Query psy15027
Match_columns 314
No_of_seqs 126 out of 1438
Neff 7.0
Searched_HMMs 46136
Date Fri Aug 16 18:31:19 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15027.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/15027hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0165 ArgH Argininosuccinate 100.0 4.6E-64 9.9E-69 486.4 26.7 261 45-305 198-458 (459)
2 KOG1316|consensus 100.0 1.3E-60 2.8E-65 440.6 20.7 260 45-305 201-460 (464)
3 PLN02646 argininosuccinate lya 100.0 9.8E-60 2.1E-64 467.2 28.0 260 46-305 212-471 (474)
4 PRK06705 argininosuccinate lya 100.0 3.3E-56 7.2E-61 444.7 29.1 268 46-313 205-480 (502)
5 TIGR00838 argH argininosuccina 100.0 4.2E-56 9.1E-61 440.6 28.5 258 47-304 197-454 (455)
6 PRK04833 argininosuccinate lya 100.0 4.2E-56 9E-61 440.0 27.4 256 47-302 199-454 (455)
7 PRK00855 argininosuccinate lya 100.0 5.9E-55 1.3E-59 432.6 27.7 258 47-304 201-458 (459)
8 cd01359 Argininosuccinate_lyas 100.0 1.7E-53 3.7E-58 420.0 27.7 257 47-303 177-434 (435)
9 PRK12308 bifunctional arginino 100.0 4E-53 8.7E-58 433.1 27.6 261 46-306 198-458 (614)
10 PRK02186 argininosuccinate lya 100.0 6.7E-50 1.4E-54 424.2 27.8 258 46-312 605-864 (887)
11 PRK08540 adenylosuccinate lyas 100.0 4.8E-49 1E-53 389.6 24.7 256 33-303 186-447 (449)
12 PRK07492 adenylosuccinate lyas 100.0 4.5E-47 9.8E-52 373.3 23.7 247 33-298 180-433 (435)
13 PRK08470 adenylosuccinate lyas 100.0 6.8E-47 1.5E-51 373.1 23.0 247 33-297 177-441 (442)
14 PRK07380 adenylosuccinate lyas 100.0 2.4E-46 5.3E-51 367.8 23.9 246 33-296 177-429 (431)
15 PRK09053 3-carboxy-cis,cis-muc 100.0 2.7E-46 5.9E-51 370.2 23.8 251 33-300 191-447 (452)
16 cd01597 pCLME prokaryotic 3-ca 100.0 4.9E-46 1.1E-50 367.1 24.3 248 34-298 183-436 (437)
17 PRK06390 adenylosuccinate lyas 100.0 2.1E-45 4.5E-50 363.7 24.5 257 34-306 186-448 (451)
18 COG0015 PurB Adenylosuccinate 100.0 5.5E-45 1.2E-49 354.0 21.5 252 31-297 179-436 (438)
19 TIGR00928 purB adenylosuccinat 100.0 1.3E-44 2.7E-49 356.9 21.2 241 42-295 187-434 (435)
20 cd03302 Adenylsuccinate_lyase_ 100.0 8.9E-44 1.9E-48 350.5 21.6 230 41-278 185-433 (436)
21 PRK06389 argininosuccinate lya 100.0 4.1E-43 8.9E-48 342.5 21.6 195 45-243 191-386 (434)
22 PRK12273 aspA aspartate ammoni 100.0 8.7E-43 1.9E-47 346.1 23.0 209 58-280 250-463 (472)
23 PRK13353 aspartate ammonia-lya 100.0 7.8E-42 1.7E-46 339.4 23.2 217 50-280 233-461 (473)
24 cd01360 Adenylsuccinate_lyase_ 100.0 6.7E-42 1.4E-46 332.8 19.9 194 34-238 175-374 (387)
25 cd01595 Adenylsuccinate_lyase_ 100.0 1.8E-41 3.9E-46 329.3 18.5 191 41-238 178-375 (381)
26 cd01357 Aspartase Aspartase. T 100.0 7.6E-41 1.7E-45 330.7 22.8 203 58-274 243-450 (450)
27 PRK00485 fumC fumarate hydrata 100.0 1.4E-40 3.1E-45 330.0 21.1 214 50-279 233-460 (464)
28 PRK12425 fumarate hydratase; P 100.0 2.3E-40 4.9E-45 327.9 22.4 207 59-279 247-458 (464)
29 TIGR00979 fumC_II fumarate hyd 100.0 2.5E-39 5.3E-44 320.2 22.3 207 59-279 246-457 (458)
30 PLN00134 fumarate hydratase; P 100.0 5.4E-39 1.2E-43 317.8 21.8 217 50-280 225-453 (458)
31 PRK08937 adenylosuccinate lyas 100.0 5.6E-39 1.2E-43 288.9 19.7 188 89-279 22-215 (216)
32 cd01362 Fumarase_classII Class 100.0 6.6E-39 1.4E-43 317.1 21.6 228 34-277 221-454 (455)
33 PRK09285 adenylosuccinate lyas 100.0 3.1E-39 6.7E-44 319.2 18.4 239 34-296 205-455 (456)
34 cd01596 Aspartase_like asparta 100.0 2E-38 4.3E-43 313.2 22.4 224 35-274 221-450 (450)
35 TIGR00839 aspA aspartate ammon 100.0 3.5E-38 7.5E-43 312.4 22.7 208 58-280 246-459 (468)
36 PRK14515 aspartate ammonia-lya 100.0 4.1E-38 8.8E-43 312.3 19.9 216 50-280 239-467 (479)
37 cd01598 PurB PurB_like adenylo 100.0 8.2E-36 1.8E-40 292.2 17.8 192 41-241 188-388 (425)
38 PLN02848 adenylosuccinate lyas 100.0 2.9E-35 6.4E-40 290.7 19.0 234 41-295 213-457 (458)
39 cd01334 Lyase_I Lyase class I 100.0 8.9E-35 1.9E-39 276.9 15.3 154 47-200 170-325 (325)
40 TIGR02426 protocat_pcaB 3-carb 100.0 1.2E-31 2.5E-36 256.7 14.0 154 33-197 182-338 (338)
41 PRK05975 3-carboxy-cis,cis-muc 100.0 8.2E-31 1.8E-35 251.8 14.3 155 32-199 190-347 (351)
42 COG0114 FumC Fumarase [Energy 100.0 1E-29 2.3E-34 240.0 19.9 205 58-280 247-460 (462)
43 COG1027 AspA Aspartate ammonia 100.0 8.6E-30 1.9E-34 240.0 18.1 208 58-279 249-461 (471)
44 KOG2700|consensus 100.0 1.7E-28 3.7E-33 234.2 20.1 255 40-306 197-468 (481)
45 PF00206 Lyase_1: Lyase; Inte 99.9 1.7E-25 3.6E-30 212.2 7.2 100 50-149 205-312 (312)
46 KOG1317|consensus 99.9 2E-23 4.3E-28 192.7 10.1 204 58-279 272-484 (487)
47 cd01594 Lyase_I_like Lyase cla 99.8 9.7E-18 2.1E-22 151.4 13.2 109 82-190 121-230 (231)
48 PF14698 ASL_C2: Argininosucci 99.6 7.5E-15 1.6E-19 109.5 7.4 69 212-280 1-69 (70)
49 PF10397 ADSL_C: Adenylosuccin 99.3 1.1E-11 2.4E-16 94.9 6.9 81 210-297 1-81 (81)
50 PF08328 ASL_C: Adenylosuccina 98.2 1.2E-05 2.6E-10 64.9 9.3 76 164-241 2-80 (115)
51 PF10415 FumaraseC_C: Fumarase 97.6 9E-05 1.9E-09 52.6 4.6 53 215-280 2-54 (55)
52 COG3937 Uncharacterized conser 76.6 27 0.00057 28.1 8.5 81 215-312 26-107 (108)
53 PF14748 P5CR_dimer: Pyrroline 72.3 26 0.00057 27.8 7.8 31 213-243 22-52 (107)
54 KOG2700|consensus 66.2 6.2 0.00013 39.3 3.5 33 121-153 326-358 (481)
55 PF01978 TrmB: Sugar-specific 52.1 16 0.00034 26.2 2.8 41 199-242 8-49 (68)
56 PRK07634 pyrroline-5-carboxyla 50.0 64 0.0014 28.8 7.1 75 198-294 161-242 (245)
57 TIGR00112 proC pyrroline-5-car 41.4 1.5E+02 0.0033 26.8 8.2 47 195-241 136-189 (245)
58 COG0345 ProC Pyrroline-5-carbo 34.3 3.9E+02 0.0085 24.9 10.8 54 189-242 147-207 (266)
59 PF12643 MazG-like: MazG-like 33.7 1.6E+02 0.0035 23.2 6.1 56 184-242 17-72 (98)
60 COG0497 RecN ATPase involved i 33.7 3.1E+02 0.0068 28.5 9.7 63 174-241 269-332 (557)
61 PF03861 ANTAR: ANTAR domain; 33.6 1.3E+02 0.0029 20.7 5.1 31 221-254 21-52 (56)
62 PHA02675 ORF104 fusion protein 33.6 46 0.00099 25.6 2.8 47 175-233 41-87 (90)
63 PTZ00431 pyrroline carboxylate 32.5 1.2E+02 0.0026 27.8 6.0 52 190-241 144-202 (260)
64 KOG3915|consensus 32.2 37 0.00081 34.2 2.7 8 125-132 291-298 (641)
65 PF05924 SAMP: SAMP Motif; In 29.1 16 0.00034 20.4 -0.2 9 125-133 11-19 (20)
66 TIGR01837 PHA_granule_1 poly(h 29.0 2.5E+02 0.0054 22.7 6.7 30 215-244 24-54 (118)
67 COG3799 Mal Methylaspartate am 29.0 55 0.0012 31.3 3.1 43 199-241 358-400 (410)
68 COG2718 Uncharacterized conser 28.9 36 0.00079 33.5 2.0 16 11-26 90-105 (423)
69 cd04444 DEP_PLEK2 DEP (Disheve 28.3 1.5E+02 0.0032 24.0 5.0 56 186-241 5-62 (109)
70 PRK12491 pyrroline-5-carboxyla 28.0 1.6E+02 0.0035 27.3 6.1 46 196-241 157-209 (272)
71 PRK10590 ATP-dependent RNA hel 27.6 51 0.0011 32.8 2.9 27 15-41 394-420 (456)
72 COG1378 Predicted transcriptio 25.5 98 0.0021 28.5 4.1 44 196-242 13-57 (247)
73 PHA00370 III attachment protei 25.5 84 0.0018 29.3 3.5 48 80-130 170-217 (297)
74 PHA00370 III attachment protei 24.2 2.8E+02 0.0061 25.9 6.6 19 83-101 180-198 (297)
75 TIGR02877 spore_yhbH sporulati 22.9 61 0.0013 31.8 2.3 12 53-64 112-123 (371)
76 smart00550 Zalpha Z-DNA-bindin 22.5 1.5E+02 0.0032 21.3 3.8 38 201-241 8-48 (68)
77 PRK14127 cell division protein 22.1 1.9E+02 0.0041 23.4 4.6 28 284-311 19-46 (109)
78 PF07328 VirD1: T-DNA border e 21.3 4.5E+02 0.0098 22.1 6.7 108 52-189 11-128 (147)
79 COG2854 Ttg2D ABC-type transpo 21.2 3.6E+02 0.0078 24.2 6.7 73 231-306 28-105 (202)
80 PF09904 HTH_43: Winged helix- 21.2 68 0.0015 25.0 1.8 22 219-240 24-46 (90)
81 KOG4212|consensus 21.0 57 0.0012 32.7 1.7 56 33-91 510-565 (608)
82 PF02022 Integrase_Zn: Integra 20.4 92 0.002 20.4 2.1 20 220-239 13-33 (40)
No 1
>COG0165 ArgH Argininosuccinate lyase [Amino acid transport and metabolism]
Probab=100.00 E-value=4.6e-64 Score=486.41 Aligned_cols=261 Identities=49% Similarity=0.808 Sum_probs=256.1
Q ss_pred ccccCCCCccccHHHHHHHcCCCCCCCCcchhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceeeccCCCCCC
Q psy15027 45 ENGGGGTTHPIDRYRTTELLHFDSPSGNSLDSISDRDFIIEFLSHCSITIMHLSRISEEFIIFMNPQFDYVSLPDSLLTG 124 (314)
Q Consensus 45 ~aA~~gt~~~idr~~la~~LGf~~~~~ns~d~~~~RD~~~e~~~~la~la~~L~kiA~Dl~l~ss~e~gei~lp~~~~~G 124 (314)
+||++||++||||+++|++|||+.+..|++|++++||+++|+++++++++.+|||||+|+++|+|+|||+|.+|+++++|
T Consensus 198 agAlaGt~~~iDR~~tA~lLGF~~~~~Nsldavs~Rdf~le~l~~~s~~~~~LSRlaedlI~wss~EfgfI~l~D~~sTG 277 (459)
T COG0165 198 AGALAGTPFPIDRERTAELLGFDAVTRNSLDAVSDRDFILEFLSAAALIMVHLSRLAEDLILWSSPEFGFIELPDEFSTG 277 (459)
T ss_pred ccccCCCCCCCCHHHHHHHcCCchhhcCchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccCceEeCCcccccc
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCChhHHHHHHHHHhhhhhhHHHHHHHHhcCcccccchhhhcchhHHHHHHHHHHHHHHHHhchhcceechhhh
Q psy15027 125 SSIMPQKKNPDILELIRGKTGRVYGNLFNMLTIMKSQPLAYNKDMQECKQPLVDSIETLNMCLTAFKLILDNVKFNTGRM 204 (314)
Q Consensus 125 SSiMPqKrNP~~~E~ir~~a~~v~g~~~~~l~~~~~~~~~~~rDl~~~~~~L~~~~~~~~~~l~~~~~~l~~l~vn~erm 204 (314)
||||||||||+++|+||+++++++|.+.+++++++++|+.||||+|++++++++++..+..+|..|..++++|+||+++|
T Consensus 278 SSIMPQKKNPD~~ELiRgk~grv~G~l~~ll~~~k~lPlaYnrDlQedke~lfds~~t~~~~l~~~~~mv~~l~vn~e~~ 357 (459)
T COG0165 278 SSIMPQKKNPDVLELIRGKAGRVIGALTGLLTIMKGLPLAYNRDLQEDKEPLFDSVDTLEDSLRVLAGMVSGLTVNKERM 357 (459)
T ss_pred cccCCCCCCCcHHHHHHHhhhhhHHHHHHHHHHHhcCcccccHHHHhhhHHHHHHHHHHHHHHHHHHHHHccCeeCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhccchhHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCChhHhhHHHHHhcccCCHHHHhhcCChhHhhhcccC
Q psy15027 205 YVSAGEGFSIATDIADYLAKKKIPFRSCHEIVGKIIKFCVQEAKPLDQLSLEELKAIHEDIGEDIFEILSVEKSVEHKDH 284 (314)
Q Consensus 205 ~~~l~~~~~~at~la~~L~~~Gi~~r~Ah~~v~~~v~~a~~~g~~l~e~~~~~~~~~~~~~~~~l~~~ldp~~~v~~r~~ 284 (314)
++.+..+|+++|++|++|+++|+|||+||++|+++|+.+.+.|+++.++..++.+.+..+.++++.++++|+..|+.|.+
T Consensus 358 ~~a~~~gfs~aTdlAd~lv~kGvPFReAh~ivG~~v~~~~~~~~~l~~l~~~~~~~~~~~~~~dv~~~l~~~~~v~~R~~ 437 (459)
T COG0165 358 REAAEAGFSTATDLADYLVRKGVPFREAHEIVGEAVRRAEERGKDLADLSLEELQSISPLIDEDVYEVLTPEESVAKRNS 437 (459)
T ss_pred HHHhhcccchHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCCCHHhccHHHHhhhccccchHHHHHhchHHHHHHhhc
Confidence 99999999999999999999999999999999999999999999999999999888888899999999999999999999
Q ss_pred CCCCcHHHHHHHHHHHHHHHH
Q psy15027 285 VGATAPSQVQHSVDVFENFVK 305 (314)
Q Consensus 285 ~gG~a~~~v~~~i~~~~~~l~ 305 (314)
+||++|++|++.|++++..++
T Consensus 438 ~Ggtap~~v~~~i~~~~~~l~ 458 (459)
T COG0165 438 EGGTAPEEVREAIARAKARLA 458 (459)
T ss_pred cCCCCHHHHHHHHHHHHHhhc
Confidence 999999999999999998774
No 2
>KOG1316|consensus
Probab=100.00 E-value=1.3e-60 Score=440.58 Aligned_cols=260 Identities=40% Similarity=0.637 Sum_probs=253.9
Q ss_pred ccccCCCCccccHHHHHHHcCCCCCCCCcchhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceeeccCCCCCC
Q psy15027 45 ENGGGGTTHPIDRYRTTELLHFDSPSGNSLDSISDRDFIIEFLSHCSITIMHLSRISEEFIIFMNPQFDYVSLPDSLLTG 124 (314)
Q Consensus 45 ~aA~~gt~~~idr~~la~~LGf~~~~~ns~d~~~~RD~~~e~~~~la~la~~L~kiA~Dl~l~ss~e~gei~lp~~~~~G 124 (314)
.+|++|++++|||+.+++.|||+.+..|++++++.||+++||..|.++++.+|+|+|+|+++|++.||||+.+.+++.+|
T Consensus 201 agALAGnpl~iDR~~la~~LgF~~v~~NSm~AvsDRDFVvef~fw~sm~m~HlSRlaEdlIiy~t~EF~Fv~lSDaySTG 280 (464)
T KOG1316|consen 201 AGALAGNPLGIDREFLAEELGFEGVIMNSMDAVSDRDFVVEFLFWASMVMTHLSRLAEDLIIYSTKEFGFVTLSDAYSTG 280 (464)
T ss_pred cchhcCCCCCccHHHHHHhcCCcccchhhhhccccchhHHHHHHHHHHHHHHHHHHhhHhheeeccccCceeeccccccC
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCChhHHHHHHHHHhhhhhhHHHHHHHHhcCcccccchhhhcchhHHHHHHHHHHHHHHHHhchhcceechhhh
Q psy15027 125 SSIMPQKKNPDILELIRGKTGRVYGNLFNMLTIMKSQPLAYNKDMQECKQPLVDSIETLNMCLTAFKLILDNVKFNTGRM 204 (314)
Q Consensus 125 SSiMPqKrNP~~~E~ir~~a~~v~g~~~~~l~~~~~~~~~~~rDl~~~~~~L~~~~~~~~~~l~~~~~~l~~l~vn~erm 204 (314)
||+|||||||+.+|++|+++++|.|.+.++++.++.+|+.||+|+|++|+++++++..+..++...+.++.+|+||+++|
T Consensus 281 SSlMPQKKNpDslELlRgksgrV~gdl~g~lmt~KG~PstYnkDlQeDKep~Fds~~tv~~~l~v~tgv~stltvn~e~m 360 (464)
T KOG1316|consen 281 SSLMPQKKNPDSLELLRGKSGRVFGDLTGLLMTLKGLPSTYNKDLQEDKEPLFDSSKTVSDSLQVATGVISTLTVNQENM 360 (464)
T ss_pred cccCCCCCCCCHHHHhccccceehhhhHHHHHHhcCCccccccchhhhhhHHHhhHHHHHHHHHHHHHHhhheeECHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhccchhHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCChhHhhHHHHHhcccCCHHHHhhcCChhHhhhcccC
Q psy15027 205 YVSAGEGFSIATDIADYLAKKKIPFRSCHEIVGKIIKFCVQEAKPLDQLSLEELKAIHEDIGEDIFEILSVEKSVEHKDH 284 (314)
Q Consensus 205 ~~~l~~~~~~at~la~~L~~~Gi~~r~Ah~~v~~~v~~a~~~g~~l~e~~~~~~~~~~~~~~~~l~~~ldp~~~v~~r~~ 284 (314)
.+.+...+ +||++|+|||++|+|||++|+|++++|..|.+.|.++.++.+++++.+.+++++|+...++.++.|++|..
T Consensus 361 ~~aLt~dm-lATdlA~YLVrKGvPFRqtHhisG~~V~~ae~rg~~l~~LsledlqklsplF~eDv~~v~~ye~sVek~~a 439 (464)
T KOG1316|consen 361 EKALTPDM-LATDLAYYLVRKGVPFRQTHHISGKAVRMAEERGVTLDKLSLEDLQKLSPLFEEDVFCVFNYENSVEKRCA 439 (464)
T ss_pred hhccCchh-hHhHHHHHHHHcCCCchhhhhhhHHHHHHHHHcCCCcccCCHHHHhhcCcccccchHHhhchhhhHHHhhc
Confidence 99998855 79999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcHHHHHHHHHHHHHHHH
Q psy15027 285 VGATAPSQVQHSVDVFENFVK 305 (314)
Q Consensus 285 ~gG~a~~~v~~~i~~~~~~l~ 305 (314)
+||++...|.++|+.++..|.
T Consensus 440 ~GgTa~s~V~eQl~~~k~al~ 460 (464)
T KOG1316|consen 440 IGGTAKSCVLEQLRQLKKALL 460 (464)
T ss_pred cCCchHHHHHHHHHHHHHHHH
Confidence 999999999999999987553
No 3
>PLN02646 argininosuccinate lyase
Probab=100.00 E-value=9.8e-60 Score=467.21 Aligned_cols=260 Identities=43% Similarity=0.694 Sum_probs=251.9
Q ss_pred cccCCCCccccHHHHHHHcCCCCCCCCcchhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceeeccCCCCCCC
Q psy15027 46 NGGGGTTHPIDRYRTTELLHFDSPSGNSLDSISDRDFIIEFLSHCSITIMHLSRISEEFIIFMNPQFDYVSLPDSLLTGS 125 (314)
Q Consensus 46 aA~~gt~~~idr~~la~~LGf~~~~~ns~d~~~~RD~~~e~~~~la~la~~L~kiA~Dl~l~ss~e~gei~lp~~~~~GS 125 (314)
+|++|+++++||+++|++|||..|..|++||+++||+++|+++++++++.+|+|||+||++|+++||||+.+|+.+++||
T Consensus 212 ga~aGt~~~idr~~~A~~LGf~~~~~n~~da~~~RD~~~e~~~~la~ia~~LsRia~Dl~l~ss~e~g~v~~~d~~~~GS 291 (474)
T PLN02646 212 CALAGTGLPIDRFMTAKDLGFTAPMRNSIDAVSDRDFVLEFLFANSITAIHLSRLGEEWVLWASEEFGFVTPSDAVSTGS 291 (474)
T ss_pred hhhcCCCCCCCHHHHHHHhCCCCCCCChHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCeeeeCCCCCCCc
Confidence 66777889999999999999999999999999999999999999999999999999999999999999999998889999
Q ss_pred CCCCCCCChhHHHHHHHHHhhhhhhHHHHHHHHhcCcccccchhhhcchhHHHHHHHHHHHHHHHHhchhcceechhhhH
Q psy15027 126 SIMPQKKNPDILELIRGKTGRVYGNLFNMLTIMKSQPLAYNKDMQECKQPLVDSIETLNMCLTAFKLILDNVKFNTGRMY 205 (314)
Q Consensus 126 SiMPqKrNP~~~E~ir~~a~~v~g~~~~~l~~~~~~~~~~~rDl~~~~~~L~~~~~~~~~~l~~~~~~l~~l~vn~erm~ 205 (314)
|||||||||+++|++|+++++++|+...++.+++++|++|+||+|.+|..+++++..+..+|..+..+|++|+||+++|+
T Consensus 292 SiMPqKrNP~~~E~ir~~a~~v~G~~~~~~~~~~~~p~~~~rD~q~~~~~l~~~~~~~~~~l~~~~~~l~~l~v~~~rm~ 371 (474)
T PLN02646 292 SIMPQKKNPDPMELVRGKSARVIGDLVTVLALCKGLPTAYNRDLQEDKEPLFDSVDTVSDMLEVATEFAQNITFNPERIK 371 (474)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHhhhHHHHHHhcCCchHhhcchhhHHHHHHHHHHHHHHHHHHHHHHHccCEECHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhccchhHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCChhHhhHHHHHhcccCCHHHHhhcCChhHhhhcccCC
Q psy15027 206 VSAGEGFSIATDIADYLAKKKIPFRSCHEIVGKIIKFCVQEAKPLDQLSLEELKAIHEDIGEDIFEILSVEKSVEHKDHV 285 (314)
Q Consensus 206 ~~l~~~~~~at~la~~L~~~Gi~~r~Ah~~v~~~v~~a~~~g~~l~e~~~~~~~~~~~~~~~~l~~~ldp~~~v~~r~~~ 285 (314)
+++..+++++|+++++|+++|+|||+||++|+++|+.|.++|+++.++..++.+.+...+++++.+++||+++|++|.++
T Consensus 372 ~~l~~~~~~At~la~~Lv~~Gi~fr~Ah~iV~~~v~~a~~~g~~l~~l~~~~~~~~~~~~~~~~~~~l~~~~~v~~r~~~ 451 (474)
T PLN02646 372 KSLPAGMLDATTLADYLVRKGVPFRETHHIVGAAVALAESKGCELSDLTLEDLKSINPVFEEDVYEVLGVENSVEKFDSY 451 (474)
T ss_pred HHHHcCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHhcccchHHHHHhCCHHHHHHHccCC
Confidence 99999999999999999999999999999999999999999999999999888877777889999999999999999999
Q ss_pred CCCcHHHHHHHHHHHHHHHH
Q psy15027 286 GATAPSQVQHSVDVFENFVK 305 (314)
Q Consensus 286 gG~a~~~v~~~i~~~~~~l~ 305 (314)
|||+|++|+++|+++++.++
T Consensus 452 Gg~~p~~v~~~~~~~~~~l~ 471 (474)
T PLN02646 452 GSTGSRSVLEQLEKWRTKLE 471 (474)
T ss_pred CCCCHHHHHHHHHHHHHHhh
Confidence 99999999999999988775
No 4
>PRK06705 argininosuccinate lyase; Provisional
Probab=100.00 E-value=3.3e-56 Score=444.70 Aligned_cols=268 Identities=22% Similarity=0.378 Sum_probs=250.9
Q ss_pred cccCCCCccccHHHHHHHcCCCCCCCCcchhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceeeccCCCCCCC
Q psy15027 46 NGGGGTTHPIDRYRTTELLHFDSPSGNSLDSISDRDFIIEFLSHCSITIMHLSRISEEFIIFMNPQFDYVSLPDSLLTGS 125 (314)
Q Consensus 46 aA~~gt~~~idr~~la~~LGf~~~~~ns~d~~~~RD~~~e~~~~la~la~~L~kiA~Dl~l~ss~e~gei~lp~~~~~GS 125 (314)
+|++|++|++||+++|++|||+.|..|+++++++||+++|+++++++++++|+|||+|+++|+++|||+|++|+.+++||
T Consensus 205 aag~gt~~~~~r~~~a~~LGf~~~~~ns~~a~~~rD~~~e~~~~la~~~~~L~Ria~Dl~~~ss~e~g~iel~e~~~~gS 284 (502)
T PRK06705 205 AALSTTSFPIKRERVADLLGFTNVIENSYDAVAGADYLLEVSSLLMVMMTNTSRWIHDFLLLATKEYDGITVARPYVQIS 284 (502)
T ss_pred hhhccCCchHHHHHHHHHcCCCCCcCCHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCeeeecCCCCCcc
Confidence 34556678999999999999999988998888999999999999999999999999999999999999999999889999
Q ss_pred CCCCCCCChhHHHHHHHHHhhhhhhHHHHHHHHhcCcccccchhhhc-chhHHHHHHHHHHHHHHHHhchhcceechhhh
Q psy15027 126 SIMPQKKNPDILELIRGKTGRVYGNLFNMLTIMKSQPLAYNKDMQEC-KQPLVDSIETLNMCLTAFKLILDNVKFNTGRM 204 (314)
Q Consensus 126 SiMPqKrNP~~~E~ir~~a~~v~g~~~~~l~~~~~~~~~~~rDl~~~-~~~L~~~~~~~~~~l~~~~~~l~~l~vn~erm 204 (314)
|||||||||+++|+||++++++.|++.+++.++++.|..|++|++.+ ++.+++++..+..+|..+..+|++|+||++||
T Consensus 285 SiMPqKrNP~~~E~ir~~a~~~~g~~~~~l~~~~~~~~~~~~d~q~~~~~~~~~~~~~~~~~l~~~~~~l~~l~v~~~rm 364 (502)
T PRK06705 285 SIMPQKRNPVSIEHARAITSSALGEAFTVFQMIHNTPFGDIVDTEDDLQPYLYKGIEKAIRVFCIMNAVIRTMKVEEDTL 364 (502)
T ss_pred CCCCCCcCCHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhhhhhHhhhhhHHHHHHHHHHHHHHHHHHHHCcCEECHHHH
Confidence 99999999999999999999999999999999999999999998766 67899999999999999999999999999999
Q ss_pred HHhhccchhHHHHHHHHHHHc-CCChHHHHHHHHHHHHHHHHcCCChhHhhHHHHHh-----c-ccCCHHHHhhcCChhH
Q psy15027 205 YVSAGEGFSIATDIADYLAKK-KIPFRSCHEIVGKIIKFCVQEAKPLDQLSLEELKA-----I-HEDIGEDIFEILSVEK 277 (314)
Q Consensus 205 ~~~l~~~~~~at~la~~L~~~-Gi~~r~Ah~~v~~~v~~a~~~g~~l~e~~~~~~~~-----~-~~~~~~~l~~~ldp~~ 277 (314)
++++..+++++|+++++|+++ |+|||+||++|+++++.+.++|+++.++..+++.. + ..++++++..++||+.
T Consensus 365 ~~~~~~g~~~At~la~~Lv~~~Gl~fr~Ah~iV~~~v~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~ldp~~ 444 (502)
T PRK06705 365 KRRSYKHAITITDFADVLTKNYGIPFRHAHHAASVIANMSLEQKKELHELCFKDVNIYLQEKFKIQLLEKEWEEIISPEA 444 (502)
T ss_pred HHHHhcCchHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCCHHHhhHHHHHhhhhhhhhhcCCHHHHHHHCCHHH
Confidence 999999999999999999999 99999999999999999999999999998877642 1 3355788999999999
Q ss_pred hhhcccCCCCCcHHHHHHHHHHHHHHHHHHHHhhhh
Q psy15027 278 SVEHKDHVGATAPSQVQHSVDVFENFVKDMTDLLKT 313 (314)
Q Consensus 278 ~v~~r~~~gG~a~~~v~~~i~~~~~~l~~~~~~~~~ 313 (314)
++.+|.++|||+|+.|++++++++.+++.++.|++.
T Consensus 445 ~v~~r~~~Gg~~p~~v~~~~~~~~~~~~~~~~~~~~ 480 (502)
T PRK06705 445 FIQKRNVYGGPSKKEMERMINNRKELFRKEEEVFEK 480 (502)
T ss_pred HHhhccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999998888863
No 5
>TIGR00838 argH argininosuccinate lyase. This model describes argininosuccinate lyase, but may include examples of avian delta crystallins, in which argininosuccinate lyase activity may or may not be present and the biological role is to provide the optically clear cellular protein of the eye lens.
Probab=100.00 E-value=4.2e-56 Score=440.56 Aligned_cols=258 Identities=47% Similarity=0.766 Sum_probs=246.3
Q ss_pred ccCCCCccccHHHHHHHcCCCCCCCCcchhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceeeccCCCCCCCC
Q psy15027 47 GGGGTTHPIDRYRTTELLHFDSPSGNSLDSISDRDFIIEFLSHCSITIMHLSRISEEFIIFMNPQFDYVSLPDSLLTGSS 126 (314)
Q Consensus 47 A~~gt~~~idr~~la~~LGf~~~~~ns~d~~~~RD~~~e~~~~la~la~~L~kiA~Dl~l~ss~e~gei~lp~~~~~GSS 126 (314)
|++|+++++||+++|+.|||..+..|++||+++||++++++++++.++++|+|||+|+++|+++|||||.+|+.+++|||
T Consensus 197 a~aGt~~~~~r~~~a~~LG~~~~~~n~~~a~~~rd~~~e~~~~l~~~a~~L~ria~Dl~l~ss~e~gei~lp~~~~~GSS 276 (455)
T TIGR00838 197 ALAGTGFPIDREYLAELLGFDAVTENSLDAVSDRDFILELLFVAALIMVHLSRFAEDLILWSTGEFGFVELPDEFSSGSS 276 (455)
T ss_pred cccCCCCCCCHHHHHHHcCCCCCcCCHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCeeeCCCCCCCccC
Confidence 56667889999999999999999999999999999999999999999999999999999999999999999998899999
Q ss_pred CCCCCCChhHHHHHHHHHhhhhhhHHHHHHHHhcCcccccchhhhcchhHHHHHHHHHHHHHHHHhchhcceechhhhHH
Q psy15027 127 IMPQKKNPDILELIRGKTGRVYGNLFNMLTIMKSQPLAYNKDMQECKQPLVDSIETLNMCLTAFKLILDNVKFNTGRMYV 206 (314)
Q Consensus 127 iMPqKrNP~~~E~ir~~a~~v~g~~~~~l~~~~~~~~~~~rDl~~~~~~L~~~~~~~~~~l~~~~~~l~~l~vn~erm~~ 206 (314)
||||||||+.+|+++++++++.|+...++.+++++|++||+|++..+..+++++..+..++..+..+|++|+||+++|++
T Consensus 277 iMP~K~NP~~~E~i~~~a~~~~g~~~~~~~~~~~~~~~~~rd~~~~~~~l~~~~~~~~~al~~~~~~i~~l~v~~~rm~~ 356 (455)
T TIGR00838 277 IMPQKKNPDVAELIRGKTGRVQGNLTGMLMTLKALPLAYNRDLQEDKEPLFDALKTVELSLEMATGMLDTITVNKERMEE 356 (455)
T ss_pred CCCCCcCChHHHHHHHHHHHHhhhHHHHHHHHhcCChHhhhhhHhhHHHHHHHHHHHHHHHHHHHHHHccCEECHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhccchhHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCChhHhhHHHHHhcccCCHHHHhhcCChhHhhhcccCCC
Q psy15027 207 SAGEGFSIATDIADYLAKKKIPFRSCHEIVGKIIKFCVQEAKPLDQLSLEELKAIHEDIGEDIFEILSVEKSVEHKDHVG 286 (314)
Q Consensus 207 ~l~~~~~~at~la~~L~~~Gi~~r~Ah~~v~~~v~~a~~~g~~l~e~~~~~~~~~~~~~~~~l~~~ldp~~~v~~r~~~g 286 (314)
++..+++++|+++++|+++|+|||+||++|+++++.+.++|+++.++..++...+...+++++++++||+.++++|.++|
T Consensus 357 ~~~~~~~~at~la~~Lv~~g~~~r~Ah~~v~~~~~~a~~~g~~l~~~~~~~~~~~~~~~~~~l~~~ldp~~~v~~r~~~G 436 (455)
T TIGR00838 357 AASAGFSNATELADYLVRKGVPFREAHHIVGELVATAIERGKGLEELTLEELQKFSPEFDEDVYEALDPESSVEKRDAKG 436 (455)
T ss_pred HHHcCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhhhcccCHHHHHHHCCHHHHHHhccCCC
Confidence 99999999999999999999999999999999999999999999999988765445566778999999999999999999
Q ss_pred CCcHHHHHHHHHHHHHHH
Q psy15027 287 ATAPSQVQHSVDVFENFV 304 (314)
Q Consensus 287 G~a~~~v~~~i~~~~~~l 304 (314)
||+|+.|.+++++++..+
T Consensus 437 g~~~~~~~~~~~~~~~~~ 454 (455)
T TIGR00838 437 GTAPEEVLQAIAEAKARL 454 (455)
T ss_pred CCCHHHHHHHHHHHHHhc
Confidence 999999999999887754
No 6
>PRK04833 argininosuccinate lyase; Provisional
Probab=100.00 E-value=4.2e-56 Score=439.97 Aligned_cols=256 Identities=43% Similarity=0.711 Sum_probs=245.6
Q ss_pred ccCCCCccccHHHHHHHcCCCCCCCCcchhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceeeccCCCCCCCC
Q psy15027 47 GGGGTTHPIDRYRTTELLHFDSPSGNSLDSISDRDFIIEFLSHCSITIMHLSRISEEFIIFMNPQFDYVSLPDSLLTGSS 126 (314)
Q Consensus 47 A~~gt~~~idr~~la~~LGf~~~~~ns~d~~~~RD~~~e~~~~la~la~~L~kiA~Dl~l~ss~e~gei~lp~~~~~GSS 126 (314)
|++||++++||+++|++|||..|..|++|++++||+++|+++++++++++|+|||+|+++|+++|||++++|+++++|||
T Consensus 199 A~~GT~~~~dr~~~a~~LGf~~~~~n~~~a~~~rd~~~e~~~~l~~~a~~L~ria~Dl~l~ss~e~g~~el~~~~~~gSS 278 (455)
T PRK04833 199 ALAGTAYEIDREQLAGWLGFASATRNSLDSVSDRDHVLELLSDASISMVHLSRFAEDLIFFNSGEAGFVELSDRVTSGSS 278 (455)
T ss_pred ccccCCCCCCHHHHHHHhCCCCCCCCHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCceeeCCCCCCCcc
Confidence 45678889999999999999999999999999999999999999999999999999999999999999999988899999
Q ss_pred CCCCCCChhHHHHHHHHHhhhhhhHHHHHHHHhcCcccccchhhhcchhHHHHHHHHHHHHHHHHhchhcceechhhhHH
Q psy15027 127 IMPQKKNPDILELIRGKTGRVYGNLFNMLTIMKSQPLAYNKDMQECKQPLVDSIETLNMCLTAFKLILDNVKFNTGRMYV 206 (314)
Q Consensus 127 iMPqKrNP~~~E~ir~~a~~v~g~~~~~l~~~~~~~~~~~rDl~~~~~~L~~~~~~~~~~l~~~~~~l~~l~vn~erm~~ 206 (314)
||||||||+.+|+++++++++.|+..+++.+++++|++|+||++.++..+++++..+..++..+..+|++|+||+++|++
T Consensus 279 iMPqKrNP~~~E~ir~~a~~~~g~~~~~~~~~~~~~~~~~rd~~~~~~~l~~~~~~~~~~l~~~~~~l~~l~v~~~rm~~ 358 (455)
T PRK04833 279 LMPQKKNPDALELIRGKCGRVQGALTGMLMTLKGLPLAYNKDMQEDKEGLFDALDTWLDCLHMAALVLDGIQVKRPRCQE 358 (455)
T ss_pred cCCCCCCChHHHHHHHHHHHHHhhHHHHHHHHhCChHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhCeECHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhccchhHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCChhHhhHHHHHhcccCCHHHHhhcCChhHhhhcccCCC
Q psy15027 207 SAGEGFSIATDIADYLAKKKIPFRSCHEIVGKIIKFCVQEAKPLDQLSLEELKAIHEDIGEDIFEILSVEKSVEHKDHVG 286 (314)
Q Consensus 207 ~l~~~~~~at~la~~L~~~Gi~~r~Ah~~v~~~v~~a~~~g~~l~e~~~~~~~~~~~~~~~~l~~~ldp~~~v~~r~~~g 286 (314)
++..++++++++++.|+++|+|||+||++|+++++.+.++|+++.++..++.+.+...+++++.+++||+++|++|.++|
T Consensus 359 ~~~~g~~~a~~~a~~L~~~g~~~r~Ah~~v~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~v~~r~~~G 438 (455)
T PRK04833 359 AAQQGYANATELADYLVAKGVPFREAHHIVGEAVVEAIRQGKPLEDLPLAELQKFSSVIGDDVYPILSLQSCLDKRAAKG 438 (455)
T ss_pred HHHccHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCCChhhcCHHHHHHhcccchHHHHHhCCHHHHHHhccCCC
Confidence 99999999999999999999999999999999999999999999999988877666667888999999999999999999
Q ss_pred CCcHHHHHHHHHHHHH
Q psy15027 287 ATAPSQVQHSVDVFEN 302 (314)
Q Consensus 287 G~a~~~v~~~i~~~~~ 302 (314)
|++|+.|.+++++++.
T Consensus 439 g~~~~~v~~~~~~~~~ 454 (455)
T PRK04833 439 GVSPQQVAQAIAAAKA 454 (455)
T ss_pred CCCHHHHHHHHHHHhh
Confidence 9999999999988765
No 7
>PRK00855 argininosuccinate lyase; Provisional
Probab=100.00 E-value=5.9e-55 Score=432.65 Aligned_cols=258 Identities=52% Similarity=0.836 Sum_probs=246.8
Q ss_pred ccCCCCccccHHHHHHHcCCCCCCCCcchhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceeeccCCCCCCCC
Q psy15027 47 GGGGTTHPIDRYRTTELLHFDSPSGNSLDSISDRDFIIEFLSHCSITIMHLSRISEEFIIFMNPQFDYVSLPDSLLTGSS 126 (314)
Q Consensus 47 A~~gt~~~idr~~la~~LGf~~~~~ns~d~~~~RD~~~e~~~~la~la~~L~kiA~Dl~l~ss~e~gei~lp~~~~~GSS 126 (314)
|++|+++++||+++|++|||..+..|++||+++||++++++++++.++.+|+|||+|+++|+++|||||.+|+.+++|||
T Consensus 201 ag~gt~~~~~r~~~a~~LG~~~~~~n~~~a~~~rd~~~e~~~~l~~la~~L~ria~Dl~l~ss~e~gei~~p~~~~~gSS 280 (459)
T PRK00855 201 ALAGTTFPIDRERTAELLGFDGVTENSLDAVSDRDFALEFLSAASLLMVHLSRLAEELILWSSQEFGFVELPDAFSTGSS 280 (459)
T ss_pred hhcCCCCCcCHHHHHHHcCCCCCCCCHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCCCeEeCCCCCCCCcC
Confidence 44577899999999999999999999999999999999999999999999999999999999999999999998899999
Q ss_pred CCCCCCChhHHHHHHHHHhhhhhhHHHHHHHHhcCcccccchhhhcchhHHHHHHHHHHHHHHHHhchhcceechhhhHH
Q psy15027 127 IMPQKKNPDILELIRGKTGRVYGNLFNMLTIMKSQPLAYNKDMQECKQPLVDSIETLNMCLTAFKLILDNVKFNTGRMYV 206 (314)
Q Consensus 127 iMPqKrNP~~~E~ir~~a~~v~g~~~~~l~~~~~~~~~~~rDl~~~~~~L~~~~~~~~~~l~~~~~~l~~l~vn~erm~~ 206 (314)
||||||||+.+|++++++.++.|+...++.+++++|++|+||+++.+..+++++..+..++..+..++++|+||+++|++
T Consensus 281 iMPqK~NP~~~E~i~~~a~~~~g~~~~~~~~~~~~~~~~~rD~~~~~~~l~~~~~~~~~al~~~~~~l~~l~v~~~~m~~ 360 (459)
T PRK00855 281 IMPQKKNPDVAELIRGKTGRVYGNLTGLLTVMKGLPLAYNRDLQEDKEPLFDAVDTLKLSLEAMAGMLETLTVNKERMRE 360 (459)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHhhHHHHHHHhcCchHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHccCEECHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhccchhHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCChhHhhHHHHHhcccCCHHHHhhcCChhHhhhcccCCC
Q psy15027 207 SAGEGFSIATDIADYLAKKKIPFRSCHEIVGKIIKFCVQEAKPLDQLSLEELKAIHEDIGEDIFEILSVEKSVEHKDHVG 286 (314)
Q Consensus 207 ~l~~~~~~at~la~~L~~~Gi~~r~Ah~~v~~~v~~a~~~g~~l~e~~~~~~~~~~~~~~~~l~~~ldp~~~v~~r~~~g 286 (314)
++..+++++|++++.|+++|+|||+||++|+++++.+.++|+++.++..+.++.+....++++.+++||+++|++|.+.|
T Consensus 361 ~l~~~~~~at~la~~Lv~~gi~~r~Ah~~v~~~~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~r~~~G 440 (459)
T PRK00855 361 AAGKGFSTATDLADYLVRKGVPFREAHEIVGKAVREAEERGVDLADLSLEELQAFSPLITEDVYEVLTPEGSVAARNSIG 440 (459)
T ss_pred HHHcchhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhCCCHHHHhHHHHHHhcccchHHHHHHhChHHHHHhcCCCC
Confidence 99999999999999999999999999999999999999999999999988877665566888999999999999999999
Q ss_pred CCcHHHHHHHHHHHHHHH
Q psy15027 287 ATAPSQVQHSVDVFENFV 304 (314)
Q Consensus 287 G~a~~~v~~~i~~~~~~l 304 (314)
||+|+.+++++++++.++
T Consensus 441 g~~~~~~~~~~~~~~~~~ 458 (459)
T PRK00855 441 GTAPEQVREQIARAKARL 458 (459)
T ss_pred CCCHHHHHHHHHHHHhhc
Confidence 999999999999887764
No 8
>cd01359 Argininosuccinate_lyase Argininosuccinate lyase (argininosuccinase, ASAL). This group contains ASAL and related proteins. It is a member of the Lyase class I family. Members of this family for the most part catalyze similar beta-elimination reactions in which a C-N or C-O bond is cleaved with the release of fumarate as one of the products. These proteins are active as tetramers. The four active sites of the homotetrameric enzyme are each formed by residues from three different subunits. ASAL is a cytosolic enzyme which catalyzes the reversible breakdown of argininosuccinate to arginine and fumarate during arginine biosynthesis. In ureotelic species ASAL also catalyzes a reaction involved in the production of urea. Included in this group are the major soluble avian eye lens proteins from duck, delta 1 and delta 2 crystallin. Of these two isoforms only delta 2 has retained ASAL activity. These crystallins may have evolved by, gene recruitment of ASAL followed by gene duplication.
Probab=100.00 E-value=1.7e-53 Score=420.04 Aligned_cols=257 Identities=49% Similarity=0.798 Sum_probs=244.2
Q ss_pred ccCCCCccccHHHHHHHcCCCCCCCCcchhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceeeccCCCCCCCC
Q psy15027 47 GGGGTTHPIDRYRTTELLHFDSPSGNSLDSISDRDFIIEFLSHCSITIMHLSRISEEFIIFMNPQFDYVSLPDSLLTGSS 126 (314)
Q Consensus 47 A~~gt~~~idr~~la~~LGf~~~~~ns~d~~~~RD~~~e~~~~la~la~~L~kiA~Dl~l~ss~e~gei~lp~~~~~GSS 126 (314)
+++|+++++||+++|++|||+.+..|+++++++||++++++++++.++++|+|||+|+++|+++|||||.+|+.+++|||
T Consensus 177 ag~gt~~~~~~~~~a~~LG~~~~~~~~~~a~~~rd~~~e~~~~l~~~a~~l~ria~Dl~l~~~~e~gev~lpe~~~~GSS 256 (435)
T cd01359 177 ALAGTTFPIDRERTAELLGFDGPTENSLDAVSDRDFVLEFLSAAALLMVHLSRLAEDLILWSTQEFGFVELPDAYSTGSS 256 (435)
T ss_pred cccCCCCCCCHHHHHHHcCCCCCccCHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCeeeCCCCCCCccc
Confidence 45577788999999999999999999888889999999999999999999999999999999999999999988889999
Q ss_pred CCCCCCChhHHHHHHHHHhhhhhhHHHHHHHHhcCcccccchhhhcchhHHHHHHHHHHHHHHHHhchhcceechhhhHH
Q psy15027 127 IMPQKKNPDILELIRGKTGRVYGNLFNMLTIMKSQPLAYNKDMQECKQPLVDSIETLNMCLTAFKLILDNVKFNTGRMYV 206 (314)
Q Consensus 127 iMPqKrNP~~~E~ir~~a~~v~g~~~~~l~~~~~~~~~~~rDl~~~~~~L~~~~~~~~~~l~~~~~~l~~l~vn~erm~~ 206 (314)
||||||||+.+|+++++++++.|....++.++.++|++|++|++..|..+++++..+..++..+..+|++|+||+++|++
T Consensus 257 ~MP~KrNP~~~E~i~~~a~~~~g~~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~~al~~~~~~l~~l~v~~~~m~~ 336 (435)
T cd01359 257 IMPQKKNPDVLELIRGKAGRVIGALAGLLTTLKGLPLAYNKDLQEDKEPLFDAVDTLIASLRLLTGVISTLTVNPERMRE 336 (435)
T ss_pred cCCCCCCCcHHHHHHHHHHHHhhHHhHHHHHhcCCCCccchhHHHhhHHHHHHHHHHHHHHHHHHHHHhhCEECHHHHHH
Confidence 99999999999999999999999999999999888999999999999999999999999999999999999999999999
Q ss_pred hhccchhHHHHHHHHHHH-cCCChHHHHHHHHHHHHHHHHcCCChhHhhHHHHHhcccCCHHHHhhcCChhHhhhcccCC
Q psy15027 207 SAGEGFSIATDIADYLAK-KKIPFRSCHEIVGKIIKFCVQEAKPLDQLSLEELKAIHEDIGEDIFEILSVEKSVEHKDHV 285 (314)
Q Consensus 207 ~l~~~~~~at~la~~L~~-~Gi~~r~Ah~~v~~~v~~a~~~g~~l~e~~~~~~~~~~~~~~~~l~~~ldp~~~v~~r~~~ 285 (314)
++..+++++|++++.|++ +|+|||+||++|+++++++.++|+++.++..+++.....++++++++++||+.++.+|.++
T Consensus 337 ~l~~~~~~a~~l~~~l~~~~g~~~r~Ah~~v~~~~~~a~~~g~~~~~~~~~~~~~~~~l~~~~l~~~ldp~~~~~~r~~~ 416 (435)
T cd01359 337 AAEAGFSTATDLADYLVREKGVPFREAHHIVGRAVRLAEEKGKDLSDLTLAELQAISPLFEEDVREALDPENSVERRTSY 416 (435)
T ss_pred HHhcCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCCChhhcCHHHHHhhcccCHHHHHHhCCHHHHHHhccCC
Confidence 999999999999999999 5999999999999999999999999999988876655567789999999999999999999
Q ss_pred CCCcHHHHHHHHHHHHHH
Q psy15027 286 GATAPSQVQHSVDVFENF 303 (314)
Q Consensus 286 gG~a~~~v~~~i~~~~~~ 303 (314)
||++|+++++++++++..
T Consensus 417 Gg~~~~~~~~~~~~~~~~ 434 (435)
T cd01359 417 GGTAPAEVREQIARARAL 434 (435)
T ss_pred CCCCHHHHHHHHHHHHhc
Confidence 999999999999888754
No 9
>PRK12308 bifunctional argininosuccinate lyase/N-acetylglutamate synthase; Provisional
Probab=100.00 E-value=4e-53 Score=433.06 Aligned_cols=261 Identities=43% Similarity=0.705 Sum_probs=248.3
Q ss_pred cccCCCCccccHHHHHHHcCCCCCCCCcchhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceeeccCCCCCCC
Q psy15027 46 NGGGGTTHPIDRYRTTELLHFDSPSGNSLDSISDRDFIIEFLSHCSITIMHLSRISEEFIIFMNPQFDYVSLPDSLLTGS 125 (314)
Q Consensus 46 aA~~gt~~~idr~~la~~LGf~~~~~ns~d~~~~RD~~~e~~~~la~la~~L~kiA~Dl~l~ss~e~gei~lp~~~~~GS 125 (314)
++++|++++++|+++|+.|||..|..|++||+++||+++|+++++++++++|+|||+|+++|+++|||++++++.+++||
T Consensus 198 ga~agt~~~~~r~~~a~~LG~~~~~~n~~da~~~rd~~~e~~~~l~~~~~~l~ria~Dl~~~ss~e~g~~el~~~~~~gS 277 (614)
T PRK12308 198 GALAGTAYPIDREALAHNLGFRRATRNSLDSVSDRDHVMELMSVASISMLHLSRLAEDLIFYNSGESGFIELADTVTSGS 277 (614)
T ss_pred ccccCCCCCCCHHHHHHHhCCCCCcCCHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcCCEEeCccCCCcc
Confidence 55666678999999999999999999999999999999999999999999999999999999999999999998889999
Q ss_pred CCCCCCCChhHHHHHHHHHhhhhhhHHHHHHHHhcCcccccchhhhcchhHHHHHHHHHHHHHHHHhchhcceechhhhH
Q psy15027 126 SIMPQKKNPDILELIRGKTGRVYGNLFNMLTIMKSQPLAYNKDMQECKQPLVDSIETLNMCLTAFKLILDNVKFNTGRMY 205 (314)
Q Consensus 126 SiMPqKrNP~~~E~ir~~a~~v~g~~~~~l~~~~~~~~~~~rDl~~~~~~L~~~~~~~~~~l~~~~~~l~~l~vn~erm~ 205 (314)
|||||||||+.+|+++++++++.|++.+++.+++++|++|+||++.+|..+++++..+..++..+..+|++|+||++||+
T Consensus 278 SiMPqK~NP~~~E~i~~~a~~~~g~~~~~~~~~~~~~~~~~rd~~~~~~~l~~~~~~~~~~l~~~~~~l~~l~v~~~rm~ 357 (614)
T PRK12308 278 SLMPQKKNPDALELIRGKTGRVYGALAGMMMTVKALPLAYNKDMQEDKEGLFDALDTWNDCMEMAALCFDGIKVNGERTL 357 (614)
T ss_pred ccCcCccCCcHHHHHHHHHHHHhhHHHHHHHHHcCCchhhccchhhhHHHHHHHHHHHHHHHHHHHHHhCcCEECHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhccchhHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCChhHhhHHHHHhcccCCHHHHhhcCChhHhhhcccCC
Q psy15027 206 VSAGEGFSIATDIADYLAKKKIPFRSCHEIVGKIIKFCVQEAKPLDQLSLEELKAIHEDIGEDIFEILSVEKSVEHKDHV 285 (314)
Q Consensus 206 ~~l~~~~~~at~la~~L~~~Gi~~r~Ah~~v~~~v~~a~~~g~~l~e~~~~~~~~~~~~~~~~l~~~ldp~~~v~~r~~~ 285 (314)
+++..++++++++++.|+++|+|||+||++|+++++.+.++|+++.++..++...+...+.+++.+++||+.++++|...
T Consensus 358 ~~~~~g~~~a~~la~~L~~~g~~~r~Ah~~v~~~v~~a~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 437 (614)
T PRK12308 358 EAAKQGYANATELADYLVAKGIPFREAHHIVGVAVVGAIAKGCALEELSLEQLKEFSDVIEDDVYQILTIESCLEKRCAL 437 (614)
T ss_pred HHHHcCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCCChhhCCHHHHHHhhhhhhHHHHHhCCHHHHHHhccCC
Confidence 99999999999999999999999999999999999999999999999998875555666778899999999999999999
Q ss_pred CCCcHHHHHHHHHHHHHHHHH
Q psy15027 286 GATAPSQVQHSVDVFENFVKD 306 (314)
Q Consensus 286 gG~a~~~v~~~i~~~~~~l~~ 306 (314)
||++|+.+++++++++..++.
T Consensus 438 G~~~~~~v~~~~~~~~~~l~~ 458 (614)
T PRK12308 438 GGVSPEQVAYAVEQADKRLAA 458 (614)
T ss_pred CCCCHHHHHHHHHHHHHHhcC
Confidence 999999999999999888764
No 10
>PRK02186 argininosuccinate lyase; Provisional
Probab=100.00 E-value=6.7e-50 Score=424.18 Aligned_cols=258 Identities=26% Similarity=0.433 Sum_probs=236.6
Q ss_pred cccCCCCccccHHHHHHHcCCCCCCCCcchhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceeeccCCCCCCC
Q psy15027 46 NGGGGTTHPIDRYRTTELLHFDSPSGNSLDSISDRDFIIEFLSHCSITIMHLSRISEEFIIFMNPQFDYVSLPDSLLTGS 125 (314)
Q Consensus 46 aA~~gt~~~idr~~la~~LGf~~~~~ns~d~~~~RD~~~e~~~~la~la~~L~kiA~Dl~l~ss~e~gei~lp~~~~~GS 125 (314)
+|++|+++++||+++|++|||+.|..|++||+++||+++|+++++++++++|+|||+|+++|+++||||+.+|+.+++||
T Consensus 605 aag~gt~~~~~~~~~a~~LGf~~~~~n~~da~~~rd~~~e~~~~l~~~~~~l~ria~Dl~~~~~~e~g~i~~~~~~~~gS 684 (887)
T PRK02186 605 GAGGGTTFPIDPEFVARLLGFEQPAPNSLDAVASRDGVLHFLSAMAAISTVLSRLAQDLQLWTTREFALVSLPDALTGGS 684 (887)
T ss_pred ccccCCCCCCCHHHHHHHcCCCCCccCHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcEECCCcccccc
Confidence 45566788999999999999999999999999999999999999999999999999999999999999999999889999
Q ss_pred CCCCCCCChhHHHHHHHHHhhhhhhHHHHHHHHhcCcccccchh-hhcchhHHHHHHHHHHHHHHHHhchhcceechhhh
Q psy15027 126 SIMPQKKNPDILELIRGKTGRVYGNLFNMLTIMKSQPLAYNKDM-QECKQPLVDSIETLNMCLTAFKLILDNVKFNTGRM 204 (314)
Q Consensus 126 SiMPqKrNP~~~E~ir~~a~~v~g~~~~~l~~~~~~~~~~~rDl-~~~~~~L~~~~~~~~~~l~~~~~~l~~l~vn~erm 204 (314)
|||||||||+.+|++|++++++.|++.+++..++++|++|+.|. +.+|..+++++..+..+|..+..+|++|+||+++|
T Consensus 685 SiMPqKrNP~~~E~ir~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~l~~l~v~~~rm 764 (887)
T PRK02186 685 SMLPQKKNPFLLEFVKGRAGVVAGALASASAALGKTPFSNSFEAGSPMNGPIAQACAAIEDAAAVLVLLIDGLEADQARM 764 (887)
T ss_pred CCCCCCCCCcHHHHHHHHHHHHhhHHHHHHHHHccCCcccccchhhhhHHHHHHHHHHHHHHHHHHHHHHhhCEECHHHH
Confidence 99999999999999999999999999999999999999988885 88899999999999999999999999999999999
Q ss_pred HHhhccchhHHHHHHHHHHHc-CCChHHHHHHHHHHHHHHHHcCCChhHhhHHHHHhcccCCHHHHhhcCChhHhhhccc
Q psy15027 205 YVSAGEGFSIATDIADYLAKK-KIPFRSCHEIVGKIIKFCVQEAKPLDQLSLEELKAIHEDIGEDIFEILSVEKSVEHKD 283 (314)
Q Consensus 205 ~~~l~~~~~~at~la~~L~~~-Gi~~r~Ah~~v~~~v~~a~~~g~~l~e~~~~~~~~~~~~~~~~l~~~ldp~~~v~~r~ 283 (314)
++++..++.++|+++++|+++ |+|||+||++|+++++.|.++|.++.+.+.+... .+.. ..|+.++++|.
T Consensus 765 ~~~~~~~~~~at~la~~L~~~~g~~fr~Ah~~v~~~v~~~~~~~~~~~~~~~~~~~----~~~~-----~~~~~~~~~r~ 835 (887)
T PRK02186 765 RAHLEDGGVSATAVAESLVVRRSISFRSAHTQVGQAIRQSLDQGRSSADALAALDP----QFVS-----RAPLEWARSHR 835 (887)
T ss_pred HHHHhcCcchHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCCcccchHHHhhh----hhcc-----chHHHHHHHhh
Confidence 999999999999999999996 9999999999999999999999877666543311 1111 12677888999
Q ss_pred CCCCCcHHHHHHHHHHHHHHHHHHHHhhh
Q psy15027 284 HVGATAPSQVQHSVDVFENFVKDMTDLLK 312 (314)
Q Consensus 284 ~~gG~a~~~v~~~i~~~~~~l~~~~~~~~ 312 (314)
++|||+|+.|++++++++.+|++.+.||+
T Consensus 836 ~~gg~~~~~v~~~~~~~~~~l~~~~~~~~ 864 (887)
T PRK02186 836 FGGGPGAADLNAGLARACAALRDDEAVFR 864 (887)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999998888876
No 11
>PRK08540 adenylosuccinate lyase; Reviewed
Probab=100.00 E-value=4.8e-49 Score=389.60 Aligned_cols=256 Identities=22% Similarity=0.279 Sum_probs=231.2
Q ss_pred ccccCCCcccccccccCCCCccccHHHHHHHcCCCCCCCCcchhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q psy15027 33 EGKSGGGSESGDENGGGGTTHPIDRYRTTELLHFDSPSGNSLDSISDRDFIIEFLSHCSITIMHLSRISEEFIIFMNPQF 112 (314)
Q Consensus 33 ~~~~~~~~~~G~~aA~~gt~~~idr~~la~~LGf~~~~~ns~d~~~~RD~~~e~~~~la~la~~L~kiA~Dl~l~ss~e~ 112 (314)
..+.|| .+||.+++++++++|++ ++|++|||+.+..|+ ++++||++++++++++.++++|+|||+|+++|+++||
T Consensus 186 ~~~lGg--avGt~~a~~~~~~~i~~-~~a~~LGl~~~~~~~--~~~~rd~~~e~~~~l~~~a~~l~kia~Dl~l~s~~e~ 260 (449)
T PRK08540 186 VGQMTG--AVGTQAAFGEKGIEIQK-RVMEILGLKPVLISN--QVIQRDRHAEFMMFLANIATTLDKIGLEIRNLQRTEI 260 (449)
T ss_pred eccccc--cccchhhCCCccHHHHH-HHHHHcCCCCCCCcC--CccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 345666 89999999999999986 999999999887663 4699999999999999999999999999999999999
Q ss_pred ceeeccC-CCCCCCCCCCCCCChhHHHHHHHHHhhhhhhHHHHHHHHhcCcccccchhhhc---chhHHHHHHHHHHHHH
Q psy15027 113 DYVSLPD-SLLTGSSIMPQKKNPDILELIRGKTGRVYGNLFNMLTIMKSQPLAYNKDMQEC---KQPLVDSIETLNMCLT 188 (314)
Q Consensus 113 gei~lp~-~~~~GSSiMPqKrNP~~~E~ir~~a~~v~g~~~~~l~~~~~~~~~~~rDl~~~---~~~L~~~~~~~~~~l~ 188 (314)
|||.++. ..++|||||||||||+.+|+++++++++.|.+.. .++++|++|+||++.+ |..+++++..+..++.
T Consensus 261 gei~e~~~~~~~GSSiMP~K~NP~~~E~i~~~a~~~~g~~~~---~~~~~~~~~~rd~~~~~~e~~~l~~~~~~~~~~l~ 337 (449)
T PRK08540 261 GEVEEEFGKKQVGSSTMPHKRNPITSEQICGLARVVRSNVEP---ALLNNPLWDERDLTNSSCERIIFPESCVLTDHILK 337 (449)
T ss_pred hhhhcccCCCCCCcCCCCCCcCcHHHHHHHHHHHHHHHHHHH---HHhcchhhhccCCchhHHHHHHHHHHHHHHHHHHH
Confidence 9998764 4699999999999999999999999999998865 4567899999999986 6689999999999999
Q ss_pred HHHhchhcceechhhhHHhhc--cchhHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCChhHhhHHHHHhcccCCH
Q psy15027 189 AFKLILDNVKFNTGRMYVSAG--EGFSIATDIADYLAKKKIPFRSCHEIVGKIIKFCVQEAKPLDQLSLEELKAIHEDIG 266 (314)
Q Consensus 189 ~~~~~l~~l~vn~erm~~~l~--~~~~~at~la~~L~~~Gi~~r~Ah~~v~~~v~~a~~~g~~l~e~~~~~~~~~~~~~~ 266 (314)
.+..+|++|+||++||++++. .+++++|++++.|+++|+|||+||++|+++++.+..+|+++.+++.++......+++
T Consensus 338 ~~~~~l~~l~v~~~rm~~~l~~~~~~~~ae~la~~L~~~glg~~~Ah~~v~~l~~~a~~~g~~l~e~~~~~~~~~~~l~~ 417 (449)
T PRK08540 338 LMIKVLEGLRFNPENIRRNLELTKGLIMAEAVMIELAKRGMGRQEAHELVRQAAMKAHEEGRHLKEVLLEDEEVMKYLTE 417 (449)
T ss_pred HHHHHHccCEECHHHHHHHHHHhcCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhCCCHHHHHHhChhhhccCCH
Confidence 999999999999999999985 799999999999999999999999999999999999999999998876443344668
Q ss_pred HHHhhcCChhHhhhcccCCCCCcHHHHHHHHHHHHHH
Q psy15027 267 EDIFEILSVEKSVEHKDHVGATAPSQVQHSVDVFENF 303 (314)
Q Consensus 267 ~~l~~~ldp~~~v~~r~~~gG~a~~~v~~~i~~~~~~ 303 (314)
++|++++||+ .|+|++++.+++++++++++
T Consensus 418 ~~l~~~ldp~-------~~~g~a~~~v~~~~~~~~~~ 447 (449)
T PRK08540 418 EELEELLDPE-------TYIGTAPEIVENVIEKLKEW 447 (449)
T ss_pred HHHHHHcCHH-------HhcCchHHHHHHHHHHHHHh
Confidence 8899999999 77899999999999877653
No 12
>PRK07492 adenylosuccinate lyase; Provisional
Probab=100.00 E-value=4.5e-47 Score=373.34 Aligned_cols=247 Identities=14% Similarity=0.121 Sum_probs=217.8
Q ss_pred ccccCCCcccccccccCCCCccccHHHHHHHcCCCCCCCCcchh-hhchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q psy15027 33 EGKSGGGSESGDENGGGGTTHPIDRYRTTELLHFDSPSGNSLDS-ISDRDFIIEFLSHCSITIMHLSRISEEFIIFMNPQ 111 (314)
Q Consensus 33 ~~~~~~~~~~G~~aA~~gt~~~idr~~la~~LGf~~~~~ns~d~-~~~RD~~~e~~~~la~la~~L~kiA~Dl~l~ss~e 111 (314)
.+++||+ +||++++. ..+ +++++++|||+.+. .+| +++||+++++++++++++++|+|||+|+++|+++|
T Consensus 180 ~~~lgGA--vGT~~~~~---~~~-~~~~a~~LGl~~~~---~~~~v~~RD~~~e~~~~la~~~~~L~ria~Di~~l~~~e 250 (435)
T PRK07492 180 TCAISGA--VGTFANID---PRV-EEHVAKKLGLKPEP---VSTQVIPRDRHAMFFATLGVIASSIERLAIEIRHLQRTE 250 (435)
T ss_pred hccCccc--ccCCccCC---hHH-HHHHHHHhCCCCCC---ccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 4566664 57766553 123 36999999998744 346 59999999999999999999999999999999999
Q ss_pred CceeeccCC-CCCCCCCCCCCCChhHHHHHHHHHhhhhhhHHHHHHHHhcCcccccchhhhc---chhHHHHHHHHHHHH
Q psy15027 112 FDYVSLPDS-LLTGSSIMPQKKNPDILELIRGKTGRVYGNLFNMLTIMKSQPLAYNKDMQEC---KQPLVDSIETLNMCL 187 (314)
Q Consensus 112 ~gei~lp~~-~~~GSSiMPqKrNP~~~E~ir~~a~~v~g~~~~~l~~~~~~~~~~~rDl~~~---~~~L~~~~~~~~~~l 187 (314)
|+|+.++.. .++|||+|||||||+.+|+++++++.+.|++.. +++++|++|+||++.+ |..+|+++..+..++
T Consensus 251 ~~El~e~~~~g~~GSS~MPhKrNP~~~E~i~~~a~~~~~~~~~---~~~~~~~~~eRD~~~~~~e~~~lp~~~~~~~~~l 327 (435)
T PRK07492 251 VLEAEEFFSPGQKGSSAMPHKRNPVLTENLTGLARLVRSYVVP---AMENVALWHERDISHSSVERMIGPDATITLDFAL 327 (435)
T ss_pred cchhccccCCCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHHH---HHHhcchhhccCChHHHHhhhHHHHHHHHHHHHH
Confidence 999998874 589999999999999999999999999999655 4557899999999843 458999999999999
Q ss_pred HHHHhchhcceechhhhHHhhc--cchhHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCChhHhhHHHHHhcccCC
Q psy15027 188 TAFKLILDNVKFNTGRMYVSAG--EGFSIATDIADYLAKKKIPFRSCHEIVGKIIKFCVQEAKPLDQLSLEELKAIHEDI 265 (314)
Q Consensus 188 ~~~~~~l~~l~vn~erm~~~l~--~~~~~at~la~~L~~~Gi~~r~Ah~~v~~~v~~a~~~g~~l~e~~~~~~~~~~~~~ 265 (314)
..+..+|++|+||++||++|+. .++++++++++.|+++|+|||+||++|+++++.+.+++++|.+++.+++.....++
T Consensus 328 ~~~~~~l~~L~v~~~rm~~nl~~~~g~i~ae~~~~~L~~~g~~r~~Ah~~V~~~~~~a~~~~~~l~e~l~~~~~~~~~l~ 407 (435)
T PRK07492 328 NRLAGVIEKLVVYPENMLKNLNKFGGLVHSQRVLLALTQAGVSREDAYRLVQRNAMKVWEQGGDFLEELKADPEVRAALS 407 (435)
T ss_pred HHHHHHHccCEECHHHHHHHHhhcCChhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhCCCHHHHHhCCHHhHhcCC
Confidence 9999999999999999999996 69999999999999999999999999999999999999999999988766545667
Q ss_pred HHHHhhcCChhHhhhcccCCCCCcHHHHHHHHH
Q psy15027 266 GEDIFEILSVEKSVEHKDHVGATAPSQVQHSVD 298 (314)
Q Consensus 266 ~~~l~~~ldp~~~v~~r~~~gG~a~~~v~~~i~ 298 (314)
+++|+.++||+ .|.|.+++.++++++
T Consensus 408 ~~el~~~~dp~-------~ylg~~~~~~~~~~~ 433 (435)
T PRK07492 408 EEEIEELFDLG-------YHTKHVDTIFKRVFG 433 (435)
T ss_pred HHHHHHHhCHH-------HHhcchHHHHHHHhh
Confidence 88999999999 889999999988863
No 13
>PRK08470 adenylosuccinate lyase; Provisional
Probab=100.00 E-value=6.8e-47 Score=373.10 Aligned_cols=247 Identities=17% Similarity=0.139 Sum_probs=216.5
Q ss_pred ccccCCCcccccccccCCCCccccHHHHHHHcCCCCCCCCcchhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q psy15027 33 EGKSGGGSESGDENGGGGTTHPIDRYRTTELLHFDSPSGNSLDSISDRDFIIEFLSHCSITIMHLSRISEEFIIFMNPQF 112 (314)
Q Consensus 33 ~~~~~~~~~~G~~aA~~gt~~~idr~~la~~LGf~~~~~ns~d~~~~RD~~~e~~~~la~la~~L~kiA~Dl~l~ss~e~ 112 (314)
.+++|| .+||++++ ++++ |++++++|||+.+..+. ++++||+++|+++++++++++|+|||+|+++|+++||
T Consensus 177 ~~~lgG--AvGt~a~~---~~~v-~~~~a~~LGl~~~~~~~--~v~~RD~~~e~~~~La~~a~~L~ria~Di~~l~~~E~ 248 (442)
T PRK08470 177 VGKISG--AMGNFAHA---PLEL-EELVCEELGLKPAPVSN--QVIQRDRYARLASALALLASSCEKIAVAIRHLQRTEV 248 (442)
T ss_pred hhcCcc--hhcccccC---ChHH-HHHHHHHcCCCCCCCCC--CccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 355644 56777655 3677 67999999999644331 5699999999999999999999999999999999999
Q ss_pred ceeeccCC-CCCCCCCCCCCCChhHHHHHHHHHhhhhhhHHHHHHHHhcCcccccchhhhc---chhHHHHHHHHHHHHH
Q psy15027 113 DYVSLPDS-LLTGSSIMPQKKNPDILELIRGKTGRVYGNLFNMLTIMKSQPLAYNKDMQEC---KQPLVDSIETLNMCLT 188 (314)
Q Consensus 113 gei~lp~~-~~~GSSiMPqKrNP~~~E~ir~~a~~v~g~~~~~l~~~~~~~~~~~rDl~~~---~~~L~~~~~~~~~~l~ 188 (314)
+|+.++.. .++|||||||||||+.+|+++++++.+.|.+.. +++++|++|+||++.+ |..||+++..+..++.
T Consensus 249 ~ev~e~~~~g~~GSS~MPhKrNPv~~E~i~~~a~~~~~~~~~---~~~~~~~~~eRD~~~~~~e~~~l~~~~~~~~~~l~ 325 (442)
T PRK08470 249 YEAEEYFSKGQKGSSAMPHKRNPVLSENITGLCRVIRSFATP---ALENVALWHERDISHSSVERFILPDAFITTDFMLH 325 (442)
T ss_pred ceecccCCCCCCCcCCCCCCcCcHHHHHHHHHHHHHHHHHHH---HHHhchHhhccCCchhHHHhhhHHHHHHHHHHHHH
Confidence 99999874 589999999999999999999999999999754 4567899999999864 5589999999999999
Q ss_pred HHHhchhcceechhhhHHhhc--cchhHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHc---CCC---------hhHhh
Q psy15027 189 AFKLILDNVKFNTGRMYVSAG--EGFSIATDIADYLAKKKIPFRSCHEIVGKIIKFCVQE---AKP---------LDQLS 254 (314)
Q Consensus 189 ~~~~~l~~l~vn~erm~~~l~--~~~~~at~la~~L~~~Gi~~r~Ah~~v~~~v~~a~~~---g~~---------l~e~~ 254 (314)
.+..++++|+||++||++|+. .++++++++++.|+++|+|||+||++|++++.++.++ |++ |.+.+
T Consensus 326 ~~~~~l~~l~v~~~rm~~nl~~~~g~~~ae~l~~~L~~~G~~~~~Ah~~V~~~~~~a~~~~~~~~~~~~~~~~~~l~~~l 405 (442)
T PRK08470 326 RLNNVIENLVVYPENMMKNLNLTGGLVFSQRVLLELPKKGVSREDAYKIVQRNAMKVWEDLQQGKAAINEKGESLFLQAL 405 (442)
T ss_pred HHHHHHccCEECHHHHHHHHHhccChHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhhcCCCccccccHHHHHHHH
Confidence 999999999999999999994 5999999999999999999999999999999999998 999 88888
Q ss_pred HHHHHhcccCCHHHHhhcCChhHhhhcccCCCCCcHHHHHHHH
Q psy15027 255 LEELKAIHEDIGEDIFEILSVEKSVEHKDHVGATAPSQVQHSV 297 (314)
Q Consensus 255 ~~~~~~~~~~~~~~l~~~ldp~~~v~~r~~~gG~a~~~v~~~i 297 (314)
.++......+.+++|+.++||. .|.|.++..+++++
T Consensus 406 ~~~~~~~~~~~~~~l~~~~dp~-------~~~g~~~~~~~~~~ 441 (442)
T PRK08470 406 LNDEDLRKSLSEEEIRACFDYS-------YYTKNVDAIFKRVF 441 (442)
T ss_pred hcCHHhHhcCCHHHHHHHhCHH-------HHHhhHHHHHHHHh
Confidence 7765544556788999999999 78899988888764
No 14
>PRK07380 adenylosuccinate lyase; Provisional
Probab=100.00 E-value=2.4e-46 Score=367.79 Aligned_cols=246 Identities=15% Similarity=0.122 Sum_probs=216.2
Q ss_pred ccccCCCcccccccccCCCCccccHHHHHHHcCCCCCCCCcchhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q psy15027 33 EGKSGGGSESGDENGGGGTTHPIDRYRTTELLHFDSPSGNSLDSISDRDFIIEFLSHCSITIMHLSRISEEFIIFMNPQF 112 (314)
Q Consensus 33 ~~~~~~~~~~G~~aA~~gt~~~idr~~la~~LGf~~~~~ns~d~~~~RD~~~e~~~~la~la~~L~kiA~Dl~l~ss~e~ 112 (314)
.+++||+ +||++++. ..++ +++++.|||..+..+ +++.+||+++|+++++++++++|+|||+|+++|++.||
T Consensus 177 ~~~l~GA--vGt~~~~~---~~~~-~~~a~~LGl~~~~~~--~~v~~rd~~~e~~~~la~~a~~L~kia~Di~~l~~~~~ 248 (431)
T PRK07380 177 VGQISGA--VGTYANTD---PRVE-AITCQKLGLKPDTAS--TQVISRDRHAEYVQTLALVGASLERFATEIRNLQRTDV 248 (431)
T ss_pred ccCcchh--hcCcccCC---hhHH-HHHHHHcCCCCCCCC--CCccCcHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCc
Confidence 3456443 47766653 2332 389999999987654 24599999999999999999999999999999999999
Q ss_pred ceeeccCC-CCCCCCCCCCCCChhHHHHHHHHHhhhhhhHHHHHHHHhcCcccccchhhhc---chhHHHHHHHHHHHHH
Q psy15027 113 DYVSLPDS-LLTGSSIMPQKKNPDILELIRGKTGRVYGNLFNMLTIMKSQPLAYNKDMQEC---KQPLVDSIETLNMCLT 188 (314)
Q Consensus 113 gei~lp~~-~~~GSSiMPqKrNP~~~E~ir~~a~~v~g~~~~~l~~~~~~~~~~~rDl~~~---~~~L~~~~~~~~~~l~ 188 (314)
+|+.++.. .++|||+|||||||+.+|+++++|+.+.|.+..+ ++++|++||||++.+ |..+|+++..+..++.
T Consensus 249 ~el~e~~~~g~~GSS~MPhKrNP~~~E~i~~~a~~~~g~~~~~---~~~~~~~~eRD~~~~~~e~~~l~~~~~~~~~~l~ 325 (431)
T PRK07380 249 LEVEEYFAKGQKGSSAMPHKRNPIRSERLSGLARVLRSYAVAA---LENVALWHERDISHSSVERVMLPDCSILLHFMLR 325 (431)
T ss_pred eeecccCCCCCCCCcCCCCCCCCHHHHHHHHHHHHHHHHHHHH---HHhchhhhccCchHHHHHHHHHHHHHHHHHHHHH
Confidence 99988774 4799999999999999999999999999999864 557889999999864 5699999999999999
Q ss_pred HHHhchhcceechhhhHHhhc--cchhHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHH-cCCChhHhhHHHHHhcccCC
Q psy15027 189 AFKLILDNVKFNTGRMYVSAG--EGFSIATDIADYLAKKKIPFRSCHEIVGKIIKFCVQ-EAKPLDQLSLEELKAIHEDI 265 (314)
Q Consensus 189 ~~~~~l~~l~vn~erm~~~l~--~~~~~at~la~~L~~~Gi~~r~Ah~~v~~~v~~a~~-~g~~l~e~~~~~~~~~~~~~ 265 (314)
.+..++++|+||+++|++|+. .++++++++++.|+++|+|||+||++|+++++++.+ +|.+|.+++.+++.....++
T Consensus 326 ~~~~~l~~L~v~~~rm~~nl~~~~g~~~ae~~~~~Lv~~gl~r~~Ah~~V~~~~~~a~~~~~~~l~e~l~~~~~~~~~l~ 405 (431)
T PRK07380 326 EMTDLVKNLLVYPENMRRNMNIYGGVVFSQRVLLALVEKGMSREEAYRLVQKNAHTAWNTEGGNFRANLEADPEVTQLLS 405 (431)
T ss_pred HHHHHHccCEECHHHHHHHHHhcCChHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhCCCHHHHHHcChHhhhcCC
Confidence 999999999999999999994 899999999999999999999999999999999999 99999999998876445667
Q ss_pred HHHHhhcCChhHhhhcccCCCCCcHHHHHHH
Q psy15027 266 GEDIFEILSVEKSVEHKDHVGATAPSQVQHS 296 (314)
Q Consensus 266 ~~~l~~~ldp~~~v~~r~~~gG~a~~~v~~~ 296 (314)
+++|++++||. .|.|.++..++++
T Consensus 406 ~~~l~~~~dp~-------~ylg~~~~~~~~~ 429 (431)
T PRK07380 406 AAELADCFDPQ-------LHLKNLDVIYQRL 429 (431)
T ss_pred HHHHHHhhCHH-------HHhcchHHHHHHh
Confidence 88999999999 8889988887653
No 15
>PRK09053 3-carboxy-cis,cis-muconate cycloisomerase; Provisional
Probab=100.00 E-value=2.7e-46 Score=370.17 Aligned_cols=251 Identities=20% Similarity=0.222 Sum_probs=227.1
Q ss_pred ccccCCCcccccccccCCCCccccHHHHHHHcCCCCCCCCcchhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q psy15027 33 EGKSGGGSESGDENGGGGTTHPIDRYRTTELLHFDSPSGNSLDSISDRDFIIEFLSHCSITIMHLSRISEEFIIFMNPQF 112 (314)
Q Consensus 33 ~~~~~~~~~~G~~aA~~gt~~~idr~~la~~LGf~~~~~ns~d~~~~RD~~~e~~~~la~la~~L~kiA~Dl~l~ss~e~ 112 (314)
..++||+ +||++++.+++++|+ +++|++|||+.+..+ |+.+||+++|++++|+.++++|+|||+||++|+++||
T Consensus 191 ~~~lGga--vGt~~~~~~~~~~v~-~~~a~~LGl~~~~~~---~~~~rD~~~e~~~~la~la~~L~kia~Di~ll~~~e~ 264 (452)
T PRK09053 191 VLQFGGA--AGTLASLGEQALPVA-QALAAELQLALPALP---WHTQRDRIAEFASALGLLAGTLGKIARDVSLLMQTEV 264 (452)
T ss_pred hccccch--hhcccccccchHHHH-HHHHHHcCCCCCCCC---cccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 4577886 899999999999995 699999999987766 8899999999999999999999999999999999999
Q ss_pred ceeeccC-CCCCCCCCCCCCCChhHHHHHHHHHhhhhhhHHHHHHHHhcCcccccchh---hhcchhHHHHHHHHHHHHH
Q psy15027 113 DYVSLPD-SLLTGSSIMPQKKNPDILELIRGKTGRVYGNLFNMLTIMKSQPLAYNKDM---QECKQPLVDSIETLNMCLT 188 (314)
Q Consensus 113 gei~lp~-~~~~GSSiMPqKrNP~~~E~ir~~a~~v~g~~~~~l~~~~~~~~~~~rDl---~~~~~~L~~~~~~~~~~l~ 188 (314)
|||.+|+ .+++|||||||||||+.+|+++++++++.|+...++. +++.+|+||. +..|..|++++..+..++.
T Consensus 265 gev~e~~~~~~~GSSiMP~KrNPv~~E~i~~~a~~v~g~~~~~~~---~~~~~~erd~~~~~~~~~~l~~~~~~~~~al~ 341 (452)
T PRK09053 265 GEVFEPAAAGKGGSSTMPHKRNPVGCAAVLTAATRAPGLVATLFA---AMPQEHERALGGWHAEWDTLPELACLAAGALA 341 (452)
T ss_pred chhhccccCCCCCcCCCCCCCCchHHHHHHHHHHHHHHHHHHHHH---hChhhhcccCCccHHHHHHHHHHHHHHHHHHH
Confidence 9998886 4699999999999999999999999999999998754 5678999998 5567899999999999999
Q ss_pred HHHhchhcceechhhhHHhh--ccchhHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCChhHhhHHHHHhcccCCH
Q psy15027 189 AFKLILDNVKFNTGRMYVSA--GEGFSIATDIADYLAKKKIPFRSCHEIVGKIIKFCVQEAKPLDQLSLEELKAIHEDIG 266 (314)
Q Consensus 189 ~~~~~l~~l~vn~erm~~~l--~~~~~~at~la~~L~~~Gi~~r~Ah~~v~~~v~~a~~~g~~l~e~~~~~~~~~~~~~~ 266 (314)
.+..+|++|+||+++|++++ ..++++++.++..|+.+ +++++||++|+++++.+.++|+++.+++.++......+++
T Consensus 342 ~~~~~l~~l~v~~erm~~~l~~s~~~~~ae~~~~~La~~-lgr~~Ah~iV~~~~~~a~~~g~~~~~~~~~~~~~~~~l~~ 420 (452)
T PRK09053 342 QMAQIVEGLEVDAARMRANLDLTHGLILAEAVMLALADR-IGRLDAHHLVEQASKRAVAEGRHLRDVLAEDPQVSAHLSP 420 (452)
T ss_pred HHHHHHcCCEECHHHHHHHHHhcCCHHHHHHHHHHHHhc-cCHHHHHHHHHHHHHHHHHHCCCHHHHHHhChhhhccCCH
Confidence 99999999999999999999 46889999999999887 9999999999999999999999999998877543345678
Q ss_pred HHHhhcCChhHhhhcccCCCCCcHHHHHHHHHHH
Q psy15027 267 EDIFEILSVEKSVEHKDHVGATAPSQVQHSVDVF 300 (314)
Q Consensus 267 ~~l~~~ldp~~~v~~r~~~gG~a~~~v~~~i~~~ 300 (314)
++++.++||. .|.|.++..+++++++.
T Consensus 421 ~~l~~~l~P~-------~~~g~~~~~~~~~~~~~ 447 (452)
T PRK09053 421 AALDRLLDPA-------HYLGQAHAWVDRVLAEH 447 (452)
T ss_pred HHHHHHcCHH-------HHhcchHHHHHHHHHHh
Confidence 8999999999 67799999999987543
No 16
>cd01597 pCLME prokaryotic 3-carboxy-cis,cis-muconate cycloisomerase (CMLE)_like. This subgroup contains pCLME and related proteins, and belongs to the Lyase class I family. Members of this family for the most part catalyze similar beta-elimination reactions in which a C-N or C-O bond is cleaved with the release of fumarate as one of the products. These proteins are active as tetramers. The four active sites of the homotetrameric enzyme are each formed by residues from three different subunits. CMLE catalyzes the cyclization of 3-carboxy-cis,cis-muconate (3CM) to 4-carboxy-muconolactone in the beta-ketoadipate pathway. This pathway is responsible for the catabolism of a variety of aromatic compounds into intermediates of the citric cycle in prokaryotic and eukaryotic micro-organisms.
Probab=100.00 E-value=4.9e-46 Score=367.14 Aligned_cols=248 Identities=23% Similarity=0.243 Sum_probs=215.2
Q ss_pred cccCCCcccccccccCCCCccccHHHHHHHcCCCCCCCCcchhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc
Q psy15027 34 GKSGGGSESGDENGGGGTTHPIDRYRTTELLHFDSPSGNSLDSISDRDFIIEFLSHCSITIMHLSRISEEFIIFMNPQFD 113 (314)
Q Consensus 34 ~~~~~~~~~G~~aA~~gt~~~idr~~la~~LGf~~~~~ns~d~~~~RD~~~e~~~~la~la~~L~kiA~Dl~l~ss~e~g 113 (314)
.+.|| .+||.+++..... .+|+++|+.|||+.+..+ |+++||++++++++++.++.+|+|||+|+++|+++|||
T Consensus 183 ~~lGg--a~Gtg~~~~~~~~-~~~~~~a~~LGf~~~~~~---~~~~rd~~~e~~~~l~~~a~~l~rla~Dl~l~s~~e~g 256 (437)
T cd01597 183 VQFGG--AAGTLASLGDQGL-AVQEALAAELGLGVPAIP---WHTARDRIAELASFLALLTGTLGKIARDVYLLMQTEIG 256 (437)
T ss_pred hcccc--ccccccccCCcHH-HHHHHHHHHcCCCCCCCc---cccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 34555 3444444433222 248899999999987755 88999999999999999999999999999999999999
Q ss_pred eeeccC-CCCCCCCCCCCCCChhHHHHHHHHHhhhhhhHHHHHHHHhcCcccccchh---hhcchhHHHHHHHHHHHHHH
Q psy15027 114 YVSLPD-SLLTGSSIMPQKKNPDILELIRGKTGRVYGNLFNMLTIMKSQPLAYNKDM---QECKQPLVDSIETLNMCLTA 189 (314)
Q Consensus 114 ei~lp~-~~~~GSSiMPqKrNP~~~E~ir~~a~~v~g~~~~~l~~~~~~~~~~~rDl---~~~~~~L~~~~~~~~~~l~~ 189 (314)
||.+|+ .+++|||||||||||+.+|+++++++++.|+.+.++.++ .++|+||+ +..|..|++++..+..++..
T Consensus 257 el~~~~~~~~~GSSiMPqK~NP~~~E~i~~~a~~~~g~~~~~~~~~---~~~~erd~~~~~~~~~~l~~~~~~~~~~l~~ 333 (437)
T cd01597 257 EVAEPFAKGRGGSSTMPHKRNPVGCELIVALARRVPGLAALLLDAM---VQEHERDAGAWHAEWIALPEIFLLASGALEQ 333 (437)
T ss_pred eeecccCCCCCCCCCCCCCcCcHHHHHHHHHHHHHHHHHHHHHHhc---hhhcccCCchhHHHHHHHHHHHHHHHHHHHH
Confidence 999998 579999999999999999999999999999988877654 36899998 66788999999999999999
Q ss_pred HHhchhcceechhhhHHhhc--cchhHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCChhHhhHHHHHhcccCCHH
Q psy15027 190 FKLILDNVKFNTGRMYVSAG--EGFSIATDIADYLAKKKIPFRSCHEIVGKIIKFCVQEAKPLDQLSLEELKAIHEDIGE 267 (314)
Q Consensus 190 ~~~~l~~l~vn~erm~~~l~--~~~~~at~la~~L~~~Gi~~r~Ah~~v~~~v~~a~~~g~~l~e~~~~~~~~~~~~~~~ 267 (314)
+..++++|+||++||++++. .++.+++.++..|++ ++|||+||++|+++++.+.++|+++.++..++......++++
T Consensus 334 ~~~~l~~l~v~~~rm~~~~~~~~~~~~ae~l~~~l~~-~i~~~~Ah~~v~~~~~~a~~~g~~~~~~~~~~~~~~~~l~~~ 412 (437)
T cd01597 334 AEFLLSGLEVNEDRMRANLDLTGGLILSEAVMMALAP-KLGRQEAHDLVYEACMRAVEEGRPLREVLLEDPEVAAYLSDE 412 (437)
T ss_pred HHHHHcCCEECHHHHHHHHHhccChHHHHHHHHHHHH-hcCHHHHHHHHHHHHHHHHHhCCCHHHHHHhChhhhccCCHH
Confidence 99999999999999999994 567789999999998 599999999999999999999999999988775533445688
Q ss_pred HHhhcCChhHhhhcccCCCCCcHHHHHHHHH
Q psy15027 268 DIFEILSVEKSVEHKDHVGATAPSQVQHSVD 298 (314)
Q Consensus 268 ~l~~~ldp~~~v~~r~~~gG~a~~~v~~~i~ 298 (314)
++++++||+ .|.|++|..++++++
T Consensus 413 ~l~~~ldp~-------~~v~~a~~~~~~~~~ 436 (437)
T cd01597 413 ELDALLDPA-------NYLGSAPALVDRVLA 436 (437)
T ss_pred HHHHhcCHH-------HHhcchHHHHHHHHh
Confidence 899999999 555899999998863
No 17
>PRK06390 adenylosuccinate lyase; Provisional
Probab=100.00 E-value=2.1e-45 Score=363.65 Aligned_cols=257 Identities=21% Similarity=0.183 Sum_probs=220.0
Q ss_pred cccCCCcccccccccCCCCccccHHHHHHHcCCCCCCCCcchhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc
Q psy15027 34 GKSGGGSESGDENGGGGTTHPIDRYRTTELLHFDSPSGNSLDSISDRDFIIEFLSHCSITIMHLSRISEEFIIFMNPQFD 113 (314)
Q Consensus 34 ~~~~~~~~~G~~aA~~gt~~~idr~~la~~LGf~~~~~ns~d~~~~RD~~~e~~~~la~la~~L~kiA~Dl~l~ss~e~g 113 (314)
.++|| .+||.++.+ ++++.+++++|+.|||+.+..+ +++++||++++++++++.++++|+|||+|+++|+++|||
T Consensus 186 ~~~~g--avGt~a~~g-~~~~~~~~~~a~~LGl~~~~~~--~~~~~rD~~~e~~~~l~~la~~l~kia~Di~l~ss~e~g 260 (451)
T PRK06390 186 GKVLG--PVGTGAALG-KDALDIQNRVMEILGIYSEIGS--TQIVNRDRYIEYLSVINGISVTLEKIATEIRNLQRPEID 260 (451)
T ss_pred hccCC--hhcChhhCC-CcHHHHHHHHHHHcCCCCCCCc--cccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 45565 788887775 4466778899999999987554 366999999999999999999999999999999999999
Q ss_pred eeeccC--CCCCCCCCCCCCCChhHHHHHHHHHhhhhhhHHHHHHHHhcCcccccchhhhcc---hhHHHHHHHHHHHHH
Q psy15027 114 YVSLPD--SLLTGSSIMPQKKNPDILELIRGKTGRVYGNLFNMLTIMKSQPLAYNKDMQECK---QPLVDSIETLNMCLT 188 (314)
Q Consensus 114 ei~lp~--~~~~GSSiMPqKrNP~~~E~ir~~a~~v~g~~~~~l~~~~~~~~~~~rDl~~~~---~~L~~~~~~~~~~l~ 188 (314)
|+.++. ++++|||||||||||+.+|.+++++..+.++....+. ..+.+|+||++.+. ..++..+..+..++.
T Consensus 261 ~v~E~~~~~~~~GSSiMP~KrNPv~~E~i~~~a~~~~~l~~~~~~---~~~~~~erd~~~~~~e~~~~~~~~~~~~~~l~ 337 (451)
T PRK06390 261 EVSEYFDEESQVGSSSMPSKVNPINSENVVSLSRFIRSLIIPEYE---AGVTWHERDLTNSALERFTIPYASILIDYVLY 337 (451)
T ss_pred hhhcccccCCCCCccCCCCCCCcHHHHHHHHHHHHHHHhHHHHHH---hhhHhhccCCcchHHHHhhHHHHHHHHHHHHH
Confidence 997543 4799999999999999999999999888877763333 33456999998654 357888889999999
Q ss_pred HHHhchhcceechhhhHHhhccchhH-HHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCChhHhhHHHHHhcccCCHH
Q psy15027 189 AFKLILDNVKFNTGRMYVSAGEGFSI-ATDIADYLAKKKIPFRSCHEIVGKIIKFCVQEAKPLDQLSLEELKAIHEDIGE 267 (314)
Q Consensus 189 ~~~~~l~~l~vn~erm~~~l~~~~~~-at~la~~L~~~Gi~~r~Ah~~v~~~v~~a~~~g~~l~e~~~~~~~~~~~~~~~ 267 (314)
.+..++++|+||++||++++..++++ ++++++.|++.|++||+||++|+++++++..+|+++.+++.++ .....++++
T Consensus 338 ~~~~~l~~l~v~~~rm~~~l~~~~~~~se~la~~L~~~G~~~~~Ah~~v~~~~~~a~~~g~~l~~~~~~~-~~~~~l~~~ 416 (451)
T PRK06390 338 NMNDVLSHLIIKEDEIRRNLESDDSIMSESIVRALTLSGMPRQDAHEFVRRASMEARSNGKSLKSSLIEA-GILKYIDEK 416 (451)
T ss_pred HHHHHHcCCEECHHHHHHHHhccchhhHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhCCCHHHHHHhC-hhhhcCCHH
Confidence 99999999999999999999755555 6679999999999999999999999999999999999988766 333445678
Q ss_pred HHhhcCChhHhhhcccCCCCCcHHHHHHHHHHHHHHHHH
Q psy15027 268 DIFEILSVEKSVEHKDHVGATAPSQVQHSVDVFENFVKD 306 (314)
Q Consensus 268 ~l~~~ldp~~~v~~r~~~gG~a~~~v~~~i~~~~~~l~~ 306 (314)
++++++||. .|.|++++.++++++++++++++
T Consensus 417 ~l~~~ldP~-------~~i~~a~~~v~~~~~~~~~~~~~ 448 (451)
T PRK06390 417 TLDRAMDPA-------NFIGQAPSICDNVVNNAERRMKD 448 (451)
T ss_pred HHHHhcCHH-------HHhhhhHHHHHHHHHHHHHHhhc
Confidence 899999999 55689999999999999988875
No 18
>COG0015 PurB Adenylosuccinate lyase [Nucleotide transport and metabolism]
Probab=100.00 E-value=5.5e-45 Score=354.02 Aligned_cols=252 Identities=22% Similarity=0.242 Sum_probs=226.9
Q ss_pred ccccccCCCcccccccccCCCCccccHHHHHHHcCCCCCCCCcchhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q psy15027 31 KSEGKSGGGSESGDENGGGGTTHPIDRYRTTELLHFDSPSGNSLDSISDRDFIIEFLSHCSITIMHLSRISEEFIIFMNP 110 (314)
Q Consensus 31 ~~~~~~~~~~~~G~~aA~~gt~~~idr~~la~~LGf~~~~~ns~d~~~~RD~~~e~~~~la~la~~L~kiA~Dl~l~ss~ 110 (314)
+..+++|| ++||++++++.+..++ +++++.|||..+...+ ||.+||+++||.++|++++++|.|||.|+++|+++
T Consensus 179 ~~~g~i~G--a~Gt~Aa~~~~~~~ve-~~v~e~LGL~~~p~st--q~~~RD~~ae~~~~La~i~~sl~k~a~dIr~l~~~ 253 (438)
T COG0015 179 IIVGKIGG--AVGTLAALGDLGAEVE-ERVAEKLGLKPAPIST--QVSPRDRIAEFFSALALLAGSLEKFARDIRLLQRT 253 (438)
T ss_pred hhhhcccc--chhhHhhcCchhHHHH-HHHHHHcCCCCCCCCc--ccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34455554 6899999999998895 5999999999644443 99999999999999999999999999999999999
Q ss_pred CCceeeccCC-CCCCCCCCCCCCChhHHHHHHHHHhhhhhhHHHHHHHHhcCcccccchhhhc---chhHHHHHHHHHHH
Q psy15027 111 QFDYVSLPDS-LLTGSSIMPQKKNPDILELIRGKTGRVYGNLFNMLTIMKSQPLAYNKDMQEC---KQPLVDSIETLNMC 186 (314)
Q Consensus 111 e~gei~lp~~-~~~GSSiMPqKrNP~~~E~ir~~a~~v~g~~~~~l~~~~~~~~~~~rDl~~~---~~~L~~~~~~~~~~ 186 (314)
|++|+.+|+. .++|||+|||||||+.||++.++++.+.+++..++.. ++++||||++.+ |..||++|.++..+
T Consensus 254 e~~Ev~E~f~~gq~GSSaMPHKrNPi~~E~~~glar~~r~~~~~~~e~---~~~whERdlt~ssver~~Lp~~~~~~~~a 330 (438)
T COG0015 254 EVGEVEEPFAKGQVGSSAMPHKRNPIDSENVTGLARVARALVSTLLEN---LVLWHERDLTDSSVERVILPDAFIAADGA 330 (438)
T ss_pred cccccccccCCCCCCCCCCCcccCcHHHHHHHHHHHHHHHHHHHHHHH---hHHHHhccccchHHHHHHHHHHHHHHHHH
Confidence 9999999985 5999999999999999999999999999999997775 478999999765 45999999999999
Q ss_pred HHHHHhchhcceechhhhHHhh--ccchhHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCChhHhhHHHHHhcccC
Q psy15027 187 LTAFKLILDNVKFNTGRMYVSA--GEGFSIATDIADYLAKKKIPFRSCHEIVGKIIKFCVQEAKPLDQLSLEELKAIHED 264 (314)
Q Consensus 187 l~~~~~~l~~l~vn~erm~~~l--~~~~~~at~la~~L~~~Gi~~r~Ah~~v~~~v~~a~~~g~~l~e~~~~~~~~~~~~ 264 (314)
|..+..++++|.||+++|.+|+ ..++++++.++..|+++|++|++||++|++.+..+.++++.+.++.+.+......+
T Consensus 331 L~~~~~vl~~L~v~~~~m~~nL~~~~gli~se~v~~~l~~~g~~Re~a~elvr~~a~~~~~~~~~~~~~~l~~~~v~~~~ 410 (438)
T COG0015 331 LNRLLNVLEGLEVNPERMRRNLDLTLGLIASERVMLALRKKGMGREEAHELVREKAMKAWEQGKEFLELLLADERVTKYL 410 (438)
T ss_pred HHHHHHHHHhCeeCHHHHHHHHhhccchhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhccchHHHhccchhhhccC
Confidence 9999999999999999999999 57899999999999999999999999999999999999999988877776655677
Q ss_pred CHHHHhhcCChhHhhhcccCCCCCcHHHHHHHH
Q psy15027 265 IGEDIFEILSVEKSVEHKDHVGATAPSQVQHSV 297 (314)
Q Consensus 265 ~~~~l~~~ldp~~~v~~r~~~gG~a~~~v~~~i 297 (314)
+++++..++||. .|.|.+.+.+++++
T Consensus 411 ~~~~~~~~~dp~-------~y~G~a~~i~~r~~ 436 (438)
T COG0015 411 SEEELLELLDPA-------NYLGRADEIVERVV 436 (438)
T ss_pred cHHHHHHcCCHH-------HHhhHHHHHHHHHh
Confidence 899999999999 88899977777665
No 19
>TIGR00928 purB adenylosuccinate lyase. This family consists of adenylosuccinate lyase, the enzyme that catalyzes step 8 in the purine biosynthesis pathway for de novo synthesis of IMP and also the final reaction in the two-step sequence from IMP to AMP.
Probab=100.00 E-value=1.3e-44 Score=356.87 Aligned_cols=241 Identities=19% Similarity=0.183 Sum_probs=210.9
Q ss_pred cccccccCCCCccccHHHHHHHcCCCCCCCCcchhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceeeccCC-
Q psy15027 42 SGDENGGGGTTHPIDRYRTTELLHFDSPSGNSLDSISDRDFIIEFLSHCSITIMHLSRISEEFIIFMNPQFDYVSLPDS- 120 (314)
Q Consensus 42 ~G~~aA~~gt~~~idr~~la~~LGf~~~~~ns~d~~~~RD~~~e~~~~la~la~~L~kiA~Dl~l~ss~e~gei~lp~~- 120 (314)
+||..++.... +..++++|++|||+.+..++ ++++||++++++++++.++++|+|||+||++|+++||+|+.+|..
T Consensus 187 ~Gt~~~~~~~~-~~~~~~~a~~LGl~~~~~~~--~~~~rD~~~e~~~~l~~la~~L~ria~Dl~l~s~~~~~el~~~~~~ 263 (435)
T TIGR00928 187 VGTHAAAYPLV-EEVEERVTEFLGLKPVPIST--QIEPRDRHAELLDALALLATTLEKFAVDIRLLQRTEHFEVEEPFGK 263 (435)
T ss_pred hhhHhhccccH-HHHHHHHHHhcCCCCCCCCc--cccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccceecccCC
Confidence 66665553322 44458999999999987553 679999999999999999999999999999999999999999874
Q ss_pred CCCCCCCCCCCCChhHHHHHHHHHhhhhhhHHHHHHHHhcCcccccchhhhcc---hhHHHHHHHHHHHHHHHHhchhcc
Q psy15027 121 LLTGSSIMPQKKNPDILELIRGKTGRVYGNLFNMLTIMKSQPLAYNKDMQECK---QPLVDSIETLNMCLTAFKLILDNV 197 (314)
Q Consensus 121 ~~~GSSiMPqKrNP~~~E~ir~~a~~v~g~~~~~l~~~~~~~~~~~rDl~~~~---~~L~~~~~~~~~~l~~~~~~l~~l 197 (314)
.++|||||||||||+.+|+|++++.++.|+...++. ++|++|+||++.+. ..|++++..+..++..+..+|++|
T Consensus 264 ~~~GSS~MP~K~NP~~~E~i~~~a~~~~g~~~~~~~---~~~~~~erd~~~~~~~~~~l~~~~~~~~~~l~~~~~~l~~l 340 (435)
T TIGR00928 264 GQVGSSAMPHKRNPIDFENVCGLARVIRSVLSPALE---NVPLWHERDLTDSSVERIILPDSFILADIMLKTTLKVVKKL 340 (435)
T ss_pred CCCCcCCCCcCcCcHHHHHHHHHHHHHHHHHHHHHH---HhhHHhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 489999999999999999999999999999988765 45889999998754 369999999999999999999999
Q ss_pred eechhhhHHhhc--cchhHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHH-cCCChhHhhHHHHHhcccCCHHHHhhcCC
Q psy15027 198 KFNTGRMYVSAG--EGFSIATDIADYLAKKKIPFRSCHEIVGKIIKFCVQ-EAKPLDQLSLEELKAIHEDIGEDIFEILS 274 (314)
Q Consensus 198 ~vn~erm~~~l~--~~~~~at~la~~L~~~Gi~~r~Ah~~v~~~v~~a~~-~g~~l~e~~~~~~~~~~~~~~~~l~~~ld 274 (314)
+||++||++++. .++++++++++.|+++|+|||+||++|+++++.+.+ +|.++.++..++......+++++++.++|
T Consensus 341 ~v~~~rm~~~l~~~~~~~~a~~la~~L~~~g~g~~~Ah~~v~~~~~~a~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~ld 420 (435)
T TIGR00928 341 VVNPENILRNLELTLGLIASERVLIALVERGMGREEAYEIVRELAMGAAEVDEPDLLEFLLADERITKYLKEEELAELLD 420 (435)
T ss_pred EECHHHHHHHHHhccChHhHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHcccccHHHHHhhCccchhhcCHHHHHHcCC
Confidence 999999999996 456689999999999999999999999999999999 99999999887644334567889999999
Q ss_pred hhHhhhcccCCCCCcHHHHHH
Q psy15027 275 VEKSVEHKDHVGATAPSQVQH 295 (314)
Q Consensus 275 p~~~v~~r~~~gG~a~~~v~~ 295 (314)
|. .|.|.+++.+++
T Consensus 421 p~-------~~~~~a~~~~~~ 434 (435)
T TIGR00928 421 PE-------TYIGNAREIVER 434 (435)
T ss_pred HH-------HHhChHHHHHHh
Confidence 99 667888887765
No 20
>cd03302 Adenylsuccinate_lyase_2 Adenylsuccinate lyase (ASL)_subgroup 2. This subgroup contains mainly eukaryotic proteins similar to ASL, a member of the Lyase class I family. Members of this family for the most part catalyze similar beta-elimination reactions in which a C-N or C-O bond is cleaved with the release of fumarate as one of the products. These proteins are active as tetramers. The four active sites of the homotetrameric enzyme are each formed by residues from three different subunits. ASL catalyzes two steps in the de novo purine biosynthesis: the conversion of 5-aminoimidazole-(N-succinylocarboxamide) ribotide (SAICAR) into 5-aminoimidazole-4-carboxamide ribotide (AICAR) and, the conversion of adenylsuccinate (SAMP) into adenosine monophosphate (AMP). ASL deficiency has been linked to several pathologies including psychomotor retardation with autistic features, epilepsy and muscle wasting.
Probab=100.00 E-value=8.9e-44 Score=350.54 Aligned_cols=230 Identities=14% Similarity=0.085 Sum_probs=202.4
Q ss_pred ccccccccCCCCccccH-------HHHHHHcCCCCCCCCcchhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc
Q psy15027 41 ESGDENGGGGTTHPIDR-------YRTTELLHFDSPSGNSLDSISDRDFIIEFLSHCSITIMHLSRISEEFIIFMNPQFD 113 (314)
Q Consensus 41 ~~G~~aA~~gt~~~idr-------~~la~~LGf~~~~~ns~d~~~~RD~~~e~~~~la~la~~L~kiA~Dl~l~ss~e~g 113 (314)
.+||+++++. .+++|| ++++++|||..+. +..+++.+||+++|+++++++++++|+|||+|+++|++ +|
T Consensus 185 avGt~a~~~~-~~~~dr~~~~~v~~~~a~~LGl~~~~-~~~~~v~~rD~~~e~~~~la~~a~~L~riA~Dl~l~~s--~~ 260 (436)
T cd03302 185 TTGTQASFLD-LFEGDHDKVEALDELVTKKAGFKKVY-PVTGQTYSRKVDIDVLNALSSLGATAHKIATDIRLLAN--LK 260 (436)
T ss_pred hhhhhHHHHh-cCCchHHHHHHHHHHHHHHcCCCCCC-CchhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--Cc
Confidence 3888877743 467665 6899999999874 33335699999999999999999999999999999999 99
Q ss_pred eeeccCC-CCCCCCCCCCCCChhHHHHHHHHHhhhhhhHHHHHHHHhcCcccccchhhhc---chhHHHHHHHHHHHHHH
Q psy15027 114 YVSLPDS-LLTGSSIMPQKKNPDILELIRGKTGRVYGNLFNMLTIMKSQPLAYNKDMQEC---KQPLVDSIETLNMCLTA 189 (314)
Q Consensus 114 ei~lp~~-~~~GSSiMPqKrNP~~~E~ir~~a~~v~g~~~~~l~~~~~~~~~~~rDl~~~---~~~L~~~~~~~~~~l~~ 189 (314)
|+.+|.. .++|||||||||||+.+|+++++|+.+.|+...++.... ..+||||+..+ +..+++++..+..++..
T Consensus 261 el~e~~~~g~~GSS~MPhKrNPv~~E~i~~~a~~~~g~~~~~~~~~~--~~~~Erd~~~~~~~~~~l~~~~~~~~~~l~~ 338 (436)
T cd03302 261 EVEEPFEKGQIGSSAMPYKRNPMRSERCCSLARHLMNLASNAAQTAS--TQWFERTLDDSANRRIAIPEAFLAADAILIT 338 (436)
T ss_pred eecccccCCCCCcccCCCccCcHHHHHHHHHHHHHHhhHHHHHHHhh--ccccccCCchhHHHHHHHHHHHHHHHHHHHH
Confidence 9999974 489999999999999999999999999999999986544 35789998643 45799999999999999
Q ss_pred HHhchhcceechhhhHHhhcc--chhHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHc------CCChhHhhHHHHHhc
Q psy15027 190 FKLILDNVKFNTGRMYVSAGE--GFSIATDIADYLAKKKIPFRSCHEIVGKIIKFCVQE------AKPLDQLSLEELKAI 261 (314)
Q Consensus 190 ~~~~l~~l~vn~erm~~~l~~--~~~~at~la~~L~~~Gi~~r~Ah~~v~~~v~~a~~~------g~~l~e~~~~~~~~~ 261 (314)
+..+|++|+||++||++++.. ++++++++++.|+++|+|||+||++|++++.++.++ +.+|.+++.+++. +
T Consensus 339 ~~~~l~~l~v~~~rm~~~l~~~~g~~~se~~~~~L~~~g~~~~~Ah~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~ 417 (436)
T cd03302 339 LQNISEGLVVYPKVIERHIRQELPFMATENIIMAAVKAGGDRQDAHERIRVLSHQAAAVVKQEGGDNDLIERIKNDAY-F 417 (436)
T ss_pred HHHHHcCCEECHHHHHHHHHhccChHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhhcccCCCCHHHHHhcCCC-c
Confidence 999999999999999999965 688899999999999999999999999999999999 9999999988754 3
Q ss_pred ccCCHHHHhhcCChhHh
Q psy15027 262 HEDIGEDIFEILSVEKS 278 (314)
Q Consensus 262 ~~~~~~~l~~~ldp~~~ 278 (314)
.. ++++|+.++||+.+
T Consensus 418 ~~-~~~~l~~~~dp~~~ 433 (436)
T cd03302 418 KP-IWDELDALLDPKTF 433 (436)
T ss_pred CC-CHHHHHHHhCHHhh
Confidence 44 78889999999943
No 21
>PRK06389 argininosuccinate lyase; Provisional
Probab=100.00 E-value=4.1e-43 Score=342.45 Aligned_cols=195 Identities=26% Similarity=0.310 Sum_probs=180.8
Q ss_pred ccccCCCCccccHHHHHHHcCCCCCCCCcchhhhchHH-HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceeeccCCCCC
Q psy15027 45 ENGGGGTTHPIDRYRTTELLHFDSPSGNSLDSISDRDF-IIEFLSHCSITIMHLSRISEEFIIFMNPQFDYVSLPDSLLT 123 (314)
Q Consensus 45 ~aA~~gt~~~idr~~la~~LGf~~~~~ns~d~~~~RD~-~~e~~~~la~la~~L~kiA~Dl~l~ss~e~gei~lp~~~~~ 123 (314)
.++++|+++++||+++|++|||+.+..|+++++.++|+ ++++++++++++.+|+|||+|+++|+++ |++++|+.+++
T Consensus 191 aga~~Gt~~~idr~~~A~lLGf~~~~~n~~~a~~~~~~~~~e~~~~la~la~~LsRiA~Dl~l~ss~--g~ielpd~~~~ 268 (434)
T PRK06389 191 YGSGYGSPSSVKFNQMSELLGMEKNIKNPVYSSSLYIKTIENISYLISSLAVDLSRICQDIIIYYEN--GIITIPDEFTT 268 (434)
T ss_pred hhhhhcCCchhhHHHHHHHhCCCCCCCCCchhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHcCC--CEEEecCCCCC
Confidence 47778899999999999999999999998887666655 8899999999999999999999999997 88889998899
Q ss_pred CCCCCCCCCChhHHHHHHHHHhhhhhhHHHHHHHHhcCcccccchhhhcchhHHHHHHHHHHHHHHHHhchhcceechhh
Q psy15027 124 GSSIMPQKKNPDILELIRGKTGRVYGNLFNMLTIMKSQPLAYNKDMQECKQPLVDSIETLNMCLTAFKLILDNVKFNTGR 203 (314)
Q Consensus 124 GSSiMPqKrNP~~~E~ir~~a~~v~g~~~~~l~~~~~~~~~~~rDl~~~~~~L~~~~~~~~~~l~~~~~~l~~l~vn~er 203 (314)
|||||||||||+.+|.++++++++.|.++.++...+|+|++|++|+|+.++.+++++..+..+|..+..++++++||+++
T Consensus 269 GSSiMPqKrNP~~~E~ir~~a~~v~g~~~~~~~~~~n~~~~y~~D~q~~~~~~~~~~~~~~~~l~l~~~~i~~l~~~~~~ 348 (434)
T PRK06389 269 GSSLMPNKRNPDYLELFQGIAAESISVLSFIAQSELNKTTGYHRDFQIVKDSTISFINNFERILLGLPDLLYNIKFEITN 348 (434)
T ss_pred CCCCCCCCcCcHHHHHHHHHHHHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCeECHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHhhccchhHHHHHHHHHHHcCCChHHHHHHHHHHHHHH
Q psy15027 204 MYVSAGEGFSIATDIADYLAKKKIPFRSCHEIVGKIIKFC 243 (314)
Q Consensus 204 m~~~l~~~~~~at~la~~L~~~Gi~~r~Ah~~v~~~v~~a 243 (314)
.+.+ .++.+||++|++++++|+|||+||++|+++|+.+
T Consensus 349 -~~a~-~~~~~ATdlA~~lv~~GipFR~AH~~Vg~~V~~~ 386 (434)
T PRK06389 349 -EKNI-KNSVYATYNAWLAFKNGMDWKSAYAYIGNKIREG 386 (434)
T ss_pred -Hhhc-cCCCcHHHHHHHHHHcCCCHHHHHHHHHHHHHhc
Confidence 4554 4445599999988888999999999999999874
No 22
>PRK12273 aspA aspartate ammonia-lyase; Provisional
Probab=100.00 E-value=8.7e-43 Score=346.12 Aligned_cols=209 Identities=22% Similarity=0.283 Sum_probs=195.3
Q ss_pred HHHHHHcCCCC-CCCCcchhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC---CceeeccCCCCCCCCCCCCCCC
Q psy15027 58 YRTTELLHFDS-PSGNSLDSISDRDFIIEFLSHCSITIMHLSRISEEFIIFMNPQ---FDYVSLPDSLLTGSSIMPQKKN 133 (314)
Q Consensus 58 ~~la~~LGf~~-~~~ns~d~~~~RD~~~e~~~~la~la~~L~kiA~Dl~l~ss~e---~gei~lp~~~~~GSSiMPqKrN 133 (314)
+++|++|||.. +..|++|++++||+++|+++++++++++|+|||+|+++|+|.| ||||.+|+ +++||||||||||
T Consensus 250 ~~~A~~LGf~~~~~~n~~da~~~rD~~~e~~~~la~la~~L~rlA~Di~llss~e~~e~gev~lp~-~~~GSSiMPqKrN 328 (472)
T PRK12273 250 EKLAEITGLPLVPAEDLIEATQDTGAFVEVSGALKRLAVKLSKICNDLRLLSSGPRAGLNEINLPA-VQAGSSIMPGKVN 328 (472)
T ss_pred HHHHHHcCCCcccCcCHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccCceEEECCC-CCCcCCCCCcccC
Confidence 35799999995 6679999999999999999999999999999999999999655 99999996 8999999999999
Q ss_pred hhHHHHHHHHHhhhhhhHHHHHHHHhcCcccccchhhhcchhHHHHHHHHHHHHHHHH-hchhcceechhhhHHhhccch
Q psy15027 134 PDILELIRGKTGRVYGNLFNMLTIMKSQPLAYNKDMQECKQPLVDSIETLNMCLTAFK-LILDNVKFNTGRMYVSAGEGF 212 (314)
Q Consensus 134 P~~~E~ir~~a~~v~g~~~~~l~~~~~~~~~~~rDl~~~~~~L~~~~~~~~~~l~~~~-~~l~~l~vn~erm~~~l~~~~ 212 (314)
|+.+|++|++++++.|++.+++.+++++|++|++|.+..++.+++++..+..++..+. .+|++|+||++||++++..++
T Consensus 329 P~~~E~ir~~a~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~l~v~~erm~~~l~~~~ 408 (472)
T PRK12273 329 PVIPEVVNQVCFQVIGNDTTVTMAAEAGQLELNVMEPVIAYNLFESISILTNACRTLREKCIDGITANEERCREYVENSI 408 (472)
T ss_pred cHHHHHHHHHHHHHhhhHHHHHHHHHcCCchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHccCEECHHHHHHHHHhCC
Confidence 9999999999999999999999999999999999998889999999999999999999 599999999999999999999
Q ss_pred hHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCChhHhhHHHHHhcccCCHHHHhhcCChhHhhh
Q psy15027 213 SIATDIADYLAKKKIPFRSCHEIVGKIIKFCVQEAKPLDQLSLEELKAIHEDIGEDIFEILSVEKSVE 280 (314)
Q Consensus 213 ~~at~la~~L~~~Gi~~r~Ah~~v~~~v~~a~~~g~~l~e~~~~~~~~~~~~~~~~l~~~ldp~~~v~ 280 (314)
.++++++++| +|++++++++.|.++|+++.++..++ ..++++++++++||+.+++
T Consensus 409 ~~~t~LA~~L---------~~~~a~~lv~~a~~~g~~l~~~~~~~----~~l~~~el~~~ldp~~~v~ 463 (472)
T PRK12273 409 GIVTALNPYI---------GYENAAEIAKEALETGKSVRELVLER----GLLTEEELDDILSPENMTH 463 (472)
T ss_pred chHHHHHHHH---------HHHHHHHHHHHHHHhCCCHHHHHhhc----CCCCHHHHHHHcCHHHhCC
Confidence 9999999998 78899999999999999999988765 3456889999999998875
No 23
>PRK13353 aspartate ammonia-lyase; Provisional
Probab=100.00 E-value=7.8e-42 Score=339.42 Aligned_cols=217 Identities=21% Similarity=0.252 Sum_probs=199.0
Q ss_pred CCCccccHH-------HHHHHcCCC-CCCCCcchhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC---CCceeecc
Q psy15027 50 GTTHPIDRY-------RTTELLHFD-SPSGNSLDSISDRDFIIEFLSHCSITIMHLSRISEEFIIFMNP---QFDYVSLP 118 (314)
Q Consensus 50 gt~~~idr~-------~la~~LGf~-~~~~ns~d~~~~RD~~~e~~~~la~la~~L~kiA~Dl~l~ss~---e~gei~lp 118 (314)
||++++||+ +++++|||+ .+..|++|++++||+++++++++++++++|+|||+||++|+|+ |||||.+|
T Consensus 233 GT~~~~~~~~~~~~~~~la~~LG~~~~~~~n~~~a~~~rD~~~e~~~~la~la~~l~riA~Dl~llss~pr~e~gev~lp 312 (473)
T PRK13353 233 GTGLNADPEYIERVVKHLAAITGLPLVGAEDLVDATQNTDAFVEVSGALKVCAVNLSKIANDLRLLSSGPRTGLGEINLP 312 (473)
T ss_pred cCCccCChhHHHHHHHHHHHHhCCCCccccchHhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCceEEECC
Confidence 455555554 378999999 4677999999999999999999999999999999999999965 99999999
Q ss_pred CCCCCCCCCCCCCCChhHHHHHHHHHhhhhhhHHHHHHHHhcCcccccchhhhcchhHHHHHHHHHHHHHHHH-hchhcc
Q psy15027 119 DSLLTGSSIMPQKKNPDILELIRGKTGRVYGNLFNMLTIMKSQPLAYNKDMQECKQPLVDSIETLNMCLTAFK-LILDNV 197 (314)
Q Consensus 119 ~~~~~GSSiMPqKrNP~~~E~ir~~a~~v~g~~~~~l~~~~~~~~~~~rDl~~~~~~L~~~~~~~~~~l~~~~-~~l~~l 197 (314)
+ +++|||||||||||+.+|.++++|+++.|+...++.+++++|++|+++.+...+.+++++..+..++..+. .+|++|
T Consensus 313 ~-~~~GSSiMPqKrNP~~~E~ir~~a~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gL 391 (473)
T PRK13353 313 A-VQPGSSIMPGKVNPVMPEVVNQIAFQVIGNDVTITLAAEAGQLELNVMEPVIAFNLLESISILTNACRAFTDNCVKGI 391 (473)
T ss_pred C-CCCCCCCCCCCcCChHHHHHHHHHHHHHhHHHHHHHHHHcCChhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHccC
Confidence 9 99999999999999999999999999999999999999999999999888888899999999998888887 899999
Q ss_pred eechhhhHHhhccchhHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCChhHhhHHHHHhcccCCHHHHhhcCChhH
Q psy15027 198 KFNTGRMYVSAGEGFSIATDIADYLAKKKIPFRSCHEIVGKIIKFCVQEAKPLDQLSLEELKAIHEDIGEDIFEILSVEK 277 (314)
Q Consensus 198 ~vn~erm~~~l~~~~~~at~la~~L~~~Gi~~r~Ah~~v~~~v~~a~~~g~~l~e~~~~~~~~~~~~~~~~l~~~ldp~~ 277 (314)
+||+++|++++..++.+++++++.| ||++|+++++.|.++|+++.++..++ ..++++++++++||+.
T Consensus 392 ~vn~erm~~~l~~~~~l~t~La~~L---------gh~~v~~~~~~a~~~g~~l~e~~~~~----~~~~~~el~~~ldp~~ 458 (473)
T PRK13353 392 EANEERCKEYVEKSVGIATALNPHI---------GYEAAARIAKEAIATGRSVRELALEN----GLLSEEELDLILDPFR 458 (473)
T ss_pred EECHHHHHHHHHhCcchHHHHHHHH---------HHHHHHHHHHHHHHhCCCHHHHHhhc----CCCCHHHHHHHcCHHH
Confidence 9999999999999999999999998 79999999999999999999988765 3456888999999998
Q ss_pred hhh
Q psy15027 278 SVE 280 (314)
Q Consensus 278 ~v~ 280 (314)
+++
T Consensus 459 ~v~ 461 (473)
T PRK13353 459 MTH 461 (473)
T ss_pred hcC
Confidence 874
No 24
>cd01360 Adenylsuccinate_lyase_1 Adenylsuccinate lyase (ASL)_subgroup 1. This subgroup contains bacterial and archeal proteins similar to ASL, a member of the Lyase class I family. Members of this family for the most part catalyze similar beta-elimination reactions in which a C-N or C-O bond is cleaved with the release of fumarate as one of the products. These proteins are active as tetramers. The four active sites of the homotetrameric enzyme are each formed by residues from three different subunits. ASL catalyzes two steps in the de novo purine biosynthesis: the conversion of 5-aminoimidazole-(N-succinylocarboxamide) ribotide (SAICAR) into 5-aminoimidazole-4-carboxamide ribotide (AICAR) and, the conversion of adenylsuccinate (SAMP) into adenosine monophosphate (AMP).
Probab=100.00 E-value=6.7e-42 Score=332.81 Aligned_cols=194 Identities=24% Similarity=0.288 Sum_probs=173.2
Q ss_pred cccCCCcccccccccCCCCccccHHHHHHHcCCCCCCCCcchhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc
Q psy15027 34 GKSGGGSESGDENGGGGTTHPIDRYRTTELLHFDSPSGNSLDSISDRDFIIEFLSHCSITIMHLSRISEEFIIFMNPQFD 113 (314)
Q Consensus 34 ~~~~~~~~~G~~aA~~gt~~~idr~~la~~LGf~~~~~ns~d~~~~RD~~~e~~~~la~la~~L~kiA~Dl~l~ss~e~g 113 (314)
.++||+ +||.++++ +.+|++++++|||+.+..|+ ++++||+++|+++++++++++|+|||+|+++|+++|||
T Consensus 175 ~~lgga--~Gt~~~~~----~~~~~~~a~~LG~~~~~~~~--~~~~rD~~~e~~~~la~~~~~L~ria~Dl~~~s~~e~g 246 (387)
T cd01360 175 GKISGA--VGTYANLG----PEVEERVAEKLGLKPEPIST--QVIQRDRHAEYLSTLALIASTLEKIATEIRHLQRTEVL 246 (387)
T ss_pred hccchH--hhcCccCC----HHHHHHHHHHcCCCCCCCCC--cccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Confidence 455553 45544442 35799999999999876663 56999999999999999999999999999999999999
Q ss_pred eeeccCC-CCCCCCCCCCCCChhHHHHHHHHHhhhhhhHHHHHHHHhcCcccccchhhhc---chhHHHHHHHHHHHHHH
Q psy15027 114 YVSLPDS-LLTGSSIMPQKKNPDILELIRGKTGRVYGNLFNMLTIMKSQPLAYNKDMQEC---KQPLVDSIETLNMCLTA 189 (314)
Q Consensus 114 ei~lp~~-~~~GSSiMPqKrNP~~~E~ir~~a~~v~g~~~~~l~~~~~~~~~~~rDl~~~---~~~L~~~~~~~~~~l~~ 189 (314)
||.+|.. .++|||||||||||+.+|+++++++.+.|++.. +++++|++|+||++.+ |..+++++..+..++..
T Consensus 247 el~e~~~~~~~GSS~MPqKrNP~~~E~i~~~a~~~~g~~~~---~~~~~~~~~~rd~~~~~~~~~~l~~~~~~~~~~l~~ 323 (387)
T cd01360 247 EVEEPFSKGQKGSSAMPHKRNPILSENICGLARVIRSNVIP---ALENVALWHERDISHSSVERVILPDATILLDYILRR 323 (387)
T ss_pred ceecCCCCCCCCcCCCCCCCCCHHHHHHHHHHHHHHHHHHH---HHhhhHHhcCCCcchhHHHHHHHHHHHHHHHHHHHH
Confidence 9999873 579999999999999999999999999999864 4567889999999876 45999999999999999
Q ss_pred HHhchhcceechhhhHHhhc--cchhHHHHHHHHHHHcCCChHHHHHHHHH
Q psy15027 190 FKLILDNVKFNTGRMYVSAG--EGFSIATDIADYLAKKKIPFRSCHEIVGK 238 (314)
Q Consensus 190 ~~~~l~~l~vn~erm~~~l~--~~~~~at~la~~L~~~Gi~~r~Ah~~v~~ 238 (314)
+..++++|+||+++|++++. .+++++|++++.|+++|+|||+||++|++
T Consensus 324 ~~~~l~~l~v~~~rm~~~l~~~~~~~~ae~la~~L~~~g~~~r~Ah~~V~~ 374 (387)
T cd01360 324 MTRVLENLVVYPENMRRNLNLTKGLIFSQRVLLALVEKGMSREEAYEIVQR 374 (387)
T ss_pred HHHHHccCEECHHHHHHHHHhccCHHHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 99999999999999999996 49999999999999999999999999998
No 25
>cd01595 Adenylsuccinate_lyase_like Adenylsuccinate lyase (ASL)_like. This group contains ASL, prokaryotic-type 3-carboxy-cis,cis-muconate cycloisomerase (pCMLE), and related proteins. These proteins are members of the Lyase class I family. Members of this family for the most part catalyze similar beta-elimination reactions in which a C-N or C-O bond is cleaved with the release of fumarate as one of the products. These proteins are active as tetramers. The four active sites of the homotetrameric enzyme are each formed by residues from three different subunits. ASL catalyzes two steps in the de novo purine biosynthesis: the conversion of 5-aminoimidazole-(N-succinylocarboxamide) ribotide (SAICAR) into 5-aminoimidazole-4-carboxamide ribotide (AICAR) and; the conversion of adenylsuccinate (SAMP) into adenosine monophosphate (AMP). pCMLE catalyzes the cyclization of 3-carboxy-cis,cis-muconate (3CM) to 4-carboxy-muconolactone, in the beta-ketoadipate pathway. ASL deficiency has been linked t
Probab=100.00 E-value=1.8e-41 Score=329.33 Aligned_cols=191 Identities=24% Similarity=0.255 Sum_probs=174.4
Q ss_pred ccccccccCCCCccccHHHHHHHcCCCCCCCCcchhhh-chHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceeeccC
Q psy15027 41 ESGDENGGGGTTHPIDRYRTTELLHFDSPSGNSLDSIS-DRDFIIEFLSHCSITIMHLSRISEEFIIFMNPQFDYVSLPD 119 (314)
Q Consensus 41 ~~G~~aA~~gt~~~idr~~la~~LGf~~~~~ns~d~~~-~RD~~~e~~~~la~la~~L~kiA~Dl~l~ss~e~gei~lp~ 119 (314)
.+||.++++. ..+++|+++|++|||.. |.++|+. +||+++|+++++++++++|+|||+|+++|+|+|||||.+|+
T Consensus 178 a~G~g~~~~~-~~~~~~~~~a~~LGl~~---~~~~~~~~~rd~~~e~~~~l~~~~~~l~ria~Dl~~~~s~e~gev~~~~ 253 (381)
T cd01595 178 AVGTHASLGP-KGPEVEERVAEKLGLKV---PPITTQIEPRDRIAELLSALALIAGTLEKIATDIRLLQRTEIGEVEEPF 253 (381)
T ss_pred HhhhHhhcCC-cHHHHHHHHHHHcCCCC---CCCCCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccceeccc
Confidence 4566666644 45788999999999954 4566866 99999999999999999999999999999999999999998
Q ss_pred -CCCCCCCCCCCCCChhHHHHHHHHHhhhhhhHHHHHHHHhcCcccccchhhhcc---hhHHHHHHHHHHHHHHHHhchh
Q psy15027 120 -SLLTGSSIMPQKKNPDILELIRGKTGRVYGNLFNMLTIMKSQPLAYNKDMQECK---QPLVDSIETLNMCLTAFKLILD 195 (314)
Q Consensus 120 -~~~~GSSiMPqKrNP~~~E~ir~~a~~v~g~~~~~l~~~~~~~~~~~rDl~~~~---~~L~~~~~~~~~~l~~~~~~l~ 195 (314)
.+++|||||||||||+.+|+++++++++.|++..++.++ +++|+||++.++ ..+++++..+..++..+..+++
T Consensus 254 ~~~~~GSS~MPqK~NP~~~E~i~~~a~~~~g~~~~~~~~~---~~~~erd~~~~~~~~~~l~~~~~~~~~~l~~~~~~l~ 330 (381)
T cd01595 254 EKGQVGSSTMPHKRNPIDSENIEGLARLVRALAAPALENL---VQWHERDLSDSSVERNILPDAFLLLDAALSRLQGLLE 330 (381)
T ss_pred cCCCCCCccCCCcCCcHHHHHHHHHHHHHHHHHHHHHHhh---hHhhccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 579999999999999999999999999999999998876 789999998764 7999999999999999999999
Q ss_pred cceechhhhHHhhcc--chhHHHHHHHHHHHcCCChHHHHHHHHH
Q psy15027 196 NVKFNTGRMYVSAGE--GFSIATDIADYLAKKKIPFRSCHEIVGK 238 (314)
Q Consensus 196 ~l~vn~erm~~~l~~--~~~~at~la~~L~~~Gi~~r~Ah~~v~~ 238 (314)
+|+||+++|++++.. +++++|.+++.|+++|+|||+||++|++
T Consensus 331 ~l~v~~~~m~~~l~~~~g~~~ae~~~~~L~~~g~g~~~Ah~~v~~ 375 (381)
T cd01595 331 GLVVNPERMRRNLDLTWGLILSEAVMMALAKKGLGRQEAYELVKE 375 (381)
T ss_pred CCEECHHHHHHHHHhccCHHHHHHHHHHHHHhCCCHhHHHHHHHH
Confidence 999999999999976 6789999999999999999999999998
No 26
>cd01357 Aspartase Aspartase. This subgroup contains Escherichia coli aspartase (L-aspartate ammonia-lyase), Bacillus aspartase and related proteins. It is a member of the Lyase class I family, which includes both aspartase (L-aspartate ammonia-lyase) and fumarase class II enzymes. Members of this family for the most part catalyze similar beta-elimination reactions in which a C-N or C-O bond is cleaved with the release of fumarate as one of the products. These proteins are active as tetramers. The four active sites of the homotetrameric enzyme are each formed by residues from three different subunits. Aspartase catalyzes the reversible deamination of aspartic acid.
Probab=100.00 E-value=7.6e-41 Score=330.66 Aligned_cols=203 Identities=24% Similarity=0.311 Sum_probs=187.3
Q ss_pred HHHHHHcCCCC-CCCCcchhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC---CCceeeccCCCCCCCCCCCCCCC
Q psy15027 58 YRTTELLHFDS-PSGNSLDSISDRDFIIEFLSHCSITIMHLSRISEEFIIFMNP---QFDYVSLPDSLLTGSSIMPQKKN 133 (314)
Q Consensus 58 ~~la~~LGf~~-~~~ns~d~~~~RD~~~e~~~~la~la~~L~kiA~Dl~l~ss~---e~gei~lp~~~~~GSSiMPqKrN 133 (314)
+++|++|||.. +..|++|++++||+++++++++++++++|+|||+|+++|+|. |||||.+|+ +++||||||||||
T Consensus 243 ~~~a~~LGl~~~~~~n~~~a~~~rd~~~e~~~~l~~~a~~L~riA~Di~l~ss~e~~~~gev~~p~-~~~GSSiMPqKrN 321 (450)
T cd01357 243 EKLSEITGLPLKRAENLIDATQNTDAFVEVSGALKRLAVKLSKIANDLRLLSSGPRAGLGEINLPA-VQPGSSIMPGKVN 321 (450)
T ss_pred HHHHHHhCCCCccCcCHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCCceeEECCC-CCCcCCCCCCCcC
Confidence 35999999995 677999999999999999999999999999999999999955 599999995 8999999999999
Q ss_pred hhHHHHHHHHHhhhhhhHHHHHHHHhcCcccccchhhhcchhHHHHHHHHHHHHHHHH-hchhcceechhhhHHhhccch
Q psy15027 134 PDILELIRGKTGRVYGNLFNMLTIMKSQPLAYNKDMQECKQPLVDSIETLNMCLTAFK-LILDNVKFNTGRMYVSAGEGF 212 (314)
Q Consensus 134 P~~~E~ir~~a~~v~g~~~~~l~~~~~~~~~~~rDl~~~~~~L~~~~~~~~~~l~~~~-~~l~~l~vn~erm~~~l~~~~ 212 (314)
|+.+|+|+++|+++.|++..++.+++++|++|+++.+..++.+++++..+..++..+. .+|++|+||++||++++..++
T Consensus 322 P~~~E~ir~~a~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~l~v~~erm~~~l~~~~ 401 (450)
T cd01357 322 PVIPEVVNQVAFQVIGNDLTITMAAEAGQLELNVFEPVIAYNLLESIDILTNAVRTLRERCIDGITANEERCREYVENSI 401 (450)
T ss_pred cHHHHHHHHHHHHHhhHHHHHHHHHhcCcchhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHccCEECHHHHHHHHHhCc
Confidence 9999999999999999999998888899999999988888999999999999999995 999999999999999999999
Q ss_pred hHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCChhHhhHHHHHhcccCCHHHHhhcCC
Q psy15027 213 SIATDIADYLAKKKIPFRSCHEIVGKIIKFCVQEAKPLDQLSLEELKAIHEDIGEDIFEILS 274 (314)
Q Consensus 213 ~~at~la~~L~~~Gi~~r~Ah~~v~~~v~~a~~~g~~l~e~~~~~~~~~~~~~~~~l~~~ld 274 (314)
.++++++++| +|++++++++.|.++|+++.++..++ ..+++++|++++|
T Consensus 402 ~~~t~La~~l---------g~~~a~~~~~~a~~~g~~l~e~~~~~----~~l~~~el~~~~~ 450 (450)
T cd01357 402 GIVTALNPYI---------GYEAAAEIAKEALETGRSVRELVLEE----GLLTEEELDEILS 450 (450)
T ss_pred chHHHHHHHH---------HHHHHHHHHHHHHHhCCCHHHHHHhc----CCCCHHHHHHHhC
Confidence 9999999998 78888889999999999999988765 4567788888775
No 27
>PRK00485 fumC fumarate hydratase; Reviewed
Probab=100.00 E-value=1.4e-40 Score=330.00 Aligned_cols=214 Identities=20% Similarity=0.219 Sum_probs=182.6
Q ss_pred CCCccccHH-------HHHHHcCCC-CCCCCcchhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC---CCceeecc
Q psy15027 50 GTTHPIDRY-------RTTELLHFD-SPSGNSLDSISDRDFIIEFLSHCSITIMHLSRISEEFIIFMNP---QFDYVSLP 118 (314)
Q Consensus 50 gt~~~idr~-------~la~~LGf~-~~~~ns~d~~~~RD~~~e~~~~la~la~~L~kiA~Dl~l~ss~---e~gei~lp 118 (314)
||++++||+ ++|++|||+ .+..|++|++++||+++|+++++++++++|+|||+||++|+|. |||||.+|
T Consensus 233 GT~~~~~~~~~~~v~~~~A~~LGl~~~~~~n~~da~~~rD~~~e~~~~la~la~~L~ria~Dl~l~ss~~~~e~gev~lp 312 (464)
T PRK00485 233 GTGLNAHPGFAERVAEELAELTGLPFVTAPNKFEALAAHDALVEASGALKTLAVSLMKIANDIRWLASGPRCGLGEISLP 312 (464)
T ss_pred cCCccCChhHHHHHHHHHHHHhCCCCccCcCHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCCceEEcC
Confidence 444555554 699999999 7888999999999999999999999999999999999999954 79999999
Q ss_pred CCCCCCCCCCCCCCChhHHHHHHHHHhhhhhhHHHHHHHHhcCcccccchhhh--cchhHHHHHHHHHHHHHHHH-hchh
Q psy15027 119 DSLLTGSSIMPQKKNPDILELIRGKTGRVYGNLFNMLTIMKSQPLAYNKDMQE--CKQPLVDSIETLNMCLTAFK-LILD 195 (314)
Q Consensus 119 ~~~~~GSSiMPqKrNP~~~E~ir~~a~~v~g~~~~~l~~~~~~~~~~~rDl~~--~~~~L~~~~~~~~~~l~~~~-~~l~ 195 (314)
+. ++|||||||||||+++|+|+++++++.|+...++....+.+ |++|... ....+++.+..+..++..+. .+++
T Consensus 313 ~~-~~GSSiMPqKrNP~~~E~ir~~a~~v~g~~~~~~~~~~~~~--~e~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~ 389 (464)
T PRK00485 313 EN-EPGSSIMPGKVNPTQCEALTMVCAQVMGNDAAVTFAGSQGN--FELNVFKPVIAYNFLQSIRLLADAMRSFADHCVV 389 (464)
T ss_pred CC-CCCCCCCCCCCCcHHHHHHHHHHHHHhhhHHHHHHHhccCc--ccccccChHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 85 69999999999999999999999999999999997666655 5555433 33456777777777777776 9999
Q ss_pred cceechhhhHHhhccchhHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCChhHhhHHHHHhcccCCHHHHhhcCCh
Q psy15027 196 NVKFNTGRMYVSAGEGFSIATDIADYLAKKKIPFRSCHEIVGKIIKFCVQEAKPLDQLSLEELKAIHEDIGEDIFEILSV 275 (314)
Q Consensus 196 ~l~vn~erm~~~l~~~~~~at~la~~L~~~Gi~~r~Ah~~v~~~v~~a~~~g~~l~e~~~~~~~~~~~~~~~~l~~~ldp 275 (314)
+|+||+++|++|+..++.+++++++ ++||++||+ +++++.++|.++.+++.+. ..++++++++++||
T Consensus 390 ~l~v~~erm~~~l~~~~~~~t~La~-----~lg~~~A~~----~~~~a~~~g~~l~~~~~~~----~~l~~~~l~~~ldP 456 (464)
T PRK00485 390 GIEPNRERIKELLERSLMLVTALNP-----HIGYDKAAK----IAKKAHKEGLTLKEAALEL----GYLTEEEFDRWVDP 456 (464)
T ss_pred cCEECHHHHHHHHHhCCeeHHHhcc-----ccCHHHHHH----HHHHHHHcCCCHHHHHHHc----CCCCHHHHHHHcCH
Confidence 9999999999999998888887766 489999988 6778888999999887652 55678889999999
Q ss_pred hHhh
Q psy15027 276 EKSV 279 (314)
Q Consensus 276 ~~~v 279 (314)
+.++
T Consensus 457 ~~~~ 460 (464)
T PRK00485 457 EKMT 460 (464)
T ss_pred HHhc
Confidence 9554
No 28
>PRK12425 fumarate hydratase; Provisional
Probab=100.00 E-value=2.3e-40 Score=327.89 Aligned_cols=207 Identities=19% Similarity=0.192 Sum_probs=181.2
Q ss_pred HHHHHcCCCCC-CCCcchhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC---CCceeeccCCCCCCCCCCCCCCCh
Q psy15027 59 RTTELLHFDSP-SGNSLDSISDRDFIIEFLSHCSITIMHLSRISEEFIIFMNP---QFDYVSLPDSLLTGSSIMPQKKNP 134 (314)
Q Consensus 59 ~la~~LGf~~~-~~ns~d~~~~RD~~~e~~~~la~la~~L~kiA~Dl~l~ss~---e~gei~lp~~~~~GSSiMPqKrNP 134 (314)
.+++.|||+.+ ..|++|++++||+++|+++++++++++|+|||+||++|+|. +|||+.+|+. ++|||||||||||
T Consensus 247 ~La~~LG~~~~~~~n~~da~~~rD~~~e~~~~l~~la~~L~kia~Dl~llsS~p~~g~~ei~lp~~-~~GSSiMPqK~NP 325 (464)
T PRK12425 247 ELAALSGLPFVTAPNKFAALAGHEPLVSLSGALKTLAVALMKIANDLRLLGSGPRAGLAEVRLPAN-EPGSSIMPGKVNP 325 (464)
T ss_pred HHHHHhCCCCcccccHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHccCccCCceEEECCCC-CCCCCCCCCCcCC
Confidence 56888899985 78999999999999999999999999999999999999965 4999999965 9999999999999
Q ss_pred hHHHHHHHHHhhhhhhHHHHHHHHhcCcccccchhhhcchhHHHHHHHHH-HHHHHHHhchhcceechhhhHHhhccchh
Q psy15027 135 DILELIRGKTGRVYGNLFNMLTIMKSQPLAYNKDMQECKQPLVDSIETLN-MCLTAFKLILDNVKFNTGRMYVSAGEGFS 213 (314)
Q Consensus 135 ~~~E~ir~~a~~v~g~~~~~l~~~~~~~~~~~rDl~~~~~~L~~~~~~~~-~~l~~~~~~l~~l~vn~erm~~~l~~~~~ 213 (314)
+.+|.++++|+++.|+...++.++++.+++.|+|.+.....+++.+..+. .++..+..|+++|+||+++|++++..+++
T Consensus 326 ~~~E~i~~~a~~v~G~~~~v~~~~~~~~~q~n~~~~~~~~~~l~s~~~l~~~~~~~~~~~i~~l~vn~erm~~~l~~~~~ 405 (464)
T PRK12425 326 TQCEALSMLACQVMGNDATIGFAASQGHLQLNVFKPVIIHNLLQSIRLLADGCRNFQQHCVAGLEPDAEQMAAHLERGLM 405 (464)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHhcCCchhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHccCEECHHHHHHHHHcccH
Confidence 99999999999999999999999998777777777776667888888887 55555569999999999999999999999
Q ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCChhHhhHHHHHhcccCCHHHHhhcCChhHhh
Q psy15027 214 IATDIADYLAKKKIPFRSCHEIVGKIIKFCVQEAKPLDQLSLEELKAIHEDIGEDIFEILSVEKSV 279 (314)
Q Consensus 214 ~at~la~~L~~~Gi~~r~Ah~~v~~~v~~a~~~g~~l~e~~~~~~~~~~~~~~~~l~~~ldp~~~v 279 (314)
++|+|+. ++||++||++ +++|.++|+++.+++.+. ..++++++++++||..++
T Consensus 406 ~at~L~~-----~ig~~~A~~i----a~~a~~~g~~l~e~~~~~----~~l~~~el~~~ldP~~~~ 458 (464)
T PRK12425 406 LVTALNP-----HIGYDKAAEI----AKKAYAEGTTLREAALAL----GYLTDEQFDAWVRPENML 458 (464)
T ss_pred HHHHhhh-----ccCHHHHHHH----HHHHHHhCCCHHHHHHhc----CCCCHHHHHHHcCHHHhc
Confidence 8777732 4899999944 477888999999988763 556788999999999776
No 29
>TIGR00979 fumC_II fumarate hydratase, class II. Putative fumarases from several species (Mycobacterium tuberculosis, Streptomyces coelicolor, Pseudomonas aeruginosa) branch deeply, although within the same branch of a phylogenetic tree rooted by aspartate ammonia-lyase sequences, and score between the trusted and noise cutoffs.
Probab=100.00 E-value=2.5e-39 Score=320.23 Aligned_cols=207 Identities=18% Similarity=0.171 Sum_probs=176.8
Q ss_pred HHHHHcCCCC-CCCCcchhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---CCCceeeccCCCCCCCCCCCCCCCh
Q psy15027 59 RTTELLHFDS-PSGNSLDSISDRDFIIEFLSHCSITIMHLSRISEEFIIFMN---PQFDYVSLPDSLLTGSSIMPQKKNP 134 (314)
Q Consensus 59 ~la~~LGf~~-~~~ns~d~~~~RD~~~e~~~~la~la~~L~kiA~Dl~l~ss---~e~gei~lp~~~~~GSSiMPqKrNP 134 (314)
+++++|||+. +..|+++++++||+++|+++++++++++|+|||+||++|+| +|||||.+|+ .++|||||||||||
T Consensus 246 ~~a~~LGl~~~~~~n~~~~~~~rD~~~e~~~~La~la~~L~kia~Dl~llss~~~~e~gev~~p~-~~~GSSiMP~K~NP 324 (458)
T TIGR00979 246 EIAKETGLPFVTAPNKFEALAAHDAIVEAHGALKTLAASLMKIANDIRWLGSGPRCGLGELFIPE-NEPGSSIMPGKVNP 324 (458)
T ss_pred HHHHHhCCCCeecCcHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCceeEECCC-CCCCCCCCCCCcCC
Confidence 7999999997 67888888899999999999999999999999999999995 5899999998 79999999999999
Q ss_pred hHHHHHHHHHhhhhhhHHHHHHHHhcCcccccchhhhcchhHHHHHHHHHHHHHHHH-hchhcceechhhhHHhhccchh
Q psy15027 135 DILELIRGKTGRVYGNLFNMLTIMKSQPLAYNKDMQECKQPLVDSIETLNMCLTAFK-LILDNVKFNTGRMYVSAGEGFS 213 (314)
Q Consensus 135 ~~~E~ir~~a~~v~g~~~~~l~~~~~~~~~~~rDl~~~~~~L~~~~~~~~~~l~~~~-~~l~~l~vn~erm~~~l~~~~~ 213 (314)
+++|+|+++|+++.|+...++.++++.++.+|.+.......++..+..+..++..+. .||++|+||++||++|+..++.
T Consensus 325 ~~~E~i~~~a~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~v~~erm~~nl~~~~~ 404 (458)
T TIGR00979 325 TQCEALTMVCVQVMGNDATIGFAGSQGNFELNVFKPVIIYNFLQSVRLLSDAMESFRDHCVVGIEPNKERIQQLLNNSLM 404 (458)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHhccchhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHccCEECHHHHHHHHHcCcc
Confidence 999999999999999999999999876555555433322235666666666666666 7999999999999999999888
Q ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCChhHhhHHHHHhcccCCHHHHhhcCChhHhh
Q psy15027 214 IATDIADYLAKKKIPFRSCHEIVGKIIKFCVQEAKPLDQLSLEELKAIHEDIGEDIFEILSVEKSV 279 (314)
Q Consensus 214 ~at~la~~L~~~Gi~~r~Ah~~v~~~v~~a~~~g~~l~e~~~~~~~~~~~~~~~~l~~~ldp~~~v 279 (314)
++++|++ ++||++||+ +++++.++|+++.+++.+. ..+.+++++.++||+.++
T Consensus 405 ~~t~La~-----~lg~~~A~~----~~~~a~~~~~~~~e~~~~~----~~l~~~el~~~ldp~~~~ 457 (458)
T TIGR00979 405 LVTALNP-----HIGYDNAAK----IAKKAHKEGITLKEAALEL----GLLSEEEFDEWVVPEQMV 457 (458)
T ss_pred HHHHhhh-----ccCHHHHHH----HHHHHHHhCCCHHHHHHHc----CCCCHHHHHHHcCHHHhc
Confidence 7777776 389999988 7777788899999888652 456788899999999654
No 30
>PLN00134 fumarate hydratase; Provisional
Probab=100.00 E-value=5.4e-39 Score=317.82 Aligned_cols=217 Identities=20% Similarity=0.220 Sum_probs=181.1
Q ss_pred CCCccccHH-------HHHHHcCCCCC-CCCcchhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC---CCceeecc
Q psy15027 50 GTTHPIDRY-------RTTELLHFDSP-SGNSLDSISDRDFIIEFLSHCSITIMHLSRISEEFIIFMNP---QFDYVSLP 118 (314)
Q Consensus 50 gt~~~idr~-------~la~~LGf~~~-~~ns~d~~~~RD~~~e~~~~la~la~~L~kiA~Dl~l~ss~---e~gei~lp 118 (314)
||+++++|+ ++|++|||+.+ ..|.+|++++||++++++++++.++++|+|||+|+++|+|. |||||.+|
T Consensus 225 GT~~~~~~~~~~~v~~~la~~LGl~~~~~~n~~da~~~rD~~~e~~~~l~~la~~L~kia~Dl~llss~p~~e~gev~lp 304 (458)
T PLN00134 225 GTGLNTKKGFDEKIAAAVAEETGLPFVTAPNKFEALAAHDAFVELSGALNTVAVSLMKIANDIRLLGSGPRCGLGELNLP 304 (458)
T ss_pred cCCccCChhHHHHHHHHHHHHhCCCCCCCccHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCcceEECC
Confidence 356666665 59999999975 67899999999999999999999999999999999999954 99999999
Q ss_pred CCCCCCCCCCCCCCChhHHHHHHHHHhhhhhhHHHHHHHHhcCcccccchhhhcchhHHHHHHHHHHHHHHH-Hhchhcc
Q psy15027 119 DSLLTGSSIMPQKKNPDILELIRGKTGRVYGNLFNMLTIMKSQPLAYNKDMQECKQPLVDSIETLNMCLTAF-KLILDNV 197 (314)
Q Consensus 119 ~~~~~GSSiMPqKrNP~~~E~ir~~a~~v~g~~~~~l~~~~~~~~~~~rDl~~~~~~L~~~~~~~~~~l~~~-~~~l~~l 197 (314)
+ .++|||||||||||+.+|+|+++|+++.|+...++....+.++++|.+.......+++.+..+..++..+ ..|+++|
T Consensus 305 ~-~~~GSSiMP~KrNPv~~E~i~~~a~~v~g~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~l~~l 383 (458)
T PLN00134 305 E-NEPGSSIMPGKVNPTQCEALTMVCAQVMGNHVAITVGGSAGHFELNVFKPLIAYNLLHSIRLLGDASASFRKNCVRGI 383 (458)
T ss_pred C-CCCCCCCCCCCcCCHHHHHHHHHHHHHHhHHHHHHHHHhcCCchhhccchHHHHHHHHHHHHHHHHHHHHHHHHHccC
Confidence 8 4899999999999999999999999999999999976666555544421111125556666666666666 6999999
Q ss_pred eechhhhHHhhccchhHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCChhHhhHHHHHhcccCCHHHHhhcCChhH
Q psy15027 198 KFNTGRMYVSAGEGFSIATDIADYLAKKKIPFRSCHEIVGKIIKFCVQEAKPLDQLSLEELKAIHEDIGEDIFEILSVEK 277 (314)
Q Consensus 198 ~vn~erm~~~l~~~~~~at~la~~L~~~Gi~~r~Ah~~v~~~v~~a~~~g~~l~e~~~~~~~~~~~~~~~~l~~~ldp~~ 277 (314)
+||++||++++..++.+.++|++ ++||++||+ ++++|.++|+++++++.+. ..++++++++++||+.
T Consensus 384 ~vn~erm~~~l~~~~~l~~~La~-----~ig~~~A~~----~~~~a~~~g~~l~e~~~~~----~~l~~~el~~~ldP~~ 450 (458)
T PLN00134 384 EANRERISKLLHESLMLVTALNP-----KIGYDKAAA----VAKKAHKEGTTLKEAALKL----GVLTAEEFDELVVPEK 450 (458)
T ss_pred EECHHHHHHHHHhccchHHHhhh-----ccCHHHHHH----HHHHHHHhCCCHHHHHHhc----CCCCHHHHHHHcCHHH
Confidence 99999999999998888877776 389999988 7777888999999988762 5567889999999996
Q ss_pred hhh
Q psy15027 278 SVE 280 (314)
Q Consensus 278 ~v~ 280 (314)
++.
T Consensus 451 ~~~ 453 (458)
T PLN00134 451 MTG 453 (458)
T ss_pred hcC
Confidence 653
No 31
>PRK08937 adenylosuccinate lyase; Provisional
Probab=100.00 E-value=5.6e-39 Score=288.93 Aligned_cols=188 Identities=22% Similarity=0.252 Sum_probs=174.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCceeeccC-CCCCCCCCCCCCCChhHHHHHHHHHhhhhhhHHHHHHHHhcCcccccc
Q psy15027 89 HCSITIMHLSRISEEFIIFMNPQFDYVSLPD-SLLTGSSIMPQKKNPDILELIRGKTGRVYGNLFNMLTIMKSQPLAYNK 167 (314)
Q Consensus 89 ~la~la~~L~kiA~Dl~l~ss~e~gei~lp~-~~~~GSSiMPqKrNP~~~E~ir~~a~~v~g~~~~~l~~~~~~~~~~~r 167 (314)
+++.++++|+|||+|+++|+++||||+.+|+ .+++|||||||||||+.+|+++++++++.|+...++..+ +.+|+|
T Consensus 22 ~l~~i~~~l~ria~Dl~~~~s~e~gei~~~~~~~~~gSSiMP~K~NP~~~E~i~~~a~~~~g~~~~~~~~~---~~~~er 98 (216)
T PRK08937 22 VLALIATSLEKFANEIRLLQRSEIREVEEPFAKGQKGSSAMPHKRNPIGSERITGLARVLRSYLVTALENV---PLWHER 98 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHhccccceeecccccCCCCCccCCCccCcHHHHHHHHHHHHHHHHHHHHHHHh---HHHhcc
Confidence 8999999999999999999999999999997 679999999999999999999999999999999999876 688999
Q ss_pred hhhhc---chhHHHHHHHHHHHHHHHHhchhcceechhhhHHhhcc--chhHHHHHHHHHHHcCCChHHHHHHHHHHHHH
Q psy15027 168 DMQEC---KQPLVDSIETLNMCLTAFKLILDNVKFNTGRMYVSAGE--GFSIATDIADYLAKKKIPFRSCHEIVGKIIKF 242 (314)
Q Consensus 168 Dl~~~---~~~L~~~~~~~~~~l~~~~~~l~~l~vn~erm~~~l~~--~~~~at~la~~L~~~Gi~~r~Ah~~v~~~v~~ 242 (314)
|++.+ |..+++++..+..++..+..++++++||++||++++.. ++++++++++.|+++|+|||+||++|+++++.
T Consensus 99 d~~~~~~~~~~l~~~~~~~~~~l~~~~~~l~~l~v~~~rm~~~~~~~~~~~~a~~l~~~L~~~g~~~~~Ah~~v~~~~~~ 178 (216)
T PRK08937 99 DLSHSSAERIALPDAFLALDYILNRFVNILENLVVFPENIERNLDKTLGFIATERVLLELVEKGMGREEAHELIREKAME 178 (216)
T ss_pred CCchhHHHhhHHHHHHHHHHHHHHHHHHHHccCEECHHHHHHHHHHhcChHHHHHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 99866 46899999999999999999999999999999999965 99999999999999899999999999999999
Q ss_pred HHHcCCChhHhhHHHHHhcccCCHHHHhhcCChhHhh
Q psy15027 243 CVQEAKPLDQLSLEELKAIHEDIGEDIFEILSVEKSV 279 (314)
Q Consensus 243 a~~~g~~l~e~~~~~~~~~~~~~~~~l~~~ldp~~~v 279 (314)
+.++|+++.++...+.+....+.++++..++||++++
T Consensus 179 ~~~~g~~~~~~~~~~~~~~~~l~~~~l~~~ldp~~~v 215 (216)
T PRK08937 179 AWKNQKDLRELLEADERFTKQLTKEELDELFDPEAFV 215 (216)
T ss_pred HHHhCCCHHHHHHhChHhHhcCCHHHHHHHhCHHhhc
Confidence 9999999999988775544456788899999999553
No 32
>cd01362 Fumarase_classII Class II fumarases. This subgroup contains Escherichia coli fumarase C, human mitochondrial fumarase, and related proteins. It is a member of the Lyase class I family. Members of this family for the most part catalyze similar beta-elimination reactions in which a C-N or C-O bond is cleaved with the release of fumarate as one of the products. These proteins are active as tetramers. The four active sites of the homotetrameric enzyme are each formed by residues from three different subunits. Fumarase catalyzes the reversible hydration/dehydration of fumarate to L-malate during the Krebs cycle.
Probab=100.00 E-value=6.6e-39 Score=317.10 Aligned_cols=228 Identities=20% Similarity=0.203 Sum_probs=191.5
Q ss_pred cccCCCcccccccccCCC-CccccHHHHHHHcCCC-CCCCCcchhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-
Q psy15027 34 GKSGGGSESGDENGGGGT-THPIDRYRTTELLHFD-SPSGNSLDSISDRDFIIEFLSHCSITIMHLSRISEEFIIFMNP- 110 (314)
Q Consensus 34 ~~~~~~~~~G~~aA~~gt-~~~idr~~la~~LGf~-~~~~ns~d~~~~RD~~~e~~~~la~la~~L~kiA~Dl~l~ss~- 110 (314)
.++||+- +||..++... +..+ .+++|++|||. .+..|++|++++||+++++++++++++++|+|||+|+++|+|.
T Consensus 221 ~~lGg~A-~Gt~~~~~~~~~~~v-~~~~a~~LGl~~~~~~n~~da~~~rD~~~e~~~~l~~la~~l~ria~Dl~~~~s~~ 298 (455)
T cd01362 221 LALGGTA-VGTGLNAHPGFAEKV-AAELAELTGLPFVTAPNKFEALAAHDALVEASGALKTLAVSLMKIANDIRWLGSGP 298 (455)
T ss_pred cCcCCee-ccCCccCChhHHHHH-HHHHHHHhCCCCccCCCHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHccCc
Confidence 4566532 4665554322 2233 24899999999 4778899999999999999999999999999999999999954
Q ss_pred --CCceeeccCCCCCCCCCCCCCCChhHHHHHHHHHhhhhhhHHHHHHHHhcCcccccchhhhcchhHHHHHHHHHHHHH
Q psy15027 111 --QFDYVSLPDSLLTGSSIMPQKKNPDILELIRGKTGRVYGNLFNMLTIMKSQPLAYNKDMQECKQPLVDSIETLNMCLT 188 (314)
Q Consensus 111 --e~gei~lp~~~~~GSSiMPqKrNP~~~E~ir~~a~~v~g~~~~~l~~~~~~~~~~~rDl~~~~~~L~~~~~~~~~~l~ 188 (314)
|||||.+|+ .++|||||||||||+.+|+|+++++++.|.+..++.++.+.+++++.|.+.....++..+..+..++.
T Consensus 299 ~~e~gev~~~~-~~~GSS~MPqKrNP~~~E~ir~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 377 (455)
T cd01362 299 RCGLGELSLPE-NEPGSSIMPGKVNPTQCEALTMVAAQVMGNDAAITIAGSSGNFELNVFKPVIIYNLLQSIRLLADACR 377 (455)
T ss_pred cCCCceEECCC-CCCCCCCCCCCCCcHHHHHHHHHHHHHhhhHHHHHHHHhcCchhhhhcchHHHHHHHHHHHHHHHHHH
Confidence 899999998 69999999999999999999999999999999999999998888888887665556666666666666
Q ss_pred HH-HhchhcceechhhhHHhhccchhHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCChhHhhHHHHHhcccCCHH
Q psy15027 189 AF-KLILDNVKFNTGRMYVSAGEGFSIATDIADYLAKKKIPFRSCHEIVGKIIKFCVQEAKPLDQLSLEELKAIHEDIGE 267 (314)
Q Consensus 189 ~~-~~~l~~l~vn~erm~~~l~~~~~~at~la~~L~~~Gi~~r~Ah~~v~~~v~~a~~~g~~l~e~~~~~~~~~~~~~~~ 267 (314)
.+ ..++++|+||++||++++..++.+++++++ ++|||+||++ ++.+.++|+++++++.++ ..+.++
T Consensus 378 ~~~~~~l~~L~v~~~rm~~~l~~~~~~~~~La~-----~ig~~~A~~l----~~~a~~~~~~l~~~~~~~----~~~~~~ 444 (455)
T cd01362 378 SFADKCVAGIEPNRERIAELLERSLMLVTALNP-----HIGYDKAAKI----AKKAHKEGLTLKEAALEL----GYLTEE 444 (455)
T ss_pred HHHHHHHccCEECHHHHHHHHHhcchhHHHhcc-----ccCHHHHHHH----HHHHHHcCCCHHHHHHhc----CCCCHH
Confidence 65 599999999999999999998888777765 5999999888 667788999999988765 456788
Q ss_pred HHhhcCChhH
Q psy15027 268 DIFEILSVEK 277 (314)
Q Consensus 268 ~l~~~ldp~~ 277 (314)
+++.++||.+
T Consensus 445 el~~~~dp~~ 454 (455)
T cd01362 445 EFDRLVDPEK 454 (455)
T ss_pred HHHHhcCccc
Confidence 8999999984
No 33
>PRK09285 adenylosuccinate lyase; Provisional
Probab=100.00 E-value=3.1e-39 Score=319.20 Aligned_cols=239 Identities=15% Similarity=0.156 Sum_probs=196.8
Q ss_pred cccCCCcccccc-ccc---CCC-CccccHHHHHHHcCCCCCCCCcchh-hhchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15027 34 GKSGGGSESGDE-NGG---GGT-THPIDRYRTTELLHFDSPSGNSLDS-ISDRDFIIEFLSHCSITIMHLSRISEEFIIF 107 (314)
Q Consensus 34 ~~~~~~~~~G~~-aA~---~gt-~~~idr~~la~~LGf~~~~~ns~d~-~~~RD~~~e~~~~la~la~~L~kiA~Dl~l~ 107 (314)
+++| +++||+ +++ .+. +..++| .+++.|||.. |+++| +.+||+++++++++++++++|+|||+|+++|
T Consensus 205 g~~~--GAvGt~~a~~~~~~~~~~~~v~~-~~~~~LGL~~---~~~~~~v~~rD~~~e~~~~la~~a~~L~kia~Di~ll 278 (456)
T PRK09285 205 GKIN--GAVGNYNAHLAAYPEVDWHAFSR-EFVESLGLTW---NPYTTQIEPHDYIAELFDAVARFNTILIDLDRDVWGY 278 (456)
T ss_pred hhcc--cccccHHHHhhhcCCccHHHHHH-HHHHHhCCCC---CCCccchhccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444 457887 444 333 246887 5555999975 45668 5999999999999999999999999999999
Q ss_pred hcCCCceeeccC-CCCCCCCCCCCCCChhHHHHHHHHHhhhhhhHHHHHHHHhcCcccccchhhhc--chhHHHHHHHHH
Q psy15027 108 MNPQFDYVSLPD-SLLTGSSIMPQKKNPDILELIRGKTGRVYGNLFNMLTIMKSQPLAYNKDMQEC--KQPLVDSIETLN 184 (314)
Q Consensus 108 ss~e~gei~lp~-~~~~GSSiMPqKrNP~~~E~ir~~a~~v~g~~~~~l~~~~~~~~~~~rDl~~~--~~~L~~~~~~~~ 184 (314)
++ +||+.++. ..++|||+|||||||+.+|+++++++.+.+.+..++..+. .++|+||++.+ ...+|+++..+.
T Consensus 279 ~~--~~e~~e~~~~~~~GSS~MPhKrNPv~~E~i~~~a~~~~~~~~~~~~~~~--~~~~eRD~~~~~~e~~~~~~~~~~~ 354 (456)
T PRK09285 279 IS--LGYFKQKTKAGEIGSSTMPHKVNPIDFENSEGNLGLANALLEHLAAKLP--ISRWQRDLTDSTVLRNLGVAFGYSL 354 (456)
T ss_pred hC--chhhhccCCCCCCCCCCCCCCcCchHHHHHHHHHHHHHHHHHHHHhhcc--HHhhCCcCchhhhhcchHHHHHHHH
Confidence 99 67776654 4699999999999999999999999999998888776541 46799999865 234599999999
Q ss_pred HHHHHHHhchhcceechhhhHHhhccchhHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCChhHh---hHHHHHhc
Q psy15027 185 MCLTAFKLILDNVKFNTGRMYVSAGEGFSIATDIADYLAKKKIPFRSCHEIVGKIIKFCVQEAKPLDQL---SLEELKAI 261 (314)
Q Consensus 185 ~~l~~~~~~l~~l~vn~erm~~~l~~~~~~at~la~~L~~~Gi~~r~Ah~~v~~~v~~a~~~g~~l~e~---~~~~~~~~ 261 (314)
.++..+..+|++|+||++||++|+..++.+.++.++.++++ +++.+||++|+++++.+..++.+|.++ +.+++..
T Consensus 355 ~~l~~~~~~l~~L~V~~~rm~~nl~~~~~~~sE~~~~~l~~-~gr~~A~~~v~~~~~~~~~~~~~~~e~~~~l~~~~~~- 432 (456)
T PRK09285 355 IAYDSLLKGLGKLEVNEARLAEDLDANWEVLAEPIQTVMRR-YGIENPYEKLKELTRGKRITAEALREFIDGLDLPEEA- 432 (456)
T ss_pred HHHHHHHHHHccCEECHHHHHHHHHhcCcchHHHHHHHHHH-hChHhHHHHHHHHHHHHHhccCCHHHHHHHhcCCHhH-
Confidence 99999999999999999999999976665667777766666 999999999999999999999999988 5544321
Q ss_pred ccCCHHHHhhcCChhHhhhcccCCCCCcHHHHHHH
Q psy15027 262 HEDIGEDIFEILSVEKSVEHKDHVGATAPSQVQHS 296 (314)
Q Consensus 262 ~~~~~~~l~~~ldp~~~v~~r~~~gG~a~~~v~~~ 296 (314)
.++| .++||+ .|.|.+++.++++
T Consensus 433 ----~~~l-~~~~p~-------~ylg~a~~~~~~~ 455 (456)
T PRK09285 433 ----KARL-KALTPA-------NYIGLAAELADEI 455 (456)
T ss_pred ----HHHH-HcCCHH-------HHHhhHHHHHHhh
Confidence 2779 999999 8889988887654
No 34
>cd01596 Aspartase_like aspartase (L-aspartate ammonia-lyase) and fumarase class II enzymes. This group contains aspartase (L-aspartate ammonia-lyase), fumarase class II enzymes, and related proteins. It is a member of the Lyase class I family. Members of this family for the most part catalyze similar beta-elimination reactions in which a C-N or C-O bond is cleaved with the release of fumarate as one of the products. These proteins are active as tetramers. The four active sites of the homotetrameric enzyme are each formed by residues from three different subunits. Aspartase catalyzes the reversible deamination of aspartic acid. Fumarase catalyzes the reversible hydration/dehydration of fumarate to L-malate during the Krebs cycle.
Probab=100.00 E-value=2e-38 Score=313.17 Aligned_cols=224 Identities=21% Similarity=0.245 Sum_probs=184.4
Q ss_pred ccCCCcccccccccCCC-CccccHHHHHHHcCCCC-CCCCcchhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---
Q psy15027 35 KSGGGSESGDENGGGGT-THPIDRYRTTELLHFDS-PSGNSLDSISDRDFIIEFLSHCSITIMHLSRISEEFIIFMN--- 109 (314)
Q Consensus 35 ~~~~~~~~G~~aA~~gt-~~~idr~~la~~LGf~~-~~~ns~d~~~~RD~~~e~~~~la~la~~L~kiA~Dl~l~ss--- 109 (314)
++||+- +||..++... +..+ ++++|++|||+. +..|++||+++||+++++++++++++++|+|||+|+++|+|
T Consensus 221 plGg~A-~Gt~~~~~~~~~~~v-~~~~a~~LGl~~~~~~n~~d~~~~rd~~~e~~~~la~~~~~l~ria~Dl~~~ss~~~ 298 (450)
T cd01596 221 NLGGTA-VGTGLNAPPGYAEKV-AAELAELTGLPFVTAPNLFEATAAHDALVEVSGALKTLAVSLSKIANDLRLLSSGPR 298 (450)
T ss_pred CCCCcc-eeCCCCCChhHHHHH-HHHHHHHhCCCCccCcCHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCc
Confidence 445532 2554444322 1233 346899999995 77899999999999999999999999999999999999995
Q ss_pred CCCceeeccCCCCCCCCCCCCCCChhHHHHHHHHHhhhhhhHHHHHHHHhcCcccccchhhhcchhHHHHHHHHHHHHHH
Q psy15027 110 PQFDYVSLPDSLLTGSSIMPQKKNPDILELIRGKTGRVYGNLFNMLTIMKSQPLAYNKDMQECKQPLVDSIETLNMCLTA 189 (314)
Q Consensus 110 ~e~gei~lp~~~~~GSSiMPqKrNP~~~E~ir~~a~~v~g~~~~~l~~~~~~~~~~~rDl~~~~~~L~~~~~~~~~~l~~ 189 (314)
+|||||.+|+ +++|||+|||||||+.+|+|+++++++.|.+..++....+.|++++.+.......++..+..+..++..
T Consensus 299 ~e~gev~~~~-~~~GSS~MPqKrNP~~~E~ir~~a~~~~g~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~ 377 (450)
T cd01596 299 AGLGEINLPA-NQPGSSIMPGKVNPVIPEAVNMVAAQVIGNDTAITMAGSAGQLELNVFKPVIAYNLLQSIRLLANACRS 377 (450)
T ss_pred CCCeeEECCC-CCCCCCCCCCCCCCHHHHHHHHHHHHHhccHHHHHHHhhcCcccccchhhHHHHHHHHHHHHHHHHHHH
Confidence 4799999998 899999999999999999999999999999999998877877776555443334567777777777777
Q ss_pred HH-hchhcceechhhhHHhhccchhHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCChhHhhHHHHHhcccCCHHH
Q psy15027 190 FK-LILDNVKFNTGRMYVSAGEGFSIATDIADYLAKKKIPFRSCHEIVGKIIKFCVQEAKPLDQLSLEELKAIHEDIGED 268 (314)
Q Consensus 190 ~~-~~l~~l~vn~erm~~~l~~~~~~at~la~~L~~~Gi~~r~Ah~~v~~~v~~a~~~g~~l~e~~~~~~~~~~~~~~~~ 268 (314)
+. .+|++|+||+++|++++..++.+++++++.| +|+.++++++.+.++|+++.++..++ ..+.+++
T Consensus 378 ~~~~~l~~l~v~~~rm~~~l~~~~~~~t~LA~~l---------g~~~a~~~v~~a~~~g~~l~~~~~~~----~~~~~~~ 444 (450)
T cd01596 378 FRDKCVEGIEANEERCKEYVENSLMLVTALNPHI---------GYEKAAEIAKEALKEGRTLREAALEL----GLLTEEE 444 (450)
T ss_pred HHHHHHccCEECHHHHHHHHHhCcchHHHHhHHH---------hHHHHHHHHHHHHHcCCCHHHHHHHh----CCCCHHH
Confidence 66 9999999999999999999999999999997 66666668888899999999988765 4456777
Q ss_pred HhhcCC
Q psy15027 269 IFEILS 274 (314)
Q Consensus 269 l~~~ld 274 (314)
+++++|
T Consensus 445 l~~~~d 450 (450)
T cd01596 445 LDEILD 450 (450)
T ss_pred HHHHhC
Confidence 887765
No 35
>TIGR00839 aspA aspartate ammonia-lyase. Fumarate hydratase scores as high as 570 bits against this model.
Probab=100.00 E-value=3.5e-38 Score=312.42 Aligned_cols=208 Identities=22% Similarity=0.267 Sum_probs=180.1
Q ss_pred HHHHHHcCCCCC-CCCcchhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC---CCceeeccCCCCCCCCCCCCCCC
Q psy15027 58 YRTTELLHFDSP-SGNSLDSISDRDFIIEFLSHCSITIMHLSRISEEFIIFMNP---QFDYVSLPDSLLTGSSIMPQKKN 133 (314)
Q Consensus 58 ~~la~~LGf~~~-~~ns~d~~~~RD~~~e~~~~la~la~~L~kiA~Dl~l~ss~---e~gei~lp~~~~~GSSiMPqKrN 133 (314)
+++|++|||+.+ ..|++|++++||+++|+++++++++++|+|||+|+++|+|. |||||.+| .+++||||||||||
T Consensus 246 ~~~a~~LGl~~~~~~n~~da~~~rd~~~e~~~~l~~la~~L~ria~Dl~l~~s~~~~~~~ev~~~-~~~~gSS~MPqKrN 324 (468)
T TIGR00839 246 KKLAEVTGLPCVPAENLIEATSDCGAYVMVHGALKRLAVKMSKICNDLRLLSSGPRAGLNEINLP-ELQAGSSIMPAKVN 324 (468)
T ss_pred HHHHHHhCCCCCCCccHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCCceEEeCC-CCCCCCCCCCCCcC
Confidence 456999999985 57999999999999999999999999999999999999965 58999999 48999999999999
Q ss_pred hhHHHHHHHHHhhhhhhHHHHHHHHhcCcccccchhhh-cchhHHHHHHHHHHHHHH-HHhchhcceechhhhHHhhccc
Q psy15027 134 PDILELIRGKTGRVYGNLFNMLTIMKSQPLAYNKDMQE-CKQPLVDSIETLNMCLTA-FKLILDNVKFNTGRMYVSAGEG 211 (314)
Q Consensus 134 P~~~E~ir~~a~~v~g~~~~~l~~~~~~~~~~~rDl~~-~~~~L~~~~~~~~~~l~~-~~~~l~~l~vn~erm~~~l~~~ 211 (314)
|+.+|.++++++++.|....++.++++.+++++. .+. ..+.+++++..+..++.. +..++++|+||++||++++..+
T Consensus 325 P~~~E~ir~~a~~~~g~~~~~~~~~~~~~~~~~~-~e~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~vn~erm~~~l~~~ 403 (468)
T TIGR00839 325 PVVPEVVNQVCFKVIGNDTTVTLAAEAGQLQLNV-MEPVIGQAMFESIHILTNACYNLTDKCVNGITANKEICEGYVFNS 403 (468)
T ss_pred cHHHHHHHHHHHHHHhHHHHHHHHHhcCChHhhh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHccCEECHHHHHHHHHHh
Confidence 9999999999999999999998888887776543 221 245678888888888875 7899999999999999999988
Q ss_pred hhHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCChhHhhHHHHHhcccCCHHHHhhcCChhHhhh
Q psy15027 212 FSIATDIADYLAKKKIPFRSCHEIVGKIIKFCVQEAKPLDQLSLEELKAIHEDIGEDIFEILSVEKSVE 280 (314)
Q Consensus 212 ~~~at~la~~L~~~Gi~~r~Ah~~v~~~v~~a~~~g~~l~e~~~~~~~~~~~~~~~~l~~~ldp~~~v~ 280 (314)
+.++++|+ || .+|++++++++.+.++|+++.++..++ ..+.+++++.++||+++++
T Consensus 404 ~~~~~~La--------~~-~g~~~a~~~~~~a~~~g~~l~e~~~~~----~~l~~~~l~~~ldP~~~v~ 459 (468)
T TIGR00839 404 IGIVTYLN--------PF-IGHHNGDIVGKICAETGKSVREVVLEK----GLLTEEELDDIFSVENLMH 459 (468)
T ss_pred HHHHHHHh--------hH-hhHHHHHHHHHHHHHhCCCHHHHHHhc----CCCCHHHHHHHcCHHHHcC
Confidence 87776664 44 389999999999999999999988765 4567888999999997763
No 36
>PRK14515 aspartate ammonia-lyase; Provisional
Probab=100.00 E-value=4.1e-38 Score=312.30 Aligned_cols=216 Identities=21% Similarity=0.248 Sum_probs=184.6
Q ss_pred CCCccccHHHHHHH-------cCCCC-CCCCcchhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC---CCceeecc
Q psy15027 50 GTTHPIDRYRTTEL-------LHFDS-PSGNSLDSISDRDFIIEFLSHCSITIMHLSRISEEFIIFMNP---QFDYVSLP 118 (314)
Q Consensus 50 gt~~~idr~~la~~-------LGf~~-~~~ns~d~~~~RD~~~e~~~~la~la~~L~kiA~Dl~l~ss~---e~gei~lp 118 (314)
||++++||++.++. +|+.. +..|++|++++||++++++++|++++.+|+|||+||++|+|. +|+|+.+|
T Consensus 239 GT~~~~~~~~~~~~l~~la~~~gl~~~~~~n~~da~~~rd~~~e~~~~l~~la~~L~kiA~Dl~llsS~p~~g~~Ei~lp 318 (479)
T PRK14515 239 GTGLNADPEYIEAVVKHLAAISELPLVGAEDLVDATQNTDAYTEVSAALKVCMMNMSKIANDLRLMASGPRVGLAEIMLP 318 (479)
T ss_pred cCCCCCChhHHHHHHHHHHHHhCCCCCCCcchHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCeeEEeCC
Confidence 67778887655554 55553 345899999999999999999999999999999999999965 56668899
Q ss_pred CCCCCCCCCCCCCCChhHHHHHHHHHhhhhhhHHHHHHHHhcCcccccchh-hhcchhHHHHHHHHHHHHHHHH-hchhc
Q psy15027 119 DSLLTGSSIMPQKKNPDILELIRGKTGRVYGNLFNMLTIMKSQPLAYNKDM-QECKQPLVDSIETLNMCLTAFK-LILDN 196 (314)
Q Consensus 119 ~~~~~GSSiMPqKrNP~~~E~ir~~a~~v~g~~~~~l~~~~~~~~~~~rDl-~~~~~~L~~~~~~~~~~l~~~~-~~l~~ 196 (314)
+ .++|||||||||||+.+|+++++|+++.|+...++.+..+.+++++. + ......+++++..+..++..+. .|+++
T Consensus 319 ~-~~~GSSiMP~KrNP~~~E~i~~~a~~v~G~~~~~~~~~~~~~le~n~-~~p~i~~~l~~si~~l~~al~~~~~~~l~g 396 (479)
T PRK14515 319 A-RQPGSSIMPGKVNPVMPEVINQIAFQVIGNDHTICLASEAGQLELNV-MEPVLVFNLLQSISIMNNGFRAFTDNCLKG 396 (479)
T ss_pred C-CCCCcCCCCcccCchHHHHHHHHHHHHHhHHHHHHHHHhcccHHHHH-hcchhHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 8 69999999999999999999999999999999999888776666554 2 2224478889999999998777 59999
Q ss_pred ceechhhhHHhhccchhHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCChhHhhHHHHHhcccCCHHHHhhcCChh
Q psy15027 197 VKFNTGRMYVSAGEGFSIATDIADYLAKKKIPFRSCHEIVGKIIKFCVQEAKPLDQLSLEELKAIHEDIGEDIFEILSVE 276 (314)
Q Consensus 197 l~vn~erm~~~l~~~~~~at~la~~L~~~Gi~~r~Ah~~v~~~v~~a~~~g~~l~e~~~~~~~~~~~~~~~~l~~~ldp~ 276 (314)
|+||++||++++..++.++++|++.+ +|+.|++++++|.++|+++++++.++ ..++++++++++||+
T Consensus 397 l~vn~erm~~~l~~s~~l~t~La~~i---------G~~~v~~~a~~A~~~g~~l~e~~~~~----~~l~~~el~~~ldP~ 463 (479)
T PRK14515 397 IEANEDRLKEYVEKSVGIITAVNPHI---------GYEAAARVAKEAIATGQSVRELCVKN----GVLSQEDLELILDPF 463 (479)
T ss_pred CEECHHHHHHHHHhCccHHHHhcchh---------cHHHHHHHHHHHHHhCCCHHHHHHhc----CCCCHHHHHHhCCHH
Confidence 99999999999999999999998865 48889999999999999999987654 456788999999999
Q ss_pred Hhhh
Q psy15027 277 KSVE 280 (314)
Q Consensus 277 ~~v~ 280 (314)
+++.
T Consensus 464 ~~~~ 467 (479)
T PRK14515 464 EMTH 467 (479)
T ss_pred HcCC
Confidence 9874
No 37
>cd01598 PurB PurB_like adenylosuccinases (adenylsuccinate lyase, ASL). This subgroup contains EcASL, the product of the purB gene in Escherichia coli, and related proteins. It is a member of the Lyase class I family of the Lyase_I superfamily. Members of the Lyase class I family function as homotetramers to catalyze similar beta-elimination reactions in which a Calpha-N or Calpha-O bond is cleaved with the subsequent release of fumarate as one of the products. The four active sites of the homotetrameric enzyme are each formed by residues from three different subunits. ASL catalyzes two non-sequential steps in the de novo purine biosynthesis pathway: the conversion of 5-aminoimidazole-(N-succinylocarboxamide) ribotide (SAICAR) into 5-aminoimidazole-4-carboxamide ribotide (AICAR) and; the conversion of adenylsuccinate (SAMP) into adenosine monophosphate (AMP).
Probab=100.00 E-value=8.2e-36 Score=292.19 Aligned_cols=192 Identities=14% Similarity=0.150 Sum_probs=163.9
Q ss_pred ccccccccC----CC-CccccHHHHHHHcCCCCCCCCcchh-hhchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCce
Q psy15027 41 ESGDENGGG----GT-THPIDRYRTTELLHFDSPSGNSLDS-ISDRDFIIEFLSHCSITIMHLSRISEEFIIFMNPQFDY 114 (314)
Q Consensus 41 ~~G~~aA~~----gt-~~~idr~~la~~LGf~~~~~ns~d~-~~~RD~~~e~~~~la~la~~L~kiA~Dl~l~ss~e~ge 114 (314)
.+||+++.. +. ...+ ++.+++.|||..+. ..| +++||+++|+++++++++++|+|||+|+++|+++ ||
T Consensus 188 avGt~~~~~~~~~~~~~~~~-~~~~a~~LgL~~~~---~~~~v~~rD~~~e~~~~La~la~~L~kia~Di~ll~s~--ge 261 (425)
T cd01598 188 AVGNFNAHLVAYPDVDWRKF-SEFFVTSLGLTWNP---YTTQIEPHDYIAELFDALARINTILIDLCRDIWGYISL--GY 261 (425)
T ss_pred chhhhhhhhhccCcccHHHH-HHHHHHHhCcCCCC---cccchhccHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC--cc
Confidence 678877763 22 2345 55999999998754 337 6999999999999999999999999999999998 55
Q ss_pred eeccC-CCCCCCCCCCCCCChhHHHHHHHHHhhhhhhHHHHHHHHhcCcccccchhhhc--chhHHHHHHHHHHHHHHHH
Q psy15027 115 VSLPD-SLLTGSSIMPQKKNPDILELIRGKTGRVYGNLFNMLTIMKSQPLAYNKDMQEC--KQPLVDSIETLNMCLTAFK 191 (314)
Q Consensus 115 i~lp~-~~~~GSSiMPqKrNP~~~E~ir~~a~~v~g~~~~~l~~~~~~~~~~~rDl~~~--~~~L~~~~~~~~~~l~~~~ 191 (314)
+.++. +.++|||+|||||||+.+|+++++++.+.+....++..+ .+++|+||++.+ +..+++++..+..++..+.
T Consensus 262 ~~e~~~~~~~GSS~MPhKrNPv~~E~i~~~a~~a~~~~~~~~~~~--~~~~~eRD~~~~~~e~~~~~~~~~~~~al~~~~ 339 (425)
T cd01598 262 FKQKVKKGEVGSSTMPHKVNPIDFENAEGNLGLSNALLNHLSAKL--PISRLQRDLTDSTVLRNIGVAFGHSLIAYKSLL 339 (425)
T ss_pred eeecCCCCCCCcCCCCCCcCchHHHHHHHHHHHHHHHHHHHHhhh--hhhhhcccccchhhhccHHHHHHHHHHHHHHHH
Confidence 65544 579999999999999999999999999999998877654 156899999865 3455999999999999999
Q ss_pred hchhcceechhhhHHhhccchhHHHHHHHHHHHcCCChHHHHHHHHHHHH
Q psy15027 192 LILDNVKFNTGRMYVSAGEGFSIATDIADYLAKKKIPFRSCHEIVGKIIK 241 (314)
Q Consensus 192 ~~l~~l~vn~erm~~~l~~~~~~at~la~~L~~~Gi~~r~Ah~~v~~~v~ 241 (314)
.++++|+||++||++|+..++.+.++.++.+++. +++++||++|+++++
T Consensus 340 ~ll~~L~v~~~rm~~nl~~~~~i~sE~~~~~l~~-~gr~~Ah~~V~~~~~ 388 (425)
T cd01598 340 RGLDKLELNEARLLEDLDANWEVLAEPIQTVMRR-YGIPNPYEKLKDLTR 388 (425)
T ss_pred HHHccCEECHHHHHHHHHhCcCHHHHHHHHHHHh-cChHhHHHHHHHHhC
Confidence 9999999999999999977666788888888776 999999999999885
No 38
>PLN02848 adenylosuccinate lyase
Probab=100.00 E-value=2.9e-35 Score=290.70 Aligned_cols=234 Identities=13% Similarity=0.128 Sum_probs=176.4
Q ss_pred ccccccccCCCCcc-ccH----HHHHHHcCCCCCCCCcchhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcee
Q psy15027 41 ESGDENGGGGTTHP-IDR----YRTTELLHFDSPSGNSLDSISDRDFIIEFLSHCSITIMHLSRISEEFIIFMNPQFDYV 115 (314)
Q Consensus 41 ~~G~~aA~~gt~~~-idr----~~la~~LGf~~~~~ns~d~~~~RD~~~e~~~~la~la~~L~kiA~Dl~l~ss~e~gei 115 (314)
.+||++++.. +|+ +|+ +.+++.|||... +..+++.+||+++|+++++++++++|+|||+|++.|+ |+||+
T Consensus 213 AvGt~aa~~~-~~~~~d~~~v~~~la~~LGL~~~--~~~~~v~~rD~~~e~~~~La~~a~~l~kia~Di~~~~--e~ge~ 287 (458)
T PLN02848 213 AVGNYNAHMS-AYPEVDWPAVAEEFVTSLGLTFN--PYVTQIEPHDYMAELFNAVSRFNNILIDFDRDIWSYI--SLGYF 287 (458)
T ss_pred ccchhhhhhh-ccCCCCHHHHHHHHHHHhCCCCC--CchhhHhccHHHHHHHHHHHHHHHHHHHHHHHHHhhh--hcCCc
Confidence 4788888632 222 333 356667999741 1222469999999999999999999999999988776 78888
Q ss_pred eccC-CCCCCCCCCCCCCChhHHHHHHHHHhhhhhhHHHHHHHHhc-Ccccccchhhhc--chhHHHHHHHHHHHHHHHH
Q psy15027 116 SLPD-SLLTGSSIMPQKKNPDILELIRGKTGRVYGNLFNMLTIMKS-QPLAYNKDMQEC--KQPLVDSIETLNMCLTAFK 191 (314)
Q Consensus 116 ~lp~-~~~~GSSiMPqKrNP~~~E~ir~~a~~v~g~~~~~l~~~~~-~~~~~~rDl~~~--~~~L~~~~~~~~~~l~~~~ 191 (314)
.++. ..++|||||||||||+.+|+++++++.+.|.+..++. + ..++|+||++.+ ...+++++.++..++..+.
T Consensus 288 ~e~~~~~~~GSS~MP~KrNPv~~E~i~~~a~~~~~~~~~~~~---~~~~~~~eRD~~~s~~e~~~~~~~~~~~~al~~~~ 364 (458)
T PLN02848 288 KQITKAGEVGSSTMPHKVNPIDFENSEGNLGLANAELSHLSM---KLPISRMQRDLTDSTVLRNMGVGLGHSLLAYKSTL 364 (458)
T ss_pred ccccCCCCCCcCCCCCCcCcHHHHHHHHHHHHHHHHHHHHHh---cCcchhhccccchhhhhccHHHHHHHHHHHHHHHH
Confidence 8765 4699999999999999999999999999999999874 5 445699999765 3355999999999999999
Q ss_pred hchhcceechhhhHHhhccchhHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCChhHhhHHHHHhcccCCH--HHH
Q psy15027 192 LILDNVKFNTGRMYVSAGEGFSIATDIADYLAKKKIPFRSCHEIVGKIIKFCVQEAKPLDQLSLEELKAIHEDIG--EDI 269 (314)
Q Consensus 192 ~~l~~l~vn~erm~~~l~~~~~~at~la~~L~~~Gi~~r~Ah~~v~~~v~~a~~~g~~l~e~~~~~~~~~~~~~~--~~l 269 (314)
.+|++|+||++||++|+..++.+.++.++.++++ +++.+||++|+++++.-.-....+.++.. . ..+.+ ++.
T Consensus 365 ~~l~~L~v~~~rm~~nl~~~~~~~sE~~~~~l~~-~G~~~A~e~v~~~~~~~~~~~~~~~~~~~-~----~~~~~~~~~~ 438 (458)
T PLN02848 365 RGIGKLQVNEARLAEDLDQTWEVLAEPIQTVMRR-YGVPEPYEKLKELTRGRAVTKESMREFIE-G----LELPEEAKDQ 438 (458)
T ss_pred HHHccCEECHHHHHHHHHccchhHHHHHHHHHHH-hChHHHHHHHHHHHHHccCCHHHHHHHHH-H----cCCCHHHHHH
Confidence 9999999999999999977665455555555555 88999999999998642111111222211 1 11232 233
Q ss_pred hhcCChhHhhhcccCCCCCcHHHHHH
Q psy15027 270 FEILSVEKSVEHKDHVGATAPSQVQH 295 (314)
Q Consensus 270 ~~~ldp~~~v~~r~~~gG~a~~~v~~ 295 (314)
-..|.|. +|.|.+++.+++
T Consensus 439 l~~~~~~-------~y~g~~~~~~~~ 457 (458)
T PLN02848 439 LLKLTPH-------TYIGAAAALALN 457 (458)
T ss_pred HHhCCch-------hhhchHHHHHhh
Confidence 3456788 999999887763
No 39
>cd01334 Lyase_I Lyase class I family; a group of proteins which catalyze similar beta-elimination reactions. The Lyase class I family contains class II fumarase, aspartase, adenylosuccinate lyase (ASL), argininosuccinate lyase (ASAL), prokaryotic-type 3-carboxy-cis,cis-muconate cycloisomerase (pCMLE), and related proteins. It belongs to the Lyase_I superfamily. Proteins of this family for the most part catalyze similar beta-elimination reactions in which a C-N or C-O bond is cleaved with the release of fumarate as one of the products. These proteins are active as tetramers. The four active sites of the homotetrameric enzyme are each formed by residues from three different subunits.
Probab=100.00 E-value=8.9e-35 Score=276.94 Aligned_cols=154 Identities=42% Similarity=0.641 Sum_probs=145.9
Q ss_pred ccCCCCc--cccHHHHHHHcCCCCCCCCcchhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceeeccCCCCCC
Q psy15027 47 GGGGTTH--PIDRYRTTELLHFDSPSGNSLDSISDRDFIIEFLSHCSITIMHLSRISEEFIIFMNPQFDYVSLPDSLLTG 124 (314)
Q Consensus 47 A~~gt~~--~idr~~la~~LGf~~~~~ns~d~~~~RD~~~e~~~~la~la~~L~kiA~Dl~l~ss~e~gei~lp~~~~~G 124 (314)
|++++++ +++|+++|+.|||..+..|+++++++||+++|++++++.++++|+|||+|+++|+++||||+.+|+.+++|
T Consensus 170 A~g~~~~~~~~~~~~~a~~LG~~~~~~~~~~a~~~rd~~~e~~~~l~~~~~~l~ria~Dl~~~~~~e~gev~~~~~~~~g 249 (325)
T cd01334 170 AVGTGANAPPIDRERVAELLGFFGPAPNSTQAVSDRDFLVELLSALALLAVSLSKIANDLRLLSSGEFGEVELPDAKQPG 249 (325)
T ss_pred HHhCcCCCCcchHHHHHHHhcCcCcCcCHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCeEECCCCCCCC
Confidence 3334444 89999999999998889999888999999999999999999999999999999999999999999988999
Q ss_pred CCCCCCCCChhHHHHHHHHHhhhhhhHHHHHHHHhcCcccccchhhhcchhHHHHHHHHHHHHHHHHhchhcceec
Q psy15027 125 SSIMPQKKNPDILELIRGKTGRVYGNLFNMLTIMKSQPLAYNKDMQECKQPLVDSIETLNMCLTAFKLILDNVKFN 200 (314)
Q Consensus 125 SSiMPqKrNP~~~E~ir~~a~~v~g~~~~~l~~~~~~~~~~~rDl~~~~~~L~~~~~~~~~~l~~~~~~l~~l~vn 200 (314)
||||||||||+.+|+++++++++.|....++.++.+.+.++++|.+..|..+++++..+..++..+..++++|+||
T Consensus 250 SS~MP~KrNP~~~E~i~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~l~v~ 325 (325)
T cd01334 250 SSIMPQKVNPVILELVRGLAGRVIGNLAALLEALKGGPLEDNVDSPVEREALPDSFDLLDAALRLLTGVLEGLEVN 325 (325)
T ss_pred cccCCCCCCCHHHHHHHHHHHHHhhHHHHHHHHHhcCchhhhcccHHHHHHHHHHHHHHHHHHHHHHHHhCcCEeC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999997
No 40
>TIGR02426 protocat_pcaB 3-carboxy-cis,cis-muconate cycloisomerase. Members of this family are 3-carboxy-cis,cis-muconate cycloisomerase, the enzyme the catalyzes the second step in the protocatechuate degradation to beta-ketoadipate and then to succinyl-CoA and acetyl-CoA. 4-hydroxybenzoate, 3-hydroxybenzoate, and vanillate all can be converted in one step to protocatechuate. All members of the seed alignment for this model were chosen from within protocatechuate degradation operons of at least three genes of the pathway, from genomes with the complete pathway through beta-ketoadipate.
Probab=99.97 E-value=1.2e-31 Score=256.73 Aligned_cols=154 Identities=19% Similarity=0.194 Sum_probs=138.2
Q ss_pred ccccCCCcccccccccCCCCccccHHHHHHHcCCCCCCCCcchhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q psy15027 33 EGKSGGGSESGDENGGGGTTHPIDRYRTTELLHFDSPSGNSLDSISDRDFIIEFLSHCSITIMHLSRISEEFIIFMNPQF 112 (314)
Q Consensus 33 ~~~~~~~~~~G~~aA~~gt~~~idr~~la~~LGf~~~~~ns~d~~~~RD~~~e~~~~la~la~~L~kiA~Dl~l~ss~e~ 112 (314)
..++|| .+||.+++.+.+++| |++++++|||+.+..| |+++||+++|+++++++++++|+|||+|+++|+++||
T Consensus 182 ~~~lGg--avGtg~~~~~~~~~v-~~~~a~~LGl~~~~~~---~~~~rd~~~e~~~~l~~la~~l~ria~Dl~l~s~~e~ 255 (338)
T TIGR02426 182 PLQFGG--AAGTLAALGTRGGAV-AAALAARLGLPLPALP---WHTQRDRIAEFGSALALVAGALGKIAGDIALLSQTEV 255 (338)
T ss_pred hcCCcc--hhccCCCccchHHHH-HHHHHHHhCcCCCCCc---chhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 456677 577777777777899 8899999999987655 8999999999999999999999999999999999999
Q ss_pred ceeeccCCCCCCCCCCCCCCChhHHHHHHHHHhhhhhhHHHHHHHHhcCcccccchhhh---cchhHHHHHHHHHHHHHH
Q psy15027 113 DYVSLPDSLLTGSSIMPQKKNPDILELIRGKTGRVYGNLFNMLTIMKSQPLAYNKDMQE---CKQPLVDSIETLNMCLTA 189 (314)
Q Consensus 113 gei~lp~~~~~GSSiMPqKrNP~~~E~ir~~a~~v~g~~~~~l~~~~~~~~~~~rDl~~---~~~~L~~~~~~~~~~l~~ 189 (314)
||+.++ +++|||||||||||+.+|+++++++++.|+...++.+ .+.+||||... .|..||+++.++..+|..
T Consensus 256 gei~~~--~~~GSSiMPqK~NP~~~E~i~~~a~~~~g~~~~~~~~---~~~~~Er~~~~~~~e~~~lp~~~~~~~~~l~~ 330 (338)
T TIGR02426 256 GEVFEA--GGGGSSAMPHKRNPVGAALLAAAARRVPGLAATLHAA---LPQEHERSLGGWHAEWETLPELVRLTGGALRQ 330 (338)
T ss_pred ChhhhC--CCCCcccCCCCCCcHHHHHHHHHHHHHHHHHHHHHHh---chHhhccCCCchHHHHHHHHHHHHHHHHHHHH
Confidence 999883 4799999999999999999999999999999998775 56799999764 567999999999999999
Q ss_pred HHhchhcc
Q psy15027 190 FKLILDNV 197 (314)
Q Consensus 190 ~~~~l~~l 197 (314)
+..++++|
T Consensus 331 ~~~~l~~l 338 (338)
T TIGR02426 331 AQVLAEGL 338 (338)
T ss_pred HHHHHhcC
Confidence 99999875
No 41
>PRK05975 3-carboxy-cis,cis-muconate cycloisomerase; Provisional
Probab=99.97 E-value=8.2e-31 Score=251.83 Aligned_cols=155 Identities=20% Similarity=0.196 Sum_probs=138.8
Q ss_pred cccccCCCcccccccccCCCCccccHHHHHHHcCCCCCCCCcchhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q psy15027 32 SEGKSGGGSESGDENGGGGTTHPIDRYRTTELLHFDSPSGNSLDSISDRDFIIEFLSHCSITIMHLSRISEEFIIFMNPQ 111 (314)
Q Consensus 32 ~~~~~~~~~~~G~~aA~~gt~~~idr~~la~~LGf~~~~~ns~d~~~~RD~~~e~~~~la~la~~L~kiA~Dl~l~ss~e 111 (314)
...++|| .+||++++++ .++.+++++|++|||..+. +|+++||+++++++++++++++|+|||+|+++|+++|
T Consensus 190 ~~~~lGG--AvGt~~~~~~-~~~~~~~~~a~~LGl~~~~----~~~~~rD~~~e~~~~la~la~~l~kiA~Di~ll~s~e 262 (351)
T PRK05975 190 FPLQFGG--AAGTLEKLGG-KAAAVRARLAKRLGLEDAP----QWHSQRDFIADFAHLLSLVTGSLGKFGQDIALMAQAG 262 (351)
T ss_pred hhcCCcc--HhccCccCCC-cHHHHHHHHHHHhCcCCCc----chhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 3467787 5899888644 4678899999999997542 4899999999999999999999999999999999999
Q ss_pred CceeeccCCCCCCCCCCCCCCChhHHHHHHHHHhhhhhhHHHHHHHHhcCcccccchhh---hcchhHHHHHHHHHHHHH
Q psy15027 112 FDYVSLPDSLLTGSSIMPQKKNPDILELIRGKTGRVYGNLFNMLTIMKSQPLAYNKDMQ---ECKQPLVDSIETLNMCLT 188 (314)
Q Consensus 112 ~gei~lp~~~~~GSSiMPqKrNP~~~E~ir~~a~~v~g~~~~~l~~~~~~~~~~~rDl~---~~~~~L~~~~~~~~~~l~ 188 (314)
||+.+|+ ++|||||||||||+.+|+++++++.+.+++..++. +++.+||||.. .+|..||+++.++..++.
T Consensus 263 -gev~~~~--~~GSS~MPhKrNPv~~E~i~~~ar~~~~~~~~~~~---~~~~~~er~~~~~~~e~~~lp~~~~~~~~~l~ 336 (351)
T PRK05975 263 -DEISLSG--GGGSSAMPHKQNPVAAETLVTLARFNATQVSGLHQ---ALVHEQERSGAAWTLEWMILPQMVAATGAALR 336 (351)
T ss_pred -CcccCCC--CCccCCCCCCcCcHHHHHHHHHHHHHHHHHHHHHh---cccchhccCCchHHHHHHHHHHHHHHHHHHHH
Confidence 9999997 59999999999999999999999999999988776 45789999986 457799999999999999
Q ss_pred HHHhchhccee
Q psy15027 189 AFKLILDNVKF 199 (314)
Q Consensus 189 ~~~~~l~~l~v 199 (314)
.+..++++|++
T Consensus 337 ~~~~ll~~l~~ 347 (351)
T PRK05975 337 LALELAGNIRR 347 (351)
T ss_pred HHHHHHhhhHh
Confidence 99999999875
No 42
>COG0114 FumC Fumarase [Energy production and conversion]
Probab=99.97 E-value=1e-29 Score=239.99 Aligned_cols=205 Identities=20% Similarity=0.214 Sum_probs=186.1
Q ss_pred HHHHHHcCCCC-CCCCcchhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC---CceeeccCCCCCCCCCCCCCCC
Q psy15027 58 YRTTELLHFDS-PSGNSLDSISDRDFIIEFLSHCSITIMHLSRISEEFIIFMNPQ---FDYVSLPDSLLTGSSIMPQKKN 133 (314)
Q Consensus 58 ~~la~~LGf~~-~~~ns~d~~~~RD~~~e~~~~la~la~~L~kiA~Dl~l~ss~e---~gei~lp~~~~~GSSiMPqKrN 133 (314)
+.++++.|+.. +..|.|.+.+++|.+++++..|..++.+|.|||+|++++.|.+ +|||.+|+ -++||||||.|.|
T Consensus 247 ~~i~~~TG~~F~~a~NkF~al~~hd~lv~~~Gal~~lA~~L~KIAnDiR~l~SGPr~GLgEi~lPe-nePGSSIMPGKVN 325 (462)
T COG0114 247 EELAELTGLPFVTAPNKFEALAAHDALVEASGALRTLAVSLMKIANDIRWLGSGPRCGLGEIELPE-NEPGSSIMPGKVN 325 (462)
T ss_pred HHHHHHhCCCcccCCcHHHHHhcchHHHHHhHHHHHHHHHHHHHHHHHHHHhcCCCCCccccccCC-CCCCccCCCCCCC
Confidence 46888899986 6899999999999999999999999999999999999999985 99999995 6899999999999
Q ss_pred hhHHHHHHHHHhhhhhhHHHHHHHHhcCcccccchhhhcch----hHHHHHHHHHHHHHHHH-hchhcceechhhhHHhh
Q psy15027 134 PDILELIRGKTGRVYGNLFNMLTIMKSQPLAYNKDMQECKQ----PLVDSIETLNMCLTAFK-LILDNVKFNTGRMYVSA 208 (314)
Q Consensus 134 P~~~E~ir~~a~~v~g~~~~~l~~~~~~~~~~~rDl~~~~~----~L~~~~~~~~~~l~~~~-~~l~~l~vn~erm~~~l 208 (314)
|+.||.+...|.+|+|+...+..+... .+.++...++ ++.+...++.+++..|+ .|+.+|++|+++|++++
T Consensus 326 Ptq~EA~tmv~~QV~Gnd~ai~~ags~----GnFELNv~~Pvi~~N~LqS~~LLada~~~f~~~ci~gie~n~~~i~~~l 401 (462)
T COG0114 326 PTQCEALTMVAAQVIGNDAAIAFAGSQ----GNFELNVFKPVIAYNFLQSVRLLADAMRSFADHCIVGIEPNEERIKELL 401 (462)
T ss_pred chhHHHHHHHHHHHHcchHHHHHhhcc----CceeeccccHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCHHHHHHHH
Confidence 999999999999999999999887654 4555666665 68999999999999998 89999999999999999
Q ss_pred ccchhHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCChhHhhHHHHHhcccCCHHHHhhcCChhHhhh
Q psy15027 209 GEGFSIATDIADYLAKKKIPFRSCHEIVGKIIKFCVQEAKPLDQLSLEELKAIHEDIGEDIFEILSVEKSVE 280 (314)
Q Consensus 209 ~~~~~~at~la~~L~~~Gi~~r~Ah~~v~~~v~~a~~~g~~l~e~~~~~~~~~~~~~~~~l~~~ldp~~~v~ 280 (314)
+++.++.|.|...+ +|+...++++.|.++|++++|...+. ..++++++++++||+.++.
T Consensus 402 ~~SlmLVTaLnp~I---------GYdkAa~IAK~A~keg~tlreaa~~~----G~lte~efd~~v~Pe~mv~ 460 (462)
T COG0114 402 ERSLMLVTALNPHI---------GYDKAAKIAKKAHKEGTTLREAALEL----GLLSEEEFDKLVDPEKMVG 460 (462)
T ss_pred hhCchHHHhccccc---------chHHHHHHHHHHHHCCCcHHHHHHHc----CCCCHHHHHHhcCHHHhcC
Confidence 99999999999888 89999999999999999999887643 6778999999999998763
No 43
>COG1027 AspA Aspartate ammonia-lyase [Amino acid transport and metabolism]
Probab=99.97 E-value=8.6e-30 Score=239.97 Aligned_cols=208 Identities=22% Similarity=0.270 Sum_probs=186.7
Q ss_pred HHHHHHcCCCC-CCCCcchhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC---CceeeccCCCCCCCCCCCCCCC
Q psy15027 58 YRTTELLHFDS-PSGNSLDSISDRDFIIEFLSHCSITIMHLSRISEEFIIFMNPQ---FDYVSLPDSLLTGSSIMPQKKN 133 (314)
Q Consensus 58 ~~la~~LGf~~-~~~ns~d~~~~RD~~~e~~~~la~la~~L~kiA~Dl~l~ss~e---~gei~lp~~~~~GSSiMPqKrN 133 (314)
+.+++..||+. +..|.++++.+.|.+++++.++..++..|+|||+|++|++|.+ ++||.+|. .|.||||||.|.|
T Consensus 249 ~~l~evtg~~~~~A~~Lieatq~~~afv~vsg~lk~~Av~LsKI~NDlRLLsSGPr~Gl~EI~LP~-~Q~GSSIMPgKVN 327 (471)
T COG1027 249 KKLAEVTGLPLVPAENLIEATQDTGAFVMVSGALKRLAVKLSKICNDLRLLSSGPRAGLNEINLPA-VQAGSSIMPGKVN 327 (471)
T ss_pred HHHHHHhCCCCccchhHHHHHhcccHHHHHHHHHHHHHHHHHHHhhhhhhhccCCccCcccccCCC-CCCCCCCCCCCcC
Confidence 47999999994 8899999999999999999999999999999999999999985 99999995 8999999999999
Q ss_pred hhHHHHHHHHHhhhhhhHHHHHHHHhcCcccccchhhhcchhHHHHHHHHHHHHHHHH-hchhcceechhhhHHhhccch
Q psy15027 134 PDILELIRGKTGRVYGNLFNMLTIMKSQPLAYNKDMQECKQPLVDSIETLNMCLTAFK-LILDNVKFNTGRMYVSAGEGF 212 (314)
Q Consensus 134 P~~~E~ir~~a~~v~g~~~~~l~~~~~~~~~~~rDl~~~~~~L~~~~~~~~~~l~~~~-~~l~~l~vn~erm~~~l~~~~ 212 (314)
||++|.+.+.|..|+|+...+..+....+++-|--....-..+++++..+.+++..++ +|+++|+.|+++|++++..+.
T Consensus 328 PVipEvvnQvcf~ViGnD~tit~AaeaGQLqLNvmePvI~~~l~~Si~iL~na~~~l~ekcI~gItaN~e~C~~~v~nSi 407 (471)
T COG1027 328 PVIPEVVNQVCFKVIGNDTTITMAAEAGQLQLNVMEPVIAYALFESISILTNACRNLREKCIDGITANEERCEEYVENSI 407 (471)
T ss_pred chhHHHHHHHHHHHhcchHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCHHHHHHHHHhhh
Confidence 9999999999999999999999988764433222222233478999999999999998 699999999999999999999
Q ss_pred hHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCChhHhhHHHHHhcccCCHHHHhhcCChhHhh
Q psy15027 213 SIATDIADYLAKKKIPFRSCHEIVGKIIKFCVQEAKPLDQLSLEELKAIHEDIGEDIFEILSVEKSV 279 (314)
Q Consensus 213 ~~at~la~~L~~~Gi~~r~Ah~~v~~~v~~a~~~g~~l~e~~~~~~~~~~~~~~~~l~~~ldp~~~v 279 (314)
.+.|.|-+++ +|+.+.++++.|.+.|++.+++.++. ..+.+++|.++|+|+.+.
T Consensus 408 givTaLnp~i---------Gy~~~~~iaK~a~~tgksv~evvLe~----g~Lteeel~~Il~~~~m~ 461 (471)
T COG1027 408 GIVTALNPYI---------GYENAAIIAKEALETGKSVREVVLER----GLLTEEELDDILSPENMT 461 (471)
T ss_pred HHHHhhcccc---------cchHHHHHHHHHHHcCCcHHHHHHHh----CCCCHHHHHHHhChhhcC
Confidence 9999998888 89999999999999999999998876 567899999999999764
No 44
>KOG2700|consensus
Probab=99.96 E-value=1.7e-28 Score=234.16 Aligned_cols=255 Identities=16% Similarity=0.081 Sum_probs=212.0
Q ss_pred cccccccccCCCCccccHH------HHHHHcCCCCCCCCcchhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc
Q psy15027 40 SESGDENGGGGTTHPIDRY------RTTELLHFDSPSGNSLDSISDRDFIIEFLSHCSITIMHLSRISEEFIIFMNPQFD 113 (314)
Q Consensus 40 ~~~G~~aA~~gt~~~idr~------~la~~LGf~~~~~ns~d~~~~RD~~~e~~~~la~la~~L~kiA~Dl~l~ss~e~g 113 (314)
+..||.+++-.-..+...+ .+++.+||..+..-+ .++++||...+..+.++++.++..|+|.|+++++. |.
T Consensus 197 ga~gtqasf~~l~~~~~~kv~~ld~Lv~k~~gf~~~~~~T-GQt~sr~~~~~~~~~la~lgat~~k~~Tdirll~~--~~ 273 (481)
T KOG2700|consen 197 GATGTQASFLSLFLGDMDKVEKLDSLVTKELGFVPMYIVT-GQTYSRKTDAEEVAPLASLGATAHKYATDIRLLAK--FA 273 (481)
T ss_pred cchhhHHHHHHhhcccHHHHHHHHHHHHHHhCCCcccccc-CCcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHH--HH
Confidence 4577777776544443222 788999999866554 57889999999999999999999999999999999 99
Q ss_pred eeeccCC-CCCCCCCCCCCCChhHHHHHHHHHhhhhhhHHHHHHHHhcCcccccchhhhcc---hhHHHHHHHHHHHHHH
Q psy15027 114 YVSLPDS-LLTGSSIMPQKKNPDILELIRGKTGRVYGNLFNMLTIMKSQPLAYNKDMQECK---QPLVDSIETLNMCLTA 189 (314)
Q Consensus 114 ei~lp~~-~~~GSSiMPqKrNP~~~E~ir~~a~~v~g~~~~~l~~~~~~~~~~~rDl~~~~---~~L~~~~~~~~~~l~~ 189 (314)
|+.+|++ .+.|||.||+||||+.||.|.++++.+...+..++.... ..+++|++.++. -.+|++|..+...|..
T Consensus 274 ev~epFea~q~gsSaMp~krNpm~~E~itslar~l~~~v~~al~~~~--~qw~Ertl~dSa~~rivlP~~Fl~ad~~L~~ 351 (481)
T KOG2700|consen 274 EVEEPFEAHQIGSSAMPYKRNPMRCERITSLARHLRPYVTQALNTAS--VQWHERTLDDSANRRIVLPDAFLTADGNLGT 351 (481)
T ss_pred HhhccccccccccccCCCCCCCchhHHHhHHHHHHHHHHHHHhhhHH--HHHhhcccccccccceechHHHHHHHHHHHH
Confidence 9999986 499999999999999999999999999999999886332 246778776543 4899999999999999
Q ss_pred HHhchhcceechhhhHHhh--ccchhHHHHHHHHHHHcCCChHHHHHHHHHHHHHH----HHcCCChhHhhHHHHHhccc
Q psy15027 190 FKLILDNVKFNTGRMYVSA--GEGFSIATDIADYLAKKKIPFRSCHEIVGKIIKFC----VQEAKPLDQLSLEELKAIHE 263 (314)
Q Consensus 190 ~~~~l~~l~vn~erm~~~l--~~~~~~at~la~~L~~~Gi~~r~Ah~~v~~~v~~a----~~~g~~l~e~~~~~~~~~~~ 263 (314)
...+++++.|.+++|.+++ +.+++..+.+.++|+++|.+|++||+.|+.+..++ .+++.++..+..........
T Consensus 352 ~~ni~~gl~v~p~~i~r~i~~e~~~~~~eni~mAL~~~g~srq~ahe~I~~L~~~a~~~v~~e~g~~~~ie~~k~~~~~~ 431 (481)
T KOG2700|consen 352 LLNILEGLVVYPKVIERNIRDELPFMVLENIIMALVKAGLSRQEAHEGIRKLSHQAAQVVKQEGGDNDLIERAKEDPTFK 431 (481)
T ss_pred HHHHHhhcccccHHHHHHHHhhhhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHhccccccc
Confidence 9999999999999999999 57899999999999999999999999999999888 77888765554433222233
Q ss_pred CCHHHHhhcCChhHhhhcccCCCCCcHHHHHHHHHH-HHHHHHH
Q psy15027 264 DIGEDIFEILSVEKSVEHKDHVGATAPSQVQHSVDV-FENFVKD 306 (314)
Q Consensus 264 ~~~~~l~~~ldp~~~v~~r~~~gG~a~~~v~~~i~~-~~~~l~~ 306 (314)
...+++..+|||. .|.|-+++++.+++.+ +...++.
T Consensus 432 ~v~ee~~~ll~p~-------~f~gra~dQie~~v~~~~~~a~a~ 468 (481)
T KOG2700|consen 432 PVKEELDSLLDPL-------NFTGRAVDQIEKFVPKEVVPALAA 468 (481)
T ss_pred chHHHHHhhccch-------hcccccHHHHHHHhhhhhhHHHHH
Confidence 4578999999999 7889999999998875 3333333
No 45
>PF00206 Lyase_1: Lyase; InterPro: IPR022761 This entry represents the N-terminal region of lyase-1 family; PDB: 1DOF_C 1K62_B 1AOS_B 2VD6_D 2J91_B 1C3U_B 1C3C_A 3R6Y_C 3R6V_F 3R6Q_F ....
Probab=99.92 E-value=1.7e-25 Score=212.19 Aligned_cols=100 Identities=40% Similarity=0.536 Sum_probs=92.0
Q ss_pred CCCccccHH---HHHHHcC-CCC---CCCCcchhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceeeccCCC-
Q psy15027 50 GTTHPIDRY---RTTELLH-FDS---PSGNSLDSISDRDFIIEFLSHCSITIMHLSRISEEFIIFMNPQFDYVSLPDSL- 121 (314)
Q Consensus 50 gt~~~idr~---~la~~LG-f~~---~~~ns~d~~~~RD~~~e~~~~la~la~~L~kiA~Dl~l~ss~e~gei~lp~~~- 121 (314)
|++++++++ ++++.|| |.. +..|+++|+++||+++++++++++++++|+|||+|+++|+++|+||+++|++.
T Consensus 205 gt~~~~~~~~~~~~~~~L~~~~~l~~~~~~~~~~~~~rd~~~e~~~~l~~l~~~l~kia~Dl~~~~s~e~g~~~~~~~~~ 284 (312)
T PF00206_consen 205 GTSLGIDREFQERVAEELGEFTGLGVPAPNWHDAVSSRDRLAELASALALLAGTLSKIAEDLRLLSSTEIGEVEEPFPEG 284 (312)
T ss_dssp SSHTTSHHHHHHHHHHHHHHHHCSTEECSSHHHHHHCTHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTTSSEEEEGGGS
T ss_pred ccccccCcchhhhHHhhhhhhhhcccchhhcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhCCceeeeecccccc
Confidence 556667776 8999999 766 88898999999999999999999999999999999999999999999999876
Q ss_pred CCCCCCCCCCCChhHHHHHHHHHhhhhh
Q psy15027 122 LTGSSIMPQKKNPDILELIRGKTGRVYG 149 (314)
Q Consensus 122 ~~GSSiMPqKrNP~~~E~ir~~a~~v~g 149 (314)
++|||+|||||||+.+|+++++|++++|
T Consensus 285 ~~GSS~MP~K~NP~~~E~i~~~a~~v~G 312 (312)
T PF00206_consen 285 QVGSSIMPHKRNPVILENIRGLARQVIG 312 (312)
T ss_dssp SSCSSSSTTCEETHHHHHHHHHHHHHHH
T ss_pred cCCCccCCCCCCCHHHHHHHHhhhcCcC
Confidence 5699999999999999999999999986
No 46
>KOG1317|consensus
Probab=99.89 E-value=2e-23 Score=192.75 Aligned_cols=204 Identities=20% Similarity=0.225 Sum_probs=175.1
Q ss_pred HHHHHHcCCCC-CCCCcchhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC---CceeeccCCCCCCCCCCCCCCC
Q psy15027 58 YRTTELLHFDS-PSGNSLDSISDRDFIIEFLSHCSITIMHLSRISEEFIIFMNPQ---FDYVSLPDSLLTGSSIMPQKKN 133 (314)
Q Consensus 58 ~~la~~LGf~~-~~~ns~d~~~~RD~~~e~~~~la~la~~L~kiA~Dl~l~ss~e---~gei~lp~~~~~GSSiMPqKrN 133 (314)
++++++.||.. ..+|-|.+.+.||.++|+..+|..++.+|-||++|++++.|.+ +||+.+|+ -.+||||||.|.|
T Consensus 272 ~~va~ltgLpFvtApNkFEALAahDA~VE~~GalNt~A~SlmKianDIRfLGSGPRcGlgEL~LPE-NEPGSSIMPGKVN 350 (487)
T KOG1317|consen 272 ARVAELTGLPFVTAPNKFEALAAHDAMVEVSGALNTIAVSLMKIANDIRFLGSGPRCGLGELMLPE-NEPGSSIMPGKVN 350 (487)
T ss_pred HHHHHHhCCCceecccHHHHHHhhhhHHHhcccHHHHHHHHHHHhhhhhhccCCCCCCccccccCC-CCCCcccCCCCCC
Confidence 47999999996 5678899999999999999999999999999999999999985 99999996 5799999999999
Q ss_pred hhHHHHHHHHHhhhhhhHHHHHHHHhcCcccccchhhhcch----hHHHHHHHHHHHHHHHH-hchhcceechhhhHHhh
Q psy15027 134 PDILELIRGKTGRVYGNLFNMLTIMKSQPLAYNKDMQECKQ----PLVDSIETLNMCLTAFK-LILDNVKFNTGRMYVSA 208 (314)
Q Consensus 134 P~~~E~ir~~a~~v~g~~~~~l~~~~~~~~~~~rDl~~~~~----~L~~~~~~~~~~l~~~~-~~l~~l~vn~erm~~~l 208 (314)
|.-||.+...|.+|.|+...+...-.+.. .++...++ ++...+.++.++.-.|+ .|+.+|+.|++|+.+.+
T Consensus 351 PTQcEamTmvcaQVMGN~vAvtvgGsnGh----FELNVFKP~i~~nvL~SirLl~D~~~sF~~nCV~GI~aN~erI~kll 426 (487)
T KOG1317|consen 351 PTQCEAMTMVCAQVMGNHVAVTVGGSNGH----FELNVFKPLIASNVLHSIRLLADASVSFTKNCVVGIEANKERIAKLL 426 (487)
T ss_pred cHHHHHHHHHHHHHhcCceEEEecccCce----eEEecchHHHHHHHHHHHHHhhhhhhhhhhhhhhcccCCHHHHHHHH
Confidence 99999999999999999887766554433 44555554 67788888888888887 89999999999999999
Q ss_pred ccchhHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCChhHhhHHHHHhcccCCHHHHhhcCChhHhh
Q psy15027 209 GEGFSIATDIADYLAKKKIPFRSCHEIVGKIIKFCVQEAKPLDQLSLEELKAIHEDIGEDIFEILSVEKSV 279 (314)
Q Consensus 209 ~~~~~~at~la~~L~~~Gi~~r~Ah~~v~~~v~~a~~~g~~l~e~~~~~~~~~~~~~~~~l~~~ldp~~~v 279 (314)
.+++++.|+|-+.+ +|+...++++.|+++|.++++-... ...+.+++++++..|+.++
T Consensus 427 ~eSLMLVTALNPhI---------GYD~aAkiAKtAhKng~TLk~eal~----lG~lTeeqFdewV~Pe~Ml 484 (487)
T KOG1317|consen 427 NESLMLVTALNPHI---------GYDNAAKIAKTAHKNGTTLKEEALK----LGVLTEEQFDEWVVPEKML 484 (487)
T ss_pred HhhhhhhhccCCcc---------CchhHHHHHHHHhhcCCcHHHHHHH----hcCCCHHHHHhhhCHHhcc
Confidence 99998888776665 7888888999999999998765443 3567899999999999653
No 47
>cd01594 Lyase_I_like Lyase class I_like superfamily: contains the lyase class I family, histidine ammonia-lyase and phenylalanine ammonia-lyase, which catalyze similar beta-elimination reactions. Lyase class I_like superfamily of enzymes that catalyze beta-elimination reactions and are active as homotetramers. The four active sites of the homotetrameric enzyme are each formed by residues from three different subunits. This superfamily contains the lyase class I family, histidine ammonia-lyase and phenylalanine ammonia-lyase. The lyase class I family comprises proteins similar to class II fumarase, aspartase, adenylosuccinate lyase, argininosuccinate lyase, and 3-carboxy-cis, cis-muconate lactonizing enzyme which, for the most part catalyze similar beta-elimination reactions in which a C-N or C-O bond is cleaved with the release of fumarate as one of the products. Histidine or phenylalanine ammonia-lyase catalyze a beta-elimination of ammonia from histidine and phenylalanine, respective
Probab=99.75 E-value=9.7e-18 Score=151.43 Aligned_cols=109 Identities=36% Similarity=0.477 Sum_probs=102.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceeeccCC-CCCCCCCCCCCCChhHHHHHHHHHhhhhhhHHHHHHHHhc
Q psy15027 82 FIIEFLSHCSITIMHLSRISEEFIIFMNPQFDYVSLPDS-LLTGSSIMPQKKNPDILELIRGKTGRVYGNLFNMLTIMKS 160 (314)
Q Consensus 82 ~~~e~~~~la~la~~L~kiA~Dl~l~ss~e~gei~lp~~-~~~GSSiMPqKrNP~~~E~ir~~a~~v~g~~~~~l~~~~~ 160 (314)
+++++++.++.++.+|+|||+|+++|++.|++++.+|+. .++|||+||||+||+.+|+++.++..+.+....++.+..+
T Consensus 121 ~~~~~~~~l~~~~~~l~r~a~d~~~~~~~~~~~~~~~~~~~~~gSS~mp~k~Np~~~e~~~~~~~~~~~~~~~~~~~~~~ 200 (231)
T cd01594 121 AVAEALDALALAAAHLSKIAEDLRLLLSGEFGELGEPFLPGQPGSSIMPQKVNPVAAELVRGLAGLVIGNLVAVLTALKG 200 (231)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCeeeCccCCCCCCCcCCCCCCCCHHHHHHHHHHHHHHhhHHHHHHHHhc
Confidence 689999999999999999999999999999999999986 6999999999999999999999999999999999999888
Q ss_pred CcccccchhhhcchhHHHHHHHHHHHHHHH
Q psy15027 161 QPLAYNKDMQECKQPLVDSIETLNMCLTAF 190 (314)
Q Consensus 161 ~~~~~~rDl~~~~~~L~~~~~~~~~~l~~~ 190 (314)
.+.+++.|.+..+..+++.+..+..++..+
T Consensus 201 ~~~~~~~d~~~~~~~~~~~~~~~~~~l~~~ 230 (231)
T cd01594 201 GPERDNEDSPSMREILADSLLLLIDALRLL 230 (231)
T ss_pred ccccccccCHHHHHHHHHHHHHHHHHHHHh
Confidence 777888888888899999999999888765
No 48
>PF14698 ASL_C2: Argininosuccinate lyase C-terminal; PDB: 1XWO_A 2E9F_A 1TJW_C 1TJU_A 1DCN_B 1K7W_B 1HY1_C 1TJV_B 1AUW_A 1U15_B ....
Probab=99.57 E-value=7.5e-15 Score=109.48 Aligned_cols=69 Identities=52% Similarity=0.861 Sum_probs=60.0
Q ss_pred hhHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCChhHhhHHHHHhcccCCHHHHhhcCChhHhhh
Q psy15027 212 FSIATDIADYLAKKKIPFRSCHEIVGKIIKFCVQEAKPLDQLSLEELKAIHEDIGEDIFEILSVEKSVE 280 (314)
Q Consensus 212 ~~~at~la~~L~~~Gi~~r~Ah~~v~~~v~~a~~~g~~l~e~~~~~~~~~~~~~~~~l~~~ldp~~~v~ 280 (314)
|+++|++|++||++|||||+||++|+++|+.|.++|+++.++..++++.+...+++++.++|||+.+|+
T Consensus 1 f~~ATdlAD~LVr~GipFR~AH~iVg~~V~~a~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~~~~V~ 69 (70)
T PF14698_consen 1 FSTATDLADYLVRKGIPFREAHHIVGRLVRLAEEEGKPLSELTLEELQEISPEFEEDVREALDPEASVE 69 (70)
T ss_dssp TGGHHHHHHHHHHTTS-HHHHHHHHHHHHHHHHHTTS-GGGS-HHHHHHH-TT--GGGGGGSSHHHHHT
T ss_pred CccHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCCChhhCCHHHHHHHhHHhHHHHHHHCCHHHHhc
Confidence 678999999999999999999999999999999999999999999988888888899999999999886
No 49
>PF10397 ADSL_C: Adenylosuccinate lyase C-terminus; InterPro: IPR019468 Adenylosuccinate lyase catalyses two steps in the synthesis of purine nucleotides: the conversion of succinylaminoimidazole-carboxamide ribotide into aminoimidazole-carboxamide ribotide (the fifth step of de novo IMP biosynthesis); the formation of adenosine monophosphate (AMP) from adenylosuccinate (the final step in the synthesis of AMP from IMP) []. This entry represents the C-terminal, seven alpha-helical, domain of adenylosuccinate lyase [].; PDB: 1YIS_A 1C3U_B 1C3C_A 3C8T_A 2PFM_B 1RE5_D 1Q5N_A 2VD6_D 2J91_B 2X75_A.
Probab=99.27 E-value=1.1e-11 Score=94.95 Aligned_cols=81 Identities=17% Similarity=0.174 Sum_probs=71.2
Q ss_pred cchhHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCChhHhhHHHHHhcccCCHHHHhhcCChhHhhhcccCCCCCc
Q psy15027 210 EGFSIATDIADYLAKKKIPFRSCHEIVGKIIKFCVQEAKPLDQLSLEELKAIHEDIGEDIFEILSVEKSVEHKDHVGATA 289 (314)
Q Consensus 210 ~~~~~at~la~~L~~~Gi~~r~Ah~~v~~~v~~a~~~g~~l~e~~~~~~~~~~~~~~~~l~~~ldp~~~v~~r~~~gG~a 289 (314)
+++++|+.++..|+++|++|++||++|.+++.+|.+++.+|.+++.+++.....+++++|+.+|||. .|.|.+
T Consensus 1 ~Gli~SE~v~~~L~~~G~gR~~Ah~lv~~~a~~a~~~~~~l~e~l~~d~~i~~~ls~~el~~l~dp~-------~ylg~~ 73 (81)
T PF10397_consen 1 GGLIFSERVMLALAEKGLGRQEAHELVQEAAMEAWENGRDLREVLLADPEIAAYLSEEELEELFDPE-------SYLGNA 73 (81)
T ss_dssp TTGGGHHHHHHHHHHTTH-HHHHHHHHHHHHHHHHHTTS-HHHHHCTTHHHHTTSHHHHHHHHT-GG-------GGCTTH
T ss_pred CcchHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHCCCHHHHHHCCHHHHhHCCHHHHHhhcCHH-------HHHhhH
Confidence 4788999999999999999999999999999999999999999998877655667789999999999 999999
Q ss_pred HHHHHHHH
Q psy15027 290 PSQVQHSV 297 (314)
Q Consensus 290 ~~~v~~~i 297 (314)
+.++++++
T Consensus 74 ~~i~~rv~ 81 (81)
T PF10397_consen 74 DEIVDRVL 81 (81)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHC
Confidence 99998875
No 50
>PF08328 ASL_C: Adenylosuccinate lyase C-terminal; InterPro: IPR013539 This domain is found at the C terminus of adenylosuccinate lyase(ASL; PurB in Escherichia coli). It has been identified in bacteria, eukaryotes and archaea and is found together with the lyase domain IPR000362 from INTERPRO. ASL catalyses the cleavage of succinylaminoimidazole carboxamide ribotide to aminoimidazole carboxamide ribotide and fumarate and the cleavage of adenylosuccinate to adenylate and fumarate []. ; GO: 0004018 N6-(1,2-dicarboxyethyl)AMP AMP-lyase (fumarate-forming) activity, 0006188 IMP biosynthetic process; PDB: 2HVG_A 2QGA_C 2PTS_A 2PTR_A 2PTQ_B 3BHG_A 3GZH_A.
Probab=98.20 E-value=1.2e-05 Score=64.90 Aligned_cols=76 Identities=11% Similarity=0.226 Sum_probs=65.9
Q ss_pred cccchhhhcc--hhHHHHHHHHHHHHHHHHhchhcceechhhhHHhhccchhHHHHHHHHHHHc-CCChHHHHHHHHHHH
Q psy15027 164 AYNKDMQECK--QPLVDSIETLNMCLTAFKLILDNVKFNTGRMYVSAGEGFSIATDIADYLAKK-KIPFRSCHEIVGKII 240 (314)
Q Consensus 164 ~~~rDl~~~~--~~L~~~~~~~~~~l~~~~~~l~~l~vn~erm~~~l~~~~~~at~la~~L~~~-Gi~~r~Ah~~v~~~v 240 (314)
.++||++++. +++..+|.+..-++..+..-|..|.||+++|.+.++.+|....+..+.++++ |++ ++|+.++++.
T Consensus 2 R~QRDLtDSTvlRNiGva~~~sliA~~s~lkGl~Kl~vn~~~l~~dL~~nWeVlaEpIQTvmRr~g~~--~pYE~LK~lT 79 (115)
T PF08328_consen 2 RWQRDLTDSTVLRNIGVAFGHSLIAYKSLLKGLGKLEVNEERLAEDLDENWEVLAEPIQTVMRRYGIP--NPYEKLKELT 79 (115)
T ss_dssp STTB-THHHHHHTTHHHHHHHHHHHHHHHHHHHHTEEE-HHHHHHHHCT-GGGGHHHHHHHHHHTT-S--SHHHHHHHHH
T ss_pred cccccchHHHHHHhhhHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHCHHHHHHHHHHHHHHcCCC--CHHHHHHHHH
Confidence 5789998775 6999999999999999999999999999999999999999888888999998 666 8999999887
Q ss_pred H
Q psy15027 241 K 241 (314)
Q Consensus 241 ~ 241 (314)
+
T Consensus 80 R 80 (115)
T PF08328_consen 80 R 80 (115)
T ss_dssp T
T ss_pred c
Confidence 5
No 51
>PF10415 FumaraseC_C: Fumarase C C-terminus; InterPro: IPR018951 Fumarase C catalyses the stereo-specific interconversion of fumarate to L-malate as part of the Krebs cycle. The full-length protein forms a tetramer with visible globular shape. FumaraseC_C is the C-terminal 65 residues referred to as domain 3. The core of the molecule consists of a bundle of 20 alpha-helices from the five-helix bundle of domain 2. The projections from the core of the tetramer are generated from domains 1 and 3 of each subunit []. This entry does not appear to be part of either the active site or the activation site but is helical in structure forming a little bundle. ; GO: 0016829 lyase activity, 0006099 tricarboxylic acid cycle; PDB: 3RRP_A 3OCE_D 3OCF_D 3E04_B 3GTD_A 3R6V_F 3R6Q_F 1J3U_B 1FUR_A 1YFE_A ....
Probab=97.63 E-value=9e-05 Score=52.58 Aligned_cols=53 Identities=26% Similarity=0.335 Sum_probs=43.2
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCChhHhhHHHHHhcccCCHHHHhhcCChhHhhh
Q psy15027 215 ATDIADYLAKKKIPFRSCHEIVGKIIKFCVQEAKPLDQLSLEELKAIHEDIGEDIFEILSVEKSVE 280 (314)
Q Consensus 215 at~la~~L~~~Gi~~r~Ah~~v~~~v~~a~~~g~~l~e~~~~~~~~~~~~~~~~l~~~ldp~~~v~ 280 (314)
+|.|++++ +|+.+.+++++|.++|++++|+..+. ..+++++++++|||..+++
T Consensus 2 aTaL~p~i---------GYe~aa~iAk~A~~~g~svre~v~~~----g~lt~ee~d~ll~p~~mt~ 54 (55)
T PF10415_consen 2 ATALNPYI---------GYEKAAEIAKEALAEGRSVREVVLEE----GLLTEEELDELLDPERMTN 54 (55)
T ss_dssp GGGGHHHH---------HHHHHHHHHHHHHHHT--HHHHHHHT----TSS-HHHHHHHTSHHHHTT
T ss_pred eeeccchh---------ccHHHHHHHHHHHHcCCCHHHHHHHc----CCCCHHHHHHHcCHHHcCC
Confidence 56777888 99999999999999999999998754 5578999999999998763
No 52
>COG3937 Uncharacterized conserved protein [Function unknown]
Probab=76.59 E-value=27 Score=28.14 Aligned_cols=81 Identities=22% Similarity=0.321 Sum_probs=52.0
Q ss_pred HHHHHHHHHHc-CCChHHHHHHHHHHHHHHHHcCCChhHhhHHHHHhcccCCHHHHhhcCChhHhhhcccCCCCCcHHHH
Q psy15027 215 ATDIADYLAKK-KIPFRSCHEIVGKIIKFCVQEAKPLDQLSLEELKAIHEDIGEDIFEILSVEKSVEHKDHVGATAPSQV 293 (314)
Q Consensus 215 at~la~~L~~~-Gi~~r~Ah~~v~~~v~~a~~~g~~l~e~~~~~~~~~~~~~~~~l~~~ldp~~~v~~r~~~gG~a~~~v 293 (314)
+..+++.||++ -|..++|...|.++.+++..+...+.+- ...+|..+++-..... -+--...
T Consensus 26 ~~klvDelVkkGeln~eEak~~vddl~~q~k~~~~e~e~K-----------~~r~i~~ml~~~~~~r------~~~~~~l 88 (108)
T COG3937 26 VQKLVDELVKKGELNAEEAKRFVDDLLRQAKEAQGELEEK-----------IPRKIEEMLSDLEVAR------QSEMDEL 88 (108)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHhhhHHHh-----------hhHHHHHHHhhccccc------cchHHHH
Confidence 56788999999 5999999999999999987543322111 2334555554442111 1111345
Q ss_pred HHHHHHHHHHHHHHHHhhh
Q psy15027 294 QHSVDVFENFVKDMTDLLK 312 (314)
Q Consensus 294 ~~~i~~~~~~l~~~~~~~~ 312 (314)
..=|+.+++.+.++++.++
T Consensus 89 ~~rvd~Lerqv~~Lenk~k 107 (108)
T COG3937 89 TERVDALERQVADLENKLK 107 (108)
T ss_pred HHHHHHHHHHHHHHHHHhc
Confidence 5667778888888877765
No 53
>PF14748 P5CR_dimer: Pyrroline-5-carboxylate reductase dimerisation; PDB: 2RCY_D 3TRI_A 2IZZ_B 2GR9_B 2GRA_B 2GER_C 1YQG_A 2AG8_A 3GT0_A 2AMF_E ....
Probab=72.35 E-value=26 Score=27.82 Aligned_cols=31 Identities=13% Similarity=0.176 Sum_probs=23.4
Q ss_pred hHHHHHHHHHHHcCCChHHHHHHHHHHHHHH
Q psy15027 213 SIATDIADYLAKKKIPFRSCHEIVGKIIKFC 243 (314)
Q Consensus 213 ~~at~la~~L~~~Gi~~r~Ah~~v~~~v~~a 243 (314)
.+.+.++++.++.|+++++|.+++.+.+.-+
T Consensus 22 ~~~eal~~a~v~~Gl~~~~A~~lv~~t~~G~ 52 (107)
T PF14748_consen 22 LFIEALADAAVAQGLPREEARKLVAQTFIGA 52 (107)
T ss_dssp HHHHHHHHHHHHTT--HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 4677788888888999999999999887543
No 54
>KOG2700|consensus
Probab=66.20 E-value=6.2 Score=39.31 Aligned_cols=33 Identities=18% Similarity=0.098 Sum_probs=27.2
Q ss_pred CCCCCCCCCCCCChhHHHHHHHHHhhhhhhHHH
Q psy15027 121 LLTGSSIMPQKKNPDILELIRGKTGRVYGNLFN 153 (314)
Q Consensus 121 ~~~GSSiMPqKrNP~~~E~ir~~a~~v~g~~~~ 153 (314)
...|+|.||||.||+.++...++.........+
T Consensus 326 rtl~dSa~~rivlP~~Fl~ad~~L~~~~ni~~g 358 (481)
T KOG2700|consen 326 RTLDDSANRRIVLPDAFLTADGNLGTLLNILEG 358 (481)
T ss_pred cccccccccceechHHHHHHHHHHHHHHHHHhh
Confidence 478999999999999999999988766554444
No 55
>PF01978 TrmB: Sugar-specific transcriptional regulator TrmB; InterPro: IPR002831 TrmB, is a protein of 38,800 apparent molecular weight, that is involved in the maltose-specific regulation of the trehalose/maltose ABC transport operon in Thermococcus litoralis. TrmB has been shown to be a maltose-specific repressor, and this inhibition is counteracted by maltose and trehalose. TrmB binds maltose and trehalose half-maximally at 20 uM and 0.5 mM sugar concentration, respectively []. Other members of this family are annotated as either transcriptional regulators or hypothetical proteins. ; PDB: 2D1H_A 3QPH_A 1SFX_A.
Probab=52.06 E-value=16 Score=26.19 Aligned_cols=41 Identities=20% Similarity=0.247 Sum_probs=31.9
Q ss_pred echhhhHHhh-ccchhHHHHHHHHHHHcCCChHHHHHHHHHHHHH
Q psy15027 199 FNTGRMYVSA-GEGFSIATDIADYLAKKKIPFRSCHEIVGKIIKF 242 (314)
Q Consensus 199 vn~erm~~~l-~~~~~~at~la~~L~~~Gi~~r~Ah~~v~~~v~~ 242 (314)
-++.+....+ ..+..++.+++..+ |+++..+|..+..+...
T Consensus 8 ~~E~~vy~~Ll~~~~~t~~eIa~~l---~i~~~~v~~~L~~L~~~ 49 (68)
T PF01978_consen 8 ENEAKVYLALLKNGPATAEEIAEEL---GISRSTVYRALKSLEEK 49 (68)
T ss_dssp HHHHHHHHHHHHHCHEEHHHHHHHH---TSSHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHH---CcCHHHHHHHHHHHHHC
Confidence 3455555555 57777888888888 99999999999998864
No 56
>PRK07634 pyrroline-5-carboxylate reductase; Reviewed
Probab=49.96 E-value=64 Score=28.83 Aligned_cols=75 Identities=8% Similarity=0.057 Sum_probs=46.8
Q ss_pred eechhhhHHhh---ccc----hhHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCChhHhhHHHHHhcccCCHHHHh
Q psy15027 198 KFNTGRMYVSA---GEG----FSIATDIADYLAKKKIPFRSCHEIVGKIIKFCVQEAKPLDQLSLEELKAIHEDIGEDIF 270 (314)
Q Consensus 198 ~vn~erm~~~l---~~~----~~~at~la~~L~~~Gi~~r~Ah~~v~~~v~~a~~~g~~l~e~~~~~~~~~~~~~~~~l~ 270 (314)
.++++.|.... ..+ +.+.+.+++++++.|+++++|++++..++.-+.+. + .
T Consensus 161 ~~~e~~~~~~~a~~gs~pa~~~~~~~a~~~~~~~~Gl~~~~a~~~~~~~~~g~~~~-------~---------------~ 218 (245)
T PRK07634 161 LCTEEEVHQLTAVTGSAPAFLYYFAESLIEATKSYGVDEETAKHLVIQMISGSASM-------L---------------E 218 (245)
T ss_pred EECHHHcchHHhhhcchHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH-------H---------------h
Confidence 46666665543 122 24567777888778999999999999988654221 0 0
Q ss_pred hcCChhHhhhcccCCCCCcHHHHH
Q psy15027 271 EILSVEKSVEHKDHVGATAPSQVQ 294 (314)
Q Consensus 271 ~~ldp~~~v~~r~~~gG~a~~~v~ 294 (314)
+-.+|..+.++=.++||+..+-++
T Consensus 219 ~~~~~~~l~~~v~spgG~T~~gl~ 242 (245)
T PRK07634 219 QTQDPANLREQVTTPGGSTAEGLK 242 (245)
T ss_pred CCCCHHHHHHhCCCCChHHHHHHH
Confidence 113455555555677888755443
No 57
>TIGR00112 proC pyrroline-5-carboxylate reductase. This enzyme catalyzes the final step in proline biosynthesis. Among the four paralogs in Bacillus subtilis (proG, proH, proI, and comER), ComER is the most divergent and does not prevent proline auxotrophy from mutation of the other three. It is excluded from the seed and scores between the trusted and noise cutoffs.
Probab=41.40 E-value=1.5e+02 Score=26.80 Aligned_cols=47 Identities=21% Similarity=0.306 Sum_probs=33.7
Q ss_pred hcceechhhhHHhhc---cc----hhHHHHHHHHHHHcCCChHHHHHHHHHHHH
Q psy15027 195 DNVKFNTGRMYVSAG---EG----FSIATDIADYLAKKKIPFRSCHEIVGKIIK 241 (314)
Q Consensus 195 ~~l~vn~erm~~~l~---~~----~~~at~la~~L~~~Gi~~r~Ah~~v~~~v~ 241 (314)
.-+.|+++.+..... .+ +.+.+.++++.++.|+++++|.+++.+.+.
T Consensus 136 ~~~~v~E~~~~~~talsgsgPA~~~~~~~al~~~~v~~Gl~~~~A~~lv~~~~~ 189 (245)
T TIGR00112 136 EVVELPEALMDAVTALSGSGPAYVFLFIEALADAGVKQGLPRELALELAAQTVK 189 (245)
T ss_pred CEEEECHHHcchHHhhccCcHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 445677776655432 22 446677778888889999999999998874
No 58
>COG0345 ProC Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism]
Probab=34.28 E-value=3.9e+02 Score=24.95 Aligned_cols=54 Identities=15% Similarity=0.169 Sum_probs=38.4
Q ss_pred HHHhchhcceechhhhHHhh---cc----chhHHHHHHHHHHHcCCChHHHHHHHHHHHHH
Q psy15027 189 AFKLILDNVKFNTGRMYVSA---GE----GFSIATDIADYLAKKKIPFRSCHEIVGKIIKF 242 (314)
Q Consensus 189 ~~~~~l~~l~vn~erm~~~l---~~----~~~~at~la~~L~~~Gi~~r~Ah~~v~~~v~~ 242 (314)
+|..+=+-.+|+++.|.... .. -|.+.+++++.-++.|+|+++|++.+.+.+.=
T Consensus 147 l~~~~G~v~~v~E~~~da~TaisGSgPAyv~~~iEal~~agv~~Gl~~~~A~~l~~~t~~G 207 (266)
T COG0345 147 LLSAVGKVVEVEESLMDAVTALSGSGPAYVFLFIEALADAGVRLGLPREEARELAAQTVAG 207 (266)
T ss_pred HHHhcCCeEEechHHhhHHHHHhcCCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 33444455688888887754 22 23467778888888899999999999988743
No 59
>PF12643 MazG-like: MazG-like family
Probab=33.74 E-value=1.6e+02 Score=23.16 Aligned_cols=56 Identities=20% Similarity=0.210 Sum_probs=39.6
Q ss_pred HHHHHHHHhchhcceechhhhHHhhccchhHHHHHHHHHHHcCCChHHHHHHHHHHHHH
Q psy15027 184 NMCLTAFKLILDNVKFNTGRMYVSAGEGFSIATDIADYLAKKKIPFRSCHEIVGKIIKF 242 (314)
Q Consensus 184 ~~~l~~~~~~l~~l~vn~erm~~~l~~~~~~at~la~~L~~~Gi~~r~Ah~~v~~~v~~ 242 (314)
...+..|....++-.++.++|.+.+..-.+.+--+++.| |++|++--++|.+-.+.
T Consensus 17 ~el~elfq~~~~~~~~~~e~i~deLAdvii~~ylLa~rL---Gid~~~lD~~i~~KL~~ 72 (98)
T PF12643_consen 17 SELLELFQWLTSGSEVAQEAIKDELADVIIYCYLLADRL---GIDFRELDEIIKEKLKK 72 (98)
T ss_pred HHHHHHHhhcccCcchHHHHHHHHHHHHHHHHHHHHHHh---CCCHHHHHHHHHHHHHh
Confidence 366777888888888888999998877666544444444 99988777766655543
No 60
>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=33.69 E-value=3.1e+02 Score=28.48 Aligned_cols=63 Identities=21% Similarity=0.309 Sum_probs=46.6
Q ss_pred hhHHHHHHHHHHHHHHHHhchhcceechhhhHHhhccchhHHHHHHHHHHHc-CCChHHHHHHHHHHHH
Q psy15027 174 QPLVDSIETLNMCLTAFKLILDNVKFNTGRMYVSAGEGFSIATDIADYLAKK-KIPFRSCHEIVGKIIK 241 (314)
Q Consensus 174 ~~L~~~~~~~~~~l~~~~~~l~~l~vn~erm~~~l~~~~~~at~la~~L~~~-Gi~~r~Ah~~v~~~v~ 241 (314)
..+-++...+..+...+...++.+.+||+++.+....=+. ...|.+| |.+..+.-+...++..
T Consensus 269 ~~l~ea~~~l~ea~~el~~~~~~le~Dp~~L~~ve~Rl~~-----L~~l~RKY~~~~~~l~~~~~~~~~ 332 (557)
T COG0497 269 ELLEEALYELEEASEELRAYLDELEFDPNRLEEVEERLFA-----LKSLARKYGVTIEDLLEYLDKIKE 332 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH-----HHHHHHHhCCCHHHHHHHHHHHHH
Confidence 4567788888888999999999999999999886544332 2456676 7777776666665543
No 61
>PF03861 ANTAR: ANTAR domain; InterPro: IPR005561 ANTAR (AmiR and NasR transcription antitermination regulators) is an RNA-binding domain found in bacterial transcription antitermination regulatory proteins []. This domain has been detected in various response regulators of two-component systems, which are structured around two proteins, a histidine kinase and a response regulator. This domain is also found in one-component sensory regulators from a variety of bacteria. Most response regulators interact with DNA, however ANTAR-containing regulators interact with RNA. The majority of the domain consists of a coiled-coil.; PDB: 4AKK_A 1SD5_A 1S8N_A 1QO0_E.
Probab=33.65 E-value=1.3e+02 Score=20.73 Aligned_cols=31 Identities=6% Similarity=0.172 Sum_probs=20.8
Q ss_pred HHHHc-CCChHHHHHHHHHHHHHHHHcCCChhHhh
Q psy15027 221 YLAKK-KIPFRSCHEIVGKIIKFCVQEAKPLDQLS 254 (314)
Q Consensus 221 ~L~~~-Gi~~r~Ah~~v~~~v~~a~~~g~~l~e~~ 254 (314)
.|+.. |++-.+||+.+.+.++ ..+.++.++.
T Consensus 21 iLm~~~g~~e~~A~~~Lr~~Am---~~~~~l~~vA 52 (56)
T PF03861_consen 21 ILMARYGLSEDEAYRLLRRQAM---RRRRSLADVA 52 (56)
T ss_dssp HHHHHHT--HHHHHHHHHHHHH---HCTS-HHHHH
T ss_pred HHHHHhCcCHHHHHHHHHHHHH---HcCCCHHHHH
Confidence 45554 9999999999997665 4688877665
No 62
>PHA02675 ORF104 fusion protein; Provisional
Probab=33.59 E-value=46 Score=25.59 Aligned_cols=47 Identities=21% Similarity=0.208 Sum_probs=36.0
Q ss_pred hHHHHHHHHHHHHHHHHhchhcceechhhhHHhhccchhHHHHHHHHHHHcCCChHHHH
Q psy15027 175 PLVDSIETLNMCLTAFKLILDNVKFNTGRMYVSAGEGFSIATDIADYLAKKKIPFRSCH 233 (314)
Q Consensus 175 ~L~~~~~~~~~~l~~~~~~l~~l~vn~erm~~~l~~~~~~at~la~~L~~~Gi~~r~Ah 233 (314)
.|.+.+..+..++......|+.|+=+.+.++++ +-.|.+| |+.|.+|
T Consensus 41 ~L~k~~~~i~~cC~~~~~~L~RLE~H~ETLRk~-----------Ml~L~KK-IDVQTG~ 87 (90)
T PHA02675 41 SLLDSYKTITDCCRETGARLDRLERHLETLREA-----------LLKLNTK-IDVQTGY 87 (90)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHhh-cceeccc
Confidence 577888889999999999999888888888886 2335554 6666655
No 63
>PTZ00431 pyrroline carboxylate reductase; Provisional
Probab=32.51 E-value=1.2e+02 Score=27.77 Aligned_cols=52 Identities=13% Similarity=0.043 Sum_probs=35.5
Q ss_pred HHhchhcceechhhhHHhh--c-c----chhHHHHHHHHHHHcCCChHHHHHHHHHHHH
Q psy15027 190 FKLILDNVKFNTGRMYVSA--G-E----GFSIATDIADYLAKKKIPFRSCHEIVGKIIK 241 (314)
Q Consensus 190 ~~~~l~~l~vn~erm~~~l--~-~----~~~~at~la~~L~~~Gi~~r~Ah~~v~~~v~ 241 (314)
|..+=.-..|+++.|.... . . -+.+.+.++++.++.|+++++|.+++.+.+.
T Consensus 144 ~~~~G~~~~v~E~~~d~~ta~~gsgPA~~~~~~~al~~~~v~~Gl~~~~a~~l~~~~~~ 202 (260)
T PTZ00431 144 FSACGIIQEIKEKDMDIATAISGCGPAYVFLFIESLIDAGVKNGLNRDVSKNLVLQTIL 202 (260)
T ss_pred HHhCCcEEEEChHHcchhhhhcCCHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 3334444577877666543 1 2 2345667777777779999999999998874
No 64
>KOG3915|consensus
Probab=32.24 E-value=37 Score=34.15 Aligned_cols=8 Identities=50% Similarity=0.729 Sum_probs=4.8
Q ss_pred CCCCCCCC
Q psy15027 125 SSIMPQKK 132 (314)
Q Consensus 125 SSiMPqKr 132 (314)
+-|||||.
T Consensus 291 ~hi~~~~~ 298 (641)
T KOG3915|consen 291 SHIMPHSV 298 (641)
T ss_pred cccccccC
Confidence 44677764
No 65
>PF05924 SAMP: SAMP Motif; InterPro: IPR009224 This short region is found repeated in the mid region of the adenomatous polyposis proteins (APCs). This motif binds axin [].; GO: 0008013 beta-catenin binding, 0016055 Wnt receptor signaling pathway; PDB: 1EMU_B 2RQU_B.
Probab=29.13 E-value=16 Score=20.45 Aligned_cols=9 Identities=33% Similarity=0.774 Sum_probs=3.1
Q ss_pred CCCCCCCCC
Q psy15027 125 SSIMPQKKN 133 (314)
Q Consensus 125 SSiMPqKrN 133 (314)
+|+||.|+-
T Consensus 11 ~sAmPk~~~ 19 (20)
T PF05924_consen 11 GSAMPKRRR 19 (20)
T ss_dssp HCTS-----
T ss_pred HHhcccccC
Confidence 578998764
No 66
>TIGR01837 PHA_granule_1 poly(hydroxyalkanoate) granule-associated protein. This model describes a domain found in some proteins associated with polyhydroxyalkanoate (PHA) granules in a subset of species that have PHA inclusion granules. Included are two tandem proteins of Pseudomonas oleovorans, PhaI and PhaF, and their homologs in related species. PhaF proteins have a low-complexity C-terminal region with repeats similar to AAAKP.
Probab=29.04 E-value=2.5e+02 Score=22.73 Aligned_cols=30 Identities=7% Similarity=0.092 Sum_probs=21.9
Q ss_pred HHHHHHHHHHcC-CChHHHHHHHHHHHHHHH
Q psy15027 215 ATDIADYLAKKK-IPFRSCHEIVGKIIKFCV 244 (314)
Q Consensus 215 at~la~~L~~~G-i~~r~Ah~~v~~~v~~a~ 244 (314)
++.+.+.||++| +.-+++...+.+++....
T Consensus 24 ~~k~~~~LVkkGe~~~ee~k~~~~e~~~~~~ 54 (118)
T TIGR01837 24 GSKFFNRLVKEGELAEKRGQKRFDESVDAAR 54 (118)
T ss_pred HHHHHHHHHHhccccHHHHHHHHHHHHHHHH
Confidence 356778888885 677788888887776654
No 67
>COG3799 Mal Methylaspartate ammonia-lyase [Amino acid transport and metabolism]
Probab=28.97 E-value=55 Score=31.28 Aligned_cols=43 Identities=21% Similarity=0.166 Sum_probs=32.2
Q ss_pred echhhhHHhhccchhHHHHHHHHHHHcCCChHHHHHHHHHHHH
Q psy15027 199 FNTGRMYVSAGEGFSIATDIADYLAKKKIPFRSCHEIVGKIIK 241 (314)
Q Consensus 199 vn~erm~~~l~~~~~~at~la~~L~~~Gi~~r~Ah~~v~~~v~ 241 (314)
-|+--.....+-...++|..+..|++-||+|.+++.+|..=.+
T Consensus 358 CnETdvSAr~cvHValAt~a~~mLaKPGMGfDeg~~iV~NEmn 400 (410)
T COG3799 358 CNETDVSARTCVHVALATRAMRMLAKPGMGFDEGLDIVFNEMN 400 (410)
T ss_pred ccccchhhhhhhhhhhhhcHHHHhcCCCCCchhHHHHHHHHHH
Confidence 3444444444556778999999998889999999999986443
No 68
>COG2718 Uncharacterized conserved protein [Function unknown]
Probab=28.85 E-value=36 Score=33.50 Aligned_cols=16 Identities=63% Similarity=1.259 Sum_probs=6.6
Q ss_pred ccCCCCCCCCCCCCCC
Q psy15027 11 RPTGGGGGESGDGGES 26 (314)
Q Consensus 11 ~~~~~~~~~~~~~~~~ 26 (314)
||.||||+.+|.|+-+
T Consensus 90 r~~~ggg~g~g~g~~a 105 (423)
T COG2718 90 RPQGGGGGGSGKGQAA 105 (423)
T ss_pred cCCCCCCCCCCCCCcc
Confidence 3444444433333333
No 69
>cd04444 DEP_PLEK2 DEP (Dishevelled, Egl-10, and Pleckstrin) domain found in pleckstrin 2-like proteins. Pleckstrin 2 is found in a wide variety of cell types, which suggest a more general role in signaling than pleckstrin 1. Pleckstrin-like proteins contain a central DEP domain, flanked by 2 PH (pleckstrin homology) domains.
Probab=28.28 E-value=1.5e+02 Score=24.04 Aligned_cols=56 Identities=5% Similarity=0.052 Sum_probs=39.0
Q ss_pred HHHHHHhchhcceechhhhHHhhccchhHHHHHHHHHHHc--CCChHHHHHHHHHHHH
Q psy15027 186 CLTAFKLILDNVKFNTGRMYVSAGEGFSIATDIADYLAKK--KIPFRSCHEIVGKIIK 241 (314)
Q Consensus 186 ~l~~~~~~l~~l~vn~erm~~~l~~~~~~at~la~~L~~~--Gi~~r~Ah~~v~~~v~ 241 (314)
....|..-..||++-..+-.-.....-.+..+++++|+.. -++|++|..+..+++.
T Consensus 5 L~~~mq~~~~Gik~~~~r~~~k~y~~CF~Gse~VDWLv~~~~~i~R~EAv~l~q~Lmd 62 (109)
T cd04444 5 IVDKMHDSSTGIRHSPNMEQGSTYKKTFLGSALVDWLISNSFAASRLEAVTLASMLME 62 (109)
T ss_pred HHHHHhCCCcCcchhhhhhccccccccccchHHHHHHHHCCCCCCHHHHHHHHHHHHh
Confidence 3455666677777644333333344455788899999997 5899999998888874
No 70
>PRK12491 pyrroline-5-carboxylate reductase; Reviewed
Probab=28.00 E-value=1.6e+02 Score=27.29 Aligned_cols=46 Identities=15% Similarity=0.199 Sum_probs=33.9
Q ss_pred cceechhhhHHhh---ccc----hhHHHHHHHHHHHcCCChHHHHHHHHHHHH
Q psy15027 196 NVKFNTGRMYVSA---GEG----FSIATDIADYLAKKKIPFRSCHEIVGKIIK 241 (314)
Q Consensus 196 ~l~vn~erm~~~l---~~~----~~~at~la~~L~~~Gi~~r~Ah~~v~~~v~ 241 (314)
-+.++++.|.... ..+ +.+.+.++++.++.|+++++|++++.+...
T Consensus 157 ~~~~~E~~~d~~talsgsgPAf~~~~~eal~~a~v~~Gl~~~~A~~l~~~t~~ 209 (272)
T PRK12491 157 TEVVNEKLMDVVTSISGSSPAYVYMFIEAMADAAVLGGMPRKQAYKFAAQAVL 209 (272)
T ss_pred EEEEcHHHhhhHHHhccCcHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 3577888877654 222 346677777777789999999999998764
No 71
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=27.61 E-value=51 Score=32.81 Aligned_cols=27 Identities=33% Similarity=0.721 Sum_probs=14.4
Q ss_pred CCCCCCCCCCCCCCCCccccccCCCcc
Q psy15027 15 GGGGESGDGGESGDGGKSEGKSGGGSE 41 (314)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 41 (314)
+|||++|.+|..|.+++....++|++.
T Consensus 394 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 420 (456)
T PRK10590 394 RGGGGRGQGGGRGQQQGQPRRGEGGAK 420 (456)
T ss_pred CCCCCCCCCCCCCCCCCCCCcCCCCCc
Confidence 334455556666666655555555543
No 72
>COG1378 Predicted transcriptional regulators [Transcription]
Probab=25.54 E-value=98 Score=28.51 Aligned_cols=44 Identities=14% Similarity=0.217 Sum_probs=34.8
Q ss_pred cceechhhhHHhh-ccchhHHHHHHHHHHHcCCChHHHHHHHHHHHHH
Q psy15027 196 NVKFNTGRMYVSA-GEGFSIATDIADYLAKKKIPFRSCHEIVGKIIKF 242 (314)
Q Consensus 196 ~l~vn~erm~~~l-~~~~~~at~la~~L~~~Gi~~r~Ah~~v~~~v~~ 242 (314)
|+.-++.+....| ..+-++|.+++... |+|+..-|+++..+..+
T Consensus 13 Glt~yEa~vY~aLl~~g~~tA~eis~~s---gvP~~kvY~vl~sLe~k 57 (247)
T COG1378 13 GLTEYEAKVYLALLCLGEATAKEISEAS---GVPRPKVYDVLRSLEKK 57 (247)
T ss_pred CCCHHHHHHHHHHHHhCCccHHHHHHHc---CCCchhHHHHHHHHHHC
Confidence 4555777777776 56888888887776 99999999999988764
No 73
>PHA00370 III attachment protein
Probab=25.49 E-value=84 Score=29.28 Aligned_cols=48 Identities=10% Similarity=-0.071 Sum_probs=26.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceeeccCCCCCCCCCCCC
Q psy15027 80 RDFIIEFLSHCSITIMHLSRISEEFIIFMNPQFDYVSLPDSLLTGSSIMPQ 130 (314)
Q Consensus 80 RD~~~e~~~~la~la~~L~kiA~Dl~l~ss~e~gei~lp~~~~~GSSiMPq 130 (314)
.|.-..+-..+..+..+++.+-.++--+.-+.=++ .-.+..++|.|-|
T Consensus 170 ~da~~~~d~~~~~~~dsi~~~~rgvg~~~d~~~g~---sg~~~~~~s~md~ 217 (297)
T PHA00370 170 KDADEQLDKASASVSDAISGFMRGVGGLVDNGGGE---SGQFAGSNSEMDQ 217 (297)
T ss_pred hhhhhhhHHHHHHhHHhhhhhhhccccccCCCCcc---cccccCchhhhhh
Confidence 34555555666666677776666655443221111 1125678888873
No 74
>PHA00370 III attachment protein
Probab=24.19 E-value=2.8e+02 Score=25.93 Aligned_cols=19 Identities=5% Similarity=-0.136 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy15027 83 IIEFLSHCSITIMHLSRIS 101 (314)
Q Consensus 83 ~~e~~~~la~la~~L~kiA 101 (314)
+..+...+.-++-..++|+
T Consensus 180 ~~~~~dsi~~~~rgvg~~~ 198 (297)
T PHA00370 180 SASVSDAISGFMRGVGGLV 198 (297)
T ss_pred HHHhHHhhhhhhhcccccc
Confidence 3455556666666666653
No 75
>TIGR02877 spore_yhbH sporulation protein YhbH. This protein family, typified by YhbH in Bacillus subtilis, is found in nearly every endospore-forming bacterium and in no other genome (but note that the trusted cutoff score is set high to exclude a single high-scoring sequence from Nitrosococcus oceani ATCC 19707, which is classified in the Gammaproteobacteria). The gene in Bacillus subtilis was shown to be in the regulon of the sporulation sigma factor, sigma-E, and its mutation was shown to create a sporulation defect.
Probab=22.88 E-value=61 Score=31.83 Aligned_cols=12 Identities=25% Similarity=0.166 Sum_probs=8.0
Q ss_pred ccccHHHHHHHc
Q psy15027 53 HPIDRYRTTELL 64 (314)
Q Consensus 53 ~~idr~~la~~L 64 (314)
++|.++.+++.|
T Consensus 112 ~e~s~eE~~~~l 123 (371)
T TIGR02877 112 TEVTLEELFELL 123 (371)
T ss_pred EEecHHHHHHHH
Confidence 567777776655
No 76
>smart00550 Zalpha Z-DNA-binding domain in adenosine deaminases. Helix-turn-helix-containing domain. Also known as Zab.
Probab=22.48 E-value=1.5e+02 Score=21.35 Aligned_cols=38 Identities=18% Similarity=0.246 Sum_probs=26.1
Q ss_pred hhhhHHhh-ccch--hHHHHHHHHHHHcCCChHHHHHHHHHHHH
Q psy15027 201 TGRMYVSA-GEGF--SIATDIADYLAKKKIPFRSCHEIVGKIIK 241 (314)
Q Consensus 201 ~erm~~~l-~~~~--~~at~la~~L~~~Gi~~r~Ah~~v~~~v~ 241 (314)
++++.+.+ ..+- +.+.+++..| |++...++..+..+-.
T Consensus 8 ~~~IL~~L~~~g~~~~ta~eLa~~l---gl~~~~v~r~L~~L~~ 48 (68)
T smart00550 8 EEKILEFLENSGDETSTALQLAKNL---GLPKKEVNRVLYSLEK 48 (68)
T ss_pred HHHHHHHHHHCCCCCcCHHHHHHHH---CCCHHHHHHHHHHHHH
Confidence 34444444 2333 6788888887 9999998888887664
No 77
>PRK14127 cell division protein GpsB; Provisional
Probab=22.08 E-value=1.9e+02 Score=23.36 Aligned_cols=28 Identities=7% Similarity=0.026 Sum_probs=19.9
Q ss_pred CCCCCcHHHHHHHHHHHHHHHHHHHHhh
Q psy15027 284 HVGATAPSQVQHSVDVFENFVKDMTDLL 311 (314)
Q Consensus 284 ~~gG~a~~~v~~~i~~~~~~l~~~~~~~ 311 (314)
+.-|..+++|+.+++.+....+.+.+.+
T Consensus 19 ~~RGYd~~EVD~FLd~V~~dye~l~~e~ 46 (109)
T PRK14127 19 SMRGYDQDEVDKFLDDVIKDYEAFQKEI 46 (109)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 3459999999999988876655444433
No 78
>PF07328 VirD1: T-DNA border endonuclease VirD1; InterPro: IPR009933 This family consists of several T-DNA border endonuclease VirD1 proteins, which appear to be found exclusively in Agrobacterium species. Agrobacterium, a plant pathogen, is capable to stably transform the plant cell with a segment of its own DNA called T-DNA (transferred DNA). This process depends, among others, on the specialised bacterial virulence proteins VirD1 and VirD2 that excise the T-DNA from its adjacent sequences. VirD1 is thought to interact with VirD2 in this process [].; GO: 0004519 endonuclease activity
Probab=21.28 E-value=4.5e+02 Score=22.08 Aligned_cols=108 Identities=14% Similarity=0.150 Sum_probs=56.8
Q ss_pred CccccHHHHHHHcCCCCCCCCcchhhhchHHHHHHHHH---HHHHHHHHHHHHHHHHHHhcCCCceeeccCCCCCCCCCC
Q psy15027 52 THPIDRYRTTELLHFDSPSGNSLDSISDRDFIIEFLSH---CSITIMHLSRISEEFIIFMNPQFDYVSLPDSLLTGSSIM 128 (314)
Q Consensus 52 ~~~idr~~la~~LGf~~~~~ns~d~~~~RD~~~e~~~~---la~la~~L~kiA~Dl~l~ss~e~gei~lp~~~~~GSSiM 128 (314)
..++||.+-.+..||+.. +.|=+-+||.++ +..+..+ ..+| +++.-+.-=||++++.
T Consensus 11 d~~~~~~~~~~~~g~kVv--------SvRlr~AE~esfs~q~~~lGl~-~n~a--lRVavrri~GFLEiDa--------- 70 (147)
T PF07328_consen 11 DIAVDRRRSLKIEGFKVV--------SVRLRSAEYESFSAQARELGLS-DNMA--LRVAVRRIGGFLEIDA--------- 70 (147)
T ss_pred cchhhhhccccccCceEE--------eehhhHHHHHHHHHHHHHhCCc-hhhH--HHHHHHHHcchhhccH---------
Confidence 456788777778888743 334444444333 2222222 2222 3333344346666553
Q ss_pred CCCCChhHHHHHHHHHhhhhhhHHHHHHHHhcCcccccchhhhc-------chhHHHHHHHHHHHHHH
Q psy15027 129 PQKKNPDILELIRGKTGRVYGNLFNMLTIMKSQPLAYNKDMQEC-------KQPLVDSIETLNMCLTA 189 (314)
Q Consensus 129 PqKrNP~~~E~ir~~a~~v~g~~~~~l~~~~~~~~~~~rDl~~~-------~~~L~~~~~~~~~~l~~ 189 (314)
...+.++.+.+.+-+....+...++. |++|...+ ...+-..|..+...|+.
T Consensus 71 ------~tr~~l~~il~sIg~la~Nin~i~~A----a~~~~~pd~e~f~aER~~fGk~fA~ld~lLr~ 128 (147)
T PF07328_consen 71 ------ETRQKLEDILRSIGGLATNINQILKA----ANRTPRPDYEAFRAERKAFGKEFADLDALLRS 128 (147)
T ss_pred ------HHHHHHHHHHHHHHHHHHHHHHHHHH----HhcCCCccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47777888777776666666555543 44444322 23444455555444443
No 79
>COG2854 Ttg2D ABC-type transport system involved in resistance to organic solvents, auxiliary component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=21.23 E-value=3.6e+02 Score=24.22 Aligned_cols=73 Identities=7% Similarity=0.160 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHHHHH---cCCChhHhhHHHHHhcccCCHHHHhhcCChhHhhh--cccCCCCCcHHHHHHHHHHHHHHHH
Q psy15027 231 SCHEIVGKIIKFCVQ---EAKPLDQLSLEELKAIHEDIGEDIFEILSVEKSVE--HKDHVGATAPSQVQHSVDVFENFVK 305 (314)
Q Consensus 231 ~Ah~~v~~~v~~a~~---~g~~l~e~~~~~~~~~~~~~~~~l~~~ldp~~~v~--~r~~~gG~a~~~v~~~i~~~~~~l~ 305 (314)
++|..+.+.+.++.. .+.+ ....+++......++++...+|.+..-. .=+.+=.++|++++++.+.++..|.
T Consensus 28 ~~~~~v~~~a~~~ls~lk~~~~---~~k~dp~~l~~~v~~~l~p~vd~~~~a~~vLGk~~k~aspeQ~~~F~~aF~~yl~ 104 (202)
T COG2854 28 NPYSLVQEAADKVLSILKNNQA---KIKQDPQYLRQIVDQELLPYVDFKYAAKLVLGKYYKTASPEQRQAFFKAFRTYLE 104 (202)
T ss_pred chHHHHHHHHHHHHHHHhccch---hhccCHHHHHHHHHHHhhhhhcHHHHHHHHhccccccCCHHHHHHHHHHHHHHHH
Confidence 688888888877654 2211 1111222222223444444455443321 1145667899999999999998876
Q ss_pred H
Q psy15027 306 D 306 (314)
Q Consensus 306 ~ 306 (314)
.
T Consensus 105 q 105 (202)
T COG2854 105 Q 105 (202)
T ss_pred H
Confidence 3
No 80
>PF09904 HTH_43: Winged helix-turn helix; InterPro: IPR017162 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.; PDB: 3KE2_B.
Probab=21.20 E-value=68 Score=25.04 Aligned_cols=22 Identities=14% Similarity=0.264 Sum_probs=14.0
Q ss_pred HHHHHHc-CCChHHHHHHHHHHH
Q psy15027 219 ADYLAKK-KIPFRSCHEIVGKII 240 (314)
Q Consensus 219 a~~L~~~-Gi~~r~Ah~~v~~~v 240 (314)
.+.|++. |||+|.+++.+..+.
T Consensus 24 vp~L~~~TGmPrRT~Qd~i~aL~ 46 (90)
T PF09904_consen 24 VPALMEATGMPRRTIQDTIKALP 46 (90)
T ss_dssp HHHHHHHH---HHHHHHHHHGGG
T ss_pred HHHHHHHhCCCHhHHHHHHHHhh
Confidence 3556666 999999999887654
No 81
>KOG4212|consensus
Probab=21.01 E-value=57 Score=32.71 Aligned_cols=56 Identities=23% Similarity=0.236 Sum_probs=34.9
Q ss_pred ccccCCCcccccccccCCCCccccHHHHHHHcCCCCCCCCcchhhhchHHHHHHHHHHH
Q psy15027 33 EGKSGGGSESGDENGGGGTTHPIDRYRTTELLHFDSPSGNSLDSISDRDFIIEFLSHCS 91 (314)
Q Consensus 33 ~~~~~~~~~~G~~aA~~gt~~~idr~~la~~LGf~~~~~ns~d~~~~RD~~~e~~~~la 91 (314)
.-.+|||+++|+...-++...-.-| .-+... -.-.+-.+.|..-||.+-|+..++-
T Consensus 510 ~dv~gggs~~g~~ngagg~a~gaar-Ka~qIi--irNlP~dfTWqmlrDKfre~G~v~y 565 (608)
T KOG4212|consen 510 LDVYGGGSNVGNSNGAGGNAVGAAR-KACQII--IRNLPFDFTWQMLRDKFREIGHVLY 565 (608)
T ss_pred hhhcCCccccccccccccccccccc-cccEEE--EecCCccccHHHHHHHHHhccceeh
Confidence 3467888888888777666555544 222211 1112224559999999999987653
No 82
>PF02022 Integrase_Zn: Integrase Zinc binding domain The structure of the N-terminal zinc binding domain.; InterPro: IPR003308 Retroviral integrase mediates integration of a DNA copy of the viral genome into the host chromosome. Integrase is composed of three domains: an N-terminal zinc binding domain, a central catalytic core and a C-terminal DNA-binding domain [, ]. Often found as part of the POL polyprotein.; GO: 0008270 zinc ion binding; PDB: 1E0E_A 3F9K_F 1E27_C 1K6Y_B 1WJD_A 1WJB_A 1WJF_A 1WJE_B 3HPG_B 3HPH_C ....
Probab=20.42 E-value=92 Score=20.45 Aligned_cols=20 Identities=30% Similarity=0.345 Sum_probs=13.3
Q ss_pred HHHHHc-CCChHHHHHHHHHH
Q psy15027 220 DYLAKK-KIPFRSCHEIVGKI 239 (314)
Q Consensus 220 ~~L~~~-Gi~~r~Ah~~v~~~ 239 (314)
..|..+ |+|+..|.+||..+
T Consensus 13 ~~L~~~f~ip~~vAk~IV~~C 33 (40)
T PF02022_consen 13 KALRHKFGIPRLVAKQIVNQC 33 (40)
T ss_dssp HHHHHHHT--HHHHHHHHHHS
T ss_pred HHHHHHHccCHHHHHHHHHHC
Confidence 445555 99999999998764
Done!