RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy15026
         (98 letters)



>d2dk3a1 b.34.19.1 (A:8-80) E3 ubiquitin-protein ligase hectd1
          {Human (Homo sapiens) [TaxId: 9606]}
          Length = 73

 Score = 54.3 bits (131), Expect = 4e-12
 Identities = 24/34 (70%), Positives = 30/34 (88%)

Query: 56 VRTQVMRHLIIGARVQRGLDWKWRDQDGIPPGEG 89
          VR+QV+++++ GARV RGLDWKWRDQDG P GEG
Sbjct: 1  VRSQVLKYMVPGARVIRGLDWKWRDQDGSPQGEG 34


>d1k12a_ b.18.1.15 (A:) Fucose binding lectin {European eel
           (Anguilla anguilla) [TaxId: 7936]}
          Length = 158

 Score = 29.0 bits (64), Expect = 0.054
 Identities = 5/28 (17%), Positives = 7/28 (25%), Gaps = 6/28 (21%)

Query: 2   RHVRIQQNGKNASGQTHYLSLSGFEIYG 29
           R+V               L L   E+  
Sbjct: 131 RYVVTYLPTSE------SLHLCEVEVNV 152


>d1w8oa2 b.18.1.1 (A:506-647) Sialidase, C-terminal domain
           {Micromonospora viridifaciens [TaxId: 1881]}
          Length = 142

 Score = 28.4 bits (62), Expect = 0.11
 Identities = 5/29 (17%), Positives = 13/29 (44%), Gaps = 2/29 (6%)

Query: 2   RHVRIQQNGKNASGQTHYLSLSGFEIYGT 30
           R++R+     +      Y +++  E+ G 
Sbjct: 115 RYIRLV--ALSEQTGHKYAAVAELEVEGQ 141


>d1sr8a_ e.54.1.1 (A:) Cobalamin biosynthesis protein CbiD {Archaeon
           Archaeoglobus fulgidus [TaxId: 2234]}
          Length = 282

 Score = 25.5 bits (56), Expect = 1.1
 Identities = 13/59 (22%), Positives = 20/59 (33%), Gaps = 2/59 (3%)

Query: 42  AREAEASVRKARRLVRTQVMRHLIIGARVQRGLDWKWRDQDGIPPGE--GNLKPIIMII 98
           A +  A VRK        V   +I  A V       +    G+  GE   +    + I+
Sbjct: 82  AEKGFARVRKFSGDHEFDVTNGIIFEAEVCETSGIFFGRGVGVKAGEKAVSRSAKLQIL 140


>d1b5la_ a.26.1.3 (A:) Interferon-tau {Sheep (Ovis aries) [TaxId:
           9940]}
          Length = 164

 Score = 24.8 bits (54), Expect = 1.6
 Identities = 8/23 (34%), Positives = 14/23 (60%)

Query: 52  ARRLVRTQVMRHLIIGARVQRGL 74
           A  +VR ++MR L +   +Q+ L
Sbjct: 140 AWEIVRVEMMRALTVSTTLQKRL 162


>d1xa6a2 d.93.1.1 (A:21-161) Beta-chimaerin, N-terminal domain
           {Human (Homo sapiens) [TaxId: 9606]}
          Length = 141

 Score = 24.2 bits (52), Expect = 3.0
 Identities = 5/21 (23%), Positives = 12/21 (57%)

Query: 2   RHVRIQQNGKNASGQTHYLSL 22
            + R+  +GK+  G+  + S+
Sbjct: 81  LNYRLFHDGKHFVGEKRFESI 101


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.322    0.139    0.433 

Gapped
Lambda     K      H
   0.267   0.0686    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 385,708
Number of extensions: 14886
Number of successful extensions: 49
Number of sequences better than 10.0: 1
Number of HSP's gapped: 49
Number of HSP's successfully gapped: 9
Length of query: 98
Length of database: 2,407,596
Length adjustment: 60
Effective length of query: 38
Effective length of database: 1,583,796
Effective search space: 60184248
Effective search space used: 60184248
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 47 (22.0 bits)