BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy1503
(265 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2CBZ|A Chain A, Structure Of The Human Multidrug Resistance Protein 1
Nucleotide Binding Domain 1
Length = 237
Score = 166 bits (421), Expect = 9e-42, Method: Compositional matrix adjust.
Identities = 80/169 (47%), Positives = 112/169 (66%), Gaps = 1/169 (0%)
Query: 89 VSLDNVTAQWSLQNADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKV 148
+++ N T W+ + TLN ++ + L ++G +G GK+SLL +L E+ G V
Sbjct: 4 ITVRNATFTWARSDPP-TLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHV 62
Query: 149 SLGGTVSYASQEPWIFAATIRQNILFGLPYLRRRYADVIRVCALQDDFDSLPNGDFTVVG 208
++ G+V+Y Q+ WI ++R+NILFG Y VI+ CAL D + LP+GD T +G
Sbjct: 63 AIKGSVAYVPQQAWIQNDSLRENILFGCQLEEPYYRSVIQACALLPDLEILPSGDRTEIG 122
Query: 209 ERGASLSGGQKARINLARAVYKNADIYLLDDPLSAVDMHVGKHLFEDCI 257
E+G +LSGGQK R++LARAVY NADIYL DDPLSAVD HVGKH+FE+ I
Sbjct: 123 EKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFENVI 171
>pdb|2PZG|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A
Monomer
pdb|2PZG|B Chain B, Minimal Human Cftr First Nucleotide Binding Domain As A
Monomer
Length = 241
Score = 157 bits (397), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 76/170 (44%), Positives = 106/170 (62%), Gaps = 1/170 (0%)
Query: 88 HVSLDNVTAQWSLQNADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGK 147
V ++NVTA W + L ++ + QL + G+ GAGKTSLL +I+ EL S GK
Sbjct: 18 EVVMENVTAFWE-EGGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGK 76
Query: 148 VSLGGTVSYASQEPWIFAATIRQNILFGLPYLRRRYADVIRVCALQDDFDSLPNGDFTVV 207
+ G +S+ SQ WI TI++NI+FG+ Y RY VI+ C L++D D V+
Sbjct: 77 IKHSGRISFCSQFSWIMPGTIKENIIFGVSYDEYRYRSVIKACQLEEDISKFAEKDNIVL 136
Query: 208 GERGASLSGGQKARINLARAVYKNADIYLLDDPLSAVDMHVGKHLFEDCI 257
GE G +LSGGQ+ARI+LARAVYK+AD+YLLD P +D+ K +FE C+
Sbjct: 137 GEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCV 186
>pdb|2PZE|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer
pdb|2PZE|B Chain B, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer
Length = 229
Score = 157 bits (397), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 76/170 (44%), Positives = 106/170 (62%), Gaps = 1/170 (0%)
Query: 88 HVSLDNVTAQWSLQNADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGK 147
V ++NVTA W + L ++ + QL + G+ GAGKTSLL +I+ EL S GK
Sbjct: 6 EVVMENVTAFWE-EGGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGK 64
Query: 148 VSLGGTVSYASQEPWIFAATIRQNILFGLPYLRRRYADVIRVCALQDDFDSLPNGDFTVV 207
+ G +S+ SQ WI TI++NI+FG+ Y RY VI+ C L++D D V+
Sbjct: 65 IKHSGRISFCSQFSWIMPGTIKENIIFGVSYDEYRYRSVIKACQLEEDISKFAEKDNIVL 124
Query: 208 GERGASLSGGQKARINLARAVYKNADIYLLDDPLSAVDMHVGKHLFEDCI 257
GE G +LSGGQ+ARI+LARAVYK+AD+YLLD P +D+ K +FE C+
Sbjct: 125 GEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCV 174
>pdb|2PZF|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer With Delta F508
pdb|2PZF|B Chain B, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer With Delta F508
Length = 228
Score = 150 bits (378), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 75/170 (44%), Positives = 105/170 (61%), Gaps = 2/170 (1%)
Query: 88 HVSLDNVTAQWSLQNADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGK 147
V ++NVTA W + L ++ + QL + G+ GAGKTSLL +I+ EL S GK
Sbjct: 6 EVVMENVTAFWE-EGGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGK 64
Query: 148 VSLGGTVSYASQEPWIFAATIRQNILFGLPYLRRRYADVIRVCALQDDFDSLPNGDFTVV 207
+ G +S+ SQ WI TI++NI+ G+ Y RY VI+ C L++D D V+
Sbjct: 65 IKHSGRISFCSQFSWIMPGTIKENII-GVSYDEYRYRSVIKACQLEEDISKFAEKDNIVL 123
Query: 208 GERGASLSGGQKARINLARAVYKNADIYLLDDPLSAVDMHVGKHLFEDCI 257
GE G +LSGGQ+ARI+LARAVYK+AD+YLLD P +D+ K +FE C+
Sbjct: 124 GEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCV 173
>pdb|1R0Z|A Chain A, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
pdb|1R0Z|B Chain B, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
pdb|1R0Z|C Chain C, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
pdb|1R0Z|D Chain D, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
Length = 286
Score = 148 bits (374), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 69/151 (45%), Positives = 97/151 (64%)
Query: 107 LNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSLGGTVSYASQEPWIFAA 166
L +++ + ++ I G+ G+GKTSLL +IL EL S G + G VS+ SQ WI
Sbjct: 54 LKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSGRVSFCSQFSWIMPG 113
Query: 167 TIRQNILFGLPYLRRRYADVIRVCALQDDFDSLPNGDFTVVGERGASLSGGQKARINLAR 226
TI++NI+FG+ Y RY V++ C LQ D D TV+GE G +LSGGQ+ARI+LAR
Sbjct: 114 TIKENIIFGVSYDEYRYKSVVKACQLQQDITKFAEQDNTVLGEGGVTLSGGQRARISLAR 173
Query: 227 AVYKNADIYLLDDPLSAVDMHVGKHLFEDCI 257
AVYK+AD+YLLD P +D+ + +FE C+
Sbjct: 174 AVYKDADLYLLDSPFGYLDVFTEEQVFESCV 204
>pdb|1Q3H|A Chain A, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1Q3H|B Chain B, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1Q3H|C Chain C, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1Q3H|D Chain D, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1R0W|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0W|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0W|C Chain C, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0W|D Chain D, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0X|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0X|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0X|C Chain C, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0X|D Chain D, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0Y|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R0Y|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R0Y|C Chain C, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R0Y|D Chain D, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R10|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp, I4122
Space Group
pdb|1R10|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp, I4122
Space Group
Length = 286
Score = 148 bits (374), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 69/151 (45%), Positives = 97/151 (64%)
Query: 107 LNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSLGGTVSYASQEPWIFAA 166
L +++ + ++ I G+ G+GKTSLL +IL EL S G + G VS+ SQ WI
Sbjct: 54 LKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSGRVSFCSQFSWIMPG 113
Query: 167 TIRQNILFGLPYLRRRYADVIRVCALQDDFDSLPNGDFTVVGERGASLSGGQKARINLAR 226
TI++NI+FG+ Y RY V++ C LQ D D TV+GE G +LSGGQ+ARI+LAR
Sbjct: 114 TIKENIIFGVSYDEYRYKSVVKACQLQQDITKFAEQDNTVLGEGGVTLSGGQRARISLAR 173
Query: 227 AVYKNADIYLLDDPLSAVDMHVGKHLFEDCI 257
AVYK+AD+YLLD P +D+ + +FE C+
Sbjct: 174 AVYKDADLYLLDSPFGYLDVFTEEQVFESCV 204
>pdb|1XMI|A Chain A, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|B Chain B, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|C Chain C, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|D Chain D, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|E Chain E, Crystal Structure Of Human F508a Nbd1 Domain With Atp
Length = 291
Score = 147 bits (370), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 77/179 (43%), Positives = 107/179 (59%), Gaps = 5/179 (2%)
Query: 79 NSVHSNGKGHVSLDNVTAQWSLQNADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIIL 138
N SNG +S N +SL + L ++ + QL + G+ GAGKTSLL +I+
Sbjct: 31 NRKTSNGDDSLSFSN----FSLLGTPV-LKDINFKIERGQLLAVAGSTGAGKTSLLMMIM 85
Query: 139 NELRISSGKVSLGGTVSYASQEPWIFAATIRQNILFGLPYLRRRYADVIRVCALQDDFDS 198
EL S GK+ G +S+ SQ WI TI++NI+ G+ Y RY VI+ C L++D
Sbjct: 86 GELEPSEGKIKHSGRISFCSQFSWIMPGTIKENIIAGVSYDEYRYRSVIKACQLEEDISK 145
Query: 199 LPNGDFTVVGERGASLSGGQKARINLARAVYKNADIYLLDDPLSAVDMHVGKHLFEDCI 257
D V+GE G +LSGGQ+ARI+LARAVYK+AD+YLLD P +D+ K +FE C+
Sbjct: 146 FAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCV 204
>pdb|1XF9|A Chain A, Structure Of Nbd1 From Murine Cftr- F508s Mutant
pdb|1XF9|B Chain B, Structure Of Nbd1 From Murine Cftr- F508s Mutant
pdb|1XF9|C Chain C, Structure Of Nbd1 From Murine Cftr- F508s Mutant
pdb|1XF9|D Chain D, Structure Of Nbd1 From Murine Cftr- F508s Mutant
Length = 283
Score = 145 bits (366), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 68/151 (45%), Positives = 96/151 (63%)
Query: 107 LNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSLGGTVSYASQEPWIFAA 166
L +++ + ++ I G+ G+GKTSLL +IL EL S G + G VS+ SQ WI
Sbjct: 54 LKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSGRVSFCSQFSWIMPG 113
Query: 167 TIRQNILFGLPYLRRRYADVIRVCALQDDFDSLPNGDFTVVGERGASLSGGQKARINLAR 226
TI++NI+ G+ Y RY V++ C LQ D D TV+GE G +LSGGQ+ARI+LAR
Sbjct: 114 TIKENIISGVSYDEYRYKSVVKACQLQQDITKFAEQDNTVLGEGGVTLSGGQRARISLAR 173
Query: 227 AVYKNADIYLLDDPLSAVDMHVGKHLFEDCI 257
AVYK+AD+YLLD P +D+ + +FE C+
Sbjct: 174 AVYKDADLYLLDSPFGYLDVFTEEQVFESCV 204
>pdb|1XFA|A Chain A, Structure Of Nbd1 From Murine Cftr- F508r Mutant
pdb|1XFA|B Chain B, Structure Of Nbd1 From Murine Cftr- F508r Mutant
Length = 283
Score = 145 bits (365), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 68/151 (45%), Positives = 96/151 (63%)
Query: 107 LNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSLGGTVSYASQEPWIFAA 166
L +++ + ++ I G+ G+GKTSLL +IL EL S G + G VS+ SQ WI
Sbjct: 54 LKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSGRVSFCSQFSWIMPG 113
Query: 167 TIRQNILFGLPYLRRRYADVIRVCALQDDFDSLPNGDFTVVGERGASLSGGQKARINLAR 226
TI++NI+ G+ Y RY V++ C LQ D D TV+GE G +LSGGQ+ARI+LAR
Sbjct: 114 TIKENIIRGVSYDEYRYKSVVKACQLQQDITKFAEQDNTVLGEGGVTLSGGQRARISLAR 173
Query: 227 AVYKNADIYLLDDPLSAVDMHVGKHLFEDCI 257
AVYK+AD+YLLD P +D+ + +FE C+
Sbjct: 174 AVYKDADLYLLDSPFGYLDVFTEEQVFESCV 204
>pdb|2BBO|A Chain A, Human Nbd1 With Phe508
Length = 291
Score = 144 bits (364), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 68/151 (45%), Positives = 96/151 (63%)
Query: 107 LNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSLGGTVSYASQEPWIFAA 166
L ++ + QL + G+ GAGKTSLL +I+ EL S GK+ G +S+ SQ WI
Sbjct: 54 LKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGRISFCSQFSWIMPG 113
Query: 167 TIRQNILFGLPYLRRRYADVIRVCALQDDFDSLPNGDFTVVGERGASLSGGQKARINLAR 226
TI++NI+FG+ Y RY VI+ C L++D D V+GE G +LS GQ+A+I+LAR
Sbjct: 114 TIKENIIFGVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSEGQQAKISLAR 173
Query: 227 AVYKNADIYLLDDPLSAVDMHVGKHLFEDCI 257
AVYK+AD+YLLD P +D+ K +FE C+
Sbjct: 174 AVYKDADLYLLDSPFGYLDVLTEKEIFESCV 204
>pdb|2BBS|A Chain A, Human Deltaf508 Nbd1 With Three Solubilizing Mutations
pdb|2BBS|B Chain B, Human Deltaf508 Nbd1 With Three Solubilizing Mutations
Length = 290
Score = 144 bits (363), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 77/179 (43%), Positives = 107/179 (59%), Gaps = 6/179 (3%)
Query: 79 NSVHSNGKGHVSLDNVTAQWSLQNADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIIL 138
N SNG +S N +SL + L ++ + QL + G+ GAGKTSLL +I+
Sbjct: 31 NRKTSNGDDSLSFSN----FSLLGTPV-LKDINFKIERGQLLAVAGSTGAGKTSLLMMIM 85
Query: 139 NELRISSGKVSLGGTVSYASQEPWIFAATIRQNILFGLPYLRRRYADVIRVCALQDDFDS 198
EL S GK+ G +S+ SQ WI TI++NI+ G+ Y RY VI+ C L++D
Sbjct: 86 GELEPSEGKIKHSGRISFCSQNSWIMPGTIKENII-GVSYDEYRYRSVIKACQLEEDISK 144
Query: 199 LPNGDFTVVGERGASLSGGQKARINLARAVYKNADIYLLDDPLSAVDMHVGKHLFEDCI 257
D V+GE G +LSGGQ+ARI+LARAVYK+AD+YLLD P +D+ K +FE C+
Sbjct: 145 FAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCV 203
>pdb|2BBT|A Chain A, Human Deltaf508 Nbd1 With Two Solublizing Mutations.
pdb|2BBT|B Chain B, Human Deltaf508 Nbd1 With Two Solublizing Mutations
Length = 290
Score = 143 bits (360), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 69/151 (45%), Positives = 96/151 (63%), Gaps = 1/151 (0%)
Query: 107 LNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSLGGTVSYASQEPWIFAA 166
L ++ + QL + G+ GAGKTSLL +I+ EL S GK+ G +S+ SQ WI
Sbjct: 54 LKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGRISFCSQNSWIMPG 113
Query: 167 TIRQNILFGLPYLRRRYADVIRVCALQDDFDSLPNGDFTVVGERGASLSGGQKARINLAR 226
TI++NI+ G+ Y RY VI+ C L++D D V+GE G +LSGGQ+ARI+LAR
Sbjct: 114 TIKENII-GVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLAR 172
Query: 227 AVYKNADIYLLDDPLSAVDMHVGKHLFEDCI 257
AVYK+AD+YLLD P +D+ K +FE C+
Sbjct: 173 AVYKDADLYLLDSPFGYLDVLTEKEIFESCV 203
>pdb|3SI7|A Chain A, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
pdb|3SI7|B Chain B, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
pdb|3SI7|C Chain C, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
pdb|3SI7|D Chain D, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
Length = 285
Score = 141 bits (356), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 68/151 (45%), Positives = 96/151 (63%), Gaps = 1/151 (0%)
Query: 107 LNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSLGGTVSYASQEPWIFAA 166
L +++ + ++ I G+ G+GKTSLL +IL EL S G + G VS+ SQ WI
Sbjct: 54 LKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSGRVSFCSQFSWIMPG 113
Query: 167 TIRQNILFGLPYLRRRYADVIRVCALQDDFDSLPNGDFTVVGERGASLSGGQKARINLAR 226
TI++NI+ G+ Y RY V++ C LQ D D TV+GE G +LSGGQ+ARI+LAR
Sbjct: 114 TIKENII-GVSYDEYRYKSVVKACQLQQDITKFAEQDNTVLGEGGVTLSGGQRARISLAR 172
Query: 227 AVYKNADIYLLDDPLSAVDMHVGKHLFEDCI 257
AVYK+AD+YLLD P +D+ + +FE C+
Sbjct: 173 AVYKDADLYLLDSPFGYLDVFTEEQVFESCV 203
>pdb|1XMJ|A Chain A, Crystal Structure Of Human Deltaf508 Human Nbd1 Domain
With Atp
Length = 290
Score = 137 bits (346), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 67/151 (44%), Positives = 95/151 (62%), Gaps = 1/151 (0%)
Query: 107 LNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSLGGTVSYASQEPWIFAA 166
L ++ + QL + G+ GAGKTSLL +I+ EL S GK+ G +S+ SQ WI
Sbjct: 54 LKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGRISFCSQFSWIMPG 113
Query: 167 TIRQNILFGLPYLRRRYADVIRVCALQDDFDSLPNGDFTVVGERGASLSGGQKARINLAR 226
TI++NI+ G+ Y RY VI+ C L++D D V+GE G +LS GQ+A+I+LAR
Sbjct: 114 TIKENII-GVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSEGQQAKISLAR 172
Query: 227 AVYKNADIYLLDDPLSAVDMHVGKHLFEDCI 257
AVYK+AD+YLLD P +D+ K +FE C+
Sbjct: 173 AVYKDADLYLLDSPFGYLDVLTEKEIFESCV 203
>pdb|4F4C|A Chain A, The Crystal Structure Of The Multi-Drug Transporter
Length = 1321
Score = 92.4 bits (228), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 55/176 (31%), Positives = 94/176 (53%), Gaps = 18/176 (10%)
Query: 86 KGHVSLDNVTAQWSLQNADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISS 145
KG ++++NV + + L +++ Q ++G+ G GK++++ ++L +
Sbjct: 413 KGDITVENVHFTYPSRPDVPILRGMNLRVNAGQTVALVGSSGCGKSTIISLLLRYYDVLK 472
Query: 146 GKVSLGGT-------------VSYASQEPWIFAATIRQNILFGLPYLRRRYADVIRVCAL 192
GK+++ G V+ SQEP +F TI +NI G + R +++ C +
Sbjct: 473 GKITIDGVDVRDINLEFLRKNVAVVSQEPALFNCTIEENISLGKEGITRE--EMVAACKM 530
Query: 193 QDD---FDSLPNGDFTVVGERGASLSGGQKARINLARAVYKNADIYLLDDPLSAVD 245
+ +LPNG T+VG+RG LSGGQK RI +ARA+ +N I LLD+ SA+D
Sbjct: 531 ANAEKFIKTLPNGYNTLVGDRGTQLSGGQKQRIAIARALVRNPKILLLDEATSALD 586
Score = 82.8 bits (203), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 60/199 (30%), Positives = 97/199 (48%), Gaps = 21/199 (10%)
Query: 77 KINSVHSNGK-----GHVSLDNVTAQWSLQNADLTLNAVSITFKPKQLACIIGAIGAGKT 131
KI+S+ G+ G V NV + + L +S + +P Q ++G G GK+
Sbjct: 1060 KIDSLSLAGEKKKLYGKVIFKNVRFAYPERPEIEILKGLSFSVEPGQTLALVGPSGCGKS 1119
Query: 132 SLLHIILNELRISSGKVSLGGT-------------VSYASQEPWIFAATIRQNILFGLPY 178
+++ ++ G++ + G+ ++ SQEP +F +I +NI++GL
Sbjct: 1120 TVVALLERFYDTLGGEIFIDGSEIKTLNPEHTRSQIAIVSQEPTLFDCSIAENIIYGLDP 1179
Query: 179 LRRRYADV---IRVCALQDDFDSLPNGDFTVVGERGASLSGGQKARINLARAVYKNADIY 235
A V R+ + + LP G T VG+RG LSGGQK RI +ARA+ +N I
Sbjct: 1180 SSVTMAQVEEAARLANIHNFIAELPEGFETRVGDRGTQLSGGQKQRIAIARALVRNPKIL 1239
Query: 236 LLDDPLSAVDMHVGKHLFE 254
LLD+ SA+D K + E
Sbjct: 1240 LLDEATSALDTESEKVVQE 1258
>pdb|3QF4|A Chain A, Crystal Structure Of A Heterodimeric Abc Transporter In
Its Inward- Facing Conformation
Length = 587
Score = 88.2 bits (217), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 59/196 (30%), Positives = 102/196 (52%), Gaps = 18/196 (9%)
Query: 84 NGKGHVSLDNVTAQWSLQNADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHII------ 137
N +G VS +NV ++ +N D L+ V+ + KP L ++G G+GK++L+++I
Sbjct: 337 NVEGSVSFENVEFRY-FENTDPVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDP 395
Query: 138 ------LNELRISSGKVS-LGGTVSYASQEPWIFAATIRQNILFGLP-YLRRRYADVIRV 189
++EL + + K+ L G +S QE +F+ TI++N+ +G + ++
Sbjct: 396 ERGRVEVDELDVRTVKLKDLRGHISAVPQETVLFSGTIKENLKWGREDATDDEIVEAAKI 455
Query: 190 CALQDDFDSLPNGDFTVVGERGASLSGGQKARINLARAVYKNADIYLLDDPLSAVDMHVG 249
+ D SLP G + V G + SGGQK R+++ARA+ K + +LDD S+VD
Sbjct: 456 AQIHDFIISLPEGYDSRVERGGRNFSGGQKQRLSIARALVKKPKVLILDDCTSSVDPITE 515
Query: 250 KHLFEDC---ISGCLT 262
K + + GC T
Sbjct: 516 KRILDGLKRYTKGCTT 531
>pdb|2HYD|A Chain A, Multidrug Abc Transporter Sav1866
pdb|2HYD|B Chain B, Multidrug Abc Transporter Sav1866
pdb|2ONJ|A Chain A, Structure Of The Multidrug Abc Transporter Sav1866 From S.
Aureus In Complex With Amp-Pnp
pdb|2ONJ|B Chain B, Structure Of The Multidrug Abc Transporter Sav1866 From S.
Aureus In Complex With Amp-Pnp
pdb|4A82|A Chain A, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|B Chain B, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|C Chain C, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|D Chain D, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966
Length = 578
Score = 84.0 bits (206), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 67/224 (29%), Positives = 112/224 (50%), Gaps = 29/224 (12%)
Query: 43 MALFCTLT-SFIFFGGRLSTDRVLNFLLLGEHEPRKINSVHSN----GKGHVSLDNVTAQ 97
+A F TLT SF S DRV F L+ E K N V + +G + +D+V+ Q
Sbjct: 298 VASFTTLTQSF------ASMDRV--FQLIDEDYDIK-NGVGAQPIEIKQGRIDIDHVSFQ 348
Query: 98 WSLQNADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKV--------- 148
++ A + L ++++ + + +G G GK++L+++I ++SG++
Sbjct: 349 YNDNEAPI-LKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKD 407
Query: 149 ----SLGGTVSYASQEPWIFAATIRQNILFGLPYLR-RRYADVIRVCALQDDFDSLPNGD 203
SL + Q+ +F+ T+++NIL G P + ++ D +LP G
Sbjct: 408 FLTGSLRNQIGLVQQDNILFSDTVKENILLGRPTATDEEVVEAAKMANAHDFIMNLPQGY 467
Query: 204 FTVVGERGASLSGGQKARINLARAVYKNADIYLLDDPLSAVDMH 247
T VGERG LSGGQK R+++AR N I +LD+ SA+D+
Sbjct: 468 DTEVGERGVKLSGGQKQRLSIARIFLNNPPILILDEATSALDLE 511
>pdb|4AYT|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10
pdb|4AYX|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10 (Rod Form B)
pdb|3ZDQ|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10 (nucleotide-free Form)
Length = 595
Score = 82.4 bits (202), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 58/192 (30%), Positives = 94/192 (48%), Gaps = 24/192 (12%)
Query: 86 KGHVSLDNVTAQWSLQNADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISS 145
+G + NV + + S++ + ++G G+GK+++L ++L +S
Sbjct: 339 QGALEFKNVHFAYPARPEVPIFQDFSLSIPSGSVTALVGPSGSGKSTVLSLLLRLYDPAS 398
Query: 146 GKVSLGG-------------TVSYASQEPWIFAATIRQNILFG-------LPYLRRRYAD 185
G +SL G + SQEP +F+ +I +NI +G +R A+
Sbjct: 399 GTISLDGHDIRQLNPVWLRSKIGTVSQEPILFSCSIAENIAYGADDPSSVTAEEIQRVAE 458
Query: 186 VIRVCALQDDFDSLPNGDFTVVGERGASLSGGQKARINLARAVYKNADIYLLDDPLSAVD 245
V A +F P G TVVGE+G LSGGQK RI +ARA+ KN I LLD+ SA+D
Sbjct: 459 VANAVAFIRNF---PQGFNTVVGEKGVLLSGGQKQRIAIARALLKNPKILLLDEATSALD 515
Query: 246 MHVGKHLFEDCI 257
++L ++ +
Sbjct: 516 AE-NEYLVQEAL 526
>pdb|4AYW|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10 (plate Form)
Length = 619
Score = 82.0 bits (201), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 58/192 (30%), Positives = 94/192 (48%), Gaps = 24/192 (12%)
Query: 86 KGHVSLDNVTAQWSLQNADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISS 145
+G + NV + + S++ + ++G G+GK+++L ++L +S
Sbjct: 370 QGALEFKNVHFAYPARPEVPIFQDFSLSIPSGSVTALVGPSGSGKSTVLSLLLRLYDPAS 429
Query: 146 GKVSLGG-------------TVSYASQEPWIFAATIRQNILFGLPYLR-------RRYAD 185
G +SL G + SQEP +F+ +I +NI +G +R A+
Sbjct: 430 GTISLDGHDIRQLNPVWLRSKIGTVSQEPILFSCSIAENIAYGADDPSSVTAEEIQRVAE 489
Query: 186 VIRVCALQDDFDSLPNGDFTVVGERGASLSGGQKARINLARAVYKNADIYLLDDPLSAVD 245
V A +F P G TVVGE+G LSGGQK RI +ARA+ KN I LLD+ SA+D
Sbjct: 490 VANAVAFIRNF---PQGFNTVVGEKGVLLSGGQKQRIAIARALLKNPKILLLDEATSALD 546
Query: 246 MHVGKHLFEDCI 257
++L ++ +
Sbjct: 547 AE-NEYLVQEAL 557
>pdb|3NH6|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Apo Structure)
pdb|3NH9|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Atp Bound
Structure)
pdb|3NHA|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Adp Mg Bound
Structure)
pdb|3NHB|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Adp Bound
Structure)
Length = 306
Score = 81.3 bits (199), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 58/174 (33%), Positives = 85/174 (48%), Gaps = 16/174 (9%)
Query: 86 KGHVSLDNVTAQWSLQNADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISS 145
KG + +NV +S + TL VS T P Q ++G GAGK+++L ++ ISS
Sbjct: 51 KGRIEFENV--HFSYADGRETLQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFYDISS 108
Query: 146 GKVSLGGT----VSYAS---------QEPWIFAATIRQNILFG-LPYLRRRYADVIRVCA 191
G + + G V+ AS Q+ +F TI NI +G + +
Sbjct: 109 GCIRIDGQDISQVTQASLRSHIGVVPQDTVLFNDTIADNIRYGRVTAGNDEVEAAAQAAG 168
Query: 192 LQDDFDSLPNGDFTVVGERGASLSGGQKARINLARAVYKNADIYLLDDPLSAVD 245
+ D + P G T VGERG LSGG+K R+ +AR + K I LLD+ SA+D
Sbjct: 169 IHDAIMAFPEGYRTQVGERGLKLSGGEKQRVAIARTILKAPGIILLDEATSALD 222
>pdb|3G5U|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G5U|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
Length = 1284
Score = 80.1 bits (196), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 56/187 (29%), Positives = 88/187 (47%), Gaps = 21/187 (11%)
Query: 73 HEPRKINSVHSNGKGHVSLDNVTAQWSLQNADLTLNAVSITFKPKQLACIIGAIGAGKTS 132
H+P I +G++ N+ + + L +++ K Q ++G G GK++
Sbjct: 379 HKPDNI-------QGNLEFKNIHFSYPSRKEVQILKGLNLKVKSGQTVALVGNSGCGKST 431
Query: 133 LLHIILNELRISSGKVSLGGT-------------VSYASQEPWIFAATIRQNILFGLPYL 179
+ ++ G VS+ G + SQEP +FA TI +NI +G +
Sbjct: 432 TVQLMQRLYDPLDGMVSIDGQDIRTINVRYLREIIGVVSQEPVLFATTIAENIRYGREDV 491
Query: 180 RR-RYADVIRVCALQDDFDSLPNGDFTVVGERGASLSGGQKARINLARAVYKNADIYLLD 238
++ D LP+ T+VGERGA LSGGQK RI +ARA+ +N I LLD
Sbjct: 492 TMDEIEKAVKEANAYDFIMKLPHQFDTLVGERGAQLSGGQKQRIAIARALVRNPKILLLD 551
Query: 239 DPLSAVD 245
+ SA+D
Sbjct: 552 EATSALD 558
Score = 79.0 bits (193), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 59/205 (28%), Positives = 97/205 (47%), Gaps = 23/205 (11%)
Query: 72 EHEPRKINSVHSNG------KGHVSLDNVTAQWSLQNADLTLNAVSITFKPKQLACIIGA 125
E P +I+S + G +G+V V + + + L +S+ K Q ++G+
Sbjct: 1009 EKTP-EIDSYSTQGLKPNMLEGNVQFSGVVFNYPTRPSIPVLQGLSLEVKKGQTLALVGS 1067
Query: 126 IGAGKTSLLHIILNELRISSGKVSLGGT-------------VSYASQEPWIFAATIRQNI 172
G GK++++ ++ +G V L G + SQEP +F +I +NI
Sbjct: 1068 SGCGKSTVVQLLERFYDPMAGSVFLDGKEIKQLNVQWLRAQLGIVSQEPILFDCSIAENI 1127
Query: 173 LFGLPYLRRRYADVIRVCA---LQDDFDSLPNGDFTVVGERGASLSGGQKARINLARAVY 229
+G Y +++R + DSLP+ T VG++G LSGGQK RI +ARA+
Sbjct: 1128 AYGDNSRVVSYEEIVRAAKEANIHQFIDSLPDKYNTRVGDKGTQLSGGQKQRIAIARALV 1187
Query: 230 KNADIYLLDDPLSAVDMHVGKHLFE 254
+ I LLD+ SA+D K + E
Sbjct: 1188 RQPHILLLDEATSALDTESEKVVQE 1212
>pdb|3G60|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G60|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G61|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G61|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
Length = 1284
Score = 80.1 bits (196), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 56/187 (29%), Positives = 88/187 (47%), Gaps = 21/187 (11%)
Query: 73 HEPRKINSVHSNGKGHVSLDNVTAQWSLQNADLTLNAVSITFKPKQLACIIGAIGAGKTS 132
H+P I +G++ N+ + + L +++ K Q ++G G GK++
Sbjct: 379 HKPDNI-------QGNLEFKNIHFSYPSRKEVQILKGLNLKVKSGQTVALVGNSGCGKST 431
Query: 133 LLHIILNELRISSGKVSLGGT-------------VSYASQEPWIFAATIRQNILFGLPYL 179
+ ++ G VS+ G + SQEP +FA TI +NI +G +
Sbjct: 432 TVQLMQRLYDPLDGMVSIDGQDIRTINVRYLREIIGVVSQEPVLFATTIAENIRYGREDV 491
Query: 180 RR-RYADVIRVCALQDDFDSLPNGDFTVVGERGASLSGGQKARINLARAVYKNADIYLLD 238
++ D LP+ T+VGERGA LSGGQK RI +ARA+ +N I LLD
Sbjct: 492 TMDEIEKAVKEANAYDFIMKLPHQFDTLVGERGAQLSGGQKQRIAIARALVRNPKILLLD 551
Query: 239 DPLSAVD 245
+ SA+D
Sbjct: 552 EATSALD 558
Score = 79.0 bits (193), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 59/205 (28%), Positives = 97/205 (47%), Gaps = 23/205 (11%)
Query: 72 EHEPRKINSVHSNG------KGHVSLDNVTAQWSLQNADLTLNAVSITFKPKQLACIIGA 125
E P +I+S + G +G+V V + + + L +S+ K Q ++G+
Sbjct: 1009 EKTP-EIDSYSTQGLKPNMLEGNVQFSGVVFNYPTRPSIPVLQGLSLEVKKGQTLALVGS 1067
Query: 126 IGAGKTSLLHIILNELRISSGKVSLGGT-------------VSYASQEPWIFAATIRQNI 172
G GK++++ ++ +G V L G + SQEP +F +I +NI
Sbjct: 1068 SGCGKSTVVQLLERFYDPMAGSVFLDGKEIKQLNVQWLRAQLGIVSQEPILFDCSIAENI 1127
Query: 173 LFGLPYLRRRYADVIRVCA---LQDDFDSLPNGDFTVVGERGASLSGGQKARINLARAVY 229
+G Y +++R + DSLP+ T VG++G LSGGQK RI +ARA+
Sbjct: 1128 AYGDNSRVVSYEEIVRAAKEANIHQFIDSLPDKYNTRVGDKGTQLSGGQKQRIAIARALV 1187
Query: 230 KNADIYLLDDPLSAVDMHVGKHLFE 254
+ I LLD+ SA+D K + E
Sbjct: 1188 RQPHILLLDEATSALDTESEKVVQE 1212
>pdb|2IXE|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(d645n Mutant)
pdb|2IXE|D Chain D, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(d645n Mutant)
Length = 271
Score = 78.6 bits (192), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 58/193 (30%), Positives = 94/193 (48%), Gaps = 23/193 (11%)
Query: 84 NGKGHVSLDNVTAQWSLQNADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRI 143
N KG V +V+ + L ++ T P ++ ++G G+GK+++ ++ N +
Sbjct: 12 NMKGLVKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQP 71
Query: 144 SSGKVSLGG-------------TVSYASQEPWIFAATIRQNILFGLPYLRRRYADVIRVC 190
+ GKV L G V+ QEP +F + R+NI +GL R + I
Sbjct: 72 TGGKVLLDGEPLVQYDHHYLHTQVAAVGQEPLLFGRSFRENIAYGL--TRTPTMEEITAV 129
Query: 191 ALQD---DFDS-LPNGDFTVVGERGASLSGGQKARINLARAVYKNADIYLLDDPLSAVD- 245
A++ DF S P G T VGE G LSGGQ+ + LARA+ + + +LD+ SA+D
Sbjct: 130 AMESGAHDFISGFPQGYDTEVGETGNQLSGGQRQAVALARALIRKPRLLILDNATSALDA 189
Query: 246 ---MHVGKHLFED 255
+ V + L+E
Sbjct: 190 GNQLRVQRLLYES 202
>pdb|2IXF|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|B Chain B, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|C Chain C, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|D Chain D, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
Length = 271
Score = 78.2 bits (191), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 55/179 (30%), Positives = 87/179 (48%), Gaps = 19/179 (10%)
Query: 84 NGKGHVSLDNVTAQWSLQNADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRI 143
N KG V +V+ + L ++ T P ++ ++G G+GK+++ ++ N +
Sbjct: 12 NMKGLVKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQP 71
Query: 144 SSGKVSLGG-------------TVSYASQEPWIFAATIRQNILFGLPYLRRRYADVIRVC 190
+ GKV L G V+ QEP +F + R+NI +GL R + I
Sbjct: 72 TGGKVLLDGEPLVQYDHHYLHTQVAAVGQEPLLFGRSFRENIAYGL--TRTPTMEEITAV 129
Query: 191 ALQD---DFDS-LPNGDFTVVGERGASLSGGQKARINLARAVYKNADIYLLDDPLSAVD 245
A++ DF S P G T VGE G LSGGQ+ + LARA+ + + +LD SA+D
Sbjct: 130 AMESGAHDFISGFPQGYDTEVGETGNQLSGGQRQAVALARALIRKPRLLILDQATSALD 188
>pdb|1JJ7|A Chain A, Crystal Structure Of The C-Terminal Atpase Domain Of Human
Tap1
Length = 260
Score = 76.3 bits (186), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 52/189 (27%), Positives = 95/189 (50%), Gaps = 21/189 (11%)
Query: 86 KGHVSLDNVTAQWSLQNADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISS 145
+G V +V+ + + L L ++ T +P ++ ++G G+GK+++ ++ N + +
Sbjct: 12 EGLVQFQDVSFAYPNRPDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQPTG 71
Query: 146 GKVSLGG-------------TVSYASQEPWIFAATIRQNILFGL---PYLRRRYADVIRV 189
G++ L G V+ QEP +F ++++NI +GL P + A ++
Sbjct: 72 GQLLLDGKPLPQYEHRYLHRQVAAVGQEPQVFGRSLQENIAYGLTQKPTMEEITAAAVKS 131
Query: 190 CALQDDFDSLPNGDFTVVGERGASLSGGQKARINLARAVYKNADIYLLDDPLSAVD---- 245
A LP G T V E G+ LSGGQ+ + LARA+ + + +LDD SA+D
Sbjct: 132 GA-HSFISGLPQGYDTEVDEAGSQLSGGQRQAVALARALIRKPCVLILDDATSALDANSQ 190
Query: 246 MHVGKHLFE 254
+ V + L+E
Sbjct: 191 LQVEQLLYE 199
>pdb|3B5X|A Chain A, Crystal Structure Of Msba From Vibrio Cholerae
pdb|3B5X|B Chain B, Crystal Structure Of Msba From Vibrio Cholerae
Length = 582
Score = 74.7 bits (182), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 51/190 (26%), Positives = 91/190 (47%), Gaps = 23/190 (12%)
Query: 71 GEHEPRKINSVHSNGKGHVSLDNVTAQWSLQNADLTLNAVSITFKPKQLACIIGAIGAGK 130
G++E ++N G V + +VT + + L+ VS + + ++G G+GK
Sbjct: 331 GKYEAERVN-------GEVDVKDVTFTYQGKEKP-ALSHVSFSIPQGKTVALVGRSGSGK 382
Query: 131 TSLLHIILNELRISSGKVSLGGT-------------VSYASQEPWIFAATIRQNILFGLP 177
+++ ++ + SG + L G + SQ +F TI NI +
Sbjct: 383 STIANLFTRFYDVDSGSICLDGHDVRDYKLTNLRRHFALVSQNVHLFNDTIANNIAYAAE 442
Query: 178 --YLRRRYADVIRVCALQDDFDSLPNGDFTVVGERGASLSGGQKARINLARAVYKNADIY 235
Y R + R + +++P G TV+GE G SLSGGQ+ R+ +ARA+ ++A +
Sbjct: 443 GEYTREQIEQAARQAHAMEFIENMPQGLDTVIGENGTSLSGGQRQRVAIARALLRDAPVL 502
Query: 236 LLDDPLSAVD 245
+LD+ SA+D
Sbjct: 503 ILDEATSALD 512
>pdb|2IXG|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(S621a, G622v, D645n Mutant)
Length = 271
Score = 73.6 bits (179), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 56/193 (29%), Positives = 93/193 (48%), Gaps = 23/193 (11%)
Query: 84 NGKGHVSLDNVTAQWSLQNADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRI 143
N KG V +V+ + L ++ T P ++ ++G G+GK+++ ++ N +
Sbjct: 12 NMKGLVKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQP 71
Query: 144 SSGKVSLGG-------------TVSYASQEPWIFAATIRQNILFGLPYLRRRYADVIRVC 190
+ GKV L G V+ QEP +F + R+NI +GL R + I
Sbjct: 72 TGGKVLLDGEPLVQYDHHYLHTQVAAVGQEPLLFGRSFRENIAYGL--TRTPTMEEITAV 129
Query: 191 ALQD---DFDS-LPNGDFTVVGERGASLSGGQKARINLARAVYKNADIYLLDDPLSAVD- 245
A++ DF S P G T VGE G L+ GQ+ + LARA+ + + +LD+ SA+D
Sbjct: 130 AMESGAHDFISGFPQGYDTEVGETGNQLAVGQRQAVALARALIRKPRLLILDNATSALDA 189
Query: 246 ---MHVGKHLFED 255
+ V + L+E
Sbjct: 190 GNQLRVQRLLYES 202
>pdb|3B5W|A Chain A, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|B Chain B, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|C Chain C, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|D Chain D, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|E Chain E, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|F Chain F, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|G Chain G, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|H Chain H, Crystal Structure Of Eschericia Coli Msba
Length = 582
Score = 73.2 bits (178), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 59/227 (25%), Positives = 104/227 (45%), Gaps = 20/227 (8%)
Query: 38 LFTTRMALFCTLTSFIFFGGR----LSTDRVLNFLLLGEHEPRKINSVHSNGKGHVSLDN 93
+F++ +AL L S + ++ + L +L E E + V G V N
Sbjct: 287 VFSSMIALMRPLKSLTNVNAQFQRGMAACQTLFTILDSEQEKDEGKRVIERATGDVEFRN 346
Query: 94 VTAQWSLQNADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKV----- 148
VT + ++ L +++ + ++G G+GK+++ +I I G++
Sbjct: 347 VTFTYPGRDVP-ALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGEILMDGH 405
Query: 149 --------SLGGTVSYASQEPWIFAATIRQNILFGLP--YLRRRYADVIRVCALQDDFDS 198
SL V+ SQ +F T+ NI + Y R + + R+ D +
Sbjct: 406 DLREYTLASLRNQVALVSQNVHLFNDTVANNIAYARTEQYSREQIEEAARMAYAMDFINK 465
Query: 199 LPNGDFTVVGERGASLSGGQKARINLARAVYKNADIYLLDDPLSAVD 245
+ NG TV+GE G LSGGQ+ RI +ARA+ +++ I +LD+ SA+D
Sbjct: 466 MDNGLDTVIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALD 512
>pdb|1MV5|A Chain A, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|B Chain B, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|C Chain C, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|D Chain D, Crystal Structure Of Lmra Atp-Binding Domain
Length = 243
Score = 72.4 bits (176), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 41/163 (25%), Positives = 84/163 (51%), Gaps = 15/163 (9%)
Query: 98 WSLQNADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSLGGT---- 153
++ +++ L +S +P + G G GK+++ ++ + ++G++++ G
Sbjct: 9 FAYDDSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDN 68
Query: 154 ---------VSYASQEPWIFAATIRQNILFGLP--YLRRRYADVIRVCALQDDFDSLPNG 202
+ + SQ+ I A TIR+N+ +GL Y V+ + + +++P+
Sbjct: 69 ISLENWRSQIGFVSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFARSFVENMPDQ 128
Query: 203 DFTVVGERGASLSGGQKARINLARAVYKNADIYLLDDPLSAVD 245
T VGERG +SGGQ+ R+ +ARA +N I +LD+ +++D
Sbjct: 129 LNTEVGERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLD 171
>pdb|3B5Y|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Z|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B60|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
Length = 582
Score = 70.1 bits (170), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 49/191 (25%), Positives = 86/191 (45%), Gaps = 23/191 (12%)
Query: 78 INSVHSNGKGHVSLDNVTAQWSLQNADLT--------LNAVSITFKPKQLACIIGAIGAG 129
++S +G +D T +N T L +++ + ++G G+G
Sbjct: 322 LDSEQEKDEGKRVIDRATGDLEFRNVTFTYPGREVPALRNINLKIPAGKTVALVGRSGSG 381
Query: 130 KTSLLHIILNELRISSGKV-------------SLGGTVSYASQEPWIFAATIRQNILFGL 176
K+++ +I I G + SL V+ SQ +F T+ NI +
Sbjct: 382 KSTIASLITRFYDIDEGHILMDGHDLREYTLASLRNQVALVSQNVHLFNDTVANNIAYAR 441
Query: 177 --PYLRRRYADVIRVCALQDDFDSLPNGDFTVVGERGASLSGGQKARINLARAVYKNADI 234
Y R + + R+ D + + NG T++GE G LSGGQ+ RI +ARA+ +++ I
Sbjct: 442 TEEYSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARALLRDSPI 501
Query: 235 YLLDDPLSAVD 245
+LD+ SA+D
Sbjct: 502 LILDEATSALD 512
>pdb|2GHI|A Chain A, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
pdb|2GHI|B Chain B, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
pdb|2GHI|C Chain C, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
pdb|2GHI|D Chain D, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
Length = 260
Score = 65.9 bits (159), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 47/186 (25%), Positives = 87/186 (46%), Gaps = 18/186 (9%)
Query: 88 HVSLDNVTAQWSLQNADLTLNAVSITFKPKQLAC-IIGAIGAGKTSLLHIILNELRISSG 146
++ +V + Q TL +++ F P C ++G G+GK+++ + L + G
Sbjct: 17 NIEFSDVNFSYPKQTNHRTLKSINF-FIPSGTTCALVGHTGSGKSTIAKL-LYRFYDAEG 74
Query: 147 KVSLGGT-------------VSYASQEPWIFAATIRQNILFG-LPYLRRRYADVIRVCAL 192
+ +GG + Q+ +F TI+ NIL+G L + L
Sbjct: 75 DIKIGGKNVNKYNRNSIRSIIGIVPQDTILFNETIKYNILYGKLDATDEEVIKATKSAQL 134
Query: 193 QDDFDSLPNGDFTVVGERGASLSGGQKARINLARAVYKNADIYLLDDPLSAVDMHVGKHL 252
D ++LP T+VG +G LSGG++ RI +AR + K+ I + D+ S++D ++L
Sbjct: 135 YDFIEALPKKWDTIVGNKGMKLSGGERQRIAIARCLLKDPKIVIFDEATSSLDSKT-EYL 193
Query: 253 FEDCIS 258
F+ +
Sbjct: 194 FQKAVE 199
>pdb|3QF4|B Chain B, Crystal Structure Of A Heterodimeric Abc Transporter In
Its Inward- Facing Conformation
Length = 598
Score = 65.5 bits (158), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 49/207 (23%), Positives = 88/207 (42%), Gaps = 16/207 (7%)
Query: 60 STDRVLNFLLLGEHEPRKINSVHSNGKGHVSLDNVTAQWSLQNADLTLNAVSITFKPKQL 119
S +R+ L L E + +G + NV +S L ++ KP Q
Sbjct: 326 SAERIFEILDLEEEKDDPDAVELREVRGEIEFKNV--WFSYDKKKPVLKDITFHIKPGQK 383
Query: 120 ACIIGAIGAGKTSLLHIILNELRISSGKV-------------SLGGTVSYASQEPWIFAA 166
++G G+GKT+++++++ + G++ SL ++ Q+ +F+
Sbjct: 384 VALVGPTGSGKTTIVNLLMRFYDVDRGQILVDGIDIRKIKRSSLRSSIGIVLQDTILFST 443
Query: 167 TIRQNILFGLPYLRRRYADVIRVCALQDDF-DSLPNGDFTVVGERGASLSGGQKARINLA 225
T+++N+ +G P D F LP G TV+ + G LS GQ+ + +
Sbjct: 444 TVKENLKYGNPGATDEEIKEAAKLTHSDHFIKHLPEGYETVLTDNGEDLSQGQRQLLAIT 503
Query: 226 RAVYKNADIYLLDDPLSAVDMHVGKHL 252
RA N I +LD+ S VD K +
Sbjct: 504 RAFLANPKILILDEATSNVDTKTEKSI 530
>pdb|3B5J|A Chain A, Crystal Structures Of The S504a Mutant Of An Isolated
Abc-atpase In Complex With Tnp-adp
Length = 243
Score = 59.7 bits (143), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 43/160 (26%), Positives = 78/160 (48%), Gaps = 18/160 (11%)
Query: 102 NADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSLGGTVSYASQEP 161
++ + L+ ++++ K ++ I+G G+GK++L +I +G+V + G +
Sbjct: 16 DSPVILDNINLSIKQGEVIGIVGRAGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPN 75
Query: 162 WI---FAATIRQNILF-------------GLPYLRRRYADVIRVCALQDDFDSLPNGDFT 205
W+ ++ N+L G+ + YA ++ D L G T
Sbjct: 76 WLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYA--AKLAGAHDFISELREGYNT 133
Query: 206 VVGERGASLSGGQKARINLARAVYKNADIYLLDDPLSAVD 245
+VGE+GA LSGGQ+ RI +ARA+ N I + D+ SA+D
Sbjct: 134 IVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALD 173
>pdb|3D31|A Chain A, Modbc From Methanosarcina Acetivorans
pdb|3D31|B Chain B, Modbc From Methanosarcina Acetivorans
Length = 348
Score = 59.7 bits (143), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 45/173 (26%), Positives = 83/173 (47%), Gaps = 31/173 (17%)
Query: 89 VSLDNVTAQWSLQNADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKV 148
+ +++++ +W + +L+ +S+ + + I+G GAGKT L +I SG++
Sbjct: 2 IEIESLSRKWK----NFSLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRI 57
Query: 149 SLGGT-----------VSYASQEPWIFA-ATIRQNILFGLPYLR----RRYADVIRVCAL 192
L G +++ Q +F +++N+ FG+ + +R D R +
Sbjct: 58 LLDGKDVTDLSPEKHDIAFVYQNYSLFPHMNVKKNLEFGMRMKKIKDPKRVLDTARDLKI 117
Query: 193 QDDFDSLPNGDFTVVGERGASLSGGQKARINLARAVYKNADIYLLDDPLSAVD 245
+ D P +LSGG++ R+ LARA+ N I LLD+PLSA+D
Sbjct: 118 EHLLDRNP-----------LTLSGGEQQRVALARALVTNPKILLLDEPLSALD 159
>pdb|2PMK|A Chain A, Crystal Structures Of An Isolated Abc-Atpase In Complex
With Tnp-Adp
Length = 243
Score = 59.3 bits (142), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 43/160 (26%), Positives = 78/160 (48%), Gaps = 18/160 (11%)
Query: 102 NADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSLGGTVSYASQEP 161
++ + L+ ++++ K ++ I+G G+GK++L +I +G+V + G +
Sbjct: 16 DSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPN 75
Query: 162 WI---FAATIRQNILF-------------GLPYLRRRYADVIRVCALQDDFDSLPNGDFT 205
W+ ++ N+L G+ + YA ++ D L G T
Sbjct: 76 WLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYA--AKLAGAHDFISELREGYNT 133
Query: 206 VVGERGASLSGGQKARINLARAVYKNADIYLLDDPLSAVD 245
+VGE+GA LSGGQ+ RI +ARA+ N I + D+ SA+D
Sbjct: 134 IVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALD 173
>pdb|1MT0|A Chain A, Atp-Binding Domain Of Haemolysin B From Escherichia Coli
Length = 241
Score = 59.3 bits (142), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 43/160 (26%), Positives = 78/160 (48%), Gaps = 18/160 (11%)
Query: 102 NADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSLGGTVSYASQEP 161
++ + L+ ++++ K ++ I+G G+GK++L +I +G+V + G +
Sbjct: 14 DSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPN 73
Query: 162 WI---FAATIRQNILF-------------GLPYLRRRYADVIRVCALQDDFDSLPNGDFT 205
W+ ++ N+L G+ + YA ++ D L G T
Sbjct: 74 WLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYA--AKLAGAHDFISELREGYNT 131
Query: 206 VVGERGASLSGGQKARINLARAVYKNADIYLLDDPLSAVD 245
+VGE+GA LSGGQ+ RI +ARA+ N I + D+ SA+D
Sbjct: 132 IVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALD 171
>pdb|2FF7|A Chain A, The Abc-Atpase Of The Abc-Transporter Hlyb In The Adp
Bound State
Length = 247
Score = 59.3 bits (142), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 43/160 (26%), Positives = 78/160 (48%), Gaps = 18/160 (11%)
Query: 102 NADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSLGGTVSYASQEP 161
++ + L+ ++++ K ++ I+G G+GK++L +I +G+V + G +
Sbjct: 20 DSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPN 79
Query: 162 WI---FAATIRQNILF-------------GLPYLRRRYADVIRVCALQDDFDSLPNGDFT 205
W+ ++ N+L G+ + YA ++ D L G T
Sbjct: 80 WLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYA--AKLAGAHDFISELREGYNT 137
Query: 206 VVGERGASLSGGQKARINLARAVYKNADIYLLDDPLSAVD 245
+VGE+GA LSGGQ+ RI +ARA+ N I + D+ SA+D
Sbjct: 138 IVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALD 177
>pdb|1XEF|A Chain A, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|B Chain B, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|C Chain C, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|D Chain D, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
Length = 241
Score = 58.9 bits (141), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 43/160 (26%), Positives = 78/160 (48%), Gaps = 18/160 (11%)
Query: 102 NADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSLGGTVSYASQEP 161
++ + L+ ++++ K ++ I+G G+GK++L +I +G+V + G +
Sbjct: 14 DSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPN 73
Query: 162 WI---FAATIRQNILF-------------GLPYLRRRYADVIRVCALQDDFDSLPNGDFT 205
W+ ++ N+L G+ + YA ++ D L G T
Sbjct: 74 WLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYA--AKLAGAHDFISELREGYNT 131
Query: 206 VVGERGASLSGGQKARINLARAVYKNADIYLLDDPLSAVD 245
+VGE+GA LSGGQ+ RI +ARA+ N I + D+ SA+D
Sbjct: 132 IVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALD 171
>pdb|2FFA|A Chain A, Crystal Structure Of Abc-Atpase H662a Of The
Abc-Transporter Hlyb In Complex With Adp
pdb|2FGJ|A Chain A, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|B Chain B, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|C Chain C, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|D Chain D, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
Length = 247
Score = 58.9 bits (141), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 43/160 (26%), Positives = 78/160 (48%), Gaps = 18/160 (11%)
Query: 102 NADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSLGGTVSYASQEP 161
++ + L+ ++++ K ++ I+G G+GK++L +I +G+V + G +
Sbjct: 20 DSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPN 79
Query: 162 WI---FAATIRQNILF-------------GLPYLRRRYADVIRVCALQDDFDSLPNGDFT 205
W+ ++ N+L G+ + YA ++ D L G T
Sbjct: 80 WLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYA--AKLAGAHDFISELREGYNT 137
Query: 206 VVGERGASLSGGQKARINLARAVYKNADIYLLDDPLSAVD 245
+VGE+GA LSGGQ+ RI +ARA+ N I + D+ SA+D
Sbjct: 138 IVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALD 177
>pdb|3FVQ|A Chain A, Crystal Structure Of The Nucleotide Binding Domain Fbpc
Complexed With Atp
pdb|3FVQ|B Chain B, Crystal Structure Of The Nucleotide Binding Domain Fbpc
Complexed With Atp
Length = 359
Score = 58.9 bits (141), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 58/183 (31%), Positives = 92/183 (50%), Gaps = 23/183 (12%)
Query: 99 SLQNADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSLGGT----- 153
S QN + LN +S++ P ++ IIGA G GKT+LL + + SG++SL G
Sbjct: 13 SFQNTPV-LNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEISLSGKTIFSK 71
Query: 154 ----------VSYASQEPWIFAA-TIRQNILFGLPYLRRRYA-DVIRVCALQDDFDSLPN 201
+ Y QE +F T+ +NI +GL + R A + R+ A+ +
Sbjct: 72 NTNLPVRERRLGYLVQEGVLFPHLTVYRNIAYGLGNGKGRTAQERQRIEAMLEL-----T 126
Query: 202 GDFTVVGERGASLSGGQKARINLARAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGCL 261
G + G LSGGQ+ R LARA+ + ++ LLD+P SA+D + + + ED I+
Sbjct: 127 GISELAGRYPHELSGGQQQRAALARALAPDPELILLDEPFSALDEQLRRQIREDMIAALR 186
Query: 262 TSG 264
+G
Sbjct: 187 ANG 189
>pdb|2FFB|A Chain A, The Crystal Structure Of The Hlyb-Nbd E631q Mutant In
Complex With Adp
pdb|2FGK|A Chain A, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|B Chain B, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|C Chain C, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|D Chain D, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
Length = 247
Score = 58.5 bits (140), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 43/160 (26%), Positives = 77/160 (48%), Gaps = 18/160 (11%)
Query: 102 NADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSLGGTVSYASQEP 161
++ + L+ ++++ K ++ I+G G+GK++L +I +G+V + G +
Sbjct: 20 DSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPN 79
Query: 162 WI---FAATIRQNILF-------------GLPYLRRRYADVIRVCALQDDFDSLPNGDFT 205
W+ ++ N+L G+ + YA ++ D L G T
Sbjct: 80 WLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYA--AKLAGAHDFISELREGYNT 137
Query: 206 VVGERGASLSGGQKARINLARAVYKNADIYLLDDPLSAVD 245
+VGE+GA LSGGQ+ RI +ARA+ N I + D SA+D
Sbjct: 138 IVGEQGAGLSGGQRQRIAIARALVNNPKILIFDQATSALD 177
>pdb|1Z47|A Chain A, Structure Of The Atpase Subunit Cysa Of The Putative
Sulfate Atp-Binding Cassette (Abc) Transporter From
Alicyclobacillus Acidocaldarius
pdb|1Z47|B Chain B, Structure Of The Atpase Subunit Cysa Of The Putative
Sulfate Atp-Binding Cassette (Abc) Transporter From
Alicyclobacillus Acidocaldarius
Length = 355
Score = 57.8 bits (138), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 43/166 (25%), Positives = 74/166 (44%), Gaps = 30/166 (18%)
Query: 106 TLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSLGG-----------TV 154
++ VS + ++ ++G G+GKT++L +I R + G V +GG V
Sbjct: 30 SVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDVWIGGKRVTDLPPQKRNV 89
Query: 155 SYASQEPWIFA-ATIRQNILFGLPYLR-------RRYADVIRVCALQDDFDSLPNGDFTV 206
Q +F T+ N+ FGL R R +++R L+ + P+
Sbjct: 90 GLVFQNYALFQHMTVYDNVSFGLREKRVPKDEMDARVRELLRFMRLESYANRFPH----- 144
Query: 207 VGERGASLSGGQKARINLARAVYKNADIYLLDDPLSAVDMHVGKHL 252
LSGGQ+ R+ LARA+ + L D+P +A+D + + L
Sbjct: 145 ------ELSGGQQQRVALARALAPRPQVLLFDEPFAAIDTQIRREL 184
>pdb|4HLU|D Chain D, Structure Of The Ecfa-a' Heterodimer Bound To Adp
pdb|4HLU|C Chain C, Structure Of The Ecfa-a' Heterodimer Bound To Adp
Length = 268
Score = 57.8 bits (138), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 47/186 (25%), Positives = 88/186 (47%), Gaps = 34/186 (18%)
Query: 88 HVSLDNVTAQWSLQNADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGK 147
+ L++V+ ++ N D L V+ F+ ++ ++G G+GKT+LL I+ L ++G+
Sbjct: 11 RIELNSVSFRY---NGDYVLKDVNAEFETGKIYVVVGKNGSGKTTLLKILAG-LLAAAGE 66
Query: 148 VSLGGT----------VSYASQEP--WIFAATIRQNILFGLPYL-------RRRYADVIR 188
+ L G+ V Y Q P I AT+ +++ F L + R+R V+
Sbjct: 67 IFLDGSPADPFLLRKNVGYVFQNPSSQIIGATVEEDVAFSLEIMGLDESEMRKRIKKVLE 126
Query: 189 VCALQDDFDSLPNGDFTVVGERGASLSGGQKARINLARAVYKNADIYLLDDPLSAVDMHV 248
+ L + P +LSGGQK R+ +A + ++ LD+P+S +D
Sbjct: 127 LVGLSGLAAADP-----------LNLSGGQKQRLAIASMLARDTRFLALDEPVSMLDPPS 175
Query: 249 GKHLFE 254
+ +F+
Sbjct: 176 QREIFQ 181
>pdb|3GD7|A Chain A, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
pdb|3GD7|B Chain B, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
pdb|3GD7|C Chain C, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
pdb|3GD7|D Chain D, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
Length = 390
Score = 57.0 bits (136), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 52/192 (27%), Positives = 90/192 (46%), Gaps = 26/192 (13%)
Query: 87 GHVSLDNVTAQWSLQNADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSG 146
G +++ ++TA+++ + + L +S + P Q ++G G+GK++LL L L + G
Sbjct: 18 GQMTVKDLTAKYT-EGGNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEG 75
Query: 147 KVSLGGTVSYAS--------------QEPWIFAATIRQNILFGLPYLRRRYADVIRVCAL 192
++ + G VS+ S Q+ +IF+ T R+N+ + + V L
Sbjct: 76 EIQIDG-VSWDSITLEQWRKAFGVIPQKVFIFSGTFRKNLDPNAAHSDQEIWKVADEVGL 134
Query: 193 QDDFDSLPNG-DFTVVGERGASLSGGQKARINLARAVYKNADIYLLDDPLSAVD------ 245
+ + P DF +V + G LS G K + LAR+V A I LLD+P + +D
Sbjct: 135 RSVIEQFPGKLDFVLV-DGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPVTYQI 193
Query: 246 -MHVGKHLFEDC 256
K F DC
Sbjct: 194 IRRTLKQAFADC 205
>pdb|3DHW|C Chain C, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|D Chain D, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|G Chain G, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|H Chain H, Crystal Structure Of Methionine Importer Metni
Length = 343
Score = 55.5 bits (132), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 46/172 (26%), Positives = 75/172 (43%), Gaps = 35/172 (20%)
Query: 107 LNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSLGGTVSYASQEPWIFAA 166
LN VS+ Q+ +IGA GAGK++L+ + R + G V + G E + A
Sbjct: 21 LNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKA 80
Query: 167 TIRQNILF---------------GLPY---------LRRRYADVIRVCALQDDFDSLPNG 202
+ ++F LP ++RR +++ + L D DS P
Sbjct: 81 RRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKHDSYP-- 138
Query: 203 DFTVVGERGASLSGGQKARINLARAVYKNADIYLLDDPLSAVDMHVGKHLFE 254
++LSGGQK R+ +ARA+ N + L D+ SA+D + + E
Sbjct: 139 ---------SNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILE 181
>pdb|3TUI|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|G Chain G, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|H Chain H, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUZ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|G Chain G, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|H Chain H, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
Length = 366
Score = 54.7 bits (130), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 50/199 (25%), Positives = 84/199 (42%), Gaps = 36/199 (18%)
Query: 81 VHSNGKGHVSLDNVTAQWSLQNADL-TLNAVSITFKPKQLACIIGAIGAGKTSLLHIILN 139
+ + K + L N+T + + LN VS+ Q+ +IGA GAGK++L+ +
Sbjct: 17 IDDDDKHMIKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNL 76
Query: 140 ELRISSGKVSLGGTVSYASQEPWIFAATIRQNILF---------------GLPY------ 178
R + G V + G E + A + ++F LP
Sbjct: 77 LERPTEGSVLVDGQELTTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTP 136
Query: 179 ---LRRRYADVIRVCALQDDFDSLPNGDFTVVGERGASLSGGQKARINLARAVYKNADIY 235
++RR +++ + L D DS P ++LSGGQK R+ +ARA+ N +
Sbjct: 137 KDEVKRRVTELLSLVGLGDKHDSYP-----------SNLSGGQKQRVAIARALASNPKVL 185
Query: 236 LLDDPLSAVDMHVGKHLFE 254
L D SA+D + + E
Sbjct: 186 LCDQATSALDPATTRSILE 204
>pdb|3TUJ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Dm Crystal Form
pdb|3TUJ|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Dm Crystal Form
Length = 366
Score = 53.5 bits (127), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 50/199 (25%), Positives = 83/199 (41%), Gaps = 36/199 (18%)
Query: 81 VHSNGKGHVSLDNVTAQWSLQNADL-TLNAVSITFKPKQLACIIGAIGAGKTSLLHIILN 139
+ + K + L N+T + + LN VS+ Q+ +IGA GAGK++L+ +
Sbjct: 17 IDDDDKHXIKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNL 76
Query: 140 ELRISSGKVSLGGTVSYASQEPWIFAATIRQNILF---------------GLPY------ 178
R + G V + G E + A + +F LP
Sbjct: 77 LERPTEGSVLVDGQELTTLSESELTKARRQIGXIFQHFNLLSSRTVFGNVALPLELDNTP 136
Query: 179 ---LRRRYADVIRVCALQDDFDSLPNGDFTVVGERGASLSGGQKARINLARAVYKNADIY 235
++RR +++ + L D DS P ++LSGGQK R+ +ARA+ N +
Sbjct: 137 KDEVKRRVTELLSLVGLGDKHDSYP-----------SNLSGGQKQRVAIARALASNPKVL 185
Query: 236 LLDDPLSAVDMHVGKHLFE 254
L D SA+D + + E
Sbjct: 186 LCDQATSALDPATTRSILE 204
>pdb|2IT1|A Chain A, Structure Of Ph0203 Protein From Pyrococcus Horikoshii
pdb|2IT1|B Chain B, Structure Of Ph0203 Protein From Pyrococcus Horikoshii
Length = 362
Score = 52.8 bits (125), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 45/173 (26%), Positives = 79/173 (45%), Gaps = 25/173 (14%)
Query: 88 HVSLDNVTAQWSLQNADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGK 147
+ L+N+ ++ A LN +++ K + ++G G+GK++LL+ I + +SGK
Sbjct: 3 EIKLENIVKKFGNFTA---LNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGK 59
Query: 148 VSLGG-----------TVSYASQEPWIFA-ATIRQNILFGLPYLRRRYADV---IRVCAL 192
+ V Q ++ T+ +NI F L + ++ +R A
Sbjct: 60 IYFDEKDVTELPPKDRNVGLVFQNWALYPHMTVYKNIAFPLELRKAPREEIDKKVREVAK 119
Query: 193 QDDFDSLPNGDFTVVGERGASLSGGQKARINLARAVYKNADIYLLDDPLSAVD 245
D L N LSGGQ+ R+ +ARA+ K ++ LLD+PLS +D
Sbjct: 120 MLHIDKLLN-------RYPWQLSGGQQQRVAIARALVKEPEVLLLDEPLSNLD 165
>pdb|1VCI|A Chain A, Crystal Structure Of The Atp-binding Cassette Of
Multisugar Transporter From Pyrococcus Horikoshii Ot3
Complexed With Atp
Length = 373
Score = 52.4 bits (124), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 46/173 (26%), Positives = 80/173 (46%), Gaps = 25/173 (14%)
Query: 88 HVSLDNVTAQWSLQNADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGK 147
V L+N+T ++ A +N +++T K + ++G G GKT+ L +I + G+
Sbjct: 12 EVKLENLTKRFGNFTA---VNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGR 68
Query: 148 VSLGG-TVSYASQE----PWIFAA-------TIRQNILFGLP---YLRRRYADVIRVCAL 192
+ G V+Y + +F + T+ +NI F L + + +R A
Sbjct: 69 IYFGDRDVTYLPPKDRNISMVFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAE 128
Query: 193 QDDFDSLPNGDFTVVGERGASLSGGQKARINLARAVYKNADIYLLDDPLSAVD 245
+ L N A LSGGQ+ R+ +ARA+ D+ L+D+PLS +D
Sbjct: 129 LLQIEELLN-------RYPAQLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLD 174
>pdb|1V43|A Chain A, Crystal Structure Of Atpase Subunit Of Abc Sugar
Transporter
Length = 372
Score = 52.4 bits (124), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 46/173 (26%), Positives = 80/173 (46%), Gaps = 25/173 (14%)
Query: 88 HVSLDNVTAQWSLQNADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGK 147
V L+N+T ++ A +N +++T K + ++G G GKT+ L +I + G+
Sbjct: 11 EVKLENLTKRFGNFTA---VNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGR 67
Query: 148 VSLGG-TVSYASQE----PWIFAA-------TIRQNILFGLP---YLRRRYADVIRVCAL 192
+ G V+Y + +F + T+ +NI F L + + +R A
Sbjct: 68 IYFGDRDVTYLPPKDRNISMVFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAE 127
Query: 193 QDDFDSLPNGDFTVVGERGASLSGGQKARINLARAVYKNADIYLLDDPLSAVD 245
+ L N A LSGGQ+ R+ +ARA+ D+ L+D+PLS +D
Sbjct: 128 LLQIEELLN-------RYPAQLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLD 173
>pdb|2ONK|A Chain A, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|B Chain B, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|F Chain F, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|G Chain G, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
Length = 240
Score = 50.8 bits (120), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 43/147 (29%), Positives = 73/147 (49%), Gaps = 18/147 (12%)
Query: 121 CIIGAIGAGKTSLLHIILNELRISSGKVSLGGT-----------VSYASQEPWIFA-ATI 168
++G GAGK+ L +I ++ G+V L G + + Q+ +F ++
Sbjct: 28 VLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPERRGIGFVPQDYALFPHLSV 87
Query: 169 RQNILFGLPYLRRRYADVIRVCALQDDFDSLPNGDFTVVGERGASLSGGQKARINLARAV 228
+NI +GL R V R +++ + L G ++ + A LSGG++ R+ LARA+
Sbjct: 88 YRNIAYGL----RNVERVERDRRVREMAEKL--GIAHLLDRKPARLSGGERQRVALARAL 141
Query: 229 YKNADIYLLDDPLSAVDMHVGKHLFED 255
+ LLD+PLSAVD+ L E+
Sbjct: 142 VIQPRLLLLDEPLSAVDLKTKGVLMEE 168
>pdb|1G29|1 Chain 1, Malk
pdb|1G29|2 Chain 2, Malk
Length = 372
Score = 50.1 bits (118), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 41/174 (23%), Positives = 70/174 (40%), Gaps = 38/174 (21%)
Query: 98 WSLQNADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSLGGTVSYA 157
W + + +S+ K + ++G G GKT+ L +I S G++ +G + A
Sbjct: 10 WKVFGEVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKL-VA 68
Query: 158 SQEPWIFAA-------------------TIRQNILFGLPYLR-------RRYADVIRVCA 191
E IF T+ NI F L + +R +V +
Sbjct: 69 DPEKGIFVPPKDRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLG 128
Query: 192 LQDDFDSLPNGDFTVVGERGASLSGGQKARINLARAVYKNADIYLLDDPLSAVD 245
L + + P LSGGQ+ R+ L RA+ + ++L+D+PLS +D
Sbjct: 129 LTELLNRKPR-----------ELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLD 171
>pdb|1Q1B|A Chain A, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|B Chain B, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|C Chain C, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|D Chain D, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
Length = 381
Score = 47.8 bits (112), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 45/178 (25%), Positives = 74/178 (41%), Gaps = 37/178 (20%)
Query: 89 VSLDNVTAQWS--LQNADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSG 146
V L NVT W + + D+ L+ + +G G GK++LL +I I+SG
Sbjct: 4 VQLQNVTKAWGEVVVSKDINLD-----IHEGEFVVFVGPSGCGKSTLLRMIAGLETITSG 58
Query: 147 KVSLGGT-----------VSYASQEPWIFAA-TIRQNILFGL-------PYLRRRYADVI 187
+ +G V Q ++ ++ +N+ FGL + +R V
Sbjct: 59 DLFIGEKRMNDTPPAERGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVA 118
Query: 188 RVCALQDDFDSLPNGDFTVVGERGASLSGGQKARINLARAVYKNADIYLLDDPLSAVD 245
V L D P +LSGGQ+ R+ + R + ++LLD+PLS +D
Sbjct: 119 EVLQLAHLLDRKPK-----------ALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLD 165
>pdb|1Q12|A Chain A, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|B Chain B, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|C Chain C, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|D Chain D, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q1E|A Chain A, The Atpase Component Of E. Coli Maltose Transporter (Malk)
In The Nucleotide-Free Form
pdb|1Q1E|B Chain B, The Atpase Component Of E. Coli Maltose Transporter (Malk)
In The Nucleotide-Free Form
pdb|2AWN|A Chain A, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|B Chain B, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|C Chain C, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|D Chain D, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWO|A Chain A, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|B Chain B, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|C Chain C, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|D Chain D, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|3FH6|A Chain A, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|B Chain B, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|C Chain C, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|D Chain D, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3PUY|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Amp-Pnp After Crystal
Soaking Of The Pretranslocation State
pdb|3PUY|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Amp-Pnp After Crystal
Soaking Of The Pretranslocation State
pdb|3PUZ|A Chain A, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Bound To Amp-Pnp
pdb|3PUZ|B Chain B, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Bound To Amp-Pnp
pdb|3PV0|A Chain A, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Without Nucleotide
pdb|3PV0|B Chain B, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Without Nucleotide
pdb|3PUV|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Vo4
pdb|3PUV|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Vo4
pdb|3PUW|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Alf4
pdb|3PUW|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Alf4
pdb|3PUX|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Bef3
pdb|3PUX|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Bef3
pdb|3RLF|A Chain A, Crystal Structure Of The Maltose-Binding ProteinMALTOSE
TRANSPORTER Complex In An Outward-Facing Conformation
Bound To Mgamppnp
pdb|3RLF|B Chain B, Crystal Structure Of The Maltose-Binding ProteinMALTOSE
TRANSPORTER Complex In An Outward-Facing Conformation
Bound To Mgamppnp
Length = 381
Score = 47.8 bits (112), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 45/178 (25%), Positives = 74/178 (41%), Gaps = 37/178 (20%)
Query: 89 VSLDNVTAQWS--LQNADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSG 146
V L NVT W + + D+ L+ + +G G GK++LL +I I+SG
Sbjct: 4 VQLQNVTKAWGEVVVSKDINLD-----IHEGEFVVFVGPSGCGKSTLLRMIAGLETITSG 58
Query: 147 KVSLGGT-----------VSYASQEPWIFAA-TIRQNILFGL-------PYLRRRYADVI 187
+ +G V Q ++ ++ +N+ FGL + +R V
Sbjct: 59 DLFIGEKRMNDTPPAERGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVA 118
Query: 188 RVCALQDDFDSLPNGDFTVVGERGASLSGGQKARINLARAVYKNADIYLLDDPLSAVD 245
V L D P +LSGGQ+ R+ + R + ++LLD+PLS +D
Sbjct: 119 EVLQLAHLLDRKPK-----------ALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLD 165
>pdb|1L2T|A Chain A, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter
Cassette
pdb|1L2T|B Chain B, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter
Cassette
Length = 235
Score = 47.4 bits (111), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 45/196 (22%), Positives = 84/196 (42%), Gaps = 41/196 (20%)
Query: 89 VSLDNVTAQWSL-QNADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGK 147
+ L NVT + + + L V++ K + I+G G+GK+++L+II + + G+
Sbjct: 2 IKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGE 61
Query: 148 VSLGG-----------------TVSYASQE-PWIFAATIRQNILFGLPY----------L 179
V + + + Q+ I T +N+ L +
Sbjct: 62 VYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEER 121
Query: 180 RRRYADVIRVCALQDDF-DSLPNGDFTVVGERGASLSGGQKARINLARAVYKNADIYLLD 238
R+R + +++ L++ F + PN LSGGQ+ R+ +ARA+ N I L D
Sbjct: 122 RKRALECLKMAELEERFANHKPN-----------QLSGGQQQRVAIARALANNPPIILAD 170
Query: 239 DPLSAVDMHVGKHLFE 254
P A+D G+ + +
Sbjct: 171 QPTGALDSKTGEKIMQ 186
>pdb|4G1U|C Chain C, X-Ray Structure Of The Bacterial Heme Transporter Hmuuv
From Yersinia Pestis
pdb|4G1U|D Chain D, X-Ray Structure Of The Bacterial Heme Transporter Hmuuv
From Yersinia Pestis
Length = 266
Score = 47.4 bits (111), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 46/167 (27%), Positives = 73/167 (43%), Gaps = 30/167 (17%)
Query: 107 LNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSLGGTVSYASQEPWIFA- 165
+N VS+ ++ IIG GAGK++LL ++ L S G+ L G + S +P A
Sbjct: 27 INDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSPSHGECHLLGQ-NLNSWQPKALAR 85
Query: 166 --ATIRQNILFGLPYL--------RRRYA-----DVIRVCALQDDFDSLPNGDFTVVGER 210
A +RQ P+ R Y ++ Q D +L D+ V
Sbjct: 86 TRAVMRQYSELAFPFSVSEVIQMGRAPYGGSQDRQALQQVMAQTDCLALAQRDYRV---- 141
Query: 211 GASLSGGQKARINLARAVYK------NADIYLLDDPLSAVDMHVGKH 251
LSGG++ R+ LAR + + LD+P SA+D++ +H
Sbjct: 142 ---LSGGEQQRVQLARVLAQLWQPQPTPRWLFLDEPTSALDLYHQQH 185
>pdb|1OXS|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXT|A Chain A, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXT|B Chain B, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXT|D Chain D, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXU|A Chain A, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXU|B Chain B, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXU|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXV|A Chain A, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXV|B Chain B, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXV|D Chain D, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
Length = 353
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 42/165 (25%), Positives = 70/165 (42%), Gaps = 35/165 (21%)
Query: 105 LTLNAVSITFKPKQLACIIGAIGAGKTSLLHII-------LNELRISSGKVSLGGTVSYA 157
+ L+ V+I + + I+G GAGKT+ + II EL V+ G +
Sbjct: 19 VALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVP 78
Query: 158 SQ--------EPWIFAATIR--QNILFGL-------PYLRRRYADVIRVCALQDDFDSLP 200
+ + W + +NI F L +R+R +V ++ + + P
Sbjct: 79 PEDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLNHFP 138
Query: 201 NGDFTVVGERGASLSGGQKARINLARAVYKNADIYLLDDPLSAVD 245
LSGGQ+ R+ LARA+ K+ + LLD+P S +D
Sbjct: 139 R-----------ELSGGQQQRVALARALVKDPSLLLLDEPFSNLD 172
>pdb|2NQ2|C Chain C, An Inward-Facing Conformation Of A Putative Metal-Chelate
Type Abc Transporter.
pdb|2NQ2|D Chain D, An Inward-Facing Conformation Of A Putative Metal-Chelate
Type Abc Transporter
Length = 253
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 38/130 (29%), Positives = 65/130 (50%), Gaps = 7/130 (5%)
Query: 121 CIIGAIGAGKTSLLHIILNELRISSGKVSLGGTVSYASQ---EPWIFAATIRQNILFGLP 177
++G G GK++LL ++L R GK+ + ++ + Q P FA ++ +L G
Sbjct: 35 AVLGQNGCGKSTLLDLLLGIHRPIQGKIEVYQSIGFVPQFFSSP--FAYSVLDIVLMGRS 92
Query: 178 YLRRRYADVIRVCALQDDFDSLPNGDFTVVGERG-ASLSGGQKARINLARAVYKNADIYL 236
+A + Q +L + T + +R SLSGGQ+ I +ARA+ + L
Sbjct: 93 THINTFAKP-KSHDYQVAMQALDYLNLTHLAKREFTSLSGGQRQLILIARAIASECKLIL 151
Query: 237 LDDPLSAVDM 246
LD+P SA+D+
Sbjct: 152 LDEPTSALDL 161
>pdb|2R6G|A Chain A, The Crystal Structure Of The E. Coli Maltose Transporter
pdb|2R6G|B Chain B, The Crystal Structure Of The E. Coli Maltose Transporter
Length = 381
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 45/178 (25%), Positives = 73/178 (41%), Gaps = 37/178 (20%)
Query: 89 VSLDNVTAQWS--LQNADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSG 146
V L NVT W + + D+ L+ + +G G GK++LL +I I+SG
Sbjct: 4 VQLQNVTKAWGEVVVSKDINLD-----IHEGEFVVFVGPSGCGKSTLLRMIAGLETITSG 58
Query: 147 KVSLGGT-----------VSYASQEPWIFAA-TIRQNILFGL-------PYLRRRYADVI 187
+ +G V Q ++ ++ +N+ FGL + +R V
Sbjct: 59 DLFIGEKRMNDTPPAERGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVA 118
Query: 188 RVCALQDDFDSLPNGDFTVVGERGASLSGGQKARINLARAVYKNADIYLLDDPLSAVD 245
V L D P +LSGGQ+ R+ + R + ++LLD PLS +D
Sbjct: 119 EVLQLAHLLDRKPK-----------ALSGGQRQRVAIGRTLVAEPSVFLLDQPLSNLD 165
>pdb|3TIF|A Chain A, Dimeric Structure Of A Post-Hydrolysis State Of The
Atp-Binding Cassette Mj0796 Bound To Adp And Pi
pdb|3TIF|B Chain B, Dimeric Structure Of A Post-Hydrolysis State Of The
Atp-Binding Cassette Mj0796 Bound To Adp And Pi
Length = 235
Score = 46.6 bits (109), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 46/196 (23%), Positives = 84/196 (42%), Gaps = 41/196 (20%)
Query: 89 VSLDNVTAQWSL-QNADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGK 147
V L NVT + + + L V++ K + I+G G+GK+++L+II + + G+
Sbjct: 2 VKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGE 61
Query: 148 VSLGG-----------------TVSYASQE-PWIFAATIRQNILFGLPY----------L 179
V + + + Q+ I T +N+ L +
Sbjct: 62 VYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEER 121
Query: 180 RRRYADVIRVCALQDDF-DSLPNGDFTVVGERGASLSGGQKARINLARAVYKNADIYLLD 238
R+R + +++ L++ F + PN LSGGQ+ R+ +ARA+ N I L D
Sbjct: 122 RKRALECLKMAELEERFANHKPN-----------QLSGGQQQRVAIARALANNPPIILAD 170
Query: 239 DPLSAVDMHVGKHLFE 254
P A+D G+ + +
Sbjct: 171 QPTWALDSKTGEKIMQ 186
>pdb|2YYZ|A Chain A, Crystal Structure Of Sugar Abc Transporter, Atp-Binding
Protein
Length = 359
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 40/161 (24%), Positives = 69/161 (42%), Gaps = 30/161 (18%)
Query: 107 LNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSLGGT-----------VS 155
++ VS K + ++G G GKT+ L ++ + +SG++ V
Sbjct: 19 VDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGEIYFDDVLVNDIPPKYREVG 78
Query: 156 YASQEPWIFA-ATIRQNILFGLPYLR-------RRYADVIRVCALQDDFDSLPNGDFTVV 207
Q ++ T+ +NI F L R +R ++ R + + D P
Sbjct: 79 MVFQNYALYPHMTVFENIAFPLRARRISKDEVEKRVVEIARKLLIDNLLDRKP------- 131
Query: 208 GERGASLSGGQKARINLARAVYKNADIYLLDDPLSAVDMHV 248
LSGGQ+ R+ LARA+ K + L D+PLS +D ++
Sbjct: 132 ----TQLSGGQQQRVALARALVKQPKVLLFDEPLSNLDANL 168
>pdb|3J16|B Chain B, Models Of Ribosome-Bound Dom34p And Rli1p And Their
Ribosomal Binding Partners
Length = 608
Score = 45.4 bits (106), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 37/148 (25%), Positives = 67/148 (45%), Gaps = 15/148 (10%)
Query: 102 NADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSLGGTVSYASQE- 160
D LN F ++ ++G G GKT+L+ ++ L+ G+ VS Q+
Sbjct: 363 QGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKPDEGQDIPKLNVSMKPQKI 422
Query: 161 PWIFAATIRQNILFGL--PYLRRRY-ADVIRVCALQDDFDSLPNGDFTVVGERGASLSGG 217
F T+RQ + +L ++ DV++ + D ++ + LSGG
Sbjct: 423 APKFPGTVRQLFFKKIRGQFLNPQFQTDVVKPLRIDD-----------IIDQEVQHLSGG 471
Query: 218 QKARINLARAVYKNADIYLLDDPLSAVD 245
+ R+ + A+ ADIYL+D+P + +D
Sbjct: 472 ELQRVAIVLALGIPADIYLIDEPSAYLD 499
Score = 30.8 bits (68), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 21/34 (61%)
Query: 213 SLSGGQKARINLARAVYKNADIYLLDDPLSAVDM 246
LSGG+ R + + + AD+Y+ D+P S +D+
Sbjct: 221 KLSGGELQRFAIGMSCVQEADVYMFDEPSSYLDV 254
>pdb|4HLU|A Chain A, Structure Of The Ecfa-a' Heterodimer Bound To Adp
pdb|4HLU|B Chain B, Structure Of The Ecfa-a' Heterodimer Bound To Adp
Length = 268
Score = 45.4 bits (106), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 39/158 (24%), Positives = 65/158 (41%), Gaps = 29/158 (18%)
Query: 107 LNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSLGGT------------V 154
L VS+ + + G G+GK++LL I+ + +SG V G +
Sbjct: 25 LENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSGDVLYDGERKKGYEIRRNIGI 84
Query: 155 SYASQEPWIFAATIRQNILFGLPYLRRRYADVIRVCALQD-------DFDSLPNGDFTVV 207
++ E FA + + F + + Y D V ++ DFDS +
Sbjct: 85 AFQYPEDQFFAERVFDEVAFAV---KNFYPDRDPVPLVKKAMEFVGLDFDSFKD------ 135
Query: 208 GERGASLSGGQKARINLARAVYKNADIYLLDDPLSAVD 245
LSGG+K R+ +A + DI +LD+PL +D
Sbjct: 136 -RVPFFLSGGEKRRVAIASVIVHEPDILILDEPLVGLD 172
>pdb|2YZ2|A Chain A, Crystal Structure Of The Abc Transporter In The Cobalt
Transport System
pdb|2YZ2|B Chain B, Crystal Structure Of The Abc Transporter In The Cobalt
Transport System
Length = 266
Score = 45.1 bits (105), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 39/158 (24%), Positives = 65/158 (41%), Gaps = 29/158 (18%)
Query: 107 LNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSLGGT------------V 154
L VS+ + + G G+GK++LL I+ + +SG V G +
Sbjct: 23 LENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSGDVLYDGERKKGYEIRRNIGI 82
Query: 155 SYASQEPWIFAATIRQNILFGLPYLRRRYADVIRVCALQD-------DFDSLPNGDFTVV 207
++ E FA + + F + + Y D V ++ DFDS +
Sbjct: 83 AFQYPEDQFFAERVFDEVAFAV---KNFYPDRDPVPLVKKAMEFVGLDFDSFKD------ 133
Query: 208 GERGASLSGGQKARINLARAVYKNADIYLLDDPLSAVD 245
LSGG+K R+ +A + DI +LD+PL +D
Sbjct: 134 -RVPFFLSGGEKRRVAIASVIVHEPDILILDEPLVGLD 170
>pdb|1OXX|K Chain K, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
Length = 353
Score = 44.7 bits (104), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 41/165 (24%), Positives = 69/165 (41%), Gaps = 35/165 (21%)
Query: 105 LTLNAVSITFKPKQLACIIGAIGAGKTSLLHII-------LNELRISSGKVSLGGTVSYA 157
+ L+ V+I + + I+G GAGKT+ + II EL V+ G +
Sbjct: 19 VALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVP 78
Query: 158 SQ--------EPWIFAATIR--QNILFGL-------PYLRRRYADVIRVCALQDDFDSLP 200
+ + W + +NI F L +R+R +V ++ + + P
Sbjct: 79 PEDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLNHFP 138
Query: 201 NGDFTVVGERGASLSGGQKARINLARAVYKNADIYLLDDPLSAVD 245
LSG Q+ R+ LARA+ K+ + LLD+P S +D
Sbjct: 139 R-----------ELSGAQQQRVALARALVKDPSLLLLDEPFSNLD 172
>pdb|2IWH|A Chain A, Structure Of Yeast Elongation Factor 3 In Complex With
Adpnp
pdb|2IWH|B Chain B, Structure Of Yeast Elongation Factor 3 In Complex With
Adpnp
pdb|2IX3|A Chain A, Structure Of Yeast Elongation Factor 3
pdb|2IX3|B Chain B, Structure Of Yeast Elongation Factor 3
Length = 986
Score = 44.3 bits (103), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 41/153 (26%), Positives = 66/153 (43%), Gaps = 29/153 (18%)
Query: 103 ADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILN----------ELRISSGKVSLGG 152
A + LN + K + I G G GK++L+ I N E R + + G
Sbjct: 447 AKILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIANGQVDGFPTQEECRTVYVEHDIDG 506
Query: 153 TVSYASQEPWIFAATIRQNILFGLPYLRRRYADVIRVCALQDDFDSLPNGDFTVVGERGA 212
T S S ++F + + + D + D+ ++P +
Sbjct: 507 THSDTSVLDFVFESGVGT---------KEAIKDKLIEFGFTDEMIAMP----------IS 547
Query: 213 SLSGGQKARINLARAVYKNADIYLLDDPLSAVD 245
+LSGG K ++ LARAV +NADI LLD+P + +D
Sbjct: 548 ALSGGWKMKLALARAVLRNADILLLDEPTNHLD 580
Score = 29.6 bits (65), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 21/32 (65%)
Query: 214 LSGGQKARINLARAVYKNADIYLLDDPLSAVD 245
LSGGQK ++ LA ++ + +LD+P + +D
Sbjct: 902 LSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLD 933
Score = 28.9 bits (63), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 19/75 (25%), Positives = 37/75 (49%), Gaps = 1/75 (1%)
Query: 74 EPRKINSVHSNGKGHVSLDNVTAQWSLQNADLTLNAVSITFKPKQLACIIGAIGAGKTSL 133
EP + V + K V + N+ Q+ + + ++ +IG GAGK++L
Sbjct: 657 EPGYLEGVKTKQKAIVKVTNMEFQYP-GTSKPQITDINFQCSLSSRIAVIGPNGAGKSTL 715
Query: 134 LHIILNELRISSGKV 148
++++ EL +SG+V
Sbjct: 716 INVLTGELLPTSGEV 730
>pdb|1F3O|A Chain A, Crystal Structure Of Mj0796 Atp-Binding Cassette
Length = 235
Score = 43.1 bits (100), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 45/196 (22%), Positives = 81/196 (41%), Gaps = 41/196 (20%)
Query: 89 VSLDNVTAQWSL-QNADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGK 147
+ L NVT + + L V++ K + I G G+GK++ L+II + + G+
Sbjct: 2 IKLKNVTKTYKXGEEIIYALKNVNLNIKEGEFVSIXGPSGSGKSTXLNIIGCLDKPTEGE 61
Query: 148 VSLGG-----------------TVSYASQE-PWIFAATIRQNILFGLPY----------L 179
V + + + Q+ I T +N+ L +
Sbjct: 62 VYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAXSGEER 121
Query: 180 RRRYADVIRVCALQDDF-DSLPNGDFTVVGERGASLSGGQKARINLARAVYKNADIYLLD 238
R+R + ++ L++ F + PN LSGGQ+ R+ +ARA+ N I L D
Sbjct: 122 RKRALECLKXAELEERFANHKPN-----------QLSGGQQQRVAIARALANNPPIILAD 170
Query: 239 DPLSAVDMHVGKHLFE 254
+P A+D G+ + +
Sbjct: 171 EPTGALDSKTGEKIXQ 186
>pdb|2IHY|A Chain A, Structure Of The Staphylococcus Aureus Putative Atpase
Subunit Of An Atp-Binding Cassette (Abc) Transporter
pdb|2IHY|B Chain B, Structure Of The Staphylococcus Aureus Putative Atpase
Subunit Of An Atp-Binding Cassette (Abc) Transporter
Length = 279
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 43/151 (28%), Positives = 68/151 (45%), Gaps = 32/151 (21%)
Query: 121 CIIGAIGAGKTSLLHIILNELRISSGKVSL----GGTVSYASQEPWIFAATIRQNILFGL 176
+ G GAGKT+LL+I+ +SG V+L G V Y+ A T+RQ+I F
Sbjct: 51 ILYGLNGAGKTTLLNILNAYEPATSGTVNLFGKXPGKVGYS-------AETVRQHIGFVS 103
Query: 177 PYLRRRYADVIRVCAL------------QDDFDSLPNGDFTVVGERGAS---------LS 215
L ++ + RV + QD D + N ++ G S LS
Sbjct: 104 HSLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEIRNEAHQLLKLVGXSAKAQQYIGYLS 163
Query: 216 GGQKARINLARAVYKNADIYLLDDPLSAVDM 246
G+K R+ +ARA+ + +LD+P + +D
Sbjct: 164 TGEKQRVXIARALXGQPQVLILDEPAAGLDF 194
>pdb|2D62|A Chain A, Crystal Structure Of Multiple Sugar Binding Transport Atp-
Binding Protein
Length = 375
Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 42/187 (22%), Positives = 70/187 (37%), Gaps = 41/187 (21%)
Query: 85 GKGHVSLDNVTAQWSLQNADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRIS 144
G V L N+ W + +S+ K + ++G G GKT+ L I +
Sbjct: 3 GXAEVKLINI---WKRFGDVTAVKDLSLEIKDGEFLVLLGPSGCGKTTTLRXIAGLEEPT 59
Query: 145 SGKVSLGGTVSYASQEPWIFAA-------------------TIRQNILFGLPYLR----- 180
G++ + + A E +F T+ NI F L +
Sbjct: 60 RGQIYIEDNL-VADPEKGVFVPPKERDVAXVFQSYALYPHXTVYDNIAFPLKLRKVPKQE 118
Query: 181 --RRYADVIRVCALQDDFDSLPNGDFTVVGERGASLSGGQKARINLARAVYKNADIYLLD 238
+R +V L + + P LSGGQ+ R+ L RA+ + ++L D
Sbjct: 119 IDKRVREVAEXLGLTELLNRKPR-----------ELSGGQRQRVALGRAIIRRPKVFLXD 167
Query: 239 DPLSAVD 245
+PLS +D
Sbjct: 168 EPLSNLD 174
>pdb|2IW3|A Chain A, Elongation Factor 3 In Complex With Adp
pdb|2IW3|B Chain B, Elongation Factor 3 In Complex With Adp
Length = 986
Score = 42.0 bits (97), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 19/34 (55%), Positives = 27/34 (79%)
Query: 212 ASLSGGQKARINLARAVYKNADIYLLDDPLSAVD 245
++LSGG K ++ LARAV +NADI LLD+P + +D
Sbjct: 547 SALSGGWKXKLALARAVLRNADILLLDEPTNHLD 580
Score = 29.3 bits (64), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 21/32 (65%)
Query: 214 LSGGQKARINLARAVYKNADIYLLDDPLSAVD 245
LSGGQK ++ LA ++ + +LD+P + +D
Sbjct: 902 LSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLD 933
Score = 28.9 bits (63), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 21/28 (75%)
Query: 121 CIIGAIGAGKTSLLHIILNELRISSGKV 148
+IG GAGK++L++++ EL +SG+V
Sbjct: 703 AVIGPNGAGKSTLINVLTGELLPTSGEV 730
>pdb|2IX8|A Chain A, Model For Eef3 Bound To An 80s Ribosome
Length = 976
Score = 42.0 bits (97), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 19/34 (55%), Positives = 27/34 (79%)
Query: 212 ASLSGGQKARINLARAVYKNADIYLLDDPLSAVD 245
++LSGG K ++ LARAV +NADI LLD+P + +D
Sbjct: 541 SALSGGWKXKLALARAVLRNADILLLDEPTNHLD 574
Score = 29.3 bits (64), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 21/32 (65%)
Query: 214 LSGGQKARINLARAVYKNADIYLLDDPLSAVD 245
LSGGQK ++ LA ++ + +LD+P + +D
Sbjct: 896 LSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLD 927
Score = 28.5 bits (62), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 21/28 (75%)
Query: 121 CIIGAIGAGKTSLLHIILNELRISSGKV 148
+IG GAGK++L++++ EL +SG+V
Sbjct: 697 AVIGPNGAGKSTLINVLTGELLPTSGEV 724
>pdb|3BK7|A Chain A, Structure Of The Complete Abce1RNAASE-L Inhibitor Protein
From Pyrococcus Abysii
Length = 607
Score = 41.6 bits (96), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 34/137 (24%), Positives = 56/137 (40%), Gaps = 29/137 (21%)
Query: 122 IIGAIGAGKTSLLHIILNELRISSGKVSLGGTVSYASQEPWIFAATIRQNILFGLPYLRR 181
I+G G GKT+ + ++ + GKV TV+Y Q Y++
Sbjct: 387 IVGPNGIGKTTFVKMLAGVEEPTEGKVEWDLTVAYKPQ------------------YIKA 428
Query: 182 RYADVIRVCALQDDFDSL-----------PNGDFTVVGERGASLSGGQKARINLARAVYK 230
Y + + D L P G + LSGG+ R+ +A + +
Sbjct: 429 EYEGTVYELLSKIDSSKLNSNFYKTELLKPLGIIDLYDRNVEDLSGGELQRVAIAATLLR 488
Query: 231 NADIYLLDDPLSAVDMH 247
+ADIYLLD+P + +D+
Sbjct: 489 DADIYLLDEPSAYLDVE 505
Score = 30.8 bits (68), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 21/34 (61%)
Query: 213 SLSGGQKARINLARAVYKNADIYLLDDPLSAVDM 246
LSGG+ R+ +A A+ + A Y D+P S +D+
Sbjct: 228 QLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDI 261
>pdb|2PCJ|A Chain A, Crystal Structure Of Abc Transporter (Aq_297) From Aquifex
Aeolicus Vf5
pdb|2PCJ|B Chain B, Crystal Structure Of Abc Transporter (Aq_297) From Aquifex
Aeolicus Vf5
pdb|2PCL|A Chain A, Crystal Structure Of Abc Transporter With Complex (Aq_297)
From Aquifex Aeolicus Vf5
Length = 224
Score = 41.6 bits (96), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 39/159 (24%), Positives = 69/159 (43%), Gaps = 26/159 (16%)
Query: 107 LNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSL-GGTVSYASQEPWIFA 165
L +S++ K + IIGA G+GK++LL+I+ + GKV L G V Y +++
Sbjct: 20 LKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTEGKVFLEGKEVDYTNEKELSLL 79
Query: 166 ATIRQNILFGLPYLRRRYADVIRVCALQDDFDSL-----PNGDFTVVGE----------- 209
+ +F YL + + AL++ + P + GE
Sbjct: 80 RNRKLGFVFQFHYL------IPELTALENVIVPMLKMGKPKKEAKERGEYLLSELGLGDK 133
Query: 210 ---RGASLSGGQKARINLARAVYKNADIYLLDDPLSAVD 245
+ LSGG++ R+ +ARA+ + D+P +D
Sbjct: 134 LSRKPYELSGGEQQRVAIARALANEPILLFADEPTGNLD 172
>pdb|3J15|B Chain B, Model Of Ribosome-Bound Archaeal Pelota And Abce1
Length = 593
Score = 41.6 bits (96), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 34/137 (24%), Positives = 56/137 (40%), Gaps = 29/137 (21%)
Query: 122 IIGAIGAGKTSLLHIILNELRISSGKVSLGGTVSYASQEPWIFAATIRQNILFGLPYLRR 181
I+G G GKT+ + ++ + GKV TV+Y Q Y++
Sbjct: 373 IVGPNGIGKTTFVKMLAGVEEPTEGKVEWDLTVAYKPQ------------------YIKA 414
Query: 182 RYADVIRVCALQDDFDSL-----------PNGDFTVVGERGASLSGGQKARINLARAVYK 230
Y + + D L P G + LSGG+ R+ +A + +
Sbjct: 415 EYEGTVYELLSKIDSSKLNSNFYKTELLKPLGIIDLYDRNVEDLSGGELQRVAIAATLLR 474
Query: 231 NADIYLLDDPLSAVDMH 247
+ADIYLLD+P + +D+
Sbjct: 475 DADIYLLDEPSAYLDVE 491
Score = 30.8 bits (68), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 21/35 (60%)
Query: 213 SLSGGQKARINLARAVYKNADIYLLDDPLSAVDMH 247
LSGG+ R+ +A A+ + A Y D+P S +D+
Sbjct: 214 QLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIR 248
>pdb|3GFO|A Chain A, Structure Of Cbio1 From Clostridium Perfringens: Part Of
The Abc Transporter Complex Cbionq
Length = 275
Score = 41.2 bits (95), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 36/172 (20%), Positives = 75/172 (43%), Gaps = 35/172 (20%)
Query: 98 WSLQNADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKV--------- 148
++ + L +++ K ++ I+G G GK++L L+ SSG++
Sbjct: 15 YNYSDGTHALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRILFDNKPIDY 74
Query: 149 ------SLGGTVSYASQEP--WIFAATIRQNILFG-----LP--YLRRRYADVIRVCALQ 193
L ++ Q+P +F+A++ Q++ FG LP +R+R + ++ ++
Sbjct: 75 SRKGIMKLRESIGIVFQDPDNQLFSASVYQDVSFGAVNMKLPEDEIRKRVDNALKRTGIE 134
Query: 194 DDFDSLPNGDFTVVGERGASLSGGQKARINLARAVYKNADIYLLDDPLSAVD 245
D + LS GQK R+ +A + + +LD+P + +D
Sbjct: 135 HLKDKPTH-----------CLSFGQKKRVAIAGVLVMEPKVLILDEPTAGLD 175
>pdb|1B0U|A Chain A, Atp-Binding Subunit Of The Histidine Permease From
Salmonella Typhimurium
Length = 262
Score = 40.8 bits (94), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 27/43 (62%)
Query: 203 DFTVVGERGASLSGGQKARINLARAVYKNADIYLLDDPLSAVD 245
D G+ LSGGQ+ R+++ARA+ D+ L D+P SA+D
Sbjct: 143 DERAQGKYPVHLSGGQQQRVSIARALAMEPDVLLFDEPTSALD 185
>pdb|3C41|J Chain J, Abc Protein Artp In Complex With Amp-PnpMG2+
pdb|3C41|K Chain K, Abc Protein Artp In Complex With Amp-PnpMG2+
Length = 242
Score = 40.8 bits (94), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 37/164 (22%), Positives = 69/164 (42%), Gaps = 35/164 (21%)
Query: 106 TLNAVSITFKPKQLACIIGAIGAGKTSLL------------HIILNELRISSGKVSLGGT 153
L +++ + ++ +IG G+GK++ L II++ + + + +L
Sbjct: 18 VLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLNKV 77
Query: 154 ---VSYASQEPWIFA-ATIRQNILFGLPYLRR--------RYADVIRVCALQDDFDSLPN 201
V Q +F T+ NI +R+ + +++ L+D + P+
Sbjct: 78 REEVGMVFQRFNLFPHMTVLNNITLAPMKVRKWPREKAEAKAMELLDKVGLKDKAHAYPD 137
Query: 202 GDFTVVGERGASLSGGQKARINLARAVYKNADIYLLDDPLSAVD 245
SLSGGQ R+ +ARA+ I L D+P SA+D
Sbjct: 138 -----------SLSGGQAQRVAIARALAMEPKIMLFDEPTSALD 170
>pdb|2OLJ|A Chain A, Abc Protein Artp In Complex With AdpMG2+
pdb|2OLJ|B Chain B, Abc Protein Artp In Complex With AdpMG2+
pdb|2OLK|A Chain A, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|B Chain B, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|C Chain C, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|D Chain D, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OUK|A Chain A, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|B Chain B, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|C Chain C, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|D Chain D, Abc Protein Artp In Complex With Sulphate
pdb|2Q0H|A Chain A, Abc Protein Artp In Complex With AdpMG2+, ATP-Gamma-S
Hydrolyzed
pdb|2Q0H|B Chain B, Abc Protein Artp In Complex With AdpMG2+, ATP-Gamma-S
Hydrolyzed
pdb|3C4J|A Chain A, Abc Protein Artp In Complex With Atp-Gamma-S
pdb|3C4J|B Chain B, Abc Protein Artp In Complex With Atp-Gamma-S
Length = 263
Score = 40.8 bits (94), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 37/164 (22%), Positives = 69/164 (42%), Gaps = 35/164 (21%)
Query: 106 TLNAVSITFKPKQLACIIGAIGAGKTSLL------------HIILNELRISSGKVSLGGT 153
L +++ + ++ +IG G+GK++ L II++ + + + +L
Sbjct: 39 VLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLNKV 98
Query: 154 ---VSYASQEPWIFA-ATIRQNILFGLPYLRR--------RYADVIRVCALQDDFDSLPN 201
V Q +F T+ NI +R+ + +++ L+D + P+
Sbjct: 99 REEVGMVFQRFNLFPHMTVLNNITLAPMKVRKWPREKAEAKAMELLDKVGLKDKAHAYPD 158
Query: 202 GDFTVVGERGASLSGGQKARINLARAVYKNADIYLLDDPLSAVD 245
SLSGGQ R+ +ARA+ I L D+P SA+D
Sbjct: 159 -----------SLSGGQAQRVAIARALAMEPKIMLFDEPTSALD 191
>pdb|1G6H|A Chain A, Crystal Structure Of The Adp Conformation Of Mj1267, An
Atp- Binding Cassette Of An Abc Transporter
Length = 257
Score = 40.8 bits (94), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 37/175 (21%), Positives = 70/175 (40%), Gaps = 50/175 (28%)
Query: 107 LNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSL---------------- 150
L+ VSI+ + IIG G+GK++L+++I L+ G+V
Sbjct: 23 LDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHY 82
Query: 151 GGTVSYASQEPWIFAATIRQNILFGLPYLRRRYADVIRVCALQDDFDSL------PNGDF 204
G ++ + +P + T+ +N+L G +C + +SL P +
Sbjct: 83 GIVRTFQTPQP-LKEMTVLENLLIG------------EICPGESPLNSLFYKKWIPKEEE 129
Query: 205 TV---------------VGERGASLSGGQKARINLARAVYKNADIYLLDDPLSAV 244
V + LSGGQ + + RA+ N + ++D+P++ V
Sbjct: 130 MVEKAFKILEFLKLSHLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDEPIAGV 184
>pdb|1YQT|A Chain A, Rnase-L Inhibitor
Length = 538
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/138 (24%), Positives = 59/138 (42%), Gaps = 15/138 (10%)
Query: 114 FKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSLGGTVSYASQEPWIFAATIRQNIL 173
K ++ I+G G GKT+ + + + GK+ TV+Y Q + + +
Sbjct: 309 IKKGEVIGIVGPNGIGKTTFVKXLAGVEEPTEGKIEWDLTVAYKPQ----YIKADYEGTV 364
Query: 174 FGLPYLRRRYADVIRVCALQDDFDSL----PNGDFTVVGERGASLSGGQKARINLARAVY 229
+ L I L +F P G + LSGG+ R+ +A +
Sbjct: 365 YEL-------LSKIDASKLNSNFYKTELLKPLGIIDLYDREVNELSGGELQRVAIAATLL 417
Query: 230 KNADIYLLDDPLSAVDMH 247
++ADIYLLD+P + +D+
Sbjct: 418 RDADIYLLDEPSAYLDVE 435
Score = 32.7 bits (73), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 22/34 (64%)
Query: 214 LSGGQKARINLARAVYKNADIYLLDDPLSAVDMH 247
LSGG+ R+ +A A+ +NA Y D+P S +D+
Sbjct: 159 LSGGELQRVAIAAALLRNATFYFFDEPSSYLDIR 192
>pdb|1SGW|A Chain A, Putative Abc Transporter (Atp-Binding Protein) From
Pyrococcus Furiosus Pfu-867808-001
Length = 214
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/147 (24%), Positives = 65/147 (44%), Gaps = 14/147 (9%)
Query: 107 LNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKV--------SLGGTVSYAS 158
L +++T + + G G GKT+LL I L+ G++ + G + +
Sbjct: 25 LERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPITKVKGKIFFLP 84
Query: 159 QEPWIFAATIRQNILFGLPYLRRRYADVIRVCALQDDFDSLPNGDFTVVGERGASLSGGQ 218
+E + ++ L + L Y + + D +S+ D ++ LS G
Sbjct: 85 EEIIVPRKISVEDYLKAVASL---YGVKVNKNEIMDALESVEVLDLK---KKLGELSQGT 138
Query: 219 KARINLARAVYKNADIYLLDDPLSAVD 245
R+ LA + NA+IY+LDDP+ A+D
Sbjct: 139 IRRVQLASTLLVNAEIYVLDDPVVAID 165
>pdb|1GAJ|A Chain A, Crystal Structure Of A Nucleotide-Free Atp-Binding
Cassette From An Abc Transporter
Length = 257
Score = 38.1 bits (87), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 40/177 (22%), Positives = 75/177 (42%), Gaps = 26/177 (14%)
Query: 107 LNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSL---------------- 150
L+ VSI+ + IIG G+GK++L+++I L+ G+V
Sbjct: 23 LDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHY 82
Query: 151 GGTVSYASQEPWIFAATIRQNILFGL------PYLRRRYADVI--RVCALQDDFDSLPNG 202
G ++ + +P + T+ +N+L G P Y I ++ F L
Sbjct: 83 GIVRTFQTPQP-LKEMTVLENLLIGEINPGESPLNSLFYKKWIPKEEEMVEKAFKILEFL 141
Query: 203 DFTVVGERGA-SLSGGQKARINLARAVYKNADIYLLDDPLSAVDMHVGKHLFEDCIS 258
+ + +R A LSGGQ + + RA+ N + ++D P++ V + +F +
Sbjct: 142 KLSHLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDQPIAGVAPGLAHDIFNHVLE 198
>pdb|1G9X|A Chain A, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
pdb|1G9X|B Chain B, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
pdb|1G9X|C Chain C, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
Length = 257
Score = 37.7 bits (86), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 39/163 (23%), Positives = 72/163 (44%), Gaps = 26/163 (15%)
Query: 107 LNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSL---------------- 150
L+ VSI+ + IIG G+GK++L+++I L+ G+V
Sbjct: 23 LDGVSISVCKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHY 82
Query: 151 GGTVSYASQEPWIFAATIRQNILFGL------PYLRRRYADVI--RVCALQDDFDSLPNG 202
G ++ + +P + T+ +N+L G P Y I ++ F L
Sbjct: 83 GIVRTFQTPQP-LKEMTVLENLLIGEINPGESPLNSLFYKKWIPKEEEMVEKAFKILEFL 141
Query: 203 DFTVVGERGA-SLSGGQKARINLARAVYKNADIYLLDDPLSAV 244
+ + +R A LSGGQ + + RA+ N + ++D+P++ V
Sbjct: 142 KLSHLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDEPIAGV 184
>pdb|1VPL|A Chain A, Crystal Structure Of Abc Transporter Atp-binding Protein
(tm0544) From Thermotoga Maritima At 2.10 A Resolution
Length = 256
Score = 37.7 bits (86), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 37/159 (23%), Positives = 70/159 (44%), Gaps = 29/159 (18%)
Query: 107 LNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSLGGT------------V 154
L +S + ++ +IG GAGKT+ L II ++ SSG V++ G +
Sbjct: 31 LKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVEEPHEVRKLI 90
Query: 155 SYASQEPWIFAATIRQNILFGLPYLR-------RRYADVIRVCALQDDFDSLPNGDFTVV 207
SY +E + + G+ YLR +++ + + L +
Sbjct: 91 SYLPEEAGAYRN------MQGIEYLRFVAGFYASSSSEIEEMVERATEIAGLGEK----I 140
Query: 208 GERGASLSGGQKARINLARAVYKNADIYLLDDPLSAVDM 246
+R ++ S G ++ +ARA+ N + +LD+P S +D+
Sbjct: 141 KDRVSTYSKGMVRKLLIARALMVNPRLAILDEPTSGLDV 179
>pdb|3OZX|A Chain A, Crystal Structure Of Abce1 Of Sulfolubus Solfataricus
(-Fes Domain)
pdb|3OZX|B Chain B, Crystal Structure Of Abce1 Of Sulfolubus Solfataricus
(-Fes Domain)
Length = 538
Score = 36.6 bits (83), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 33/135 (24%), Positives = 61/135 (45%), Gaps = 9/135 (6%)
Query: 115 KPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSLGGTV-SYASQEPWI-FAATIRQNI 172
K ++ I+G G GKT+ I++ E+ G V+ + SY Q + + T++Q
Sbjct: 292 KEGEIIGILGPNGIGKTTFARILVGEITADEGSVTPEKQILSYKPQRIFPNYDGTVQQ-- 349
Query: 173 LFGLPYLRRRYADVIRVCALQDDFDSLPNGDFTVVGERGASLSGGQKARINLARAVYKNA 232
YL D + + + + ++ LSGG+ ++ +A + K A
Sbjct: 350 -----YLENASKDALSTSSWFFEEVTKRLNLHRLLESNVNDLSGGELQKLYIAATLAKEA 404
Query: 233 DIYLLDDPLSAVDMH 247
D+Y+LD P S +D+
Sbjct: 405 DLYVLDQPSSYLDVE 419
Score = 29.6 bits (65), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 22/34 (64%)
Query: 214 LSGGQKARINLARAVYKNADIYLLDDPLSAVDMH 247
LSGG R+ +A ++ + AD+Y+ D P S +D+
Sbjct: 139 LSGGGLQRLLVAASLLREADVYIFDQPSSYLDVR 172
>pdb|1JI0|A Chain A, Crystal Structure Analysis Of The Abc Transporter From
Thermotoga Maritima
Length = 240
Score = 34.3 bits (77), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 37/142 (26%), Positives = 60/142 (42%), Gaps = 27/142 (19%)
Query: 118 QLACIIGAIGAGKTSLLHIILNELRISSGKVSLGGT--------------VSYASQEPWI 163
Q+ +IGA GAGKT+ L I +R GK+ G ++ + I
Sbjct: 33 QIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRXGIALVPEGRRI 92
Query: 164 FAA-TIRQNILFGLPYLRRRYADVIRVCALQDDFDSLPNGDFTVVGER----GASLSGGQ 218
F T+ +N+ G Y R+ + R L+ F P + ER G +LSGG+
Sbjct: 93 FPELTVYENLXXG-AYNRKDKEGIKR--DLEWIFSLFPR-----LKERLKQLGGTLSGGE 144
Query: 219 KARINLARAVYKNADIYLLDDP 240
+ + + RA+ + D+P
Sbjct: 145 QQXLAIGRALXSRPKLLXXDEP 166
>pdb|4FWI|B Chain B, Crystal Structure Of The Nucleotide-binding Domain Of A
Dipeptide Abc Transporter
Length = 334
Score = 33.1 bits (74), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 26/42 (61%)
Query: 213 SLSGGQKARINLARAVYKNADIYLLDDPLSAVDMHVGKHLFE 254
LSGG K R+ +A A+ + + +LD+P SA+D+ H+ +
Sbjct: 154 QLSGGMKQRVLIALALLLDPVVLILDEPTSALDVLTQAHIIQ 195
>pdb|1HQC|A Chain A, Structure Of Ruvb From Thermus Thermophilus Hb8
pdb|1HQC|B Chain B, Structure Of Ruvb From Thermus Thermophilus Hb8
Length = 324
Score = 33.1 bits (74), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 42/87 (48%), Gaps = 3/87 (3%)
Query: 90 SLDNVTAQWSL-QNADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKV 148
+LD Q L Q + L A +P + + G G GKT+L H+I +EL ++ +V
Sbjct: 10 TLDEYIGQERLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAHELGVNL-RV 68
Query: 149 SLGGTVSYASQEPWIFAATIRQ-NILF 174
+ G + I A ++ + +ILF
Sbjct: 69 TSGPAIEKPGDLAAILANSLEEGDILF 95
>pdb|1IXS|B Chain B, Structure Of Ruvb Complexed With Ruva Domain Iii
Length = 318
Score = 33.1 bits (74), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 42/87 (48%), Gaps = 3/87 (3%)
Query: 90 SLDNVTAQWSL-QNADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKV 148
+LD Q L Q + L A +P + + G G GKT+L H+I +EL ++ +V
Sbjct: 10 TLDEYIGQERLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAHELGVNL-RV 68
Query: 149 SLGGTVSYASQEPWIFAATIRQ-NILF 174
+ G + I A ++ + +ILF
Sbjct: 69 TSGPAIEKPGDLAAILANSLEEGDILF 95
>pdb|1IXR|C Chain C, Ruva-Ruvb Complex
Length = 312
Score = 32.7 bits (73), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 42/87 (48%), Gaps = 3/87 (3%)
Query: 90 SLDNVTAQWSL-QNADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKV 148
+LD Q L Q + L A +P + + G G GKT+L H+I +EL ++ +V
Sbjct: 10 TLDEYIGQERLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAHELGVNL-RV 68
Query: 149 SLGGTVSYASQEPWIFAATIRQ-NILF 174
+ G + I A ++ + +ILF
Sbjct: 69 TSGPAIEKPGDLAAILANSLEEGDILF 95
>pdb|4DCS|A Chain A, Crystal Structure Of B. Subtilis Enga In Complex With
Sulfate Ion And Gdp
pdb|4DCT|A Chain A, Crystal Structure Of B. Subtilis Enga In Complex With
Half-Occupacy Gdp
pdb|4DCU|A Chain A, Crystal Structure Of B. Subtilis Enga In Complex With Gdp
pdb|4DCV|A Chain A, Crystal Structure Of B. Subtilis Enga In Complex With
Gmppcp
Length = 456
Score = 31.6 bits (70), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 37/80 (46%), Gaps = 8/80 (10%)
Query: 64 VLNFLLLGEHEPRKINSVHSNGKGHVSLDNVTAQWSLQNADLTLNAVSITFKPKQLACII 123
+ +F LG EP I+ H G G + LD V + + N I F C+I
Sbjct: 150 IYDFYSLGFGEPYPISGTHGLGLGDL-LDAVAEHFK-NIPETKYNEEVIQF------CLI 201
Query: 124 GAIGAGKTSLLHIILNELRI 143
G GK+SL++ +L E R+
Sbjct: 202 GRPNVGKSSLVNAMLGEERV 221
>pdb|2PJZ|A Chain A, The Crystal Structure Of Putative Cobalt Transport Atp-
Binding Protein (cbio-2), St1066
Length = 263
Score = 31.2 bits (69), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 41/170 (24%), Positives = 73/170 (42%), Gaps = 29/170 (17%)
Query: 84 NGKGHVSLDNVTAQWSLQNADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRI 143
+GKG+ ++SL+N +L +N + I+G G+GKT+LL I + L
Sbjct: 12 SGKGY-------ERFSLENINLEVNGEKV--------IILGPNGSGKTTLLRAI-SGLLP 55
Query: 144 SSGKVSLGGT--------VSYASQEPWIFAATIRQNILFGLPYLRRRYADVIRVCALQDD 195
SG + + G + Y++ P + + N + YL + R L+
Sbjct: 56 YSGNIFINGMEVRKIRNYIRYSTNLPEAYEIGVTVN---DIVYLYEELKGLDRDLFLEM- 111
Query: 196 FDSLPNGDFTVVGERGASLSGGQKARINLARAVYKNADIYLLDDPLSAVD 245
+L G+ ++ + LS GQ + + A+ +I LD+P VD
Sbjct: 112 LKALKLGE-EILRRKLYKLSAGQSVLVRTSLALASQPEIVGLDEPFENVD 160
>pdb|2HJG|A Chain A, The Crystal Structure Of The B. Subtilis Yphc Gtpase In
Complex With Gdp
Length = 436
Score = 30.4 bits (67), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 36/80 (45%), Gaps = 8/80 (10%)
Query: 64 VLNFLLLGEHEPRKINSVHSNGKGHVSLDNVTAQWSLQNADLTLNAVSITFKPKQLACII 123
+ +F LG EP I+ H G G + LD V + + N I F C+I
Sbjct: 130 IYDFYSLGFGEPYPISGTHGLGLGDL-LDAVAEHFK-NIPETKYNEEVIQF------CLI 181
Query: 124 GAIGAGKTSLLHIILNELRI 143
G GK+SL++ L E R+
Sbjct: 182 GRPNVGKSSLVNAXLGEERV 201
>pdb|1CKX|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator:
Solution Structures Of Peptides Based On The Phe508
Region, The Most Common Site Of Disease-Causing
Delta-F508 Mutation
pdb|1CKY|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator:
Solution Structures Of Peptides Based On The Phe508
Region, The Most Common Site Of Disease-Causing
Delta-F508 Mutation
Length = 26
Score = 28.5 bits (62), Expect = 3.8, Method: Composition-based stats.
Identities = 11/23 (47%), Positives = 16/23 (69%)
Query: 166 ATIRQNILFGLPYLRRRYADVIR 188
TI++NI+FG+ Y RY VI+
Sbjct: 3 GTIKENIIFGVSYDEYRYRSVIK 25
>pdb|1IN5|A Chain A, Thermogota Maritima Ruvb A156s Mutant
Length = 334
Score = 28.5 bits (62), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 32/64 (50%), Gaps = 5/64 (7%)
Query: 90 SLDNVTAQWSLQNA-DLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELR----IS 144
SLD Q +++ L L A + + + G G GKT+L HII +EL+ ++
Sbjct: 23 SLDEFIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVT 82
Query: 145 SGKV 148
SG V
Sbjct: 83 SGPV 86
>pdb|1IN4|A Chain A, Thermotoga Maritima Ruvb Holliday Junction Branch
Migration Motor
Length = 334
Score = 28.5 bits (62), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 32/64 (50%), Gaps = 5/64 (7%)
Query: 90 SLDNVTAQWSLQNA-DLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELR----IS 144
SLD Q +++ L L A + + + G G GKT+L HII +EL+ ++
Sbjct: 23 SLDEFIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVT 82
Query: 145 SGKV 148
SG V
Sbjct: 83 SGPV 86
>pdb|1IN8|A Chain A, Thermotoga Maritima Ruvb T158v
Length = 334
Score = 28.5 bits (62), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 32/64 (50%), Gaps = 5/64 (7%)
Query: 90 SLDNVTAQWSLQNA-DLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELR----IS 144
SLD Q +++ L L A + + + G G GKT+L HII +EL+ ++
Sbjct: 23 SLDEFIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVT 82
Query: 145 SGKV 148
SG V
Sbjct: 83 SGPV 86
>pdb|1J7K|A Chain A, Thermotoga Maritima Ruvb P216g Mutant
Length = 334
Score = 28.5 bits (62), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 32/64 (50%), Gaps = 5/64 (7%)
Query: 90 SLDNVTAQWSLQNA-DLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELR----IS 144
SLD Q +++ L L A + + + G G GKT+L HII +EL+ ++
Sbjct: 23 SLDEFIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVT 82
Query: 145 SGKV 148
SG V
Sbjct: 83 SGPV 86
>pdb|1IN7|A Chain A, Thermotoga Maritima Ruvb R170a
Length = 334
Score = 28.5 bits (62), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 32/64 (50%), Gaps = 5/64 (7%)
Query: 90 SLDNVTAQWSLQNA-DLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELR----IS 144
SLD Q +++ L L A + + + G G GKT+L HII +EL+ ++
Sbjct: 23 SLDEFIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVT 82
Query: 145 SGKV 148
SG V
Sbjct: 83 SGPV 86
>pdb|4IXN|A Chain A, Crystal Structure Of Zn(ii)-bound E37a,c66a,c67a Triple
Mutant Yjia Gtpase
pdb|4IXN|B Chain B, Crystal Structure Of Zn(ii)-bound E37a,c66a,c67a Triple
Mutant Yjia Gtpase
Length = 318
Score = 28.1 bits (61), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 17/27 (62%)
Query: 114 FKPKQLACIIGAIGAGKTSLLHIILNE 140
P + + G +GAGKT+LL ILNE
Sbjct: 1 MNPIAVTLLTGFLGAGKTTLLRHILNE 27
>pdb|1NIJ|A Chain A, Yjia Protein
pdb|4IXM|A Chain A, Crystal Structure Of Zn(ii)-bound Yjia Gtpase From E. Coli
pdb|4IXM|B Chain B, Crystal Structure Of Zn(ii)-bound Yjia Gtpase From E. Coli
Length = 318
Score = 27.7 bits (60), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 17/27 (62%)
Query: 114 FKPKQLACIIGAIGAGKTSLLHIILNE 140
P + + G +GAGKT+LL ILNE
Sbjct: 1 MNPIAVTLLTGFLGAGKTTLLRHILNE 27
>pdb|3VI3|B Chain B, Crystal Structure Of Alpha5beta1 Integrin Headpiece
(Ligand-Free Form)
pdb|3VI3|D Chain D, Crystal Structure Of Alpha5beta1 Integrin Headpiece
(Ligand-Free Form)
pdb|3VI4|B Chain B, Crystal Structure Of Alpha5beta1 Integrin Headpiece In
Complex With Rgd Peptide
pdb|3VI4|D Chain D, Crystal Structure Of Alpha5beta1 Integrin Headpiece In
Complex With Rgd Peptide
Length = 454
Score = 27.7 bits (60), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 40/72 (55%), Gaps = 14/72 (19%)
Query: 101 QNADLTLNAVSITFKP--KQLACII-----GAIGAGKTSLLHIILN-------ELRISSG 146
+N T+ AV+ F+P K+L +I G + A ++++ +I++ E+ + +G
Sbjct: 308 ENNIQTIFAVTEEFQPVYKELKNLIPKSAVGTLSANSSNVIQLIIDAYNSLSSEVILENG 367
Query: 147 KVSLGGTVSYAS 158
K+S G T+SY S
Sbjct: 368 KLSEGVTISYKS 379
>pdb|1IN6|A Chain A, Thermotoga Maritima Ruvb K64r Mutant
Length = 334
Score = 27.3 bits (59), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 32/64 (50%), Gaps = 5/64 (7%)
Query: 90 SLDNVTAQWSLQNA-DLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELR----IS 144
SLD Q +++ L L A + + + G G G+T+L HII +EL+ ++
Sbjct: 23 SLDEFIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGRTTLAHIIASELQTNIHVT 82
Query: 145 SGKV 148
SG V
Sbjct: 83 SGPV 86
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.324 0.139 0.414
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,623,687
Number of Sequences: 62578
Number of extensions: 298116
Number of successful extensions: 893
Number of sequences better than 100.0: 106
Number of HSP's better than 100.0 without gapping: 93
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 690
Number of HSP's gapped (non-prelim): 137
length of query: 265
length of database: 14,973,337
effective HSP length: 97
effective length of query: 168
effective length of database: 8,903,271
effective search space: 1495749528
effective search space used: 1495749528
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 50 (23.9 bits)