RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy15027
(314 letters)
>d1tj7a_ a.127.1.1 (A:) Argininosuccinate lyase/delta-crystallin
{Escherichia coli [TaxId: 562]}
Length = 455
Score = 220 bits (560), Expect = 3e-69
Identities = 109/247 (44%), Positives = 157/247 (63%)
Query: 48 GGGTTHPIDRYRTTELLHFDSPSGNSLDSISDRDFIIEFLSHCSITIMHLSRISEEFIIF 107
GT + IDR + L F S + NSLDS+SDRD ++E LS +I ++HLSR +E+ I F
Sbjct: 198 LAGTAYEIDREQLAGWLGFASATRNSLDSVSDRDHVLELLSAAAIGMVHLSRFAEDLIFF 257
Query: 108 MNPQFDYVSLPDSLLTGSSIMPQKKNPDILELIRGKTGRVYGNLFNMLTIMKSQPLAYNK 167
+ +V L D + +GSS+MPQKKNPD LELIRGK GRV G L M+ +K PLAYNK
Sbjct: 258 NTGEAGFVELSDRVTSGSSLMPQKKNPDALELIRGKCGRVQGALTGMMMTLKGLPLAYNK 317
Query: 168 DMQECKQPLVDSIETLNMCLTAFKLILDNVKFNTGRMYVSAGEGFSIATDIADYLAKKKI 227
DMQE K+ L D+++T CL L+LD ++ R +A +G++ AT++ADYL K +
Sbjct: 318 DMQEDKEGLFDALDTWLDCLHMAALVLDGIQVKRPRCQEAAQQGYANATELADYLVAKGV 377
Query: 228 PFRSCHEIVGKIIKFCVQEAKPLDQLSLEELKAIHEDIGEDIFEILSVEKSVEHKDHVGA 287
PFR H IVG+ + +++ KPL+ L L EL+ + I ED++ ILS++ ++ + G
Sbjct: 378 PFREAHHIVGEAVVEAIRQGKPLEDLPLSELQKFSQVIDEDVYPILSLQSCLDKRAAKGG 437
Query: 288 TAPSQVQ 294
+P QV
Sbjct: 438 VSPQQVA 444
>d1k62b_ a.127.1.1 (B:) Argininosuccinate lyase/delta-crystallin
{Human (Homo sapiens) [TaxId: 9606]}
Length = 459
Score = 190 bits (483), Expect = 1e-57
Identities = 91/260 (35%), Positives = 142/260 (54%), Gaps = 1/260 (0%)
Query: 46 NGGGGTTHPIDRYRTTELLHFDSPSGNSLDSISDRDFIIEFLSHCSITIMHLSRISEEFI 105
G +DR L+F + + NS+D+ S+RDF+ EFL S+ + HLSR++E+ I
Sbjct: 197 GAIAGNPLGVDRELLRAELNFGAITLNSMDATSERDFVAEFLFWRSLCMTHLSRMAEDLI 256
Query: 106 IFMNPQFDYVSLPDSLLTGSSIMPQKKNPDILELIRGKTGRVYGNLFNMLTIMKSQPLAY 165
++ +F +V L D+ TGSS+MP+KKNPD LELIR K GRV+G +L +K P Y
Sbjct: 257 LYCTKEFSFVQLSDAYSTGSSLMPRKKNPDSLELIRSKAGRVFGRCAGLLMTLKGLPSTY 316
Query: 166 NKDMQECKQPLVDSIETLNMCLTAFKLILDNVKFNTGRMYVSAGEGFSIATDIADYLAKK 225
NKD+QE K+ + + +T++ L ++ ++ + M + +ATD+A YL +K
Sbjct: 317 NKDLQEDKEAVFEVSDTMSAVLQVATGVISTLQIHQENMGQALSPDM-LATDLAYYLVRK 375
Query: 226 KIPFRSCHEIVGKIIKFCVQEAKPLDQLSLEELKAIHEDIGEDIFEILSVEKSVEHKDHV 285
+PFR HE GK + + L+QLSL+EL+ I D+ + SVE +
Sbjct: 376 GMPFRQAHEASGKAVFMAETKGVALNQLSLQELQTISPLFSGDVICVWDYRHSVEQYGAL 435
Query: 286 GATAPSQVQHSVDVFENFVK 305
G TA S V + ++
Sbjct: 436 GGTARSSVDWQIRQVRALLQ 455
>d1tjva_ a.127.1.1 (A:) Argininosuccinate lyase/delta-crystallin
{Domestic duck (Anas platyrhynchos), delta-crystallin
[TaxId: 8839]}
Length = 449
Score = 189 bits (479), Expect = 3e-57
Identities = 96/258 (37%), Positives = 151/258 (58%), Gaps = 1/258 (0%)
Query: 48 GGGTTHPIDRYRTTELLHFDSPSGNSLDSISDRDFIIEFLSHCSITIMHLSRISEEFIIF 107
G IDR L F S S NS+D+IS+RDF++EFLS ++ ++HLS+++E+ II+
Sbjct: 188 LAGNPLDIDREMLRSELEFASISLNSMDAISERDFVVEFLSFATLLMIHLSKMAEDLIIY 247
Query: 108 MNPQFDYVSLPDSLLTGSSIMPQKKNPDILELIRGKTGRVYGNLFNMLTIMKSQPLAYNK 167
+F +++L D+ TGSS+MPQKKNPD LELIR K GRV+G L ++L ++K P YNK
Sbjct: 248 STSEFGFLTLSDAFSTGSSLMPQKKNPDSLELIRSKAGRVFGRLASILMVLKGLPSTYNK 307
Query: 168 DMQECKQPLVDSIETLNMCLTAFKLILDNVKFNTGRMYVSAGEGFSIATDIADYLAKKKI 227
D+QE K+ + D ++TL L ++ ++ + M + +ATD+A YL +K +
Sbjct: 308 DLQEDKEAVFDVVDTLTAVLQVATGVISTLQISKENMEKA-LTPEMLATDLALYLVRKGV 366
Query: 228 PFRSCHEIVGKIIKFCVQEAKPLDQLSLEELKAIHEDIGEDIFEILSVEKSVEHKDHVGA 287
PFR H GK + + +++LSLE+LK+I D+ ++ + SVE +
Sbjct: 367 PFRQAHTASGKAVHLAETKGITINKLSLEDLKSISPQFSSDVSQVFNFVNSVEQYTALAG 426
Query: 288 TAPSQVQHSVDVFENFVK 305
TA S V ++ +K
Sbjct: 427 TAKSSVTTQIEQLRELMK 444
>d1c3ca_ a.127.1.1 (A:) Adenylosuccinate lyase {Thermotoga maritima
[TaxId: 2336]}
Length = 429
Score = 143 bits (361), Expect = 3e-40
Identities = 40/239 (16%), Positives = 81/239 (33%), Gaps = 10/239 (4%)
Query: 53 HPIDRYRTTELLHFDSPSGNSLDSISDRDFIIEFLSHCSITIMHLSRISEEFIIFMNPQF 112
P + P S + RD +LS +I + RI+ E +
Sbjct: 189 VPPEVEEKALSYLGLKPEPVS-TQVVPRDRHAFYLSTLAIVAAGIERIAVEIRHLQRTEV 247
Query: 113 DYVSLP-DSLLTGSSIMPQKKNPDILELIRGKTGRVYGNLFNMLTIMKSQPLAYNKDMQE 171
V P GSS MP KKNP E + G + + + +++ L + +D+
Sbjct: 248 LEVEEPFRKGQRGSSAMPHKKNPITCERLTGLSRMMRAY---VDPSLENIALWHERDISH 304
Query: 172 CKQPLVDSIETLNMCLTAFKLILDNVKFNT-----GRMYVSAGEGFSIATDIADYLAKKK 226
+ + V+ + + +G + + L +K
Sbjct: 305 SSVERYVFPDATQTLYYMIVTATNVVRNMKVNEERMKKNIDLTKGLVFSQRVLLKLIEKG 364
Query: 227 IPFRSCHEIVGKIIKFCVQEAKPLDQLSLEELKAIHEDIGEDIFEILSVEKSVEHKDHV 285
+ + ++IV + K + LE+ + E++ E+ + ++H DH+
Sbjct: 365 LTRKEAYDIVQRNALKTWNSEKHFLEYLLEDEEVKKLVTKEELEELFDISYYLKHVDHI 423
>gi|89101013|ref|ZP_01173856.1|(9-416:430) adenylosuccinate lyase
[Bacillus sp. NRRL B-14911] gi|89084274|gb|EAR63432.1|
adenylosuccinate lyase [Bacillus sp. NRRL B-14911] E=0
s/c=1.85 id=87% cov=100%
Length = 408
Score = 134 bits (339), Expect = 4e-37
Identities = 42/233 (18%), Positives = 76/233 (32%), Gaps = 11/233 (4%)
Query: 47 GGGGTTHPIDRYRTTELLHFDSPSGNSLDSISDRDFIIEFLSHCSITIMHLSRISEEFII 106
G +P E L + RD +++ S+ + + + E
Sbjct: 177 GTYANINPFVESYVCEKLGLQPAPIS--TQTLQRDRHAHYMAAISLIATSIEKFAVEIRG 234
Query: 107 FMNPQFDYVS-LPDSLLTGSSIMPQKKNPDILELIRGKTGRVYGNLFNMLTIMKSQPLAY 165
+ V GSS MP K+NP E + G + G +MLT ++ PL +
Sbjct: 235 LQKSETREVEEFFAKGQKGSSAMPHKRNPIGSENMTGLARVIRG---HMLTAYENVPLWH 291
Query: 166 NKDMQECK---QPLVDSIETLNMCLTAFKLILDNVKFNTGRM--YVSAGEGFSIATDIAD 220
+D+ L D+ LN L F I+ N+ M + G + +
Sbjct: 292 ERDISHSSAERIILPDATIALNYMLNRFGNIVKNLTVFPENMKRNMDRTLGLIYSQRVLL 351
Query: 221 YLAKKKIPFRSCHEIVGKIIKFCVQEAKPLDQLSLEELKAIHEDIGEDIFEIL 273
L K + +++V ++ L + E+I +
Sbjct: 352 ALIDKGMAREEAYDVVQPRAMEAWEKQVAFKSLVEADETISSRLSAEEIEDCF 404
>d1yfma_ a.127.1.1 (A:) Fumarase {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 459
Score = 134 bits (339), Expect = 9e-37
Identities = 45/249 (18%), Positives = 88/249 (35%), Gaps = 16/249 (6%)
Query: 32 SEGKSGGGSESGDENGGGGTTHPIDRYRTTELLHFDSPSGNSLDSISDRDFIIEFLSHCS 91
S GG + N G I + E + N ++++ D I+E +
Sbjct: 222 SFLAQGGTAVGTGLNTKPGFDVKIAEQISKETGLKFQTAPNRFEALAAHDAIVECSGALN 281
Query: 92 ITIMHLSRISEEFIIFMN-PQFDYVSLPDSLLTG-SSIMPQKKNPDILELIRGKTGRVYG 149
L +I+++ + P+ Y L SSIMP K NP E + +V G
Sbjct: 282 TLACSLFKIAQDIRYLGSGPRCGYHELMLPENEPGSSIMPGKVNPTQNEALTQVCVQVMG 341
Query: 150 NLFNMLTIMKSQPLAYNKDMQECKQPLVDSIETL-NMCLTAFKLILDNVKFNTGRMYVSA 208
N + N L++SI + + + ++ +K N R++
Sbjct: 342 NNAAITFAGSQGQFELNVFKPVMIANLLNSIRLITDAAYSFRVHCVEGIKANEPRIHELL 401
Query: 209 GEGFSIATDIADYLAKKKIPFRSCHEIVGKIIKFCVQEAKPLDQLSLEELKAIHEDIGED 268
+ + T + + ++ K+ K ++ L + +L EL + E ++
Sbjct: 402 TKSLMLVTALNPKIG---------YDAASKVAKNAHKKGITLKESAL-ELGVLTE---KE 448
Query: 269 IFEILSVEK 277
E + E
Sbjct: 449 FDEWVVPEH 457
>d1fuoa_ a.127.1.1 (A:) Fumarase {Escherichia coli [TaxId: 562]}
Length = 456
Score = 126 bits (316), Expect = 2e-33
Identities = 38/249 (15%), Positives = 76/249 (30%), Gaps = 16/249 (6%)
Query: 32 SEGKSGGGSESGDENGGGGTTHPIDRYRTTELLHFDSPSGNSLDSISDRDFIIEFLSHCS 91
+E GG + N + + N ++++ D +++
Sbjct: 220 AELALGGTAVGTGLNTHPEYARRVADELAVITCAPFVTAPNKFEALATCDALVQAHGALK 279
Query: 92 ITIMHLSRISEEFIIFMNPQFDYVSLPDSLL--TGSSIMPQKKNPDILELIRGKTGRVYG 149
L +I+ + + + GSSIMP K NP E + +V G
Sbjct: 280 GLAASLMKIANDVRWLASGPRCGIGEISIPENEPGSSIMPGKVNPTQCEALTMLCCQVMG 339
Query: 150 NLFNMLTIMKSQPLAYNKDMQECKQPLVDSIETLNMCLTAF-KLILDNVKFNTGRMYVSA 208
N + S N + S+ L + +F K ++ N R+
Sbjct: 340 NDVAINMGGASGNFELNVFRPMVIHNFLQSVRLLADGMESFNKHCAVGIEPNRERINQLL 399
Query: 209 GEGFSIATDIADYLAKKKIPFRSCHEIVGKIIKFCVQEAKPLDQLSLEELKAIHEDIGED 268
E + T + ++ ++ +I K +E L L + E +
Sbjct: 400 NESLMLVTALNTHIG---------YDKAAEIAKKAHKEGLTLKAA-ALALGYLSE---AE 446
Query: 269 IFEILSVEK 277
+ E+
Sbjct: 447 FDSWVRPEQ 455
>d1vdka_ a.127.1.1 (A:) Fumarase {Thermus thermophilus [TaxId: 274]}
Length = 460
Score = 118 bits (296), Expect = 8e-31
Identities = 47/244 (19%), Positives = 83/244 (34%), Gaps = 17/244 (6%)
Query: 38 GGSESGDENGGGGTTHPIDRYRTTELLHFD-SPSGNSLDSISDRDFIIEFLSHCSITIMH 96
GG+ G + E + N +++ D ++ +
Sbjct: 225 GGTAVGTGLNAHPRFGELVAKYLAEETGLPFRVAENRFAALAAHDELVNVMGAIRTLAGA 284
Query: 97 LSRISEEFIIFMNPQFDYVSLPDSLL--TGSSIMPQKKNPDILELIRGKTGRVYGNLFNM 154
L +I + + + + GSSIMP K NP +E + RVYGN +
Sbjct: 285 LMKIGNDVRWLASGPYAGIGEITIPANEPGSSIMPGKVNPTQVEALTMVVVRVYGNDHTV 344
Query: 155 LTIMKSQPLAYNKDMQECKQPLVDSIETL-NMCLTAFKLILDNVKFNTGRMYVSAGEGFS 213
N ++SI L + + + ++ N R+ +
Sbjct: 345 AFAGSQGNFQLNVYKPVMAYSTLESINLLADAVASFDAHLAQGIEPNLERIEEYLQKNPM 404
Query: 214 IATDIADYLAKKKIPFRSCHEIVGKIIKFCVQEAKPLDQLSLEELKAIHEDIGEDIFEIL 273
+AT + K I + EIV K ++E K L Q +L EL + E E+ I+
Sbjct: 405 LATALN-----KAIGYDKAAEIVKK----ALKEKKTLKQAAL-ELGYLTE---EEFDRIV 451
Query: 274 SVEK 277
+
Sbjct: 452 VPMR 455
>d1j3ua_ a.127.1.1 (A:) L-aspartate ammonia lyase {Bacillus sp.,
ym55-1 [TaxId: 1409]}
Length = 462
Score = 117 bits (293), Expect = 2e-30
Identities = 44/247 (17%), Positives = 94/247 (38%), Gaps = 16/247 (6%)
Query: 37 GGGSESGDENGGGGTTHPIDRYRTTELLHFDSPSGNSLDSISDRDFIIEFLSHCSITIMH 96
G + N + + H + + +D+ + D E S + +++
Sbjct: 224 GATAVGTGLNADPEYISIVTEHLAKFSGHPLRSAQHLVDATQNTDCYTEVSSALKVCMIN 283
Query: 97 LSRISEEFIIFMNPQFDYVS--LPDSLLTGSSIMPQKKNPDILELIRGKTGRVYGNLFNM 154
+S+I+ + + + +S + + GSSIMP K NP + E++ +V+GN +
Sbjct: 284 MSKIANDLRLMASGPRAGLSEIVLPARQPGSSIMPGKVNPVMPEVMNQVAFQVFGNDLTI 343
Query: 155 LTIMKSQPLAYNKDMQECKQPLVDSIETLNMCLTAF-KLILDNVKFNTGRMYVSAGEGFS 213
+ ++ N L+ SI + +F + L +K N RM +
Sbjct: 344 TSASEAGQFELNVMEPVLFFNLIQSISIMTNVFKSFTENCLKGIKANEERMKEYVEKSIG 403
Query: 214 IATDIADYLAKKKIPFRSCHEIVGKIIKFCVQEAKPLDQLSLEELKAIHEDIGEDIFEIL 273
I T I ++ +E K+ + + + +L + + E E + EIL
Sbjct: 404 IITAINPHVG---------YETAAKLAREAYLTGESIREL-CIKYGVLTE---EQLNEIL 450
Query: 274 SVEKSVE 280
+ + +
Sbjct: 451 NPYEMIH 457
>d1dofa_ a.127.1.1 (A:) Adenylosuccinate lyase {Archaeon Pyrobaculum
aerophilum [TaxId: 13773]}
Length = 402
Score = 110 bits (274), Expect = 5e-28
Identities = 28/219 (12%), Positives = 69/219 (31%), Gaps = 6/219 (2%)
Query: 46 NGGGGTTHPIDRYRTTELLHFDSPSGNSLDSI-SDRDFIIEFLSHCSITIMHLSRISEEF 104
G + + + + + + + R+ S ++ R++ E
Sbjct: 184 VGTMASWGELGLEVRRRVAERLGLPHHVITTQVAPRESFAVLASALALMAAVFERLAVEI 243
Query: 105 IIFMNPQFDYVSLPDSLLTGSSIMPQKKNPDILELIRGKTGRVYGNLFNMLTIMKSQPLA 164
P+ V GSS MP K NP E I V +
Sbjct: 244 RELSRPEIGEVVEGG---GGSSAMPHKANPTASERIVSLARYVRALTHVAFENVALWHER 300
Query: 165 YNKDMQECKQPLVDSIETLNMCLTAFKLILDNVKFNTGRM--YVSAGEGFSIATDIADYL 222
+ + + +++ L+ LT+ +L NV + R+ + + + + +
Sbjct: 301 DLTNSANERVWIPEALLALDEILTSALRVLKNVYIDEERITENLQKALPYILTEFHMNRM 360
Query: 223 AKKKIPFRSCHEIVGKIIKFCVQEAKPLDQLSLEELKAI 261
K+ ++ ++ + K + +E+ ++
Sbjct: 361 IKEGASRAEAYKKAKEVKALTFEYQKWPVERLIEDALSL 399
>d1re5a_ a.127.1.1 (A:) 3-carboxy-cis,cis-muconate cycloisomerase
(CMLE) {Pseudomonas putida, strain KT2440 [TaxId: 303]}
Length = 448
Score = 108 bits (270), Expect = 3e-27
Identities = 46/247 (18%), Positives = 89/247 (36%), Gaps = 12/247 (4%)
Query: 52 THPIDRYRTTELLHFDSPSG-NSLDSISDRDFIIEFLSHCSITIMHLSRISEEFIIFMNP 110
E L + RD ++EF S + L + + + M
Sbjct: 199 ALGSKAMPVAEALAEQLKLTLPEQPWHTQRDRLVEFASVLGLVAGSLGKFGRDISLLMQT 258
Query: 111 QFDYVS-LPDSLLTGSSIMPQKKNPDILELIRGKTGRVYGNLFNMLTIMKSQPLAYNKDM 169
+ V GSS MP K+NP ++ G RV G L + M +
Sbjct: 259 EAGEVFEPSAPGKGGSSTMPHKRNPVGAAVLIGAATRVPGLLSTLFAAMPQEHERSLGLW 318
Query: 170 QECKQPLVDSIETLNMCLTAFKLILDNVKFNTGRM--YVSAGEGFSIATDIADYLAKKKI 227
+ L D ++ L ++I + ++ + RM + +G +A ++ LA++ +
Sbjct: 319 HAEWETLPDICCLVSGALRQAQVIAEGMEVDAARMRRNLDLTQGLVLAEAVSIVLAQR-L 377
Query: 228 PFRSCHEIVGKIIKFCVQEAKPLDQLSLEELKAIHEDIGEDIFEILSVEKSVEHKDHVGA 287
H ++ + + V E + L + +E + E GE++ +L ++G
Sbjct: 378 GRDRAHHLLEQCCQRAVAEQRHLRAVLGDEPQVSAELSGEELDRLLDPAH------YLG- 430
Query: 288 TAPSQVQ 294
A V
Sbjct: 431 QARVWVA 437
>d1jswa_ a.127.1.1 (A:) L-aspartate ammonia lyase {Escherichia coli
[TaxId: 562]}
Length = 459
Score = 104 bits (260), Expect = 7e-26
Identities = 44/224 (19%), Positives = 83/224 (37%), Gaps = 14/224 (6%)
Query: 53 HPIDRYRTTELLHFDSPSGNSL-DSISDRDFIIEFLSHCSITIMHLSRISEEFIIFMNPQ 111
P+ + E+ F L ++ SD + + +S+I + + +
Sbjct: 246 SPLAVKKLAEVTGFPCVPAEDLIEATSDCGAYVMVHGALKRLAVKMSKICNDLRLLSSGP 305
Query: 112 FDYVSLPD--SLLTGSSIMPQKKNPDILELIRGKTGRVYGNLFNMLTIMKSQPLAYNKDM 169
++ + L GSSIMP K NP + E++ +V GN + ++ L N
Sbjct: 306 RAGLNEINLPELQAGSSIMPAKVNPVVPEVVNQVCFKVIGNDTTVTMAAEAGQLQLNVME 365
Query: 170 QECKQPLVDSIETL-NMCLTAFKLILDNVKFNTGRMYVSAGEGFSIATDIADYLAKKKIP 228
Q + +S+ L N C + ++ + N + I YL P
Sbjct: 366 PVIGQAMFESVHILTNACYNLLEKCINGITANKEVCE----GYVYNSIGIVTYLN----P 417
Query: 229 FRSCHEIVGKIIKFCVQEAKPLDQLSLEELKAIHEDIGEDIFEI 272
F H + K C + K + ++ LE ++ +DIF +
Sbjct: 418 FIG-HHNGDIVGKICAETGKSVREVVLERGLLTEAEL-DDIFSV 459
>d1q5na_ a.127.1.1 (A:) 3-carboxy-cis,cis-muconate cycloisomerase
(CMLE) {Acinetobacter calcoaceticus [TaxId: 471]}
Length = 444
Score = 92.8 bits (229), Expect = 9e-22
Identities = 41/219 (18%), Positives = 77/219 (35%), Gaps = 13/219 (5%)
Query: 80 RDFIIEFLSHCSITIMHLSRISEEFIIFMNPQFDYVSLP-DSLLTGSSIMPQKKNPDILE 138
RD I+E S I ++ +++ ++ + M + V P GSS MP K+NP
Sbjct: 229 RDRIVEIASVLGIITGNVGKMARDWSLMMQTEIAEVFEPTAKGRGGSSTMPHKRNPVAAA 288
Query: 139 LIRGKTGRVYGNLFNMLTIMKSQPLAYNKDMQECKQPLVDSIETLNMCLTAFKLILDNVK 198
+ RV + ++ M + L + + L +L ++
Sbjct: 289 SVLAAANRVPALMSSIYQSMVQEHERSLGAWHAEWLSLPEIFQLTAGALERTLDVLKGME 348
Query: 199 FNTGRM--YVSAGEGFSIATDIADYLAKKKIPFRSCHEIVGKIIKFCVQEAKPLDQLSLE 256
N M + G +A + LA + + H +V K V E K L + +
Sbjct: 349 VNAENMHQNIECTHGLIMAEAVMMALA-PHMGRLNAHHVVEAACKTAVAEQKHLKDI-IS 406
Query: 257 ELKAIHEDIGEDIF-EILSVEKSVEHKDHVGATAPSQVQ 294
++ + + EI E ++G Q+
Sbjct: 407 QVDEVKQYFNPSQLDEIFKPES------YLG-NIQDQID 438
>d1t9ka_ c.124.1.5 (A:) Probable methylthioribose-1-phosphate
isomerase TM0911 {Thermotoga maritima [TaxId: 2336]}
Length = 340
Score = 30.9 bits (69), Expect = 0.19
Identities = 14/55 (25%), Positives = 23/55 (41%), Gaps = 2/55 (3%)
Query: 70 SGNSLDSISDRDFIIEFLSHCSITIMHLSRISEEFIIFMNPQFDYVSLPDSLLTG 124
S S + IE +T +RI+ E + +NP FD ++L+T
Sbjct: 267 STIDPTIRSGEEIPIEERRPEEVTHCGGNRIAPEGVKVLNPAFDVT--ENTLITA 319
>d1t5oa_ c.124.1.5 (A:) Putative eIF-2B delta-subunit {Archaeon
Archaeoglobus fulgidus [TaxId: 2234]}
Length = 340
Score = 29.0 bits (64), Expect = 0.67
Identities = 11/56 (19%), Positives = 19/56 (33%), Gaps = 2/56 (3%)
Query: 69 PSGNSLDSISDRDFIIEFLSHCSITIMHLSRISEEFIIFMNPQFDYVSLPDSLLTG 124
P + +D +IE + +I+ + NP FD P +T
Sbjct: 265 PKATFDWERTAKDVVIEERPREELIFCGKRQIAPLNVKVYNPAFDPT--PLENVTA 318
>d2v8qa1 d.129.6.2 (A:396-548) 5'-AMP-activated protein kinase
catalytic subunit alpha-1, AMPK1 {Rat (Rattus
norvegicus) [TaxId: 10116]}
Length = 153
Score = 27.7 bits (61), Expect = 1.2
Identities = 14/82 (17%), Positives = 26/82 (31%), Gaps = 2/82 (2%)
Query: 20 SGDGGESGDGGKSEGKSGGGSESGDENGGGGTTHPIDRYRTTELLHFDSPSGNSLDSISD 79
+ E+ G + +SG S + L + +S ++
Sbjct: 72 DDEITEAKSGTATPQRSGSISNYRSCQRSDSDAEAQGKPSEVSLTSSVTSLDSSPVDVAP 131
Query: 80 RD--FIIEFLSHCSITIMHLSR 99
R IEF C+ I L++
Sbjct: 132 RPGSHTIEFFEMCANLIKILAQ 153
>d1u09a_ e.8.1.4 (A:) Viral RNA polymerase {Foot-and-mouth disease
virus [TaxId: 12110]}
Length = 476
Score = 28.4 bits (63), Expect = 1.3
Identities = 25/176 (14%), Positives = 52/176 (29%), Gaps = 16/176 (9%)
Query: 150 NLFNMLTIMKSQPLAYNKDMQECKQPLVDSIETLNMCL---TAFKLILDNVKFNTGRMYV 206
L N +++ + I T+ + A + + V+ +T M
Sbjct: 277 TLVNTEHAYENKRITVEG-GMPSGCSATSIINTILNNIYVLYALRRHYEGVELDTYTMIS 335
Query: 207 SAGEGFSIATDIADYLAKKKIPFRSCHEIVGKIIKFCVQEAKPLDQLSLEELK---AIHE 263
G+ +A+D K F+S + + K + LK +
Sbjct: 336 -YGDDIVVASDYDLDFEALKPHFKSLGQTITPADKSDKGFVLGHSITDVTFLKRHFHMDY 394
Query: 264 DIG--------EDIFEILSVEKSVEHKDHVGATAPSQVQHSVDVFENFVKDMTDLL 311
G + + ILS + ++ + + A V D + + L
Sbjct: 395 GTGFYKPVMASKTLEAILSFARRGTIQEKLISVAGLAVHSGPDEYRRLFEPFQGLF 450
>d1gvna_ a.8.2.1 (A:) Plasmid maintenance system epsilon/zeta,
antidote epsilon subunit {Streptococcus pyogenes [TaxId:
1314]}
Length = 88
Score = 26.5 bits (58), Expect = 1.7
Identities = 9/14 (64%), Positives = 11/14 (78%)
Query: 250 LDQLSLEELKAIHE 263
L SLEEL+A+HE
Sbjct: 56 LFDYSLEELQAVHE 69
>d1mlaa1 c.19.1.1 (A:3-127,A:198-307) Catalytic domain of
malonyl-CoA ACP transacylase FabD {Escherichia coli
[TaxId: 562]}
Length = 235
Score = 26.7 bits (58), Expect = 3.4
Identities = 11/62 (17%), Positives = 18/62 (29%), Gaps = 3/62 (4%)
Query: 164 AYNKDMQECKQPLVDSIETLNMCLTAFKLILDNVKFNTGRMYVSA---GEGFSIATDIAD 220
K MQE + + + L + FN + V + + I D
Sbjct: 114 MRGKFMQEAVPEVPSHCALMKPAADKLAVELAKITFNAPTVPVVNNVDVKCETNGDAIRD 173
Query: 221 YL 222
L
Sbjct: 174 AL 175
>d1czan3 c.55.1.3 (N:466-670) Mammalian type I hexokinase {Human
(Homo sapiens) [TaxId: 9606]}
Length = 205
Score = 26.0 bits (57), Expect = 5.4
Identities = 18/125 (14%), Positives = 44/125 (35%), Gaps = 18/125 (14%)
Query: 177 VDSIETLNMCLTAFKLILDNVKFNTGRMYVSAGEGFSI--------ATDIADYLAKKKIP 228
L++ T F+++L ++ R + ++I ++ D++
Sbjct: 60 NGDFLALDLGGTNFRVLLVKIRSGKKRTVEMHNKIYAIPIEIMQGTGEELFDHIVSCISD 119
Query: 229 FRSCHEIVGKIIKFCVQEAKPLDQLSLEELKAIH--------EDIGEDIFEILSVEKSVE 280
F I G + + P Q SL+ I + +G D+ +L +++
Sbjct: 120 FLDYMGIKGPRMPLGFTFSFPCQQTSLDAGILITWTKGFKATDCVGHDVVTLL--RDAIK 177
Query: 281 HKDHV 285
++
Sbjct: 178 RREEF 182
>d1ju2a2 d.16.1.1 (A:294-463) Hydroxynitrile lyase {Almond (Prunus
dulcis) [TaxId: 3755]}
Length = 170
Score = 25.8 bits (56), Expect = 5.8
Identities = 7/50 (14%), Positives = 13/50 (26%), Gaps = 3/50 (6%)
Query: 52 THPIDRYRTTELL---HFDSPSGNSLDSISDRDFIIEFLSHCSITIMHLS 98
T + Y+ +L F+ +D F + H
Sbjct: 119 TDALKPYKVEDLPGVEGFNILGIPLPKDQTDDAAFETFCRESVASYWHYH 168
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.316 0.136 0.393
Gapped
Lambda K H
0.267 0.0659 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,192,291
Number of extensions: 57464
Number of successful extensions: 156
Number of sequences better than 10.0: 1
Number of HSP's gapped: 131
Number of HSP's successfully gapped: 26
Length of query: 314
Length of database: 2,407,596
Length adjustment: 85
Effective length of query: 229
Effective length of database: 1,240,546
Effective search space: 284085034
Effective search space used: 284085034
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 53 (24.3 bits)