Query psy15026
Match_columns 98
No_of_seqs 121 out of 140
Neff 3.2
Searched_HMMs 29240
Date Fri Aug 16 18:30:44 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15026.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/15026hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3dkm_A E3 ubiquitin-protein li 99.7 3.7E-18 1.3E-22 117.0 3.1 42 53-94 11-52 (89)
2 2dk3_A E3 ubiquitin-protein li 99.7 2.2E-17 7.6E-22 112.6 2.0 39 56-94 8-46 (86)
3 3f2z_A Uncharacterized protein 92.2 0.15 5E-06 34.2 3.8 31 2-34 122-152 (159)
4 3ggl_A Putative chitobiase; X- 90.0 0.32 1.1E-05 33.1 3.8 31 2-34 132-162 (169)
5 3cqo_A FBP32; F-lectin, fucole 87.0 0.31 1.1E-05 36.0 2.2 25 2-31 123-147 (293)
6 2jda_A Yecbm32; hypothetical p 85.8 0.59 2E-05 30.0 2.9 27 2-31 111-137 (145)
7 2yfu_A Carbohydrate binding fa 52.1 4.5 0.00015 28.6 0.9 30 1-36 116-145 (155)
8 1k3i_A Galactose oxidase precu 47.0 16 0.00055 29.1 3.5 28 2-31 139-166 (656)
9 4a4a_A Alpha-N-acetylglucosami 45.0 10 0.00036 34.0 2.3 30 2-34 128-157 (914)
10 3mr0_A Sensory box histidine k 40.3 59 0.002 19.5 5.8 39 12-55 90-138 (142)
11 1k12_A Lectin; beta barrel, pr 37.8 11 0.00038 25.5 1.1 14 18-31 141-154 (158)
12 3lei_A Platelet aggregation fa 33.4 16 0.00054 24.4 1.2 13 19-31 135-147 (153)
13 1tvg_A LOC51668 protein; cell 30.3 28 0.00096 24.1 2.2 27 2-32 122-148 (153)
14 4evu_A Putative periplasmic pr 29.2 23 0.0008 22.6 1.5 24 20-45 23-46 (72)
15 3k44_A Purine-rich binding pro 26.6 25 0.00087 25.2 1.4 24 2-25 28-51 (146)
16 4gwi_A Lectinolysin, platelet 26.0 27 0.00091 23.8 1.4 13 19-31 135-147 (153)
No 1
>3dkm_A E3 ubiquitin-protein ligase hectd1; UBL conjugation, UBL conjugation pathway, structural genomics consortium, SGC;, ANK repeat, NPPSFA; 1.60A {Homo sapiens} SCOP: b.34.19.1
Probab=99.70 E-value=3.7e-18 Score=117.00 Aligned_cols=42 Identities=52% Similarity=0.940 Sum_probs=39.6
Q ss_pred hhhHHHHhhhhccccceEeeCCCCcccCCCCCCCCCCeeeee
Q psy15026 53 RRLVRTQVMRHLIIGARVQRGLDWKWRDQDGIPPGEGNLKPI 94 (98)
Q Consensus 53 R~~~r~~~~~~i~~G~RVvRG~DWkW~dQDGg~g~~GtV~~~ 94 (98)
|.+++.|++++|++|+||||||||+|+||||++|++|||+++
T Consensus 11 ~~~~~~q~lk~i~vG~RVVRGpDWkWgdQDGg~g~~GtV~~~ 52 (89)
T 3dkm_A 11 RENLYFQGLKYMVPGARVTRGLDWKWRDQDGSPQGEGTVTGE 52 (89)
T ss_dssp CCCHHHHHHHHCSTTCEEEECTTCCCTTTTSSTTCCEEECSC
T ss_pred hHHHHHHHhhccccCcEEEeCCCCcccccCCCCCcccEEeEe
Confidence 667899999999999999999999999999999999999874
No 2
>2dk3_A E3 ubiquitin-protein ligase hectd1; MIB-HERC2 domain, HECT domain containing protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.34.19.1
Probab=99.65 E-value=2.2e-17 Score=112.63 Aligned_cols=39 Identities=62% Similarity=1.136 Sum_probs=35.9
Q ss_pred HHHHhhhhccccceEeeCCCCcccCCCCCCCCCCeeeee
Q psy15026 56 VRTQVMRHLIIGARVQRGLDWKWRDQDGIPPGEGNLKPI 94 (98)
Q Consensus 56 ~r~~~~~~i~~G~RVvRG~DWkW~dQDGg~g~~GtV~~~ 94 (98)
+|.++++.|++|+||||||||||+||||++|++|||+++
T Consensus 8 ~r~~~~~~i~vG~rVVRG~DWkWgdQDGG~G~~GtV~~~ 46 (86)
T 2dk3_A 8 VRSQVLKYMVPGARVIRGLDWKWRDQDGSPQGEGTVTGE 46 (86)
T ss_dssp CSSCGGGTCCTTSEEEECTTCCSCCTTCSSCCCEEBCSC
T ss_pred hhhhhhhccccCCEEEeCCCCcccccCCCCCcceEEEEE
Confidence 456667999999999999999999999999999999975
No 3
>3f2z_A Uncharacterized protein BF3579; the present C-terminal domain is predominantly composed of B strands., structural genomics, PSI-2; 1.30A {Bacteroides fragilis} PDB: 2kd7_A
Probab=92.23 E-value=0.15 Score=34.22 Aligned_cols=31 Identities=13% Similarity=0.335 Sum_probs=24.0
Q ss_pred eeEEEeecCCCCCCceeeEEeeceEEEeccchh
Q psy15026 2 RHVRIQQNGKNASGQTHYLSLSGFEIYGTLTGV 34 (98)
Q Consensus 2 r~~ri~q~g~nss~~~~yls~sgfe~yg~v~~~ 34 (98)
||+||.-......+ .|++|+-|+|||...+.
T Consensus 122 RYVRi~~~~~~~~~--~~~si~Ei~vy~~~~~~ 152 (159)
T 3f2z_A 122 RYIKLVIPDGVGNG--TVAAIRELDVRGTVVNL 152 (159)
T ss_dssp EEEEEEECSSSSCC--SCCEEEEEEEEEEECC-
T ss_pred EEEEEEEEeccCCC--ceEEEEEEEEEcCCCCc
Confidence 89999887654322 48999999999987665
No 4
>3ggl_A Putative chitobiase; X-RAY, structure genomics, NESG, BTR324A, Q8A9F0_bactn, BT_0865, PSI-2, protein structure initiative; 3.00A {Bacteroides thetaiotaomicron}
Probab=89.99 E-value=0.32 Score=33.13 Aligned_cols=31 Identities=13% Similarity=0.350 Sum_probs=23.8
Q ss_pred eeEEEeecCCCCCCceeeEEeeceEEEeccchh
Q psy15026 2 RHVRIQQNGKNASGQTHYLSLSGFEIYGTLTGV 34 (98)
Q Consensus 2 r~~ri~q~g~nss~~~~yls~sgfe~yg~v~~~ 34 (98)
||+||.-...+.. . .|++|+-|+|||.-.+.
T Consensus 132 RYVRi~~~~~~~~-~-~~~si~Ei~vy~~~~~~ 162 (169)
T 3ggl_A 132 RYIRLTIPDDGGN-S-TVAAIRELDVKGTIINL 162 (169)
T ss_dssp EEEEEEECSSSSC-C-SCCEEEEEEEEEEECC-
T ss_pred EEEEEEEEeCCCC-C-ceEEEEEEEEEcCCCCc
Confidence 8999988765432 2 59999999999986554
No 5
>3cqo_A FBP32; F-lectin, fucolectin, sugar binding protein; HET: FUC; 2.32A {Morone saxatilis}
Probab=86.97 E-value=0.31 Score=36.00 Aligned_cols=25 Identities=32% Similarity=0.409 Sum_probs=21.1
Q ss_pred eeEEEeecCCCCCCceeeEEeeceEEEecc
Q psy15026 2 RHVRIQQNGKNASGQTHYLSLSGFEIYGTL 31 (98)
Q Consensus 2 r~~ri~q~g~nss~~~~yls~sgfe~yg~v 31 (98)
||+||.-.|.+ .+|+|+-||+||.-
T Consensus 123 RYVrv~~~~~~-----~~~sl~EveVyg~~ 147 (293)
T 3cqo_A 123 RYVTVLLPGTN-----KVLTLCEVEVHGYR 147 (293)
T ss_dssp EEEEEECCSSS-----BCCCCSEEEEEEEE
T ss_pred eEEEEEecCCC-----cceEEEEEEEEecc
Confidence 89999987653 38999999999973
No 6
>2jda_A Yecbm32; hypothetical protein, carbohydrate- binding module, sugar-binding protein, pectin, plant cell WALL, galacturonic acid; 1.35A {Yersinia enterocolitica} PDB: 2jd9_A
Probab=85.81 E-value=0.59 Score=29.96 Aligned_cols=27 Identities=7% Similarity=0.340 Sum_probs=21.9
Q ss_pred eeEEEeecCCCCCCceeeEEeeceEEEecc
Q psy15026 2 RHVRIQQNGKNASGQTHYLSLSGFEIYGTL 31 (98)
Q Consensus 2 r~~ri~q~g~nss~~~~yls~sgfe~yg~v 31 (98)
||+||.-.+.+.. .+++|.-|||||.-
T Consensus 111 ryvRi~~~~~~~~---~~~~i~Ei~v~g~~ 137 (145)
T 2jda_A 111 KYIKLDTFGTDVN---NWSAINEIAINSAA 137 (145)
T ss_dssp EEEEEEEEEESSS---SEEEEEEEEESCCC
T ss_pred EEEEEEEECCCCC---cEeEEEEEEEECCC
Confidence 8999998876542 37899999999974
No 7
>2yfu_A Carbohydrate binding family 6; sugar binding protein; 1.65A {Clostridium thermocellum} PDB: 2y8j_A* 2y9i_A* 2y9s_A 2yb7_A* 2y8m_A 2yfz_A* 2yg0_A*
Probab=52.13 E-value=4.5 Score=28.65 Aligned_cols=30 Identities=20% Similarity=0.313 Sum_probs=21.5
Q ss_pred CeeEEEeecCCCCCCceeeEEeeceEEEeccchhhh
Q psy15026 1 WRHVRIQQNGKNASGQTHYLSLSGFEIYGTLTGVCE 36 (98)
Q Consensus 1 ~r~~ri~q~g~nss~~~~yls~sgfe~yg~v~~~~E 36 (98)
|||+|....-. .|.+++-+|+|+......+
T Consensus 116 yRYiRy~~p~~------~~~niAEi~fy~~~~~~~~ 145 (155)
T 2yfu_A 116 FRYVRYLSPDG------SNGNIAELQFFGTPAGEEN 145 (155)
T ss_dssp ESEEEEECCTT------STTCBSEEEEEEEECC---
T ss_pred EEEEEEEcCCC------CeEEEEEEEEEeccccccc
Confidence 68999876542 4789999999988766653
No 8
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=46.98 E-value=16 Score=29.09 Aligned_cols=28 Identities=14% Similarity=0.280 Sum_probs=22.6
Q ss_pred eeEEEeecCCCCCCceeeEEeeceEEEecc
Q psy15026 2 RHVRIQQNGKNASGQTHYLSLSGFEIYGTL 31 (98)
Q Consensus 2 r~~ri~q~g~nss~~~~yls~sgfe~yg~v 31 (98)
||+||.-...... ..|++++-|++||.-
T Consensus 139 RyvRi~~~~~~~~--~~~~si~E~~v~~~~ 166 (656)
T 1k3i_A 139 RYVRLVAITEANG--QPWTSIAEINVFQAS 166 (656)
T ss_dssp EEEEEEECSBTTS--CSCCEESEEEEEECS
T ss_pred EEEEEEEeccccc--CCceeEEEEEEeecc
Confidence 8999998775433 358999999999975
No 9
>4a4a_A Alpha-N-acetylglucosaminidase family protein; hydrolase, 2 hydrolase, family 89 glycoside hydrolase, mucin carbohydrate-active enzyme; HET: NDG GAL; 1.90A {Clostridium perfringens} PDB: 2vcc_A 2vc9_A* 2vcb_A* 2vca_A
Probab=45.03 E-value=10 Score=33.96 Aligned_cols=30 Identities=17% Similarity=0.386 Sum_probs=23.0
Q ss_pred eeEEEeecCCCCCCceeeEEeeceEEEeccchh
Q psy15026 2 RHVRIQQNGKNASGQTHYLSLSGFEIYGTLTGV 34 (98)
Q Consensus 2 r~~ri~q~g~nss~~~~yls~sgfe~yg~v~~~ 34 (98)
||+||.-.+... . .+.||+-|||||+-.+.
T Consensus 128 RYVRL~~t~~~~--~-~~~SI~EfeVyG~~~g~ 157 (914)
T 4a4a_A 128 GKIRIDVVQNSN--S-DRVNIAEINVFGKNTGE 157 (914)
T ss_dssp EEEEEEEEEETT--C-SSCEESEEEEEEEECSC
T ss_pred EEEEEEEEecCC--C-CceEEEEEEEEcCCCCC
Confidence 899998764332 2 47899999999987665
No 10
>3mr0_A Sensory box histidine kinase/response regulator; PAS fold, structural genomics, PSI-2; HET: PG5; 1.49A {Burkholderia thailandensis}
Probab=40.33 E-value=59 Score=19.53 Aligned_cols=39 Identities=21% Similarity=0.380 Sum_probs=23.3
Q ss_pred CCCCceeeEEeeceE----------EEeccchhhhhhhhhhHhhhhHHHHhhhh
Q psy15026 12 NASGQTHYLSLSGFE----------IYGTLTGVCEDLGRAAREAEASVRKARRL 55 (98)
Q Consensus 12 nss~~~~yls~sgfe----------~yg~v~~~~Ed~~k~a~~ae~~l~~~R~~ 55 (98)
..+|+..++.+.|.- +.|.+.++.|. |.++..+.+.+..
T Consensus 90 ~~~G~~~w~~~~~~~~~d~~g~~~~~~G~~~DITer-----k~~E~~L~~~~~~ 138 (142)
T 3mr0_A 90 TRSGDFRWIQSRGQALWNSAGEPYRMVGWIMDVTDR-----KRDEDALRVSREE 138 (142)
T ss_dssp CTTSCEEEEEEEEEEEECTTSCEEEEEEEEEECHHH-----HHHHHHHHHHHHH
T ss_pred CCCCCEEEEEEEEEEEECCCCCEEEEEEEEEcCchH-----HHHHHHHHHHHHH
Confidence 456777788777654 44566666655 5555555554443
No 11
>1k12_A Lectin; beta barrel, protein carbohydrate complex, sugar binding protein; HET: FUC; 1.90A {Anguilla anguilla} SCOP: b.18.1.15
Probab=37.76 E-value=11 Score=25.46 Aligned_cols=14 Identities=21% Similarity=0.135 Sum_probs=11.4
Q ss_pred eeEEeeceEEEecc
Q psy15026 18 HYLSLSGFEIYGTL 31 (98)
Q Consensus 18 ~yls~sgfe~yg~v 31 (98)
.+|+|+-|||||..
T Consensus 141 ~~lsl~EveVyg~~ 154 (158)
T 1k12_A 141 ESLHLCEVEVNVDK 154 (158)
T ss_dssp SCCCEEEEEEEEEE
T ss_pred CeEEEEEEEEeccc
Confidence 46888999999964
No 12
>3lei_A Platelet aggregation factor SM-HPAF; lectin domain of lectinolysin, fucose, blood clotting, nicke; HET: FUC; 1.90A {Streptococcus mitis} PDB: 3leg_A* 3le0_A* 3lek_A*
Probab=33.44 E-value=16 Score=24.38 Aligned_cols=13 Identities=31% Similarity=0.478 Sum_probs=11.6
Q ss_pred eEEeeceEEEecc
Q psy15026 19 YLSLSGFEIYGTL 31 (98)
Q Consensus 19 yls~sgfe~yg~v 31 (98)
+|+|+-|||||..
T Consensus 135 ~~sl~EveVyg~~ 147 (153)
T 3lei_A 135 PLSLAEVEVFRSA 147 (153)
T ss_dssp CCCEEEEEEEEBC
T ss_pred cEEEEEEEEEcCc
Confidence 7899999999975
No 13
>1tvg_A LOC51668 protein; cell cycle, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 1.60A {Homo sapiens} SCOP: b.18.1.9 PDB: 1xpw_A
Probab=30.28 E-value=28 Score=24.12 Aligned_cols=27 Identities=22% Similarity=0.261 Sum_probs=20.6
Q ss_pred eeEEEeecCCCCCCceeeEEeeceEEEeccc
Q psy15026 2 RHVRIQQNGKNASGQTHYLSLSGFEIYGTLT 32 (98)
Q Consensus 2 r~~ri~q~g~nss~~~~yls~sgfe~yg~v~ 32 (98)
||+||.=. ++.++|.++--+++||.-+
T Consensus 122 ~~lRl~i~----s~~d~fv~Iy~l~v~G~~~ 148 (153)
T 1tvg_A 122 TYLRFIIV----SAFDHFASVHSVSAEGTVV 148 (153)
T ss_dssp EEEEEEEE----EESSSCCEEEEEEEEEEEE
T ss_pred EEEEEEEE----cccccEEEEEEEEEEEEEc
Confidence 67777666 5556789999999999654
No 14
>4evu_A Putative periplasmic protein YDGH; structural genomics, PSI-biology, program for the characteri secreted effector proteins, pcsep; HET: MSE; 1.45A {Salmonella enterica subsp}
Probab=29.17 E-value=23 Score=22.65 Aligned_cols=24 Identities=21% Similarity=0.511 Sum_probs=18.6
Q ss_pred EEeeceEEEeccchhhhhhhhhhHhh
Q psy15026 20 LSLSGFEIYGTLTGVCEDLGRAAREA 45 (98)
Q Consensus 20 ls~sgfe~yg~v~~~~Ed~~k~a~~a 45 (98)
+|+||+ ||.-.++.++|.|.|.+.
T Consensus 23 Vsvsg~--~~sp~D~~~~lskkAdek 46 (72)
T 4evu_A 23 VKFTGN--YGNMTEISYQVAKRAAKK 46 (72)
T ss_dssp EEEEEC--CSSHHHHHHHHHHHHHHT
T ss_pred EEECCc--cCChHHHHHHHHHHHHHc
Confidence 677885 788888888888887653
No 15
>3k44_A Purine-rich binding protein-alpha, isoform B; PUR-alpha, PUR repeat, PUR domain, whirly fold, DNA binding protein, RNA binding protein; 2.10A {Drosophila melanogaster}
Probab=26.59 E-value=25 Score=25.16 Aligned_cols=24 Identities=25% Similarity=0.468 Sum_probs=17.5
Q ss_pred eeEEEeecCCCCCCceeeEEeece
Q psy15026 2 RHVRIQQNGKNASGQTHYLSLSGF 25 (98)
Q Consensus 2 r~~ri~q~g~nss~~~~yls~sgf 25 (98)
||+||.|.|.|...++--|+++|.
T Consensus 28 rfLkIsE~~~~g~rs~I~lp~~~~ 51 (146)
T 3k44_A 28 RFIKVAEIGADGRRSQIYLALSTA 51 (146)
T ss_dssp EEEEEEEECTTCCEEEEEECHHHH
T ss_pred EEEEEEEecCCCcceEEEEEhhHH
Confidence 788899988776666666666664
No 16
>4gwi_A Lectinolysin, platelet aggregation factor SM-HPAF; cholesterol-dependent cytolysins, lewis antigens, F-type LEC glycan binding; HET: BDZ; 1.60A {Streptococcus mitis} PDB: 4gwj_A* 3lei_A* 3leg_A* 3le0_A* 3lek_A*
Probab=25.98 E-value=27 Score=23.82 Aligned_cols=13 Identities=31% Similarity=0.478 Sum_probs=11.6
Q ss_pred eEEeeceEEEecc
Q psy15026 19 YLSLSGFEIYGTL 31 (98)
Q Consensus 19 yls~sgfe~yg~v 31 (98)
+|||.=|||||.-
T Consensus 135 ~lsL~EveVyg~~ 147 (153)
T 4gwi_A 135 PLSLAEVEVFRSA 147 (153)
T ss_dssp CCCEEEEEEEEBC
T ss_pred ceEEEEEEEECcc
Confidence 8999999999974
Done!