RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy15027
(314 letters)
>gnl|CDD|179143 PRK00855, PRK00855, argininosuccinate lyase; Provisional.
Length = 459
Score = 402 bits (1036), Expect = e-139
Identities = 135/258 (52%), Positives = 183/258 (70%)
Query: 48 GGGTTHPIDRYRTTELLHFDSPSGNSLDSISDRDFIIEFLSHCSITIMHLSRISEEFIIF 107
GTT PIDR RT ELL FD + NSLD++SDRDF +EFLS S+ ++HLSR++EE I++
Sbjct: 202 LAGTTFPIDRERTAELLGFDGVTENSLDAVSDRDFALEFLSAASLLMVHLSRLAEELILW 261
Query: 108 MNPQFDYVSLPDSLLTGSSIMPQKKNPDILELIRGKTGRVYGNLFNMLTIMKSQPLAYNK 167
+ +F +V LPD+ TGSSIMPQKKNPD+ ELIRGKTGRVYGNL +LT+MK PLAYN+
Sbjct: 262 SSQEFGFVELPDAFSTGSSIMPQKKNPDVAELIRGKTGRVYGNLTGLLTVMKGLPLAYNR 321
Query: 168 DMQECKQPLVDSIETLNMCLTAFKLILDNVKFNTGRMYVSAGEGFSIATDIADYLAKKKI 227
D+QE K+PL D+++TL + L A +L+ + N RM +AG+GFS ATD+ADYL +K +
Sbjct: 322 DLQEDKEPLFDAVDTLKLSLEAMAGMLETLTVNKERMREAAGKGFSTATDLADYLVRKGV 381
Query: 228 PFRSCHEIVGKIIKFCVQEAKPLDQLSLEELKAIHEDIGEDIFEILSVEKSVEHKDHVGA 287
PFR HEIVGK ++ + L LSLEEL+A I ED++E+L+ E SV ++ +G
Sbjct: 382 PFREAHEIVGKAVREAEERGVDLADLSLEELQAFSPLITEDVYEVLTPEGSVAARNSIGG 441
Query: 288 TAPSQVQHSVDVFENFVK 305
TAP QV+ + + +
Sbjct: 442 TAPEQVREQIARAKARLA 459
>gnl|CDD|176463 cd01359, Argininosuccinate_lyase, Argininosuccinate lyase
(argininosuccinase, ASAL). This group contains ASAL and
related proteins. It is a member of the Lyase class I
family. Members of this family for the most part
catalyze similar beta-elimination reactions in which a
C-N or C-O bond is cleaved with the release of fumarate
as one of the products. These proteins are active as
tetramers. The four active sites of the homotetrameric
enzyme are each formed by residues from three different
subunits. ASAL is a cytosolic enzyme which catalyzes the
reversible breakdown of argininosuccinate to arginine
and fumarate during arginine biosynthesis. In ureotelic
species ASAL also catalyzes a reaction involved in the
production of urea. Included in this group are the major
soluble avian eye lens proteins from duck, delta 1 and
delta 2 crystallin. Of these two isoforms only delta 2
has retained ASAL activity. These crystallins may have
evolved by, gene recruitment of ASAL followed by gene
duplication. In humans, mutations in ASAL result in the
autosomal recessive disorder argininosuccinic aciduria.
Length = 435
Score = 359 bits (925), Expect = e-123
Identities = 126/258 (48%), Positives = 173/258 (67%), Gaps = 1/258 (0%)
Query: 48 GGGTTHPIDRYRTTELLHFDSPSGNSLDSISDRDFIIEFLSHCSITIMHLSRISEEFIIF 107
GTT PIDR RT ELL FD P+ NSLD++SDRDF++EFLS ++ ++HLSR++E+ I++
Sbjct: 178 LAGTTFPIDRERTAELLGFDGPTENSLDAVSDRDFVLEFLSAAALLMVHLSRLAEDLILW 237
Query: 108 MNPQFDYVSLPDSLLTGSSIMPQKKNPDILELIRGKTGRVYGNLFNMLTIMKSQPLAYNK 167
+F +V LPD+ TGSSIMPQKKNPD+LELIRGK GRV G L +LT +K PLAYNK
Sbjct: 238 STQEFGFVELPDAYSTGSSIMPQKKNPDVLELIRGKAGRVIGALAGLLTTLKGLPLAYNK 297
Query: 168 DMQECKQPLVDSIETLNMCLTAFKLILDNVKFNTGRMYVSAGEGFSIATDIADYLAKKK- 226
D+QE K+PL D+++TL L ++ + N RM +A GFS ATD+ADYL ++K
Sbjct: 298 DLQEDKEPLFDAVDTLIASLRLLTGVISTLTVNPERMREAAEAGFSTATDLADYLVREKG 357
Query: 227 IPFRSCHEIVGKIIKFCVQEAKPLDQLSLEELKAIHEDIGEDIFEILSVEKSVEHKDHVG 286
+PFR H IVG+ ++ ++ K L L+L EL+AI ED+ E L E SVE + G
Sbjct: 358 VPFREAHHIVGRAVRLAEEKGKDLSDLTLAELQAISPLFEEDVREALDPENSVERRTSYG 417
Query: 287 ATAPSQVQHSVDVFENFV 304
TAP++V+ + +
Sbjct: 418 GTAPAEVREQIARARALL 435
>gnl|CDD|223243 COG0165, ArgH, Argininosuccinate lyase [Amino acid transport and
metabolism].
Length = 459
Score = 359 bits (923), Expect = e-123
Identities = 129/254 (50%), Positives = 179/254 (70%)
Query: 48 GGGTTHPIDRYRTTELLHFDSPSGNSLDSISDRDFIIEFLSHCSITIMHLSRISEEFIIF 107
GT PIDR RT ELL FD+ + NSLD++SDRDFI+EFLS ++ ++HLSR++E+ I++
Sbjct: 201 LAGTPFPIDRERTAELLGFDAVTRNSLDAVSDRDFILEFLSAAALIMVHLSRLAEDLILW 260
Query: 108 MNPQFDYVSLPDSLLTGSSIMPQKKNPDILELIRGKTGRVYGNLFNMLTIMKSQPLAYNK 167
+P+F ++ LPD TGSSIMPQKKNPD+LELIRGK GRV G L +LTIMK PLAYN+
Sbjct: 261 SSPEFGFIELPDEFSTGSSIMPQKKNPDVLELIRGKAGRVIGALTGLLTIMKGLPLAYNR 320
Query: 168 DMQECKQPLVDSIETLNMCLTAFKLILDNVKFNTGRMYVSAGEGFSIATDIADYLAKKKI 227
D+QE K+PL DS++TL L ++ + N RM +A GFS ATD+ADYL +K +
Sbjct: 321 DLQEDKEPLFDSVDTLEDSLRVLAGMVSGLTVNKERMREAAEAGFSTATDLADYLVRKGV 380
Query: 228 PFRSCHEIVGKIIKFCVQEAKPLDQLSLEELKAIHEDIGEDIFEILSVEKSVEHKDHVGA 287
PFR HEIVG+ ++ + K L LSLEEL++I I ED++E+L+ E+SV ++ G
Sbjct: 381 PFREAHEIVGEAVRRAEERGKDLADLSLEELQSISPLIDEDVYEVLTPEESVAKRNSEGG 440
Query: 288 TAPSQVQHSVDVFE 301
TAP +V+ ++ +
Sbjct: 441 TAPEEVREAIARAK 454
>gnl|CDD|129918 TIGR00838, argH, argininosuccinate lyase. This model describes
argininosuccinate lyase, but may include examples of
avian delta crystallins, in which argininosuccinate
lyase activity may or may not be present and the
biological role is to provide the optically clear
cellular protein of the eye lens [Amino acid
biosynthesis, Glutamate family].
Length = 455
Score = 335 bits (862), Expect = e-113
Identities = 120/256 (46%), Positives = 172/256 (67%)
Query: 50 GTTHPIDRYRTTELLHFDSPSGNSLDSISDRDFIIEFLSHCSITIMHLSRISEEFIIFMN 109
GT PIDR ELL FD+ + NSLD++SDRDFI+E L ++ ++HLSR +E+ I++
Sbjct: 200 GTGFPIDREYLAELLGFDAVTENSLDAVSDRDFILELLFVAALIMVHLSRFAEDLILWST 259
Query: 110 PQFDYVSLPDSLLTGSSIMPQKKNPDILELIRGKTGRVYGNLFNMLTIMKSQPLAYNKDM 169
+F +V LPD +GSSIMPQKKNPD+ ELIRGKTGRV GNL ML +K+ PLAYN+D+
Sbjct: 260 GEFGFVELPDEFSSGSSIMPQKKNPDVAELIRGKTGRVQGNLTGMLMTLKALPLAYNRDL 319
Query: 170 QECKQPLVDSIETLNMCLTAFKLILDNVKFNTGRMYVSAGEGFSIATDIADYLAKKKIPF 229
QE K+PL D+++T+ + L +LD + N RM +A GFS AT++ADYL +K +PF
Sbjct: 320 QEDKEPLFDALKTVELSLEMATGMLDTITVNKERMEEAASAGFSNATELADYLVRKGVPF 379
Query: 230 RSCHEIVGKIIKFCVQEAKPLDQLSLEELKAIHEDIGEDIFEILSVEKSVEHKDHVGATA 289
R H IVG+++ ++ K L++L+LEEL+ + ED++E L E SVE +D G TA
Sbjct: 380 REAHHIVGELVATAIERGKGLEELTLEELQKFSPEFDEDVYEALDPESSVEKRDAKGGTA 439
Query: 290 PSQVQHSVDVFENFVK 305
P +V ++ + +
Sbjct: 440 PEEVLQAIAEAKARLG 455
>gnl|CDD|179883 PRK04833, PRK04833, argininosuccinate lyase; Provisional.
Length = 455
Score = 303 bits (777), Expect = e-101
Identities = 111/248 (44%), Positives = 161/248 (64%)
Query: 50 GTTHPIDRYRTTELLHFDSPSGNSLDSISDRDFIIEFLSHCSITIMHLSRISEEFIIFMN 109
GT + IDR + L F S + NSLDS+SDRD ++E LS SI+++HLSR +E+ I F +
Sbjct: 202 GTAYEIDREQLAGWLGFASATRNSLDSVSDRDHVLELLSDASISMVHLSRFAEDLIFFNS 261
Query: 110 PQFDYVSLPDSLLTGSSIMPQKKNPDILELIRGKTGRVYGNLFNMLTIMKSQPLAYNKDM 169
+ +V L D + +GSS+MPQKKNPD LELIRGK GRV G L ML +K PLAYNKDM
Sbjct: 262 GEAGFVELSDRVTSGSSLMPQKKNPDALELIRGKCGRVQGALTGMLMTLKGLPLAYNKDM 321
Query: 170 QECKQPLVDSIETLNMCLTAFKLILDNVKFNTGRMYVSAGEGFSIATDIADYLAKKKIPF 229
QE K+ L D+++T CL L+LD ++ R +A +G++ AT++ADYL K +PF
Sbjct: 322 QEDKEGLFDALDTWLDCLHMAALVLDGIQVKRPRCQEAAQQGYANATELADYLVAKGVPF 381
Query: 230 RSCHEIVGKIIKFCVQEAKPLDQLSLEELKAIHEDIGEDIFEILSVEKSVEHKDHVGATA 289
R H IVG+ + +++ KPL+ L L EL+ IG+D++ ILS++ ++ + G +
Sbjct: 382 REAHHIVGEAVVEAIRQGKPLEDLPLAELQKFSSVIGDDVYPILSLQSCLDKRAAKGGVS 441
Query: 290 PSQVQHSV 297
P QV ++
Sbjct: 442 PQQVAQAI 449
>gnl|CDD|215348 PLN02646, PLN02646, argininosuccinate lyase.
Length = 474
Score = 291 bits (746), Expect = 7e-96
Identities = 111/259 (42%), Positives = 165/259 (63%)
Query: 50 GTTHPIDRYRTTELLHFDSPSGNSLDSISDRDFIIEFLSHCSITIMHLSRISEEFIIFMN 109
GT PIDR+ T + L F +P NS+D++SDRDF++EFL SIT +HLSR+ EE++++ +
Sbjct: 216 GTGLPIDRFMTAKDLGFTAPMRNSIDAVSDRDFVLEFLFANSITAIHLSRLGEEWVLWAS 275
Query: 110 PQFDYVSLPDSLLTGSSIMPQKKNPDILELIRGKTGRVYGNLFNMLTIMKSQPLAYNKDM 169
+F +V+ D++ TGSSIMPQKKNPD +EL+RGK+ RV G+L +L + K P AYN+D+
Sbjct: 276 EEFGFVTPSDAVSTGSSIMPQKKNPDPMELVRGKSARVIGDLVTVLALCKGLPTAYNRDL 335
Query: 170 QECKQPLVDSIETLNMCLTAFKLILDNVKFNTGRMYVSAGEGFSIATDIADYLAKKKIPF 229
QE K+PL DS++T++ L N+ FN R+ S G AT +ADYL +K +PF
Sbjct: 336 QEDKEPLFDSVDTVSDMLEVATEFAQNITFNPERIKKSLPAGMLDATTLADYLVRKGVPF 395
Query: 230 RSCHEIVGKIIKFCVQEAKPLDQLSLEELKAIHEDIGEDIFEILSVEKSVEHKDHVGATA 289
R H IVG + + L L+LE+LK+I+ ED++E+L VE SVE D G+T
Sbjct: 396 RETHHIVGAAVALAESKGCELSDLTLEDLKSINPVFEEDVYEVLGVENSVEKFDSYGSTG 455
Query: 290 PSQVQHSVDVFENFVKDMT 308
V ++ + ++ +
Sbjct: 456 SRSVLEQLEKWRTKLEITS 474
>gnl|CDD|183425 PRK12308, PRK12308, bifunctional argininosuccinate
lyase/N-acetylglutamate synthase; Provisional.
Length = 614
Score = 264 bits (677), Expect = 5e-84
Identities = 112/249 (44%), Positives = 168/249 (67%)
Query: 50 GTTHPIDRYRTTELLHFDSPSGNSLDSISDRDFIIEFLSHCSITIMHLSRISEEFIIFMN 109
GT +PIDR L F + NSLDS+SDRD ++E +S SI+++HLSR++E+ I + +
Sbjct: 202 GTAYPIDREALAHNLGFRRATRNSLDSVSDRDHVMELMSVASISMLHLSRLAEDLIFYNS 261
Query: 110 PQFDYVSLPDSLLTGSSIMPQKKNPDILELIRGKTGRVYGNLFNMLTIMKSQPLAYNKDM 169
+ ++ L D++ +GSS+MPQKKNPD LELIRGKTGRVYG L M+ +K+ PLAYNKDM
Sbjct: 262 GESGFIELADTVTSGSSLMPQKKNPDALELIRGKTGRVYGALAGMMMTVKALPLAYNKDM 321
Query: 170 QECKQPLVDSIETLNMCLTAFKLILDNVKFNTGRMYVSAGEGFSIATDIADYLAKKKIPF 229
QE K+ L D+++T N C+ L D +K N R +A +G++ AT++ADYL K IPF
Sbjct: 322 QEDKEGLFDALDTWNDCMEMAALCFDGIKVNGERTLEAAKQGYANATELADYLVAKGIPF 381
Query: 230 RSCHEIVGKIIKFCVQEAKPLDQLSLEELKAIHEDIGEDIFEILSVEKSVEHKDHVGATA 289
R H IVG + + + L++LSLE+LK + I +D+++IL++E +E + +G +
Sbjct: 382 REAHHIVGVAVVGAIAKGCALEELSLEQLKEFSDVIEDDVYQILTIESCLEKRCALGGVS 441
Query: 290 PSQVQHSVD 298
P QV ++V+
Sbjct: 442 PEQVAYAVE 450
>gnl|CDD|176461 cd01334, Lyase_I, Lyase class I family; a group of proteins which
catalyze similar beta-elimination reactions. The Lyase
class I family contains class II fumarase, aspartase,
adenylosuccinate lyase (ASL), argininosuccinate lyase
(ASAL), prokaryotic-type 3-carboxy-cis,cis-muconate
cycloisomerase (pCMLE), and related proteins. It belongs
to the Lyase_I superfamily. Proteins of this family for
the most part catalyze similar beta-elimination
reactions in which a C-N or C-O bond is cleaved with the
release of fumarate as one of the products. These
proteins are active as tetramers. The four active sites
of the homotetrameric enzyme are each formed by residues
from three different subunits.
Length = 325
Score = 190 bits (484), Expect = 2e-58
Identities = 65/154 (42%), Positives = 91/154 (59%)
Query: 47 GGGGTTHPIDRYRTTELLHFDSPSGNSLDSISDRDFIIEFLSHCSITIMHLSRISEEFII 106
G G PIDR R ELL F P+ NS ++SDRDF++E LS ++ + LS+I+ + +
Sbjct: 172 GTGANAPPIDRERVAELLGFFGPAPNSTQAVSDRDFLVELLSALALLAVSLSKIANDLRL 231
Query: 107 FMNPQFDYVSLPDSLLTGSSIMPQKKNPDILELIRGKTGRVYGNLFNMLTIMKSQPLAYN 166
+ +F V LPD+ GSSIMPQK NP ILEL+RG GRV GNL +L +K PL N
Sbjct: 232 LSSGEFGEVELPDAKQPGSSIMPQKVNPVILELVRGLAGRVIGNLAALLEALKGGPLEDN 291
Query: 167 KDMQECKQPLVDSIETLNMCLTAFKLILDNVKFN 200
D ++ L DS + L+ L +L+ ++ N
Sbjct: 292 VDSPVEREALPDSFDLLDAALRLLTGVLEGLEVN 325
>gnl|CDD|235010 PRK02186, PRK02186, argininosuccinate lyase; Provisional.
Length = 887
Score = 137 bits (346), Expect = 4e-36
Identities = 69/209 (33%), Positives = 111/209 (53%), Gaps = 12/209 (5%)
Query: 48 GGGTTHPIDRYRTTELLHFDSPSGNSLDSISDRDFIIEFLSHCSITIMHLSRISEEFIIF 107
GGGTT PID LL F+ P+ NSLD+++ RD ++ FLS + LSR++++ ++
Sbjct: 607 GGGTTFPIDPEFVARLLGFEQPAPNSLDAVASRDGVLHFLSAMAAISTVLSRLAQDLQLW 666
Query: 108 MNPQFDYVSLPDSLLTGSSIMPQKKNPDILELIRGKTGRVYGNLFNMLTIMKSQPLAYNK 167
+F VSLPD+L GSS++PQKKNP +LE ++G+ G V G L + + P ++
Sbjct: 667 TTREFALVSLPDALTGGSSMLPQKKNPFLLEFVKGRAGVVAGALASASAALGKTP--FSN 724
Query: 168 DMQ---ECKQPLVDSIETLNMCLTAFKLILDNVKFNTGRMYVSAGEGFSIATDIADYLAK 224
+ P+ + + L++D ++ + RM +G AT +A+ L
Sbjct: 725 SFEAGSPMNGPIAQACAAIEDAAAVLVLLIDGLEADQARMRAHLEDGGVSATAVAESLVV 784
Query: 225 KK-IPFRSCHEIVGKIIKFCVQEAKPLDQ 252
++ I FRS H VG+ I + LDQ
Sbjct: 785 RRSISFRSAHTQVGQAI------RQSLDQ 807
>gnl|CDD|176466 cd01594, Lyase_I_like, Lyase class I_like superfamily: contains the
lyase class I family, histidine ammonia-lyase and
phenylalanine ammonia-lyase, which catalyze similar
beta-elimination reactions. Lyase class I_like
superfamily of enzymes that catalyze beta-elimination
reactions and are active as homotetramers. The four
active sites of the homotetrameric enzyme are each
formed by residues from three different subunits. This
superfamily contains the lyase class I family, histidine
ammonia-lyase and phenylalanine ammonia-lyase. The lyase
class I family comprises proteins similar to class II
fumarase, aspartase, adenylosuccinate lyase,
argininosuccinate lyase, and 3-carboxy-cis, cis-muconate
lactonizing enzyme which, for the most part catalyze
similar beta-elimination reactions in which a C-N or C-O
bond is cleaved with the release of fumarate as one of
the products. Histidine or phenylalanine ammonia-lyase
catalyze a beta-elimination of ammonia from histidine
and phenylalanine, respectively.
Length = 231
Score = 118 bits (299), Expect = 4e-32
Identities = 39/110 (35%), Positives = 57/110 (51%), Gaps = 1/110 (0%)
Query: 82 FIIEFLSHCSITIMHLSRISEEFIIFMNPQFDYVSLPDSLL-TGSSIMPQKKNPDILELI 140
+ E L ++ HLS+I+E+ + ++ +F + P GSSIMPQK NP EL+
Sbjct: 121 AVAEALDALALAAAHLSKIAEDLRLLLSGEFGELGEPFLPGQPGSSIMPQKVNPVAAELV 180
Query: 141 RGKTGRVYGNLFNMLTIMKSQPLAYNKDMQECKQPLVDSIETLNMCLTAF 190
RG G V GNL +LT +K P N+D ++ L DS+ L L
Sbjct: 181 RGLAGLVIGNLVAVLTALKGGPERDNEDSPSMREILADSLLLLIDALRLL 230
>gnl|CDD|215787 pfam00206, Lyase_1, Lyase.
Length = 312
Score = 93.6 bits (233), Expect = 6e-22
Identities = 43/120 (35%), Positives = 59/120 (49%), Gaps = 7/120 (5%)
Query: 34 GKSGGGSESGDENGGGGTTHPIDRYRTTELLHFDS---PSGNSLDSISDRDFIIEFLSHC 90
GGG+ G G EL F P+ NS ++ SDRD ++EF
Sbjct: 196 EPLGGGTAVGT---GLNADPEFAELLAKELGFFTGLPVPAPNSFEATSDRDAVVEFSGAL 252
Query: 91 SITIMHLSRISEEFIIFMNPQFDYVSLPDSLLT-GSSIMPQKKNPDILELIRGKTGRVYG 149
++ HLS+ + + + + F +V L GSSIMP K NPD LEL+RGK GRV+G
Sbjct: 253 ALLATHLSKFANDLRLLSSGPFGFVELSLPEGEPGSSIMPGKVNPDQLELLRGKAGRVFG 312
>gnl|CDD|180664 PRK06705, PRK06705, argininosuccinate lyase; Provisional.
Length = 502
Score = 87.7 bits (217), Expect = 2e-19
Identities = 62/217 (28%), Positives = 103/217 (47%), Gaps = 16/217 (7%)
Query: 51 TTHPIDRYRTTELLHFDSPSGNSLDSISDRDFIIEFLSHCSITIMHLSRISEEFIIFMNP 110
T+ PI R R +LL F + NS D+++ D+++E S + + + SR +F++
Sbjct: 210 TSFPIKRERVADLLGFTNVIENSYDAVAGADYLLEVSSLLMVMMTNTSRWIHDFLLLATK 269
Query: 111 QFDYVSLPDSLLTGSSIMPQKKNPDILELIRGKTGRVYGNLFNMLTIMKSQPLAYNKDMQ 170
++D +++ + SSIMPQK+NP +E R T G F + ++ + P D +
Sbjct: 270 EYDGITVARPYVQISSIMPQKRNPVSIEHARAITSSALGEAFTVFQMIHNTPFGDIVDTE 329
Query: 171 ECKQP-LVDSIE-------TLNMCLTAFKLILDNVKFNTGRMYVSAGEGFSIATDIADYL 222
+ QP L IE +N + K+ D +K R Y A +I TD AD L
Sbjct: 330 DDLQPYLYKGIEKAIRVFCIMNAVIRTMKVEEDTLK---RRSYKHA---ITI-TDFADVL 382
Query: 223 AKK-KIPFRSCHEIVGKIIKFCVQEAKPLDQLSLEEL 258
K IPFR H I +++ K L +L +++
Sbjct: 383 TKNYGIPFRHAHHAASVIANMSLEQKKELHELCFKDV 419
>gnl|CDD|235791 PRK06389, PRK06389, argininosuccinate lyase; Provisional.
Length = 434
Score = 76.1 bits (187), Expect = 2e-15
Identities = 61/240 (25%), Positives = 103/240 (42%), Gaps = 12/240 (5%)
Query: 48 GGGTTHPIDRYRTTELLHFDSPSGNSLDSISDRDFIIEFLSHCSITI-MHLSRISEEFII 106
G G+ + + +ELL + N + S S IE +S+ ++ + LSRI ++ II
Sbjct: 194 GYGSPSSVKFNQMSELLGMEKNIKNPVYSSSLYIKTIENISYLISSLAVDLSRICQDIII 253
Query: 107 FMNPQFDYVSLPDSLLTGSSIMPQKKNPDILELIRGKTGRVYGNLFNMLTIMKSQPLAYN 166
+ +++PD TGSS+MP K+NPD LEL +G L + ++ Y+
Sbjct: 254 YYEN--GIITIPDEFTTGSSLMPNKRNPDYLELFQGIAAESISVLSFIAQSELNKTTGYH 311
Query: 167 KDMQECKQPLVDSIETLNMCLTAFKLILDNVKFN-TGRMYVSAGEGFSIATDIADYLAKK 225
+D Q K + I L +L N+KF T + + AT A K
Sbjct: 312 RDFQIVKDSTISFINNFERILLGLPDLLYNIKFEITNEKNI---KNSVYATYNAWLAFKN 368
Query: 226 KIPFRSCHEIVGKIIKFC-----VQEAKPLDQLSLEELKAIHEDIGEDIFEILSVEKSVE 280
+ ++S + +G I+ Q D + + ELK I+ +I I + + E
Sbjct: 369 GMDWKSAYAYIGNKIREGEVLDEYQPEDLTDYIDVNELKRINHNIKIIIEPREKLIEYAE 428
>gnl|CDD|176467 cd01595, Adenylsuccinate_lyase_like, Adenylsuccinate lyase
(ASL)_like. This group contains ASL, prokaryotic-type
3-carboxy-cis,cis-muconate cycloisomerase (pCMLE), and
related proteins. These proteins are members of the
Lyase class I family. Members of this family for the
most part catalyze similar beta-elimination reactions in
which a C-N or C-O bond is cleaved with the release of
fumarate as one of the products. These proteins are
active as tetramers. The four active sites of the
homotetrameric enzyme are each formed by residues from
three different subunits. ASL catalyzes two steps in the
de novo purine biosynthesis: the conversion of
5-aminoimidazole-(N-succinylocarboxamide) ribotide
(SAICAR) into 5-aminoimidazole-4-carboxamide ribotide
(AICAR) and; the conversion of adenylsuccinate (SAMP)
into adenosine monophosphate (AMP). pCMLE catalyzes the
cyclization of 3-carboxy-cis,cis-muconate (3CM) to
4-carboxy-muconolactone, in the beta-ketoadipate
pathway. ASL deficiency has been linked to several
pathologies including psychomotor retardation with
autistic features, epilepsy and muscle wasting.
Length = 381
Score = 52.1 bits (126), Expect = 1e-07
Identities = 23/85 (27%), Positives = 34/85 (40%), Gaps = 5/85 (5%)
Query: 77 ISDRDFIIEFLSHCSI--TIMHLSRISEEFIIFMNPQFDYVSLP-DSLLTGSSIMPQKKN 133
I RD I E LS ++ + +I+ + + + V P + GSS MP K+N
Sbjct: 211 IEPRDRIAELLSALALIAGTLE--KIATDIRLLQRTEIGEVEEPFEKGQVGSSTMPHKRN 268
Query: 134 PDILELIRGKTGRVYGNLFNMLTIM 158
P E I G V L +
Sbjct: 269 PIDSENIEGLARLVRALAAPALENL 293
>gnl|CDD|176469 cd01597, pCLME, prokaryotic 3-carboxy-cis,cis-muconate
cycloisomerase (CMLE)_like. This subgroup contains
pCLME and related proteins, and belongs to the Lyase
class I family. Members of this family for the most part
catalyze similar beta-elimination reactions in which a
C-N or C-O bond is cleaved with the release of fumarate
as one of the products. These proteins are active as
tetramers. The four active sites of the homotetrameric
enzyme are each formed by residues from three different
subunits. CMLE catalyzes the cyclization of
3-carboxy-cis,cis-muconate (3CM) to
4-carboxy-muconolactone in the beta-ketoadipate pathway.
This pathway is responsible for the catabolism of a
variety of aromatic compounds into intermediates of the
citric cycle in prokaryotic and eukaryotic
micro-organisms.
Length = 437
Score = 47.6 bits (114), Expect = 4e-06
Identities = 26/82 (31%), Positives = 38/82 (46%), Gaps = 1/82 (1%)
Query: 78 SDRDFIIEFLSHCSITIMHLSRISEEFIIFMNPQFDYVSLPDSLLTG-SSIMPQKKNPDI 136
+ RD I E S ++ L +I+ + + M + V+ P + G SS MP K+NP
Sbjct: 221 TARDRIAELASFLALLTGTLGKIARDVYLLMQTEIGEVAEPFAKGRGGSSTMPHKRNPVG 280
Query: 137 LELIRGKTGRVYGNLFNMLTIM 158
ELI RV G +L M
Sbjct: 281 CELIVALARRVPGLAALLLDAM 302
>gnl|CDD|223958 COG1027, AspA, Aspartate ammonia-lyase [Amino acid transport and
metabolism].
Length = 471
Score = 47.3 bits (113), Expect = 6e-06
Identities = 43/159 (27%), Positives = 62/159 (38%), Gaps = 22/159 (13%)
Query: 124 GSSIMPQKKNPDILELIRGKTGRVYGNLFNMLTI-MKSQP--LAYNKDMQECKQPLVDSI 180
GSSIMP K NP I E++ +V G N TI M ++ L N L +SI
Sbjct: 318 GSSIMPGKVNPVIPEVVNQVCFKVIG---NDTTITMAAEAGQLQLNVMEPVIAYALFESI 374
Query: 181 ETLNMCLTAF--KLILDNVKFNTGRMYVSAGEGFSIATDIADYLAKKKIPFRSCHEIVGK 238
L K I D + N R I T + Y+ +E
Sbjct: 375 SILTNACRNLREKCI-DGITANEERCEEYVENSIGIVTALNPYIG---------YENAAI 424
Query: 239 IIKFCVQEAKPLDQLSLEELKAIHEDIGEDIFEILSVEK 277
I K ++ K + ++ LE + E E++ +ILS E
Sbjct: 425 IAKEALETGKSVREVVLER-GLLTE---EELDDILSPEN 459
>gnl|CDD|223094 COG0015, PurB, Adenylosuccinate lyase [Nucleotide transport and
metabolism].
Length = 438
Score = 44.9 bits (107), Expect = 3e-05
Identities = 43/203 (21%), Positives = 84/203 (41%), Gaps = 9/203 (4%)
Query: 77 ISDRDFIIEFLSHCSITIMHLSRISEEFIIFMNPQFDYVSLP-DSLLTGSSIMPQKKNPD 135
+S RD I EF S ++ L + + + + + V P GSS MP K+NP
Sbjct: 220 VSPRDRIAEFFSALALLAGSLEKFARDIRLLQRTEVGEVEEPFAKGQVGSSAMPHKRNPI 279
Query: 136 ILELIRGKTGRVYGNLFNMLTIMKSQPLAYNKDMQE--CKQP-LVDSIETLNMCLTAFKL 192
E + G + T++++ L + +D+ + ++ L D+ + L
Sbjct: 280 DSENVTGLARVARA---LVSTLLENLVLWHERDLTDSSVERVILPDAFIAADGALNRLLN 336
Query: 193 ILDNVKFNTGRM--YVSAGEGFSIATDIADYLAKKKIPFRSCHEIVGKIIKFCVQEAKPL 250
+L+ ++ N RM + G + + L KK + HE+V + ++ K
Sbjct: 337 VLEGLEVNPERMRRNLDLTLGLIASERVMLALRKKGMGREEAHELVREKAMKAWEQGKEF 396
Query: 251 DQLSLEELKAIHEDIGEDIFEIL 273
+L L + + E++ E+L
Sbjct: 397 LELLLADERVTKYLSEEELLELL 419
>gnl|CDD|235782 PRK06341, PRK06341, single-stranded DNA-binding protein;
Provisional.
Length = 166
Score = 38.6 bits (90), Expect = 0.001
Identities = 21/46 (45%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Query: 11 RPTGGGGGESGDGGESGDGGKSEGKSGGGSESGDENGGGGTTHPID 56
R GGGGG GD G GD G S G S GG GGG + +D
Sbjct: 117 RGEGGGGGGGGDDGGGGDFGSS-GPSRGGPRPASSGGGGNFSRDMD 161
>gnl|CDD|180777 PRK06958, PRK06958, single-stranded DNA-binding protein;
Provisional.
Length = 182
Score = 37.9 bits (88), Expect = 0.002
Identities = 20/37 (54%), Positives = 21/37 (56%), Gaps = 3/37 (8%)
Query: 14 GGGGGESGDGGESGDGGKSEGKSGGGSESGDENGGGG 50
GGGGG +GG G GG G GG S SG GGGG
Sbjct: 115 GGGGGGGDEGGYGGGGGGGGGGYGGESRSG---GGGG 148
Score = 36.3 bits (84), Expect = 0.010
Identities = 17/37 (45%), Positives = 18/37 (48%)
Query: 14 GGGGGESGDGGESGDGGKSEGKSGGGSESGDENGGGG 50
G GG G GG G G E +SGGG GGGG
Sbjct: 121 GDEGGYGGGGGGGGGGYGGESRSGGGGGRASGGGGGG 157
Score = 35.9 bits (83), Expect = 0.013
Identities = 17/38 (44%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
Query: 14 GGGGGESGDGGESGDGGKSEGKSG-GGSESGDENGGGG 50
GG GG G GG +GG G G GG G+ GGG
Sbjct: 109 GGRGGSGGGGGGGDEGGYGGGGGGGGGGYGGESRSGGG 146
Score = 34.4 bits (79), Expect = 0.040
Identities = 19/37 (51%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
Query: 14 GGGGGESGDGGESGDGGKSEGKSGGGSESGDENGGGG 50
G GGG G GG G GG+S GGG SG GG G
Sbjct: 125 GYGGGGGGGGG--GYGGESRSGGGGGRASGGGGGGAG 159
Score = 31.3 bits (71), Expect = 0.44
Identities = 17/37 (45%), Positives = 17/37 (45%), Gaps = 3/37 (8%)
Query: 15 GGGGESGDGGESGDGGKSEGKSGGGSESGDENGGGGT 51
GG G SG GG GD G G GGG G GG
Sbjct: 109 GGRGGSGGGGGGGDEG---GYGGGGGGGGGGYGGESR 142
>gnl|CDD|164795 PHA00370, III, attachment protein.
Length = 297
Score = 38.4 bits (89), Expect = 0.003
Identities = 16/38 (42%), Positives = 17/38 (44%)
Query: 14 GGGGGESGDGGESGDGGKSEGKSGGGSESGDENGGGGT 51
GG GD G GG S G GGS G +GGG
Sbjct: 91 EGGSDTGGDTGGGNTGGGSGGGDTGGSGGGGSDGGGSE 128
Score = 38.0 bits (88), Expect = 0.004
Identities = 20/55 (36%), Positives = 24/55 (43%), Gaps = 9/55 (16%)
Query: 7 WKTIR---PTGGGGGESGDGGESGD---GGKSEGKSGGGSESGDENG---GGGTT 52
WK G GGG G ++G GG + G SGGG G G GGG+
Sbjct: 74 WKPTGSADKDGDGGGTGEGGSDTGGDTGGGNTGGGSGGGDTGGSGGGGSDGGGSE 128
Score = 35.3 bits (81), Expect = 0.026
Identities = 19/42 (45%), Positives = 20/42 (47%), Gaps = 4/42 (9%)
Query: 13 TGG--GGGESGDGGESGDGGKSEG--KSGGGSESGDENGGGG 50
TGG GGG +G G GD G S G GGGSE G
Sbjct: 96 TGGDTGGGNTGGGSGGGDTGGSGGGGSDGGGSEGGSTGKSLT 137
Score = 35.3 bits (81), Expect = 0.027
Identities = 14/39 (35%), Positives = 15/39 (38%)
Query: 13 TGGGGGESGDGGESGDGGKSEGKSGGGSESGDENGGGGT 51
TGGG G GG G G G GG + G G
Sbjct: 105 TGGGSGGGDTGGSGGGGSDGGGSEGGSTGKSLTKEGVGA 143
Score = 34.9 bits (80), Expect = 0.042
Identities = 17/42 (40%), Positives = 17/42 (40%)
Query: 15 GGGGESGDGGESGDGGKSEGKSGGGSESGDENGGGGTTHPID 56
GGG GD G SG GG G S GGS G D
Sbjct: 106 GGGSGGGDTGGSGGGGSDGGGSEGGSTGKSLTKEGVGAGDFD 147
Score = 34.5 bits (79), Expect = 0.061
Identities = 18/37 (48%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
Query: 13 TGGGGGESGDGGESGDGGKSEGKSGGGSESGDENGGG 49
GG G SG GG DGG SEG S G S + + G G
Sbjct: 110 GGGDTGGSGGGGS--DGGGSEGGSTGKSLTKEGVGAG 144
Score = 31.0 bits (70), Expect = 0.63
Identities = 13/32 (40%), Positives = 16/32 (50%)
Query: 13 TGGGGGESGDGGESGDGGKSEGKSGGGSESGD 44
TGG GG DGG S G + + G +GD
Sbjct: 114 TGGSGGGGSDGGGSEGGSTGKSLTKEGVGAGD 145
>gnl|CDD|176462 cd01357, Aspartase, Aspartase. This subgroup contains Escherichia
coli aspartase (L-aspartate ammonia-lyase), Bacillus
aspartase and related proteins. It is a member of the
Lyase class I family, which includes both aspartase
(L-aspartate ammonia-lyase) and fumarase class II
enzymes. Members of this family for the most part
catalyze similar beta-elimination reactions in which a
C-N or C-O bond is cleaved with the release of fumarate
as one of the products. These proteins are active as
tetramers. The four active sites of the homotetrameric
enzyme are each formed by residues from three different
subunits. Aspartase catalyzes the reversible deamination
of aspartic acid.
Length = 450
Score = 36.7 bits (86), Expect = 0.014
Identities = 41/147 (27%), Positives = 62/147 (42%), Gaps = 34/147 (23%)
Query: 124 GSSIMPQKKNPDILELIRGKTGRVYGNLFNMLTI-MKSQ----------PL-AYNKDMQE 171
GSSIMP K NP I E++ +V G N LTI M ++ P+ AYN
Sbjct: 312 GSSIMPGKVNPVIPEVVNQVAFQVIG---NDLTITMAAEAGQLELNVFEPVIAYN----- 363
Query: 172 CKQPLVDSIETL-NMCLTAFKLILDNVKFNTGRMYVSAGEGFSIATDIADYLAKKKIPFR 230
L++SI+ L N T + +D + N R I T + Y+
Sbjct: 364 ----LLESIDILTNAVRTLRERCIDGITANEERCREYVENSIGIVTALNPYIG------- 412
Query: 231 SCHEIVGKIIKFCVQEAKPLDQLSLEE 257
+E +I K ++ + + +L LEE
Sbjct: 413 --YEAAAEIAKEALETGRSVRELVLEE 437
>gnl|CDD|233192 TIGR00928, purB, adenylosuccinate lyase. This family consists of
adenylosuccinate lyase, the enzyme that catalyzes step 8
in the purine biosynthesis pathway for de novo synthesis
of IMP and also the final reaction in the two-step
sequence from IMP to AMP [Purines, pyrimidines,
nucleosides, and nucleotides, Purine ribonucleotide
biosynthesis].
Length = 435
Score = 36.6 bits (85), Expect = 0.014
Identities = 40/181 (22%), Positives = 72/181 (39%), Gaps = 24/181 (13%)
Query: 123 TGSSIMPQKKNPDILELIRGKTGRVYGNLFNMLTIMKSQPLAYNKDMQEC---KQPLVDS 179
GSS MP K+NP E + G + + +++ PL + +D+ + + L DS
Sbjct: 266 VGSSAMPHKRNPIDFENVCGLARVIRS---VLSPALENVPLWHERDLTDSSVERIILPDS 322
Query: 180 IETLNMCLTAFKLILDNVKFNTG----RMYVSAGEGFSIATDIADYLAKKKIPFRSCHEI 235
++ L ++ + N + ++ G S IA L ++ + +EI
Sbjct: 323 FILADIMLKTTLKVVKKLVVNPENILRNLELTLGLIASERVLIA--LVERGMGREEAYEI 380
Query: 236 VGKIIKFCVQEAKPLDQLSLEELKAIHEDIGEDIFEILSVEKSVEHKD---HVGATAPSQ 292
V + A +D+ L E + D E I + L E+ E D ++G A
Sbjct: 381 V----RELAMGAAEVDEPDLLEF--LLAD--ERITKYLKEEELAELLDPETYIGN-AREI 431
Query: 293 V 293
V
Sbjct: 432 V 432
>gnl|CDD|140324 PTZ00303, PTZ00303, phosphatidylinositol kinase; Provisional.
Length = 1374
Score = 36.6 bits (84), Expect = 0.019
Identities = 22/75 (29%), Positives = 34/75 (45%), Gaps = 7/75 (9%)
Query: 10 IRPTGG-GGGESGDGGESG----DGGKSEGKSGGGSESGDENGGGGTTHPIDRYRTTELL 64
RP+ GG + G +G G + GK GG + + GG + ++ + T+LL
Sbjct: 389 GRPSSSIGGNANSSTGGNGAAGAGGAGAAGKGGGSAAARATVGGVAEENELNTFGLTKLL 448
Query: 65 HFDSPSGNSLDSISD 79
H +PS D SD
Sbjct: 449 H--NPSWQKDDESSD 461
>gnl|CDD|213564 TIGR00839, aspA, aspartate ammonia-lyase. This enzyme, aspartate
ammonia-lyase, shows local homology to a number of other
lyases, as modeled by Pfam model pfam00206. Fumarate
hydratase scores as high as 570 bits against this model
[Energy metabolism, Amino acids and amines].
Length = 468
Score = 36.3 bits (84), Expect = 0.019
Identities = 48/210 (22%), Positives = 88/210 (41%), Gaps = 23/210 (10%)
Query: 69 PSGNSLDSISDRDFIIEFLSHCSITIMHLSRISEEF-IIFMNPQ--FDYVSLPDSLLTGS 125
P+ N +++ SD + + +S+I + ++ P+ + ++LP+ L GS
Sbjct: 258 PAENLIEATSDCGAYVMVHGALKRLAVKMSKICNDLRLLSSGPRAGLNEINLPE-LQAGS 316
Query: 126 SIMPQKKNPDILELIRGKTGRVYGNLFNMLTIMKSQPLAYNKDMQECKQPLVDSIETL-N 184
SIMP K NP + E++ +V GN + ++ L N Q + +SI L N
Sbjct: 317 SIMPAKVNPVVPEVVNQVCFKVIGNDTTVTLAAEAGQLQLNVMEPVIGQAMFESIHILTN 376
Query: 185 MCLTAFKLILDNVKFNTGRM--YV--SAGEGFSIATDIADYLAKKKIPFRSCHEIVGKII 240
C ++ + N YV S G I T + ++ H +
Sbjct: 377 ACYNLTDKCVNGITANKEICEGYVFNSIG----IVTYLNPFIG---------HHNGDIVG 423
Query: 241 KFCVQEAKPLDQLSLEELKAIHEDIGEDIF 270
K C + K + ++ LE+ + E+ +DIF
Sbjct: 424 KICAETGKSVREVVLEK-GLLTEEELDDIF 452
>gnl|CDD|221784 pfam12810, Gly_rich, Glycine rich protein. This family of proteins
is greatly expanded in Trichomonas vaginalis. The
proteins are composed of several glycine rich motifs
interspersed through the sequence. Although many
proteins have been annotated by similarity in the family
these annotations given the biased composition of the
sequences these are unlikely to be functionally
relevant.
Length = 248
Score = 35.3 bits (82), Expect = 0.023
Identities = 18/39 (46%), Positives = 20/39 (51%), Gaps = 3/39 (7%)
Query: 14 GGGGGESGDGGESGDGGKSEGKSGGGSESGDENGGGGTT 52
GGGG + +GG G GG G GGG S N GGT
Sbjct: 113 GGGGSGNYNGGSGGFGG---GLVGGGGTSNGNNSTGGTQ 148
>gnl|CDD|183992 PRK13353, PRK13353, aspartate ammonia-lyase; Provisional.
Length = 473
Score = 35.7 bits (83), Expect = 0.024
Identities = 34/138 (24%), Positives = 58/138 (42%), Gaps = 16/138 (11%)
Query: 124 GSSIMPQKKNPDILELIRGKTGRVYGNLFNMLTI-MKSQ--PLAYNKDMQECKQPLVDSI 180
GSSIMP K NP + E++ +V G N +TI + ++ L N L++SI
Sbjct: 317 GSSIMPGKVNPVMPEVVNQIAFQVIG---NDVTITLAAEAGQLELNVMEPVIAFNLLESI 373
Query: 181 ETLNMCLTAFKL-ILDNVKFNTGRMYVSAGEGFSIATDIADYLAKKKIPFRSCHEIVGKI 239
L AF + ++ N R + IAT + ++ +E +I
Sbjct: 374 SILTNACRAFTDNCVKGIEANEERCKEYVEKSVGIATALNPHIG---------YEAAARI 424
Query: 240 IKFCVQEAKPLDQLSLEE 257
K + + + +L+LE
Sbjct: 425 AKEAIATGRSVRELALEN 442
>gnl|CDD|237031 PRK12273, aspA, aspartate ammonia-lyase; Provisional.
Length = 472
Score = 35.1 bits (82), Expect = 0.038
Identities = 50/173 (28%), Positives = 72/173 (41%), Gaps = 50/173 (28%)
Query: 124 GSSIMPQKKNPDILELIRGKTGRVYGNLFNMLTI-MKSQ----------PL-AYNKDMQE 171
GSSIMP K NP I E++ +V G N T+ M ++ P+ AYN
Sbjct: 319 GSSIMPGKVNPVIPEVVNQVCFQVIG---NDTTVTMAAEAGQLELNVMEPVIAYN----- 370
Query: 172 CKQPLVDSIETL-NMCLTAFKLILDNVKFNTGRM--YV--SAGEGFSIATDIADYLAKKK 226
L +SI L N C T + +D + N R YV S G I T + Y+
Sbjct: 371 ----LFESISILTNACRTLREKCIDGITANEERCREYVENSIG----IVTALNPYIG--- 419
Query: 227 IPFRSCHEIVGKIIKFCVQEAKPLDQLSLEE--LKAIHEDIGEDIFEILSVEK 277
+E +I K ++ K + +L LE L E++ +ILS E
Sbjct: 420 ------YENAAEIAKEALETGKSVRELVLERGLLTE------EELDDILSPEN 460
>gnl|CDD|240291 PTZ00146, PTZ00146, fibrillarin; Provisional.
Length = 293
Score = 35.1 bits (81), Expect = 0.038
Identities = 18/37 (48%), Positives = 19/37 (51%)
Query: 14 GGGGGESGDGGESGDGGKSEGKSGGGSESGDENGGGG 50
GGGGG G GG G G G+ GG G GGGG
Sbjct: 16 GGGGGGRGGGGRGGGRGGGRGRGRGGGGGGRGGGGGG 52
Score = 34.7 bits (80), Expect = 0.043
Identities = 18/40 (45%), Positives = 18/40 (45%)
Query: 11 RPTGGGGGESGDGGESGDGGKSEGKSGGGSESGDENGGGG 50
G GGG G GG GG G GGG G GGGG
Sbjct: 6 FGGGRGGGRGGGGGGGRGGGGRGGGRGGGRGRGRGGGGGG 45
Score = 33.6 bits (77), Expect = 0.097
Identities = 16/37 (43%), Positives = 16/37 (43%)
Query: 14 GGGGGESGDGGESGDGGKSEGKSGGGSESGDENGGGG 50
GGGGG GG G G G G G GGGG
Sbjct: 15 GGGGGGGRGGGGRGGGRGGGRGRGRGGGGGGRGGGGG 51
Score = 33.6 bits (77), Expect = 0.11
Identities = 15/37 (40%), Positives = 15/37 (40%)
Query: 14 GGGGGESGDGGESGDGGKSEGKSGGGSESGDENGGGG 50
GG GG G G G GG G GG G G G
Sbjct: 4 GGFGGGRGGGRGGGGGGGRGGGGRGGGRGGGRGRGRG 40
Score = 33.6 bits (77), Expect = 0.11
Identities = 14/37 (37%), Positives = 14/37 (37%)
Query: 14 GGGGGESGDGGESGDGGKSEGKSGGGSESGDENGGGG 50
GG GG G G G G G G G G GG
Sbjct: 12 GGRGGGGGGGRGGGGRGGGRGGGRGRGRGGGGGGRGG 48
Score = 33.2 bits (76), Expect = 0.16
Identities = 16/37 (43%), Positives = 16/37 (43%)
Query: 14 GGGGGESGDGGESGDGGKSEGKSGGGSESGDENGGGG 50
G GGG G G G GG G G G G GGG
Sbjct: 13 GRGGGGGGGRGGGGRGGGRGGGRGRGRGGGGGGRGGG 49
Score = 32.8 bits (75), Expect = 0.20
Identities = 17/37 (45%), Positives = 18/37 (48%)
Query: 14 GGGGGESGDGGESGDGGKSEGKSGGGSESGDENGGGG 50
G GGG G G G GG+ G GGG G G GG
Sbjct: 5 GFGGGRGGGRGGGGGGGRGGGGRGGGRGGGRGRGRGG 41
Score = 32.4 bits (74), Expect = 0.27
Identities = 16/37 (43%), Positives = 18/37 (48%)
Query: 14 GGGGGESGDGGESGDGGKSEGKSGGGSESGDENGGGG 50
GGGG G G GG+ G+ GGG G GGG
Sbjct: 18 GGGGRGGGGRGGGRGGGRGRGRGGGGGGRGGGGGGGP 54
Score = 31.6 bits (72), Expect = 0.40
Identities = 15/37 (40%), Positives = 15/37 (40%)
Query: 14 GGGGGESGDGGESGDGGKSEGKSGGGSESGDENGGGG 50
GGG G GG G GG G G G G G G
Sbjct: 3 GGGFGGGRGGGRGGGGGGGRGGGGRGGGRGGGRGRGR 39
Score = 31.2 bits (71), Expect = 0.53
Identities = 17/37 (45%), Positives = 17/37 (45%), Gaps = 2/37 (5%)
Query: 14 GGGGGESGDGGESGDGGKSEGKSGGGSESGDENGGGG 50
GGG G GG G GG G GGG G GG G
Sbjct: 2 MGGGFGGGRGG--GRGGGGGGGRGGGGRGGGRGGGRG 36
Score = 31.2 bits (71), Expect = 0.63
Identities = 15/45 (33%), Positives = 17/45 (37%)
Query: 6 KWKTIRPTGGGGGESGDGGESGDGGKSEGKSGGGSESGDENGGGG 50
GGG G GG G GG+ G+ GG GGG
Sbjct: 2 MGGGFGGGRGGGRGGGGGGGRGGGGRGGGRGGGRGRGRGGGGGGR 46
Score = 31.2 bits (71), Expect = 0.63
Identities = 16/37 (43%), Positives = 18/37 (48%)
Query: 14 GGGGGESGDGGESGDGGKSEGKSGGGSESGDENGGGG 50
GGGG G GG GG+ G+ G G GGGG
Sbjct: 14 RGGGGGGGRGGGGRGGGRGGGRGRGRGGGGGGRGGGG 50
Score = 30.9 bits (70), Expect = 0.84
Identities = 15/37 (40%), Positives = 15/37 (40%)
Query: 14 GGGGGESGDGGESGDGGKSEGKSGGGSESGDENGGGG 50
GGG G G GG G G G G G GG G
Sbjct: 11 GGGRGGGGGGGRGGGGRGGGRGGGRGRGRGGGGGGRG 47
Score = 29.3 bits (66), Expect = 2.5
Identities = 14/29 (48%), Positives = 15/29 (51%)
Query: 11 RPTGGGGGESGDGGESGDGGKSEGKSGGG 39
R GG GG G G G GG G+ GGG
Sbjct: 22 RGGGGRGGGRGGGRGRGRGGGGGGRGGGG 50
Score = 28.5 bits (64), Expect = 4.8
Identities = 15/41 (36%), Positives = 16/41 (39%)
Query: 11 RPTGGGGGESGDGGESGDGGKSEGKSGGGSESGDENGGGGT 51
GG GG GG G G+ G GGG G G G
Sbjct: 17 GGGGGRGGGGRGGGRGGGRGRGRGGGGGGRGGGGGGGPGKV 57
>gnl|CDD|112890 pfam04094, DUF390, Protein of unknown function (DUF390). This is a
family of long proteins currently only found in the rice
genome. They have no known function. However they may be
some kind of transposable element.
Length = 843
Score = 35.2 bits (80), Expect = 0.044
Identities = 19/51 (37%), Positives = 22/51 (43%), Gaps = 3/51 (5%)
Query: 9 TIRPTGGGGGESGDGGESGDGGKSEGKS---GGGSESGDENGGGGTTHPID 56
TI G E G G GG G+ GGG SG +GG G + P D
Sbjct: 52 TIMMAVGASEERALKGHDGAGGSRRGEQSTPGGGRASGPRDGGPGGSRPAD 102
>gnl|CDD|236352 PRK08937, PRK08937, adenylosuccinate lyase; Provisional.
Length = 216
Score = 34.2 bits (79), Expect = 0.057
Identities = 41/183 (22%), Positives = 71/183 (38%), Gaps = 22/183 (12%)
Query: 97 LSRISEEFIIFMNPQFDYVSLPDSL-LTGSSIMPQKKNPDILELIRGKTGRVYGNLFNML 155
L + + E + + V P + GSS MP K+NP E I G + L +
Sbjct: 30 LEKFANEIRLLQRSEIREVEEPFAKGQKGSSAMPHKRNPIGSERITGLARVLRSYL---V 86
Query: 156 TIMKSQPLAYNKDMQECKQP----LVDSIETLNMCLTAFKLILDNVKFNTGRMYVSAGE- 210
T +++ PL + +D+ L D+ L+ L F IL+N+ + + +
Sbjct: 87 TALENVPLWHERDL-SHSSAERIALPDAFLALDYILNRFVNILENLVVFPENIERNLDKT 145
Query: 211 -GFSIATDIADYLAKKKIPFRSCHEIVGKIIKFCVQEAKPL-----------DQLSLEEL 258
GF + L +K + HE++ + + K L QL+ EEL
Sbjct: 146 LGFIATERVLLELVEKGMGREEAHELIREKAMEAWKNQKDLRELLEADERFTKQLTKEEL 205
Query: 259 KAI 261
+
Sbjct: 206 DEL 208
>gnl|CDD|173502 PTZ00266, PTZ00266, NIMA-related protein kinase; Provisional.
Length = 1021
Score = 34.3 bits (78), Expect = 0.086
Identities = 20/40 (50%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
Query: 12 PTGGGGGESGDGGESGDGGKS--EGKSGGGSESGDENGGG 49
G G GDGG S DGG+S G+S G E GDE GG
Sbjct: 806 HAHSGSGRGGDGGRSIDGGRSIDGGRSIDGGEGGDERDGG 845
>gnl|CDD|223003 PHA03169, PHA03169, hypothetical protein; Provisional.
Length = 413
Score = 34.2 bits (78), Expect = 0.087
Identities = 11/43 (25%), Positives = 12/43 (27%)
Query: 8 KTIRPTGGGGGESGDGGESGDGGKSEGKSGGGSESGDENGGGG 50
K R GG G + S S S EN G
Sbjct: 84 KEERGQGGPSGSGSESVGSPTPSPSGSAEELASGLSPENTSGS 126
Score = 31.9 bits (72), Expect = 0.45
Identities = 9/37 (24%), Positives = 10/37 (27%)
Query: 14 GGGGGESGDGGESGDGGKSEGKSGGGSESGDENGGGG 50
SG E G E SG ES +
Sbjct: 102 SPTPSPSGSAEELASGLSPENTSGSSPESPASHSPPP 138
Score = 30.7 bits (69), Expect = 1.1
Identities = 13/37 (35%), Positives = 16/37 (43%), Gaps = 1/37 (2%)
Query: 15 GGGGESGDGGESGDGGKS-EGKSGGGSESGDENGGGG 50
G E G GG SG G +S + S S +E G
Sbjct: 82 GEKEERGQGGPSGSGSESVGSPTPSPSGSAEELASGL 118
Score = 29.9 bits (67), Expect = 1.5
Identities = 3/42 (7%), Positives = 8/42 (19%)
Query: 12 PTGGGGGESGDGGESGDGGKSEGKSGGGSESGDENGGGGTTH 53
+ + + E + G G +
Sbjct: 213 EPQSPTPQQAPSPNTQQAVEHEDEPTEPEREGPPFPGHRSHS 254
Score = 29.2 bits (65), Expect = 3.5
Identities = 5/48 (10%), Positives = 9/48 (18%), Gaps = 7/48 (14%)
Query: 12 PTGGGGGES---GDGGESGDGGKSEGKSGG----GSESGDENGGGGTT 52
P G +S G+ + S +
Sbjct: 187 PDSPGPPQSETPTSSPPPQSPPDEPGEPQSPTPQQAPSPNTQQAVEHE 234
>gnl|CDD|226808 COG4371, COG4371, Predicted membrane protein [Function unknown].
Length = 334
Score = 33.7 bits (77), Expect = 0.088
Identities = 16/47 (34%), Positives = 16/47 (34%)
Query: 9 TIRPTGGGGGESGDGGESGDGGKSEGKSGGGSESGDENGGGGTTHPI 55
R G GG S G S G GG SG GGG P
Sbjct: 46 AARSGGRIGGGSFRAPSGYSRGYSGGGPSGGGYSGGGYSGGGFGFPF 92
>gnl|CDD|221518 pfam12301, CD99L2, CD99 antigen like protein 2. This family of
proteins is found in eukaryotes. Proteins in this family
are typically between 165 and 237 amino acids in length.
CD99L2 and CD99 are involved in trans-endothelial
migration of neutrophils in vitro and in the recruitment
of neutrophils into inflamed peritoneum.
Length = 154
Score = 32.8 bits (75), Expect = 0.11
Identities = 20/49 (40%), Positives = 20/49 (40%), Gaps = 8/49 (16%)
Query: 11 RPTGGGGGES--------GDGGESGDGGKSEGKSGGGSESGDENGGGGT 51
P G GGG S GDGG D GK G GGG D GG
Sbjct: 60 NPGGDGGGFSDSDLADVAGDGGYKPDKGKGGGGGGGGGGGTDGGPEGGA 108
>gnl|CDD|219320 pfam07172, GRP, Glycine rich protein family. This family of
proteins includes several glycine rich proteins as well
as two nodulins 16 and 24. The family also contains
proteins that are induced in response to various
stresses.
Length = 91
Score = 30.9 bits (70), Expect = 0.17
Identities = 17/37 (45%), Positives = 17/37 (45%)
Query: 14 GGGGGESGDGGESGDGGKSEGKSGGGSESGDENGGGG 50
GGGGG G G G GG G G G GGGG
Sbjct: 55 GGGGGYGGGGYYGGGGGYGGGGGGYPGGGGGGYGGGG 91
Score = 29.7 bits (67), Expect = 0.50
Identities = 17/45 (37%), Positives = 19/45 (42%), Gaps = 3/45 (6%)
Query: 9 TIRPTGGGGGESGDGGESGDGGKSEGKSGGGSESGDENGGGGTTH 53
++ GGG G GG G G G GGG G GGGG
Sbjct: 39 EVQDDKYGGGGGGYGGGGGGGYGGGGYYGGG---GGYGGGGGGYP 80
Score = 28.9 bits (65), Expect = 1.0
Identities = 17/37 (45%), Positives = 17/37 (45%)
Query: 14 GGGGGESGDGGESGDGGKSEGKSGGGSESGDENGGGG 50
GGGGG G GG G GG GGG G GG
Sbjct: 46 GGGGGGYGGGGGGGYGGGGYYGGGGGYGGGGGGYPGG 82
Score = 28.6 bits (64), Expect = 1.2
Identities = 17/37 (45%), Positives = 17/37 (45%), Gaps = 3/37 (8%)
Query: 14 GGGGGESGDGGESGDGGKSEGKSGGGSESGDENGGGG 50
GGGGG GG GG G GGG GGGG
Sbjct: 53 GGGGGGGYGGGGYYGGG---GGYGGGGGGYPGGGGGG 86
Score = 27.0 bits (60), Expect = 4.5
Identities = 18/37 (48%), Positives = 18/37 (48%)
Query: 14 GGGGGESGDGGESGDGGKSEGKSGGGSESGDENGGGG 50
GGGG G GG G GG G G G G GGGG
Sbjct: 48 GGGGYGGGGGGGYGGGGYYGGGGGYGGGGGGYPGGGG 84
Score = 26.6 bits (59), Expect = 5.4
Identities = 17/37 (45%), Positives = 17/37 (45%)
Query: 14 GGGGGESGDGGESGDGGKSEGKSGGGSESGDENGGGG 50
GGG G G GG G G G GG G GGGG
Sbjct: 49 GGGYGGGGGGGYGGGGYYGGGGGYGGGGGGYPGGGGG 85
>gnl|CDD|235792 PRK06390, PRK06390, adenylosuccinate lyase; Provisional.
Length = 451
Score = 32.6 bits (74), Expect = 0.24
Identities = 27/78 (34%), Positives = 38/78 (48%), Gaps = 4/78 (5%)
Query: 59 RTTELLHFDSPSGNSLDSISDRDFIIEFLSHCSITIMHLSRISEEFIIFMNPQFDYVS-- 116
R E+L S G++ I +RD IE+LS + + L +I+ E P+ D VS
Sbjct: 208 RVMEILGIYSEIGST--QIVNRDRYIEYLSVINGISVTLEKIATEIRNLQRPEIDEVSEY 265
Query: 117 LPDSLLTGSSIMPQKKNP 134
+ GSS MP K NP
Sbjct: 266 FDEESQVGSSSMPSKVNP 283
>gnl|CDD|237743 PRK14515, PRK14515, aspartate ammonia-lyase; Provisional.
Length = 479
Score = 32.7 bits (74), Expect = 0.28
Identities = 51/206 (24%), Positives = 88/206 (42%), Gaps = 35/206 (16%)
Query: 74 LDSISDRDFIIEFLSHCSITIMHLSRISEEF-IIFMNPQFDYVSLPDSLLT----GSSIM 128
+D+ + D E + + +M++S+I+ + ++ P+ V L + +L GSSIM
Sbjct: 271 VDATQNTDAYTEVSAALKVCMMNMSKIANDLRLMASGPR---VGLAEIMLPARQPGSSIM 327
Query: 129 PQKKNPDILELIRGKTGRVYGNLFNMLTIMKSQPLAYNKDMQECKQPLVDSIETLNMCLT 188
P K NP + E+I +V GN + ++ L N L+ SI +N
Sbjct: 328 PGKVNPVMPEVINQIAFQVIGNDHTICLASEAGQLELNVMEPVLVFNLLQSISIMN---N 384
Query: 189 AFKLILDN----VKFNTGRM--YVSAGEGF------SIATDIADYLAKKKIPFRSCHEIV 236
F+ DN ++ N R+ YV G I + A +AK+ I
Sbjct: 385 GFRAFTDNCLKGIEANEDRLKEYVEKSVGIITAVNPHIGYEAAARVAKEAI-------AT 437
Query: 237 GKIIK-FCVQEAKPLDQLSLEELKAI 261
G+ ++ CV+ LS E+L+ I
Sbjct: 438 GQSVRELCVKN----GVLSQEDLELI 459
>gnl|CDD|197548 smart00157, PRP, Major prion protein. The prion protein is a
major component of scrapie-associated fibrils in
Creutzfeldt-Jakob disease, kuru, Gerstmann-Straussler
syndrome and bovine spongiform encephalopathy.
Length = 218
Score = 31.8 bits (72), Expect = 0.29
Identities = 17/45 (37%), Positives = 18/45 (40%), Gaps = 3/45 (6%)
Query: 12 PTGGGGGESGDGG---ESGDGGKSEGKSGGGSESGDENGGGGTTH 53
P GGG G+ GG G G G G G G GG TH
Sbjct: 30 PQGGGWGQPHGGGWGQPHGGGWGQPHGGGWGQPHGGGWGQGGGTH 74
>gnl|CDD|176464 cd01360, Adenylsuccinate_lyase_1, Adenylsuccinate lyase
(ASL)_subgroup 1. This subgroup contains bacterial and
archeal proteins similar to ASL, a member of the Lyase
class I family. Members of this family for the most part
catalyze similar beta-elimination reactions in which a
C-N or C-O bond is cleaved with the release of fumarate
as one of the products. These proteins are active as
tetramers. The four active sites of the homotetrameric
enzyme are each formed by residues from three different
subunits. ASL catalyzes two steps in the de novo purine
biosynthesis: the conversion of
5-aminoimidazole-(N-succinylocarboxamide) ribotide
(SAICAR) into 5-aminoimidazole-4-carboxamide ribotide
(AICAR) and, the conversion of adenylsuccinate (SAMP)
into adenosine monophosphate (AMP).
Length = 387
Score = 31.8 bits (73), Expect = 0.41
Identities = 21/64 (32%), Positives = 29/64 (45%), Gaps = 1/64 (1%)
Query: 80 RDFIIEFLSHCSITIMHLSRISEEFIIFMNPQFDYVSLP-DSLLTGSSIMPQKKNPDILE 138
RD E+LS ++ L +I+ E + V P GSS MP K+NP + E
Sbjct: 213 RDRHAEYLSTLALIASTLEKIATEIRHLQRTEVLEVEEPFSKGQKGSSAMPHKRNPILSE 272
Query: 139 LIRG 142
I G
Sbjct: 273 NICG 276
>gnl|CDD|215598 PLN03138, PLN03138, Protein TOC75; Provisional.
Length = 796
Score = 32.1 bits (73), Expect = 0.42
Identities = 16/77 (20%), Positives = 27/77 (35%), Gaps = 14/77 (18%)
Query: 14 GGGGGESGDGGESGDGGKSEGKSGGGSESGDENGGGGTTH--------------PIDRYR 59
GGGG G GG G + + + +E G +H RY+
Sbjct: 90 FGGGGGGGGGGGGGWRFWLRLFAPADAHADEEQSGDWDSHGLPVNITVPLSKLSGFKRYK 149
Query: 60 TTELLHFDSPSGNSLDS 76
+E+ FD ++ +
Sbjct: 150 VSEIEFFDRRRNTTVGT 166
>gnl|CDD|221517 pfam12300, DUF3628, Protein of unknown function (DUF3628). This
domain family is found in bacteria, and is typically
between 153 and 183 amino acids in length. The family
is found in association with pfam00270, pfam00271.
Length = 180
Score = 31.2 bits (70), Expect = 0.47
Identities = 15/37 (40%), Positives = 17/37 (45%), Gaps = 2/37 (5%)
Query: 23 GGESGDGGKSEGKSGGGSESGDENGGGGTTHPIDRYR 59
GG SG G +S G G GD GGGG + R
Sbjct: 58 GGRSGPGERSGRPVGKGPRDGD--GGGGRRRGPRKPR 92
>gnl|CDD|236092 PRK07772, PRK07772, single-stranded DNA-binding protein;
Provisional.
Length = 186
Score = 30.8 bits (70), Expect = 0.55
Identities = 20/40 (50%), Positives = 21/40 (52%)
Query: 11 RPTGGGGGESGDGGESGDGGKSEGKSGGGSESGDENGGGG 50
R + GGGG G GG G GG S G GGG G GGG
Sbjct: 119 RASRGGGGGGGGGGFGGGGGGSGGGGGGGGGGGAPGGGGA 158
Score = 29.2 bits (66), Expect = 2.2
Identities = 15/39 (38%), Positives = 16/39 (41%)
Query: 12 PTGGGGGESGDGGESGDGGKSEGKSGGGSESGDENGGGG 50
GGGGG G GG SG GG G G G +
Sbjct: 126 GGGGGGGFGGGGGGSGGGGGGGGGGGAPGGGGAQASAPA 164
Score = 29.2 bits (66), Expect = 2.2
Identities = 16/44 (36%), Positives = 17/44 (38%)
Query: 8 KTIRPTGGGGGESGDGGESGDGGKSEGKSGGGSESGDENGGGGT 51
+ R GGGGG G GG G G G GGG G
Sbjct: 119 RASRGGGGGGGGGGFGGGGGGSGGGGGGGGGGGAPGGGGAQASA 162
Score = 28.5 bits (64), Expect = 3.4
Identities = 17/52 (32%), Positives = 18/52 (34%)
Query: 3 DVTKWKTIRPTGGGGGESGDGGESGDGGKSEGKSGGGSESGDENGGGGTTHP 54
VT+ GGGGG G GG GG G GG G P
Sbjct: 116 KVTRASRGGGGGGGGGGFGGGGGGSGGGGGGGGGGGAPGGGGAQASAPADDP 167
Score = 27.7 bits (62), Expect = 6.6
Identities = 18/45 (40%), Positives = 19/45 (42%)
Query: 12 PTGGGGGESGDGGESGDGGKSEGKSGGGSESGDENGGGGTTHPID 56
GGGGG G G G GG G GGG GG + P D
Sbjct: 121 SRGGGGGGGGGGFGGGGGGSGGGGGGGGGGGAPGGGGAQASAPAD 165
>gnl|CDD|234779 PRK00485, fumC, fumarate hydratase; Reviewed.
Length = 464
Score = 31.2 bits (72), Expect = 0.63
Identities = 10/15 (66%), Positives = 10/15 (66%)
Query: 124 GSSIMPQKKNPDILE 138
GSSIMP K NP E
Sbjct: 317 GSSIMPGKVNPTQCE 331
>gnl|CDD|224429 COG1512, COG1512, Beta-propeller domains of methanol dehydrogenase
type [General function prediction only].
Length = 271
Score = 31.2 bits (71), Expect = 0.66
Identities = 14/40 (35%), Positives = 18/40 (45%), Gaps = 1/40 (2%)
Query: 4 VTKWKTIRPTGGGGGESGDGGESGDGGKSEGKSGGGSESG 43
+ + + +GG GG G G G G SGGG SG
Sbjct: 231 LGRRRRSSGSGGSGGSGGGSSGGGFSG-GGGSSGGGGASG 269
Score = 30.8 bits (70), Expect = 0.80
Identities = 19/39 (48%), Positives = 19/39 (48%), Gaps = 5/39 (12%)
Query: 14 GGGGGESGDGGESGDGGKSE--GKSGGGSESGDENGGGG 50
G SG GG G GG S G SGGG SG GGG
Sbjct: 232 GRRRRSSGSGGSGGSGGGSSGGGFSGGGGSSG---GGGA 267
Score = 29.2 bits (66), Expect = 2.8
Identities = 17/30 (56%), Positives = 18/30 (60%), Gaps = 2/30 (6%)
Query: 13 TGGGGGESGDGGESGDGGKSEGKSGGGSES 42
+GG GG S GG SG GG S G GG S S
Sbjct: 243 SGGSGGGSSGGGFSGGGGSSGG--GGASGS 270
>gnl|CDD|236571 PRK09565, PRK09565, hypothetical protein; Reviewed.
Length = 533
Score = 30.9 bits (70), Expect = 0.85
Identities = 19/75 (25%), Positives = 25/75 (33%), Gaps = 10/75 (13%)
Query: 12 PTGGGGGESGDGGESGDGGKSEGKSGG---------GSESGDENGGGGTTHPIDRYRTTE 62
GG G + D E G+ G G GG G GG DR+ T
Sbjct: 269 AADGGTGGTHDAEEFGEHGHHGGHPGGEDGEHPHGHEDSGGHHGSGGDNFDHYDRHVATT 328
Query: 63 LLHFDSPSGNSLDSI 77
+ D +S + I
Sbjct: 329 -VRADGGREDSDEEI 342
>gnl|CDD|236545 PRK09510, tolA, cell envelope integrity inner membrane protein
TolA; Provisional.
Length = 387
Score = 30.5 bits (69), Expect = 0.97
Identities = 14/43 (32%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Query: 16 GGGESGDGGESGDGGKSEGKSGGGSESGDENGGGGTTHPIDRY 58
GG +SG GG ++G G+ +G+ GG + ID+Y
Sbjct: 264 GGLDSG-KNAPKTGGGAKGNGAQGAGAGNGKKGGASGADIDQY 305
>gnl|CDD|240440 PTZ00493, PTZ00493, phosphomethylpyrimidine kinase; Provisional.
Length = 321
Score = 30.7 bits (69), Expect = 1.0
Identities = 23/57 (40%), Positives = 29/57 (50%), Gaps = 3/57 (5%)
Query: 209 GEGFSIATDIADYLAKKKIPFRSCHEIVGKIIKFCVQEAKPL--DQLSLEELKAIHE 263
G G +++T IA YLAKK +SC E K I C++ A P L LKA E
Sbjct: 249 GTGCTLSTAIACYLAKKHNILQSCIE-SKKYIYNCIRYAYPFGSKSQGLNHLKASQE 304
>gnl|CDD|223192 COG0114, FumC, Fumarase [Energy production and conversion].
Length = 462
Score = 30.7 bits (70), Expect = 1.1
Identities = 15/36 (41%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Query: 115 VSLPDSLLTGSSIMPQKKNPDILELIRGKTGRVYGN 150
+ LP+ GSSIMP K NP E + +V GN
Sbjct: 308 IELPE-NEPGSSIMPGKVNPTQCEALTMVAAQVIGN 342
>gnl|CDD|233863 TIGR02426, protocat_pcaB, 3-carboxy-cis,cis-muconate
cycloisomerase. Members of this family are
3-carboxy-cis,cis-muconate cycloisomerase, the enzyme
the catalyzes the second step in the protocatechuate
degradation to beta-ketoadipate and then to succinyl-CoA
and acetyl-CoA. 4-hydroxybenzoate, 3-hydroxybenzoate,
and vanillate all can be converted in one step to
protocatechuate. All members of the seed alignment for
this model were chosen from within protocatechuate
degradation operons of at least three genes of the
pathway, from genomes with the complete pathway through
beta-ketoadipate [Energy metabolism, Other].
Length = 338
Score = 30.5 bits (69), Expect = 1.1
Identities = 21/72 (29%), Positives = 34/72 (47%), Gaps = 2/72 (2%)
Query: 78 SDRDFIIEFLSHCSITIMHLSRISEEFIIFMNPQFDYVSLPDSLLTGSSIMPQKKNPDIL 137
+ RD I EF S ++ L +I+ + + Q + + ++ GSS MP K+NP
Sbjct: 221 TQRDRIAEFGSALALVAGALGKIAGDIALLS--QTEVGEVFEAGGGGSSAMPHKRNPVGA 278
Query: 138 ELIRGKTGRVYG 149
L+ RV G
Sbjct: 279 ALLAAAARRVPG 290
>gnl|CDD|165416 PHA03145, PHA03145, helicase-primase primase subunit; Provisional.
Length = 1058
Score = 30.7 bits (69), Expect = 1.3
Identities = 14/63 (22%), Positives = 19/63 (30%), Gaps = 3/63 (4%)
Query: 11 RPTGGGGGESGDGGESGDG-GKSEGKSGGGSESGDENGGGGTTH--PIDRYRTTELLHFD 67
R G DG GDG G G E ++ H + + LH
Sbjct: 678 RAAAVDPGLGPDGEYDGDGPWFPAGGGPGDEEDDEDPDAEALAHGGVDEEAAYLDALHEQ 737
Query: 68 SPS 70
P+
Sbjct: 738 PPA 740
>gnl|CDD|215069 PLN00134, PLN00134, fumarate hydratase; Provisional.
Length = 458
Score = 30.0 bits (68), Expect = 1.5
Identities = 13/27 (48%), Positives = 15/27 (55%)
Query: 124 GSSIMPQKKNPDILELIRGKTGRVYGN 150
GSSIMP K NP E + +V GN
Sbjct: 309 GSSIMPGKVNPTQCEALTMVCAQVMGN 335
>gnl|CDD|176468 cd01596, Aspartase_like, aspartase (L-aspartate ammonia-lyase) and
fumarase class II enzymes. This group contains
aspartase (L-aspartate ammonia-lyase), fumarase class II
enzymes, and related proteins. It is a member of the
Lyase class I family. Members of this family for the
most part catalyze similar beta-elimination reactions in
which a C-N or C-O bond is cleaved with the release of
fumarate as one of the products. These proteins are
active as tetramers. The four active sites of the
homotetrameric enzyme are each formed by residues from
three different subunits. Aspartase catalyzes the
reversible deamination of aspartic acid. Fumarase
catalyzes the reversible hydration/dehydration of
fumarate to L-malate during the Krebs cycle.
Length = 450
Score = 30.1 bits (69), Expect = 1.8
Identities = 11/15 (73%), Positives = 11/15 (73%)
Query: 124 GSSIMPQKKNPDILE 138
GSSIMP K NP I E
Sbjct: 312 GSSIMPGKVNPVIPE 326
>gnl|CDD|168324 PRK05975, PRK05975, 3-carboxy-cis,cis-muconate cycloisomerase;
Provisional.
Length = 351
Score = 29.6 bits (67), Expect = 2.1
Identities = 21/57 (36%), Positives = 28/57 (49%), Gaps = 3/57 (5%)
Query: 78 SDRDFIIEFLSHCSITIMHLSRISEEFIIFMNPQFDYVSLPDSLLTGSSIMPQKKNP 134
S RDFI +F S+ L + ++ I M D +SL GSS MP K+NP
Sbjct: 229 SQRDFIADFAHLLSLVTGSLGKFGQD-IALMAQAGDEISLSGG--GGSSAMPHKQNP 282
>gnl|CDD|176465 cd01362, Fumarase_classII, Class II fumarases. This subgroup
contains Escherichia coli fumarase C, human
mitochondrial fumarase, and related proteins. It is a
member of the Lyase class I family. Members of this
family for the most part catalyze similar
beta-elimination reactions in which a C-N or C-O bond is
cleaved with the release of fumarate as one of the
products. These proteins are active as tetramers. The
four active sites of the homotetrameric enzyme are each
formed by residues from three different subunits.
Fumarase catalyzes the reversible hydration/dehydration
of fumarate to L-malate during the Krebs cycle.
Length = 455
Score = 29.8 bits (68), Expect = 2.2
Identities = 13/27 (48%), Positives = 15/27 (55%)
Query: 124 GSSIMPQKKNPDILELIRGKTGRVYGN 150
GSSIMP K NP E + +V GN
Sbjct: 313 GSSIMPGKVNPTQCEALTMVAAQVMGN 339
>gnl|CDD|217170 pfam02661, Fic, Fic/DOC family. This family consists of the Fic
(filamentation induced by cAMP) protein and doc (death
on curing). The Fic protein is involved in cell division
and is suggested to be involved in the synthesis of PAB
or folate, indicating that the Fic protein and cAMP are
involved in a regulatory mechanism of cell division via
folate metabolism. This family contains a central
conserved motif HPFXXGNG in most members. The exact
molecular function of these proteins is uncertain. P1
lysogens of Escherichia coli carry the prophage as a
stable low copy number plasmid. The frequency with which
viable cells cured of prophage are produced is about
10(-5) per cell per generation. A significant part of
this remarkable stability can be attributed to a
plasmid-encoded mechanism that causes death of cells
that have lost P1. In other words, the lysogenic cells
appear to be addicted to the presence of the prophage.
The plasmid withdrawal response depends on a gene named
doc (death on curing) that is represented by this
family. Doc induces a reversible growth arrest of E.
coli cells by targetting the protein synthesis
machinery. Doc hosts the C-terminal domain of its
antitoxin partner Phd (prevents host death) through fold
complementation, a domain that is intrinsically
disordered in solution but that folds into an
alpha-helix on binding to Doc.This domain forms
complexes with Phd antitoxins containing pfam02604.
Length = 94
Score = 27.7 bits (62), Expect = 2.8
Identities = 16/53 (30%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
Query: 253 LSLEELKAIHEDIGEDIFEILSVEKSVEHKDHVGATA-PSQVQHSVDVFENFV 304
L+LE+L IH + EDI + V+ A A P Q+ +D E +
Sbjct: 2 LTLEDLLEIHRILLEDIGPWAGEFRDVDVGLLESALARPEQIPAGLDELELYP 54
>gnl|CDD|218967 pfam06273, eIF-4B, Plant specific eukaryotic initiation factor 4B.
This family consists of several plant specific
eukaryotic initiation factor 4B proteins.
Length = 496
Score = 28.9 bits (64), Expect = 3.8
Identities = 19/76 (25%), Positives = 30/76 (39%), Gaps = 5/76 (6%)
Query: 3 DVTKW-KTIRPTGGGGGESGDGGESGDGGKSEGKSGGGSESGDENGGGGTTHP----IDR 57
++ W + + T + G G GG + G GGG G+ GG P DR
Sbjct: 156 EIDDWGRGKKSTPLPSFDQGRQGRYPSGGGAFGGGGGGGGGGERRSGGFRDSPGADDSDR 215
Query: 58 YRTTELLHFDSPSGNS 73
+ ++ F S G +
Sbjct: 216 WGRKKVETFGSAFGEN 231
>gnl|CDD|219817 pfam08389, Xpo1, Exportin 1-like protein. The sequences featured
in this family are similar to a region close to the
N-terminus of yeast exportin 1 (Xpo1, Crm1). This region
is found just C-terminal to an importin-beta N-terminal
domain (pfam03810) in many members of this family.
Exportin 1 is a nuclear export receptor that interacts
with leucine-rich nuclear export signal (NES) sequences,
and Ran-GTP, and is involved in translocation of
proteins out of the nucleus.
Length = 147
Score = 28.0 bits (63), Expect = 3.8
Identities = 13/90 (14%), Positives = 29/90 (32%), Gaps = 23/90 (25%)
Query: 80 RDFIIEFLS-------HCSITIMHLSRISEEFIIFMNPQFDYVSLPDSLLTGSSIMPQKK 132
F + +S C + + L + EE F + + Q++
Sbjct: 25 PTFFPDLVSLLSSSPSGCELLLRILKVLPEEIFDFSR----------------TPLTQQR 68
Query: 133 NPDILELIRGKTGRVYGNLFNMLTIMKSQP 162
+ +L+R + ++ L +L S
Sbjct: 69 RNRLKDLLRSQMPQILELLLQILENSVSAH 98
>gnl|CDD|234526 TIGR04260, Cyano_gly_rpt, rSAM-associated Gly-rich repeat protein.
Members of this protein family average 125 in length,
roughly half of which is the repetitive and extremely
Gly-rich C-terminal region. Virtually all members occur
in the Cyanobacteria, in a neighborhood that includes a
radical SAM/SPASM domain, often a marker of peptide
modification systems.
Length = 119
Score = 27.8 bits (62), Expect = 3.9
Identities = 16/39 (41%), Positives = 19/39 (48%), Gaps = 3/39 (7%)
Query: 15 GGGGESGDGGESG---DGGKSEGKSGGGSESGDENGGGG 50
GGG G+GG G +GG G G + G NG GG
Sbjct: 76 GGGRGWGNGGSGGGWVNGGGGWGNGGWVNGGGWRNGYGG 114
>gnl|CDD|236941 PRK11634, PRK11634, ATP-dependent RNA helicase DeaD; Provisional.
Length = 629
Score = 29.0 bits (65), Expect = 3.9
Identities = 15/42 (35%), Positives = 18/42 (42%), Gaps = 2/42 (4%)
Query: 11 RPTGGG--GGESGDGGESGDGGKSEGKSGGGSESGDENGGGG 50
R GG GGE +GG + G + EG G G E G
Sbjct: 571 RRGGGRGFGGERREGGRNFSGERREGGRGDGRRFSGERREGR 612
>gnl|CDD|193258 pfam12782, Innate_immun, Invertebrate innate immunity transcript
family. The immune response of the purple sea urchin
appears to be more complex than previously believed in
that it uses immune-related gene families homologous to
vertebrate Toll-like and NOD/NALP-like receptor families
as well as C-type lectins and a rudimentary complement
system. In addition, the species also produces this
unusual family of mRNAs, also known as 185/333, which is
strongly upregulated in response to pathogen challenge.
Length = 312
Score = 28.5 bits (63), Expect = 4.8
Identities = 19/51 (37%), Positives = 20/51 (39%), Gaps = 4/51 (7%)
Query: 11 RPTGGGGGESGDGGESGDGGKSEGKSGGGSESGDENGGGGTTH----PIDR 57
RP G GG GDG E D + G GG D G H P DR
Sbjct: 107 RPFFGQGGRRGDGEEETDAAQQIGDGLGGPGQFDGPGRRHHGHRQGPPQDR 157
>gnl|CDD|217396 pfam03164, Mon1, Trafficking protein Mon1. Members of this family
have been called SAND proteins although these proteins
do not contain a SAND domain. In Saccharomyces
cerevisiae a protein complex of Mon1 and Ccz1 functions
with the small GTPase Ypt7 to mediate vesicle
trafficking to the vacuole. The Mon1/Ccz1 complex is
conserved in eukaryotic evolution and members of this
family (previously known as DUF254) are distant
homologues to domains of known structure that assemble
into cargo vesicle adapter (AP) complexes. describes
orthologues in Fugu rubripes.
Length = 413
Score = 28.5 bits (64), Expect = 4.9
Identities = 25/99 (25%), Positives = 46/99 (46%), Gaps = 9/99 (9%)
Query: 70 SGNSLDSISDRDFIIEFLSHCSITIMHLSRISEEFIIFMNPQFDYV-SLPDSLLTGSS-- 126
G+++ SI I FL + ++ +SR ++ + + Y+ S+LT S
Sbjct: 51 DGDAIRSIHADGNKIVFLQKSPLILVAVSRTTQSAAELLQ-ELLYLYYQILSILTASQLQ 109
Query: 127 -IMPQKKNPDILELIRGKTGRVYGNLFNMLTIMKSQPLA 164
I +K+N D+ L+ G + R+ L N+L + PL
Sbjct: 110 RIFQKKQNYDLRRLLSG-SERL---LDNLLDSLNRDPLV 144
>gnl|CDD|129557 TIGR00465, ilvC, ketol-acid reductoisomerase. This is the second
enzyme in the parallel isoleucine-valine biosynthetic
pathway [Amino acid biosynthesis, Pyruvate family].
Length = 314
Score = 28.1 bits (63), Expect = 5.3
Identities = 14/46 (30%), Positives = 25/46 (54%), Gaps = 5/46 (10%)
Query: 267 EDIFEILSVEKSVEHKDHVGATAPSQVQHSVDVFENFVKDMTDLLK 312
ED F++ +VE+++ D + P +VQH V + ++ LLK
Sbjct: 45 EDGFKVGTVEEAIPQADLIMNLLPDEVQHEV-----YEAEIQPLLK 85
>gnl|CDD|221872 pfam12954, DUF3843, Protein of unknown function (DUF3843). A
family of uncharacterized proteins found by clustering
human gut metagenomic sequences.
Length = 325
Score = 28.5 bits (64), Expect = 5.3
Identities = 24/110 (21%), Positives = 40/110 (36%), Gaps = 29/110 (26%)
Query: 126 SIMPQKKNPDILELIRGKTGRVYGNLFNMLTIMKSQPLAYNKDMQECKQPLVDS--IETL 183
I P++K P+ E +G +PL Y +E + LV+ E
Sbjct: 176 PIEPEEKLPEDYEKFLEASG--------------GKPLLYFDSYKELCRFLVEVLKWEDE 221
Query: 184 NMC----LTAFKLILDNVKFNTGRMYVSAGEGFSIATDIADYLAKKKIPF 229
L K F +Y + +G +A D+A+Y+A + P
Sbjct: 222 ENSLLPDLKEEK------NF---VVYANPEKGLLLAPDVAEYIADENNPM 262
>gnl|CDD|222374 pfam13779, DUF4175, Domain of unknown function (DUF4175).
Length = 820
Score = 28.3 bits (64), Expect = 5.6
Identities = 11/37 (29%), Positives = 17/37 (45%)
Query: 14 GGGGGESGDGGESGDGGKSEGKSGGGSESGDENGGGG 50
G G+ G GG+ +G+ G G + G + GG
Sbjct: 620 GEQQGQQGQGGQGQGQPGQQGQQGQGQQQGQQGQGGQ 656
>gnl|CDD|176470 cd01598, PurB, PurB_like adenylosuccinases (adenylsuccinate lyase,
ASL). This subgroup contains EcASL, the product of the
purB gene in Escherichia coli, and related proteins. It
is a member of the Lyase class I family of the Lyase_I
superfamily. Members of the Lyase class I family
function as homotetramers to catalyze similar
beta-elimination reactions in which a Calpha-N or
Calpha-O bond is cleaved with the subsequent release of
fumarate as one of the products. The four active sites
of the homotetrameric enzyme are each formed by residues
from three different subunits. ASL catalyzes two
non-sequential steps in the de novo purine biosynthesis
pathway: the conversion of
5-aminoimidazole-(N-succinylocarboxamide) ribotide
(SAICAR) into 5-aminoimidazole-4-carboxamide ribotide
(AICAR) and; the conversion of adenylsuccinate (SAMP)
into adenosine monophosphate (AMP).
Length = 425
Score = 28.4 bits (64), Expect = 5.7
Identities = 17/65 (26%), Positives = 24/65 (36%), Gaps = 15/65 (23%)
Query: 77 ISDRDFIIEFLSHCSITIMHLSRISEEFIIFMNPQF-DYVSL------PDSLLTGSSIMP 129
I D+I E + ++ I +I + Y+SL GSS MP
Sbjct: 226 IEPHDYIAELFDALA----RINTI----LIDLCRDIWGYISLGYFKQKVKKGEVGSSTMP 277
Query: 130 QKKNP 134
K NP
Sbjct: 278 HKVNP 282
>gnl|CDD|236452 PRK09285, PRK09285, adenylosuccinate lyase; Provisional.
Length = 456
Score = 28.2 bits (64), Expect = 6.7
Identities = 8/12 (66%), Positives = 8/12 (66%)
Query: 123 TGSSIMPQKKNP 134
GSS MP K NP
Sbjct: 293 IGSSTMPHKVNP 304
>gnl|CDD|235229 PRK04156, gltX, glutamyl-tRNA synthetase; Provisional.
Length = 567
Score = 28.3 bits (64), Expect = 6.7
Identities = 12/47 (25%), Positives = 24/47 (51%), Gaps = 3/47 (6%)
Query: 236 VGKIIKFCVQEAKPLDQLSLEELKAIHEDIGEDIFEILSVEKSVEHK 282
+ I+K V+E ++ LSLEE + E++ ++ E +K +
Sbjct: 47 IIPIVKEVVEE---VNSLSLEEQRERLEELAPELLEEEEEKKEEKKG 90
>gnl|CDD|218005 pfam04285, DUF444, Protein of unknown function (DUF444). Bacterial
protein of unknown function. One family member is
predicted to contain a von Willebrand factor (vWF) type
A domain (Smart:VWA).
Length = 421
Score = 27.8 bits (62), Expect = 7.9
Identities = 10/19 (52%), Positives = 11/19 (57%)
Query: 11 RPTGGGGGESGDGGESGDG 29
R GGGG G G +GDG
Sbjct: 90 RDPGGGGSGPGKGQAAGDG 108
>gnl|CDD|236722 PRK10590, PRK10590, ATP-dependent RNA helicase RhlE; Provisional.
Length = 456
Score = 27.9 bits (62), Expect = 8.3
Identities = 10/37 (27%), Positives = 13/37 (35%)
Query: 14 GGGGGESGDGGESGDGGKSEGKSGGGSESGDENGGGG 50
GGG G GG G + GG++S
Sbjct: 393 QRGGGGRGQGGGRGQQQGQPRRGEGGAKSASAKPAEK 429
>gnl|CDD|147458 pfam05268, GP38, Phage tail fibre adhesin Gp38. This family
contains several Gp38 proteins from T-even-like phages.
Gp38, together with a second phage protein, gp57,
catalyzes the organisation of gp37 but is absent from
the phage particle. Gp37 is responsible for receptor
recognition.
Length = 261
Score = 27.5 bits (61), Expect = 9.4
Identities = 21/52 (40%), Positives = 22/52 (42%), Gaps = 13/52 (25%)
Query: 14 GGGGGES------------GDGGES-GDGGKSEGKSGGGSESGDENGGGGTT 52
GGGGG S G GG G GGKS GG+ S GGG T
Sbjct: 156 GGGGGASLKNSWRGNGVCGGGGGRPFGAGGKSGSHMSGGNASLTAPGGGSGT 207
>gnl|CDD|181437 PRK08470, PRK08470, adenylosuccinate lyase; Provisional.
Length = 442
Score = 27.8 bits (62), Expect = 9.6
Identities = 11/19 (57%), Positives = 13/19 (68%)
Query: 124 GSSIMPQKKNPDILELIRG 142
GSS MP K+NP + E I G
Sbjct: 261 GSSAMPHKRNPVLSENITG 279
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.316 0.136 0.393
Gapped
Lambda K H
0.267 0.0613 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 16,144,793
Number of extensions: 1580219
Number of successful extensions: 2186
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1933
Number of HSP's successfully gapped: 137
Length of query: 314
Length of database: 10,937,602
Length adjustment: 97
Effective length of query: 217
Effective length of database: 6,635,264
Effective search space: 1439852288
Effective search space used: 1439852288
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 59 (26.8 bits)