 (82)
T cd08321 17 KKFKWKLRDIPLE 29 (82)
T ss_pred HHHHHHHhhhhhc
Confidence 6799999998776
No 20
>smart00446 LRRcap occurring C-terminal to leucine-rich repeats. A motif occurring C-terminal to leucine-rich repeats in "sds22-like" and "typical" LRR-containing proteins.
Probab=28.78 E-value=48 Score=16.65 Aligned_cols=21 Identities=10% Similarity=0.256 Sum_probs=17.2
Q ss_pred cchhHHHhhhCCCCCCCCCCC
Q psy15024 2 DNYKHYYYAEVPLAKTIPFGD 22 (130)
Q Consensus 2 Deyk~~~y~~~P~~~~~~~Gd 22 (130)
..|.++++..-|.++..|...
T Consensus 2 ~~YR~~Vi~~LPqL~~LD~~~ 22 (26)
T smart00446 2 AHYREKVIRLLPQLRKLDXXX 22 (26)
T ss_pred ccHHHHHHHHCCccceecccc
Confidence 469999999999988887643
No 21
>PF10461 Peptidase_S68: Peptidase S68; InterPro: IPR019502 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry contains serine peptidases belonging to MEROPS peptidase family S68 (PIDD auto-processing protein, clan S-). These proteins are known as Pidd (short for p53-induced protein with a death domain) proteins. Pidd forms a complex with Raidd and procaspase-2 that is known as the 'Piddosome'. The Piddosome forms when DNA damage occurs and either activates NF-kappaB, leading to cell survival, or caspase-2, which leads to apoptosis.
Probab=27.87 E-value=15 Score=19.81 Aligned_cols=7 Identities=43% Similarity=1.303 Sum_probs=5.4
Q ss_pred Cchhhhh
Q psy15024 37 PFKWYLE 43 (130)
Q Consensus 37 sF~WyL~ 43 (130)
-|+|||-
T Consensus 25 hFSWFlv 31 (35)
T PF10461_consen 25 HFSWFLV 31 (35)
T ss_pred ccEEEEE
Confidence 3999983
No 22
>cd05896 Ig1_IL1RAPL-1_like First immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1). Ig1_ IL1RAPL-1_like: domain similar to the first immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1). IL-1 alpha and IL-1 beta are cytokines which participates in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of
Probab=26.35 E-value=21 Score=24.05 Aligned_cols=17 Identities=29% Similarity=0.655 Sum_probs=14.5
Q ss_pred HcCCcCchhhhhhhcCC
Q psy15024 32 RLQCKPFKWYLEHVYPE 48 (130)
Q Consensus 32 ~L~CksF~WyL~nV~pe 48 (130)
+|+|--|.||+..-|+.
T Consensus 19 ~l~C~~~~~~~~~~~~~ 35 (104)
T cd05896 19 RIKCALFYGYIRTNYSM 35 (104)
T ss_pred EEECCCccccccccccc
Confidence 68899999999877774
No 23
>PF05595 DUF771: Domain of unknown function (DUF771) ; InterPro: IPR008489 This entry is represented by Bacteriophage bIL285, Orf7. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry consists of uncharacterised ORFs found in Bacteriophage and Lactococcus lactis.
Probab=26.01 E-value=43 Score=21.64 Aligned_cols=26 Identities=31% Similarity=0.413 Sum_probs=21.2
Q ss_pred CCchHHHHHHHHcCCcCchhhhhhhcC
Q psy15024 21 GDISDRVALRERLQCKPFKWYLEHVYP 47 (130)
Q Consensus 21 Gdis~r~~LR~~L~CksF~WyL~nV~p 47 (130)
|..=...+|++++ |+|=.|..+||.-
T Consensus 21 ~~~W~~~dl~k~~-~~s~~wi~~~il~ 46 (91)
T PF05595_consen 21 GKWWDMKDLRKRT-GKSREWIKENILY 46 (91)
T ss_pred cceeeHHHHHHHH-CCCHHHHHHHccc
Confidence 4444678999999 6999999999964
No 24
>PF07598 DUF1561: Protein of unknown function (DUF1561); InterPro: IPR011455 This is a family of paralogous proteins in Leptospira interrogans.
Probab=25.16 E-value=76 Score=27.79 Aligned_cols=33 Identities=27% Similarity=0.435 Sum_probs=24.7
Q ss_pred CceeeeccCCC-----CCCeEEEEecCCCCCceeEEEc
Q psy15024 65 GAWCLDTLGNV-----NDGVVGLYPCHHTGGNQAWSLT 97 (130)
Q Consensus 65 ~~~CLD~~~~~-----~g~~v~l~~C~~~~~~Q~W~~t 97 (130)
.=+|+.++... .-..|.|.||.-...+|.|.+-
T Consensus 90 tWLCmTAP~sVtk~~~~WdYl~LRPCvINDpnQrWIIK 127 (632)
T PF07598_consen 90 TWLCMTAPESVTKSTANWDYLLLRPCVINDPNQRWIIK 127 (632)
T ss_pred EEEEEecCchhcccccccceEEEeeeeECCCCceEEEe
Confidence 44899987642 3445999999877789999863
No 25
>cd08684 C2A_Tac2-N C2 domain first repeat found in Tac2-N (Tandem C2 protein in Nucleus). Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphos
Probab=24.32 E-value=24 Score=23.56 Aligned_cols=13 Identities=31% Similarity=0.672 Sum_probs=10.5
Q ss_pred cCCcCchhhhhhh
Q psy15024 33 LQCKPFKWYLEHV 45 (130)
Q Consensus 33 L~CksF~WyL~nV 45 (130)
++||.|.||-..+
T Consensus 6 ~~c~d~s~~~~~~ 18 (103)
T cd08684 6 LKCKDLSWPSSCG 18 (103)
T ss_pred EEecccccccccC
Confidence 6899999996544
No 26
>TIGR01319 glmL_fam conserved hypothetical protein. This small family includes, so far, an uncharacterized protein from E. coli O157:H7 and GlmL from Clostridium tetanomorphum and Clostridium cochlearium. GlmL is located between the genes for the two subunits, epsilon (GlmE) and sigma (GlmS), of the coenzyme-B12-dependent glutamate mutase (methylaspartate mutase), the first enzyme in a pathway of glutamate fermentation. Members shows significant sequence similarity to the hydantoinase branch of the hydantoinase/oxoprolinase family (pfam01968).
Probab=23.51 E-value=51 Score=27.95 Aligned_cols=37 Identities=16% Similarity=0.219 Sum_probs=29.5
Q ss_pred CCCCCCchHHHHHHHHcCCcCchhh-hhhhcCCCCCCC
Q psy15024 17 TIPFGDISDRVALRERLQCKPFKWY-LEHVYPELQVPS 53 (130)
Q Consensus 17 ~~~~Gdis~r~~LR~~L~CksF~Wy-L~nV~pel~~p~ 53 (130)
-+-.|+.+.+-++++-|.-++-.-| .+||+|++..+.
T Consensus 154 IIyAGN~~a~~~V~~il~~~~~~~~i~eNV~P~i~~ln 191 (463)
T TIGR01319 154 IIVAGNKDIQDEVQEIFDHADIFYRITDNVLPDLDHLN 191 (463)
T ss_pred EEEeCCHHHHHHHHHHHhcCCceEEecCCcCCCCCCcC
Confidence 4456999999999999997765544 499999987643
Done!