RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy15024
(130 letters)
>2ffu_A Ppgalnact-2, polypeptide N-acetylgalactosaminyltransferase 2,
protein-UDP; ppgalnact, mucin, glycosyltransferase; HET:
UDP; 1.64A {Homo sapiens} PDB: 2ffv_A*
Length = 501
Score = 137 bits (346), Expect = 9e-40
Identities = 69/118 (58%), Positives = 89/118 (75%)
Query: 1 MDNYKHYYYAEVPLAKTIPFGDISDRVALRERLQCKPFKWYLEHVYPELQVPSSSQITIG 60
MD YK++YYA VP A+ +P+G+I R+ LR++L CKPFKWYLE+VYPEL+VP I G
Sbjct: 319 MDEYKNFYYAAVPSARNVPYGNIQSRLELRKKLSCKPFKWYLENVYPELRVPDHQDIAFG 378
Query: 61 IIHQGAWCLDTLGNVNDGVVGLYPCHHTGGNQAWSLTKEGFIKHHDTCLTIVNEMPGT 118
+ QG CLDTLG+ DGVVG+Y CH+ GGNQ W+LTKE +KH D CLT+V+ PG+
Sbjct: 379 ALQQGTNCLDTLGHFADGVVGVYECHNAGGNQEWALTKEKSVKHMDLCLTVVDRAPGS 436
>1xhb_A Polypeptide N-acetylgalactosaminyltransferase 1;
glycosyltransferase-A (GT-A); HET: NAG BMA; 2.50A {Mus
musculus} SCOP: b.42.2.1 c.68.1.17
Length = 472
Score = 126 bits (316), Expect = 2e-35
Identities = 44/111 (39%), Positives = 63/111 (56%), Gaps = 1/111 (0%)
Query: 1 MDNYKHYYYAEVPLAKTIPFGDISDRVALRERLQCKPFKWYLEHVYPELQVPSSSQITIG 60
MD +K+++Y P + +GDIS R+ LR +LQCKPF WYLE++YP+ Q+P
Sbjct: 287 MDEFKNFFYIISPGVTKVDYGDISSRLGLRRKLQCKPFSWYLENIYPDSQIPRHYFSLGE 346
Query: 61 IIHQGA-WCLDTLGNVNDGVVGLYPCHHTGGNQAWSLTKEGFIKHHDTCLT 110
I + CLD + + VG++ CH GGNQ +S T I+ D CL
Sbjct: 347 IRNVETNQCLDNMARKENEKVGIFNCHGMGGNQVFSYTANKEIRTDDLCLD 397
>2d7i_A Polypeptide N-acetylgalactosaminyltransferase 10; beta trefoil,
rossmann fold; HET: NAG NGA UDP; 2.50A {Homo sapiens}
PDB: 2d7r_A*
Length = 570
Score = 95.3 bits (236), Expect = 4e-24
Identities = 30/122 (24%), Positives = 43/122 (35%), Gaps = 12/122 (9%)
Query: 1 MDNYKHYYYAEVPLAKTIPFGDISDRVALRERLQCKPFKWYLEHVYPELQVPSS----SQ 56
MD Y Y Y P + + GD++ + LR L CK FKW++ + +L
Sbjct: 365 MDEYAEYIYQRRPEYRHLSAGDVAVQKKLRSSLNCKSFKWFMTKIAWDLPKFYPPVEPPA 424
Query: 57 ITIGIIHQGA--WCLDTLGNVNDGVVGLYPCHHTGGN------QAWSLTKEGFIKHHDTC 108
G I C DT + L C G Q ++ T I+ D
Sbjct: 425 AAWGEIRNVGTGLCADTKHGALGSPLRLEGCVRGRGEAAWNNMQVFTFTWREDIRPGDPQ 484
Query: 109 LT 110
T
Sbjct: 485 HT 486
Score = 46.8 bits (110), Expect = 4e-07
Identities = 15/54 (27%), Positives = 22/54 (40%), Gaps = 4/54 (7%)
Query: 60 GIIHQGAWCLDTLGNVNDGVVGLYPCHHTGGNQAWSLTKEGFIKHHDT--CLTI 111
H +C D + + V LY CH GNQ W K+ + H + C+
Sbjct: 482 DPQHTKKFCFDAISH--TSPVTLYDCHSMKGNQLWKYRKDKTLYHPVSGSCMDC 533
>2vlc_A Cinnamomin, type 2 ribosome-inactivating protein cinnamomin III;
ribosome inhibiting proteins, toxin, hydrolase, plant
defense; HET: AS5 BMA XYP XYS; 2.95A {Cinnamomum
camphora}
Length = 570
Score = 53.3 bits (127), Expect = 2e-09
Identities = 19/75 (25%), Positives = 32/75 (42%), Gaps = 3/75 (4%)
Query: 50 QVPSSSQITIGIIHQGAWCLD-TLGNVNDGV-VGLYPCHHTGG-NQAWSLTKEGFIKHHD 106
+ + T+ I + C+ G N+G + L+PC NQ W+L ++G I+ +
Sbjct: 309 DTCADPEPTVRISGRNGLCVRVRDGKYNNGNPIQLWPCKQNSDVNQLWTLRRDGTIRSNG 368
Query: 107 TCLTIVNEMPGTGTH 121
CLT G
Sbjct: 369 KCLTTNGYSAGDYVM 383
Score = 38.7 bits (89), Expect = 2e-04
Identities = 15/72 (20%), Positives = 27/72 (37%), Gaps = 8/72 (11%)
Query: 52 PSSSQITIGIIHQGAWCLDTLGNVNDGVVGLYPCHHTGGNQAWSLTKEGFIKHH---DTC 108
++ I+ C+ N + + C + Q W+L +G I+ H D C
Sbjct: 442 NNTEPFVTSIVGFNDLCMQA----NGDAMWVVECESSKAEQKWALYPDGSIRPHQDRDRC 497
Query: 109 LTIVNEMPGTGT 120
LT + G+
Sbjct: 498 LT-STDNHSQGS 508
Score = 34.8 bits (79), Expect = 0.004
Identities = 13/54 (24%), Positives = 17/54 (31%), Gaps = 1/54 (1%)
Query: 68 CLDTLGNVNDGVVGLYPCH-HTGGNQAWSLTKEGFIKHHDTCLTIVNEMPGTGT 120
CL T G V +Y C W G I + + L + E T
Sbjct: 370 CLTTNGYSAGDYVMIYDCRTPVTAASIWQFWANGTIINPQSALVLSAESGNPRT 423
Score = 34.1 bits (77), Expect = 0.009
Identities = 9/47 (19%), Positives = 18/47 (38%), Gaps = 3/47 (6%)
Query: 68 CLDTLGNVNDG-VVGLYPCHHTGGNQAWSLTKEGFIKHHDT--CLTI 111
CL + N + G ++ + C Q W +G I + + +
Sbjct: 497 CLTSTDNHSQGSIIIISSCSPGSEGQRWVFMNDGTILNLKNGLVMDV 543
Score = 28.3 bits (62), Expect = 0.69
Identities = 7/57 (12%), Positives = 9/57 (15%), Gaps = 1/57 (1%)
Query: 64 QGAWCLDTLGNVNDGVVGLYPCHHTGGNQAWSLTKEGFIKHHDTCLTIVNEMPGTGT 120
Q A L + + Q W M G
Sbjct: 409 QSALVLSAESGNPRTTLTVQAD-IYASRQGWLAGNNTEPFVTSIVGFNDLCMQANGD 464
>1m2t_B Mistletoe lectin I B chain; ribosome inactivation, ribosome
inhibitor, hydrolase; HET: NAG FUC ADE; 1.89A {Viscum
album} SCOP: b.42.2.1 b.42.2.1 PDB: 2r9k_B* 3d7w_B*
3cef_B* 1sz6_B* 1pum_B* 1puu_B* 2rg9_B* 3o5w_B* 1onk_B*
1oql_B* 1tfm_B* 1pc8_B* 1yf8_B* 1ce7_B* 2mll_B*
Length = 263
Score = 51.7 bits (123), Expect = 5e-09
Identities = 17/75 (22%), Positives = 34/75 (45%), Gaps = 3/75 (4%)
Query: 50 QVPSSSQITIGIIHQGAWCLDTLG-NVNDGV-VGLYPCHHTGG-NQAWSLTKEGFIKHHD 106
++S+ + I+ + +D + +DG + L+P NQ W++ K+G I+ +
Sbjct: 3 VTCTASEPIVRIVGRNGMTVDVRDDDFHDGNQIQLWPSKSNNDPNQLWTIKKDGTIRSNG 62
Query: 107 TCLTIVNEMPGTGTH 121
+CLT G
Sbjct: 63 SCLTTYGYTAGVYVM 77
Score = 36.3 bits (83), Expect = 0.001
Identities = 10/44 (22%), Positives = 15/44 (34%), Gaps = 2/44 (4%)
Query: 68 CLDTLGNVNDGVVGLYPCHHTGGNQAWSLTKEGFIKHHDT--CL 109
CL + V+ + C Q W T EG I + +
Sbjct: 191 CLTNGRDSISTVINIVSCSAGSSGQRWVFTNEGAILNLKNGLAM 234
Score = 35.2 bits (80), Expect = 0.003
Identities = 14/62 (22%), Positives = 21/62 (33%), Gaps = 1/62 (1%)
Query: 60 GIIHQGAWCLDTLGNVNDGVVGLYPCHHTG-GNQAWSLTKEGFIKHHDTCLTIVNEMPGT 118
G I CL T G V ++ C+ W + G I + + L +
Sbjct: 56 GTIRSNGSCLTTYGYTAGVYVMIFDCNTAVREATIWQIWGNGTIINPRSNLVLAASSGIK 115
Query: 119 GT 120
GT
Sbjct: 116 GT 117
Score = 32.5 bits (73), Expect = 0.024
Identities = 14/59 (23%), Positives = 21/59 (35%), Gaps = 7/59 (11%)
Query: 63 HQGAWCLDTLGNVNDGVVGLYPCHHTGGNQAWSLTKEGFIKHHDT---CLTIVNEMPGT 118
C++ G V + C NQ W+L +G I+ CLT + T
Sbjct: 147 GFRDLCME----SAGGSVYVETCTAGQENQRWALYGDGSIRPKQLQSQCLTNGRDSIST 201
>2aai_B Ricin (B chain); glycosidase; HET: GAL BGC NDG NAG BMA MAN; 2.50A
{Ricinus communis} SCOP: b.42.2.1 b.42.2.1 PDB: 3rti_B*
3rtj_B* 1rzo_B*
Length = 262
Score = 51.2 bits (122), Expect = 7e-09
Identities = 18/75 (24%), Positives = 32/75 (42%), Gaps = 3/75 (4%)
Query: 50 QVPSSSQITIGIIHQGAWCLDTLG-NVNDGV-VGLYPCHHTGG-NQAWSLTKEGFIKHHD 106
V + + I+ + C+D ++G + L+PC NQ W+L ++ I+ +
Sbjct: 2 DVCMDPEPIVRIVGRNGLCVDVRDGRFHNGNAIQLWPCKSNTDANQLWTLKRDNTIRSNG 61
Query: 107 TCLTIVNEMPGTGTH 121
CLT PG
Sbjct: 62 KCLTTYGYSPGVYVM 76
Score = 40.0 bits (93), Expect = 7e-05
Identities = 11/45 (24%), Positives = 18/45 (40%), Gaps = 2/45 (4%)
Query: 67 WCLDTLGNVNDGVVGLYPCHHTGGNQAWSLTKEGFIKHHDT--CL 109
CL + N+ + VV + C Q W +G I + + L
Sbjct: 189 NCLTSDSNIRETVVKILSCGPASSGQRWMFKNDGTILNLYSGLVL 233
Score = 37.7 bits (87), Expect = 4e-04
Identities = 13/54 (24%), Positives = 19/54 (35%), Gaps = 3/54 (5%)
Query: 68 CLDTLGNVNDGVVGLYPCHHTG-GNQAWSLTKEGFIKHHDT--CLTIVNEMPGT 118
CL T G V +Y C+ W + G I + + L + GT
Sbjct: 63 CLTTYGYSPGVYVMIYDCNTAATDATRWQIWDNGTIINPRSSLVLAATSGNSGT 116
Score = 36.6 bits (84), Expect = 8e-04
Identities = 16/59 (27%), Positives = 23/59 (38%), Gaps = 7/59 (11%)
Query: 63 HQGAWCLDTLGNVNDGVVGLYPCHHTGGNQAWSLTKEGFIK---HHDTCLTIVNEMPGT 118
CL N G V + C Q W+L +G I+ + D CLT + + T
Sbjct: 146 GLYGLCLQ----ANSGQVWIEDCSSEKAEQQWALYADGSIRPQQNRDNCLTSDSNIRET 200
Score = 31.2 bits (70), Expect = 0.074
Identities = 4/41 (9%), Positives = 9/41 (21%), Gaps = 1/41 (2%)
Query: 68 CLDTLGNVNDGVVGLYPCHHTGGNQAWSLTKEGFIKHHDTC 108
L + + + + +Q W T
Sbjct: 106 VLAATSGNSGTTLTVQTNIY-AVSQGWLPTNNTQPFVTTIV 145
>1ggp_B TKL-1, protein (lectin 1 B chain); sugar binding protein; 2.70A
{Trichosanthes kirilowii} SCOP: b.42.2.1 b.42.2.1
Length = 254
Score = 51.0 bits (121), Expect = 9e-09
Identities = 17/55 (30%), Positives = 26/55 (47%), Gaps = 2/55 (3%)
Query: 58 TIGIIHQGAWCLDTLGNVNDGV-VGLYPCHHTGGNQAWSLTKEGFIKHHDTCLTI 111
T+ I + +C D G +G + L C NQ W+L +E I+ + CLT
Sbjct: 5 TVRIAGRDGFCADVNGEGQNGAAIILKKCA-ENDNQLWTLKREATIRSNGGCLTT 58
Score = 33.2 bits (75), Expect = 0.012
Identities = 12/62 (19%), Positives = 19/62 (30%), Gaps = 2/62 (3%)
Query: 60 GIIHQGAWCLDTLGNVNDGVVGLYPCHHTGG-NQAWSLTKEGFIKHHDTCLTIVNEMPGT 118
I CL T G+Y C AW + G I + + L + + +
Sbjct: 47 ATIRSNGGCLTTAA-AEQAKAGIYDCTQATAELSAWEIADNGTIINPASSLVLSSGAANS 105
Query: 119 GT 120
Sbjct: 106 LL 107
Score = 32.9 bits (74), Expect = 0.019
Identities = 8/44 (18%), Positives = 14/44 (31%), Gaps = 3/44 (6%)
Query: 68 CLDTLGNVNDGVVGLYPCHHTGGNQAWSLTKEGFIKHHDT--CL 109
CL + + + L C +Q W +G I +
Sbjct: 183 CLTSAADAGPKTILLALC-SGPASQRWVFDDDGSILSLYDDKQM 225
>1abr_B Abrin-A; glycosidase/carbohydrate complex, lectin, lectin
(agglutinin), glycoprotein, plant SEED protein, plant
toxin; HET: NDG NGZ MAN BMA BGC; 2.14A {Abrus
precatorius} SCOP: b.42.2.1 b.42.2.1 PDB: 2zr1_B*
2q3n_B*
Length = 267
Score = 50.1 bits (119), Expect = 1e-08
Identities = 17/72 (23%), Positives = 31/72 (43%), Gaps = 3/72 (4%)
Query: 50 QVPSSSQITIGIIHQGAWCLDTLG-NVNDGV-VGLYPCH-HTGGNQAWSLTKEGFIKHHD 106
S + T+ I + C+D ++G + ++ C NQ W+L + I+ +
Sbjct: 7 ICSSRYEPTVRIGGRDGMCVDVYDNGYHNGNRIIMWKCKDRLEENQLWTLKSDKTIRSNG 66
Query: 107 TCLTIVNEMPGT 118
CLT PG+
Sbjct: 67 KCLTTYGYAPGS 78
Score = 37.0 bits (85), Expect = 7e-04
Identities = 10/64 (15%), Positives = 21/64 (32%), Gaps = 2/64 (3%)
Query: 50 QVPSSSQITIGIIHQGAWCLDTLGNVNDGVVGLYPCHHTGGNQAWSLTKEGFIKHHDT-- 107
Q + +I + CL + + + L C + +Q W +G I
Sbjct: 177 QWALYTDGSIRSVQNTNNCLTSKDHKQGSTILLMGCSNGWASQRWVFKNDGSIYSLYDDM 236
Query: 108 CLTI 111
+ +
Sbjct: 237 VMDV 240
Score = 36.7 bits (84), Expect = 8e-04
Identities = 14/62 (22%), Positives = 19/62 (30%), Gaps = 1/62 (1%)
Query: 60 GIIHQGAWCLDTLGNVNDGVVGLYPCHHTGGNQ-AWSLTKEGFIKHHDTCLTIVNEMPGT 118
I CL T G V +Y C W + G I + + L + E
Sbjct: 60 KTIRSNGKCLTTYGYAPGSYVMIYDCTSAVAEATYWEIWDNGTIINPKSALVLSAESSSM 119
Query: 119 GT 120
G
Sbjct: 120 GG 121
Score = 30.1 bits (67), Expect = 0.16
Identities = 13/69 (18%), Positives = 24/69 (34%), Gaps = 3/69 (4%)
Query: 53 SSSQITIGIIHQGAWCLDTLGNVNDGVVGLYPCHHTGGNQAWSLTKEGFI---KHHDTCL 109
+ T + + D V + C Q W+L +G I ++ + CL
Sbjct: 137 RTGNNTSPFVTSISGYSDLCMQAQGSNVWMADCDSNKKEQQWALYTDGSIRSVQNTNNCL 196
Query: 110 TIVNEMPGT 118
T + G+
Sbjct: 197 TSKDHKQGS 205
Score = 25.9 bits (56), Expect = 4.2
Identities = 4/41 (9%), Positives = 8/41 (19%), Gaps = 1/41 (2%)
Query: 68 CLDTLGNVNDGVVGLYPCHHTGGNQAWSLTKEGFIKHHDTC 108
L + G + + + Q W
Sbjct: 111 VLSAESSSMGGTLTVQTNEY-LMRQGWRTGNNTSPFVTSIS 150
>1vcl_A Hemolytic lectin CEL-III; hemolysis, hemagglutination,
pore-forming, calcium, toxin; HET: BTB; 1.70A {Cucumaria
echinata} SCOP: b.42.2.1 b.42.2.1 d.281.1.1 PDB: 2z48_A*
2z49_A*
Length = 432
Score = 47.4 bits (112), Expect = 2e-07
Identities = 15/79 (18%), Positives = 29/79 (36%), Gaps = 5/79 (6%)
Query: 50 QVPSSSQITIGIIH--QGAWCLDTLGNVNDGVVGLYPCHHTGGNQAWSLTKEGFIKHHDT 107
+V ++ + IG + + C+D +GN G + Y C +Q + +G I++
Sbjct: 1 EVLCTNPLDIGELRSFKSKQCVDIVGNQGSGNIATYDC-DGLSDQQIIICGDGTIRNEAR 59
Query: 108 --CLTIVNEMPGTGTHEEV 124
C T
Sbjct: 60 NYCFTPDGSGNANVMSSPC 78
Score = 44.4 bits (104), Expect = 2e-06
Identities = 17/89 (19%), Positives = 29/89 (32%), Gaps = 10/89 (11%)
Query: 39 KWYLEHVYPELQVPSSSQITIGIIHQGA-WCLDTLGNVNDGVVGLYPCHHTGGNQAWSLT 97
+W Q+ II+ + CLD G+ G +G+Y C +Q + +
Sbjct: 89 RWRQGRRKTFTDNGGIEQVATEIINLASGKCLDIEGSDGTGDIGVYDC-QNLDDQYFYVR 147
Query: 98 KEGFI--------KHHDTCLTIVNEMPGT 118
G + D CL +
Sbjct: 148 SRGPELFYGRLRNEKSDLCLDVEGSDGKG 176
Score = 44.0 bits (103), Expect = 3e-06
Identities = 13/56 (23%), Positives = 21/56 (37%), Gaps = 3/56 (5%)
Query: 68 CLDTLGNVNDGVVGLYPCHHTGGNQAWSLTKEGFIKHHDT--CLTIVNEMPGTGTH 121
CLD G+ G V +Y C +Q + + G I + + CL +
Sbjct: 166 CLDVEGSDGKGNVLMYSCED-NLDQWFRYYENGEIVNAKSGMCLDVEGSDGSGNVG 220
Score = 34.7 bits (79), Expect = 0.005
Identities = 13/50 (26%), Positives = 20/50 (40%), Gaps = 4/50 (8%)
Query: 68 CLDTLGNVNDGVVGLYPCHHTGGNQAWSLTKEGFIKHHDTCLTIVNEMPG 117
CLD G+ G VG+Y C +Q WS + + +N+
Sbjct: 207 CLDVEGSDGSGNVGIYRC-DDLRDQMWSRPNAY---CNGDYCSFLNKESN 252
Score = 34.3 bits (78), Expect = 0.006
Identities = 11/53 (20%), Positives = 20/53 (37%), Gaps = 1/53 (1%)
Query: 68 CLDTLGNVNDGVVGLYPCHHTGGNQAWSLTKEGFIKHHDTCLTIVNEMPGTGT 120
CLD G+ G VG + C +Q + + + T + + G +
Sbjct: 254 CLDVSGDQGTGDVGTWQC-DGLPDQRFKWVFDDWEVPTATWNMVGCDQNGKVS 305
>3c9z_A Agglutinin II, SNA-II; beta-trefoil, ricin-B domain, glycosylation,
glycoprotein, L sugar binding protein, plant protein;
HET: NAG FUC SO4; 1.35A {Sambucus nigra} PDB: 3ca0_A*
3ca1_A* 3ca3_A* 3ca4_A* 3ca5_A* 3ca6_A* 3cah_A* 1hwm_B*
1hwn_B* 1hwo_B* 1hwp_B*
Length = 258
Score = 46.1 bits (109), Expect = 4e-07
Identities = 17/63 (26%), Positives = 27/63 (42%), Gaps = 3/63 (4%)
Query: 58 TIGIIHQGAWCLDTLG-NVNDGV-VGLYPCHHTGGNQAWSLTKEGFIKHHDTCLTIVNEM 115
T I+ + C+D DG + L+PC T NQ W+ + I+ C+T
Sbjct: 4 TRNIVGRDGLCVDVRNGYDTDGTPLQLWPCG-TQRNQRWTFDSDDTIRSMGKCMTANGLN 62
Query: 116 PGT 118
G+
Sbjct: 63 NGS 65
Score = 35.0 bits (80), Expect = 0.004
Identities = 12/55 (21%), Positives = 20/55 (36%), Gaps = 3/55 (5%)
Query: 67 WCLDTLGNVNDGVVGLYPCHHTGGNQAWSLTKEGFIK-HHDTCLTIVNEMPGTGT 120
CL + G N V + C T Q W+L + I+ + L + +
Sbjct: 142 MCLQSNGENNG--VWMEDCEATSLQQQWALYGDRTIRVNSTRGLCVTTNGYNSKD 194
Score = 31.1 bits (70), Expect = 0.067
Identities = 5/56 (8%), Positives = 15/56 (26%), Gaps = 3/56 (5%)
Query: 68 CLDTLGNVNDGVVGLYPCHHTGGNQAWSLTKEGFIKHH--DTCLTIVNEMPGTGTH 121
+ + ++ L + +Q W++T + + G
Sbjct: 98 VMTAPRAASRTILLLEDNIY-AASQGWTVTNNVKPIVASIVGYKEMCLQSNGENNG 152
>3a07_A Actinohivin; carbohydrate-binding module family 13, antiviral
protein, LE; 1.19A {Actinomycete}
Length = 118
Score = 42.4 bits (100), Expect = 2e-06
Identities = 13/49 (26%), Positives = 20/49 (40%), Gaps = 6/49 (12%)
Query: 67 WCLDTLGNVNDGVVGLYPCHHTGGNQAWSLTKEGFIKHHDT--CLTIVN 113
LD+ N G V P + G Q W+ +G +++ T CL
Sbjct: 16 RLLDSNYN---GNVYTLPAN-GGNYQRWTGPGDGTVRNAQTGRCLDSNY 60
Score = 39.0 bits (91), Expect = 5e-05
Identities = 14/45 (31%), Positives = 21/45 (46%), Gaps = 6/45 (13%)
Query: 68 CLDTLGNVNDGVVGLYPCHHTGGNQAWSLTKEGFIKHHDT--CLT 110
CLD+ + G V PC+ G Q W G+I++ +T L
Sbjct: 55 CLDSNYD---GAVYTLPCN-GGSYQKWLFYSNGYIQNVETGRVLD 95
>1xez_A Hemolysin, cytolysin; pore-forming toxin, Pro-toxin, water- soluble
monomer, beta-prism, beta-trefoil; HET: BOG; 2.30A
{Vibrio cholerae} PDB: 3o44_A
Length = 721
Score = 42.2 bits (98), Expect = 1e-05
Identities = 8/49 (16%), Positives = 16/49 (32%), Gaps = 6/49 (12%)
Query: 68 CLDTLGNVNDGVVGLYPCHHTGGNQAWSLTKEG-FIKHHDT--CLTIVN 113
C+ G + C Q++ + G ++ +T CL
Sbjct: 477 CIQVDA---QGRLTANMCDSQQSAQSFIYDQLGRYVSASNTKLCLDGAA 522
>1knl_A Endo-1,4-beta-xylanase A; carbohydrate binding module, CBM13 xylan
binding domain, LEC ricin B-like, beta-trefoil fold,
hydrolase; 1.20A {Streptomyces lividans} SCOP: b.42.2.1
PDB: 1knm_A* 1mc9_A*
Length = 130
Score = 39.6 bits (93), Expect = 3e-05
Identities = 18/55 (32%), Positives = 28/55 (50%), Gaps = 4/55 (7%)
Query: 67 WCLDTLG-NVNDGV-VGLYPCHHTGGNQAWSLTKEGFIKHH-DTCLTIVNEMPGT 118
CLD + +DG + L+ CH +G NQ W+ T G ++ + D CL G+
Sbjct: 16 RCLDVPDASTSDGTQLQLWDCH-SGTNQQWAATDAGELRVYGDKCLDAAGTSNGS 69
Score = 38.8 bits (91), Expect = 6e-05
Identities = 19/55 (34%), Positives = 22/55 (40%), Gaps = 3/55 (5%)
Query: 68 CLDTLGNVNDGVVGLYPCHHTGGNQAWSLTKEGFI--KHHDTCLTIVNEMPGTGT 120
CLD G N V +Y C G NQ W L +G + CL V GT
Sbjct: 59 CLDAAGTSNGSKVQIYSC-WGGDNQKWRLNSDGSVVGVQSGLCLDAVGNGTANGT 112
Score = 30.4 bits (69), Expect = 0.088
Identities = 14/32 (43%), Positives = 19/32 (59%), Gaps = 3/32 (9%)
Query: 68 CLDTLGNV--NDGVVGLYPCHHTGGNQAWSLT 97
CLD +GN N ++ LY C + G NQ W+ T
Sbjct: 100 CLDAVGNGTANGTLIQLYTCSN-GSNQRWTRT 130
>1dqg_A Mannose receptor; beta trefoil, multilectin receptor, pituitary
hormones, sulfated carbohydrate, sugar binding protein;
1.70A {Mus musculus} SCOP: b.42.2.2 PDB: 1dqo_A* 1fwu_A*
1fwv_A*
Length = 135
Score = 33.9 bits (77), Expect = 0.004
Identities = 10/61 (16%), Positives = 21/61 (34%), Gaps = 6/61 (9%)
Query: 61 IIHQGA-WCLDTLGNVNDGVVGLYPCHHTGGNQAWSLTKEGFIKHHDT--CLTIVNEMPG 117
I ++ C+D L + V C+ +Q + + I CL + ++
Sbjct: 8 IYNEDHKRCVDAL---SAISVQTATCNPEAESQKFRWVSDSQIMSVAFKLCLGVPSKTDW 64
Query: 118 T 118
Sbjct: 65 A 65
Score = 29.3 bits (65), Expect = 0.19
Identities = 10/46 (21%), Positives = 12/46 (26%)
Query: 68 CLDTLGNVNDGVVGLYPCHHTGGNQAWSLTKEGFIKHHDTCLTIVN 113
CL + V LY C Q W + T L
Sbjct: 55 CLGVPSKTDWASVTLYACDSKSEYQKWECKNDTLFGIKGTELYFNY 100
>3a21_A Putative secreted alpha-galactosidase; beta-alpha-barrel, greek KEY
motif, beta-jellyroll, beta-TRE hydrolase; HET: GOL 1PG
EPE; 1.51A {Streptomyces avermitilis} PDB: 3a22_A*
3a23_A*
Length = 614
Score = 34.4 bits (78), Expect = 0.006
Identities = 17/74 (22%), Positives = 26/74 (35%), Gaps = 4/74 (5%)
Query: 50 QVPSSSQITIGIIHQGAWCLDTLGN--VNDGVVGLYPCHHTGGNQAWSLTKEGFIKHHDT 107
+ + + Q C D N N L+ C+ G NQ+W+ T + +
Sbjct: 481 RPLPGTNGALVTGKQSGRCADIYNNTITNGTQAELWDCN-GGPNQSWTYTSRKELVLYGN 539
Query: 108 -CLTIVNEMPGTGT 120
CL N GT
Sbjct: 540 KCLDAYNLGTTNGT 553
Score = 30.5 bits (68), Expect = 0.12
Identities = 12/32 (37%), Positives = 16/32 (50%), Gaps = 3/32 (9%)
Query: 68 CLDTLGNV--NDGVVGLYPCHHTGGNQAWSLT 97
CLD N + L+ C TG NQ W++T
Sbjct: 584 CLDAYNAATANGTSLVLWSCG-TGDNQKWTVT 614
>2ao3_A 29-kDa galactose-binding lectin; earthworm lumbricus terrestris,
hemagglutinin, R-type lectin, beta-trefoil fold, sugar
complex; HET: MGC; 1.80A {Lumbricus terrestris} PDB:
2d12_A* 2zqo_A* 2zqn_A* 2dry_A* 2drz_A* 2ds0_A*
Length = 130
Score = 30.9 bits (70), Expect = 0.047
Identities = 9/57 (15%), Positives = 18/57 (31%), Gaps = 6/57 (10%)
Query: 67 WCLDTLGNVNDGVVGLYPCHHTGGNQAWSLTKEGFIK--HHDTCLTIVNEMPGTGTH 121
+ +D + + P +AW ++ + D L I+ G H
Sbjct: 59 FAID----ASHEQIETQPFDPNNPKRAWIVSGNTIAQLSDRDIVLDIIKSDKEAGAH 111
>2d1z_A Endo-1,4-beta-D-xylanase; TIM-barrel, retaining enzyme,
catalytic-site mutant, chemica hydrolase; 1.60A
{Streptomyces olivaceoviridis} PDB: 2d20_A* 2d22_A
2d23_A 2d24_A* 1xyf_A 1isw_A* 1isx_A* 1isy_A* 1isv_A*
1it0_A* 1v6u_A* 1v6v_A* 1v6w_A* 1v6x_A* 1isz_A
Length = 436
Score = 31.5 bits (71), Expect = 0.063
Identities = 21/58 (36%), Positives = 24/58 (41%), Gaps = 3/58 (5%)
Query: 65 GAWCLDTLGNVNDGVVGLYPCHHTGGNQAWSLTKEGFIKHHDT--CLTIVNEMPGTGT 120
G CLD G N V +Y C G NQ W L +G I + CL V GT
Sbjct: 362 GDKCLDAAGTGNGTKVQIYSC-WGGDNQKWRLNSDGSIVGVQSGLCLDAVGGGTANGT 418
Score = 26.9 bits (59), Expect = 1.9
Identities = 14/36 (38%), Positives = 17/36 (47%), Gaps = 3/36 (8%)
Query: 64 QGAWCLD-TLGNVNDGV-VGLYPCHHTGGNQAWSLT 97
Q CLD G +G + LY C G NQ W+ T
Sbjct: 402 QSGLCLDAVGGGTANGTLIQLYSCS-NGSNQRWTRT 436
>3phz_A Ricin B-related lectin; beta trefoil, saccharide binding lectin,
2,6-sialyl-lactosam sugar binding protein; HET: NAG GAL
SIA; 1.70A {Polyporus squamosus}
Length = 286
Score = 30.1 bits (67), Expect = 0.16
Identities = 18/89 (20%), Positives = 29/89 (32%), Gaps = 15/89 (16%)
Query: 39 KWYLEHVYPELQVPSSSQITIGIIHQGAWCLD-TLGNVNDG-VVGLYPCHHTGGNQAWSL 96
W +E V + T+ G +D DG + Y G NQ W +
Sbjct: 48 LWLIEPV------GEADTYTVRNAFAG-SYMDLAGHAATDGTAIIGYRPT-GGDNQKWII 99
Query: 97 TKEG-----FIKHHDTCLTIVNEMPGTGT 120
++ K T +T++N G
Sbjct: 100 SQINDVWKIKSKETGTFVTLLNGDGGGTG 128
Score = 28.9 bits (64), Expect = 0.39
Identities = 6/35 (17%), Positives = 10/35 (28%), Gaps = 2/35 (5%)
Query: 68 CLDTLGN--VNDGVVGLYPCHHTGGNQAWSLTKEG 100
+ L G V + +Q W+ K
Sbjct: 116 FVTLLNGDGGGTGTVVGWQNITNNTSQNWTFQKLS 150
Score = 27.8 bits (61), Expect = 1.2
Identities = 8/63 (12%), Positives = 15/63 (23%), Gaps = 7/63 (11%)
Query: 58 TIGIIHQGAWCLD-TLGNVNDGV-VGLYPCHHTGG-NQAWSLTKEGFIKHHDTCLTIVNE 114
I + L + + + + N W + G T+ N
Sbjct: 10 YIASAYVANTRLALSEDSSANKSPDVIISSDAVDPLNNLWLIEPVG----EADTYTVRNA 65
Query: 115 MPG 117
G
Sbjct: 66 FAG 68
>2vse_A MTX holotoxin, mosquitocidal toxin; ADP-ribosyltransferase, lectin,
ricin-B-like domain; 2.5A {Lysinibacillus sphaericus}
PDB: 2vsa_A
Length = 841
Score = 29.9 bits (66), Expect = 0.23
Identities = 15/77 (19%), Positives = 22/77 (28%), Gaps = 10/77 (12%)
Query: 39 KWYLEHVYPELQVPSSSQITIGIIHQGAWCLDTL-GNVNDGV-VGLYPCHHTGGNQAWSL 96
W +E + I LD G+ DG + + H G NQ W +
Sbjct: 498 YWLIERN-------EDNTYIIRNYENRKIVLDLSNGSTTDGNGLLGFEFH-GGINQRWII 549
Query: 97 TKEGFIKHHDTCLTIVN 113
F D +
Sbjct: 550 KPFSFNSIQDGIYQFMT 566
>2exr_A Cytokinin dehydrogenase 7; AT5G21482.1, cytokinin
oxidase/dehydrogenase, CKX, structura genomics, protein
structure initiative; HET: MSE FAD; 1.70A {Arabidopsis
thaliana} PDB: 2q4w_A*
Length = 524
Score = 29.2 bits (65), Expect = 0.35
Identities = 14/92 (15%), Positives = 30/92 (32%), Gaps = 8/92 (8%)
Query: 8 YYAEVPLAKTIPFGDISDRVALRERLQCKPFKWYLEHVYPELQVPSSS--QITIGIIHQG 65
+ + +P+ D RV E + + W H + L V +
Sbjct: 344 FNEGLRFEVDLPYVDFLLRVKRSEEIAKENGTWETPHPWLNLFVSKRDIGDFNRTVFK-- 401
Query: 66 AWCLDTLGNVNDGVVGLYPCHHTGGNQAWSLT 97
+ + N +G + +YP + + S+
Sbjct: 402 ----ELVKNGVNGPMLVYPLLRSRWDDRTSVV 429
>3pg0_A Threefoil; symmetric design, beta-trefoil, engineered module, sugar
BIN NOVO protein; HET: BTB GOL; 1.62A {Artificial gene}
Length = 165
Score = 28.5 bits (64), Expect = 0.51
Identities = 11/33 (33%), Positives = 12/33 (36%), Gaps = 3/33 (9%)
Query: 68 CLDTLGN-VNDGV-VGLYPCHHTGGNQAWSLTK 98
LD +DG V Y G NQ W L
Sbjct: 133 ALDVENASTSDGANVIQYSYS-GGDNQQWRLVD 164
Score = 28.1 bits (63), Expect = 0.58
Identities = 16/77 (20%), Positives = 21/77 (27%), Gaps = 16/77 (20%)
Query: 39 KWYLEHVYPELQVPSSSQITIGIIHQGAWCLDTLGN--VNDGVVGLYPCHHTGGNQAWSL 96
+W L + + H G LD + V Y G NQ W L
Sbjct: 65 QWRLVDL-------GDGYYKLVARHSG-KALDVENASTSDGANVIQYSYS-GGDNQQWRL 115
Query: 97 TKEGFIKHHDTCLTIVN 113
G D +V
Sbjct: 116 VDLG-----DGYYKLVA 127
Score = 26.5 bits (59), Expect = 1.9
Identities = 12/35 (34%), Positives = 14/35 (40%), Gaps = 3/35 (8%)
Query: 68 CLDTLG-NVNDGV-VGLYPCHHTGGNQAWSLTKEG 100
LD + +DG V Y G NQ W L G
Sbjct: 39 ALDVENASTSDGANVIQYSYS-GGDNQQWRLVDLG 72
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 27.7 bits (61), Expect = 1.2
Identities = 21/108 (19%), Positives = 31/108 (28%), Gaps = 31/108 (28%)
Query: 8 YYAEVPLAKTIPFGDISDRVALRERLQCKPFKWYLEHVYPELQVPSSSQITIGIIHQGAW 67
Y A LA + + + V R G+ Q A
Sbjct: 1767 YAALASLADVMSIESLVEVVFYR-----------------------------GMTMQVAV 1797
Query: 68 CLDTLGNVNDGVVGLYP--CHHTGGNQAWSLTKEGFIKHHDTCLTIVN 113
D LG N G++ + P + +A E K + IVN
Sbjct: 1798 PRDELGRSNYGMIAINPGRVAASFSQEALQYVVERVGKRTGWLVEIVN 1845
Score = 27.3 bits (60), Expect = 1.9
Identities = 12/51 (23%), Positives = 19/51 (37%), Gaps = 7/51 (13%)
Query: 13 PLAKTIPFGDISDRVALRERL------QCKPFKWYLEHVYPELQVPSSSQI 57
P+ TI FG + +RE K E ++ E+ S+S
Sbjct: 1669 PVNLTIHFGGEKGK-RIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYT 1718
Score = 26.2 bits (57), Expect = 4.1
Identities = 25/152 (16%), Positives = 43/152 (28%), Gaps = 34/152 (22%)
Query: 5 KHYYYAEVPLAKTIPFGDISDRVALRERLQCKPFKWYL--------EHVYPELQ-VPSSS 55
K+Y A + + S AL + + + + EL+ + +
Sbjct: 124 KNYITARIMAKRPFDKKSNS---ALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQTY 180
Query: 56 QITIG-IIHQGAWCLDTLGNVNDGVVGLYPCHHTGGN-QAWSLTKEGFIKHHDTCLTIVN 113
+ +G +I A L L ++ G N W L D L+I
Sbjct: 181 HVLVGDLIKFSAETLSELIRTTLDAEKVFT---QGLNILEW-LENPSNTPDKDYLLSIPI 236
Query: 114 EMPGTG----------------THEEVRELFR 129
P G T E+R +
Sbjct: 237 SCPLIGVIQLAHYVVTAKLLGFTPGELRSYLK 268
>3o8l_A 6-phosphofructokinase, muscle type; transferase; HET: ATP ADP;
3.20A {Oryctolagus cuniculus} PDB: 3o8n_A*
Length = 762
Score = 26.9 bits (60), Expect = 2.4
Identities = 9/40 (22%), Positives = 17/40 (42%)
Query: 27 VALRERLQCKPFKWYLEHVYPELQVPSSSQITIGIIHQGA 66
+ LR R ++ Y + P S T+ +++ GA
Sbjct: 371 MKLRGRSFMNNWEVYKLLAHIRPPAPKSGSYTVAVMNVGA 410
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell
membrane, ION transport, transmembrane; HET: GNP; 1.90A
{Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Length = 165
Score = 25.9 bits (58), Expect = 3.0
Identities = 11/38 (28%), Positives = 18/38 (47%), Gaps = 8/38 (21%)
Query: 88 TGGNQA---WS-LT---KEGFIKHHDTCLTIVNEMPGT 118
TG N W +T KEG +++ +V ++PG
Sbjct: 24 TGENVYIGNWPGVTVEKKEGEFEYNGEKFKVV-DLPGV 60
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane
G-proteins, cell membrane, ION transport, transmembrane;
HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Length = 188
Score = 25.6 bits (57), Expect = 4.3
Identities = 11/38 (28%), Positives = 18/38 (47%), Gaps = 8/38 (21%)
Query: 88 TGGNQA---WS-LT---KEGFIKHHDTCLTIVNEMPGT 118
TG N W +T KEG +++ +V ++PG
Sbjct: 28 TGENVYIGNWPGVTVEKKEGEFEYNGEKFKVV-DLPGV 64
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO,
cell inner membrane, cell ME GTP-binding, ION transport,
membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A*
3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Length = 274
Score = 25.8 bits (57), Expect = 4.6
Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 8/38 (21%)
Query: 88 TGGNQA---WS-LT---KEGFIKHHDTCLTIVNEMPGT 118
TG Q W+ +T KEG D +T+V ++PGT
Sbjct: 24 TGSRQRVGNWAGVTVERKEGQFSTTDHQVTLV-DLPGT 60
>1w1o_A Cytokinin dehydrogenase 1; flavin, oxidoreductase, flavoprotein,
FAD; HET: NAG FAD; 1.7A {Zea mays} SCOP: d.58.32.4
d.145.1.1 PDB: 1w1q_A* 1w1r_A* 1w1s_A* 3dq0_A* 2qkn_A*
3c0p_A* 3bw7_A* 2qpm_A* 3kjm_A*
Length = 534
Score = 25.8 bits (56), Expect = 5.1
Identities = 17/91 (18%), Positives = 29/91 (31%), Gaps = 7/91 (7%)
Query: 8 YYAEVPLAKTIPFGDISDRVALRERLQCKPFKWYLEHVYPELQVPSSSQITIGIIHQGAW 67
Y + + + DRV E K W + H + + VP S I
Sbjct: 359 YVEGFAFQRDVAYAAFLDRVHGEEVALNKLGLWRVPHPWLNMFVPRS-----RIADFDRG 413
Query: 68 CLDTLGNVND--GVVGLYPCHHTGGNQAWSL 96
+ D G + +YP + + + S
Sbjct: 414 VFKGILQGTDIVGPLIVYPLNKSMWDDGMSA 444
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif,
systemic lupus erythematosus, phosphoprotein, RNA
maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1
PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Length = 193
Score = 25.6 bits (55), Expect = 6.1
Identities = 5/70 (7%), Positives = 19/70 (27%), Gaps = 4/70 (5%)
Query: 61 IIHQGAWCLDTLGNVNDGVVGLYPCHHTGGNQAWSLTKEGFIKHHDTCLTIVNEMPGTGT 120
I+ + L +++ + + + + + P T
Sbjct: 67 IVEALSKSKAELMEISEDKTKIRRSPS----KPLPEVTDEYKNDVKNRSVYIKGFPTDAT 122
Query: 121 HEEVRELFRP 130
++++E
Sbjct: 123 LDDIKEWLED 132
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase,
G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima}
PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Length = 258
Score = 25.3 bits (56), Expect = 6.2
Identities = 11/38 (28%), Positives = 18/38 (47%), Gaps = 8/38 (21%)
Query: 88 TGGNQA---WS-LT---KEGFIKHHDTCLTIVNEMPGT 118
TG Q W +T KEG + + ++ ++PGT
Sbjct: 26 TGTKQYVANWPGVTVEKKEGVFTYKGYTINLI-DLPGT 62
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle,
G-protein, prokaryote, GTP-BIND nucleotide-binding,
metal transport; 2.70A {Pyrococcus furiosus}
Length = 271
Score = 25.4 bits (56), Expect = 6.2
Identities = 11/38 (28%), Positives = 19/38 (50%), Gaps = 8/38 (21%)
Query: 88 TGGNQA---WS-LT---KEGFIKHHDTCLTIVNEMPGT 118
TG Q W +T KEG +++ + +V ++PG
Sbjct: 24 TGLRQHVGNWPGVTVEKKEGIMEYREKEFLVV-DLPGI 60
>3o8o_B 6-phosphofructokinase subunit beta; transferase; HET: F6P FDP;
2.90A {Saccharomyces cerevisiae}
Length = 766
Score = 25.3 bits (56), Expect = 7.1
Identities = 12/57 (21%), Positives = 24/57 (42%), Gaps = 3/57 (5%)
Query: 13 PLAKTIPFGDISDRVALRERLQC---KPFKWYLEHVYPELQVPSSSQITIGIIHQGA 66
+A+ I D ++LR+ F + E ++P ++ I I++ GA
Sbjct: 347 AVAEAIQAKDFKRAMSLRDTEFIEHLNNFMAINSADHNEPKLPKDKRLKIAIVNVGA 403
>3bt5_A Uncharacterized protein DUF305; structural genomics, unknown
function, PSI-2, protein structure initiative; 1.35A
{Deinococcus radiodurans R1}
Length = 177
Score = 25.2 bits (54), Expect = 7.1
Identities = 7/29 (24%), Positives = 10/29 (34%)
Query: 99 EGFIKHHDTCLTIVNEMPGTGTHEEVREL 127
I+HH + + M EV L
Sbjct: 109 RLMIRHHQGAVAMTLPMLDAAARPEVERL 137
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake,
cell inner membrane, cell GTP-binding, ION transport,
membrane; 2.50A {Legionella pneumophila}
Length = 256
Score = 24.9 bits (55), Expect = 7.8
Identities = 10/38 (26%), Positives = 15/38 (39%), Gaps = 8/38 (21%)
Query: 88 TGGNQA---WS-LT---KEGFIKHHDTCLTIVNEMPGT 118
T NQ W +T K G + + I ++PG
Sbjct: 22 TNANQRVGNWPGVTVEKKTGEFLLGEHLIEIT-DLPGV 58
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR;
fatty acid synthase, acyl-carrier-protein, beta-ketoacyl
RED beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae}
Length = 1688
Score = 25.2 bits (55), Expect = 9.1
Identities = 8/30 (26%), Positives = 13/30 (43%), Gaps = 13/30 (43%)
Query: 77 DGVVGLYPCHHTGGNQAWSLTKEGFIKHHD 106
+G V + AW + GFI +H+
Sbjct: 849 EGCVEM----------AW-IM--GFISYHN 865
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 25.2 bits (54), Expect = 9.8
Identities = 28/183 (15%), Positives = 46/183 (25%), Gaps = 88/183 (48%)
Query: 2 DNYKHY-----------------------YY---------AEVPLAKTI-------PFGD 22
DN+KH + A +P + D
Sbjct: 345 DNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIP-TILLSLIWFDVIKSD 403
Query: 23 ISD------RVALRERLQCKPFKWYLEHVYPELQVPSSSQITIGIIHQ---------GAW 67
+ + +L E+ Q K + +Y EL+V ++ +H+ +
Sbjct: 404 VMVVVNKLHKYSLVEK-QPKESTISIPSIYLELKVKLENEYA---LHRSIVDHYNIPKTF 459
Query: 68 CLDTLG-NVNDGVVGLYPCHHTGGNQAWSLTKEGFIKHHDTCLTIVNEMPGTGTHEEVRE 126
D L D Y H G HH + E +
Sbjct: 460 DSDDLIPPYLDQ----YFYSHIG--------------HH---------LKNIEHPERM-T 491
Query: 127 LFR 129
LFR
Sbjct: 492 LFR 494
>3opy_A 6-phosphofructo-1-kinase alpha-subunit; ATP binding,
fructose-6-phosphate bindi magnesium binding, citrate
binding, ADP binding; HET: ATP; 3.05A {Pichia pastoris}
Length = 989
Score = 25.2 bits (55), Expect = 10.0
Identities = 15/57 (26%), Positives = 25/57 (43%), Gaps = 3/57 (5%)
Query: 13 PLAKTIPFGDISDRVALRER---LQCKPFKWYLEHVYPELQVPSSSQITIGIIHQGA 66
++ I D + LR++ + F ++ VP SS++ I IIH GA
Sbjct: 552 TVSAAIEAKDFDKALQLRDQEFATSYENFLSVSKYDDGSYLVPESSRLNIAIIHVGA 608
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.321 0.140 0.460
Gapped
Lambda K H
0.267 0.0516 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,196,821
Number of extensions: 117545
Number of successful extensions: 283
Number of sequences better than 10.0: 1
Number of HSP's gapped: 265
Number of HSP's successfully gapped: 78
Length of query: 130
Length of database: 6,701,793
Length adjustment: 83
Effective length of query: 47
Effective length of database: 4,384,350
Effective search space: 206064450
Effective search space used: 206064450
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.3 bits)