RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy15024
(130 letters)
>d1xhba2 c.68.1.17 (A:95-422) Polypeptide
N-acetylgalactosaminyltransferase 1, N-terminal domain
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 328
Score = 83.4 bits (205), Expect = 8e-21
Identities = 24/48 (50%), Positives = 35/48 (72%)
Query: 1 MDNYKHYYYAEVPLAKTIPFGDISDRVALRERLQCKPFKWYLEHVYPE 48
MD +K+++Y P + +GDIS R+ LR +LQCKPF WYLE++YP+
Sbjct: 280 MDEFKNFFYIISPGVTKVDYGDISSRLGLRRKLQCKPFSWYLENIYPD 327
>d1xhba1 b.42.2.1 (A:423-553) Polypeptide
N-acetylgalactosaminyltransferase 1, C-terminal domain
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 131
Score = 49.5 bits (117), Expect = 3e-09
Identities = 20/67 (29%), Positives = 29/67 (43%), Gaps = 1/67 (1%)
Query: 50 QVPSSSQITIGIIHQGA-WCLDTLGNVNDGVVGLYPCHHTGGNQAWSLTKEGFIKHHDTC 108
Q+P I + CLD + + VG++ CH GGNQ +S T I+ D C
Sbjct: 1 QIPRHYFSLGEIRNVETNQCLDNMARKENEKVGIFNCHGMGGNQVFSYTANKEIRTDDLC 60
Query: 109 LTIVNEM 115
L +
Sbjct: 61 LDVSKLN 67
>d1rzob1 b.42.2.1 (B:2001-2135) Plant cytotoxin B-chain (lectin)
{Castor bean (Ricinus communis), Ricin [TaxId: 3988]}
Length = 135
Score = 47.1 bits (111), Expect = 3e-08
Identities = 19/74 (25%), Positives = 31/74 (41%), Gaps = 3/74 (4%)
Query: 50 QVPSSSQITIGIIHQGAWCLDTLG--NVNDGVVGLYPCHHTGG-NQAWSLTKEGFIKHHD 106
V + + I+ + C+D G + + L+PC NQ W+L K+ I+ +
Sbjct: 2 DVCMDPEPIVRIVGRNGLCVDVTGEEFFDGNPIQLWPCKSNTDWNQLWTLRKDSTIRSNG 61
Query: 107 TCLTIVNEMPGTGT 120
CLTI P
Sbjct: 62 KCLTISKSSPRQQV 75
Score = 31.0 bits (69), Expect = 0.020
Identities = 11/63 (17%), Positives = 16/63 (25%), Gaps = 3/63 (4%)
Query: 60 GIIHQGAWCLDTLGNVNDGVVGLYPCHHTGGNQA-WSLTKEGFIKH--HDTCLTIVNEMP 116
I CL + V +Y C W + I + L +
Sbjct: 55 STIRSNGKCLTISKSSPRQQVVIYNCSTATVGATRWQIWDNRTIINPRSGLVLAATSGNS 114
Query: 117 GTG 119
GT
Sbjct: 115 GTK 117
Score = 27.9 bits (61), Expect = 0.22
Identities = 6/38 (15%), Positives = 13/38 (34%), Gaps = 2/38 (5%)
Query: 61 IIH-QGAWCLDTLGNVNDGVVGLYPCHHTGGNQAWSLT 97
II+ + L + + + + +Q W T
Sbjct: 98 IINPRSGLVLAATSGNSGTKLTVQTNIY-AVSQGWLPT 134
>d1ggpb1 b.42.2.1 (B:11-140) Plant cytotoxin B-chain (lectin)
{Mongolian snake-gourd (Trichosanthes kirilowii), Lectin
1 [TaxId: 3677]}
Length = 126
Score = 42.1 bits (98), Expect = 2e-06
Identities = 17/62 (27%), Positives = 26/62 (41%), Gaps = 3/62 (4%)
Query: 58 TIGIIHQGAWCLDTLGNVNDGV-VGLYPCHHTGGNQAWSLTKEGFIKHHDTCLTIVNEMP 116
T+ I + +C D G +G + L C NQ W+L +E I+ + CLT
Sbjct: 5 TVRIAGRDGFCADVNGEGQNGAAIILKKCAE-NDNQLWTLKREATIRSNGGCLT-TAAAE 62
Query: 117 GT 118
Sbjct: 63 QA 64
Score = 27.1 bits (59), Expect = 0.47
Identities = 12/60 (20%), Positives = 19/60 (31%), Gaps = 2/60 (3%)
Query: 62 IHQGAWCLDTLGNVNDGVVGLYPCHHTG-GNQAWSLTKEGFIKHHDTCLTIVNEMPGTGT 120
I CL T G+Y C AW + G I + + L + + +
Sbjct: 49 IRSNGGCLTTAAA-EQAKAGIYDCTQATAELSAWEIADNGTIINPASSLVLSSGAANSLL 107
Score = 26.3 bits (57), Expect = 0.81
Identities = 4/31 (12%), Positives = 9/31 (29%), Gaps = 1/31 (3%)
Query: 67 WCLDTLGNVNDGVVGLYPCHHTGGNQAWSLT 97
L + + +G+ + Q W
Sbjct: 96 LVLSSGAANSLLDLGVQTNSY-ASAQGWRTG 125
>d1m2tb1 b.42.2.1 (B:249-384) Plant cytotoxin B-chain (lectin)
{European mistletoe (Viscum album) [TaxId: 3972]}
Length = 136
Score = 41.8 bits (97), Expect = 2e-06
Identities = 15/75 (20%), Positives = 32/75 (42%), Gaps = 3/75 (4%)
Query: 50 QVPSSSQITIGIIHQGAWCLDTLGN--VNDGVVGLYPCHHTGG-NQAWSLTKEGFIKHHD 106
++S+ + I+ + +D + + + L+P NQ W++ K+G I+ +
Sbjct: 2 VTCTASEPIVRIVGRNGMTVDVRDDDFHDGNQIQLWPSKSNNDPNQLWTIKKDGTIRSNG 61
Query: 107 TCLTIVNEMPGTGTH 121
+CLT G
Sbjct: 62 SCLTTYGYTAGVYVM 76
Score = 28.3 bits (62), Expect = 0.18
Identities = 3/31 (9%), Positives = 7/31 (22%), Gaps = 1/31 (3%)
Query: 67 WCLDTLGNVNDGVVGLYPCHHTGGNQAWSLT 97
L + + + + Q W
Sbjct: 105 LVLAASSGIKGTTLTVQTLDY-TLGQGWLAG 134
>d1vcla1 b.42.2.1 (A:1-150) Hemolytic lectin CEL-III, domains 1 and
2 {Cucumaria echinata [TaxId: 40245]}
Length = 150
Score = 41.8 bits (97), Expect = 3e-06
Identities = 14/73 (19%), Positives = 29/73 (39%), Gaps = 3/73 (4%)
Query: 50 QVPSSSQITIGIIH--QGAWCLDTLGNVNDGVVGLYPCHHTGGNQAWSLTKEGFIKHHDT 107
+V ++ + IG + + C+D +GN G + Y C +Q + +G I++
Sbjct: 1 EVLCTNPLDIGELRSFKSKQCVDIVGNQGSGNIATYDCDG-LSDQQIIICGDGTIRNEAR 59
Query: 108 CLTIVNEMPGTGT 120
+ G
Sbjct: 60 NYCFTPDGSGNAN 72
Score = 32.9 bits (74), Expect = 0.005
Identities = 14/64 (21%), Positives = 23/64 (35%), Gaps = 2/64 (3%)
Query: 38 FKWYLEHVYPELQVPSSSQITIGIIH-QGAWCLDTLGNVNDGVVGLYPCHHTGGNQAWSL 96
+W Q+ II+ CLD G+ G +G+Y C +Q + +
Sbjct: 88 QRWRQGRRKTFTDNGGIEQVATEIINLASGKCLDIEGSDGTGDIGVYDC-QNLDDQYFYV 146
Query: 97 TKEG 100
G
Sbjct: 147 RSRG 150
>d1hwmb2 b.42.2.1 (B:136-266) Plant cytotoxin B-chain (lectin)
{Sambucus ebulus, ebulin [TaxId: 28503]}
Length = 131
Score = 41.0 bits (95), Expect = 4e-06
Identities = 13/61 (21%), Positives = 23/61 (37%), Gaps = 3/61 (4%)
Query: 61 IIHQGAWCLDTLGNVNDGVVGLYPCHHTGGNQAWSLTKEGFIKHH-DTCLTIVNEMPGTG 119
I+ CL G N+ V + C T Q W+L + I+ + L + + +
Sbjct: 9 IVGYNEMCLQANGENNN--VWMEDCDVTSVQQQWALFDDRTIRVNNSRGLCVTSNGYVSK 66
Query: 120 T 120
Sbjct: 67 D 67
>d2aaib2 b.42.2.1 (B:136-262) Plant cytotoxin B-chain (lectin)
{Castor bean (Ricinus communis), Ricin [TaxId: 3988]}
Length = 127
Score = 40.3 bits (93), Expect = 8e-06
Identities = 13/68 (19%), Positives = 23/68 (33%), Gaps = 5/68 (7%)
Query: 54 SSQITIGIIHQGAWCLDTLGNVNDGVVGLYPCHHTGGNQAWSLTKEGFIK-HHDTCLTIV 112
+ I+ CL N G V + C Q W+L +G I+ + +
Sbjct: 2 TQPFVTTIVGLYGLCLQA----NSGQVWIEDCSSEKAEQQWALYADGSIRPQQNRDNCLT 57
Query: 113 NEMPGTGT 120
++ T
Sbjct: 58 SDSNIRET 65
>d1ggpb2 b.42.2.1 (B:141-267) Plant cytotoxin B-chain (lectin)
{Mongolian snake-gourd (Trichosanthes kirilowii), Lectin
1 [TaxId: 3677]}
Length = 128
Score = 40.2 bits (93), Expect = 8e-06
Identities = 6/54 (11%), Positives = 17/54 (31%), Gaps = 3/54 (5%)
Query: 68 CLDTLGNVNDGVVGLYPCHHTGGNQAWSLTKEGFIK-HHDTCLTIVNEMPGTGT 120
C+ + + + C Q W+L + I+ ++ + +
Sbjct: 16 CMQAGNGPAN--LWMSECRAGKAEQQWALLTDKSIRSETNSDNCLTSAADAGPK 67
>d1abrb1 b.42.2.1 (B:1-140) Plant cytotoxin B-chain (lectin) {Abrus
precatorius [TaxId: 3816]}
Length = 140
Score = 39.9 bits (92), Expect = 1e-05
Identities = 17/70 (24%), Positives = 29/70 (41%), Gaps = 3/70 (4%)
Query: 55 SQITIGIIHQGAWCLDTLGN--VNDGVVGLYPCHHTGG-NQAWSLTKEGFIKHHDTCLTI 111
+ T+ I + C+D N N + ++ C NQ W+L + I+ + CLT
Sbjct: 12 YEPTVRIGGRDGMCVDVYDNGYHNGNRIIMWKCKDRLEENQLWTLKSDKTIRSNGKCLTT 71
Query: 112 VNEMPGTGTH 121
PG+
Sbjct: 72 YGYAPGSYVM 81
Score = 25.6 bits (55), Expect = 1.4
Identities = 4/31 (12%), Positives = 8/31 (25%), Gaps = 1/31 (3%)
Query: 67 WCLDTLGNVNDGVVGLYPCHHTGGNQAWSLT 97
L + G + + + Q W
Sbjct: 110 LVLSAESSSMGGTLTVQTNEY-LMRQGWRTG 139
>d1hwmb1 b.42.2.1 (B:3-135) Plant cytotoxin B-chain (lectin)
{Sambucus ebulus, ebulin [TaxId: 28503]}
Length = 133
Score = 36.8 bits (84), Expect = 1e-04
Identities = 14/72 (19%), Positives = 26/72 (36%), Gaps = 3/72 (4%)
Query: 52 PSSSQITIGIIHQGAWCLDTLGN--VNDGVVGLYPCHHTGGNQAWSLTKEGFIKHHDTCL 109
+ T I+ + C+D + + L+PC NQ W+ + I+ C+
Sbjct: 4 AIPAPFTRRIVGRDGLCVDVRNGYDTDGTPIQLWPCGT-QRNQQWTFYNDKTIRSMGKCM 62
Query: 110 TIVNEMPGTGTH 121
T G+
Sbjct: 63 TANGLNSGSYIM 74
Score = 30.7 bits (68), Expect = 0.026
Identities = 4/31 (12%), Positives = 11/31 (35%), Gaps = 1/31 (3%)
Query: 67 WCLDTLGNVNDGVVGLYPCHHTGGNQAWSLT 97
+ + + L H +Q W+++
Sbjct: 103 LVMTAPSGASRTTLLLENNIH-AASQGWTVS 132
>d1m2tb2 b.42.2.1 (B:385-510) Plant cytotoxin B-chain (lectin)
{European mistletoe (Viscum album) [TaxId: 3972]}
Length = 126
Score = 35.6 bits (81), Expect = 4e-04
Identities = 12/54 (22%), Positives = 20/54 (37%), Gaps = 5/54 (9%)
Query: 68 CLDTLGNVNDGVVGLYPCHHTGGNQAWSLTKEGFIK-HHDTCLTIVNEMPGTGT 120
C+++ G V + C NQ W+L +G I+ + N T
Sbjct: 15 CMES----AGGSVYVETCTAGQENQRWALYGDGSIRPKQLQSQCLTNGRDSIST 64
>d1abrb2 b.42.2.1 (B:141-267) Plant cytotoxin B-chain (lectin)
{Abrus precatorius [TaxId: 3816]}
Length = 127
Score = 34.9 bits (79), Expect = 8e-04
Identities = 14/71 (19%), Positives = 22/71 (30%), Gaps = 7/71 (9%)
Query: 54 SSQITIGIIHQGAWCLDTLGNVNDGVVGLYPCHHTGGNQAWSLTKEGFIKHHDT---CLT 110
+S I C+ V + C Q W+L +G I+ CLT
Sbjct: 2 TSPFVTSISGYSDLCMQA----QGSNVWMADCDSNKKEQQWALYTDGSIRSVQNTNNCLT 57
Query: 111 IVNEMPGTGTH 121
+ G+
Sbjct: 58 SKDHKQGSTIL 68
Score = 24.9 bits (53), Expect = 3.0
Identities = 9/48 (18%), Positives = 17/48 (35%)
Query: 58 TIGIIHQGAWCLDTLGNVNDGVVGLYPCHHTGGNQAWSLTKEGFIKHH 105
+I + CL + + + L C + +Q W +G I
Sbjct: 45 SIRSVQNTNNCLTSKDHKQGSTILLMGCSNGWASQRWVFKNDGSIYSL 92
>d1knma_ b.42.2.1 (A:) Xylan binding domain, CBM13
(Endo-1,4-beta-xylanase C-terminal domain) {Streptomyces
lividans [TaxId: 1916]}
Length = 129
Score = 33.0 bits (74), Expect = 0.003
Identities = 20/61 (32%), Positives = 23/61 (37%), Gaps = 3/61 (4%)
Query: 63 HQGAWCLDTLGNVNDGVVGLYPCHHTGGNQAWSLTKEGFIKH--HDTCLTIVNEMPGTGT 120
G CLD G N V +Y C G NQ W L +G + CL V GT
Sbjct: 53 VYGDKCLDAAGTSNGSKVQIYSCWG-GDNQKWRLNSDGSVVGVQSGLCLDAVGNGTANGT 111
Query: 121 H 121
Sbjct: 112 L 112
Score = 26.1 bits (56), Expect = 1.0
Identities = 14/33 (42%), Positives = 19/33 (57%), Gaps = 3/33 (9%)
Query: 67 WCLDTLGNV--NDGVVGLYPCHHTGGNQAWSLT 97
CLD +GN N ++ LY C + G NQ W+ T
Sbjct: 98 LCLDAVGNGTANGTLIQLYTCSN-GSNQRWTRT 129
>d1dqga_ b.42.2.2 (A:) Mannose receptor {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 134
Score = 27.5 bits (60), Expect = 0.31
Identities = 9/41 (21%), Positives = 11/41 (26%)
Query: 68 CLDTLGNVNDGVVGLYPCHHTGGNQAWSLTKEGFIKHHDTC 108
CL + V LY C Q W + T
Sbjct: 54 CLGVPSKTDWASVTLYACDSKSEYQKWECKNDTLFGIKGTE 94
>d1vcla2 b.42.2.1 (A:151-283) Hemolytic lectin CEL-III, domains 1
and 2 {Cucumaria echinata [TaxId: 40245]}
Length = 133
Score = 26.5 bits (57), Expect = 0.66
Identities = 10/63 (15%), Positives = 19/63 (30%), Gaps = 4/63 (6%)
Query: 34 QCKPFKWYLEHVYPELQVPSSSQITIGIIHQGAWCLDTLGNVNDGVVGLYPCHHTGGNQA 93
+C + + + + CLD G+ G VG + C +Q
Sbjct: 73 RCDDLRDQMWSRPNAYCNGDYCSF---LNKESNKCLDVSGDQGTGDVGTWQCDG-LPDQR 128
Query: 94 WSL 96
+
Sbjct: 129 FKW 131
>d2ihoa1 b.42.2.1 (A:2-155) Agglutinin MOA, N-terminal domain
{Fairy-ring mushroom (Marasmius oreades) [TaxId:
181124]}
Length = 154
Score = 26.8 bits (58), Expect = 0.72
Identities = 8/68 (11%), Positives = 19/68 (27%), Gaps = 3/68 (4%)
Query: 34 QCKPFKWYLEHVYPELQVPSSSQITIGIIHQGAWCLDTLGNVNDG-VVGLYPC--HHTGG 90
Q F ++ + + I + G+ +DG + +
Sbjct: 87 QGTAFTTNPHQLWTIKKSSDGTSYKIQNYGSKTFVDLVNGDSSDGAKIAGWTGTWDEGNP 146
Query: 91 NQAWSLTK 98
+Q W +
Sbjct: 147 HQKWYFNR 154
>d2bo4a1 c.68.1.18 (A:2-382) Mannosylglycerate synthase, MGS
{Rhodothermus marinus [TaxId: 29549]}
Length = 381
Score = 25.7 bits (56), Expect = 2.1
Identities = 1/50 (2%), Positives = 6/50 (12%), Gaps = 4/50 (8%)
Query: 1 MDNYKHYYYAEVPLAKTIPFGDISDRVALRERLQCKPFKWYLEHVYPELQ 50
+ + + + L+
Sbjct: 281 WTPRQVELLELFTTPV---REGLRTCQRRPA-FNFMDEMAWAATYHVLLE 326
>d2a2ma1 a.132.1.3 (A:10-240) Hypothetical protein BT3146
{Bacteroides thetaiotaomicron [TaxId: 818]}
Length = 231
Score = 25.4 bits (55), Expect = 2.5
Identities = 7/72 (9%), Positives = 16/72 (22%), Gaps = 15/72 (20%)
Query: 73 GNVNDGVVGLYPCHHTGG---------------NQAWSLTKEGFIKHHDTCLTIVNEMPG 117
V + PC + + W G ++ +
Sbjct: 143 LASPYMCVVMLPCEYLWPWIANFLDGYTPTNSLYRFWIEWNGGTPNGAYQMGNMLEQYRD 202
Query: 118 TGTHEEVRELFR 129
++ E+F
Sbjct: 203 KIDEDKAVEIFN 214
>d1llaa3 b.1.18.3 (A:380-628) Arthropod hemocyanin, C-terminal
domain {Horseshoe crab (Limulus polyphemus) [TaxId:
6850]}
Length = 249
Score = 24.4 bits (53), Expect = 4.4
Identities = 13/59 (22%), Positives = 21/59 (35%), Gaps = 9/59 (15%)
Query: 2 DNYKHYY--YAEVPLAKTIPFGDISDRVALRERLQCKPFKWYLEHVYPELQVPSSSQIT 58
DN H + E+ L I G+ A L +PF + + V ++S
Sbjct: 24 DNVVHTFMREQELELKHGINPGNARSIKARYYHLDHEPFSY-------AVNVQNNSASD 75
>d1xxxa1 c.1.10.1 (A:5-300) Dihydrodipicolinate synthase
{Mycobacterium tuberculosis [TaxId: 1773]}
Length = 296
Score = 24.1 bits (51), Expect = 6.7
Identities = 10/42 (23%), Positives = 16/42 (38%), Gaps = 2/42 (4%)
Query: 75 VNDGVVGLYPCHHTGGNQAWSLTKEGFIKHHDTCLTIVNEMP 116
V+ G GL TG ++ + T I+ L V +
Sbjct: 38 VDQGCDGLVVSGTTG--ESPTTTDGEKIELLRAVLEAVGDRA 77
>d1jfla1 c.78.2.1 (A:1-115) Aspartate racemase {Archaeon Pyrococcus
horikoshii [TaxId: 53953]}
Length = 115
Score = 23.3 bits (50), Expect = 8.3
Identities = 6/26 (23%), Positives = 11/26 (42%)
Query: 3 NYKHYYYAEVPLAKTIPFGDISDRVA 28
N H + ++ A IP + + A
Sbjct: 83 NTAHAFVEDIRKAIKIPIISMIEETA 108
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.321 0.140 0.460
Gapped
Lambda K H
0.267 0.0452 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 547,721
Number of extensions: 23559
Number of successful extensions: 73
Number of sequences better than 10.0: 1
Number of HSP's gapped: 71
Number of HSP's successfully gapped: 37
Length of query: 130
Length of database: 2,407,596
Length adjustment: 76
Effective length of query: 54
Effective length of database: 1,364,116
Effective search space: 73662264
Effective search space used: 73662264
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 48 (23.0 bits)