BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy15026
         (98 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2DK3|A Chain A, Solution Structure Of Mib-Herc2 Domain In Hect Domain
          Containing Protein 1
          Length = 86

 Score = 57.0 bits (136), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 24/36 (66%), Positives = 31/36 (86%)

Query: 56 VRTQVMRHLIIGARVQRGLDWKWRDQDGIPPGEGNL 91
          VR+QV+++++ GARV RGLDWKWRDQDG P GEG +
Sbjct: 8  VRSQVLKYMVPGARVIRGLDWKWRDQDGSPQGEGTV 43


>pdb|3DKM|A Chain A, Crystal Structure Of The Hectd1 Cph Domain
          Length = 89

 Score = 52.0 bits (123), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 22/41 (53%), Positives = 29/41 (70%)

Query: 51 KARRLVRTQVMRHLIIGARVQRGLDWKWRDQDGIPPGEGNL 91
            R  +  Q +++++ GARV RGLDWKWRDQDG P GEG +
Sbjct: 9  SGRENLYFQGLKYMVPGARVTRGLDWKWRDQDGSPQGEGTV 49


>pdb|2I1L|A Chain A, Crystal Structure Of The C2 Form Of Fad Synthetase From
           Thermotoga Maritima
 pdb|2I1L|B Chain B, Crystal Structure Of The C2 Form Of Fad Synthetase From
           Thermotoga Maritima
          Length = 293

 Score = 26.2 bits (56), Expect = 5.2,   Method: Compositional matrix adjust.
 Identities = 19/62 (30%), Positives = 29/62 (46%), Gaps = 16/62 (25%)

Query: 10  GKNASGQTHYLSLSGFEIYGTLTGVCEDLGRAAREAEASVRKARRLVRTQVMRHLIIGAR 69
           GKNASG   +L   G E+Y               E E  V + +R V + ++R+L+   R
Sbjct: 105 GKNASGNASFLRKKGVEVY---------------EIEDVVVQGKR-VSSSLIRNLVQEGR 148

Query: 70  VQ 71
           V+
Sbjct: 149 VE 150


>pdb|1MRZ|A Chain A, Crystal Structure Of A Flavin Binding Protein From
           Thermotoga Maritima, Tm379
 pdb|1MRZ|B Chain B, Crystal Structure Of A Flavin Binding Protein From
           Thermotoga Maritima, Tm379
 pdb|1T6X|A Chain A, Crystal Structure Of Adp Bound Tm379
 pdb|1T6X|B Chain B, Crystal Structure Of Adp Bound Tm379
 pdb|1T6Y|A Chain A, Crystal Structure Of Adp, Amp, And Fmn Bound Tm379
 pdb|1T6Y|B Chain B, Crystal Structure Of Adp, Amp, And Fmn Bound Tm379
 pdb|1T6Z|A Chain A, Crystal Structure Of Riboflavin Bound Tm379
 pdb|1T6Z|B Chain B, Crystal Structure Of Riboflavin Bound Tm379
 pdb|1S4M|A Chain A, Crystal Structure Of Flavin Binding To Fad Synthetase From
           Thermotoga Maritina
 pdb|1S4M|B Chain B, Crystal Structure Of Flavin Binding To Fad Synthetase From
           Thermotoga Maritina
          Length = 293

 Score = 26.2 bits (56), Expect = 5.2,   Method: Compositional matrix adjust.
 Identities = 19/62 (30%), Positives = 29/62 (46%), Gaps = 16/62 (25%)

Query: 10  GKNASGQTHYLSLSGFEIYGTLTGVCEDLGRAAREAEASVRKARRLVRTQVMRHLIIGAR 69
           GKNASG   +L   G E+Y               E E  V + +R V + ++R+L+   R
Sbjct: 105 GKNASGNASFLRKKGVEVY---------------EIEDVVVQGKR-VSSSLIRNLVQEGR 148

Query: 70  VQ 71
           V+
Sbjct: 149 VE 150


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.322    0.139    0.433 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,895,271
Number of Sequences: 62578
Number of extensions: 89138
Number of successful extensions: 166
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 162
Number of HSP's gapped (non-prelim): 5
length of query: 98
length of database: 14,973,337
effective HSP length: 64
effective length of query: 34
effective length of database: 10,968,345
effective search space: 372923730
effective search space used: 372923730
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 45 (21.9 bits)