BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy15026
(98 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9ULT8|HECD1_HUMAN E3 ubiquitin-protein ligase HECTD1 OS=Homo sapiens GN=HECTD1 PE=1
SV=3
Length = 2610
Score = 154 bits (388), Expect = 2e-37, Method: Composition-based stats.
Identities = 68/92 (73%), Positives = 83/92 (90%), Gaps = 1/92 (1%)
Query: 1 WRHVRIQQNGKNASGQTHYLSLSGFEIYGTLTGVCED-LGRAAREAEASVRKARRLVRTQ 59
WRHVRI+Q GKNASGQTHYLSLSGFE+YGT+ GVCED LG+AA+EAEA++R+ RRLVR+Q
Sbjct: 1210 WRHVRIKQMGKNASGQTHYLSLSGFELYGTVNGVCEDQLGKAAKEAEANLRRQRRLVRSQ 1269
Query: 60 VMRHLIIGARVQRGLDWKWRDQDGIPPGEGNL 91
V+++++ GARV RGLDWKWRDQDG P GEG +
Sbjct: 1270 VLKYMVPGARVIRGLDWKWRDQDGSPQGEGTV 1301
>sp|Q69ZR2|HECD1_MOUSE E3 ubiquitin-protein ligase HECTD1 OS=Mus musculus GN=Hectd1 PE=1
SV=2
Length = 2618
Score = 153 bits (386), Expect = 4e-37, Method: Composition-based stats.
Identities = 67/92 (72%), Positives = 83/92 (90%), Gaps = 1/92 (1%)
Query: 1 WRHVRIQQNGKNASGQTHYLSLSGFEIYGTLTGVCED-LGRAAREAEASVRKARRLVRTQ 59
WRHVR++Q GKNASGQTHYLSLSGFE+YGT+ GVCED LG+AA+EAEA++R+ RRLVR+Q
Sbjct: 1215 WRHVRLKQMGKNASGQTHYLSLSGFELYGTVNGVCEDQLGKAAKEAEANLRRQRRLVRSQ 1274
Query: 60 VMRHLIIGARVQRGLDWKWRDQDGIPPGEGNL 91
V+++++ GARV RGLDWKWRDQDG P GEG +
Sbjct: 1275 VLKYMVPGARVIRGLDWKWRDQDGSPQGEGTV 1306
>sp|Q4U2R1|HERC2_MOUSE E3 ubiquitin-protein ligase HERC2 OS=Mus musculus GN=Herc2 PE=1 SV=3
Length = 4836
Score = 49.7 bits (117), Expect = 5e-06, Method: Composition-based stats.
Identities = 27/71 (38%), Positives = 38/71 (53%), Gaps = 9/71 (12%)
Query: 30 TLTGVCEDLGRAAREAEASVRKARR---------LVRTQVMRHLIIGARVQRGLDWKWRD 80
T V +D+ +AR A A+V + R + ++ + IG RV RG+DWKW D
Sbjct: 1825 TCDSVEDDMNASARGASATVLEETRKETAPVQLPVSGPELAAMMKIGTRVMRGVDWKWGD 1884
Query: 81 QDGIPPGEGNL 91
QDG PPG G +
Sbjct: 1885 QDGPPPGLGRV 1895
>sp|O95714|HERC2_HUMAN E3 ubiquitin-protein ligase HERC2 OS=Homo sapiens GN=HERC2 PE=1 SV=2
Length = 4834
Score = 48.5 bits (114), Expect = 1e-05, Method: Composition-based stats.
Identities = 26/67 (38%), Positives = 37/67 (55%), Gaps = 9/67 (13%)
Query: 34 VCEDLGRAAREAEASVRKARR---------LVRTQVMRHLIIGARVQRGLDWKWRDQDGI 84
V ED+ +A+ A A+V + R + ++ + IG RV RG+DWKW DQDG
Sbjct: 1828 VEEDMNASAQGASATVLEETRKETAPVQLPVSGPELAAMMKIGTRVMRGVDWKWGDQDGP 1887
Query: 85 PPGEGNL 91
PPG G +
Sbjct: 1888 PPGLGRV 1894
>sp|Q9VR91|HERC2_DROME Probable E3 ubiquitin-protein ligase HERC2 OS=Drosophila melanogaster
GN=HERC2 PE=1 SV=3
Length = 4912
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 42/71 (59%), Gaps = 10/71 (14%)
Query: 23 SGFEIYGTLTGVCED--LGRAAREAEASVRKARRLVRTQVMRHLIIGARVQRGLDWKWRD 80
+G +++G L+ + ED L + + +A+ S +L++ IG R+ RG DWKW D
Sbjct: 1890 TGGQVHGELSILYEDSVLKQKSSKAQLSGPDLAKLMK--------IGTRIVRGADWKWGD 1941
Query: 81 QDGIPPGEGNL 91
QDG PPGEG +
Sbjct: 1942 QDGNPPGEGRI 1952
>sp|Q9BVR0|HRC23_HUMAN Putative HERC2-like protein 3 OS=Homo sapiens GN=HERC2P3 PE=5 SV=2
Length = 1158
Score = 45.8 bits (107), Expect = 7e-05, Method: Composition-based stats.
Identities = 25/67 (37%), Positives = 36/67 (53%), Gaps = 9/67 (13%)
Query: 34 VCEDLGRAAREAEASVRKARR---------LVRTQVMRHLIIGARVQRGLDWKWRDQDGI 84
V ED+ +A+ A A+V + R + ++ + IG RV RG+DWKW DQD
Sbjct: 556 VEEDMNASAQGASATVLEETRKETAPVQLPVSGPELAAMMKIGTRVMRGVDWKWGDQDRP 615
Query: 85 PPGEGNL 91
PPG G +
Sbjct: 616 PPGLGRV 622
>sp|Q9VUX2|MIB_DROME E3 ubiquitin-protein ligase mind-bomb OS=Drosophila melanogaster
GN=mib1 PE=1 SV=3
Length = 1226
Score = 42.4 bits (98), Expect = 0.001, Method: Composition-based stats.
Identities = 17/39 (43%), Positives = 25/39 (64%)
Query: 45 AEASVRKARRLVRTQVMRHLIIGARVQRGLDWKWRDQDG 83
E ++ + RR + + R + GARV RG+DW+W DQDG
Sbjct: 226 GERTMLEPRRKSKKVLARGIFPGARVVRGVDWQWEDQDG 264
Score = 37.0 bits (84), Expect = 0.032, Method: Composition-based stats.
Identities = 16/26 (61%), Positives = 19/26 (73%), Gaps = 3/26 (11%)
Query: 66 IGARVQRGLDWKWRDQDGIPPGEGNL 91
+GARV RG DWKW QDG GEG++
Sbjct: 108 VGARVIRGPDWKWNKQDG---GEGHV 130
>sp|Q86YT6|MIB1_HUMAN E3 ubiquitin-protein ligase MIB1 OS=Homo sapiens GN=MIB1 PE=1 SV=1
Length = 1006
Score = 38.5 bits (88), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 25/39 (64%)
Query: 45 AEASVRKARRLVRTQVMRHLIIGARVQRGLDWKWRDQDG 83
+E + ++RR + R + GARV RG+DW+W DQDG
Sbjct: 132 SERVLLESRRKSKKITARGIFAGARVVRGVDWQWEDQDG 170
Score = 33.1 bits (74), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 16/29 (55%), Positives = 20/29 (68%), Gaps = 3/29 (10%)
Query: 66 IGARVQRGLDWKWRDQDGIPPGEGNLKPI 94
+GARV RG DWKW QDG GEG++ +
Sbjct: 14 VGARVVRGPDWKWGKQDG---GEGHVGTV 39
>sp|Q80SY4|MIB1_MOUSE E3 ubiquitin-protein ligase MIB1 OS=Mus musculus GN=Mib1 PE=1 SV=1
Length = 1006
Score = 38.5 bits (88), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 25/39 (64%)
Query: 45 AEASVRKARRLVRTQVMRHLIIGARVQRGLDWKWRDQDG 83
+E + ++RR + R + GARV RG+DW+W DQDG
Sbjct: 132 SERVLLESRRKSKKITARGIFAGARVVRGVDWQWEDQDG 170
Score = 33.1 bits (74), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 16/26 (61%), Positives = 19/26 (73%), Gaps = 3/26 (11%)
Query: 66 IGARVQRGLDWKWRDQDGIPPGEGNL 91
+GARV RG DWKW QDG GEG++
Sbjct: 14 VGARVVRGPDWKWGKQDG---GEGHV 36
>sp|Q6GNY1|MIB1_XENLA E3 ubiquitin-protein ligase mib1 OS=Xenopus laevis GN=mib1 PE=2
SV=1
Length = 1011
Score = 38.5 bits (88), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 25/39 (64%)
Query: 45 AEASVRKARRLVRTQVMRHLIIGARVQRGLDWKWRDQDG 83
+E + ++RR + R + GARV RG+DW+W DQDG
Sbjct: 132 SERVLLESRRKSKKITARGIFAGARVVRGVDWQWEDQDG 170
Score = 33.9 bits (76), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 16/29 (55%), Positives = 20/29 (68%), Gaps = 3/29 (10%)
Query: 66 IGARVQRGLDWKWRDQDGIPPGEGNLKPI 94
+GARV RG DWKW QDG GEG++ +
Sbjct: 14 VGARVARGPDWKWGKQDG---GEGHVGTV 39
>sp|Q804S5|MIB1_DANRE E3 ubiquitin-protein ligase mib1 OS=Danio rerio GN=mib1 PE=1 SV=1
Length = 1030
Score = 37.0 bits (84), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 24/39 (61%)
Query: 45 AEASVRKARRLVRTQVMRHLIIGARVQRGLDWKWRDQDG 83
+E + ++RR + R + G RV RG+DW+W DQDG
Sbjct: 132 SERVLLESRRKSKKITARGIFAGGRVVRGVDWQWEDQDG 170
Score = 32.7 bits (73), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 16/29 (55%), Positives = 20/29 (68%), Gaps = 3/29 (10%)
Query: 66 IGARVQRGLDWKWRDQDGIPPGEGNLKPI 94
+GARV RG DWKW QDG GEG++ +
Sbjct: 14 VGARVIRGPDWKWGKQDG---GEGHVGTV 39
>sp|Q5ZIJ9|MIB2_CHICK E3 ubiquitin-protein ligase MIB2 OS=Gallus gallus GN=MIB2 PE=2
SV=1
Length = 954
Score = 35.4 bits (80), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 21/32 (65%), Gaps = 3/32 (9%)
Query: 66 IGARVQRGLDWKWRDQDGIPPGEGNLKPIIMI 97
+G RV RG+DWKW QD GEGN+ ++ I
Sbjct: 11 VGMRVVRGVDWKWGSQDS---GEGNVGTVVEI 39
Score = 30.4 bits (67), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 20/31 (64%), Gaps = 3/31 (9%)
Query: 67 GARVQRGLDWKWRDQDGIPPGEGNLKPIIMI 97
GA+V RG DW+W +QDG GEG ++ I
Sbjct: 160 GAKVVRGPDWEWGNQDG---GEGKTGRVVDI 187
>sp|Q21XI7|TRPA_RHOFD Tryptophan synthase alpha chain OS=Rhodoferax ferrireducens (strain
DSM 15236 / ATCC BAA-621 / T118) GN=trpA PE=3 SV=1
Length = 273
Score = 32.3 bits (72), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 43/88 (48%), Gaps = 9/88 (10%)
Query: 5 RIQQNGKNASGQTHYLSLSGFEIYGTL-TGVCEDLG---RAAREAEASVRKARRLVRT-- 58
R+QQ + ASG +Y+SL G G L TG E + RA + V R T
Sbjct: 170 RMQQVARVASGYVYYVSLKGVTGSGALDTGAVEAMLPRIRAHVQVPVGVGFGIRDAATAR 229
Query: 59 ---QVMRHLIIGARVQRGLDWKWRDQDG 83
QV ++IG+++ + +D + RDQ G
Sbjct: 230 TIGQVADAVVIGSKIIQLIDEQPRDQVG 257
>sp|Q88XZ2|RPOC_LACPL DNA-directed RNA polymerase subunit beta' OS=Lactobacillus
plantarum (strain ATCC BAA-793 / NCIMB 8826 / WCFS1)
GN=rpoC PE=3 SV=1
Length = 1213
Score = 32.3 bits (72), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 34/62 (54%), Gaps = 1/62 (1%)
Query: 37 DLGRAAREAEASVRKARRLVRTQVMRHL-IIGARVQRGLDWKWRDQDGIPPGEGNLKPII 95
DL + AR+ + +++ A RT+ +R L II A V G + W D IP +L+P++
Sbjct: 183 DLEKEARDLKETLKDASGQKRTRAVRRLDIIEAFVTSGNEPAWMVMDAIPVIPPDLRPMV 242
Query: 96 MI 97
+
Sbjct: 243 QL 244
>sp|Q8R516|MIB2_MOUSE E3 ubiquitin-protein ligase MIB2 OS=Mus musculus GN=Mib2 PE=1 SV=2
Length = 973
Score = 31.6 bits (70), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 22/37 (59%), Gaps = 3/37 (8%)
Query: 61 MRHLIIGARVQRGLDWKWRDQDGIPPGEGNLKPIIMI 97
+R + GA+V RG DW+W QDG GEG ++ I
Sbjct: 154 LRGIFQGAKVVRGPDWEWGSQDG---GEGKTGRVVDI 187
Score = 29.6 bits (65), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 11/17 (64%), Positives = 13/17 (76%)
Query: 66 IGARVQRGLDWKWRDQD 82
+G RV RG+DWKW QD
Sbjct: 11 VGMRVVRGMDWKWGQQD 27
>sp|Q68LP1|MIB2_RAT E3 ubiquitin-protein ligase MIB2 OS=Rattus norvegicus GN=Mib2 PE=2
SV=2
Length = 971
Score = 31.6 bits (70), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 22/37 (59%), Gaps = 3/37 (8%)
Query: 61 MRHLIIGARVQRGLDWKWRDQDGIPPGEGNLKPIIMI 97
+R + GA+V RG DW+W QDG GEG ++ I
Sbjct: 154 LRGIFQGAKVVRGPDWEWGSQDG---GEGKTGRVVDI 187
Score = 29.6 bits (65), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 11/17 (64%), Positives = 13/17 (76%)
Query: 66 IGARVQRGLDWKWRDQD 82
+G RV RG+DWKW QD
Sbjct: 11 VGMRVVRGMDWKWGQQD 27
>sp|Q96AX9|MIB2_HUMAN E3 ubiquitin-protein ligase MIB2 OS=Homo sapiens GN=MIB2 PE=1 SV=3
Length = 1013
Score = 31.2 bits (69), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 22/37 (59%), Gaps = 3/37 (8%)
Query: 61 MRHLIIGARVQRGLDWKWRDQDGIPPGEGNLKPIIMI 97
+R + GA+V RG DW+W QDG GEG ++ I
Sbjct: 212 LRGIFQGAKVVRGPDWEWGSQDG---GEGKPGRVVDI 245
Score = 29.3 bits (64), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 11/17 (64%), Positives = 13/17 (76%)
Query: 66 IGARVQRGLDWKWRDQD 82
+G RV RG+DWKW QD
Sbjct: 69 VGMRVVRGVDWKWGQQD 85
>sp|Q04E86|RPOC_OENOB DNA-directed RNA polymerase subunit beta' OS=Oenococcus oeni
(strain ATCC BAA-331 / PSU-1) GN=rpoC PE=3 SV=1
Length = 1233
Score = 30.4 bits (67), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 34/62 (54%), Gaps = 1/62 (1%)
Query: 37 DLGRAAREAEASVRKARRLVRTQVMRHL-IIGARVQRGLDWKWRDQDGIPPGEGNLKPII 95
DL + A+E + ++ A RT+ +R L I+ A +Q G +W D +P +L+P++
Sbjct: 185 DLEKQAKELKNELKDATGQKRTRAVRRLDIVEAFIQSGNKPEWMVMDVVPVIPPDLRPMV 244
Query: 96 MI 97
+
Sbjct: 245 QL 246
>sp|P95405|RPOC_OENOE DNA-directed RNA polymerase subunit beta' (Fragment) OS=Oenococcus
oeni GN=rpoC PE=3 SV=1
Length = 1004
Score = 30.0 bits (66), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 34/62 (54%), Gaps = 1/62 (1%)
Query: 37 DLGRAAREAEASVRKARRLVRTQVMRHL-IIGARVQRGLDWKWRDQDGIPPGEGNLKPII 95
DL + A+E + ++ A RT+ +R L I+ A +Q G +W D +P +L+P++
Sbjct: 118 DLEKHAKELKNELKDATGQKRTRAVRRLDIVEAFIQSGNKPEWMVMDVVPVIPPDLRPMV 177
Query: 96 MI 97
+
Sbjct: 178 QL 179
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.322 0.139 0.433
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 36,039,025
Number of Sequences: 539616
Number of extensions: 1133093
Number of successful extensions: 2926
Number of sequences better than 100.0: 26
Number of HSP's better than 100.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 2898
Number of HSP's gapped (non-prelim): 35
length of query: 98
length of database: 191,569,459
effective HSP length: 67
effective length of query: 31
effective length of database: 155,415,187
effective search space: 4817870797
effective search space used: 4817870797
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)