Query psy1503
Match_columns 265
No_of_seqs 303 out of 2748
Neff 7.5
Searched_HMMs 46136
Date Fri Aug 16 18:36:53 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1503.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/1503hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0054|consensus 100.0 4.8E-68 1.1E-72 545.0 29.7 265 1-265 395-695 (1381)
2 PLN03130 ABC transporter C fam 100.0 8E-59 1.7E-63 493.9 32.5 263 1-264 494-791 (1622)
3 KOG0058|consensus 100.0 4.4E-58 9.5E-63 442.5 28.2 202 62-264 439-654 (716)
4 PLN03232 ABC transporter C fam 100.0 1.7E-57 3.8E-62 482.4 32.7 263 1-264 494-791 (1495)
5 TIGR02868 CydC thiol reductant 100.0 3.5E-55 7.6E-60 424.2 32.6 200 62-264 305-520 (529)
6 PRK11174 cysteine/glutathione 100.0 3.3E-54 7.2E-59 422.2 31.0 199 62-264 322-535 (588)
7 COG2274 SunT ABC-type bacterio 100.0 2.5E-53 5.5E-58 419.7 31.2 195 62-257 444-653 (709)
8 KOG0055|consensus 100.0 1.3E-53 2.8E-58 431.0 27.7 202 62-264 959-1176(1228)
9 TIGR00957 MRP_assoc_pro multi 100.0 1E-52 2.2E-57 446.6 32.9 263 1-264 511-813 (1522)
10 TIGR03796 NHPM_micro_ABC1 NHPM 100.0 1.8E-52 3.8E-57 418.2 32.7 195 62-257 444-659 (710)
11 TIGR03797 NHPM_micro_ABC2 NHPM 100.0 3.6E-52 7.8E-57 414.6 33.3 193 62-256 426-631 (686)
12 TIGR00958 3a01208 Conjugate Tr 100.0 2.8E-52 6.1E-57 416.8 32.6 193 62-254 452-658 (711)
13 TIGR03375 type_I_sec_LssB type 100.0 5.7E-52 1.2E-56 413.6 33.5 201 62-264 436-651 (694)
14 TIGR01271 CFTR_protein cystic 100.0 2.5E-52 5.5E-57 442.6 32.4 259 1-264 275-599 (1490)
15 COG1132 MdlB ABC-type multidru 100.0 3.2E-51 7E-56 399.8 31.8 199 62-264 303-515 (567)
16 TIGR01193 bacteriocin_ABC ABC- 100.0 3.8E-51 8.3E-56 408.5 32.6 194 62-257 446-655 (708)
17 PRK11176 lipid transporter ATP 100.0 4.5E-51 9.8E-56 399.5 32.4 196 62-260 316-526 (582)
18 TIGR02857 CydD thiol reductant 100.0 1.4E-50 3.1E-55 392.0 32.4 199 62-263 295-507 (529)
19 TIGR02203 MsbA_lipidA lipid A 100.0 1.5E-50 3.2E-55 394.8 32.5 200 62-264 305-519 (571)
20 COG4988 CydD ABC-type transpor 100.0 1.3E-50 2.8E-55 384.0 30.5 254 5-264 202-506 (559)
21 PRK10790 putative multidrug tr 100.0 3.1E-50 6.7E-55 394.6 33.3 197 62-263 316-525 (592)
22 PRK11160 cysteine/glutathione 100.0 5.5E-50 1.2E-54 391.8 32.9 200 62-264 312-525 (574)
23 PTZ00265 multidrug resistance 100.0 2.7E-50 5.9E-55 425.4 32.6 198 62-260 1134-1404(1466)
24 KOG0055|consensus 100.0 8.8E-51 1.9E-55 410.5 26.6 202 62-264 322-539 (1228)
25 TIGR02204 MsbA_rel ABC transpo 100.0 2.9E-49 6.3E-54 386.2 33.1 202 62-264 309-526 (576)
26 PRK13657 cyclic beta-1,2-gluca 100.0 3.5E-49 7.5E-54 387.0 33.3 174 87-263 333-520 (588)
27 PTZ00243 ABC transporter; Prov 100.0 9.8E-50 2.1E-54 423.7 29.5 264 1-264 440-833 (1560)
28 TIGR01842 type_I_sec_PrtD type 100.0 8.8E-49 1.9E-53 381.0 33.4 195 62-260 292-500 (544)
29 KOG0057|consensus 100.0 4.4E-49 9.5E-54 369.7 26.9 176 85-264 348-537 (591)
30 TIGR01846 type_I_sec_HlyB type 100.0 1.6E-48 3.6E-53 388.8 32.5 199 62-262 429-641 (694)
31 PLN03130 ABC transporter C fam 100.0 1.2E-48 2.7E-53 416.1 32.9 201 62-264 1207-1424(1622)
32 PRK10789 putative multidrug tr 100.0 3.4E-48 7.3E-53 378.8 33.0 199 62-263 288-500 (569)
33 TIGR00957 MRP_assoc_pro multi 100.0 1.4E-48 3E-53 415.1 32.8 201 62-264 1254-1471(1522)
34 PLN03232 ABC transporter C fam 100.0 1.8E-48 3.8E-53 413.7 32.5 201 62-264 1204-1421(1495)
35 PTZ00243 ABC transporter; Prov 100.0 2.9E-47 6.3E-52 404.8 33.1 177 86-264 1306-1496(1560)
36 KOG0056|consensus 100.0 2.1E-48 4.6E-53 360.5 18.6 256 6-264 422-724 (790)
37 TIGR01192 chvA glucan exporter 100.0 1.8E-46 4E-51 367.6 33.1 198 62-262 307-519 (585)
38 COG4618 ArpD ABC-type protease 100.0 3.7E-47 7.9E-52 354.0 26.3 196 62-261 310-519 (580)
39 COG4987 CydC ABC-type transpor 100.0 1.4E-46 3E-51 352.5 25.5 195 62-258 311-519 (573)
40 TIGR01271 CFTR_protein cystic 100.0 2.2E-45 4.9E-50 389.7 33.1 176 86-264 1215-1403(1490)
41 PTZ00265 multidrug resistance 100.0 4.4E-44 9.5E-49 378.4 32.2 199 62-261 356-626 (1466)
42 TIGR01194 cyc_pep_trnsptr cycl 100.0 5.6E-44 1.2E-48 348.2 26.8 166 87-259 336-516 (555)
43 COG1126 GlnQ ABC-type polar am 100.0 8E-45 1.7E-49 308.0 18.0 158 88-260 2-182 (240)
44 COG1116 TauB ABC-type nitrate/ 100.0 7.9E-45 1.7E-49 314.9 18.2 159 88-260 3-177 (248)
45 COG5265 ATM1 ABC-type transpor 100.0 8.3E-44 1.8E-48 325.5 21.2 176 86-264 260-449 (497)
46 cd03250 ABCC_MRP_domain1 Domai 100.0 2.8E-43 6.1E-48 301.7 21.3 173 89-261 1-175 (204)
47 KOG0054|consensus 100.0 2.6E-42 5.7E-47 355.4 29.2 205 58-264 1104-1325(1381)
48 PRK10522 multidrug transporter 100.0 4.8E-42 1E-46 334.0 27.7 184 62-257 297-493 (547)
49 COG3839 MalK ABC-type sugar tr 100.0 8.2E-43 1.8E-47 317.2 17.6 154 88-255 3-175 (338)
50 COG1117 PstB ABC-type phosphat 100.0 1.2E-42 2.6E-47 294.0 16.2 164 87-261 6-196 (253)
51 PRK14257 phosphate ABC transpo 100.0 4.5E-42 9.8E-47 314.9 21.3 192 62-263 55-274 (329)
52 cd03289 ABCC_CFTR2 The CFTR su 100.0 5.7E-42 1.2E-46 307.0 21.1 170 88-260 2-184 (275)
53 COG1121 ZnuC ABC-type Mn/Zn tr 100.0 4.9E-42 1.1E-46 300.5 19.7 160 87-261 3-186 (254)
54 TIGR00954 3a01203 Peroxysomal 100.0 1E-40 2.3E-45 330.8 30.4 165 87-255 450-624 (659)
55 COG1136 SalX ABC-type antimicr 100.0 1.3E-41 2.9E-46 293.7 19.2 158 89-256 2-185 (226)
56 COG1135 AbcC ABC-type metal io 100.0 5E-42 1.1E-46 304.1 16.6 157 88-255 1-183 (339)
57 COG3842 PotA ABC-type spermidi 100.0 6E-42 1.3E-46 313.1 16.0 156 87-256 4-179 (352)
58 cd03244 ABCC_MRP_domain2 Domai 100.0 5.1E-41 1.1E-45 290.8 20.9 170 88-259 2-184 (221)
59 COG2884 FtsE Predicted ATPase 100.0 1.2E-41 2.5E-46 283.3 14.5 154 88-254 1-178 (223)
60 cd03291 ABCC_CFTR1 The CFTR su 100.0 3.1E-40 6.8E-45 296.7 24.3 192 62-260 15-206 (282)
61 cd03252 ABCC_Hemolysin The ABC 100.0 1.2E-40 2.6E-45 291.5 20.3 170 89-260 1-184 (237)
62 cd03245 ABCC_bacteriocin_expor 100.0 2.4E-40 5.2E-45 286.4 21.1 171 88-260 2-186 (220)
63 COG1120 FepC ABC-type cobalami 100.0 6.4E-41 1.4E-45 294.6 17.3 159 88-261 2-185 (258)
64 cd03290 ABCC_SUR1_N The SUR do 100.0 3.6E-40 7.9E-45 285.2 21.2 164 90-255 2-182 (218)
65 cd03254 ABCC_Glucan_exporter_l 100.0 2.7E-40 5.8E-45 287.8 20.2 170 88-260 2-185 (229)
66 COG1125 OpuBA ABC-type proline 100.0 6.1E-41 1.3E-45 290.1 14.4 154 88-255 1-177 (309)
67 cd03288 ABCC_SUR2 The SUR doma 100.0 6.7E-40 1.5E-44 290.7 21.2 172 86-259 17-201 (257)
68 cd03248 ABCC_TAP TAP, the Tran 100.0 7E-40 1.5E-44 284.7 20.5 174 86-260 9-196 (226)
69 cd03251 ABCC_MsbA MsbA is an e 100.0 7.4E-40 1.6E-44 285.8 20.6 170 89-260 1-184 (234)
70 cd03249 ABC_MTABC3_MDL1_MDL2 M 100.0 6E-40 1.3E-44 287.3 19.9 167 89-255 1-181 (238)
71 cd03253 ABCC_ATM1_transporter 100.0 8.2E-40 1.8E-44 285.9 20.5 165 89-255 1-179 (236)
72 COG3638 ABC-type phosphate/pho 100.0 2.3E-40 5E-45 283.9 16.0 156 88-256 3-190 (258)
73 TIGR00960 3a0501s02 Type II (G 100.0 7.4E-40 1.6E-44 282.8 18.4 160 88-260 1-184 (216)
74 COG3840 ThiQ ABC-type thiamine 100.0 3.1E-40 6.8E-45 273.2 14.9 157 89-262 2-177 (231)
75 COG1118 CysA ABC-type sulfate/ 100.0 2.6E-40 5.6E-45 292.8 14.6 154 88-255 2-179 (345)
76 PRK11650 ugpC glycerol-3-phosp 100.0 1.5E-39 3.2E-44 301.1 19.3 161 88-262 3-182 (356)
77 TIGR02314 ABC_MetN D-methionin 100.0 2.2E-39 4.7E-44 298.3 18.5 161 88-260 1-186 (343)
78 PRK11432 fbpC ferric transport 100.0 3.4E-39 7.3E-44 298.1 19.6 161 87-262 5-184 (351)
79 cd03255 ABC_MJ0796_Lo1CDE_FtsE 100.0 2.8E-39 6.2E-44 279.3 17.7 162 89-262 1-188 (218)
80 cd03259 ABC_Carb_Solutes_like 100.0 2.7E-39 5.7E-44 278.7 17.2 157 89-260 1-176 (213)
81 COG1127 Ttg2A ABC-type transpo 100.0 2.2E-39 4.9E-44 278.5 16.3 160 86-260 6-191 (263)
82 cd03226 ABC_cobalt_CbiO_domain 100.0 3.5E-39 7.7E-44 276.5 17.5 156 91-260 2-172 (205)
83 cd03293 ABC_NrtD_SsuB_transpor 100.0 4.2E-39 9.2E-44 278.9 17.7 160 89-260 1-177 (220)
84 cd03261 ABC_Org_Solvent_Resist 100.0 4.7E-39 1E-43 281.3 17.9 157 89-260 1-182 (235)
85 PRK09452 potA putrescine/sperm 100.0 7.9E-39 1.7E-43 297.8 20.1 162 86-262 12-192 (375)
86 PRK11629 lolD lipoprotein tran 100.0 1E-38 2.2E-43 279.0 19.1 161 88-260 5-191 (233)
87 cd03235 ABC_Metallic_Cations A 100.0 6.1E-39 1.3E-43 276.5 17.5 155 91-260 2-178 (213)
88 TIGR03265 PhnT2 putative 2-ami 100.0 7.3E-39 1.6E-43 296.2 18.8 160 88-262 4-182 (353)
89 TIGR02673 FtsE cell division A 100.0 1E-38 2.2E-43 275.1 18.0 159 88-260 1-183 (214)
90 cd03260 ABC_PstB_phosphate_tra 100.0 1.2E-38 2.6E-43 277.2 18.4 159 89-260 1-187 (227)
91 COG1124 DppF ABC-type dipeptid 100.0 1.5E-38 3.3E-43 274.0 18.3 159 88-257 3-185 (252)
92 cd03301 ABC_MalK_N The N-termi 100.0 1.4E-38 3.1E-43 274.0 17.9 157 89-260 1-176 (213)
93 cd03292 ABC_FtsE_transporter F 100.0 1.6E-38 3.5E-43 273.7 18.2 158 89-260 1-182 (214)
94 cd03266 ABC_NatA_sodium_export 100.0 1.5E-38 3.2E-43 274.9 17.9 160 89-260 2-182 (218)
95 TIGR02211 LolD_lipo_ex lipopro 100.0 2.3E-38 5E-43 274.2 19.0 161 89-261 2-188 (221)
96 PRK13650 cbiO cobalt transport 100.0 1.8E-38 4E-43 284.8 19.0 162 88-261 4-187 (279)
97 cd03296 ABC_CysA_sulfate_impor 100.0 2.3E-38 5E-43 277.7 19.1 159 88-261 2-183 (239)
98 PRK11247 ssuB aliphatic sulfon 100.0 4.2E-38 9.1E-43 279.5 20.5 159 87-260 11-179 (257)
99 cd03225 ABC_cobalt_CbiO_domain 100.0 1.8E-38 4E-43 272.9 17.5 158 90-260 1-180 (211)
100 cd03268 ABC_BcrA_bacitracin_re 100.0 2.4E-38 5.1E-43 271.9 18.1 157 89-260 1-172 (208)
101 cd03369 ABCC_NFT1 Domain 2 of 100.0 5.8E-38 1.3E-42 269.4 20.3 150 87-255 5-167 (207)
102 PRK11000 maltose/maltodextrin 100.0 2.1E-38 4.7E-43 294.7 19.0 159 88-261 3-180 (369)
103 cd03223 ABCD_peroxisomal_ALDP 100.0 2.6E-38 5.7E-43 263.3 17.5 130 89-254 1-132 (166)
104 COG1122 CbiO ABC-type cobalt t 100.0 1.5E-38 3.2E-43 278.1 16.6 155 88-255 3-180 (235)
105 TIGR02315 ABC_phnC phosphonate 100.0 3.3E-38 7.1E-43 276.9 18.8 160 88-261 1-192 (243)
106 TIGR03258 PhnT 2-aminoethylpho 100.0 1.9E-38 4.1E-43 294.1 18.0 160 87-261 4-184 (362)
107 PRK10851 sulfate/thiosulfate t 100.0 3.4E-38 7.4E-43 291.7 19.6 160 88-262 2-184 (353)
108 PRK13647 cbiO cobalt transport 100.0 3.5E-38 7.7E-43 282.3 18.8 159 88-260 4-184 (274)
109 PRK11153 metN DL-methionine tr 100.0 3E-38 6.4E-43 291.3 18.8 161 88-260 1-186 (343)
110 PRK13637 cbiO cobalt transport 100.0 3.5E-38 7.7E-43 284.1 18.9 164 88-261 2-191 (287)
111 cd03265 ABC_DrrA DrrA is the A 100.0 2.9E-38 6.2E-43 273.7 17.5 158 89-261 1-178 (220)
112 cd03219 ABC_Mj1267_LivG_branch 100.0 2.3E-38 5E-43 276.7 17.0 157 89-255 1-185 (236)
113 PRK10584 putative ABC transpor 100.0 6.3E-38 1.4E-42 272.8 19.6 162 87-260 5-192 (228)
114 PRK13631 cbiO cobalt transport 100.0 4.6E-38 1E-42 287.4 19.6 165 85-260 18-222 (320)
115 cd03263 ABC_subfamily_A The AB 100.0 3.9E-38 8.5E-43 272.6 18.0 159 89-260 1-179 (220)
116 cd03269 ABC_putative_ATPase Th 100.0 3.6E-38 7.7E-43 271.1 17.4 157 89-260 1-174 (210)
117 cd03262 ABC_HisP_GlnQ_permease 100.0 4.6E-38 9.9E-43 270.7 18.0 157 89-260 1-181 (213)
118 cd03256 ABC_PhnC_transporter A 100.0 4.4E-38 9.5E-43 275.6 18.2 158 89-260 1-190 (241)
119 PRK11607 potG putrescine trans 100.0 5.5E-38 1.2E-42 292.5 19.7 161 86-261 17-196 (377)
120 PRK14269 phosphate ABC transpo 100.0 6E-38 1.3E-42 276.3 18.7 162 88-260 2-188 (246)
121 cd03264 ABC_drug_resistance_li 100.0 4.8E-38 1E-42 270.5 17.6 156 89-260 1-176 (211)
122 PRK13634 cbiO cobalt transport 100.0 5.8E-38 1.3E-42 283.1 18.8 161 89-260 3-191 (290)
123 cd03224 ABC_TM1139_LivF_branch 100.0 5.8E-38 1.3E-42 271.7 17.9 158 89-260 1-178 (222)
124 cd03258 ABC_MetN_methionine_tr 100.0 5.9E-38 1.3E-42 273.8 17.9 160 89-260 2-186 (233)
125 PRK10247 putative ABC transpor 100.0 1.3E-37 2.9E-42 270.8 19.8 161 87-261 6-184 (225)
126 PRK10908 cell division protein 100.0 1E-37 2.2E-42 270.6 18.9 158 89-260 2-183 (222)
127 PRK14250 phosphate ABC transpo 100.0 1.2E-37 2.6E-42 273.7 19.6 159 88-260 3-177 (241)
128 cd03231 ABC_CcmA_heme_exporter 100.0 1.8E-37 3.9E-42 265.6 19.9 157 89-260 1-171 (201)
129 cd03298 ABC_ThiQ_thiamine_tran 100.0 1.2E-37 2.7E-42 267.9 19.0 156 89-261 1-175 (211)
130 PRK13635 cbiO cobalt transport 100.0 1.2E-37 2.6E-42 279.6 19.6 162 87-261 4-187 (279)
131 cd03218 ABC_YhbG The ABC trans 100.0 7E-38 1.5E-42 273.0 17.5 157 89-260 1-179 (232)
132 PRK11248 tauB taurine transpor 100.0 1.1E-37 2.3E-42 276.5 19.0 158 88-260 1-174 (255)
133 TIGR00972 3a0107s01c2 phosphat 100.0 1E-37 2.2E-42 274.8 18.7 162 88-260 1-190 (247)
134 PRK13643 cbiO cobalt transport 100.0 1.1E-37 2.4E-42 281.0 19.2 162 88-260 1-190 (288)
135 PRK14242 phosphate transporter 100.0 1.1E-37 2.4E-42 275.4 18.5 163 87-260 5-195 (253)
136 PRK13537 nodulation ABC transp 100.0 1.3E-37 2.7E-42 283.0 19.3 159 87-260 6-184 (306)
137 PRK14273 phosphate ABC transpo 100.0 1.3E-37 2.9E-42 275.2 18.9 163 87-260 6-196 (254)
138 PRK13538 cytochrome c biogenes 100.0 1.5E-37 3.2E-42 266.5 18.5 158 88-260 1-175 (204)
139 PRK13646 cbiO cobalt transport 100.0 1.1E-37 2.3E-42 280.8 18.5 162 88-260 2-191 (286)
140 PRK13644 cbiO cobalt transport 100.0 1.8E-37 3.8E-42 277.8 19.3 159 88-260 1-182 (274)
141 PRK10744 pstB phosphate transp 100.0 2E-37 4.3E-42 275.2 19.2 164 86-260 11-202 (260)
142 TIGR01189 ccmA heme ABC export 100.0 2.1E-37 4.5E-42 264.3 18.6 157 89-260 1-173 (198)
143 PRK13540 cytochrome c biogenes 100.0 2.8E-37 6E-42 264.1 19.1 157 89-260 2-173 (200)
144 PRK13632 cbiO cobalt transport 100.0 2.1E-37 4.5E-42 276.8 19.1 161 87-260 6-188 (271)
145 TIGR03864 PQQ_ABC_ATP ABC tran 100.0 1.8E-37 3.9E-42 271.6 18.3 158 89-261 2-179 (236)
146 TIGR01288 nodI ATP-binding ABC 100.0 2.1E-37 4.5E-42 281.1 19.2 159 87-260 3-181 (303)
147 cd03295 ABC_OpuCA_Osmoprotecti 100.0 1.5E-37 3.2E-42 273.1 17.5 160 89-260 1-181 (242)
148 TIGR03608 L_ocin_972_ABC putat 100.0 1.5E-37 3.3E-42 266.1 16.9 156 91-261 1-181 (206)
149 COG1131 CcmA ABC-type multidru 100.0 1.5E-37 3.2E-42 280.8 17.7 161 88-262 4-184 (293)
150 COG0410 LivF ABC-type branched 100.0 8.6E-38 1.9E-42 267.6 15.1 164 88-260 3-182 (237)
151 PRK14259 phosphate ABC transpo 100.0 3E-37 6.6E-42 275.5 19.3 164 86-260 11-200 (269)
152 cd03247 ABCC_cytochrome_bd The 100.0 2.3E-37 4.9E-42 260.1 17.3 129 89-256 1-141 (178)
153 PRK11300 livG leucine/isoleuci 100.0 3E-37 6.5E-42 272.8 18.9 165 87-260 4-199 (255)
154 cd03294 ABC_Pro_Gly_Bertaine T 100.0 9.5E-38 2.1E-42 278.8 15.9 156 90-260 26-206 (269)
155 PRK13651 cobalt transporter AT 100.0 2.8E-37 6E-42 280.6 18.9 157 88-254 2-206 (305)
156 PRK11231 fecE iron-dicitrate t 100.0 3.8E-37 8.2E-42 272.6 19.3 158 88-260 2-184 (255)
157 TIGR01186 proV glycine betaine 100.0 1.1E-37 2.3E-42 288.9 16.4 143 104-257 6-173 (363)
158 PRK10575 iron-hydroxamate tran 100.0 4.4E-37 9.5E-42 273.8 19.7 159 87-260 10-193 (265)
159 TIGR03411 urea_trans_UrtD urea 100.0 3.1E-37 6.7E-42 270.8 18.4 158 88-260 2-189 (242)
160 PRK11831 putative ABC transpor 100.0 3E-37 6.5E-42 275.5 18.5 159 87-260 6-189 (269)
161 PRK11124 artP arginine transpo 100.0 4.2E-37 9E-42 270.1 19.0 158 88-260 2-187 (242)
162 PRK13636 cbiO cobalt transport 100.0 4E-37 8.8E-42 276.7 19.3 161 87-261 4-188 (283)
163 PRK09493 glnQ glutamine ABC tr 100.0 3.2E-37 6.9E-42 270.5 18.2 158 89-261 2-183 (240)
164 PRK09536 btuD corrinoid ABC tr 100.0 3.4E-37 7.4E-42 288.8 19.3 159 88-261 3-186 (402)
165 PRK14235 phosphate transporter 100.0 4.8E-37 1E-41 273.9 19.3 164 86-260 17-209 (267)
166 PRK13641 cbiO cobalt transport 100.0 3.8E-37 8.2E-42 277.4 18.7 162 88-260 2-191 (287)
167 PRK14248 phosphate ABC transpo 100.0 4.5E-37 9.7E-42 274.1 19.0 164 86-260 19-210 (268)
168 cd03246 ABCC_Protease_Secretio 100.0 3.5E-37 7.5E-42 257.9 17.0 129 89-260 1-142 (173)
169 cd03257 ABC_NikE_OppD_transpor 100.0 2.7E-37 5.9E-42 268.3 16.8 162 89-261 2-192 (228)
170 PRK10253 iron-enterobactin tra 100.0 6.1E-37 1.3E-41 272.9 19.4 160 86-260 5-189 (265)
171 TIGR03410 urea_trans_UrtE urea 100.0 4.1E-37 8.8E-42 268.0 17.7 158 89-260 1-177 (230)
172 PRK13649 cbiO cobalt transport 100.0 4.4E-37 9.6E-42 275.7 18.4 162 88-260 2-191 (280)
173 PRK14237 phosphate transporter 100.0 5.7E-37 1.2E-41 273.4 19.0 164 86-260 18-209 (267)
174 cd03233 ABC_PDR_domain1 The pl 100.0 3.9E-37 8.4E-42 263.9 17.1 147 88-262 3-166 (202)
175 PRK13640 cbiO cobalt transport 100.0 5.6E-37 1.2E-41 275.6 18.9 162 87-261 4-190 (282)
176 TIGR01277 thiQ thiamine ABC tr 100.0 6.9E-37 1.5E-41 263.9 18.7 155 89-260 1-174 (213)
177 PRK13633 cobalt transporter AT 100.0 6.2E-37 1.3E-41 275.0 19.1 162 87-260 3-190 (280)
178 PRK09544 znuC high-affinity zi 100.0 8.4E-37 1.8E-41 270.3 19.6 158 88-260 4-166 (251)
179 PRK11264 putative amino-acid A 100.0 4.3E-37 9.3E-42 271.1 17.6 158 88-260 3-190 (250)
180 PRK13536 nodulation factor exp 100.0 4.2E-37 9.2E-42 283.1 18.3 159 87-260 40-218 (340)
181 PRK14249 phosphate ABC transpo 100.0 8.3E-37 1.8E-41 269.7 19.3 163 87-260 3-193 (251)
182 PRK14270 phosphate ABC transpo 100.0 8.9E-37 1.9E-41 269.5 19.2 164 87-261 3-194 (251)
183 TIGR02982 heterocyst_DevA ABC 100.0 5.5E-37 1.2E-41 265.8 17.5 162 89-262 2-189 (220)
184 PRK10619 histidine/lysine/argi 100.0 7.1E-37 1.5E-41 271.1 18.6 161 86-260 3-198 (257)
185 PRK14247 phosphate ABC transpo 100.0 7E-37 1.5E-41 269.9 18.3 159 88-256 3-189 (250)
186 PRK13543 cytochrome c biogenes 100.0 1.7E-36 3.6E-41 262.0 20.2 161 87-262 10-185 (214)
187 PRK10895 lipopolysaccharide AB 100.0 8.5E-37 1.8E-41 267.9 18.6 158 88-260 3-183 (241)
188 TIGR03005 ectoine_ehuA ectoine 100.0 8.1E-37 1.8E-41 269.9 18.5 158 89-261 1-193 (252)
189 PRK14240 phosphate transporter 100.0 8.6E-37 1.9E-41 269.3 18.7 162 88-260 3-192 (250)
190 PRK13645 cbiO cobalt transport 100.0 7.6E-37 1.7E-41 275.5 18.6 164 87-261 5-197 (289)
191 PRK13548 hmuV hemin importer A 100.0 1.4E-36 3E-41 269.7 19.9 159 88-261 2-187 (258)
192 PRK13638 cbiO cobalt transport 100.0 7.9E-37 1.7E-41 273.0 18.5 158 88-260 1-182 (271)
193 PRK13642 cbiO cobalt transport 100.0 1.1E-36 2.3E-41 273.1 19.3 162 88-261 4-187 (277)
194 PRK13652 cbiO cobalt transport 100.0 1.3E-36 2.8E-41 272.6 19.7 159 88-260 3-183 (277)
195 PRK14274 phosphate ABC transpo 100.0 1.2E-36 2.6E-41 270.0 19.3 163 87-260 11-201 (259)
196 TIGR01166 cbiO cobalt transpor 100.0 4.9E-37 1.1E-41 260.3 15.9 145 104-260 5-173 (190)
197 TIGR03522 GldA_ABC_ATP gliding 100.0 6.7E-37 1.4E-41 277.6 17.8 158 88-260 2-179 (301)
198 PRK14239 phosphate transporter 100.0 1.1E-36 2.3E-41 268.8 18.6 162 88-260 5-194 (252)
199 PRK10771 thiQ thiamine transpo 100.0 1.7E-36 3.6E-41 264.8 19.6 155 89-260 2-175 (232)
200 PRK14268 phosphate ABC transpo 100.0 9.1E-37 2E-41 270.7 18.2 163 87-260 11-200 (258)
201 PRK14245 phosphate ABC transpo 100.0 8.9E-37 1.9E-41 269.3 18.0 162 88-260 3-192 (250)
202 PRK13539 cytochrome c biogenes 100.0 1.5E-36 3.2E-41 261.0 18.9 158 88-260 2-173 (207)
203 PRK10070 glycine betaine trans 100.0 6.5E-37 1.4E-41 286.8 17.9 161 88-260 4-210 (400)
204 PRK13639 cbiO cobalt transport 100.0 1.1E-36 2.3E-41 272.9 18.3 159 88-260 1-183 (275)
205 PRK13648 cbiO cobalt transport 100.0 1.3E-36 2.9E-41 271.3 18.8 162 87-261 6-189 (269)
206 PRK14243 phosphate transporter 100.0 1.5E-36 3.1E-41 270.4 19.0 163 87-260 9-197 (264)
207 PRK14251 phosphate ABC transpo 100.0 1E-36 2.2E-41 269.0 17.8 162 88-260 4-193 (251)
208 PRK14254 phosphate ABC transpo 100.0 1.1E-36 2.4E-41 274.2 18.3 164 86-260 37-226 (285)
209 PRK11614 livF leucine/isoleuci 100.0 1.6E-36 3.5E-41 265.6 18.6 158 88-260 5-183 (237)
210 TIGR03740 galliderm_ABC gallid 100.0 1.3E-36 2.7E-41 263.9 17.7 157 89-260 1-170 (223)
211 COG1137 YhbG ABC-type (unclass 100.0 2.3E-38 4.9E-43 265.6 6.3 165 88-258 4-183 (243)
212 PRK14261 phosphate ABC transpo 100.0 2.4E-36 5.3E-41 267.0 19.4 163 87-260 5-195 (253)
213 PRK14236 phosphate transporter 100.0 2.2E-36 4.7E-41 270.3 19.3 164 86-260 23-214 (272)
214 cd03230 ABC_DR_subfamily_A Thi 100.0 1.7E-36 3.6E-41 253.8 17.3 128 89-260 1-141 (173)
215 TIGR01978 sufC FeS assembly AT 100.0 1.5E-36 3.2E-41 266.3 17.4 158 89-260 1-190 (243)
216 TIGR02324 CP_lyasePhnL phospho 100.0 2.4E-36 5.2E-41 262.2 18.4 161 89-260 2-195 (224)
217 PRK14253 phosphate ABC transpo 100.0 2.1E-36 4.5E-41 266.7 18.3 162 88-260 3-191 (249)
218 PRK15079 oligopeptide ABC tran 100.0 2.7E-36 5.9E-41 276.9 19.7 164 87-261 7-208 (331)
219 cd03300 ABC_PotA_N PotA is an 100.0 1.6E-36 3.6E-41 264.9 17.4 157 89-260 1-176 (232)
220 PRK14267 phosphate ABC transpo 100.0 2E-36 4.4E-41 267.4 18.0 162 88-260 4-195 (253)
221 PRK14260 phosphate ABC transpo 100.0 2.4E-36 5.1E-41 268.1 18.4 163 87-260 6-196 (259)
222 PRK14256 phosphate ABC transpo 100.0 4.2E-36 9E-41 265.3 19.8 163 87-260 3-194 (252)
223 PRK15056 manganese/iron transp 100.0 2.7E-36 5.9E-41 269.7 18.9 160 87-260 5-188 (272)
224 PRK09984 phosphonate/organopho 100.0 2.9E-36 6.4E-41 267.9 18.9 159 88-261 4-199 (262)
225 PRK14262 phosphate ABC transpo 100.0 2.1E-36 4.5E-41 266.9 17.8 162 88-260 3-192 (250)
226 cd03234 ABCG_White The White s 100.0 1.1E-36 2.3E-41 265.0 15.6 165 89-260 4-189 (226)
227 PRK14238 phosphate transporter 100.0 3.7E-36 7.9E-41 268.8 19.2 164 87-261 23-214 (271)
228 PRK14264 phosphate ABC transpo 100.0 4.4E-36 9.4E-41 272.7 19.9 164 86-260 43-246 (305)
229 TIGR03873 F420-0_ABC_ATP propo 100.0 3.4E-36 7.5E-41 266.6 18.7 157 89-260 2-183 (256)
230 TIGR00968 3a0106s01 sulfate AB 100.0 3.2E-36 6.9E-41 264.0 18.0 157 89-260 1-176 (237)
231 PRK14265 phosphate ABC transpo 100.0 4.1E-36 9E-41 269.0 19.1 164 86-260 18-207 (274)
232 cd03228 ABCC_MRP_Like The MRP 100.0 2.9E-36 6.2E-41 251.9 16.8 129 89-260 1-142 (171)
233 PRK11144 modC molybdate transp 100.0 3.3E-36 7.3E-41 278.5 18.9 156 89-262 2-176 (352)
234 PRK14244 phosphate ABC transpo 100.0 2.6E-36 5.7E-41 266.5 17.4 161 89-260 6-195 (251)
235 PRK13541 cytochrome c biogenes 100.0 4.7E-36 1E-40 255.5 18.1 151 89-254 2-164 (195)
236 COG4525 TauB ABC-type taurine 100.0 1.3E-36 2.8E-41 254.3 13.9 158 88-257 3-176 (259)
237 PRK14266 phosphate ABC transpo 100.0 4.4E-36 9.6E-41 264.7 18.0 162 88-260 3-192 (250)
238 TIGR02769 nickel_nikE nickel i 100.0 5.6E-36 1.2E-40 266.7 18.8 163 88-261 2-197 (265)
239 COG4619 ABC-type uncharacteriz 100.0 4.6E-37 1E-41 251.5 10.7 150 103-263 15-182 (223)
240 TIGR03415 ABC_choXWV_ATP choli 100.0 3E-36 6.4E-41 280.7 17.5 143 104-257 37-208 (382)
241 PRK14275 phosphate ABC transpo 100.0 4.4E-36 9.4E-41 270.4 18.0 164 86-260 37-228 (286)
242 PRK15112 antimicrobial peptide 100.0 6.1E-36 1.3E-40 266.8 18.7 163 87-260 3-195 (267)
243 TIGR01188 drrA daunorubicin re 100.0 2.5E-36 5.4E-41 273.9 16.3 145 104-260 6-170 (302)
244 PRK14271 phosphate ABC transpo 100.0 4.3E-36 9.3E-41 269.2 17.6 163 87-260 20-209 (276)
245 PRK14263 phosphate ABC transpo 100.0 7.7E-36 1.7E-40 265.4 19.1 159 88-256 8-192 (261)
246 PRK14255 phosphate ABC transpo 100.0 5.9E-36 1.3E-40 264.3 18.2 163 87-260 4-194 (252)
247 cd03229 ABC_Class3 This class 100.0 4.5E-36 9.7E-41 252.3 16.6 130 89-260 1-146 (178)
248 PRK14252 phosphate ABC transpo 100.0 7.3E-36 1.6E-40 265.9 18.9 164 86-260 14-207 (265)
249 cd03297 ABC_ModC_molybdenum_tr 100.0 6E-36 1.3E-40 258.1 17.5 153 89-260 2-177 (214)
250 PRK14241 phosphate transporter 100.0 8.6E-36 1.9E-40 264.3 18.3 162 88-260 4-194 (258)
251 PRK11308 dppF dipeptide transp 100.0 1.4E-35 3E-40 271.8 20.1 163 87-260 4-200 (327)
252 cd03299 ABC_ModC_like Archeal 100.0 1.1E-35 2.3E-40 260.4 18.1 156 89-260 1-175 (235)
253 PRK14258 phosphate ABC transpo 100.0 1.2E-35 2.7E-40 263.9 18.7 159 87-255 6-192 (261)
254 cd03213 ABCG_EPDR ABCG transpo 100.0 7.7E-36 1.7E-40 254.3 16.4 139 88-260 3-157 (194)
255 PRK13547 hmuV hemin importer A 100.0 1.6E-35 3.5E-40 265.0 18.8 160 88-262 1-202 (272)
256 PRK14272 phosphate ABC transpo 100.0 1.8E-35 4E-40 261.0 18.2 162 88-260 4-194 (252)
257 PRK11701 phnK phosphonate C-P 100.0 2.6E-35 5.6E-40 261.2 19.0 165 87-261 5-198 (258)
258 cd03215 ABC_Carb_Monos_II This 100.0 1.4E-35 3.1E-40 250.1 16.2 129 88-260 4-150 (182)
259 PRK10418 nikD nickel transport 100.0 3.2E-35 7E-40 260.2 19.0 161 88-261 4-187 (254)
260 PRK14246 phosphate ABC transpo 100.0 1.7E-35 3.6E-40 262.7 16.8 163 87-260 9-199 (257)
261 cd03232 ABC_PDR_domain2 The pl 100.0 1.9E-35 4.2E-40 251.4 16.3 139 88-260 3-154 (192)
262 PRK15439 autoinducer 2 ABC tra 100.0 2.8E-35 6.1E-40 284.4 19.6 159 87-260 10-186 (510)
263 PRK11022 dppD dipeptide transp 100.0 2.5E-35 5.4E-40 270.1 18.0 160 88-255 3-195 (326)
264 TIGR02142 modC_ABC molybdenum 100.0 2.8E-35 6.1E-40 272.5 18.2 152 93-261 4-178 (354)
265 PRK10762 D-ribose transporter 100.0 2.3E-35 5.1E-40 284.4 18.1 158 88-260 4-187 (501)
266 COG4555 NatA ABC-type Na+ tran 100.0 7.4E-36 1.6E-40 250.7 12.6 158 88-259 1-178 (245)
267 PRK09700 D-allose transporter 100.0 2.9E-35 6.2E-40 284.3 18.1 159 87-260 4-191 (510)
268 PRK13549 xylose transporter AT 100.0 3.5E-35 7.6E-40 283.4 18.4 159 87-260 4-189 (506)
269 PRK15093 antimicrobial peptide 100.0 6.4E-35 1.4E-39 267.8 19.2 164 88-260 3-204 (330)
270 TIGR02323 CP_lyasePhnK phospho 100.0 7.4E-35 1.6E-39 257.4 18.8 163 88-260 3-194 (253)
271 CHL00131 ycf16 sulfate ABC tra 100.0 1E-34 2.2E-39 256.2 19.2 160 87-260 6-197 (252)
272 PRK11288 araG L-arabinose tran 100.0 5.1E-35 1.1E-39 282.0 18.7 158 88-260 4-186 (501)
273 cd03267 ABC_NatA_like Similar 100.0 4.6E-35 1E-39 256.6 15.9 145 104-260 34-199 (236)
274 TIGR01184 ntrCD nitrate transp 100.0 4.1E-35 9E-40 256.0 15.4 143 107-261 1-161 (230)
275 PRK10419 nikE nickel transport 100.0 1.1E-34 2.4E-39 258.8 18.4 163 88-261 3-198 (268)
276 PRK09473 oppD oligopeptide tra 100.0 9.1E-35 2E-39 266.7 17.3 165 87-260 11-207 (330)
277 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 100.0 8.4E-35 1.8E-39 253.2 15.9 153 89-255 23-184 (224)
278 COG4181 Predicted ABC-type tra 100.0 6.3E-35 1.4E-39 239.7 14.1 159 88-257 6-190 (228)
279 cd03217 ABC_FeS_Assembly ABC-t 100.0 1.7E-34 3.7E-39 247.0 16.4 133 89-260 1-150 (200)
280 PRK10261 glutathione transport 100.0 2E-34 4.3E-39 284.4 19.2 166 87-261 11-215 (623)
281 PRK15064 ABC transporter ATP-b 100.0 2.2E-34 4.7E-39 279.4 19.0 163 88-255 1-197 (530)
282 PRK13546 teichoic acids export 100.0 3.1E-34 6.7E-39 255.7 18.5 158 88-256 4-186 (264)
283 PRK10982 galactose/methyl gala 100.0 1.2E-34 2.7E-39 278.6 16.4 159 91-260 1-180 (491)
284 TIGR02633 xylG D-xylose ABC tr 100.0 2.2E-34 4.7E-39 277.5 18.1 158 89-260 2-187 (500)
285 PRK11819 putative ABC transpor 100.0 1.9E-34 4.1E-39 281.3 17.7 163 87-254 5-204 (556)
286 cd03237 ABC_RNaseL_inhibitor_d 100.0 2.1E-34 4.6E-39 254.2 16.2 152 96-261 1-162 (246)
287 PRK10261 glutathione transport 100.0 4.1E-34 8.8E-39 282.3 19.9 162 87-260 312-509 (623)
288 TIGR03719 ABC_ABC_ChvD ATP-bin 100.0 3.6E-34 7.8E-39 279.1 19.3 163 88-255 4-203 (552)
289 TIGR03269 met_CoM_red_A2 methy 100.0 3.7E-34 7.9E-39 277.2 18.4 167 87-260 278-473 (520)
290 PRK10938 putative molybdenum t 100.0 2.7E-34 5.8E-39 276.2 17.2 157 88-260 3-181 (490)
291 PRK09580 sufC cysteine desulfu 100.0 7.4E-34 1.6E-38 250.0 18.0 159 88-260 1-191 (248)
292 TIGR03269 met_CoM_red_A2 methy 100.0 4.3E-34 9.4E-39 276.6 17.7 159 89-262 1-216 (520)
293 cd03216 ABC_Carb_Monos_I This 100.0 6.2E-34 1.3E-38 236.3 16.0 127 89-260 1-128 (163)
294 COG0411 LivG ABC-type branched 100.0 1.1E-34 2.4E-39 250.2 11.8 165 88-260 4-195 (250)
295 PRK15064 ABC transporter ATP-b 100.0 1.3E-33 2.8E-38 273.9 19.9 156 87-255 318-480 (530)
296 cd03214 ABC_Iron-Siderophores_ 100.0 3.5E-34 7.6E-39 241.2 13.9 143 90-260 1-143 (180)
297 PRK15134 microcin C ABC transp 100.0 1.4E-33 3E-38 273.6 18.8 164 88-260 5-202 (529)
298 PRK13549 xylose transporter AT 100.0 5.5E-34 1.2E-38 275.1 15.5 163 87-260 258-451 (506)
299 PRK13545 tagH teichoic acids e 100.0 2.3E-33 5E-38 267.9 19.5 162 87-260 20-189 (549)
300 PF00005 ABC_tran: ABC transpo 100.0 5.7E-34 1.2E-38 228.4 12.9 123 107-242 1-137 (137)
301 TIGR02770 nickel_nikD nickel i 100.0 9.7E-34 2.1E-38 247.1 15.1 146 106-260 1-171 (230)
302 PRK09700 D-allose transporter 100.0 6.2E-34 1.3E-38 275.0 15.3 161 87-260 264-455 (510)
303 cd03221 ABCF_EF-3 ABCF_EF-3 E 100.0 2.6E-33 5.7E-38 228.1 15.7 109 89-254 1-111 (144)
304 COG1123 ATPase components of v 100.0 2.2E-33 4.7E-38 267.2 17.5 160 86-255 278-471 (539)
305 PRK11819 putative ABC transpor 100.0 3.5E-33 7.5E-38 272.4 19.3 155 87-254 323-486 (556)
306 COG4175 ProV ABC-type proline/ 100.0 7.8E-34 1.7E-38 252.3 13.3 159 88-257 4-208 (386)
307 TIGR03719 ABC_ABC_ChvD ATP-bin 100.0 3.9E-33 8.4E-38 271.9 19.4 155 87-254 321-484 (552)
308 PRK15134 microcin C ABC transp 100.0 2.5E-33 5.4E-38 271.9 17.9 162 87-260 274-471 (529)
309 COG4559 ABC-type hemin transpo 100.0 1.5E-33 3.3E-38 238.5 14.2 153 88-254 1-182 (259)
310 PRK03695 vitamin B12-transport 100.0 2.9E-33 6.2E-38 247.1 16.6 151 90-260 2-179 (248)
311 TIGR02633 xylG D-xylose ABC tr 100.0 1.5E-33 3.2E-38 271.7 15.4 163 87-260 256-449 (500)
312 COG4598 HisP ABC-type histidin 100.0 9.3E-34 2E-38 234.6 11.8 159 87-260 5-198 (256)
313 COG1129 MglA ABC-type sugar tr 100.0 8.4E-33 1.8E-37 261.5 19.7 163 87-260 7-191 (500)
314 COG4136 ABC-type uncharacteriz 100.0 2.4E-33 5.1E-38 226.1 13.4 159 88-260 2-181 (213)
315 PLN03211 ABC transporter G-25; 100.0 3E-33 6.5E-38 277.1 16.0 150 104-261 81-253 (659)
316 PRK13409 putative ATPase RIL; 100.0 7.9E-33 1.7E-37 271.0 18.7 159 87-261 339-500 (590)
317 TIGR00955 3a01204 The Eye Pigm 100.0 1.7E-33 3.6E-38 277.6 13.9 150 103-257 37-210 (617)
318 TIGR03771 anch_rpt_ABC anchore 100.0 5.8E-33 1.3E-37 241.4 15.3 137 112-260 1-159 (223)
319 PRK10938 putative molybdenum t 100.0 6.1E-33 1.3E-37 266.8 16.1 160 87-260 259-447 (490)
320 COG4148 ModC ABC-type molybdat 100.0 1.9E-33 4.1E-38 246.3 10.9 135 109-254 16-169 (352)
321 PRK11147 ABC transporter ATPas 100.0 3.2E-32 6.9E-37 269.4 19.8 159 86-258 317-484 (635)
322 TIGR01257 rim_protein retinal- 100.0 2.6E-32 5.7E-37 291.9 19.8 158 87-256 927-1104(2272)
323 COG1123 ATPase components of v 100.0 2.9E-32 6.4E-37 259.5 17.9 165 88-262 5-202 (539)
324 PRK11288 araG L-arabinose tran 100.0 1.7E-32 3.7E-37 264.5 16.2 156 88-261 257-443 (501)
325 PRK10636 putative ABC transpor 100.0 4.4E-32 9.5E-37 268.4 19.5 162 88-254 1-190 (638)
326 PRK10762 D-ribose transporter 100.0 1.4E-32 3.1E-37 265.0 15.2 154 88-260 257-441 (501)
327 TIGR01257 rim_protein retinal- 100.0 5.1E-32 1.1E-36 289.7 20.8 162 86-260 1935-2116(2272)
328 PRK10535 macrolide transporter 100.0 6.5E-32 1.4E-36 267.6 19.9 162 88-261 4-191 (648)
329 PRK15177 Vi polysaccharide exp 100.0 3.6E-32 7.8E-37 235.1 15.8 140 106-256 2-147 (213)
330 PRK10636 putative ABC transpor 100.0 7.4E-32 1.6E-36 266.7 19.1 156 86-254 310-471 (638)
331 TIGR00956 3a01205 Pleiotropic 100.0 5.6E-32 1.2E-36 286.0 19.4 165 88-260 759-948 (1394)
332 cd03222 ABC_RNaseL_inhibitor T 100.0 4.1E-32 8.9E-37 228.4 14.4 113 92-260 4-117 (177)
333 COG4608 AppF ABC-type oligopep 100.0 3E-32 6.5E-37 239.2 13.9 139 88-254 4-150 (268)
334 cd03236 ABC_RNaseL_inhibitor_d 100.0 3.8E-32 8.3E-37 241.1 14.4 154 92-260 4-185 (255)
335 COG4161 ArtP ABC-type arginine 100.0 2.1E-32 4.4E-37 223.3 11.5 157 88-259 2-186 (242)
336 COG0444 DppD ABC-type dipeptid 100.0 5.1E-32 1.1E-36 242.4 15.2 162 89-262 2-201 (316)
337 PLN03073 ABC transporter F fam 100.0 1.6E-31 3.5E-36 266.5 19.7 156 87-255 507-669 (718)
338 COG0488 Uup ATPase components 100.0 1.5E-31 3.2E-36 257.5 18.8 160 88-253 3-193 (530)
339 COG3845 ABC-type uncharacteriz 100.0 6.5E-32 1.4E-36 251.8 15.5 154 87-254 3-181 (501)
340 COG4604 CeuD ABC-type enteroch 100.0 1.5E-32 3.3E-37 230.1 8.0 153 88-254 1-176 (252)
341 PRK15439 autoinducer 2 ABC tra 100.0 1E-31 2.2E-36 259.7 14.4 155 87-260 267-449 (510)
342 PRK10982 galactose/methyl gala 100.0 2.1E-31 4.5E-36 256.3 14.9 162 87-260 249-437 (491)
343 PRK11147 ABC transporter ATPas 100.0 6.3E-31 1.4E-35 260.1 18.4 160 88-254 3-197 (635)
344 COG4178 ABC-type uncharacteriz 100.0 3.3E-30 7.2E-35 248.3 22.1 165 86-257 390-559 (604)
345 COG4172 ABC-type uncharacteriz 100.0 1.3E-30 2.8E-35 238.1 17.6 157 86-254 274-467 (534)
346 TIGR01187 potA spermidine/putr 100.0 3.8E-31 8.1E-36 242.4 13.3 128 122-261 1-147 (325)
347 COG1119 ModF ABC-type molybden 100.0 6.1E-31 1.3E-35 227.2 12.6 157 86-256 29-214 (257)
348 COG4152 ABC-type uncharacteriz 100.0 3.7E-31 7.9E-36 228.1 11.1 160 88-257 2-174 (300)
349 cd00267 ABC_ATPase ABC (ATP-bi 100.0 3.9E-30 8.4E-35 211.7 15.4 112 91-260 2-126 (157)
350 PRK13409 putative ATPase RIL; 100.0 8.1E-31 1.8E-35 256.9 13.2 151 93-260 78-258 (590)
351 PLN03140 ABC transporter G fam 100.0 3E-30 6.6E-35 272.8 18.5 165 88-260 867-1065(1470)
352 COG1101 PhnK ABC-type uncharac 100.0 1.2E-30 2.6E-35 221.3 11.8 166 90-255 3-190 (263)
353 cd03238 ABC_UvrA The excision 100.0 1.7E-29 3.7E-34 212.3 13.9 118 104-260 8-135 (176)
354 KOG0060|consensus 100.0 2.1E-28 4.6E-33 231.4 22.8 171 85-257 430-614 (659)
355 COG4133 CcmA ABC-type transpor 100.0 6.1E-30 1.3E-34 212.9 11.0 154 89-257 3-173 (209)
356 COG4167 SapF ABC-type antimicr 100.0 1.1E-29 2.3E-34 211.0 10.5 158 88-257 4-193 (267)
357 KOG0061|consensus 100.0 1.2E-28 2.7E-33 242.2 17.6 166 87-260 24-216 (613)
358 COG0488 Uup ATPase components 100.0 1.9E-28 4.2E-33 236.0 17.2 159 86-257 319-482 (530)
359 TIGR00956 3a01205 Pleiotropic 100.0 7.7E-29 1.7E-33 262.2 15.7 150 104-261 74-256 (1394)
360 PLN03140 ABC transporter G fam 100.0 1.7E-28 3.7E-33 259.6 12.5 156 104-260 178-382 (1470)
361 COG4778 PhnL ABC-type phosphon 100.0 1.3E-28 2.8E-33 202.3 8.3 157 88-254 4-193 (235)
362 COG4674 Uncharacterized ABC-ty 100.0 2.9E-28 6.2E-33 204.1 10.1 149 87-249 4-184 (249)
363 PLN03073 ABC transporter F fam 100.0 2.6E-27 5.6E-32 236.4 18.0 157 87-254 176-385 (718)
364 COG1134 TagH ABC-type polysacc 100.0 3.2E-27 7E-32 204.2 15.9 137 104-251 40-185 (249)
365 COG4172 ABC-type uncharacteriz 99.9 3.3E-27 7.1E-32 215.8 15.3 160 87-254 5-198 (534)
366 COG4107 PhnK ABC-type phosphon 99.9 6.5E-27 1.4E-31 193.1 12.2 165 87-262 5-199 (258)
367 COG0396 sufC Cysteine desulfur 99.9 5.1E-26 1.1E-30 194.9 16.7 162 88-261 3-191 (251)
368 COG4586 ABC-type uncharacteriz 99.9 2.1E-26 4.6E-31 201.5 12.4 138 104-254 37-197 (325)
369 KOG0059|consensus 99.9 1.7E-25 3.8E-30 228.2 14.2 163 87-263 563-747 (885)
370 KOG0927|consensus 99.9 6.7E-26 1.5E-30 213.2 9.7 160 87-259 388-554 (614)
371 cd03278 ABC_SMC_barmotin Barmo 99.9 1.6E-25 3.5E-30 191.4 11.1 127 108-260 14-163 (197)
372 cd03270 ABC_UvrA_I The excisio 99.9 9.4E-25 2E-29 190.4 13.7 141 104-256 8-182 (226)
373 COG4615 PvdE ABC-type sideroph 99.9 1.7E-23 3.7E-28 191.1 17.6 182 62-257 297-492 (546)
374 cd03272 ABC_SMC3_euk Eukaryoti 99.9 2.2E-24 4.7E-29 189.2 11.3 162 89-260 4-208 (243)
375 cd03271 ABC_UvrA_II The excisi 99.9 2.5E-23 5.5E-28 184.9 12.0 145 106-261 10-219 (261)
376 KOG0064|consensus 99.9 2.2E-23 4.8E-28 195.7 11.5 166 87-256 480-655 (728)
377 cd03240 ABC_Rad50 The catalyti 99.9 1.4E-22 2.9E-27 174.3 10.7 126 110-260 16-168 (204)
378 cd03273 ABC_SMC2_euk Eukaryoti 99.9 1.2E-22 2.6E-27 179.6 10.0 143 117-260 25-216 (251)
379 KOG0066|consensus 99.9 2.4E-22 5.1E-27 185.6 11.6 159 87-258 585-748 (807)
380 cd03279 ABC_sbcCD SbcCD and ot 99.9 3.5E-22 7.6E-27 172.5 11.4 151 88-261 5-180 (213)
381 KOG0062|consensus 99.9 1.7E-22 3.7E-27 189.3 9.4 149 87-252 79-237 (582)
382 COG1245 Predicted ATPase, RNas 99.9 7.2E-22 1.6E-26 183.1 12.6 145 106-263 351-504 (591)
383 KOG0065|consensus 99.9 3.3E-22 7.2E-27 203.9 9.6 145 103-254 803-971 (1391)
384 COG1129 MglA ABC-type sugar tr 99.9 2.6E-21 5.7E-26 183.6 14.1 165 88-261 263-448 (500)
385 KOG0927|consensus 99.9 2.1E-21 4.5E-26 183.0 13.1 159 87-252 74-260 (614)
386 cd03274 ABC_SMC4_euk Eukaryoti 99.9 2.7E-22 6E-27 173.4 4.6 158 88-260 5-177 (212)
387 cd03275 ABC_SMC1_euk Eukaryoti 99.8 2.5E-21 5.5E-26 170.8 8.0 142 118-260 23-205 (247)
388 COG4138 BtuD ABC-type cobalami 99.8 4E-21 8.6E-26 159.0 5.8 155 88-262 3-180 (248)
389 KOG0062|consensus 99.8 3.1E-20 6.8E-25 174.2 10.3 156 86-252 360-521 (582)
390 cd03276 ABC_SMC6_euk Eukaryoti 99.8 1.2E-19 2.5E-24 155.4 12.7 131 107-260 12-159 (198)
391 PRK00635 excinuclease ABC subu 99.8 3E-19 6.5E-24 189.6 14.6 53 207-260 803-858 (1809)
392 PRK00349 uvrA excinuclease ABC 99.8 1E-18 2.2E-23 178.2 13.7 54 207-261 824-880 (943)
393 COG3845 ABC-type uncharacteriz 99.8 1.2E-17 2.6E-22 156.6 18.3 165 86-258 255-448 (501)
394 cd03239 ABC_SMC_head The struc 99.8 1.6E-18 3.5E-23 146.0 8.6 126 110-260 15-144 (178)
395 KOG2355|consensus 99.8 6.8E-18 1.5E-22 143.0 11.4 153 86-254 11-188 (291)
396 TIGR00630 uvra excinuclease AB 99.8 1.7E-17 3.7E-22 169.0 15.8 53 207-260 822-877 (924)
397 COG1245 Predicted ATPase, RNas 99.7 3.4E-18 7.3E-23 158.9 8.3 154 93-263 79-262 (591)
398 cd03280 ABC_MutS2 MutS2 homolo 99.7 9E-18 2E-22 143.6 10.1 113 107-261 17-138 (200)
399 COG2401 ABC-type ATPase fused 99.7 4.1E-17 8.9E-22 150.3 10.1 142 104-255 396-549 (593)
400 cd03277 ABC_SMC5_euk Eukaryoti 99.7 6.6E-17 1.4E-21 139.9 8.7 142 107-256 14-173 (213)
401 KOG0065|consensus 99.7 9.3E-17 2E-21 164.5 8.9 153 104-257 128-303 (1391)
402 cd03283 ABC_MutS-like MutS-lik 99.6 2.8E-16 6.1E-21 134.6 7.6 120 104-261 14-135 (199)
403 cd03242 ABC_RecF RecF is a rec 99.6 2.8E-15 6E-20 134.1 13.5 45 212-256 182-235 (270)
404 cd03227 ABC_Class2 ABC-type Cl 99.6 1.8E-15 3.8E-20 125.4 10.2 108 110-261 14-128 (162)
405 COG4170 SapD ABC-type antimicr 99.6 7.3E-16 1.6E-20 131.3 7.2 156 89-255 4-200 (330)
406 KOG0066|consensus 99.6 1.2E-15 2.6E-20 141.5 8.8 164 88-261 264-459 (807)
407 cd00820 PEPCK_HprK Phosphoenol 99.6 1.4E-15 3E-20 117.4 6.6 63 105-175 3-78 (107)
408 cd03241 ABC_RecN RecN ATPase i 99.6 4.7E-15 1E-19 133.0 10.4 47 213-260 170-220 (276)
409 cd03285 ABC_MSH2_euk MutS2 hom 99.6 1.6E-15 3.5E-20 132.1 3.5 111 104-252 17-133 (222)
410 KOG0063|consensus 99.5 2.6E-14 5.6E-19 132.3 10.9 142 96-250 343-493 (592)
411 PRK00635 excinuclease ABC subu 99.5 6E-14 1.3E-18 149.7 14.1 64 196-261 1683-1749(1809)
412 cd03282 ABC_MSH4_euk MutS4 hom 99.5 5.6E-14 1.2E-18 120.8 9.9 122 104-262 16-139 (204)
413 cd03243 ABC_MutS_homologs The 99.5 2E-14 4.3E-19 123.1 6.9 116 109-260 21-137 (202)
414 COG0178 UvrA Excinuclease ATPa 99.5 1.9E-13 4.2E-18 134.6 12.8 59 201-261 811-872 (935)
415 cd01128 rho_factor Transcripti 99.5 7.4E-14 1.6E-18 123.5 9.0 135 110-250 9-172 (249)
416 cd03281 ABC_MSH5_euk MutS5 hom 99.4 1.6E-12 3.4E-17 112.5 10.8 117 105-262 17-139 (213)
417 TIGR01069 mutS2 MutS2 family p 99.4 8.1E-12 1.8E-16 126.1 15.5 135 88-260 295-431 (771)
418 TIGR00606 rad50 rad50. This fa 99.3 2.5E-12 5.5E-17 136.8 9.5 88 163-254 1153-1246(1311)
419 PTZ00132 GTP-binding nuclear p 99.3 5.7E-13 1.2E-17 114.7 3.6 39 218-256 157-200 (215)
420 PF02463 SMC_N: RecF/RecN/SMC 99.3 7.1E-12 1.5E-16 108.2 8.7 43 213-255 136-182 (220)
421 PRK00064 recF recombination pr 99.3 3.8E-11 8.2E-16 111.8 13.0 44 212-255 272-324 (361)
422 smart00534 MUTSac ATPase domai 99.3 3.5E-12 7.7E-17 107.8 5.5 53 209-262 57-109 (185)
423 cd03284 ABC_MutS1 MutS1 homolo 99.3 3.4E-11 7.3E-16 104.5 10.3 36 104-140 18-53 (216)
424 cd03287 ABC_MSH3_euk MutS3 hom 99.2 3.6E-11 7.8E-16 104.7 9.3 48 104-151 18-66 (222)
425 KOG0063|consensus 99.2 1.1E-11 2.4E-16 115.0 4.0 125 114-251 97-251 (592)
426 TIGR02858 spore_III_AA stage I 99.1 1.2E-10 2.5E-15 104.3 7.9 36 118-153 112-147 (270)
427 PRK00409 recombination and DNA 99.1 4.4E-09 9.6E-14 106.7 19.5 52 209-261 386-437 (782)
428 TIGR03238 dnd_assoc_3 dnd syst 99.1 1.2E-10 2.6E-15 110.5 5.0 48 104-153 19-67 (504)
429 TIGR00630 uvra excinuclease AB 99.0 5.7E-10 1.2E-14 114.4 8.4 53 207-260 481-535 (924)
430 PRK06793 fliI flagellum-specif 99.0 1.5E-09 3.3E-14 102.6 10.0 126 88-247 130-262 (432)
431 PRK00349 uvrA excinuclease ABC 98.9 9.4E-10 2E-14 113.0 6.5 53 207-260 483-537 (943)
432 cd03286 ABC_MSH6_euk MutS6 hom 98.9 2.7E-09 5.9E-14 92.7 7.9 119 104-262 17-140 (218)
433 TIGR00767 rho transcription te 98.9 9.9E-09 2.1E-13 96.0 10.6 91 62-161 108-209 (415)
434 PRK08533 flagellar accessory p 98.9 1.2E-08 2.5E-13 89.4 9.8 120 113-260 20-149 (230)
435 PHA02562 46 endonuclease subun 98.9 2.6E-09 5.7E-14 104.5 5.9 61 198-259 447-524 (562)
436 smart00382 AAA ATPases associa 98.9 4.3E-08 9.2E-13 76.1 11.6 99 116-253 1-100 (148)
437 PRK13695 putative NTPase; Prov 98.8 4.4E-09 9.6E-14 87.8 4.6 113 119-249 2-116 (174)
438 cd02023 UMPK Uridine monophosp 98.8 1.1E-08 2.3E-13 87.1 5.4 108 119-248 1-115 (198)
439 cd01130 VirB11-like_ATPase Typ 98.7 1.5E-08 3.4E-13 85.6 5.9 69 106-174 14-95 (186)
440 PRK06995 flhF flagellar biosyn 98.7 8.6E-09 1.9E-13 98.9 4.4 63 106-174 245-307 (484)
441 TIGR02788 VirB11 P-type DNA tr 98.7 2.5E-08 5.5E-13 90.9 7.2 41 110-150 137-177 (308)
442 PRK06002 fliI flagellum-specif 98.7 8.4E-08 1.8E-12 91.2 8.6 63 87-152 138-200 (450)
443 PF13304 AAA_21: AAA domain; P 98.6 4.1E-08 9E-13 83.6 5.2 43 212-254 235-280 (303)
444 cd01131 PilT Pilus retraction 98.6 1.3E-07 2.8E-12 80.8 8.1 30 119-148 3-33 (198)
445 cd01124 KaiC KaiC is a circadi 98.6 2E-07 4.4E-12 77.9 8.6 47 206-252 64-119 (187)
446 PRK07196 fliI flagellum-specif 98.6 6.8E-08 1.5E-12 91.6 6.3 70 104-174 143-235 (434)
447 cd01120 RecA-like_NTPases RecA 98.6 2.5E-07 5.4E-12 74.6 8.8 101 119-247 1-101 (165)
448 PRK01889 GTPase RsgA; Reviewed 98.6 5.6E-08 1.2E-12 90.4 5.1 71 106-176 184-264 (356)
449 TIGR00634 recN DNA repair prot 98.6 8.9E-08 1.9E-12 94.2 5.9 48 212-260 439-490 (563)
450 PRK10869 recombination and rep 98.5 1E-07 2.2E-12 93.5 6.2 47 213-260 430-480 (553)
451 TIGR00101 ureG urease accessor 98.5 8.4E-08 1.8E-12 82.2 3.2 100 119-218 3-108 (199)
452 TIGR00235 udk uridine kinase. 98.5 1.3E-07 2.8E-12 81.2 3.8 44 114-165 3-46 (207)
453 TIGR01420 pilT_fam pilus retra 98.4 8.2E-07 1.8E-11 82.2 9.0 99 114-257 119-218 (343)
454 PRK01156 chromosome segregatio 98.4 2.7E-07 5.9E-12 95.3 6.2 45 210-254 798-848 (895)
455 TIGR00618 sbcc exonuclease Sbc 98.4 4.9E-07 1.1E-11 94.9 6.5 51 209-260 946-1006(1042)
456 PRK03918 chromosome segregatio 98.4 4.8E-07 1.1E-11 93.1 6.1 50 210-260 785-840 (880)
457 PRK10246 exonuclease subunit S 98.4 5.6E-07 1.2E-11 94.3 6.5 51 209-260 945-1003(1047)
458 TIGR02524 dot_icm_DotB Dot/Icm 98.3 1E-06 2.2E-11 82.0 6.9 75 115-189 132-233 (358)
459 PRK07721 fliI flagellum-specif 98.3 5.7E-07 1.2E-11 85.7 5.2 48 104-152 146-193 (438)
460 TIGR02168 SMC_prok_B chromosom 98.3 5.5E-07 1.2E-11 94.6 5.5 50 209-259 1085-1138(1179)
461 PF13555 AAA_29: P-loop contai 98.3 6.9E-07 1.5E-11 62.2 4.2 38 107-144 12-50 (62)
462 COG3910 Predicted ATPase [Gene 98.3 2.9E-06 6.3E-11 71.7 8.3 122 118-254 38-169 (233)
463 PRK06067 flagellar accessory p 98.3 1.2E-05 2.7E-10 70.1 12.1 111 113-246 21-135 (234)
464 TIGR00611 recf recF protein. A 98.3 9.8E-07 2.1E-11 82.4 5.2 45 212-256 274-327 (365)
465 PRK00300 gmk guanylate kinase; 98.3 7.2E-07 1.6E-11 76.0 3.7 28 115-142 3-30 (205)
466 TIGR02546 III_secr_ATP type II 98.2 1.9E-06 4.1E-11 81.9 6.6 48 104-152 133-180 (422)
467 cd01136 ATPase_flagellum-secre 98.2 1.5E-06 3.2E-11 79.8 5.6 47 103-150 56-102 (326)
468 PRK07594 type III secretion sy 98.2 1.3E-06 2.9E-11 82.8 5.3 62 88-152 129-190 (433)
469 PRK08149 ATP synthase SpaL; Va 98.2 1.7E-06 3.7E-11 82.0 5.9 48 104-152 139-189 (428)
470 PRK10078 ribose 1,5-bisphospho 98.2 1.4E-06 3E-11 73.5 4.7 27 117-143 2-28 (186)
471 cd01876 YihA_EngB The YihA (En 98.2 1.8E-06 3.9E-11 69.5 4.9 47 206-256 115-166 (170)
472 cd02025 PanK Pantothenate kina 98.2 8.9E-07 1.9E-11 77.0 3.2 45 119-167 1-45 (220)
473 PRK09862 putative ATP-dependen 98.2 1.8E-06 3.9E-11 83.6 5.2 59 91-152 187-245 (506)
474 PRK09825 idnK D-gluconate kina 98.2 1.8E-06 4E-11 72.5 4.4 33 116-152 2-34 (176)
475 PRK00454 engB GTP-binding prot 98.2 2.8E-06 6E-11 71.3 5.4 53 206-263 140-195 (196)
476 PRK09099 type III secretion sy 98.1 3.2E-06 7E-11 80.5 5.8 48 104-152 151-198 (441)
477 PLN02796 D-glycerate 3-kinase 98.1 8.3E-07 1.8E-11 81.8 1.7 48 105-152 80-138 (347)
478 PRK14079 recF recombination pr 98.1 3.2E-06 6.9E-11 78.5 5.6 44 212-255 262-314 (349)
479 PRK05480 uridine/cytidine kina 98.1 2.9E-06 6.3E-11 72.7 4.9 44 115-166 4-47 (209)
480 PRK15494 era GTPase Era; Provi 98.1 2.2E-06 4.8E-11 79.3 3.9 54 86-141 16-76 (339)
481 PRK06315 type III secretion sy 98.1 7.1E-06 1.5E-10 78.2 7.3 87 105-192 153-276 (442)
482 cd01125 repA Hexameric Replica 98.1 7E-06 1.5E-10 72.0 6.8 22 117-138 1-22 (239)
483 PRK09270 nucleoside triphospha 98.1 2.1E-06 4.5E-11 74.9 3.4 35 115-149 31-65 (229)
484 TIGR03498 FliI_clade3 flagella 98.1 3.1E-06 6.7E-11 80.2 4.7 47 105-152 129-175 (418)
485 TIGR03497 FliI_clade2 flagella 98.1 4.7E-06 1E-10 78.9 5.8 48 104-152 125-172 (413)
486 PF09818 ABC_ATPase: Predicted 98.1 1.1E-05 2.5E-10 75.9 8.2 126 112-257 240-366 (448)
487 TIGR02169 SMC_prok_A chromosom 98.1 3.3E-06 7.1E-11 88.9 5.1 44 211-254 1072-1119(1164)
488 TIGR01026 fliI_yscN ATPase Fli 98.1 4.1E-06 9E-11 79.9 4.9 46 104-150 151-196 (440)
489 PLN02318 phosphoribulokinase/u 98.1 4E-06 8.7E-11 82.0 4.7 55 118-173 66-127 (656)
490 PRK13830 conjugal transfer pro 98.1 3E-05 6.5E-10 79.6 11.3 38 109-146 448-485 (818)
491 TIGR02680 conserved hypothetic 98.0 6.1E-06 1.3E-10 88.6 6.1 47 209-255 1243-1301(1353)
492 PF13558 SbcCD_C: Putative exo 98.0 6.9E-06 1.5E-10 61.5 4.7 46 209-254 28-86 (90)
493 PRK05922 type III secretion sy 98.0 7.6E-06 1.6E-10 77.7 5.7 48 104-152 145-192 (434)
494 TIGR02903 spore_lon_C ATP-depe 98.0 2.4E-05 5.2E-10 77.8 9.5 33 115-147 173-205 (615)
495 PRK10416 signal recognition pa 98.0 6.2E-06 1.3E-10 75.7 5.0 37 115-151 112-148 (318)
496 TIGR00606 rad50 rad50. This fa 98.0 8.3E-06 1.8E-10 87.6 6.5 129 118-257 29-179 (1311)
497 PRK07960 fliI flagellum-specif 98.0 9E-06 1.9E-10 77.5 5.5 46 106-152 165-213 (455)
498 PRK05688 fliI flagellum-specif 98.0 8E-06 1.7E-10 77.9 5.1 40 104-144 156-195 (451)
499 PRK14723 flhF flagellar biosyn 98.0 5.7E-06 1.2E-10 83.3 4.2 52 106-161 174-225 (767)
500 TIGR00554 panK_bact pantothena 98.0 5.1E-06 1.1E-10 75.2 3.2 48 118-171 63-112 (290)
No 1
>KOG0054|consensus
Probab=100.00 E-value=4.8e-68 Score=544.97 Aligned_cols=265 Identities=45% Similarity=0.832 Sum_probs=246.9
Q ss_pred CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhcCCCCH------------------
Q psy1503 1 MYAWEKPFTALVDQARKIEIGVVQKTSYLRGLYMTFNLFTTRMALFCTLTSFI-FFGGRLST------------------ 61 (265)
Q Consensus 1 ~~~we~~f~~~i~~~r~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~------------------ 61 (265)
|||||+.|.+++++.|++|++.+++..++.+++.+++.+.|.++++++|++|+ ..++.+++
T Consensus 395 ~yaWE~~F~~~I~~~R~~El~~lrk~~~~~~~~~~~~~~~p~lv~~~tF~~~v~~~~~~lt~~~aF~slalfniLr~pl~ 474 (1381)
T KOG0054|consen 395 LYAWEKPFLKKIEDLRQKELKLLRKSAYLSALNSFLNFFSPVLVSVVTFVVFVLLLGNLLTASTAFTSLALFNILRFPLF 474 (1381)
T ss_pred hHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCccccHhHHHHHHHHHHHHHHHHH
Confidence 69999999999999999999999999999999999999999999999999999 55766766
Q ss_pred ----------------HHHHHHHhcCCCCCCcCC-CCCCCCCCcEEEEeEEEEeCCCCCCcceeeceEEEcCCcEEEEEc
Q psy1503 62 ----------------DRVLNFLLLGEHEPRKIN-SVHSNGKGHVSLDNVTAQWSLQNADLTLNAVSITFKPKQLACIIG 124 (265)
Q Consensus 62 ----------------~ri~~~l~~~~~~~~~~~-~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~ivG 124 (265)
+|+++||..+|.++.... ....+.+..++++|.+|+|+.....+.|+||||+|++|+++||||
T Consensus 475 ~~P~~i~~~vqa~VS~~Ri~~fl~~~e~~~~~~~~~~~~~~~~~i~i~~~sfsW~~~~~~~tL~dIn~~i~~G~lvaVvG 554 (1381)
T KOG0054|consen 475 MLPSVISQLVQAKVSLKRLKEFLLSEELDPDSVERSPDEAGENAIEIKNGSFSWDSESPEPTLKDINFEIKKGQLVAVVG 554 (1381)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCcccCccccccCCCCCCCceEEEeeeeEecCCCCCcccccceeEEecCCCEEEEEC
Confidence 999999998876544332 122234457999999999987545569999999999999999999
Q ss_pred CCCChHHHHHHHHhcCcCCCccEEEEcCeEEEEecCCCCccccHHHHHhcCCcccHHHHHHHHHHhcchhHHhcCCCCCc
Q psy1503 125 AIGAGKTSLLHIILNELRISSGKVSLGGTVSYASQEPWIFAATIRQNILFGLPYLRRRYADVIRVCALQDDFDSLPNGDF 204 (265)
Q Consensus 125 ~~GsGKSTLl~~l~g~~~~~~G~i~~~g~i~~v~Q~~~l~~~ti~eni~~~~~~~~~~~~~~~~~~~l~~~i~~l~~g~~ 204 (265)
|+|||||||+++|+|++++.+|+|.++|.++||||+||+|++||||||+||.++++++|++++++|+|.+|++.||.||.
T Consensus 555 ~vGsGKSSLL~AiLGEm~~~sG~v~v~gsiaYv~Q~pWI~ngTvreNILFG~~~d~~rY~~Vi~aC~L~~Dle~Lp~GD~ 634 (1381)
T KOG0054|consen 555 PVGSGKSSLLSAILGEMPKLSGSVAVNGSVAYVPQQPWIQNGTVRENILFGSPYDEERYDKVIKACALKKDLEILPFGDL 634 (1381)
T ss_pred CCCCCHHHHHHHHhcCcccccceEEEcCeEEEeccccHhhCCcHHHhhhcCccccHHHHHHHHHHccCHhHHhhcCCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHHhhcCC
Q psy1503 205 TVVGERGASLSGGQKARINLARAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGCLTSGL 265 (265)
Q Consensus 205 t~vg~~g~~LSgGqrqRialARal~~~~~illLDEp~s~LD~~~~~~i~~~~i~~~l~~~~ 265 (265)
|+|||+|.+|||||||||+||||+|+++|||+||||+||||+|+.+|||++||.++|++|+
T Consensus 635 TeIGErGinLSGGQKqRIsLARAVY~~adIYLLDDplSAVDahvg~~if~~ci~~~L~~KT 695 (1381)
T KOG0054|consen 635 TEIGERGINLSGGQKQRISLARAVYQDADIYLLDDPLSAVDAHVGKHIFEECIRGLLRGKT 695 (1381)
T ss_pred ceecCCccCCcHhHHHHHHHHHHHhccCCEEEEcCcchhhhHhhhHHHHHHHHHhhhcCCE
Confidence 9999999999999999999999999999999999999999999999999999999999884
No 2
>PLN03130 ABC transporter C family member; Provisional
Probab=100.00 E-value=8e-59 Score=493.88 Aligned_cols=263 Identities=38% Similarity=0.647 Sum_probs=234.0
Q ss_pred CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCH-------------------
Q psy1503 1 MYAWEKPFTALVDQARKIEIGVVQKTSYLRGLYMTFNLFTTRMALFCTLTSFIFFGGRLST------------------- 61 (265)
Q Consensus 1 ~~~we~~f~~~i~~~r~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~------------------- 61 (265)
+|+||+.|.+++++.|++|++..++..++.++..+++.+.+.++++++|+.|.+.++.+++
T Consensus 494 ~~~~E~~~~~~i~~~r~~e~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fg~~~~~~g~Lt~g~vf~~l~l~~~l~~pl~~ 573 (1622)
T PLN03130 494 CYAWENSFQSKVQTVRDDELSWFRKAQLLSAFNSFILNSIPVLVTVVSFGVFTLLGGDLTPARAFTSLSLFAVLRFPLFM 573 (1622)
T ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 4899999999999999999999999999888888777777767777778888777666655
Q ss_pred ---------------HHHHHHHhcCCCCCCcCCCCCCCCCCcEEEEeEEEEeCCCCCCcceeeceEEEcCCcEEEEEcCC
Q psy1503 62 ---------------DRVLNFLLLGEHEPRKINSVHSNGKGHVSLDNVTAQWSLQNADLTLNAVSITFKPKQLACIIGAI 126 (265)
Q Consensus 62 ---------------~ri~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~ivG~~ 126 (265)
+||.+|+..++....... ........|+++|++|+|+....+++|+|+||+|++|++++|+||+
T Consensus 574 l~~~i~~~~~a~~s~~RI~~~L~~~e~~~~~~~-~~~~~~~~I~~~nvsf~y~~~~~~~vL~~inl~i~~Ge~vaIvG~s 652 (1622)
T PLN03130 574 LPNLITQAVNANVSLKRLEELLLAEERVLLPNP-PLEPGLPAISIKNGYFSWDSKAERPTLSNINLDVPVGSLVAIVGST 652 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCcccccccCC-cccCCCCceEEEeeEEEccCCCCCceeeceeEEecCCCEEEEECCC
Confidence 999999976543211111 0111224699999999997533467999999999999999999999
Q ss_pred CChHHHHHHHHhcCcCCCc-cEEEEcCeEEEEecCCCCccccHHHHHhcCCcccHHHHHHHHHHhcchhHHhcCCCCCcc
Q psy1503 127 GAGKTSLLHIILNELRISS-GKVSLGGTVSYASQEPWIFAATIRQNILFGLPYLRRRYADVIRVCALQDDFDSLPNGDFT 205 (265)
Q Consensus 127 GsGKSTLl~~l~g~~~~~~-G~i~~~g~i~~v~Q~~~l~~~ti~eni~~~~~~~~~~~~~~~~~~~l~~~i~~l~~g~~t 205 (265)
|||||||+++|+|+++|++ |+|.+.+.|+||+|+||+|++||||||+||.++++++|++++++|++.++++.+|+||+|
T Consensus 653 GSGKSTLl~lLlG~~~~~~GG~I~l~~~Iayv~Q~p~LfngTIreNI~fg~~~d~e~y~~vl~a~~L~~di~~LP~Gd~T 732 (1622)
T PLN03130 653 GEGKTSLISAMLGELPPRSDASVVIRGTVAYVPQVSWIFNATVRDNILFGSPFDPERYERAIDVTALQHDLDLLPGGDLT 732 (1622)
T ss_pred CCCHHHHHHHHHHhhccCCCceEEEcCeEEEEcCccccCCCCHHHHHhCCCcccHHHHHHHHHHhCcHHHHHhCCCcccc
Confidence 9999999999999999999 999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHHhhcC
Q psy1503 206 VVGERGASLSGGQKARINLARAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGCLTSG 264 (265)
Q Consensus 206 ~vg~~g~~LSgGqrqRialARal~~~~~illLDEp~s~LD~~~~~~i~~~~i~~~l~~~ 264 (265)
.|||+|.+|||||||||+||||+|++|+||||||||||||++++++|+++|+.+.+++|
T Consensus 733 ~IGe~G~~LSGGQKQRIaLARAly~~~~IlLLDEptSALD~~~~~~I~~~~l~~~l~~k 791 (1622)
T PLN03130 733 EIGERGVNISGGQKQRVSMARAVYSNSDVYIFDDPLSALDAHVGRQVFDKCIKDELRGK 791 (1622)
T ss_pred cccCCCCCCCHHHHHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHhhHHhcCC
Confidence 99999999999999999999999999999999999999999999999999998888776
No 3
>KOG0058|consensus
Probab=100.00 E-value=4.4e-58 Score=442.46 Aligned_cols=202 Identities=26% Similarity=0.489 Sum_probs=182.8
Q ss_pred HHHHHHHhcCCCCCCcCCCCCCCCCCcEEEEeEEEEeCCCCCCcceeeceEEEcCCcEEEEEcCCCChHHHHHHHHhcCc
Q psy1503 62 DRVLNFLLLGEHEPRKINSVHSNGKGHVSLDNVTAQWSLQNADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNEL 141 (265)
Q Consensus 62 ~ri~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~g~~ 141 (265)
+|++++++.+|.-+......|....+.|+|+||+|+||..++.++|+|+||+|+|||++|+|||||+||||++++|.++|
T Consensus 439 ~rvFel~dr~P~i~~~G~~~p~~~~G~IeF~~VsFaYP~Rp~~~Vlk~lsfti~pGe~vALVGPSGsGKSTiasLL~rfY 518 (716)
T KOG0058|consen 439 ERVFELMDRKPRIPLTGTLAPDHLQGVIEFEDVSFAYPTRPDVPVLKNLSFTIRPGEVVALVGPSGSGKSTIASLLLRFY 518 (716)
T ss_pred HHHHHHhccCCCCCCCCccccccccceEEEEEeeeecCCCCCchhhcCceeeeCCCCEEEEECCCCCCHHHHHHHHHHhc
Confidence 99999999766433222112223567899999999999887788999999999999999999999999999999999999
Q ss_pred CCCccEEEEcCe-------------EEEEecCCCCccccHHHHHhcCCc-ccHHHHHHHHHHhcchhHHhcCCCCCcccc
Q psy1503 142 RISSGKVSLGGT-------------VSYASQEPWIFAATIRQNILFGLP-YLRRRYADVIRVCALQDDFDSLPNGDFTVV 207 (265)
Q Consensus 142 ~~~~G~i~~~g~-------------i~~v~Q~~~l~~~ti~eni~~~~~-~~~~~~~~~~~~~~l~~~i~~l~~g~~t~v 207 (265)
+|++|+|.+||. ||+|.|||.||++||+|||.||.+ .+++++..+.+.++.+++|..+|+||+|.|
T Consensus 519 ~PtsG~IllDG~~i~~~~~~~lr~~Ig~V~QEPvLFs~sI~eNI~YG~~~~t~e~i~~AAk~ANah~FI~~~p~gY~T~V 598 (716)
T KOG0058|consen 519 DPTSGRILLDGVPISDINHKYLRRKIGLVGQEPVLFSGSIRENIAYGLDNATDEEIEAAAKMANAHEFITNFPDGYNTVV 598 (716)
T ss_pred CCCCCeEEECCeehhhcCHHHHHHHeeeeeccceeecccHHHHHhcCCCCCCHHHHHHHHHHhChHHHHHhCcccccccc
Confidence 999999999994 999999999999999999999976 357888999999999999999999999999
Q ss_pred CCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHHhhcC
Q psy1503 208 GERGASLSGGQKARINLARAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGCLTSG 264 (265)
Q Consensus 208 g~~g~~LSgGqrqRialARal~~~~~illLDEp~s~LD~~~~~~i~~~~i~~~l~~~ 264 (265)
||+|.+|||||||||||||||++||.||||||+|||||++++..+ ++++.++++++
T Consensus 599 GEkG~qLSGGQKQRIAIARALlr~P~VLILDEATSALDaeSE~lV-q~aL~~~~~~r 654 (716)
T KOG0058|consen 599 GEKGSQLSGGQKQRIAIARALLRNPRVLILDEATSALDAESEYLV-QEALDRLMQGR 654 (716)
T ss_pred CCccccccchHHHHHHHHHHHhcCCCEEEEechhhhcchhhHHHH-HHHHHHhhcCC
Confidence 999999999999999999999999999999999999999998665 88888888775
No 4
>PLN03232 ABC transporter C family member; Provisional
Probab=100.00 E-value=1.7e-57 Score=482.36 Aligned_cols=263 Identities=37% Similarity=0.631 Sum_probs=229.4
Q ss_pred CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCH-------------------
Q psy1503 1 MYAWEKPFTALVDQARKIEIGVVQKTSYLRGLYMTFNLFTTRMALFCTLTSFIFFGGRLST------------------- 61 (265)
Q Consensus 1 ~~~we~~f~~~i~~~r~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~------------------- 61 (265)
+|+||+.|.+++++.|++|++..++..+..++...+....+.++.+++|+.|.+.++.+++
T Consensus 494 ~~~~e~~~~~~~~~~r~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fg~~~v~~~~lt~g~vf~~l~l~~~l~~pl~~ 573 (1495)
T PLN03232 494 CYAWEKSFESRIQGIRNEELSWFRKAQLLSAFNSFILNSIPVVVTLVSFGVFVLLGGDLTPARAFTSLSLFAVLRSPLNM 573 (1495)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 4899999999999999999999999988888777766666666666777777766665555
Q ss_pred ---------------HHHHHHHhcCCCCCCcCCCCCCCCCCcEEEEeEEEEeCCCCCCcceeeceEEEcCCcEEEEEcCC
Q psy1503 62 ---------------DRVLNFLLLGEHEPRKINSVHSNGKGHVSLDNVTAQWSLQNADLTLNAVSITFKPKQLACIIGAI 126 (265)
Q Consensus 62 ---------------~ri~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~ivG~~ 126 (265)
+||.+|+..++....... ........|+++|++|+|+....+++|+|+||+|++|++++|+||+
T Consensus 574 l~~~~~~~~~a~~s~~Ri~~~L~~~~~~~~~~~-~~~~~~~~I~~~~vsF~y~~~~~~~vL~~inl~i~~Ge~vaIvG~s 652 (1495)
T PLN03232 574 LPNLLSQVVNANVSLQRIEELLLSEERILAQNP-PLQPGAPAISIKNGYFSWDSKTSKPTLSDINLEIPVGSLVAIVGGT 652 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCccccccccC-CcCCCCCcEEEEeeEEEcCCCCCCceeeeeEEEEcCCCEEEEECCC
Confidence 999999986543111111 1111234699999999997533467999999999999999999999
Q ss_pred CChHHHHHHHHhcCcCCCccE-EEEcCeEEEEecCCCCccccHHHHHhcCCcccHHHHHHHHHHhcchhHHhcCCCCCcc
Q psy1503 127 GAGKTSLLHIILNELRISSGK-VSLGGTVSYASQEPWIFAATIRQNILFGLPYLRRRYADVIRVCALQDDFDSLPNGDFT 205 (265)
Q Consensus 127 GsGKSTLl~~l~g~~~~~~G~-i~~~g~i~~v~Q~~~l~~~ti~eni~~~~~~~~~~~~~~~~~~~l~~~i~~l~~g~~t 205 (265)
|||||||+++|+|+++|++|. +.+.+.|+||+|+||+|++||||||.||.++++++|++++++|++.++++.+|+||+|
T Consensus 653 GSGKSTLl~lLlG~~~~~~G~i~~~~~~Iayv~Q~p~Lf~gTIreNI~fg~~~~~e~~~~vl~~~~L~~di~~Lp~Gd~T 732 (1495)
T PLN03232 653 GEGKTSLISAMLGELSHAETSSVVIRGSVAYVPQVSWIFNATVRENILFGSDFESERYWRAIDVTALQHDLDLLPGRDLT 732 (1495)
T ss_pred CCcHHHHHHHHhCCCcccCCCEEEecCcEEEEcCccccccccHHHHhhcCCccCHHHHHHHHHHhCCHHHHHhCCCCCCc
Confidence 999999999999999999975 5678899999999999999999999999988999999999999999999999999999
Q ss_pred ccCCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHHhhcC
Q psy1503 206 VVGERGASLSGGQKARINLARAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGCLTSG 264 (265)
Q Consensus 206 ~vg~~g~~LSgGqrqRialARal~~~~~illLDEp~s~LD~~~~~~i~~~~i~~~l~~~ 264 (265)
.|||+|.+|||||||||+||||+|++|+||||||||||||++++++|+++|+.+.+++|
T Consensus 733 ~IGe~G~~LSGGQkQRIaLARAly~~~~IlLLDEptSaLD~~t~~~I~~~~l~~~l~~k 791 (1495)
T PLN03232 733 EIGERGVNISGGQKQRVSMARAVYSNSDIYIFDDPLSALDAHVAHQVFDSCMKDELKGK 791 (1495)
T ss_pred eecCCCcccCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHhhhhhcCC
Confidence 99999999999999999999999999999999999999999999999999998877766
No 5
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=100.00 E-value=3.5e-55 Score=424.24 Aligned_cols=200 Identities=31% Similarity=0.477 Sum_probs=173.6
Q ss_pred HHHHHHHhcCCCCCCcCC--C-CCCCCCCcEEEEeEEEEeCCCCCCcceeeceEEEcCCcEEEEEcCCCChHHHHHHHHh
Q psy1503 62 DRVLNFLLLGEHEPRKIN--S-VHSNGKGHVSLDNVTAQWSLQNADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIIL 138 (265)
Q Consensus 62 ~ri~~~l~~~~~~~~~~~--~-~~~~~~~~i~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~ 138 (265)
+|+.++++.++..+.... . ......+.|+++||+|+|+++ +++|+|+||+|++|+.++|+||||||||||+++|+
T Consensus 305 ~ri~~~l~~~~~~~~~~~~~~~~~~~~~~~I~~~~vsf~Y~~~--~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~ 382 (529)
T TIGR02868 305 ERIEEVTGAKGPRPEGVVPAAGALGLGKPTLELRDLSFGYPGS--PPVLDGVSLDLPPGERVAILGPSGSGKSTLLMLLT 382 (529)
T ss_pred HHHHHHhcCCCCcCCCCCCCCcccCCCCceEEEEEEEEecCCC--CceeecceEEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence 999999976543211110 0 011123469999999999743 46999999999999999999999999999999999
Q ss_pred cCcCCCccEEEEcC------------eEEEEecCCCCccccHHHHHhcCCc-ccHHHHHHHHHHhcchhHHhcCCCCCcc
Q psy1503 139 NELRISSGKVSLGG------------TVSYASQEPWIFAATIRQNILFGLP-YLRRRYADVIRVCALQDDFDSLPNGDFT 205 (265)
Q Consensus 139 g~~~~~~G~i~~~g------------~i~~v~Q~~~l~~~ti~eni~~~~~-~~~~~~~~~~~~~~l~~~i~~l~~g~~t 205 (265)
|+++|++|+|.++| .++||||+|++|++||+|||.+|.+ .++++++++++.+++++++..+|+|++|
T Consensus 383 g~~~p~~G~I~i~g~~i~~~~~~lr~~i~~V~Q~~~lF~~TI~eNI~~g~~~~~~e~i~~al~~a~l~~~i~~lp~GldT 462 (529)
T TIGR02868 383 GLLDPLQGEVTLDGVSVSSLQDELRRRISVFAQDAHLFDTTVRDNLRLGRPDATDEELWAALERVGLADWLRSLPDGLDT 462 (529)
T ss_pred cCCCCCCcEEEECCEEhhhHHHHHHhheEEEccCcccccccHHHHHhccCCCCCHHHHHHHHHHcCCHHHHHhCcccccc
Confidence 99999999999999 5999999999999999999999865 4678899999999999999999999999
Q ss_pred ccCCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHHhhcC
Q psy1503 206 VVGERGASLSGGQKARINLARAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGCLTSG 264 (265)
Q Consensus 206 ~vg~~g~~LSgGqrqRialARal~~~~~illLDEp~s~LD~~~~~~i~~~~i~~~l~~~ 264 (265)
.+||+|.+|||||||||+||||++++|+|+|||||||+||+++++.|.+.+ ..+.+++
T Consensus 463 ~ige~G~~LSGGQrQRiaiARall~~~~iliLDE~TSaLD~~te~~I~~~l-~~~~~~~ 520 (529)
T TIGR02868 463 VLGEGGARLSGGERQRLALARALLADAPILLLDEPTEHLDAGTESELLEDL-LAALSGK 520 (529)
T ss_pred hhccccCcCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHH-HHhcCCC
Confidence 999999999999999999999999999999999999999999999996654 4454444
No 6
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=100.00 E-value=3.3e-54 Score=422.23 Aligned_cols=199 Identities=25% Similarity=0.404 Sum_probs=173.8
Q ss_pred HHHHHHHhcCCCCCCcCC-CCCCCCCCcEEEEeEEEEeCCCCCCcceeeceEEEcCCcEEEEEcCCCChHHHHHHHHhcC
Q psy1503 62 DRVLNFLLLGEHEPRKIN-SVHSNGKGHVSLDNVTAQWSLQNADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNE 140 (265)
Q Consensus 62 ~ri~~~l~~~~~~~~~~~-~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~g~ 140 (265)
+|+.++++.++.++.... ..+....+.|+++||+|.|.. ++++|+|+||+|++|+++||+||||||||||+++|+|+
T Consensus 322 ~ri~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~vsf~~~~--~~~vL~~i~l~i~~G~~vaIvG~SGsGKSTL~~lL~g~ 399 (588)
T PRK11174 322 ESLVTFLETPLAHPQQGEKELASNDPVTIEAEDLEILSPD--GKTLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGF 399 (588)
T ss_pred HHHHHHHcCCCcccCCCccccCCCCCceEEEEeeEEeccC--CCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 999999987643221111 111112346999999987753 35799999999999999999999999999999999999
Q ss_pred cCCCccEEEEcCe-------------EEEEecCCCCccccHHHHHhcCCc-ccHHHHHHHHHHhcchhHHhcCCCCCccc
Q psy1503 141 LRISSGKVSLGGT-------------VSYASQEPWIFAATIRQNILFGLP-YLRRRYADVIRVCALQDDFDSLPNGDFTV 206 (265)
Q Consensus 141 ~~~~~G~i~~~g~-------------i~~v~Q~~~l~~~ti~eni~~~~~-~~~~~~~~~~~~~~l~~~i~~l~~g~~t~ 206 (265)
+ |++|+|.++|. |+||||+|++|++||+|||.++.+ .++++++++++.|++++++..+|+|++|.
T Consensus 400 ~-p~~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~LF~~TI~eNI~~g~~~~~~eei~~al~~a~l~~~i~~lp~G~dT~ 478 (588)
T PRK11174 400 L-PYQGSLKINGIELRELDPESWRKHLSWVGQNPQLPHGTLRDNVLLGNPDASDEQLQQALENAWVSEFLPLLPQGLDTP 478 (588)
T ss_pred C-CCCcEEEECCEecccCCHHHHHhheEEecCCCcCCCcCHHHHhhcCCCCCCHHHHHHHHHHhCHHHHHHhcccccccc
Confidence 9 99999999993 999999999999999999999964 67889999999999999999999999999
Q ss_pred cCCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHHhhcC
Q psy1503 207 VGERGASLSGGQKARINLARAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGCLTSG 264 (265)
Q Consensus 207 vg~~g~~LSgGqrqRialARal~~~~~illLDEp~s~LD~~~~~~i~~~~i~~~l~~~ 264 (265)
+||+|.+|||||||||+||||++++|+|+|||||||+||++++++|.+ ++..+.+++
T Consensus 479 vge~G~~LSGGQrQRialARAll~~~~IliLDE~TSaLD~~te~~i~~-~l~~~~~~~ 535 (588)
T PRK11174 479 IGDQAAGLSVGQAQRLALARALLQPCQLLLLDEPTASLDAHSEQLVMQ-ALNAASRRQ 535 (588)
T ss_pred cccCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHH-HHHHHhCCC
Confidence 999999999999999999999999999999999999999999999975 667766655
No 7
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=100.00 E-value=2.5e-53 Score=419.70 Aligned_cols=195 Identities=29% Similarity=0.499 Sum_probs=175.4
Q ss_pred HHHHHHHhcCCCCCCcC-CCCCCCCCCcEEEEeEEEEeCCCCCCcceeeceEEEcCCcEEEEEcCCCChHHHHHHHHhcC
Q psy1503 62 DRVLNFLLLGEHEPRKI-NSVHSNGKGHVSLDNVTAQWSLQNADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNE 140 (265)
Q Consensus 62 ~ri~~~l~~~~~~~~~~-~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~g~ 140 (265)
+|+.++++.+++++.+. ......-.+.|+++|++|+|+.. ++++|+|+||+|++||++||||+||||||||+|+|+|+
T Consensus 444 ~rL~dil~~~~E~~~~~~~~~~~~~~g~I~~~nvsf~y~~~-~~~vL~~isL~I~~Ge~vaIvG~SGsGKSTL~KLL~gl 522 (709)
T COG2274 444 ERLGDILDTPPEQEGDKTLIHLPKLQGEIEFENVSFRYGPD-DPPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGL 522 (709)
T ss_pred HHHHHHhcCCcccccccccccccccCceEEEEEEEEEeCCC-CcchhhceeEEeCCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 99999998876433222 12223345789999999999764 35799999999999999999999999999999999999
Q ss_pred cCCCccEEEEcCe-------------EEEEecCCCCccccHHHHHhcCCcc-cHHHHHHHHHHhcchhHHhcCCCCCccc
Q psy1503 141 LRISSGKVSLGGT-------------VSYASQEPWIFAATIRQNILFGLPY-LRRRYADVIRVCALQDDFDSLPNGDFTV 206 (265)
Q Consensus 141 ~~~~~G~i~~~g~-------------i~~v~Q~~~l~~~ti~eni~~~~~~-~~~~~~~~~~~~~l~~~i~~l~~g~~t~ 206 (265)
|+|++|+|.+||. |+||+|++.+|++||+|||.++.+. +.+++.++++.+++++++..+|.||+|.
T Consensus 523 y~p~~G~I~~dg~dl~~i~~~~lR~~ig~V~Q~~~Lf~gSI~eNi~l~~p~~~~e~i~~A~~~ag~~~fI~~lP~gy~t~ 602 (709)
T COG2274 523 YKPQQGRILLDGVDLNDIDLASLRRQVGYVLQDPFLFSGSIRENIALGNPEATDEEIIEAAQLAGAHEFIENLPMGYDTP 602 (709)
T ss_pred CCCCCceEEECCEeHHhcCHHHHHhheeEEcccchhhcCcHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhcccccccc
Confidence 9999999999994 9999999999999999999999875 4578889999999999999999999999
Q ss_pred cCCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHH
Q psy1503 207 VGERGASLSGGQKARINLARAVYKNADIYLLDDPLSAVDMHVGKHLFEDCI 257 (265)
Q Consensus 207 vg~~g~~LSgGqrqRialARal~~~~~illLDEp~s~LD~~~~~~i~~~~i 257 (265)
+||+|.+||||||||++||||++++|+|+||||||||||+++++.|.++..
T Consensus 603 v~E~G~~LSGGQrQrlalARaLl~~P~ILlLDEaTSaLD~~sE~~I~~~L~ 653 (709)
T COG2274 603 VGEGGANLSGGQRQRLALARALLSKPKILLLDEATSALDPETEAIILQNLL 653 (709)
T ss_pred cccCCCCCCHHHHHHHHHHHHhccCCCEEEEeCcccccCHhHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999987653
No 8
>KOG0055|consensus
Probab=100.00 E-value=1.3e-53 Score=431.00 Aligned_cols=202 Identities=29% Similarity=0.491 Sum_probs=181.3
Q ss_pred HHHHHHHhcCC-CCCCc-CCCCCCCCCCcEEEEeEEEEeCCCCCCcceeeceEEEcCCcEEEEEcCCCChHHHHHHHHhc
Q psy1503 62 DRVLNFLLLGE-HEPRK-INSVHSNGKGHVSLDNVTAQWSLQNADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILN 139 (265)
Q Consensus 62 ~ri~~~l~~~~-~~~~~-~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~g 139 (265)
.+++++++.++ .++.. .....+...+.|+++||+|+||..++.++|+|+||+|++|+.+||||||||||||++.+|.+
T Consensus 959 ~~iF~i~dr~~~i~~~~~~~~~~~~~~G~I~~~~V~F~YPsRP~~~Il~~l~l~i~~GqTvALVG~SGsGKSTvI~LLeR 1038 (1228)
T KOG0055|consen 959 GSIFEILDRKPTIDPDSTSGGKLPNVKGDIEFRNVSFAYPTRPDVPVLNNLSLSIRAGQTVALVGPSGSGKSTVISLLER 1038 (1228)
T ss_pred HHHHHHhcCCCCCCCCCCCCCccccceeEEEEeeeEeeCCCCCCchhhcCCcEEecCCCEEEEECCCCCCHHHHHHHHHH
Confidence 88999998765 32221 11112334678999999999998888899999999999999999999999999999999999
Q ss_pred CcCCCccEEEEcCe-------------EEEEecCCCCccccHHHHHhcCC-cccHHHHHHHHHHhcchhHHhcCCCCCcc
Q psy1503 140 ELRISSGKVSLGGT-------------VSYASQEPWIFAATIRQNILFGL-PYLRRRYADVIRVCALQDDFDSLPNGDFT 205 (265)
Q Consensus 140 ~~~~~~G~i~~~g~-------------i~~v~Q~~~l~~~ti~eni~~~~-~~~~~~~~~~~~~~~l~~~i~~l~~g~~t 205 (265)
+|+|++|.|.+||. +|.|+|+|.||++||||||+||. ..+.+++.++++.++.+++|..||+||||
T Consensus 1039 fYdp~~G~V~IDg~dik~lnl~~LR~~i~lVsQEP~LF~~TIrENI~YG~~~vs~~eIi~Aak~ANaH~FI~sLP~GyDT 1118 (1228)
T KOG0055|consen 1039 FYDPDAGKVKIDGVDIKDLNLKWLRKQIGLVSQEPVLFNGTIRENIAYGSEEVSEEEIIEAAKLANAHNFISSLPQGYDT 1118 (1228)
T ss_pred hcCCCCCeEEECCcccccCCHHHHHHhcceeccCchhhcccHHHHHhccCCCCCHHHHHHHHHHhhhHHHHhcCcCcccC
Confidence 99999999999994 99999999999999999999994 34788899999999999999999999999
Q ss_pred ccCCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHHhhcC
Q psy1503 206 VVGERGASLSGGQKARINLARAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGCLTSG 264 (265)
Q Consensus 206 ~vg~~g~~LSgGqrqRialARal~~~~~illLDEp~s~LD~~~~~~i~~~~i~~~l~~~ 264 (265)
.|||+|.+||||||||||||||+++||+||||||+|||||.++++-+ ++++++...++
T Consensus 1119 ~vGerG~QLSGGQKQRIAIARAilRnPkILLLDEATSALDseSErvV-QeALd~a~~gR 1176 (1228)
T KOG0055|consen 1119 RVGERGVQLSGGQKQRIAIARAILRNPKILLLDEATSALDSESERVV-QEALDRAMEGR 1176 (1228)
T ss_pred ccCcccCcCCchHHHHHHHHHHHHcCCCeeeeeccchhhhhhhHHHH-HHHHHHhhcCC
Confidence 99999999999999999999999999999999999999999998655 88998887765
No 9
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=100.00 E-value=1e-52 Score=446.61 Aligned_cols=263 Identities=39% Similarity=0.690 Sum_probs=226.8
Q ss_pred CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--cCCCCH-----------------
Q psy1503 1 MYAWEKPFTALVDQARKIEIGVVQKTSYLRGLYMTFNLFTTRMALFCTLTSFIFF--GGRLST----------------- 61 (265)
Q Consensus 1 ~~~we~~f~~~i~~~r~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~~----------------- 61 (265)
+|+||+.|.+++++.|++|++..++.+++..+....+...+.++.+++|+.|.+. ++.+++
T Consensus 511 ~~~~e~~~~~~i~~~r~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~l~~~~~f~~l~l~~~l~~pl 590 (1522)
T TIGR00957 511 LYAWELAFLDKVEGIRQEELKVLKKSAYLHAVGTFTWVCTPFLVALITFAVYVTVDENNILDAEKAFVSLALFNILRFPL 590 (1522)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCHHHHHHHHHHHHHHHHHH
Confidence 4899999999999999999999999999888877777777777777777666654 233432
Q ss_pred -----------------HHHHHHHhcCCCCCCcCC--CCCCCCCCcEEEEeEEEEeCCCCCCcceeeceEEEcCCcEEEE
Q psy1503 62 -----------------DRVLNFLLLGEHEPRKIN--SVHSNGKGHVSLDNVTAQWSLQNADLTLNAVSITFKPKQLACI 122 (265)
Q Consensus 62 -----------------~ri~~~l~~~~~~~~~~~--~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~i 122 (265)
+||.+|+..++.++.... .........++++|++|+|+.. .+++|+|+||+|++|++++|
T Consensus 591 ~~l~~~~~~~~~a~~s~~Ri~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~~~~l~~isl~i~~G~~v~I 669 (1522)
T TIGR00957 591 NILPMVISSIVQASVSLKRLRIFLSHEELEPDSIERRTIKPGEGNSITVHNATFTWARD-LPPTLNGITFSIPEGALVAV 669 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCcccccccccccccCCCCCCcEEEEEeEEEcCCC-CCceeeeeEEEEcCCCEEEE
Confidence 999999986643221110 0011112379999999999742 35799999999999999999
Q ss_pred EcCCCChHHHHHHHHhcCcCCCccEEEEcCeEEEEecCCCCccccHHHHHhcCCcccHHHHHHHHHHhcchhHHhcCCCC
Q psy1503 123 IGAIGAGKTSLLHIILNELRISSGKVSLGGTVSYASQEPWIFAATIRQNILFGLPYLRRRYADVIRVCALQDDFDSLPNG 202 (265)
Q Consensus 123 vG~~GsGKSTLl~~l~g~~~~~~G~i~~~g~i~~v~Q~~~l~~~ti~eni~~~~~~~~~~~~~~~~~~~l~~~i~~l~~g 202 (265)
+||||||||||+++|+|+++|++|+|.++|.++||+|+||+|++||+|||.||.+++++++++++++|++.+++..+|+|
T Consensus 670 vG~~GsGKSTLl~~l~g~~~~~~G~i~~~g~i~yv~Q~~~l~~~Ti~eNI~~g~~~~~~~~~~~~~~~~l~~~l~~~~~g 749 (1522)
T TIGR00957 670 VGQVGCGKSSLLSALLAEMDKVEGHVHMKGSVAYVPQQAWIQNDSLRENILFGKALNEKYYQQVLEACALLPDLEILPSG 749 (1522)
T ss_pred ECCCCCCHHHHHHHHhCCCccCCcEEEECCEEEEEcCCccccCCcHHHHhhcCCccCHHHHHHHHHHhCCHHHHHhcCCC
Confidence 99999999999999999999999999999999999999999999999999999888888899999999999999999999
Q ss_pred CccccCCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHH--HHHhhcC
Q psy1503 203 DFTVVGERGASLSGGQKARINLARAVYKNADIYLLDDPLSAVDMHVGKHLFEDCI--SGCLTSG 264 (265)
Q Consensus 203 ~~t~vg~~g~~LSgGqrqRialARal~~~~~illLDEp~s~LD~~~~~~i~~~~i--~~~l~~~ 264 (265)
++|.+|++|.+|||||||||+||||+|++|+|+|||||||+||+++++++++.++ .++++++
T Consensus 750 ~~t~ig~~g~~LSGGQkqRiaLARAl~~~~~illLDEp~saLD~~~~~~i~~~l~~~~~~~~~~ 813 (1522)
T TIGR00957 750 DRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFEHVIGPEGVLKNK 813 (1522)
T ss_pred CCceecCCCCCCCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHhhhhhhhcCC
Confidence 9999999999999999999999999999999999999999999999999999987 3566554
No 10
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=100.00 E-value=1.8e-52 Score=418.21 Aligned_cols=195 Identities=27% Similarity=0.385 Sum_probs=171.9
Q ss_pred HHHHHHHhcCCCCCCcC------CCCC-CCCCCcEEEEeEEEEeCCCCCCcceeeceEEEcCCcEEEEEcCCCChHHHHH
Q psy1503 62 DRVLNFLLLGEHEPRKI------NSVH-SNGKGHVSLDNVTAQWSLQNADLTLNAVSITFKPKQLACIIGAIGAGKTSLL 134 (265)
Q Consensus 62 ~ri~~~l~~~~~~~~~~------~~~~-~~~~~~i~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~ivG~~GsGKSTLl 134 (265)
+|+.++++.++..+... ...+ ....+.|+++|++|+|+.. .+++|+|+||+|++|+.++|+||||||||||+
T Consensus 444 ~ri~~il~~~~e~~~~~~~~~~~~~~~~~~~~~~I~~~~vsf~y~~~-~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLl 522 (710)
T TIGR03796 444 NRLDDVLRNPVDPLLEEEEAPAAGSEPSPRLSGYVELRNITFGYSPL-EPPLIENFSLTLQPGQRVALVGGSGSGKSTIA 522 (710)
T ss_pred HHHHHHHcCCCccccccccccccccccCCCCCCeEEEEEEEEecCCC-CCCcccceeEEEcCCCEEEEECCCCCCHHHHH
Confidence 99999997654322111 0111 1123579999999999753 35799999999999999999999999999999
Q ss_pred HHHhcCcCCCccEEEEcCe-------------EEEEecCCCCccccHHHHHhcCCc-ccHHHHHHHHHHhcchhHHhcCC
Q psy1503 135 HIILNELRISSGKVSLGGT-------------VSYASQEPWIFAATIRQNILFGLP-YLRRRYADVIRVCALQDDFDSLP 200 (265)
Q Consensus 135 ~~l~g~~~~~~G~i~~~g~-------------i~~v~Q~~~l~~~ti~eni~~~~~-~~~~~~~~~~~~~~l~~~i~~l~ 200 (265)
++|+|+++|++|+|.+||. ++||||+|++|++||+|||.++.+ .+++++.++++.+++++++..+|
T Consensus 523 klL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~gTi~eNi~l~~~~~~~~~i~~al~~~~l~~~i~~lp 602 (710)
T TIGR03796 523 KLVAGLYQPWSGEILFDGIPREEIPREVLANSVAMVDQDIFLFEGTVRDNLTLWDPTIPDADLVRACKDAAIHDVITSRP 602 (710)
T ss_pred HHHhcCCCCCCcEEEECCEeHHHCCHHHHHhheeEEecCChhhhccHHHHhhCCCCCCCHHHHHHHHHHhCCHHHHHhCc
Confidence 9999999999999999983 999999999999999999998754 56788999999999999999999
Q ss_pred CCCccccCCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHH
Q psy1503 201 NGDFTVVGERGASLSGGQKARINLARAVYKNADIYLLDDPLSAVDMHVGKHLFEDCI 257 (265)
Q Consensus 201 ~g~~t~vg~~g~~LSgGqrqRialARal~~~~~illLDEp~s~LD~~~~~~i~~~~i 257 (265)
+|++|.+||+|.+|||||||||+||||++++|+|+|||||||+||.+++++|++...
T Consensus 603 ~gl~t~i~e~G~~LSGGQrQRiaLARall~~p~iliLDEptS~LD~~te~~i~~~l~ 659 (710)
T TIGR03796 603 GGYDAELAEGGANLSGGQRQRLEIARALVRNPSILILDEATSALDPETEKIIDDNLR 659 (710)
T ss_pred CcccceeccCCCCCCHHHHHHHHHHHHHhhCCCEEEEECccccCCHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999987653
No 11
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=100.00 E-value=3.6e-52 Score=414.61 Aligned_cols=193 Identities=28% Similarity=0.419 Sum_probs=171.9
Q ss_pred HHHHHHHhcCCCCCCcCCCCCCCCCCcEEEEeEEEEeCCCCCCcceeeceEEEcCCcEEEEEcCCCChHHHHHHHHhcCc
Q psy1503 62 DRVLNFLLLGEHEPRKINSVHSNGKGHVSLDNVTAQWSLQNADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNEL 141 (265)
Q Consensus 62 ~ri~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~g~~ 141 (265)
+|+.++++.++..+... ..+....+.|+++||+|+|++. .+++|+|+||+|++||.+||+|+||||||||+++|+|++
T Consensus 426 ~ri~~~l~~~~e~~~~~-~~~~~~~~~I~~~nvsf~Y~~~-~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~ 503 (686)
T TIGR03797 426 ERAKPILEALPEVDEAK-TDPGKLSGAIEVDRVTFRYRPD-GPLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFE 503 (686)
T ss_pred HHHHHHhcCCcccccCc-CCCCCCCceEEEEEEEEEcCCC-CccceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 89999987654322111 1111223579999999999643 367999999999999999999999999999999999999
Q ss_pred CCCccEEEEcCe-------------EEEEecCCCCccccHHHHHhcCCcccHHHHHHHHHHhcchhHHhcCCCCCccccC
Q psy1503 142 RISSGKVSLGGT-------------VSYASQEPWIFAATIRQNILFGLPYLRRRYADVIRVCALQDDFDSLPNGDFTVVG 208 (265)
Q Consensus 142 ~~~~G~i~~~g~-------------i~~v~Q~~~l~~~ti~eni~~~~~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~vg 208 (265)
+|++|+|.+||. ++||||+|++|++||+|||.++.+.++++++++++.+++++++..+|+|++|.+|
T Consensus 504 ~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~gTI~eNi~~~~~~~~e~i~~al~~a~l~~~i~~lp~G~dt~ig 583 (686)
T TIGR03797 504 TPESGSVFYDGQDLAGLDVQAVRRQLGVVLQNGRLMSGSIFENIAGGAPLTLDEAWEAARMAGLAEDIRAMPMGMHTVIS 583 (686)
T ss_pred CCCCCEEEECCEEcCcCCHHHHHhccEEEccCCccCcccHHHHHhcCCCCCHHHHHHHHHHcCcHHHHHhcccccccccc
Confidence 999999999983 9999999999999999999999777788899999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHH
Q psy1503 209 ERGASLSGGQKARINLARAVYKNADIYLLDDPLSAVDMHVGKHLFEDC 256 (265)
Q Consensus 209 ~~g~~LSgGqrqRialARal~~~~~illLDEp~s~LD~~~~~~i~~~~ 256 (265)
++|.+|||||||||+||||++++|+|+|||||||+||++++++|.+..
T Consensus 584 e~G~~LSGGQrQRialARAll~~p~iLiLDEpTS~LD~~te~~i~~~L 631 (686)
T TIGR03797 584 EGGGTLSGGQRQRLLIARALVRKPRILLFDEATSALDNRTQAIVSESL 631 (686)
T ss_pred CCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999997653
No 12
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=100.00 E-value=2.8e-52 Score=416.76 Aligned_cols=193 Identities=28% Similarity=0.481 Sum_probs=171.1
Q ss_pred HHHHHHHhcCCCCCCcCCCCCCCCCCcEEEEeEEEEeCCCCCCcceeeceEEEcCCcEEEEEcCCCChHHHHHHHHhcCc
Q psy1503 62 DRVLNFLLLGEHEPRKINSVHSNGKGHVSLDNVTAQWSLQNADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNEL 141 (265)
Q Consensus 62 ~ri~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~g~~ 141 (265)
+|+.++++.++..+......+.+..+.|+++||+|+|++..++++|+|+||+|++||+++||||||||||||+++|+|++
T Consensus 452 ~ri~~~l~~~~~~~~~~~~~~~~~~~~I~~~nVsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~ 531 (711)
T TIGR00958 452 EKVFEYLDRKPNIPLTGTLAPLNLEGLIEFQDVSFSYPNRPDVPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLY 531 (711)
T ss_pred HHHHHHhCCCCCCCCCCCCCCCCCCCeEEEEEEEEECCCCCCCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHHhcc
Confidence 99999997654322111111222345799999999997543467999999999999999999999999999999999999
Q ss_pred CCCccEEEEcCe-------------EEEEecCCCCccccHHHHHhcCCc-ccHHHHHHHHHHhcchhHHhcCCCCCcccc
Q psy1503 142 RISSGKVSLGGT-------------VSYASQEPWIFAATIRQNILFGLP-YLRRRYADVIRVCALQDDFDSLPNGDFTVV 207 (265)
Q Consensus 142 ~~~~G~i~~~g~-------------i~~v~Q~~~l~~~ti~eni~~~~~-~~~~~~~~~~~~~~l~~~i~~l~~g~~t~v 207 (265)
+|++|+|.+||. |+||+|+|++|++||+|||.++.+ .+++++.++++.++++++++++|+|++|.+
T Consensus 532 ~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lF~gTIreNI~~g~~~~~~e~i~~al~~a~l~~~i~~lp~GldT~i 611 (711)
T TIGR00958 532 QPTGGQVLLDGVPLVQYDHHYLHRQVALVGQEPVLFSGSVRENIAYGLTDTPDEEIMAAAKAANAHDFIMEFPNGYDTEV 611 (711)
T ss_pred CCCCCEEEECCEEHHhcCHHHHHhhceEEecCccccccCHHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCCCccCCcc
Confidence 999999999983 999999999999999999999864 457788999999999999999999999999
Q ss_pred CCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHH
Q psy1503 208 GERGASLSGGQKARINLARAVYKNADIYLLDDPLSAVDMHVGKHLFE 254 (265)
Q Consensus 208 g~~g~~LSgGqrqRialARal~~~~~illLDEp~s~LD~~~~~~i~~ 254 (265)
|++|.+|||||||||+||||++++|+|+|||||||+||+++++.|.+
T Consensus 612 ge~G~~LSGGQkQRlalARALl~~p~ILILDEpTSaLD~~te~~i~~ 658 (711)
T TIGR00958 612 GEKGSQLSGGQKQRIAIARALVRKPRVLILDEATSALDAECEQLLQE 658 (711)
T ss_pred cCCCCcCCHHHHHHHHHHHHHhcCCCEEEEEccccccCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999877
No 13
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=100.00 E-value=5.7e-52 Score=413.64 Aligned_cols=201 Identities=30% Similarity=0.496 Sum_probs=175.4
Q ss_pred HHHHHHHhcCCCCCCcCC-CCCCCCCCcEEEEeEEEEeCCCCCCcceeeceEEEcCCcEEEEEcCCCChHHHHHHHHhcC
Q psy1503 62 DRVLNFLLLGEHEPRKIN-SVHSNGKGHVSLDNVTAQWSLQNADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNE 140 (265)
Q Consensus 62 ~ri~~~l~~~~~~~~~~~-~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~g~ 140 (265)
+|+.++++.++..+.... .......+.|+++|++|+|++. .+++|+|+||+|++|+.+||+|+||||||||+++|+|+
T Consensus 436 ~ri~~il~~~~e~~~~~~~~~~~~~~~~I~~~~vsf~Y~~~-~~~vL~~i~l~i~~G~~iaIvG~sGsGKSTLlklL~gl 514 (694)
T TIGR03375 436 QSLDELMQLPVERPEGTRFLHRPRLQGEIEFRNVSFAYPGQ-ETPALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGL 514 (694)
T ss_pred HHHHHHHcCCCCCCCCCCCCCCCCccceEEEEEEEEEeCCC-CccceeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 999999987653221111 1111123579999999999743 45799999999999999999999999999999999999
Q ss_pred cCCCccEEEEcCe-------------EEEEecCCCCccccHHHHHhcCCc-ccHHHHHHHHHHhcchhHHhcCCCCCccc
Q psy1503 141 LRISSGKVSLGGT-------------VSYASQEPWIFAATIRQNILFGLP-YLRRRYADVIRVCALQDDFDSLPNGDFTV 206 (265)
Q Consensus 141 ~~~~~G~i~~~g~-------------i~~v~Q~~~l~~~ti~eni~~~~~-~~~~~~~~~~~~~~l~~~i~~l~~g~~t~ 206 (265)
++|++|+|.+||. ++||+|++++|++||+|||.++.+ .+++++.++++.+++++++..+|+|++|.
T Consensus 515 ~~p~~G~I~idg~~l~~~~~~~lr~~i~~v~Q~~~lf~~TI~eNi~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~T~ 594 (694)
T TIGR03375 515 YQPTEGSVLLDGVDIRQIDPADLRRNIGYVPQDPRLFYGTLRDNIALGAPYADDEEILRAAELAGVTEFVRRHPDGLDMQ 594 (694)
T ss_pred CCCCCceEEECCEEhhhCCHHHHHhccEEECCChhhhhhhHHHHHhCCCCCCCHHHHHHHHHHcChHHHHHhCcccccce
Confidence 9999999999983 999999999999999999999975 57888999999999999999999999999
Q ss_pred cCCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHHhhcC
Q psy1503 207 VGERGASLSGGQKARINLARAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGCLTSG 264 (265)
Q Consensus 207 vg~~g~~LSgGqrqRialARal~~~~~illLDEp~s~LD~~~~~~i~~~~i~~~l~~~ 264 (265)
+|++|.+||||||||++||||++++|+++|||||||+||++++++|.+ .+..+.+++
T Consensus 595 i~e~G~~LSgGQrQRlalARall~~p~iliLDE~Ts~LD~~te~~i~~-~l~~~~~~~ 651 (694)
T TIGR03375 595 IGERGRSLSGGQRQAVALARALLRDPPILLLDEPTSAMDNRSEERFKD-RLKRWLAGK 651 (694)
T ss_pred ecCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHH-HHHHHhCCC
Confidence 999999999999999999999999999999999999999999999865 455555543
No 14
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=100.00 E-value=2.5e-52 Score=442.64 Aligned_cols=259 Identities=36% Similarity=0.674 Sum_probs=224.9
Q ss_pred CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCH-------------------
Q psy1503 1 MYAWEKPFTALVDQARKIEIGVVQKTSYLRGLYMTFNLFTTRMALFCTLTSFIFFGGRLST------------------- 61 (265)
Q Consensus 1 ~~~we~~f~~~i~~~r~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~------------------- 61 (265)
+|+||+.|.+++++.|++|++.+++..++..+...++.+.+.++.+++|+.|.+.++ +++
T Consensus 275 ~~~~E~~~~~~i~~~R~~El~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~y~~~~~-~~~~~~ft~lal~~lL~~~l~~ 353 (1490)
T TIGR01271 275 AYCWEEAMEKIIKNIRQDELKLTRKIAYLRYFYSSAFFFSGFFVVFLSVVPYALIKG-IILRRIFTTISYCIVLRMTVTR 353 (1490)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHHHHHHHH
Confidence 589999999999999999999999999888777777777777777777766654321 111
Q ss_pred ----------------HHHHHHHhcCCCCCCcCCCCCCCCCCcEEEEeEEEEeCCC------------------------
Q psy1503 62 ----------------DRVLNFLLLGEHEPRKINSVHSNGKGHVSLDNVTAQWSLQ------------------------ 101 (265)
Q Consensus 62 ----------------~ri~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~------------------------ 101 (265)
+||++||..++.+.... . .....++++|++|.|+..
T Consensus 354 ~lp~~~~~~~~a~~s~~RI~~fL~~~e~~~~~~--~--~~~~~i~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 429 (1490)
T TIGR01271 354 QFPGAIQTWYDSLGAITKIQDFLCKEEYKTLEY--N--LTTTEVEMVNVTASWDEGIGELFEKIKQNNKARKQPNGDDGL 429 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCcccccccc--c--CCCCceEEecceEecCCccccccccccccccccccccccccc
Confidence 99999998765432111 0 112358999999999531
Q ss_pred -------CCCcceeeceEEEcCCcEEEEEcCCCChHHHHHHHHhcCcCCCccEEEEcCeEEEEecCCCCccccHHHHHhc
Q psy1503 102 -------NADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSLGGTVSYASQEPWIFAATIRQNILF 174 (265)
Q Consensus 102 -------~~~~~l~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g~i~~v~Q~~~l~~~ti~eni~~ 174 (265)
..+++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.++||+|+||+|++||+|||.|
T Consensus 430 ~~~~~s~~~~~~l~~i~l~i~~G~~~~I~G~~GsGKSTLl~~l~G~~~~~~G~i~~~g~iayv~Q~~~l~~~Ti~eNI~~ 509 (1490)
T TIGR01271 430 FFSNFSLYVTPVLKNISFKLEKGQLLAVAGSTGSGKSSLLMMIMGELEPSEGKIKHSGRISFSPQTSWIMPGTIKDNIIF 509 (1490)
T ss_pred cccccccccCcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEEEEeCCCccCCccHHHHHHh
Confidence 0135899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcccHHHHHHHHHHhcchhHHhcCCCCCccccCCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHH
Q psy1503 175 GLPYLRRRYADVIRVCALQDDFDSLPNGDFTVVGERGASLSGGQKARINLARAVYKNADIYLLDDPLSAVDMHVGKHLFE 254 (265)
Q Consensus 175 ~~~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~vg~~g~~LSgGqrqRialARal~~~~~illLDEp~s~LD~~~~~~i~~ 254 (265)
|.+++.++|.+++++|++.+++..+|.|+.|.+|++|.+|||||||||+||||+|++|++||||||||+||++++++|++
T Consensus 510 g~~~~~~~~~~~~~~~~L~~~l~~l~~g~~t~vg~~g~~LSgGqkqRi~lARAl~~~~~illLDep~saLD~~~~~~i~~ 589 (1490)
T TIGR01271 510 GLSYDEYRYTSVIKACQLEEDIALFPEKDKTVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFTHLDVVTEKEIFE 589 (1490)
T ss_pred ccccchHHHHHHHHHHhHHHHHHhccccccccccCcCCCcCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHH
Confidence 98777788999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhcC
Q psy1503 255 DCISGCLTSG 264 (265)
Q Consensus 255 ~~i~~~l~~~ 264 (265)
.|+.++++++
T Consensus 590 ~~l~~~~~~~ 599 (1490)
T TIGR01271 590 SCLCKLMSNK 599 (1490)
T ss_pred HHHHHHhcCC
Confidence 9988877655
No 15
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=100.00 E-value=3.2e-51 Score=399.77 Aligned_cols=199 Identities=28% Similarity=0.510 Sum_probs=174.6
Q ss_pred HHHHHHHhcCCCCCCcCCCCCCCCCCcEEEEeEEEEeCCCCCCcceeeceEEEcCCcEEEEEcCCCChHHHHHHHHhcCc
Q psy1503 62 DRVLNFLLLGEHEPRKINSVHSNGKGHVSLDNVTAQWSLQNADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNEL 141 (265)
Q Consensus 62 ~ri~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~g~~ 141 (265)
+|+.++++.++...... .......+.|+++|++|+|++ ++++|+|+||++++||.+|||||||||||||+++|+|++
T Consensus 303 ~ri~~~l~~~~~~~~~~-~~~~~~~~~I~f~~vsf~y~~--~~~vl~~is~~i~~Ge~vaiVG~sGsGKSTl~~LL~r~~ 379 (567)
T COG1132 303 ERLFELLDEEPEVEDPP-DPLKDTIGSIEFENVSFSYPG--KKPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLY 379 (567)
T ss_pred HHHHHHHcCCccccCCC-CCCCCCCCeEEEEEEEEEcCC--CCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHhccC
Confidence 99999998754211111 111123356999999999974 357999999999999999999999999999999999999
Q ss_pred CCCccEEEEcCe-------------EEEEecCCCCccccHHHHHhcCCc-ccHHHHHHHHHHhcchhHHhcCCCCCcccc
Q psy1503 142 RISSGKVSLGGT-------------VSYASQEPWIFAATIRQNILFGLP-YLRRRYADVIRVCALQDDFDSLPNGDFTVV 207 (265)
Q Consensus 142 ~~~~G~i~~~g~-------------i~~v~Q~~~l~~~ti~eni~~~~~-~~~~~~~~~~~~~~l~~~i~~l~~g~~t~v 207 (265)
+|++|+|.+||. |+||||+++||++||+|||.+|.+ .+++++.++++.+++++++..+|+|++|.+
T Consensus 380 ~~~~G~I~idg~dI~~i~~~~lr~~I~~V~Qd~~LF~~TI~~NI~~g~~~at~eei~~a~k~a~~~d~I~~lp~g~dt~v 459 (567)
T COG1132 380 DPTSGEILIDGIDIRDISLDSLRKRIGIVSQDPLLFSGTIRENIALGRPDATDEEIEEALKLANAHEFIANLPDGYDTIV 459 (567)
T ss_pred CCCCCeEEECCEehhhcCHHHHHHhccEEcccceeecccHHHHHhcCCCCCCHHHHHHHHHHhChHHHHHhCccccccee
Confidence 999999999984 999999999999999999999987 477889999999999999999999999999
Q ss_pred CCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHHhhcC
Q psy1503 208 GERGASLSGGQKARINLARAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGCLTSG 264 (265)
Q Consensus 208 g~~g~~LSgGqrqRialARal~~~~~illLDEp~s~LD~~~~~~i~~~~i~~~l~~~ 264 (265)
||+|.+||||||||++||||++++|+|+|||||||+||+.+++.|.+ .+..+.++|
T Consensus 460 ge~G~~LSgGQrQrlaiARall~~~~ILILDEaTSalD~~tE~~I~~-~l~~l~~~r 515 (567)
T COG1132 460 GERGVNLSGGQRQRLAIARALLRNPPILILDEATSALDTETEALIQD-ALKKLLKGR 515 (567)
T ss_pred cCCCccCCHHHHHHHHHHHHHhcCCCEEEEeccccccCHHhHHHHHH-HHHHHhcCC
Confidence 99999999999999999999999999999999999999999999855 444555554
No 16
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=100.00 E-value=3.8e-51 Score=408.49 Aligned_cols=194 Identities=28% Similarity=0.506 Sum_probs=170.6
Q ss_pred HHHHHHHhcCCCCCCcCC-CCCCCCCCcEEEEeEEEEeCCCCCCcceeeceEEEcCCcEEEEEcCCCChHHHHHHHHhcC
Q psy1503 62 DRVLNFLLLGEHEPRKIN-SVHSNGKGHVSLDNVTAQWSLQNADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNE 140 (265)
Q Consensus 62 ~ri~~~l~~~~~~~~~~~-~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~g~ 140 (265)
+|+.++++.++..+.... .......+.|+++|++|+|+. .+++|+|+||+|++|+.+||+||||||||||+++|+|+
T Consensus 446 ~ri~~~l~~~~e~~~~~~~~~~~~~~~~I~~~~vsf~y~~--~~~iL~~isl~i~~G~~vaIvG~SGsGKSTLlklL~gl 523 (708)
T TIGR01193 446 NRLNEVYLVDSEFINKKKRTELNNLNGDIVINDVSYSYGY--GSNILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGF 523 (708)
T ss_pred HHHHHHHcCCCcccccccccCCCCCCCcEEEEEEEEEcCC--CCcceeceeEEECCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 899999876543221111 111122457999999999963 35799999999999999999999999999999999999
Q ss_pred cCCCccEEEEcCe-------------EEEEecCCCCccccHHHHHhcCC--cccHHHHHHHHHHhcchhHHhcCCCCCcc
Q psy1503 141 LRISSGKVSLGGT-------------VSYASQEPWIFAATIRQNILFGL--PYLRRRYADVIRVCALQDDFDSLPNGDFT 205 (265)
Q Consensus 141 ~~~~~G~i~~~g~-------------i~~v~Q~~~l~~~ti~eni~~~~--~~~~~~~~~~~~~~~l~~~i~~l~~g~~t 205 (265)
++|++|+|.+||. ++||||+|++|++||+|||.++. ..+++++.++++.+++++++..+|+|++|
T Consensus 524 ~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~gTI~eNi~l~~~~~~~~~~i~~a~~~a~l~~~i~~lp~gldt 603 (708)
T TIGR01193 524 FQARSGEILLNGFSLKDIDRHTLRQFINYLPQEPYIFSGSILENLLLGAKENVSQDEIWAACEIAEIKDDIENMPLGYQT 603 (708)
T ss_pred CCCCCcEEEECCEEHHHcCHHHHHHheEEEecCceehhHHHHHHHhccCCCCCCHHHHHHHHHHhCCHHHHHhcccccCc
Confidence 9999999999983 99999999999999999999983 35678889999999999999999999999
Q ss_pred ccCCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHH
Q psy1503 206 VVGERGASLSGGQKARINLARAVYKNADIYLLDDPLSAVDMHVGKHLFEDCI 257 (265)
Q Consensus 206 ~vg~~g~~LSgGqrqRialARal~~~~~illLDEp~s~LD~~~~~~i~~~~i 257 (265)
.+|++|.+|||||||||+||||++++|+|+|||||||+||+++++++.+...
T Consensus 604 ~i~e~G~~LSgGQrQRialARall~~p~iliLDE~Ts~LD~~te~~i~~~L~ 655 (708)
T TIGR01193 604 ELSEEGSSISGGQKQRIALARALLTDSKVLILDESTSNLDTITEKKIVNNLL 655 (708)
T ss_pred EecCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999876553
No 17
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=100.00 E-value=4.5e-51 Score=399.53 Aligned_cols=196 Identities=26% Similarity=0.429 Sum_probs=171.1
Q ss_pred HHHHHHHhcCCCCCCcCCCCCCCCCCcEEEEeEEEEeCCCCCCcceeeceEEEcCCcEEEEEcCCCChHHHHHHHHhcCc
Q psy1503 62 DRVLNFLLLGEHEPRKINSVHSNGKGHVSLDNVTAQWSLQNADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNEL 141 (265)
Q Consensus 62 ~ri~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~g~~ 141 (265)
+|+.++++.++..+..... .....+.|+++|++|+|++. .+++|+|+||+|++|+.++|+|+||||||||+++|+|++
T Consensus 316 ~ri~~~~~~~~~~~~~~~~-~~~~~~~i~~~~vsf~y~~~-~~~il~~i~l~i~~G~~~aIvG~sGsGKSTLl~ll~gl~ 393 (582)
T PRK11176 316 QTLFAILDLEQEKDEGKRV-IERAKGDIEFRNVTFTYPGK-EVPALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFY 393 (582)
T ss_pred HHHHHHhcCCCcCCCCCcC-CCCCCCeEEEEEEEEecCCC-CCccccCceEEeCCCCEEEEECCCCCCHHHHHHHHHhcc
Confidence 8888888765432211111 11123469999999999743 357999999999999999999999999999999999999
Q ss_pred CCCccEEEEcCe-------------EEEEecCCCCccccHHHHHhcCCc--ccHHHHHHHHHHhcchhHHhcCCCCCccc
Q psy1503 142 RISSGKVSLGGT-------------VSYASQEPWIFAATIRQNILFGLP--YLRRRYADVIRVCALQDDFDSLPNGDFTV 206 (265)
Q Consensus 142 ~~~~G~i~~~g~-------------i~~v~Q~~~l~~~ti~eni~~~~~--~~~~~~~~~~~~~~l~~~i~~l~~g~~t~ 206 (265)
+|++|+|.++|. ++|+||++++|++|++|||.++.+ .++++++++++.+++++++..+|+|++|.
T Consensus 394 ~p~~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~i~~al~~~~l~~~i~~lp~Gldt~ 473 (582)
T PRK11176 394 DIDEGEILLDGHDLRDYTLASLRNQVALVSQNVHLFNDTIANNIAYARTEQYSREQIEEAARMAYAMDFINKMDNGLDTV 473 (582)
T ss_pred CCCCceEEECCEEhhhcCHHHHHhhceEEccCceeecchHHHHHhcCCCCCCCHHHHHHHHHHhCcHHHHHhcccccCce
Confidence 999999999984 899999999999999999999853 57788999999999999999999999999
Q ss_pred cCCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHH
Q psy1503 207 VGERGASLSGGQKARINLARAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGC 260 (265)
Q Consensus 207 vg~~g~~LSgGqrqRialARal~~~~~illLDEp~s~LD~~~~~~i~~~~i~~~ 260 (265)
+|++|.+|||||||||+||||++++|+|+|||||||+||+.++..+++.. ..+
T Consensus 474 ig~~g~~LSGGqrQRi~LARall~~~~ililDEptsaLD~~t~~~i~~~l-~~~ 526 (582)
T PRK11176 474 IGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAAL-DEL 526 (582)
T ss_pred eCCCCCcCCHHHHHHHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHHH-HHH
Confidence 99999999999999999999999999999999999999999999986544 444
No 18
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=100.00 E-value=1.4e-50 Score=392.04 Aligned_cols=199 Identities=27% Similarity=0.456 Sum_probs=171.8
Q ss_pred HHHHHHHhcCCCCCCcCCCCCCCCCCcEEEEeEEEEeCCCCCCcceeeceEEEcCCcEEEEEcCCCChHHHHHHHHhcCc
Q psy1503 62 DRVLNFLLLGEHEPRKINSVHSNGKGHVSLDNVTAQWSLQNADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNEL 141 (265)
Q Consensus 62 ~ri~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~g~~ 141 (265)
+|+.++++.++.+.... ..+....+.|+++|++|+|++. .+++|+|+||+|++|++++|+||||||||||+++|+|++
T Consensus 295 ~ri~~ll~~~~~~~~~~-~~~~~~~~~i~~~~v~f~y~~~-~~~il~~i~l~i~~G~~~~ivG~sGsGKSTL~~ll~g~~ 372 (529)
T TIGR02857 295 EALFAVLDAPRPLAGKA-PVTAAPAPSLEFSGLSVAYPGR-RAPALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFV 372 (529)
T ss_pred HHHHHHhCCCcccCCCc-CCCCCCCCeEEEEEEEEECCCC-CcccccceeEEECCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 89999987543211111 1111122469999999999753 357999999999999999999999999999999999999
Q ss_pred CCCccEEEEcCe-------------EEEEecCCCCccccHHHHHhcCCc-ccHHHHHHHHHHhcchhHHhcCCCCCcccc
Q psy1503 142 RISSGKVSLGGT-------------VSYASQEPWIFAATIRQNILFGLP-YLRRRYADVIRVCALQDDFDSLPNGDFTVV 207 (265)
Q Consensus 142 ~~~~G~i~~~g~-------------i~~v~Q~~~l~~~ti~eni~~~~~-~~~~~~~~~~~~~~l~~~i~~l~~g~~t~v 207 (265)
+|++|+|.++|. ++||+|+|++|++|++|||.++.+ .+++++.++++.++++++++.+|+|++|.+
T Consensus 373 ~~~~G~I~~~g~~i~~~~~~~lr~~i~~v~Q~~~lf~~ti~~Ni~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~Gldt~v 452 (529)
T TIGR02857 373 DPTEGSIAVNGVPLADADADSWRDQIAWVPQHPFLFAGTIAENIRLARPDASDAEIRRALERAGLDEFVAALPQGLDTLI 452 (529)
T ss_pred CCCCcEEEECCEehhhCCHHHHHhheEEEcCCCcccCcCHHHHHhccCCCCCHHHHHHHHHHcCcHHHHHhCcccccchh
Confidence 999999999984 999999999999999999999864 467788999999999999999999999999
Q ss_pred CCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHHhhc
Q psy1503 208 GERGASLSGGQKARINLARAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGCLTS 263 (265)
Q Consensus 208 g~~g~~LSgGqrqRialARal~~~~~illLDEp~s~LD~~~~~~i~~~~i~~~l~~ 263 (265)
|++|.+||||||||++||||++++|+++|||||||+||+++++++++ .+..+.++
T Consensus 453 ~e~g~~LSgGq~qri~laRal~~~~~ililDE~ts~lD~~~~~~i~~-~l~~~~~~ 507 (529)
T TIGR02857 453 GEGGAGLSGGQAQRLALARAFLRDAPLLLLDEPTAHLDAETEALVTE-ALRALAQG 507 (529)
T ss_pred ccccccCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHH-HHHHhcCC
Confidence 99999999999999999999999999999999999999999999865 44444443
No 19
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=100.00 E-value=1.5e-50 Score=394.82 Aligned_cols=200 Identities=28% Similarity=0.433 Sum_probs=173.6
Q ss_pred HHHHHHHhcCCCCCCcCCCCCCCCCCcEEEEeEEEEeCCCCCCcceeeceEEEcCCcEEEEEcCCCChHHHHHHHHhcCc
Q psy1503 62 DRVLNFLLLGEHEPRKINSVHSNGKGHVSLDNVTAQWSLQNADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNEL 141 (265)
Q Consensus 62 ~ri~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~g~~ 141 (265)
+|+.++++.++..+.... ......+.++++|++|+|++. ++++|+|+||+|++|++++|+|+||||||||+++|+|++
T Consensus 305 ~ri~~~l~~~~~~~~~~~-~~~~~~~~i~~~~v~f~y~~~-~~~il~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~ 382 (571)
T TIGR02203 305 ESLFTLLDSPPEKDTGTR-AIERARGDVEFRNVTFRYPGR-DRPALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFY 382 (571)
T ss_pred HHHHHHHcCCCCCCCCCC-CCCCCCCeEEEEEEEEEcCCC-CCccccCeeEEecCCCEEEEECCCCCCHHHHHHHHHhcc
Confidence 899999876543221111 111123469999999999753 457999999999999999999999999999999999999
Q ss_pred CCCccEEEEcCe-------------EEEEecCCCCccccHHHHHhcCC--cccHHHHHHHHHHhcchhHHhcCCCCCccc
Q psy1503 142 RISSGKVSLGGT-------------VSYASQEPWIFAATIRQNILFGL--PYLRRRYADVIRVCALQDDFDSLPNGDFTV 206 (265)
Q Consensus 142 ~~~~G~i~~~g~-------------i~~v~Q~~~l~~~ti~eni~~~~--~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~ 206 (265)
+|++|+|.++|. ++|+||+|++|++|++|||.++. ..++++++++++.+++++++.++|+|++|.
T Consensus 383 ~~~~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~i~~~l~~~~l~~~i~~lp~gldt~ 462 (571)
T TIGR02203 383 EPDSGQILLDGHDLADYTLASLRRQVALVSQDVVLFNDTIANNIAYGRTEQADRAEIERALAAAYAQDFVDKLPLGLDTP 462 (571)
T ss_pred CCCCCeEEECCEeHHhcCHHHHHhhceEEccCcccccccHHHHHhcCCCCCCCHHHHHHHHHHcChHHHHHhCcCcccce
Confidence 999999999983 99999999999999999999986 367888999999999999999999999999
Q ss_pred cCCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHHhhcC
Q psy1503 207 VGERGASLSGGQKARINLARAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGCLTSG 264 (265)
Q Consensus 207 vg~~g~~LSgGqrqRialARal~~~~~illLDEp~s~LD~~~~~~i~~~~i~~~l~~~ 264 (265)
+|++|.+|||||||||+||||++++|+|+|||||||+||.+++++|.+. +....+++
T Consensus 463 i~~~g~~LSgGqrQRiaLARall~~~~illLDEpts~LD~~~~~~i~~~-L~~~~~~~ 519 (571)
T TIGR02203 463 IGENGVLLSGGQRQRLAIARALLKDAPILILDEATSALDNESERLVQAA-LERLMQGR 519 (571)
T ss_pred ecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHH-HHHHhCCC
Confidence 9999999999999999999999999999999999999999999999654 44444443
No 20
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.3e-50 Score=383.97 Aligned_cols=254 Identities=28% Similarity=0.462 Sum_probs=199.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCCCH----------------------
Q psy1503 5 EKPFTALVDQARKIEIGVVQKTSYLRGLYMTFNLFTTRMALFCTLTSFIFFG-GRLST---------------------- 61 (265)
Q Consensus 5 e~~f~~~i~~~r~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~---------------------- 61 (265)
++.+.+..++.|+..|+.++..-.-.++.-++......++.+. ..+.+.+ ..++-
T Consensus 202 ~~~i~~~se~fR~~TM~vLriAflSs~vLeffa~lsiAlvAv~--~g~~ll~~G~ltl~~~l~~LiLAPEff~PlR~lGs 279 (559)
T COG4988 202 EERIRKDSEDFRKATMSVLRIAFLSSAVLEFFAYLSIALVAVY--IGFRLLGEGDLTLFAGLFVLILAPEFFQPLRDLGS 279 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHccCCccHHHHHHHHHHhHHHHHHHHHHHH
Confidence 5678888999999999998853333333333333322222211 1111111 11111
Q ss_pred ------------HHHHHHHhcCCCCCCcCCC--CCCCCCCcEEEEeEEEEeCCCCCCcceeeceEEEcCCcEEEEEcCCC
Q psy1503 62 ------------DRVLNFLLLGEHEPRKINS--VHSNGKGHVSLDNVTAQWSLQNADLTLNAVSITFKPKQLACIIGAIG 127 (265)
Q Consensus 62 ------------~ri~~~l~~~~~~~~~~~~--~~~~~~~~i~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~ivG~~G 127 (265)
+.+..|++.+......... ........++.+|++|.|+.. +++++|+||++++|+.++|||+||
T Consensus 280 ~fH~~~~g~aa~d~i~~~l~~~~~~~~~~~~~~~~~~~~~ei~~~~l~~~y~~g--~~~l~~l~~t~~~g~~talvG~SG 357 (559)
T COG4988 280 FFHAAAAGEAAADKLFTLLESPVATPGSGEKAEVANEPPIEISLENLSFRYPDG--KPALSDLNLTIKAGQLTALVGASG 357 (559)
T ss_pred HHHHHhhhhhHHHHHHHHhcCCCCCCCCccccccccCCCceeeecceEEecCCC--CcccCCceeEecCCcEEEEECCCC
Confidence 8888888876542222211 111122345566999999753 489999999999999999999999
Q ss_pred ChHHHHHHHHhcCcCCCccEEEEcCe-------------EEEEecCCCCccccHHHHHhcCCc-ccHHHHHHHHHHhcch
Q psy1503 128 AGKTSLLHIILNELRISSGKVSLGGT-------------VSYASQEPWIFAATIRQNILFGLP-YLRRRYADVIRVCALQ 193 (265)
Q Consensus 128 sGKSTLl~~l~g~~~~~~G~i~~~g~-------------i~~v~Q~~~l~~~ti~eni~~~~~-~~~~~~~~~~~~~~l~ 193 (265)
||||||+++|+|+++|++|+|.+||. ++||+|+|.+|++|+||||.++.+ .+++++.++++.+++.
T Consensus 358 aGKSTLl~lL~G~~~~~~G~I~vng~~l~~l~~~~~~k~i~~v~Q~p~lf~gTireNi~l~~~~~s~e~i~~al~~a~l~ 437 (559)
T COG4988 358 AGKSTLLNLLLGFLAPTQGEIRVNGIDLRDLSPEAWRKQISWVSQNPYLFAGTIRENILLARPDASDEEIIAALDQAGLL 437 (559)
T ss_pred CCHHHHHHHHhCcCCCCCceEEECCccccccCHHHHHhHeeeeCCCCccccccHHHHhhccCCcCCHHHHHHHHHHhcHH
Confidence 99999999999999999999999983 999999999999999999999987 4578899999999999
Q ss_pred hHHhcCCCCCccccCCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHHhhcC
Q psy1503 194 DDFDSLPNGDFTVVGERGASLSGGQKARINLARAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGCLTSG 264 (265)
Q Consensus 194 ~~i~~l~~g~~t~vg~~g~~LSgGqrqRialARal~~~~~illLDEp~s~LD~~~~~~i~~~~i~~~l~~~ 264 (265)
+.++. |+|+||.+||+|.+|||||+|||+||||++++++++|||||||+||.++++.|. +.+..+.++|
T Consensus 438 ~~v~~-p~GLdt~ige~G~~LSgGQ~QRlaLARAll~~~~l~llDEpTA~LD~etE~~i~-~~l~~l~~~k 506 (559)
T COG4988 438 EFVPK-PDGLDTVIGEGGAGLSGGQAQRLALARALLSPASLLLLDEPTAHLDAETEQIIL-QALQELAKQK 506 (559)
T ss_pred HhhcC-CCcccchhccCCCCCCHHHHHHHHHHHHhcCCCCEEEecCCccCCCHhHHHHHH-HHHHHHHhCC
Confidence 99999 999999999999999999999999999999999999999999999999998874 4666776665
No 21
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=100.00 E-value=3.1e-50 Score=394.55 Aligned_cols=197 Identities=22% Similarity=0.425 Sum_probs=173.2
Q ss_pred HHHHHHHhcCCCCCCcCCCCCCCCCCcEEEEeEEEEeCCCCCCcceeeceEEEcCCcEEEEEcCCCChHHHHHHHHhcCc
Q psy1503 62 DRVLNFLLLGEHEPRKINSVHSNGKGHVSLDNVTAQWSLQNADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNEL 141 (265)
Q Consensus 62 ~ri~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~g~~ 141 (265)
+|+.++++.++.+.... . .....+.|+++|++|+|+. +.++|+|+||+|++|+.++|+|+||||||||+++|+|++
T Consensus 316 ~ri~~~l~~~~~~~~~~-~-~~~~~~~i~~~~v~f~y~~--~~~il~~i~l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl~ 391 (592)
T PRK10790 316 ERVFELMDGPRQQYGND-D-RPLQSGRIDIDNVSFAYRD--DNLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYY 391 (592)
T ss_pred HHHHHHhcCCCccCCCC-c-cCCCCCeEEEEEEEEEeCC--CCceeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhccc
Confidence 89999987654321111 1 1112346999999999974 356999999999999999999999999999999999999
Q ss_pred CCCccEEEEcCe-------------EEEEecCCCCccccHHHHHhcCCcccHHHHHHHHHHhcchhHHhcCCCCCccccC
Q psy1503 142 RISSGKVSLGGT-------------VSYASQEPWIFAATIRQNILFGLPYLRRRYADVIRVCALQDDFDSLPNGDFTVVG 208 (265)
Q Consensus 142 ~~~~G~i~~~g~-------------i~~v~Q~~~l~~~ti~eni~~~~~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~vg 208 (265)
+|++|+|.+||. |+|+||+|++|++|++|||.++.+.+++++.++++.++++++++.+|+|++|.+|
T Consensus 392 ~p~~G~I~idg~~i~~~~~~~l~~~i~~v~Q~~~lF~~Ti~~NI~~~~~~~d~~i~~a~~~~gl~~~i~~lp~Gldt~i~ 471 (592)
T PRK10790 392 PLTEGEIRLDGRPLSSLSHSVLRQGVAMVQQDPVVLADTFLANVTLGRDISEEQVWQALETVQLAELARSLPDGLYTPLG 471 (592)
T ss_pred CCCCceEEECCEEhhhCCHHHHHhheEEEccCCccccchHHHHHHhCCCCCHHHHHHHHHHcCcHHHHHhcccccccccc
Confidence 999999999984 9999999999999999999999877788899999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHHhhc
Q psy1503 209 ERGASLSGGQKARINLARAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGCLTS 263 (265)
Q Consensus 209 ~~g~~LSgGqrqRialARal~~~~~illLDEp~s~LD~~~~~~i~~~~i~~~l~~ 263 (265)
++|.+|||||||||+||||++++|+|+|||||||+||++++++|.+ .+..+.++
T Consensus 472 e~g~~LSGGqrQRialARaLl~~~~illlDEpts~LD~~t~~~i~~-~l~~~~~~ 525 (592)
T PRK10790 472 EQGNNLSVGQKQLLALARVLVQTPQILILDEATANIDSGTEQAIQQ-ALAAVREH 525 (592)
T ss_pred CCCCCCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHH-HHHHHhCC
Confidence 9999999999999999999999999999999999999999999855 44554443
No 22
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=100.00 E-value=5.5e-50 Score=391.76 Aligned_cols=200 Identities=25% Similarity=0.428 Sum_probs=172.6
Q ss_pred HHHHHHHhcCCCCCCcCCCCCCCCCCcEEEEeEEEEeCCCCCCcceeeceEEEcCCcEEEEEcCCCChHHHHHHHHhcCc
Q psy1503 62 DRVLNFLLLGEHEPRKINSVHSNGKGHVSLDNVTAQWSLQNADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNEL 141 (265)
Q Consensus 62 ~ri~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~g~~ 141 (265)
+|+.++++.++..+......+....+.|+++|++|+|++. .+++|+|+||++++|++++|+||||||||||+++|+|++
T Consensus 312 ~ri~~ll~~~~~~~~~~~~~~~~~~~~i~~~~v~f~y~~~-~~~il~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~ 390 (574)
T PRK11160 312 RRINEITEQKPEVTFPTTSTAAADQVSLTLNNVSFTYPDQ-PQPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAW 390 (574)
T ss_pred HHHHHHHhCCCCCCCCcccCCCCCCCeEEEEEEEEECCCC-CCcceecceEEECCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 9999999865431111111111223579999999999643 346999999999999999999999999999999999999
Q ss_pred CCCccEEEEcCe-------------EEEEecCCCCccccHHHHHhcCCc-ccHHHHHHHHHHhcchhHHhcCCCCCcccc
Q psy1503 142 RISSGKVSLGGT-------------VSYASQEPWIFAATIRQNILFGLP-YLRRRYADVIRVCALQDDFDSLPNGDFTVV 207 (265)
Q Consensus 142 ~~~~G~i~~~g~-------------i~~v~Q~~~l~~~ti~eni~~~~~-~~~~~~~~~~~~~~l~~~i~~l~~g~~t~v 207 (265)
+|++|+|.++|. ++|++|+|++|++|++|||.++.+ .+++++.++++.+++++++.. |+|++|.+
T Consensus 391 ~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~ti~~Ni~~~~~~~~~~~i~~al~~~~l~~~i~~-p~GldT~v 469 (574)
T PRK11160 391 DPQQGEILLNGQPIADYSEAALRQAISVVSQRVHLFSATLRDNLLLAAPNASDEALIEVLQQVGLEKLLED-DKGLNAWL 469 (574)
T ss_pred CCCCceEEECCEEhhhCCHHHHHhheeEEcccchhhcccHHHHhhcCCCccCHHHHHHHHHHcCCHHHHcC-ccccCchh
Confidence 999999999984 999999999999999999999865 467788999999999999999 99999999
Q ss_pred CCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHHhhcC
Q psy1503 208 GERGASLSGGQKARINLARAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGCLTSG 264 (265)
Q Consensus 208 g~~g~~LSgGqrqRialARal~~~~~illLDEp~s~LD~~~~~~i~~~~i~~~l~~~ 264 (265)
|++|.+||||||||++||||++++|+++|||||||+||++++++|.+ .+..+.+++
T Consensus 470 ge~g~~LSgGqrqRialARall~~~~ililDE~ts~lD~~t~~~i~~-~l~~~~~~~ 525 (574)
T PRK11160 470 GEGGRQLSGGEQRRLGIARALLHDAPLLLLDEPTEGLDAETERQILE-LLAEHAQNK 525 (574)
T ss_pred cCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHH-HHHHHcCCC
Confidence 99999999999999999999999999999999999999999998865 455554443
No 23
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=100.00 E-value=2.7e-50 Score=425.40 Aligned_cols=198 Identities=29% Similarity=0.454 Sum_probs=171.9
Q ss_pred HHHHHHHhcCCCCC-CcCC-CC---CCCCCCcEEEEeEEEEeCCCCCCcceeeceEEEcCCcEEEEEcCCCChHHHHHHH
Q psy1503 62 DRVLNFLLLGEHEP-RKIN-SV---HSNGKGHVSLDNVTAQWSLQNADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHI 136 (265)
Q Consensus 62 ~ri~~~l~~~~~~~-~~~~-~~---~~~~~~~i~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~ivG~~GsGKSTLl~~ 136 (265)
+|+.++++.++..+ .... .. +....+.|+|+||+|+|+...+.++|+|+||+|++|+.+|||||||||||||+++
T Consensus 1134 ~ri~~ll~~~~~~~~~~~~~~~~~~~~~~~g~I~f~nVsF~Y~~~~~~~vL~~lsl~i~~G~~vAIVG~SGsGKSTl~~L 1213 (1466)
T PTZ00265 1134 EKYYPLIIRKSNIDVRDNGGIRIKNKNDIKGKIEIMDVNFRYISRPNVPIYKDLTFSCDSKKTTAIVGETGSGKSTVMSL 1213 (1466)
T ss_pred HHHHHHHCCCCcCCCCCCcccccccCCCCCceEEEEEEEEECCCCCCCccccCeeEEEcCCCEEEEECCCCCCHHHHHHH
Confidence 99999997643211 1110 00 1122357999999999975434579999999999999999999999999999999
Q ss_pred HhcCcCC------------------------------------------------------CccEEEEcCe---------
Q psy1503 137 ILNELRI------------------------------------------------------SSGKVSLGGT--------- 153 (265)
Q Consensus 137 l~g~~~~------------------------------------------------------~~G~i~~~g~--------- 153 (265)
|+|+|+| ++|+|.+||.
T Consensus 1214 L~r~ydp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~idG~di~~~~~~~ 1293 (1466)
T PTZ00265 1214 LMRFYDLKNDHHIVFKNEHTNDMTNEQDYQGDEEQNVGMKNVNEFSLTKEGGSGEDSTVFKNSGKILLDGVDICDYNLKD 1293 (1466)
T ss_pred HHHhCCCccccccccccccccccccccccccccccccccccccccccccccccccccccCCCCCeEEECCEEHHhCCHHH
Confidence 9999998 6999999994
Q ss_pred ----EEEEecCCCCccccHHHHHhcCCc-ccHHHHHHHHHHhcchhHHhcCCCCCccccCCCCCCCCHHHHHHHHHHHHH
Q psy1503 154 ----VSYASQEPWIFAATIRQNILFGLP-YLRRRYADVIRVCALQDDFDSLPNGDFTVVGERGASLSGGQKARINLARAV 228 (265)
Q Consensus 154 ----i~~v~Q~~~l~~~ti~eni~~~~~-~~~~~~~~~~~~~~l~~~i~~l~~g~~t~vg~~g~~LSgGqrqRialARal 228 (265)
|+||+|+|.||++||+|||.+|.+ ..+++++++++.+++++++..||+|++|.||++|.+|||||||||||||||
T Consensus 1294 lR~~i~~V~Qep~LF~gTIreNI~~g~~~at~eeI~~A~k~A~l~~fI~~LP~GydT~VGe~G~~LSGGQkQRIaIARAL 1373 (1466)
T PTZ00265 1294 LRNLFSIVSQEPMLFNMSIYENIKFGKEDATREDVKRACKFAAIDEFIESLPNKYDTNVGPYGKSLSGGQKQRIAIARAL 1373 (1466)
T ss_pred HHhhccEeCCCCccccccHHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCccccCCccCCCCCcCCHHHHHHHHHHHHH
Confidence 999999999999999999999965 467789999999999999999999999999999999999999999999999
Q ss_pred ccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHH
Q psy1503 229 YKNADIYLLDDPLSAVDMHVGKHLFEDCISGC 260 (265)
Q Consensus 229 ~~~~~illLDEp~s~LD~~~~~~i~~~~i~~~ 260 (265)
+++|+|||||||||+||+++++.| ++.+..+
T Consensus 1374 lr~p~ILLLDEaTSaLD~~sE~~I-~~~L~~~ 1404 (1466)
T PTZ00265 1374 LREPKILLLDEATSSLDSNSEKLI-EKTIVDI 1404 (1466)
T ss_pred hcCCCEEEEeCcccccCHHHHHHH-HHHHHHH
Confidence 999999999999999999999888 4456555
No 24
>KOG0055|consensus
Probab=100.00 E-value=8.8e-51 Score=410.45 Aligned_cols=202 Identities=32% Similarity=0.495 Sum_probs=178.9
Q ss_pred HHHHHHHhcCCC-CCCcC-CCCCCCCCCcEEEEeEEEEeCCCCCCcceeeceEEEcCCcEEEEEcCCCChHHHHHHHHhc
Q psy1503 62 DRVLNFLLLGEH-EPRKI-NSVHSNGKGHVSLDNVTAQWSLQNADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILN 139 (265)
Q Consensus 62 ~ri~~~l~~~~~-~~~~~-~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~g 139 (265)
.+|.+.++..+. ++... ........+.|+|+||+|+||.+++.++|+++||+|++|+.+||||||||||||++++|.|
T Consensus 322 ~~I~~~i~~~~~i~~~~~~~~~~~~~~g~ief~nV~FsYPsRpdv~Il~g~sl~i~~G~~valVG~SGsGKST~i~LL~R 401 (1228)
T KOG0055|consen 322 YRIFETIDRKPSIDPYSKGGRVLSSIKGEIEFRNVCFSYPSRPDVKILKGVSLKIPSGQTVALVGPSGSGKSTLIQLLAR 401 (1228)
T ss_pred HHHHHHhcCCCCCCcccccCCcccccccceEEEEEEecCCCCCcchhhCCeEEEeCCCCEEEEECCCCCCHHHHHHHHHH
Confidence 788887765432 22111 1122234578999999999998766789999999999999999999999999999999999
Q ss_pred CcCCCccEEEEcCe-------------EEEEecCCCCccccHHHHHhcCCcc-cHHHHHHHHHHhcchhHHhcCCCCCcc
Q psy1503 140 ELRISSGKVSLGGT-------------VSYASQEPWIFAATIRQNILFGLPY-LRRRYADVIRVCALQDDFDSLPNGDFT 205 (265)
Q Consensus 140 ~~~~~~G~i~~~g~-------------i~~v~Q~~~l~~~ti~eni~~~~~~-~~~~~~~~~~~~~l~~~i~~l~~g~~t 205 (265)
+|+|++|+|.+||. ||.|.|+|.||+.||+|||.||.+. ..+++.++++.++.++++..+|+|++|
T Consensus 402 fydP~~G~V~idG~di~~~~~~~lr~~iglV~QePvlF~~tI~eNI~~G~~dat~~~i~~a~k~ana~~fi~~lp~g~~T 481 (1228)
T KOG0055|consen 402 FYDPTSGEVLIDGEDIRNLNLKWLRSQIGLVSQEPVLFATTIRENIRYGKPDATREEIEEAAKAANAHDFILKLPDGYDT 481 (1228)
T ss_pred hcCCCCceEEEcCccchhcchHHHHhhcCeeeechhhhcccHHHHHhcCCCcccHHHHHHHHHHccHHHHHHhhHHhhcc
Confidence 99999999999993 9999999999999999999999864 577889999999999999999999999
Q ss_pred ccCCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHHhhcC
Q psy1503 206 VVGERGASLSGGQKARINLARAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGCLTSG 264 (265)
Q Consensus 206 ~vg~~g~~LSgGqrqRialARal~~~~~illLDEp~s~LD~~~~~~i~~~~i~~~l~~~ 264 (265)
.+||+|.+|||||||||||||||+++|+||||||||||||+++++.+ +++++...+++
T Consensus 482 ~vge~g~qLSGGQKQRIAIARalv~~P~ILLLDEaTSaLD~~se~~V-q~ALd~~~~gr 539 (1228)
T KOG0055|consen 482 LVGERGVQLSGGQKQRIAIARALVRNPKILLLDEATSALDAESERVV-QEALDKASKGR 539 (1228)
T ss_pred cccCCCCCCChHHHHHHHHHHHHHhCCCEEEecCcccccCHHHHHHH-HHHHHHhhcCC
Confidence 99999999999999999999999999999999999999999998665 88888887776
No 25
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=100.00 E-value=2.9e-49 Score=386.21 Aligned_cols=202 Identities=27% Similarity=0.495 Sum_probs=172.3
Q ss_pred HHHHHHHhcCCCCCCcC-C-CCCCCCCCcEEEEeEEEEeCCCCCCcceeeceEEEcCCcEEEEEcCCCChHHHHHHHHhc
Q psy1503 62 DRVLNFLLLGEHEPRKI-N-SVHSNGKGHVSLDNVTAQWSLQNADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILN 139 (265)
Q Consensus 62 ~ri~~~l~~~~~~~~~~-~-~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~g 139 (265)
+|+.++++.++..+... . ..+.+..+.|+++|++|+|+...++++|+|+||++++||.++|+|+||||||||+++|+|
T Consensus 309 ~ri~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~v~f~y~~~~~~~iL~~inl~i~~Ge~i~IvG~sGsGKSTLlklL~g 388 (576)
T TIGR02204 309 ERLIELLQAEPDIKAPAHPKTLPVPLRGEIEFEQVNFAYPARPDQPALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLR 388 (576)
T ss_pred HHHHHHhCCCCcCCCCCCCccCCcCCCceEEEEEEEEECCCCCCCccccceeEEecCCCEEEEECCCCCCHHHHHHHHHh
Confidence 89999987654211111 0 111112346999999999975333579999999999999999999999999999999999
Q ss_pred CcCCCccEEEEcC-------------eEEEEecCCCCccccHHHHHhcCCc-ccHHHHHHHHHHhcchhHHhcCCCCCcc
Q psy1503 140 ELRISSGKVSLGG-------------TVSYASQEPWIFAATIRQNILFGLP-YLRRRYADVIRVCALQDDFDSLPNGDFT 205 (265)
Q Consensus 140 ~~~~~~G~i~~~g-------------~i~~v~Q~~~l~~~ti~eni~~~~~-~~~~~~~~~~~~~~l~~~i~~l~~g~~t 205 (265)
+++|++|+|.++| .++|+||+|++|++|++|||.++.+ .++++++++++.+++.+.++.+|.|++|
T Consensus 389 l~~p~~G~I~i~g~~i~~~~~~~~~~~i~~~~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~~~~l~~~~l~~~i~~l~~gl~t 468 (576)
T TIGR02204 389 FYDPQSGRILLDGVDLRQLDPAELRARMALVPQDPVLFAASVMENIRYGRPDATDEEVEAAARAAHAHEFISALPEGYDT 468 (576)
T ss_pred ccCCCCCEEEECCEEHHhcCHHHHHHhceEEccCCccccccHHHHHhcCCCCCCHHHHHHHHHHcCcHHHHHhCCCCCCc
Confidence 9999999999998 3999999999999999999999865 4567889999999999999999999999
Q ss_pred ccCCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHHhhcC
Q psy1503 206 VVGERGASLSGGQKARINLARAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGCLTSG 264 (265)
Q Consensus 206 ~vg~~g~~LSgGqrqRialARal~~~~~illLDEp~s~LD~~~~~~i~~~~i~~~l~~~ 264 (265)
.+|++|.+||||||||++||||++++|+++|||||||+||..+++.+++ .+..+.+++
T Consensus 469 ~i~~~g~~LSgGq~Qrl~laRal~~~~~ililDEpts~lD~~~~~~i~~-~l~~~~~~~ 526 (576)
T TIGR02204 469 YLGERGVTLSGGQRQRIAIARAILKDAPILLLDEATSALDAESEQLVQQ-ALETLMKGR 526 (576)
T ss_pred eeCCCCCcCCHHHHHHHHHHHHHHhCCCeEEEeCcccccCHHHHHHHHH-HHHHHhCCC
Confidence 9999999999999999999999999999999999999999999988755 444554443
No 26
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=100.00 E-value=3.5e-49 Score=386.95 Aligned_cols=174 Identities=30% Similarity=0.493 Sum_probs=159.9
Q ss_pred CcEEEEeEEEEeCCCCCCcceeeceEEEcCCcEEEEEcCCCChHHHHHHHHhcCcCCCccEEEEcCe-------------
Q psy1503 87 GHVSLDNVTAQWSLQNADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSLGGT------------- 153 (265)
Q Consensus 87 ~~i~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g~------------- 153 (265)
+.|+++|++|+|+. .+++|+|+||++++|++++|+|+||||||||+++|+|+++|++|+|.++|.
T Consensus 333 ~~I~~~~vsf~y~~--~~~iL~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~p~~G~I~i~g~~i~~~~~~~~r~~ 410 (588)
T PRK13657 333 GAVEFDDVSFSYDN--SRQGVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFDPQSGRILIDGTDIRTVTRASLRRN 410 (588)
T ss_pred CeEEEEEEEEEeCC--CCceecceeEEECCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEEhhhCCHHHHHhh
Confidence 46999999999974 246999999999999999999999999999999999999999999999983
Q ss_pred EEEEecCCCCccccHHHHHhcCCc-ccHHHHHHHHHHhcchhHHhcCCCCCccccCCCCCCCCHHHHHHHHHHHHHccCC
Q psy1503 154 VSYASQEPWIFAATIRQNILFGLP-YLRRRYADVIRVCALQDDFDSLPNGDFTVVGERGASLSGGQKARINLARAVYKNA 232 (265)
Q Consensus 154 i~~v~Q~~~l~~~ti~eni~~~~~-~~~~~~~~~~~~~~l~~~i~~l~~g~~t~vg~~g~~LSgGqrqRialARal~~~~ 232 (265)
|+|+||+|++|++|++|||.++.+ .++++++++++.+++++++..+|+|++|.+|++|.+||||||||++||||++++|
T Consensus 411 i~~v~Q~~~lf~~Ti~~Ni~~~~~~~~d~~i~~al~~~~l~~~i~~lp~gldt~i~~~g~~LSgGq~QRialARall~~~ 490 (588)
T PRK13657 411 IAVVFQDAGLFNRSIEDNIRVGRPDATDEEMRAAAERAQAHDFIERKPDGYDTVVGERGRQLSGGERQRLAIARALLKDP 490 (588)
T ss_pred eEEEecCcccccccHHHHHhcCCCCCCHHHHHHHHHHhCHHHHHHhCcccccchhcCCCCCCCHHHHHHHHHHHHHhcCC
Confidence 999999999999999999999864 4577888999999999999999999999999999999999999999999999999
Q ss_pred CEEEEeCCCCCcCHHHHHHHHHHHHHHHhhc
Q psy1503 233 DIYLLDDPLSAVDMHVGKHLFEDCISGCLTS 263 (265)
Q Consensus 233 ~illLDEp~s~LD~~~~~~i~~~~i~~~l~~ 263 (265)
+|+|||||||+||+++++.|++.. ..+.++
T Consensus 491 ~iliLDEpts~LD~~t~~~i~~~l-~~~~~~ 520 (588)
T PRK13657 491 PILILDEATSALDVETEAKVKAAL-DELMKG 520 (588)
T ss_pred CEEEEeCCccCCCHHHHHHHHHHH-HHHhcC
Confidence 999999999999999999996644 344333
No 27
>PTZ00243 ABC transporter; Provisional
Probab=100.00 E-value=9.8e-50 Score=423.69 Aligned_cols=264 Identities=34% Similarity=0.554 Sum_probs=227.7
Q ss_pred CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCH-------------------
Q psy1503 1 MYAWEKPFTALVDQARKIEIGVVQKTSYLRGLYMTFNLFTTRMALFCTLTSFIFFGGRLST------------------- 61 (265)
Q Consensus 1 ~~~we~~f~~~i~~~r~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~------------------- 61 (265)
+|+||+.|.+++.+.|++|++.+++..++.++..+++++.+.++.+++|++|.+.++.+++
T Consensus 440 ~~~wE~~f~~ri~~~R~~El~~l~~~~~~~~~~~~~~~~~p~l~~~~~f~~y~~~g~~Lt~~~vft~laL~~~L~~Pl~~ 519 (1560)
T PTZ00243 440 FMAWEPCFVANIEDKRARELRYLRDVQLARVATSFVNNATPTLMIAVVFTVYYLLGHELTPEVVFPTIALLGVLRMPFFM 519 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 5899999999999999999999999999999999999999999998999999888887876
Q ss_pred ---------------HHHHHHHhcCCCCCC------cC--------C--C-----------------C------------
Q psy1503 62 ---------------DRVLNFLLLGEHEPR------KI--------N--S-----------------V------------ 81 (265)
Q Consensus 62 ---------------~ri~~~l~~~~~~~~------~~--------~--~-----------------~------------ 81 (265)
+||.+||..++.... .. . . .
T Consensus 520 lp~~~~~~~~a~vS~~RI~~fL~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 599 (1560)
T PTZ00243 520 IPWVFTTVLQFLVSIKRISTFLECDNATCSTVQDMEEYWREQREHSTACQLAAVLENVDVTAFVPVKLPRAPKVKTSLLS 599 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCccccccccccchhhcccccccccccccccccccccccccccccccccccccccccc
Confidence 999999976542100 00 0 0 0
Q ss_pred --------------CCCCCCcEEEEeEEEEeCCC-------------------------------------CCCcceeec
Q psy1503 82 --------------HSNGKGHVSLDNVTAQWSLQ-------------------------------------NADLTLNAV 110 (265)
Q Consensus 82 --------------~~~~~~~i~~~~~~~~~~~~-------------------------------------~~~~~l~~i 110 (265)
.....+.+.++|++++|+.. .++++|+|+
T Consensus 600 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~i 679 (1560)
T PTZ00243 600 RALRMLCCEQCRPTKRHPSPSVVVEDTDYGSPSSASRHIVEGGTGGGHEATPTSERSAKTPKMKTDDFFELEPKVLLRDV 679 (1560)
T ss_pred cchhhccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccCCceeEeee
Confidence 00001235667776654310 124589999
Q ss_pred eEEEcCCcEEEEEcCCCChHHHHHHHHhcCcCCCccEEEEcCeEEEEecCCCCccccHHHHHhcCCcccHHHHHHHHHHh
Q psy1503 111 SITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSLGGTVSYASQEPWIFAATIRQNILFGLPYLRRRYADVIRVC 190 (265)
Q Consensus 111 sl~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g~i~~v~Q~~~l~~~ti~eni~~~~~~~~~~~~~~~~~~ 190 (265)
||+|++|++++|+||||||||||+++|+|+++|++|+|.+++.|+|++|+||+|++|++|||.++.+++.+++.++++.|
T Consensus 680 sl~i~~G~~~~IiG~nGsGKSTLL~~i~G~~~~~~G~i~~~~~i~yv~Q~~~l~~~Tv~enI~~~~~~~~~~~~~~~~~~ 759 (1560)
T PTZ00243 680 SVSVPRGKLTVVLGATGSGKSTLLQSLLSQFEISEGRVWAERSIAYVPQQAWIMNATVRGNILFFDEEDAARLADAVRVS 759 (1560)
T ss_pred EEEECCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCeEEEEeCCCccCCCcHHHHHHcCChhhHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999998777777888999999
Q ss_pred cchhHHhcCCCCCccccCCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHHhhcC
Q psy1503 191 ALQDDFDSLPNGDFTVVGERGASLSGGQKARINLARAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGCLTSG 264 (265)
Q Consensus 191 ~l~~~i~~l~~g~~t~vg~~g~~LSgGqrqRialARal~~~~~illLDEp~s~LD~~~~~~i~~~~i~~~l~~~ 264 (265)
++.++++.+|+|++|.+|++|.+|||||||||+||||+|++|+|+|||||||+||++++++++++++.+.++++
T Consensus 760 ~l~~~l~~l~~g~~t~i~~~g~~LSGGQkqRvaLARAl~~~p~illLDEP~saLD~~~~~~i~~~~~~~~~~~~ 833 (1560)
T PTZ00243 760 QLEADLAQLGGGLETEIGEKGVNLSGGQKARVSLARAVYANRDVYLLDDPLSALDAHVGERVVEECFLGALAGK 833 (1560)
T ss_pred hhHHHHHHhhccchHHhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHhhCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999987666544
No 28
>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=100.00 E-value=8.8e-49 Score=380.98 Aligned_cols=195 Identities=29% Similarity=0.419 Sum_probs=169.7
Q ss_pred HHHHHHHhcCCCCCCcCCCCCCCCCCcEEEEeEEEEeCCCCCCcceeeceEEEcCCcEEEEEcCCCChHHHHHHHHhcCc
Q psy1503 62 DRVLNFLLLGEHEPRKINSVHSNGKGHVSLDNVTAQWSLQNADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNEL 141 (265)
Q Consensus 62 ~ri~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~g~~ 141 (265)
+|+.++++.++.+.... . .....+.++++|++|+|+.. ++++|+|+||++++|++++|+||||||||||+++|+|++
T Consensus 292 ~ri~~~l~~~~~~~~~~-~-~~~~~~~i~~~~v~~~y~~~-~~~~l~~~~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~ 368 (544)
T TIGR01842 292 KRLNELLANYPSRDPAM-P-LPEPEGHLSVENVTIVPPGG-KKPTLRGISFRLQAGEALAIIGPSGSGKSTLARLIVGIW 368 (544)
T ss_pred HHHHHHHhCCccccCCC-C-CCCCCCeEEEEEEEEEcCCC-CccccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 99999997654322111 1 11123469999999999643 357899999999999999999999999999999999999
Q ss_pred CCCccEEEEcCe-------------EEEEecCCCCccccHHHHHhcCCc-ccHHHHHHHHHHhcchhHHhcCCCCCcccc
Q psy1503 142 RISSGKVSLGGT-------------VSYASQEPWIFAATIRQNILFGLP-YLRRRYADVIRVCALQDDFDSLPNGDFTVV 207 (265)
Q Consensus 142 ~~~~G~i~~~g~-------------i~~v~Q~~~l~~~ti~eni~~~~~-~~~~~~~~~~~~~~l~~~i~~l~~g~~t~v 207 (265)
+|++|+|.++|. ++|+||+|++|++|++|||.++.+ .+++++.++++.+++++.++.+|+|++|.+
T Consensus 369 ~~~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~lf~~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~gl~t~~ 448 (544)
T TIGR01842 369 PPTSGSVRLDGADLKQWDRETFGKHIGYLPQDVELFPGTVAENIARFGENADPEKIIEAAKLAGVHELILRLPDGYDTVI 448 (544)
T ss_pred CCCCceEEECCEehhhCCHHHHhhheEEecCCcccccccHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCcccccccc
Confidence 999999999983 999999999999999999997654 567788889999999999999999999999
Q ss_pred CCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHH
Q psy1503 208 GERGASLSGGQKARINLARAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGC 260 (265)
Q Consensus 208 g~~g~~LSgGqrqRialARal~~~~~illLDEp~s~LD~~~~~~i~~~~i~~~ 260 (265)
|++|.+||||||||++||||++++|+++|||||||+||+++++++.+ ++..+
T Consensus 449 ~~~g~~LSgGq~qrl~lARall~~~~ililDEpts~LD~~~~~~i~~-~l~~~ 500 (544)
T TIGR01842 449 GPGGATLSGGQRQRIALARALYGDPKLVVLDEPNSNLDEEGEQALAN-AIKAL 500 (544)
T ss_pred CCCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccccCHHHHHHHHH-HHHHH
Confidence 99999999999999999999999999999999999999999998865 44444
No 29
>KOG0057|consensus
Probab=100.00 E-value=4.4e-49 Score=369.71 Aligned_cols=176 Identities=31% Similarity=0.520 Sum_probs=163.6
Q ss_pred CCCcEEEEeEEEEeCCCCCCcceeeceEEEcCCcEEEEEcCCCChHHHHHHHHhcCcCCCccEEEEcCe-----------
Q psy1503 85 GKGHVSLDNVTAQWSLQNADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSLGGT----------- 153 (265)
Q Consensus 85 ~~~~i~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g~----------- 153 (265)
..+.|+|+||+|+|++ ++++|+++||+|++||.+||+|+|||||||++++|+++++ ++|+|.+||+
T Consensus 348 ~~~~I~F~dV~f~y~~--k~~iL~gvsf~I~kGekVaIvG~nGsGKSTilr~LlrF~d-~sG~I~IdG~dik~~~~~SlR 424 (591)
T KOG0057|consen 348 FGGSIEFDDVHFSYGP--KRKVLKGVSFTIPKGEKVAIVGSNGSGKSTILRLLLRFFD-YSGSILIDGQDIKEVSLESLR 424 (591)
T ss_pred CCCcEEEEeeEEEeCC--CCceecceeEEecCCCEEEEECCCCCCHHHHHHHHHHHhc-cCCcEEECCeeHhhhChHHhh
Confidence 3457999999999974 4569999999999999999999999999999999999999 9999999994
Q ss_pred --EEEEecCCCCccccHHHHHhcCCcc-cHHHHHHHHHHhcchhHHhcCCCCCccccCCCCCCCCHHHHHHHHHHHHHcc
Q psy1503 154 --VSYASQEPWIFAATIRQNILFGLPY-LRRRYADVIRVCALQDDFDSLPNGDFTVVGERGASLSGGQKARINLARAVYK 230 (265)
Q Consensus 154 --i~~v~Q~~~l~~~ti~eni~~~~~~-~~~~~~~~~~~~~l~~~i~~l~~g~~t~vg~~g~~LSgGqrqRialARal~~ 230 (265)
|||||||..||+.||.+||.+|.+. .++++.++++..++++.+.++|+||+|.|||+|..|||||||||+||||+++
T Consensus 425 ~~Ig~VPQd~~LFndTIl~NI~YGn~sas~eeV~e~~k~a~~hd~i~~l~~GY~T~VGerG~~LSGGekQrvslaRa~lK 504 (591)
T KOG0057|consen 425 QSIGVVPQDSVLFNDTILYNIKYGNPSASDEEVVEACKRAGLHDVISRLPDGYQTLVGERGLMLSGGEKQRVSLARAFLK 504 (591)
T ss_pred hheeEeCCcccccchhHHHHhhcCCCCcCHHHHHHHHHHcCcHHHHHhccccchhhHhhcccccccchHHHHHHHHHHhc
Confidence 9999999999999999999999864 5677888999999999999999999999999999999999999999999999
Q ss_pred CCCEEEEeCCCCCcCHHHHHHHHHHHHHHHhhcC
Q psy1503 231 NADIYLLDDPLSAVDMHVGKHLFEDCISGCLTSG 264 (265)
Q Consensus 231 ~~~illLDEp~s~LD~~~~~~i~~~~i~~~l~~~ 264 (265)
||+|+++|||||+||.+||++|++.... .+.+|
T Consensus 505 da~Il~~DEaTS~LD~~TE~~i~~~i~~-~~~~r 537 (591)
T KOG0057|consen 505 DAPILLLDEATSALDSETEREILDMIMD-VMSGR 537 (591)
T ss_pred CCCeEEecCcccccchhhHHHHHHHHHH-hcCCC
Confidence 9999999999999999999999886654 66555
No 30
>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=100.00 E-value=1.6e-48 Score=388.81 Aligned_cols=199 Identities=25% Similarity=0.399 Sum_probs=172.2
Q ss_pred HHHHHHHhcCCCCCCcCCCCCCCCCCcEEEEeEEEEeCCCCCCcceeeceEEEcCCcEEEEEcCCCChHHHHHHHHhcCc
Q psy1503 62 DRVLNFLLLGEHEPRKINSVHSNGKGHVSLDNVTAQWSLQNADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNEL 141 (265)
Q Consensus 62 ~ri~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~g~~ 141 (265)
+|+.++++.++..+...........+.|+++|++|+|+.. .+++|+|+||+|++|+.++|+|+||||||||+++|+|++
T Consensus 429 ~ri~~~l~~~~e~~~~~~~~~~~~~~~i~~~~vsf~y~~~-~~~il~~i~l~i~~G~~vaivG~sGsGKSTL~~ll~g~~ 507 (694)
T TIGR01846 429 ERLGDILNSPTEPRSAGLAALPELRGAITFENIRFRYAPD-SPEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLY 507 (694)
T ss_pred HHHHHHHcCCCCccCCCCCCCCCCCCeEEEEEEEEEcCCC-CccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 9999998765432211111111223579999999999743 356999999999999999999999999999999999999
Q ss_pred CCCccEEEEcCe-------------EEEEecCCCCccccHHHHHhcCCc-ccHHHHHHHHHHhcchhHHhcCCCCCcccc
Q psy1503 142 RISSGKVSLGGT-------------VSYASQEPWIFAATIRQNILFGLP-YLRRRYADVIRVCALQDDFDSLPNGDFTVV 207 (265)
Q Consensus 142 ~~~~G~i~~~g~-------------i~~v~Q~~~l~~~ti~eni~~~~~-~~~~~~~~~~~~~~l~~~i~~l~~g~~t~v 207 (265)
+|++|+|.++|. ++||+|++++|++|++|||.++.+ .+++++.++++.+++++.+..+|+|++|.+
T Consensus 508 ~p~~G~I~idg~~i~~~~~~~~r~~i~~v~q~~~lf~~ti~eNi~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~t~i 587 (694)
T TIGR01846 508 TPQHGQVLVDGVDLAIADPAWLRRQMGVVLQENVLFSRSIRDNIALCNPGAPFEHVIHAAKLAGAHDFISELPQGYNTEV 587 (694)
T ss_pred CCCCceEEECCEehhhCCHHHHHHhCeEEccCCeehhhhHHHHHhcCCCCCCHHHHHHHHHHcChHHHHHhCcCccCcEe
Confidence 999999999984 899999999999999999999764 467788899999999999999999999999
Q ss_pred CCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHHhh
Q psy1503 208 GERGASLSGGQKARINLARAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGCLT 262 (265)
Q Consensus 208 g~~g~~LSgGqrqRialARal~~~~~illLDEp~s~LD~~~~~~i~~~~i~~~l~ 262 (265)
|++|.+||||||||++||||++++|+|+|||||||+||+.+++++.+.. ..+.+
T Consensus 588 ~~~g~~LSgGq~qri~lARall~~~~ililDEpts~LD~~~~~~i~~~l-~~~~~ 641 (694)
T TIGR01846 588 GEKGANLSGGQRQRIAIARALVGNPRILIFDEATSALDYESEALIMRNM-REICR 641 (694)
T ss_pred cCCCCCCCHHHHHHHHHHHHHHhCCCEEEEECCCcCCCHHHHHHHHHHH-HHHhC
Confidence 9999999999999999999999999999999999999999999986644 44433
No 31
>PLN03130 ABC transporter C family member; Provisional
Probab=100.00 E-value=1.2e-48 Score=416.09 Aligned_cols=201 Identities=23% Similarity=0.349 Sum_probs=177.0
Q ss_pred HHHHHHHhcCCCCCCc--CCCCC--CCCCCcEEEEeEEEEeCCCCCCcceeeceEEEcCCcEEEEEcCCCChHHHHHHHH
Q psy1503 62 DRVLNFLLLGEHEPRK--INSVH--SNGKGHVSLDNVTAQWSLQNADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHII 137 (265)
Q Consensus 62 ~ri~~~l~~~~~~~~~--~~~~~--~~~~~~i~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~ivG~~GsGKSTLl~~l 137 (265)
+|+.++++.+++++.. ....+ .+..+.|+|+||+|+|++. .+++|+|+||+|++||.+||||+||||||||+++|
T Consensus 1207 eRi~e~~~~~~E~~~~~~~~~~~~~wp~~g~I~f~nVsf~Y~~~-~~~VL~~is~~I~~GekVaIVGrSGSGKSTLl~lL 1285 (1622)
T PLN03130 1207 ERVGTYIDLPSEAPLVIENNRPPPGWPSSGSIKFEDVVLRYRPE-LPPVLHGLSFEISPSEKVGIVGRTGAGKSSMLNAL 1285 (1622)
T ss_pred HHHHHHhCCCCcccccccCCCCCCCCCCCCcEEEEEEEEEeCCC-CCceecceeEEEcCCCEEEEECCCCCCHHHHHHHH
Confidence 9999999866432211 01111 1234679999999999643 35799999999999999999999999999999999
Q ss_pred hcCcCCCccEEEEcCe-------------EEEEecCCCCccccHHHHHhcCCcccHHHHHHHHHHhcchhHHhcCCCCCc
Q psy1503 138 LNELRISSGKVSLGGT-------------VSYASQEPWIFAATIRQNILFGLPYLRRRYADVIRVCALQDDFDSLPNGDF 204 (265)
Q Consensus 138 ~g~~~~~~G~i~~~g~-------------i~~v~Q~~~l~~~ti~eni~~~~~~~~~~~~~~~~~~~l~~~i~~l~~g~~ 204 (265)
+|+++|++|+|.+||. |++|||+|.||++||||||.++.++++++++++++.+++++++..+|.|++
T Consensus 1286 ~rl~~p~~G~I~IDG~dI~~i~l~~LR~~IsiVpQdp~LF~GTIreNLd~~~~~tdeei~~Al~~a~l~~~I~~lp~GLd 1365 (1622)
T PLN03130 1286 FRIVELERGRILIDGCDISKFGLMDLRKVLGIIPQAPVLFSGTVRFNLDPFNEHNDADLWESLERAHLKDVIRRNSLGLD 1365 (1622)
T ss_pred hCcCCCCCceEEECCEecccCCHHHHHhccEEECCCCccccccHHHHhCcCCCCCHHHHHHHHHHcCcHHHHHhCccccC
Confidence 9999999999999994 999999999999999999999877788899999999999999999999999
Q ss_pred cccCCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHHhhcC
Q psy1503 205 TVVGERGASLSGGQKARINLARAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGCLTSG 264 (265)
Q Consensus 205 t~vg~~g~~LSgGqrqRialARal~~~~~illLDEp~s~LD~~~~~~i~~~~i~~~l~~~ 264 (265)
|.|||+|.+|||||||||+|||||+++|+|+|||||||+||.++++.| ++.+...++++
T Consensus 1366 t~Vge~G~nLSgGQrQrlaLARALLr~p~ILILDEATSaLD~~Te~~I-q~~I~~~~~~~ 1424 (1622)
T PLN03130 1366 AEVSEAGENFSVGQRQLLSLARALLRRSKILVLDEATAAVDVRTDALI-QKTIREEFKSC 1424 (1622)
T ss_pred ccccCCCCCCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHH-HHHHHHHCCCC
Confidence 999999999999999999999999999999999999999999999887 66777766654
No 32
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=100.00 E-value=3.4e-48 Score=378.80 Aligned_cols=199 Identities=32% Similarity=0.519 Sum_probs=171.6
Q ss_pred HHHHHHHhcCCCCCCcCCCCCCCCCCcEEEEeEEEEeCCCCCCcceeeceEEEcCCcEEEEEcCCCChHHHHHHHHhcCc
Q psy1503 62 DRVLNFLLLGEHEPRKINSVHSNGKGHVSLDNVTAQWSLQNADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNEL 141 (265)
Q Consensus 62 ~ri~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~g~~ 141 (265)
+|+.++++.++..+..... .....+.|+++|++|+|+.. ..++|+|+||++++|++++|+||||||||||+++|+|++
T Consensus 288 ~ri~~ll~~~~~~~~~~~~-~~~~~~~I~~~~v~~~y~~~-~~~~l~~i~~~i~~G~~~~ivG~sGsGKSTLl~ll~g~~ 365 (569)
T PRK10789 288 SRIRAMLAEAPVVKDGSEP-VPEGRGELDVNIRQFTYPQT-DHPALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHF 365 (569)
T ss_pred HHHHHHHcCCCcccCCCCC-CCCCCCcEEEEEEEEECCCC-CCccccCeeEEECCCCEEEEECCCCCCHHHHHHHHhccc
Confidence 8999998765422111111 11123469999999999743 357999999999999999999999999999999999999
Q ss_pred CCCccEEEEcCe-------------EEEEecCCCCccccHHHHHhcCCc-ccHHHHHHHHHHhcchhHHhcCCCCCcccc
Q psy1503 142 RISSGKVSLGGT-------------VSYASQEPWIFAATIRQNILFGLP-YLRRRYADVIRVCALQDDFDSLPNGDFTVV 207 (265)
Q Consensus 142 ~~~~G~i~~~g~-------------i~~v~Q~~~l~~~ti~eni~~~~~-~~~~~~~~~~~~~~l~~~i~~l~~g~~t~v 207 (265)
+|++|+|.++|. ++|++|+|++|++|++|||.++.+ .++++++++++.+++++++..+|+|++|.+
T Consensus 366 ~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~ti~~Ni~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~gl~t~~ 445 (569)
T PRK10789 366 DVSEGDIRFHDIPLTKLQLDSWRSRLAVVSQTPFLFSDTVANNIALGRPDATQQEIEHVARLASVHDDILRLPQGYDTEV 445 (569)
T ss_pred CCCCCEEEECCEEHhhCCHHHHHhheEEEccCCeeccccHHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCcCccccee
Confidence 999999999983 899999999999999999999854 567788899999999999999999999999
Q ss_pred CCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHHhhc
Q psy1503 208 GERGASLSGGQKARINLARAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGCLTS 263 (265)
Q Consensus 208 g~~g~~LSgGqrqRialARal~~~~~illLDEp~s~LD~~~~~~i~~~~i~~~l~~ 263 (265)
|++|.+||||||||++||||++++|+++|||||||+||+++++++.+. +..+.++
T Consensus 446 ~~~g~~LSgGq~qRi~lARall~~~~illlDEpts~LD~~~~~~i~~~-l~~~~~~ 500 (569)
T PRK10789 446 GERGVMLSGGQKQRISIARALLLNAEILILDDALSAVDGRTEHQILHN-LRQWGEG 500 (569)
T ss_pred cCCCCcCCHHHHHHHHHHHHHhcCCCEEEEECccccCCHHHHHHHHHH-HHHHhCC
Confidence 999999999999999999999999999999999999999999998764 4444443
No 33
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=100.00 E-value=1.4e-48 Score=415.05 Aligned_cols=201 Identities=22% Similarity=0.333 Sum_probs=175.0
Q ss_pred HHHHHHHhcCCCCCC--cCCCCC--CCCCCcEEEEeEEEEeCCCCCCcceeeceEEEcCCcEEEEEcCCCChHHHHHHHH
Q psy1503 62 DRVLNFLLLGEHEPR--KINSVH--SNGKGHVSLDNVTAQWSLQNADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHII 137 (265)
Q Consensus 62 ~ri~~~l~~~~~~~~--~~~~~~--~~~~~~i~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~ivG~~GsGKSTLl~~l 137 (265)
+|+.++++.+++.+. .....+ .+..+.|+|+||+|+|++. ..++|+|+||+|++||.+||||++|||||||+++|
T Consensus 1254 eRi~~~~~~~~e~~~~~~~~~~~~~wp~~g~I~f~nVsf~Y~~~-~~~vL~~is~~I~~GekiaIVGrTGsGKSTL~~lL 1332 (1522)
T TIGR00957 1254 ERLKEYSETEKEAPWQIQETAPPSGWPPRGRVEFRNYCLRYRED-LDLVLRHINVTIHGGEKVGIVGRTGAGKSSLTLGL 1332 (1522)
T ss_pred HHHHHHhcCCCCccccccCCCCCCCCCCCCcEEEEEEEEEeCCC-CcccccceeEEEcCCCEEEEECCCCCCHHHHHHHH
Confidence 999999976543221 111111 1234679999999999753 34799999999999999999999999999999999
Q ss_pred hcCcCCCccEEEEcCe-------------EEEEecCCCCccccHHHHHhcCCcccHHHHHHHHHHhcchhHHhcCCCCCc
Q psy1503 138 LNELRISSGKVSLGGT-------------VSYASQEPWIFAATIRQNILFGLPYLRRRYADVIRVCALQDDFDSLPNGDF 204 (265)
Q Consensus 138 ~g~~~~~~G~i~~~g~-------------i~~v~Q~~~l~~~ti~eni~~~~~~~~~~~~~~~~~~~l~~~i~~l~~g~~ 204 (265)
+|+++|++|+|.+||. +++|||+|.||++|||+||.....+++++++++++.|++++.+..+|+|++
T Consensus 1333 ~rl~~~~~G~I~IdG~dI~~i~~~~LR~~i~iVpQdp~LF~gTIr~NLdp~~~~sdeei~~al~~a~l~~~I~~lp~GLd 1412 (1522)
T TIGR00957 1333 FRINESAEGEIIIDGLNIAKIGLHDLRFKITIIPQDPVLFSGSLRMNLDPFSQYSDEEVWWALELAHLKTFVSALPDKLD 1412 (1522)
T ss_pred hcCccCCCCeEEECCEEccccCHHHHHhcCeEECCCCcccCccHHHHcCcccCCCHHHHHHHHHHcCcHHHHhhCccCCC
Confidence 9999999999999993 999999999999999999984335778889999999999999999999999
Q ss_pred cccCCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHHhhcC
Q psy1503 205 TVVGERGASLSGGQKARINLARAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGCLTSG 264 (265)
Q Consensus 205 t~vg~~g~~LSgGqrqRialARal~~~~~illLDEp~s~LD~~~~~~i~~~~i~~~l~~~ 264 (265)
|.+|++|.+||||||||++|||||+++|+|+|||||||+||.++++.| ++.+...++++
T Consensus 1413 t~v~e~G~~LSgGQrQrl~LARALLr~~~ILiLDEaTSalD~~Te~~I-q~~l~~~~~~~ 1471 (1522)
T TIGR00957 1413 HECAEGGENLSVGQRQLVCLARALLRKTKILVLDEATAAVDLETDNLI-QSTIRTQFEDC 1471 (1522)
T ss_pred ceecCCCCcCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHH-HHHHHHHcCCC
Confidence 999999999999999999999999999999999999999999998776 66777666654
No 34
>PLN03232 ABC transporter C family member; Provisional
Probab=100.00 E-value=1.8e-48 Score=413.73 Aligned_cols=201 Identities=23% Similarity=0.350 Sum_probs=176.6
Q ss_pred HHHHHHHhcCCCCCCc--CCCCC--CCCCCcEEEEeEEEEeCCCCCCcceeeceEEEcCCcEEEEEcCCCChHHHHHHHH
Q psy1503 62 DRVLNFLLLGEHEPRK--INSVH--SNGKGHVSLDNVTAQWSLQNADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHII 137 (265)
Q Consensus 62 ~ri~~~l~~~~~~~~~--~~~~~--~~~~~~i~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~ivG~~GsGKSTLl~~l 137 (265)
+|+.++++.+++++.. ....+ .+..+.|+++||+|+|++. .+++|+|+||+|++||.+||||+||||||||+++|
T Consensus 1204 eRi~e~~~~~~e~~~~~~~~~~~~~~p~~g~I~f~nVsf~Y~~~-~~~vL~~isl~I~~GekvaIVG~SGSGKSTL~~lL 1282 (1495)
T PLN03232 1204 ERVGNYIDLPSEATAIIENNRPVSGWPSRGSIKFEDVHLRYRPG-LPPVLHGLSFFVSPSEKVGVVGRTGAGKSSMLNAL 1282 (1495)
T ss_pred HHHHHHhcCCccccccccCCCCCCCCCCCCcEEEEEEEEEECCC-CCcccccceEEEcCCCEEEEECCCCCCHHHHHHHH
Confidence 8999999866432211 11111 1234579999999999643 35799999999999999999999999999999999
Q ss_pred hcCcCCCccEEEEcCe-------------EEEEecCCCCccccHHHHHhcCCcccHHHHHHHHHHhcchhHHhcCCCCCc
Q psy1503 138 LNELRISSGKVSLGGT-------------VSYASQEPWIFAATIRQNILFGLPYLRRRYADVIRVCALQDDFDSLPNGDF 204 (265)
Q Consensus 138 ~g~~~~~~G~i~~~g~-------------i~~v~Q~~~l~~~ti~eni~~~~~~~~~~~~~~~~~~~l~~~i~~l~~g~~ 204 (265)
+|+++|++|+|.+||. ++||||+|.+|++||||||.++..+++++++++++.+++++++..+|+|++
T Consensus 1283 ~rl~~p~~G~I~IdG~di~~i~~~~lR~~i~iVpQdp~LF~gTIr~NL~~~~~~sdeei~~al~~a~l~~~I~~lp~GLd 1362 (1495)
T PLN03232 1283 FRIVELEKGRIMIDDCDVAKFGLTDLRRVLSIIPQSPVLFSGTVRFNIDPFSEHNDADLWEALERAHIKDVIDRNPFGLD 1362 (1495)
T ss_pred hCCCcCCCceEEECCEEhhhCCHHHHHhhcEEECCCCeeeCccHHHHcCCCCCCCHHHHHHHHHHcCCHHHHHhCcCCCC
Confidence 9999999999999994 999999999999999999998877788899999999999999999999999
Q ss_pred cccCCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHHhhcC
Q psy1503 205 TVVGERGASLSGGQKARINLARAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGCLTSG 264 (265)
Q Consensus 205 t~vg~~g~~LSgGqrqRialARal~~~~~illLDEp~s~LD~~~~~~i~~~~i~~~l~~~ 264 (265)
|.+|++|.+||||||||++|||||+++|+|+|||||||+||.++++.| ++.+...++++
T Consensus 1363 t~v~e~G~~LSgGQrQrlaLARALLr~~~ILILDEATSaLD~~Te~~I-q~~L~~~~~~~ 1421 (1495)
T PLN03232 1363 AEVSEGGENFSVGQRQLLSLARALLRRSKILVLDEATASVDVRTDSLI-QRTIREEFKSC 1421 (1495)
T ss_pred ceecCCCCCCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHH-HHHHHHHcCCC
Confidence 999999999999999999999999999999999999999999998887 66777666654
No 35
>PTZ00243 ABC transporter; Provisional
Probab=100.00 E-value=2.9e-47 Score=404.82 Aligned_cols=177 Identities=23% Similarity=0.394 Sum_probs=163.7
Q ss_pred CCcEEEEeEEEEeCCCCCCcceeeceEEEcCCcEEEEEcCCCChHHHHHHHHhcCcCCCccEEEEcCe------------
Q psy1503 86 KGHVSLDNVTAQWSLQNADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSLGGT------------ 153 (265)
Q Consensus 86 ~~~i~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g~------------ 153 (265)
.+.|+|+||+|+|++. .+++|+|+||+|++||.+||||+||||||||+++|+|+++|++|+|.+||.
T Consensus 1306 ~G~I~f~nVsf~Y~~~-~~~vL~~vsf~I~~GekVaIVGrTGSGKSTLl~lLlrl~~p~~G~I~IDG~di~~i~l~~LR~ 1384 (1560)
T PTZ00243 1306 AGSLVFEGVQMRYREG-LPLVLRGVSFRIAPREKVGIVGRTGSGKSTLLLTFMRMVEVCGGEIRVNGREIGAYGLRELRR 1384 (1560)
T ss_pred CCeEEEEEEEEEeCCC-CCceeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccCCHHHHHh
Confidence 3579999999999653 356999999999999999999999999999999999999999999999994
Q ss_pred -EEEEecCCCCccccHHHHHhcCCcccHHHHHHHHHHhcchhHHhcCCCCCccccCCCCCCCCHHHHHHHHHHHHHccC-
Q psy1503 154 -VSYASQEPWIFAATIRQNILFGLPYLRRRYADVIRVCALQDDFDSLPNGDFTVVGERGASLSGGQKARINLARAVYKN- 231 (265)
Q Consensus 154 -i~~v~Q~~~l~~~ti~eni~~~~~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~vg~~g~~LSgGqrqRialARal~~~- 231 (265)
|+||||+|.||++|||+||..+..+++++++++++.|++++.+..+|+|++|.+|++|.+|||||||||+|||||+++
T Consensus 1385 ~I~iVpQdp~LF~gTIreNIdp~~~~sdeeI~~Al~~a~l~~~I~~lp~Gldt~vge~G~nLSgGQrQrLaLARALL~~~ 1464 (1560)
T PTZ00243 1385 QFSMIPQDPVLFDGTVRQNVDPFLEASSAEVWAALELVGLRERVASESEGIDSRVLEGGSNYSVGQRQLMCMARALLKKG 1464 (1560)
T ss_pred cceEECCCCccccccHHHHhCcccCCCHHHHHHHHHHCCChHHHhhCcccccccccCCcCcCCHHHHHHHHHHHHHhcCC
Confidence 999999999999999999987666778899999999999999999999999999999999999999999999999995
Q ss_pred CCEEEEeCCCCCcCHHHHHHHHHHHHHHHhhcC
Q psy1503 232 ADIYLLDDPLSAVDMHVGKHLFEDCISGCLTSG 264 (265)
Q Consensus 232 ~~illLDEp~s~LD~~~~~~i~~~~i~~~l~~~ 264 (265)
|+|+|||||||+||+++++.| ++.+...++++
T Consensus 1465 ~~ILlLDEATSaLD~~te~~I-q~~L~~~~~~~ 1496 (1560)
T PTZ00243 1465 SGFILMDEATANIDPALDRQI-QATVMSAFSAY 1496 (1560)
T ss_pred CCEEEEeCCCccCCHHHHHHH-HHHHHHHCCCC
Confidence 899999999999999999887 55666666654
No 36
>KOG0056|consensus
Probab=100.00 E-value=2.1e-48 Score=360.50 Aligned_cols=256 Identities=21% Similarity=0.391 Sum_probs=205.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHH-------------HHHHHHHHHHh--------------
Q psy1503 6 KPFTALVDQARKIEIGVVQKTSYLRGLY---MTFNLFTTRMA-------------LFCTLTSFIFF-------------- 55 (265)
Q Consensus 6 ~~f~~~i~~~r~~e~~~~~~~~~~~~~~---~~~~~~~~~~~-------------~~~~~~~~~~~-------------- 55 (265)
++|.+.+..+.+.|.+.+....++..+. .++......+. -++.|.+|++.
T Consensus 422 erYreAil~Yqk~E~ks~~sLnfLN~~Qn~Ii~lgll~gsll~aY~Vt~q~ltVGDfVlf~TYliqLy~PLN~FGT~YR~ 501 (790)
T KOG0056|consen 422 ERYREAILKYQKQEWKSLASLNFLNIVQNGIIGLGLLAGSLLCAYRVTEQTLTVGDFVLFLTYLIQLYMPLNFFGTYYRS 501 (790)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHhhhhheeeeeeeeccccccceehHHHHHHHHhCchHHHHHHHHH
Confidence 4577778888888887766555544332 22222222111 13334444331
Q ss_pred --cCCCCHHHHHHHHhcCCCCCCcCCCCC-CCCCCcEEEEeEEEEeCCCCCCcceeeceEEEcCCcEEEEEcCCCChHHH
Q psy1503 56 --GGRLSTDRVLNFLLLGEHEPRKINSVH-SNGKGHVSLDNVTAQWSLQNADLTLNAVSITFKPKQLACIIGAIGAGKTS 132 (265)
Q Consensus 56 --~~~l~~~ri~~~l~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~ivG~~GsGKST 132 (265)
.+.++.++.++++..+++-.+.+...| ....+.|+|+||+|.|+. .+++|+||||++.+|+.+|+|||||+||||
T Consensus 502 iQ~nfiDmEnmfdllkee~eVvd~P~a~pl~~~~G~i~fsnvtF~Y~p--~k~vl~disF~v~pGktvAlVG~SGaGKST 579 (790)
T KOG0056|consen 502 IQKNFIDMENMFDLLKEEPEVVDLPGAPPLKVTQGKIEFSNVTFAYDP--GKPVLSDISFTVQPGKTVALVGPSGAGKST 579 (790)
T ss_pred HHHhhhhHHHHHHHhhcCchhhcCCCCCCccccCCeEEEEEeEEecCC--CCceeecceEEecCCcEEEEECCCCCchhH
Confidence 134455899988876543211111111 224578999999999974 578999999999999999999999999999
Q ss_pred HHHHHhcCcCCCccEEEEcCe-------------EEEEecCCCCccccHHHHHhcCCcc-cHHHHHHHHHHhcchhHHhc
Q psy1503 133 LLHIILNELRISSGKVSLGGT-------------VSYASQEPWIFAATIRQNILFGLPY-LRRRYADVIRVCALQDDFDS 198 (265)
Q Consensus 133 Ll~~l~g~~~~~~G~i~~~g~-------------i~~v~Q~~~l~~~ti~eni~~~~~~-~~~~~~~~~~~~~l~~~i~~ 198 (265)
++++|.++++.++|+|.+||+ ||.||||..||+.||..||.|+++. .++++.++.+++++++.|..
T Consensus 580 imRlLfRffdv~sGsI~iDgqdIrnvt~~SLRs~IGVVPQDtvLFNdTI~yNIryak~~AsneevyaAAkAA~IHdrIl~ 659 (790)
T KOG0056|consen 580 IMRLLFRFFDVNSGSITIDGQDIRNVTQSSLRSSIGVVPQDTVLFNDTILYNIRYAKPSASNEEVYAAAKAAQIHDRILQ 659 (790)
T ss_pred HHHHHHHHhhccCceEEEcCchHHHHHHHHHHHhcCcccCcceeecceeeeheeecCCCCChHHHHHHHHHhhHHHHHhc
Confidence 999999999999999999994 9999999999999999999999864 56777888999999999999
Q ss_pred CCCCCccccCCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHHhhcC
Q psy1503 199 LPNGDFTVVGERGASLSGGQKARINLARAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGCLTSG 264 (265)
Q Consensus 199 l~~g~~t~vg~~g~~LSgGqrqRialARal~~~~~illLDEp~s~LD~~~~~~i~~~~i~~~l~~~ 264 (265)
+|+||+|.|||||-.||||+||||||||+++++|.|++|||+||+||.++++.| +.|+.++..++
T Consensus 660 fPegY~t~VGERGLkLSGGEKQRVAiARtiLK~P~iIlLDEATSALDT~tER~I-QaaL~rlca~R 724 (790)
T KOG0056|consen 660 FPEGYNTRVGERGLKLSGGEKQRVAIARTILKAPSIILLDEATSALDTNTERAI-QAALARLCANR 724 (790)
T ss_pred CchhhhhhhhhcccccCCcchhhHHHHHHHhcCCcEEEEcchhhhcCCccHHHH-HHHHHHHhcCC
Confidence 999999999999999999999999999999999999999999999999999998 88998888776
No 37
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=100.00 E-value=1.8e-46 Score=367.64 Aligned_cols=198 Identities=27% Similarity=0.387 Sum_probs=167.7
Q ss_pred HHHHHHHhcCCCCCCcCC-CCCCCCCCcEEEEeEEEEeCCCCCCcceeeceEEEcCCcEEEEEcCCCChHHHHHHHHhcC
Q psy1503 62 DRVLNFLLLGEHEPRKIN-SVHSNGKGHVSLDNVTAQWSLQNADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNE 140 (265)
Q Consensus 62 ~ri~~~l~~~~~~~~~~~-~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~g~ 140 (265)
+|+.++++.++....... .......+.++++|++|+|+.. .++++|+||+|++|++++|+||||||||||+++|+|+
T Consensus 307 ~ri~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~--~~~l~~i~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~ 384 (585)
T TIGR01192 307 EDFFDLEDSVFQREEPADAPELPNVKGAVEFRHITFEFANS--SQGVFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRV 384 (585)
T ss_pred HHHHHHHcCCccccCCccCCCCCCCCCeEEEEEEEEECCCC--CccccceeEEEcCCCEEEEECCCCCCHHHHHHHHccC
Confidence 788887765432111111 0111123469999999999642 4689999999999999999999999999999999999
Q ss_pred cCCCccEEEEcCe-------------EEEEecCCCCccccHHHHHhcCCc-ccHHHHHHHHHHhcchhHHhcCCCCCccc
Q psy1503 141 LRISSGKVSLGGT-------------VSYASQEPWIFAATIRQNILFGLP-YLRRRYADVIRVCALQDDFDSLPNGDFTV 206 (265)
Q Consensus 141 ~~~~~G~i~~~g~-------------i~~v~Q~~~l~~~ti~eni~~~~~-~~~~~~~~~~~~~~l~~~i~~l~~g~~t~ 206 (265)
++|++|+|.++|. ++|++|+|++|++|++|||.++.+ .+++++.++++.+++++.+..+|+|++|.
T Consensus 385 ~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~ti~~Ni~~~~~~~~~~~~~~a~~~~~~~~~i~~l~~g~~t~ 464 (585)
T TIGR01192 385 YDPTVGQILIDGIDINTVTRESLRKSIATVFQDAGLFNRSIRENIRLGREGATDEEVYEAAKAAAAHDFILKRSNGYDTL 464 (585)
T ss_pred CCCCCCEEEECCEEhhhCCHHHHHhheEEEccCCccCcccHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhccccccch
Confidence 9999999999983 899999999999999999999854 45667788889999999999999999999
Q ss_pred cCCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHHhh
Q psy1503 207 VGERGASLSGGQKARINLARAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGCLT 262 (265)
Q Consensus 207 vg~~g~~LSgGqrqRialARal~~~~~illLDEp~s~LD~~~~~~i~~~~i~~~l~ 262 (265)
+|++|.+||||||||++|||||+++|+++|||||||+||+.+++.+.+ .+..+.+
T Consensus 465 ~~~~~~~LSgGq~qrl~lARall~~p~ililDEpts~LD~~~~~~i~~-~l~~~~~ 519 (585)
T TIGR01192 465 VGERGNRLSGGERQRLAIARAILKNAPILVLDEATSALDVETEARVKN-AIDALRK 519 (585)
T ss_pred hcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHH-HHHHHhC
Confidence 999999999999999999999999999999999999999999998855 4444433
No 38
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=100.00 E-value=3.7e-47 Score=354.05 Aligned_cols=196 Identities=29% Similarity=0.420 Sum_probs=172.4
Q ss_pred HHHHHHHhcCCCCCCcCCCCCCCCCCcEEEEeEEEEeCCCCCCcceeeceEEEcCCcEEEEEcCCCChHHHHHHHHhcCc
Q psy1503 62 DRVLNFLLLGEHEPRKINSVHSNGKGHVSLDNVTAQWSLQNADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNEL 141 (265)
Q Consensus 62 ~ri~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~g~~ 141 (265)
+|+.++|...+...... ..+.+++.+.++++++.-|+ ..+++++++||++++|+.++||||||||||||.++|.|..
T Consensus 310 ~Rl~~lL~~~p~~~~~m--~LP~P~g~L~Ve~l~~~PPg-~~~pil~~isF~l~~G~~lgIIGPSgSGKSTLaR~lvG~w 386 (580)
T COG4618 310 KRLNELLAELPAAAERM--PLPAPQGALSVERLTAAPPG-QKKPILKGISFALQAGEALGIIGPSGSGKSTLARLLVGIW 386 (580)
T ss_pred HHHHHHHHhCccccCCC--CCCCCCceeeEeeeeecCCC-CCCcceecceeEecCCceEEEECCCCccHHHHHHHHHccc
Confidence 99999998654322211 12234678999999987654 4579999999999999999999999999999999999999
Q ss_pred CCCccEEEEcC-------------eEEEEecCCCCccccHHHHHh-cCCcccHHHHHHHHHHhcchhHHhcCCCCCcccc
Q psy1503 142 RISSGKVSLGG-------------TVSYASQEPWIFAATIRQNIL-FGLPYLRRRYADVIRVCALQDDFDSLPNGDFTVV 207 (265)
Q Consensus 142 ~~~~G~i~~~g-------------~i~~v~Q~~~l~~~ti~eni~-~~~~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~v 207 (265)
+|++|.|++|| +|||+||+..||+|||.|||. |+.+.+.+.+-++.+.++.|+.|-++|+||||.|
T Consensus 387 ~p~~G~VRLDga~l~qWd~e~lG~hiGYLPQdVeLF~GTIaeNIaRf~~~~d~~kIieAA~lAgvHelIl~lP~GYdT~i 466 (580)
T COG4618 387 PPTSGSVRLDGADLRQWDREQLGRHIGYLPQDVELFDGTIAENIARFGEEADPEKVIEAARLAGVHELILRLPQGYDTRI 466 (580)
T ss_pred ccCCCcEEecchhhhcCCHHHhccccCcCcccceecCCcHHHHHHhccccCCHHHHHHHHHHcChHHHHHhCcCCccCcc
Confidence 99999999998 399999999999999999998 6656778888889999999999999999999999
Q ss_pred CCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHHh
Q psy1503 208 GERGASLSGGQKARINLARAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGCL 261 (265)
Q Consensus 208 g~~g~~LSgGqrqRialARal~~~~~illLDEp~s~LD~~~~~~i~~~~i~~~l 261 (265)
|+.|..|||||||||+||||||.+|.+++||||-|+||.+-|..+.+ +|..+-
T Consensus 467 G~~G~~LSgGQRQRIaLARAlYG~P~lvVLDEPNsNLD~~GE~AL~~-Ai~~~k 519 (580)
T COG4618 467 GEGGATLSGGQRQRIALARALYGDPFLVVLDEPNSNLDSEGEAALAA-AILAAK 519 (580)
T ss_pred CCCCCCCCchHHHHHHHHHHHcCCCcEEEecCCCCCcchhHHHHHHH-HHHHHH
Confidence 99999999999999999999999999999999999999999988854 554443
No 39
>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.4e-46 Score=352.49 Aligned_cols=195 Identities=25% Similarity=0.402 Sum_probs=171.9
Q ss_pred HHHHHHHhcCCCCCCcCCCCCCCCCCcEEEEeEEEEeCCCCCCcceeeceEEEcCCcEEEEEcCCCChHHHHHHHHhcCc
Q psy1503 62 DRVLNFLLLGEHEPRKINSVHSNGKGHVSLDNVTAQWSLQNADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNEL 141 (265)
Q Consensus 62 ~ri~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~g~~ 141 (265)
.|+.+.++.++.........+.. ...++++|++|+|+++ ..++|+|+||++++||++||+|+||||||||+++|.|.+
T Consensus 311 ~Rl~~i~~q~~e~~~~~~~~~~~-~~~l~~~~vsF~y~~~-~~~~L~~~~l~l~~GEkvAIlG~SGsGKSTllqLl~~~~ 388 (573)
T COG4987 311 RRLNDILDQKPEVTFPDEQTATT-GQALELRNVSFTYPGQ-QTKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAW 388 (573)
T ss_pred HHHhhhccCCcccCCCccccCCc-cceeeeccceeecCCC-ccchhhccceeecCCCeEEEECCCCCCHHHHHHHHHhcc
Confidence 78887776554322221111111 1279999999999865 457999999999999999999999999999999999999
Q ss_pred CCCccEEEEcCe-------------EEEEecCCCCccccHHHHHhcCCcc-cHHHHHHHHHHhcchhHHhcCCCCCcccc
Q psy1503 142 RISSGKVSLGGT-------------VSYASQEPWIFAATIRQNILFGLPY-LRRRYADVIRVCALQDDFDSLPNGDFTVV 207 (265)
Q Consensus 142 ~~~~G~i~~~g~-------------i~~v~Q~~~l~~~ti~eni~~~~~~-~~~~~~~~~~~~~l~~~i~~l~~g~~t~v 207 (265)
+|++|+|+++|. +++++|.+.+|++|+|+|+.++.+. ++++++++++.++|++.+...|+|++|.+
T Consensus 389 ~~~~G~i~~~g~~~~~l~~~~~~e~i~vl~Qr~hlF~~Tlr~NL~lA~~~AsDEel~~aL~qvgL~~l~~~~p~gl~t~l 468 (573)
T COG4987 389 DPQQGSITLNGVEIASLDEQALRETISVLTQRVHLFSGTLRDNLRLANPDASDEELWAALQQVGLEKLLESAPDGLNTWL 468 (573)
T ss_pred CCCCCeeeECCcChhhCChhhHHHHHhhhccchHHHHHHHHHHHhhcCCCCCHHHHHHHHHHcCHHHHHHhChhhhhchh
Confidence 999999999993 8999999999999999999998764 67889999999999999999999999999
Q ss_pred CCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHH
Q psy1503 208 GERGASLSGGQKARINLARAVYKNADIYLLDDPLSAVDMHVGKHLFEDCIS 258 (265)
Q Consensus 208 g~~g~~LSgGqrqRialARal~~~~~illLDEp~s~LD~~~~~~i~~~~i~ 258 (265)
||.|..||||||||++|||+|++|++++||||||.|||+.|+++|++..+.
T Consensus 469 ge~G~~LSGGE~rRLAlAR~LL~dapl~lLDEPTegLD~~TE~~vL~ll~~ 519 (573)
T COG4987 469 GEGGRRLSGGERRRLALARALLHDAPLWLLDEPTEGLDPITERQVLALLFE 519 (573)
T ss_pred ccCCCcCCchHHHHHHHHHHHHcCCCeEEecCCcccCChhhHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999886553
No 40
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=100.00 E-value=2.2e-45 Score=389.74 Aligned_cols=176 Identities=23% Similarity=0.374 Sum_probs=162.2
Q ss_pred CCcEEEEeEEEEeCCCCCCcceeeceEEEcCCcEEEEEcCCCChHHHHHHHHhcCcCCCccEEEEcCe------------
Q psy1503 86 KGHVSLDNVTAQWSLQNADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSLGGT------------ 153 (265)
Q Consensus 86 ~~~i~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g~------------ 153 (265)
.+.|+|+||+|+|+.. .+++|+|+||+|++||.+||||+||||||||+++|+|+++ ++|+|.+||.
T Consensus 1215 ~g~I~f~nVs~~Y~~~-~~~vL~~is~~I~~GekvaIvGrSGsGKSTLl~lL~rl~~-~~G~I~IdG~di~~i~~~~lR~ 1292 (1490)
T TIGR01271 1215 GGQMDVQGLTAKYTEA-GRAVLQDLSFSVEGGQRVGLLGRTGSGKSTLLSALLRLLS-TEGEIQIDGVSWNSVTLQTWRK 1292 (1490)
T ss_pred CCeEEEEEEEEEeCCC-CcceeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC-CCcEEEECCEEcccCCHHHHHh
Confidence 4679999999999753 4679999999999999999999999999999999999997 8999999993
Q ss_pred -EEEEecCCCCccccHHHHHhcCCcccHHHHHHHHHHhcchhHHhcCCCCCccccCCCCCCCCHHHHHHHHHHHHHccCC
Q psy1503 154 -VSYASQEPWIFAATIRQNILFGLPYLRRRYADVIRVCALQDDFDSLPNGDFTVVGERGASLSGGQKARINLARAVYKNA 232 (265)
Q Consensus 154 -i~~v~Q~~~l~~~ti~eni~~~~~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~vg~~g~~LSgGqrqRialARal~~~~ 232 (265)
++|+||+|.+|++|||+||.....+++++++++++.|++.+.+..+|+|++|.|+++|.+||||||||++|||||+++|
T Consensus 1293 ~is~IpQdp~LF~GTIR~NLdp~~~~tdeei~~aL~~~~L~~~i~~lp~GLdt~v~e~G~nLSgGQrQrL~LARALLr~~ 1372 (1490)
T TIGR01271 1293 AFGVIPQKVFIFSGTFRKNLDPYEQWSDEEIWKVAEEVGLKSVIEQFPDKLDFVLVDGGYVLSNGHKQLMCLARSILSKA 1372 (1490)
T ss_pred ceEEEeCCCccCccCHHHHhCcccCCCHHHHHHHHHHCCCHHHHHhCccccccccccCCCcCCHHHHHHHHHHHHHhCCC
Confidence 9999999999999999999876667788999999999999999999999999999999999999999999999999999
Q ss_pred CEEEEeCCCCCcCHHHHHHHHHHHHHHHhhcC
Q psy1503 233 DIYLLDDPLSAVDMHVGKHLFEDCISGCLTSG 264 (265)
Q Consensus 233 ~illLDEp~s~LD~~~~~~i~~~~i~~~l~~~ 264 (265)
+|+|||||||+||..+++.| ++.+...++++
T Consensus 1373 ~ILlLDEaTS~lD~~Te~~I-~~~L~~~~~~~ 1403 (1490)
T TIGR01271 1373 KILLLDEPSAHLDPVTLQII-RKTLKQSFSNC 1403 (1490)
T ss_pred CEEEEeCCcccCCHHHHHHH-HHHHHHHcCCC
Confidence 99999999999999999888 55666655554
No 41
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=100.00 E-value=4.4e-44 Score=378.38 Aligned_cols=199 Identities=22% Similarity=0.359 Sum_probs=167.4
Q ss_pred HHHHHHHhcCCCCCCcCCCCCCCCCCcEEEEeEEEEeCCCCCCcceeeceEEEcCCcEEEEEcCCCChHHHHHHHHhcCc
Q psy1503 62 DRVLNFLLLGEHEPRKINSVHSNGKGHVSLDNVTAQWSLQNADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNEL 141 (265)
Q Consensus 62 ~ri~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~g~~ 141 (265)
+|+.++++.++..+........+....|+++||+|+|+.....++|+|+||+|++|+++||+||||||||||+++|+|++
T Consensus 356 ~ri~~ii~~~~~~~~~~~~~~~~~~~~I~~~nVsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~ 435 (1466)
T PTZ00265 356 NSLYEIINRKPLVENNDDGKKLKDIKKIQFKNVRFHYDTRKDVEIYKDLNFTLTEGKTYAFVGESGCGKSTILKLIERLY 435 (1466)
T ss_pred HHHHHHHcCCCCCCCCCCCccCCCCCcEEEEEEEEEcCCCCCCceeccceEEEcCCCEEEEECCCCCCHHHHHHHHHHhc
Confidence 99999987654321111111111123699999999997543347999999999999999999999999999999999999
Q ss_pred CCCccEEEEc-Ce-------------EEEEecCCCCccccHHHHHhcCCc------------------------------
Q psy1503 142 RISSGKVSLG-GT-------------VSYASQEPWIFAATIRQNILFGLP------------------------------ 177 (265)
Q Consensus 142 ~~~~G~i~~~-g~-------------i~~v~Q~~~l~~~ti~eni~~~~~------------------------------ 177 (265)
+|++|+|.++ |. |+||+|+|.+|++||+|||.+|..
T Consensus 436 ~p~~G~I~i~~g~~i~~~~~~~lr~~Ig~V~Q~~~LF~~TI~eNI~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 515 (1466)
T PTZ00265 436 DPTEGDIIINDSHNLKDINLKWWRSKIGVVSQDPLLFSNSIKNNIKYSLYSLKDLEALSNYYNEDGNDSQENKNKRNSCR 515 (1466)
T ss_pred cCCCCeEEEeCCcchhhCCHHHHHHhccEecccccchhccHHHHHHhcCCCccccchhcccccccccccccccccccccc
Confidence 9999999994 42 899999999999999999998731
Q ss_pred ----------------------------ccHHHHHHHHHHhcchhHHhcCCCCCccccCCCCCCCCHHHHHHHHHHHHHc
Q psy1503 178 ----------------------------YLRRRYADVIRVCALQDDFDSLPNGDFTVVGERGASLSGGQKARINLARAVY 229 (265)
Q Consensus 178 ----------------------------~~~~~~~~~~~~~~l~~~i~~l~~g~~t~vg~~g~~LSgGqrqRialARal~ 229 (265)
..++++.++++.+++++++..+|+|++|.+|++|.+|||||||||+|||||+
T Consensus 516 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~a~~~~~l~~~i~~lp~g~dT~vg~~g~~LSGGQkQRiaIARAll 595 (1466)
T PTZ00265 516 AKCAGDLNDMSNTTDSNELIEMRKNYQTIKDSEVVDVSKKVLIHDFVSALPDKYETLVGSNASKLSGGQKQRISIARAII 595 (1466)
T ss_pred ccccchhhhcccccchhhhhhcccccccCCHHHHHHHHHHhCcHHHHHhCccccCceeCCCCCcCCHHHHHHHHHHHHHh
Confidence 1235677888889999999999999999999999999999999999999999
Q ss_pred cCCCEEEEeCCCCCcCHHHHHHHHHHHHHHHh
Q psy1503 230 KNADIYLLDDPLSAVDMHVGKHLFEDCISGCL 261 (265)
Q Consensus 230 ~~~~illLDEp~s~LD~~~~~~i~~~~i~~~l 261 (265)
++|+|+|||||||+||+.++..|. +.+..+.
T Consensus 596 ~~P~ILlLDEpTSaLD~~se~~i~-~~L~~~~ 626 (1466)
T PTZ00265 596 RNPKILILDEATSSLDNKSEYLVQ-KTINNLK 626 (1466)
T ss_pred cCCCEEEEeCcccccCHHHHHHHH-HHHHHHh
Confidence 999999999999999999998874 4565554
No 42
>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter. This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.
Probab=100.00 E-value=5.6e-44 Score=348.18 Aligned_cols=166 Identities=19% Similarity=0.270 Sum_probs=149.5
Q ss_pred CcEEEEeEEEEeCCCC--CCcceeeceEEEcCCcEEEEEcCCCChHHHHHHHHhcCcCCCccEEEEcCe-----------
Q psy1503 87 GHVSLDNVTAQWSLQN--ADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSLGGT----------- 153 (265)
Q Consensus 87 ~~i~~~~~~~~~~~~~--~~~~l~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g~----------- 153 (265)
..|+++|++|+|++.. ..++|+|+||++++|++++|+||||||||||+++|+|+++|++|+|.++|.
T Consensus 336 ~~i~~~~v~f~y~~~~~~~~~~l~~vs~~i~~G~~~aivG~sGsGKSTl~~ll~g~~~p~~G~i~~~g~~i~~~~~~~~~ 415 (555)
T TIGR01194 336 DSIELKDVHMNPKAPEGSEGFALGPIDLRIAQGDIVFIVGENGCGKSTLAKLFCGLYIPQEGEILLDGAAVSADSRDDYR 415 (555)
T ss_pred ceEEEEEEEEEeCCCCCCcCceeccceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHH
Confidence 5699999999997431 236999999999999999999999999999999999999999999999983
Q ss_pred --EEEEecCCCCccccHHHHHhcCCcccHHHHHHHHHHhcchhHHhcCCCCCccccCCCCCCCCHHHHHHHHHHHHHccC
Q psy1503 154 --VSYASQEPWIFAATIRQNILFGLPYLRRRYADVIRVCALQDDFDSLPNGDFTVVGERGASLSGGQKARINLARAVYKN 231 (265)
Q Consensus 154 --i~~v~Q~~~l~~~ti~eni~~~~~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~vg~~g~~LSgGqrqRialARal~~~ 231 (265)
++|++|++++|++|+++|+ ....++++.+++++.+++++++..+|+|++|. .+|||||||||+||||++++
T Consensus 416 ~~i~~v~q~~~lf~~ti~~n~--~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~-----~~LSgGq~qRlalaRall~~ 488 (555)
T TIGR01194 416 DLFSAIFADFHLFDDLIGPDE--GEHASLDNAQQYLQRLEIADKVKIEDGGFSTT-----TALSTGQQKRLALICAWLED 488 (555)
T ss_pred hhCcEEccChhhhhhhhhccc--ccchhHHHHHHHHHHcCCchhhcccccccCCc-----ccCCHHHHHHHHHHHHHHcC
Confidence 8999999999999999995 22335667788999999999999999999984 78999999999999999999
Q ss_pred CCEEEEeCCCCCcCHHHHHHHHHHHHHH
Q psy1503 232 ADIYLLDDPLSAVDMHVGKHLFEDCISG 259 (265)
Q Consensus 232 ~~illLDEp~s~LD~~~~~~i~~~~i~~ 259 (265)
|+|+|||||||+||+++++++.+..+..
T Consensus 489 ~~ililDE~ts~LD~~~~~~i~~~l~~~ 516 (555)
T TIGR01194 489 RPILLFDEWAADQDPAFKRFFYEELLPD 516 (555)
T ss_pred CCEEEEeCCccCCCHHHHHHHHHHHHHH
Confidence 9999999999999999999997766543
No 43
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=8e-45 Score=307.96 Aligned_cols=158 Identities=25% Similarity=0.450 Sum_probs=137.4
Q ss_pred cEEEEeEEEEeCCCCCCcceeeceEEEcCCcEEEEEcCCCChHHHHHHHHhcCcCCCccEEEEcCe--------------
Q psy1503 88 HVSLDNVTAQWSLQNADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSLGGT-------------- 153 (265)
Q Consensus 88 ~i~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g~-------------- 153 (265)
.|+++|++++|+. ..+|++||++|++||+++|+|||||||||||++|.++.+|++|+|.++|.
T Consensus 2 mi~i~~l~K~fg~---~~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~~~~G~I~i~g~~~~~~~~~~~~R~~ 78 (240)
T COG1126 2 MIEIKNLSKSFGD---KEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVDGEDVGDKKDILKLRRK 78 (240)
T ss_pred eEEEEeeeEEeCC---eEEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcCCCCceEEECCEeccchhhHHHHHHh
Confidence 5899999999963 46999999999999999999999999999999999999999999999992
Q ss_pred EEEEecCCCCcc-ccHHHHHhcCCc----cc----HHHHHHHHHHhcchhHHhcCCCCCccccCCCCCCCCHHHHHHHHH
Q psy1503 154 VSYASQEPWIFA-ATIRQNILFGLP----YL----RRRYADVIRVCALQDDFDSLPNGDFTVVGERGASLSGGQKARINL 224 (265)
Q Consensus 154 i~~v~Q~~~l~~-~ti~eni~~~~~----~~----~~~~~~~~~~~~l~~~i~~l~~g~~t~vg~~g~~LSgGqrqRial 224 (265)
+|+|+|+..||+ .|+.||++++.. .. ++...+.++..+|.+..+..| .+|||||||||||
T Consensus 79 vGmVFQ~fnLFPHlTvleNv~lap~~v~~~~k~eA~~~A~~lL~~VGL~~ka~~yP-----------~qLSGGQqQRVAI 147 (240)
T COG1126 79 VGMVFQQFNLFPHLTVLENVTLAPVKVKKLSKAEAREKALELLEKVGLADKADAYP-----------AQLSGGQQQRVAI 147 (240)
T ss_pred cCeecccccccccchHHHHHHhhhHHHcCCCHHHHHHHHHHHHHHcCchhhhhhCc-----------cccCcHHHHHHHH
Confidence 789999999997 699999998742 11 233445667778877777666 5899999999999
Q ss_pred HHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHH
Q psy1503 225 ARAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGC 260 (265)
Q Consensus 225 ARal~~~~~illLDEp~s~LD~~~~~~i~~~~i~~~ 260 (265)
||||+.+|+++|+|||||||||+...++++ .+..+
T Consensus 148 ARALaM~P~vmLFDEPTSALDPElv~EVL~-vm~~L 182 (240)
T COG1126 148 ARALAMDPKVMLFDEPTSALDPELVGEVLD-VMKDL 182 (240)
T ss_pred HHHHcCCCCEEeecCCcccCCHHHHHHHHH-HHHHH
Confidence 999999999999999999999999998865 44444
No 44
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=7.9e-45 Score=314.89 Aligned_cols=159 Identities=26% Similarity=0.472 Sum_probs=140.5
Q ss_pred cEEEEeEEEEeCCCCCCcceeeceEEEcCCcEEEEEcCCCChHHHHHHHHhcCcCCCccEEEEcCe--------EEEEec
Q psy1503 88 HVSLDNVTAQWSLQNADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSLGGT--------VSYASQ 159 (265)
Q Consensus 88 ~i~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g~--------i~~v~Q 159 (265)
.+.+++++++|+. ..+|+|+||+|++||+++|+||||||||||+++|+|+.+|++|+|.++|. ++||+|
T Consensus 3 ~l~i~~v~~~f~~---~~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~p~~G~V~~~g~~v~~p~~~~~~vFQ 79 (248)
T COG1116 3 LLEIEGVSKSFGG---VEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEVLLDGRPVTGPGPDIGYVFQ 79 (248)
T ss_pred eEEEEeeEEEeCc---eEEeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCcccCCCCCCEEEEec
Confidence 5889999999964 56999999999999999999999999999999999999999999999984 899999
Q ss_pred CCCCcc-ccHHHHHhcCCcc-------cHHHHHHHHHHhcchhHHhcCCCCCccccCCCCCCCCHHHHHHHHHHHHHccC
Q psy1503 160 EPWIFA-ATIRQNILFGLPY-------LRRRYADVIRVCALQDDFDSLPNGDFTVVGERGASLSGGQKARINLARAVYKN 231 (265)
Q Consensus 160 ~~~l~~-~ti~eni~~~~~~-------~~~~~~~~~~~~~l~~~i~~l~~g~~t~vg~~g~~LSgGqrqRialARal~~~ 231 (265)
++.||+ .||+||+.++... ..++..+.++.++|..+-+..| .+||||||||+||||||+.+
T Consensus 80 ~~~LlPW~Tv~~NV~l~l~~~~~~~~e~~~~a~~~L~~VgL~~~~~~~P-----------~qLSGGMrQRVaiARAL~~~ 148 (248)
T COG1116 80 EDALLPWLTVLDNVALGLELRGKSKAEARERAKELLELVGLAGFEDKYP-----------HQLSGGMRQRVAIARALATR 148 (248)
T ss_pred cCcccchhhHHhhheehhhccccchHhHHHHHHHHHHHcCCcchhhcCc-----------cccChHHHHHHHHHHHHhcC
Confidence 999998 7999999998643 1235666777788877766666 58999999999999999999
Q ss_pred CCEEEEeCCCCCcCHHHHHHHHHHHHHHH
Q psy1503 232 ADIYLLDDPLSAVDMHVGKHLFEDCISGC 260 (265)
Q Consensus 232 ~~illLDEp~s~LD~~~~~~i~~~~i~~~ 260 (265)
|+|++|||||+|||+.|+.++.+..+.-+
T Consensus 149 P~lLLlDEPFgALDalTR~~lq~~l~~lw 177 (248)
T COG1116 149 PKLLLLDEPFGALDALTREELQDELLRLW 177 (248)
T ss_pred CCEEEEcCCcchhhHHHHHHHHHHHHHHH
Confidence 99999999999999999999866665433
No 45
>COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=8.3e-44 Score=325.48 Aligned_cols=176 Identities=31% Similarity=0.509 Sum_probs=164.0
Q ss_pred CCcEEEEeEEEEeCCCCCCcceeeceEEEcCCcEEEEEcCCCChHHHHHHHHhcCcCCCccEEEEcCe------------
Q psy1503 86 KGHVSLDNVTAQWSLQNADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSLGGT------------ 153 (265)
Q Consensus 86 ~~~i~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g~------------ 153 (265)
.+.+.|.|++|.|.+ .+++|+++||++++|+.+|||||+|+||||++++|.++|++++|.|.++|+
T Consensus 260 ~g~v~F~~V~F~y~~--~r~iL~~isf~i~~g~tvAiVg~SG~gKsTI~rllfRFyD~~sG~I~id~qdir~vtq~slR~ 337 (497)
T COG5265 260 LGAVAFINVSFAYDP--RRPILNGISFTIPLGKTVAIVGESGAGKSTILRLLFRFYDVNSGSITIDGQDIRDVTQQSLRR 337 (497)
T ss_pred cceEEEEEEEeeccc--cchhhcCccccccCccEEEEEeCCCCcHHHHHHHHHHHhCCcCceEEEcchhHHHhHHHHHHH
Confidence 467999999999975 478999999999999999999999999999999999999999999999995
Q ss_pred -EEEEecCCCCccccHHHHHhcCCcc-cHHHHHHHHHHhcchhHHhcCCCCCccccCCCCCCCCHHHHHHHHHHHHHccC
Q psy1503 154 -VSYASQEPWIFAATIRQNILFGLPY-LRRRYADVIRVCALQDDFDSLPNGDFTVVGERGASLSGGQKARINLARAVYKN 231 (265)
Q Consensus 154 -i~~v~Q~~~l~~~ti~eni~~~~~~-~~~~~~~~~~~~~l~~~i~~l~~g~~t~vg~~g~~LSgGqrqRialARal~~~ 231 (265)
||.|||+..||+.|+..||.+|.+. .+++...+.+++.+++.|..+|+|++|.|||+|-.||||+||||||||+++++
T Consensus 338 aIg~VPQDtvLFNDti~yni~ygr~~at~eev~aaa~~aqi~~fi~~lP~gy~t~VgerglklSggekqrvaiar~ilk~ 417 (497)
T COG5265 338 AIGIVPQDTVLFNDTIAYNIKYGRPDATAEEVGAAAEAAQIHDFIQSLPEGYDTGVGERGLKLSGGEKQRVAIARTILKN 417 (497)
T ss_pred HhCcCcccceehhhhHHHHHhccCccccHHHHHHHHHHhhhhHHHHhCchhhhcccchheeeccCchHHHHHHHHHHhcC
Confidence 9999999999999999999999875 46777889999999999999999999999999999999999999999999999
Q ss_pred CCEEEEeCCCCCcCHHHHHHHHHHHHHHHhhcC
Q psy1503 232 ADIYLLDDPLSAVDMHVGKHLFEDCISGCLTSG 264 (265)
Q Consensus 232 ~~illLDEp~s~LD~~~~~~i~~~~i~~~l~~~ 264 (265)
|+|++|||+||+||.+|++.| +..++...+++
T Consensus 418 p~il~~deatsaldt~te~~i-q~~l~~~~~~r 449 (497)
T COG5265 418 PPILILDEATSALDTHTEQAI-QAALREVSAGR 449 (497)
T ss_pred CCEEEEehhhhHhhhhHHHHH-HHHHHHHhCCC
Confidence 999999999999999999998 66776665554
No 46
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=100.00 E-value=2.8e-43 Score=301.74 Aligned_cols=173 Identities=53% Similarity=0.957 Sum_probs=155.3
Q ss_pred EEEEeEEEEeCCCCC--CcceeeceEEEcCCcEEEEEcCCCChHHHHHHHHhcCcCCCccEEEEcCeEEEEecCCCCccc
Q psy1503 89 VSLDNVTAQWSLQNA--DLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSLGGTVSYASQEPWIFAA 166 (265)
Q Consensus 89 i~~~~~~~~~~~~~~--~~~l~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g~i~~v~Q~~~l~~~ 166 (265)
++++|++++|+.... .++++++||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.++|++|+|.+|+.
T Consensus 1 l~~~~l~~~~~~~~~~~~~il~~~s~~i~~G~~~~i~G~nG~GKSTLl~~i~G~~~~~~G~i~~~g~i~~~~q~~~l~~~ 80 (204)
T cd03250 1 ISVEDASFTWDSGEQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSGSVSVPGSIAYVSQEPWIQNG 80 (204)
T ss_pred CEEeEEEEecCCCCccccceeeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCcCCCCCCeEEEcCEEEEEecCchhccC
Confidence 478999999964211 369999999999999999999999999999999999999999999999999999999999999
Q ss_pred cHHHHHhcCCcccHHHHHHHHHHhcchhHHhcCCCCCccccCCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCcCH
Q psy1503 167 TIRQNILFGLPYLRRRYADVIRVCALQDDFDSLPNGDFTVVGERGASLSGGQKARINLARAVYKNADIYLLDDPLSAVDM 246 (265)
Q Consensus 167 ti~eni~~~~~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~vg~~g~~LSgGqrqRialARal~~~~~illLDEp~s~LD~ 246 (265)
|++||+.++.....++..++.+.+++.+.+..+|.++++.+.+++.+||+|||||++||||++.+|+++||||||++||+
T Consensus 81 t~~enl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~lS~G~~qrv~laral~~~p~llllDEP~~~LD~ 160 (204)
T cd03250 81 TIRENILFGKPFDEERYEKVIKACALEPDLEILPDGDLTEIGEKGINLSGGQKQRISLARAVYSDADIYLLDDPLSAVDA 160 (204)
T ss_pred cHHHHhccCCCcCHHHHHHHHHHcCcHHHHHhccCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCH
Confidence 99999998755544556677778888889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHh
Q psy1503 247 HVGKHLFEDCISGCL 261 (265)
Q Consensus 247 ~~~~~i~~~~i~~~l 261 (265)
.+.+.+++.++....
T Consensus 161 ~~~~~l~~~ll~~~~ 175 (204)
T cd03250 161 HVGRHIFENCILGLL 175 (204)
T ss_pred HHHHHHHHHHHHHhc
Confidence 999988876665443
No 47
>KOG0054|consensus
Probab=100.00 E-value=2.6e-42 Score=355.37 Aligned_cols=205 Identities=27% Similarity=0.434 Sum_probs=181.5
Q ss_pred CCCHHHHHHHHhcCCCCCCcC----CCCCCCCCCcEEEEeEEEEeCCCCCCcceeeceEEEcCCcEEEEEcCCCChHHHH
Q psy1503 58 RLSTDRVLNFLLLGEHEPRKI----NSVHSNGKGHVSLDNVTAQWSLQNADLTLNAVSITFKPKQLACIIGAIGAGKTSL 133 (265)
Q Consensus 58 ~l~~~ri~~~l~~~~~~~~~~----~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~ivG~~GsGKSTL 133 (265)
..+.+|+.+|.+.+++.+... ++...+..+.|+|+|++.+|.+. .++||+||||+|++||.+||||++|||||||
T Consensus 1104 m~SVERv~eY~~~~~E~p~~~~~~~pp~~WP~~G~I~f~~~~~RYrp~-lp~VLk~is~~I~p~eKVGIVGRTGaGKSSL 1182 (1381)
T KOG0054|consen 1104 MVSVERVLEYTDIPSEAPLEIEESRPPPSWPSKGEIEFEDLSLRYRPN-LPLVLKGISFTIKPGEKVGIVGRTGAGKSSL 1182 (1381)
T ss_pred chhhhHHHHHhcCCCCCCCCCcCCCCCCCCCCCCeEEEEEeEEEeCCC-CcchhcCceEEEcCCceEEEeCCCCCCHHHH
Confidence 344499999998664322111 12234467899999999999754 4689999999999999999999999999999
Q ss_pred HHHHhcCcCCCccEEEEcCe-------------EEEEecCCCCccccHHHHHhcCCcccHHHHHHHHHHhcchhHHhcCC
Q psy1503 134 LHIILNELRISSGKVSLGGT-------------VSYASQEPWIFAATIRQNILFGLPYLRRRYADVIRVCALQDDFDSLP 200 (265)
Q Consensus 134 l~~l~g~~~~~~G~i~~~g~-------------i~~v~Q~~~l~~~ti~eni~~~~~~~~~~~~~~~~~~~l~~~i~~l~ 200 (265)
+++|.|+.+|.+|+|.+||. ++.+||||.||+||+|.|+.-..++.+++++++++.|.|.+.+.++|
T Consensus 1183 ~~aLFRl~e~~~G~I~IDgvdI~~igL~dLRsrlsIIPQdPvLFsGTvR~NLDPf~e~sD~~IW~ALe~~~Lk~~v~~~p 1262 (1381)
T KOG0054|consen 1183 ILALFRLVEPAEGEILIDGVDISKIGLHDLRSRLSIIPQDPVLFSGTVRFNLDPFDEYSDDEIWEALERCQLKDVVSSLP 1262 (1381)
T ss_pred HHHHHHhcCccCCeEEEcCeecccccHHHHHhcCeeeCCCCceecCccccccCcccccCHHHHHHHHHHhChHHHHhhCC
Confidence 99999999999999999993 99999999999999999998767788899999999999999999999
Q ss_pred CCCccccCCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHHhhcC
Q psy1503 201 NGDFTVVGERGASLSGGQKARINLARAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGCLTSG 264 (265)
Q Consensus 201 ~g~~t~vg~~g~~LSgGqrqRialARal~~~~~illLDEp~s~LD~~~~~~i~~~~i~~~l~~~ 264 (265)
.|+++.|.|+|.|+|-||||.++|||||+++++|++|||+|+++|++|-..| |+.|+.-+++.
T Consensus 1263 ~~Ld~~v~egG~N~SvGQRQLlCLARALLr~skILvLDEATAsVD~~TD~lI-Q~tIR~~F~dc 1325 (1381)
T KOG0054|consen 1263 GGLDSEVSEGGENFSVGQRQLLCLARALLRKSKILVLDEATASVDPETDALI-QKTIREEFKDC 1325 (1381)
T ss_pred cCCCceecCCCccCChHHHHHHHHHHHHhccCCEEEEecccccCChHHHHHH-HHHHHHHhcCC
Confidence 9999999999999999999999999999999999999999999999997554 88887777664
No 48
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional
Probab=100.00 E-value=4.8e-42 Score=333.99 Aligned_cols=184 Identities=21% Similarity=0.285 Sum_probs=146.2
Q ss_pred HHHHHHHhcCCCCCCcCCCCCCCCCCcEEEEeEEEEeCCCCCCcceeeceEEEcCCcEEEEEcCCCChHHHHHHHHhcCc
Q psy1503 62 DRVLNFLLLGEHEPRKINSVHSNGKGHVSLDNVTAQWSLQNADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNEL 141 (265)
Q Consensus 62 ~ri~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~g~~ 141 (265)
+|+.+++..++.++... ..+.+..+.++++|++|+|+. ..++|+|+||+|++|++++|+||||||||||+++|+|++
T Consensus 297 ~ri~~l~~~~~~~~~~~-~~~~~~~~~i~~~~v~f~y~~--~~~~l~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~ 373 (547)
T PRK10522 297 NKLNKLALAPYKAEFPR-PQAFPDWQTLELRNVTFAYQD--NGFSVGPINLTIKRGELLFLIGGNGSGKSTLAMLLTGLY 373 (547)
T ss_pred HHHHHHhcccccccccc-ccccCcCceEEEEEEEEEeCC--CCeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 89998875443211111 111111246999999999973 346999999999999999999999999999999999999
Q ss_pred CCCccEEEEcCe-------------EEEEecCCCCccccHHHHHhcCCcccHHHHHHHHHHhcchhHHhcCCCCCccccC
Q psy1503 142 RISSGKVSLGGT-------------VSYASQEPWIFAATIRQNILFGLPYLRRRYADVIRVCALQDDFDSLPNGDFTVVG 208 (265)
Q Consensus 142 ~~~~G~i~~~g~-------------i~~v~Q~~~l~~~ti~eni~~~~~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~vg 208 (265)
+|++|+|.++|. ++|++|++++|++|+++| +...+++++.++++.+++..++.. +++.
T Consensus 374 ~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~ti~~n---~~~~~~~~~~~~~~~~~l~~~~~~-~~~~----- 444 (547)
T PRK10522 374 QPQSGEILLDGKPVTAEQPEDYRKLFSAVFTDFHLFDQLLGPE---GKPANPALVEKWLERLKMAHKLEL-EDGR----- 444 (547)
T ss_pred CCCCeEEEECCEECCCCCHHHHhhheEEEecChhHHHHhhccc---cCchHHHHHHHHHHHcCCchhhhc-cccC-----
Confidence 999999999983 999999999999999999 333445566666766666554432 2221
Q ss_pred CCCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHH
Q psy1503 209 ERGASLSGGQKARINLARAVYKNADIYLLDDPLSAVDMHVGKHLFEDCI 257 (265)
Q Consensus 209 ~~g~~LSgGqrqRialARal~~~~~illLDEp~s~LD~~~~~~i~~~~i 257 (265)
.+|.+||||||||++||||++++|+++|||||||+||+++++.+.+...
T Consensus 445 ~~G~~LSgGq~qRl~lARal~~~~~ililDE~ts~LD~~~~~~i~~~l~ 493 (547)
T PRK10522 445 ISNLKLSKGQKKRLALLLALAEERDILLLDEWAADQDPHFRREFYQVLL 493 (547)
T ss_pred CCCCCCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHH
Confidence 1478999999999999999999999999999999999999998866443
No 49
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=100.00 E-value=8.2e-43 Score=317.20 Aligned_cols=154 Identities=28% Similarity=0.535 Sum_probs=139.0
Q ss_pred cEEEEeEEEEeCCCCCCcceeeceEEEcCCcEEEEEcCCCChHHHHHHHHhcCcCCCccEEEEcCe-----------EEE
Q psy1503 88 HVSLDNVTAQWSLQNADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSLGGT-----------VSY 156 (265)
Q Consensus 88 ~i~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g~-----------i~~ 156 (265)
.|+++|++++|+.. . +++++||+|++||+++|+|||||||||||++|+|+.+|++|+|.++|. ||+
T Consensus 3 ~i~l~~v~K~yg~~--~-~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~~~~G~I~i~g~~vt~l~P~~R~iam 79 (338)
T COG3839 3 ELELKNVRKSFGSF--E-VLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEILIDGRDVTDLPPEKRGIAM 79 (338)
T ss_pred EEEEeeeEEEcCCc--e-eeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhHCCEEE
Confidence 58999999999642 2 899999999999999999999999999999999999999999999994 999
Q ss_pred EecCCCCcc-ccHHHHHhcCCcc-------cHHHHHHHHHHhcchhHHhcCCCCCccccCCCCCCCCHHHHHHHHHHHHH
Q psy1503 157 ASQEPWIFA-ATIRQNILFGLPY-------LRRRYADVIRVCALQDDFDSLPNGDFTVVGERGASLSGGQKARINLARAV 228 (265)
Q Consensus 157 v~Q~~~l~~-~ti~eni~~~~~~-------~~~~~~~~~~~~~l~~~i~~l~~g~~t~vg~~g~~LSgGqrqRialARal 228 (265)
|+|+..||+ .||+|||.|+... .++++.++.+..++.+.+++.| .+|||||||||||||||
T Consensus 80 VFQ~yALyPhmtV~~Niaf~Lk~~~~~k~ei~~rV~eva~~L~l~~lL~r~P-----------~~LSGGQrQRVAlaRAl 148 (338)
T COG3839 80 VFQNYALYPHMTVYENIAFGLKLRGVPKAEIDKRVKEVAKLLGLEHLLNRKP-----------LQLSGGQRQRVALARAL 148 (338)
T ss_pred EeCCccccCCCcHHHHhhhhhhhCCCchHHHHHHHHHHHHHcCChhHHhcCc-----------ccCChhhHHHHHHHHHH
Confidence 999999997 5999999998643 2456778888888888887766 58999999999999999
Q ss_pred ccCCCEEEEeCCCCCcCHHHHHHHHHH
Q psy1503 229 YKNADIYLLDDPLSAVDMHVGKHLFED 255 (265)
Q Consensus 229 ~~~~~illLDEp~s~LD~~~~~~i~~~ 255 (265)
+++|+++|||||+|+||++.+..+..+
T Consensus 149 Vr~P~v~L~DEPlSnLDa~lR~~mr~e 175 (338)
T COG3839 149 VRKPKVFLLDEPLSNLDAKLRVLMRSE 175 (338)
T ss_pred hcCCCEEEecCchhHhhHHHHHHHHHH
Confidence 999999999999999999998887554
No 50
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.2e-42 Score=293.95 Aligned_cols=164 Identities=25% Similarity=0.422 Sum_probs=142.0
Q ss_pred CcEEEEeEEEEeCCCCCCcceeeceEEEcCCcEEEEEcCCCChHHHHHHHHhcCcCCCc-----cEEEEcCe--------
Q psy1503 87 GHVSLDNVTAQWSLQNADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISS-----GKVSLGGT-------- 153 (265)
Q Consensus 87 ~~i~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~-----G~i~~~g~-------- 153 (265)
..++++|+++.|+. +.+|+|||++|++++++|++|||||||||||+++.++.+..+ |+|.++|+
T Consensus 6 ~~~~~~~l~~yYg~---~~aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g~ni~~~~~d 82 (253)
T COG1117 6 PAIEVRDLNLYYGD---KHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYDPKVD 82 (253)
T ss_pred ceeEecceeEEECc---hhhhccCceeccCCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECCeeccCCCCC
Confidence 46899999999973 468999999999999999999999999999999999998876 99999984
Q ss_pred -------EEEEecCCCCccccHHHHHhcCCcc-------cHHHHHHHHHHhcchhHHhcCCCCCccccCCCCCCCCHHHH
Q psy1503 154 -------VSYASQEPWIFAATIRQNILFGLPY-------LRRRYADVIRVCALQDDFDSLPNGDFTVVGERGASLSGGQK 219 (265)
Q Consensus 154 -------i~~v~Q~~~l~~~ti~eni~~~~~~-------~~~~~~~~~~~~~l~~~i~~l~~g~~t~vg~~g~~LSgGqr 219 (265)
||+|+|.|.-|+.||.|||.||... -++.+++.++.++|.+.+.. .+.+.+..|||||+
T Consensus 83 ~~~lRr~vGMVFQkPnPFp~SIydNVayG~r~~g~~~~~ldeiVe~sLk~AaLWdEVKD-------rL~~sa~~LSGGQQ 155 (253)
T COG1117 83 VVELRRRVGMVFQKPNPFPMSIYDNVAYGLRLHGIKDKELDEIVESSLKKAALWDEVKD-------RLHKSALGLSGGQQ 155 (253)
T ss_pred HHHHHHHheeeccCCCCCCchHHHHHHHhHHhhccchHHHHHHHHHHHHHhHhHHHhHH-------HhhCCccCCChhHH
Confidence 9999999999999999999998532 13446677788888876642 23456788999999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHHh
Q psy1503 220 ARINLARAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGCL 261 (265)
Q Consensus 220 qRialARal~~~~~illLDEp~s~LD~~~~~~i~~~~i~~~l 261 (265)
||++|||||+-+|+|+|||||||+||+.+..+| ++.|..+-
T Consensus 156 QRLcIARalAv~PeVlLmDEPtSALDPIsT~kI-EeLi~eLk 196 (253)
T COG1117 156 QRLCIARALAVKPEVLLMDEPTSALDPISTLKI-EELITELK 196 (253)
T ss_pred HHHHHHHHHhcCCcEEEecCcccccCchhHHHH-HHHHHHHH
Confidence 999999999999999999999999999999988 66776554
No 51
>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.5e-42 Score=314.86 Aligned_cols=192 Identities=22% Similarity=0.328 Sum_probs=152.0
Q ss_pred HHHHHHHhcCCCCCCcCCCCCCCCCCcEEEEeEEEEeCCCCCCcceeeceEEEcCCcEEEEEcCCCChHHHHHHHHhcCc
Q psy1503 62 DRVLNFLLLGEHEPRKINSVHSNGKGHVSLDNVTAQWSLQNADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNEL 141 (265)
Q Consensus 62 ~ri~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~g~~ 141 (265)
.|+..|+..++.++... ....+..+.|+++|++++|+.. ..++|+|+||+|++|++++|+||||||||||+++|+|++
T Consensus 55 ~~~~~~~~~~~~~~~~~-~~~~~~~~~i~~~nls~~y~~~-~~~~L~~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~ 132 (329)
T PRK14257 55 AELKQFLNKKKTQVDLL-KEDFNHANVFEIRNFNFWYMNR-TKHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLN 132 (329)
T ss_pred hhhhhcccccccccccc-cCCCCcCceEEEEeeEEEecCC-CceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccc
Confidence 67777766543221100 0112334689999999999642 356999999999999999999999999999999999999
Q ss_pred C-----CCccEEEEcC---------------eEEEEecCCCCccccHHHHHhcCCcc---c-HH----HHHHHHHHhcch
Q psy1503 142 R-----ISSGKVSLGG---------------TVSYASQEPWIFAATIRQNILFGLPY---L-RR----RYADVIRVCALQ 193 (265)
Q Consensus 142 ~-----~~~G~i~~~g---------------~i~~v~Q~~~l~~~ti~eni~~~~~~---~-~~----~~~~~~~~~~l~ 193 (265)
+ |++|+|.++| .++|+||+||+|++|++|||.|+..+ . .+ .+.++++.|++.
T Consensus 133 ~~~~~~p~~G~I~idG~~i~~~~~~~~~lr~~i~~v~q~~~~~~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~~L~ 212 (329)
T PRK14257 133 DLIEGTSHEGEIYFLGTNTRSKKISSLELRTRIGMVFQKPTPFEMSIFDNVAYGPRNNGINDRKILEKIVEKSLKSAALW 212 (329)
T ss_pred cccCCCCCceEEEECCEEccccccchHhhhccEEEEecCCccCCCcHHHHHHhHHHhcCCChHHHHHHHHHHHHHHcCCc
Confidence 6 5799998866 28999999999999999999976421 1 21 244556666654
Q ss_pred hHHhcCCCCCccccCCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHHhhc
Q psy1503 194 DDFDSLPNGDFTVVGERGASLSGGQKARINLARAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGCLTS 263 (265)
Q Consensus 194 ~~i~~l~~g~~t~vg~~g~~LSgGqrqRialARal~~~~~illLDEp~s~LD~~~~~~i~~~~i~~~l~~ 263 (265)
++ .++.+++++.+|||||||||+||||++++|+|+||||||++||+.+...+ .++|..+.++
T Consensus 213 ~~-------l~~~~~~~~~~LSgGqkqRl~LARAl~~~p~IlLLDEPts~LD~~~~~~i-~~~i~~l~~~ 274 (329)
T PRK14257 213 DE-------VKDDLDKAGNALSGGQQQRLCIARAIALEPEVLLMDEPTSALDPIATAKI-EELILELKKK 274 (329)
T ss_pred ch-------hhhhhhCCcccCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHH-HHHHHHHhcC
Confidence 33 34678899999999999999999999999999999999999999999885 6688777654
No 52
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=100.00 E-value=5.7e-42 Score=307.00 Aligned_cols=170 Identities=25% Similarity=0.387 Sum_probs=152.8
Q ss_pred cEEEEeEEEEeCCCCCCcceeeceEEEcCCcEEEEEcCCCChHHHHHHHHhcCcCCCccEEEEcCe-------------E
Q psy1503 88 HVSLDNVTAQWSLQNADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSLGGT-------------V 154 (265)
Q Consensus 88 ~i~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g~-------------i 154 (265)
.|+++|++++|+.. ..++|+|+||+|++||+++|+||||||||||+++|.|+++ ++|+|.++|. +
T Consensus 2 ~i~~~nls~~~~~~-~~~~l~~isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~~-~~G~I~i~g~~i~~~~~~~lr~~i 79 (275)
T cd03289 2 QMTVKDLTAKYTEG-GNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGDIQIDGVSWNSVPLQKWRKAF 79 (275)
T ss_pred eEEEEEEEEEeCCC-CCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC-CCcEEEECCEEhhhCCHHHHhhhE
Confidence 58999999999632 3469999999999999999999999999999999999998 7899999982 8
Q ss_pred EEEecCCCCccccHHHHHhcCCcccHHHHHHHHHHhcchhHHhcCCCCCccccCCCCCCCCHHHHHHHHHHHHHccCCCE
Q psy1503 155 SYASQEPWIFAATIRQNILFGLPYLRRRYADVIRVCALQDDFDSLPNGDFTVVGERGASLSGGQKARINLARAVYKNADI 234 (265)
Q Consensus 155 ~~v~Q~~~l~~~ti~eni~~~~~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~vg~~g~~LSgGqrqRialARal~~~~~i 234 (265)
+|+||++++|++|+++|+........++++++++.+++...+..+|.++++.+++.|.+||||||||++||||++++|+|
T Consensus 80 ~~v~q~~~lf~~tv~~nl~~~~~~~~~~~~~~l~~~gL~~~~~~~p~~l~~~~~~~g~~LS~G~~qrl~LaRall~~p~i 159 (275)
T cd03289 80 GVIPQKVFIFSGTFRKNLDPYGKWSDEEIWKVAEEVGLKSVIEQFPGQLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKI 159 (275)
T ss_pred EEECCCcccchhhHHHHhhhccCCCHHHHHHHHHHcCCHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhcCCCE
Confidence 99999999999999999974333456678888999999999999999999999999999999999999999999999999
Q ss_pred EEEeCCCCCcCHHHHHHHHHHHHHHH
Q psy1503 235 YLLDDPLSAVDMHVGKHLFEDCISGC 260 (265)
Q Consensus 235 llLDEp~s~LD~~~~~~i~~~~i~~~ 260 (265)
+||||||++||+.+...+.+ .+...
T Consensus 160 lllDEpts~LD~~~~~~l~~-~l~~~ 184 (275)
T cd03289 160 LLLDEPSAHLDPITYQVIRK-TLKQA 184 (275)
T ss_pred EEEECccccCCHHHHHHHHH-HHHHh
Confidence 99999999999999887644 44443
No 53
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=4.9e-42 Score=300.48 Aligned_cols=160 Identities=29% Similarity=0.503 Sum_probs=137.2
Q ss_pred CcEEEEeEEEEeCCCCCCcceeeceEEEcCCcEEEEEcCCCChHHHHHHHHhcCcCCCccEEEEcC----------eEEE
Q psy1503 87 GHVSLDNVTAQWSLQNADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSLGG----------TVSY 156 (265)
Q Consensus 87 ~~i~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g----------~i~~ 156 (265)
..|+++|++++|++ . ++|+||||++++|++++|+||||||||||+|+|+|+++|++|+|.+.| +|||
T Consensus 3 ~~i~v~nl~v~y~~--~-~vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~~~~~~IgY 79 (254)
T COG1121 3 PMIEVENLTVSYGN--R-PVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRKRLRIGY 79 (254)
T ss_pred cEEEEeeeEEEECC--E-eeeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEccccccccccCCeEEE
Confidence 36899999999964 2 599999999999999999999999999999999999999999999876 3999
Q ss_pred EecC---CCCccccHHHHHhcCCcc-----------cHHHHHHHHHHhcchhHHhcCCCCCccccCCCCCCCCHHHHHHH
Q psy1503 157 ASQE---PWIFAATIRQNILFGLPY-----------LRRRYADVIRVCALQDDFDSLPNGDFTVVGERGASLSGGQKARI 222 (265)
Q Consensus 157 v~Q~---~~l~~~ti~eni~~~~~~-----------~~~~~~~~~~~~~l~~~i~~l~~g~~t~vg~~g~~LSgGqrqRi 222 (265)
|||. .|-|+.||+|-+.+|... +.+.+.++++..++.+..+ .+...|||||+||+
T Consensus 80 VPQ~~~~d~~fP~tV~d~V~~g~~~~~g~~~~~~~~d~~~v~~aL~~Vgm~~~~~-----------r~i~~LSGGQ~QRV 148 (254)
T COG1121 80 VPQKSSVDRSFPITVKDVVLLGRYGKKGWFRRLNKKDKEKVDEALERVGMEDLRD-----------RQIGELSGGQKQRV 148 (254)
T ss_pred cCcccccCCCCCcCHHHHHHccCcccccccccccHHHHHHHHHHHHHcCchhhhC-----------CcccccCcHHHHHH
Confidence 9995 477899999999987421 2356777888888775433 33468999999999
Q ss_pred HHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHHh
Q psy1503 223 NLARAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGCL 261 (265)
Q Consensus 223 alARal~~~~~illLDEp~s~LD~~~~~~i~~~~i~~~l 261 (265)
.|||||+++|++++|||||+|+|+.++..|++ .+..+-
T Consensus 149 ~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~-lL~~l~ 186 (254)
T COG1121 149 LLARALAQNPDLLLLDEPFTGVDVAGQKEIYD-LLKELR 186 (254)
T ss_pred HHHHHhccCCCEEEecCCcccCCHHHHHHHHH-HHHHHH
Confidence 99999999999999999999999999999876 444443
No 54
>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei.
Probab=100.00 E-value=1e-40 Score=330.75 Aligned_cols=165 Identities=22% Similarity=0.361 Sum_probs=148.3
Q ss_pred CcEEEEeEEEEeCCCCCCcceeeceEEEcCCcEEEEEcCCCChHHHHHHHHhcCcCCCccEEEEcC--eEEEEecCCCCc
Q psy1503 87 GHVSLDNVTAQWSLQNADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSLGG--TVSYASQEPWIF 164 (265)
Q Consensus 87 ~~i~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g--~i~~v~Q~~~l~ 164 (265)
+.|+++|++|+|+. ++++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.+++ .++|++|+|++|
T Consensus 450 ~~i~~~nv~~~~~~--~~~il~~isl~i~~Ge~~~IvG~nGsGKSTLl~lL~Gl~~~~~G~i~~~~~~~i~~v~Q~~~l~ 527 (659)
T TIGR00954 450 NGIKFENIPLVTPN--GDVLIESLSFEVPSGNHLLICGPNGCGKSSLFRILGELWPVYGGRLTKPAKGKLFYVPQRPYMT 527 (659)
T ss_pred CeEEEEeeEEECCC--CCeeeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEeecCCCcEEEECCCCCCC
Confidence 46999999999963 24699999999999999999999999999999999999999999999875 599999999999
Q ss_pred cccHHHHHhcCCc--------ccHHHHHHHHHHhcchhHHhcCCCCCccccCCCCCCCCHHHHHHHHHHHHHccCCCEEE
Q psy1503 165 AATIRQNILFGLP--------YLRRRYADVIRVCALQDDFDSLPNGDFTVVGERGASLSGGQKARINLARAVYKNADIYL 236 (265)
Q Consensus 165 ~~ti~eni~~~~~--------~~~~~~~~~~~~~~l~~~i~~l~~g~~t~vg~~g~~LSgGqrqRialARal~~~~~ill 236 (265)
++|++|||.++.. ..++++.++++.+++.+.++. |.|++|..+ .+.+||||||||++||||++++|+++|
T Consensus 528 ~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~-~~g~~~~~~-~~~~LSgGqkQRl~iARal~~~p~ill 605 (659)
T TIGR00954 528 LGTLRDQIIYPDSSEDMKRRGLSDKDLEQILDNVQLTHILER-EGGWSAVQD-WMDVLSGGEKQRIAMARLFYHKPQFAI 605 (659)
T ss_pred CcCHHHHHhcCCChhhhhccCCCHHHHHHHHHHcCCHHHHhh-cCCcccccc-cccCCCHHHHHHHHHHHHHHcCCCEEE
Confidence 9999999998641 235567788999999888877 889999876 567999999999999999999999999
Q ss_pred EeCCCCCcCHHHHHHHHHH
Q psy1503 237 LDDPLSAVDMHVGKHLFED 255 (265)
Q Consensus 237 LDEp~s~LD~~~~~~i~~~ 255 (265)
||||||+||+.+++.+.+.
T Consensus 606 LDEpts~LD~~~~~~l~~~ 624 (659)
T TIGR00954 606 LDECTSAVSVDVEGYMYRL 624 (659)
T ss_pred EeCCccCCCHHHHHHHHHH
Confidence 9999999999999988654
No 55
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=100.00 E-value=1.3e-41 Score=293.67 Aligned_cols=158 Identities=27% Similarity=0.451 Sum_probs=131.7
Q ss_pred EEEEeEEEEeCCCC-CCcceeeceEEEcCCcEEEEEcCCCChHHHHHHHHhcCcCCCccEEEEcCe--------------
Q psy1503 89 VSLDNVTAQWSLQN-ADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSLGGT-------------- 153 (265)
Q Consensus 89 i~~~~~~~~~~~~~-~~~~l~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g~-------------- 153 (265)
++++|+++.|.... ...+|+++||+|++||+++|+|||||||||||++|.|+..|++|.|.++|.
T Consensus 2 i~~~~v~k~y~~~~~~~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~pt~G~v~i~g~d~~~l~~~~~~~~R 81 (226)
T COG1136 2 IELKNVSKIYGLGGEKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGEVLINGKDLTKLSEKELAKLR 81 (226)
T ss_pred cEEeeeEEEeccCCcceEecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEcCcCCHHHHHHHH
Confidence 57899999996431 246899999999999999999999999999999999999999999999983
Q ss_pred ---EEEEecCCCCcc-ccHHHHHhcCCc----c---cHHHHHHHHHHhcchhHHhcCCCCCccccCCCCCCCCHHHHHHH
Q psy1503 154 ---VSYASQEPWIFA-ATIRQNILFGLP----Y---LRRRYADVIRVCALQDDFDSLPNGDFTVVGERGASLSGGQKARI 222 (265)
Q Consensus 154 ---i~~v~Q~~~l~~-~ti~eni~~~~~----~---~~~~~~~~~~~~~l~~~i~~l~~g~~t~vg~~g~~LSgGqrqRi 222 (265)
||||+|+..|.+ .|++|||.+... . ..++....++..++.+... ...+.+|||||||||
T Consensus 82 ~~~iGfvFQ~~nLl~~ltv~ENv~lpl~~~~~~~~~~~~~~~~l~~~lgl~~~~~----------~~~p~eLSGGqqQRV 151 (226)
T COG1136 82 RKKIGFVFQNFNLLPDLTVLENVELPLLIAGKSAGRRKRAAEELLEVLGLEDRLL----------KKKPSELSGGQQQRV 151 (226)
T ss_pred HHhEEEECccCCCCCCCCHHHHHHhHHHHcCCChhHHHHHHHHHHHhcCChhhhc----------cCCchhcCHHHHHHH
Confidence 999999999997 599999995321 1 1233445555556654433 123469999999999
Q ss_pred HHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHH
Q psy1503 223 NLARAVYKNADIYLLDDPLSAVDMHVGKHLFEDC 256 (265)
Q Consensus 223 alARal~~~~~illLDEp~s~LD~~~~~~i~~~~ 256 (265)
||||||+.+|++++.||||.+||.++.+.|++..
T Consensus 152 AIARAL~~~P~iilADEPTgnLD~~t~~~V~~ll 185 (226)
T COG1136 152 AIARALINNPKIILADEPTGNLDSKTAKEVLELL 185 (226)
T ss_pred HHHHHHhcCCCeEEeeCccccCChHHHHHHHHHH
Confidence 9999999999999999999999999999997743
No 56
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=5e-42 Score=304.13 Aligned_cols=157 Identities=32% Similarity=0.475 Sum_probs=136.7
Q ss_pred cEEEEeEEEEeCCC--CCCcceeeceEEEcCCcEEEEEcCCCChHHHHHHHHhcCcCCCccEEEEcCe------------
Q psy1503 88 HVSLDNVTAQWSLQ--NADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSLGGT------------ 153 (265)
Q Consensus 88 ~i~~~~~~~~~~~~--~~~~~l~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g~------------ 153 (265)
+|+++++++.|... ....+|+||||+|++|++++|+|.||||||||++++.++..|++|+|.++|.
T Consensus 1 mI~l~~vsK~~~~~~~~~~~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~PtsG~v~v~G~di~~l~~~~Lr~ 80 (339)
T COG1135 1 MIELENVSKTFGQTGTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSGSVFVDGQDLTALSEAELRQ 80 (339)
T ss_pred CeEEEeeeeeeccCCCCceeeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEEcCEecccCChHHHHH
Confidence 48999999999752 1246899999999999999999999999999999999999999999999993
Q ss_pred ----EEEEecCCCCcc-ccHHHHHhcCCcc---c----HHHHHHHHHHhcchhHHhcCCCCCccccCCCCCCCCHHHHHH
Q psy1503 154 ----VSYASQEPWIFA-ATIRQNILFGLPY---L----RRRYADVIRVCALQDDFDSLPNGDFTVVGERGASLSGGQKAR 221 (265)
Q Consensus 154 ----i~~v~Q~~~l~~-~ti~eni~~~~~~---~----~~~~~~~~~~~~l~~~i~~l~~g~~t~vg~~g~~LSgGqrqR 221 (265)
||+++|++.|++ .||.+||.|.... . +.++.+.++..+|.+..+..| .+||||||||
T Consensus 81 ~R~~IGMIFQhFnLLssrTV~~NvA~PLeiag~~k~ei~~RV~elLelVgL~dk~~~yP-----------~qLSGGQKQR 149 (339)
T COG1135 81 LRQKIGMIFQHFNLLSSRTVFENVAFPLELAGVPKAEIKQRVAELLELVGLSDKADRYP-----------AQLSGGQKQR 149 (339)
T ss_pred HHhhccEEeccccccccchHHhhhhhhHhhcCCCHHHHHHHHHHHHHHcCChhhhccCc-----------hhcCcchhhH
Confidence 999999999997 6999999997532 1 344556666677766655554 6999999999
Q ss_pred HHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHH
Q psy1503 222 INLARAVYKNADIYLLDDPLSAVDMHVGKHLFED 255 (265)
Q Consensus 222 ialARal~~~~~illLDEp~s~LD~~~~~~i~~~ 255 (265)
|+|||||+.+|+|+|.|||||||||.+.+.|++-
T Consensus 150 VaIARALa~~P~iLL~DEaTSALDP~TT~sIL~L 183 (339)
T COG1135 150 VAIARALANNPKILLCDEATSALDPETTQSILEL 183 (339)
T ss_pred HHHHHHHhcCCCEEEecCccccCChHHHHHHHHH
Confidence 9999999999999999999999999999999774
No 57
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=100.00 E-value=6e-42 Score=313.08 Aligned_cols=156 Identities=29% Similarity=0.507 Sum_probs=137.8
Q ss_pred CcEEEEeEEEEeCCCCCCcceeeceEEEcCCcEEEEEcCCCChHHHHHHHHhcCcCCCccEEEEcCe-----------EE
Q psy1503 87 GHVSLDNVTAQWSLQNADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSLGGT-----------VS 155 (265)
Q Consensus 87 ~~i~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g~-----------i~ 155 (265)
..++++|++++|+ +..+++|+||+|++||+++++|||||||||||++|+|+..|++|+|.++|+ |+
T Consensus 4 ~~l~i~~v~k~yg---~~~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~p~~G~I~l~G~~i~~lpp~kR~ig 80 (352)
T COG3842 4 PALEIRNVSKSFG---DFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEILLDGEDITDVPPEKRPIG 80 (352)
T ss_pred ceEEEEeeeeecC---CeeEEecceeeecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhhcccc
Confidence 4689999999997 357999999999999999999999999999999999999999999999995 99
Q ss_pred EEecCCCCcc-ccHHHHHhcCCcc----c----HHHHHHHHHHhcchhHHhcCCCCCccccCCCCCCCCHHHHHHHHHHH
Q psy1503 156 YASQEPWIFA-ATIRQNILFGLPY----L----RRRYADVIRVCALQDDFDSLPNGDFTVVGERGASLSGGQKARINLAR 226 (265)
Q Consensus 156 ~v~Q~~~l~~-~ti~eni~~~~~~----~----~~~~~~~~~~~~l~~~i~~l~~g~~t~vg~~g~~LSgGqrqRialAR 226 (265)
+|+|+..||+ .||.|||.||... . .+++.++++..++.+.-.+.| .+|||||||||||||
T Consensus 81 ~VFQ~YALFPHltV~~NVafGLk~~~~~~~~~i~~rv~e~L~lV~L~~~~~R~p-----------~qLSGGQqQRVALAR 149 (352)
T COG3842 81 MVFQSYALFPHMTVEENVAFGLKVRKKLKKAEIKARVEEALELVGLEGFADRKP-----------HQLSGGQQQRVALAR 149 (352)
T ss_pred eeecCcccCCCCcHHHHhhhhhhhcCCCCHHHHHHHHHHHHHHcCchhhhhhCh-----------hhhChHHHHHHHHHH
Confidence 9999999996 6999999999751 1 236667777777776555444 689999999999999
Q ss_pred HHccCCCEEEEeCCCCCcCHHHHHHHHHHH
Q psy1503 227 AVYKNADIYLLDDPLSAVDMHVGKHLFEDC 256 (265)
Q Consensus 227 al~~~~~illLDEp~s~LD~~~~~~i~~~~ 256 (265)
||..+|+++|||||+|+||.+.+.++..+.
T Consensus 150 AL~~~P~vLLLDEPlSaLD~kLR~~mr~El 179 (352)
T COG3842 150 ALVPEPKVLLLDEPLSALDAKLREQMRKEL 179 (352)
T ss_pred HhhcCcchhhhcCcccchhHHHHHHHHHHH
Confidence 999999999999999999999999885543
No 58
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=100.00 E-value=5.1e-41 Score=290.79 Aligned_cols=170 Identities=30% Similarity=0.454 Sum_probs=152.1
Q ss_pred cEEEEeEEEEeCCCCCCcceeeceEEEcCCcEEEEEcCCCChHHHHHHHHhcCcCCCccEEEEcCe-------------E
Q psy1503 88 HVSLDNVTAQWSLQNADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSLGGT-------------V 154 (265)
Q Consensus 88 ~i~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g~-------------i 154 (265)
.++++|++++|+.. .+++++|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|. +
T Consensus 2 ~l~~~~l~~~~~~~-~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i 80 (221)
T cd03244 2 DIEFKNVSLRYRPN-LPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGSILIDGVDISKIGLHDLRSRI 80 (221)
T ss_pred cEEEEEEEEecCCC-CcccccceEEEECCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhHhCCHHHHhhhE
Confidence 47899999999642 246999999999999999999999999999999999999999999999872 8
Q ss_pred EEEecCCCCccccHHHHHhcCCcccHHHHHHHHHHhcchhHHhcCCCCCccccCCCCCCCCHHHHHHHHHHHHHccCCCE
Q psy1503 155 SYASQEPWIFAATIRQNILFGLPYLRRRYADVIRVCALQDDFDSLPNGDFTVVGERGASLSGGQKARINLARAVYKNADI 234 (265)
Q Consensus 155 ~~v~Q~~~l~~~ti~eni~~~~~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~vg~~g~~LSgGqrqRialARal~~~~~i 234 (265)
+|++|++.+++.|++||+.+......++..++++..++.+.+..+|.|+++..+..+.+||||||||++|||||+.+|++
T Consensus 81 ~~~~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~LS~G~~qr~~laral~~~p~l 160 (221)
T cd03244 81 SIIPQDPVLFSGTIRSNLDPFGEYSDEELWQALERVGLKEFVESLPGGLDTVVEEGGENLSVGQRQLLCLARALLRKSKI 160 (221)
T ss_pred EEECCCCccccchHHHHhCcCCCCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCcCCHHHHHHHHHHHHHhcCCCE
Confidence 99999999999999999986544445566777788889888999999999999999999999999999999999999999
Q ss_pred EEEeCCCCCcCHHHHHHHHHHHHHH
Q psy1503 235 YLLDDPLSAVDMHVGKHLFEDCISG 259 (265)
Q Consensus 235 llLDEp~s~LD~~~~~~i~~~~i~~ 259 (265)
+||||||++||+.++..+++ .+..
T Consensus 161 lllDEP~~~LD~~~~~~l~~-~l~~ 184 (221)
T cd03244 161 LVLDEATASVDPETDALIQK-TIRE 184 (221)
T ss_pred EEEeCccccCCHHHHHHHHH-HHHH
Confidence 99999999999999988755 4433
No 59
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=100.00 E-value=1.2e-41 Score=283.25 Aligned_cols=154 Identities=27% Similarity=0.496 Sum_probs=140.2
Q ss_pred cEEEEeEEEEeCCCCCCcceeeceEEEcCCcEEEEEcCCCChHHHHHHHHhcCcCCCccEEEEcCe--------------
Q psy1503 88 HVSLDNVTAQWSLQNADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSLGGT-------------- 153 (265)
Q Consensus 88 ~i~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g~-------------- 153 (265)
+|+|+||++.|+.. .++|+||||+|++||++-|+||||||||||+|+|++...|++|+|.++|.
T Consensus 1 mI~f~~V~k~Y~~g--~~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~pt~G~i~~~~~dl~~l~~~~iP~LR 78 (223)
T COG2884 1 MIRFENVSKAYPGG--REALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNGHDLSRLKGREIPFLR 78 (223)
T ss_pred CeeehhhhhhcCCC--chhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhhcCCCceEEECCeecccccccccchhh
Confidence 48999999999753 67999999999999999999999999999999999999999999999983
Q ss_pred --EEEEecCCCCcc-ccHHHHHhcCCcc-------cHHHHHHHHHHhcchhHHhcCCCCCccccCCCCCCCCHHHHHHHH
Q psy1503 154 --VSYASQEPWIFA-ATIRQNILFGLPY-------LRRRYADVIRVCALQDDFDSLPNGDFTVVGERGASLSGGQKARIN 223 (265)
Q Consensus 154 --i~~v~Q~~~l~~-~ti~eni~~~~~~-------~~~~~~~~~~~~~l~~~i~~l~~g~~t~vg~~g~~LSgGqrqRia 223 (265)
||+|+||..|.+ .|+.||+.|.... ..+++.++++.++|.+....+| .+||||||||++
T Consensus 79 R~IGvVFQD~rLL~~~tvyeNVA~pL~v~G~~~~~i~~rV~~~L~~VgL~~k~~~lP-----------~~LSGGEQQRva 147 (223)
T COG2884 79 RQIGVVFQDFRLLPDRTVYENVALPLRVIGKPPREIRRRVSEVLDLVGLKHKARALP-----------SQLSGGEQQRVA 147 (223)
T ss_pred heeeeEeeeccccccchHhhhhhhhhhccCCCHHHHHHHHHHHHHHhccchhhhcCc-----------cccCchHHHHHH
Confidence 999999999885 5999999986432 2456778889999998888888 489999999999
Q ss_pred HHHHHccCCCEEEEeCCCCCcCHHHHHHHHH
Q psy1503 224 LARAVYKNADIYLLDDPLSAVDMHVGKHLFE 254 (265)
Q Consensus 224 lARal~~~~~illLDEp~s~LD~~~~~~i~~ 254 (265)
||||++.+|+++|.||||.+||+....+|++
T Consensus 148 IARAiV~~P~vLlADEPTGNLDp~~s~~im~ 178 (223)
T COG2884 148 IARAIVNQPAVLLADEPTGNLDPDLSWEIMR 178 (223)
T ss_pred HHHHHccCCCeEeecCCCCCCChHHHHHHHH
Confidence 9999999999999999999999999999976
No 60
>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=100.00 E-value=3.1e-40 Score=296.74 Aligned_cols=192 Identities=39% Similarity=0.695 Sum_probs=161.3
Q ss_pred HHHHHHHhcCCCCCCcCCCCCCCCCCcEEEEeEEEEeCCCCCCcceeeceEEEcCCcEEEEEcCCCChHHHHHHHHhcCc
Q psy1503 62 DRVLNFLLLGEHEPRKINSVHSNGKGHVSLDNVTAQWSLQNADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNEL 141 (265)
Q Consensus 62 ~ri~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~g~~ 141 (265)
+.+.+.|..+..+.... ........|+++|+++.+ .++|+|+||+|++|++++|+||||||||||+++|+|++
T Consensus 15 ~~~~~~~~~~~~~~~~~--~~~~~~~~l~i~nls~~~-----~~vL~~vs~~i~~Ge~~~liG~NGsGKSTLl~~I~Gl~ 87 (282)
T cd03291 15 EGFGELLEKAKQENNDR--KHSSDDNNLFFSNLCLVG-----APVLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGEL 87 (282)
T ss_pred HHHHHHHhccccccccc--ccCCCCCeEEEEEEEEec-----ccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 66677776654322111 112234579999999852 35899999999999999999999999999999999999
Q ss_pred CCCccEEEEcCeEEEEecCCCCccccHHHHHhcCCcccHHHHHHHHHHhcchhHHhcCCCCCccccCCCCCCCCHHHHHH
Q psy1503 142 RISSGKVSLGGTVSYASQEPWIFAATIRQNILFGLPYLRRRYADVIRVCALQDDFDSLPNGDFTVVGERGASLSGGQKAR 221 (265)
Q Consensus 142 ~~~~G~i~~~g~i~~v~Q~~~l~~~ti~eni~~~~~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~vg~~g~~LSgGqrqR 221 (265)
+|++|+|.++|.++|++|++++++.|++||+.++......++.+.++.+++.+.+..+|.+.++.+++.+.+||||||||
T Consensus 88 ~p~~G~I~i~g~i~yv~q~~~l~~~tv~enl~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~qr 167 (282)
T cd03291 88 EPSEGKIKHSGRISFSSQFSWIMPGTIKENIIFGVSYDEYRYKSVVKACQLEEDITKFPEKDNTVLGEGGITLSGGQRAR 167 (282)
T ss_pred CCCCcEEEECCEEEEEeCcccccccCHHHHhhcccccCHHHHHHHHHHhCCHHHHHhccccccceecCCCCcCCHHHHHH
Confidence 99999999999999999999999999999999865433344556677778888888899888888999999999999999
Q ss_pred HHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHH
Q psy1503 222 INLARAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGC 260 (265)
Q Consensus 222 ialARal~~~~~illLDEp~s~LD~~~~~~i~~~~i~~~ 260 (265)
++|||||+.+|+++||||||++||+.+...+++.++..+
T Consensus 168 v~lAraL~~~p~iLiLDEPt~gLD~~~~~~l~~~ll~~~ 206 (282)
T cd03291 168 ISLARAVYKDADLYLLDSPFGYLDVFTEKEIFESCVCKL 206 (282)
T ss_pred HHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999988877665443
No 61
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=100.00 E-value=1.2e-40 Score=291.54 Aligned_cols=170 Identities=30% Similarity=0.521 Sum_probs=148.0
Q ss_pred EEEEeEEEEeCCCCCCcceeeceEEEcCCcEEEEEcCCCChHHHHHHHHhcCcCCCccEEEEcCe-------------EE
Q psy1503 89 VSLDNVTAQWSLQNADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSLGGT-------------VS 155 (265)
Q Consensus 89 i~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g~-------------i~ 155 (265)
++++|++++|+.. ..++++|+||++++|++++|+||||||||||+++|+|+++|++|+|.++|. ++
T Consensus 1 i~~~~l~~~~~~~-~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (237)
T cd03252 1 ITFEHVRFRYKPD-GPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVLVDGHDLALADPAWLRRQVG 79 (237)
T ss_pred CEEEEEEEecCCC-CccceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCeehHhcCHHHHhhcEE
Confidence 4789999999642 356899999999999999999999999999999999999999999999882 89
Q ss_pred EEecCCCCccccHHHHHhcCCc-ccHHHHHHHHHHhcchhHHhcCCCCCccccCCCCCCCCHHHHHHHHHHHHHccCCCE
Q psy1503 156 YASQEPWIFAATIRQNILFGLP-YLRRRYADVIRVCALQDDFDSLPNGDFTVVGERGASLSGGQKARINLARAVYKNADI 234 (265)
Q Consensus 156 ~v~Q~~~l~~~ti~eni~~~~~-~~~~~~~~~~~~~~l~~~i~~l~~g~~t~vg~~g~~LSgGqrqRialARal~~~~~i 234 (265)
|++|++++|+.|+.||+.++.. ....++.+.++..++.+.+..+|.++++....++.+||||||||++||||++.+|++
T Consensus 80 ~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p~l 159 (237)
T cd03252 80 VVLQENVLFNRSIRDNIALADPGMSMERVIEAAKLAGAHDFISELPEGYDTIVGEQGAGLSGGQRQRIAIARALIHNPRI 159 (237)
T ss_pred EEcCCchhccchHHHHhhccCCCCCHHHHHHHHHHcCcHHHHHhCcccccchhhcCCCcCCHHHHHHHHHHHHHhhCCCE
Confidence 9999999999999999988643 223344555666777888888998988888889999999999999999999999999
Q ss_pred EEEeCCCCCcCHHHHHHHHHHHHHHH
Q psy1503 235 YLLDDPLSAVDMHVGKHLFEDCISGC 260 (265)
Q Consensus 235 llLDEp~s~LD~~~~~~i~~~~i~~~ 260 (265)
+||||||++||+.+...+.+. +..+
T Consensus 160 lllDEP~~~LD~~~~~~l~~~-l~~~ 184 (237)
T cd03252 160 LIFDEATSALDYESEHAIMRN-MHDI 184 (237)
T ss_pred EEEeCCcccCCHHHHHHHHHH-HHHh
Confidence 999999999999999988654 4443
No 62
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=100.00 E-value=2.4e-40 Score=286.37 Aligned_cols=171 Identities=35% Similarity=0.547 Sum_probs=150.8
Q ss_pred cEEEEeEEEEeCCCCCCcceeeceEEEcCCcEEEEEcCCCChHHHHHHHHhcCcCCCccEEEEcCe-------------E
Q psy1503 88 HVSLDNVTAQWSLQNADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSLGGT-------------V 154 (265)
Q Consensus 88 ~i~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g~-------------i 154 (265)
.++++|++++|+.. ..++++|+||+|++|++++|+||||||||||+++|+|+.+|++|+|.++|. +
T Consensus 2 ~l~~~~l~~~~~~~-~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i 80 (220)
T cd03245 2 RIEFRNVSFSYPNQ-EIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVLLDGTDIRQLDPADLRRNI 80 (220)
T ss_pred eEEEEEEEEEcCCC-CcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCeEEECCEEhHHCCHHHHHhhE
Confidence 47899999999632 246899999999999999999999999999999999999999999999882 8
Q ss_pred EEEecCCCCccccHHHHHhcCCcc-cHHHHHHHHHHhcchhHHhcCCCCCccccCCCCCCCCHHHHHHHHHHHHHccCCC
Q psy1503 155 SYASQEPWIFAATIRQNILFGLPY-LRRRYADVIRVCALQDDFDSLPNGDFTVVGERGASLSGGQKARINLARAVYKNAD 233 (265)
Q Consensus 155 ~~v~Q~~~l~~~ti~eni~~~~~~-~~~~~~~~~~~~~l~~~i~~l~~g~~t~vg~~g~~LSgGqrqRialARal~~~~~ 233 (265)
+|++|++++++.|+.||+.++... ...++.+.++.+++.+.++.+|.+++|.+.....+||||||||++||||++.+|+
T Consensus 81 ~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~LSgG~~qrl~la~al~~~p~ 160 (220)
T cd03245 81 GYVPQDVTLFYGTLRDNITLGAPLADDERILRAAELAGVTDFVNKHPNGLDLQIGERGRGLSGGQRQAVALARALLNDPP 160 (220)
T ss_pred EEeCCCCccccchHHHHhhcCCCCCCHHHHHHHHHHcCcHHHHHhccccccceecCCCccCCHHHHHHHHHHHHHhcCCC
Confidence 999999999988999999876432 3445567778888888889999999999888899999999999999999999999
Q ss_pred EEEEeCCCCCcCHHHHHHHHHHHHHHH
Q psy1503 234 IYLLDDPLSAVDMHVGKHLFEDCISGC 260 (265)
Q Consensus 234 illLDEp~s~LD~~~~~~i~~~~i~~~ 260 (265)
++||||||++||+.+...+++ .+..+
T Consensus 161 llllDEPt~~LD~~~~~~l~~-~l~~~ 186 (220)
T cd03245 161 ILLLDEPTSAMDMNSEERLKE-RLRQL 186 (220)
T ss_pred EEEEeCccccCCHHHHHHHHH-HHHHh
Confidence 999999999999999988865 34433
No 63
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=100.00 E-value=6.4e-41 Score=294.62 Aligned_cols=159 Identities=26% Similarity=0.406 Sum_probs=135.4
Q ss_pred cEEEEeEEEEeCCCCCCcceeeceEEEcCCcEEEEEcCCCChHHHHHHHHhcCcCCCccEEEEcCe-------------E
Q psy1503 88 HVSLDNVTAQWSLQNADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSLGGT-------------V 154 (265)
Q Consensus 88 ~i~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g~-------------i 154 (265)
.++++|++|+|+ .+++++|+||+|++|++++|+||||||||||||+|+|+++|.+|+|.++|+ +
T Consensus 2 ~L~~~~ls~~y~---~~~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V~l~g~~i~~~~~kelAk~i 78 (258)
T COG1120 2 MLEVENLSFGYG---GKPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIASLSPKELAKKL 78 (258)
T ss_pred eeEEEEEEEEEC---CeeEEecceEEecCCcEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCCchhhcCHHHHhhhE
Confidence 578999999996 367999999999999999999999999999999999999999999999993 9
Q ss_pred EEEecCCC-CccccHHHHHhcCCcc-----------cHHHHHHHHHHhcchhHHhcCCCCCccccCCCCCCCCHHHHHHH
Q psy1503 155 SYASQEPW-IFAATIRQNILFGLPY-----------LRRRYADVIRVCALQDDFDSLPNGDFTVVGERGASLSGGQKARI 222 (265)
Q Consensus 155 ~~v~Q~~~-l~~~ti~eni~~~~~~-----------~~~~~~~~~~~~~l~~~i~~l~~g~~t~vg~~g~~LSgGqrqRi 222 (265)
||+||.+. -++.||+|-+.+|+.. |.+.+.++++.+++.+... ....+||||||||+
T Consensus 79 a~vpQ~~~~~~~~tV~d~V~~GR~p~~~~~~~~~~~D~~~v~~aL~~~~~~~la~-----------r~~~~LSGGerQrv 147 (258)
T COG1120 79 AYVPQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLEHLAD-----------RPVDELSGGERQRV 147 (258)
T ss_pred EEeccCCCCCCCcEEeehHhhcCCcccccccCCCHhHHHHHHHHHHHhCcHHHhc-----------CcccccChhHHHHH
Confidence 99999975 4567999999998521 2224556677777765443 33468999999999
Q ss_pred HHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHHh
Q psy1503 223 NLARAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGCL 261 (265)
Q Consensus 223 alARal~~~~~illLDEp~s~LD~~~~~~i~~~~i~~~l 261 (265)
.|||||+++|+|++||||||+||...+-++++.+ +.+-
T Consensus 148 ~iArALaQ~~~iLLLDEPTs~LDi~~Q~evl~ll-~~l~ 185 (258)
T COG1120 148 LIARALAQETPILLLDEPTSHLDIAHQIEVLELL-RDLN 185 (258)
T ss_pred HHHHHHhcCCCEEEeCCCccccCHHHHHHHHHHH-HHHH
Confidence 9999999999999999999999999999998743 4443
No 64
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=100.00 E-value=3.6e-40 Score=285.20 Aligned_cols=164 Identities=45% Similarity=0.802 Sum_probs=147.5
Q ss_pred EEEeEEEEeCCCCCCcceeeceEEEcCCcEEEEEcCCCChHHHHHHHHhcCcCCCccEEEEcC-----------------
Q psy1503 90 SLDNVTAQWSLQNADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSLGG----------------- 152 (265)
Q Consensus 90 ~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g----------------- 152 (265)
.+.|+.|+|+.. .++++++||+|++|++++|+||||||||||+++|+|+++|++|+|.++|
T Consensus 2 ~~~~~~~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 79 (218)
T cd03290 2 QVTNGYFSWGSG--LATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEGKVHWSNKNESEPSFEATRSRNRY 79 (218)
T ss_pred eeeeeEEecCCC--CcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCcccccccccccchhhcc
Confidence 578999999743 4699999999999999999999999999999999999999999999965
Q ss_pred eEEEEecCCCCccccHHHHHhcCCcccHHHHHHHHHHhcchhHHhcCCCCCccccCCCCCCCCHHHHHHHHHHHHHccCC
Q psy1503 153 TVSYASQEPWIFAATIRQNILFGLPYLRRRYADVIRVCALQDDFDSLPNGDFTVVGERGASLSGGQKARINLARAVYKNA 232 (265)
Q Consensus 153 ~i~~v~Q~~~l~~~ti~eni~~~~~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~vg~~g~~LSgGqrqRialARal~~~~ 232 (265)
.++|++|++.+|+.|++||+.++.....++..++++.+++.+.+..+|.++++.++....+||||||||++||||++.+|
T Consensus 80 ~i~~~~q~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p 159 (218)
T cd03290 80 SVAYAAQKPWLLNATVEENITFGSPFNKQRYKAVTDACSLQPDIDLLPFGDQTEIGERGINLSGGQRQRICVARALYQNT 159 (218)
T ss_pred eEEEEcCCCccccccHHHHHhhcCcCCHHHHHHHHHHhCcHHHHHhCcCccccCcccCCCcCCHHHHHHHHHHHHHhhCC
Confidence 28999999999988999999986544444556777888888888888999999889899999999999999999999999
Q ss_pred CEEEEeCCCCCcCHHHHHHHHHH
Q psy1503 233 DIYLLDDPLSAVDMHVGKHLFED 255 (265)
Q Consensus 233 ~illLDEp~s~LD~~~~~~i~~~ 255 (265)
+++||||||++||+.+...+++.
T Consensus 160 ~illlDEPt~~LD~~~~~~l~~~ 182 (218)
T cd03290 160 NIVFLDDPFSALDIHLSDHLMQE 182 (218)
T ss_pred CEEEEeCCccccCHHHHHHHHHH
Confidence 99999999999999999988774
No 65
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.7e-40 Score=287.76 Aligned_cols=170 Identities=27% Similarity=0.500 Sum_probs=150.4
Q ss_pred cEEEEeEEEEeCCCCCCcceeeceEEEcCCcEEEEEcCCCChHHHHHHHHhcCcCCCccEEEEcCe-------------E
Q psy1503 88 HVSLDNVTAQWSLQNADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSLGGT-------------V 154 (265)
Q Consensus 88 ~i~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g~-------------i 154 (265)
.++++|++++|+. ..++++|+||++++|++++|+||||||||||+++|+|+++|++|+|.++|. +
T Consensus 2 ~l~~~~l~~~~~~--~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i 79 (229)
T cd03254 2 EIEFENVNFSYDE--KKPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQILIDGIDIRDISRKSLRSMI 79 (229)
T ss_pred eEEEEEEEEecCC--CCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEeHHHcCHHHHhhhE
Confidence 4789999999963 235899999999999999999999999999999999999999999999872 8
Q ss_pred EEEecCCCCccccHHHHHhcCCcc-cHHHHHHHHHHhcchhHHhcCCCCCccccCCCCCCCCHHHHHHHHHHHHHccCCC
Q psy1503 155 SYASQEPWIFAATIRQNILFGLPY-LRRRYADVIRVCALQDDFDSLPNGDFTVVGERGASLSGGQKARINLARAVYKNAD 233 (265)
Q Consensus 155 ~~v~Q~~~l~~~ti~eni~~~~~~-~~~~~~~~~~~~~l~~~i~~l~~g~~t~vg~~g~~LSgGqrqRialARal~~~~~ 233 (265)
+|++|++++|+.|++||+.++... ...++.+.++.+++...++.+|.++++.++....+||||||||++|||||+.+|+
T Consensus 80 ~~~~q~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~~rv~la~al~~~p~ 159 (229)
T cd03254 80 GVVLQDTFLFSGTIMENIRLGRPNATDEEVIEAAKEAGAHDFIMKLPNGYDTVLGENGGNLSQGERQLLAIARAMLRDPK 159 (229)
T ss_pred EEecCCchhhhhHHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCcccccCHhhcCCCcCCHHHHHHHHHHHHHhcCCC
Confidence 999999999989999999986532 3345566677788888889999899998888999999999999999999999999
Q ss_pred EEEEeCCCCCcCHHHHHHHHHHHHHHH
Q psy1503 234 IYLLDDPLSAVDMHVGKHLFEDCISGC 260 (265)
Q Consensus 234 illLDEp~s~LD~~~~~~i~~~~i~~~ 260 (265)
++||||||++||+.+.+.+++ .+..+
T Consensus 160 llllDEP~~~LD~~~~~~l~~-~l~~~ 185 (229)
T cd03254 160 ILILDEATSNIDTETEKLIQE-ALEKL 185 (229)
T ss_pred EEEEeCccccCCHHHHHHHHH-HHHHh
Confidence 999999999999999988755 44444
No 66
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=100.00 E-value=6.1e-41 Score=290.11 Aligned_cols=154 Identities=28% Similarity=0.504 Sum_probs=133.6
Q ss_pred cEEEEeEEEEeCCCCCCcceeeceEEEcCCcEEEEEcCCCChHHHHHHHHhcCcCCCccEEEEcCe-------------E
Q psy1503 88 HVSLDNVTAQWSLQNADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSLGGT-------------V 154 (265)
Q Consensus 88 ~i~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g~-------------i 154 (265)
+|+++|+|+.|. ++.+++|+||+|++|++++++|||||||||+|++|.++++|++|+|+++|. |
T Consensus 1 MI~~~nvsk~y~---~~~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLiept~G~I~i~g~~i~~~d~~~LRr~I 77 (309)
T COG1125 1 MIEFENVSKRYG---NKKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEILIDGEDISDLDPVELRRKI 77 (309)
T ss_pred CceeeeeehhcC---CceeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcccCCCCceEEECCeecccCCHHHHHHhh
Confidence 479999999996 356899999999999999999999999999999999999999999999994 9
Q ss_pred EEEecCCCCcc-ccHHHHHhcCCc---cc----HHHHHHHHHHhcchh--HHhcCCCCCccccCCCCCCCCHHHHHHHHH
Q psy1503 155 SYASQEPWIFA-ATIRQNILFGLP---YL----RRRYADVIRVCALQD--DFDSLPNGDFTVVGERGASLSGGQKARINL 224 (265)
Q Consensus 155 ~~v~Q~~~l~~-~ti~eni~~~~~---~~----~~~~~~~~~~~~l~~--~i~~l~~g~~t~vg~~g~~LSgGqrqRial 224 (265)
|||-|..-||+ .||.|||.+-.. .+ +++..+.++..+|.. ...++| .+|||||+|||.+
T Consensus 78 GYviQqigLFPh~Tv~eNIa~VP~L~~w~k~~i~~r~~ELl~lvgL~p~~~~~RyP-----------~eLSGGQQQRVGv 146 (309)
T COG1125 78 GYVIQQIGLFPHLTVAENIATVPKLLGWDKERIKKRADELLDLVGLDPSEYADRYP-----------HELSGGQQQRVGV 146 (309)
T ss_pred hhhhhhcccCCCccHHHHHHhhhhhcCCCHHHHHHHHHHHHHHhCCCHHHHhhcCc-----------hhcCcchhhHHHH
Confidence 99999999996 699999986422 22 345566667777753 344555 6899999999999
Q ss_pred HHHHccCCCEEEEeCCCCCcCHHHHHHHHHH
Q psy1503 225 ARAVYKNADIYLLDDPLSAVDMHVGKHLFED 255 (265)
Q Consensus 225 ARal~~~~~illLDEp~s~LD~~~~~~i~~~ 255 (265)
||||+.+|+|+|+||||+|||+.++.++-+.
T Consensus 147 ~RALAadP~ilLMDEPFgALDpI~R~~lQ~e 177 (309)
T COG1125 147 ARALAADPPILLMDEPFGALDPITRKQLQEE 177 (309)
T ss_pred HHHHhcCCCeEeecCCccccChhhHHHHHHH
Confidence 9999999999999999999999999988443
No 67
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=100.00 E-value=6.7e-40 Score=290.69 Aligned_cols=172 Identities=27% Similarity=0.410 Sum_probs=151.7
Q ss_pred CCcEEEEeEEEEeCCCCCCcceeeceEEEcCCcEEEEEcCCCChHHHHHHHHhcCcCCCccEEEEcCe------------
Q psy1503 86 KGHVSLDNVTAQWSLQNADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSLGGT------------ 153 (265)
Q Consensus 86 ~~~i~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g~------------ 153 (265)
.+.++++|++++|+.. ...+++++||+|++|++++|+|+||||||||+++|+|+++|++|+|.++|.
T Consensus 17 ~~~i~~~~l~~~~~~~-~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~~~ 95 (257)
T cd03288 17 GGEIKIHDLCVRYENN-LKPVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIFDGKIVIDGIDISKLPLHTLRS 95 (257)
T ss_pred CceEEEEEEEEEeCCC-CCcceeEEEEEEcCCCEEEEECCCCCCHHHHHHHHHcccCCCCCeEEECCEEhhhCCHHHHhh
Confidence 4679999999999642 246899999999999999999999999999999999999999999999872
Q ss_pred -EEEEecCCCCccccHHHHHhcCCcccHHHHHHHHHHhcchhHHhcCCCCCccccCCCCCCCCHHHHHHHHHHHHHccCC
Q psy1503 154 -VSYASQEPWIFAATIRQNILFGLPYLRRRYADVIRVCALQDDFDSLPNGDFTVVGERGASLSGGQKARINLARAVYKNA 232 (265)
Q Consensus 154 -i~~v~Q~~~l~~~ti~eni~~~~~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~vg~~g~~LSgGqrqRialARal~~~~ 232 (265)
++|++|++++|+.|+++|+........+.+..+++..++.+.+..+|.++++.+++.+.+||||||||++||||++++|
T Consensus 96 ~i~~v~q~~~l~~~tv~~nl~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p 175 (257)
T cd03288 96 RLSIILQDPILFSGSIRFNLDPECKCTDDRLWEALEIAQLKNMVKSLPGGLDAVVTEGGENFSVGQRQLFCLARAFVRKS 175 (257)
T ss_pred hEEEECCCCcccccHHHHhcCcCCCCCHHHHHHHHHHhCcHHHHhhcccccCcEeccCCCcCCHHHHHHHHHHHHHhcCC
Confidence 8999999999999999998765333344556677778888889999999999999999999999999999999999999
Q ss_pred CEEEEeCCCCCcCHHHHHHHHHHHHHH
Q psy1503 233 DIYLLDDPLSAVDMHVGKHLFEDCISG 259 (265)
Q Consensus 233 ~illLDEp~s~LD~~~~~~i~~~~i~~ 259 (265)
+++||||||++||+.+...+++ .+..
T Consensus 176 ~llllDEPt~gLD~~~~~~l~~-~l~~ 201 (257)
T cd03288 176 SILIMDEATASIDMATENILQK-VVMT 201 (257)
T ss_pred CEEEEeCCccCCCHHHHHHHHH-HHHH
Confidence 9999999999999999877754 4433
No 68
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=100.00 E-value=7e-40 Score=284.75 Aligned_cols=174 Identities=32% Similarity=0.521 Sum_probs=147.4
Q ss_pred CCcEEEEeEEEEeCCCCCCcceeeceEEEcCCcEEEEEcCCCChHHHHHHHHhcCcCCCccEEEEcCe------------
Q psy1503 86 KGHVSLDNVTAQWSLQNADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSLGGT------------ 153 (265)
Q Consensus 86 ~~~i~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g~------------ 153 (265)
.+.++++|++++|+.....++++++||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.
T Consensus 9 ~~~l~~~~l~~~~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~ 88 (226)
T cd03248 9 KGIVKFQNVTFAYPTRPDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQVLLDGKPISQYEHKYLHS 88 (226)
T ss_pred CceEEEEEEEEEeCCCCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECCCchHHcCHHHHHh
Confidence 46799999999996432246899999999999999999999999999999999999999999999872
Q ss_pred -EEEEecCCCCccccHHHHHhcCCcc-cHHHHHHHHHHhcchhHHhcCCCCCccccCCCCCCCCHHHHHHHHHHHHHccC
Q psy1503 154 -VSYASQEPWIFAATIRQNILFGLPY-LRRRYADVIRVCALQDDFDSLPNGDFTVVGERGASLSGGQKARINLARAVYKN 231 (265)
Q Consensus 154 -i~~v~Q~~~l~~~ti~eni~~~~~~-~~~~~~~~~~~~~l~~~i~~l~~g~~t~vg~~g~~LSgGqrqRialARal~~~ 231 (265)
++|++|++.+|+.|++||+.++... ....+.+..+...+.+.+..++.|+.+.+..+..+||||||||++|||||+++
T Consensus 89 ~i~~~~q~~~l~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgG~~qrv~laral~~~ 168 (226)
T cd03248 89 KVSLVGQEPVLFARSLQDNIAYGLQSCSFECVKEAAQKAHAHSFISELASGYDTEVGEKGSQLSGGQKQRVAIARALIRN 168 (226)
T ss_pred hEEEEecccHHHhhhHHHHhccccCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhcC
Confidence 8999999999999999999876432 12222333344456677888887888888889999999999999999999999
Q ss_pred CCEEEEeCCCCCcCHHHHHHHHHHHHHHH
Q psy1503 232 ADIYLLDDPLSAVDMHVGKHLFEDCISGC 260 (265)
Q Consensus 232 ~~illLDEp~s~LD~~~~~~i~~~~i~~~ 260 (265)
|+++||||||++||+.+...+.+ .+..+
T Consensus 169 p~llllDEPt~~LD~~~~~~l~~-~l~~~ 196 (226)
T cd03248 169 PQVLILDEATSALDAESEQQVQQ-ALYDW 196 (226)
T ss_pred CCEEEEeCCcccCCHHHHHHHHH-HHHHH
Confidence 99999999999999999988755 44343
No 69
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=7.4e-40 Score=285.85 Aligned_cols=170 Identities=30% Similarity=0.529 Sum_probs=148.7
Q ss_pred EEEEeEEEEeCCCCCCcceeeceEEEcCCcEEEEEcCCCChHHHHHHHHhcCcCCCccEEEEcCe-------------EE
Q psy1503 89 VSLDNVTAQWSLQNADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSLGGT-------------VS 155 (265)
Q Consensus 89 i~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g~-------------i~ 155 (265)
++++|++++|+.. ..++++++||++++|++++|+||||||||||+++|+|+++|++|+|.++|. ++
T Consensus 1 i~~~~l~~~~~~~-~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (234)
T cd03251 1 VEFKNVTFRYPGD-GPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRILIDGHDVRDYTLASLRRQIG 79 (234)
T ss_pred CEEEEEEEEeCCC-CccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhccccCCCCEEEECCEEhhhCCHHHHHhhEE
Confidence 4689999999642 236899999999999999999999999999999999999999999999872 89
Q ss_pred EEecCCCCccccHHHHHhcCCc-ccHHHHHHHHHHhcchhHHhcCCCCCccccCCCCCCCCHHHHHHHHHHHHHccCCCE
Q psy1503 156 YASQEPWIFAATIRQNILFGLP-YLRRRYADVIRVCALQDDFDSLPNGDFTVVGERGASLSGGQKARINLARAVYKNADI 234 (265)
Q Consensus 156 ~v~Q~~~l~~~ti~eni~~~~~-~~~~~~~~~~~~~~l~~~i~~l~~g~~t~vg~~g~~LSgGqrqRialARal~~~~~i 234 (265)
|++|++++|+.|++||+.++.. .....+.+..+.+++.+.+..+|.++.+..+.+..+||||||||++|||||+.+|++
T Consensus 80 ~~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~l 159 (234)
T cd03251 80 LVSQDVFLFNDTVAENIAYGRPGATREEVEEAARAANAHEFIMELPEGYDTVIGERGVKLSGGQRQRIAIARALLKDPPI 159 (234)
T ss_pred EeCCCCeeccccHHHHhhccCCCCCHHHHHHHHHHcCcHHHHHhcccCcceeeccCCCcCCHHHHHHHHHHHHHhcCCCE
Confidence 9999999999999999998643 233445556667788888889988888888889999999999999999999999999
Q ss_pred EEEeCCCCCcCHHHHHHHHHHHHHHH
Q psy1503 235 YLLDDPLSAVDMHVGKHLFEDCISGC 260 (265)
Q Consensus 235 llLDEp~s~LD~~~~~~i~~~~i~~~ 260 (265)
+||||||++||+.+...+.+ .+..+
T Consensus 160 llLDEP~~~LD~~~~~~l~~-~l~~~ 184 (234)
T cd03251 160 LILDEATSALDTESERLVQA-ALERL 184 (234)
T ss_pred EEEeCccccCCHHHHHHHHH-HHHHh
Confidence 99999999999999988855 44444
No 70
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=100.00 E-value=6e-40 Score=287.27 Aligned_cols=167 Identities=34% Similarity=0.555 Sum_probs=146.7
Q ss_pred EEEEeEEEEeCCCCCCcceeeceEEEcCCcEEEEEcCCCChHHHHHHHHhcCcCCCccEEEEcC-------------eEE
Q psy1503 89 VSLDNVTAQWSLQNADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSLGG-------------TVS 155 (265)
Q Consensus 89 i~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g-------------~i~ 155 (265)
++++|+++.|+.....++++|+||++++|++++|+||||||||||+++|+|+++|++|+|.++| .++
T Consensus 1 l~i~~l~~~~~~~~~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 80 (238)
T cd03249 1 IEFKNVSFRYPSRPDVPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEILLDGVDIRDLNLRWLRSQIG 80 (238)
T ss_pred CeEEEEEEecCCCCCccceeceEEEecCCCEEEEEeCCCCCHHHHHHHHhccCCCCCCEEEECCEehhhcCHHHHHhhEE
Confidence 4689999999643234689999999999999999999999999999999999999999999988 299
Q ss_pred EEecCCCCccccHHHHHhcCCcc-cHHHHHHHHHHhcchhHHhcCCCCCccccCCCCCCCCHHHHHHHHHHHHHccCCCE
Q psy1503 156 YASQEPWIFAATIRQNILFGLPY-LRRRYADVIRVCALQDDFDSLPNGDFTVVGERGASLSGGQKARINLARAVYKNADI 234 (265)
Q Consensus 156 ~v~Q~~~l~~~ti~eni~~~~~~-~~~~~~~~~~~~~l~~~i~~l~~g~~t~vg~~g~~LSgGqrqRialARal~~~~~i 234 (265)
|++|++++++.|++||+.++... ..++....++.+++.+.+..+|.+.++.......+||||||||++|||||+.+|++
T Consensus 81 ~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~la~al~~~p~l 160 (238)
T cd03249 81 LVSQEPVLFDGTIAENIRYGKPDATDEEVEEAAKKANIHDFIMSLPDGYDTLVGERGSQLSGGQKQRIAIARALLRNPKI 160 (238)
T ss_pred EECCchhhhhhhHHHHhhccCCCCCHHHHHHHHHHcChHHHHHhhccccceeeccCCccCCHHHHHHHHHHHHHhcCCCE
Confidence 99999999989999999986432 23344555666778888888998888888888999999999999999999999999
Q ss_pred EEEeCCCCCcCHHHHHHHHHH
Q psy1503 235 YLLDDPLSAVDMHVGKHLFED 255 (265)
Q Consensus 235 llLDEp~s~LD~~~~~~i~~~ 255 (265)
+||||||++||+.+.+.+++.
T Consensus 161 lllDEP~~gLD~~~~~~l~~~ 181 (238)
T cd03249 161 LLLDEATSALDAESEKLVQEA 181 (238)
T ss_pred EEEeCccccCCHHHHHHHHHH
Confidence 999999999999999887653
No 71
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=8.2e-40 Score=285.91 Aligned_cols=165 Identities=32% Similarity=0.559 Sum_probs=146.9
Q ss_pred EEEEeEEEEeCCCCCCcceeeceEEEcCCcEEEEEcCCCChHHHHHHHHhcCcCCCccEEEEcCe-------------EE
Q psy1503 89 VSLDNVTAQWSLQNADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSLGGT-------------VS 155 (265)
Q Consensus 89 i~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g~-------------i~ 155 (265)
++++|++++|+. ...+++|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|. ++
T Consensus 1 l~~~~l~~~~~~--~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~v~~~g~~~~~~~~~~~~~~i~ 78 (236)
T cd03253 1 IEFENVTFAYDP--GRPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSILIDGQDIREVTLDSLRRAIG 78 (236)
T ss_pred CEEEEEEEEeCC--CCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEhhhCCHHHHHhhEE
Confidence 468999999953 245899999999999999999999999999999999999999999999882 89
Q ss_pred EEecCCCCccccHHHHHhcCCcc-cHHHHHHHHHHhcchhHHhcCCCCCccccCCCCCCCCHHHHHHHHHHHHHccCCCE
Q psy1503 156 YASQEPWIFAATIRQNILFGLPY-LRRRYADVIRVCALQDDFDSLPNGDFTVVGERGASLSGGQKARINLARAVYKNADI 234 (265)
Q Consensus 156 ~v~Q~~~l~~~ti~eni~~~~~~-~~~~~~~~~~~~~l~~~i~~l~~g~~t~vg~~g~~LSgGqrqRialARal~~~~~i 234 (265)
|++|++++|+.|++||+.++... ........++.+++.+.+..+|.++++.+..+..+||||||||++|||||+++|++
T Consensus 79 ~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~LS~G~~~rl~la~aL~~~p~l 158 (236)
T cd03253 79 VVPQDTVLFNDTIGYNIRYGRPDATDEEVIEAAKAAQIHDKIMRFPDGYDTIVGERGLKLSGGEKQRVAIARAILKNPPI 158 (236)
T ss_pred EECCCChhhcchHHHHHhhcCCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhcCCCE
Confidence 99999999999999999886432 23344556677788888899999999999999999999999999999999999999
Q ss_pred EEEeCCCCCcCHHHHHHHHHH
Q psy1503 235 YLLDDPLSAVDMHVGKHLFED 255 (265)
Q Consensus 235 llLDEp~s~LD~~~~~~i~~~ 255 (265)
+||||||++||+.+...+.+.
T Consensus 159 lllDEP~~~LD~~~~~~l~~~ 179 (236)
T cd03253 159 LLLDEATSALDTHTEREIQAA 179 (236)
T ss_pred EEEeCCcccCCHHHHHHHHHH
Confidence 999999999999999888653
No 72
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.3e-40 Score=283.92 Aligned_cols=156 Identities=24% Similarity=0.424 Sum_probs=131.9
Q ss_pred cEEEEeEEEEeCCCCCCcceeeceEEEcCCcEEEEEcCCCChHHHHHHHHhcCcCCCccEEEEcCe--------------
Q psy1503 88 HVSLDNVTAQWSLQNADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSLGGT-------------- 153 (265)
Q Consensus 88 ~i~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g~-------------- 153 (265)
.|+++|+++.|++ +..+|+||||+|++||+++|+||||||||||+++|.|+.+|++|+|.++|.
T Consensus 3 ~i~~~nl~k~yp~--~~~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d~t~G~i~~~g~~i~~~~~k~lr~~r 80 (258)
T COG3638 3 MIEVKNLSKTYPG--GHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEILFNGVQITKLKGKELRKLR 80 (258)
T ss_pred eEEEeeeeeecCC--CceeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcccCCCcceEEecccchhccchHHHHHHH
Confidence 6899999999974 467999999999999999999999999999999999999999999999982
Q ss_pred --EEEEecCCCCcc-ccHHHHHhcCCcc------------cHHHH---HHHHHHhcchhHHhcCCCCCccccCCCCCCCC
Q psy1503 154 --VSYASQEPWIFA-ATIRQNILFGLPY------------LRRRY---ADVIRVCALQDDFDSLPNGDFTVVGERGASLS 215 (265)
Q Consensus 154 --i~~v~Q~~~l~~-~ti~eni~~~~~~------------~~~~~---~~~~~~~~l~~~i~~l~~g~~t~vg~~g~~LS 215 (265)
+||++|.+.|.+ .|+.+|++.|.-. .++.. -++++..++.+. .-.+..+||
T Consensus 81 ~~iGmIfQ~~nLv~r~sv~~NVl~grl~~~s~~~slfglfsk~dk~~Al~aLervgi~~~-----------A~qra~~LS 149 (258)
T COG3638 81 RDIGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERVGILDK-----------AYQRASTLS 149 (258)
T ss_pred HhceeEeccCCcccccHHHHHHHhhhcccchHHHHHhCCCCHHHHHHHHHHHHHcCcHHH-----------HHHHhccCC
Confidence 999999999997 5999999987521 12221 223333333322 235678999
Q ss_pred HHHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHH
Q psy1503 216 GGQKARINLARAVYKNADIYLLDDPLSAVDMHVGKHLFEDC 256 (265)
Q Consensus 216 gGqrqRialARal~~~~~illLDEp~s~LD~~~~~~i~~~~ 256 (265)
|||+|||+|||||+++|+|+|.|||+|+||+.+.++|++..
T Consensus 150 GGQQQRVaIARaL~Q~pkiILADEPvasLDp~~a~~Vm~~l 190 (258)
T COG3638 150 GGQQQRVAIARALVQQPKIILADEPVASLDPESAKKVMDIL 190 (258)
T ss_pred cchhHHHHHHHHHhcCCCEEecCCcccccChhhHHHHHHHH
Confidence 99999999999999999999999999999999999998744
No 73
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=100.00 E-value=7.4e-40 Score=282.76 Aligned_cols=160 Identities=20% Similarity=0.414 Sum_probs=132.2
Q ss_pred cEEEEeEEEEeCCCCCCcceeeceEEEcCCcEEEEEcCCCChHHHHHHHHhcCcCCCccEEEEcCe--------------
Q psy1503 88 HVSLDNVTAQWSLQNADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSLGGT-------------- 153 (265)
Q Consensus 88 ~i~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g~-------------- 153 (265)
+++++|++++|+.. .+++|+++||++++|++++|+||||||||||+++|+|+++|++|+|.++|.
T Consensus 1 ~l~~~~l~~~~~~~-~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~ 79 (216)
T TIGR00960 1 MIRFEQVSKAYPGG-HQPALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEKPTRGKIRFNGQDLTRLRGREIPFLR 79 (216)
T ss_pred CeEEEEEEEEecCC-CeeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEehhhcChhHHHHHH
Confidence 37899999999632 246999999999999999999999999999999999999999999999872
Q ss_pred --EEEEecCCCCcc-ccHHHHHhcCCc---c----cHHHHHHHHHHhcchhHHhcCCCCCccccCCCCCCCCHHHHHHHH
Q psy1503 154 --VSYASQEPWIFA-ATIRQNILFGLP---Y----LRRRYADVIRVCALQDDFDSLPNGDFTVVGERGASLSGGQKARIN 223 (265)
Q Consensus 154 --i~~v~Q~~~l~~-~ti~eni~~~~~---~----~~~~~~~~~~~~~l~~~i~~l~~g~~t~vg~~g~~LSgGqrqRia 223 (265)
++|++|++.+|+ .|+.||+.++.. . ..+++.++++.+++.+... ....+||||||||++
T Consensus 80 ~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LSgG~~qrv~ 148 (216)
T TIGR00960 80 RHIGMVFQDHRLLSDRTVYDNVAFPLRIIGVPPRDANERVSAALEKVGLEGKAH-----------ALPMQLSGGEQQRVA 148 (216)
T ss_pred HhceEEecCccccccccHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhh-----------CChhhCCHHHHHHHH
Confidence 799999999886 599999987521 1 1234455566665544333 334689999999999
Q ss_pred HHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHH
Q psy1503 224 LARAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGC 260 (265)
Q Consensus 224 lARal~~~~~illLDEp~s~LD~~~~~~i~~~~i~~~ 260 (265)
|||||+.+|+++||||||++||+.+.+.+.+ .+..+
T Consensus 149 laral~~~p~llllDEPt~~LD~~~~~~l~~-~l~~~ 184 (216)
T TIGR00960 149 IARAIVHKPPLLLADEPTGNLDPELSRDIMR-LFEEF 184 (216)
T ss_pred HHHHHhcCCCEEEEeCCCCcCCHHHHHHHHH-HHHHH
Confidence 9999999999999999999999999998865 44444
No 74
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=100.00 E-value=3.1e-40 Score=273.22 Aligned_cols=157 Identities=32% Similarity=0.474 Sum_probs=138.0
Q ss_pred EEEEeEEEEeCCCCCCcceeeceEEEcCCcEEEEEcCCCChHHHHHHHHhcCcCCCccEEEEcCe-----------EEEE
Q psy1503 89 VSLDNVTAQWSLQNADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSLGGT-----------VSYA 157 (265)
Q Consensus 89 i~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g~-----------i~~v 157 (265)
+.+++|.|+|+.. --..+++|++||++||+||||||||||+++|+|+..|.+|+|+++|. ++++
T Consensus 2 l~L~~V~~~y~~~-----~~~fdl~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~P~~G~i~i~g~d~t~~~P~~RPVSml 76 (231)
T COG3840 2 LALDDVRFSYGHL-----PMRFDLTVPAGEIVAILGPSGAGKSTLLNLIAGFETPASGEILINGVDHTASPPAERPVSML 76 (231)
T ss_pred ccccceEEeeCcc-----eEEEEEeecCCcEEEEECCCCccHHHHHHHHHhccCCCCceEEEcCeecCcCCcccCChhhh
Confidence 5688999999642 23578999999999999999999999999999999999999999995 9999
Q ss_pred ecCCCCcc-ccHHHHHhcCCcc-------cHHHHHHHHHHhcchhHHhcCCCCCccccCCCCCCCCHHHHHHHHHHHHHc
Q psy1503 158 SQEPWIFA-ATIRQNILFGLPY-------LRRRYADVIRVCALQDDFDSLPNGDFTVVGERGASLSGGQKARINLARAVY 229 (265)
Q Consensus 158 ~Q~~~l~~-~ti~eni~~~~~~-------~~~~~~~~~~~~~l~~~i~~l~~g~~t~vg~~g~~LSgGqrqRialARal~ 229 (265)
+|+..||. .||.+||.+|... +.++++.++...++....+++|. +||||||||+||||+|+
T Consensus 77 FQEnNLFaHLtV~qNigLGl~P~LkL~a~~r~~v~~aa~~vGl~~~~~RLP~-----------~LSGGqRQRvALARclv 145 (231)
T COG3840 77 FQENNLFAHLTVAQNIGLGLSPGLKLNAEQREKVEAAAAQVGLAGFLKRLPG-----------ELSGGQRQRVALARCLV 145 (231)
T ss_pred hhccccchhhhhhhhhcccCCcccccCHHHHHHHHHHHHHhChhhHhhhCcc-----------ccCchHHHHHHHHHHHh
Confidence 99999996 6999999998632 35677888889999999999984 89999999999999999
Q ss_pred cCCCEEEEeCCCCCcCHHHHHHHHHHHHHHHhh
Q psy1503 230 KNADIYLLDDPLSAVDMHVGKHLFEDCISGCLT 262 (265)
Q Consensus 230 ~~~~illLDEp~s~LD~~~~~~i~~~~i~~~l~ 262 (265)
++.+|++||||||+||+.-+.++.. .+..+..
T Consensus 146 R~~PilLLDEPFsALdP~LR~eMl~-Lv~~l~~ 177 (231)
T COG3840 146 REQPILLLDEPFSALDPALRAEMLA-LVSQLCD 177 (231)
T ss_pred ccCCeEEecCchhhcCHHHHHHHHH-HHHHHHH
Confidence 9999999999999999999998865 3344443
No 75
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.6e-40 Score=292.77 Aligned_cols=154 Identities=34% Similarity=0.568 Sum_probs=135.4
Q ss_pred cEEEEeEEEEeCCCCCCcceeeceEEEcCCcEEEEEcCCCChHHHHHHHHhcCcCCCccEEEEcCe--------------
Q psy1503 88 HVSLDNVTAQWSLQNADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSLGGT-------------- 153 (265)
Q Consensus 88 ~i~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g~-------------- 153 (265)
+|.++++++.|+. ..+++||+++|+.||.+|+.|||||||||||++|+|+..|++|.|.++|+
T Consensus 2 ~i~i~~~~~~~~~---~~a~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~p~~G~I~~~~~~l~D~~~~~~~~R~ 78 (345)
T COG1118 2 SIRINNVKKRFGA---FGALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRIRLNGRVLFDVSNLAVRDRK 78 (345)
T ss_pred ceeehhhhhhccc---ccccccceeeecCCcEEEEECCCCCcHHHHHHHHhCcCCCCCceEEECCEeccchhccchhhcc
Confidence 5788999999964 46899999999999999999999999999999999999999999999984
Q ss_pred EEEEecCCCCcc-ccHHHHHhcCCcc---------cHHHHHHHHHHhcchhHHhcCCCCCccccCCCCCCCCHHHHHHHH
Q psy1503 154 VSYASQEPWIFA-ATIRQNILFGLPY---------LRRRYADVIRVCALQDDFDSLPNGDFTVVGERGASLSGGQKARIN 223 (265)
Q Consensus 154 i~~v~Q~~~l~~-~ti~eni~~~~~~---------~~~~~~~~~~~~~l~~~i~~l~~g~~t~vg~~g~~LSgGqrqRia 223 (265)
||||+|+.-||+ .||.+||.||.+. .+.+..+.++.|.|...-+..| .+||||||||||
T Consensus 79 VGfvFQ~YALF~HmtVa~NIAFGl~~~~~~p~~~~~r~rv~elL~lvqL~~la~ryP-----------~QLSGGQrQRVA 147 (345)
T COG1118 79 VGFVFQHYALFPHMTVADNIAFGLKVRKERPSEAEIRARVEELLRLVQLEGLADRYP-----------AQLSGGQRQRVA 147 (345)
T ss_pred eeEEEechhhcccchHHhhhhhcccccccCCChhhHHHHHHHHHHHhcccchhhcCc-----------hhcChHHHHHHH
Confidence 999999999995 7999999999732 2345666777787766555555 589999999999
Q ss_pred HHHHHccCCCEEEEeCCCCCcCHHHHHHHHHH
Q psy1503 224 LARAVYKNADIYLLDDPLSAVDMHVGKHLFED 255 (265)
Q Consensus 224 lARal~~~~~illLDEp~s~LD~~~~~~i~~~ 255 (265)
|||||+.+|++||||||+++||++.++.+-..
T Consensus 148 LARALA~eP~vLLLDEPf~ALDa~vr~~lr~w 179 (345)
T COG1118 148 LARALAVEPKVLLLDEPFGALDAKVRKELRRW 179 (345)
T ss_pred HHHHhhcCCCeEeecCCchhhhHHHHHHHHHH
Confidence 99999999999999999999999999887443
No 76
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.5e-39 Score=301.06 Aligned_cols=161 Identities=24% Similarity=0.484 Sum_probs=136.0
Q ss_pred cEEEEeEEEEeCCCCCCcceeeceEEEcCCcEEEEEcCCCChHHHHHHHHhcCcCCCccEEEEcCe-----------EEE
Q psy1503 88 HVSLDNVTAQWSLQNADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSLGGT-----------VSY 156 (265)
Q Consensus 88 ~i~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g~-----------i~~ 156 (265)
.++++|++++|+. ...+|+|+||+|++|++++|+||||||||||+++|+|+.+|++|+|.++|. |+|
T Consensus 3 ~l~i~~l~~~~~~--~~~~l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~ 80 (356)
T PRK11650 3 GLKLQAVRKSYDG--KTQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERITSGEIWIGGRVVNELEPADRDIAM 80 (356)
T ss_pred EEEEEeEEEEeCC--CCEEEeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEE
Confidence 4899999999942 246899999999999999999999999999999999999999999999983 999
Q ss_pred EecCCCCcc-ccHHHHHhcCCcc---c----HHHHHHHHHHhcchhHHhcCCCCCccccCCCCCCCCHHHHHHHHHHHHH
Q psy1503 157 ASQEPWIFA-ATIRQNILFGLPY---L----RRRYADVIRVCALQDDFDSLPNGDFTVVGERGASLSGGQKARINLARAV 228 (265)
Q Consensus 157 v~Q~~~l~~-~ti~eni~~~~~~---~----~~~~~~~~~~~~l~~~i~~l~~g~~t~vg~~g~~LSgGqrqRialARal 228 (265)
|+|++.+|+ .|++|||.|+... . .++..++++.+++.+..++. ..+|||||||||+|||||
T Consensus 81 v~Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~-----------~~~LSgGq~QRvalARAL 149 (356)
T PRK11650 81 VFQNYALYPHMSVRENMAYGLKIRGMPKAEIEERVAEAARILELEPLLDRK-----------PRELSGGQRQRVAMGRAI 149 (356)
T ss_pred EeCCccccCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhHhhCC-----------hhhCCHHHHHHHHHHHHH
Confidence 999999996 6999999987431 1 23445566666666554444 468999999999999999
Q ss_pred ccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHHhh
Q psy1503 229 YKNADIYLLDDPLSAVDMHVGKHLFEDCISGCLT 262 (265)
Q Consensus 229 ~~~~~illLDEp~s~LD~~~~~~i~~~~i~~~l~ 262 (265)
+.+|+++|||||||+||+.++..+.+. +..+.+
T Consensus 150 ~~~P~llLLDEP~s~LD~~~r~~l~~~-l~~l~~ 182 (356)
T PRK11650 150 VREPAVFLFDEPLSNLDAKLRVQMRLE-IQRLHR 182 (356)
T ss_pred hcCCCEEEEeCCcccCCHHHHHHHHHH-HHHHHH
Confidence 999999999999999999999988664 444433
No 77
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=100.00 E-value=2.2e-39 Score=298.32 Aligned_cols=161 Identities=29% Similarity=0.411 Sum_probs=133.3
Q ss_pred cEEEEeEEEEeCCCC-CCcceeeceEEEcCCcEEEEEcCCCChHHHHHHHHhcCcCCCccEEEEcCe-------------
Q psy1503 88 HVSLDNVTAQWSLQN-ADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSLGGT------------- 153 (265)
Q Consensus 88 ~i~~~~~~~~~~~~~-~~~~l~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g~------------- 153 (265)
+|+++|++++|+... ..++|+|+||+|++|++++|+||||||||||+++|.|+++|++|+|.++|.
T Consensus 1 mI~~~~lsk~y~~~~~~~~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~p~~G~I~i~G~~i~~~~~~~l~~~ 80 (343)
T TIGR02314 1 MIKLSNITKVFHQGTKTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGSVIVDGQDLTTLSNSELTKA 80 (343)
T ss_pred CEEEEEEEEEECCCCcceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHHH
Confidence 478999999996321 246999999999999999999999999999999999999999999999873
Q ss_pred ---EEEEecCCCCcc-ccHHHHHhcCCc---cc----HHHHHHHHHHhcchhHHhcCCCCCccccCCCCCCCCHHHHHHH
Q psy1503 154 ---VSYASQEPWIFA-ATIRQNILFGLP---YL----RRRYADVIRVCALQDDFDSLPNGDFTVVGERGASLSGGQKARI 222 (265)
Q Consensus 154 ---i~~v~Q~~~l~~-~ti~eni~~~~~---~~----~~~~~~~~~~~~l~~~i~~l~~g~~t~vg~~g~~LSgGqrqRi 222 (265)
|+|++|++.+|+ .|++||+.++.. .. .++..++++..++.+..+ ..+.+|||||||||
T Consensus 81 r~~Ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~v~e~l~~vgL~~~~~-----------~~~~~LSgGqkQRV 149 (343)
T TIGR02314 81 RRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEIKRKVTELLALVGLGDKHD-----------SYPSNLSGGQKQRV 149 (343)
T ss_pred hcCEEEEECCccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhh-----------CChhhCCHHHHHHH
Confidence 899999999996 699999987532 11 123344555555544333 34578999999999
Q ss_pred HHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHH
Q psy1503 223 NLARAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGC 260 (265)
Q Consensus 223 alARal~~~~~illLDEp~s~LD~~~~~~i~~~~i~~~ 260 (265)
+|||||+.+|+++|||||||+||+.+...+++ .+..+
T Consensus 150 ~IARAL~~~P~iLLlDEPts~LD~~t~~~i~~-lL~~l 186 (343)
T TIGR02314 150 AIARALASNPKVLLCDEATSALDPATTQSILE-LLKEI 186 (343)
T ss_pred HHHHHHHhCCCEEEEeCCcccCCHHHHHHHHH-HHHHH
Confidence 99999999999999999999999999998865 44443
No 78
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.4e-39 Score=298.10 Aligned_cols=161 Identities=24% Similarity=0.449 Sum_probs=135.3
Q ss_pred CcEEEEeEEEEeCCCCCCcceeeceEEEcCCcEEEEEcCCCChHHHHHHHHhcCcCCCccEEEEcCe-----------EE
Q psy1503 87 GHVSLDNVTAQWSLQNADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSLGGT-----------VS 155 (265)
Q Consensus 87 ~~i~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g~-----------i~ 155 (265)
..|+++|++++|+. ..+|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|. ++
T Consensus 5 ~~l~~~~l~~~~~~---~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~~r~ig 81 (351)
T PRK11432 5 NFVVLKNITKRFGS---NTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDGEDVTHRSIQQRDIC 81 (351)
T ss_pred cEEEEEeEEEEECC---eEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEE
Confidence 37999999999963 45899999999999999999999999999999999999999999999983 89
Q ss_pred EEecCCCCcc-ccHHHHHhcCCcc---c----HHHHHHHHHHhcchhHHhcCCCCCccccCCCCCCCCHHHHHHHHHHHH
Q psy1503 156 YASQEPWIFA-ATIRQNILFGLPY---L----RRRYADVIRVCALQDDFDSLPNGDFTVVGERGASLSGGQKARINLARA 227 (265)
Q Consensus 156 ~v~Q~~~l~~-~ti~eni~~~~~~---~----~~~~~~~~~~~~l~~~i~~l~~g~~t~vg~~g~~LSgGqrqRialARa 227 (265)
||+|++.+|+ .|+.|||.|+... . .++..++++..++....+ ....+|||||||||+||||
T Consensus 82 ~vfQ~~~lfp~~tv~eNi~~~l~~~~~~~~~~~~~v~~~l~~~gl~~~~~-----------r~~~~LSgGq~QRVaLARa 150 (351)
T PRK11432 82 MVFQSYALFPHMSLGENVGYGLKMLGVPKEERKQRVKEALELVDLAGFED-----------RYVDQISGGQQQRVALARA 150 (351)
T ss_pred EEeCCcccCCCCCHHHHHHHHHhHcCCCHHHHHHHHHHHHHHcCCchhhc-----------CChhhCCHHHHHHHHHHHH
Confidence 9999999996 5999999987431 1 233445555555544333 3456899999999999999
Q ss_pred HccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHHhh
Q psy1503 228 VYKNADIYLLDDPLSAVDMHVGKHLFEDCISGCLT 262 (265)
Q Consensus 228 l~~~~~illLDEp~s~LD~~~~~~i~~~~i~~~l~ 262 (265)
|+.+|+++|||||||+||+.++..+.+ .+..+.+
T Consensus 151 L~~~P~lLLLDEP~s~LD~~~r~~l~~-~l~~l~~ 184 (351)
T PRK11432 151 LILKPKVLLFDEPLSNLDANLRRSMRE-KIRELQQ 184 (351)
T ss_pred HHcCCCEEEEcCCcccCCHHHHHHHHH-HHHHHHH
Confidence 999999999999999999999999855 4455544
No 79
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=100.00 E-value=2.8e-39 Score=279.30 Aligned_cols=162 Identities=27% Similarity=0.435 Sum_probs=130.8
Q ss_pred EEEEeEEEEeCCCC-CCcceeeceEEEcCCcEEEEEcCCCChHHHHHHHHhcCcCCCccEEEEcC---------------
Q psy1503 89 VSLDNVTAQWSLQN-ADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSLGG--------------- 152 (265)
Q Consensus 89 i~~~~~~~~~~~~~-~~~~l~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g--------------- 152 (265)
++++|++++|+... ..++++++||++++|++++|+||||||||||+++|+|+++|++|+|.++|
T Consensus 1 l~~~~l~~~~~~~~~~~~il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~ 80 (218)
T cd03255 1 IELKNLSKTYGGGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDGTDISKLSEKELAAFR 80 (218)
T ss_pred CeEeeeEEEecCCCcceeEEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcCCCceeEEECCEehhhcchhHHHHHH
Confidence 46899999996321 14699999999999999999999999999999999999999999999876
Q ss_pred --eEEEEecCCCCccc-cHHHHHhcCCcc---c----HHHHHHHHHHhcchhHHhcCCCCCccccCCCCCCCCHHHHHHH
Q psy1503 153 --TVSYASQEPWIFAA-TIRQNILFGLPY---L----RRRYADVIRVCALQDDFDSLPNGDFTVVGERGASLSGGQKARI 222 (265)
Q Consensus 153 --~i~~v~Q~~~l~~~-ti~eni~~~~~~---~----~~~~~~~~~~~~l~~~i~~l~~g~~t~vg~~g~~LSgGqrqRi 222 (265)
.++|++|++.+|+. |++||+.++... . .+++.++++..++.+. ......+||||||||+
T Consensus 81 ~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LS~G~~qrv 149 (218)
T cd03255 81 RRHIGFVFQSFNLLPDLTALENVELPLLLAGVPKKERRERAEELLERVGLGDR-----------LNHYPSELSGGQQQRV 149 (218)
T ss_pred hhcEEEEeeccccCCCCcHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchh-----------hhcChhhcCHHHHHHH
Confidence 28999999999875 999999875321 1 1233344444444332 3345578999999999
Q ss_pred HHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHHhh
Q psy1503 223 NLARAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGCLT 262 (265)
Q Consensus 223 alARal~~~~~illLDEp~s~LD~~~~~~i~~~~i~~~l~ 262 (265)
+|||||+.+|+++||||||++||+.+...+.+ .+..+.+
T Consensus 150 ~la~al~~~p~lllLDEP~~~LD~~~~~~l~~-~l~~~~~ 188 (218)
T cd03255 150 AIARALANDPKIILADEPTGNLDSETGKEVME-LLRELNK 188 (218)
T ss_pred HHHHHHccCCCEEEEcCCcccCCHHHHHHHHH-HHHHHHH
Confidence 99999999999999999999999999988755 4555443
No 80
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.7e-39 Score=278.73 Aligned_cols=157 Identities=31% Similarity=0.520 Sum_probs=129.6
Q ss_pred EEEEeEEEEeCCCCCCcceeeceEEEcCCcEEEEEcCCCChHHHHHHHHhcCcCCCccEEEEcCe-----------EEEE
Q psy1503 89 VSLDNVTAQWSLQNADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSLGGT-----------VSYA 157 (265)
Q Consensus 89 i~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g~-----------i~~v 157 (265)
++++|++++|++ +++++|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|. ++|+
T Consensus 1 l~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~i~~v 77 (213)
T cd03259 1 LELKGLSKTYGS---VRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRDVTGVPPERRNIGMV 77 (213)
T ss_pred CeeeeeEEEeCC---eeeecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcCcCchhhccEEEE
Confidence 468999999963 46899999999999999999999999999999999999999999999872 8999
Q ss_pred ecCCCCcc-ccHHHHHhcCCcc---c----HHHHHHHHHHhcchhHHhcCCCCCccccCCCCCCCCHHHHHHHHHHHHHc
Q psy1503 158 SQEPWIFA-ATIRQNILFGLPY---L----RRRYADVIRVCALQDDFDSLPNGDFTVVGERGASLSGGQKARINLARAVY 229 (265)
Q Consensus 158 ~Q~~~l~~-~ti~eni~~~~~~---~----~~~~~~~~~~~~l~~~i~~l~~g~~t~vg~~g~~LSgGqrqRialARal~ 229 (265)
+|++.+++ .|++||+.++... . .+++.++++.+++.+.+ .....+||||||||++|||||+
T Consensus 78 ~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LSgG~~qrl~la~al~ 146 (213)
T cd03259 78 FQDYALFPHLTVAENIAFGLKLRGVPKAEIRARVRELLELVGLEGLL-----------NRYPHELSGGQQQRVALARALA 146 (213)
T ss_pred cCchhhccCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCChhhh-----------hcChhhCCHHHHHHHHHHHHHh
Confidence 99998886 6999999875321 1 12334445555554333 3345689999999999999999
Q ss_pred cCCCEEEEeCCCCCcCHHHHHHHHHHHHHHH
Q psy1503 230 KNADIYLLDDPLSAVDMHVGKHLFEDCISGC 260 (265)
Q Consensus 230 ~~~~illLDEp~s~LD~~~~~~i~~~~i~~~ 260 (265)
.+|+++||||||++||+.+...+++ .+..+
T Consensus 147 ~~p~~lllDEPt~~LD~~~~~~l~~-~l~~~ 176 (213)
T cd03259 147 REPSLLLLDEPLSALDAKLREELRE-ELKEL 176 (213)
T ss_pred cCCCEEEEcCCcccCCHHHHHHHHH-HHHHH
Confidence 9999999999999999999988865 44444
No 81
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=100.00 E-value=2.2e-39 Score=278.51 Aligned_cols=160 Identities=26% Similarity=0.446 Sum_probs=136.9
Q ss_pred CCcEEEEeEEEEeCCCCCCcceeeceEEEcCCcEEEEEcCCCChHHHHHHHHhcCcCCCccEEEEcCe------------
Q psy1503 86 KGHVSLDNVTAQWSLQNADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSLGGT------------ 153 (265)
Q Consensus 86 ~~~i~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g~------------ 153 (265)
...|++++++++|+ ++.+++|+||+|++||+++|+||||||||||+++|.|+++|++|+|+++|.
T Consensus 6 ~~~I~vr~v~~~fG---~~~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~P~~GeI~i~G~~i~~ls~~~~~~ 82 (263)
T COG1127 6 EPLIEVRGVTKSFG---DRVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEILIDGEDIPQLSEEELYE 82 (263)
T ss_pred cceEEEeeeeeecC---CEEEecCceeeecCCcEEEEECCCCcCHHHHHHHHhccCCCCCCeEEEcCcchhccCHHHHHH
Confidence 34799999999996 467999999999999999999999999999999999999999999999983
Q ss_pred ----EEEEecCCCCcc-ccHHHHHhcCCc----ccHHHHH----HHHHHhcchhH-HhcCCCCCccccCCCCCCCCHHHH
Q psy1503 154 ----VSYASQEPWIFA-ATIRQNILFGLP----YLRRRYA----DVIRVCALQDD-FDSLPNGDFTVVGERGASLSGGQK 219 (265)
Q Consensus 154 ----i~~v~Q~~~l~~-~ti~eni~~~~~----~~~~~~~----~~~~~~~l~~~-i~~l~~g~~t~vg~~g~~LSgGqr 219 (265)
+|+++|...||+ .||.||+.|... ..++.++ .-++.++|... .+.+| .+||||++
T Consensus 83 ir~r~GvlFQ~gALFssltV~eNVafplre~~~lp~~~i~~lv~~KL~~VGL~~~~~~~~P-----------sELSGGM~ 151 (263)
T COG1127 83 IRKRMGVLFQQGALFSSLTVFENVAFPLREHTKLPESLIRELVLMKLELVGLRGAAADLYP-----------SELSGGMR 151 (263)
T ss_pred HHhheeEEeeccccccccchhHhhheehHhhccCCHHHHHHHHHHHHHhcCCChhhhhhCc-----------hhhcchHH
Confidence 999999999996 599999998642 2233332 23566777766 55666 58999999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHH
Q psy1503 220 ARINLARAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGC 260 (265)
Q Consensus 220 qRialARal~~~~~illLDEp~s~LD~~~~~~i~~~~i~~~ 260 (265)
+|+|||||++.||+|+++||||||||+.+...+ ++.|..+
T Consensus 152 KRvaLARAialdPell~~DEPtsGLDPI~a~~~-~~LI~~L 191 (263)
T COG1127 152 KRVALARAIALDPELLFLDEPTSGLDPISAGVI-DELIREL 191 (263)
T ss_pred HHHHHHHHHhcCCCEEEecCCCCCCCcchHHHH-HHHHHHH
Confidence 999999999999999999999999999997665 6677544
No 82
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=100.00 E-value=3.5e-39 Score=276.55 Aligned_cols=156 Identities=27% Similarity=0.443 Sum_probs=130.2
Q ss_pred EEeEEEEeCCCCCCcceeeceEEEcCCcEEEEEcCCCChHHHHHHHHhcCcCCCccEEEEcC----------eEEEEecC
Q psy1503 91 LDNVTAQWSLQNADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSLGG----------TVSYASQE 160 (265)
Q Consensus 91 ~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g----------~i~~v~Q~ 160 (265)
++|++++|+.. .++++++||++++|++++|+||||||||||+++|+|+++|++|+|.++| .++|++|+
T Consensus 2 ~~~l~~~~~~~--~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~i~~~~q~ 79 (205)
T cd03226 2 IENISFSYKKG--TEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNGKPIKAKERRKSIGYVMQD 79 (205)
T ss_pred cccEEEEeCCc--CceeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEhhhHHhhcceEEEecC
Confidence 67899999631 4689999999999999999999999999999999999999999999987 38999999
Q ss_pred C--CCccccHHHHHhcCCcc---cHHHHHHHHHHhcchhHHhcCCCCCccccCCCCCCCCHHHHHHHHHHHHHccCCCEE
Q psy1503 161 P--WIFAATIRQNILFGLPY---LRRRYADVIRVCALQDDFDSLPNGDFTVVGERGASLSGGQKARINLARAVYKNADIY 235 (265)
Q Consensus 161 ~--~l~~~ti~eni~~~~~~---~~~~~~~~~~~~~l~~~i~~l~~g~~t~vg~~g~~LSgGqrqRialARal~~~~~il 235 (265)
+ .+++.|++||+.++... ..++..++++.+++.+.... ....||||||||++|||||+.+|+++
T Consensus 80 ~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LS~G~~qrv~laral~~~p~ll 148 (205)
T cd03226 80 VDYQLFTDSVREELLLGLKELDAGNEQAETVLKDLDLYALKER-----------HPLSLSGGQKQRLAIAAALLSGKDLL 148 (205)
T ss_pred hhhhhhhccHHHHHhhhhhhcCccHHHHHHHHHHcCCchhcCC-----------CchhCCHHHHHHHHHHHHHHhCCCEE
Confidence 7 45678999999875421 22345666666666544333 34589999999999999999999999
Q ss_pred EEeCCCCCcCHHHHHHHHHHHHHHH
Q psy1503 236 LLDDPLSAVDMHVGKHLFEDCISGC 260 (265)
Q Consensus 236 lLDEp~s~LD~~~~~~i~~~~i~~~ 260 (265)
||||||++||+.+.+.+.+ .+..+
T Consensus 149 llDEPt~~LD~~~~~~l~~-~l~~~ 172 (205)
T cd03226 149 IFDEPTSGLDYKNMERVGE-LIREL 172 (205)
T ss_pred EEeCCCccCCHHHHHHHHH-HHHHH
Confidence 9999999999999988855 45444
No 83
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=4.2e-39 Score=278.92 Aligned_cols=160 Identities=29% Similarity=0.454 Sum_probs=131.1
Q ss_pred EEEEeEEEEeCCCC-CCcceeeceEEEcCCcEEEEEcCCCChHHHHHHHHhcCcCCCccEEEEcC--------eEEEEec
Q psy1503 89 VSLDNVTAQWSLQN-ADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSLGG--------TVSYASQ 159 (265)
Q Consensus 89 i~~~~~~~~~~~~~-~~~~l~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g--------~i~~v~Q 159 (265)
++++|++++|+... ..++++++||+|++|++++|+||||||||||+++|+|+++|++|+|.++| .++|++|
T Consensus 1 l~~~~l~~~~~~~~~~~~il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~i~~v~q 80 (220)
T cd03293 1 LEVRNVSKTYGGGGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGEVLVDGEPVTGPGPDRGYVFQ 80 (220)
T ss_pred CeEEEEEEEcCCCCcceEEEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccccCcEEEEec
Confidence 46899999996311 14699999999999999999999999999999999999999999999987 3899999
Q ss_pred CCCCcc-ccHHHHHhcCCc---cc----HHHHHHHHHHhcchhHHhcCCCCCccccCCCCCCCCHHHHHHHHHHHHHccC
Q psy1503 160 EPWIFA-ATIRQNILFGLP---YL----RRRYADVIRVCALQDDFDSLPNGDFTVVGERGASLSGGQKARINLARAVYKN 231 (265)
Q Consensus 160 ~~~l~~-~ti~eni~~~~~---~~----~~~~~~~~~~~~l~~~i~~l~~g~~t~vg~~g~~LSgGqrqRialARal~~~ 231 (265)
++.+|+ .|++||+.++.. .. .++..++++.+++.+.+. ....+||||||||++|||||+.+
T Consensus 81 ~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LSgG~~qrl~la~al~~~ 149 (220)
T cd03293 81 QDALLPWLTVLDNVALGLELQGVPKAEARERAEELLELVGLSGFEN-----------AYPHQLSGGMRQRVALARALAVD 149 (220)
T ss_pred ccccccCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhh-----------CCcccCCHHHHHHHHHHHHHHcC
Confidence 999887 699999986531 11 223444555555544333 34468999999999999999999
Q ss_pred CCEEEEeCCCCCcCHHHHHHHHHHHHHHH
Q psy1503 232 ADIYLLDDPLSAVDMHVGKHLFEDCISGC 260 (265)
Q Consensus 232 ~~illLDEp~s~LD~~~~~~i~~~~i~~~ 260 (265)
|+++||||||++||+.+...+++ .+..+
T Consensus 150 p~lllLDEPt~~LD~~~~~~~~~-~l~~~ 177 (220)
T cd03293 150 PDVLLLDEPFSALDALTREQLQE-ELLDI 177 (220)
T ss_pred CCEEEECCCCCCCCHHHHHHHHH-HHHHH
Confidence 99999999999999999998866 44444
No 84
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=4.7e-39 Score=281.28 Aligned_cols=157 Identities=27% Similarity=0.412 Sum_probs=128.5
Q ss_pred EEEEeEEEEeCCCCCCcceeeceEEEcCCcEEEEEcCCCChHHHHHHHHhcCcCCCccEEEEcCe---------------
Q psy1503 89 VSLDNVTAQWSLQNADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSLGGT--------------- 153 (265)
Q Consensus 89 i~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g~--------------- 153 (265)
++++|++++|+. .++++|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.
T Consensus 1 l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~~ 77 (235)
T cd03261 1 IELRGLTKSFGG---RTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDISGLSEAELYRLRR 77 (235)
T ss_pred CeEEEEEEEECC---EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccChhhHHHHhc
Confidence 468999999963 46899999999999999999999999999999999999999999999872
Q ss_pred -EEEEecCCCCccc-cHHHHHhcCCc----ccH----HHHHHHHHHhcchhHHhcCCCCCccccCCCCCCCCHHHHHHHH
Q psy1503 154 -VSYASQEPWIFAA-TIRQNILFGLP----YLR----RRYADVIRVCALQDDFDSLPNGDFTVVGERGASLSGGQKARIN 223 (265)
Q Consensus 154 -i~~v~Q~~~l~~~-ti~eni~~~~~----~~~----~~~~~~~~~~~l~~~i~~l~~g~~t~vg~~g~~LSgGqrqRia 223 (265)
++|++|++.+|+. |++||+.++.. ... ++..++++.+++.+. ......+||||||||++
T Consensus 78 ~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LSgG~~qrv~ 146 (235)
T cd03261 78 RMGMLFQSGALFDSLTVFENVAFPLREHTRLSEEEIREIVLEKLEAVGLRGA-----------EDLYPAELSGGMKKRVA 146 (235)
T ss_pred ceEEEccCcccCCCCcHHHHHHHHHhhccCCCHHHHHHHHHHHHHHcCCchh-----------hcCChhhCCHHHHHHHH
Confidence 8999999999875 99999987521 111 223334444444322 23445689999999999
Q ss_pred HHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHH
Q psy1503 224 LARAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGC 260 (265)
Q Consensus 224 lARal~~~~~illLDEp~s~LD~~~~~~i~~~~i~~~ 260 (265)
|||||+.+|+++||||||++||+.+...+++ .+..+
T Consensus 147 ia~al~~~p~llllDEPt~~LD~~~~~~l~~-~l~~~ 182 (235)
T cd03261 147 LARALALDPELLLYDEPTAGLDPIASGVIDD-LIRSL 182 (235)
T ss_pred HHHHHhcCCCEEEecCCcccCCHHHHHHHHH-HHHHH
Confidence 9999999999999999999999999988865 44444
No 85
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=100.00 E-value=7.9e-39 Score=297.81 Aligned_cols=162 Identities=27% Similarity=0.421 Sum_probs=136.5
Q ss_pred CCcEEEEeEEEEeCCCCCCcceeeceEEEcCCcEEEEEcCCCChHHHHHHHHhcCcCCCccEEEEcCe-----------E
Q psy1503 86 KGHVSLDNVTAQWSLQNADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSLGGT-----------V 154 (265)
Q Consensus 86 ~~~i~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g~-----------i 154 (265)
...++++|++++|+. ..+|+++||++++|++++|+||||||||||+++|+|+++|++|+|.++|. +
T Consensus 12 ~~~L~l~~l~~~~~~---~~~l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~~r~i 88 (375)
T PRK09452 12 SPLVELRGISKSFDG---KEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRIMLDGQDITHVPAENRHV 88 (375)
T ss_pred CceEEEEEEEEEECC---eEEEeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHCCE
Confidence 446999999999963 45899999999999999999999999999999999999999999999984 9
Q ss_pred EEEecCCCCcc-ccHHHHHhcCCcc---c----HHHHHHHHHHhcchhHHhcCCCCCccccCCCCCCCCHHHHHHHHHHH
Q psy1503 155 SYASQEPWIFA-ATIRQNILFGLPY---L----RRRYADVIRVCALQDDFDSLPNGDFTVVGERGASLSGGQKARINLAR 226 (265)
Q Consensus 155 ~~v~Q~~~l~~-~ti~eni~~~~~~---~----~~~~~~~~~~~~l~~~i~~l~~g~~t~vg~~g~~LSgGqrqRialAR 226 (265)
+|++|++.+|+ .||.|||.|+... . .++..++++..++.+.++.. ..+|||||||||+|||
T Consensus 89 g~vfQ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------p~~LSgGq~QRVaLAR 157 (375)
T PRK09452 89 NTVFQSYALFPHMTVFENVAFGLRMQKTPAAEITPRVMEALRMVQLEEFAQRK-----------PHQLSGGQQQRVAIAR 157 (375)
T ss_pred EEEecCcccCCCCCHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhhCC-----------hhhCCHHHHHHHHHHH
Confidence 99999999996 5999999987431 1 22344556666665554444 4689999999999999
Q ss_pred HHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHHhh
Q psy1503 227 AVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGCLT 262 (265)
Q Consensus 227 al~~~~~illLDEp~s~LD~~~~~~i~~~~i~~~l~ 262 (265)
||+.+|+++|||||||+||..++..+.+ .+..+.+
T Consensus 158 aL~~~P~llLLDEP~s~LD~~~r~~l~~-~L~~l~~ 192 (375)
T PRK09452 158 AVVNKPKVLLLDESLSALDYKLRKQMQN-ELKALQR 192 (375)
T ss_pred HHhcCCCEEEEeCCCCcCCHHHHHHHHH-HHHHHHH
Confidence 9999999999999999999999988755 4445443
No 86
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1e-38 Score=279.00 Aligned_cols=161 Identities=24% Similarity=0.404 Sum_probs=131.4
Q ss_pred cEEEEeEEEEeCCCC-CCcceeeceEEEcCCcEEEEEcCCCChHHHHHHHHhcCcCCCccEEEEcC--------------
Q psy1503 88 HVSLDNVTAQWSLQN-ADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSLGG-------------- 152 (265)
Q Consensus 88 ~i~~~~~~~~~~~~~-~~~~l~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g-------------- 152 (265)
.++++|++++|+... ..++|+++||+|++|++++|+||||||||||+++|+|+++|++|+|.++|
T Consensus 5 ~l~~~~l~~~~~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~ 84 (233)
T PRK11629 5 LLQCDNLCKRYQEGSVQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMSKLSSAAKAEL 84 (233)
T ss_pred eEEEEeEEEEcCCCCcceeeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCHHHHHHH
Confidence 689999999996421 14699999999999999999999999999999999999999999999987
Q ss_pred ---eEEEEecCCCCccc-cHHHHHhcCCc---cc----HHHHHHHHHHhcchhHHhcCCCCCccccCCCCCCCCHHHHHH
Q psy1503 153 ---TVSYASQEPWIFAA-TIRQNILFGLP---YL----RRRYADVIRVCALQDDFDSLPNGDFTVVGERGASLSGGQKAR 221 (265)
Q Consensus 153 ---~i~~v~Q~~~l~~~-ti~eni~~~~~---~~----~~~~~~~~~~~~l~~~i~~l~~g~~t~vg~~g~~LSgGqrqR 221 (265)
.++|++|++.+|+. |++||+.++.. .. .++..++++.+++.+ .......+||||||||
T Consensus 85 ~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~-----------~~~~~~~~LSgG~~qr 153 (233)
T PRK11629 85 RNQKLGFIYQFHHLLPDFTALENVAMPLLIGKKKPAEINSRALEMLAAVGLEH-----------RANHRPSELSGGERQR 153 (233)
T ss_pred HhccEEEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCch-----------hhhCChhhCCHHHHHH
Confidence 28999999998875 99999986321 11 123344444444432 2334567899999999
Q ss_pred HHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHH
Q psy1503 222 INLARAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGC 260 (265)
Q Consensus 222 ialARal~~~~~illLDEp~s~LD~~~~~~i~~~~i~~~ 260 (265)
++||||++.+|+++||||||++||+.+...+.+ .+..+
T Consensus 154 l~la~al~~~p~lllLDEPt~~LD~~~~~~l~~-~l~~~ 191 (233)
T PRK11629 154 VAIARALVNNPRLVLADEPTGNLDARNADSIFQ-LLGEL 191 (233)
T ss_pred HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHH-HHHHH
Confidence 999999999999999999999999999988865 44444
No 87
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=100.00 E-value=6.1e-39 Score=276.48 Aligned_cols=155 Identities=31% Similarity=0.532 Sum_probs=128.5
Q ss_pred EEeEEEEeCCCCCCcceeeceEEEcCCcEEEEEcCCCChHHHHHHHHhcCcCCCccEEEEcCe--------EEEEecCCC
Q psy1503 91 LDNVTAQWSLQNADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSLGGT--------VSYASQEPW 162 (265)
Q Consensus 91 ~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g~--------i~~v~Q~~~ 162 (265)
++|++++|++ .++++++||+|++|++++|+||||||||||+++|+|+++|++|+|.++|. ++|++|++.
T Consensus 2 ~~~l~~~~~~---~~~l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~i~~v~q~~~ 78 (213)
T cd03235 2 VEDLTVSYGG---HPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFGKPLEKERKRIGYVPQRRS 78 (213)
T ss_pred cccceeEECC---EEeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCccHHHHHhheEEeccccc
Confidence 6789999963 45899999999999999999999999999999999999999999999983 999999987
Q ss_pred C---ccccHHHHHhcCCcc-----------cHHHHHHHHHHhcchhHHhcCCCCCccccCCCCCCCCHHHHHHHHHHHHH
Q psy1503 163 I---FAATIRQNILFGLPY-----------LRRRYADVIRVCALQDDFDSLPNGDFTVVGERGASLSGGQKARINLARAV 228 (265)
Q Consensus 163 l---~~~ti~eni~~~~~~-----------~~~~~~~~~~~~~l~~~i~~l~~g~~t~vg~~g~~LSgGqrqRialARal 228 (265)
+ ++.|++||+.++... ..++..++++.+++.+.+. ....+||||||||++|||||
T Consensus 79 ~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LSgG~~qrv~la~al 147 (213)
T cd03235 79 IDRDFPISVRDVVLMGLYGHKGLFRRLSKADKAKVDEALERVGLSELAD-----------RQIGELSGGQQQRVLLARAL 147 (213)
T ss_pred cccCCCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCHHHHh-----------CCcccCCHHHHHHHHHHHHH
Confidence 6 457999999875321 1223445555556654333 34468999999999999999
Q ss_pred ccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHH
Q psy1503 229 YKNADIYLLDDPLSAVDMHVGKHLFEDCISGC 260 (265)
Q Consensus 229 ~~~~~illLDEp~s~LD~~~~~~i~~~~i~~~ 260 (265)
+.+|+++||||||++||+.+...+.+ .+..+
T Consensus 148 ~~~p~llllDEPt~~LD~~~~~~l~~-~l~~~ 178 (213)
T cd03235 148 VQDPDLLLLDEPFAGVDPKTQEDIYE-LLREL 178 (213)
T ss_pred HcCCCEEEEeCCcccCCHHHHHHHHH-HHHHH
Confidence 99999999999999999999988865 44443
No 88
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=100.00 E-value=7.3e-39 Score=296.16 Aligned_cols=160 Identities=33% Similarity=0.503 Sum_probs=134.3
Q ss_pred cEEEEeEEEEeCCCCCCcceeeceEEEcCCcEEEEEcCCCChHHHHHHHHhcCcCCCccEEEEcCe-----------EEE
Q psy1503 88 HVSLDNVTAQWSLQNADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSLGGT-----------VSY 156 (265)
Q Consensus 88 ~i~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g~-----------i~~ 156 (265)
.|+++|++++|+. ..+|+|+||++++|++++|+||||||||||+++|+|+.+|++|+|.++|. ++|
T Consensus 4 ~l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~~r~ig~ 80 (353)
T TIGR03265 4 YLSIDNIRKRFGA---FTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDITRLPPQKRDYGI 80 (353)
T ss_pred EEEEEEEEEEeCC---eEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEE
Confidence 5899999999963 45899999999999999999999999999999999999999999999983 999
Q ss_pred EecCCCCcc-ccHHHHHhcCCcc---c----HHHHHHHHHHhcchhHHhcCCCCCccccCCCCCCCCHHHHHHHHHHHHH
Q psy1503 157 ASQEPWIFA-ATIRQNILFGLPY---L----RRRYADVIRVCALQDDFDSLPNGDFTVVGERGASLSGGQKARINLARAV 228 (265)
Q Consensus 157 v~Q~~~l~~-~ti~eni~~~~~~---~----~~~~~~~~~~~~l~~~i~~l~~g~~t~vg~~g~~LSgGqrqRialARal 228 (265)
++|++.+|+ .|++||+.|+... + .++..++++..++.+.. ...+.+||||||||++|||||
T Consensus 81 v~Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~l~L~~~~-----------~~~~~~LSgGq~QRvaLARaL 149 (353)
T TIGR03265 81 VFQSYALFPNLTVADNIAYGLKNRGMGRAEVAERVAELLDLVGLPGSE-----------RKYPGQLSGGQQQRVALARAL 149 (353)
T ss_pred EeCCcccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCchh-----------hCChhhCCHHHHHHHHHHHHH
Confidence 999999996 6999999987421 1 22344455555554433 345579999999999999999
Q ss_pred ccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHHhh
Q psy1503 229 YKNADIYLLDDPLSAVDMHVGKHLFEDCISGCLT 262 (265)
Q Consensus 229 ~~~~~illLDEp~s~LD~~~~~~i~~~~i~~~l~ 262 (265)
+.+|+++|||||||+||+.++.++.+ .+..+.+
T Consensus 150 ~~~P~llLLDEP~s~LD~~~r~~l~~-~L~~l~~ 182 (353)
T TIGR03265 150 ATSPGLLLLDEPLSALDARVREHLRT-EIRQLQR 182 (353)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHH-HHHHHHH
Confidence 99999999999999999999998855 4444433
No 89
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=100.00 E-value=1e-38 Score=275.07 Aligned_cols=159 Identities=25% Similarity=0.456 Sum_probs=130.8
Q ss_pred cEEEEeEEEEeCCCCCCcceeeceEEEcCCcEEEEEcCCCChHHHHHHHHhcCcCCCccEEEEcCe--------------
Q psy1503 88 HVSLDNVTAQWSLQNADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSLGGT-------------- 153 (265)
Q Consensus 88 ~i~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g~-------------- 153 (265)
+++++|++++|+. ..++++|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.
T Consensus 1 ~l~~~~l~~~~~~--~~~il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~ 78 (214)
T TIGR02673 1 MIEFHNVSKAYPG--GVAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVRIAGEDVNRLRGRQLPLLR 78 (214)
T ss_pred CEEEEeeeEEeCC--CceeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHH
Confidence 3789999999952 246899999999999999999999999999999999999999999998772
Q ss_pred --EEEEecCCCCcc-ccHHHHHhcCCc---c----cHHHHHHHHHHhcchhHHhcCCCCCccccCCCCCCCCHHHHHHHH
Q psy1503 154 --VSYASQEPWIFA-ATIRQNILFGLP---Y----LRRRYADVIRVCALQDDFDSLPNGDFTVVGERGASLSGGQKARIN 223 (265)
Q Consensus 154 --i~~v~Q~~~l~~-~ti~eni~~~~~---~----~~~~~~~~~~~~~l~~~i~~l~~g~~t~vg~~g~~LSgGqrqRia 223 (265)
++|++|++.+|+ .|+.||+.++.. . ..+++.++++..++.+.+.. ...+||||||||++
T Consensus 79 ~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LS~G~~qrl~ 147 (214)
T TIGR02673 79 RRIGVVFQDFRLLPDRTVYENVALPLEVRGKKEREIQRRVGAALRQVGLEHKADA-----------FPEQLSGGEQQRVA 147 (214)
T ss_pred hheEEEecChhhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhC-----------ChhhCCHHHHHHHH
Confidence 899999999986 699999987521 1 12334455555555443332 34689999999999
Q ss_pred HHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHH
Q psy1503 224 LARAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGC 260 (265)
Q Consensus 224 lARal~~~~~illLDEp~s~LD~~~~~~i~~~~i~~~ 260 (265)
|||||+.+|+++||||||++||+.+...+++ .+..+
T Consensus 148 la~al~~~p~lllLDEPt~~LD~~~~~~l~~-~l~~~ 183 (214)
T TIGR02673 148 IARAIVNSPPLLLADEPTGNLDPDLSERILD-LLKRL 183 (214)
T ss_pred HHHHHhCCCCEEEEeCCcccCCHHHHHHHHH-HHHHH
Confidence 9999999999999999999999999988865 44443
No 90
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=100.00 E-value=1.2e-38 Score=277.19 Aligned_cols=159 Identities=30% Similarity=0.475 Sum_probs=129.9
Q ss_pred EEEEeEEEEeCCCCCCcceeeceEEEcCCcEEEEEcCCCChHHHHHHHHhcCc-----CCCccEEEEcCe----------
Q psy1503 89 VSLDNVTAQWSLQNADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNEL-----RISSGKVSLGGT---------- 153 (265)
Q Consensus 89 i~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~g~~-----~~~~G~i~~~g~---------- 153 (265)
|+++|++++|+. .++|+|+||+|++|++++|+||||||||||+++|+|++ +|++|+|.++|.
T Consensus 1 i~~~~l~~~~~~---~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~ 77 (227)
T cd03260 1 IELRDLNVYYGD---KHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGKDIYDLDVDVL 77 (227)
T ss_pred CEEEEEEEEcCC---ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCCeEEEECCEEhhhcchHHH
Confidence 478999999963 46899999999999999999999999999999999999 999999999872
Q ss_pred -----EEEEecCCCCccccHHHHHhcCCcc----c----HHHHHHHHHHhcchhHHhcCCCCCccccCCCCCCCCHHHHH
Q psy1503 154 -----VSYASQEPWIFAATIRQNILFGLPY----L----RRRYADVIRVCALQDDFDSLPNGDFTVVGERGASLSGGQKA 220 (265)
Q Consensus 154 -----i~~v~Q~~~l~~~ti~eni~~~~~~----~----~~~~~~~~~~~~l~~~i~~l~~g~~t~vg~~g~~LSgGqrq 220 (265)
++|++|++.+|+.|++||+.++... . .++..++++.+++.+.+...+. +.+|||||||
T Consensus 78 ~~~~~i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~---------~~~LSgG~~q 148 (227)
T cd03260 78 ELRRRVGMVFQKPNPFPGSIYDNVAYGLRLHGIKLKEELDERVEEALRKAALWDEVKDRLH---------ALGLSGGQQQ 148 (227)
T ss_pred HHHhhEEEEecCchhccccHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCChHHhccCC---------cccCCHHHHH
Confidence 7999999998878999999875321 1 1233445555555443322110 4689999999
Q ss_pred HHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHH
Q psy1503 221 RINLARAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGC 260 (265)
Q Consensus 221 RialARal~~~~~illLDEp~s~LD~~~~~~i~~~~i~~~ 260 (265)
|++|||||+.+|+++||||||++||+.+...+++ .+..+
T Consensus 149 rv~la~al~~~p~llllDEPt~~LD~~~~~~l~~-~l~~~ 187 (227)
T cd03260 149 RLCLARALANEPEVLLLDEPTSALDPISTAKIEE-LIAEL 187 (227)
T ss_pred HHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHH-HHHHH
Confidence 9999999999999999999999999999988865 44443
No 91
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.5e-38 Score=274.02 Aligned_cols=159 Identities=28% Similarity=0.445 Sum_probs=133.3
Q ss_pred cEEEEeEEEEeCCCC-CCcceeeceEEEcCCcEEEEEcCCCChHHHHHHHHhcCcCCCccEEEEcCe-------------
Q psy1503 88 HVSLDNVTAQWSLQN-ADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSLGGT------------- 153 (265)
Q Consensus 88 ~i~~~~~~~~~~~~~-~~~~l~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g~------------- 153 (265)
+++++|+++.|+... ..+++++|||+|.+||.++|+|+||||||||.++|+|+.+|++|+|.++|.
T Consensus 3 ~l~v~nl~~~y~~~~~~~~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p~~G~I~~~G~~~~~~~~~~~~~~ 82 (252)
T COG1124 3 LLSVRNLSIVYGGGKFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSSGSILLDGKPLAPKKRAKAFYR 82 (252)
T ss_pred eEEEeceEEEecCCcchhhhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCcccCccccchhhcc
Confidence 689999999997531 125899999999999999999999999999999999999999999999993
Q ss_pred -EEEEecCCC--Ccc-ccHHHHHhcCC-----cccHHHHHHHHHHhcchhH-HhcCCCCCccccCCCCCCCCHHHHHHHH
Q psy1503 154 -VSYASQEPW--IFA-ATIRQNILFGL-----PYLRRRYADVIRVCALQDD-FDSLPNGDFTVVGERGASLSGGQKARIN 223 (265)
Q Consensus 154 -i~~v~Q~~~--l~~-~ti~eni~~~~-----~~~~~~~~~~~~~~~l~~~-i~~l~~g~~t~vg~~g~~LSgGqrqRia 223 (265)
|-+|+|||. +-+ .||++-|.=+. ...+.+..++++.+++.+. +.+.| .+||||||||||
T Consensus 83 ~VQmVFQDp~~SLnP~~tv~~~l~Epl~~~~~~~~~~~i~~~L~~VgL~~~~l~R~P-----------~eLSGGQ~QRia 151 (252)
T COG1124 83 PVQMVFQDPYSSLNPRRTVGRILSEPLRPHGLSKSQQRIAELLDQVGLPPSFLDRRP-----------HELSGGQRQRIA 151 (252)
T ss_pred ceeEEecCCccccCcchhHHHHHhhhhccCCccHHHHHHHHHHHHcCCCHHHHhcCc-----------hhcChhHHHHHH
Confidence 899999996 444 38887765332 2234456778888888654 44555 589999999999
Q ss_pred HHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHH
Q psy1503 224 LARAVYKNADIYLLDDPLSAVDMHVGKHLFEDCI 257 (265)
Q Consensus 224 lARal~~~~~illLDEp~s~LD~~~~~~i~~~~i 257 (265)
|||||..+|+++|||||||+||+.++.+|++-..
T Consensus 152 IARAL~~~PklLIlDEptSaLD~siQa~IlnlL~ 185 (252)
T COG1124 152 IARALIPEPKLLILDEPTSALDVSVQAQILNLLL 185 (252)
T ss_pred HHHHhccCCCEEEecCchhhhcHHHHHHHHHHHH
Confidence 9999999999999999999999999999987443
No 92
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=100.00 E-value=1.4e-38 Score=274.01 Aligned_cols=157 Identities=26% Similarity=0.487 Sum_probs=129.4
Q ss_pred EEEEeEEEEeCCCCCCcceeeceEEEcCCcEEEEEcCCCChHHHHHHHHhcCcCCCccEEEEcCe-----------EEEE
Q psy1503 89 VSLDNVTAQWSLQNADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSLGGT-----------VSYA 157 (265)
Q Consensus 89 i~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g~-----------i~~v 157 (265)
|+++|++++|+. +++++|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|. ++|+
T Consensus 1 i~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~v~~~g~~~~~~~~~~~~i~~~ 77 (213)
T cd03301 1 VELENVTKRFGN---VTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIGGRDVTDLPPKDRDIAMV 77 (213)
T ss_pred CEEEeeEEEECC---eeeeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCcccceEEEE
Confidence 468999999963 46899999999999999999999999999999999999999999999872 8999
Q ss_pred ecCCCCcc-ccHHHHHhcCCc---cc----HHHHHHHHHHhcchhHHhcCCCCCccccCCCCCCCCHHHHHHHHHHHHHc
Q psy1503 158 SQEPWIFA-ATIRQNILFGLP---YL----RRRYADVIRVCALQDDFDSLPNGDFTVVGERGASLSGGQKARINLARAVY 229 (265)
Q Consensus 158 ~Q~~~l~~-~ti~eni~~~~~---~~----~~~~~~~~~~~~l~~~i~~l~~g~~t~vg~~g~~LSgGqrqRialARal~ 229 (265)
+|++.+++ .|++||+.++.. .. .+++.++++..++.+.+ .....+||||||||++||||++
T Consensus 78 ~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LS~G~~qr~~laral~ 146 (213)
T cd03301 78 FQNYALYPHMTVYDNIAFGLKLRKVPKDEIDERVREVAELLQIEHLL-----------DRKPKQLSGGQRQRVALGRAIV 146 (213)
T ss_pred ecChhhccCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHH-----------hCChhhCCHHHHHHHHHHHHHh
Confidence 99999885 599999987521 11 12233444444444333 3445789999999999999999
Q ss_pred cCCCEEEEeCCCCCcCHHHHHHHHHHHHHHH
Q psy1503 230 KNADIYLLDDPLSAVDMHVGKHLFEDCISGC 260 (265)
Q Consensus 230 ~~~~illLDEp~s~LD~~~~~~i~~~~i~~~ 260 (265)
.+|+++||||||++||+.+...+++ .+..+
T Consensus 147 ~~p~llllDEPt~~LD~~~~~~l~~-~l~~~ 176 (213)
T cd03301 147 REPKVFLMDEPLSNLDAKLRVQMRA-ELKRL 176 (213)
T ss_pred cCCCEEEEcCCcccCCHHHHHHHHH-HHHHH
Confidence 9999999999999999999988865 44444
No 93
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=100.00 E-value=1.6e-38 Score=273.67 Aligned_cols=158 Identities=23% Similarity=0.442 Sum_probs=129.9
Q ss_pred EEEEeEEEEeCCCCCCcceeeceEEEcCCcEEEEEcCCCChHHHHHHHHhcCcCCCccEEEEcCe---------------
Q psy1503 89 VSLDNVTAQWSLQNADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSLGGT--------------- 153 (265)
Q Consensus 89 i~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g~--------------- 153 (265)
++++|++++|+.. .++++|+||++++|++++|+||||||||||+++|+|+++|++|+|.++|.
T Consensus 1 l~~~~l~~~~~~~--~~~l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~ 78 (214)
T cd03292 1 IEFINVTKTYPNG--TAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVSDLRGRAIPYLRR 78 (214)
T ss_pred CEEEEEEEEeCCC--ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHHHH
Confidence 4689999999532 46899999999999999999999999999999999999999999999872
Q ss_pred -EEEEecCCCCcc-ccHHHHHhcCCc---cc----HHHHHHHHHHhcchhHHhcCCCCCccccCCCCCCCCHHHHHHHHH
Q psy1503 154 -VSYASQEPWIFA-ATIRQNILFGLP---YL----RRRYADVIRVCALQDDFDSLPNGDFTVVGERGASLSGGQKARINL 224 (265)
Q Consensus 154 -i~~v~Q~~~l~~-~ti~eni~~~~~---~~----~~~~~~~~~~~~l~~~i~~l~~g~~t~vg~~g~~LSgGqrqRial 224 (265)
++|++|++.+|+ .|++||+.++.. .. .+++.++++.+++.+..+ ....+||||||||++|
T Consensus 79 ~i~~v~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~qrv~l 147 (214)
T cd03292 79 KIGVVFQDFRLLPDRNVYENVAFALEVTGVPPREIRKRVPAALELVGLSHKHR-----------ALPAELSGGEQQRVAI 147 (214)
T ss_pred heEEEecCchhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhh-----------CChhhcCHHHHHHHHH
Confidence 899999999987 599999987531 11 123344555555544333 3346899999999999
Q ss_pred HHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHH
Q psy1503 225 ARAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGC 260 (265)
Q Consensus 225 ARal~~~~~illLDEp~s~LD~~~~~~i~~~~i~~~ 260 (265)
||||+.+|+++||||||++||+.+...+.+ .+..+
T Consensus 148 aral~~~p~llllDEPt~~LD~~~~~~~~~-~l~~~ 182 (214)
T cd03292 148 ARAIVNSPTILIADEPTGNLDPDTTWEIMN-LLKKI 182 (214)
T ss_pred HHHHHcCCCEEEEeCCCCcCCHHHHHHHHH-HHHHH
Confidence 999999999999999999999999988755 44443
No 94
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=100.00 E-value=1.5e-38 Score=274.86 Aligned_cols=160 Identities=23% Similarity=0.396 Sum_probs=130.8
Q ss_pred EEEEeEEEEeCCCCC-CcceeeceEEEcCCcEEEEEcCCCChHHHHHHHHhcCcCCCccEEEEcCe------------EE
Q psy1503 89 VSLDNVTAQWSLQNA-DLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSLGGT------------VS 155 (265)
Q Consensus 89 i~~~~~~~~~~~~~~-~~~l~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g~------------i~ 155 (265)
++++|++++|+.... .++++++||+|++|++++|+|+||||||||+++|+|+++|++|+|.++|. ++
T Consensus 2 l~~~~v~~~~~~~~~~~~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i~ 81 (218)
T cd03266 2 ITADALTKRFRDVKKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFDVVKEPAEARRRLG 81 (218)
T ss_pred eEEEEEEEecCCCCccceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEEcccCHHHHHhhEE
Confidence 789999999964211 16999999999999999999999999999999999999999999999872 89
Q ss_pred EEecCCCCccc-cHHHHHhcCCc---cc----HHHHHHHHHHhcchhHHhcCCCCCccccCCCCCCCCHHHHHHHHHHHH
Q psy1503 156 YASQEPWIFAA-TIRQNILFGLP---YL----RRRYADVIRVCALQDDFDSLPNGDFTVVGERGASLSGGQKARINLARA 227 (265)
Q Consensus 156 ~v~Q~~~l~~~-ti~eni~~~~~---~~----~~~~~~~~~~~~l~~~i~~l~~g~~t~vg~~g~~LSgGqrqRialARa 227 (265)
|++|++.+|+. |++||+.+... .. .++..++++..++.+. ......+||||||||++||||
T Consensus 82 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LS~G~~qrv~lara 150 (218)
T cd03266 82 FVSDSTGLYDRLTARENLEYFAGLYGLKGDELTARLEELADRLGMEEL-----------LDRRVGGFSTGMRQKVAIARA 150 (218)
T ss_pred EecCCcccCcCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHH-----------HhhhhhhcCHHHHHHHHHHHH
Confidence 99999999874 99999976321 11 1233444555555433 334567899999999999999
Q ss_pred HccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHH
Q psy1503 228 VYKNADIYLLDDPLSAVDMHVGKHLFEDCISGC 260 (265)
Q Consensus 228 l~~~~~illLDEp~s~LD~~~~~~i~~~~i~~~ 260 (265)
++.+|+++||||||++||+.+.+.+++ .+..+
T Consensus 151 l~~~p~illlDEPt~~LD~~~~~~l~~-~l~~~ 182 (218)
T cd03266 151 LVHDPPVLLLDEPTTGLDVMATRALRE-FIRQL 182 (218)
T ss_pred HhcCCCEEEEcCCCcCCCHHHHHHHHH-HHHHH
Confidence 999999999999999999999988765 44444
No 95
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=100.00 E-value=2.3e-38 Score=274.19 Aligned_cols=161 Identities=23% Similarity=0.407 Sum_probs=130.1
Q ss_pred EEEEeEEEEeCCCC-CCcceeeceEEEcCCcEEEEEcCCCChHHHHHHHHhcCcCCCccEEEEcC---------------
Q psy1503 89 VSLDNVTAQWSLQN-ADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSLGG--------------- 152 (265)
Q Consensus 89 i~~~~~~~~~~~~~-~~~~l~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g--------------- 152 (265)
++++|++++|+... ..++++++||++++|++++|+||||||||||+++|+|+++|++|+|.++|
T Consensus 2 l~~~~v~~~~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (221)
T TIGR02211 2 LKCENLGKRYQEGKLDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGEVLFNGQSLSKLSSNERAKLR 81 (221)
T ss_pred EEEEeeeEEccCCCcceEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcCHhHHHHHH
Confidence 68999999996321 14689999999999999999999999999999999999999999999976
Q ss_pred --eEEEEecCCCCcc-ccHHHHHhcCCc---cc----HHHHHHHHHHhcchhHHhcCCCCCccccCCCCCCCCHHHHHHH
Q psy1503 153 --TVSYASQEPWIFA-ATIRQNILFGLP---YL----RRRYADVIRVCALQDDFDSLPNGDFTVVGERGASLSGGQKARI 222 (265)
Q Consensus 153 --~i~~v~Q~~~l~~-~ti~eni~~~~~---~~----~~~~~~~~~~~~l~~~i~~l~~g~~t~vg~~g~~LSgGqrqRi 222 (265)
.++|++|++.+|+ .|++||+.++.. .. .++..++++.+++.+. .......||||||||+
T Consensus 82 ~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LS~G~~qrv 150 (221)
T TIGR02211 82 NKKLGFIYQFHHLLPDFTALENVAMPLLIGKKSVKEAKERAYEMLEKVGLEHR-----------INHRPSELSGGERQRV 150 (221)
T ss_pred HhcEEEEecccccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhh-----------hhCChhhCCHHHHHHH
Confidence 2899999999886 599999986421 11 1223344444444332 3344578999999999
Q ss_pred HHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHHh
Q psy1503 223 NLARAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGCL 261 (265)
Q Consensus 223 alARal~~~~~illLDEp~s~LD~~~~~~i~~~~i~~~l 261 (265)
+|||||+.+|+++||||||++||+.+...+.+ .+..+.
T Consensus 151 ~laral~~~p~illlDEPt~~LD~~~~~~l~~-~l~~~~ 188 (221)
T TIGR02211 151 AIARALVNQPSLVLADEPTGNLDNNNAKIIFD-LMLELN 188 (221)
T ss_pred HHHHHHhCCCCEEEEeCCCCcCCHHHHHHHHH-HHHHHH
Confidence 99999999999999999999999999988865 444443
No 96
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.8e-38 Score=284.85 Aligned_cols=162 Identities=30% Similarity=0.446 Sum_probs=134.0
Q ss_pred cEEEEeEEEEeCCCCCCcceeeceEEEcCCcEEEEEcCCCChHHHHHHHHhcCcCCCccEEEEcCe-------------E
Q psy1503 88 HVSLDNVTAQWSLQNADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSLGGT-------------V 154 (265)
Q Consensus 88 ~i~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g~-------------i 154 (265)
.++++|++++|++....++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|. +
T Consensus 4 ~l~~~~l~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i 83 (279)
T PRK13650 4 IIEVKNLTFKYKEDQEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQIIIDGDLLTEENVWDIRHKI 83 (279)
T ss_pred eEEEEeEEEEcCCCCcCeeeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHHhhc
Confidence 589999999996432245999999999999999999999999999999999999999999999883 8
Q ss_pred EEEecCCC--CccccHHHHHhcCCc---cc----HHHHHHHHHHhcchhHHhcCCCCCccccCCCCCCCCHHHHHHHHHH
Q psy1503 155 SYASQEPW--IFAATIRQNILFGLP---YL----RRRYADVIRVCALQDDFDSLPNGDFTVVGERGASLSGGQKARINLA 225 (265)
Q Consensus 155 ~~v~Q~~~--l~~~ti~eni~~~~~---~~----~~~~~~~~~~~~l~~~i~~l~~g~~t~vg~~g~~LSgGqrqRialA 225 (265)
+|++|+|. ++..|++|||.++.. .+ .++..++++.+++.+..+. ...+||||||||++||
T Consensus 84 ~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~-----------~~~~LSgGq~qrv~lA 152 (279)
T PRK13650 84 GMVFQNPDNQFVGATVEDDVAFGLENKGIPHEEMKERVNEALELVGMQDFKER-----------EPARLSGGQKQRVAIA 152 (279)
T ss_pred eEEEcChHHhcccccHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCCHhHhhC-----------CcccCCHHHHHHHHHH
Confidence 99999984 456799999998632 11 2344556666666544433 3468999999999999
Q ss_pred HHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHHh
Q psy1503 226 RAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGCL 261 (265)
Q Consensus 226 Ral~~~~~illLDEp~s~LD~~~~~~i~~~~i~~~l 261 (265)
|||+.+|+++||||||++||+.+.+.+++ .+..+.
T Consensus 153 ral~~~p~lLlLDEPt~~LD~~~~~~l~~-~l~~l~ 187 (279)
T PRK13650 153 GAVAMRPKIIILDEATSMLDPEGRLELIK-TIKGIR 187 (279)
T ss_pred HHHHcCCCEEEEECCcccCCHHHHHHHHH-HHHHHH
Confidence 99999999999999999999999988865 444443
No 97
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.3e-38 Score=277.69 Aligned_cols=159 Identities=30% Similarity=0.482 Sum_probs=130.6
Q ss_pred cEEEEeEEEEeCCCCCCcceeeceEEEcCCcEEEEEcCCCChHHHHHHHHhcCcCCCccEEEEcCe-----------EEE
Q psy1503 88 HVSLDNVTAQWSLQNADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSLGGT-----------VSY 156 (265)
Q Consensus 88 ~i~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g~-----------i~~ 156 (265)
.++++|++++|+. .++|+|+||++++|++++|+||||||||||+++|+|+++|++|+|.++|. ++|
T Consensus 2 ~l~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i~~ 78 (239)
T cd03296 2 SIEVRNVSKRFGD---FVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDATDVPVQERNVGF 78 (239)
T ss_pred EEEEEeEEEEECC---EEeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCccccceEE
Confidence 4789999999963 46999999999999999999999999999999999999999999999872 899
Q ss_pred EecCCCCcc-ccHHHHHhcCCcc-------cH----HHHHHHHHHhcchhHHhcCCCCCccccCCCCCCCCHHHHHHHHH
Q psy1503 157 ASQEPWIFA-ATIRQNILFGLPY-------LR----RRYADVIRVCALQDDFDSLPNGDFTVVGERGASLSGGQKARINL 224 (265)
Q Consensus 157 v~Q~~~l~~-~ti~eni~~~~~~-------~~----~~~~~~~~~~~l~~~i~~l~~g~~t~vg~~g~~LSgGqrqRial 224 (265)
++|++.+++ .|++||+.++... .. ++..++++.+++.+. ......+||||||||++|
T Consensus 79 v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LS~G~~qrl~l 147 (239)
T cd03296 79 VFQHYALFRHMTVFDNVAFGLRVKPRSERPPEAEIRAKVHELLKLVQLDWL-----------ADRYPAQLSGGQRQRVAL 147 (239)
T ss_pred EecCCcccCCCCHHHHHhhhhhhccccccCCHHHHHHHHHHHHHHcCChhh-----------hhcChhhCCHHHHHHHHH
Confidence 999999886 5999999875321 11 122333444444322 234457899999999999
Q ss_pred HHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHHh
Q psy1503 225 ARAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGCL 261 (265)
Q Consensus 225 ARal~~~~~illLDEp~s~LD~~~~~~i~~~~i~~~l 261 (265)
||||+.+|+++||||||++||+.+.+.+++ .+..+.
T Consensus 148 a~al~~~p~llllDEP~~~LD~~~~~~l~~-~l~~~~ 183 (239)
T cd03296 148 ARALAVEPKVLLLDEPFGALDAKVRKELRR-WLRRLH 183 (239)
T ss_pred HHHHhcCCCEEEEcCCcccCCHHHHHHHHH-HHHHHH
Confidence 999999999999999999999999988865 454443
No 98
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=100.00 E-value=4.2e-38 Score=279.54 Aligned_cols=159 Identities=26% Similarity=0.411 Sum_probs=133.8
Q ss_pred CcEEEEeEEEEeCCCCCCcceeeceEEEcCCcEEEEEcCCCChHHHHHHHHhcCcCCCccEEEEcCe--------EEEEe
Q psy1503 87 GHVSLDNVTAQWSLQNADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSLGGT--------VSYAS 158 (265)
Q Consensus 87 ~~i~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g~--------i~~v~ 158 (265)
..|+++|++++|+. .++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|. ++|++
T Consensus 11 ~~l~i~~l~~~~~~---~~il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~i~~v~ 87 (257)
T PRK11247 11 TPLLLNAVSKRYGE---RTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGELLAGTAPLAEAREDTRLMF 87 (257)
T ss_pred CcEEEEEEEEEECC---cceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEHHHhhCceEEEe
Confidence 46999999999963 46899999999999999999999999999999999999999999999873 89999
Q ss_pred cCCCCcc-ccHHHHHhcCCcc-cHHHHHHHHHHhcchhHHhcCCCCCccccCCCCCCCCHHHHHHHHHHHHHccCCCEEE
Q psy1503 159 QEPWIFA-ATIRQNILFGLPY-LRRRYADVIRVCALQDDFDSLPNGDFTVVGERGASLSGGQKARINLARAVYKNADIYL 236 (265)
Q Consensus 159 Q~~~l~~-~ti~eni~~~~~~-~~~~~~~~~~~~~l~~~i~~l~~g~~t~vg~~g~~LSgGqrqRialARal~~~~~ill 236 (265)
|++.+|+ .|++||+.++... ..++..++++..++.+.. .....+||||||||++|||||+.+|+++|
T Consensus 88 q~~~l~~~~tv~enl~~~~~~~~~~~~~~~l~~~gl~~~~-----------~~~~~~LSgGqkqrl~laraL~~~p~lll 156 (257)
T PRK11247 88 QDARLLPWKKVIDNVGLGLKGQWRDAALQALAAVGLADRA-----------NEWPAALSGGQKQRVALARALIHRPGLLL 156 (257)
T ss_pred cCccCCCCCcHHHHHHhcccchHHHHHHHHHHHcCChhHh-----------cCChhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 9999887 6999999876321 223445555555554332 34557999999999999999999999999
Q ss_pred EeCCCCCcCHHHHHHHHHHHHHHH
Q psy1503 237 LDDPLSAVDMHVGKHLFEDCISGC 260 (265)
Q Consensus 237 LDEp~s~LD~~~~~~i~~~~i~~~ 260 (265)
|||||++||+.+...+.+ .+..+
T Consensus 157 LDEPt~~LD~~~~~~l~~-~L~~~ 179 (257)
T PRK11247 157 LDEPLGALDALTRIEMQD-LIESL 179 (257)
T ss_pred EeCCCCCCCHHHHHHHHH-HHHHH
Confidence 999999999999988865 44444
No 99
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=100.00 E-value=1.8e-38 Score=272.94 Aligned_cols=158 Identities=29% Similarity=0.473 Sum_probs=127.6
Q ss_pred EEEeEEEEeCCCCCCcceeeceEEEcCCcEEEEEcCCCChHHHHHHHHhcCcCCCccEEEEcCe-------------EEE
Q psy1503 90 SLDNVTAQWSLQNADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSLGGT-------------VSY 156 (265)
Q Consensus 90 ~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g~-------------i~~ 156 (265)
+++|++++|++. ..++++++||++++|++++|+||||||||||+++|+|+++|++|+|.++|. ++|
T Consensus 1 ~~~~l~~~~~~~-~~~il~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 79 (211)
T cd03225 1 ELKNLSFSYPDG-ARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVDGKDLTKLSLKELRRKVGL 79 (211)
T ss_pred CceeEEEecCCC-CeeeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEcccCCHHHHHhhceE
Confidence 367999999642 246899999999999999999999999999999999999999999999873 899
Q ss_pred EecCCC--CccccHHHHHhcCCc---cc----HHHHHHHHHHhcchhHHhcCCCCCccccCCCCCCCCHHHHHHHHHHHH
Q psy1503 157 ASQEPW--IFAATIRQNILFGLP---YL----RRRYADVIRVCALQDDFDSLPNGDFTVVGERGASLSGGQKARINLARA 227 (265)
Q Consensus 157 v~Q~~~--l~~~ti~eni~~~~~---~~----~~~~~~~~~~~~l~~~i~~l~~g~~t~vg~~g~~LSgGqrqRialARa 227 (265)
++|++. +++.|++||+.++.. .. .++..+.++..++.+.+ ......||||||||++||||
T Consensus 80 ~~q~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LSgG~~qrv~lara 148 (211)
T cd03225 80 VFQNPDDQFFGPTVEEEVAFGLENLGLPEEEIEERVEEALELVGLEGLR-----------DRSPFTLSGGQKQRVAIAGV 148 (211)
T ss_pred EecChhhhcCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCcHhhh-----------cCCcccCCHHHHHHHHHHHH
Confidence 999984 557899999987421 11 12233444444444333 34457899999999999999
Q ss_pred HccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHH
Q psy1503 228 VYKNADIYLLDDPLSAVDMHVGKHLFEDCISGC 260 (265)
Q Consensus 228 l~~~~~illLDEp~s~LD~~~~~~i~~~~i~~~ 260 (265)
|+.+|+++||||||++||+.+...+++ .+..+
T Consensus 149 l~~~p~llllDEPt~~LD~~~~~~~~~-~l~~~ 180 (211)
T cd03225 149 LAMDPDILLLDEPTAGLDPAGRRELLE-LLKKL 180 (211)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHH-HHHHH
Confidence 999999999999999999999998866 44443
No 100
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=100.00 E-value=2.4e-38 Score=271.85 Aligned_cols=157 Identities=26% Similarity=0.424 Sum_probs=131.8
Q ss_pred EEEEeEEEEeCCCCCCcceeeceEEEcCCcEEEEEcCCCChHHHHHHHHhcCcCCCccEEEEcCe-----------EEEE
Q psy1503 89 VSLDNVTAQWSLQNADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSLGGT-----------VSYA 157 (265)
Q Consensus 89 i~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g~-----------i~~v 157 (265)
|+++|++++|++ .++++++||++++|++++|+||||||||||+++|+|+++|++|+|.++|. ++|+
T Consensus 1 l~~~~l~~~~~~---~~~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i~~~ 77 (208)
T cd03268 1 LKTNDLTKTYGK---KRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSYQKNIEALRRIGAL 77 (208)
T ss_pred CEEEEEEEEECC---eEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCCcccchHHHHhhEEEe
Confidence 468999999953 46999999999999999999999999999999999999999999999873 8999
Q ss_pred ecCCCCcc-ccHHHHHhcCCc---ccHHHHHHHHHHhcchhHHhcCCCCCccccCCCCCCCCHHHHHHHHHHHHHccCCC
Q psy1503 158 SQEPWIFA-ATIRQNILFGLP---YLRRRYADVIRVCALQDDFDSLPNGDFTVVGERGASLSGGQKARINLARAVYKNAD 233 (265)
Q Consensus 158 ~Q~~~l~~-~ti~eni~~~~~---~~~~~~~~~~~~~~l~~~i~~l~~g~~t~vg~~g~~LSgGqrqRialARal~~~~~ 233 (265)
+|++.+++ .|++||+.++.. ...++..++++..++.+.+. .....||||||||++||||++.+|+
T Consensus 78 ~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~qrv~la~al~~~p~ 146 (208)
T cd03268 78 IEAPGFYPNLTARENLRLLARLLGIRKKRIDEVLDVVGLKDSAK-----------KKVKGFSLGMKQRLGIALALLGNPD 146 (208)
T ss_pred cCCCccCccCcHHHHHHHHHHhcCCcHHHHHHHHHHcCCHHHHh-----------hhHhhCCHHHHHHHHHHHHHhcCCC
Confidence 99998885 699999986531 22344555666666654433 3456899999999999999999999
Q ss_pred EEEEeCCCCCcCHHHHHHHHHHHHHHH
Q psy1503 234 IYLLDDPLSAVDMHVGKHLFEDCISGC 260 (265)
Q Consensus 234 illLDEp~s~LD~~~~~~i~~~~i~~~ 260 (265)
++||||||++||+.+.+.+++ .+..+
T Consensus 147 llllDEPt~~LD~~~~~~l~~-~l~~~ 172 (208)
T cd03268 147 LLILDEPTNGLDPDGIKELRE-LILSL 172 (208)
T ss_pred EEEECCCcccCCHHHHHHHHH-HHHHH
Confidence 999999999999999988865 44443
No 101
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=100.00 E-value=5.8e-38 Score=269.38 Aligned_cols=150 Identities=27% Similarity=0.434 Sum_probs=127.7
Q ss_pred CcEEEEeEEEEeCCCCCCcceeeceEEEcCCcEEEEEcCCCChHHHHHHHHhcCcCCCccEEEEcCe-------------
Q psy1503 87 GHVSLDNVTAQWSLQNADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSLGGT------------- 153 (265)
Q Consensus 87 ~~i~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g~------------- 153 (265)
+.++++|++++|+.. ..++++|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.
T Consensus 5 ~~l~~~~l~~~~~~~-~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~ 83 (207)
T cd03369 5 GEIEVENLSVRYAPD-LPPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEEGKIEIDGIDISTIPLEDLRSS 83 (207)
T ss_pred CeEEEEEEEEEeCCC-CcccccCceEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEhHHCCHHHHHhh
Confidence 469999999999642 246899999999999999999999999999999999999999999999872
Q ss_pred EEEEecCCCCccccHHHHHhcCCcccHHHHHHHHHHhcchhHHhcCCCCCccccCCCCCCCCHHHHHHHHHHHHHccCCC
Q psy1503 154 VSYASQEPWIFAATIRQNILFGLPYLRRRYADVIRVCALQDDFDSLPNGDFTVVGERGASLSGGQKARINLARAVYKNAD 233 (265)
Q Consensus 154 i~~v~Q~~~l~~~ti~eni~~~~~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~vg~~g~~LSgGqrqRialARal~~~~~ 233 (265)
++|++|++.+|+.|++||+.+......+++.+ .+. +......|||||+||++||||++.+|+
T Consensus 84 i~~v~q~~~~~~~tv~~~l~~~~~~~~~~~~~---~l~---------------~~~~~~~LS~G~~qrv~laral~~~p~ 145 (207)
T cd03369 84 LTIIPQDPTLFSGTIRSNLDPFDEYSDEEIYG---ALR---------------VSEGGLNLSQGQRQLLCLARALLKRPR 145 (207)
T ss_pred EEEEecCCcccCccHHHHhcccCCCCHHHHHH---Hhh---------------ccCCCCcCCHHHHHHHHHHHHHhhCCC
Confidence 99999999999999999997654332222222 111 234677999999999999999999999
Q ss_pred EEEEeCCCCCcCHHHHHHHHHH
Q psy1503 234 IYLLDDPLSAVDMHVGKHLFED 255 (265)
Q Consensus 234 illLDEp~s~LD~~~~~~i~~~ 255 (265)
++||||||++||+.+...+.+.
T Consensus 146 llllDEP~~~LD~~~~~~l~~~ 167 (207)
T cd03369 146 VLVLDEATASIDYATDALIQKT 167 (207)
T ss_pred EEEEeCCcccCCHHHHHHHHHH
Confidence 9999999999999999887553
No 102
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.1e-38 Score=294.75 Aligned_cols=159 Identities=27% Similarity=0.447 Sum_probs=133.2
Q ss_pred cEEEEeEEEEeCCCCCCcceeeceEEEcCCcEEEEEcCCCChHHHHHHHHhcCcCCCccEEEEcCe-----------EEE
Q psy1503 88 HVSLDNVTAQWSLQNADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSLGGT-----------VSY 156 (265)
Q Consensus 88 ~i~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g~-----------i~~ 156 (265)
.++++|++++|+. ..+|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|. ++|
T Consensus 3 ~l~i~~l~~~~~~---~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~p~~G~I~~~g~~i~~~~~~~~~i~~ 79 (369)
T PRK11000 3 SVTLRNVTKAYGD---VVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFIGEKRMNDVPPAERGVGM 79 (369)
T ss_pred EEEEEEEEEEeCC---eEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHhHCCEEE
Confidence 4899999999963 45899999999999999999999999999999999999999999999873 899
Q ss_pred EecCCCCcc-ccHHHHHhcCCc---cc----HHHHHHHHHHhcchhHHhcCCCCCccccCCCCCCCCHHHHHHHHHHHHH
Q psy1503 157 ASQEPWIFA-ATIRQNILFGLP---YL----RRRYADVIRVCALQDDFDSLPNGDFTVVGERGASLSGGQKARINLARAV 228 (265)
Q Consensus 157 v~Q~~~l~~-~ti~eni~~~~~---~~----~~~~~~~~~~~~l~~~i~~l~~g~~t~vg~~g~~LSgGqrqRialARal 228 (265)
++|++.+|+ .|++||+.|+.. .. .+++.++++.+++.+..+ ....+|||||||||+|||||
T Consensus 80 v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~-----------~~~~~LSgGq~QRvaLAraL 148 (369)
T PRK11000 80 VFQSYALYPHLSVAENMSFGLKLAGAKKEEINQRVNQVAEVLQLAHLLD-----------RKPKALSGGQRQRVAIGRTL 148 (369)
T ss_pred EeCCcccCCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhhhc-----------CChhhCCHHHHHHHHHHHHH
Confidence 999999996 599999998642 11 123445555555544333 34468999999999999999
Q ss_pred ccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHHh
Q psy1503 229 YKNADIYLLDDPLSAVDMHVGKHLFEDCISGCL 261 (265)
Q Consensus 229 ~~~~~illLDEp~s~LD~~~~~~i~~~~i~~~l 261 (265)
+.+|+++|||||||+||+.+++.+.+ .+..+.
T Consensus 149 ~~~P~lLLLDEPts~LD~~~~~~l~~-~L~~l~ 180 (369)
T PRK11000 149 VAEPSVFLLDEPLSNLDAALRVQMRI-EISRLH 180 (369)
T ss_pred hcCCCEEEEeCCcccCCHHHHHHHHH-HHHHHH
Confidence 99999999999999999999988865 344443
No 103
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=100.00 E-value=2.6e-38 Score=263.30 Aligned_cols=130 Identities=25% Similarity=0.466 Sum_probs=119.5
Q ss_pred EEEEeEEEEeCCCCCCcceeeceEEEcCCcEEEEEcCCCChHHHHHHHHhcCcCCCccEEEEcC--eEEEEecCCCCccc
Q psy1503 89 VSLDNVTAQWSLQNADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSLGG--TVSYASQEPWIFAA 166 (265)
Q Consensus 89 i~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g--~i~~v~Q~~~l~~~ 166 (265)
|+++|++++|+. .+++++++||++++|++++|+||||||||||+++|+|+++|++|+|.++| .++|++|++.+++.
T Consensus 1 i~~~~~~~~~~~--~~~~l~~i~l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~i~~~~q~~~~~~~ 78 (166)
T cd03223 1 IELENLSLATPD--GRVLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEGEDLLFLPQRPYLPLG 78 (166)
T ss_pred CEEEEEEEEcCC--CCeeeecCeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCCceEEEECCCCccccc
Confidence 468999999953 24689999999999999999999999999999999999999999999987 69999999998888
Q ss_pred cHHHHHhcCCcccHHHHHHHHHHhcchhHHhcCCCCCccccCCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCcCH
Q psy1503 167 TIRQNILFGLPYLRRRYADVIRVCALQDDFDSLPNGDFTVVGERGASLSGGQKARINLARAVYKNADIYLLDDPLSAVDM 246 (265)
Q Consensus 167 ti~eni~~~~~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~vg~~g~~LSgGqrqRialARal~~~~~illLDEp~s~LD~ 246 (265)
|++||+.++ ....||||||||++||||++++|+++||||||++||+
T Consensus 79 tv~~nl~~~----------------------------------~~~~LS~G~~~rv~laral~~~p~~lllDEPt~~LD~ 124 (166)
T cd03223 79 TLREQLIYP----------------------------------WDDVLSGGEQQRLAFARLLLHKPKFVFLDEATSALDE 124 (166)
T ss_pred cHHHHhhcc----------------------------------CCCCCCHHHHHHHHHHHHHHcCCCEEEEECCccccCH
Confidence 999999763 2358999999999999999999999999999999999
Q ss_pred HHHHHHHH
Q psy1503 247 HVGKHLFE 254 (265)
Q Consensus 247 ~~~~~i~~ 254 (265)
.+.+.+.+
T Consensus 125 ~~~~~l~~ 132 (166)
T cd03223 125 ESEDRLYQ 132 (166)
T ss_pred HHHHHHHH
Confidence 99988865
No 104
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.5e-38 Score=278.11 Aligned_cols=155 Identities=29% Similarity=0.506 Sum_probs=137.4
Q ss_pred cEEEEeEEEEeCCCCCCcceeeceEEEcCCcEEEEEcCCCChHHHHHHHHhcCcCCCccEEEEcCe--------------
Q psy1503 88 HVSLDNVTAQWSLQNADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSLGGT-------------- 153 (265)
Q Consensus 88 ~i~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g~-------------- 153 (265)
.+++++++|+|+.. .++|+|+||+|++|+.++|+|+||||||||++++.|+++|++|+|.++|.
T Consensus 3 ~i~~~~l~~~y~~~--~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p~~G~v~~~g~~~~~~~~~~~~~~~ 80 (235)
T COG1122 3 MIEAENLSFRYPGR--KAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEVLVDGLDTSSEKSLLELRQK 80 (235)
T ss_pred eEEEEEEEEEcCCC--ceeeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcCcCCCCEEEECCeeccchhhHHHhhcc
Confidence 58899999999753 57999999999999999999999999999999999999999999999873
Q ss_pred EEEEecCC--CCccccHHHHHhcCCcc---c----HHHHHHHHHHhcchhHHhcCCCCCccccCCCCCCCCHHHHHHHHH
Q psy1503 154 VSYASQEP--WIFAATIRQNILFGLPY---L----RRRYADVIRVCALQDDFDSLPNGDFTVVGERGASLSGGQKARINL 224 (265)
Q Consensus 154 i~~v~Q~~--~l~~~ti~eni~~~~~~---~----~~~~~~~~~~~~l~~~i~~l~~g~~t~vg~~g~~LSgGqrqRial 224 (265)
+|||+|+| .+|..||.|.+.||... . +++..++++.+++.+..+..| .+||||||||+||
T Consensus 81 vG~VfQnpd~q~~~~tV~~evafg~~n~g~~~~e~~~rv~~~l~~vgl~~~~~r~p-----------~~LSGGqkqRvaI 149 (235)
T COG1122 81 VGLVFQNPDDQLFGPTVEDEVAFGLENLGLPREEIEERVAEALELVGLEELLDRPP-----------FNLSGGQKQRVAI 149 (235)
T ss_pred eEEEEECcccccccCcHHHHHhhchhhcCCCHHHHHHHHHHHHHHcCchhhccCCc-----------cccCCcceeeHHh
Confidence 99999999 68899999999998632 2 345667788888877655444 6899999999999
Q ss_pred HHHHccCCCEEEEeCCCCCcCHHHHHHHHHH
Q psy1503 225 ARAVYKNADIYLLDDPLSAVDMHVGKHLFED 255 (265)
Q Consensus 225 ARal~~~~~illLDEp~s~LD~~~~~~i~~~ 255 (265)
|.+|+.+|+++|||||||+||+...+.+++.
T Consensus 150 A~vLa~~P~iliLDEPta~LD~~~~~~l~~~ 180 (235)
T COG1122 150 AGVLAMGPEILLLDEPTAGLDPKGRRELLEL 180 (235)
T ss_pred hHHHHcCCCEEEEcCCCCCCCHHHHHHHHHH
Confidence 9999999999999999999999999998663
No 105
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=100.00 E-value=3.3e-38 Score=276.93 Aligned_cols=160 Identities=27% Similarity=0.452 Sum_probs=130.2
Q ss_pred cEEEEeEEEEeCCCCCCcceeeceEEEcCCcEEEEEcCCCChHHHHHHHHhcCcCCCccEEEEcCe--------------
Q psy1503 88 HVSLDNVTAQWSLQNADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSLGGT-------------- 153 (265)
Q Consensus 88 ~i~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g~-------------- 153 (265)
+++++|++++|+. ..++++|+||++++|++++|+||||||||||+++|+|+++|++|+|.++|.
T Consensus 1 ~l~~~~l~~~~~~--~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~ 78 (243)
T TIGR02315 1 MLEVENLSKVYPN--GKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSILLEGTDITKLRGKKLRKLR 78 (243)
T ss_pred CeEEEeeeeecCC--CcceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCccEEEECCEEhhhCCHHHHHHHH
Confidence 3789999999962 246999999999999999999999999999999999999999999999872
Q ss_pred --EEEEecCCCCcc-ccHHHHHhcCCcc---------------cHHHHHHHHHHhcchhHHhcCCCCCccccCCCCCCCC
Q psy1503 154 --VSYASQEPWIFA-ATIRQNILFGLPY---------------LRRRYADVIRVCALQDDFDSLPNGDFTVVGERGASLS 215 (265)
Q Consensus 154 --i~~v~Q~~~l~~-~ti~eni~~~~~~---------------~~~~~~~~~~~~~l~~~i~~l~~g~~t~vg~~g~~LS 215 (265)
++|++|++.+|+ .|++||+.++... ..+++.++++.+++... ......+||
T Consensus 79 ~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LS 147 (243)
T TIGR02315 79 RRIGMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERVGLADK-----------AYQRADQLS 147 (243)
T ss_pred hheEEEcCCCcccccccHHHHHhhcccccccchhhhhccccHHHHHHHHHHHHHcCcHhh-----------hcCCcccCC
Confidence 899999999886 5999999875311 01223333444444322 334567999
Q ss_pred HHHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHHh
Q psy1503 216 GGQKARINLARAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGCL 261 (265)
Q Consensus 216 gGqrqRialARal~~~~~illLDEp~s~LD~~~~~~i~~~~i~~~l 261 (265)
||||||++|||||+.+|+++||||||++||+.+...+.+ .+..+.
T Consensus 148 gG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~-~l~~~~ 192 (243)
T TIGR02315 148 GGQQQRVAIARALAQQPDLILADEPIASLDPKTSKQVMD-YLKRIN 192 (243)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHH-HHHHHH
Confidence 999999999999999999999999999999999988754 444443
No 106
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=100.00 E-value=1.9e-38 Score=294.10 Aligned_cols=160 Identities=29% Similarity=0.510 Sum_probs=134.4
Q ss_pred CcEEEEeEEEEeCCCCCCcceeeceEEEcCCcEEEEEcCCCChHHHHHHHHhcCcCCCc--cEEEEcCe-----------
Q psy1503 87 GHVSLDNVTAQWSLQNADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISS--GKVSLGGT----------- 153 (265)
Q Consensus 87 ~~i~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~--G~i~~~g~----------- 153 (265)
+.++++|++++|+. ..+|+|+||+|++|++++|+||||||||||+++|+|+++|++ |+|.++|.
T Consensus 4 ~~l~~~~l~~~~~~---~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~~~G~i~~~g~~~~~~~~~~r~ 80 (362)
T TIGR03258 4 GGIRIDHLRVAYGA---NTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIADRDLTHAPPHKRG 80 (362)
T ss_pred eEEEEEEEEEEECC---eEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCEEEEECCEECCCCCHHHCC
Confidence 46899999999963 468999999999999999999999999999999999999999 99999883
Q ss_pred EEEEecCCCCcc-ccHHHHHhcCCcc---c----HHHHHHHHHHhcchhHHhcCCCCCccccCCCCCCCCHHHHHHHHHH
Q psy1503 154 VSYASQEPWIFA-ATIRQNILFGLPY---L----RRRYADVIRVCALQDDFDSLPNGDFTVVGERGASLSGGQKARINLA 225 (265)
Q Consensus 154 i~~v~Q~~~l~~-~ti~eni~~~~~~---~----~~~~~~~~~~~~l~~~i~~l~~g~~t~vg~~g~~LSgGqrqRialA 225 (265)
++|++|++.+|+ .|++|||.|+... . ..++.++++..++.+..+ ....+|||||||||+||
T Consensus 81 ig~vfQ~~~l~p~~tv~enl~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~-----------~~~~~LSgGq~QRvaLA 149 (362)
T TIGR03258 81 LALLFQNYALFPHLKVEDNVAFGLRAQKMPKADIAERVADALKLVGLGDAAA-----------HLPAQLSGGMQQRIAIA 149 (362)
T ss_pred EEEEECCcccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCchhh-----------CChhhCCHHHHHHHHHH
Confidence 899999999996 4999999986421 1 223445555555554443 34468999999999999
Q ss_pred HHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHHh
Q psy1503 226 RAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGCL 261 (265)
Q Consensus 226 Ral~~~~~illLDEp~s~LD~~~~~~i~~~~i~~~l 261 (265)
|||+.+|+++|||||||+||+.+..++.+ .+..+.
T Consensus 150 RAL~~~P~llLLDEP~s~LD~~~r~~l~~-~l~~l~ 184 (362)
T TIGR03258 150 RAIAIEPDVLLLDEPLSALDANIRANMRE-EIAALH 184 (362)
T ss_pred HHHhcCCCEEEEcCccccCCHHHHHHHHH-HHHHHH
Confidence 99999999999999999999999998865 344443
No 107
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=100.00 E-value=3.4e-38 Score=291.70 Aligned_cols=160 Identities=31% Similarity=0.483 Sum_probs=133.2
Q ss_pred cEEEEeEEEEeCCCCCCcceeeceEEEcCCcEEEEEcCCCChHHHHHHHHhcCcCCCccEEEEcCe-----------EEE
Q psy1503 88 HVSLDNVTAQWSLQNADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSLGGT-----------VSY 156 (265)
Q Consensus 88 ~i~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g~-----------i~~ 156 (265)
.|+++|++++|+. ..+|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|. ++|
T Consensus 2 ~L~i~~l~~~~~~---~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~~~r~i~~ 78 (353)
T PRK10851 2 SIEIANIKKSFGR---TQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVSRLHARDRKVGF 78 (353)
T ss_pred EEEEEEEEEEeCC---eEEEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHCCEEE
Confidence 4789999999963 46899999999999999999999999999999999999999999999883 999
Q ss_pred EecCCCCcc-ccHHHHHhcCCcc-------c----HHHHHHHHHHhcchhHHhcCCCCCccccCCCCCCCCHHHHHHHHH
Q psy1503 157 ASQEPWIFA-ATIRQNILFGLPY-------L----RRRYADVIRVCALQDDFDSLPNGDFTVVGERGASLSGGQKARINL 224 (265)
Q Consensus 157 v~Q~~~l~~-~ti~eni~~~~~~-------~----~~~~~~~~~~~~l~~~i~~l~~g~~t~vg~~g~~LSgGqrqRial 224 (265)
++|++.+|+ .|+.||+.|+... . .++..++++..++.+.. .....+||||||||++|
T Consensus 79 v~Q~~~l~p~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~-----------~~~~~~LSgGq~QRval 147 (353)
T PRK10851 79 VFQHYALFRHMTVFDNIAFGLTVLPRRERPNAAAIKAKVTQLLEMVQLAHLA-----------DRYPAQLSGGQKQRVAL 147 (353)
T ss_pred EecCcccCCCCcHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHHcCCchhh-----------hCChhhCCHHHHHHHHH
Confidence 999999997 5999999986421 1 12334445555554333 34457999999999999
Q ss_pred HHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHHhh
Q psy1503 225 ARAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGCLT 262 (265)
Q Consensus 225 ARal~~~~~illLDEp~s~LD~~~~~~i~~~~i~~~l~ 262 (265)
||||+.+|+++||||||++||+.++..+.+ .+..+.+
T Consensus 148 ArAL~~~P~llLLDEP~s~LD~~~r~~l~~-~L~~l~~ 184 (353)
T PRK10851 148 ARALAVEPQILLLDEPFGALDAQVRKELRR-WLRQLHE 184 (353)
T ss_pred HHHHhcCCCEEEEeCCCccCCHHHHHHHHH-HHHHHHH
Confidence 999999999999999999999999988865 4445443
No 108
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.5e-38 Score=282.31 Aligned_cols=159 Identities=23% Similarity=0.382 Sum_probs=133.2
Q ss_pred cEEEEeEEEEeCCCCCCcceeeceEEEcCCcEEEEEcCCCChHHHHHHHHhcCcCCCccEEEEcCe-------------E
Q psy1503 88 HVSLDNVTAQWSLQNADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSLGGT-------------V 154 (265)
Q Consensus 88 ~i~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g~-------------i 154 (265)
.++++|++++|+. ..++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|. +
T Consensus 4 ~l~~~~l~~~~~~--~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i 81 (274)
T PRK13647 4 IIEVEDLHFRYKD--GTKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVKVMGREVNAENEKWVRSKV 81 (274)
T ss_pred eEEEEEEEEEeCC--CCeeeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHhhE
Confidence 6899999999963 245999999999999999999999999999999999999999999999882 8
Q ss_pred EEEecCC--CCccccHHHHHhcCCc---cc----HHHHHHHHHHhcchhHHhcCCCCCccccCCCCCCCCHHHHHHHHHH
Q psy1503 155 SYASQEP--WIFAATIRQNILFGLP---YL----RRRYADVIRVCALQDDFDSLPNGDFTVVGERGASLSGGQKARINLA 225 (265)
Q Consensus 155 ~~v~Q~~--~l~~~ti~eni~~~~~---~~----~~~~~~~~~~~~l~~~i~~l~~g~~t~vg~~g~~LSgGqrqRialA 225 (265)
+|++|+| .++..|+.||+.++.. .. .+++.++++.+++.+..... ...||||||||++||
T Consensus 82 ~~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~-----------~~~LSgG~~qrv~la 150 (274)
T PRK13647 82 GLVFQDPDDQVFSSTVWDDVAFGPVNMGLDKDEVERRVEEALKAVRMWDFRDKP-----------PYHLSYGQKKRVAIA 150 (274)
T ss_pred EEEecChhhhhccCcHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcCC-----------hhhCCHHHHHHHHHH
Confidence 9999998 5677899999998632 11 23445556666665544433 358999999999999
Q ss_pred HHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHH
Q psy1503 226 RAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGC 260 (265)
Q Consensus 226 Ral~~~~~illLDEp~s~LD~~~~~~i~~~~i~~~ 260 (265)
|||+.+|+++||||||++||+.+...+++ .+..+
T Consensus 151 raL~~~p~llllDEPt~~LD~~~~~~l~~-~l~~~ 184 (274)
T PRK13647 151 GVLAMDPDVIVLDEPMAYLDPRGQETLME-ILDRL 184 (274)
T ss_pred HHHHcCCCEEEEECCCcCCCHHHHHHHHH-HHHHH
Confidence 99999999999999999999999998855 44443
No 109
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3e-38 Score=291.26 Aligned_cols=161 Identities=28% Similarity=0.414 Sum_probs=131.2
Q ss_pred cEEEEeEEEEeCCCC-CCcceeeceEEEcCCcEEEEEcCCCChHHHHHHHHhcCcCCCccEEEEcCe-------------
Q psy1503 88 HVSLDNVTAQWSLQN-ADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSLGGT------------- 153 (265)
Q Consensus 88 ~i~~~~~~~~~~~~~-~~~~l~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g~------------- 153 (265)
+|+++|++++|+... ..++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.
T Consensus 1 mi~i~~l~~~y~~~~~~~~il~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~ 80 (343)
T PRK11153 1 MIELKNISKVFPQGGRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGRVLVDGQDLTALSEKELRKA 80 (343)
T ss_pred CEEEEeEEEEeCCCCCceEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHH
Confidence 378999999996211 346999999999999999999999999999999999999999999999872
Q ss_pred ---EEEEecCCCCcc-ccHHHHHhcCCc---ccH----HHHHHHHHHhcchhHHhcCCCCCccccCCCCCCCCHHHHHHH
Q psy1503 154 ---VSYASQEPWIFA-ATIRQNILFGLP---YLR----RRYADVIRVCALQDDFDSLPNGDFTVVGERGASLSGGQKARI 222 (265)
Q Consensus 154 ---i~~v~Q~~~l~~-~ti~eni~~~~~---~~~----~~~~~~~~~~~l~~~i~~l~~g~~t~vg~~g~~LSgGqrqRi 222 (265)
++|++|++.+|+ .|++||+.++.. ... ++..+.++..++.+. ......+||||||||+
T Consensus 81 ~~~ig~v~q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~-----------~~~~~~~LSgGq~qRv 149 (343)
T PRK11153 81 RRQIGMIFQHFNLLSSRTVFDNVALPLELAGTPKAEIKARVTELLELVGLSDK-----------ADRYPAQLSGGQKQRV 149 (343)
T ss_pred hcCEEEEeCCCccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchh-----------hhCChhhCCHHHHHHH
Confidence 899999999986 699999987532 111 223334444444332 3345578999999999
Q ss_pred HHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHH
Q psy1503 223 NLARAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGC 260 (265)
Q Consensus 223 alARal~~~~~illLDEp~s~LD~~~~~~i~~~~i~~~ 260 (265)
+|||||+++|+++||||||++||+.+...+++ .+..+
T Consensus 150 ~lAraL~~~p~iLlLDEPts~LD~~~~~~l~~-~L~~l 186 (343)
T PRK11153 150 AIARALASNPKVLLCDEATSALDPATTRSILE-LLKDI 186 (343)
T ss_pred HHHHHHHcCCCEEEEeCCcccCCHHHHHHHHH-HHHHH
Confidence 99999999999999999999999999988865 44444
No 110
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.5e-38 Score=284.11 Aligned_cols=164 Identities=26% Similarity=0.407 Sum_probs=132.7
Q ss_pred cEEEEeEEEEeCCCC--CCcceeeceEEEcCCcEEEEEcCCCChHHHHHHHHhcCcCCCccEEEEcCe------------
Q psy1503 88 HVSLDNVTAQWSLQN--ADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSLGGT------------ 153 (265)
Q Consensus 88 ~i~~~~~~~~~~~~~--~~~~l~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g~------------ 153 (265)
.|+++|++++|+... ..++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 81 (287)
T PRK13637 2 SIKIENLTHIYMEGTPFEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITDKKVKLSDI 81 (287)
T ss_pred EEEEEEEEEECCCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEECCEECCCcCccHHHH
Confidence 378999999996421 146999999999999999999999999999999999999999999999872
Q ss_pred ---EEEEecCC--CCccccHHHHHhcCCc---ccH----HHHHHHHHHhcchhHHhcCCCCCccccCCCCCCCCHHHHHH
Q psy1503 154 ---VSYASQEP--WIFAATIRQNILFGLP---YLR----RRYADVIRVCALQDDFDSLPNGDFTVVGERGASLSGGQKAR 221 (265)
Q Consensus 154 ---i~~v~Q~~--~l~~~ti~eni~~~~~---~~~----~~~~~~~~~~~l~~~i~~l~~g~~t~vg~~g~~LSgGqrqR 221 (265)
++|++|+| .+|+.|++||+.++.. ... +++.++++.+++. +.+.......+||||||||
T Consensus 82 ~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~---------~~~~~~~~~~~LSgGq~qr 152 (287)
T PRK13637 82 RKKVGLVFQYPEYQLFEETIEKDIAFGPINLGLSEEEIENRVKRAMNIVGLD---------YEDYKDKSPFELSGGQKRR 152 (287)
T ss_pred hhceEEEecCchhccccccHHHHHHhHHHHCCCCHHHHHHHHHHHHHHcCCC---------chhhccCCcccCCHHHHHH
Confidence 79999998 5678899999987532 111 2334445555543 0122345567999999999
Q ss_pred HHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHHh
Q psy1503 222 INLARAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGCL 261 (265)
Q Consensus 222 ialARal~~~~~illLDEp~s~LD~~~~~~i~~~~i~~~l 261 (265)
++|||||+.+|+++||||||++||+.+...+++ ++..+.
T Consensus 153 v~iAraL~~~P~llllDEPt~gLD~~~~~~l~~-~l~~l~ 191 (287)
T PRK13637 153 VAIAGVVAMEPKILILDEPTAGLDPKGRDEILN-KIKELH 191 (287)
T ss_pred HHHHHHHHcCCCEEEEECCccCCCHHHHHHHHH-HHHHHH
Confidence 999999999999999999999999999998865 454443
No 111
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.9e-38 Score=273.70 Aligned_cols=158 Identities=21% Similarity=0.375 Sum_probs=130.3
Q ss_pred EEEEeEEEEeCCCCCCcceeeceEEEcCCcEEEEEcCCCChHHHHHHHHhcCcCCCccEEEEcC------------eEEE
Q psy1503 89 VSLDNVTAQWSLQNADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSLGG------------TVSY 156 (265)
Q Consensus 89 i~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g------------~i~~ 156 (265)
|+++|++++|+. .++++|+||++++|++++|+||||||||||+++|+|+++|++|+|.++| .++|
T Consensus 1 i~~~~~~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~ 77 (220)
T cd03265 1 IEVENLVKKYGD---FEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVVREPREVRRRIGI 77 (220)
T ss_pred CEEEEEEEEECC---EEeeeceeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecCcChHHHhhcEEE
Confidence 478999999963 4689999999999999999999999999999999999999999999987 2899
Q ss_pred EecCCCCcc-ccHHHHHhcCCc---cc----HHHHHHHHHHhcchhHHhcCCCCCccccCCCCCCCCHHHHHHHHHHHHH
Q psy1503 157 ASQEPWIFA-ATIRQNILFGLP---YL----RRRYADVIRVCALQDDFDSLPNGDFTVVGERGASLSGGQKARINLARAV 228 (265)
Q Consensus 157 v~Q~~~l~~-~ti~eni~~~~~---~~----~~~~~~~~~~~~l~~~i~~l~~g~~t~vg~~g~~LSgGqrqRialARal 228 (265)
++|++.+++ .|++||+.++.. .. .++..++++.+++.+..+ ....+||||||||++||||+
T Consensus 78 ~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~qr~~la~al 146 (220)
T cd03265 78 VFQDLSVDDELTGWENLYIHARLYGVPGAERRERIDELLDFVGLLEAAD-----------RLVKTYSGGMRRRLEIARSL 146 (220)
T ss_pred ecCCccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhh-----------CChhhCCHHHHHHHHHHHHH
Confidence 999998887 499999976421 11 223445556666544333 33468999999999999999
Q ss_pred ccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHHh
Q psy1503 229 YKNADIYLLDDPLSAVDMHVGKHLFEDCISGCL 261 (265)
Q Consensus 229 ~~~~~illLDEp~s~LD~~~~~~i~~~~i~~~l 261 (265)
+.+|+++||||||++||+.+.+.+++ .+..+.
T Consensus 147 ~~~p~llllDEPt~~LD~~~~~~l~~-~l~~~~ 178 (220)
T cd03265 147 VHRPEVLFLDEPTIGLDPQTRAHVWE-YIEKLK 178 (220)
T ss_pred hcCCCEEEEcCCccCCCHHHHHHHHH-HHHHHH
Confidence 99999999999999999999988765 444443
No 112
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=100.00 E-value=2.3e-38 Score=276.73 Aligned_cols=157 Identities=26% Similarity=0.433 Sum_probs=126.7
Q ss_pred EEEEeEEEEeCCCCCCcceeeceEEEcCCcEEEEEcCCCChHHHHHHHHhcCcCCCccEEEEcCe--------------E
Q psy1503 89 VSLDNVTAQWSLQNADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSLGGT--------------V 154 (265)
Q Consensus 89 i~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g~--------------i 154 (265)
++++|++++|+. .++|+++||+|++|++++|+||||||||||+++|+|+++|++|+|.++|. +
T Consensus 1 l~~~~l~~~~~~---~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i 77 (236)
T cd03219 1 LEVRGLTKRFGG---LVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLPPHEIARLGI 77 (236)
T ss_pred CeeeeeEEEECC---EEEecCceEEecCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEECCCCCHHHHHhcCE
Confidence 468999999963 46899999999999999999999999999999999999999999999872 8
Q ss_pred EEEecCCCCccc-cHHHHHhcCCccc-------------HHHHHHHHHHhcchhHHhcCCCCCccccCCCCCCCCHHHHH
Q psy1503 155 SYASQEPWIFAA-TIRQNILFGLPYL-------------RRRYADVIRVCALQDDFDSLPNGDFTVVGERGASLSGGQKA 220 (265)
Q Consensus 155 ~~v~Q~~~l~~~-ti~eni~~~~~~~-------------~~~~~~~~~~~~l~~~i~~l~~g~~t~vg~~g~~LSgGqrq 220 (265)
+|++|++.+|+. |++||+.++.... .....+ ...+.++.+ |+.........+|||||||
T Consensus 78 ~~v~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~LSgG~~q 150 (236)
T cd03219 78 GRTFQIPRLFPELTVLENVMVAAQARTGSGLLLARARREEREARE-----RAEELLERV--GLADLADRPAGELSYGQQR 150 (236)
T ss_pred EEEecccccccCCCHHHHHHHHHhhccccccccccccccHHHHHH-----HHHHHHHHc--CccchhhCChhhCCHHHHH
Confidence 999999999875 9999998753210 111010 111222222 2233345667899999999
Q ss_pred HHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHH
Q psy1503 221 RINLARAVYKNADIYLLDDPLSAVDMHVGKHLFED 255 (265)
Q Consensus 221 RialARal~~~~~illLDEp~s~LD~~~~~~i~~~ 255 (265)
|++|||||+.+|+++||||||++||+.+...+++.
T Consensus 151 rv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~ 185 (236)
T cd03219 151 RLEIARALATDPKLLLLDEPAAGLNPEETEELAEL 185 (236)
T ss_pred HHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHH
Confidence 99999999999999999999999999999988663
No 113
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=100.00 E-value=6.3e-38 Score=272.84 Aligned_cols=162 Identities=25% Similarity=0.330 Sum_probs=132.4
Q ss_pred CcEEEEeEEEEeCCCCC-CcceeeceEEEcCCcEEEEEcCCCChHHHHHHHHhcCcCCCccEEEEcC-------------
Q psy1503 87 GHVSLDNVTAQWSLQNA-DLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSLGG------------- 152 (265)
Q Consensus 87 ~~i~~~~~~~~~~~~~~-~~~l~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g------------- 152 (265)
..|+++|++++|+.... .++++|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|
T Consensus 5 ~~l~~~~l~~~~~~~~~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 84 (228)
T PRK10584 5 NIVEVHHLKKSVGQGEHELSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQMDEEARAK 84 (228)
T ss_pred ceEEEeeeEEEccCCCcceEEEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeeEEECCEEcccCCHHHHHH
Confidence 46899999999964211 2589999999999999999999999999999999999999999999876
Q ss_pred ----eEEEEecCCCCcc-ccHHHHHhcCCc---cc----HHHHHHHHHHhcchhHHhcCCCCCccccCCCCCCCCHHHHH
Q psy1503 153 ----TVSYASQEPWIFA-ATIRQNILFGLP---YL----RRRYADVIRVCALQDDFDSLPNGDFTVVGERGASLSGGQKA 220 (265)
Q Consensus 153 ----~i~~v~Q~~~l~~-~ti~eni~~~~~---~~----~~~~~~~~~~~~l~~~i~~l~~g~~t~vg~~g~~LSgGqrq 220 (265)
.++|++|++.+++ .|+.||+.++.. .. .+++.++++.+++.+.+.. ....|||||||
T Consensus 85 ~~~~~i~~~~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LS~Ge~q 153 (228)
T PRK10584 85 LRAKHVGFVFQSFMLIPTLNALENVELPALLRGESSRQSRNGAKALLEQLGLGKRLDH-----------LPAQLSGGEQQ 153 (228)
T ss_pred HHhheEEEEEcccccCCCcCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhC-----------ChhhCCHHHHH
Confidence 2899999999887 499999976421 11 2334455566665544333 34689999999
Q ss_pred HHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHH
Q psy1503 221 RINLARAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGC 260 (265)
Q Consensus 221 RialARal~~~~~illLDEp~s~LD~~~~~~i~~~~i~~~ 260 (265)
|++|||||+.+|+++||||||++||+.+...+++ .+..+
T Consensus 154 rl~la~al~~~p~llllDEPt~~LD~~~~~~l~~-~l~~~ 192 (228)
T PRK10584 154 RVALARAFNGRPDVLFADEPTGNLDRQTGDKIAD-LLFSL 192 (228)
T ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHH-HHHHH
Confidence 9999999999999999999999999999888755 44444
No 114
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4.6e-38 Score=287.39 Aligned_cols=165 Identities=24% Similarity=0.363 Sum_probs=132.7
Q ss_pred CCCcEEEEeEEEEeCCCC--CCcceeeceEEEcCCcEEEEEcCCCChHHHHHHHHhcCcCCCccEEEEcC----------
Q psy1503 85 GKGHVSLDNVTAQWSLQN--ADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSLGG---------- 152 (265)
Q Consensus 85 ~~~~i~~~~~~~~~~~~~--~~~~l~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g---------- 152 (265)
....|+++|++|+|+... ..++|+|+||+|++|++++|+|+||||||||+++|+|+++|++|+|.++|
T Consensus 18 ~~~~l~~~nl~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~p~~G~I~i~g~~~~~~~~~~ 97 (320)
T PRK13631 18 DDIILRVKNLYCVFDEKQENELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKYGTIQVGDIYIGDKKNNH 97 (320)
T ss_pred CCceEEEEeEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCEEcccccccc
Confidence 345799999999996421 23699999999999999999999999999999999999999999999875
Q ss_pred -------------------eEEEEecCC--CCccccHHHHHhcCCc---ccHH----HHHHHHHHhcchhHHhcCCCCCc
Q psy1503 153 -------------------TVSYASQEP--WIFAATIRQNILFGLP---YLRR----RYADVIRVCALQDDFDSLPNGDF 204 (265)
Q Consensus 153 -------------------~i~~v~Q~~--~l~~~ti~eni~~~~~---~~~~----~~~~~~~~~~l~~~i~~l~~g~~ 204 (265)
.++|++|+| ++|+.|++|||.++.. ...+ +..++++.+++. .
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~----------~ 167 (320)
T PRK13631 98 ELITNPYSKKIKNFKELRRRVSMVFQFPEYQLFKDTIEKDIMFGPVALGVKKSEAKKLAKFYLNKMGLD----------D 167 (320)
T ss_pred cccccccccccchHHHHHhcEEEEEECchhccccchHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCC----------h
Confidence 179999998 6888999999988632 1111 122222222221 1
Q ss_pred cccCCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHH
Q psy1503 205 TVVGERGASLSGGQKARINLARAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGC 260 (265)
Q Consensus 205 t~vg~~g~~LSgGqrqRialARal~~~~~illLDEp~s~LD~~~~~~i~~~~i~~~ 260 (265)
...++.+.+||||||||++|||||+.+|+++||||||++||+.+++.+++ .+..+
T Consensus 168 ~~~~~~~~~LSgGqkqRvaiAraL~~~p~iLLLDEPtsgLD~~~~~~l~~-~L~~l 222 (320)
T PRK13631 168 SYLERSPFGLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQ-LILDA 222 (320)
T ss_pred hHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHH-HHHHH
Confidence 23456778999999999999999999999999999999999999998865 44443
No 115
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=100.00 E-value=3.9e-38 Score=272.55 Aligned_cols=159 Identities=26% Similarity=0.443 Sum_probs=129.9
Q ss_pred EEEEeEEEEeCCCCCCcceeeceEEEcCCcEEEEEcCCCChHHHHHHHHhcCcCCCccEEEEcCe------------EEE
Q psy1503 89 VSLDNVTAQWSLQNADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSLGGT------------VSY 156 (265)
Q Consensus 89 i~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g~------------i~~ 156 (265)
|+++|+++.|+.. ..++|+|+||++++|++++|+||||||||||+++|+|+++|++|+|.++|. ++|
T Consensus 1 l~~~~l~~~~~~~-~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i~~ 79 (220)
T cd03263 1 LQIRNLTKTYKKG-TKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSIRTDRKAARQSLGY 79 (220)
T ss_pred CEEEeeEEEeCCC-CceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccchHHHhhhEEE
Confidence 4789999999632 256999999999999999999999999999999999999999999999873 899
Q ss_pred EecCCCCcc-ccHHHHHhcCCc---cc----HHHHHHHHHHhcchhHHhcCCCCCccccCCCCCCCCHHHHHHHHHHHHH
Q psy1503 157 ASQEPWIFA-ATIRQNILFGLP---YL----RRRYADVIRVCALQDDFDSLPNGDFTVVGERGASLSGGQKARINLARAV 228 (265)
Q Consensus 157 v~Q~~~l~~-~ti~eni~~~~~---~~----~~~~~~~~~~~~l~~~i~~l~~g~~t~vg~~g~~LSgGqrqRialARal 228 (265)
++|++.+++ .|++||+.+... .. .+++.++++.+++.+.. .....+||||||||++||||+
T Consensus 80 v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LS~G~~qrv~la~al 148 (220)
T cd03263 80 CPQFDALFDELTVREHLRFYARLKGLPKSEIKEEVELLLRVLGLTDKA-----------NKRARTLSGGMKRKLSLAIAL 148 (220)
T ss_pred ecCcCCccccCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHH-----------hChhhhCCHHHHHHHHHHHHH
Confidence 999999884 699999986421 11 12334455555554332 234568999999999999999
Q ss_pred ccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHH
Q psy1503 229 YKNADIYLLDDPLSAVDMHVGKHLFEDCISGC 260 (265)
Q Consensus 229 ~~~~~illLDEp~s~LD~~~~~~i~~~~i~~~ 260 (265)
+.+|+++||||||++||+.+.+.+.+ .+..+
T Consensus 149 ~~~p~llllDEP~~~LD~~~~~~l~~-~l~~~ 179 (220)
T cd03263 149 IGGPSVLLLDEPTSGLDPASRRAIWD-LILEV 179 (220)
T ss_pred hcCCCEEEECCCCCCCCHHHHHHHHH-HHHHH
Confidence 99999999999999999999988865 44443
No 116
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=3.6e-38 Score=271.14 Aligned_cols=157 Identities=23% Similarity=0.415 Sum_probs=128.7
Q ss_pred EEEEeEEEEeCCCCCCcceeeceEEEcCCcEEEEEcCCCChHHHHHHHHhcCcCCCccEEEEcC---------eEEEEec
Q psy1503 89 VSLDNVTAQWSLQNADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSLGG---------TVSYASQ 159 (265)
Q Consensus 89 i~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g---------~i~~v~Q 159 (265)
++++|+++.|++ +++++++||++++|++++|+||||||||||+++|+|+++|++|+|.++| .++|++|
T Consensus 1 l~~~~l~~~~~~---~~~l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~i~~~~q 77 (210)
T cd03269 1 LEVENVTKRFGR---VTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDGKPLDIAARNRIGYLPE 77 (210)
T ss_pred CEEEEEEEEECC---EEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCCchhHHHHccEEEecc
Confidence 468999999953 4689999999999999999999999999999999999999999999987 3899999
Q ss_pred CCCCcc-ccHHHHHhcCCc---cc----HHHHHHHHHHhcchhHHhcCCCCCccccCCCCCCCCHHHHHHHHHHHHHccC
Q psy1503 160 EPWIFA-ATIRQNILFGLP---YL----RRRYADVIRVCALQDDFDSLPNGDFTVVGERGASLSGGQKARINLARAVYKN 231 (265)
Q Consensus 160 ~~~l~~-~ti~eni~~~~~---~~----~~~~~~~~~~~~l~~~i~~l~~g~~t~vg~~g~~LSgGqrqRialARal~~~ 231 (265)
++.+++ .|++||+.+... .. .++..++++..++... ......+||||||||++||||++.+
T Consensus 78 ~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LS~G~~qrl~la~al~~~ 146 (210)
T cd03269 78 ERGLYPKMKVIDQLVYLAQLKGLKKEEARRRIDEWLERLELSEY-----------ANKRVEELSKGNQQKVQFIAAVIHD 146 (210)
T ss_pred CCcCCcCCcHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCChHH-----------HhCcHhhCCHHHHHHHHHHHHHhcC
Confidence 999887 499999976421 11 1223334444444332 3345678999999999999999999
Q ss_pred CCEEEEeCCCCCcCHHHHHHHHHHHHHHH
Q psy1503 232 ADIYLLDDPLSAVDMHVGKHLFEDCISGC 260 (265)
Q Consensus 232 ~~illLDEp~s~LD~~~~~~i~~~~i~~~ 260 (265)
|+++||||||++||+.+...+++ .+..+
T Consensus 147 p~~lllDEP~~~LD~~~~~~~~~-~l~~~ 174 (210)
T cd03269 147 PELLILDEPFSGLDPVNVELLKD-VIREL 174 (210)
T ss_pred CCEEEEeCCCcCCCHHHHHHHHH-HHHHH
Confidence 99999999999999999988866 34443
No 117
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=100.00 E-value=4.6e-38 Score=270.70 Aligned_cols=157 Identities=27% Similarity=0.407 Sum_probs=128.7
Q ss_pred EEEEeEEEEeCCCCCCcceeeceEEEcCCcEEEEEcCCCChHHHHHHHHhcCcCCCccEEEEcCe---------------
Q psy1503 89 VSLDNVTAQWSLQNADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSLGGT--------------- 153 (265)
Q Consensus 89 i~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g~--------------- 153 (265)
++++|++++|+. .++++++||++++|++++|+||||||||||+++|+|+++|++|+|.++|.
T Consensus 1 l~~~~l~~~~~~---~~~l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 77 (213)
T cd03262 1 IEIKNLHKSFGD---FHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTIIIDGLKLTDDKKNINELRQK 77 (213)
T ss_pred CEEEEEEEEECC---eEeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccchhHHHHHhc
Confidence 468999999963 46899999999999999999999999999999999999999999999873
Q ss_pred EEEEecCCCCcc-ccHHHHHhcCCc----ccH----HHHHHHHHHhcchhHHhcCCCCCccccCCCCCCCCHHHHHHHHH
Q psy1503 154 VSYASQEPWIFA-ATIRQNILFGLP----YLR----RRYADVIRVCALQDDFDSLPNGDFTVVGERGASLSGGQKARINL 224 (265)
Q Consensus 154 i~~v~Q~~~l~~-~ti~eni~~~~~----~~~----~~~~~~~~~~~l~~~i~~l~~g~~t~vg~~g~~LSgGqrqRial 224 (265)
++|++|++.+|+ .|++||+.++.. ... +++.++++.+++... ......+||||||||++|
T Consensus 78 i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LS~G~~qrv~l 146 (213)
T cd03262 78 VGMVFQQFNLFPHLTVLENITLAPIKVKGMSKAEAEERALELLEKVGLADK-----------ADAYPAQLSGGQQQRVAI 146 (213)
T ss_pred ceEEecccccCCCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCCHhH-----------hhhCccccCHHHHHHHHH
Confidence 799999999886 699999987521 111 223334444444332 334457899999999999
Q ss_pred HHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHH
Q psy1503 225 ARAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGC 260 (265)
Q Consensus 225 ARal~~~~~illLDEp~s~LD~~~~~~i~~~~i~~~ 260 (265)
|||++.+|+++||||||++||+.+.+.+++ .+..+
T Consensus 147 a~al~~~p~llllDEP~~~LD~~~~~~l~~-~l~~~ 181 (213)
T cd03262 147 ARALAMNPKVMLFDEPTSALDPELVGEVLD-VMKDL 181 (213)
T ss_pred HHHHhcCCCEEEEeCCccCCCHHHHHHHHH-HHHHH
Confidence 999999999999999999999999888755 44444
No 118
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=4.4e-38 Score=275.62 Aligned_cols=158 Identities=25% Similarity=0.446 Sum_probs=128.3
Q ss_pred EEEEeEEEEeCCCCCCcceeeceEEEcCCcEEEEEcCCCChHHHHHHHHhcCcCCCccEEEEcCe---------------
Q psy1503 89 VSLDNVTAQWSLQNADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSLGGT--------------- 153 (265)
Q Consensus 89 i~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g~--------------- 153 (265)
++++|++++|+. ..++++|+||++++|++++|+||||||||||+++|+|+++|++|+|.++|.
T Consensus 1 l~~~~l~~~~~~--~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 78 (241)
T cd03256 1 IEVENLSKTYPN--GKKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGTDINKLKGKALRQLRR 78 (241)
T ss_pred CEEeeEEEecCC--ccEEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEeccccCHhHHHHHHh
Confidence 468999999963 146899999999999999999999999999999999999999999999872
Q ss_pred -EEEEecCCCCcc-ccHHHHHhcCCcc------------c---HHHHHHHHHHhcchhHHhcCCCCCccccCCCCCCCCH
Q psy1503 154 -VSYASQEPWIFA-ATIRQNILFGLPY------------L---RRRYADVIRVCALQDDFDSLPNGDFTVVGERGASLSG 216 (265)
Q Consensus 154 -i~~v~Q~~~l~~-~ti~eni~~~~~~------------~---~~~~~~~~~~~~l~~~i~~l~~g~~t~vg~~g~~LSg 216 (265)
++|++|++.+|+ .|++||+.++... . .++..++++..++.. .....+.+|||
T Consensus 79 ~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LS~ 147 (241)
T cd03256 79 QIGMIFQQFNLIERLSVLENVLSGRLGRRSTWRSLFGLFPKEEKQRALAALERVGLLD-----------KAYQRADQLSG 147 (241)
T ss_pred ccEEEcccCcccccCcHHHHHHhhhcccchhhhhhcccCcHHHHHHHHHHHHHcCChh-----------hhCCCcccCCH
Confidence 899999998886 6999999864311 0 112223333333322 23456679999
Q ss_pred HHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHH
Q psy1503 217 GQKARINLARAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGC 260 (265)
Q Consensus 217 GqrqRialARal~~~~~illLDEp~s~LD~~~~~~i~~~~i~~~ 260 (265)
|||||++|||||+.+|+++||||||++||+.+...+++ .+..+
T Consensus 148 G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~-~l~~~ 190 (241)
T cd03256 148 GQQQRVAIARALMQQPKLILADEPVASLDPASSRQVMD-LLKRI 190 (241)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHH-HHHHH
Confidence 99999999999999999999999999999999988865 44444
No 119
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=5.5e-38 Score=292.46 Aligned_cols=161 Identities=27% Similarity=0.451 Sum_probs=134.0
Q ss_pred CCcEEEEeEEEEeCCCCCCcceeeceEEEcCCcEEEEEcCCCChHHHHHHHHhcCcCCCccEEEEcCe-----------E
Q psy1503 86 KGHVSLDNVTAQWSLQNADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSLGGT-----------V 154 (265)
Q Consensus 86 ~~~i~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g~-----------i 154 (265)
...++++|++++|+. .++|+++||+|++|++++|+||||||||||+++|+|+.+|++|+|.++|. +
T Consensus 17 ~~~l~l~~v~~~~~~---~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~~~r~i 93 (377)
T PRK11607 17 TPLLEIRNLTKSFDG---QHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDLSHVPPYQRPI 93 (377)
T ss_pred CceEEEEeEEEEECC---EEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHCCE
Confidence 346999999999953 46899999999999999999999999999999999999999999999984 8
Q ss_pred EEEecCCCCcc-ccHHHHHhcCCcc---c----HHHHHHHHHHhcchhHHhcCCCCCccccCCCCCCCCHHHHHHHHHHH
Q psy1503 155 SYASQEPWIFA-ATIRQNILFGLPY---L----RRRYADVIRVCALQDDFDSLPNGDFTVVGERGASLSGGQKARINLAR 226 (265)
Q Consensus 155 ~~v~Q~~~l~~-~ti~eni~~~~~~---~----~~~~~~~~~~~~l~~~i~~l~~g~~t~vg~~g~~LSgGqrqRialAR 226 (265)
+|++|++.+|+ .|+.|||.|+... . .+++.++++..++.+..+ ....+|||||||||+|||
T Consensus 94 g~vfQ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~~v~~~l~~l~L~~~~~-----------~~~~~LSgGq~QRVaLAR 162 (377)
T PRK11607 94 NMMFQSYALFPHMTVEQNIAFGLKQDKLPKAEIASRVNEMLGLVHMQEFAK-----------RKPHQLSGGQRQRVALAR 162 (377)
T ss_pred EEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhc-----------CChhhCCHHHHHHHHHHH
Confidence 99999999997 5999999987421 1 123344455555543333 345689999999999999
Q ss_pred HHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHHh
Q psy1503 227 AVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGCL 261 (265)
Q Consensus 227 al~~~~~illLDEp~s~LD~~~~~~i~~~~i~~~l 261 (265)
||+.+|+++|||||||+||..++..+.+ .+..+.
T Consensus 163 AL~~~P~lLLLDEP~s~LD~~~r~~l~~-~l~~l~ 196 (377)
T PRK11607 163 SLAKRPKLLLLDEPMGALDKKLRDRMQL-EVVDIL 196 (377)
T ss_pred HHhcCCCEEEEeCCcccCCHHHHHHHHH-HHHHHH
Confidence 9999999999999999999999988865 334443
No 120
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6e-38 Score=276.31 Aligned_cols=162 Identities=23% Similarity=0.362 Sum_probs=133.3
Q ss_pred cEEEEeEEEEeCCCCCCcceeeceEEEcCCcEEEEEcCCCChHHHHHHHHhcCcC---CCccEEEEcCe-----------
Q psy1503 88 HVSLDNVTAQWSLQNADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELR---ISSGKVSLGGT----------- 153 (265)
Q Consensus 88 ~i~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~---~~~G~i~~~g~----------- 153 (265)
.++++|+++.|+. .++|+|+||++++|++++|+||||||||||+++|+|+++ |++|+|.++|.
T Consensus 2 ~~~~~~l~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i~~~~~~~~~ 78 (246)
T PRK14269 2 IAKTTNLNLFYGK---KQALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVALR 78 (246)
T ss_pred ceeeeeeEEEECC---EeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEecccCCHHHHh
Confidence 4789999999963 468999999999999999999999999999999999974 79999999873
Q ss_pred --EEEEecCCCCccccHHHHHhcCCcc---------cHHHHHHHHHHhcchhHHhcCCCCCccccCCCCCCCCHHHHHHH
Q psy1503 154 --VSYASQEPWIFAATIRQNILFGLPY---------LRRRYADVIRVCALQDDFDSLPNGDFTVVGERGASLSGGQKARI 222 (265)
Q Consensus 154 --i~~v~Q~~~l~~~ti~eni~~~~~~---------~~~~~~~~~~~~~l~~~i~~l~~g~~t~vg~~g~~LSgGqrqRi 222 (265)
++|++|++.+|+.|++||+.++... ..+++.++++.+++.+.+.. ...+.+.+||||||||+
T Consensus 79 ~~i~~~~q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-------~~~~~~~~LS~G~~qrv 151 (246)
T PRK14269 79 KNVGMVFQQPNVFVKSIYENISYAPKLHGMIKNKDEEEALVVDCLQKVGLFEEVKD-------KLKQNALALSGGQQQRL 151 (246)
T ss_pred hhEEEEecCCccccccHHHHhhhHHhhcCcccChHHHHHHHHHHHHHcCCChhhhH-------HhcCCcccCCHHHHHHH
Confidence 8999999999999999999875211 11234455566666443322 23456789999999999
Q ss_pred HHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHH
Q psy1503 223 NLARAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGC 260 (265)
Q Consensus 223 alARal~~~~~illLDEp~s~LD~~~~~~i~~~~i~~~ 260 (265)
+|||||+++|+++||||||++||+.+...+.+ ++..+
T Consensus 152 ~laral~~~p~lllLDEP~~~LD~~~~~~l~~-~l~~~ 188 (246)
T PRK14269 152 CIARALAIKPKLLLLDEPTSALDPISSGVIEE-LLKEL 188 (246)
T ss_pred HHHHHHhcCCCEEEEcCCcccCCHHHHHHHHH-HHHHH
Confidence 99999999999999999999999999888755 55444
No 121
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=4.8e-38 Score=270.52 Aligned_cols=156 Identities=27% Similarity=0.450 Sum_probs=128.7
Q ss_pred EEEEeEEEEeCCCCCCcceeeceEEEcCCcEEEEEcCCCChHHHHHHHHhcCcCCCccEEEEcCe------------EEE
Q psy1503 89 VSLDNVTAQWSLQNADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSLGGT------------VSY 156 (265)
Q Consensus 89 i~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g~------------i~~ 156 (265)
|+++|++++|+. .++++|+||++++| +++|+||||||||||+++|+|+++|++|+|.++|. ++|
T Consensus 1 i~~~~~~~~~~~---~~~l~~vs~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i~~ 76 (211)
T cd03264 1 LQLENLTKRYGK---KRALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPSSGTIRIDGQDVLKQPQKLRRRIGY 76 (211)
T ss_pred CEEEEEEEEECC---EEEEcceeEEEcCC-cEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCCccccchHHHHhheEE
Confidence 478999999953 46899999999999 99999999999999999999999999999999872 899
Q ss_pred EecCCCCccc-cHHHHHhcCCc---cc----HHHHHHHHHHhcchhHHhcCCCCCccccCCCCCCCCHHHHHHHHHHHHH
Q psy1503 157 ASQEPWIFAA-TIRQNILFGLP---YL----RRRYADVIRVCALQDDFDSLPNGDFTVVGERGASLSGGQKARINLARAV 228 (265)
Q Consensus 157 v~Q~~~l~~~-ti~eni~~~~~---~~----~~~~~~~~~~~~l~~~i~~l~~g~~t~vg~~g~~LSgGqrqRialARal 228 (265)
++|++.+|+. |+.||+.+... .. .++..++++.+++.+..+ ....+||||||||++||||+
T Consensus 77 ~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~qrv~la~al 145 (211)
T cd03264 77 LPQEFGVYPNFTVREFLDYIAWLKGIPSKEVKARVDEVLELVNLGDRAK-----------KKIGSLSGGMRRRVGIAQAL 145 (211)
T ss_pred ecCCCcccccCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCHHHHh-----------CchhhCCHHHHHHHHHHHHH
Confidence 9999999875 99999986321 11 223444555555544332 34468999999999999999
Q ss_pred ccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHH
Q psy1503 229 YKNADIYLLDDPLSAVDMHVGKHLFEDCISGC 260 (265)
Q Consensus 229 ~~~~~illLDEp~s~LD~~~~~~i~~~~i~~~ 260 (265)
+.+|+++||||||++||+.+.+.+++ .+..+
T Consensus 146 ~~~p~llllDEPt~~LD~~~~~~l~~-~l~~~ 176 (211)
T cd03264 146 VGDPSILIVDEPTAGLDPEERIRFRN-LLSEL 176 (211)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHH-HHHHH
Confidence 99999999999999999999988865 44443
No 122
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=5.8e-38 Score=283.09 Aligned_cols=161 Identities=24% Similarity=0.443 Sum_probs=131.7
Q ss_pred EEEEeEEEEeCCCC--CCcceeeceEEEcCCcEEEEEcCCCChHHHHHHHHhcCcCCCccEEEEcCe-------------
Q psy1503 89 VSLDNVTAQWSLQN--ADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSLGGT------------- 153 (265)
Q Consensus 89 i~~~~~~~~~~~~~--~~~~l~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g~------------- 153 (265)
++++|++++|+... ..++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.
T Consensus 3 l~~~~l~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 82 (290)
T PRK13634 3 ITFQKVEHRYQYKTPFERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTIGERVITAGKKNKKLKP 82 (290)
T ss_pred EEEEEEEEEECCCCcccccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHH
Confidence 78999999996421 146999999999999999999999999999999999999999999999872
Q ss_pred ----EEEEecCC--CCccccHHHHHhcCCc---ccH----HHHHHHHHHhcchhHHhcCCCCCccccCCCCCCCCHHHHH
Q psy1503 154 ----VSYASQEP--WIFAATIRQNILFGLP---YLR----RRYADVIRVCALQDDFDSLPNGDFTVVGERGASLSGGQKA 220 (265)
Q Consensus 154 ----i~~v~Q~~--~l~~~ti~eni~~~~~---~~~----~~~~~~~~~~~l~~~i~~l~~g~~t~vg~~g~~LSgGqrq 220 (265)
++|++|+| .+|+.|+.|||.|+.. ... +++.++++.+++...+ ...+..+|||||||
T Consensus 83 ~~~~ig~v~q~~~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~----------~~~~~~~LSgGq~q 152 (290)
T PRK13634 83 LRKKVGIVFQFPEHQLFEETVEKDICFGPMNFGVSEEDAKQKAREMIELVGLPEEL----------LARSPFELSGGQMR 152 (290)
T ss_pred HHhhEEEEeeCchhhhhhhhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCChhh----------hhCCcccCCHHHHH
Confidence 79999997 5788899999987632 111 2334455555553222 13456789999999
Q ss_pred HHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHH
Q psy1503 221 RINLARAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGC 260 (265)
Q Consensus 221 RialARal~~~~~illLDEp~s~LD~~~~~~i~~~~i~~~ 260 (265)
|++|||||+.+|+++||||||++||+.+...+++ .+..+
T Consensus 153 rv~lAraL~~~P~llllDEPt~~LD~~~~~~l~~-~L~~l 191 (290)
T PRK13634 153 RVAIAGVLAMEPEVLVLDEPTAGLDPKGRKEMME-MFYKL 191 (290)
T ss_pred HHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHH-HHHHH
Confidence 9999999999999999999999999999988865 34444
No 123
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=100.00 E-value=5.8e-38 Score=271.67 Aligned_cols=158 Identities=27% Similarity=0.472 Sum_probs=127.6
Q ss_pred EEEEeEEEEeCCCCCCcceeeceEEEcCCcEEEEEcCCCChHHHHHHHHhcCcCCCccEEEEcCe--------------E
Q psy1503 89 VSLDNVTAQWSLQNADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSLGGT--------------V 154 (265)
Q Consensus 89 i~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g~--------------i 154 (265)
|+++|++++|+. .++++++||++++|++++|+||||||||||+++|+|+++|++|+|.++|. +
T Consensus 1 l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i 77 (222)
T cd03224 1 LEVENLNAGYGK---SQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGLPPHERARAGI 77 (222)
T ss_pred CEEeeEEeecCC---eeEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCCCCHHHHHhcCe
Confidence 478999999963 46899999999999999999999999999999999999999999999872 8
Q ss_pred EEEecCCCCccc-cHHHHHhcCCccc-----HHHHHHHHHHhcchhHHhcCCCCCccccCCCCCCCCHHHHHHHHHHHHH
Q psy1503 155 SYASQEPWIFAA-TIRQNILFGLPYL-----RRRYADVIRVCALQDDFDSLPNGDFTVVGERGASLSGGQKARINLARAV 228 (265)
Q Consensus 155 ~~v~Q~~~l~~~-ti~eni~~~~~~~-----~~~~~~~~~~~~l~~~i~~l~~g~~t~vg~~g~~LSgGqrqRialARal 228 (265)
+|++|++.+|+. |++||+.++.... .++..++++.. ..++ ........+||||||||++|||||
T Consensus 78 ~~~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~l~~~------~~l~----~~~~~~~~~LS~G~~qrv~laral 147 (222)
T cd03224 78 GYVPEGRRIFPELTVEENLLLGAYARRRAKRKARLERVYELF------PRLK----ERRKQLAGTLSGGEQQMLAIARAL 147 (222)
T ss_pred EEeccccccCCCCcHHHHHHHHhhhcCchhHHHHHHHHHHHH------Hhhh----hhhhCchhhCCHHHHHHHHHHHHH
Confidence 999999999875 9999998753221 11122222222 1111 123456678999999999999999
Q ss_pred ccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHH
Q psy1503 229 YKNADIYLLDDPLSAVDMHVGKHLFEDCISGC 260 (265)
Q Consensus 229 ~~~~~illLDEp~s~LD~~~~~~i~~~~i~~~ 260 (265)
+.+|+++||||||++||+.+...+++ .+..+
T Consensus 148 ~~~p~llllDEPt~~LD~~~~~~l~~-~l~~~ 178 (222)
T cd03224 148 MSRPKLLLLDEPSEGLAPKIVEEIFE-AIREL 178 (222)
T ss_pred hcCCCEEEECCCcccCCHHHHHHHHH-HHHHH
Confidence 99999999999999999999988865 44443
No 124
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=5.9e-38 Score=273.84 Aligned_cols=160 Identities=28% Similarity=0.409 Sum_probs=129.9
Q ss_pred EEEEeEEEEeCCCC-CCcceeeceEEEcCCcEEEEEcCCCChHHHHHHHHhcCcCCCccEEEEcCe--------------
Q psy1503 89 VSLDNVTAQWSLQN-ADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSLGGT-------------- 153 (265)
Q Consensus 89 i~~~~~~~~~~~~~-~~~~l~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g~-------------- 153 (265)
|+++|++++|+... ..++++++||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.
T Consensus 2 i~~~~l~~~~~~~~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (233)
T cd03258 2 IELKNVSKVFGDTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGSVLVDGTDLTLLSGKELRKAR 81 (233)
T ss_pred eEEecceEEccCCCCceeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHH
Confidence 78999999996321 126999999999999999999999999999999999999999999999862
Q ss_pred --EEEEecCCCCcc-ccHHHHHhcCCc---cc----HHHHHHHHHHhcchhHHhcCCCCCccccCCCCCCCCHHHHHHHH
Q psy1503 154 --VSYASQEPWIFA-ATIRQNILFGLP---YL----RRRYADVIRVCALQDDFDSLPNGDFTVVGERGASLSGGQKARIN 223 (265)
Q Consensus 154 --i~~v~Q~~~l~~-~ti~eni~~~~~---~~----~~~~~~~~~~~~l~~~i~~l~~g~~t~vg~~g~~LSgGqrqRia 223 (265)
++|++|++.+|+ .|+.||+.++.. .. .++..+.++..++.+. ......+||||||||++
T Consensus 82 ~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LS~G~~qrv~ 150 (233)
T cd03258 82 RRIGMIFQHFNLLSSRTVFENVALPLEIAGVPKAEIEERVLELLELVGLEDK-----------ADAYPAQLSGGQKQRVG 150 (233)
T ss_pred hheEEEccCcccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhh-----------hhcChhhCCHHHHHHHH
Confidence 899999999997 699999986421 11 1223334444444332 23445789999999999
Q ss_pred HHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHH
Q psy1503 224 LARAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGC 260 (265)
Q Consensus 224 lARal~~~~~illLDEp~s~LD~~~~~~i~~~~i~~~ 260 (265)
||||++.+|+++||||||++||+.+...+++ .+..+
T Consensus 151 la~al~~~p~lllLDEP~~~LD~~~~~~l~~-~l~~~ 186 (233)
T cd03258 151 IARALANNPKVLLCDEATSALDPETTQSILA-LLRDI 186 (233)
T ss_pred HHHHHhcCCCEEEecCCCCcCCHHHHHHHHH-HHHHH
Confidence 9999999999999999999999999988865 44444
No 125
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=100.00 E-value=1.3e-37 Score=270.78 Aligned_cols=161 Identities=30% Similarity=0.423 Sum_probs=132.0
Q ss_pred CcEEEEeEEEEeCCCCCCcceeeceEEEcCCcEEEEEcCCCChHHHHHHHHhcCcCCCccEEEEcCe-------------
Q psy1503 87 GHVSLDNVTAQWSLQNADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSLGGT------------- 153 (265)
Q Consensus 87 ~~i~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g~------------- 153 (265)
..|+++|+++.|+. .++++|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.
T Consensus 6 ~~i~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 82 (225)
T PRK10247 6 PLLQLQNVGYLAGD---AKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDISTLKPEIYRQQ 82 (225)
T ss_pred ceEEEeccEEeeCC---ceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEcCcCCHHHHHhc
Confidence 46999999999963 46999999999999999999999999999999999999999999999872
Q ss_pred EEEEecCCCCccccHHHHHhcCCcc-----cHHHHHHHHHHhcchhHHhcCCCCCccccCCCCCCCCHHHHHHHHHHHHH
Q psy1503 154 VSYASQEPWIFAATIRQNILFGLPY-----LRRRYADVIRVCALQDDFDSLPNGDFTVVGERGASLSGGQKARINLARAV 228 (265)
Q Consensus 154 i~~v~Q~~~l~~~ti~eni~~~~~~-----~~~~~~~~~~~~~l~~~i~~l~~g~~t~vg~~g~~LSgGqrqRialARal 228 (265)
++|++|++.+|+.|++||+.++... ..++..++++.+++.+ +.......+||||||||++|||||
T Consensus 83 i~~~~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~~l~~----------~~~~~~~~~LS~G~~qrv~laral 152 (225)
T PRK10247 83 VSYCAQTPTLFGDTVYDNLIFPWQIRNQQPDPAIFLDDLERFALPD----------TILTKNIAELSGGEKQRISLIRNL 152 (225)
T ss_pred cEEEecccccccccHHHHHHhHHhhcCCChHHHHHHHHHHHcCCCh----------HHhcCCcccCCHHHHHHHHHHHHH
Confidence 8999999999988999999864211 1122233344443321 233456789999999999999999
Q ss_pred ccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHHh
Q psy1503 229 YKNADIYLLDDPLSAVDMHVGKHLFEDCISGCL 261 (265)
Q Consensus 229 ~~~~~illLDEp~s~LD~~~~~~i~~~~i~~~l 261 (265)
+++|+++||||||++||+.+...+.+ ++..+.
T Consensus 153 ~~~p~llllDEPt~~LD~~~~~~l~~-~l~~~~ 184 (225)
T PRK10247 153 QFMPKVLLLDEITSALDESNKHNVNE-IIHRYV 184 (225)
T ss_pred hcCCCEEEEeCCcccCCHHHHHHHHH-HHHHHH
Confidence 99999999999999999999887754 454443
No 126
>PRK10908 cell division protein FtsE; Provisional
Probab=100.00 E-value=1e-37 Score=270.63 Aligned_cols=158 Identities=25% Similarity=0.414 Sum_probs=128.9
Q ss_pred EEEEeEEEEeCCCCCCcceeeceEEEcCCcEEEEEcCCCChHHHHHHHHhcCcCCCccEEEEcCe---------------
Q psy1503 89 VSLDNVTAQWSLQNADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSLGGT--------------- 153 (265)
Q Consensus 89 i~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g~--------------- 153 (265)
++++|++++|+. ..++++|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.
T Consensus 2 l~~~~l~~~~~~--~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~ 79 (222)
T PRK10908 2 IRFEHVSKAYLG--GRQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRLKNREVPFLRR 79 (222)
T ss_pred EEEEeeEEEecC--CCeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCChhHHHHHHh
Confidence 789999999942 246899999999999999999999999999999999999999999999872
Q ss_pred -EEEEecCCCCc-cccHHHHHhcCCc---ccH----HHHHHHHHHhcchhHHhcCCCCCccccCCCCCCCCHHHHHHHHH
Q psy1503 154 -VSYASQEPWIF-AATIRQNILFGLP---YLR----RRYADVIRVCALQDDFDSLPNGDFTVVGERGASLSGGQKARINL 224 (265)
Q Consensus 154 -i~~v~Q~~~l~-~~ti~eni~~~~~---~~~----~~~~~~~~~~~l~~~i~~l~~g~~t~vg~~g~~LSgGqrqRial 224 (265)
++|++|++.++ +.|++||+.++.. ... +++.+.++..++.+.+ .....+||||||||++|
T Consensus 80 ~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LS~G~~qrv~l 148 (222)
T PRK10908 80 QIGMIFQDHHLLMDRTVYDNVAIPLIIAGASGDDIRRRVSAALDKVGLLDKA-----------KNFPIQLSGGEQQRVGI 148 (222)
T ss_pred heEEEecCccccccccHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCChhhh-----------hCCchhCCHHHHHHHHH
Confidence 79999999875 5699999987521 111 1233344444443332 23457899999999999
Q ss_pred HHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHH
Q psy1503 225 ARAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGC 260 (265)
Q Consensus 225 ARal~~~~~illLDEp~s~LD~~~~~~i~~~~i~~~ 260 (265)
|||++.+|+++||||||++||+.+.+.+++ ++..+
T Consensus 149 aral~~~p~llllDEPt~~LD~~~~~~l~~-~l~~~ 183 (222)
T PRK10908 149 ARAVVNKPAVLLADEPTGNLDDALSEGILR-LFEEF 183 (222)
T ss_pred HHHHHcCCCEEEEeCCCCcCCHHHHHHHHH-HHHHH
Confidence 999999999999999999999999988865 44444
No 127
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.2e-37 Score=273.74 Aligned_cols=159 Identities=25% Similarity=0.417 Sum_probs=131.9
Q ss_pred cEEEEeEEEEeCCCCCCcceeeceEEEcCCcEEEEEcCCCChHHHHHHHHhcCcCCCccEEEEcCe-------------E
Q psy1503 88 HVSLDNVTAQWSLQNADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSLGGT-------------V 154 (265)
Q Consensus 88 ~i~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g~-------------i 154 (265)
.++++|++++|+. .++++|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|. +
T Consensus 3 ~l~~~~l~~~~~~---~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i 79 (241)
T PRK14250 3 EIEFKEVSYSSFG---KEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSILIDGVDIKTIDVIDLRRKI 79 (241)
T ss_pred eEEEEeEEEEeCC---eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcChHHhhhcE
Confidence 4899999999953 46899999999999999999999999999999999999999999999872 8
Q ss_pred EEEecCCCCccccHHHHHhcCCcc---cHHHHHHHHHHhcchhHHhcCCCCCccccCCCCCCCCHHHHHHHHHHHHHccC
Q psy1503 155 SYASQEPWIFAATIRQNILFGLPY---LRRRYADVIRVCALQDDFDSLPNGDFTVVGERGASLSGGQKARINLARAVYKN 231 (265)
Q Consensus 155 ~~v~Q~~~l~~~ti~eni~~~~~~---~~~~~~~~~~~~~l~~~i~~l~~g~~t~vg~~g~~LSgGqrqRialARal~~~ 231 (265)
+|++|++.+|+.|++||+.++... ...+..++++.+++... .......+||||||||++||||++.+
T Consensus 80 ~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~----------~~~~~~~~LS~G~~qrl~la~al~~~ 149 (241)
T PRK14250 80 GMVFQQPHLFEGTVKDNIEYGPMLKGEKNVDVEYYLSIVGLNKE----------YATRDVKNLSGGEAQRVSIARTLANN 149 (241)
T ss_pred EEEecCchhchhhHHHHHhcchhhcCcHHHHHHHHHHHcCCCHH----------HhhCCcccCCHHHHHHHHHHHHHhcC
Confidence 999999999989999999875321 12234445555555321 12245678999999999999999999
Q ss_pred CCEEEEeCCCCCcCHHHHHHHHHHHHHHH
Q psy1503 232 ADIYLLDDPLSAVDMHVGKHLFEDCISGC 260 (265)
Q Consensus 232 ~~illLDEp~s~LD~~~~~~i~~~~i~~~ 260 (265)
|+++||||||++||+.+...+++ .+..+
T Consensus 150 p~llllDEPt~~LD~~~~~~l~~-~l~~~ 177 (241)
T PRK14250 150 PEVLLLDEPTSALDPTSTEIIEE-LIVKL 177 (241)
T ss_pred CCEEEEeCCcccCCHHHHHHHHH-HHHHH
Confidence 99999999999999999888754 44444
No 128
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=100.00 E-value=1.8e-37 Score=265.60 Aligned_cols=157 Identities=25% Similarity=0.352 Sum_probs=132.0
Q ss_pred EEEEeEEEEeCCCCCCcceeeceEEEcCCcEEEEEcCCCChHHHHHHHHhcCcCCCccEEEEcCe------------EEE
Q psy1503 89 VSLDNVTAQWSLQNADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSLGGT------------VSY 156 (265)
Q Consensus 89 i~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g~------------i~~ 156 (265)
++++|+++.|+. .++++++||+|++|++++|+|+||||||||+++|+|+++|++|+|.++|. ++|
T Consensus 1 l~i~~l~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~ 77 (201)
T cd03231 1 LEADELTCERDG---RALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGPLDFQRDSIARGLLY 77 (201)
T ss_pred CEEEEEEEEeCC---ceeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccccHHhhhheEE
Confidence 468999999963 46899999999999999999999999999999999999999999999872 899
Q ss_pred EecCCCCc-cccHHHHHhcCCc-ccHHHHHHHHHHhcchhHHhcCCCCCccccCCCCCCCCHHHHHHHHHHHHHccCCCE
Q psy1503 157 ASQEPWIF-AATIRQNILFGLP-YLRRRYADVIRVCALQDDFDSLPNGDFTVVGERGASLSGGQKARINLARAVYKNADI 234 (265)
Q Consensus 157 v~Q~~~l~-~~ti~eni~~~~~-~~~~~~~~~~~~~~l~~~i~~l~~g~~t~vg~~g~~LSgGqrqRialARal~~~~~i 234 (265)
++|++.++ ..|++||+.+... ...+++.++++..++..... ....+||||||||++||||++++|++
T Consensus 78 ~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~qrl~laral~~~p~l 146 (201)
T cd03231 78 LGHAPGIKTTLSVLENLRFWHADHSDEQVEEALARVGLNGFED-----------RPVAQLSAGQQRRVALARLLLSGRPL 146 (201)
T ss_pred eccccccCCCcCHHHHHHhhcccccHHHHHHHHHHcCChhhhc-----------CchhhCCHHHHHHHHHHHHHhcCCCE
Confidence 99999887 4799999987543 23445566666666654322 23468999999999999999999999
Q ss_pred EEEeCCCCCcCHHHHHHHHHHHHHHH
Q psy1503 235 YLLDDPLSAVDMHVGKHLFEDCISGC 260 (265)
Q Consensus 235 llLDEp~s~LD~~~~~~i~~~~i~~~ 260 (265)
+||||||++||+.+.+.+.+ .+..+
T Consensus 147 lllDEPt~~LD~~~~~~l~~-~l~~~ 171 (201)
T cd03231 147 WILDEPTTALDKAGVARFAE-AMAGH 171 (201)
T ss_pred EEEeCCCCCCCHHHHHHHHH-HHHHH
Confidence 99999999999999988865 44444
No 129
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.2e-37 Score=267.94 Aligned_cols=156 Identities=29% Similarity=0.447 Sum_probs=129.0
Q ss_pred EEEEeEEEEeCCCCCCcceeeceEEEcCCcEEEEEcCCCChHHHHHHHHhcCcCCCccEEEEcCe-----------EEEE
Q psy1503 89 VSLDNVTAQWSLQNADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSLGGT-----------VSYA 157 (265)
Q Consensus 89 i~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g~-----------i~~v 157 (265)
|+++|++++|+. .. .|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|. ++|+
T Consensus 1 i~~~~l~~~~~~---~~--~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~~~~~~~~i~~~ 75 (211)
T cd03298 1 VRLDKIRFSYGE---QP--MHFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRVLINGVDVTAAPPADRPVSML 75 (211)
T ss_pred CEEEeEEEEeCC---Ee--cceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCcCCHhHccEEEE
Confidence 468999999963 22 3999999999999999999999999999999999999999999883 8999
Q ss_pred ecCCCCccc-cHHHHHhcCCcc-------cHHHHHHHHHHhcchhHHhcCCCCCccccCCCCCCCCHHHHHHHHHHHHHc
Q psy1503 158 SQEPWIFAA-TIRQNILFGLPY-------LRRRYADVIRVCALQDDFDSLPNGDFTVVGERGASLSGGQKARINLARAVY 229 (265)
Q Consensus 158 ~Q~~~l~~~-ti~eni~~~~~~-------~~~~~~~~~~~~~l~~~i~~l~~g~~t~vg~~g~~LSgGqrqRialARal~ 229 (265)
+|++.+|+. |++||+.++... .+++..++++.+++.+..... ..+||||||||++||||++
T Consensus 76 ~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~LS~G~~qrv~ia~al~ 144 (211)
T cd03298 76 FQENNLFAHLTVEQNVGLGLSPGLKLTAEDRQAIEVALARVGLAGLEKRL-----------PGELSGGERQRVALARVLV 144 (211)
T ss_pred ecccccCCCCcHHHHHhcccccccCccHHHHHHHHHHHHHcCCHHHHhCC-----------cccCCHHHHHHHHHHHHHh
Confidence 999999975 999999875321 123445566666665544433 3589999999999999999
Q ss_pred cCCCEEEEeCCCCCcCHHHHHHHHHHHHHHHh
Q psy1503 230 KNADIYLLDDPLSAVDMHVGKHLFEDCISGCL 261 (265)
Q Consensus 230 ~~~~illLDEp~s~LD~~~~~~i~~~~i~~~l 261 (265)
.+|+++||||||++||+.+...+.+ .+..+.
T Consensus 145 ~~p~llllDEP~~~LD~~~~~~l~~-~l~~~~ 175 (211)
T cd03298 145 RDKPVLLLDEPFAALDPALRAEMLD-LVLDLH 175 (211)
T ss_pred cCCCEEEEcCCcccCCHHHHHHHHH-HHHHHH
Confidence 9999999999999999999988755 444443
No 130
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.2e-37 Score=279.64 Aligned_cols=162 Identities=25% Similarity=0.417 Sum_probs=134.3
Q ss_pred CcEEEEeEEEEeCCCCCCcceeeceEEEcCCcEEEEEcCCCChHHHHHHHHhcCcCCCccEEEEcCe-------------
Q psy1503 87 GHVSLDNVTAQWSLQNADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSLGGT------------- 153 (265)
Q Consensus 87 ~~i~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g~------------- 153 (265)
..++++|++++|+.. ..++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.
T Consensus 4 ~~l~~~~l~~~~~~~-~~~~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~p~~G~i~~~g~~i~~~~~~~~~~~ 82 (279)
T PRK13635 4 EIIRVEHISFRYPDA-ATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTITVGGMVLSEETVWDVRRQ 82 (279)
T ss_pred ceEEEEEEEEEeCCC-CccceeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHhhh
Confidence 368999999999632 346999999999999999999999999999999999999999999999983
Q ss_pred EEEEecCC--CCccccHHHHHhcCCc---cc----HHHHHHHHHHhcchhHHhcCCCCCccccCCCCCCCCHHHHHHHHH
Q psy1503 154 VSYASQEP--WIFAATIRQNILFGLP---YL----RRRYADVIRVCALQDDFDSLPNGDFTVVGERGASLSGGQKARINL 224 (265)
Q Consensus 154 i~~v~Q~~--~l~~~ti~eni~~~~~---~~----~~~~~~~~~~~~l~~~i~~l~~g~~t~vg~~g~~LSgGqrqRial 224 (265)
++|++|++ .+++.|+.|||.++.. .. .++..++++.+++...+... ...||||||||++|
T Consensus 83 i~~~~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~-----------~~~LS~G~~qrv~l 151 (279)
T PRK13635 83 VGMVFQNPDNQFVGATVQDDVAFGLENIGVPREEMVERVDQALRQVGMEDFLNRE-----------PHRLSGGQKQRVAI 151 (279)
T ss_pred eEEEEeCHHHhcccccHHHHHhhhHhhCCCCHHHHHHHHHHHHHHcCChhhhhCC-----------cccCCHHHHHHHHH
Confidence 89999998 3556799999987531 11 13345556666666554443 45899999999999
Q ss_pred HHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHHh
Q psy1503 225 ARAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGCL 261 (265)
Q Consensus 225 ARal~~~~~illLDEp~s~LD~~~~~~i~~~~i~~~l 261 (265)
||||+.+|+++||||||++||+.+...+++ ++..+-
T Consensus 152 aral~~~p~lllLDEPt~gLD~~~~~~l~~-~l~~l~ 187 (279)
T PRK13635 152 AGVLALQPDIIILDEATSMLDPRGRREVLE-TVRQLK 187 (279)
T ss_pred HHHHHcCCCEEEEeCCcccCCHHHHHHHHH-HHHHHH
Confidence 999999999999999999999999998865 444443
No 131
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=100.00 E-value=7e-38 Score=273.03 Aligned_cols=157 Identities=28% Similarity=0.486 Sum_probs=128.3
Q ss_pred EEEEeEEEEeCCCCCCcceeeceEEEcCCcEEEEEcCCCChHHHHHHHHhcCcCCCccEEEEcCe--------------E
Q psy1503 89 VSLDNVTAQWSLQNADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSLGGT--------------V 154 (265)
Q Consensus 89 i~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g~--------------i 154 (265)
++++|++++|+. +++|+|+||++++|++++|+||||||||||+++|+|+++|++|+|.++|. +
T Consensus 1 l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i 77 (232)
T cd03218 1 LRAENLSKRYGK---RKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDITKLPMHKRARLGI 77 (232)
T ss_pred CeEEEEEEEeCC---EEeeccceeEecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccCCHhHHHhccE
Confidence 478999999963 46899999999999999999999999999999999999999999999872 8
Q ss_pred EEEecCCCCccc-cHHHHHhcCCc---ccH----HHHHHHHHHhcchhHHhcCCCCCccccCCCCCCCCHHHHHHHHHHH
Q psy1503 155 SYASQEPWIFAA-TIRQNILFGLP---YLR----RRYADVIRVCALQDDFDSLPNGDFTVVGERGASLSGGQKARINLAR 226 (265)
Q Consensus 155 ~~v~Q~~~l~~~-ti~eni~~~~~---~~~----~~~~~~~~~~~l~~~i~~l~~g~~t~vg~~g~~LSgGqrqRialAR 226 (265)
+|++|++.+|+. |++||+.++.. ... ++..+.++..++. ........+||||||||++|||
T Consensus 78 ~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-----------~~~~~~~~~LS~G~~qrl~la~ 146 (232)
T cd03218 78 GYLPQEASIFRKLTVEENILAVLEIRGLSKKEREEKLEELLEEFHIT-----------HLRKSKASSLSGGERRRVEIAR 146 (232)
T ss_pred EEecCCccccccCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCh-----------hhhhCChhhCCHHHHHHHHHHH
Confidence 999999999875 99999986432 111 1222333333332 2334556799999999999999
Q ss_pred HHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHH
Q psy1503 227 AVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGC 260 (265)
Q Consensus 227 al~~~~~illLDEp~s~LD~~~~~~i~~~~i~~~ 260 (265)
|++.+|+++||||||++||+.+.+.+++ .+..+
T Consensus 147 al~~~p~llllDEPt~~LD~~~~~~~~~-~l~~~ 179 (232)
T cd03218 147 ALATNPKFLLLDEPFAGVDPIAVQDIQK-IIKIL 179 (232)
T ss_pred HHhcCCCEEEecCCcccCCHHHHHHHHH-HHHHH
Confidence 9999999999999999999999988865 44444
No 132
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.1e-37 Score=276.51 Aligned_cols=158 Identities=23% Similarity=0.405 Sum_probs=130.6
Q ss_pred cEEEEeEEEEeCCCCCCcceeeceEEEcCCcEEEEEcCCCChHHHHHHHHhcCcCCCccEEEEcCe--------EEEEec
Q psy1503 88 HVSLDNVTAQWSLQNADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSLGGT--------VSYASQ 159 (265)
Q Consensus 88 ~i~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g~--------i~~v~Q 159 (265)
+++++|++++|+. .++++|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|. ++|++|
T Consensus 1 ml~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~v~q 77 (255)
T PRK11248 1 MLQISHLYADYGG---KPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLDGKPVEGPGAERGVVFQ 77 (255)
T ss_pred CEEEEEEEEEeCC---eeeEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCCcEEEEeC
Confidence 3789999999963 46899999999999999999999999999999999999999999999873 899999
Q ss_pred CCCCcc-ccHHHHHhcCCc---cc----HHHHHHHHHHhcchhHHhcCCCCCccccCCCCCCCCHHHHHHHHHHHHHccC
Q psy1503 160 EPWIFA-ATIRQNILFGLP---YL----RRRYADVIRVCALQDDFDSLPNGDFTVVGERGASLSGGQKARINLARAVYKN 231 (265)
Q Consensus 160 ~~~l~~-~ti~eni~~~~~---~~----~~~~~~~~~~~~l~~~i~~l~~g~~t~vg~~g~~LSgGqrqRialARal~~~ 231 (265)
++.+++ .|+.||+.++.. .. .+++.++++..++.+.. .....+||||||||++|||||+.+
T Consensus 78 ~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~-----------~~~~~~LSgGq~qrl~laral~~~ 146 (255)
T PRK11248 78 NEGLLPWRNVQDNVAFGLQLAGVEKMQRLEIAHQMLKKVGLEGAE-----------KRYIWQLSGGQRQRVGIARALAAN 146 (255)
T ss_pred CCccCCCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCChhHh-----------hCChhhCCHHHHHHHHHHHHHhcC
Confidence 999887 599999987521 11 12334445555544322 234578999999999999999999
Q ss_pred CCEEEEeCCCCCcCHHHHHHHHHHHHHHH
Q psy1503 232 ADIYLLDDPLSAVDMHVGKHLFEDCISGC 260 (265)
Q Consensus 232 ~~illLDEp~s~LD~~~~~~i~~~~i~~~ 260 (265)
|+++||||||++||+.+...+.+ .+..+
T Consensus 147 p~lllLDEPt~~LD~~~~~~l~~-~L~~~ 174 (255)
T PRK11248 147 PQLLLLDEPFGALDAFTREQMQT-LLLKL 174 (255)
T ss_pred CCEEEEeCCCccCCHHHHHHHHH-HHHHH
Confidence 99999999999999999988865 44444
No 133
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=100.00 E-value=1e-37 Score=274.83 Aligned_cols=162 Identities=27% Similarity=0.417 Sum_probs=131.6
Q ss_pred cEEEEeEEEEeCCCCCCcceeeceEEEcCCcEEEEEcCCCChHHHHHHHHhcCcCCC-----ccEEEEcCe---------
Q psy1503 88 HVSLDNVTAQWSLQNADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRIS-----SGKVSLGGT--------- 153 (265)
Q Consensus 88 ~i~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~-----~G~i~~~g~--------- 153 (265)
+++++|++++|+. ..+++|+||+|++|++++|+|+||||||||+++|+|+++|+ +|+|.++|.
T Consensus 1 ~l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~i~~~g~~~~~~~~~~ 77 (247)
T TIGR00972 1 AIEIENLNLFYGE---KEALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIYDKKIDV 77 (247)
T ss_pred CEEEEEEEEEECC---eeeecceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceEEEECCEEccccccch
Confidence 3789999999963 35899999999999999999999999999999999999998 999999762
Q ss_pred ------EEEEecCCCCccccHHHHHhcCCcc----c----HHHHHHHHHHhcchhHHhcCCCCCccccCCCCCCCCHHHH
Q psy1503 154 ------VSYASQEPWIFAATIRQNILFGLPY----L----RRRYADVIRVCALQDDFDSLPNGDFTVVGERGASLSGGQK 219 (265)
Q Consensus 154 ------i~~v~Q~~~l~~~ti~eni~~~~~~----~----~~~~~~~~~~~~l~~~i~~l~~g~~t~vg~~g~~LSgGqr 219 (265)
++|++|++++|+.|++||+.++... . .++..++++..++.+.+. ........+||||||
T Consensus 78 ~~~~~~i~~v~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LSgG~~ 150 (247)
T TIGR00972 78 VELRRRVGMVFQKPNPFPMSIYDNIAYGPRLHGIKDKKELDEIVEESLKKAALWDEVK-------DRLHDSALGLSGGQQ 150 (247)
T ss_pred HHHHhheEEEecCcccCCCCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCcchh-------hHhhCCcccCCHHHH
Confidence 8999999999999999999874211 1 122334444445542221 123455679999999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHH
Q psy1503 220 ARINLARAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGC 260 (265)
Q Consensus 220 qRialARal~~~~~illLDEp~s~LD~~~~~~i~~~~i~~~ 260 (265)
||++|||||+.+|+++||||||++||+.+...+++ ++..+
T Consensus 151 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~-~l~~~ 190 (247)
T TIGR00972 151 QRLCIARALAVEPEVLLLDEPTSALDPIATGKIEE-LIQEL 190 (247)
T ss_pred HHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHH-HHHHH
Confidence 99999999999999999999999999999988755 45444
No 134
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.1e-37 Score=281.01 Aligned_cols=162 Identities=22% Similarity=0.399 Sum_probs=131.7
Q ss_pred cEEEEeEEEEeCCCCC--CcceeeceEEEcCCcEEEEEcCCCChHHHHHHHHhcCcCCCccEEEEcCe------------
Q psy1503 88 HVSLDNVTAQWSLQNA--DLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSLGGT------------ 153 (265)
Q Consensus 88 ~i~~~~~~~~~~~~~~--~~~l~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g~------------ 153 (265)
+|+++|++|+|+.... .++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.
T Consensus 1 mi~~~~v~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~ 80 (288)
T PRK13643 1 MIKFEKVNYTYQPNSPFASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSSTSKQKEIK 80 (288)
T ss_pred CEEEEEEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEECccccccccHH
Confidence 4789999999963211 35899999999999999999999999999999999999999999999872
Q ss_pred -----EEEEecCC--CCccccHHHHHhcCCc---cc----HHHHHHHHHHhcchhHHhcCCCCCccccCCCCCCCCHHHH
Q psy1503 154 -----VSYASQEP--WIFAATIRQNILFGLP---YL----RRRYADVIRVCALQDDFDSLPNGDFTVVGERGASLSGGQK 219 (265)
Q Consensus 154 -----i~~v~Q~~--~l~~~ti~eni~~~~~---~~----~~~~~~~~~~~~l~~~i~~l~~g~~t~vg~~g~~LSgGqr 219 (265)
++|++|+| .+|+.|+.||+.|+.. .. ..++.++++..++.+. .......+||||||
T Consensus 81 ~~~~~ig~v~q~~~~~l~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~----------~~~~~~~~LSgGqk 150 (288)
T PRK13643 81 PVRKKVGVVFQFPESQLFEETVLKDVAFGPQNFGIPKEKAEKIAAEKLEMVGLADE----------FWEKSPFELSGGQM 150 (288)
T ss_pred HHHhhEEEEecCcchhcccchHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCChh----------hccCCcccCCHHHH
Confidence 79999988 7888899999998642 11 1233444444444321 12345679999999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHH
Q psy1503 220 ARINLARAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGC 260 (265)
Q Consensus 220 qRialARal~~~~~illLDEp~s~LD~~~~~~i~~~~i~~~ 260 (265)
||++|||||+.+|+++||||||++||+.+...+++ .+..+
T Consensus 151 qrvaiA~aL~~~p~illLDEPt~gLD~~~~~~l~~-~l~~l 190 (288)
T PRK13643 151 RRVAIAGILAMEPEVLVLDEPTAGLDPKARIEMMQ-LFESI 190 (288)
T ss_pred HHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHH-HHHHH
Confidence 99999999999999999999999999999988865 44443
No 135
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.1e-37 Score=275.43 Aligned_cols=163 Identities=27% Similarity=0.409 Sum_probs=132.2
Q ss_pred CcEEEEeEEEEeCCCCCCcceeeceEEEcCCcEEEEEcCCCChHHHHHHHHhcCcC-----CCccEEEEcC---------
Q psy1503 87 GHVSLDNVTAQWSLQNADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELR-----ISSGKVSLGG--------- 152 (265)
Q Consensus 87 ~~i~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~-----~~~G~i~~~g--------- 152 (265)
..|+++|++++|+. .++|+++||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|
T Consensus 5 ~~l~~~~l~~~~~~---~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~ 81 (253)
T PRK14242 5 PKMEARGLSFFYGD---FQALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYDPHVD 81 (253)
T ss_pred cEEEEeeeEEEECC---eeeecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEECCEEccccccC
Confidence 36999999999963 458999999999999999999999999999999999874 6899999877
Q ss_pred ------eEEEEecCCCCccccHHHHHhcCCc---c-c----HHHHHHHHHHhcchhHHhcCCCCCccccCCCCCCCCHHH
Q psy1503 153 ------TVSYASQEPWIFAATIRQNILFGLP---Y-L----RRRYADVIRVCALQDDFDSLPNGDFTVVGERGASLSGGQ 218 (265)
Q Consensus 153 ------~i~~v~Q~~~l~~~ti~eni~~~~~---~-~----~~~~~~~~~~~~l~~~i~~l~~g~~t~vg~~g~~LSgGq 218 (265)
.++|++|++.+|+.|++||+.++.. . . .+++.++++.+++.+.+. +.......+|||||
T Consensus 82 ~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LSgGq 154 (253)
T PRK14242 82 VVELRRRVGMVFQKPNPFPKSIFENVAYGLRVNGVKDKAYLAERVERSLRHAALWDEVK-------DRLHESALGLSGGQ 154 (253)
T ss_pred HHHHhhcEEEEecCCCCCcCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCchhhh-------HHhhCCcccCCHHH
Confidence 2899999999998899999987521 1 1 223344455555533221 12345678999999
Q ss_pred HHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHH
Q psy1503 219 KARINLARAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGC 260 (265)
Q Consensus 219 rqRialARal~~~~~illLDEp~s~LD~~~~~~i~~~~i~~~ 260 (265)
|||++|||||+.+|+++||||||++||+.+...+++ .+..+
T Consensus 155 ~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~-~l~~~ 195 (253)
T PRK14242 155 QQRLCIARALAVEPEVLLMDEPASALDPIATQKIEE-LIHEL 195 (253)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHH-HHHHH
Confidence 999999999999999999999999999999988855 44444
No 136
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=100.00 E-value=1.3e-37 Score=282.97 Aligned_cols=159 Identities=25% Similarity=0.401 Sum_probs=130.5
Q ss_pred CcEEEEeEEEEeCCCCCCcceeeceEEEcCCcEEEEEcCCCChHHHHHHHHhcCcCCCccEEEEcCe------------E
Q psy1503 87 GHVSLDNVTAQWSLQNADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSLGGT------------V 154 (265)
Q Consensus 87 ~~i~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g~------------i 154 (265)
..++++|++++|+. ..+|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|. +
T Consensus 6 ~~i~i~~l~k~~~~---~~~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~p~~G~v~i~G~~~~~~~~~~~~~i 82 (306)
T PRK13537 6 APIDFRNVEKRYGD---KLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSISLCGEPVPSRARHARQRV 82 (306)
T ss_pred ceEEEEeEEEEECC---eEEEecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEecccchHHHHhcE
Confidence 47999999999963 46999999999999999999999999999999999999999999999873 9
Q ss_pred EEEecCCCCcc-ccHHHHHhcCCc-c--cH----HHHHHHHHHhcchhHHhcCCCCCccccCCCCCCCCHHHHHHHHHHH
Q psy1503 155 SYASQEPWIFA-ATIRQNILFGLP-Y--LR----RRYADVIRVCALQDDFDSLPNGDFTVVGERGASLSGGQKARINLAR 226 (265)
Q Consensus 155 ~~v~Q~~~l~~-~ti~eni~~~~~-~--~~----~~~~~~~~~~~l~~~i~~l~~g~~t~vg~~g~~LSgGqrqRialAR 226 (265)
||+||++.+++ .|++||+.+... + .. ++..++++.+++.+. ......+||||||||++|||
T Consensus 83 g~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LS~G~~qrl~la~ 151 (306)
T PRK13537 83 GVVPQFDNLDPDFTVRENLLVFGRYFGLSAAAARALVPPLLEFAKLENK-----------ADAKVGELSGGMKRRLTLAR 151 (306)
T ss_pred EEEeccCcCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchH-----------hcCchhhCCHHHHHHHHHHH
Confidence 99999999986 699999985321 1 11 222333444433322 22344689999999999999
Q ss_pred HHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHH
Q psy1503 227 AVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGC 260 (265)
Q Consensus 227 al~~~~~illLDEp~s~LD~~~~~~i~~~~i~~~ 260 (265)
||+++|+++||||||++||+.++..+++ .+..+
T Consensus 152 aL~~~P~lllLDEPt~gLD~~~~~~l~~-~l~~l 184 (306)
T PRK13537 152 ALVNDPDVLVLDEPTTGLDPQARHLMWE-RLRSL 184 (306)
T ss_pred HHhCCCCEEEEeCCCcCCCHHHHHHHHH-HHHHH
Confidence 9999999999999999999999999866 45554
No 137
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.3e-37 Score=275.17 Aligned_cols=163 Identities=24% Similarity=0.357 Sum_probs=131.9
Q ss_pred CcEEEEeEEEEeCCCCCCcceeeceEEEcCCcEEEEEcCCCChHHHHHHHHhcCcCC-----CccEEEEcCe--------
Q psy1503 87 GHVSLDNVTAQWSLQNADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRI-----SSGKVSLGGT-------- 153 (265)
Q Consensus 87 ~~i~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~-----~~G~i~~~g~-------- 153 (265)
..++++|++++|+. .++++|+||+|++|++++|+||||||||||+++|+|+++| ++|+|.++|.
T Consensus 6 ~~l~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~ 82 (254)
T PRK14273 6 AIIETENLNLFYTD---FKALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYSNNFD 82 (254)
T ss_pred ceEEEeeeEEEeCC---ceeecceeeEEcCCCEEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEEECCEeccccccc
Confidence 47999999999963 4589999999999999999999999999999999999997 4899998762
Q ss_pred -------EEEEecCCCCccccHHHHHhcCCcc----c----HHHHHHHHHHhcchhHHhcCCCCCccccCCCCCCCCHHH
Q psy1503 154 -------VSYASQEPWIFAATIRQNILFGLPY----L----RRRYADVIRVCALQDDFDSLPNGDFTVVGERGASLSGGQ 218 (265)
Q Consensus 154 -------i~~v~Q~~~l~~~ti~eni~~~~~~----~----~~~~~~~~~~~~l~~~i~~l~~g~~t~vg~~g~~LSgGq 218 (265)
++|++|++.+|+.|++|||.++... . .++..++++.+++.+.+. ......+.+|||||
T Consensus 83 ~~~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~-------~~~~~~~~~LSgG~ 155 (254)
T PRK14273 83 ILELRRKIGMVFQTPNPFLMSIYDNISYGPKIHGTKDKKKLDEIVEQSLKKSALWNEVK-------DKLNTNALSLSGGQ 155 (254)
T ss_pred HHHHhhceEEEeeccccccCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCchhhH-------HHHhCCcccCCHHH
Confidence 8999999999989999999875321 1 122334444444422221 12234678999999
Q ss_pred HHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHH
Q psy1503 219 KARINLARAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGC 260 (265)
Q Consensus 219 rqRialARal~~~~~illLDEp~s~LD~~~~~~i~~~~i~~~ 260 (265)
|||++|||||+.+|+++||||||++||+.+...+++ .+..+
T Consensus 156 ~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~-~l~~~ 196 (254)
T PRK14273 156 QQRLCIARTLAIEPNVILMDEPTSALDPISTGKIEE-LIINL 196 (254)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHH-HHHHH
Confidence 999999999999999999999999999999998865 44444
No 138
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=1.5e-37 Score=266.54 Aligned_cols=158 Identities=27% Similarity=0.324 Sum_probs=132.9
Q ss_pred cEEEEeEEEEeCCCCCCcceeeceEEEcCCcEEEEEcCCCChHHHHHHHHhcCcCCCccEEEEcCe------------EE
Q psy1503 88 HVSLDNVTAQWSLQNADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSLGGT------------VS 155 (265)
Q Consensus 88 ~i~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g~------------i~ 155 (265)
+++++|++++|+. .++++|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|. ++
T Consensus 1 ~l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~v~~~g~~~~~~~~~~~~~~~ 77 (204)
T PRK13538 1 MLEARNLACERDE---RILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPDAGEVLWQGEPIRRQRDEYHQDLL 77 (204)
T ss_pred CeEEEEEEEEECC---EEEEecceEEECCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccchHHhhhheE
Confidence 3789999999963 46899999999999999999999999999999999999999999999873 89
Q ss_pred EEecCCCCcc-ccHHHHHhcCCc----ccHHHHHHHHHHhcchhHHhcCCCCCccccCCCCCCCCHHHHHHHHHHHHHcc
Q psy1503 156 YASQEPWIFA-ATIRQNILFGLP----YLRRRYADVIRVCALQDDFDSLPNGDFTVVGERGASLSGGQKARINLARAVYK 230 (265)
Q Consensus 156 ~v~Q~~~l~~-~ti~eni~~~~~----~~~~~~~~~~~~~~l~~~i~~l~~g~~t~vg~~g~~LSgGqrqRialARal~~ 230 (265)
|++|++.+++ .|+.||+.++.. ...+++.++++..++.+..+ .....||||||||++||||+++
T Consensus 78 ~~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~l~~~gl~~~~~-----------~~~~~LS~G~~qrl~la~al~~ 146 (204)
T PRK13538 78 YLGHQPGIKTELTALENLRFYQRLHGPGDDEALWEALAQVGLAGFED-----------VPVRQLSAGQQRRVALARLWLT 146 (204)
T ss_pred EeCCccccCcCCcHHHHHHHHHHhcCccHHHHHHHHHHHcCCHHHhh-----------CChhhcCHHHHHHHHHHHHHhc
Confidence 9999998886 599999987532 12345556666666654332 2356899999999999999999
Q ss_pred CCCEEEEeCCCCCcCHHHHHHHHHHHHHHH
Q psy1503 231 NADIYLLDDPLSAVDMHVGKHLFEDCISGC 260 (265)
Q Consensus 231 ~~~illLDEp~s~LD~~~~~~i~~~~i~~~ 260 (265)
+|+++||||||++||+.+.+.+.+ .+..+
T Consensus 147 ~p~llllDEPt~~LD~~~~~~l~~-~l~~~ 175 (204)
T PRK13538 147 RAPLWILDEPFTAIDKQGVARLEA-LLAQH 175 (204)
T ss_pred CCCEEEEeCCCccCCHHHHHHHHH-HHHHH
Confidence 999999999999999999998854 44443
No 139
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.1e-37 Score=280.81 Aligned_cols=162 Identities=22% Similarity=0.394 Sum_probs=130.4
Q ss_pred cEEEEeEEEEeCCCC--CCcceeeceEEEcCCcEEEEEcCCCChHHHHHHHHhcCcCCCccEEEEcCe------------
Q psy1503 88 HVSLDNVTAQWSLQN--ADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSLGGT------------ 153 (265)
Q Consensus 88 ~i~~~~~~~~~~~~~--~~~~l~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g~------------ 153 (265)
.++++|++++|+... ..++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~i~~~~~~~~~~ 81 (286)
T PRK13646 2 TIRFDNVSYTYQKGTPYEHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITITHKTKDKYIR 81 (286)
T ss_pred EEEEEEEEEEECCCCccccCceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHH
Confidence 378999999996321 136999999999999999999999999999999999999999999999872
Q ss_pred -----EEEEecCC--CCccccHHHHHhcCCc---ccH----HHHHHHHHHhcchhHHhcCCCCCccccCCCCCCCCHHHH
Q psy1503 154 -----VSYASQEP--WIFAATIRQNILFGLP---YLR----RRYADVIRVCALQDDFDSLPNGDFTVVGERGASLSGGQK 219 (265)
Q Consensus 154 -----i~~v~Q~~--~l~~~ti~eni~~~~~---~~~----~~~~~~~~~~~l~~~i~~l~~g~~t~vg~~g~~LSgGqr 219 (265)
|+|++|+| .+|+.|+.|||.++.. ... ++..++++.+++.. ......+.+||||||
T Consensus 82 ~~~~~ig~v~q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~----------~~~~~~~~~LSgGq~ 151 (286)
T PRK13646 82 PVRKRIGMVFQFPESQLFEDTVEREIIFGPKNFKMNLDEVKNYAHRLLMDLGFSR----------DVMSQSPFQMSGGQM 151 (286)
T ss_pred HHHhheEEEecChHhccchhhHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCCh----------hhhhCCcccCCHHHH
Confidence 79999997 5788899999998632 122 12223333333321 123355679999999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHH
Q psy1503 220 ARINLARAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGC 260 (265)
Q Consensus 220 qRialARal~~~~~illLDEp~s~LD~~~~~~i~~~~i~~~ 260 (265)
||++|||||+.+|+++||||||++||+.+...+.+ .+..+
T Consensus 152 qrv~laraL~~~p~illlDEPt~~LD~~~~~~l~~-~l~~l 191 (286)
T PRK13646 152 RKIAIVSILAMNPDIIVLDEPTAGLDPQSKRQVMR-LLKSL 191 (286)
T ss_pred HHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHH-HHHHH
Confidence 99999999999999999999999999999998855 44444
No 140
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.8e-37 Score=277.83 Aligned_cols=159 Identities=25% Similarity=0.358 Sum_probs=130.3
Q ss_pred cEEEEeEEEEeCCCCCCcceeeceEEEcCCcEEEEEcCCCChHHHHHHHHhcCcCCCccEEEEcCe--------------
Q psy1503 88 HVSLDNVTAQWSLQNADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSLGGT-------------- 153 (265)
Q Consensus 88 ~i~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g~-------------- 153 (265)
+++++|++++|+. ..++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.
T Consensus 1 ml~~~~l~~~~~~--~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~ 78 (274)
T PRK13644 1 MIRLENVSYSYPD--GTPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSGIDTGDFSKLQGIRKL 78 (274)
T ss_pred CEEEEEEEEEcCC--CCceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEECCccccHHHHHhh
Confidence 3789999999953 245899999999999999999999999999999999999999999999872
Q ss_pred EEEEecCCC--CccccHHHHHhcCCcc---c----HHHHHHHHHHhcchhHHhcCCCCCccccCCCCCCCCHHHHHHHHH
Q psy1503 154 VSYASQEPW--IFAATIRQNILFGLPY---L----RRRYADVIRVCALQDDFDSLPNGDFTVVGERGASLSGGQKARINL 224 (265)
Q Consensus 154 i~~v~Q~~~--l~~~ti~eni~~~~~~---~----~~~~~~~~~~~~l~~~i~~l~~g~~t~vg~~g~~LSgGqrqRial 224 (265)
++|++|+|. +++.|+.||+.++... . .+++.++++.+++.... ...+..||||||||++|
T Consensus 79 i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~-----------~~~~~~LS~G~~qrv~l 147 (274)
T PRK13644 79 VGIVFQNPETQFVGRTVEEDLAFGPENLCLPPIEIRKRVDRALAEIGLEKYR-----------HRSPKTLSGGQGQCVAL 147 (274)
T ss_pred eEEEEEChhhhcccchHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHh-----------cCCcccCCHHHHHHHHH
Confidence 899999986 4567999999875321 1 22334445555554333 34457899999999999
Q ss_pred HHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHH
Q psy1503 225 ARAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGC 260 (265)
Q Consensus 225 ARal~~~~~illLDEp~s~LD~~~~~~i~~~~i~~~ 260 (265)
||||+.+|+++||||||++||+.+...+++. +..+
T Consensus 148 aral~~~p~lllLDEPt~gLD~~~~~~l~~~-l~~l 182 (274)
T PRK13644 148 AGILTMEPECLIFDEVTSMLDPDSGIAVLER-IKKL 182 (274)
T ss_pred HHHHHcCCCEEEEeCCcccCCHHHHHHHHHH-HHHH
Confidence 9999999999999999999999999888664 4443
No 141
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2e-37 Score=275.18 Aligned_cols=164 Identities=27% Similarity=0.411 Sum_probs=133.2
Q ss_pred CCcEEEEeEEEEeCCCCCCcceeeceEEEcCCcEEEEEcCCCChHHHHHHHHhcCcC-----CCccEEEEcC--------
Q psy1503 86 KGHVSLDNVTAQWSLQNADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELR-----ISSGKVSLGG-------- 152 (265)
Q Consensus 86 ~~~i~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~-----~~~G~i~~~g-------- 152 (265)
.+.++++|++++|+. .++|+|+||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|
T Consensus 11 ~~~l~~~~l~~~~~~---~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~~~g~~~~~~~~ 87 (260)
T PRK10744 11 PSKIQVRNLNFYYGK---FHALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENILTPKQ 87 (260)
T ss_pred CceEEEEEEEEEeCC---eEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEEECCEEcccccc
Confidence 357999999999963 468999999999999999999999999999999999986 5899999976
Q ss_pred -------eEEEEecCCCCccccHHHHHhcCCc----cc----HHHHHHHHHHhcchhHHhcCCCCCccccCCCCCCCCHH
Q psy1503 153 -------TVSYASQEPWIFAATIRQNILFGLP----YL----RRRYADVIRVCALQDDFDSLPNGDFTVVGERGASLSGG 217 (265)
Q Consensus 153 -------~i~~v~Q~~~l~~~ti~eni~~~~~----~~----~~~~~~~~~~~~l~~~i~~l~~g~~t~vg~~g~~LSgG 217 (265)
.++|++|++.+|+.|++||+.++.. .. .++..++++..++...+. ........+||||
T Consensus 88 ~~~~~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LS~G 160 (260)
T PRK10744 88 DIALLRAKVGMVFQKPTPFPMSIYDNIAFGVRLFEKLSRAEMDERVEWALTKAALWNEVK-------DKLHQSGYSLSGG 160 (260)
T ss_pred chHHHhcceEEEecCCccCcCcHHHHHhhhHhhcCCCCHHHHHHHHHHHHHHcCCChhhH-------HHHhcCCCCCCHH
Confidence 2899999999999999999987532 11 123344455555432221 2344567899999
Q ss_pred HHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHH
Q psy1503 218 QKARINLARAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGC 260 (265)
Q Consensus 218 qrqRialARal~~~~~illLDEp~s~LD~~~~~~i~~~~i~~~ 260 (265)
||||++|||||+.+|+++||||||++||+.+...+++ .+..+
T Consensus 161 q~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~-~L~~~ 202 (260)
T PRK10744 161 QQQRLCIARGIAIRPEVLLLDEPCSALDPISTGRIEE-LITEL 202 (260)
T ss_pred HHHHHHHHHHHHCCCCEEEEcCCCccCCHHHHHHHHH-HHHHH
Confidence 9999999999999999999999999999999988765 44443
No 142
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=100.00 E-value=2.1e-37 Score=264.35 Aligned_cols=157 Identities=27% Similarity=0.362 Sum_probs=130.2
Q ss_pred EEEEeEEEEeCCCCCCcceeeceEEEcCCcEEEEEcCCCChHHHHHHHHhcCcCCCccEEEEcCe------------EEE
Q psy1503 89 VSLDNVTAQWSLQNADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSLGGT------------VSY 156 (265)
Q Consensus 89 i~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g~------------i~~ 156 (265)
++++|++++|+. .++++++||+|++|++++|+||||||||||+++|+|+++|++|+|.++|. ++|
T Consensus 1 l~~~~l~~~~~~---~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~ 77 (198)
T TIGR01189 1 LAARNLACSRGE---RMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGTALAEQRDEPHRNILY 77 (198)
T ss_pred CEEEEEEEEECC---EEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccchHHhhhheEE
Confidence 468999999963 46899999999999999999999999999999999999999999999883 799
Q ss_pred EecCCCCcc-ccHHHHHhcCCcc---cHHHHHHHHHHhcchhHHhcCCCCCccccCCCCCCCCHHHHHHHHHHHHHccCC
Q psy1503 157 ASQEPWIFA-ATIRQNILFGLPY---LRRRYADVIRVCALQDDFDSLPNGDFTVVGERGASLSGGQKARINLARAVYKNA 232 (265)
Q Consensus 157 v~Q~~~l~~-~ti~eni~~~~~~---~~~~~~~~~~~~~l~~~i~~l~~g~~t~vg~~g~~LSgGqrqRialARal~~~~ 232 (265)
++|++.+++ .|++||+.+.... ...++.++++..++.+.++ ....+||||||||++||||++++|
T Consensus 78 ~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~qrv~la~al~~~p 146 (198)
T TIGR01189 78 LGHLPGLKPELSALENLHFWAAIHGGAQRTIEDALAAVGLTGFED-----------LPAAQLSAGQQRRLALARLWLSRA 146 (198)
T ss_pred eccCcccccCCcHHHHHHHHHHHcCCcHHHHHHHHHHcCCHHHhc-----------CChhhcCHHHHHHHHHHHHHhcCC
Confidence 999998886 6999999764321 1223455566666654332 344689999999999999999999
Q ss_pred CEEEEeCCCCCcCHHHHHHHHHHHHHHH
Q psy1503 233 DIYLLDDPLSAVDMHVGKHLFEDCISGC 260 (265)
Q Consensus 233 ~illLDEp~s~LD~~~~~~i~~~~i~~~ 260 (265)
+++||||||++||+.+.+.+.+ .+..+
T Consensus 147 ~llllDEPt~~LD~~~~~~l~~-~l~~~ 173 (198)
T TIGR01189 147 PLWILDEPTTALDKAGVALLAG-LLRAH 173 (198)
T ss_pred CEEEEeCCCcCCCHHHHHHHHH-HHHHH
Confidence 9999999999999999887744 55444
No 143
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=2.8e-37 Score=264.11 Aligned_cols=157 Identities=24% Similarity=0.343 Sum_probs=128.7
Q ss_pred EEEEeEEEEeCCCCCCcceeeceEEEcCCcEEEEEcCCCChHHHHHHHHhcCcCCCccEEEEcCe------------EEE
Q psy1503 89 VSLDNVTAQWSLQNADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSLGGT------------VSY 156 (265)
Q Consensus 89 i~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g~------------i~~ 156 (265)
++++|++++|++ .++++++||+|++|++++|+||||||||||+++|+|+++|++|+|.++|. ++|
T Consensus 2 l~~~~l~~~~~~---~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~i~~ 78 (200)
T PRK13540 2 LDVIELDFDYHD---QPLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKGEILFERQSIKKDLCTYQKQLCF 78 (200)
T ss_pred EEEEEEEEEeCC---eeEEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeeEEECCCccccCHHHHHhheEE
Confidence 789999999963 46999999999999999999999999999999999999999999999872 899
Q ss_pred EecCCCCcc-ccHHHHHhcCCcc--cHHHHHHHHHHhcchhHHhcCCCCCccccCCCCCCCCHHHHHHHHHHHHHccCCC
Q psy1503 157 ASQEPWIFA-ATIRQNILFGLPY--LRRRYADVIRVCALQDDFDSLPNGDFTVVGERGASLSGGQKARINLARAVYKNAD 233 (265)
Q Consensus 157 v~Q~~~l~~-~ti~eni~~~~~~--~~~~~~~~~~~~~l~~~i~~l~~g~~t~vg~~g~~LSgGqrqRialARal~~~~~ 233 (265)
++|++.+++ .|++||+.++... ...+..++++..++.+. ......+||||||||++||||++++|+
T Consensus 79 ~~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LS~G~~~rv~laral~~~p~ 147 (200)
T PRK13540 79 VGHRSGINPYLTLRENCLYDIHFSPGAVGITELCRLFSLEHL-----------IDYPCGLLSSGQKRQVALLRLWMSKAK 147 (200)
T ss_pred eccccccCcCCCHHHHHHHHHhcCcchHHHHHHHHHcCCchh-----------hhCChhhcCHHHHHHHHHHHHHhcCCC
Confidence 999998875 6999999875311 12233344444333221 223446899999999999999999999
Q ss_pred EEEEeCCCCCcCHHHHHHHHHHHHHHH
Q psy1503 234 IYLLDDPLSAVDMHVGKHLFEDCISGC 260 (265)
Q Consensus 234 illLDEp~s~LD~~~~~~i~~~~i~~~ 260 (265)
++||||||++||+.+...+.+ .+..+
T Consensus 148 ~lilDEP~~~LD~~~~~~l~~-~l~~~ 173 (200)
T PRK13540 148 LWLLDEPLVALDELSLLTIIT-KIQEH 173 (200)
T ss_pred EEEEeCCCcccCHHHHHHHHH-HHHHH
Confidence 999999999999999988855 44443
No 144
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.1e-37 Score=276.78 Aligned_cols=161 Identities=24% Similarity=0.420 Sum_probs=131.6
Q ss_pred CcEEEEeEEEEeCCCCCCcceeeceEEEcCCcEEEEEcCCCChHHHHHHHHhcCcCCCccEEEEcCe-------------
Q psy1503 87 GHVSLDNVTAQWSLQNADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSLGGT------------- 153 (265)
Q Consensus 87 ~~i~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g~------------- 153 (265)
.+++++|++++|+.. ..++++|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.
T Consensus 6 ~~l~~~nl~~~~~~~-~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~ 84 (271)
T PRK13632 6 VMIKVENVSFSYPNS-ENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEIKIDGITISKENLKEIRKK 84 (271)
T ss_pred eEEEEEeEEEEcCCC-CccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCcCCHHHHhcc
Confidence 469999999999632 356899999999999999999999999999999999999999999999872
Q ss_pred EEEEecCCC--CccccHHHHHhcCCc---ccHH----HHHHHHHHhcchhHHhcCCCCCccccCCCCCCCCHHHHHHHHH
Q psy1503 154 VSYASQEPW--IFAATIRQNILFGLP---YLRR----RYADVIRVCALQDDFDSLPNGDFTVVGERGASLSGGQKARINL 224 (265)
Q Consensus 154 i~~v~Q~~~--l~~~ti~eni~~~~~---~~~~----~~~~~~~~~~l~~~i~~l~~g~~t~vg~~g~~LSgGqrqRial 224 (265)
++|++|++. ++..|++||+.++.. ...+ +..++++..++.+.+. ....+||||||||++|
T Consensus 85 i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~qrl~l 153 (271)
T PRK13632 85 IGIIFQNPDNQFIGATVEDDIAFGLENKKVPPKKMKDIIDDLAKKVGMEDYLD-----------KEPQNLSGGQKQRVAI 153 (271)
T ss_pred eEEEEeCHHHhcCcccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCHHHhh-----------CCcccCCHHHHHHHHH
Confidence 899999984 446799999987531 1111 2344455555544333 3457999999999999
Q ss_pred HHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHH
Q psy1503 225 ARAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGC 260 (265)
Q Consensus 225 ARal~~~~~illLDEp~s~LD~~~~~~i~~~~i~~~ 260 (265)
||||+.+|+++||||||++||+.+.+.+++ .+..+
T Consensus 154 aral~~~p~lllLDEP~~gLD~~~~~~l~~-~l~~~ 188 (271)
T PRK13632 154 ASVLALNPEIIIFDESTSMLDPKGKREIKK-IMVDL 188 (271)
T ss_pred HHHHHcCCCEEEEeCCcccCCHHHHHHHHH-HHHHH
Confidence 999999999999999999999999988865 44444
No 145
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=100.00 E-value=1.8e-37 Score=271.56 Aligned_cols=158 Identities=22% Similarity=0.421 Sum_probs=129.2
Q ss_pred EEEEeEEEEeCCCCCCcceeeceEEEcCCcEEEEEcCCCChHHHHHHHHhcCcCCCccEEEEcCe------------EEE
Q psy1503 89 VSLDNVTAQWSLQNADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSLGGT------------VSY 156 (265)
Q Consensus 89 i~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g~------------i~~ 156 (265)
++++|++++|+. .++|+++||+|++|++++|+||||||||||+++|+|+++|++|+|.++|. ++|
T Consensus 2 l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~i~~~~~~~~~~i~~ 78 (236)
T TIGR03864 2 LEVAGLSFAYGA---RRALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLYVAQEGQISVAGHDLRRAPRAALARLGV 78 (236)
T ss_pred EEEEeeEEEECC---EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcccCChhhhhhEEE
Confidence 789999999963 46999999999999999999999999999999999999999999999873 899
Q ss_pred EecCCCCc-cccHHHHHhcCCc---ccH----HHHHHHHHHhcchhHHhcCCCCCccccCCCCCCCCHHHHHHHHHHHHH
Q psy1503 157 ASQEPWIF-AATIRQNILFGLP---YLR----RRYADVIRVCALQDDFDSLPNGDFTVVGERGASLSGGQKARINLARAV 228 (265)
Q Consensus 157 v~Q~~~l~-~~ti~eni~~~~~---~~~----~~~~~~~~~~~l~~~i~~l~~g~~t~vg~~g~~LSgGqrqRialARal 228 (265)
++|++.++ ..|++||+.++.. ... ++..+.++..++ .........+||||||||++|||||
T Consensus 79 ~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gl-----------~~~~~~~~~~LS~G~~qrl~laral 147 (236)
T TIGR03864 79 VFQQPTLDLDLSVRQNLRYHAALHGLSRAEARERIAALLARLGL-----------AERADDKVRELNGGHRRRVEIARAL 147 (236)
T ss_pred eCCCCCCcccCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCC-----------hhhhcCChhhCCHHHHHHHHHHHHH
Confidence 99999885 5799999986432 111 122223333333 2234556679999999999999999
Q ss_pred ccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHHh
Q psy1503 229 YKNADIYLLDDPLSAVDMHVGKHLFEDCISGCL 261 (265)
Q Consensus 229 ~~~~~illLDEp~s~LD~~~~~~i~~~~i~~~l 261 (265)
+.+|+++||||||++||+.+...+++ .+..+.
T Consensus 148 ~~~p~llllDEP~~~LD~~~~~~l~~-~l~~~~ 179 (236)
T TIGR03864 148 LHRPALLLLDEPTVGLDPASRAAIVA-HVRALC 179 (236)
T ss_pred hcCCCEEEEcCCccCCCHHHHHHHHH-HHHHHH
Confidence 99999999999999999999998865 444443
No 146
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=100.00 E-value=2.1e-37 Score=281.08 Aligned_cols=159 Identities=24% Similarity=0.374 Sum_probs=129.0
Q ss_pred CcEEEEeEEEEeCCCCCCcceeeceEEEcCCcEEEEEcCCCChHHHHHHHHhcCcCCCccEEEEcCe------------E
Q psy1503 87 GHVSLDNVTAQWSLQNADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSLGGT------------V 154 (265)
Q Consensus 87 ~~i~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g~------------i 154 (265)
..|+++|++++|+. ..+|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|. +
T Consensus 3 ~~i~~~~l~~~~~~---~~~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i 79 (303)
T TIGR01288 3 VAIDLVGVSKSYGD---KVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPDRGKITVLGEPVPSRARLARVAI 79 (303)
T ss_pred cEEEEEeEEEEeCC---eEEEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECcccHHHHhhcE
Confidence 36899999999963 46899999999999999999999999999999999999999999999872 8
Q ss_pred EEEecCCCCcc-ccHHHHHhcCC---cccH----HHHHHHHHHhcchhHHhcCCCCCccccCCCCCCCCHHHHHHHHHHH
Q psy1503 155 SYASQEPWIFA-ATIRQNILFGL---PYLR----RRYADVIRVCALQDDFDSLPNGDFTVVGERGASLSGGQKARINLAR 226 (265)
Q Consensus 155 ~~v~Q~~~l~~-~ti~eni~~~~---~~~~----~~~~~~~~~~~l~~~i~~l~~g~~t~vg~~g~~LSgGqrqRialAR 226 (265)
+|++|++.+++ .|++||+.+.. .... ++..++++.+++.+. ......+||||||||++|||
T Consensus 80 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~~-----------~~~~~~~LSgG~~qrv~la~ 148 (303)
T TIGR01288 80 GVVPQFDNLDPEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLESK-----------ADVRVALLSGGMKRRLTLAR 148 (303)
T ss_pred EEEeccccCCcCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhH-----------hcCchhhCCHHHHHHHHHHH
Confidence 99999999885 69999997421 1111 122233333333222 23445689999999999999
Q ss_pred HHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHH
Q psy1503 227 AVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGC 260 (265)
Q Consensus 227 al~~~~~illLDEp~s~LD~~~~~~i~~~~i~~~ 260 (265)
||+.+|+++||||||++||+.+...+++ .+..+
T Consensus 149 al~~~p~lllLDEPt~gLD~~~~~~l~~-~l~~~ 181 (303)
T TIGR01288 149 ALINDPQLLILDEPTTGLDPHARHLIWE-RLRSL 181 (303)
T ss_pred HHhcCCCEEEEeCCCcCCCHHHHHHHHH-HHHHH
Confidence 9999999999999999999999998865 44443
No 147
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.5e-37 Score=273.09 Aligned_cols=160 Identities=24% Similarity=0.424 Sum_probs=128.5
Q ss_pred EEEEeEEEEeCCCCCCcceeeceEEEcCCcEEEEEcCCCChHHHHHHHHhcCcCCCccEEEEcCe-------------EE
Q psy1503 89 VSLDNVTAQWSLQNADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSLGGT-------------VS 155 (265)
Q Consensus 89 i~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g~-------------i~ 155 (265)
++++|++++|++. .++|+++||+|++|++++|+||||||||||+++|+|+++|++|+|.++|. ++
T Consensus 1 l~~~~l~~~~~~~--~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 78 (242)
T cd03295 1 IEFENVTKRYGGG--KKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFIDGEDIREQDPVELRRKIG 78 (242)
T ss_pred CEEEEEEEEeCCc--ceEeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCeEcCcCChHHhhcceE
Confidence 4689999999631 45899999999999999999999999999999999999999999999873 89
Q ss_pred EEecCCCCcc-ccHHHHHhcCCcc---c----HHHHHHHHHHhcchhHHhcCCCCCccccCCCCCCCCHHHHHHHHHHHH
Q psy1503 156 YASQEPWIFA-ATIRQNILFGLPY---L----RRRYADVIRVCALQDDFDSLPNGDFTVVGERGASLSGGQKARINLARA 227 (265)
Q Consensus 156 ~v~Q~~~l~~-~ti~eni~~~~~~---~----~~~~~~~~~~~~l~~~i~~l~~g~~t~vg~~g~~LSgGqrqRialARa 227 (265)
|++|++.+|+ .|++||+.++... + .++..++++..++.. .......+.+||||||||++||||
T Consensus 79 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~l~~---------~~~~~~~~~~LS~G~~qrv~lara 149 (242)
T cd03295 79 YVIQQIGLFPHMTVEENIALVPKLLKWPKEKIRERADELLALVGLDP---------AEFADRYPHELSGGQQQRVGVARA 149 (242)
T ss_pred EEccCccccCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCc---------HHHHhcChhhCCHHHHHHHHHHHH
Confidence 9999999986 6999999875211 1 112233333333321 012345567999999999999999
Q ss_pred HccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHH
Q psy1503 228 VYKNADIYLLDDPLSAVDMHVGKHLFEDCISGC 260 (265)
Q Consensus 228 l~~~~~illLDEp~s~LD~~~~~~i~~~~i~~~ 260 (265)
|+.+|+++||||||++||+.+...+.+ .+..+
T Consensus 150 l~~~p~llllDEPt~~LD~~~~~~l~~-~L~~~ 181 (242)
T cd03295 150 LAADPPLLLMDEPFGALDPITRDQLQE-EFKRL 181 (242)
T ss_pred HhcCCCEEEecCCcccCCHHHHHHHHH-HHHHH
Confidence 999999999999999999999888755 44443
No 148
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=100.00 E-value=1.5e-37 Score=266.14 Aligned_cols=156 Identities=27% Similarity=0.464 Sum_probs=127.3
Q ss_pred EEeEEEEeCCCCCCcceeeceEEEcCCcEEEEEcCCCChHHHHHHHHhcCcCCCccEEEEcCe-----------------
Q psy1503 91 LDNVTAQWSLQNADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSLGGT----------------- 153 (265)
Q Consensus 91 ~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g~----------------- 153 (265)
++|+++.|+. +++++|+||++++|++++|+||||||||||+++|+|+++|++|+|.++|.
T Consensus 1 i~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ 77 (206)
T TIGR03608 1 LKNISKKFGD---KIILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFDSGQVYLNGKETPPLNSKKASKFRREK 77 (206)
T ss_pred CcceEEEECC---EEEEeceEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccchhhHHHHHHhC
Confidence 4689999963 46999999999999999999999999999999999999999999988762
Q ss_pred EEEEecCCCCcc-ccHHHHHhcCCcc---c----HHHHHHHHHHhcchhHHhcCCCCCccccCCCCCCCCHHHHHHHHHH
Q psy1503 154 VSYASQEPWIFA-ATIRQNILFGLPY---L----RRRYADVIRVCALQDDFDSLPNGDFTVVGERGASLSGGQKARINLA 225 (265)
Q Consensus 154 i~~v~Q~~~l~~-~ti~eni~~~~~~---~----~~~~~~~~~~~~l~~~i~~l~~g~~t~vg~~g~~LSgGqrqRialA 225 (265)
++|++|++.+|+ .|++||+.++... . .+++.++++..++.+. ......+||||||||++||
T Consensus 78 i~~~~q~~~~~~~~t~~e~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~lS~G~~qr~~la 146 (206)
T TIGR03608 78 LGYLFQNFALIENETVEENLDLGLKYKKLSKKEKREKKKEALEKVGLNLK-----------LKQKIYELSGGEQQRVALA 146 (206)
T ss_pred eeEEecchhhccCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCchhh-----------hcCChhhCCHHHHHHHHHH
Confidence 899999999987 6999999874211 1 2233444555544332 2344578999999999999
Q ss_pred HHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHHh
Q psy1503 226 RAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGCL 261 (265)
Q Consensus 226 Ral~~~~~illLDEp~s~LD~~~~~~i~~~~i~~~l 261 (265)
|||+++|+++||||||++||+.+.+.+++ .+..+.
T Consensus 147 ral~~~p~llllDEPt~~LD~~~~~~l~~-~l~~~~ 181 (206)
T TIGR03608 147 RAILKDPPLILADEPTGSLDPKNRDEVLD-LLLELN 181 (206)
T ss_pred HHHHcCCCEEEEeCCcCCCCHHHHHHHHH-HHHHHH
Confidence 99999999999999999999999988855 444443
No 149
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=100.00 E-value=1.5e-37 Score=280.84 Aligned_cols=161 Identities=27% Similarity=0.508 Sum_probs=135.6
Q ss_pred cEEEEeEEEEeCCCCCCcceeeceEEEcCCcEEEEEcCCCChHHHHHHHHhcCcCCCccEEEEcC------------eEE
Q psy1503 88 HVSLDNVTAQWSLQNADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSLGG------------TVS 155 (265)
Q Consensus 88 ~i~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g------------~i~ 155 (265)
.++++|++++|+. ...+|+||||+|++|+++|++||||||||||+++|+|++.|++|+|.++| ++|
T Consensus 4 ~i~~~~l~k~~~~--~~~~l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl~~p~~G~i~i~G~~~~~~~~~~~~~ig 81 (293)
T COG1131 4 VIEVRNLTKKYGG--DKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEILVLGYDVVKEPAKVRRRIG 81 (293)
T ss_pred eeeecceEEEeCC--CCEEEeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCceEEEEcCEeCccCHHHHHhheE
Confidence 5788999999963 25699999999999999999999999999999999999999999999998 299
Q ss_pred EEecCCCCcc-ccHHHHHhcCCc-------ccHHHHHHHHHHhcchhHHhcCCCCCccccCCCCCCCCHHHHHHHHHHHH
Q psy1503 156 YASQEPWIFA-ATIRQNILFGLP-------YLRRRYADVIRVCALQDDFDSLPNGDFTVVGERGASLSGGQKARINLARA 227 (265)
Q Consensus 156 ~v~Q~~~l~~-~ti~eni~~~~~-------~~~~~~~~~~~~~~l~~~i~~l~~g~~t~vg~~g~~LSgGqrqRialARa 227 (265)
|+||+|.+++ .|++||+.|... ...+++.++++..+|.+.- ..+...||+|||||++||+|
T Consensus 82 y~~~~~~~~~~lT~~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~-----------~~~~~~lS~G~kqrl~ia~a 150 (293)
T COG1131 82 YVPQEPSLYPELTVRENLEFFARLYGLSKEEAEERIEELLELFGLEDKA-----------NKKVRTLSGGMKQRLSIALA 150 (293)
T ss_pred EEccCCCCCccccHHHHHHHHHHHhCCChhHHHHHHHHHHHHcCCchhh-----------CcchhhcCHHHHHHHHHHHH
Confidence 9999999886 599999987421 1234566667766665421 23457899999999999999
Q ss_pred HccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHHhh
Q psy1503 228 VYKNADIYLLDDPLSAVDMHVGKHLFEDCISGCLT 262 (265)
Q Consensus 228 l~~~~~illLDEp~s~LD~~~~~~i~~~~i~~~l~ 262 (265)
|+++|+++||||||+|||+.++..+++ .+..+.+
T Consensus 151 L~~~P~lliLDEPt~GLDp~~~~~~~~-~l~~l~~ 184 (293)
T COG1131 151 LLHDPELLILDEPTSGLDPESRREIWE-LLRELAK 184 (293)
T ss_pred HhcCCCEEEECCCCcCCCHHHHHHHHH-HHHHHHh
Confidence 999999999999999999999999866 4444443
No 150
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=8.6e-38 Score=267.61 Aligned_cols=164 Identities=26% Similarity=0.482 Sum_probs=135.0
Q ss_pred cEEEEeEEEEeCCCCCCcceeeceEEEcCCcEEEEEcCCCChHHHHHHHHhcCcCCCccEEEEcCe--------------
Q psy1503 88 HVSLDNVTAQWSLQNADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSLGGT-------------- 153 (265)
Q Consensus 88 ~i~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g~-------------- 153 (265)
+++++|++..|+. ..+|++|||++++||+++++|+||+|||||+++|+|+.+|.+|+|.++|.
T Consensus 3 mL~v~~l~~~YG~---~~~L~gvsl~v~~Geiv~llG~NGaGKTTlLkti~Gl~~~~~G~I~~~G~dit~~p~~~r~r~G 79 (237)
T COG0410 3 MLEVENLSAGYGK---IQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFDGEDITGLPPHERARLG 79 (237)
T ss_pred ceeEEeEeecccc---eeEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEECCeecCCCCHHHHHhCC
Confidence 6899999999964 46999999999999999999999999999999999999999999999994
Q ss_pred EEEEecCCCCcc-ccHHHHHhcCCcccHH-HHHHHHHHhcchhHHhcCCCCCccccCCCCCCCCHHHHHHHHHHHHHccC
Q psy1503 154 VSYASQEPWIFA-ATIRQNILFGLPYLRR-RYADVIRVCALQDDFDSLPNGDFTVVGERGASLSGGQKARINLARAVYKN 231 (265)
Q Consensus 154 i~~v~Q~~~l~~-~ti~eni~~~~~~~~~-~~~~~~~~~~l~~~i~~l~~g~~t~vg~~g~~LSgGqrqRialARal~~~ 231 (265)
|+||||...+|+ .||.||+.+|...... ...+ ..++..++.+| -+......++.+|||||||.+||||||+.+
T Consensus 80 i~~VPegR~iF~~LTVeENL~~g~~~~~~~~~~~----~~~e~v~~lFP-~Lker~~~~aG~LSGGEQQMLAiaRALm~~ 154 (237)
T COG0410 80 IAYVPEGRRIFPRLTVEENLLLGAYARRDKEAQE----RDLEEVYELFP-RLKERRNQRAGTLSGGEQQMLAIARALMSR 154 (237)
T ss_pred eEeCcccccchhhCcHHHHHhhhhhccccccccc----ccHHHHHHHCh-hHHHHhcCcccCCChHHHHHHHHHHHHhcC
Confidence 999999999997 5999999987432111 1111 01222333444 223345678899999999999999999999
Q ss_pred CCEEEEeCCCCCcCHHHHHHHHHHHHHHH
Q psy1503 232 ADIYLLDDPLSAVDMHVGKHLFEDCISGC 260 (265)
Q Consensus 232 ~~illLDEp~s~LD~~~~~~i~~~~i~~~ 260 (265)
|++++|||||.+|-|...++|++ .|..+
T Consensus 155 PklLLLDEPs~GLaP~iv~~I~~-~i~~l 182 (237)
T COG0410 155 PKLLLLDEPSEGLAPKIVEEIFE-AIKEL 182 (237)
T ss_pred CCEEEecCCccCcCHHHHHHHHH-HHHHH
Confidence 99999999999999999999987 34443
No 151
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3e-37 Score=275.55 Aligned_cols=164 Identities=27% Similarity=0.373 Sum_probs=132.9
Q ss_pred CCcEEEEeEEEEeCCCCCCcceeeceEEEcCCcEEEEEcCCCChHHHHHHHHhcCcC-----CCccEEEEcC--------
Q psy1503 86 KGHVSLDNVTAQWSLQNADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELR-----ISSGKVSLGG-------- 152 (265)
Q Consensus 86 ~~~i~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~-----~~~G~i~~~g-------- 152 (265)
...++++|++++|+. ..+|+|+||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|
T Consensus 11 ~~~l~i~nl~~~~~~---~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~~~g~~i~~~~~ 87 (269)
T PRK14259 11 NIIISLQNVTISYGT---FEAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDLYDPRV 87 (269)
T ss_pred CceEEEEeEEEEECC---EEEEcceEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccC
Confidence 357999999999963 468999999999999999999999999999999999987 6899999876
Q ss_pred -------eEEEEecCCCCccccHHHHHhcCCcc---c---HHHHHHHHHHhcchhHHhcCCCCCccccCCCCCCCCHHHH
Q psy1503 153 -------TVSYASQEPWIFAATIRQNILFGLPY---L---RRRYADVIRVCALQDDFDSLPNGDFTVVGERGASLSGGQK 219 (265)
Q Consensus 153 -------~i~~v~Q~~~l~~~ti~eni~~~~~~---~---~~~~~~~~~~~~l~~~i~~l~~g~~t~vg~~g~~LSgGqr 219 (265)
.++|++|++.+|+.|++||+.++... . .++..++++.+++...+ .+.......+||||||
T Consensus 88 ~~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l-------~~~~~~~~~~LS~G~~ 160 (269)
T PRK14259 88 DPVEVRRRIGMVFQQPNPFPKSIYENIAFGARINGYTGDMDELVERSLRKAAVWDEC-------KDKLNESGYSLSGGQQ 160 (269)
T ss_pred CHHHHhhceEEEccCCccchhhHHHHHhhhhhhcCCcHHHHHHHHHHHHHhCCcchh-------hhhhCCCcccCCHHHH
Confidence 28999999999988999999876421 1 12233344444432211 1234456789999999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHH
Q psy1503 220 ARINLARAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGC 260 (265)
Q Consensus 220 qRialARal~~~~~illLDEp~s~LD~~~~~~i~~~~i~~~ 260 (265)
||++|||||+.+|+++||||||++||+.+...+++ .+..+
T Consensus 161 qrl~laral~~~p~lllLDEPt~gLD~~~~~~l~~-~l~~~ 200 (269)
T PRK14259 161 QRLCIARTIAIEPEVILMDEPCSALDPISTLKIEE-TMHEL 200 (269)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHH-HHHHH
Confidence 99999999999999999999999999999988865 44444
No 152
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=100.00 E-value=2.3e-37 Score=260.06 Aligned_cols=129 Identities=31% Similarity=0.612 Sum_probs=118.0
Q ss_pred EEEEeEEEEeCCCCCCcceeeceEEEcCCcEEEEEcCCCChHHHHHHHHhcCcCCCccEEEEcCe------------EEE
Q psy1503 89 VSLDNVTAQWSLQNADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSLGGT------------VSY 156 (265)
Q Consensus 89 i~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g~------------i~~ 156 (265)
++++|++++|+.. ..++++|+||++++|++++|+||||||||||+++|+|+++|++|+|.++|. ++|
T Consensus 1 i~~~~~~~~~~~~-~~~~l~~i~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~ 79 (178)
T cd03247 1 LSINNVSFSYPEQ-EQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGVPVSDLEKALSSLISV 79 (178)
T ss_pred CEEEEEEEEeCCC-CccceEEEEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCEEHHHHHHHHHhhEEE
Confidence 4689999999642 236999999999999999999999999999999999999999999999983 899
Q ss_pred EecCCCCccccHHHHHhcCCcccHHHHHHHHHHhcchhHHhcCCCCCccccCCCCCCCCHHHHHHHHHHHHHccCCCEEE
Q psy1503 157 ASQEPWIFAATIRQNILFGLPYLRRRYADVIRVCALQDDFDSLPNGDFTVVGERGASLSGGQKARINLARAVYKNADIYL 236 (265)
Q Consensus 157 v~Q~~~l~~~ti~eni~~~~~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~vg~~g~~LSgGqrqRialARal~~~~~ill 236 (265)
++|++++++.|++||+ ..+||||||||++||||++.+|+++|
T Consensus 80 ~~q~~~~~~~tv~~~i--------------------------------------~~~LS~G~~qrv~laral~~~p~~ll 121 (178)
T cd03247 80 LNQRPYLFDTTLRNNL--------------------------------------GRRFSGGERQRLALARILLQDAPIVL 121 (178)
T ss_pred EccCCeeecccHHHhh--------------------------------------cccCCHHHHHHHHHHHHHhcCCCEEE
Confidence 9999999999999997 35899999999999999999999999
Q ss_pred EeCCCCCcCHHHHHHHHHHH
Q psy1503 237 LDDPLSAVDMHVGKHLFEDC 256 (265)
Q Consensus 237 LDEp~s~LD~~~~~~i~~~~ 256 (265)
|||||++||+.+.+.+++..
T Consensus 122 lDEP~~~LD~~~~~~l~~~l 141 (178)
T cd03247 122 LDEPTVGLDPITERQLLSLI 141 (178)
T ss_pred EECCcccCCHHHHHHHHHHH
Confidence 99999999999988876533
No 153
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3e-37 Score=272.83 Aligned_cols=165 Identities=22% Similarity=0.364 Sum_probs=130.2
Q ss_pred CcEEEEeEEEEeCCCCCCcceeeceEEEcCCcEEEEEcCCCChHHHHHHHHhcCcCCCccEEEEcCe-------------
Q psy1503 87 GHVSLDNVTAQWSLQNADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSLGGT------------- 153 (265)
Q Consensus 87 ~~i~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g~------------- 153 (265)
..++++|++++|+. .++|+++||++++|++++|+||||||||||+++|+|+++|++|+|.++|.
T Consensus 4 ~~l~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~ 80 (255)
T PRK11300 4 PLLSVSGLMMRFGG---LLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQHIEGLPGHQIARM 80 (255)
T ss_pred ceEEEeeEEEEECC---EEEEEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCcceEEECCEECCCCCHHHHHhc
Confidence 36899999999953 46999999999999999999999999999999999999999999999873
Q ss_pred -EEEEecCCCCccc-cHHHHHhcCCcc----------------cHHHHHHHHHHhcchhHHhcCCCCCccccCCCCCCCC
Q psy1503 154 -VSYASQEPWIFAA-TIRQNILFGLPY----------------LRRRYADVIRVCALQDDFDSLPNGDFTVVGERGASLS 215 (265)
Q Consensus 154 -i~~v~Q~~~l~~~-ti~eni~~~~~~----------------~~~~~~~~~~~~~l~~~i~~l~~g~~t~vg~~g~~LS 215 (265)
++|++|++.+|+. |++||+.++... .... .+.. ......++.+ |.......+..+||
T Consensus 81 ~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~--~~~~~~l~~~--gl~~~~~~~~~~LS 155 (255)
T PRK11300 81 GVVRTFQHVRLFREMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAE-SEAL--DRAATWLERV--GLLEHANRQAGNLA 155 (255)
T ss_pred CeEEeccCcccCCCCcHHHHHHHhhhccccchhhhhhccccccccch-hHHH--HHHHHHHHhC--ChhhhhhCChhhCC
Confidence 7899999999975 999999875210 0000 0000 0011122222 23334456678999
Q ss_pred HHHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHH
Q psy1503 216 GGQKARINLARAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGC 260 (265)
Q Consensus 216 gGqrqRialARal~~~~~illLDEp~s~LD~~~~~~i~~~~i~~~ 260 (265)
||||||++||||++.+|+++||||||++||+.+...+.+ .+..+
T Consensus 156 ~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~-~L~~~ 199 (255)
T PRK11300 156 YGQQRRLEIARCMVTQPEILMLDEPAAGLNPKETKELDE-LIAEL 199 (255)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHH-HHHHH
Confidence 999999999999999999999999999999999988855 44444
No 154
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=9.5e-38 Score=278.79 Aligned_cols=156 Identities=28% Similarity=0.414 Sum_probs=128.2
Q ss_pred EEEeEEEEeCCCCCCcceeeceEEEcCCcEEEEEcCCCChHHHHHHHHhcCcCCCccEEEEcC-----------------
Q psy1503 90 SLDNVTAQWSLQNADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSLGG----------------- 152 (265)
Q Consensus 90 ~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g----------------- 152 (265)
.++|+++.|+. .++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|
T Consensus 26 ~~~~~~~~~~~---~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~~ 102 (269)
T cd03294 26 SKEEILKKTGQ---TVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAMSRKELRELRRK 102 (269)
T ss_pred hhhhhhhhcCC---ceEeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccChhhhhhhhcC
Confidence 45678888753 4689999999999999999999999999999999999999999999976
Q ss_pred eEEEEecCCCCcc-ccHHHHHhcCCc---cc----HHHHHHHHHHhcchhHHhcCCCCCccccCCCCCCCCHHHHHHHHH
Q psy1503 153 TVSYASQEPWIFA-ATIRQNILFGLP---YL----RRRYADVIRVCALQDDFDSLPNGDFTVVGERGASLSGGQKARINL 224 (265)
Q Consensus 153 ~i~~v~Q~~~l~~-~ti~eni~~~~~---~~----~~~~~~~~~~~~l~~~i~~l~~g~~t~vg~~g~~LSgGqrqRial 224 (265)
.++|++|++.+|+ .|++||+.++.. .. .+++.++++.+++.+.+.. ...+||||||||++|
T Consensus 103 ~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LS~Gq~qrv~l 171 (269)
T cd03294 103 KISMVFQSFALLPHRTVLENVAFGLEVQGVPRAEREERAAEALELVGLEGWEHK-----------YPDELSGGMQQRVGL 171 (269)
T ss_pred cEEEEecCcccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhC-----------CcccCCHHHHHHHHH
Confidence 2899999999985 699999987421 11 2334455666666544443 345899999999999
Q ss_pred HHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHH
Q psy1503 225 ARAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGC 260 (265)
Q Consensus 225 ARal~~~~~illLDEp~s~LD~~~~~~i~~~~i~~~ 260 (265)
||||+.+|+++||||||++||+.+.+.+++ .+..+
T Consensus 172 Aral~~~p~illLDEPt~~LD~~~~~~l~~-~l~~~ 206 (269)
T cd03294 172 ARALAVDPDILLMDEAFSALDPLIRREMQD-ELLRL 206 (269)
T ss_pred HHHHhcCCCEEEEcCCCccCCHHHHHHHHH-HHHHH
Confidence 999999999999999999999999988865 44444
No 155
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.8e-37 Score=280.58 Aligned_cols=157 Identities=25% Similarity=0.389 Sum_probs=128.4
Q ss_pred cEEEEeEEEEeCCCC--CCcceeeceEEEcCCcEEEEEcCCCChHHHHHHHHhcCcCCCccEEEEcC-------------
Q psy1503 88 HVSLDNVTAQWSLQN--ADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSLGG------------- 152 (265)
Q Consensus 88 ~i~~~~~~~~~~~~~--~~~~l~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g------------- 152 (265)
.|+++|++++|+... ..++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|
T Consensus 2 ~i~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 81 (305)
T PRK13651 2 QIKVKNIVKIFNKKLPTELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTGTIEWIFKDEKNKKKTKEKE 81 (305)
T ss_pred EEEEEEEEEEECCCCCccccceeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEEeceeccccccccccc
Confidence 388999999996421 13589999999999999999999999999999999999999999998853
Q ss_pred ------------------------eEEEEecCC--CCccccHHHHHhcCCc---cc----HHHHHHHHHHhcchhHHhcC
Q psy1503 153 ------------------------TVSYASQEP--WIFAATIRQNILFGLP---YL----RRRYADVIRVCALQDDFDSL 199 (265)
Q Consensus 153 ------------------------~i~~v~Q~~--~l~~~ti~eni~~~~~---~~----~~~~~~~~~~~~l~~~i~~l 199 (265)
.+||++|+| .+|..|++|||.|+.. .. .++..++++.+++...
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~---- 157 (305)
T PRK13651 82 KVLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLFEQTIEKDIIFGPVSMGVSKEEAKKRAAKYIELVGLDES---- 157 (305)
T ss_pred ccccccccccccccccchHHHHHhceEEEeeCcccccccccHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChh----
Confidence 279999986 5778899999998642 11 1233445555555311
Q ss_pred CCCCccccCCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHH
Q psy1503 200 PNGDFTVVGERGASLSGGQKARINLARAVYKNADIYLLDDPLSAVDMHVGKHLFE 254 (265)
Q Consensus 200 ~~g~~t~vg~~g~~LSgGqrqRialARal~~~~~illLDEp~s~LD~~~~~~i~~ 254 (265)
.......+||||||||++|||||+.+|+++||||||++||+.+...+++
T Consensus 158 ------~~~~~~~~LSgGqkqrvalA~aL~~~P~lLlLDEPt~~LD~~~~~~l~~ 206 (305)
T PRK13651 158 ------YLQRSPFELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILE 206 (305)
T ss_pred ------hhhCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHH
Confidence 1234567999999999999999999999999999999999999888765
No 156
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.8e-37 Score=272.57 Aligned_cols=158 Identities=24% Similarity=0.382 Sum_probs=130.6
Q ss_pred cEEEEeEEEEeCCCCCCcceeeceEEEcCCcEEEEEcCCCChHHHHHHHHhcCcCCCccEEEEcCe-------------E
Q psy1503 88 HVSLDNVTAQWSLQNADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSLGGT-------------V 154 (265)
Q Consensus 88 ~i~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g~-------------i 154 (265)
+++++|++++|+. .++|+++||++++|++++|+|+||||||||+++|+|+++|++|+|.++|. +
T Consensus 2 ~l~~~~l~~~~~~---~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i 78 (255)
T PRK11231 2 TLRTENLTVGYGT---KRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPISMLSSRQLARRL 78 (255)
T ss_pred EEEEEeEEEEECC---EEEEeeeeeEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCcEEEECCEEhHHCCHHHHhhhe
Confidence 4789999999963 46999999999999999999999999999999999999999999999872 8
Q ss_pred EEEecCCCCccc-cHHHHHhcCCc-----c------cHHHHHHHHHHhcchhHHhcCCCCCccccCCCCCCCCHHHHHHH
Q psy1503 155 SYASQEPWIFAA-TIRQNILFGLP-----Y------LRRRYADVIRVCALQDDFDSLPNGDFTVVGERGASLSGGQKARI 222 (265)
Q Consensus 155 ~~v~Q~~~l~~~-ti~eni~~~~~-----~------~~~~~~~~~~~~~l~~~i~~l~~g~~t~vg~~g~~LSgGqrqRi 222 (265)
+|++|++.+++. |+.||+.++.. . ..++..++++.+++.... ......||||||||+
T Consensus 79 ~~~~q~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LS~G~~qrv 147 (255)
T PRK11231 79 ALLPQHHLTPEGITVRELVAYGRSPWLSLWGRLSAEDNARVNQAMEQTRINHLA-----------DRRLTDLSGGQRQRA 147 (255)
T ss_pred EEecccCCCCCCccHHHHHHhccchhhhhccCCCHHHHHHHHHHHHHcCCHHHH-----------cCCcccCCHHHHHHH
Confidence 999999988865 99999987521 0 112334444545554332 344578999999999
Q ss_pred HHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHH
Q psy1503 223 NLARAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGC 260 (265)
Q Consensus 223 alARal~~~~~illLDEp~s~LD~~~~~~i~~~~i~~~ 260 (265)
+||||++.+|+++||||||++||+.+...+.+ .+..+
T Consensus 148 ~laral~~~p~llllDEP~~~LD~~~~~~l~~-~l~~l 184 (255)
T PRK11231 148 FLAMVLAQDTPVVLLDEPTTYLDINHQVELMR-LMREL 184 (255)
T ss_pred HHHHHHhcCCCEEEEcCCcccCCHHHHHHHHH-HHHHH
Confidence 99999999999999999999999999988865 44443
No 157
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=100.00 E-value=1.1e-37 Score=288.90 Aligned_cols=143 Identities=22% Similarity=0.400 Sum_probs=121.8
Q ss_pred CcceeeceEEEcCCcEEEEEcCCCChHHHHHHHHhcCcCCCccEEEEcC-----------------eEEEEecCCCCcc-
Q psy1503 104 DLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSLGG-----------------TVSYASQEPWIFA- 165 (265)
Q Consensus 104 ~~~l~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g-----------------~i~~v~Q~~~l~~- 165 (265)
..+++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++| .++||+|++++|+
T Consensus 6 ~~~l~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~p~~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~~~l~~~ 85 (363)
T TIGR01186 6 KKGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQSPVELREVRRKKIGMVFQQFALFPH 85 (363)
T ss_pred ceeEEeeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHHhCcEEEEECCCcCCCC
Confidence 4589999999999999999999999999999999999999999999988 2899999999997
Q ss_pred ccHHHHHhcCCcc---c----HHHHHHHHHHhcchhHHhcCCCCCccccCCCCCCCCHHHHHHHHHHHHHccCCCEEEEe
Q psy1503 166 ATIRQNILFGLPY---L----RRRYADVIRVCALQDDFDSLPNGDFTVVGERGASLSGGQKARINLARAVYKNADIYLLD 238 (265)
Q Consensus 166 ~ti~eni~~~~~~---~----~~~~~~~~~~~~l~~~i~~l~~g~~t~vg~~g~~LSgGqrqRialARal~~~~~illLD 238 (265)
.|++|||.++... . .++..++++.+++... ....+.+|||||||||+|||||+.+|+|+|||
T Consensus 86 ~TV~eNi~~~~~~~~~~~~~~~~~~~~~l~~vgL~~~-----------~~~~p~~LSGGq~QRV~lARAL~~~p~iLLlD 154 (363)
T TIGR01186 86 MTILQNTSLGPELLGWPEQERKEKALELLKLVGLEEY-----------EHRYPDELSGGMQQRVGLARALAAEPDILLMD 154 (363)
T ss_pred CCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCchh-----------hhCChhhCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 5999999986432 1 1233444555555433 34455789999999999999999999999999
Q ss_pred CCCCCcCHHHHHHHHHHHH
Q psy1503 239 DPLSAVDMHVGKHLFEDCI 257 (265)
Q Consensus 239 Ep~s~LD~~~~~~i~~~~i 257 (265)
||||+||+.+++.+.+.+.
T Consensus 155 EP~saLD~~~r~~l~~~l~ 173 (363)
T TIGR01186 155 EAFSALDPLIRDSMQDELK 173 (363)
T ss_pred CCcccCCHHHHHHHHHHHH
Confidence 9999999999999977554
No 158
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4.4e-37 Score=273.79 Aligned_cols=159 Identities=26% Similarity=0.340 Sum_probs=131.8
Q ss_pred CcEEEEeEEEEeCCCCCCcceeeceEEEcCCcEEEEEcCCCChHHHHHHHHhcCcCCCccEEEEcCe-------------
Q psy1503 87 GHVSLDNVTAQWSLQNADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSLGGT------------- 153 (265)
Q Consensus 87 ~~i~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g~------------- 153 (265)
..++++|++++|++ +++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.
T Consensus 10 ~~l~i~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~ 86 (265)
T PRK10575 10 TTFALRNVSFRVPG---RTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPLESWSSKAFARK 86 (265)
T ss_pred ceEEEeeEEEEECC---EEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEehhhCCHHHHhhh
Confidence 46999999999963 46899999999999999999999999999999999999999999999882
Q ss_pred EEEEecCCCCcc-ccHHHHHhcCCc-----------ccHHHHHHHHHHhcchhHHhcCCCCCccccCCCCCCCCHHHHHH
Q psy1503 154 VSYASQEPWIFA-ATIRQNILFGLP-----------YLRRRYADVIRVCALQDDFDSLPNGDFTVVGERGASLSGGQKAR 221 (265)
Q Consensus 154 i~~v~Q~~~l~~-~ti~eni~~~~~-----------~~~~~~~~~~~~~~l~~~i~~l~~g~~t~vg~~g~~LSgGqrqR 221 (265)
++|++|++.+++ .|+.||+.++.. ...++..++++.+++.+.+.. ...+||||||||
T Consensus 87 i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LSgG~~qr 155 (265)
T PRK10575 87 VAYLPQQLPAAEGMTVRELVAIGRYPWHGALGRFGAADREKVEEAISLVGLKPLAHR-----------LVDSLSGGERQR 155 (265)
T ss_pred eEEeccCCCCCCCccHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcC-----------CcccCCHHHHHH
Confidence 899999987765 499999987521 012234455566666543333 345899999999
Q ss_pred HHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHH
Q psy1503 222 INLARAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGC 260 (265)
Q Consensus 222 ialARal~~~~~illLDEp~s~LD~~~~~~i~~~~i~~~ 260 (265)
++|||||+.+|+++||||||++||+.+.+.+.+ .+..+
T Consensus 156 v~laral~~~p~lllLDEPt~~LD~~~~~~~~~-~l~~l 193 (265)
T PRK10575 156 AWIAMLVAQDSRCLLLDEPTSALDIAHQVDVLA-LVHRL 193 (265)
T ss_pred HHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHH-HHHHH
Confidence 999999999999999999999999999988755 44444
No 159
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=100.00 E-value=3.1e-37 Score=270.76 Aligned_cols=158 Identities=26% Similarity=0.423 Sum_probs=129.8
Q ss_pred cEEEEeEEEEeCCCCCCcceeeceEEEcCCcEEEEEcCCCChHHHHHHHHhcCcCCCccEEEEcCe--------------
Q psy1503 88 HVSLDNVTAQWSLQNADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSLGGT-------------- 153 (265)
Q Consensus 88 ~i~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g~-------------- 153 (265)
.|+++|++++|++ .++++++||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.
T Consensus 2 ~i~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~ 78 (242)
T TIGR03411 2 ILYLEGLSVSFDG---FKALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPDEGSVLFGGTDLTGLPEHQIARAG 78 (242)
T ss_pred eEEEEeeEEEcCC---eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCeecCCCCHHHHHhcC
Confidence 5889999999963 46899999999999999999999999999999999999999999999872
Q ss_pred EEEEecCCCCccc-cHHHHHhcCCccc---------------HHHHHHHHHHhcchhHHhcCCCCCccccCCCCCCCCHH
Q psy1503 154 VSYASQEPWIFAA-TIRQNILFGLPYL---------------RRRYADVIRVCALQDDFDSLPNGDFTVVGERGASLSGG 217 (265)
Q Consensus 154 i~~v~Q~~~l~~~-ti~eni~~~~~~~---------------~~~~~~~~~~~~l~~~i~~l~~g~~t~vg~~g~~LSgG 217 (265)
++|++|++.+|+. |++||+.++.... .++..++++..++ .........+||||
T Consensus 79 i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l-----------~~~~~~~~~~LS~G 147 (242)
T TIGR03411 79 IGRKFQKPTVFENLTVFENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETIGL-----------ADEADRLAGLLSHG 147 (242)
T ss_pred eeEeccccccCCCCCHHHHHHHhhhcccccccccccccHHHHHHHHHHHHHHcCC-----------chhhcCChhhCCHH
Confidence 8999999999975 9999998753210 1122222222222 22344566799999
Q ss_pred HHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHH
Q psy1503 218 QKARINLARAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGC 260 (265)
Q Consensus 218 qrqRialARal~~~~~illLDEp~s~LD~~~~~~i~~~~i~~~ 260 (265)
||||++||||++.+|+++||||||++||+.+...+++ .+..+
T Consensus 148 e~qrv~laral~~~p~~lllDEPt~~LD~~~~~~l~~-~l~~~ 189 (242)
T TIGR03411 148 QKQWLEIGMLLMQDPKLLLLDEPVAGMTDEETEKTAE-LLKSL 189 (242)
T ss_pred HHHHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHH-HHHHH
Confidence 9999999999999999999999999999999988865 44444
No 160
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=100.00 E-value=3e-37 Score=275.52 Aligned_cols=159 Identities=23% Similarity=0.331 Sum_probs=129.5
Q ss_pred CcEEEEeEEEEeCCCCCCcceeeceEEEcCCcEEEEEcCCCChHHHHHHHHhcCcCCCccEEEEcCe-------------
Q psy1503 87 GHVSLDNVTAQWSLQNADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSLGGT------------- 153 (265)
Q Consensus 87 ~~i~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g~------------- 153 (265)
..|+++|++++|+. .++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.
T Consensus 6 ~~l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 82 (269)
T PRK11831 6 NLVDMRGVSFTRGN---RCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEILFDGENIPAMSRSRLYTV 82 (269)
T ss_pred ceEEEeCeEEEECC---EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccChhhHHHH
Confidence 46999999999953 46899999999999999999999999999999999999999999999862
Q ss_pred ---EEEEecCCCCccc-cHHHHHhcCCc----ccH----HHHHHHHHHhcchhHHhcCCCCCccccCCCCCCCCHHHHHH
Q psy1503 154 ---VSYASQEPWIFAA-TIRQNILFGLP----YLR----RRYADVIRVCALQDDFDSLPNGDFTVVGERGASLSGGQKAR 221 (265)
Q Consensus 154 ---i~~v~Q~~~l~~~-ti~eni~~~~~----~~~----~~~~~~~~~~~l~~~i~~l~~g~~t~vg~~g~~LSgGqrqR 221 (265)
++|++|++.+|+. |+.||+.++.. .+. .+..+.++.+++.+. ......+||||||||
T Consensus 83 ~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~-----------~~~~~~~LSgGq~qr 151 (269)
T PRK11831 83 RKRMSMLFQSGALFTDMNVFDNVAYPLREHTQLPAPLLHSTVMMKLEAVGLRGA-----------AKLMPSELSGGMARR 151 (269)
T ss_pred hhcEEEEecccccCCCCCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHcCChhh-----------hhCChhhCCHHHHHH
Confidence 8999999999975 99999986421 111 122233344443322 233457899999999
Q ss_pred HHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHH
Q psy1503 222 INLARAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGC 260 (265)
Q Consensus 222 ialARal~~~~~illLDEp~s~LD~~~~~~i~~~~i~~~ 260 (265)
++|||||+.+|+++||||||++||+.+.+.+++ .+..+
T Consensus 152 v~laral~~~p~lllLDEPt~~LD~~~~~~l~~-~l~~~ 189 (269)
T PRK11831 152 AALARAIALEPDLIMFDEPFVGQDPITMGVLVK-LISEL 189 (269)
T ss_pred HHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHH-HHHHH
Confidence 999999999999999999999999999988755 44444
No 161
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4.2e-37 Score=270.06 Aligned_cols=158 Identities=22% Similarity=0.357 Sum_probs=128.6
Q ss_pred cEEEEeEEEEeCCCCCCcceeeceEEEcCCcEEEEEcCCCChHHHHHHHHhcCcCCCccEEEEcCe--------------
Q psy1503 88 HVSLDNVTAQWSLQNADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSLGGT-------------- 153 (265)
Q Consensus 88 ~i~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g~-------------- 153 (265)
+++++|++++|+. +++++++||++++|++++|+||||||||||+++|+|+++|++|+|.++|.
T Consensus 2 ~l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 78 (242)
T PRK11124 2 SIQLNGINCFYGA---HQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIR 78 (242)
T ss_pred EEEEEeeEEEECC---eeeEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecccccccchhhHH
Confidence 4789999999963 46999999999999999999999999999999999999999999998762
Q ss_pred -----EEEEecCCCCcc-ccHHHHHhcCC-c---cc----HHHHHHHHHHhcchhHHhcCCCCCccccCCCCCCCCHHHH
Q psy1503 154 -----VSYASQEPWIFA-ATIRQNILFGL-P---YL----RRRYADVIRVCALQDDFDSLPNGDFTVVGERGASLSGGQK 219 (265)
Q Consensus 154 -----i~~v~Q~~~l~~-~ti~eni~~~~-~---~~----~~~~~~~~~~~~l~~~i~~l~~g~~t~vg~~g~~LSgGqr 219 (265)
++|++|++.+|+ .|+.||+.++. . .. .++..+.++..++.. .+.....+||||||
T Consensus 79 ~~~~~i~~~~q~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~-----------~~~~~~~~LS~G~~ 147 (242)
T PRK11124 79 ELRRNVGMVFQQYNLWPHLTVQQNLIEAPCRVLGLSKDQALARAEKLLERLRLKP-----------YADRFPLHLSGGQQ 147 (242)
T ss_pred HHHhheEEEecCccccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChh-----------hhhCChhhCCHHHH
Confidence 799999999986 59999997421 0 11 112233333344432 33445579999999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHH
Q psy1503 220 ARINLARAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGC 260 (265)
Q Consensus 220 qRialARal~~~~~illLDEp~s~LD~~~~~~i~~~~i~~~ 260 (265)
||++||||++.+|+++||||||++||+.+...+.+ .+..+
T Consensus 148 qrv~laral~~~p~llilDEPt~~LD~~~~~~l~~-~l~~~ 187 (242)
T PRK11124 148 QRVAIARALMMEPQVLLFDEPTAALDPEITAQIVS-IIREL 187 (242)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCCcCCHHHHHHHHH-HHHHH
Confidence 99999999999999999999999999999988865 55544
No 162
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4e-37 Score=276.68 Aligned_cols=161 Identities=23% Similarity=0.398 Sum_probs=132.8
Q ss_pred CcEEEEeEEEEeCCCCCCcceeeceEEEcCCcEEEEEcCCCChHHHHHHHHhcCcCCCccEEEEcCe-------------
Q psy1503 87 GHVSLDNVTAQWSLQNADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSLGGT------------- 153 (265)
Q Consensus 87 ~~i~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g~------------- 153 (265)
..|+++|++++|+. ..++++++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.
T Consensus 4 ~~l~~~~l~~~~~~--~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~ 81 (283)
T PRK13636 4 YILKVEELNYNYSD--GTHALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRILFDGKPIDYSRKGLMKLR 81 (283)
T ss_pred ceEEEEeEEEEeCC--CCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCEECCCCcchHHHHH
Confidence 36999999999952 246999999999999999999999999999999999999999999999872
Q ss_pred --EEEEecCC--CCccccHHHHHhcCCc---cc----HHHHHHHHHHhcchhHHhcCCCCCccccCCCCCCCCHHHHHHH
Q psy1503 154 --VSYASQEP--WIFAATIRQNILFGLP---YL----RRRYADVIRVCALQDDFDSLPNGDFTVVGERGASLSGGQKARI 222 (265)
Q Consensus 154 --i~~v~Q~~--~l~~~ti~eni~~~~~---~~----~~~~~~~~~~~~l~~~i~~l~~g~~t~vg~~g~~LSgGqrqRi 222 (265)
++|++|++ .+++.|++||+.++.. .. .+++.++++.+++... ......+||||||||+
T Consensus 82 ~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~-----------~~~~~~~LS~G~~qrl 150 (283)
T PRK13636 82 ESVGMVFQDPDNQLFSASVYQDVSFGAVNLKLPEDEVRKRVDNALKRTGIEHL-----------KDKPTHCLSFGQKKRV 150 (283)
T ss_pred hhEEEEecCcchhhccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhh-----------hhCCcccCCHHHHHHH
Confidence 89999998 5678899999987421 11 1234445555555432 2345679999999999
Q ss_pred HHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHHh
Q psy1503 223 NLARAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGCL 261 (265)
Q Consensus 223 alARal~~~~~illLDEp~s~LD~~~~~~i~~~~i~~~l 261 (265)
+|||||+.+|+++||||||++||+.+...+++ .+..+.
T Consensus 151 ~laraL~~~p~lLilDEPt~gLD~~~~~~l~~-~l~~l~ 188 (283)
T PRK13636 151 AIAGVLVMEPKVLVLDEPTAGLDPMGVSEIMK-LLVEMQ 188 (283)
T ss_pred HHHHHHHcCCCEEEEeCCccCCCHHHHHHHHH-HHHHHH
Confidence 99999999999999999999999999988755 444443
No 163
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=100.00 E-value=3.2e-37 Score=270.50 Aligned_cols=158 Identities=24% Similarity=0.446 Sum_probs=129.5
Q ss_pred EEEEeEEEEeCCCCCCcceeeceEEEcCCcEEEEEcCCCChHHHHHHHHhcCcCCCccEEEEcC---------------e
Q psy1503 89 VSLDNVTAQWSLQNADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSLGG---------------T 153 (265)
Q Consensus 89 i~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g---------------~ 153 (265)
++++|++++|+. .++++|+||++++|++++|+||||||||||+++|+|+++|++|+|.++| .
T Consensus 2 l~~~~l~~~~~~---~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 78 (240)
T PRK09493 2 IEFKNVSKHFGP---TQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGLKVNDPKVDERLIRQE 78 (240)
T ss_pred EEEEeEEEEECC---eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCChhHHHHhhc
Confidence 789999999963 4689999999999999999999999999999999999999999999987 2
Q ss_pred EEEEecCCCCcc-ccHHHHHhcCCc----ccH----HHHHHHHHHhcchhHHhcCCCCCccccCCCCCCCCHHHHHHHHH
Q psy1503 154 VSYASQEPWIFA-ATIRQNILFGLP----YLR----RRYADVIRVCALQDDFDSLPNGDFTVVGERGASLSGGQKARINL 224 (265)
Q Consensus 154 i~~v~Q~~~l~~-~ti~eni~~~~~----~~~----~~~~~~~~~~~l~~~i~~l~~g~~t~vg~~g~~LSgGqrqRial 224 (265)
++|++|++.+++ .|+.||+.++.. ... +++.++++..++.+ ........||||||||++|
T Consensus 79 i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~-----------~~~~~~~~LS~G~~qrv~l 147 (240)
T PRK09493 79 AGMVFQQFYLFPHLTALENVMFGPLRVRGASKEEAEKQARELLAKVGLAE-----------RAHHYPSELSGGQQQRVAI 147 (240)
T ss_pred eEEEecccccCCCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCChH-----------HHhcChhhcCHHHHHHHHH
Confidence 899999999886 599999987531 111 12233334333332 2334557899999999999
Q ss_pred HHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHHh
Q psy1503 225 ARAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGCL 261 (265)
Q Consensus 225 ARal~~~~~illLDEp~s~LD~~~~~~i~~~~i~~~l 261 (265)
|||++.+|+++||||||++||+.+...+.+ .+..+.
T Consensus 148 a~al~~~p~llllDEP~~~LD~~~~~~l~~-~l~~~~ 183 (240)
T PRK09493 148 ARALAVKPKLMLFDEPTSALDPELRHEVLK-VMQDLA 183 (240)
T ss_pred HHHHhcCCCEEEEcCCcccCCHHHHHHHHH-HHHHHH
Confidence 999999999999999999999999988866 554443
No 164
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=100.00 E-value=3.4e-37 Score=288.84 Aligned_cols=159 Identities=25% Similarity=0.392 Sum_probs=133.2
Q ss_pred cEEEEeEEEEeCCCCCCcceeeceEEEcCCcEEEEEcCCCChHHHHHHHHhcCcCCCccEEEEcCe-------------E
Q psy1503 88 HVSLDNVTAQWSLQNADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSLGGT-------------V 154 (265)
Q Consensus 88 ~i~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g~-------------i 154 (265)
.++++|++++|++ ..+|+++||+|++|++++|+||||||||||+++|+|+++|++|+|.++|. +
T Consensus 3 ~L~~~nls~~y~~---~~vL~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGll~p~sG~I~l~G~~i~~~~~~~~~~~i 79 (402)
T PRK09536 3 MIDVSDLSVEFGD---TTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEALSARAASRRV 79 (402)
T ss_pred eEEEeeEEEEECC---EEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEEcCcCCHHHHhcce
Confidence 5899999999963 56999999999999999999999999999999999999999999999983 8
Q ss_pred EEEecCCCCc-cccHHHHHhcCCc-c----------cHHHHHHHHHHhcchhHHhcCCCCCccccCCCCCCCCHHHHHHH
Q psy1503 155 SYASQEPWIF-AATIRQNILFGLP-Y----------LRRRYADVIRVCALQDDFDSLPNGDFTVVGERGASLSGGQKARI 222 (265)
Q Consensus 155 ~~v~Q~~~l~-~~ti~eni~~~~~-~----------~~~~~~~~~~~~~l~~~i~~l~~g~~t~vg~~g~~LSgGqrqRi 222 (265)
+|++|++.++ +.|++||+.++.. + +.++++++++..++.+..+ ....+||||||||+
T Consensus 80 g~v~q~~~l~~~~tv~e~v~~~~~~~~~~~~~~~~~~~~~v~~~le~vgl~~~~~-----------~~~~~LSgGerQRv 148 (402)
T PRK09536 80 ASVPQDTSLSFEFDVRQVVEMGRTPHRSRFDTWTETDRAAVERAMERTGVAQFAD-----------RPVTSLSGGERQRV 148 (402)
T ss_pred EEEccCCCCCCCCCHHHHHHhccchhcccccCCCHHHHHHHHHHHHHcCCchhhc-----------CChhhCCHHHHHHH
Confidence 9999999874 6799999988641 1 1233455555555544332 34578999999999
Q ss_pred HHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHHh
Q psy1503 223 NLARAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGCL 261 (265)
Q Consensus 223 alARal~~~~~illLDEp~s~LD~~~~~~i~~~~i~~~l 261 (265)
+|||||+++|+++||||||++||+.+..++++ .+..+.
T Consensus 149 ~IArAL~~~P~iLLLDEPtsgLD~~~~~~l~~-lL~~l~ 186 (402)
T PRK09536 149 LLARALAQATPVLLLDEPTASLDINHQVRTLE-LVRRLV 186 (402)
T ss_pred HHHHHHHcCCCEEEEECCcccCCHHHHHHHHH-HHHHHH
Confidence 99999999999999999999999999988864 444443
No 165
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.8e-37 Score=273.91 Aligned_cols=164 Identities=26% Similarity=0.397 Sum_probs=133.1
Q ss_pred CCcEEEEeEEEEeCCCCCCcceeeceEEEcCCcEEEEEcCCCChHHHHHHHHhcCcCC-----CccEEEEcCe-------
Q psy1503 86 KGHVSLDNVTAQWSLQNADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRI-----SSGKVSLGGT------- 153 (265)
Q Consensus 86 ~~~i~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~-----~~G~i~~~g~------- 153 (265)
...|+++|++++|+. .++|+|+||+|++|++++|+||||||||||+++|+|+++| ++|+|.++|.
T Consensus 17 ~~~l~~~nl~~~~~~---~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~~g~~i~~~~~ 93 (267)
T PRK14235 17 EIKMRARDVSVFYGE---KQALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDIYDPRL 93 (267)
T ss_pred CceEEEEeEEEEECC---EEEEEEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEECccccc
Confidence 457999999999963 4689999999999999999999999999999999999975 8999999871
Q ss_pred --------EEEEecCCCCccccHHHHHhcCCcc-----c----HHHHHHHHHHhcchhHHhcCCCCCccccCCCCCCCCH
Q psy1503 154 --------VSYASQEPWIFAATIRQNILFGLPY-----L----RRRYADVIRVCALQDDFDSLPNGDFTVVGERGASLSG 216 (265)
Q Consensus 154 --------i~~v~Q~~~l~~~ti~eni~~~~~~-----~----~~~~~~~~~~~~l~~~i~~l~~g~~t~vg~~g~~LSg 216 (265)
++|++|++.+|+.|+.||+.++... . .+++.++++.+++.+.+. ......+.+|||
T Consensus 94 ~~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LSg 166 (267)
T PRK14235 94 DVVELRARVGMVFQKPNPFPKSIYENVAYGPRIHGLARSKAELDEIVETSLRKAGLWEEVK-------DRLHEPGTGLSG 166 (267)
T ss_pred chHHHhhceEEEecCCCCCCCcHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCchhhh-------HHhhCCcccCCH
Confidence 7999999999988999999875311 1 122344455555533221 123456779999
Q ss_pred HHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHH
Q psy1503 217 GQKARINLARAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGC 260 (265)
Q Consensus 217 GqrqRialARal~~~~~illLDEp~s~LD~~~~~~i~~~~i~~~ 260 (265)
|||||++|||||+.+|+++||||||++||+.+.+.+.+ ++..+
T Consensus 167 Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~-~L~~l 209 (267)
T PRK14235 167 GQQQRLCIARAIAVSPEVILMDEPCSALDPIATAKVEE-LIDEL 209 (267)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHH-HHHHH
Confidence 99999999999999999999999999999999988755 44444
No 166
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.8e-37 Score=277.38 Aligned_cols=162 Identities=23% Similarity=0.430 Sum_probs=130.3
Q ss_pred cEEEEeEEEEeCCCC--CCcceeeceEEEcCCcEEEEEcCCCChHHHHHHHHhcCcCCCccEEEEcCe------------
Q psy1503 88 HVSLDNVTAQWSLQN--ADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSLGGT------------ 153 (265)
Q Consensus 88 ~i~~~~~~~~~~~~~--~~~~l~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g~------------ 153 (265)
.|+++|++++|++.. ..++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.
T Consensus 2 ~i~~~~l~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 81 (287)
T PRK13641 2 SIKFENVDYIYSPGTPMEKKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSGTITIAGYHITPETGNKNLK 81 (287)
T ss_pred EEEEEEEEEEcCCCCCccccceeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHH
Confidence 478999999996321 146899999999999999999999999999999999999999999999872
Q ss_pred -----EEEEecCC--CCccccHHHHHhcCCc---cc----HHHHHHHHHHhcchhHHhcCCCCCccccCCCCCCCCHHHH
Q psy1503 154 -----VSYASQEP--WIFAATIRQNILFGLP---YL----RRRYADVIRVCALQDDFDSLPNGDFTVVGERGASLSGGQK 219 (265)
Q Consensus 154 -----i~~v~Q~~--~l~~~ti~eni~~~~~---~~----~~~~~~~~~~~~l~~~i~~l~~g~~t~vg~~g~~LSgGqr 219 (265)
++|++|+| .+|+.|+.||+.++.. .. .++..++++.+++... .......+||||||
T Consensus 82 ~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~----------~~~~~~~~LSgGq~ 151 (287)
T PRK13641 82 KLRKKVSLVFQFPEAQLFENTVLKDVEFGPKNFGFSEDEAKEKALKWLKKVGLSED----------LISKSPFELSGGQM 151 (287)
T ss_pred HHHhceEEEEeChhhhhccchHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChh----------HhhCCcccCCHHHH
Confidence 79999998 4777899999987531 11 1223344444444311 12345679999999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHH
Q psy1503 220 ARINLARAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGC 260 (265)
Q Consensus 220 qRialARal~~~~~illLDEp~s~LD~~~~~~i~~~~i~~~ 260 (265)
||++|||||+.+|+++||||||++||+.+...+.+ .+..+
T Consensus 152 qrl~laral~~~p~lLlLDEPt~gLD~~~~~~l~~-~l~~l 191 (287)
T PRK13641 152 RRVAIAGVMAYEPEILCLDEPAAGLDPEGRKEMMQ-LFKDY 191 (287)
T ss_pred HHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHH-HHHHH
Confidence 99999999999999999999999999999888755 55444
No 167
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.5e-37 Score=274.07 Aligned_cols=164 Identities=25% Similarity=0.377 Sum_probs=130.9
Q ss_pred CCcEEEEeEEEEeCCCCCCcceeeceEEEcCCcEEEEEcCCCChHHHHHHHHhcCcC-----CCccEEEEcC--------
Q psy1503 86 KGHVSLDNVTAQWSLQNADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELR-----ISSGKVSLGG-------- 152 (265)
Q Consensus 86 ~~~i~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~-----~~~G~i~~~g-------- 152 (265)
...++++|++++|+. .++|+++||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|
T Consensus 19 ~~~l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~ 95 (268)
T PRK14248 19 EHILEVKDLSIYYGE---KRAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLNILDSNI 95 (268)
T ss_pred CceEEEEEEEEEeCC---ceeeeceEEEEcCCCEEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEEECCEEcccccc
Confidence 457999999999963 468999999999999999999999999999999999864 7899999876
Q ss_pred -------eEEEEecCCCCccccHHHHHhcCCcc----c----HHHHHHHHHHhcchhHHhcCCCCCccccCCCCCCCCHH
Q psy1503 153 -------TVSYASQEPWIFAATIRQNILFGLPY----L----RRRYADVIRVCALQDDFDSLPNGDFTVVGERGASLSGG 217 (265)
Q Consensus 153 -------~i~~v~Q~~~l~~~ti~eni~~~~~~----~----~~~~~~~~~~~~l~~~i~~l~~g~~t~vg~~g~~LSgG 217 (265)
.++|++|++.+|+.|+.||+.++... . +++..++++.+++...+ .......+.+||||
T Consensus 96 ~~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~~~~~~~LSgG 168 (268)
T PRK14248 96 NVVNLRREIGMVFQKPNPFPKSIYNNITHALKYAGERRKSVLDEIVEESLTKAALWDEV-------KDRLHSSALSLSGG 168 (268)
T ss_pred cHHHHhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCCcch-------HHHHhcCcccCCHH
Confidence 28999999999988999999875321 0 11222333333332111 12234567899999
Q ss_pred HHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHH
Q psy1503 218 QKARINLARAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGC 260 (265)
Q Consensus 218 qrqRialARal~~~~~illLDEp~s~LD~~~~~~i~~~~i~~~ 260 (265)
||||++|||||+.+|+++||||||++||+.+...+.+ .+..+
T Consensus 169 q~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~-~l~~~ 210 (268)
T PRK14248 169 QQQRLCIARTLAMKPAVLLLDEPASALDPISNAKIEE-LITEL 210 (268)
T ss_pred HHHHHHHHHHHhCCCCEEEEcCCCcccCHHHHHHHHH-HHHHH
Confidence 9999999999999999999999999999999988855 44444
No 168
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=100.00 E-value=3.5e-37 Score=257.92 Aligned_cols=129 Identities=38% Similarity=0.626 Sum_probs=117.6
Q ss_pred EEEEeEEEEeCCCCCCcceeeceEEEcCCcEEEEEcCCCChHHHHHHHHhcCcCCCccEEEEcCe-------------EE
Q psy1503 89 VSLDNVTAQWSLQNADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSLGGT-------------VS 155 (265)
Q Consensus 89 i~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g~-------------i~ 155 (265)
++++|++++|+.. ..++++++||++++|++++|+||||||||||+++|+|+++|++|+|.++|. ++
T Consensus 1 i~~~~l~~~~~~~-~~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (173)
T cd03246 1 LEVENVSFRYPGA-EPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVRLDGADISQWDPNELGDHVG 79 (173)
T ss_pred CEEEEEEEEcCCC-CCcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEEcccCCHHHHHhheE
Confidence 4689999999642 246899999999999999999999999999999999999999999999872 89
Q ss_pred EEecCCCCccccHHHHHhcCCcccHHHHHHHHHHhcchhHHhcCCCCCccccCCCCCCCCHHHHHHHHHHHHHccCCCEE
Q psy1503 156 YASQEPWIFAATIRQNILFGLPYLRRRYADVIRVCALQDDFDSLPNGDFTVVGERGASLSGGQKARINLARAVYKNADIY 235 (265)
Q Consensus 156 ~v~Q~~~l~~~ti~eni~~~~~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~vg~~g~~LSgGqrqRialARal~~~~~il 235 (265)
|++|++++|+.|++||+ ||||||||++||||++++|+++
T Consensus 80 ~~~q~~~~~~~tv~~~l-----------------------------------------LS~G~~qrv~la~al~~~p~~l 118 (173)
T cd03246 80 YLPQDDELFSGSIAENI-----------------------------------------LSGGQRQRLGLARALYGNPRIL 118 (173)
T ss_pred EECCCCccccCcHHHHC-----------------------------------------cCHHHHHHHHHHHHHhcCCCEE
Confidence 99999999989999997 9999999999999999999999
Q ss_pred EEeCCCCCcCHHHHHHHHHHHHHHH
Q psy1503 236 LLDDPLSAVDMHVGKHLFEDCISGC 260 (265)
Q Consensus 236 lLDEp~s~LD~~~~~~i~~~~i~~~ 260 (265)
||||||++||+.+...+.+ .+..+
T Consensus 119 llDEPt~~LD~~~~~~l~~-~l~~~ 142 (173)
T cd03246 119 VLDEPNSHLDVEGERALNQ-AIAAL 142 (173)
T ss_pred EEECCccccCHHHHHHHHH-HHHHH
Confidence 9999999999999998866 44443
No 169
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=100.00 E-value=2.7e-37 Score=268.32 Aligned_cols=162 Identities=25% Similarity=0.384 Sum_probs=126.1
Q ss_pred EEEEeEEEEeCCCC-CCcceeeceEEEcCCcEEEEEcCCCChHHHHHHHHhcCcCCCccEEEEcC---------------
Q psy1503 89 VSLDNVTAQWSLQN-ADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSLGG--------------- 152 (265)
Q Consensus 89 i~~~~~~~~~~~~~-~~~~l~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g--------------- 152 (265)
++++|++++|+... ..++++|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|
T Consensus 2 l~~~~v~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (228)
T cd03257 2 LEVKNLSVSFPTGGGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGSIIFDGKDLLKLSRRLRKIRR 81 (228)
T ss_pred eEEEeeeEeccCCCcceeeecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccchhhHHHhh
Confidence 78999999996321 12689999999999999999999999999999999999999999999976
Q ss_pred -eEEEEecCCC--Cc-cccHHHHHhcCCc-----ccHHHHH----HHHHHhcchhHHhcCCCCCccccCCCCCCCCHHHH
Q psy1503 153 -TVSYASQEPW--IF-AATIRQNILFGLP-----YLRRRYA----DVIRVCALQDDFDSLPNGDFTVVGERGASLSGGQK 219 (265)
Q Consensus 153 -~i~~v~Q~~~--l~-~~ti~eni~~~~~-----~~~~~~~----~~~~~~~l~~~i~~l~~g~~t~vg~~g~~LSgGqr 219 (265)
.++|++|++. ++ ..|+++|+.++.. ....... +.++..++. .........+||||||
T Consensus 82 ~~i~~~~q~~~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~----------~~~~~~~~~~LS~G~~ 151 (228)
T cd03257 82 KEIQMVFQDPMSSLNPRMTIGEQIAEPLRIHGKLSKKEARKEAVLLLLVGVGLP----------EEVLNRYPHELSGGQR 151 (228)
T ss_pred ccEEEEecCchhhcCCcCCHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHCCCC----------hhHhhCCchhcCHHHH
Confidence 2899999983 44 4699999976421 1111111 122222221 1234456679999999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHHh
Q psy1503 220 ARINLARAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGCL 261 (265)
Q Consensus 220 qRialARal~~~~~illLDEp~s~LD~~~~~~i~~~~i~~~l 261 (265)
||++|||||+.+|+++||||||++||+.+.+.+++ .+..+.
T Consensus 152 qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~-~l~~~~ 192 (228)
T cd03257 152 QRVAIARALALNPKLLIADEPTSALDVSVQAQILD-LLKKLQ 192 (228)
T ss_pred HHHHHHHHHhcCCCEEEecCCCCCCCHHHHHHHHH-HHHHHH
Confidence 99999999999999999999999999999888755 444443
No 170
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6.1e-37 Score=272.87 Aligned_cols=160 Identities=21% Similarity=0.304 Sum_probs=132.5
Q ss_pred CCcEEEEeEEEEeCCCCCCcceeeceEEEcCCcEEEEEcCCCChHHHHHHHHhcCcCCCccEEEEcCe------------
Q psy1503 86 KGHVSLDNVTAQWSLQNADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSLGGT------------ 153 (265)
Q Consensus 86 ~~~i~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g~------------ 153 (265)
...|+++|++++|+. ..+|+++||++++|++++|+||||||||||+++|+|+++|++|+|.++|.
T Consensus 5 ~~~l~i~~l~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~ 81 (265)
T PRK10253 5 VARLRGEQLTLGYGK---YTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHIQHYASKEVAR 81 (265)
T ss_pred ccEEEEEEEEEEECC---EEEeeecceEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEEhhhCCHHHHhh
Confidence 357999999999963 46899999999999999999999999999999999999999999999873
Q ss_pred -EEEEecCCCCcc-ccHHHHHhcCC-cc----------cHHHHHHHHHHhcchhHHhcCCCCCccccCCCCCCCCHHHHH
Q psy1503 154 -VSYASQEPWIFA-ATIRQNILFGL-PY----------LRRRYADVIRVCALQDDFDSLPNGDFTVVGERGASLSGGQKA 220 (265)
Q Consensus 154 -i~~v~Q~~~l~~-~ti~eni~~~~-~~----------~~~~~~~~~~~~~l~~~i~~l~~g~~t~vg~~g~~LSgGqrq 220 (265)
++|++|++.++. .|++||+.++. .. ..+++.++++..++.+.. .....+|||||||
T Consensus 82 ~i~~v~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LS~Gq~q 150 (265)
T PRK10253 82 RIGLLAQNATTPGDITVQELVARGRYPHQPLFTRWRKEDEEAVTKAMQATGITHLA-----------DQSVDTLSGGQRQ 150 (265)
T ss_pred heEEeeccCcCCCCCcHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHh-----------cCCcccCChHHHH
Confidence 899999998875 69999998752 10 112334455555554332 3455799999999
Q ss_pred HHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHH
Q psy1503 221 RINLARAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGC 260 (265)
Q Consensus 221 RialARal~~~~~illLDEp~s~LD~~~~~~i~~~~i~~~ 260 (265)
|++||||++.+|+++||||||++||+.+...+++ .+..+
T Consensus 151 rv~laral~~~p~llllDEPt~gLD~~~~~~l~~-~L~~l 189 (265)
T PRK10253 151 RAWIAMVLAQETAIMLLDEPTTWLDISHQIDLLE-LLSEL 189 (265)
T ss_pred HHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHH-HHHHH
Confidence 9999999999999999999999999999998865 44444
No 171
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=100.00 E-value=4.1e-37 Score=268.05 Aligned_cols=158 Identities=28% Similarity=0.512 Sum_probs=127.9
Q ss_pred EEEEeEEEEeCCCCCCcceeeceEEEcCCcEEEEEcCCCChHHHHHHHHhcCcCCCccEEEEcC--------------eE
Q psy1503 89 VSLDNVTAQWSLQNADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSLGG--------------TV 154 (265)
Q Consensus 89 i~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g--------------~i 154 (265)
|+++|+++.|+. .++++|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++| .+
T Consensus 1 l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i 77 (230)
T TIGR03410 1 LEVSNLNVYYGQ---SHILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGEDITKLPPHERARAGI 77 (230)
T ss_pred CEEEeEEEEeCC---eEEecceeeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHHhCe
Confidence 468999999963 4689999999999999999999999999999999999999999999987 28
Q ss_pred EEEecCCCCccc-cHHHHHhcCCcc---c-HHHHHHHHHHhcchhHHhcCCCCCccccCCCCCCCCHHHHHHHHHHHHHc
Q psy1503 155 SYASQEPWIFAA-TIRQNILFGLPY---L-RRRYADVIRVCALQDDFDSLPNGDFTVVGERGASLSGGQKARINLARAVY 229 (265)
Q Consensus 155 ~~v~Q~~~l~~~-ti~eni~~~~~~---~-~~~~~~~~~~~~l~~~i~~l~~g~~t~vg~~g~~LSgGqrqRialARal~ 229 (265)
+|++|++.+|+. |++||+.++... . .+...++++..+. ..........+||||||||++|||||+
T Consensus 78 ~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~l~~~~~----------l~~~~~~~~~~LS~G~~qrv~la~al~ 147 (230)
T TIGR03410 78 AYVPQGREIFPRLTVEENLLTGLAALPRRSRKIPDEIYELFPV----------LKEMLGRRGGDLSGGQQQQLAIARALV 147 (230)
T ss_pred EEeccCCcccCCCcHHHHHHHHHHhcCcchHHHHHHHHHHHHh----------HHHHhhCChhhCCHHHHHHHHHHHHHh
Confidence 999999999975 999999875321 1 1122333333221 111234556789999999999999999
Q ss_pred cCCCEEEEeCCCCCcCHHHHHHHHHHHHHHH
Q psy1503 230 KNADIYLLDDPLSAVDMHVGKHLFEDCISGC 260 (265)
Q Consensus 230 ~~~~illLDEp~s~LD~~~~~~i~~~~i~~~ 260 (265)
++|+++||||||++||+.+...+.+ .+..+
T Consensus 148 ~~p~illlDEPt~~LD~~~~~~l~~-~l~~~ 177 (230)
T TIGR03410 148 TRPKLLLLDEPTEGIQPSIIKDIGR-VIRRL 177 (230)
T ss_pred cCCCEEEecCCcccCCHHHHHHHHH-HHHHH
Confidence 9999999999999999999998865 44443
No 172
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4.4e-37 Score=275.73 Aligned_cols=162 Identities=22% Similarity=0.365 Sum_probs=129.0
Q ss_pred cEEEEeEEEEeCCCC--CCcceeeceEEEcCCcEEEEEcCCCChHHHHHHHHhcCcCCCccEEEEcCe------------
Q psy1503 88 HVSLDNVTAQWSLQN--ADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSLGGT------------ 153 (265)
Q Consensus 88 ~i~~~~~~~~~~~~~--~~~~l~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g~------------ 153 (265)
.++++|++++|+... ..++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.
T Consensus 2 ~l~~~~l~~~~~~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~ 81 (280)
T PRK13649 2 GINLQNVSYTYQAGTPFEGRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQGSVRVDDTLITSTSKNKDIK 81 (280)
T ss_pred eEEEEEEEEEcCCCCccccceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccCHH
Confidence 378999999996421 136899999999999999999999999999999999999999999999872
Q ss_pred -----EEEEecCC--CCccccHHHHHhcCCc---ccHH----HHHHHHHHhcchhHHhcCCCCCccccCCCCCCCCHHHH
Q psy1503 154 -----VSYASQEP--WIFAATIRQNILFGLP---YLRR----RYADVIRVCALQDDFDSLPNGDFTVVGERGASLSGGQK 219 (265)
Q Consensus 154 -----i~~v~Q~~--~l~~~ti~eni~~~~~---~~~~----~~~~~~~~~~l~~~i~~l~~g~~t~vg~~g~~LSgGqr 219 (265)
++|++|++ .+++.|++||+.++.. ...+ +..++++..++.. ........+||||||
T Consensus 82 ~~~~~i~~~~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~----------~~~~~~~~~LSgG~~ 151 (280)
T PRK13649 82 QIRKKVGLVFQFPESQLFEETVLKDVAFGPQNFGVSQEEAEALAREKLALVGISE----------SLFEKNPFELSGGQM 151 (280)
T ss_pred HHHhheEEEeeChhhhhccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCh----------hhhhCCcccCCHHHH
Confidence 79999997 5778899999987521 1111 1223333333321 112345678999999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHH
Q psy1503 220 ARINLARAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGC 260 (265)
Q Consensus 220 qRialARal~~~~~illLDEp~s~LD~~~~~~i~~~~i~~~ 260 (265)
||++|||||+.+|+++||||||++||+.+.+.+++ .+..+
T Consensus 152 qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~-~l~~~ 191 (280)
T PRK13649 152 RRVAIAGILAMEPKILVLDEPTAGLDPKGRKELMT-LFKKL 191 (280)
T ss_pred HHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHH-HHHHH
Confidence 99999999999999999999999999999988765 34443
No 173
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.7e-37 Score=273.43 Aligned_cols=164 Identities=25% Similarity=0.376 Sum_probs=133.8
Q ss_pred CCcEEEEeEEEEeCCCCCCcceeeceEEEcCCcEEEEEcCCCChHHHHHHHHhcCcC-----CCccEEEEcCe-------
Q psy1503 86 KGHVSLDNVTAQWSLQNADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELR-----ISSGKVSLGGT------- 153 (265)
Q Consensus 86 ~~~i~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~-----~~~G~i~~~g~------- 153 (265)
...|+++|++++|+. +++|+|+||++++|++++|+||||||||||+++|+|+++ |++|+|.++|.
T Consensus 18 ~~~l~~~nl~~~~~~---~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~ 94 (267)
T PRK14237 18 EIALSTKDLHVYYGK---KEAIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDINRKEI 94 (267)
T ss_pred CeEEEEeeEEEEECC---eeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhccCccCCCCcceEEEECCEEcccccC
Confidence 347999999999952 569999999999999999999999999999999999996 58999998872
Q ss_pred --------EEEEecCCCCccccHHHHHhcCCcc----c----HHHHHHHHHHhcchhHHhcCCCCCccccCCCCCCCCHH
Q psy1503 154 --------VSYASQEPWIFAATIRQNILFGLPY----L----RRRYADVIRVCALQDDFDSLPNGDFTVVGERGASLSGG 217 (265)
Q Consensus 154 --------i~~v~Q~~~l~~~ti~eni~~~~~~----~----~~~~~~~~~~~~l~~~i~~l~~g~~t~vg~~g~~LSgG 217 (265)
++|++|++.+|+.|++||+.++... . .+++.++++.+++.+.+. +..+..+.+||||
T Consensus 95 ~~~~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~-------~~~~~~~~~LS~G 167 (267)
T PRK14237 95 NVYEMRKHIGMVFQRPNPFAKSIYENITFALERAGVKDKKVLDEIVETSLKQAALWDQVK-------DDLHKSALTLSGG 167 (267)
T ss_pred ChHHHhcceEEEecCCccccccHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCchhh-------hhhcCCcccCCHH
Confidence 8999999999989999999875311 1 122344455555533221 2345667899999
Q ss_pred HHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHH
Q psy1503 218 QKARINLARAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGC 260 (265)
Q Consensus 218 qrqRialARal~~~~~illLDEp~s~LD~~~~~~i~~~~i~~~ 260 (265)
||||++||||++++|+++||||||++||+.+...+.+ .+..+
T Consensus 168 ~~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~-~l~~~ 209 (267)
T PRK14237 168 QQQRLCIARAIAVKPDILLMDEPASALDPISTMQLEE-TMFEL 209 (267)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHH-HHHHH
Confidence 9999999999999999999999999999999888765 44444
No 174
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=3.9e-37 Score=263.88 Aligned_cols=147 Identities=23% Similarity=0.378 Sum_probs=125.8
Q ss_pred cEEEEeEEEEeCCC-CCCcceeeceEEEcCCcEEEEEcCCCChHHHHHHHHhcCcC---CCccEEEEcCe----------
Q psy1503 88 HVSLDNVTAQWSLQ-NADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELR---ISSGKVSLGGT---------- 153 (265)
Q Consensus 88 ~i~~~~~~~~~~~~-~~~~~l~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~---~~~G~i~~~g~---------- 153 (265)
.+.++|++|.|+.. .+.++|+++||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~il~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~G~i~i~g~~~~~~~~~~~ 82 (202)
T cd03233 3 TLSWRNISFTTGKGRSKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIPYKEFAEKYP 82 (202)
T ss_pred eEEEEccEEEeccCCCCceeeeeEEEEECCCcEEEEECCCCCCHHHHHHHhcccCCCCCCcceEEEECCEECccchhhhc
Confidence 47899999999753 24579999999999999999999999999999999999999 89999999883
Q ss_pred --EEEEecCCCCcc-ccHHHHHhcCCcccHHHHHHHHHHhcchhHHhcCCCCCccccCCCCCCCCHHHHHHHHHHHHHcc
Q psy1503 154 --VSYASQEPWIFA-ATIRQNILFGLPYLRRRYADVIRVCALQDDFDSLPNGDFTVVGERGASLSGGQKARINLARAVYK 230 (265)
Q Consensus 154 --i~~v~Q~~~l~~-~ti~eni~~~~~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~vg~~g~~LSgGqrqRialARal~~ 230 (265)
++|++|++.+++ .|++||+.++... . ..+....||||||||++|||||++
T Consensus 83 ~~i~~~~q~~~~~~~~tv~~~l~~~~~~-----~----------------------~~~~~~~LS~Ge~qrl~laral~~ 135 (202)
T cd03233 83 GEIIYVSEEDVHFPTLTVRETLDFALRC-----K----------------------GNEFVRGISGGERKRVSIAEALVS 135 (202)
T ss_pred ceEEEEecccccCCCCcHHHHHhhhhhh-----c----------------------cccchhhCCHHHHHHHHHHHHHhh
Confidence 899999998887 5999999764210 0 123456899999999999999999
Q ss_pred CCCEEEEeCCCCCcCHHHHHHHHHHHHHHHhh
Q psy1503 231 NADIYLLDDPLSAVDMHVGKHLFEDCISGCLT 262 (265)
Q Consensus 231 ~~~illLDEp~s~LD~~~~~~i~~~~i~~~l~ 262 (265)
+|+++||||||++||+.+++.+++ ++..+.+
T Consensus 136 ~p~llllDEPt~~LD~~~~~~~~~-~l~~~~~ 166 (202)
T cd03233 136 RASVLCWDNSTRGLDSSTALEILK-CIRTMAD 166 (202)
T ss_pred CCCEEEEcCCCccCCHHHHHHHHH-HHHHHHH
Confidence 999999999999999999998865 5555433
No 175
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=5.6e-37 Score=275.63 Aligned_cols=162 Identities=26% Similarity=0.383 Sum_probs=133.3
Q ss_pred CcEEEEeEEEEeCCCCCCcceeeceEEEcCCcEEEEEcCCCChHHHHHHHHhcCcCCCc---cEEEEcCe----------
Q psy1503 87 GHVSLDNVTAQWSLQNADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISS---GKVSLGGT---------- 153 (265)
Q Consensus 87 ~~i~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~---G~i~~~g~---------- 153 (265)
..|+++|++++|+.. ..++++++||+|++|++++|+||||||||||+++|+|+++|++ |+|.++|.
T Consensus 4 ~~l~i~~l~~~~~~~-~~~~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~i~i~g~~~~~~~~~~~ 82 (282)
T PRK13640 4 NIVEFKHVSFTYPDS-KKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGITLTAKTVWDI 82 (282)
T ss_pred ceEEEEEEEEEcCCC-CccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCCCCCcEEEECCEECCcCCHHHH
Confidence 469999999999632 2468999999999999999999999999999999999999998 89999883
Q ss_pred ---EEEEecCCC--CccccHHHHHhcCCc---ccH----HHHHHHHHHhcchhHHhcCCCCCccccCCCCCCCCHHHHHH
Q psy1503 154 ---VSYASQEPW--IFAATIRQNILFGLP---YLR----RRYADVIRVCALQDDFDSLPNGDFTVVGERGASLSGGQKAR 221 (265)
Q Consensus 154 ---i~~v~Q~~~--l~~~ti~eni~~~~~---~~~----~~~~~~~~~~~l~~~i~~l~~g~~t~vg~~g~~LSgGqrqR 221 (265)
++|++|++. +++.|+.||+.++.. ... +++.++++.+++.+... ....+||||||||
T Consensus 83 ~~~ig~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~-----------~~~~~LS~G~~qr 151 (282)
T PRK13640 83 REKVGIVFQNPDNQFVGATVGDDVAFGLENRAVPRPEMIKIVRDVLADVGMLDYID-----------SEPANLSGGQKQR 151 (282)
T ss_pred HhheEEEEECHHHhhccCCHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCChhHhc-----------CCcccCCHHHHHH
Confidence 899999984 457899999987532 111 23445566666654443 3446999999999
Q ss_pred HHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHHh
Q psy1503 222 INLARAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGCL 261 (265)
Q Consensus 222 ialARal~~~~~illLDEp~s~LD~~~~~~i~~~~i~~~l 261 (265)
++|||||+.+|+++||||||++||+.+...+.+ .+..+.
T Consensus 152 v~laral~~~P~llllDEPt~gLD~~~~~~l~~-~l~~l~ 190 (282)
T PRK13640 152 VAIAGILAVEPKIIILDESTSMLDPAGKEQILK-LIRKLK 190 (282)
T ss_pred HHHHHHHHcCCCEEEEECCcccCCHHHHHHHHH-HHHHHH
Confidence 999999999999999999999999999998866 444443
No 176
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=100.00 E-value=6.9e-37 Score=263.95 Aligned_cols=155 Identities=31% Similarity=0.493 Sum_probs=128.8
Q ss_pred EEEEeEEEEeCCCCCCcceeeceEEEcCCcEEEEEcCCCChHHHHHHHHhcCcCCCccEEEEcCe-----------EEEE
Q psy1503 89 VSLDNVTAQWSLQNADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSLGGT-----------VSYA 157 (265)
Q Consensus 89 i~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g~-----------i~~v 157 (265)
++++|++++|+. .++|+||++++|++++|+||||||||||+++|+|+++|++|+|.++|. ++|+
T Consensus 1 ~~~~~l~~~~~~-----~~~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~i~~v 75 (213)
T TIGR01277 1 LALDKVRYEYEH-----LPMEFDLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVNDQSHTGLAPYQRPVSML 75 (213)
T ss_pred CeEEeeeEEeCC-----cceeeEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEcccCChhccceEEE
Confidence 368999999952 467999999999999999999999999999999999999999999873 8999
Q ss_pred ecCCCCcc-ccHHHHHhcCCc--c-----cHHHHHHHHHHhcchhHHhcCCCCCccccCCCCCCCCHHHHHHHHHHHHHc
Q psy1503 158 SQEPWIFA-ATIRQNILFGLP--Y-----LRRRYADVIRVCALQDDFDSLPNGDFTVVGERGASLSGGQKARINLARAVY 229 (265)
Q Consensus 158 ~Q~~~l~~-~ti~eni~~~~~--~-----~~~~~~~~~~~~~l~~~i~~l~~g~~t~vg~~g~~LSgGqrqRialARal~ 229 (265)
+|++.+|+ .|+.||+.++.. . ...++.++++..++.+..... ..+||||||||++||||++
T Consensus 76 ~q~~~~~~~~t~~en~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~LS~G~~qrl~laral~ 144 (213)
T TIGR01277 76 FQENNLFAHLTVRQNIGLGLHPGLKLNAEQQEKVVDAAQQVGIADYLDRL-----------PEQLSGGQRQRVALARCLV 144 (213)
T ss_pred eccCccCCCCcHHHHHHhHhhccCCccHHHHHHHHHHHHHcCcHHHhhCC-----------cccCCHHHHHHHHHHHHHh
Confidence 99999987 599999976421 1 123445566666665544443 3589999999999999999
Q ss_pred cCCCEEEEeCCCCCcCHHHHHHHHHHHHHHH
Q psy1503 230 KNADIYLLDDPLSAVDMHVGKHLFEDCISGC 260 (265)
Q Consensus 230 ~~~~illLDEp~s~LD~~~~~~i~~~~i~~~ 260 (265)
.+|+++||||||++||..+...+++ .+..+
T Consensus 145 ~~p~llllDEPt~~LD~~~~~~~~~-~l~~~ 174 (213)
T TIGR01277 145 RPNPILLLDEPFSALDPLLREEMLA-LVKQL 174 (213)
T ss_pred cCCCEEEEcCCCccCCHHHHHHHHH-HHHHH
Confidence 9999999999999999999998865 34444
No 177
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=6.2e-37 Score=275.01 Aligned_cols=162 Identities=23% Similarity=0.363 Sum_probs=134.3
Q ss_pred CcEEEEeEEEEeCCCC---CCcceeeceEEEcCCcEEEEEcCCCChHHHHHHHHhcCcCCCccEEEEcCe----------
Q psy1503 87 GHVSLDNVTAQWSLQN---ADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSLGGT---------- 153 (265)
Q Consensus 87 ~~i~~~~~~~~~~~~~---~~~~l~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g~---------- 153 (265)
.+++++|++++|+... .+++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.
T Consensus 3 ~~l~~~~l~~~~~~~~~~~~~~vl~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~ 82 (280)
T PRK13633 3 EMIKCKNVSYKYESNEESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSEGKVYVDGLDTSDEENLWD 82 (280)
T ss_pred ceEEEeeeEEEcCCCCCCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeccccccHHH
Confidence 3689999999996421 246999999999999999999999999999999999999999999999872
Q ss_pred ----EEEEecCCC--CccccHHHHHhcCCc---cc----HHHHHHHHHHhcchhHHhcCCCCCccccCCCCCCCCHHHHH
Q psy1503 154 ----VSYASQEPW--IFAATIRQNILFGLP---YL----RRRYADVIRVCALQDDFDSLPNGDFTVVGERGASLSGGQKA 220 (265)
Q Consensus 154 ----i~~v~Q~~~--l~~~ti~eni~~~~~---~~----~~~~~~~~~~~~l~~~i~~l~~g~~t~vg~~g~~LSgGqrq 220 (265)
++|++|+|. ++..|+.+|+.|+.. .. .+++.++++.+++.+.+.. ...+|||||||
T Consensus 83 ~~~~i~~v~q~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~-----------~~~~LS~G~~q 151 (280)
T PRK13633 83 IRNKAGMVFQNPDNQIVATIVEEDVAFGPENLGIPPEEIRERVDESLKKVGMYEYRRH-----------APHLLSGGQKQ 151 (280)
T ss_pred HhhheEEEecChhhhhccccHHHHHHhhHhhcCCCHHHHHHHHHHHHHHCCCHhHhhC-----------CcccCCHHHHH
Confidence 899999984 566799999988632 11 2344556666666554443 34689999999
Q ss_pred HHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHH
Q psy1503 221 RINLARAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGC 260 (265)
Q Consensus 221 RialARal~~~~~illLDEp~s~LD~~~~~~i~~~~i~~~ 260 (265)
|++|||||+.+|+++||||||++||+.+...+.+ .+..+
T Consensus 152 rv~laral~~~p~llllDEPt~gLD~~~~~~l~~-~l~~l 190 (280)
T PRK13633 152 RVAIAGILAMRPECIIFDEPTAMLDPSGRREVVN-TIKEL 190 (280)
T ss_pred HHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHH-HHHHH
Confidence 9999999999999999999999999999998865 55444
No 178
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=100.00 E-value=8.4e-37 Score=270.27 Aligned_cols=158 Identities=25% Similarity=0.424 Sum_probs=133.6
Q ss_pred cEEEEeEEEEeCCCCCCcceeeceEEEcCCcEEEEEcCCCChHHHHHHHHhcCcCCCccEEEEcC--eEEEEecCCCCcc
Q psy1503 88 HVSLDNVTAQWSLQNADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSLGG--TVSYASQEPWIFA 165 (265)
Q Consensus 88 ~i~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g--~i~~v~Q~~~l~~ 165 (265)
.++++|++++|++ .++|+++||+|++|++++|+||||||||||+++|+|+++|++|+|.+++ .++|++|++.++.
T Consensus 4 ~l~~~~l~~~~~~---~~vl~~vs~~i~~Ge~~~I~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~~~~~i~~v~q~~~~~~ 80 (251)
T PRK09544 4 LVSLENVSVSFGQ---RRVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVIKRNGKLRIGYVPQKLYLDT 80 (251)
T ss_pred EEEEeceEEEECC---ceEEEeEEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCccCEEEecccccccc
Confidence 6899999999963 4699999999999999999999999999999999999999999999987 4999999987764
Q ss_pred ---ccHHHHHhcCCcccHHHHHHHHHHhcchhHHhcCCCCCccccCCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCC
Q psy1503 166 ---ATIRQNILFGLPYLRRRYADVIRVCALQDDFDSLPNGDFTVVGERGASLSGGQKARINLARAVYKNADIYLLDDPLS 242 (265)
Q Consensus 166 ---~ti~eni~~~~~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~vg~~g~~LSgGqrqRialARal~~~~~illLDEp~s 242 (265)
.|+.+|+.+......+++.++++.+++.+.++. ....||||||||++||||++.+|+++||||||+
T Consensus 81 ~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~-----------~~~~LSgGq~qrv~laral~~~p~lllLDEPt~ 149 (251)
T PRK09544 81 TLPLTVNRFLRLRPGTKKEDILPALKRVQAGHLIDA-----------PMQKLSGGETQRVLLARALLNRPQLLVLDEPTQ 149 (251)
T ss_pred ccChhHHHHHhccccccHHHHHHHHHHcCChHHHhC-----------ChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCc
Confidence 388998866433334556667777777654433 346899999999999999999999999999999
Q ss_pred CcCHHHHHHHHHHHHHHH
Q psy1503 243 AVDMHVGKHLFEDCISGC 260 (265)
Q Consensus 243 ~LD~~~~~~i~~~~i~~~ 260 (265)
+||+.+...+++ .+..+
T Consensus 150 ~LD~~~~~~l~~-~L~~~ 166 (251)
T PRK09544 150 GVDVNGQVALYD-LIDQL 166 (251)
T ss_pred CCCHHHHHHHHH-HHHHH
Confidence 999999988765 44443
No 179
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=100.00 E-value=4.3e-37 Score=271.07 Aligned_cols=158 Identities=26% Similarity=0.407 Sum_probs=128.3
Q ss_pred cEEEEeEEEEeCCCCCCcceeeceEEEcCCcEEEEEcCCCChHHHHHHHHhcCcCCCccEEEEcC---------------
Q psy1503 88 HVSLDNVTAQWSLQNADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSLGG--------------- 152 (265)
Q Consensus 88 ~i~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g--------------- 152 (265)
.++++|++++|+. .++++|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|
T Consensus 3 ~l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 79 (250)
T PRK11264 3 AIEVKNLVKKFHG---QTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIDTARSLSQQKGL 79 (250)
T ss_pred cEEEeceEEEECC---eeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccccccchhhH
Confidence 5899999999963 4689999999999999999999999999999999999999999998865
Q ss_pred ------eEEEEecCCCCcc-ccHHHHHhcCC----cccH----HHHHHHHHHhcchhHHhcCCCCCccccCCCCCCCCHH
Q psy1503 153 ------TVSYASQEPWIFA-ATIRQNILFGL----PYLR----RRYADVIRVCALQDDFDSLPNGDFTVVGERGASLSGG 217 (265)
Q Consensus 153 ------~i~~v~Q~~~l~~-~ti~eni~~~~----~~~~----~~~~~~~~~~~l~~~i~~l~~g~~t~vg~~g~~LSgG 217 (265)
.++|++|++.+++ .|++||+.++. .... ++..++++..++. ........+||||
T Consensus 80 ~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~-----------~~~~~~~~~LS~G 148 (250)
T PRK11264 80 IRQLRQHVGFVFQNFNLFPHRTVLENIIEGPVIVKGEPKEEATARARELLAKVGLA-----------GKETSYPRRLSGG 148 (250)
T ss_pred HHHhhhhEEEEecCcccCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCc-----------chhhCChhhCChH
Confidence 2899999999886 69999997642 1111 1222233333332 2234556799999
Q ss_pred HHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHH
Q psy1503 218 QKARINLARAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGC 260 (265)
Q Consensus 218 qrqRialARal~~~~~illLDEp~s~LD~~~~~~i~~~~i~~~ 260 (265)
||||++|||||+.+|+++||||||++||+.+...+++ .+..+
T Consensus 149 q~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~-~l~~~ 190 (250)
T PRK11264 149 QQQRVAIARALAMRPEVILFDEPTSALDPELVGEVLN-TIRQL 190 (250)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHH-HHHHH
Confidence 9999999999999999999999999999999988865 44444
No 180
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=100.00 E-value=4.2e-37 Score=283.10 Aligned_cols=159 Identities=24% Similarity=0.369 Sum_probs=129.4
Q ss_pred CcEEEEeEEEEeCCCCCCcceeeceEEEcCCcEEEEEcCCCChHHHHHHHHhcCcCCCccEEEEcCe------------E
Q psy1503 87 GHVSLDNVTAQWSLQNADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSLGGT------------V 154 (265)
Q Consensus 87 ~~i~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g~------------i 154 (265)
..|+++|++++|+. ..+|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|. +
T Consensus 40 ~~i~i~nl~k~y~~---~~~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~p~~G~i~i~G~~~~~~~~~~~~~i 116 (340)
T PRK13536 40 VAIDLAGVSKSYGD---KAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKITVLGVPVPARARLARARI 116 (340)
T ss_pred eeEEEEEEEEEECC---EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCceEEEECCEECCcchHHHhccE
Confidence 46999999999963 46999999999999999999999999999999999999999999999883 9
Q ss_pred EEEecCCCCcc-ccHHHHHhcCC-c--ccH----HHHHHHHHHhcchhHHhcCCCCCccccCCCCCCCCHHHHHHHHHHH
Q psy1503 155 SYASQEPWIFA-ATIRQNILFGL-P--YLR----RRYADVIRVCALQDDFDSLPNGDFTVVGERGASLSGGQKARINLAR 226 (265)
Q Consensus 155 ~~v~Q~~~l~~-~ti~eni~~~~-~--~~~----~~~~~~~~~~~l~~~i~~l~~g~~t~vg~~g~~LSgGqrqRialAR 226 (265)
||+||++.++. .|+.||+.+.. . ... ++..++++.+++.+ .......+||||||||++|||
T Consensus 117 g~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~L~~-----------~~~~~~~~LS~G~kqrv~lA~ 185 (340)
T PRK13536 117 GVVPQFDNLDLEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLES-----------KADARVSDLSGGMKRRLTLAR 185 (340)
T ss_pred EEEeCCccCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCch-----------hhCCChhhCCHHHHHHHHHHH
Confidence 99999999875 69999998521 1 111 12223333333322 123445689999999999999
Q ss_pred HHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHH
Q psy1503 227 AVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGC 260 (265)
Q Consensus 227 al~~~~~illLDEp~s~LD~~~~~~i~~~~i~~~ 260 (265)
||+++|+++||||||++||+.++..+++ .+..+
T Consensus 186 aL~~~P~lLiLDEPt~gLD~~~r~~l~~-~l~~l 218 (340)
T PRK13536 186 ALINDPQLLILDEPTTGLDPHARHLIWE-RLRSL 218 (340)
T ss_pred HHhcCCCEEEEECCCCCCCHHHHHHHHH-HHHHH
Confidence 9999999999999999999999999866 44444
No 181
>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=8.3e-37 Score=269.69 Aligned_cols=163 Identities=27% Similarity=0.410 Sum_probs=131.5
Q ss_pred CcEEEEeEEEEeCCCCCCcceeeceEEEcCCcEEEEEcCCCChHHHHHHHHhcCcCCC-----ccEEEEcC---------
Q psy1503 87 GHVSLDNVTAQWSLQNADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRIS-----SGKVSLGG--------- 152 (265)
Q Consensus 87 ~~i~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~-----~G~i~~~g--------- 152 (265)
..++++|++++|+. .++|+|+||+|++|++++|+||||||||||+++|+|+++|+ +|+|.++|
T Consensus 3 ~~l~~~~l~~~~~~---~~il~~~s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~ 79 (251)
T PRK14249 3 PKIKIRGVNFFYHK---HQVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDNENIYSPNLD 79 (251)
T ss_pred ceEEEEEEEEEECC---eeEecceEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCccccCCcccEEEECCEEccccccC
Confidence 36899999999963 45899999999999999999999999999999999999997 69998875
Q ss_pred ------eEEEEecCCCCccccHHHHHhcCCcc----cH----HHHHHHHHHhcchhHHhcCCCCCccccCCCCCCCCHHH
Q psy1503 153 ------TVSYASQEPWIFAATIRQNILFGLPY----LR----RRYADVIRVCALQDDFDSLPNGDFTVVGERGASLSGGQ 218 (265)
Q Consensus 153 ------~i~~v~Q~~~l~~~ti~eni~~~~~~----~~----~~~~~~~~~~~l~~~i~~l~~g~~t~vg~~g~~LSgGq 218 (265)
.++|++|++.+|+.|++||+.++... .. +.+.++++..++.+.+ .......+.+|||||
T Consensus 80 ~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l-------~~~~~~~~~~LS~Gq 152 (251)
T PRK14249 80 VVNLRKRVGMVFQQPNPFPKSIFDNVAFGPRMLGTTAQSRLDEVVEKSLRQAALWDEV-------KDNLHKSGLALSGGQ 152 (251)
T ss_pred hHHhhceEEEEecCCccCcCcHHHHHhhHHHhcCCChhhHHHHHHHHHHHHhCCchhh-------hhHhhCCcccCCHHH
Confidence 29999999999988999999875321 11 1222233333332222 123456778999999
Q ss_pred HHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHH
Q psy1503 219 KARINLARAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGC 260 (265)
Q Consensus 219 rqRialARal~~~~~illLDEp~s~LD~~~~~~i~~~~i~~~ 260 (265)
|||++|||||+.+|+++||||||++||+.+...+.+ .+..+
T Consensus 153 ~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~-~l~~~ 193 (251)
T PRK14249 153 QQRLCIARVLAIEPEVILMDEPCSALDPVSTMRIEE-LMQEL 193 (251)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHH-HHHHH
Confidence 999999999999999999999999999999988755 55444
No 182
>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=8.9e-37 Score=269.48 Aligned_cols=164 Identities=23% Similarity=0.357 Sum_probs=133.4
Q ss_pred CcEEEEeEEEEeCCCCCCcceeeceEEEcCCcEEEEEcCCCChHHHHHHHHhcCcCC-----CccEEEEcCe--------
Q psy1503 87 GHVSLDNVTAQWSLQNADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRI-----SSGKVSLGGT-------- 153 (265)
Q Consensus 87 ~~i~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~-----~~G~i~~~g~-------- 153 (265)
..++++|++++|+. .++|+|+||+|++|++++|+||||||||||+++|+|+.+| ++|+|.++|.
T Consensus 3 ~~l~~~~l~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~ 79 (251)
T PRK14270 3 IKMESKNLNLWYGE---KQALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYDKDVD 79 (251)
T ss_pred cEEEEEEeEEEECC---eeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEEECCEeccccccc
Confidence 46899999999963 4689999999999999999999999999999999999875 7999999862
Q ss_pred -------EEEEecCCCCccccHHHHHhcCCcc----c----HHHHHHHHHHhcchhHHhcCCCCCccccCCCCCCCCHHH
Q psy1503 154 -------VSYASQEPWIFAATIRQNILFGLPY----L----RRRYADVIRVCALQDDFDSLPNGDFTVVGERGASLSGGQ 218 (265)
Q Consensus 154 -------i~~v~Q~~~l~~~ti~eni~~~~~~----~----~~~~~~~~~~~~l~~~i~~l~~g~~t~vg~~g~~LSgGq 218 (265)
++|++|++.+|+.|++||+.++... . .+++.++++.+++.+.+.. ........|||||
T Consensus 80 ~~~~~~~i~~~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-------~~~~~~~~LS~G~ 152 (251)
T PRK14270 80 VVELRKRVGMVFQKPNPFPMSIYDNVAYGPRIHGIKDKKELDKIVEWALKKAALWDEVKD-------DLKKSALKLSGGQ 152 (251)
T ss_pred HHHHHhheEEEecCCCcCCCcHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCchhhhh-------HhhCCcccCCHHH
Confidence 8999999999999999999875311 1 1233445555554332221 2345667999999
Q ss_pred HHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHHh
Q psy1503 219 KARINLARAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGCL 261 (265)
Q Consensus 219 rqRialARal~~~~~illLDEp~s~LD~~~~~~i~~~~i~~~l 261 (265)
|||++||||++.+|+++||||||++||+.+...+.+ .+..+.
T Consensus 153 ~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~-~L~~~~ 194 (251)
T PRK14270 153 QQRLCIARTIAVKPDVILMDEPTSALDPISTLKIED-LMVELK 194 (251)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHH-HHHHHH
Confidence 999999999999999999999999999999998855 555443
No 183
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.
Probab=100.00 E-value=5.5e-37 Score=265.78 Aligned_cols=162 Identities=27% Similarity=0.446 Sum_probs=132.5
Q ss_pred EEEEeEEEEeCCCC-CCcceeeceEEEcCCcEEEEEcCCCChHHHHHHHHhcCcCCCccEEEEcCe--------------
Q psy1503 89 VSLDNVTAQWSLQN-ADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSLGGT-------------- 153 (265)
Q Consensus 89 i~~~~~~~~~~~~~-~~~~l~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g~-------------- 153 (265)
++++|+++.|+... ...+++|+||++++|++++|+||||||||||+++|+|+++|++|+|.++|.
T Consensus 2 l~~~~l~~~~~~~~~~~~il~~vs~~i~~G~~~~I~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (220)
T TIGR02982 2 ISIRNLNHYYGHGSLRKQVLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSVQEGSLKVLGQELYGASEKELVQLR 81 (220)
T ss_pred EEEEEEEEEccCCCcceeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEhHhcCHhHHHHHH
Confidence 68999999996321 246899999999999999999999999999999999999999999999873
Q ss_pred --EEEEecCCCCcc-ccHHHHHhcCCc----cc----HHHHHHHHHHhcchhHHhcCCCCCccccCCCCCCCCHHHHHHH
Q psy1503 154 --VSYASQEPWIFA-ATIRQNILFGLP----YL----RRRYADVIRVCALQDDFDSLPNGDFTVVGERGASLSGGQKARI 222 (265)
Q Consensus 154 --i~~v~Q~~~l~~-~ti~eni~~~~~----~~----~~~~~~~~~~~~l~~~i~~l~~g~~t~vg~~g~~LSgGqrqRi 222 (265)
++|++|++.+|+ .|+.||+.++.. .. .+++.++++.+++.+.+. ....+||+|||||+
T Consensus 82 ~~i~~~~q~~~~~~~~t~~~n~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~lS~G~~qrv 150 (220)
T TIGR02982 82 RNIGYIFQAHNLLGFLTARQNVQMALELQPNLSYQEARERARAMLEAVGLGDHLD-----------YYPHNLSGGQKQRV 150 (220)
T ss_pred hheEEEcCChhhcCCCCHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCChhhhh-----------cChhhCCHHHHHHH
Confidence 899999999987 699999986431 11 123444555555544433 34468999999999
Q ss_pred HHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHHhh
Q psy1503 223 NLARAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGCLT 262 (265)
Q Consensus 223 alARal~~~~~illLDEp~s~LD~~~~~~i~~~~i~~~l~ 262 (265)
+||||++.+|+++||||||++||+.+...+++ .+..+.+
T Consensus 151 ~laral~~~p~illlDEP~~~LD~~~~~~l~~-~l~~~~~ 189 (220)
T TIGR02982 151 AIARALVHRPKLVLADEPTAALDSKSGRDVVE-LMQKLAR 189 (220)
T ss_pred HHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHH-HHHHHHH
Confidence 99999999999999999999999999988755 4555543
No 184
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=100.00 E-value=7.1e-37 Score=271.11 Aligned_cols=161 Identities=22% Similarity=0.364 Sum_probs=131.1
Q ss_pred CCcEEEEeEEEEeCCCCCCcceeeceEEEcCCcEEEEEcCCCChHHHHHHHHhcCcCCCccEEEEcC-------------
Q psy1503 86 KGHVSLDNVTAQWSLQNADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSLGG------------- 152 (265)
Q Consensus 86 ~~~i~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g------------- 152 (265)
++.++++|+++.|++ +.+++|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|
T Consensus 3 ~~~l~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~ 79 (257)
T PRK10619 3 ENKLNVIDLHKRYGE---HEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTINLVRDKDGQL 79 (257)
T ss_pred CccEEEeeeEEEECC---EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEccccccccccc
Confidence 357999999999963 4689999999999999999999999999999999999999999999887
Q ss_pred -------------eEEEEecCCCCcc-ccHHHHHhcCC----ccc----HHHHHHHHHHhcchhHHhcCCCCCccccCCC
Q psy1503 153 -------------TVSYASQEPWIFA-ATIRQNILFGL----PYL----RRRYADVIRVCALQDDFDSLPNGDFTVVGER 210 (265)
Q Consensus 153 -------------~i~~v~Q~~~l~~-~ti~eni~~~~----~~~----~~~~~~~~~~~~l~~~i~~l~~g~~t~vg~~ 210 (265)
.++|++|++.+++ .|++||+.++. ... .++..++++..++...+ ....
T Consensus 80 ~~~~~~~~~~~~~~i~~v~q~~~l~~~~sv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~----------~~~~ 149 (257)
T PRK10619 80 KVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKQEARERAVKYLAKVGIDERA----------QGKY 149 (257)
T ss_pred ccccchHHHHHhhceEEEecCcccCCCCcHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCChhh----------hhCC
Confidence 2799999999997 59999997642 111 12233334444443221 1345
Q ss_pred CCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHH
Q psy1503 211 GASLSGGQKARINLARAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGC 260 (265)
Q Consensus 211 g~~LSgGqrqRialARal~~~~~illLDEp~s~LD~~~~~~i~~~~i~~~ 260 (265)
..+||||||||++|||||+++|+++||||||++||+.+.+.+++ .+..+
T Consensus 150 ~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~-~l~~l 198 (257)
T PRK10619 150 PVHLSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLR-IMQQL 198 (257)
T ss_pred cccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHH-HHHHH
Confidence 67999999999999999999999999999999999999998865 44444
No 185
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=7e-37 Score=269.86 Aligned_cols=159 Identities=23% Similarity=0.380 Sum_probs=128.5
Q ss_pred cEEEEeEEEEeCCCCCCcceeeceEEEcCCcEEEEEcCCCChHHHHHHHHhcCcCC-----CccEEEEcCe---------
Q psy1503 88 HVSLDNVTAQWSLQNADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRI-----SSGKVSLGGT--------- 153 (265)
Q Consensus 88 ~i~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~-----~~G~i~~~g~--------- 153 (265)
.++++|++++|++ .++++|+||+|++|++++|+||||||||||+++|+|+++| ++|+|.++|.
T Consensus 3 ~l~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~ 79 (250)
T PRK14247 3 KIEIRDLKVSFGQ---VEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKMDVIE 79 (250)
T ss_pred eEEEEeeEEEECC---eeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECCEECCcCCHHH
Confidence 5899999999963 4689999999999999999999999999999999999974 7999999873
Q ss_pred ----EEEEecCCCCc-cccHHHHHhcCCcc-----c----HHHHHHHHHHhcchhHHhcCCCCCccccCCCCCCCCHHHH
Q psy1503 154 ----VSYASQEPWIF-AATIRQNILFGLPY-----L----RRRYADVIRVCALQDDFDSLPNGDFTVVGERGASLSGGQK 219 (265)
Q Consensus 154 ----i~~v~Q~~~l~-~~ti~eni~~~~~~-----~----~~~~~~~~~~~~l~~~i~~l~~g~~t~vg~~g~~LSgGqr 219 (265)
++|++|++.++ +.|+.||+.++... . .++..++++.+++.+.+. ........+||||||
T Consensus 80 ~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LSgG~~ 152 (250)
T PRK14247 80 LRRRVQMVFQIPNPIPNLSIFENVALGLKLNRLVKSKKELQERVRWALEKAQLWDEVK-------DRLDAPAGKLSGGQQ 152 (250)
T ss_pred HhccEEEEeccCccCCCCcHHHHHHHHHHhccccCCHHHHHHHHHHHHHHcCCCcchh-------hhhcCCcccCCHHHH
Confidence 89999999866 57999999875321 1 122334444444432211 123455678999999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHH
Q psy1503 220 ARINLARAVYKNADIYLLDDPLSAVDMHVGKHLFEDC 256 (265)
Q Consensus 220 qRialARal~~~~~illLDEp~s~LD~~~~~~i~~~~ 256 (265)
||++|||||+.+|+++||||||++||+.+...+.+..
T Consensus 153 qrv~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l 189 (250)
T PRK14247 153 QRLCIARALAFQPEVLLADEPTANLDPENTAKIESLF 189 (250)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHH
Confidence 9999999999999999999999999999999886633
No 186
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=1.7e-36 Score=261.98 Aligned_cols=161 Identities=22% Similarity=0.326 Sum_probs=130.7
Q ss_pred CcEEEEeEEEEeCCCCCCcceeeceEEEcCCcEEEEEcCCCChHHHHHHHHhcCcCCCccEEEEcCe----------EEE
Q psy1503 87 GHVSLDNVTAQWSLQNADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSLGGT----------VSY 156 (265)
Q Consensus 87 ~~i~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g~----------i~~ 156 (265)
..++++|++++|+. .++++++||+|++|++++|+||||||||||+++|+|+++|++|+|.++|. ++|
T Consensus 10 ~~l~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~i~~~~~~~~i~~ 86 (214)
T PRK13543 10 PLLAAHALAFSRNE---EPVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHVESGQIQIDGKTATRGDRSRFMAY 86 (214)
T ss_pred ceEEEeeEEEecCC---ceeeecceEEECCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCeeEEECCEEccchhhhhceEE
Confidence 46999999999963 45899999999999999999999999999999999999999999999983 899
Q ss_pred EecCCCCccc-cHHHHHhcCCcc----cHHHHHHHHHHhcchhHHhcCCCCCccccCCCCCCCCHHHHHHHHHHHHHccC
Q psy1503 157 ASQEPWIFAA-TIRQNILFGLPY----LRRRYADVIRVCALQDDFDSLPNGDFTVVGERGASLSGGQKARINLARAVYKN 231 (265)
Q Consensus 157 v~Q~~~l~~~-ti~eni~~~~~~----~~~~~~~~~~~~~l~~~i~~l~~g~~t~vg~~g~~LSgGqrqRialARal~~~ 231 (265)
++|++.+++. |++||+.++... ..++..+.++..++.+. ......+||||||||++||||++.+
T Consensus 87 ~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LS~G~~qrv~laral~~~ 155 (214)
T PRK13543 87 LGHLPGLKADLSTLENLHFLCGLHGRRAKQMPGSALAIVGLAGY-----------EDTLVRQLSAGQKKRLALARLWLSP 155 (214)
T ss_pred eecCcccccCCcHHHHHHHHHHhcCCcHHHHHHHHHHHcCChhh-----------ccCChhhCCHHHHHHHHHHHHHhcC
Confidence 9999988875 999999764221 12222333333333221 2345578999999999999999999
Q ss_pred CCEEEEeCCCCCcCHHHHHHHHHHHHHHHhh
Q psy1503 232 ADIYLLDDPLSAVDMHVGKHLFEDCISGCLT 262 (265)
Q Consensus 232 ~~illLDEp~s~LD~~~~~~i~~~~i~~~l~ 262 (265)
|+++||||||++||+.+.+.+.+ .+..+.+
T Consensus 156 p~llllDEPt~~LD~~~~~~l~~-~l~~~~~ 185 (214)
T PRK13543 156 APLWLLDEPYANLDLEGITLVNR-MISAHLR 185 (214)
T ss_pred CCEEEEeCCcccCCHHHHHHHHH-HHHHHHh
Confidence 99999999999999999987755 5544433
No 187
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=8.5e-37 Score=267.95 Aligned_cols=158 Identities=23% Similarity=0.387 Sum_probs=129.1
Q ss_pred cEEEEeEEEEeCCCCCCcceeeceEEEcCCcEEEEEcCCCChHHHHHHHHhcCcCCCccEEEEcC--------------e
Q psy1503 88 HVSLDNVTAQWSLQNADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSLGG--------------T 153 (265)
Q Consensus 88 ~i~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g--------------~ 153 (265)
+++++|++++|+. +++++|+||++++|++++|+||||||||||+++|+|+++|++|+|.++| .
T Consensus 3 ~l~~~~l~~~~~~---~~~l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 79 (241)
T PRK10895 3 TLTAKNLAKAYKG---RRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISLLPLHARARRG 79 (241)
T ss_pred eEEEeCcEEEeCC---EEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHHhC
Confidence 5899999999963 4699999999999999999999999999999999999999999999987 2
Q ss_pred EEEEecCCCCcc-ccHHHHHhcCCcc----cH----HHHHHHHHHhcchhHHhcCCCCCccccCCCCCCCCHHHHHHHHH
Q psy1503 154 VSYASQEPWIFA-ATIRQNILFGLPY----LR----RRYADVIRVCALQDDFDSLPNGDFTVVGERGASLSGGQKARINL 224 (265)
Q Consensus 154 i~~v~Q~~~l~~-~ti~eni~~~~~~----~~----~~~~~~~~~~~l~~~i~~l~~g~~t~vg~~g~~LSgGqrqRial 224 (265)
++|++|++.+++ .|+.||+.+.... +. .+..+.++..++ ..........||||||||++|
T Consensus 80 i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l-----------~~~~~~~~~~LS~G~~qrv~l 148 (241)
T PRK10895 80 IGYLPQEASIFRRLSVYDNLMAVLQIRDDLSAEQREDRANELMEEFHI-----------EHLRDSMGQSLSGGERRRVEI 148 (241)
T ss_pred eEEeccCCcccccCcHHHHHhhhhhcccccCHHHHHHHHHHHHHHcCC-----------HHHhhcchhhCCHHHHHHHHH
Confidence 899999999887 5999999875321 11 122223333322 223345667999999999999
Q ss_pred HHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHH
Q psy1503 225 ARAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGC 260 (265)
Q Consensus 225 ARal~~~~~illLDEp~s~LD~~~~~~i~~~~i~~~ 260 (265)
|||++.+|+++||||||++||+.+...+.+ .+..+
T Consensus 149 aral~~~p~llllDEPt~~LD~~~~~~l~~-~l~~~ 183 (241)
T PRK10895 149 ARALAANPKFILLDEPFAGVDPISVIDIKR-IIEHL 183 (241)
T ss_pred HHHHhcCCCEEEEcCCcccCCHHHHHHHHH-HHHHH
Confidence 999999999999999999999999988754 44443
No 188
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=100.00 E-value=8.1e-37 Score=269.87 Aligned_cols=158 Identities=23% Similarity=0.406 Sum_probs=129.0
Q ss_pred EEEEeEEEEeCCCCCCcceeeceEEEcCCcEEEEEcCCCChHHHHHHHHhcCcCCCccEEEEcC----------------
Q psy1503 89 VSLDNVTAQWSLQNADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSLGG---------------- 152 (265)
Q Consensus 89 i~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g---------------- 152 (265)
|+++|++++|+. .++++|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|
T Consensus 1 i~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~ 77 (252)
T TIGR03005 1 VRFSDVTKRFGI---LTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPIDEGQIQVEGEQLYHMPGRNGPLVPA 77 (252)
T ss_pred CEEEEEEEEeCC---eeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccccccccccccc
Confidence 478999999963 4689999999999999999999999999999999999999999999876
Q ss_pred ----------eEEEEecCCCCcc-ccHHHHHhcCCc----cc----HHHHHHHHHHhcchhHHhcCCCCCccccCCCCCC
Q psy1503 153 ----------TVSYASQEPWIFA-ATIRQNILFGLP----YL----RRRYADVIRVCALQDDFDSLPNGDFTVVGERGAS 213 (265)
Q Consensus 153 ----------~i~~v~Q~~~l~~-~ti~eni~~~~~----~~----~~~~~~~~~~~~l~~~i~~l~~g~~t~vg~~g~~ 213 (265)
.++|++|++.+|+ .|+.||+.++.. .. .+++.++++..++.+. ......+
T Consensus 78 ~~~~~~~~~~~i~~v~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~-----------~~~~~~~ 146 (252)
T TIGR03005 78 DEKHLRQMRNKIGMVFQSFNLFPHKTVLDNVTEAPVLVLGMARAEAEKRAMELLDMVGLADK-----------ADHMPAQ 146 (252)
T ss_pred chhHHHHHhhCeEEEecCcccCCCCcHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhH-----------hhcChhh
Confidence 2899999999886 699999987421 11 1223344444444333 3345578
Q ss_pred CCHHHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHHh
Q psy1503 214 LSGGQKARINLARAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGCL 261 (265)
Q Consensus 214 LSgGqrqRialARal~~~~~illLDEp~s~LD~~~~~~i~~~~i~~~l 261 (265)
||||||||++|||||+.+|+++||||||++||+.+...+++ .+..+.
T Consensus 147 LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~-~l~~~~ 193 (252)
T TIGR03005 147 LSGGQQQRVAIARALAMRPKVMLFDEVTSALDPELVGEVLN-VIRRLA 193 (252)
T ss_pred cCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHH-HHHHHH
Confidence 99999999999999999999999999999999999888754 444443
No 189
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=8.6e-37 Score=269.30 Aligned_cols=162 Identities=25% Similarity=0.382 Sum_probs=130.7
Q ss_pred cEEEEeEEEEeCCCCCCcceeeceEEEcCCcEEEEEcCCCChHHHHHHHHhcCcCC-----CccEEEEcC----------
Q psy1503 88 HVSLDNVTAQWSLQNADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRI-----SSGKVSLGG---------- 152 (265)
Q Consensus 88 ~i~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~-----~~G~i~~~g---------- 152 (265)
.++++|+++.|+. .++++|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|
T Consensus 3 ~l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~ 79 (250)
T PRK14240 3 KISVKDLDLFYGD---FQALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSDIDV 79 (250)
T ss_pred eEEEEEEEEEECC---ceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccch
Confidence 5899999999963 4689999999999999999999999999999999998763 699999986
Q ss_pred -----eEEEEecCCCCccccHHHHHhcCCcc----c----HHHHHHHHHHhcchhHHhcCCCCCccccCCCCCCCCHHHH
Q psy1503 153 -----TVSYASQEPWIFAATIRQNILFGLPY----L----RRRYADVIRVCALQDDFDSLPNGDFTVVGERGASLSGGQK 219 (265)
Q Consensus 153 -----~i~~v~Q~~~l~~~ti~eni~~~~~~----~----~~~~~~~~~~~~l~~~i~~l~~g~~t~vg~~g~~LSgGqr 219 (265)
.++|++|++.+|+.|++||+.++... . .++..++++.+++.+.+. ......+.+||||||
T Consensus 80 ~~~~~~i~~~~q~~~~~~~t~~~ni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~-------~~~~~~~~~LS~G~~ 152 (250)
T PRK14240 80 NQLRKRVGMVFQQPNPFPMSIYDNVAYGPRTHGIKDKKKLDEIVEKSLKGAALWDEVK-------DRLKKSALGLSGGQQ 152 (250)
T ss_pred HHHhccEEEEecCCccCcccHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhH-------HHHhcCCCCCCHHHH
Confidence 28999999999989999999875311 1 122333444444432221 123456779999999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHH
Q psy1503 220 ARINLARAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGC 260 (265)
Q Consensus 220 qRialARal~~~~~illLDEp~s~LD~~~~~~i~~~~i~~~ 260 (265)
||++|||||+.+|+++||||||++||+.+...+.+ ++..+
T Consensus 153 qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~-~l~~~ 192 (250)
T PRK14240 153 QRLCIARALAVEPEVLLMDEPTSALDPISTLKIEE-LIQEL 192 (250)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHH-HHHHH
Confidence 99999999999999999999999999999988754 55544
No 190
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=7.6e-37 Score=275.52 Aligned_cols=164 Identities=26% Similarity=0.463 Sum_probs=129.1
Q ss_pred CcEEEEeEEEEeCCCC--CCcceeeceEEEcCCcEEEEEcCCCChHHHHHHHHhcCcCCCccEEEEcC------------
Q psy1503 87 GHVSLDNVTAQWSLQN--ADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSLGG------------ 152 (265)
Q Consensus 87 ~~i~~~~~~~~~~~~~--~~~~l~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g------------ 152 (265)
+.|+++|++++|+... ..++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|
T Consensus 5 ~~l~i~nl~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~ 84 (289)
T PRK13645 5 KDIILDNVSYTYAKKTPFEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQTIVGDYAIPANLKKIKE 84 (289)
T ss_pred ceEEEEEEEEEeCCCCccccceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEcccccccccc
Confidence 4689999999996421 13589999999999999999999999999999999999999999998876
Q ss_pred ------eEEEEecCCC--CccccHHHHHhcCCc---ccHH----HHHHHHHHhcchhHHhcCCCCCccccCCCCCCCCHH
Q psy1503 153 ------TVSYASQEPW--IFAATIRQNILFGLP---YLRR----RYADVIRVCALQDDFDSLPNGDFTVVGERGASLSGG 217 (265)
Q Consensus 153 ------~i~~v~Q~~~--l~~~ti~eni~~~~~---~~~~----~~~~~~~~~~l~~~i~~l~~g~~t~vg~~g~~LSgG 217 (265)
.++|++|++. +++.|++||+.++.. ...+ +..++++..++ +. ........+||||
T Consensus 85 ~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~ll~~~~L-------~~---~~~~~~~~~LS~G 154 (289)
T PRK13645 85 VKRLRKEIGLVFQFPEYQLFQETIEKDIAFGPVNLGENKQEAYKKVPELLKLVQL-------PE---DYVKRSPFELSGG 154 (289)
T ss_pred HHHHhccEEEEEeCcchhhhhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCC-------Ch---hHhcCChhhCCHH
Confidence 2799999984 567899999987532 1111 11222222222 11 1233566799999
Q ss_pred HHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHHh
Q psy1503 218 QKARINLARAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGCL 261 (265)
Q Consensus 218 qrqRialARal~~~~~illLDEp~s~LD~~~~~~i~~~~i~~~l 261 (265)
||||++|||||+.+|+++||||||++||+.+.+.+++ .+..+.
T Consensus 155 q~qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~-~l~~~~ 197 (289)
T PRK13645 155 QKRRVALAGIIAMDGNTLVLDEPTGGLDPKGEEDFIN-LFERLN 197 (289)
T ss_pred HHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHH-HHHHHH
Confidence 9999999999999999999999999999999988755 444443
No 191
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=100.00 E-value=1.4e-36 Score=269.72 Aligned_cols=159 Identities=27% Similarity=0.379 Sum_probs=130.6
Q ss_pred cEEEEeEEEEeCCCCCCcceeeceEEEcCCcEEEEEcCCCChHHHHHHHHhcCcCCCccEEEEcCe-------------E
Q psy1503 88 HVSLDNVTAQWSLQNADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSLGGT-------------V 154 (265)
Q Consensus 88 ~i~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g~-------------i 154 (265)
+++++|++++|+. .++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|. +
T Consensus 2 ~l~~~~l~~~~~~---~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~G~i~~~g~~~~~~~~~~~~~~i 78 (258)
T PRK13548 2 MLEARNLSVRLGG---RTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEVRLNGRPLADWSPAELARRR 78 (258)
T ss_pred eEEEEeEEEEeCC---eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcccCCHHHhhhhe
Confidence 4889999999963 46899999999999999999999999999999999999999999999883 8
Q ss_pred EEEecCCCCc-cccHHHHHhcCCc-c------cHHHHHHHHHHhcchhHHhcCCCCCccccCCCCCCCCHHHHHHHHHHH
Q psy1503 155 SYASQEPWIF-AATIRQNILFGLP-Y------LRRRYADVIRVCALQDDFDSLPNGDFTVVGERGASLSGGQKARINLAR 226 (265)
Q Consensus 155 ~~v~Q~~~l~-~~ti~eni~~~~~-~------~~~~~~~~~~~~~l~~~i~~l~~g~~t~vg~~g~~LSgGqrqRialAR 226 (265)
+|++|++.++ +.|++||+.++.. . ..++..++++..++.... .....+||||||||++|||
T Consensus 79 ~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LSgGe~qrv~la~ 147 (258)
T PRK13548 79 AVLPQHSSLSFPFTVEEVVAMGRAPHGLSRAEDDALVAAALAQVDLAHLA-----------GRDYPQLSGGEQQRVQLAR 147 (258)
T ss_pred EEEccCCcCCCCCCHHHHHHhhhcccCCCcHHHHHHHHHHHHHcCCHhHh-----------cCCcccCCHHHHHHHHHHH
Confidence 9999999874 5799999987532 1 112334445555554332 3345799999999999999
Q ss_pred HHc------cCCCEEEEeCCCCCcCHHHHHHHHHHHHHHHh
Q psy1503 227 AVY------KNADIYLLDDPLSAVDMHVGKHLFEDCISGCL 261 (265)
Q Consensus 227 al~------~~~~illLDEp~s~LD~~~~~~i~~~~i~~~l 261 (265)
||+ .+|+++||||||++||+.+...+.+ .+..+.
T Consensus 148 al~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~-~l~~~~ 187 (258)
T PRK13548 148 VLAQLWEPDGPPRWLLLDEPTSALDLAHQHHVLR-LARQLA 187 (258)
T ss_pred HHhcccccCCCCCEEEEeCCcccCCHHHHHHHHH-HHHHHH
Confidence 999 5999999999999999999988754 454443
No 192
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=7.9e-37 Score=272.97 Aligned_cols=158 Identities=25% Similarity=0.352 Sum_probs=128.2
Q ss_pred cEEEEeEEEEeCCCCCCcceeeceEEEcCCcEEEEEcCCCChHHHHHHHHhcCcCCCccEEEEcCe--------------
Q psy1503 88 HVSLDNVTAQWSLQNADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSLGGT-------------- 153 (265)
Q Consensus 88 ~i~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g~-------------- 153 (265)
+++++|++++|+. .++++++||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.
T Consensus 1 ml~~~~l~~~~~~---~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~ 77 (271)
T PRK13638 1 MLATSDLWFRYQD---EPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKPLDYSKRGLLALRQ 77 (271)
T ss_pred CeEEEEEEEEcCC---cccccceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCccEEEECCEEcccccCCHHHHHh
Confidence 3789999999963 46899999999999999999999999999999999999999999999772
Q ss_pred -EEEEecCCC--CccccHHHHHhcCCc---ccH----HHHHHHHHHhcchhHHhcCCCCCccccCCCCCCCCHHHHHHHH
Q psy1503 154 -VSYASQEPW--IFAATIRQNILFGLP---YLR----RRYADVIRVCALQDDFDSLPNGDFTVVGERGASLSGGQKARIN 223 (265)
Q Consensus 154 -i~~v~Q~~~--l~~~ti~eni~~~~~---~~~----~~~~~~~~~~~l~~~i~~l~~g~~t~vg~~g~~LSgGqrqRia 223 (265)
++|++|++. ++..|+.+|+.++.. ... +++.++++..++.+.. .....+||||||||++
T Consensus 78 ~i~~v~q~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LSgG~~qrl~ 146 (271)
T PRK13638 78 QVATVFQDPEQQIFYTDIDSDIAFSLRNLGVPEAEITRRVDEALTLVDAQHFR-----------HQPIQCLSHGQKKRVA 146 (271)
T ss_pred heEEEeeChhhccccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHhHh-----------cCCchhCCHHHHHHHH
Confidence 899999985 456789999986421 111 2233444444443322 2345789999999999
Q ss_pred HHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHH
Q psy1503 224 LARAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGC 260 (265)
Q Consensus 224 lARal~~~~~illLDEp~s~LD~~~~~~i~~~~i~~~ 260 (265)
|||||+.+|+++||||||++||+.+...+++ .+..+
T Consensus 147 laraL~~~p~lllLDEPt~~LD~~~~~~l~~-~l~~~ 182 (271)
T PRK13638 147 IAGALVLQARYLLLDEPTAGLDPAGRTQMIA-IIRRI 182 (271)
T ss_pred HHHHHHcCCCEEEEeCCcccCCHHHHHHHHH-HHHHH
Confidence 9999999999999999999999999988865 44444
No 193
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.1e-36 Score=273.13 Aligned_cols=162 Identities=25% Similarity=0.380 Sum_probs=132.5
Q ss_pred cEEEEeEEEEeCCCCCCcceeeceEEEcCCcEEEEEcCCCChHHHHHHHHhcCcCCCccEEEEcCe-------------E
Q psy1503 88 HVSLDNVTAQWSLQNADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSLGGT-------------V 154 (265)
Q Consensus 88 ~i~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g~-------------i 154 (265)
.++++|++++|+.....++|+|+||+|++|++++|+|+||||||||+++|+|+++|++|+|.++|. +
T Consensus 4 ~l~~~~l~~~~~~~~~~~~l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~i 83 (277)
T PRK13642 4 ILEVENLVFKYEKESDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKVKIDGELLTAENVWNLRRKI 83 (277)
T ss_pred eEEEEEEEEEcCCCCcCeeeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEECCcCCHHHHhcce
Confidence 689999999997432345899999999999999999999999999999999999999999999873 8
Q ss_pred EEEecCCC--CccccHHHHHhcCCc---ccH----HHHHHHHHHhcchhHHhcCCCCCccccCCCCCCCCHHHHHHHHHH
Q psy1503 155 SYASQEPW--IFAATIRQNILFGLP---YLR----RRYADVIRVCALQDDFDSLPNGDFTVVGERGASLSGGQKARINLA 225 (265)
Q Consensus 155 ~~v~Q~~~--l~~~ti~eni~~~~~---~~~----~~~~~~~~~~~l~~~i~~l~~g~~t~vg~~g~~LSgGqrqRialA 225 (265)
+|++|++. +++.|+.|||.++.. ... +++.++++.+++.+... .....||||||||++||
T Consensus 84 ~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~qrv~lA 152 (277)
T PRK13642 84 GMVFQNPDNQFVGATVEDDVAFGMENQGIPREEMIKRVDEALLAVNMLDFKT-----------REPARLSGGQKQRVAVA 152 (277)
T ss_pred EEEEECHHHhhccCCHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHhHhh-----------CCcccCCHHHHHHHHHH
Confidence 99999984 556899999987521 111 23344555555544332 34568999999999999
Q ss_pred HHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHHh
Q psy1503 226 RAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGCL 261 (265)
Q Consensus 226 Ral~~~~~illLDEp~s~LD~~~~~~i~~~~i~~~l 261 (265)
|||+.+|+++||||||++||+.+...+.+ .+..+-
T Consensus 153 raL~~~p~llllDEPt~~LD~~~~~~l~~-~l~~l~ 187 (277)
T PRK13642 153 GIIALRPEIIILDESTSMLDPTGRQEIMR-VIHEIK 187 (277)
T ss_pred HHHHcCCCEEEEeCCcccCCHHHHHHHHH-HHHHHH
Confidence 99999999999999999999999998865 444443
No 194
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.3e-36 Score=272.59 Aligned_cols=159 Identities=26% Similarity=0.396 Sum_probs=131.1
Q ss_pred cEEEEeEEEEeCCCCCCcceeeceEEEcCCcEEEEEcCCCChHHHHHHHHhcCcCCCccEEEEcCe-------------E
Q psy1503 88 HVSLDNVTAQWSLQNADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSLGGT-------------V 154 (265)
Q Consensus 88 ~i~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g~-------------i 154 (265)
.++++|++++|+.. .++|+|+||+|++|++++|+|+||||||||+++|+|+++|++|+|.++|. +
T Consensus 3 ~l~~~~l~~~~~~~--~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i 80 (277)
T PRK13652 3 LIETRDLCYSYSGS--KEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVLIRGEPITKENIREVRKFV 80 (277)
T ss_pred eEEEEEEEEEeCCC--CceeeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhhe
Confidence 58899999999532 35899999999999999999999999999999999999999999999873 8
Q ss_pred EEEecCCC--CccccHHHHHhcCCc---ccH----HHHHHHHHHhcchhHHhcCCCCCccccCCCCCCCCHHHHHHHHHH
Q psy1503 155 SYASQEPW--IFAATIRQNILFGLP---YLR----RRYADVIRVCALQDDFDSLPNGDFTVVGERGASLSGGQKARINLA 225 (265)
Q Consensus 155 ~~v~Q~~~--l~~~ti~eni~~~~~---~~~----~~~~~~~~~~~l~~~i~~l~~g~~t~vg~~g~~LSgGqrqRialA 225 (265)
+|++|++. +++.|+.||+.++.. .+. +++.++++.+++.+.+. .....||||||||++||
T Consensus 81 ~~v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~Gq~qrl~la 149 (277)
T PRK13652 81 GLVFQNPDDQIFSPTVEQDIAFGPINLGLDEETVAHRVSSALHMLGLEELRD-----------RVPHHLSGGEKKRVAIA 149 (277)
T ss_pred EEEecCcccccccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhHhc-----------CCcccCCHHHHHHHHHH
Confidence 99999973 667899999986431 121 23445555555554433 33468999999999999
Q ss_pred HHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHH
Q psy1503 226 RAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGC 260 (265)
Q Consensus 226 Ral~~~~~illLDEp~s~LD~~~~~~i~~~~i~~~ 260 (265)
|||+.+|+++||||||++||+.+...+++ .+..+
T Consensus 150 raL~~~p~llilDEPt~gLD~~~~~~l~~-~l~~l 183 (277)
T PRK13652 150 GVIAMEPQVLVLDEPTAGLDPQGVKELID-FLNDL 183 (277)
T ss_pred HHHHcCCCEEEEeCCcccCCHHHHHHHHH-HHHHH
Confidence 99999999999999999999999988755 44443
No 195
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.2e-36 Score=269.95 Aligned_cols=163 Identities=23% Similarity=0.387 Sum_probs=130.9
Q ss_pred CcEEEEeEEEEeCCCCCCcceeeceEEEcCCcEEEEEcCCCChHHHHHHHHhcCcC--C---CccEEEEcCe--------
Q psy1503 87 GHVSLDNVTAQWSLQNADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELR--I---SSGKVSLGGT-------- 153 (265)
Q Consensus 87 ~~i~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~--~---~~G~i~~~g~-------- 153 (265)
..|+++|+++.|+. .++|+|+||+|++|++++|+||||||||||+++|+|+++ | ++|+|.++|.
T Consensus 11 ~~l~i~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g~~~~~~~~~ 87 (259)
T PRK14274 11 EVYQINGMNLWYGQ---HHALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGKVD 87 (259)
T ss_pred ceEEEeeEEEEECC---eeeEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECCEEccccccC
Confidence 47999999999963 468999999999999999999999999999999999987 3 5899998762
Q ss_pred -------EEEEecCCCCccccHHHHHhcCCcc----cHH----HHHHHHHHhcchhHHhcCCCCCccccCCCCCCCCHHH
Q psy1503 154 -------VSYASQEPWIFAATIRQNILFGLPY----LRR----RYADVIRVCALQDDFDSLPNGDFTVVGERGASLSGGQ 218 (265)
Q Consensus 154 -------i~~v~Q~~~l~~~ti~eni~~~~~~----~~~----~~~~~~~~~~l~~~i~~l~~g~~t~vg~~g~~LSgGq 218 (265)
++|++|++.+|+.|++||+.++... ..+ +..++++..++.+.+. +.....+.+|||||
T Consensus 88 ~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~l~~~~~~LS~Gq 160 (259)
T PRK14274 88 LVELRKNIGMVFQKGNPFPQSIFDNVAYGPRIHGTKNKKKLQEIVEKSLKDVALWDEVK-------DRLHTQALSLSGGQ 160 (259)
T ss_pred HHHHhhceEEEecCCcccccCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhh-------hhhhCCcccCCHHH
Confidence 8999999999988999999875321 111 2223333444432221 22345678999999
Q ss_pred HHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHH
Q psy1503 219 KARINLARAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGC 260 (265)
Q Consensus 219 rqRialARal~~~~~illLDEp~s~LD~~~~~~i~~~~i~~~ 260 (265)
|||++||||++.+|+++||||||++||+.+...+.+ ++..+
T Consensus 161 ~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~-~l~~~ 201 (259)
T PRK14274 161 QQRLCIARALATNPDVLLMDEPTSALDPVSTRKIEE-LILKL 201 (259)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHH-HHHHH
Confidence 999999999999999999999999999999988754 55544
No 196
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=100.00 E-value=4.9e-37 Score=260.29 Aligned_cols=145 Identities=28% Similarity=0.437 Sum_probs=119.0
Q ss_pred CcceeeceEEEcCCcEEEEEcCCCChHHHHHHHHhcCcCCCccEEEEcCe---------------EEEEecCC--CCccc
Q psy1503 104 DLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSLGGT---------------VSYASQEP--WIFAA 166 (265)
Q Consensus 104 ~~~l~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g~---------------i~~v~Q~~--~l~~~ 166 (265)
..+|+++||+|++|++++|+||||||||||+++|+|+++|++|+|.++|. ++|++|++ .+|+.
T Consensus 5 ~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~ 84 (190)
T TIGR01166 5 PEVLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGEPLDYSRKGLLERRQRVGLVFQDPDDQLFAA 84 (190)
T ss_pred cceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceeEEECCEEccccccchHHHHhhEEEEecChhhccccc
Confidence 46899999999999999999999999999999999999999999998872 79999998 46778
Q ss_pred cHHHHHhcCCc---ccH----HHHHHHHHHhcchhHHhcCCCCCccccCCCCCCCCHHHHHHHHHHHHHccCCCEEEEeC
Q psy1503 167 TIRQNILFGLP---YLR----RRYADVIRVCALQDDFDSLPNGDFTVVGERGASLSGGQKARINLARAVYKNADIYLLDD 239 (265)
Q Consensus 167 ti~eni~~~~~---~~~----~~~~~~~~~~~l~~~i~~l~~g~~t~vg~~g~~LSgGqrqRialARal~~~~~illLDE 239 (265)
|++||+.++.. ... ++..++++..++.+..+ ....+||||||||++|||||+.+|+++||||
T Consensus 85 tv~~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~qrv~laral~~~p~llllDE 153 (190)
T TIGR01166 85 DVDQDVAFGPLNLGLSEAEVERRVREALTAVGASGLRE-----------RPTHCLSGGEKKRVAIAGAVAMRPDVLLLDE 153 (190)
T ss_pred cHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCchhhhh-----------CChhhCCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 99999987421 111 23344445555543332 3456899999999999999999999999999
Q ss_pred CCCCcCHHHHHHHHHHHHHHH
Q psy1503 240 PLSAVDMHVGKHLFEDCISGC 260 (265)
Q Consensus 240 p~s~LD~~~~~~i~~~~i~~~ 260 (265)
||++||+.+.+.+.+ .+..+
T Consensus 154 Pt~~LD~~~~~~~~~-~l~~~ 173 (190)
T TIGR01166 154 PTAGLDPAGREQMLA-ILRRL 173 (190)
T ss_pred CcccCCHHHHHHHHH-HHHHH
Confidence 999999999988865 44444
No 197
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=100.00 E-value=6.7e-37 Score=277.56 Aligned_cols=158 Identities=22% Similarity=0.378 Sum_probs=130.6
Q ss_pred cEEEEeEEEEeCCCCCCcceeeceEEEcCCcEEEEEcCCCChHHHHHHHHhcCcCCCccEEEEcCe------------EE
Q psy1503 88 HVSLDNVTAQWSLQNADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSLGGT------------VS 155 (265)
Q Consensus 88 ~i~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g~------------i~ 155 (265)
.++++|++++|+. ..+|+|+||++++|++++|+||||||||||+++|+|+++|++|+|.++|. ++
T Consensus 2 ~l~~~~l~~~~~~---~~~l~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~~~~G~i~i~g~~~~~~~~~~~~~ig 78 (301)
T TIGR03522 2 SIRVSSLTKLYGT---QNALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPDSGSVQVCGEDVLQNPKEVQRNIG 78 (301)
T ss_pred EEEEEEEEEEECC---EEEEEEeEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccChHHHHhceE
Confidence 3789999999963 46999999999999999999999999999999999999999999999883 89
Q ss_pred EEecCCCCccc-cHHHHHhcCCc---cc----HHHHHHHHHHhcchhHHhcCCCCCccccCCCCCCCCHHHHHHHHHHHH
Q psy1503 156 YASQEPWIFAA-TIRQNILFGLP---YL----RRRYADVIRVCALQDDFDSLPNGDFTVVGERGASLSGGQKARINLARA 227 (265)
Q Consensus 156 ~v~Q~~~l~~~-ti~eni~~~~~---~~----~~~~~~~~~~~~l~~~i~~l~~g~~t~vg~~g~~LSgGqrqRialARa 227 (265)
|+||++.+++. |+.||+.+... .. .++..++++..++.+ .......+||||||||++||||
T Consensus 79 ~~~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~-----------~~~~~~~~LS~G~~qrv~la~a 147 (301)
T TIGR03522 79 YLPEHNPLYLDMYVREYLQFIAGIYGMKGQLLKQRVEEMIELVGLRP-----------EQHKKIGQLSKGYRQRVGLAQA 147 (301)
T ss_pred EecCCCCCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCch-----------HhcCchhhCCHHHHHHHHHHHH
Confidence 99999999975 99999975321 11 123334444444432 2345567899999999999999
Q ss_pred HccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHH
Q psy1503 228 VYKNADIYLLDDPLSAVDMHVGKHLFEDCISGC 260 (265)
Q Consensus 228 l~~~~~illLDEp~s~LD~~~~~~i~~~~i~~~ 260 (265)
|+++|+++||||||++||+.+.+.+++ .+..+
T Consensus 148 l~~~p~lliLDEPt~gLD~~~~~~l~~-~l~~~ 179 (301)
T TIGR03522 148 LIHDPKVLILDEPTTGLDPNQLVEIRN-VIKNI 179 (301)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHH-HHHHh
Confidence 999999999999999999999998866 44444
No 198
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.1e-36 Score=268.84 Aligned_cols=162 Identities=26% Similarity=0.459 Sum_probs=129.9
Q ss_pred cEEEEeEEEEeCCCCCCcceeeceEEEcCCcEEEEEcCCCChHHHHHHHHhcCc--CC---CccEEEEcC----------
Q psy1503 88 HVSLDNVTAQWSLQNADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNEL--RI---SSGKVSLGG---------- 152 (265)
Q Consensus 88 ~i~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~g~~--~~---~~G~i~~~g---------- 152 (265)
.++++|++++|+. .++++++||+|++|++++|+||||||||||+++|+|+. .| ++|+|.++|
T Consensus 5 ~l~~~~l~~~~~~---~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i~~~g~~~~~~~~~~ 81 (252)
T PRK14239 5 ILQVSDLSVYYNK---KKALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYSPRTDT 81 (252)
T ss_pred eEEEEeeEEEECC---eeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcccccCCCCCccceEEECCEECcCcccch
Confidence 6899999999963 46899999999999999999999999999999999985 46 589999886
Q ss_pred -----eEEEEecCCCCccccHHHHHhcCCc---c-cH----HHHHHHHHHhcchhHHhcCCCCCccccCCCCCCCCHHHH
Q psy1503 153 -----TVSYASQEPWIFAATIRQNILFGLP---Y-LR----RRYADVIRVCALQDDFDSLPNGDFTVVGERGASLSGGQK 219 (265)
Q Consensus 153 -----~i~~v~Q~~~l~~~ti~eni~~~~~---~-~~----~~~~~~~~~~~l~~~i~~l~~g~~t~vg~~g~~LSgGqr 219 (265)
.++|++|++.+|+.|++||+.++.. . .. ++..++++.+++...+. +.......+||||||
T Consensus 82 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LS~G~~ 154 (252)
T PRK14239 82 VDLRKEIGMVFQQPNPFPMSIYENVVYGLRLKGIKDKQVLDEAVEKSLKGASIWDEVK-------DRLHDSALGLSGGQQ 154 (252)
T ss_pred HhhhhcEEEEecCCccCcCcHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCchhHH-------HHHhcCcccCCHHHH
Confidence 2899999999999999999986421 1 11 12223344444322221 234456789999999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHH
Q psy1503 220 ARINLARAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGC 260 (265)
Q Consensus 220 qRialARal~~~~~illLDEp~s~LD~~~~~~i~~~~i~~~ 260 (265)
||++|||||+.+|+++||||||++||+.+...+++ .+..+
T Consensus 155 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~-~l~~~ 194 (252)
T PRK14239 155 QRVCIARVLATSPKIILLDEPTSALDPISAGKIEE-TLLGL 194 (252)
T ss_pred HHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHH-HHHHH
Confidence 99999999999999999999999999999988865 44444
No 199
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.7e-36 Score=264.80 Aligned_cols=155 Identities=32% Similarity=0.483 Sum_probs=129.2
Q ss_pred EEEEeEEEEeCCCCCCcceeeceEEEcCCcEEEEEcCCCChHHHHHHHHhcCcCCCccEEEEcCe-----------EEEE
Q psy1503 89 VSLDNVTAQWSLQNADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSLGGT-----------VSYA 157 (265)
Q Consensus 89 i~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g~-----------i~~v 157 (265)
++++|++++|+. . ..++||+|++|++++|+||||||||||+++|+|+++|++|+|.++|. ++|+
T Consensus 2 l~~~~l~~~~~~---~--~~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i~~~ 76 (232)
T PRK10771 2 LKLTDITWLYHH---L--PMRFDLTVERGERVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQDHTTTPPSRRPVSML 76 (232)
T ss_pred eEEEEEEEEECC---c--cceeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCeecCcCChhhccEEEE
Confidence 789999999963 2 23899999999999999999999999999999999999999999873 8999
Q ss_pred ecCCCCccc-cHHHHHhcCCcc-------cHHHHHHHHHHhcchhHHhcCCCCCccccCCCCCCCCHHHHHHHHHHHHHc
Q psy1503 158 SQEPWIFAA-TIRQNILFGLPY-------LRRRYADVIRVCALQDDFDSLPNGDFTVVGERGASLSGGQKARINLARAVY 229 (265)
Q Consensus 158 ~Q~~~l~~~-ti~eni~~~~~~-------~~~~~~~~~~~~~l~~~i~~l~~g~~t~vg~~g~~LSgGqrqRialARal~ 229 (265)
+|++.+|+. |+.||+.++... ..++..++++..++.+.++.. ...||||||||++||||++
T Consensus 77 ~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~LS~G~~qrv~laral~ 145 (232)
T PRK10771 77 FQENNLFSHLTVAQNIGLGLNPGLKLNAAQREKLHAIARQMGIEDLLARL-----------PGQLSGGQRQRVALARCLV 145 (232)
T ss_pred ecccccccCCcHHHHHhcccccccCCCHHHHHHHHHHHHHcCcHHHHhCC-----------cccCCHHHHHHHHHHHHHh
Confidence 999999875 999999875311 123445566666665554443 3589999999999999999
Q ss_pred cCCCEEEEeCCCCCcCHHHHHHHHHHHHHHH
Q psy1503 230 KNADIYLLDDPLSAVDMHVGKHLFEDCISGC 260 (265)
Q Consensus 230 ~~~~illLDEp~s~LD~~~~~~i~~~~i~~~ 260 (265)
++|+++||||||++||+.+...+++ .+..+
T Consensus 146 ~~p~lllLDEP~~gLD~~~~~~~~~-~l~~~ 175 (232)
T PRK10771 146 REQPILLLDEPFSALDPALRQEMLT-LVSQV 175 (232)
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHH-HHHHH
Confidence 9999999999999999999988755 44444
No 200
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=9.1e-37 Score=270.67 Aligned_cols=163 Identities=26% Similarity=0.392 Sum_probs=131.3
Q ss_pred CcEEEEeEEEEeCCCCCCcceeeceEEEcCCcEEEEEcCCCChHHHHHHHHhcCcCC-----CccEEEEcCe--------
Q psy1503 87 GHVSLDNVTAQWSLQNADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRI-----SSGKVSLGGT-------- 153 (265)
Q Consensus 87 ~~i~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~-----~~G~i~~~g~-------- 153 (265)
..++++|+++.|+. .++|+|+||+|++|++++|+|+||||||||+++|+|+++| ++|+|.++|.
T Consensus 11 ~~l~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~ 87 (258)
T PRK14268 11 PQIKVENLNLWYGE---KQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIYEPDVD 87 (258)
T ss_pred eeEEEeeeEEEeCC---eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEECCEEcccccch
Confidence 47999999999963 4689999999999999999999999999999999999985 7999998762
Q ss_pred -------EEEEecCCCCccccHHHHHhcCCc---ccH----HHHHHHHHHhcchhHHhcCCCCCccccCCCCCCCCHHHH
Q psy1503 154 -------VSYASQEPWIFAATIRQNILFGLP---YLR----RRYADVIRVCALQDDFDSLPNGDFTVVGERGASLSGGQK 219 (265)
Q Consensus 154 -------i~~v~Q~~~l~~~ti~eni~~~~~---~~~----~~~~~~~~~~~l~~~i~~l~~g~~t~vg~~g~~LSgGqr 219 (265)
++|++|++.+|+.|++||+.++.. ... ++..++++.+++...+ .........+||||||
T Consensus 88 ~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~~~~~~~LSgG~~ 160 (258)
T PRK14268 88 VVELRKNVGMVFQKPNPFPMSIYDNVAYGPRIHGANKKDLDGVVENALRSAALWDET-------SDRLKSPALSLSGGQQ 160 (258)
T ss_pred HHHHhhhEEEEecCCccCcccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcch-------hhhhcCChhhCCHHHH
Confidence 899999999999999999987531 111 1233344444442211 1223456779999999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHH
Q psy1503 220 ARINLARAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGC 260 (265)
Q Consensus 220 qRialARal~~~~~illLDEp~s~LD~~~~~~i~~~~i~~~ 260 (265)
||++|||||+.+|+++||||||++||+.+...+++ .+..+
T Consensus 161 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~-~l~~l 200 (258)
T PRK14268 161 QRLCIARTLAVKPKIILFDEPTSALDPISTARIED-LIMNL 200 (258)
T ss_pred HHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHH-HHHHH
Confidence 99999999999999999999999999999988755 44443
No 201
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=8.9e-37 Score=269.31 Aligned_cols=162 Identities=27% Similarity=0.423 Sum_probs=130.3
Q ss_pred cEEEEeEEEEeCCCCCCcceeeceEEEcCCcEEEEEcCCCChHHHHHHHHhcC---cCC--CccEEEEcCe---------
Q psy1503 88 HVSLDNVTAQWSLQNADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNE---LRI--SSGKVSLGGT--------- 153 (265)
Q Consensus 88 ~i~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~g~---~~~--~~G~i~~~g~--------- 153 (265)
+++++|+++.|+. .++++|+||+|++|++++|+||||||||||+++|+|+ ++| ++|+|.++|.
T Consensus 3 ~l~~~~~~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~ 79 (250)
T PRK14245 3 KIDARDVNFWYGD---FHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDGRNIYDKGVQV 79 (250)
T ss_pred EEEEEEEEEEECC---EeEEeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhhhhcccCCCCCceEEEECCEecccccccH
Confidence 6899999999963 4589999999999999999999999999999999997 454 5899998862
Q ss_pred ------EEEEecCCCCccccHHHHHhcCCcc----c----HHHHHHHHHHhcchhHHhcCCCCCccccCCCCCCCCHHHH
Q psy1503 154 ------VSYASQEPWIFAATIRQNILFGLPY----L----RRRYADVIRVCALQDDFDSLPNGDFTVVGERGASLSGGQK 219 (265)
Q Consensus 154 ------i~~v~Q~~~l~~~ti~eni~~~~~~----~----~~~~~~~~~~~~l~~~i~~l~~g~~t~vg~~g~~LSgGqr 219 (265)
++|++|++.+|+.|+.||+.++... . .++..++++.+++.+.+. +.....+.+||||||
T Consensus 80 ~~~~~~i~~v~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LS~G~~ 152 (250)
T PRK14245 80 DELRKNVGMVFQRPNPFPKSIFENVAYGLRVNGVKDNAFIRQRVEETLKGAALWDEVK-------DKLKESAFALSGGQQ 152 (250)
T ss_pred HHHhhheEEEecCCccCcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCcchh-------hhhhCCcccCCHHHH
Confidence 8999999999988999999865311 1 122334444444433221 223456789999999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHH
Q psy1503 220 ARINLARAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGC 260 (265)
Q Consensus 220 qRialARal~~~~~illLDEp~s~LD~~~~~~i~~~~i~~~ 260 (265)
||++|||||+.+|+++||||||++||+.+...+.+ .+..+
T Consensus 153 qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~-~l~~~ 192 (250)
T PRK14245 153 QRLCIARAMAVSPSVLLMDEPASALDPISTAKVEE-LIHEL 192 (250)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHH-HHHHH
Confidence 99999999999999999999999999999988755 44444
No 202
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=1.5e-36 Score=261.00 Aligned_cols=158 Identities=25% Similarity=0.309 Sum_probs=131.2
Q ss_pred cEEEEeEEEEeCCCCCCcceeeceEEEcCCcEEEEEcCCCChHHHHHHHHhcCcCCCccEEEEcCe----------EEEE
Q psy1503 88 HVSLDNVTAQWSLQNADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSLGGT----------VSYA 157 (265)
Q Consensus 88 ~i~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g~----------i~~v 157 (265)
.++++|++++|+. ..+++++||+|++|++++|+||||||||||+++|+|+++|++|+|.++|. ++|+
T Consensus 2 ~l~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 78 (207)
T PRK13539 2 MLEGEDLACVRGG---RVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKLDGGDIDDPDVAEACHYL 78 (207)
T ss_pred EEEEEeEEEEECC---eEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeCcchhhHhhcEEe
Confidence 4789999999963 45899999999999999999999999999999999999999999999883 7999
Q ss_pred ecCCCCc-cccHHHHHhcCCc---ccHHHHHHHHHHhcchhHHhcCCCCCccccCCCCCCCCHHHHHHHHHHHHHccCCC
Q psy1503 158 SQEPWIF-AATIRQNILFGLP---YLRRRYADVIRVCALQDDFDSLPNGDFTVVGERGASLSGGQKARINLARAVYKNAD 233 (265)
Q Consensus 158 ~Q~~~l~-~~ti~eni~~~~~---~~~~~~~~~~~~~~l~~~i~~l~~g~~t~vg~~g~~LSgGqrqRialARal~~~~~ 233 (265)
+|++.++ ..|++||+.+... ...++..++++..++.+... ....+||||||||++||||++++|+
T Consensus 79 ~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~qrl~la~al~~~p~ 147 (207)
T PRK13539 79 GHRNAMKPALTVAENLEFWAAFLGGEELDIAAALEAVGLAPLAH-----------LPFGYLSAGQKRRVALARLLVSNRP 147 (207)
T ss_pred cCCCcCCCCCcHHHHHHHHHHhcCCcHHHHHHHHHHcCCHHHHc-----------CChhhcCHHHHHHHHHHHHHhcCCC
Confidence 9887776 4799999976432 12334556666666654322 2345899999999999999999999
Q ss_pred EEEEeCCCCCcCHHHHHHHHHHHHHHH
Q psy1503 234 IYLLDDPLSAVDMHVGKHLFEDCISGC 260 (265)
Q Consensus 234 illLDEp~s~LD~~~~~~i~~~~i~~~ 260 (265)
++||||||++||+.+.+++.+ .+..+
T Consensus 148 llllDEPt~~LD~~~~~~l~~-~l~~~ 173 (207)
T PRK13539 148 IWILDEPTAALDAAAVALFAE-LIRAH 173 (207)
T ss_pred EEEEeCCcccCCHHHHHHHHH-HHHHH
Confidence 999999999999999998865 44443
No 203
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=6.5e-37 Score=286.78 Aligned_cols=161 Identities=23% Similarity=0.409 Sum_probs=130.3
Q ss_pred cEEEEeEEEEeCCCC---------------------CCcceeeceEEEcCCcEEEEEcCCCChHHHHHHHHhcCcCCCcc
Q psy1503 88 HVSLDNVTAQWSLQN---------------------ADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSG 146 (265)
Q Consensus 88 ~i~~~~~~~~~~~~~---------------------~~~~l~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G 146 (265)
.|+++|+++.|+... ...+|+|+||+|++|++++|+||||||||||+++|+|+++|++|
T Consensus 4 ~i~~~~~~k~fg~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~p~sG 83 (400)
T PRK10070 4 KLEIKNLYKIFGEHPQRAFKYIEQGLSKEQILEKTGLSLGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRG 83 (400)
T ss_pred EEEEeeeEEecCCChHHHHHHHhccccHHHHHhhcCCeEEEEeEEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCC
Confidence 477778877775421 12379999999999999999999999999999999999999999
Q ss_pred EEEEcC-----------------eEEEEecCCCCcc-ccHHHHHhcCCc---cc----HHHHHHHHHHhcchhHHhcCCC
Q psy1503 147 KVSLGG-----------------TVSYASQEPWIFA-ATIRQNILFGLP---YL----RRRYADVIRVCALQDDFDSLPN 201 (265)
Q Consensus 147 ~i~~~g-----------------~i~~v~Q~~~l~~-~ti~eni~~~~~---~~----~~~~~~~~~~~~l~~~i~~l~~ 201 (265)
+|.++| .++|++|++.+|+ .|++||+.++.. .. .++..++++.+++.+...
T Consensus 84 ~I~i~G~~i~~~~~~~l~~~~~~~igyv~Q~~~l~~~~Tv~enl~~~~~~~~~~~~~~~~~~~e~L~~~gL~~~~~---- 159 (400)
T PRK10070 84 QVLIDGVDIAKISDAELREVRRKKIAMVFQSFALMPHMTVLDNTAFGMELAGINAEERREKALDALRQVGLENYAH---- 159 (400)
T ss_pred EEEECCEECCcCCHHHHHHHHhCCEEEEECCCcCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhhh----
Confidence 999986 2899999999996 599999987532 11 123444555555544433
Q ss_pred CCccccCCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHH
Q psy1503 202 GDFTVVGERGASLSGGQKARINLARAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGC 260 (265)
Q Consensus 202 g~~t~vg~~g~~LSgGqrqRialARal~~~~~illLDEp~s~LD~~~~~~i~~~~i~~~ 260 (265)
....+||||||||++|||||+.+|+++||||||++||+.+.+.+.+. +..+
T Consensus 160 -------~~~~~LSgGq~QRv~LArAL~~~P~iLLLDEPts~LD~~~r~~l~~~-L~~l 210 (400)
T PRK10070 160 -------SYPDELSGGMRQRVGLARALAINPDILLMDEAFSALDPLIRTEMQDE-LVKL 210 (400)
T ss_pred -------cCcccCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHH-HHHH
Confidence 34468999999999999999999999999999999999999988654 4443
No 204
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.1e-36 Score=272.86 Aligned_cols=159 Identities=22% Similarity=0.387 Sum_probs=129.9
Q ss_pred cEEEEeEEEEeCCCCCCcceeeceEEEcCCcEEEEEcCCCChHHHHHHHHhcCcCCCccEEEEcCe--------------
Q psy1503 88 HVSLDNVTAQWSLQNADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSLGGT-------------- 153 (265)
Q Consensus 88 ~i~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g~-------------- 153 (265)
+++++|++++|+. ..++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.
T Consensus 1 ~l~~~~l~~~~~~--~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~ 78 (275)
T PRK13639 1 ILETRDLKYSYPD--GTEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEVLIKGEPIKYDKKSLLEVRK 78 (275)
T ss_pred CEEEEEEEEEeCC--CCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEECccccchHHHHHh
Confidence 3789999999963 245899999999999999999999999999999999999999999999872
Q ss_pred -EEEEecCC--CCccccHHHHHhcCCc---cc----HHHHHHHHHHhcchhHHhcCCCCCccccCCCCCCCCHHHHHHHH
Q psy1503 154 -VSYASQEP--WIFAATIRQNILFGLP---YL----RRRYADVIRVCALQDDFDSLPNGDFTVVGERGASLSGGQKARIN 223 (265)
Q Consensus 154 -i~~v~Q~~--~l~~~ti~eni~~~~~---~~----~~~~~~~~~~~~l~~~i~~l~~g~~t~vg~~g~~LSgGqrqRia 223 (265)
++|++|++ .+++.|+.||+.++.. .. .++..++++.+++.... .....+||||||||++
T Consensus 79 ~i~~v~q~~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~-----------~~~~~~LS~Gq~qrv~ 147 (275)
T PRK13639 79 TVGIVFQNPDDQLFAPTVEEDVAFGPLNLGLSKEEVEKRVKEALKAVGMEGFE-----------NKPPHHLSGGQKKRVA 147 (275)
T ss_pred heEEEeeChhhhhccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchhh-----------cCChhhCCHHHHHHHH
Confidence 79999997 4678899999987531 11 12334445555543222 2345689999999999
Q ss_pred HHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHH
Q psy1503 224 LARAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGC 260 (265)
Q Consensus 224 lARal~~~~~illLDEp~s~LD~~~~~~i~~~~i~~~ 260 (265)
||||++.+|+++||||||++||+.+...+.+ .+..+
T Consensus 148 laral~~~p~llllDEPt~gLD~~~~~~l~~-~l~~l 183 (275)
T PRK13639 148 IAGILAMKPEIIVLDEPTSGLDPMGASQIMK-LLYDL 183 (275)
T ss_pred HHHHHhcCCCEEEEeCCCcCCCHHHHHHHHH-HHHHH
Confidence 9999999999999999999999999988865 44444
No 205
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.3e-36 Score=271.26 Aligned_cols=162 Identities=23% Similarity=0.425 Sum_probs=130.8
Q ss_pred CcEEEEeEEEEeCCCCCCcceeeceEEEcCCcEEEEEcCCCChHHHHHHHHhcCcCCCccEEEEcCe-------------
Q psy1503 87 GHVSLDNVTAQWSLQNADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSLGGT------------- 153 (265)
Q Consensus 87 ~~i~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g~------------- 153 (265)
..++++|++++|++. ..++++|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.
T Consensus 6 ~~l~i~~l~~~~~~~-~~~~l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~ 84 (269)
T PRK13648 6 SIIVFKNVSFQYQSD-ASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEIFYNNQAITDDNFEKLRKH 84 (269)
T ss_pred ceEEEEEEEEEcCCC-CCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhh
Confidence 368999999999642 245899999999999999999999999999999999999999999999883
Q ss_pred EEEEecCCC-Cc-cccHHHHHhcCCcc---cH----HHHHHHHHHhcchhHHhcCCCCCccccCCCCCCCCHHHHHHHHH
Q psy1503 154 VSYASQEPW-IF-AATIRQNILFGLPY---LR----RRYADVIRVCALQDDFDSLPNGDFTVVGERGASLSGGQKARINL 224 (265)
Q Consensus 154 i~~v~Q~~~-l~-~~ti~eni~~~~~~---~~----~~~~~~~~~~~l~~~i~~l~~g~~t~vg~~g~~LSgGqrqRial 224 (265)
++|++|++. +| ..|+++|+.++... .. ++..++++..++.+. ......+||||||||++|
T Consensus 85 i~~v~q~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LS~G~~qrl~l 153 (269)
T PRK13648 85 IGIVFQNPDNQFVGSIVKYDVAFGLENHAVPYDEMHRRVSEALKQVDMLER-----------ADYEPNALSGGQKQRVAI 153 (269)
T ss_pred eeEEEeChHHhcccccHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCchh-----------hhCCcccCCHHHHHHHHH
Confidence 899999985 44 56899999876321 11 122333444444322 234557899999999999
Q ss_pred HHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHHh
Q psy1503 225 ARAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGCL 261 (265)
Q Consensus 225 ARal~~~~~illLDEp~s~LD~~~~~~i~~~~i~~~l 261 (265)
|||++.+|+++||||||++||+.+.+.+++ .+..+.
T Consensus 154 aral~~~p~lllLDEPt~~LD~~~~~~l~~-~L~~~~ 189 (269)
T PRK13648 154 AGVLALNPSVIILDEATSMLDPDARQNLLD-LVRKVK 189 (269)
T ss_pred HHHHHcCCCEEEEeCCcccCCHHHHHHHHH-HHHHHH
Confidence 999999999999999999999999998865 444443
No 206
>PRK14243 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.5e-36 Score=270.40 Aligned_cols=163 Identities=26% Similarity=0.391 Sum_probs=132.6
Q ss_pred CcEEEEeEEEEeCCCCCCcceeeceEEEcCCcEEEEEcCCCChHHHHHHHHhcCcC-----CCccEEEEcCe--------
Q psy1503 87 GHVSLDNVTAQWSLQNADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELR-----ISSGKVSLGGT-------- 153 (265)
Q Consensus 87 ~~i~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~-----~~~G~i~~~g~-------- 153 (265)
..|+++|++++|+. .++|+|+||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|.
T Consensus 9 ~~l~i~~v~~~~~~---~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~ 85 (264)
T PRK14243 9 TVLRTENLNVYYGS---FLAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLYAPDVD 85 (264)
T ss_pred eEEEEeeeEEEECC---EEEeecceEEEcCCCEEEEECCCCCCHHHHHHHHHhhhcccCCCCCceEEEECCEEccccccC
Confidence 36999999999963 468999999999999999999999999999999999986 47999998772
Q ss_pred -------EEEEecCCCCccccHHHHHhcCCcc---c---HHHHHHHHHHhcchhHHhcCCCCCccccCCCCCCCCHHHHH
Q psy1503 154 -------VSYASQEPWIFAATIRQNILFGLPY---L---RRRYADVIRVCALQDDFDSLPNGDFTVVGERGASLSGGQKA 220 (265)
Q Consensus 154 -------i~~v~Q~~~l~~~ti~eni~~~~~~---~---~~~~~~~~~~~~l~~~i~~l~~g~~t~vg~~g~~LSgGqrq 220 (265)
++|++|++.+|+.|+.||+.++... . .++..++++.+++...+.. .....+.+|||||||
T Consensus 86 ~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~-------~~~~~~~~LSgGq~q 158 (264)
T PRK14243 86 PVEVRRRIGMVFQKPNPFPKSIYDNIAYGARINGYKGDMDELVERSLRQAALWDEVKD-------KLKQSGLSLSGGQQQ 158 (264)
T ss_pred hHHHhhhEEEEccCCccccccHHHHHHhhhhhcCcchHHHHHHHHHHHHhCchhhHHH-------HhcCCcccCCHHHHH
Confidence 8999999999988999999875321 1 1223344455555433321 234567799999999
Q ss_pred HHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHH
Q psy1503 221 RINLARAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGC 260 (265)
Q Consensus 221 RialARal~~~~~illLDEp~s~LD~~~~~~i~~~~i~~~ 260 (265)
|++|||||+.+|+++||||||++||+.+...+++ .+..+
T Consensus 159 rv~laral~~~p~lllLDEPt~~LD~~~~~~l~~-~L~~~ 197 (264)
T PRK14243 159 RLCIARAIAVQPEVILMDEPCSALDPISTLRIEE-LMHEL 197 (264)
T ss_pred HHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHH-HHHHH
Confidence 9999999999999999999999999999988755 44444
No 207
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1e-36 Score=268.96 Aligned_cols=162 Identities=25% Similarity=0.416 Sum_probs=130.3
Q ss_pred cEEEEeEEEEeCCCCCCcceeeceEEEcCCcEEEEEcCCCChHHHHHHHHhcCcC-----CCccEEEEcCe---------
Q psy1503 88 HVSLDNVTAQWSLQNADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELR-----ISSGKVSLGGT--------- 153 (265)
Q Consensus 88 ~i~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~-----~~~G~i~~~g~--------- 153 (265)
.++++|++++|+. .++|+++||+|++|++++|+|+||||||||+++|+|+++ |++|+|.++|.
T Consensus 4 ~l~~~~l~~~~~~---~~~l~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i~g~~~~~~~~~~ 80 (251)
T PRK14251 4 IISAKDVHLSYGN---YEALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYGSKMDL 80 (251)
T ss_pred eEEEEeeEEEECC---eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhhccccccCCCcceEEEECCEEcccccchH
Confidence 5899999999963 469999999999999999999999999999999999997 47999998872
Q ss_pred ------EEEEecCCCCccccHHHHHhcCCcc----cH----HHHHHHHHHhcchhHHhcCCCCCccccCCCCCCCCHHHH
Q psy1503 154 ------VSYASQEPWIFAATIRQNILFGLPY----LR----RRYADVIRVCALQDDFDSLPNGDFTVVGERGASLSGGQK 219 (265)
Q Consensus 154 ------i~~v~Q~~~l~~~ti~eni~~~~~~----~~----~~~~~~~~~~~l~~~i~~l~~g~~t~vg~~g~~LSgGqr 219 (265)
++|++|++.+|+.|++||+.++... .. +++.++++.+++...+ .......+.+||||||
T Consensus 81 ~~~~~~i~~~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~~~~~~~LS~Gq~ 153 (251)
T PRK14251 81 VELRKEVGMVFQQPTPFPFSVYDNVAYGLKIAGVKDKELIDQRVEESLKQAAIWKET-------KDNLDRNAQAFSGGQQ 153 (251)
T ss_pred HHhhccEEEEecCCccCCCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCcch-------HHHhccChhhCCHHHH
Confidence 8999999999999999999875321 11 2233344444442111 1123456789999999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHH
Q psy1503 220 ARINLARAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGC 260 (265)
Q Consensus 220 qRialARal~~~~~illLDEp~s~LD~~~~~~i~~~~i~~~ 260 (265)
||++||||++++|+++||||||++||+.+...+++ .+..+
T Consensus 154 qr~~laral~~~p~llllDEP~~~LD~~~~~~l~~-~l~~~ 193 (251)
T PRK14251 154 QRICIARALAVRPKVVLLDEPTSALDPISSSEIEE-TLMEL 193 (251)
T ss_pred HHHHHHHHHhcCCCEEEecCCCccCCHHHHHHHHH-HHHHH
Confidence 99999999999999999999999999999888755 44444
No 208
>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.1e-36 Score=274.21 Aligned_cols=164 Identities=26% Similarity=0.467 Sum_probs=132.8
Q ss_pred CCcEEEEeEEEEeCCCCCCcceeeceEEEcCCcEEEEEcCCCChHHHHHHHHhcCcC-----CCccEEEEcCe-------
Q psy1503 86 KGHVSLDNVTAQWSLQNADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELR-----ISSGKVSLGGT------- 153 (265)
Q Consensus 86 ~~~i~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~-----~~~G~i~~~g~------- 153 (265)
+..|+++|++++|+. .++|+|+||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|.
T Consensus 37 ~~~l~i~~l~~~~~~---~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~I~i~G~~i~~~~~ 113 (285)
T PRK14254 37 ETVIEARDLNVFYGD---EQALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKNVYDADV 113 (285)
T ss_pred CceEEEEEEEEEECC---EeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEcccccc
Confidence 457999999999963 469999999999999999999999999999999999987 68999998762
Q ss_pred --------EEEEecCCCCccccHHHHHhcCCc---c---cHHHHHHHHHHhcchhHHhcCCCCCccccCCCCCCCCHHHH
Q psy1503 154 --------VSYASQEPWIFAATIRQNILFGLP---Y---LRRRYADVIRVCALQDDFDSLPNGDFTVVGERGASLSGGQK 219 (265)
Q Consensus 154 --------i~~v~Q~~~l~~~ti~eni~~~~~---~---~~~~~~~~~~~~~l~~~i~~l~~g~~t~vg~~g~~LSgGqr 219 (265)
++|++|++.+|+.|+.||+.++.. . ..+++.++++..++...+. .....++.+||||||
T Consensus 114 ~~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~-------~~~~~~~~~LSgGe~ 186 (285)
T PRK14254 114 DPVALRRRIGMVFQKPNPFPKSIYDNVAYGLKIQGYDGDIDERVEESLRRAALWDEVK-------DQLDSSGLDLSGGQQ 186 (285)
T ss_pred chHhhhccEEEEecCCccCcCCHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCchhH-------HHHhCCcccCCHHHH
Confidence 799999999998899999986421 1 1223344444444432221 123456789999999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHH
Q psy1503 220 ARINLARAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGC 260 (265)
Q Consensus 220 qRialARal~~~~~illLDEp~s~LD~~~~~~i~~~~i~~~ 260 (265)
||++|||||+++|+|+||||||++||+.+...+.+ .+..+
T Consensus 187 qrv~LAraL~~~p~lLLLDEPts~LD~~~~~~l~~-~L~~~ 226 (285)
T PRK14254 187 QRLCIARAIAPDPEVILMDEPASALDPVATSKIED-LIEEL 226 (285)
T ss_pred HHHHHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHH-HHHHH
Confidence 99999999999999999999999999999988855 45444
No 209
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.6e-36 Score=265.58 Aligned_cols=158 Identities=27% Similarity=0.461 Sum_probs=127.9
Q ss_pred cEEEEeEEEEeCCCCCCcceeeceEEEcCCcEEEEEcCCCChHHHHHHHHhcCcCCCccEEEEcCe--------------
Q psy1503 88 HVSLDNVTAQWSLQNADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSLGGT-------------- 153 (265)
Q Consensus 88 ~i~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g~-------------- 153 (265)
.++++|++++|+. .++++++||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.
T Consensus 5 ~l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~ 81 (237)
T PRK11614 5 MLSFDKVSAHYGK---IQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKDITDWQTAKIMREA 81 (237)
T ss_pred EEEEEeEEEeeCC---ceeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEecCCCCHHHHHHhC
Confidence 6899999999953 46899999999999999999999999999999999999999999999872
Q ss_pred EEEEecCCCCcc-ccHHHHHhcCCcc-cHH----HHHHHHHHh-cchhHHhcCCCCCccccCCCCCCCCHHHHHHHHHHH
Q psy1503 154 VSYASQEPWIFA-ATIRQNILFGLPY-LRR----RYADVIRVC-ALQDDFDSLPNGDFTVVGERGASLSGGQKARINLAR 226 (265)
Q Consensus 154 i~~v~Q~~~l~~-~ti~eni~~~~~~-~~~----~~~~~~~~~-~l~~~i~~l~~g~~t~vg~~g~~LSgGqrqRialAR 226 (265)
++|++|++.+|+ .|++||+.++... ... +..++++.. .+.+ ........||||||||++|||
T Consensus 82 i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~l~~~~~l~~-----------~~~~~~~~LS~G~~qrl~la~ 150 (237)
T PRK11614 82 VAIVPEGRRVFSRMTVEENLAMGGFFAERDQFQERIKWVYELFPRLHE-----------RRIQRAGTMSGGEQQMLAIGR 150 (237)
T ss_pred EEEeccCcccCCCCcHHHHHHHhhhccChhHHHHHHHHHHHHHHHHHH-----------HHhCchhhCCHHHHHHHHHHH
Confidence 899999999997 4999999875321 111 112222222 1111 122356789999999999999
Q ss_pred HHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHH
Q psy1503 227 AVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGC 260 (265)
Q Consensus 227 al~~~~~illLDEp~s~LD~~~~~~i~~~~i~~~ 260 (265)
|++.+|+++||||||++||+.+...+++ .+..+
T Consensus 151 al~~~p~illlDEPt~~LD~~~~~~l~~-~l~~~ 183 (237)
T PRK11614 151 ALMSQPRLLLLDEPSLGLAPIIIQQIFD-TIEQL 183 (237)
T ss_pred HHHhCCCEEEEcCccccCCHHHHHHHHH-HHHHH
Confidence 9999999999999999999999988865 44444
No 210
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=100.00 E-value=1.3e-36 Score=263.93 Aligned_cols=157 Identities=24% Similarity=0.394 Sum_probs=130.9
Q ss_pred EEEEeEEEEeCCCCCCcceeeceEEEcCCcEEEEEcCCCChHHHHHHHHhcCcCCCccEEEEcCe---------EEEEec
Q psy1503 89 VSLDNVTAQWSLQNADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSLGGT---------VSYASQ 159 (265)
Q Consensus 89 i~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g~---------i~~v~Q 159 (265)
++++|++++|+. .++++++||++++|++++|+||||||||||+++|+|+++|++|+|.++|. ++|++|
T Consensus 1 l~l~~v~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~~~~~~~~~~~~~q 77 (223)
T TIGR03740 1 LETKNLSKRFGK---QTAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPTSGEIIFDGHPWTRKDLHKIGSLIE 77 (223)
T ss_pred CEEEeEEEEECC---EEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEeccccccccEEEEcC
Confidence 468999999963 46899999999999999999999999999999999999999999999873 899999
Q ss_pred CCCCcc-ccHHHHHhcCC---cccHHHHHHHHHHhcchhHHhcCCCCCccccCCCCCCCCHHHHHHHHHHHHHccCCCEE
Q psy1503 160 EPWIFA-ATIRQNILFGL---PYLRRRYADVIRVCALQDDFDSLPNGDFTVVGERGASLSGGQKARINLARAVYKNADIY 235 (265)
Q Consensus 160 ~~~l~~-~ti~eni~~~~---~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~vg~~g~~LSgGqrqRialARal~~~~~il 235 (265)
++.+++ .|++||+.++. .....+..++++..++.+..+ ....+||||||||++||||++.+|+++
T Consensus 78 ~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~~rv~laral~~~p~ll 146 (223)
T TIGR03740 78 SPPLYENLTARENLKVHTTLLGLPDSRIDEVLNIVDLTNTGK-----------KKAKQFSLGMKQRLGIAIALLNHPKLL 146 (223)
T ss_pred CCCccccCCHHHHHHHHHHHcCCCHHHHHHHHHHcCCcHHHh-----------hhHhhCCHHHHHHHHHHHHHhcCCCEE
Confidence 998886 69999997642 122344555566666654332 345689999999999999999999999
Q ss_pred EEeCCCCCcCHHHHHHHHHHHHHHH
Q psy1503 236 LLDDPLSAVDMHVGKHLFEDCISGC 260 (265)
Q Consensus 236 lLDEp~s~LD~~~~~~i~~~~i~~~ 260 (265)
||||||++||+.+.+.+.+ ++..+
T Consensus 147 llDEP~~~LD~~~~~~l~~-~L~~~ 170 (223)
T TIGR03740 147 ILDEPTNGLDPIGIQELRE-LIRSF 170 (223)
T ss_pred EECCCccCCCHHHHHHHHH-HHHHH
Confidence 9999999999999988855 44444
No 211
>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=2.3e-38 Score=265.55 Aligned_cols=165 Identities=27% Similarity=0.413 Sum_probs=130.5
Q ss_pred cEEEEeEEEEeCCCCCCcceeeceEEEcCCcEEEEEcCCCChHHHHHHHHhcCcCCCccEEEEcCe--------------
Q psy1503 88 HVSLDNVTAQWSLQNADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSLGGT-------------- 153 (265)
Q Consensus 88 ~i~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g~-------------- 153 (265)
.+..+|+.++|. .+++++++||++++||++++.|||||||||.+.++.|+.+|++|+|.+++.
T Consensus 4 ~L~a~~l~K~y~---kr~Vv~~Vsl~v~~GEiVGLLGPNGAGKTT~Fymi~Glv~~d~G~i~ld~~diT~lPm~~RArlG 80 (243)
T COG1137 4 TLVAENLAKSYK---KRKVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPDSGKILLDDEDITKLPMHKRARLG 80 (243)
T ss_pred EEEehhhhHhhC---CeeeeeeeeEEEcCCcEEEEECCCCCCceeEEEEEEEEEecCCceEEECCcccccCChHHHhhcC
Confidence 578899999996 357999999999999999999999999999999999999999999999984
Q ss_pred EEEEecCCCCcc-ccHHHHHhcCCcccHHHHHHHHHHhcchhHHhcCCCCCccccCCCCCCCCHHHHHHHHHHHHHccCC
Q psy1503 154 VSYASQEPWIFA-ATIRQNILFGLPYLRRRYADVIRVCALQDDFDSLPNGDFTVVGERGASLSGGQKARINLARAVYKNA 232 (265)
Q Consensus 154 i~~v~Q~~~l~~-~ti~eni~~~~~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~vg~~g~~LSgGqrqRialARal~~~~ 232 (265)
|||+||++.+|. .||.|||..-.+......+...+...++..++.+ .........+..||||||.|+.|||||+.+|
T Consensus 81 igYLpQE~SIFr~LtV~dNi~~vlE~~~~d~~~~~~~~~l~~LL~ef--~i~hlr~~~a~sLSGGERRR~EIARaLa~~P 158 (243)
T COG1137 81 IGYLPQEASIFRKLTVEDNIMAVLEIREKDLKKAERKEELDALLEEF--HITHLRDSKAYSLSGGERRRVEIARALAANP 158 (243)
T ss_pred cccccccchHhhcCcHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHh--chHHHhcCcccccccchHHHHHHHHHHhcCC
Confidence 999999999996 5999999864332110001111111122222221 1223344678899999999999999999999
Q ss_pred CEEEEeCCCCCcCHHHHHHHHHHHHH
Q psy1503 233 DIYLLDDPLSAVDMHVGKHLFEDCIS 258 (265)
Q Consensus 233 ~illLDEp~s~LD~~~~~~i~~~~i~ 258 (265)
+.++|||||+|+||.+...| ++.+.
T Consensus 159 ~fiLLDEPFAGVDPiaV~dI-q~iI~ 183 (243)
T COG1137 159 KFILLDEPFAGVDPIAVIDI-QRIIK 183 (243)
T ss_pred CEEEecCCccCCCchhHHHH-HHHHH
Confidence 99999999999999999988 54553
No 212
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.4e-36 Score=266.99 Aligned_cols=163 Identities=24% Similarity=0.373 Sum_probs=130.8
Q ss_pred CcEEEEeEEEEeCCCCCCcceeeceEEEcCCcEEEEEcCCCChHHHHHHHHhcCcCC-----CccEEEEcC---------
Q psy1503 87 GHVSLDNVTAQWSLQNADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRI-----SSGKVSLGG--------- 152 (265)
Q Consensus 87 ~~i~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~-----~~G~i~~~g--------- 152 (265)
..|+++|++++|+. ..+|+|+||+|++|++++|+||||||||||+++|+|+.+| ++|+|.++|
T Consensus 5 ~~i~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~ 81 (253)
T PRK14261 5 IILSTKNLNLWYGE---KHALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMDSGAD 81 (253)
T ss_pred ceEEEeeeEEEECC---eeeeeeeEEEECCCcEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEccccccc
Confidence 36899999999963 4689999999999999999999999999999999998763 489999876
Q ss_pred ------eEEEEecCCCCccccHHHHHhcCCcc----cH----HHHHHHHHHhcchhHHhcCCCCCccccCCCCCCCCHHH
Q psy1503 153 ------TVSYASQEPWIFAATIRQNILFGLPY----LR----RRYADVIRVCALQDDFDSLPNGDFTVVGERGASLSGGQ 218 (265)
Q Consensus 153 ------~i~~v~Q~~~l~~~ti~eni~~~~~~----~~----~~~~~~~~~~~l~~~i~~l~~g~~t~vg~~g~~LSgGq 218 (265)
.++|++|++.+|+.|++||+.++... .. ++..++++.+++.+.+ .+..+..+.+|||||
T Consensus 82 ~~~~~~~i~~~~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l-------~~~~~~~~~~LS~G~ 154 (253)
T PRK14261 82 VVALRRKIGMVFQRPNPFPKSIYENVAYGPRIHGEKNKKTLDTIVEKSLKGAALWDEV-------KDRLHDSALSLSGGQ 154 (253)
T ss_pred hhhhhceEEEEecCCccCcccHHHHHHhhHHhcCCCCHHHHHHHHHHHHHHhcCchhh-------HHHhhcChhhCCHHH
Confidence 28999999999988999999876321 11 1222333333332222 123456778999999
Q ss_pred HHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHH
Q psy1503 219 KARINLARAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGC 260 (265)
Q Consensus 219 rqRialARal~~~~~illLDEp~s~LD~~~~~~i~~~~i~~~ 260 (265)
|||++||||++.+|+++||||||++||+.+.+.+.+ .+..+
T Consensus 155 ~qrv~laral~~~p~lllLDEP~~gLD~~~~~~l~~-~l~~~ 195 (253)
T PRK14261 155 QQRLCIARTLAVNPEVILMDEPCSALDPIATAKIED-LIEDL 195 (253)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHH-HHHHH
Confidence 999999999999999999999999999999988854 55444
No 213
>PRK14236 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.2e-36 Score=270.34 Aligned_cols=164 Identities=27% Similarity=0.407 Sum_probs=132.5
Q ss_pred CCcEEEEeEEEEeCCCCCCcceeeceEEEcCCcEEEEEcCCCChHHHHHHHHhcCcCC-----CccEEEEcC--------
Q psy1503 86 KGHVSLDNVTAQWSLQNADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRI-----SSGKVSLGG-------- 152 (265)
Q Consensus 86 ~~~i~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~-----~~G~i~~~g-------- 152 (265)
...++++|++++|+. .++++|+||+|++|++++|+||||||||||+++|+|+++| ++|+|.++|
T Consensus 23 ~~~l~~~nl~~~~~~---~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i~i~g~~i~~~~~ 99 (272)
T PRK14236 23 QTALEVRNLNLFYGD---KQALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDGQNIYDKKV 99 (272)
T ss_pred CcEEEEEEEEEEECC---eeEeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCccCCCCceEEEECCEECccccc
Confidence 357999999999963 4689999999999999999999999999999999999874 899999876
Q ss_pred -------eEEEEecCCCCccccHHHHHhcCCcc----c----HHHHHHHHHHhcchhHHhcCCCCCccccCCCCCCCCHH
Q psy1503 153 -------TVSYASQEPWIFAATIRQNILFGLPY----L----RRRYADVIRVCALQDDFDSLPNGDFTVVGERGASLSGG 217 (265)
Q Consensus 153 -------~i~~v~Q~~~l~~~ti~eni~~~~~~----~----~~~~~~~~~~~~l~~~i~~l~~g~~t~vg~~g~~LSgG 217 (265)
.++|++|++.+|+.|++||+.++... . .++..++++.+++.+.+. +..+..+.+||||
T Consensus 100 ~~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LS~G 172 (272)
T PRK14236 100 DVAELRRRVGMVFQRPNPFPKSIYENVVYGLRLQGINNRRVLDEAVERSLRGAALWDEVK-------DRLHENAFGLSGG 172 (272)
T ss_pred CHHHHhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCChhHH-------HHhhCCcccCCHH
Confidence 28999999999988999999875211 1 122334444444433221 2345677899999
Q ss_pred HHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHH
Q psy1503 218 QKARINLARAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGC 260 (265)
Q Consensus 218 qrqRialARal~~~~~illLDEp~s~LD~~~~~~i~~~~i~~~ 260 (265)
||||++|||||+++|+++||||||++||+.+...+.+ .+..+
T Consensus 173 q~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~-~L~~~ 214 (272)
T PRK14236 173 QQQRLVIARAIAIEPEVLLLDEPTSALDPISTLKIEE-LITEL 214 (272)
T ss_pred HHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHH-HHHHH
Confidence 9999999999999999999999999999999888754 44444
No 214
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.7e-36 Score=253.81 Aligned_cols=128 Identities=30% Similarity=0.608 Sum_probs=116.4
Q ss_pred EEEEeEEEEeCCCCCCcceeeceEEEcCCcEEEEEcCCCChHHHHHHHHhcCcCCCccEEEEcCe------------EEE
Q psy1503 89 VSLDNVTAQWSLQNADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSLGGT------------VSY 156 (265)
Q Consensus 89 i~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g~------------i~~ 156 (265)
++++|++++|+. .++++++||++++|++++|+||||||||||+++|+|+++|++|+|.++|. ++|
T Consensus 1 l~~~~l~~~~~~---~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~ 77 (173)
T cd03230 1 IEVRNLSKRYGK---KTALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEIKVLGKDIKKEPEEVKRRIGY 77 (173)
T ss_pred CEEEEEEEEECC---eeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccchHhhhccEEE
Confidence 468999999963 36899999999999999999999999999999999999999999999873 899
Q ss_pred EecCCCCccc-cHHHHHhcCCcccHHHHHHHHHHhcchhHHhcCCCCCccccCCCCCCCCHHHHHHHHHHHHHccCCCEE
Q psy1503 157 ASQEPWIFAA-TIRQNILFGLPYLRRRYADVIRVCALQDDFDSLPNGDFTVVGERGASLSGGQKARINLARAVYKNADIY 235 (265)
Q Consensus 157 v~Q~~~l~~~-ti~eni~~~~~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~vg~~g~~LSgGqrqRialARal~~~~~il 235 (265)
++|++.+|+. |+.||+. ||||||||++|||||+.+|+++
T Consensus 78 ~~q~~~~~~~~tv~~~~~----------------------------------------LS~G~~qrv~laral~~~p~il 117 (173)
T cd03230 78 LPEEPSLYENLTVRENLK----------------------------------------LSGGMKQRLALAQALLHDPELL 117 (173)
T ss_pred EecCCccccCCcHHHHhh----------------------------------------cCHHHHHHHHHHHHHHcCCCEE
Confidence 9999998875 9999973 9999999999999999999999
Q ss_pred EEeCCCCCcCHHHHHHHHHHHHHHH
Q psy1503 236 LLDDPLSAVDMHVGKHLFEDCISGC 260 (265)
Q Consensus 236 lLDEp~s~LD~~~~~~i~~~~i~~~ 260 (265)
||||||++||+.+...+.+ .+..+
T Consensus 118 llDEPt~~LD~~~~~~l~~-~l~~~ 141 (173)
T cd03230 118 ILDEPTSGLDPESRREFWE-LLREL 141 (173)
T ss_pred EEeCCccCCCHHHHHHHHH-HHHHH
Confidence 9999999999999998865 44444
No 215
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=100.00 E-value=1.5e-36 Score=266.28 Aligned_cols=158 Identities=20% Similarity=0.276 Sum_probs=124.4
Q ss_pred EEEEeEEEEeCCCCCCcceeeceEEEcCCcEEEEEcCCCChHHHHHHHHhcCc--CCCccEEEEcCe-------------
Q psy1503 89 VSLDNVTAQWSLQNADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNEL--RISSGKVSLGGT------------- 153 (265)
Q Consensus 89 i~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~g~~--~~~~G~i~~~g~------------- 153 (265)
|+++|++++|+. .++|+|+||+|++|++++|+||||||||||+++|+|++ +|++|+|.++|.
T Consensus 1 l~~~~l~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~ 77 (243)
T TIGR01978 1 LKIKDLHVSVED---KEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQDLLELEPDERARA 77 (243)
T ss_pred CeEeeEEEEECC---EEEEeccceEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCcceEEECCEecCCCCHHHhhcc
Confidence 478999999963 46899999999999999999999999999999999994 799999999872
Q ss_pred -EEEEecCCCCccc-cHHHHHhcCCcc----------c----HHHHHHHHHHhcchhHHhcCCCCCccccCCCCC-CCCH
Q psy1503 154 -VSYASQEPWIFAA-TIRQNILFGLPY----------L----RRRYADVIRVCALQDDFDSLPNGDFTVVGERGA-SLSG 216 (265)
Q Consensus 154 -i~~v~Q~~~l~~~-ti~eni~~~~~~----------~----~~~~~~~~~~~~l~~~i~~l~~g~~t~vg~~g~-~LSg 216 (265)
++|++|++.+++. |++||+.+.... + .+++.++++..++...+ ...... .|||
T Consensus 78 ~i~~v~q~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~----------~~~~~~~~LS~ 147 (243)
T TIGR01978 78 GLFLAFQYPEEIPGVSNLEFLRSALNARRSARGEEPLDLLDFLKLLKAKLALLGMDEEF----------LNRSVNEGFSG 147 (243)
T ss_pred ceEeeeccccccCCcCHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHcCCchhh----------cccccccCcCH
Confidence 7899999999875 999998753210 1 11222333333332111 122333 5999
Q ss_pred HHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHH
Q psy1503 217 GQKARINLARAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGC 260 (265)
Q Consensus 217 GqrqRialARal~~~~~illLDEp~s~LD~~~~~~i~~~~i~~~ 260 (265)
|||||++|||||+.+|+++||||||++||+.+.+.+.+ .+..+
T Consensus 148 G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~-~l~~~ 190 (243)
T TIGR01978 148 GEKKRNEILQMALLEPKLAILDEIDSGLDIDALKIVAE-GINRL 190 (243)
T ss_pred HHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHH-HHHHH
Confidence 99999999999999999999999999999999988865 44444
No 216
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=100.00 E-value=2.4e-36 Score=262.22 Aligned_cols=161 Identities=24% Similarity=0.381 Sum_probs=127.2
Q ss_pred EEEEeEEEEeCCC---C-CCcceeeceEEEcCCcEEEEEcCCCChHHHHHHHHhcCcCCCccEEEEc--C----------
Q psy1503 89 VSLDNVTAQWSLQ---N-ADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSLG--G---------- 152 (265)
Q Consensus 89 i~~~~~~~~~~~~---~-~~~~l~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~--g---------- 152 (265)
++++|++++|+.. . ..++++|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++ |
T Consensus 2 l~~~~l~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~~~g~~~~~~~~~~ 81 (224)
T TIGR02324 2 LEVEDLSKTFTLHQQGGVRLPVLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLPDSGRILVRHEGAWVDLAQASP 81 (224)
T ss_pred EEEEeeEEEeecccCCCcceEEEecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEEecCCCccchhhcCH
Confidence 7899999999631 1 1468999999999999999999999999999999999999999999986 3
Q ss_pred ---------eEEEEecCCCCcc-ccHHHHHhcCC---cccH----HHHHHHHHHhcchhHHhcCCCCCccccCCCCCCCC
Q psy1503 153 ---------TVSYASQEPWIFA-ATIRQNILFGL---PYLR----RRYADVIRVCALQDDFDSLPNGDFTVVGERGASLS 215 (265)
Q Consensus 153 ---------~i~~v~Q~~~l~~-~ti~eni~~~~---~~~~----~~~~~~~~~~~l~~~i~~l~~g~~t~vg~~g~~LS 215 (265)
.++|++|++.+++ .|+.||+.+.. .... ++..++++..++.+.+ ....+.+||
T Consensus 82 ~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~----------~~~~~~~LS 151 (224)
T TIGR02324 82 REVLEVRRKTIGYVSQFLRVIPRVSALEVVAEPLLERGVPREAARARARELLARLNIPERL----------WHLPPATFS 151 (224)
T ss_pred HHHHHHHhcceEEEecccccCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhh----------hhCCcccCC
Confidence 2799999998886 59999997632 1111 1223333333332211 123467899
Q ss_pred HHHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHH
Q psy1503 216 GGQKARINLARAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGC 260 (265)
Q Consensus 216 gGqrqRialARal~~~~~illLDEp~s~LD~~~~~~i~~~~i~~~ 260 (265)
||||||++|||||+.+|+++||||||++||+.+.+.+.+ .+..+
T Consensus 152 ~G~~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~-~l~~~ 195 (224)
T TIGR02324 152 GGEQQRVNIARGFIADYPILLLDEPTASLDAANRQVVVE-LIAEA 195 (224)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHH-HHHHH
Confidence 999999999999999999999999999999999988865 44444
No 217
>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.1e-36 Score=266.71 Aligned_cols=162 Identities=25% Similarity=0.442 Sum_probs=130.9
Q ss_pred cEEEEeEEEEeCCCCCCcceeeceEEEcCCcEEEEEcCCCChHHHHHHHHhcCcCC-----CccEEEEcCe---------
Q psy1503 88 HVSLDNVTAQWSLQNADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRI-----SSGKVSLGGT--------- 153 (265)
Q Consensus 88 ~i~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~-----~~G~i~~~g~--------- 153 (265)
.++++|+++.|+. +++++|+||+|++|++++|+||||||||||+++|+|+++| ++|+|.++|.
T Consensus 3 ~l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~ 79 (249)
T PRK14253 3 KFNIENLDLFYGE---NQALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYGNIDVA 79 (249)
T ss_pred eEEEeccEEEECC---eeeeecceEEecCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEEcccccchH
Confidence 5889999999963 4689999999999999999999999999999999999986 5999999872
Q ss_pred -----EEEEecCCCCccccHHHHHhcCCcc----cH----HHHHHHHHHhcchhHHhcCCCCCccccCCCCCCCCHHHHH
Q psy1503 154 -----VSYASQEPWIFAATIRQNILFGLPY----LR----RRYADVIRVCALQDDFDSLPNGDFTVVGERGASLSGGQKA 220 (265)
Q Consensus 154 -----i~~v~Q~~~l~~~ti~eni~~~~~~----~~----~~~~~~~~~~~l~~~i~~l~~g~~t~vg~~g~~LSgGqrq 220 (265)
++|++|++.+|+.|+.||+.++... .. +++.++++..++.+.+. +.......+|||||||
T Consensus 80 ~~~~~i~~~~q~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-------~~~~~~~~~LS~G~~q 152 (249)
T PRK14253 80 DLRIKVGMVFQKPNPFPMSIYENVAYGLRAQGIKDKKVLDEVVERSLRGAALWDEVK-------DRLKSHAFGLSGGQQQ 152 (249)
T ss_pred HHHhheeEEecCCCcCcccHHHHHHhHHHhcCCCchHHHHHHHHHHHHHcCCchhhh-------HHhhcCcccCCHHHHH
Confidence 8999999999999999999875321 11 12223333344432221 2344567799999999
Q ss_pred HHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHH
Q psy1503 221 RINLARAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGC 260 (265)
Q Consensus 221 RialARal~~~~~illLDEp~s~LD~~~~~~i~~~~i~~~ 260 (265)
|++|||||+.+|+++||||||++||+.+...+.+ .+..+
T Consensus 153 rv~laral~~~p~llllDEP~~~LD~~~~~~l~~-~l~~~ 191 (249)
T PRK14253 153 RLCIARTIAMEPDVILMDEPTSALDPIATHKIEE-LMEEL 191 (249)
T ss_pred HHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHH-HHHHH
Confidence 9999999999999999999999999999888755 55544
No 218
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=100.00 E-value=2.7e-36 Score=276.85 Aligned_cols=164 Identities=20% Similarity=0.352 Sum_probs=131.3
Q ss_pred CcEEEEeEEEEeCCCC----------CCcceeeceEEEcCCcEEEEEcCCCChHHHHHHHHhcCcCCCccEEEEcCe---
Q psy1503 87 GHVSLDNVTAQWSLQN----------ADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSLGGT--- 153 (265)
Q Consensus 87 ~~i~~~~~~~~~~~~~----------~~~~l~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g~--- 153 (265)
..|+++|++++|+... ...+++|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.
T Consensus 7 ~~l~v~~l~~~~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~p~~G~I~~~G~~i~ 86 (331)
T PRK15079 7 VLLEVADLKVHFDIKDGKQWFWQPPKTLKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKATDGEVAWLGKDLL 86 (331)
T ss_pred ceEEEeCeEEEECCCCccccccccCCceEEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCCcEEEECCEECC
Confidence 4799999999996321 245899999999999999999999999999999999999999999999873
Q ss_pred -------------EEEEecCC--CCcc-ccHHHHHhcCC-----cccH----HHHHHHHHHhcchhHHhcCCCCCccccC
Q psy1503 154 -------------VSYASQEP--WIFA-ATIRQNILFGL-----PYLR----RRYADVIRVCALQDDFDSLPNGDFTVVG 208 (265)
Q Consensus 154 -------------i~~v~Q~~--~l~~-~ti~eni~~~~-----~~~~----~~~~~~~~~~~l~~~i~~l~~g~~t~vg 208 (265)
++|++|+| .+++ .|+.+||.++. .... ++..++++.+++.+. ...
T Consensus 87 ~~~~~~~~~~r~~i~~v~Q~~~~~l~p~~tv~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~vgl~~~----------~~~ 156 (331)
T PRK15079 87 GMKDDEWRAVRSDIQMIFQDPLASLNPRMTIGEIIAEPLRTYHPKLSRQEVKDRVKAMMLKVGLLPN----------LIN 156 (331)
T ss_pred cCCHHHHHHHhCceEEEecCchhhcCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChH----------Hhc
Confidence 89999998 4774 69999987531 1121 223344444444221 123
Q ss_pred CCCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHHh
Q psy1503 209 ERGASLSGGQKARINLARAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGCL 261 (265)
Q Consensus 209 ~~g~~LSgGqrqRialARal~~~~~illLDEp~s~LD~~~~~~i~~~~i~~~l 261 (265)
..+.+|||||||||+|||||+.+|+++|+||||++||..++.+|++ .+..+-
T Consensus 157 ~~p~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~-lL~~l~ 208 (331)
T PRK15079 157 RYPHEFSGGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVN-LLQQLQ 208 (331)
T ss_pred CCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHH-HHHHHH
Confidence 4567999999999999999999999999999999999999999866 444443
No 219
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.6e-36 Score=264.95 Aligned_cols=157 Identities=31% Similarity=0.496 Sum_probs=130.0
Q ss_pred EEEEeEEEEeCCCCCCcceeeceEEEcCCcEEEEEcCCCChHHHHHHHHhcCcCCCccEEEEcCe-----------EEEE
Q psy1503 89 VSLDNVTAQWSLQNADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSLGGT-----------VSYA 157 (265)
Q Consensus 89 i~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g~-----------i~~v 157 (265)
|+++|++++|+. .++++++||+|++|++++|+||||||||||+++|+|+++|++|+|.++|. ++|+
T Consensus 1 l~~~~l~~~~~~---~~il~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~i~~~ 77 (232)
T cd03300 1 IELENVSKFYGG---FVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEILLDGKDITNLPPHKRPVNTV 77 (232)
T ss_pred CEEEeEEEEeCC---eeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCChhhcceEEE
Confidence 468999999963 46999999999999999999999999999999999999999999999873 8999
Q ss_pred ecCCCCcc-ccHHHHHhcCCc---cc----HHHHHHHHHHhcchhHHhcCCCCCccccCCCCCCCCHHHHHHHHHHHHHc
Q psy1503 158 SQEPWIFA-ATIRQNILFGLP---YL----RRRYADVIRVCALQDDFDSLPNGDFTVVGERGASLSGGQKARINLARAVY 229 (265)
Q Consensus 158 ~Q~~~l~~-~ti~eni~~~~~---~~----~~~~~~~~~~~~l~~~i~~l~~g~~t~vg~~g~~LSgGqrqRialARal~ 229 (265)
+|++.+|. .|++||+.++.. .. .+++.++++..++.+.+. ....+||+|||||++|||||+
T Consensus 78 ~q~~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~lS~G~~qrl~laral~ 146 (232)
T cd03300 78 FQNYALFPHLTVFENIAFGLRLKKLPKAEIKERVAEALDLVQLEGYAN-----------RKPSQLSGGQQQRVAIARALV 146 (232)
T ss_pred ecccccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhc-----------CChhhCCHHHHHHHHHHHHHh
Confidence 99999986 499999986421 11 223344455555544433 344689999999999999999
Q ss_pred cCCCEEEEeCCCCCcCHHHHHHHHHHHHHHH
Q psy1503 230 KNADIYLLDDPLSAVDMHVGKHLFEDCISGC 260 (265)
Q Consensus 230 ~~~~illLDEp~s~LD~~~~~~i~~~~i~~~ 260 (265)
.+|+++||||||++||+.+.+.+++ .+..+
T Consensus 147 ~~p~llllDEP~~gLD~~~~~~l~~-~l~~~ 176 (232)
T cd03300 147 NEPKVLLLDEPLGALDLKLRKDMQL-ELKRL 176 (232)
T ss_pred cCCCEEEEcCCcccCCHHHHHHHHH-HHHHH
Confidence 9999999999999999999998755 44443
No 220
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2e-36 Score=267.38 Aligned_cols=162 Identities=25% Similarity=0.378 Sum_probs=129.5
Q ss_pred cEEEEeEEEEeCCCCCCcceeeceEEEcCCcEEEEEcCCCChHHHHHHHHhcCcCC-----CccEEEEcC----------
Q psy1503 88 HVSLDNVTAQWSLQNADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRI-----SSGKVSLGG---------- 152 (265)
Q Consensus 88 ~i~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~-----~~G~i~~~g---------- 152 (265)
.++++|++++|+. .++|+|+||+|++|++++|+||||||||||+++|+|+++| ++|+|.++|
T Consensus 4 ~l~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~ 80 (253)
T PRK14267 4 AIETVNLRVYYGS---NHVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSPDVDP 80 (253)
T ss_pred eEEEEeEEEEeCC---eeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccCh
Confidence 6899999999963 4689999999999999999999999999999999999987 499999876
Q ss_pred -----eEEEEecCCCCccc-cHHHHHhcCCcc-----cH----HHHHHHHHHhcchhHHhcCCCCCccccCCCCCCCCHH
Q psy1503 153 -----TVSYASQEPWIFAA-TIRQNILFGLPY-----LR----RRYADVIRVCALQDDFDSLPNGDFTVVGERGASLSGG 217 (265)
Q Consensus 153 -----~i~~v~Q~~~l~~~-ti~eni~~~~~~-----~~----~~~~~~~~~~~l~~~i~~l~~g~~t~vg~~g~~LSgG 217 (265)
.++|++|++.+|+. |+.||+.++... .. ++..++++..++...+. ........+||||
T Consensus 81 ~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LS~G 153 (253)
T PRK14267 81 IEVRREVGMVFQYPNPFPHLTIYDNVAIGVKLNGLVKSKKELDERVEWALKKAALWDEVK-------DRLNDYPSNLSGG 153 (253)
T ss_pred HHHhhceeEEecCCccCCCCcHHHHHHHHHHhcCccCCHHHHHHHHHHHHHHcCCccchh-------hhhccChhhCCHH
Confidence 27999999999975 999999864211 11 12233334333322211 1234567899999
Q ss_pred HHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHH
Q psy1503 218 QKARINLARAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGC 260 (265)
Q Consensus 218 qrqRialARal~~~~~illLDEp~s~LD~~~~~~i~~~~i~~~ 260 (265)
||||++||||++++|+++||||||++||+.+...+++ .+..+
T Consensus 154 ~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~-~l~~~ 195 (253)
T PRK14267 154 QRQRLVIARALAMKPKILLMDEPTANIDPVGTAKIEE-LLFEL 195 (253)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHH-HHHHH
Confidence 9999999999999999999999999999999988755 44443
No 221
>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.4e-36 Score=268.14 Aligned_cols=163 Identities=21% Similarity=0.378 Sum_probs=132.0
Q ss_pred CcEEEEeEEEEeCCCCCCcceeeceEEEcCCcEEEEEcCCCChHHHHHHHHhcCcCC-----CccEEEEcCe--------
Q psy1503 87 GHVSLDNVTAQWSLQNADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRI-----SSGKVSLGGT-------- 153 (265)
Q Consensus 87 ~~i~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~-----~~G~i~~~g~-------- 153 (265)
..++++|++++|++ .++++|+||+|++|++++|+|+||||||||+++|+|+++| ++|+|.++|.
T Consensus 6 ~~l~~~~l~~~~~~---~~il~~isl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~ 82 (259)
T PRK14260 6 PAIKVKDLSFYYNT---SKAIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVDFFGQNIYDPRIN 82 (259)
T ss_pred ceEEEEEEEEEECC---eEeecceEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcCcccCCccceEEEECCEeccccccc
Confidence 36899999999963 4589999999999999999999999999999999999985 4899998762
Q ss_pred -------EEEEecCCCCccccHHHHHhcCCc----cc----HHHHHHHHHHhcchhHHhcCCCCCccccCCCCCCCCHHH
Q psy1503 154 -------VSYASQEPWIFAATIRQNILFGLP----YL----RRRYADVIRVCALQDDFDSLPNGDFTVVGERGASLSGGQ 218 (265)
Q Consensus 154 -------i~~v~Q~~~l~~~ti~eni~~~~~----~~----~~~~~~~~~~~~l~~~i~~l~~g~~t~vg~~g~~LSgGq 218 (265)
++|++|++.+|+.|+.||+.++.. .. .++..++++.+++.+.+.. .....+..|||||
T Consensus 83 ~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~-------~~~~~~~~LS~G~ 155 (259)
T PRK14260 83 INRLRRQIGMVFQRPNPFPMSIYENVAYGVRISAKLPQADLDEIVESALKGAALWQEVKD-------KLNKSALGLSGGQ 155 (259)
T ss_pred hHhhhhheEEEecccccCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhhh-------HhcCCcccCCHHH
Confidence 899999999999999999986421 11 1233444555555433221 2345677999999
Q ss_pred HHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHH
Q psy1503 219 KARINLARAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGC 260 (265)
Q Consensus 219 rqRialARal~~~~~illLDEp~s~LD~~~~~~i~~~~i~~~ 260 (265)
|||++|||||+++|+++||||||++||+.+...+++ .+..+
T Consensus 156 ~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~-~l~~~ 196 (259)
T PRK14260 156 QQRLCIARALAIKPKVLLMDEPCSALDPIATMKVEE-LIHSL 196 (259)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHH-HHHHH
Confidence 999999999999999999999999999999988765 44333
No 222
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.2e-36 Score=265.34 Aligned_cols=163 Identities=26% Similarity=0.404 Sum_probs=131.0
Q ss_pred CcEEEEeEEEEeCCCCCCcceeeceEEEcCCcEEEEEcCCCChHHHHHHHHhcCcC--C---CccEEEEcCe--------
Q psy1503 87 GHVSLDNVTAQWSLQNADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELR--I---SSGKVSLGGT-------- 153 (265)
Q Consensus 87 ~~i~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~--~---~~G~i~~~g~-------- 153 (265)
+.++++|++++|+. .++|+|+||+|++|++++|+||||||||||+++|+|+++ | ++|+|.++|.
T Consensus 3 ~~l~~~nl~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~ 79 (252)
T PRK14256 3 NKVKLEQLNVHFGK---NHAVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGVD 79 (252)
T ss_pred cEEEEEEEEEEeCC---eeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEEECCEEcccccCC
Confidence 46899999999963 469999999999999999999999999999999999986 4 6899999872
Q ss_pred -------EEEEecCCCCcc-ccHHHHHhcCCc----cc----HHHHHHHHHHhcchhHHhcCCCCCccccCCCCCCCCHH
Q psy1503 154 -------VSYASQEPWIFA-ATIRQNILFGLP----YL----RRRYADVIRVCALQDDFDSLPNGDFTVVGERGASLSGG 217 (265)
Q Consensus 154 -------i~~v~Q~~~l~~-~ti~eni~~~~~----~~----~~~~~~~~~~~~l~~~i~~l~~g~~t~vg~~g~~LSgG 217 (265)
++|++|++.+|+ .|++||+.++.. .. .++..++++.+++...+. ......+.+||||
T Consensus 80 ~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LS~G 152 (252)
T PRK14256 80 PVSIRRRVGMVFQKPNPFPAMSIYDNVIAGYKLNGRVNRSEADEIVESSLKRVALWDEVK-------DRLKSNAMELSGG 152 (252)
T ss_pred hHHhhccEEEEecCCCCCCcCcHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhh-------HHhhCCcCcCCHH
Confidence 899999999997 599999986421 11 122334444555433221 1233456799999
Q ss_pred HHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHH
Q psy1503 218 QKARINLARAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGC 260 (265)
Q Consensus 218 qrqRialARal~~~~~illLDEp~s~LD~~~~~~i~~~~i~~~ 260 (265)
||||++||||++.+|+++||||||++||+.+...+.+ .+..+
T Consensus 153 ~~qrl~laral~~~p~llllDEP~~gLD~~~~~~l~~-~l~~~ 194 (252)
T PRK14256 153 QQQRLCIARTIAVKPEVILMDEPASALDPISTLKIEE-LIEEL 194 (252)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHH-HHHHH
Confidence 9999999999999999999999999999999988855 45544
No 223
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.7e-36 Score=269.72 Aligned_cols=160 Identities=26% Similarity=0.453 Sum_probs=129.2
Q ss_pred CcEEEEeEEEEeCCCCCCcceeeceEEEcCCcEEEEEcCCCChHHHHHHHHhcCcCCCccEEEEcC----------eEEE
Q psy1503 87 GHVSLDNVTAQWSLQNADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSLGG----------TVSY 156 (265)
Q Consensus 87 ~~i~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g----------~i~~ 156 (265)
..++++|++++|++ .+++++|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++| .++|
T Consensus 5 ~~l~~~~l~~~~~~--~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~i~~ 82 (272)
T PRK15056 5 AGIVVNDVTVTWRN--GHTALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLASGKISILGQPTRQALQKNLVAY 82 (272)
T ss_pred ceEEEEeEEEEecC--CcEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEhHHhhccceEEE
Confidence 36899999999963 24699999999999999999999999999999999999999999999987 3999
Q ss_pred EecCCCC---ccccHHHHHhcCCc--------c---cHHHHHHHHHHhcchhHHhcCCCCCccccCCCCCCCCHHHHHHH
Q psy1503 157 ASQEPWI---FAATIRQNILFGLP--------Y---LRRRYADVIRVCALQDDFDSLPNGDFTVVGERGASLSGGQKARI 222 (265)
Q Consensus 157 v~Q~~~l---~~~ti~eni~~~~~--------~---~~~~~~~~~~~~~l~~~i~~l~~g~~t~vg~~g~~LSgGqrqRi 222 (265)
++|++.+ ++.++++|+.++.. . ..++..++++..++.+.. .....+||||||||+
T Consensus 83 v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~-----------~~~~~~LSgG~~qrv 151 (272)
T PRK15056 83 VPQSEEVDWSFPVLVEDVVMMGRYGHMGWLRRAKKRDRQIVTAALARVDMVEFR-----------HRQIGELSGGQKKRV 151 (272)
T ss_pred eccccccccCCCcchhhheecccccccccccCCCHHHHHHHHHHHHHcCChhHh-----------cCCcccCCHHHHHHH
Confidence 9999865 34578999865321 0 112334445555554332 234568999999999
Q ss_pred HHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHH
Q psy1503 223 NLARAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGC 260 (265)
Q Consensus 223 alARal~~~~~illLDEp~s~LD~~~~~~i~~~~i~~~ 260 (265)
+|||||+.+|+++||||||++||+.+.+.+.+ .+..+
T Consensus 152 ~laraL~~~p~llllDEPt~~LD~~~~~~l~~-~L~~~ 188 (272)
T PRK15056 152 FLARAIAQQGQVILLDEPFTGVDVKTEARIIS-LLREL 188 (272)
T ss_pred HHHHHHhcCCCEEEEeCCCccCCHHHHHHHHH-HHHHH
Confidence 99999999999999999999999999998855 45444
No 224
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=100.00 E-value=2.9e-36 Score=267.87 Aligned_cols=159 Identities=20% Similarity=0.388 Sum_probs=129.6
Q ss_pred cEEEEeEEEEeCCCCCCcceeeceEEEcCCcEEEEEcCCCChHHHHHHHHhcCcCCC---ccEEEEcCe-----------
Q psy1503 88 HVSLDNVTAQWSLQNADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRIS---SGKVSLGGT----------- 153 (265)
Q Consensus 88 ~i~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~---~G~i~~~g~----------- 153 (265)
.++++|++++|+. .++++++||++++|++++|+||||||||||+++|+|+++|+ +|+|.++|.
T Consensus 4 ~l~~~nl~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~~~~G~i~~~g~~~~~~~~~~~~ 80 (262)
T PRK09984 4 IIRVEKLAKTFNQ---HQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREGRLARD 80 (262)
T ss_pred EEEEeeEEEEeCC---eEEEecceEEEcCCcEEEEECCCCCCHHHHHHHHhccCCCCCCCceEEEECCEecccccccchh
Confidence 6899999999963 46899999999999999999999999999999999999986 499998872
Q ss_pred -------EEEEecCCCCcc-ccHHHHHhcCCcc------------c---HHHHHHHHHHhcchhHHhcCCCCCccccCCC
Q psy1503 154 -------VSYASQEPWIFA-ATIRQNILFGLPY------------L---RRRYADVIRVCALQDDFDSLPNGDFTVVGER 210 (265)
Q Consensus 154 -------i~~v~Q~~~l~~-~ti~eni~~~~~~------------~---~~~~~~~~~~~~l~~~i~~l~~g~~t~vg~~ 210 (265)
++|++|++.+|+ .|+.||+.++... . .+++.++++..++... ....
T Consensus 81 ~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~ 149 (262)
T PRK09984 81 IRKSRANTGYIFQQFNLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQALTRVGMVHF-----------AHQR 149 (262)
T ss_pred HHHHHhheEEEccccccccCCcHHHHHHhhhcccccchhhhcccccHHHHHHHHHHHHHcCCHHH-----------HhCC
Confidence 799999999887 5999999875310 0 1223344444444332 2345
Q ss_pred CCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHHh
Q psy1503 211 GASLSGGQKARINLARAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGCL 261 (265)
Q Consensus 211 g~~LSgGqrqRialARal~~~~~illLDEp~s~LD~~~~~~i~~~~i~~~l 261 (265)
..+||||||||++|||||+.+|+++||||||++||..+.+.+.+ .+..+.
T Consensus 150 ~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~-~l~~~~ 199 (262)
T PRK09984 150 VSTLSGGQQQRVAIARALMQQAKVILADEPIASLDPESARIVMD-TLRDIN 199 (262)
T ss_pred ccccCHHHHHHHHHHHHHhcCCCEEEecCccccCCHHHHHHHHH-HHHHHH
Confidence 57899999999999999999999999999999999999988855 455443
No 225
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.1e-36 Score=266.86 Aligned_cols=162 Identities=28% Similarity=0.445 Sum_probs=130.6
Q ss_pred cEEEEeEEEEeCCCCCCcceeeceEEEcCCcEEEEEcCCCChHHHHHHHHhcCcCC-----CccEEEEcC----------
Q psy1503 88 HVSLDNVTAQWSLQNADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRI-----SSGKVSLGG---------- 152 (265)
Q Consensus 88 ~i~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~-----~~G~i~~~g---------- 152 (265)
.|+++|+++.|++ .++++++||+|++|++++|+||||||||||+++|+|+++| ++|+|.++|
T Consensus 3 ~l~~~~l~~~~~~---~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~i~g~~~~~~~~~~ 79 (250)
T PRK14262 3 IIEIENFSAYYGE---KKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQDIYDPQLDV 79 (250)
T ss_pred eEEEEeeEEEeCC---ceeEeeeeEeecCCCEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEcccchhhH
Confidence 5899999999963 4689999999999999999999999999999999999874 899999886
Q ss_pred -----eEEEEecCCCCccccHHHHHhcCCcc----cH----HHHHHHHHHhcchhHHhcCCCCCccccCCCCCCCCHHHH
Q psy1503 153 -----TVSYASQEPWIFAATIRQNILFGLPY----LR----RRYADVIRVCALQDDFDSLPNGDFTVVGERGASLSGGQK 219 (265)
Q Consensus 153 -----~i~~v~Q~~~l~~~ti~eni~~~~~~----~~----~~~~~~~~~~~l~~~i~~l~~g~~t~vg~~g~~LSgGqr 219 (265)
.++|++|++.+|+.|++||+.++... .. +...++++..++...+. ........+||||||
T Consensus 80 ~~~~~~i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LS~Gq~ 152 (250)
T PRK14262 80 TEYRKKVGMVFQKPTPFPMSIYDNVAFGPRIHGVKSKHKLDRIVEESLKKAALWDEVK-------SELNKPGTRLSGGQQ 152 (250)
T ss_pred HHhhhhEEEEecCCccCcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCchhH-------HHHhCChhhcCHHHH
Confidence 28999999999999999999875211 11 11223333344432221 224566789999999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHH
Q psy1503 220 ARINLARAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGC 260 (265)
Q Consensus 220 qRialARal~~~~~illLDEp~s~LD~~~~~~i~~~~i~~~ 260 (265)
||++||||++.+|+++||||||++||+.+...+.+ .+..+
T Consensus 153 qr~~la~al~~~p~llllDEP~~~LD~~~~~~l~~-~l~~~ 192 (250)
T PRK14262 153 QRLCIARALAVEPEVILLDEPTSALDPIATQRIEK-LLEEL 192 (250)
T ss_pred HHHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHH-HHHHH
Confidence 99999999999999999999999999999988754 44444
No 226
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=100.00 E-value=1.1e-36 Score=264.99 Aligned_cols=165 Identities=23% Similarity=0.362 Sum_probs=128.4
Q ss_pred EEEEeEEEEeCCCC-CCcceeeceEEEcCCcEEEEEcCCCChHHHHHHHHhcCcC---CCccEEEEcCe----------E
Q psy1503 89 VSLDNVTAQWSLQN-ADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELR---ISSGKVSLGGT----------V 154 (265)
Q Consensus 89 i~~~~~~~~~~~~~-~~~~l~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~---~~~G~i~~~g~----------i 154 (265)
+.++|++++|++.+ ..++++|+||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|. +
T Consensus 4 ~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~~~~~~~~G~i~~~g~~~~~~~~~~~i 83 (226)
T cd03234 4 LPWWDVGLKAKNWNKYARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRKPDQFQKCV 83 (226)
T ss_pred ceeecceeeeecCccccccccCceEEEcCCeEEEEECCCCCCHHHHHHHHhCccCCCCCCceEEEECCEECChHHhcccE
Confidence 57899999997532 3579999999999999999999999999999999999999 99999999883 8
Q ss_pred EEEecCCCCccc-cHHHHHhcCCcc-----cHHHHH-HHHHHhcchhHHhcCCCCCccccCCCCCCCCHHHHHHHHHHHH
Q psy1503 155 SYASQEPWIFAA-TIRQNILFGLPY-----LRRRYA-DVIRVCALQDDFDSLPNGDFTVVGERGASLSGGQKARINLARA 227 (265)
Q Consensus 155 ~~v~Q~~~l~~~-ti~eni~~~~~~-----~~~~~~-~~~~~~~l~~~i~~l~~g~~t~vg~~g~~LSgGqrqRialARa 227 (265)
+|++|++.+|+. |++||+.++... ...... ...+.. .+..+ ++.........+|||||+||++||||
T Consensus 84 ~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~----~l~~~--~l~~~~~~~~~~LS~G~~qrl~lara 157 (226)
T cd03234 84 AYVRQDDILLPGLTVRETLTYTAILRLPRKSSDAIRKKRVEDV----LLRDL--ALTRIGGNLVKGISGGERRRVSIAVQ 157 (226)
T ss_pred EEeCCCCccCcCCcHHHHHHHHHHhhcccccchHHHHHHHHHH----HHHhh--cchhhhcccccCcCHHHHHHHHHHHH
Confidence 999999999976 999999874211 011100 000000 11111 11122334567999999999999999
Q ss_pred HccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHH
Q psy1503 228 VYKNADIYLLDDPLSAVDMHVGKHLFEDCISGC 260 (265)
Q Consensus 228 l~~~~~illLDEp~s~LD~~~~~~i~~~~i~~~ 260 (265)
|+.+|+++||||||++||+.+...+.+ .+..+
T Consensus 158 l~~~p~illlDEP~~gLD~~~~~~~~~-~l~~~ 189 (226)
T cd03234 158 LLWDPKVLILDEPTSGLDSFTALNLVS-TLSQL 189 (226)
T ss_pred HHhCCCEEEEeCCCcCCCHHHHHHHHH-HHHHH
Confidence 999999999999999999999988866 44443
No 227
>PRK14238 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.7e-36 Score=268.84 Aligned_cols=164 Identities=23% Similarity=0.365 Sum_probs=130.8
Q ss_pred CcEEEEeEEEEeCCCCCCcceeeceEEEcCCcEEEEEcCCCChHHHHHHHHhcCcC-----CCccEEEEcCe--------
Q psy1503 87 GHVSLDNVTAQWSLQNADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELR-----ISSGKVSLGGT-------- 153 (265)
Q Consensus 87 ~~i~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~-----~~~G~i~~~g~-------- 153 (265)
..++++|++++|+. .++|+|+||+|++|++++|+|+||||||||+++|+|+++ |++|+|.++|.
T Consensus 23 ~~l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~ 99 (271)
T PRK14238 23 VVFDTQNLNLWYGE---DHALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFDKSYS 99 (271)
T ss_pred eEEEEeeeEEEECC---cceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceeEEECCEEccccccc
Confidence 36999999999963 458999999999999999999999999999999999987 69999998872
Q ss_pred -------EEEEecCCCCccccHHHHHhcCCc---c-cHHH----HHHHHHHhcchhHHhcCCCCCccccCCCCCCCCHHH
Q psy1503 154 -------VSYASQEPWIFAATIRQNILFGLP---Y-LRRR----YADVIRVCALQDDFDSLPNGDFTVVGERGASLSGGQ 218 (265)
Q Consensus 154 -------i~~v~Q~~~l~~~ti~eni~~~~~---~-~~~~----~~~~~~~~~l~~~i~~l~~g~~t~vg~~g~~LSgGq 218 (265)
++|++|++.+|+.|++||+.++.. . +... ..++++..++.+.+ .......+.+|||||
T Consensus 100 ~~~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l-------~~~~~~~~~~LSgGe 172 (271)
T PRK14238 100 VEELRTNVGMVFQKPNPFPKSIYDNVTYGPKIHGIKDKKTLDEIVEKSLRGAAIWDEL-------KDRLHDNAYGLSGGQ 172 (271)
T ss_pred HHHHhhhEEEEecCCccccccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchH-------HHHHhcCcccCCHHH
Confidence 899999999998899999986421 1 1111 12222222221112 123456678999999
Q ss_pred HHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHHh
Q psy1503 219 KARINLARAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGCL 261 (265)
Q Consensus 219 rqRialARal~~~~~illLDEp~s~LD~~~~~~i~~~~i~~~l 261 (265)
|||++|||||+.+|+++||||||++||+.+...+.+ .+..+.
T Consensus 173 ~qrv~laraL~~~p~lllLDEPt~~LD~~~~~~l~~-~l~~~~ 214 (271)
T PRK14238 173 QQRLCIARCLAIEPDVILMDEPTSALDPISTLKVEE-LVQELK 214 (271)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHH-HHHHHH
Confidence 999999999999999999999999999999988865 554443
No 228
>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.4e-36 Score=272.72 Aligned_cols=164 Identities=27% Similarity=0.405 Sum_probs=132.8
Q ss_pred CCcEEEEeEEEEeCCCCCCcceeeceEEEcCCcEEEEEcCCCChHHHHHHHHhcCcC-----CCccEEEEcC--------
Q psy1503 86 KGHVSLDNVTAQWSLQNADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELR-----ISSGKVSLGG-------- 152 (265)
Q Consensus 86 ~~~i~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~-----~~~G~i~~~g-------- 152 (265)
...|+++|++++|+. .++|+++||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|
T Consensus 43 ~~~l~i~nl~~~~~~---~~iL~~is~~i~~Ge~~~IvG~nGsGKSTLl~~L~Gl~~~~~~~p~~G~I~i~g~~i~~~~~ 119 (305)
T PRK14264 43 DAKLSVEDLDVYYGD---DHALKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDIYQDGV 119 (305)
T ss_pred CceEEEEEEEEEeCC---eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccc
Confidence 347999999999963 468999999999999999999999999999999999986 6899999886
Q ss_pred -------eEEEEecCCCCccccHHHHHhcCCcc--------------------cHHHHHHHHHHhcchhHHhcCCCCCcc
Q psy1503 153 -------TVSYASQEPWIFAATIRQNILFGLPY--------------------LRRRYADVIRVCALQDDFDSLPNGDFT 205 (265)
Q Consensus 153 -------~i~~v~Q~~~l~~~ti~eni~~~~~~--------------------~~~~~~~~~~~~~l~~~i~~l~~g~~t 205 (265)
.++|++|++.+|+.|++||+.++... ..+++.++++.+++.. +..+
T Consensus 120 ~~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------~~~~ 192 (305)
T PRK14264 120 NLVELRKRVGMVFQSPNPFPKSIRENISYGPRKHGDINTGLLARLLGRDDKDAEDELVERSLRQAALWD-------EVND 192 (305)
T ss_pred cHHHHhhceEEEccCCccccccHHHHHHhHHhhcccccccccccccccCchHHHHHHHHHHHHHcCCch-------hhhH
Confidence 28999999999989999999875311 0112233334443322 2223
Q ss_pred ccCCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHH
Q psy1503 206 VVGERGASLSGGQKARINLARAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGC 260 (265)
Q Consensus 206 ~vg~~g~~LSgGqrqRialARal~~~~~illLDEp~s~LD~~~~~~i~~~~i~~~ 260 (265)
.....+.+||||||||++|||||+++|+|+||||||++||+.+...+.+ .+..+
T Consensus 193 ~~~~~~~~LSgGq~qrv~LAraL~~~p~lLLLDEPtsgLD~~~~~~l~~-~L~~~ 246 (305)
T PRK14264 193 RLDDNALGLSGGQQQRLCIARCLAVDPEVILMDEPASALDPIATSKIED-LIEEL 246 (305)
T ss_pred HhcCccccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHH-HHHHH
Confidence 4556778999999999999999999999999999999999999988754 44444
No 229
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=100.00 E-value=3.4e-36 Score=266.58 Aligned_cols=157 Identities=24% Similarity=0.381 Sum_probs=128.3
Q ss_pred EEEEeEEEEeCCCCCCcceeeceEEEcCCcEEEEEcCCCChHHHHHHHHhcCcCCCccEEEEcCe-------------EE
Q psy1503 89 VSLDNVTAQWSLQNADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSLGGT-------------VS 155 (265)
Q Consensus 89 i~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g~-------------i~ 155 (265)
++++|+++.|+. .++|+|+||++++|++++|+||||||||||+++|+|+++|++|+|.++|. ++
T Consensus 2 l~~~~l~~~~~~---~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 78 (256)
T TIGR03873 2 LRLSRVSWSAGG---RLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDLAGVDLHGLSRRARARRVA 78 (256)
T ss_pred ceEEeEEEEECC---EEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEEcccCCHHHHhhheE
Confidence 689999999963 46999999999999999999999999999999999999999999999882 89
Q ss_pred EEecCCCCc-cccHHHHHhcCCc-c----------cHHHHHHHHHHhcchhHHhcCCCCCccccCCCCCCCCHHHHHHHH
Q psy1503 156 YASQEPWIF-AATIRQNILFGLP-Y----------LRRRYADVIRVCALQDDFDSLPNGDFTVVGERGASLSGGQKARIN 223 (265)
Q Consensus 156 ~v~Q~~~l~-~~ti~eni~~~~~-~----------~~~~~~~~~~~~~l~~~i~~l~~g~~t~vg~~g~~LSgGqrqRia 223 (265)
|++|++.++ ..|++||+.++.. . ..+++.++++.+++.+. .......||||||||++
T Consensus 79 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LS~G~~qrl~ 147 (256)
T TIGR03873 79 LVEQDSDTAVPLTVRDVVALGRIPHRSLWAGDSPHDAAVVDRALARTELSHL-----------ADRDMSTLSGGERQRVH 147 (256)
T ss_pred EecccCccCCCCCHHHHHHhcchhhhhhccCCCHHHHHHHHHHHHHcCcHhh-----------hcCCcccCCHHHHHHHH
Confidence 999998654 5799999987521 0 01123334444444322 23456789999999999
Q ss_pred HHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHH
Q psy1503 224 LARAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGC 260 (265)
Q Consensus 224 lARal~~~~~illLDEp~s~LD~~~~~~i~~~~i~~~ 260 (265)
||||++.+|+++||||||++||+.+...+.+ ++..+
T Consensus 148 la~al~~~p~llllDEPt~~LD~~~~~~l~~-~l~~~ 183 (256)
T TIGR03873 148 VARALAQEPKLLLLDEPTNHLDVRAQLETLA-LVREL 183 (256)
T ss_pred HHHHHhcCCCEEEEcCccccCCHHHHHHHHH-HHHHH
Confidence 9999999999999999999999999988755 44444
No 230
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=100.00 E-value=3.2e-36 Score=264.05 Aligned_cols=157 Identities=29% Similarity=0.503 Sum_probs=128.7
Q ss_pred EEEEeEEEEeCCCCCCcceeeceEEEcCCcEEEEEcCCCChHHHHHHHHhcCcCCCccEEEEcCe-----------EEEE
Q psy1503 89 VSLDNVTAQWSLQNADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSLGGT-----------VSYA 157 (265)
Q Consensus 89 i~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g~-----------i~~v 157 (265)
++++|++++|+. +++++++||++.+|++++|+||||||||||+++|+|+++|++|+|.++|. ++|+
T Consensus 1 i~i~~l~~~~~~---~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~i~g~~~~~~~~~~~~i~~~ 77 (237)
T TIGR00968 1 IEIANISKRFGS---FQALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPDSGRIRLNGQDATRVHARDRKIGFV 77 (237)
T ss_pred CEEEEEEEEECC---eeeeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCChhhcCEEEE
Confidence 468999999963 46999999999999999999999999999999999999999999999872 8999
Q ss_pred ecCCCCccc-cHHHHHhcCCcc---c----HHHHHHHHHHhcchhHHhcCCCCCccccCCCCCCCCHHHHHHHHHHHHHc
Q psy1503 158 SQEPWIFAA-TIRQNILFGLPY---L----RRRYADVIRVCALQDDFDSLPNGDFTVVGERGASLSGGQKARINLARAVY 229 (265)
Q Consensus 158 ~Q~~~l~~~-ti~eni~~~~~~---~----~~~~~~~~~~~~l~~~i~~l~~g~~t~vg~~g~~LSgGqrqRialARal~ 229 (265)
||++.+|+. |+.||+.++... . .++..++++..++.+. ......+||+||+||++||||++
T Consensus 78 ~q~~~~~~~~t~~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~lS~G~~qrl~laral~ 146 (237)
T TIGR00968 78 FQHYALFKHLTVRDNIAFGLEIRKHPKAKIKARVEELLELVQLEGL-----------GDRYPNQLSGGQRQRVALARALA 146 (237)
T ss_pred ecChhhccCCcHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCCHhH-----------hhCChhhCCHHHHHHHHHHHHHh
Confidence 999999975 999999875321 1 1222333444444322 23445689999999999999999
Q ss_pred cCCCEEEEeCCCCCcCHHHHHHHHHHHHHHH
Q psy1503 230 KNADIYLLDDPLSAVDMHVGKHLFEDCISGC 260 (265)
Q Consensus 230 ~~~~illLDEp~s~LD~~~~~~i~~~~i~~~ 260 (265)
++|+++||||||++||+.+.+.+++ .+..+
T Consensus 147 ~~p~llllDEP~~~LD~~~~~~~~~-~l~~~ 176 (237)
T TIGR00968 147 VEPQVLLLDEPFGALDAKVRKELRS-WLRKL 176 (237)
T ss_pred cCCCEEEEcCCcccCCHHHHHHHHH-HHHHH
Confidence 9999999999999999999988866 44433
No 231
>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.1e-36 Score=268.95 Aligned_cols=164 Identities=27% Similarity=0.415 Sum_probs=131.9
Q ss_pred CCcEEEEeEEEEeCCCCCCcceeeceEEEcCCcEEEEEcCCCChHHHHHHHHhcCcCC-----CccEEEEcC--------
Q psy1503 86 KGHVSLDNVTAQWSLQNADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRI-----SSGKVSLGG-------- 152 (265)
Q Consensus 86 ~~~i~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~-----~~G~i~~~g-------- 152 (265)
...|+++|++++|+. .++|+++||+|++|++++|+||||||||||+++|+|+++| ++|+|.++|
T Consensus 18 ~~~l~~~nl~~~~~~---~~~l~~vs~~i~~Ge~~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~l~~~~~ 94 (274)
T PRK14265 18 HSVFEVEGVKVFYGG---FLALVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNIYDSQI 94 (274)
T ss_pred CceEEEeeEEEEeCC---eEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhcccccccCCCcCceEEECCEecccccc
Confidence 347999999999963 4689999999999999999999999999999999999863 689999876
Q ss_pred -------eEEEEecCCCCccccHHHHHhcCCc---c---cHHHHHHHHHHhcchhHHhcCCCCCccccCCCCCCCCHHHH
Q psy1503 153 -------TVSYASQEPWIFAATIRQNILFGLP---Y---LRRRYADVIRVCALQDDFDSLPNGDFTVVGERGASLSGGQK 219 (265)
Q Consensus 153 -------~i~~v~Q~~~l~~~ti~eni~~~~~---~---~~~~~~~~~~~~~l~~~i~~l~~g~~t~vg~~g~~LSgGqr 219 (265)
.++|++|++.+|+.|+.||+.++.. . .++...++++.+++...+. ......+..||||||
T Consensus 95 ~~~~~~~~i~~v~q~~~l~~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~-------~~~~~~~~~LSgGq~ 167 (274)
T PRK14265 95 NSVKLRRQVGMVFQRPNPFPKSIYENIAFAPRANGYKGNLDELVEDSLRRAAIWEEVK-------DKLKEKGTALSGGQQ 167 (274)
T ss_pred hhHHHhhcEEEEccCCccccccHHHHHHhHHHhcCchHHHHHHHHHHHHHcccchhhH-------HHhcCCcccCCHHHH
Confidence 2899999999998899999987532 1 1122233444444433222 123456789999999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHH
Q psy1503 220 ARINLARAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGC 260 (265)
Q Consensus 220 qRialARal~~~~~illLDEp~s~LD~~~~~~i~~~~i~~~ 260 (265)
||++|||||+.+|+++||||||++||+.+...+++ .+..+
T Consensus 168 qrv~LAraL~~~p~lllLDEPt~~LD~~~~~~l~~-~L~~~ 207 (274)
T PRK14265 168 QRLCIARAIAMKPDVLLMDEPCSALDPISTRQVEE-LCLEL 207 (274)
T ss_pred HHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHH-HHHHH
Confidence 99999999999999999999999999999988865 44443
No 232
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.9e-36 Score=251.92 Aligned_cols=129 Identities=35% Similarity=0.654 Sum_probs=116.8
Q ss_pred EEEEeEEEEeCCCCCCcceeeceEEEcCCcEEEEEcCCCChHHHHHHHHhcCcCCCccEEEEcCe-------------EE
Q psy1503 89 VSLDNVTAQWSLQNADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSLGGT-------------VS 155 (265)
Q Consensus 89 i~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g~-------------i~ 155 (265)
++++|++++|+.. ..++++++||++++|++++|+||||||||||+++|+|+++|++|+|.++|. ++
T Consensus 1 l~~~~l~~~~~~~-~~~~l~~i~~~i~~G~~~~l~G~nGsGKstLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (171)
T cd03228 1 IEFKNVSFSYPGR-PKPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEILIDGVDLRDLDLESLRKNIA 79 (171)
T ss_pred CEEEEEEEEcCCC-CcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhhhcCHHHHHhhEE
Confidence 4689999999642 136899999999999999999999999999999999999999999999883 89
Q ss_pred EEecCCCCccccHHHHHhcCCcccHHHHHHHHHHhcchhHHhcCCCCCccccCCCCCCCCHHHHHHHHHHHHHccCCCEE
Q psy1503 156 YASQEPWIFAATIRQNILFGLPYLRRRYADVIRVCALQDDFDSLPNGDFTVVGERGASLSGGQKARINLARAVYKNADIY 235 (265)
Q Consensus 156 ~v~Q~~~l~~~ti~eni~~~~~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~vg~~g~~LSgGqrqRialARal~~~~~il 235 (265)
|++|++.+|+.|+.||+ ||||||||++||||++.+|+++
T Consensus 80 ~~~~~~~~~~~t~~e~l-----------------------------------------LS~G~~~rl~la~al~~~p~ll 118 (171)
T cd03228 80 YVPQDPFLFSGTIRENI-----------------------------------------LSGGQRQRIAIARALLRDPPIL 118 (171)
T ss_pred EEcCCchhccchHHHHh-----------------------------------------hCHHHHHHHHHHHHHhcCCCEE
Confidence 99999999988999997 9999999999999999999999
Q ss_pred EEeCCCCCcCHHHHHHHHHHHHHHH
Q psy1503 236 LLDDPLSAVDMHVGKHLFEDCISGC 260 (265)
Q Consensus 236 lLDEp~s~LD~~~~~~i~~~~i~~~ 260 (265)
||||||++||+.+..++.+ .+..+
T Consensus 119 llDEP~~gLD~~~~~~l~~-~l~~~ 142 (171)
T cd03228 119 ILDEATSALDPETEALILE-ALRAL 142 (171)
T ss_pred EEECCCcCCCHHHHHHHHH-HHHHh
Confidence 9999999999999888755 44444
No 233
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.3e-36 Score=278.49 Aligned_cols=156 Identities=27% Similarity=0.515 Sum_probs=129.2
Q ss_pred EEEEeEEEEeCCCCCCcceeeceEEEcCCcEEEEEcCCCChHHHHHHHHhcCcCCCccEEEEcC----------------
Q psy1503 89 VSLDNVTAQWSLQNADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSLGG---------------- 152 (265)
Q Consensus 89 i~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g---------------- 152 (265)
|++ |++++|+. . .+ |+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|
T Consensus 2 l~~-~l~k~~~~---~-~~-~vsl~i~~Ge~~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~~~~~~~~~~~~~~~ 75 (352)
T PRK11144 2 LEL-NFKQQLGD---L-CL-TVNLTLPAQGITAIFGRSGAGKTSLINAISGLTRPQKGRIVLNGRVLFDAEKGICLPPEK 75 (352)
T ss_pred eEE-EEEEEeCC---E-EE-EEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccchhh
Confidence 677 89999963 2 23 89999999999999999999999999999999999999999876
Q ss_pred -eEEEEecCCCCcc-ccHHHHHhcCCcc-cHHHHHHHHHHhcchhHHhcCCCCCccccCCCCCCCCHHHHHHHHHHHHHc
Q psy1503 153 -TVSYASQEPWIFA-ATIRQNILFGLPY-LRRRYADVIRVCALQDDFDSLPNGDFTVVGERGASLSGGQKARINLARAVY 229 (265)
Q Consensus 153 -~i~~v~Q~~~l~~-~ti~eni~~~~~~-~~~~~~~~~~~~~l~~~i~~l~~g~~t~vg~~g~~LSgGqrqRialARal~ 229 (265)
.++|++|++.+|+ .|++||+.++... ..+++.++++.+++.+.++ ....+||||||||++|||||+
T Consensus 76 ~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~l~~~gl~~~~~-----------~~~~~LSgGq~qRvalaraL~ 144 (352)
T PRK11144 76 RRIGYVFQDARLFPHYKVRGNLRYGMAKSMVAQFDKIVALLGIEPLLD-----------RYPGSLSGGEKQRVAIGRALL 144 (352)
T ss_pred CCEEEEcCCcccCCCCcHHHHHHhhhhhhhHHHHHHHHHHcCCchhhh-----------CCcccCCHHHHHHHHHHHHHH
Confidence 2899999999996 5999999987432 2344556666666654433 345689999999999999999
Q ss_pred cCCCEEEEeCCCCCcCHHHHHHHHHHHHHHHhh
Q psy1503 230 KNADIYLLDDPLSAVDMHVGKHLFEDCISGCLT 262 (265)
Q Consensus 230 ~~~~illLDEp~s~LD~~~~~~i~~~~i~~~l~ 262 (265)
.+|+++||||||++||+.+...+++ .+..+.+
T Consensus 145 ~~p~llLLDEPts~LD~~~~~~l~~-~L~~l~~ 176 (352)
T PRK11144 145 TAPELLLMDEPLASLDLPRKRELLP-YLERLAR 176 (352)
T ss_pred cCCCEEEEcCCcccCCHHHHHHHHH-HHHHHHH
Confidence 9999999999999999999988865 4444443
No 234
>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.6e-36 Score=266.48 Aligned_cols=161 Identities=22% Similarity=0.342 Sum_probs=128.7
Q ss_pred EEEEeEEEEeCCCCCCcceeeceEEEcCCcEEEEEcCCCChHHHHHHHHhcCcC-----CCccEEEEcCe----------
Q psy1503 89 VSLDNVTAQWSLQNADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELR-----ISSGKVSLGGT---------- 153 (265)
Q Consensus 89 i~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~-----~~~G~i~~~g~---------- 153 (265)
-+++|++++|++ .++++|+||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|.
T Consensus 6 ~~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 82 (251)
T PRK14244 6 ASVKNLNLWYGS---KQILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSVDTNVV 82 (251)
T ss_pred EEeeeEEEEECC---eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECCEehHhcccchH
Confidence 468999999953 468999999999999999999999999999999999986 47999999772
Q ss_pred -----EEEEecCCCCccccHHHHHhcCCcc-----c----HHHHHHHHHHhcchhHHhcCCCCCccccCCCCCCCCHHHH
Q psy1503 154 -----VSYASQEPWIFAATIRQNILFGLPY-----L----RRRYADVIRVCALQDDFDSLPNGDFTVVGERGASLSGGQK 219 (265)
Q Consensus 154 -----i~~v~Q~~~l~~~ti~eni~~~~~~-----~----~~~~~~~~~~~~l~~~i~~l~~g~~t~vg~~g~~LSgGqr 219 (265)
++|++|++.+|+.|+.||+.++... . .++..++++..++.+.+ .+.+...+.+||||||
T Consensus 83 ~~~~~i~~v~q~~~~~~~tv~~ni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~~~~~~~LS~Gq~ 155 (251)
T PRK14244 83 LLRAKVGMVFQKPNPFPKSIYDNVAYGPKLHGLAKNKKKLDEIVEKSLTSVGLWEEL-------GDRLKDSAFELSGGQQ 155 (251)
T ss_pred HHhhhEEEEecCcccccCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCCchh-------hhHhhcChhhCCHHHH
Confidence 8999999999988999999875210 1 11223334444443221 1233456789999999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHH
Q psy1503 220 ARINLARAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGC 260 (265)
Q Consensus 220 qRialARal~~~~~illLDEp~s~LD~~~~~~i~~~~i~~~ 260 (265)
||++|||||+++|+++||||||++||+.+...+.+ .+..+
T Consensus 156 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~-~l~~~ 195 (251)
T PRK14244 156 QRLCIARAIAVKPTMLLMDEPCSALDPVATNVIEN-LIQEL 195 (251)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHH-HHHHH
Confidence 99999999999999999999999999999888754 55444
No 235
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=4.7e-36 Score=255.55 Aligned_cols=151 Identities=26% Similarity=0.343 Sum_probs=125.2
Q ss_pred EEEEeEEEEeCCCCCCcceeeceEEEcCCcEEEEEcCCCChHHHHHHHHhcCcCCCccEEEEcCe---------EEEEec
Q psy1503 89 VSLDNVTAQWSLQNADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSLGGT---------VSYASQ 159 (265)
Q Consensus 89 i~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g~---------i~~v~Q 159 (265)
++++|++++|+. +.++ ++||+|++|++++|+|+||||||||+++|+|+++|++|+|.++|. ++|++|
T Consensus 2 l~~~~l~~~~~~---~~l~-~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~ 77 (195)
T PRK13541 2 LSLHQLQFNIEQ---KNLF-DLSITFLPSAITYIKGANGCGKSSLLRMIAGIMQPSSGNIYYKNCNINNIAKPYCTYIGH 77 (195)
T ss_pred eEEEEeeEEECC---cEEE-EEEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCcccChhhhhhEEeccC
Confidence 789999999953 3344 599999999999999999999999999999999999999999983 789999
Q ss_pred CCCC-ccccHHHHHhcCCcc--cHHHHHHHHHHhcchhHHhcCCCCCccccCCCCCCCCHHHHHHHHHHHHHccCCCEEE
Q psy1503 160 EPWI-FAATIRQNILFGLPY--LRRRYADVIRVCALQDDFDSLPNGDFTVVGERGASLSGGQKARINLARAVYKNADIYL 236 (265)
Q Consensus 160 ~~~l-~~~ti~eni~~~~~~--~~~~~~~~~~~~~l~~~i~~l~~g~~t~vg~~g~~LSgGqrqRialARal~~~~~ill 236 (265)
++.+ ++.|++||+.+.... ..+++.++++.+++.+.. ...+.+||||||||++||||++++|+++|
T Consensus 78 ~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LS~G~~~rl~la~al~~~p~~ll 146 (195)
T PRK13541 78 NLGLKLEMTVFENLKFWSEIYNSAETLYAAIHYFKLHDLL-----------DEKCYSLSSGMQKIVAIARLIACQSDLWL 146 (195)
T ss_pred CcCCCccCCHHHHHHHHHHhcccHHHHHHHHHHcCCHhhh-----------ccChhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 8765 467999999875322 223444555555554332 34567899999999999999999999999
Q ss_pred EeCCCCCcCHHHHHHHHH
Q psy1503 237 LDDPLSAVDMHVGKHLFE 254 (265)
Q Consensus 237 LDEp~s~LD~~~~~~i~~ 254 (265)
|||||++||+.+.+.+.+
T Consensus 147 lDEP~~~LD~~~~~~l~~ 164 (195)
T PRK13541 147 LDEVETNLSKENRDLLNN 164 (195)
T ss_pred EeCCcccCCHHHHHHHHH
Confidence 999999999999887755
No 236
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.3e-36 Score=254.30 Aligned_cols=158 Identities=24% Similarity=0.399 Sum_probs=131.8
Q ss_pred cEEEEeEEEEeCCCCCCcceeeceEEEcCCcEEEEEcCCCChHHHHHHHHhcCcCCCccEEEEcCe--------EEEEec
Q psy1503 88 HVSLDNVTAQWSLQNADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSLGGT--------VSYASQ 159 (265)
Q Consensus 88 ~i~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g~--------i~~v~Q 159 (265)
.+.+++++.+|+.. ...+|+|+|++|.+|++++++||||||||||+++++|+++|..|+|.++|+ -|.|+|
T Consensus 3 ~l~~~~~sl~y~g~-~~~~le~vsL~ia~ge~vv~lGpSGcGKTTLLnl~AGf~~P~~G~i~l~~r~i~gPgaergvVFQ 81 (259)
T COG4525 3 MLNVSHLSLSYEGK-PRSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPSRGSIQLNGRRIEGPGAERGVVFQ 81 (259)
T ss_pred eeehhheEEecCCc-chhhhhccceeecCCCEEEEEcCCCccHHHHHHHHhcCcCcccceEEECCEeccCCCccceeEec
Confidence 46788999999764 356999999999999999999999999999999999999999999999986 799999
Q ss_pred CCCCcc-ccHHHHHhcCCcc---cH----HHHHHHHHHhcchhHHhcCCCCCccccCCCCCCCCHHHHHHHHHHHHHccC
Q psy1503 160 EPWIFA-ATIRQNILFGLPY---LR----RRYADVIRVCALQDDFDSLPNGDFTVVGERGASLSGGQKARINLARAVYKN 231 (265)
Q Consensus 160 ~~~l~~-~ti~eni~~~~~~---~~----~~~~~~~~~~~l~~~i~~l~~g~~t~vg~~g~~LSgGqrqRialARal~~~ 231 (265)
++-|++ .++.||+.||... .+ +...+.+..++|.+.- .....+||||||||+.|||||..+
T Consensus 82 ~~~LlPWl~~~dNvafgL~l~Gi~k~~R~~~a~q~l~~VgL~~~~-----------~~~i~qLSGGmrQRvGiARALa~e 150 (259)
T COG4525 82 NEALLPWLNVIDNVAFGLQLRGIEKAQRREIAHQMLALVGLEGAE-----------HKYIWQLSGGMRQRVGIARALAVE 150 (259)
T ss_pred cCccchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhCccccc-----------ccceEeecchHHHHHHHHHHhhcC
Confidence 999997 6999999998642 11 2223344445554321 234579999999999999999999
Q ss_pred CCEEEEeCCCCCcCHHHHHHHHHHHH
Q psy1503 232 ADIYLLDDPLSAVDMHVGKHLFEDCI 257 (265)
Q Consensus 232 ~~illLDEp~s~LD~~~~~~i~~~~i 257 (265)
|++++||||+++||+-+++++-+-.+
T Consensus 151 P~~LlLDEPfgAlDa~tRe~mQelLl 176 (259)
T COG4525 151 PQLLLLDEPFGALDALTREQMQELLL 176 (259)
T ss_pred cceEeecCchhhHHHHHHHHHHHHHH
Confidence 99999999999999999999844333
No 237
>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.4e-36 Score=264.74 Aligned_cols=162 Identities=23% Similarity=0.415 Sum_probs=132.0
Q ss_pred cEEEEeEEEEeCCCCCCcceeeceEEEcCCcEEEEEcCCCChHHHHHHHHhcCcC-----CCccEEEEcCe---------
Q psy1503 88 HVSLDNVTAQWSLQNADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELR-----ISSGKVSLGGT--------- 153 (265)
Q Consensus 88 ~i~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~-----~~~G~i~~~g~--------- 153 (265)
.++++|+++.|+. +++++|+||+|++|++++|+||||||||||+++|+|+.+ |++|+|.++|.
T Consensus 3 ~l~~~~v~~~~~~---~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~ 79 (250)
T PRK14266 3 RIEVENLNTYFDD---AHILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIYDPAVDV 79 (250)
T ss_pred EEEEEeEEEEeCC---eEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhhccCCCCCCccEEEECCEEcccccccH
Confidence 4789999999963 469999999999999999999999999999999999864 48999998872
Q ss_pred ------EEEEecCCCCccccHHHHHhcCCc----cc----HHHHHHHHHHhcchhHHhcCCCCCccccCCCCCCCCHHHH
Q psy1503 154 ------VSYASQEPWIFAATIRQNILFGLP----YL----RRRYADVIRVCALQDDFDSLPNGDFTVVGERGASLSGGQK 219 (265)
Q Consensus 154 ------i~~v~Q~~~l~~~ti~eni~~~~~----~~----~~~~~~~~~~~~l~~~i~~l~~g~~t~vg~~g~~LSgGqr 219 (265)
++|+||++++|+.|+.||+.++.. .+ .+++.+.++.+++.+.+.. .....+.+||||||
T Consensus 80 ~~~~~~i~~~~q~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~-------~~~~~~~~LS~Gq~ 152 (250)
T PRK14266 80 VELRKKVGMVFQKPNPFPKSIFDNVAYGLRIHGEDDEDFIEERVEESLKAAALWDEVKD-------KLDKSALGLSGGQQ 152 (250)
T ss_pred HHHhhheEEEecCCccCcchHHHHHHhHHhhcCCCCHHHHHHHHHHHHHHcCCchhHHH-------HHhCCcccCCHHHH
Confidence 899999999999999999986521 11 1233445555665443322 23456789999999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHH
Q psy1503 220 ARINLARAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGC 260 (265)
Q Consensus 220 qRialARal~~~~~illLDEp~s~LD~~~~~~i~~~~i~~~ 260 (265)
||++|||||+++|+++||||||++||+.+...+.+ .+..+
T Consensus 153 qrv~laral~~~p~llllDEP~~gLD~~~~~~l~~-~l~~~ 192 (250)
T PRK14266 153 QRLCIARTIAVSPEVILMDEPCSALDPISTTKIED-LIHKL 192 (250)
T ss_pred HHHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHH-HHHHH
Confidence 99999999999999999999999999999888755 44444
No 238
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=100.00 E-value=5.6e-36 Score=266.70 Aligned_cols=163 Identities=26% Similarity=0.366 Sum_probs=128.2
Q ss_pred cEEEEeEEEEeCCC------CCCcceeeceEEEcCCcEEEEEcCCCChHHHHHHHHhcCcCCCccEEEEcCe--------
Q psy1503 88 HVSLDNVTAQWSLQ------NADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSLGGT-------- 153 (265)
Q Consensus 88 ~i~~~~~~~~~~~~------~~~~~l~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g~-------- 153 (265)
+++++|++++|+.. ...++++|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.
T Consensus 2 ~l~~~~l~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~ 81 (265)
T TIGR02769 2 LLEVRDVTHTYRTGGLFGAKQRAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQGTVSFRGQDLYQLDRK 81 (265)
T ss_pred eEEEEeEEEEeccCccccccCceEEeeCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEccccCHH
Confidence 48899999999631 1356999999999999999999999999999999999999999999999872
Q ss_pred --------EEEEecCCC--Ccc-ccHHHHHhcCCc----cc----HHHHHHHHHHhcchhHHhcCCCCCccccCCCCCCC
Q psy1503 154 --------VSYASQEPW--IFA-ATIRQNILFGLP----YL----RRRYADVIRVCALQDDFDSLPNGDFTVVGERGASL 214 (265)
Q Consensus 154 --------i~~v~Q~~~--l~~-~ti~eni~~~~~----~~----~~~~~~~~~~~~l~~~i~~l~~g~~t~vg~~g~~L 214 (265)
++|++|++. +++ .|++||+.+... .. .++..++++..++.. ......+.+|
T Consensus 82 ~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~----------~~~~~~~~~L 151 (265)
T TIGR02769 82 QRRAFRRDVQLVFQDSPSAVNPRMTVRQIIGEPLRHLTSLDESEQKARIAELLDMVGLRS----------EDADKLPRQL 151 (265)
T ss_pred HHHHHhhceEEEecChhhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCh----------hhhhCChhhC
Confidence 899999973 443 699999865321 11 122233333333321 1234566799
Q ss_pred CHHHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHHh
Q psy1503 215 SGGQKARINLARAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGCL 261 (265)
Q Consensus 215 SgGqrqRialARal~~~~~illLDEp~s~LD~~~~~~i~~~~i~~~l 261 (265)
|||||||++|||||+++|+++||||||++||+.+...+.+ .+..+.
T Consensus 152 SgGe~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~-~l~~~~ 197 (265)
T TIGR02769 152 SGGQLQRINIARALAVKPKLIVLDEAVSNLDMVLQAVILE-LLRKLQ 197 (265)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHH-HHHHHH
Confidence 9999999999999999999999999999999999887755 444444
No 239
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=4.6e-37 Score=251.53 Aligned_cols=150 Identities=30% Similarity=0.461 Sum_probs=127.1
Q ss_pred CCcceeeceEEEcCCcEEEEEcCCCChHHHHHHHHhcCcCCCccEEEEcCe-------------EEEEecCCCCccccHH
Q psy1503 103 ADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSLGGT-------------VSYASQEPWIFAATIR 169 (265)
Q Consensus 103 ~~~~l~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g~-------------i~~v~Q~~~l~~~ti~ 169 (265)
+.++|+++||.+.+||+++|+||||||||||+++++.+.+|++|++.+.|. |+||.|.|-||.+||.
T Consensus 15 ~a~il~~isl~v~~Ge~iaitGPSG~GKStllk~va~Lisp~~G~l~f~Ge~vs~~~pea~Rq~VsY~~Q~paLfg~tVe 94 (223)
T COG4619 15 DAKILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDVSTLKPEAYRQQVSYCAQTPALFGDTVE 94 (223)
T ss_pred CCeeecceeeeecCCceEEEeCCCCccHHHHHHHHHhccCCCCceEEEcCccccccChHHHHHHHHHHHcCccccccchh
Confidence 467999999999999999999999999999999999999999999999984 9999999999999999
Q ss_pred HHHhcCCc-----ccHHHHHHHHHHhcchhHHhcCCCCCccccCCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCc
Q psy1503 170 QNILFGLP-----YLRRRYADVIRVCALQDDFDSLPNGDFTVVGERGASLSGGQKARINLARAVYKNADIYLLDDPLSAV 244 (265)
Q Consensus 170 eni~~~~~-----~~~~~~~~~~~~~~l~~~i~~l~~g~~t~vg~~g~~LSgGqrqRialARal~~~~~illLDEp~s~L 244 (265)
||+.|... .+.....+.++..++. ++.+..+..+||||+|||+||+|-|..-|+|++||||||+|
T Consensus 95 DNlifP~~~r~rr~dr~aa~~llar~~l~----------~~~L~k~it~lSGGE~QriAliR~Lq~~P~ILLLDE~TsAL 164 (223)
T COG4619 95 DNLIFPWQIRNRRPDRAAALDLLARFALP----------DSILTKNITELSGGEKQRIALIRNLQFMPKILLLDEITSAL 164 (223)
T ss_pred hccccchHHhccCCChHHHHHHHHHcCCc----------hhhhcchhhhccchHHHHHHHHHHhhcCCceEEecCchhhc
Confidence 99998632 2333333333333332 24455677899999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhhc
Q psy1503 245 DMHVGKHLFEDCISGCLTS 263 (265)
Q Consensus 245 D~~~~~~i~~~~i~~~l~~ 263 (265)
|+++.+.| ++.|..+.++
T Consensus 165 D~~nkr~i-e~mi~~~v~~ 182 (223)
T COG4619 165 DESNKRNI-EEMIHRYVRE 182 (223)
T ss_pred ChhhHHHH-HHHHHHHhhh
Confidence 99999988 6666666654
No 240
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=100.00 E-value=3e-36 Score=280.67 Aligned_cols=143 Identities=29% Similarity=0.470 Sum_probs=120.4
Q ss_pred CcceeeceEEEcCCcEEEEEcCCCChHHHHHHHHhcCcCCCccEEEEcC---------------------eEEEEecCCC
Q psy1503 104 DLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSLGG---------------------TVSYASQEPW 162 (265)
Q Consensus 104 ~~~l~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g---------------------~i~~v~Q~~~ 162 (265)
..+++|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++| .++|++|++.
T Consensus 37 ~~~l~~vsf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl~~p~~G~I~idG~~~~~~i~~~~~~~l~~~r~~~i~~vfQ~~~ 116 (382)
T TIGR03415 37 VVGVANASLDIEEGEICVLMGLSGSGKSSLLRAVNGLNPVSRGSVLVKDGDGSIDVANCDAATLRRLRTHRVSMVFQKFA 116 (382)
T ss_pred EEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEecccccccCCHHHHHHHhcCCEEEEECCCc
Confidence 4579999999999999999999999999999999999999999999986 2899999999
Q ss_pred Ccc-ccHHHHHhcCCcc---c----HHHHHHHHHHhcchhHHhcCCCCCccccCCCCCCCCHHHHHHHHHHHHHccCCCE
Q psy1503 163 IFA-ATIRQNILFGLPY---L----RRRYADVIRVCALQDDFDSLPNGDFTVVGERGASLSGGQKARINLARAVYKNADI 234 (265)
Q Consensus 163 l~~-~ti~eni~~~~~~---~----~~~~~~~~~~~~l~~~i~~l~~g~~t~vg~~g~~LSgGqrqRialARal~~~~~i 234 (265)
+|+ .|++||+.++... . .++..++++..++.+..+ ....+||||||||++|||||+.+|+|
T Consensus 117 l~p~~Tv~eNi~~~~~~~g~~~~~~~~~a~e~le~vgL~~~~~-----------~~~~~LSgGq~QRV~LARALa~~P~I 185 (382)
T TIGR03415 117 LMPWLTVEENVAFGLEMQGMPEAERRKRVDEQLELVGLAQWAD-----------KKPGELSGGMQQRVGLARAFAMDADI 185 (382)
T ss_pred CCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhc-----------CChhhCCHHHHHHHHHHHHHhcCCCE
Confidence 997 6999999976321 1 123344555555544333 34468999999999999999999999
Q ss_pred EEEeCCCCCcCHHHHHHHHHHHH
Q psy1503 235 YLLDDPLSAVDMHVGKHLFEDCI 257 (265)
Q Consensus 235 llLDEp~s~LD~~~~~~i~~~~i 257 (265)
+|||||||+||+.+...+++...
T Consensus 186 LLlDEPts~LD~~~r~~l~~~L~ 208 (382)
T TIGR03415 186 LLMDEPFSALDPLIRTQLQDELL 208 (382)
T ss_pred EEEECCCccCCHHHHHHHHHHHH
Confidence 99999999999999999866443
No 241
>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.4e-36 Score=270.40 Aligned_cols=164 Identities=27% Similarity=0.385 Sum_probs=130.5
Q ss_pred CCcEEEEeEEEEeCCCCCCcceeeceEEEcCCcEEEEEcCCCChHHHHHHHHhcCcC-----CCccEEEEcC--------
Q psy1503 86 KGHVSLDNVTAQWSLQNADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELR-----ISSGKVSLGG-------- 152 (265)
Q Consensus 86 ~~~i~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~-----~~~G~i~~~g-------- 152 (265)
...++++|++++|+. .++|+|+||+|++|++++|+||||||||||+++|+|+.+ |++|+|.++|
T Consensus 37 ~~~l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~~G~I~~~g~~i~~~~~ 113 (286)
T PRK14275 37 KPHVVAKNFSIYYGE---FEAVKKVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIYGKFT 113 (286)
T ss_pred ceEEEEeeeEEEECC---EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCCceEEEECCEEhhhccc
Confidence 346899999999963 358999999999999999999999999999999999864 4999999976
Q ss_pred -------eEEEEecCCCCccccHHHHHhcCCc---c-cH----HHHHHHHHHhcchhHHhcCCCCCccccCCCCCCCCHH
Q psy1503 153 -------TVSYASQEPWIFAATIRQNILFGLP---Y-LR----RRYADVIRVCALQDDFDSLPNGDFTVVGERGASLSGG 217 (265)
Q Consensus 153 -------~i~~v~Q~~~l~~~ti~eni~~~~~---~-~~----~~~~~~~~~~~l~~~i~~l~~g~~t~vg~~g~~LSgG 217 (265)
.++|++|++.+|+.|+.||+.++.. . .. ++..++++..++...+. .........||||
T Consensus 114 ~~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~-------~~~~~~~~~LSgG 186 (286)
T PRK14275 114 DEVLLRKKIGMVFQKPNPFPKSIFDNIAYGPRLHGINDKKQLEEIVEKSLRKAALWDEVS-------DRLDKNALGLSGG 186 (286)
T ss_pred chHHhhhcEEEECCCCCCCccCHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHhCCccchh-------hHhhCChhhCCHH
Confidence 2899999999998899999987532 1 11 12223333333321111 1234567899999
Q ss_pred HHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHH
Q psy1503 218 QKARINLARAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGC 260 (265)
Q Consensus 218 qrqRialARal~~~~~illLDEp~s~LD~~~~~~i~~~~i~~~ 260 (265)
||||++|||||+.+|+++||||||++||+.+...+++ .+..+
T Consensus 187 q~qrv~LAraL~~~p~lllLDEPt~gLD~~~~~~l~~-~L~~~ 228 (286)
T PRK14275 187 QQQRLCVARTLAVEPEILLLDEPTSALDPKATAKIED-LIQEL 228 (286)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHH-HHHHH
Confidence 9999999999999999999999999999999988865 44444
No 242
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=100.00 E-value=6.1e-36 Score=266.80 Aligned_cols=163 Identities=22% Similarity=0.355 Sum_probs=128.5
Q ss_pred CcEEEEeEEEEeCCC------CCCcceeeceEEEcCCcEEEEEcCCCChHHHHHHHHhcCcCCCccEEEEcC--------
Q psy1503 87 GHVSLDNVTAQWSLQ------NADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSLGG-------- 152 (265)
Q Consensus 87 ~~i~~~~~~~~~~~~------~~~~~l~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g-------- 152 (265)
.+|+++|++++|+.. ...++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|
T Consensus 3 ~~l~~~~l~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~ 82 (267)
T PRK15112 3 TLLEVRNLSKTFRYRTGWFRRQTVEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGELLIDDHPLHFGDY 82 (267)
T ss_pred ceEEEeceEEEecCCCCcccccccceeeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCch
Confidence 368999999999631 124699999999999999999999999999999999999999999999987
Q ss_pred -----eEEEEecCCC--Ccc-ccHHHHHhcCCc----cc----HHHHHHHHHHhcchhHHhcCCCCCccccCCCCCCCCH
Q psy1503 153 -----TVSYASQEPW--IFA-ATIRQNILFGLP----YL----RRRYADVIRVCALQDDFDSLPNGDFTVVGERGASLSG 216 (265)
Q Consensus 153 -----~i~~v~Q~~~--l~~-~ti~eni~~~~~----~~----~~~~~~~~~~~~l~~~i~~l~~g~~t~vg~~g~~LSg 216 (265)
.++|++|++. +++ .|+.+|+.+... .. .++..++++.+++.... ......+|||
T Consensus 83 ~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~----------~~~~~~~LS~ 152 (267)
T PRK15112 83 SYRSQRIRMIFQDPSTSLNPRQRISQILDFPLRLNTDLEPEQREKQIIETLRQVGLLPDH----------ASYYPHMLAP 152 (267)
T ss_pred hhHhccEEEEecCchhhcCcchhHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHH----------HhcCchhcCH
Confidence 2899999985 444 489999865311 11 12334455555553211 1223468999
Q ss_pred HHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHH
Q psy1503 217 GQKARINLARAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGC 260 (265)
Q Consensus 217 GqrqRialARal~~~~~illLDEp~s~LD~~~~~~i~~~~i~~~ 260 (265)
|||||++|||||+.+|+|+||||||++||+.+...+++ .+..+
T Consensus 153 G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~-~l~~~ 195 (267)
T PRK15112 153 GQKQRLGLARALILRPKVIIADEALASLDMSMRSQLIN-LMLEL 195 (267)
T ss_pred HHHHHHHHHHHHHhCCCEEEEcCCcccCCHHHHHHHHH-HHHHH
Confidence 99999999999999999999999999999999888755 44444
No 243
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=100.00 E-value=2.5e-36 Score=273.89 Aligned_cols=145 Identities=20% Similarity=0.355 Sum_probs=120.4
Q ss_pred CcceeeceEEEcCCcEEEEEcCCCChHHHHHHHHhcCcCCCccEEEEcCe------------EEEEecCCCCccc-cHHH
Q psy1503 104 DLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSLGGT------------VSYASQEPWIFAA-TIRQ 170 (265)
Q Consensus 104 ~~~l~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g~------------i~~v~Q~~~l~~~-ti~e 170 (265)
.++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|. ++|++|++.+++. |++|
T Consensus 6 ~~~l~~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e 85 (302)
T TIGR01188 6 FKAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVREPRKVRRSIGIVPQYASVDEDLTGRE 85 (302)
T ss_pred eeEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCHHHHHhhcEEecCCCCCCCCCcHHH
Confidence 46899999999999999999999999999999999999999999999882 8999999999875 9999
Q ss_pred HHhcCCc---cc----HHHHHHHHHHhcchhHHhcCCCCCccccCCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCC
Q psy1503 171 NILFGLP---YL----RRRYADVIRVCALQDDFDSLPNGDFTVVGERGASLSGGQKARINLARAVYKNADIYLLDDPLSA 243 (265)
Q Consensus 171 ni~~~~~---~~----~~~~~~~~~~~~l~~~i~~l~~g~~t~vg~~g~~LSgGqrqRialARal~~~~~illLDEp~s~ 243 (265)
|+.+... .. .++..++++.+++.+.. .....+||||||||++|||||+++|+++||||||++
T Consensus 86 ~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~g 154 (302)
T TIGR01188 86 NLEMMGRLYGLPKDEAEERAEELLELFELGEAA-----------DRPVGTYSGGMRRRLDIAASLIHQPDVLFLDEPTTG 154 (302)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHh-----------CCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcC
Confidence 9986421 11 12344455555554322 344578999999999999999999999999999999
Q ss_pred cCHHHHHHHHHHHHHHH
Q psy1503 244 VDMHVGKHLFEDCISGC 260 (265)
Q Consensus 244 LD~~~~~~i~~~~i~~~ 260 (265)
||+.+.+.+++ .+..+
T Consensus 155 LD~~~~~~l~~-~l~~~ 170 (302)
T TIGR01188 155 LDPRTRRAIWD-YIRAL 170 (302)
T ss_pred CCHHHHHHHHH-HHHHH
Confidence 99999988866 44444
No 244
>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.3e-36 Score=269.15 Aligned_cols=163 Identities=29% Similarity=0.407 Sum_probs=131.4
Q ss_pred CcEEEEeEEEEeCCCCCCcceeeceEEEcCCcEEEEEcCCCChHHHHHHHHhcCcCC-----CccEEEEcCe--------
Q psy1503 87 GHVSLDNVTAQWSLQNADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRI-----SSGKVSLGGT-------- 153 (265)
Q Consensus 87 ~~i~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~-----~~G~i~~~g~-------- 153 (265)
..++++|++++|+. .++++|+||+|++|++++|+||||||||||+++|+|+++| ++|+|.++|.
T Consensus 20 ~~l~i~nl~~~~~~---~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~ 96 (276)
T PRK14271 20 PAMAAVNLTLGFAG---KTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFNYRDV 96 (276)
T ss_pred cEEEEeeEEEEECC---EEEeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcCCCCCCceEEEECCEEccccchh
Confidence 46899999999963 4689999999999999999999999999999999999986 6999999872
Q ss_pred ------EEEEecCCCCccccHHHHHhcCCc----ccHHHH----HHHHHHhcchhHHhcCCCCCccccCCCCCCCCHHHH
Q psy1503 154 ------VSYASQEPWIFAATIRQNILFGLP----YLRRRY----ADVIRVCALQDDFDSLPNGDFTVVGERGASLSGGQK 219 (265)
Q Consensus 154 ------i~~v~Q~~~l~~~ti~eni~~~~~----~~~~~~----~~~~~~~~l~~~i~~l~~g~~t~vg~~g~~LSgGqr 219 (265)
++|++|++.+|+.|+++|+.++.. .....+ .+.++.+++... ..+.+...+.+||||||
T Consensus 97 ~~~~~~i~~v~q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-------~~~~l~~~~~~LSgGq~ 169 (276)
T PRK14271 97 LEFRRRVGMLFQRPNPFPMSIMDNVLAGVRAHKLVPRKEFRGVAQARLTEVGLWDA-------VKDRLSDSPFRLSGGQQ 169 (276)
T ss_pred HHHhhheEEeccCCccCCccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCCch-------hhhHhhCCcccCCHHHH
Confidence 899999999999999999987531 112121 222333333221 11234566789999999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHH
Q psy1503 220 ARINLARAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGC 260 (265)
Q Consensus 220 qRialARal~~~~~illLDEp~s~LD~~~~~~i~~~~i~~~ 260 (265)
||++|||||+.+|+++||||||++||+.+.+.+++ .+..+
T Consensus 170 qrl~LAral~~~p~lllLDEPt~~LD~~~~~~l~~-~L~~~ 209 (276)
T PRK14271 170 QLLCLARTLAVNPEVLLLDEPTSALDPTTTEKIEE-FIRSL 209 (276)
T ss_pred HHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHH-HHHHH
Confidence 99999999999999999999999999999988865 44443
No 245
>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=7.7e-36 Score=265.45 Aligned_cols=159 Identities=26% Similarity=0.390 Sum_probs=132.9
Q ss_pred cEEEEeEEEEeCCCCCCcceeeceEEEcCCcEEEEEcCCCChHHHHHHHHhcCcCC-----CccEEEEcCe---------
Q psy1503 88 HVSLDNVTAQWSLQNADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRI-----SSGKVSLGGT--------- 153 (265)
Q Consensus 88 ~i~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~-----~~G~i~~~g~--------- 153 (265)
.+.+++.+++|+. .++++|+||++++|++++|+|+||||||||+++|+|+++| ++|+|.++|.
T Consensus 8 ~~~~~~~~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~ 84 (261)
T PRK14263 8 VMDCKLDKIFYGN---FMAVRDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDVYGKGVDP 84 (261)
T ss_pred eEEEEeEEEEeCC---EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcccccccCCCCceEEEECCEeccccccch
Confidence 5889999999953 4689999999999999999999999999999999999986 7999999872
Q ss_pred ------EEEEecCCCCccccHHHHHhcCCcc------cHHHHHHHHHHhcchhHHhcCCCCCccccCCCCCCCCHHHHHH
Q psy1503 154 ------VSYASQEPWIFAATIRQNILFGLPY------LRRRYADVIRVCALQDDFDSLPNGDFTVVGERGASLSGGQKAR 221 (265)
Q Consensus 154 ------i~~v~Q~~~l~~~ti~eni~~~~~~------~~~~~~~~~~~~~l~~~i~~l~~g~~t~vg~~g~~LSgGqrqR 221 (265)
++|++|++++|+.|+.||+.++... ..+++.++++..++...+.. ..++...+|||||+||
T Consensus 85 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~-------~~~~~~~~LS~G~~qr 157 (261)
T PRK14263 85 VVVRRYIGMVFQQPNPFSMSIFDNVAFGLRLNRYKGDLGDRVKHALQGAALWDEVKD-------KLKVSGLSLSGGQQQR 157 (261)
T ss_pred HhhhhceEEEecCCccccccHHHHHHHHHhhcCchHHHHHHHHHHHHHcCCchhhhh-------hhhCCcccCCHHHHHH
Confidence 8999999999989999999876321 12344555666665443321 2345677999999999
Q ss_pred HHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHH
Q psy1503 222 INLARAVYKNADIYLLDDPLSAVDMHVGKHLFEDC 256 (265)
Q Consensus 222 ialARal~~~~~illLDEp~s~LD~~~~~~i~~~~ 256 (265)
++|||||+++|+++||||||++||+.+...+++..
T Consensus 158 v~laral~~~p~llllDEPtsgLD~~~~~~l~~~l 192 (261)
T PRK14263 158 LCIARAIATEPEVLLLDEPCSALDPIATRRVEELM 192 (261)
T ss_pred HHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHH
Confidence 99999999999999999999999999999886643
No 246
>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.9e-36 Score=264.25 Aligned_cols=163 Identities=26% Similarity=0.404 Sum_probs=129.4
Q ss_pred CcEEEEeEEEEeCCCCCCcceeeceEEEcCCcEEEEEcCCCChHHHHHHHHhcCcC--C---CccEEEEcCe--------
Q psy1503 87 GHVSLDNVTAQWSLQNADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELR--I---SSGKVSLGGT-------- 153 (265)
Q Consensus 87 ~~i~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~--~---~~G~i~~~g~-------- 153 (265)
.+++++|++++|+. +++|+++||+|++|++++|+||||||||||+++|+|+++ | ++|+|.++|.
T Consensus 4 ~~l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~ 80 (252)
T PRK14255 4 KIITSSDVHLFYGK---FEALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYAPNED 80 (252)
T ss_pred ceEEEEeEEEEECC---eeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcccEEEEcCEEccccccc
Confidence 46899999999963 468999999999999999999999999999999999875 4 5899998772
Q ss_pred -------EEEEecCCCCccccHHHHHhcCCcc----cH----HHHHHHHHHhcchhHHhcCCCCCccccCCCCCCCCHHH
Q psy1503 154 -------VSYASQEPWIFAATIRQNILFGLPY----LR----RRYADVIRVCALQDDFDSLPNGDFTVVGERGASLSGGQ 218 (265)
Q Consensus 154 -------i~~v~Q~~~l~~~ti~eni~~~~~~----~~----~~~~~~~~~~~l~~~i~~l~~g~~t~vg~~g~~LSgGq 218 (265)
++|++|++.+|+.|+.+|+.++... .. ++..+.++.+++...+ .........+|||||
T Consensus 81 ~~~~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i-------~~~~~~~~~~LS~Gq 153 (252)
T PRK14255 81 VVQLRKQVGMVFQQPNPFPFSIYENVIYGLRLAGVKDKAVLDEAVETSLKQAAIWDEV-------KDHLHESALSLSGGQ 153 (252)
T ss_pred HHHhcCeEEEEECCCccCCCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCccch-------hhHHhcCcccCCHHH
Confidence 8999999999989999999864211 11 1222233333332211 122345678999999
Q ss_pred HHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHH
Q psy1503 219 KARINLARAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGC 260 (265)
Q Consensus 219 rqRialARal~~~~~illLDEp~s~LD~~~~~~i~~~~i~~~ 260 (265)
|||++|||||+.+|+++||||||++||+.+...+.+ .+..+
T Consensus 154 ~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~-~l~~~ 194 (252)
T PRK14255 154 QQRVCIARVLAVKPDVILLDEPTSALDPISSTQIEN-MLLEL 194 (252)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHH-HHHHH
Confidence 999999999999999999999999999999988755 44443
No 247
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=4.5e-36 Score=252.30 Aligned_cols=130 Identities=32% Similarity=0.526 Sum_probs=117.0
Q ss_pred EEEEeEEEEeCCCCCCcceeeceEEEcCCcEEEEEcCCCChHHHHHHHHhcCcCCCccEEEEcC---------------e
Q psy1503 89 VSLDNVTAQWSLQNADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSLGG---------------T 153 (265)
Q Consensus 89 i~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g---------------~ 153 (265)
++++|++++|+. +++++++||++++|++++|+||||||||||+++|+|+++|++|+|.++| .
T Consensus 1 i~~~~l~~~~~~---~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 77 (178)
T cd03229 1 LELKNVSKRYGQ---KTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSILIDGEDLTDLEDELPPLRRR 77 (178)
T ss_pred CEEEEEEEEECC---eEEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccchhHHHHhhc
Confidence 468999999963 4689999999999999999999999999999999999999999999877 2
Q ss_pred EEEEecCCCCcc-ccHHHHHhcCCcccHHHHHHHHHHhcchhHHhcCCCCCccccCCCCCCCCHHHHHHHHHHHHHccCC
Q psy1503 154 VSYASQEPWIFA-ATIRQNILFGLPYLRRRYADVIRVCALQDDFDSLPNGDFTVVGERGASLSGGQKARINLARAVYKNA 232 (265)
Q Consensus 154 i~~v~Q~~~l~~-~ti~eni~~~~~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~vg~~g~~LSgGqrqRialARal~~~~ 232 (265)
++|++|++.+++ .|++||+.+. ||||||||++|||||+++|
T Consensus 78 i~~~~q~~~~~~~~t~~~~l~~~--------------------------------------lS~G~~qr~~la~al~~~p 119 (178)
T cd03229 78 IGMVFQDFALFPHLTVLENIALG--------------------------------------LSGGQQQRVALARALAMDP 119 (178)
T ss_pred EEEEecCCccCCCCCHHHheeec--------------------------------------CCHHHHHHHHHHHHHHCCC
Confidence 789999999886 5999998653 9999999999999999999
Q ss_pred CEEEEeCCCCCcCHHHHHHHHHHHHHHH
Q psy1503 233 DIYLLDDPLSAVDMHVGKHLFEDCISGC 260 (265)
Q Consensus 233 ~illLDEp~s~LD~~~~~~i~~~~i~~~ 260 (265)
+++||||||++||+.+...+++ .+..+
T Consensus 120 ~llilDEP~~~LD~~~~~~l~~-~l~~~ 146 (178)
T cd03229 120 DVLLLDEPTSALDPITRREVRA-LLKSL 146 (178)
T ss_pred CEEEEeCCcccCCHHHHHHHHH-HHHHH
Confidence 9999999999999999988865 44443
No 248
>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=7.3e-36 Score=265.85 Aligned_cols=164 Identities=27% Similarity=0.438 Sum_probs=132.9
Q ss_pred CCcEEEEeEEEEeCCCCCCcceeeceEEEcCCcEEEEEcCCCChHHHHHHHHhcCcCC-----CccEEEEcC--------
Q psy1503 86 KGHVSLDNVTAQWSLQNADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRI-----SSGKVSLGG-------- 152 (265)
Q Consensus 86 ~~~i~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~-----~~G~i~~~g-------- 152 (265)
.+.|+++|++++|+. +++|+|+||+|++|++++|+|+||||||||+++|+|+.+| ++|+|.++|
T Consensus 14 ~~~l~~~~l~~~~~~---~~vl~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~sG~i~~~g~~~~~~~~ 90 (265)
T PRK14252 14 QQKSEVNKLNFYYGG---YQALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHPDNVNILSP 90 (265)
T ss_pred CceEEEEEEEEEECC---eeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCCCcccEEEEcCcccccccc
Confidence 357999999999963 3699999999999999999999999999999999999875 799998864
Q ss_pred ---------eEEEEecCCCCccccHHHHHhcCCcc--------cHHHHHHHHHHhcchhHHhcCCCCCccccCCCCCCCC
Q psy1503 153 ---------TVSYASQEPWIFAATIRQNILFGLPY--------LRRRYADVIRVCALQDDFDSLPNGDFTVVGERGASLS 215 (265)
Q Consensus 153 ---------~i~~v~Q~~~l~~~ti~eni~~~~~~--------~~~~~~~~~~~~~l~~~i~~l~~g~~t~vg~~g~~LS 215 (265)
.++|++|++.+|+.|++||+.++... .+++..++++.+++.+.+. +..+....+||
T Consensus 91 ~~~~~~~~~~i~~~~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~-------~~~~~~~~~LS 163 (265)
T PRK14252 91 EVDPIEVRMRISMVFQKPNPFPKSIFENVAYGLRIRGVKRRSILEERVENALRNAALWDEVK-------DRLGDLAFNLS 163 (265)
T ss_pred ccCHHHHhccEEEEccCCcCCcchHHHHHHhHHHHcCCChHHHHHHHHHHHHHHcCCchhhh-------HHHhCCcccCC
Confidence 28999999999988999999875311 1123344455554432222 23456678999
Q ss_pred HHHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHH
Q psy1503 216 GGQKARINLARAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGC 260 (265)
Q Consensus 216 gGqrqRialARal~~~~~illLDEp~s~LD~~~~~~i~~~~i~~~ 260 (265)
||||||++|||||+++|+++||||||++||+.+...+.+ .+..+
T Consensus 164 ~G~~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~-~l~~l 207 (265)
T PRK14252 164 GGQQQRLCIARALATDPEILLFDEPTSALDPIATASIEE-LISDL 207 (265)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHH-HHHHH
Confidence 999999999999999999999999999999999988755 44443
No 249
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=6e-36 Score=258.12 Aligned_cols=153 Identities=27% Similarity=0.462 Sum_probs=123.8
Q ss_pred EEEEeEEEEeCCCCCCcceeeceEEEcCCcEEEEEcCCCChHHHHHHHHhcCcCCCccEEEEcC----------------
Q psy1503 89 VSLDNVTAQWSLQNADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSLGG---------------- 152 (265)
Q Consensus 89 i~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g---------------- 152 (265)
+++ |++++|++ .. + |+||+|++ ++++|+||||||||||+++|+|+++|++|+|.++|
T Consensus 2 ~~~-~l~~~~~~---~~-~-~vsl~i~~-e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 74 (214)
T cd03297 2 LCV-DIEKRLPD---FT-L-KIDFDLNE-EVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLFDSRKKINLPPQQ 74 (214)
T ss_pred cee-eeeEecCC---ee-e-CceEEEcc-eeEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEecccccchhhhhhHh
Confidence 345 89999964 22 3 99999999 99999999999999999999999999999999876
Q ss_pred -eEEEEecCCCCcc-ccHHHHHhcCCcc-----cHHHHHHHHHHhcchhHHhcCCCCCccccCCCCCCCCHHHHHHHHHH
Q psy1503 153 -TVSYASQEPWIFA-ATIRQNILFGLPY-----LRRRYADVIRVCALQDDFDSLPNGDFTVVGERGASLSGGQKARINLA 225 (265)
Q Consensus 153 -~i~~v~Q~~~l~~-~ti~eni~~~~~~-----~~~~~~~~~~~~~l~~~i~~l~~g~~t~vg~~g~~LSgGqrqRialA 225 (265)
.++|++|++.+|+ .|++||+.++... ..+++.+.++..++.. .....+.+||||||||++||
T Consensus 75 ~~i~~~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LS~G~~qrv~la 143 (214)
T cd03297 75 RKIGLVFQQYALFPHLNVRENLAFGLKRKRNREDRISVDELLDLLGLDH-----------LLNRYPAQLSGGEKQRVALA 143 (214)
T ss_pred hcEEEEecCCccCCCCCHHHHHHHHHhhCCHHHHHHHHHHHHHHcCCHh-----------HhhcCcccCCHHHHHHHHHH
Confidence 2899999999986 5999999875321 1123334444444432 23455679999999999999
Q ss_pred HHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHH
Q psy1503 226 RAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGC 260 (265)
Q Consensus 226 Ral~~~~~illLDEp~s~LD~~~~~~i~~~~i~~~ 260 (265)
||++.+|+++||||||++||+.+.+.+++ .+..+
T Consensus 144 ~al~~~p~llllDEPt~~LD~~~~~~l~~-~l~~~ 177 (214)
T cd03297 144 RALAAQPELLLLDEPFSALDRALRLQLLP-ELKQI 177 (214)
T ss_pred HHHhcCCCEEEEcCCcccCCHHHHHHHHH-HHHHH
Confidence 99999999999999999999999988865 44444
No 250
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=8.6e-36 Score=264.31 Aligned_cols=162 Identities=25% Similarity=0.446 Sum_probs=129.4
Q ss_pred cEEEEeEEEEeCCCCCCcceeeceEEEcCCcEEEEEcCCCChHHHHHHHHhcCcCC-----CccEEEEcC----------
Q psy1503 88 HVSLDNVTAQWSLQNADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRI-----SSGKVSLGG---------- 152 (265)
Q Consensus 88 ~i~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~-----~~G~i~~~g---------- 152 (265)
.++++|++++|+. .++|+++||+|++|++++|+||||||||||+++|+|+++| ++|+|.++|
T Consensus 4 ~l~i~~v~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~~g~~~~~~~~~~ 80 (258)
T PRK14241 4 RIDVKDLNIYYGS---FHAVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYGPGVDP 80 (258)
T ss_pred cEEEeeEEEEECC---EeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcccCCCcceEEEECCEeccccccCh
Confidence 5899999999963 4689999999999999999999999999999999999974 799999976
Q ss_pred -----eEEEEecCCCCcc-ccHHHHHhcCCcc----cH----HHHHHHHHHhcchhHHhcCCCCCccccCCCCCCCCHHH
Q psy1503 153 -----TVSYASQEPWIFA-ATIRQNILFGLPY----LR----RRYADVIRVCALQDDFDSLPNGDFTVVGERGASLSGGQ 218 (265)
Q Consensus 153 -----~i~~v~Q~~~l~~-~ti~eni~~~~~~----~~----~~~~~~~~~~~l~~~i~~l~~g~~t~vg~~g~~LSgGq 218 (265)
.++|++|++.+|+ .|++||+.++... .. ++..++++..++...+. ........+|||||
T Consensus 81 ~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LS~G~ 153 (258)
T PRK14241 81 VAVRRTIGMVFQRPNPFPTMSIRDNVVAGLKLNGVRNKKDLDELVEKSLRGANLWNEVK-------DRLDKPGGGLSGGQ 153 (258)
T ss_pred HHHhcceEEEccccccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhh-------hHhhCCcccCCHHH
Confidence 2899999999887 5999999864211 11 12233344444422111 22345667999999
Q ss_pred HHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHH
Q psy1503 219 KARINLARAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGC 260 (265)
Q Consensus 219 rqRialARal~~~~~illLDEp~s~LD~~~~~~i~~~~i~~~ 260 (265)
|||++||||++.+|+++||||||++||+.+...+.+ .+..+
T Consensus 154 ~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~-~l~~~ 194 (258)
T PRK14241 154 QQRLCIARAIAVEPDVLLMDEPCSALDPISTLAIED-LINEL 194 (258)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHH-HHHHH
Confidence 999999999999999999999999999999988854 44444
No 251
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.4e-35 Score=271.81 Aligned_cols=163 Identities=20% Similarity=0.349 Sum_probs=130.1
Q ss_pred CcEEEEeEEEEeCCCC-------CCcceeeceEEEcCCcEEEEEcCCCChHHHHHHHHhcCcCCCccEEEEcCe------
Q psy1503 87 GHVSLDNVTAQWSLQN-------ADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSLGGT------ 153 (265)
Q Consensus 87 ~~i~~~~~~~~~~~~~-------~~~~l~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g~------ 153 (265)
..|+++|++++|+... ...+++||||+|++|++++|+|+||||||||+++|+|+++|++|+|.++|.
T Consensus 4 ~~l~v~nl~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~~p~~G~i~~~g~~l~~~~ 83 (327)
T PRK11308 4 PLLQAIDLKKHYPVKRGLFKPERLVKALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIETPTGGELYYQGQDLLKAD 83 (327)
T ss_pred ceEEEeeeEEEEcCCCCccccCCceeEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHHcCCCCCCcEEEECCEEcCcCC
Confidence 3689999999996321 246899999999999999999999999999999999999999999999872
Q ss_pred ----------EEEEecCCC--Ccc-ccHHHHHhcCC----ccc----HHHHHHHHHHhcchhHHhcCCCCCccccCCCCC
Q psy1503 154 ----------VSYASQEPW--IFA-ATIRQNILFGL----PYL----RRRYADVIRVCALQDDFDSLPNGDFTVVGERGA 212 (265)
Q Consensus 154 ----------i~~v~Q~~~--l~~-~ti~eni~~~~----~~~----~~~~~~~~~~~~l~~~i~~l~~g~~t~vg~~g~ 212 (265)
++|++|+|. +++ .|+.+|+.... ... .++..++++.+++.+.. ....+.
T Consensus 84 ~~~~~~~r~~i~~v~Q~~~~~l~p~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~----------~~~~p~ 153 (327)
T PRK11308 84 PEAQKLLRQKIQIVFQNPYGSLNPRKKVGQILEEPLLINTSLSAAERREKALAMMAKVGLRPEH----------YDRYPH 153 (327)
T ss_pred HHHHHHHhCCEEEEEcCchhhcCCccCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHCCCChHH----------hcCCCc
Confidence 899999983 555 49998886321 111 22344555555553211 123457
Q ss_pred CCCHHHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHH
Q psy1503 213 SLSGGQKARINLARAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGC 260 (265)
Q Consensus 213 ~LSgGqrqRialARal~~~~~illLDEp~s~LD~~~~~~i~~~~i~~~ 260 (265)
+||||||||++|||||+.+|+++|+||||++||..+..+|++ .+..+
T Consensus 154 ~LSgGq~QRv~iArAL~~~P~lLilDEPts~LD~~~~~~i~~-lL~~l 200 (327)
T PRK11308 154 MFSGGQRQRIAIARALMLDPDVVVADEPVSALDVSVQAQVLN-LMMDL 200 (327)
T ss_pred cCCHHHHHHHHHHHHHHcCCCEEEEECCCccCCHHHHHHHHH-HHHHH
Confidence 899999999999999999999999999999999999999876 34444
No 252
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.1e-35 Score=260.37 Aligned_cols=156 Identities=30% Similarity=0.544 Sum_probs=129.0
Q ss_pred EEEEeEEEEeCCCCCCcceeeceEEEcCCcEEEEEcCCCChHHHHHHHHhcCcCCCccEEEEcC-----------eEEEE
Q psy1503 89 VSLDNVTAQWSLQNADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSLGG-----------TVSYA 157 (265)
Q Consensus 89 i~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g-----------~i~~v 157 (265)
|+++|+++.|+. .+++|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++| .++|+
T Consensus 1 l~~~~l~~~~~~----~~l~~is~~i~~Ge~~~i~G~nG~GKStLl~~l~G~~~p~~G~v~i~g~~~~~~~~~~~~i~~~ 76 (235)
T cd03299 1 LKVENLSKDWKE----FKLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDITNLPPEKRDISYV 76 (235)
T ss_pred CeeEeEEEEeCC----ceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcCcCChhHcCEEEE
Confidence 468999999952 279999999999999999999999999999999999999999999987 38999
Q ss_pred ecCCCCcc-ccHHHHHhcCCcc---c----HHHHHHHHHHhcchhHHhcCCCCCccccCCCCCCCCHHHHHHHHHHHHHc
Q psy1503 158 SQEPWIFA-ATIRQNILFGLPY---L----RRRYADVIRVCALQDDFDSLPNGDFTVVGERGASLSGGQKARINLARAVY 229 (265)
Q Consensus 158 ~Q~~~l~~-~ti~eni~~~~~~---~----~~~~~~~~~~~~l~~~i~~l~~g~~t~vg~~g~~LSgGqrqRialARal~ 229 (265)
+|++.+|+ .|+.||+.++... . .++..++++.+++.+.+. ....+||||||||++||||++
T Consensus 77 ~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~qrl~laral~ 145 (235)
T cd03299 77 PQNYALFPHMTVYKNIAYGLKKRKVDKKEIERKVLEIAEMLGIDHLLN-----------RKPETLSGGEQQRVAIARALV 145 (235)
T ss_pred eecCccCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHHh-----------cCcccCCHHHHHHHHHHHHHH
Confidence 99999885 6999999865311 1 122344455555544433 344689999999999999999
Q ss_pred cCCCEEEEeCCCCCcCHHHHHHHHHHHHHHH
Q psy1503 230 KNADIYLLDDPLSAVDMHVGKHLFEDCISGC 260 (265)
Q Consensus 230 ~~~~illLDEp~s~LD~~~~~~i~~~~i~~~ 260 (265)
++|++++|||||++||+.+...+++ .+..+
T Consensus 146 ~~p~llllDEPt~gLD~~~~~~l~~-~l~~~ 175 (235)
T cd03299 146 VNPKILLLDEPFSALDVRTKEKLRE-ELKKI 175 (235)
T ss_pred cCCCEEEECCCcccCCHHHHHHHHH-HHHHH
Confidence 9999999999999999999988865 34333
No 253
>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.2e-35 Score=263.92 Aligned_cols=159 Identities=21% Similarity=0.389 Sum_probs=129.5
Q ss_pred CcEEEEeEEEEeCCCCCCcceeeceEEEcCCcEEEEEcCCCChHHHHHHHHhcCcCCC-----ccEEEEcC---------
Q psy1503 87 GHVSLDNVTAQWSLQNADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRIS-----SGKVSLGG--------- 152 (265)
Q Consensus 87 ~~i~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~-----~G~i~~~g--------- 152 (265)
+.++++|++++|+. ..+|+|+||++++|++++|+|+||||||||+++|+|+++|+ +|+|.++|
T Consensus 6 ~~l~~~nl~~~~~~---~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~g~i~~~G~i~~~g~~i~~~~~~ 82 (261)
T PRK14258 6 PAIKVNNLSFYYDT---QKILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESEVRVEGRVEFFNQNIYERRVN 82 (261)
T ss_pred ceEEEeeEEEEeCC---eeEeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCccccceEEECCEEhhccccc
Confidence 36899999999963 35899999999999999999999999999999999999985 79888866
Q ss_pred ------eEEEEecCCCCccccHHHHHhcCCc---c-c----HHHHHHHHHHhcchhHHhcCCCCCccccCCCCCCCCHHH
Q psy1503 153 ------TVSYASQEPWIFAATIRQNILFGLP---Y-L----RRRYADVIRVCALQDDFDSLPNGDFTVVGERGASLSGGQ 218 (265)
Q Consensus 153 ------~i~~v~Q~~~l~~~ti~eni~~~~~---~-~----~~~~~~~~~~~~l~~~i~~l~~g~~t~vg~~g~~LSgGq 218 (265)
.++|++|++.+|+.|+.||+.++.. . . .++..++++..++.+.+. ...+..+.+|||||
T Consensus 83 ~~~~~~~i~~~~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LSgGq 155 (261)
T PRK14258 83 LNRLRRQVSMVHPKPNLFPMSVYDNVAYGVKIVGWRPKLEIDDIVESALKDADLWDEIK-------HKIHKSALDLSGGQ 155 (261)
T ss_pred hHHhhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchhh-------hHhcCCcccCCHHH
Confidence 1899999999999999999986421 1 1 122334444444433222 12345678999999
Q ss_pred HHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHH
Q psy1503 219 KARINLARAVYKNADIYLLDDPLSAVDMHVGKHLFED 255 (265)
Q Consensus 219 rqRialARal~~~~~illLDEp~s~LD~~~~~~i~~~ 255 (265)
|||++|||||+++|+++||||||++||+.+...+++.
T Consensus 156 ~qrv~laral~~~p~vllLDEP~~~LD~~~~~~l~~~ 192 (261)
T PRK14258 156 QQRLCIARALAVKPKVLLMDEPCFGLDPIASMKVESL 192 (261)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHH
Confidence 9999999999999999999999999999999887653
No 254
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=100.00 E-value=7.7e-36 Score=254.32 Aligned_cols=139 Identities=27% Similarity=0.465 Sum_probs=120.9
Q ss_pred cEEEEeEEEEeCCC---CCCcceeeceEEEcCCcEEEEEcCCCChHHHHHHHHhcCc--CCCccEEEEcCe---------
Q psy1503 88 HVSLDNVTAQWSLQ---NADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNEL--RISSGKVSLGGT--------- 153 (265)
Q Consensus 88 ~i~~~~~~~~~~~~---~~~~~l~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~g~~--~~~~G~i~~~g~--------- 153 (265)
.++++|++|+|+.. ...++++++||++++|++++|+||||||||||+++|+|++ +|++|+|.++|.
T Consensus 3 ~l~~~~ls~~~~~~~~~~~~~~l~~~~~~i~~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~~~~G~i~~~g~~~~~~~~~~ 82 (194)
T cd03213 3 TLSFRNLTVTVKSSPSKSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLGVSGEVLINGRPLDKRSFRK 82 (194)
T ss_pred EEEEEeeEEEEecCCCcccccceecceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEeCchHhhhh
Confidence 48899999999641 0246999999999999999999999999999999999999 999999999873
Q ss_pred -EEEEecCCCCcc-ccHHHHHhcCCcccHHHHHHHHHHhcchhHHhcCCCCCccccCCCCCCCCHHHHHHHHHHHHHccC
Q psy1503 154 -VSYASQEPWIFA-ATIRQNILFGLPYLRRRYADVIRVCALQDDFDSLPNGDFTVVGERGASLSGGQKARINLARAVYKN 231 (265)
Q Consensus 154 -i~~v~Q~~~l~~-~ti~eni~~~~~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~vg~~g~~LSgGqrqRialARal~~~ 231 (265)
++|++|++.+|+ .|++||+.++.. .. .||||||||++|||||+.+
T Consensus 83 ~i~~~~q~~~~~~~~t~~~~i~~~~~------------~~---------------------~LS~G~~qrv~laral~~~ 129 (194)
T cd03213 83 IIGYVPQDDILHPTLTVRETLMFAAK------------LR---------------------GLSGGERKRVSIALELVSN 129 (194)
T ss_pred eEEEccCcccCCCCCcHHHHHHHHHH------------hc---------------------cCCHHHHHHHHHHHHHHcC
Confidence 899999999886 599999865310 00 7999999999999999999
Q ss_pred CCEEEEeCCCCCcCHHHHHHHHHHHHHHH
Q psy1503 232 ADIYLLDDPLSAVDMHVGKHLFEDCISGC 260 (265)
Q Consensus 232 ~~illLDEp~s~LD~~~~~~i~~~~i~~~ 260 (265)
|+++||||||++||..+.+.+++ .+..+
T Consensus 130 p~illlDEP~~~LD~~~~~~l~~-~l~~~ 157 (194)
T cd03213 130 PSLLFLDEPTSGLDSSSALQVMS-LLRRL 157 (194)
T ss_pred CCEEEEeCCCcCCCHHHHHHHHH-HHHHH
Confidence 99999999999999999988765 44444
No 255
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=100.00 E-value=1.6e-35 Score=264.96 Aligned_cols=160 Identities=24% Similarity=0.393 Sum_probs=129.6
Q ss_pred cEEEEeEEEEeCCCCCCcceeeceEEEcCCcEEEEEcCCCChHHHHHHHHhcCcCCC--------ccEEEEcCe------
Q psy1503 88 HVSLDNVTAQWSLQNADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRIS--------SGKVSLGGT------ 153 (265)
Q Consensus 88 ~i~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~--------~G~i~~~g~------ 153 (265)
+|+++|++++|+. .++|+++||+|++|++++|+||||||||||+++|+|+++|+ +|+|.++|.
T Consensus 1 ml~~~nl~~~~~~---~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~laG~~~p~~~~~~~~~~G~i~~~g~~~~~~~ 77 (272)
T PRK13547 1 MLTADHLHVARRH---RAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGEPLAAID 77 (272)
T ss_pred CeEEEEEEEEECC---EeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCcccccccCCceEEEECCEEcccCC
Confidence 3789999999953 46899999999999999999999999999999999999998 999999883
Q ss_pred -------EEEEecCCC-CccccHHHHHhcCCc-c----------cHHHHHHHHHHhcchhHHhcCCCCCccccCCCCCCC
Q psy1503 154 -------VSYASQEPW-IFAATIRQNILFGLP-Y----------LRRRYADVIRVCALQDDFDSLPNGDFTVVGERGASL 214 (265)
Q Consensus 154 -------i~~v~Q~~~-l~~~ti~eni~~~~~-~----------~~~~~~~~~~~~~l~~~i~~l~~g~~t~vg~~g~~L 214 (265)
++|++|++. +++.|++||+.++.. . ..++..++++..++ .+..+....+|
T Consensus 78 ~~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l-----------~~~~~~~~~~L 146 (272)
T PRK13547 78 APRLARLRAVLPQAAQPAFAFSAREIVLLGRYPHARRAGALTHRDGEIAWQALALAGA-----------TALVGRDVTTL 146 (272)
T ss_pred HHHHHhhcEEecccCCCCCCCcHHHHHhhcccccccccccCCHHHHHHHHHHHHHcCc-----------HhhhcCCcccC
Confidence 799999986 467899999987531 1 01122333333333 23345567899
Q ss_pred CHHHHHHHHHHHHHc---------cCCCEEEEeCCCCCcCHHHHHHHHHHHHHHHhh
Q psy1503 215 SGGQKARINLARAVY---------KNADIYLLDDPLSAVDMHVGKHLFEDCISGCLT 262 (265)
Q Consensus 215 SgGqrqRialARal~---------~~~~illLDEp~s~LD~~~~~~i~~~~i~~~l~ 262 (265)
|||||||++|||||+ .+|+++||||||++||+.+...+++ .+..+.+
T Consensus 147 SgG~~qrv~laral~~~~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~-~l~~~~~ 202 (272)
T PRK13547 147 SGGELARVQFARVLAQLWPPHDAAQPPRYLLLDEPTAALDLAHQHRLLD-TVRRLAR 202 (272)
T ss_pred CHHHHHHHHHHHHHhccccccccCCCCCEEEEcCccccCCHHHHHHHHH-HHHHHHH
Confidence 999999999999999 5999999999999999999998865 4444443
No 256
>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.8e-35 Score=260.97 Aligned_cols=162 Identities=26% Similarity=0.414 Sum_probs=127.2
Q ss_pred cEEEEeEEEEeCCCCCCcceeeceEEEcCCcEEEEEcCCCChHHHHHHHHhcCcCCC-----ccEEEEcC----------
Q psy1503 88 HVSLDNVTAQWSLQNADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRIS-----SGKVSLGG---------- 152 (265)
Q Consensus 88 ~i~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~-----~G~i~~~g---------- 152 (265)
.++++|++++|+. .++++|+||+|++|++++|+||||||||||+++|+|+++|+ +|+|.++|
T Consensus 4 ~l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~ 80 (252)
T PRK14272 4 LLSAQDVNIYYGD---KQAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYGPRVDP 80 (252)
T ss_pred EEEEeeeEEEECC---EEeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceeEEECCEEcccCccCH
Confidence 5889999999963 46999999999999999999999999999999999999874 89999876
Q ss_pred -----eEEEEecCCCCcc-ccHHHHHhcCCcc----cHHHH----HHHHHHhcchhHHhcCCCCCccccCCCCCCCCHHH
Q psy1503 153 -----TVSYASQEPWIFA-ATIRQNILFGLPY----LRRRY----ADVIRVCALQDDFDSLPNGDFTVVGERGASLSGGQ 218 (265)
Q Consensus 153 -----~i~~v~Q~~~l~~-~ti~eni~~~~~~----~~~~~----~~~~~~~~l~~~i~~l~~g~~t~vg~~g~~LSgGq 218 (265)
.++|++|++.+|+ .|+.||+.++... ..+.. .+.++..++...+ + ........+|||||
T Consensus 81 ~~~~~~i~~~~q~~~~~~~~t~~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l---~----~~~~~~~~~LS~G~ 153 (252)
T PRK14272 81 VAMRRRVGMVFQKPNPFPTMSVFDNVVAGLKLAGIRDRDHLMEVAERSLRGAALWDEV---K----DRLKTPATGLSGGQ 153 (252)
T ss_pred HHhhceeEEEeccCccCcCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCcchhh---h----hhhcCCcccCCHHH
Confidence 2899999999887 5999999864211 11111 1122222222111 1 12234567899999
Q ss_pred HHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHH
Q psy1503 219 KARINLARAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGC 260 (265)
Q Consensus 219 rqRialARal~~~~~illLDEp~s~LD~~~~~~i~~~~i~~~ 260 (265)
|||++|||||+++|+++||||||++||+.+...+.+ .+..+
T Consensus 154 ~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~-~l~~~ 194 (252)
T PRK14272 154 QQRLCIARALAVEPEILLMDEPTSALDPASTARIED-LMTDL 194 (252)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHH-HHHHH
Confidence 999999999999999999999999999999988765 44444
No 257
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=100.00 E-value=2.6e-35 Score=261.23 Aligned_cols=165 Identities=21% Similarity=0.316 Sum_probs=126.9
Q ss_pred CcEEEEeEEEEeCCCCCCcceeeceEEEcCCcEEEEEcCCCChHHHHHHHHhcCcCCCccEEEEcCe-------------
Q psy1503 87 GHVSLDNVTAQWSLQNADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSLGGT------------- 153 (265)
Q Consensus 87 ~~i~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g~------------- 153 (265)
..++++|++++|+. .++++|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.
T Consensus 5 ~~l~~~~l~~~~~~---~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~i~~~~~~ 81 (258)
T PRK11701 5 PLLSVRGLTKLYGP---RKGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPDAGEVHYRMRDGQLRDLYALSEA 81 (258)
T ss_pred ceEEEeeeEEEcCC---ceeeeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCccccccccccCCHH
Confidence 36899999999963 46899999999999999999999999999999999999999999988762
Q ss_pred ---------EEEEecCCC--Ccc-ccHHHHHhcCC---c-ccHHHHHHHHHHhcchhHHhcCCCCCccccCCCCCCCCHH
Q psy1503 154 ---------VSYASQEPW--IFA-ATIRQNILFGL---P-YLRRRYADVIRVCALQDDFDSLPNGDFTVVGERGASLSGG 217 (265)
Q Consensus 154 ---------i~~v~Q~~~--l~~-~ti~eni~~~~---~-~~~~~~~~~~~~~~l~~~i~~l~~g~~t~vg~~g~~LSgG 217 (265)
++|++|++. ++. .|+.+|+.+.. . .......+ ...+.++.++.. .+.....+.+||||
T Consensus 82 ~~~~~~~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~-----~~~~~l~~~~l~-~~~~~~~~~~LS~G 155 (258)
T PRK11701 82 ERRRLLRTEWGFVHQHPRDGLRMQVSAGGNIGERLMAVGARHYGDIRA-----TAGDWLERVEID-AARIDDLPTTFSGG 155 (258)
T ss_pred HHHHHhhcceEEEeeCcccccCccccHHHHHHHHHHHhccCcHHHHHH-----HHHHHHHHcCCC-hhHHhCCCccCCHH
Confidence 799999984 343 48899986421 0 11111111 011223333221 12345677899999
Q ss_pred HHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHHh
Q psy1503 218 QKARINLARAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGCL 261 (265)
Q Consensus 218 qrqRialARal~~~~~illLDEp~s~LD~~~~~~i~~~~i~~~l 261 (265)
||||++|||||+.+|+++||||||++||+.+.+.+++ ++..+.
T Consensus 156 q~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~-~l~~~~ 198 (258)
T PRK11701 156 MQQRLQIARNLVTHPRLVFMDEPTGGLDVSVQARLLD-LLRGLV 198 (258)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHH-HHHHHH
Confidence 9999999999999999999999999999999988755 444443
No 258
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=100.00 E-value=1.4e-35 Score=250.06 Aligned_cols=129 Identities=22% Similarity=0.440 Sum_probs=115.6
Q ss_pred cEEEEeEEEEeCCCCCCcceeeceEEEcCCcEEEEEcCCCChHHHHHHHHhcCcCCCccEEEEcC--------------e
Q psy1503 88 HVSLDNVTAQWSLQNADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSLGG--------------T 153 (265)
Q Consensus 88 ~i~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g--------------~ 153 (265)
.++++|++++| +++++||++++|++++|+||||||||||+++|+|+++|++|+|.++| .
T Consensus 4 ~l~~~~l~~~~-------~l~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 76 (182)
T cd03215 4 VLEVRGLSVKG-------AVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPPASGEITLDGKPVTRRSPRDAIRAG 76 (182)
T ss_pred EEEEeccEEEe-------eecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccCHHHHHhCC
Confidence 68999999987 69999999999999999999999999999999999999999999987 2
Q ss_pred EEEEecCC---CCc-cccHHHHHhcCCcccHHHHHHHHHHhcchhHHhcCCCCCccccCCCCCCCCHHHHHHHHHHHHHc
Q psy1503 154 VSYASQEP---WIF-AATIRQNILFGLPYLRRRYADVIRVCALQDDFDSLPNGDFTVVGERGASLSGGQKARINLARAVY 229 (265)
Q Consensus 154 i~~v~Q~~---~l~-~~ti~eni~~~~~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~vg~~g~~LSgGqrqRialARal~ 229 (265)
++|++|++ .++ ..|++||+.++.. ||||||||++||||++
T Consensus 77 i~~~~q~~~~~~~~~~~t~~e~l~~~~~------------------------------------LS~G~~qrl~la~al~ 120 (182)
T cd03215 77 IAYVPEDRKREGLVLDLSVAENIALSSL------------------------------------LSGGNQQKVVLARWLA 120 (182)
T ss_pred eEEecCCcccCcccCCCcHHHHHHHHhh------------------------------------cCHHHHHHHHHHHHHc
Confidence 89999985 355 4699999876421 9999999999999999
Q ss_pred cCCCEEEEeCCCCCcCHHHHHHHHHHHHHHH
Q psy1503 230 KNADIYLLDDPLSAVDMHVGKHLFEDCISGC 260 (265)
Q Consensus 230 ~~~~illLDEp~s~LD~~~~~~i~~~~i~~~ 260 (265)
.+|+++||||||++||+.+.+.+.+ ++..+
T Consensus 121 ~~p~llllDEP~~~LD~~~~~~l~~-~l~~~ 150 (182)
T cd03215 121 RDPRVLILDEPTRGVDVGAKAEIYR-LIREL 150 (182)
T ss_pred cCCCEEEECCCCcCCCHHHHHHHHH-HHHHH
Confidence 9999999999999999999988865 44444
No 259
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=100.00 E-value=3.2e-35 Score=260.16 Aligned_cols=161 Identities=21% Similarity=0.343 Sum_probs=128.8
Q ss_pred cEEEEeEEEEeCCCCCCcceeeceEEEcCCcEEEEEcCCCChHHHHHHHHhcCcCC----CccEEEEcC-----------
Q psy1503 88 HVSLDNVTAQWSLQNADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRI----SSGKVSLGG----------- 152 (265)
Q Consensus 88 ~i~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~----~~G~i~~~g----------- 152 (265)
.++++|++++|+ .++|+++||+|++|++++|+||||||||||+++|+|+++| ++|+|.++|
T Consensus 4 ~l~~~~l~~~~~----~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~G~i~~~g~~i~~~~~~~~ 79 (254)
T PRK10418 4 QIELRNIALQAA----QPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDGKPVAPCALRGR 79 (254)
T ss_pred EEEEeCeEEEec----cceecceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCcCCEEEECCeeccccccccc
Confidence 589999999992 3589999999999999999999999999999999999999 999999987
Q ss_pred eEEEEecCCC-Ccc--ccHHHHHhc-----CCcccHHHHHHHHHHhcchhHHhcCCCCCccccCCCCCCCCHHHHHHHHH
Q psy1503 153 TVSYASQEPW-IFA--ATIRQNILF-----GLPYLRRRYADVIRVCALQDDFDSLPNGDFTVVGERGASLSGGQKARINL 224 (265)
Q Consensus 153 ~i~~v~Q~~~-l~~--~ti~eni~~-----~~~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~vg~~g~~LSgGqrqRial 224 (265)
.++|++|++. .|. .|+.+|+.+ +.....+++.++++.+++.+. .+.++....+||||||||++|
T Consensus 80 ~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~--------~~~~~~~~~~LS~Gq~qrv~l 151 (254)
T PRK10418 80 KIATIMQNPRSAFNPLHTMHTHARETCLALGKPADDATLTAALEAVGLENA--------ARVLKLYPFEMSGGMLQRMMI 151 (254)
T ss_pred eEEEEecCCccccCccccHHHHHHHHHHHcCCChHHHHHHHHHHHcCCCCh--------hhhhhcCCcccCHHHHHHHHH
Confidence 2899999984 343 488888754 222223344555555554321 123455678999999999999
Q ss_pred HHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHHh
Q psy1503 225 ARAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGCL 261 (265)
Q Consensus 225 ARal~~~~~illLDEp~s~LD~~~~~~i~~~~i~~~l 261 (265)
||||+.+|+++||||||++||+.+...+++ ++..+.
T Consensus 152 aral~~~p~lLlLDEPt~~LD~~~~~~l~~-~L~~~~ 187 (254)
T PRK10418 152 ALALLCEAPFIIADEPTTDLDVVAQARILD-LLESIV 187 (254)
T ss_pred HHHHhcCCCEEEEeCCCcccCHHHHHHHHH-HHHHHH
Confidence 999999999999999999999999888755 444443
No 260
>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.7e-35 Score=262.75 Aligned_cols=163 Identities=23% Similarity=0.403 Sum_probs=129.2
Q ss_pred CcEEEEeEEEEeCCCCCCcceeeceEEEcCCcEEEEEcCCCChHHHHHHHHhcCcCCCccEEEEcC--------------
Q psy1503 87 GHVSLDNVTAQWSLQNADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSLGG-------------- 152 (265)
Q Consensus 87 ~~i~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g-------------- 152 (265)
..+.++|++++|+. .++++|+||++++|++++|+||||||||||+++|+|+++|++|+|.++|
T Consensus 9 ~~i~~~~~~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~iaG~~~~~~G~v~~~G~~~~~g~~~~~~~~ 85 (257)
T PRK14246 9 DVFNISRLYLYIND---KAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYFGKDIFQIDA 85 (257)
T ss_pred hheeeeeEEEecCC---ceeEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCcCceeEcCEEEECCcccccCCH
Confidence 47999999999963 4689999999999999999999999999999999999999997776654
Q ss_pred -----eEEEEecCCCCccc-cHHHHHhcCCc---c-cHH----HHHHHHHHhcchhHHhcCCCCCccccCCCCCCCCHHH
Q psy1503 153 -----TVSYASQEPWIFAA-TIRQNILFGLP---Y-LRR----RYADVIRVCALQDDFDSLPNGDFTVVGERGASLSGGQ 218 (265)
Q Consensus 153 -----~i~~v~Q~~~l~~~-ti~eni~~~~~---~-~~~----~~~~~~~~~~l~~~i~~l~~g~~t~vg~~g~~LSgGq 218 (265)
.++|++|++.+|++ |+.||+.++.. . ..+ +..++++..++.+.+ .......+..|||||
T Consensus 86 ~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-------~~~~~~~~~~LS~G~ 158 (257)
T PRK14246 86 IKLRKEVGMVFQQPNPFPHLSIYDNIAYPLKSHGIKEKREIKKIVEECLRKVGLWKEV-------YDRLNSPASQLSGGQ 158 (257)
T ss_pred HHHhcceEEEccCCccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCccc-------hhhhcCCcccCCHHH
Confidence 28999999999875 99999987521 1 111 122333333332211 112345677899999
Q ss_pred HHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHH
Q psy1503 219 KARINLARAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGC 260 (265)
Q Consensus 219 rqRialARal~~~~~illLDEp~s~LD~~~~~~i~~~~i~~~ 260 (265)
|||++||||++.+|+++||||||++||..+...+.+ .+..+
T Consensus 159 ~qrl~laral~~~P~llllDEPt~~LD~~~~~~l~~-~l~~~ 199 (257)
T PRK14246 159 QQRLTIARALALKPKVLLMDEPTSMIDIVNSQAIEK-LITEL 199 (257)
T ss_pred HHHHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHH-HHHHH
Confidence 999999999999999999999999999999988754 44444
No 261
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.9e-35 Score=251.41 Aligned_cols=139 Identities=24% Similarity=0.402 Sum_probs=120.3
Q ss_pred cEEEEeEEEEeCCCC-CCcceeeceEEEcCCcEEEEEcCCCChHHHHHHHHhcCc--CCCccEEEEcC---------eEE
Q psy1503 88 HVSLDNVTAQWSLQN-ADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNEL--RISSGKVSLGG---------TVS 155 (265)
Q Consensus 88 ~i~~~~~~~~~~~~~-~~~~l~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~g~~--~~~~G~i~~~g---------~i~ 155 (265)
.++++|+++.|+... ..++++++||++++|++++|+||||||||||+++|+|++ +|++|+|.++| .++
T Consensus 3 ~l~~~~l~~~~~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~G~i~~~g~~~~~~~~~~i~ 82 (192)
T cd03232 3 VLTWKNLNYTVPVKGGKRQLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKTAGVITGEILINGRPLDKNFQRSTG 82 (192)
T ss_pred EEEEeeeEEEecCCCCceEeEEccEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEEECCEehHHHhhhceE
Confidence 589999999996421 246899999999999999999999999999999999986 48999999987 389
Q ss_pred EEecCCCCcc-ccHHHHHhcCCcccHHHHHHHHHHhcchhHHhcCCCCCccccCCCCCCCCHHHHHHHHHHHHHccCCCE
Q psy1503 156 YASQEPWIFA-ATIRQNILFGLPYLRRRYADVIRVCALQDDFDSLPNGDFTVVGERGASLSGGQKARINLARAVYKNADI 234 (265)
Q Consensus 156 ~v~Q~~~l~~-~ti~eni~~~~~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~vg~~g~~LSgGqrqRialARal~~~~~i 234 (265)
|++|++.+++ .|++||+.++.. ++ +||||||||++||||++.+|++
T Consensus 83 ~~~q~~~~~~~~tv~~~l~~~~~---------~~------------------------~LSgGe~qrv~la~al~~~p~v 129 (192)
T cd03232 83 YVEQQDVHSPNLTVREALRFSAL---------LR------------------------GLSVEQRKRLTIGVELAAKPSI 129 (192)
T ss_pred EecccCccccCCcHHHHHHHHHH---------Hh------------------------cCCHHHhHHHHHHHHHhcCCcE
Confidence 9999998887 499999976310 00 7999999999999999999999
Q ss_pred EEEeCCCCCcCHHHHHHHHHHHHHHH
Q psy1503 235 YLLDDPLSAVDMHVGKHLFEDCISGC 260 (265)
Q Consensus 235 llLDEp~s~LD~~~~~~i~~~~i~~~ 260 (265)
+||||||++||+.+...+++. +..+
T Consensus 130 lllDEP~~~LD~~~~~~l~~~-l~~~ 154 (192)
T cd03232 130 LFLDEPTSGLDSQAAYNIVRF-LKKL 154 (192)
T ss_pred EEEeCCCcCCCHHHHHHHHHH-HHHH
Confidence 999999999999999988663 4443
No 262
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=100.00 E-value=2.8e-35 Score=284.42 Aligned_cols=159 Identities=24% Similarity=0.450 Sum_probs=131.9
Q ss_pred CcEEEEeEEEEeCCCCCCcceeeceEEEcCCcEEEEEcCCCChHHHHHHHHhcCcCCCccEEEEcCe-------------
Q psy1503 87 GHVSLDNVTAQWSLQNADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSLGGT------------- 153 (265)
Q Consensus 87 ~~i~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g~------------- 153 (265)
..++++|++++|+. ..+|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.
T Consensus 10 ~~l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~ 86 (510)
T PRK15439 10 PLLCARSISKQYSG---VEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTLEIGGNPCARLTPAKAHQL 86 (510)
T ss_pred ceEEEEeEEEEeCC---ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHHHhC
Confidence 36999999999963 46899999999999999999999999999999999999999999999872
Q ss_pred -EEEEecCCCCcc-ccHHHHHhcCCccc---HHHHHHHHHHhcchhHHhcCCCCCccccCCCCCCCCHHHHHHHHHHHHH
Q psy1503 154 -VSYASQEPWIFA-ATIRQNILFGLPYL---RRRYADVIRVCALQDDFDSLPNGDFTVVGERGASLSGGQKARINLARAV 228 (265)
Q Consensus 154 -i~~v~Q~~~l~~-~ti~eni~~~~~~~---~~~~~~~~~~~~l~~~i~~l~~g~~t~vg~~g~~LSgGqrqRialARal 228 (265)
++|++|++.+++ .|+.||+.++.... .++..++++..++.. .......+||||||||++|||||
T Consensus 87 ~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LSgG~~qrv~la~aL 155 (510)
T PRK15439 87 GIYLVPQEPLLFPNLSVKENILFGLPKRQASMQKMKQLLAALGCQL-----------DLDSSAGSLEVADRQIVEILRGL 155 (510)
T ss_pred CEEEEeccCccCCCCcHHHHhhcccccchHHHHHHHHHHHHcCCCc-----------cccCChhhCCHHHHHHHHHHHHH
Confidence 899999998886 59999999864321 223344444444432 22345578999999999999999
Q ss_pred ccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHH
Q psy1503 229 YKNADIYLLDDPLSAVDMHVGKHLFEDCISGC 260 (265)
Q Consensus 229 ~~~~~illLDEp~s~LD~~~~~~i~~~~i~~~ 260 (265)
+.+|+++||||||++||+.+...+++ .+..+
T Consensus 156 ~~~p~lllLDEPt~~LD~~~~~~l~~-~l~~~ 186 (510)
T PRK15439 156 MRDSRILILDEPTASLTPAETERLFS-RIREL 186 (510)
T ss_pred HcCCCEEEEECCCCCCCHHHHHHHHH-HHHHH
Confidence 99999999999999999999999866 34443
No 263
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.5e-35 Score=270.07 Aligned_cols=160 Identities=21% Similarity=0.334 Sum_probs=126.0
Q ss_pred cEEEEeEEEEeCCCCC-CcceeeceEEEcCCcEEEEEcCCCChHHHHHHHHhcCcC----CCccEEEEcCe---------
Q psy1503 88 HVSLDNVTAQWSLQNA-DLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELR----ISSGKVSLGGT--------- 153 (265)
Q Consensus 88 ~i~~~~~~~~~~~~~~-~~~l~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~----~~~G~i~~~g~--------- 153 (265)
.++++|+++.|+.... ..+|+||||+|++||+++|+|+||||||||+++|+|+++ |++|+|.++|.
T Consensus 3 ~L~v~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~~~G~~i~~~~~~~ 82 (326)
T PRK11022 3 LLNVDKLSVHFGDESAPFRAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQRISEKE 82 (326)
T ss_pred eEEEeCeEEEECCCCccEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCCcceEEEECCEECCcCCHHH
Confidence 4899999999964322 358999999999999999999999999999999999997 48999999883
Q ss_pred --------EEEEecCCC--Ccc-ccHHHHHhcC----Ccc----cHHHHHHHHHHhcchhHHhcCCCCCccccCCCCCCC
Q psy1503 154 --------VSYASQEPW--IFA-ATIRQNILFG----LPY----LRRRYADVIRVCALQDDFDSLPNGDFTVVGERGASL 214 (265)
Q Consensus 154 --------i~~v~Q~~~--l~~-~ti~eni~~~----~~~----~~~~~~~~~~~~~l~~~i~~l~~g~~t~vg~~g~~L 214 (265)
++|++|++. +++ .|+.+++... ... ..++..++++..++.+.. ......+.+|
T Consensus 83 ~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~l~~~~~~~~~~~~~~~~~~L~~~gL~~~~--------~~l~~~p~~L 154 (326)
T PRK11022 83 RRNLVGAEVAMIFQDPMTSLNPCYTVGFQIMEAIKVHQGGNKKTRRQRAIDLLNQVGIPDPA--------SRLDVYPHQL 154 (326)
T ss_pred HHHHhCCCEEEEecCchhhcCCcCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChH--------HHHhCCchhC
Confidence 899999985 444 4777665421 111 123344555555553211 1234556799
Q ss_pred CHHHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHH
Q psy1503 215 SGGQKARINLARAVYKNADIYLLDDPLSAVDMHVGKHLFED 255 (265)
Q Consensus 215 SgGqrqRialARal~~~~~illLDEp~s~LD~~~~~~i~~~ 255 (265)
||||||||+|||||+.+|+++|+||||++||+.++.++++.
T Consensus 155 SgGq~QRv~iArAL~~~P~llilDEPts~LD~~~~~~il~l 195 (326)
T PRK11022 155 SGGMSQRVMIAMAIACRPKLLIADEPTTALDVTIQAQIIEL 195 (326)
T ss_pred CHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHH
Confidence 99999999999999999999999999999999999998763
No 264
>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.
Probab=100.00 E-value=2.8e-35 Score=272.53 Aligned_cols=152 Identities=26% Similarity=0.464 Sum_probs=123.9
Q ss_pred eEEEEeCCCCCCcceeeceEEEcCCcEEEEEcCCCChHHHHHHHHhcCcCCCccEEEEcCe-----------------EE
Q psy1503 93 NVTAQWSLQNADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSLGGT-----------------VS 155 (265)
Q Consensus 93 ~~~~~~~~~~~~~~l~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g~-----------------i~ 155 (265)
|++++|++ . .+ ++||+|++|++++|+||||||||||+++|+|+++|++|+|.++|. ++
T Consensus 4 ~l~~~~~~---~-~~-~isl~i~~Gei~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~~i~ 78 (354)
T TIGR02142 4 RFSKRLGD---F-SL-DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRKGIFLPPEKRRIG 78 (354)
T ss_pred EEEEEECC---E-EE-EEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccCccccccchhhCCeE
Confidence 78999953 2 35 999999999999999999999999999999999999999998762 79
Q ss_pred EEecCCCCcc-ccHHHHHhcCCcc-c----HHHHHHHHHHhcchhHHhcCCCCCccccCCCCCCCCHHHHHHHHHHHHHc
Q psy1503 156 YASQEPWIFA-ATIRQNILFGLPY-L----RRRYADVIRVCALQDDFDSLPNGDFTVVGERGASLSGGQKARINLARAVY 229 (265)
Q Consensus 156 ~v~Q~~~l~~-~ti~eni~~~~~~-~----~~~~~~~~~~~~l~~~i~~l~~g~~t~vg~~g~~LSgGqrqRialARal~ 229 (265)
|++|++.+|+ .|++||+.++... . .++..++++..++.+. ......+||||||||++|||||+
T Consensus 79 ~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~gL~~~-----------~~~~~~~LSgGqkqRvalAraL~ 147 (354)
T TIGR02142 79 YVFQEARLFPHLSVRGNLRYGMKRARPSERRISFERVIELLGIGHL-----------LGRLPGRLSGGEKQRVAIGRALL 147 (354)
T ss_pred EEecCCccCCCCcHHHHHHHHhhccChhHHHHHHHHHHHHcCChhH-----------hcCChhhCCHHHHHHHHHHHHHH
Confidence 9999999997 5999999986421 1 1223444444444333 33455789999999999999999
Q ss_pred cCCCEEEEeCCCCCcCHHHHHHHHHHHHHHHh
Q psy1503 230 KNADIYLLDDPLSAVDMHVGKHLFEDCISGCL 261 (265)
Q Consensus 230 ~~~~illLDEp~s~LD~~~~~~i~~~~i~~~l 261 (265)
.+|+++||||||++||+.+.+.+++ .+..+.
T Consensus 148 ~~p~lllLDEPts~LD~~~~~~l~~-~L~~l~ 178 (354)
T TIGR02142 148 SSPRLLLMDEPLAALDDPRKYEILP-YLERLH 178 (354)
T ss_pred cCCCEEEEcCCCcCCCHHHHHHHHH-HHHHHH
Confidence 9999999999999999999998865 344443
No 265
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=100.00 E-value=2.3e-35 Score=284.35 Aligned_cols=158 Identities=18% Similarity=0.312 Sum_probs=128.7
Q ss_pred cEEEEeEEEEeCCCCCCcceeeceEEEcCCcEEEEEcCCCChHHHHHHHHhcCcCCCccEEEEcC--------------e
Q psy1503 88 HVSLDNVTAQWSLQNADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSLGG--------------T 153 (265)
Q Consensus 88 ~i~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g--------------~ 153 (265)
.|+++|++++|++ .++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++| .
T Consensus 4 ~i~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~ 80 (501)
T PRK10762 4 LLQLKGIDKAFPG---VKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGSILYLGKEVTFNGPKSSQEAG 80 (501)
T ss_pred eEEEeeeEEEeCC---eEEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhCC
Confidence 6899999999953 4689999999999999999999999999999999999999999999987 2
Q ss_pred EEEEecCCCCcc-ccHHHHHhcCCcc-------cHH----HHHHHHHHhcchhHHhcCCCCCccccCCCCCCCCHHHHHH
Q psy1503 154 VSYASQEPWIFA-ATIRQNILFGLPY-------LRR----RYADVIRVCALQDDFDSLPNGDFTVVGERGASLSGGQKAR 221 (265)
Q Consensus 154 i~~v~Q~~~l~~-~ti~eni~~~~~~-------~~~----~~~~~~~~~~l~~~i~~l~~g~~t~vg~~g~~LSgGqrqR 221 (265)
++|++|++.+++ .|++||+.++... +.. +..++++.+++.+ .......+||||||||
T Consensus 81 i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LSgG~~qr 149 (501)
T PRK10762 81 IGIIHQELNLIPQLTIAENIFLGREFVNRFGRIDWKKMYAEADKLLARLNLRF-----------SSDKLVGELSIGEQQM 149 (501)
T ss_pred EEEEEcchhccCCCcHHHHhhhccccccccCccCHHHHHHHHHHHHHHcCCCC-----------CccCchhhCCHHHHHH
Confidence 899999998886 5999999876321 111 1222233332221 2234567899999999
Q ss_pred HHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHH
Q psy1503 222 INLARAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGC 260 (265)
Q Consensus 222 ialARal~~~~~illLDEp~s~LD~~~~~~i~~~~i~~~ 260 (265)
++|||||+.+|+++||||||++||+.+...+++ .+..+
T Consensus 150 v~la~al~~~p~lllLDEPt~~LD~~~~~~l~~-~l~~l 187 (501)
T PRK10762 150 VEIAKVLSFESKVIIMDEPTDALTDTETESLFR-VIREL 187 (501)
T ss_pred HHHHHHHhcCCCEEEEeCCcCCCCHHHHHHHHH-HHHHH
Confidence 999999999999999999999999999998865 44433
No 266
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=100.00 E-value=7.4e-36 Score=250.71 Aligned_cols=158 Identities=27% Similarity=0.434 Sum_probs=130.3
Q ss_pred cEEEEeEEEEeCCCCCCcceeeceEEEcCCcEEEEEcCCCChHHHHHHHHhcCcCCCccEEEEcCe------------EE
Q psy1503 88 HVSLDNVTAQWSLQNADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSLGGT------------VS 155 (265)
Q Consensus 88 ~i~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g~------------i~ 155 (265)
++++.+++++|+. ...+++||||+++.|++++|.|||||||||+|++|.+++.|++|+|.++|. ||
T Consensus 1 Ml~v~~l~K~y~~--~v~AvrdVSF~ae~Gei~GlLG~NGAGKTT~LRmiatlL~P~~G~v~idg~d~~~~p~~vrr~IG 78 (245)
T COG4555 1 MLEVTDLTKSYGS--KVQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDSGKVTIDGVDTVRDPSFVRRKIG 78 (245)
T ss_pred CeeeeehhhhccC--HHhhhhheeEEeccceEEEEEcCCCCCchhHHHHHHHhccCCCceEEEeecccccChHHHhhhcc
Confidence 4788999999975 234899999999999999999999999999999999999999999999982 89
Q ss_pred EEecCCCCcc-ccHHHHHhcCCc-c------cHHHHHHHHHHhcchhHHhcCCCCCccccCCCCCCCCHHHHHHHHHHHH
Q psy1503 156 YASQEPWIFA-ATIRQNILFGLP-Y------LRRRYADVIRVCALQDDFDSLPNGDFTVVGERGASLSGGQKARINLARA 227 (265)
Q Consensus 156 ~v~Q~~~l~~-~ti~eni~~~~~-~------~~~~~~~~~~~~~l~~~i~~l~~g~~t~vg~~g~~LSgGqrqRialARa 227 (265)
.++-+..++. .|++|||.|... + .+.+..+..+..++.+.++ .+..+||-||||||+||||
T Consensus 79 Vl~~e~glY~RlT~rEnl~~Fa~L~~l~~~~~kari~~l~k~l~l~~~~~-----------rRv~~~S~G~kqkV~iARA 147 (245)
T COG4555 79 VLFGERGLYARLTARENLKYFARLNGLSRKEIKARIAELSKRLQLLEYLD-----------RRVGEFSTGMKQKVAIARA 147 (245)
T ss_pred eecCCcChhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhChHHHHH-----------HHHhhhchhhHHHHHHHHH
Confidence 9998888885 699999996422 1 1334445555555544433 4567899999999999999
Q ss_pred HccCCCEEEEeCCCCCcCHHHHHHHHHHHHHH
Q psy1503 228 VYKNADIYLLDDPLSAVDMHVGKHLFEDCISG 259 (265)
Q Consensus 228 l~~~~~illLDEp~s~LD~~~~~~i~~~~i~~ 259 (265)
|+++|++++|||||||||..+.+.+ ++.+..
T Consensus 148 lvh~P~i~vlDEP~sGLDi~~~r~~-~dfi~q 178 (245)
T COG4555 148 LVHDPSILVLDEPTSGLDIRTRRKF-HDFIKQ 178 (245)
T ss_pred HhcCCCeEEEcCCCCCccHHHHHHH-HHHHHH
Confidence 9999999999999999999998776 444433
No 267
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.9e-35 Score=284.26 Aligned_cols=159 Identities=20% Similarity=0.321 Sum_probs=129.0
Q ss_pred CcEEEEeEEEEeCCCCCCcceeeceEEEcCCcEEEEEcCCCChHHHHHHHHhcCcCCCccEEEEcC--------------
Q psy1503 87 GHVSLDNVTAQWSLQNADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSLGG-------------- 152 (265)
Q Consensus 87 ~~i~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g-------------- 152 (265)
..++++|++++|+. .++++|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|
T Consensus 4 ~~l~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 80 (510)
T PRK09700 4 PYISMAGIGKSFGP---VHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTITINNINYNKLDHKLAAQL 80 (510)
T ss_pred ceEEEeeeEEEcCC---eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCcCCCccEEEECCEECCCCCHHHHHHC
Confidence 36899999999953 4689999999999999999999999999999999999999999999987
Q ss_pred eEEEEecCCCCcc-ccHHHHHhcCCcc----------cH----HHHHHHHHHhcchhHHhcCCCCCccccCCCCCCCCHH
Q psy1503 153 TVSYASQEPWIFA-ATIRQNILFGLPY----------LR----RRYADVIRVCALQDDFDSLPNGDFTVVGERGASLSGG 217 (265)
Q Consensus 153 ~i~~v~Q~~~l~~-~ti~eni~~~~~~----------~~----~~~~~~~~~~~l~~~i~~l~~g~~t~vg~~g~~LSgG 217 (265)
.++|++|++.+++ .|++||+.++... +. ++..++++.+++. ........+||||
T Consensus 81 ~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~-----------~~~~~~~~~LSgG 149 (510)
T PRK09700 81 GIGIIYQELSVIDELTVLENLYIGRHLTKKVCGVNIIDWREMRVRAAMMLLRVGLK-----------VDLDEKVANLSIS 149 (510)
T ss_pred CeEEEeecccccCCCcHHHHhhhccccccccccccccCHHHHHHHHHHHHHHcCCC-----------CCcccchhhCCHH
Confidence 2899999998886 4999999875310 11 1122223333322 1234456799999
Q ss_pred HHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHH
Q psy1503 218 QKARINLARAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGC 260 (265)
Q Consensus 218 qrqRialARal~~~~~illLDEp~s~LD~~~~~~i~~~~i~~~ 260 (265)
||||++|||||+.+|+++||||||++||+.+...+++ .+..+
T Consensus 150 ~~qrv~ia~al~~~p~lllLDEPt~~LD~~~~~~l~~-~l~~l 191 (510)
T PRK09700 150 HKQMLEIAKTLMLDAKVIIMDEPTSSLTNKEVDYLFL-IMNQL 191 (510)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHH-HHHHH
Confidence 9999999999999999999999999999999998865 44443
No 268
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.5e-35 Score=283.42 Aligned_cols=159 Identities=20% Similarity=0.305 Sum_probs=129.1
Q ss_pred CcEEEEeEEEEeCCCCCCcceeeceEEEcCCcEEEEEcCCCChHHHHHHHHhcCcCC--CccEEEEcCe-----------
Q psy1503 87 GHVSLDNVTAQWSLQNADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRI--SSGKVSLGGT----------- 153 (265)
Q Consensus 87 ~~i~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~--~~G~i~~~g~----------- 153 (265)
.+++++|++++|+. .++|+|+||+|++|++++|+||||||||||+++|+|+++| ++|+|.++|.
T Consensus 4 ~~l~~~nl~~~~~~---~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~ 80 (506)
T PRK13549 4 YLLEMKNITKTFGG---VKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEIIFEGEELQASNIRDTE 80 (506)
T ss_pred ceEEEeeeEEEeCC---eEeecceeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHH
Confidence 36999999999953 4699999999999999999999999999999999999996 8999999872
Q ss_pred ---EEEEecCCCCcc-ccHHHHHhcCCcc------cHH----HHHHHHHHhcchhHHhcCCCCCccccCCCCCCCCHHHH
Q psy1503 154 ---VSYASQEPWIFA-ATIRQNILFGLPY------LRR----RYADVIRVCALQDDFDSLPNGDFTVVGERGASLSGGQK 219 (265)
Q Consensus 154 ---i~~v~Q~~~l~~-~ti~eni~~~~~~------~~~----~~~~~~~~~~l~~~i~~l~~g~~t~vg~~g~~LSgGqr 219 (265)
++|++|++.+++ .|++||+.++... ..+ +..++++..++ .........+||||||
T Consensus 81 ~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l-----------~~~~~~~~~~LSgGqk 149 (506)
T PRK13549 81 RAGIAIIHQELALVKELSVLENIFLGNEITPGGIMDYDAMYLRAQKLLAQLKL-----------DINPATPVGNLGLGQQ 149 (506)
T ss_pred HCCeEEEEeccccCCCCcHHHHhhhcccccccCCcCHHHHHHHHHHHHHHcCC-----------CCCcccchhhCCHHHH
Confidence 899999998886 5999999876421 111 12222222222 1223455678999999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHH
Q psy1503 220 ARINLARAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGC 260 (265)
Q Consensus 220 qRialARal~~~~~illLDEp~s~LD~~~~~~i~~~~i~~~ 260 (265)
||++|||||+.+|+++||||||++||+.+...+++ .+..+
T Consensus 150 qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~-~l~~l 189 (506)
T PRK13549 150 QLVEIAKALNKQARLLILDEPTASLTESETAVLLD-IIRDL 189 (506)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHH-HHHHH
Confidence 99999999999999999999999999999998865 44444
No 269
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6.4e-35 Score=267.77 Aligned_cols=164 Identities=16% Similarity=0.336 Sum_probs=128.1
Q ss_pred cEEEEeEEEEeCCCC-CCcceeeceEEEcCCcEEEEEcCCCChHHHHHHHHhcCcC----CCccEEEEcCe---------
Q psy1503 88 HVSLDNVTAQWSLQN-ADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELR----ISSGKVSLGGT--------- 153 (265)
Q Consensus 88 ~i~~~~~~~~~~~~~-~~~~l~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~----~~~G~i~~~g~--------- 153 (265)
.|+++|++++|+... ...+++|+||+|++||+++|+|+||||||||+++|+|+.+ |++|+|.++|.
T Consensus 3 ~L~v~~l~~~y~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i~~~g~~i~~~~~~~ 82 (330)
T PRK15093 3 LLDIRNLTIEFKTSDGWVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFDDIDLLRLSPRE 82 (330)
T ss_pred eEEEeeeEEEEeCCCCCEEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHHccCCCCCCCcceEEEECCEECCcCCHHH
Confidence 589999999995321 2468999999999999999999999999999999999986 58999999872
Q ss_pred --------EEEEecCCC--Ccc-ccHHHHHhcCC---cc----------cHHHHHHHHHHhcchhHHhcCCCCCccccCC
Q psy1503 154 --------VSYASQEPW--IFA-ATIRQNILFGL---PY----------LRRRYADVIRVCALQDDFDSLPNGDFTVVGE 209 (265)
Q Consensus 154 --------i~~v~Q~~~--l~~-~ti~eni~~~~---~~----------~~~~~~~~~~~~~l~~~i~~l~~g~~t~vg~ 209 (265)
|+|++|++. +++ .|+.+|+.... .. ..++..++++..++.+.. .....
T Consensus 83 ~~~~~~~~i~~v~Q~~~~~l~p~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~--------~~~~~ 154 (330)
T PRK15093 83 RRKLVGHNVSMIFQEPQSCLDPSERVGRQLMQNIPGWTYKGRWWQRFGWRKRRAIELLHRVGIKDHK--------DAMRS 154 (330)
T ss_pred HHHHhCCCEEEEecCcchhcCccccHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHCCCCChH--------HHHhC
Confidence 899999986 344 58999986421 00 112334455555554211 01234
Q ss_pred CCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHH
Q psy1503 210 RGASLSGGQKARINLARAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGC 260 (265)
Q Consensus 210 ~g~~LSgGqrqRialARal~~~~~illLDEp~s~LD~~~~~~i~~~~i~~~ 260 (265)
...+|||||||||+|||||+.+|+++||||||++||+.+..++++ .+..+
T Consensus 155 ~p~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~-lL~~l 204 (330)
T PRK15093 155 FPYELTEGECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFR-LLTRL 204 (330)
T ss_pred CchhCCHHHHHHHHHHHHHHCCCCEEEEeCCCCcCCHHHHHHHHH-HHHHH
Confidence 457999999999999999999999999999999999999998865 44443
No 270
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=100.00 E-value=7.4e-35 Score=257.40 Aligned_cols=163 Identities=20% Similarity=0.306 Sum_probs=125.1
Q ss_pred cEEEEeEEEEeCCCCCCcceeeceEEEcCCcEEEEEcCCCChHHHHHHHHhcCcCCCccEEEEcC---------------
Q psy1503 88 HVSLDNVTAQWSLQNADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSLGG--------------- 152 (265)
Q Consensus 88 ~i~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g--------------- 152 (265)
.++++|++++|+. ..+++|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|
T Consensus 3 ~l~~~~l~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 79 (253)
T TIGR02323 3 LLQVSGLSKSYGG---GKGCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPDHGTATYIMRSGAELELYQLSEAE 79 (253)
T ss_pred eEEEeeeEEEeCC---ceEeecceEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEEecccccccccccCCHHH
Confidence 6899999999963 4589999999999999999999999999999999999999999999875
Q ss_pred -------eEEEEecCCC--Cc-cccHHHHHhcCC---c-ccHHHHHHHHHHhcchhHHhcCCCCCccccCCCCCCCCHHH
Q psy1503 153 -------TVSYASQEPW--IF-AATIRQNILFGL---P-YLRRRYADVIRVCALQDDFDSLPNGDFTVVGERGASLSGGQ 218 (265)
Q Consensus 153 -------~i~~v~Q~~~--l~-~~ti~eni~~~~---~-~~~~~~~~~~~~~~l~~~i~~l~~g~~t~vg~~g~~LSgGq 218 (265)
.++|++|++. ++ ..|+.+|+.+.. . ....... ..+.+.++.+... .+........|||||
T Consensus 80 ~~~~~~~~i~~~~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~-----~~~~~~l~~l~l~-~~~~~~~~~~LSgG~ 153 (253)
T TIGR02323 80 RRRLMRTEWGFVHQNPRDGLRMRVSAGANIGERLMAIGARHYGNIR-----AAAHDWLEEVEID-PTRIDDLPRAFSGGM 153 (253)
T ss_pred HHHhhhcceEEEEeCcccccCccccHHHHHHHHHHHhcccchHHHH-----HHHHHHHHHcCCC-hhhhhcCchhcCHHH
Confidence 1799999984 33 348888885321 0 0110000 1112233333211 123456678999999
Q ss_pred HHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHH
Q psy1503 219 KARINLARAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGC 260 (265)
Q Consensus 219 rqRialARal~~~~~illLDEp~s~LD~~~~~~i~~~~i~~~ 260 (265)
|||++|||||+.+|+++||||||++||+.+.+.+++ ++..+
T Consensus 154 ~qrv~laral~~~p~vlllDEP~~~LD~~~~~~l~~-~l~~~ 194 (253)
T TIGR02323 154 QQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLD-LLRGL 194 (253)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHH-HHHHH
Confidence 999999999999999999999999999999988865 44343
No 271
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=100.00 E-value=1e-34 Score=256.17 Aligned_cols=160 Identities=18% Similarity=0.295 Sum_probs=126.3
Q ss_pred CcEEEEeEEEEeCCCCCCcceeeceEEEcCCcEEEEEcCCCChHHHHHHHHhcC--cCCCccEEEEcCe-----------
Q psy1503 87 GHVSLDNVTAQWSLQNADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNE--LRISSGKVSLGGT----------- 153 (265)
Q Consensus 87 ~~i~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~g~--~~~~~G~i~~~g~----------- 153 (265)
..++++|++++|+. ..+|+++||+|++|++++|+|+||||||||+++|+|+ ++|++|+|.++|.
T Consensus 6 ~~l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~ 82 (252)
T CHL00131 6 PILEIKNLHASVNE---NEILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKILEGDILFKGESILDLEPEERA 82 (252)
T ss_pred ceEEEEeEEEEeCC---EEeeecceeEEcCCcEEEEECCCCCCHHHHHHHHcCCCcCcCCCceEEECCEEcccCChhhhh
Confidence 36999999999963 4689999999999999999999999999999999998 6899999999872
Q ss_pred ---EEEEecCCCCccc-cHHHHHhcCCcc----------c----HHHHHHHHHHhcchhHHhcCCCCCccccCCCCC-CC
Q psy1503 154 ---VSYASQEPWIFAA-TIRQNILFGLPY----------L----RRRYADVIRVCALQDDFDSLPNGDFTVVGERGA-SL 214 (265)
Q Consensus 154 ---i~~v~Q~~~l~~~-ti~eni~~~~~~----------~----~~~~~~~~~~~~l~~~i~~l~~g~~t~vg~~g~-~L 214 (265)
++|++|++.+++. |+.+|+.+.... . .+++.++++.+++.+ +....... .|
T Consensus 83 ~~~~~~~~q~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~----------~~~~~~~~~~L 152 (252)
T CHL00131 83 HLGIFLAFQYPIEIPGVSNADFLRLAYNSKRKFQGLPELDPLEFLEIINEKLKLVGMDP----------SFLSRNVNEGF 152 (252)
T ss_pred eeeEEEEeccccccccccHHHHHHHhhhhhhcccccccccHHHHHHHHHHHHHHcCCch----------hhhccccccCC
Confidence 7789999998875 899998754210 0 011223333333321 12233344 59
Q ss_pred CHHHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHH
Q psy1503 215 SGGQKARINLARAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGC 260 (265)
Q Consensus 215 SgGqrqRialARal~~~~~illLDEp~s~LD~~~~~~i~~~~i~~~ 260 (265)
|||||||++|||||+++|+++||||||++||..+...+++ .+..+
T Consensus 153 SgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~-~l~~~ 197 (252)
T CHL00131 153 SGGEKKRNEILQMALLDSELAILDETDSGLDIDALKIIAE-GINKL 197 (252)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHH-HHHHH
Confidence 9999999999999999999999999999999999998865 44444
No 272
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.1e-35 Score=281.99 Aligned_cols=158 Identities=23% Similarity=0.346 Sum_probs=129.1
Q ss_pred cEEEEeEEEEeCCCCCCcceeeceEEEcCCcEEEEEcCCCChHHHHHHHHhcCcCCCccEEEEcC--------------e
Q psy1503 88 HVSLDNVTAQWSLQNADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSLGG--------------T 153 (265)
Q Consensus 88 ~i~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g--------------~ 153 (265)
.++++|++++|++ .++|+|+||++++|++++|+||||||||||+++|+|+++|++|+|.++| .
T Consensus 4 ~l~~~~l~~~~~~---~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~ 80 (501)
T PRK11288 4 YLSFDGIGKTFPG---VKALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPDAGSILIDGQEMRFASTTAALAAG 80 (501)
T ss_pred eEEEeeeEEEECC---EEEEeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHhCC
Confidence 6899999999963 4689999999999999999999999999999999999999999999976 2
Q ss_pred EEEEecCCCCcc-ccHHHHHhcCCc------ccH----HHHHHHHHHhcchhHHhcCCCCCccccCCCCCCCCHHHHHHH
Q psy1503 154 VSYASQEPWIFA-ATIRQNILFGLP------YLR----RRYADVIRVCALQDDFDSLPNGDFTVVGERGASLSGGQKARI 222 (265)
Q Consensus 154 i~~v~Q~~~l~~-~ti~eni~~~~~------~~~----~~~~~~~~~~~l~~~i~~l~~g~~t~vg~~g~~LSgGqrqRi 222 (265)
++|++|++.+++ .|+.||+.++.. ... ++..++++.+++. ........+||||||||+
T Consensus 81 i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-----------~~~~~~~~~LSgGq~qrv 149 (501)
T PRK11288 81 VAIIYQELHLVPEMTVAENLYLGQLPHKGGIVNRRLLNYEAREQLEHLGVD-----------IDPDTPLKYLSIGQRQMV 149 (501)
T ss_pred EEEEEechhccCCCCHHHHHHhcccccccCCCCHHHHHHHHHHHHHHcCCC-----------CCcCCchhhCCHHHHHHH
Confidence 899999998887 499999987531 111 1222333333332 122345678999999999
Q ss_pred HHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHH
Q psy1503 223 NLARAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGC 260 (265)
Q Consensus 223 alARal~~~~~illLDEp~s~LD~~~~~~i~~~~i~~~ 260 (265)
+|||||+.+|+++||||||++||+.+.+.+++ .+..+
T Consensus 150 ~laral~~~p~lllLDEPt~~LD~~~~~~l~~-~l~~~ 186 (501)
T PRK11288 150 EIAKALARNARVIAFDEPTSSLSAREIEQLFR-VIREL 186 (501)
T ss_pred HHHHHHHhCCCEEEEcCCCCCCCHHHHHHHHH-HHHHH
Confidence 99999999999999999999999999998865 44333
No 273
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=100.00 E-value=4.6e-35 Score=256.62 Aligned_cols=145 Identities=22% Similarity=0.336 Sum_probs=115.4
Q ss_pred CcceeeceEEEcCCcEEEEEcCCCChHHHHHHHHhcCcCCCccEEEEcCe------------EEEEe-cCCCCcc-ccHH
Q psy1503 104 DLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSLGGT------------VSYAS-QEPWIFA-ATIR 169 (265)
Q Consensus 104 ~~~l~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g~------------i~~v~-Q~~~l~~-~ti~ 169 (265)
+++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|. ++|++ |++.++. .|++
T Consensus 34 ~~il~~vs~~i~~Ge~~~i~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~tv~ 113 (236)
T cd03267 34 VEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGEVRVAGLVPWKRRKKFLRRIGVVFGQKTQLWWDLPVI 113 (236)
T ss_pred eeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEccccchhhcccEEEEcCCccccCCCCcHH
Confidence 46899999999999999999999999999999999999999999999873 78997 5566764 6999
Q ss_pred HHHhcCCc---ccHH----HHHHHHHHhcchhHHhcCCCCCccccCCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCC
Q psy1503 170 QNILFGLP---YLRR----RYADVIRVCALQDDFDSLPNGDFTVVGERGASLSGGQKARINLARAVYKNADIYLLDDPLS 242 (265)
Q Consensus 170 eni~~~~~---~~~~----~~~~~~~~~~l~~~i~~l~~g~~t~vg~~g~~LSgGqrqRialARal~~~~~illLDEp~s 242 (265)
||+.+... ...+ ...++++.+++.+. .......||||||||++|||||+.+|+++||||||+
T Consensus 114 e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~-----------~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~ 182 (236)
T cd03267 114 DSFYLLAAIYDLPPARFKKRLDELSELLDLEEL-----------LDTPVRQLSLGQRMRAEIAAALLHEPEILFLDEPTI 182 (236)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhH-----------hcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCC
Confidence 99876421 1111 22233333333322 223456899999999999999999999999999999
Q ss_pred CcCHHHHHHHHHHHHHHH
Q psy1503 243 AVDMHVGKHLFEDCISGC 260 (265)
Q Consensus 243 ~LD~~~~~~i~~~~i~~~ 260 (265)
+||+.+.+.+.+ .+..+
T Consensus 183 ~LD~~~~~~l~~-~l~~~ 199 (236)
T cd03267 183 GLDVVAQENIRN-FLKEY 199 (236)
T ss_pred CCCHHHHHHHHH-HHHHH
Confidence 999999998865 44444
No 274
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=100.00 E-value=4.1e-35 Score=256.00 Aligned_cols=143 Identities=29% Similarity=0.426 Sum_probs=116.6
Q ss_pred eeeceEEEcCCcEEEEEcCCCChHHHHHHHHhcCcCCCccEEEEcCe--------EEEEecCCCCcc-ccHHHHHhcCC-
Q psy1503 107 LNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSLGGT--------VSYASQEPWIFA-ATIRQNILFGL- 176 (265)
Q Consensus 107 l~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g~--------i~~v~Q~~~l~~-~ti~eni~~~~- 176 (265)
++++||+|++|++++|+||||||||||+++|+|+++|++|+|.++|. .+|++|++.+|+ .|+.||+.++.
T Consensus 1 l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~v~q~~~l~~~~tv~e~l~~~~~ 80 (230)
T TIGR01184 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQITEPGPDRMVVFQNYSLLPWLTVRENIALAVD 80 (230)
T ss_pred CCceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhheEEecCcccCCCCCHHHHHHHHHH
Confidence 57899999999999999999999999999999999999999999884 589999999887 69999998642
Q ss_pred ----cccH----HHHHHHHHHhcchhHHhcCCCCCccccCCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCcCHHH
Q psy1503 177 ----PYLR----RRYADVIRVCALQDDFDSLPNGDFTVVGERGASLSGGQKARINLARAVYKNADIYLLDDPLSAVDMHV 248 (265)
Q Consensus 177 ----~~~~----~~~~~~~~~~~l~~~i~~l~~g~~t~vg~~g~~LSgGqrqRialARal~~~~~illLDEp~s~LD~~~ 248 (265)
.... ++..+.++.+++.+.. .....+||||||||++|||||+.+|+++||||||++||+.+
T Consensus 81 ~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~ 149 (230)
T TIGR01184 81 RVLPDLSKSERRAIVEEHIALVGLTEAA-----------DKRPGQLSGGMKQRVAIARALSIRPKVLLLDEPFGALDALT 149 (230)
T ss_pred hcccCCCHHHHHHHHHHHHHHcCCHHHH-----------cCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCCHHH
Confidence 1111 1233444444444322 34457899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHh
Q psy1503 249 GKHLFEDCISGCL 261 (265)
Q Consensus 249 ~~~i~~~~i~~~l 261 (265)
...+.+ .+..+.
T Consensus 150 ~~~l~~-~l~~~~ 161 (230)
T TIGR01184 150 RGNLQE-ELMQIW 161 (230)
T ss_pred HHHHHH-HHHHHH
Confidence 998865 444443
No 275
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=100.00 E-value=1.1e-34 Score=258.85 Aligned_cols=163 Identities=25% Similarity=0.407 Sum_probs=127.7
Q ss_pred cEEEEeEEEEeCCC------CCCcceeeceEEEcCCcEEEEEcCCCChHHHHHHHHhcCcCCCccEEEEcCe--------
Q psy1503 88 HVSLDNVTAQWSLQ------NADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSLGGT-------- 153 (265)
Q Consensus 88 ~i~~~~~~~~~~~~------~~~~~l~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g~-------- 153 (265)
.|+++|+++.|+.. ..+++++|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.
T Consensus 3 ~l~~~nl~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~sG~i~~~g~~~~~~~~~ 82 (268)
T PRK10419 3 LLNVSGLSHHYAHGGLSGKHQHQTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQGNVSWRGEPLAKLNRA 82 (268)
T ss_pred eEEEeceEEEecCCccccccCceeeEeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEeccccChh
Confidence 58999999999631 1256999999999999999999999999999999999999999999999873
Q ss_pred --------EEEEecCCC--Ccc-ccHHHHHhcCCc----ccH----HHHHHHHHHhcchhHHhcCCCCCccccCCCCCCC
Q psy1503 154 --------VSYASQEPW--IFA-ATIRQNILFGLP----YLR----RRYADVIRVCALQDDFDSLPNGDFTVVGERGASL 214 (265)
Q Consensus 154 --------i~~v~Q~~~--l~~-~ti~eni~~~~~----~~~----~~~~~~~~~~~l~~~i~~l~~g~~t~vg~~g~~L 214 (265)
++|++|++. +++ .|+.+|+.+... .+. .+..++++.+++.. ......+..|
T Consensus 83 ~~~~~~~~i~~v~q~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~----------~~~~~~~~~L 152 (268)
T PRK10419 83 QRKAFRRDIQMVFQDSISAVNPRKTVREIIREPLRHLLSLDKAERLARASEMLRAVDLDD----------SVLDKRPPQL 152 (268)
T ss_pred HHHHHHhcEEEEEcChhhccCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHHHHHcCCCh----------hHhhCCCccC
Confidence 899999983 443 699999864211 111 12233333333321 1234566799
Q ss_pred CHHHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHHh
Q psy1503 215 SGGQKARINLARAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGCL 261 (265)
Q Consensus 215 SgGqrqRialARal~~~~~illLDEp~s~LD~~~~~~i~~~~i~~~l 261 (265)
|||||||++|||||+.+|+++||||||++||+.+...+++ ++..+.
T Consensus 153 S~Ge~qrl~laral~~~p~lllLDEPt~~LD~~~~~~~~~-~l~~~~ 198 (268)
T PRK10419 153 SGGQLQRVCLARALAVEPKLLILDEAVSNLDLVLQAGVIR-LLKKLQ 198 (268)
T ss_pred ChHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHH-HHHHHH
Confidence 9999999999999999999999999999999999888755 444443
No 276
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=100.00 E-value=9.1e-35 Score=266.71 Aligned_cols=165 Identities=16% Similarity=0.332 Sum_probs=128.9
Q ss_pred CcEEEEeEEEEeCCCC-CCcceeeceEEEcCCcEEEEEcCCCChHHHHHHHHhcCcCCC---ccEEEEcCe---------
Q psy1503 87 GHVSLDNVTAQWSLQN-ADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRIS---SGKVSLGGT--------- 153 (265)
Q Consensus 87 ~~i~~~~~~~~~~~~~-~~~~l~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~---~G~i~~~g~--------- 153 (265)
..++++|++++|+... ...+++|+||+|++||+++|+|+||||||||+++|+|+++|+ +|+|.++|.
T Consensus 11 ~~L~i~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~p~~~~sG~I~~~G~~i~~~~~~~ 90 (330)
T PRK09473 11 ALLDVKDLRVTFSTPDGDVTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGREILNLPEKE 90 (330)
T ss_pred ceEEEeCeEEEEecCCCCEEEEeeeEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCCCeEEEECCEECCcCCHHH
Confidence 4699999999996321 246899999999999999999999999999999999999996 999999872
Q ss_pred --------EEEEecCC--CCcc-ccHHHHHhcCC----cccH----HHHHHHHHHhcchhHHhcCCCCCccccCCCCCCC
Q psy1503 154 --------VSYASQEP--WIFA-ATIRQNILFGL----PYLR----RRYADVIRVCALQDDFDSLPNGDFTVVGERGASL 214 (265)
Q Consensus 154 --------i~~v~Q~~--~l~~-~ti~eni~~~~----~~~~----~~~~~~~~~~~l~~~i~~l~~g~~t~vg~~g~~L 214 (265)
|+|++|++ .+++ .|+.+|+.... .... ++..+.++..++ ++.. ..++..+.+|
T Consensus 91 ~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~L~~vgL-------~~~~-~~~~~~p~~L 162 (330)
T PRK09473 91 LNKLRAEQISMIFQDPMTSLNPYMRVGEQLMEVLMLHKGMSKAEAFEESVRMLDAVKM-------PEAR-KRMKMYPHEF 162 (330)
T ss_pred HHHHhcCCEEEEEcCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCC-------CChH-HHhcCCcccC
Confidence 89999998 4555 48888875321 1111 122233333332 2221 2245677899
Q ss_pred CHHHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHH
Q psy1503 215 SGGQKARINLARAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGC 260 (265)
Q Consensus 215 SgGqrqRialARal~~~~~illLDEp~s~LD~~~~~~i~~~~i~~~ 260 (265)
|||||||++|||||+.+|+++|+||||++||..++..|++ .+..+
T Consensus 163 SgG~~QRv~IArAL~~~P~llilDEPts~LD~~~~~~i~~-lL~~l 207 (330)
T PRK09473 163 SGGMRQRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMT-LLNEL 207 (330)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHH-HHHHH
Confidence 9999999999999999999999999999999999999866 44444
No 277
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=100.00 E-value=8.4e-35 Score=253.20 Aligned_cols=153 Identities=25% Similarity=0.258 Sum_probs=119.9
Q ss_pred EEEEeEEEEeCCCCCCcceeeceEEEcCCcEEEEEcCCCChHHHHHHHHhcCcCCCccEEEEcCeEEEEec-CCCCc-cc
Q psy1503 89 VSLDNVTAQWSLQNADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSLGGTVSYASQ-EPWIF-AA 166 (265)
Q Consensus 89 i~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g~i~~v~Q-~~~l~-~~ 166 (265)
+.++++++.|+. +++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|...+..+ ...++ +.
T Consensus 23 l~~~~~~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~~ 99 (224)
T cd03220 23 LGILGRKGEVGE---FWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPPDSGTVTVRGRVSSLLGLGGGFNPEL 99 (224)
T ss_pred hhhhhhhhhcCC---eEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEchhhcccccCCCCC
Confidence 677888888853 56999999999999999999999999999999999999999999999997544333 34444 46
Q ss_pred cHHHHHhcCCcc---cH----HHHHHHHHHhcchhHHhcCCCCCccccCCCCCCCCHHHHHHHHHHHHHccCCCEEEEeC
Q psy1503 167 TIRQNILFGLPY---LR----RRYADVIRVCALQDDFDSLPNGDFTVVGERGASLSGGQKARINLARAVYKNADIYLLDD 239 (265)
Q Consensus 167 ti~eni~~~~~~---~~----~~~~~~~~~~~l~~~i~~l~~g~~t~vg~~g~~LSgGqrqRialARal~~~~~illLDE 239 (265)
|++||+.++... .. ++..++++..++.+. ......+||||||||++||||++++|+++||||
T Consensus 100 tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LSgG~~qrv~laral~~~p~llllDE 168 (224)
T cd03220 100 TGRENIYLNGRLLGLSRKEIDEKIDEIIEFSELGDF-----------IDLPVKTYSSGMKARLAFAIATALEPDILLIDE 168 (224)
T ss_pred cHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhh-----------hhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 999999864321 11 122233333333222 233456899999999999999999999999999
Q ss_pred CCCCcCHHHHHHHHHH
Q psy1503 240 PLSAVDMHVGKHLFED 255 (265)
Q Consensus 240 p~s~LD~~~~~~i~~~ 255 (265)
||++||+.+.+.+++.
T Consensus 169 P~~gLD~~~~~~~~~~ 184 (224)
T cd03220 169 VLAVGDAAFQEKCQRR 184 (224)
T ss_pred CcccCCHHHHHHHHHH
Confidence 9999999999888663
No 278
>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=100.00 E-value=6.3e-35 Score=239.68 Aligned_cols=159 Identities=25% Similarity=0.375 Sum_probs=135.6
Q ss_pred cEEEEeEEEEeCCCC-CCcceeeceEEEcCCcEEEEEcCCCChHHHHHHHHhcCcCCCccEEEEcCe-------------
Q psy1503 88 HVSLDNVTAQWSLQN-ADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSLGGT------------- 153 (265)
Q Consensus 88 ~i~~~~~~~~~~~~~-~~~~l~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g~------------- 153 (265)
.|+++++++..+... .-.+|++|+|.|++||.++||||||||||||+-++.|+-.|++|+|.+.|+
T Consensus 6 ii~~~~l~ktvg~~~~~l~IL~~V~L~v~~Ge~vaiVG~SGSGKSTLl~vlAGLd~~ssGeV~l~G~~L~~ldEd~rA~~ 85 (228)
T COG4181 6 IIEVHHLSKTVGQGEGELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPSSGEVRLLGQPLHKLDEDARAAL 85 (228)
T ss_pred eeehhhhhhhhcCCCcceeEeecceEEecCCceEEEEcCCCCcHHhHHHHHhcCCCCCCceEEEcCcchhhcCHHHHHHh
Confidence 578888888775432 245899999999999999999999999999999999999999999999873
Q ss_pred ----EEEEecCCCCcc-ccHHHHHhcCCcc-------cHHHHHHHHHHhcchhHHhcCCCCCccccCCCCCCCCHHHHHH
Q psy1503 154 ----VSYASQEPWIFA-ATIRQNILFGLPY-------LRRRYADVIRVCALQDDFDSLPNGDFTVVGERGASLSGGQKAR 221 (265)
Q Consensus 154 ----i~~v~Q~~~l~~-~ti~eni~~~~~~-------~~~~~~~~~~~~~l~~~i~~l~~g~~t~vg~~g~~LSgGqrqR 221 (265)
+|+|+|...|.+ .|..||+...... ......+.+++.+|.+.+..+| .+||||++||
T Consensus 86 R~~~vGfVFQSF~Lip~ltAlENV~lPleL~ge~~~~~~~~A~~lL~~vGLg~Rl~HyP-----------~qLSGGEQQR 154 (228)
T COG4181 86 RARHVGFVFQSFHLIPNLTALENVALPLELRGESSADSRAGAKALLEAVGLGKRLTHYP-----------AQLSGGEQQR 154 (228)
T ss_pred hccceeEEEEeeeccccchhhhhccchhhhcCCccccHHHHHHHHHHHhCcccccccCc-----------cccCchHHHH
Confidence 999999999885 6999999875321 1233455677777777666665 5899999999
Q ss_pred HHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHH
Q psy1503 222 INLARAVYKNADIYLLDDPLSAVDMHVGKHLFEDCI 257 (265)
Q Consensus 222 ialARal~~~~~illLDEp~s~LD~~~~~~i~~~~i 257 (265)
||||||+...|+|++.||||-+||..|..+|.+-.+
T Consensus 155 VAiARAfa~~P~vLfADEPTGNLD~~Tg~~iaDLlF 190 (228)
T COG4181 155 VALARAFAGRPDVLFADEPTGNLDRATGDKIADLLF 190 (228)
T ss_pred HHHHHHhcCCCCEEeccCCCCCcchhHHHHHHHHHH
Confidence 999999999999999999999999999999987665
No 279
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=100.00 E-value=1.7e-34 Score=247.04 Aligned_cols=133 Identities=21% Similarity=0.358 Sum_probs=114.7
Q ss_pred EEEEeEEEEeCCCCCCcceeeceEEEcCCcEEEEEcCCCChHHHHHHHHhcC--cCCCccEEEEcCe-------------
Q psy1503 89 VSLDNVTAQWSLQNADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNE--LRISSGKVSLGGT------------- 153 (265)
Q Consensus 89 i~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~g~--~~~~~G~i~~~g~------------- 153 (265)
++++|++++|++ .++++|+||++++|++++|+||||||||||+++|+|+ ++|++|+|.++|.
T Consensus 1 l~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~p~~G~i~~~g~~~~~~~~~~~~~~ 77 (200)
T cd03217 1 LEIKDLHVSVGG---KEILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGEDITDLPPEERARL 77 (200)
T ss_pred CeEEEEEEEeCC---EEeeeccceEECCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCccEEEECCEECCcCCHHHHhhC
Confidence 468999999963 4699999999999999999999999999999999999 5899999999872
Q ss_pred -EEEEecCCCCccc-cHHHHHhcCCcccHHHHHHHHHHhcchhHHhcCCCCCccccCCCCCCCCHHHHHHHHHHHHHccC
Q psy1503 154 -VSYASQEPWIFAA-TIRQNILFGLPYLRRRYADVIRVCALQDDFDSLPNGDFTVVGERGASLSGGQKARINLARAVYKN 231 (265)
Q Consensus 154 -i~~v~Q~~~l~~~-ti~eni~~~~~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~vg~~g~~LSgGqrqRialARal~~~ 231 (265)
++|++|++.++++ ++++|+ .. ...+||||||||++||||++.+
T Consensus 78 ~i~~v~q~~~~~~~~~~~~~l------------------------~~-----------~~~~LS~G~~qrv~laral~~~ 122 (200)
T cd03217 78 GIFLAFQYPPEIPGVKNADFL------------------------RY-----------VNEGFSGGEKKRNEILQLLLLE 122 (200)
T ss_pred cEEEeecChhhccCccHHHHH------------------------hh-----------ccccCCHHHHHHHHHHHHHhcC
Confidence 8999999988875 555554 00 1147999999999999999999
Q ss_pred CCEEEEeCCCCCcCHHHHHHHHHHHHHHH
Q psy1503 232 ADIYLLDDPLSAVDMHVGKHLFEDCISGC 260 (265)
Q Consensus 232 ~~illLDEp~s~LD~~~~~~i~~~~i~~~ 260 (265)
|+++||||||++||+.+...+++ ++..+
T Consensus 123 p~illlDEPt~~LD~~~~~~l~~-~L~~~ 150 (200)
T cd03217 123 PDLAILDEPDSGLDIDALRLVAE-VINKL 150 (200)
T ss_pred CCEEEEeCCCccCCHHHHHHHHH-HHHHH
Confidence 99999999999999999988855 44444
No 280
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2e-34 Score=284.45 Aligned_cols=166 Identities=17% Similarity=0.285 Sum_probs=131.3
Q ss_pred CcEEEEeEEEEeCCCC-CCcceeeceEEEcCCcEEEEEcCCCChHHHHHHHHhcCcCCCccEEEEcC-------------
Q psy1503 87 GHVSLDNVTAQWSLQN-ADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSLGG------------- 152 (265)
Q Consensus 87 ~~i~~~~~~~~~~~~~-~~~~l~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g------------- 152 (265)
..|+++|++++|+... ..++++||||++++|++++|+||||||||||+++|+|+++|++|+|.++|
T Consensus 11 ~~l~v~~l~~~y~~~~~~~~~l~~is~~v~~Ge~~~lvG~nGsGKSTLl~~l~Gll~p~~G~i~~~g~~~~~~~~~~~~~ 90 (623)
T PRK10261 11 DVLAVENLNIAFMQEQQKIAAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLEQAGGLVQCDKMLLRRRSRQVIEL 90 (623)
T ss_pred ceEEEeceEEEecCCCCceeEEEeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCeEEEECCEEecccccccccc
Confidence 4799999999996321 24699999999999999999999999999999999999999999998754
Q ss_pred --------------eEEEEecCC--CCcc-ccHHHHHhcCCc----ccH----HHHHHHHHHhcchhHHhcCCCCCcccc
Q psy1503 153 --------------TVSYASQEP--WIFA-ATIRQNILFGLP----YLR----RRYADVIRVCALQDDFDSLPNGDFTVV 207 (265)
Q Consensus 153 --------------~i~~v~Q~~--~l~~-~ti~eni~~~~~----~~~----~~~~~~~~~~~l~~~i~~l~~g~~t~v 207 (265)
.|+||+|+| .+++ .||.||+.++.. ... ++..++++..++.+. ....
T Consensus 91 ~~~~~~~~~~~r~~~ig~v~Q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~--------~~~~ 162 (623)
T PRK10261 91 SEQSAAQMRHVRGADMAMIFQEPMTSLNPVFTVGEQIAESIRLHQGASREEAMVEAKRMLDQVRIPEA--------QTIL 162 (623)
T ss_pred ccCCHHHHHHHhCCCEEEEEeCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCCh--------hhHH
Confidence 389999998 5676 599999987521 111 233344444444210 1123
Q ss_pred CCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHHh
Q psy1503 208 GERGASLSGGQKARINLARAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGCL 261 (265)
Q Consensus 208 g~~g~~LSgGqrqRialARal~~~~~illLDEp~s~LD~~~~~~i~~~~i~~~l 261 (265)
.....+|||||||||+|||||+.+|++|||||||++||+.+.+.+++ .+..+-
T Consensus 163 ~~~~~~LSgGq~QRv~iA~AL~~~P~lLllDEPt~~LD~~~~~~l~~-ll~~l~ 215 (623)
T PRK10261 163 SRYPHQLSGGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQ-LIKVLQ 215 (623)
T ss_pred hCCCccCCHHHHHHHHHHHHHhCCCCEEEEeCCCCccCHHHHHHHHH-HHHHHH
Confidence 34567999999999999999999999999999999999999988865 454443
No 281
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.2e-34 Score=279.39 Aligned_cols=163 Identities=26% Similarity=0.357 Sum_probs=125.4
Q ss_pred cEEEEeEEEEeCCCCCCcceeeceEEEcCCcEEEEEcCCCChHHHHHHHHhcCcCCCccEEEEcC--eEEEEecCCCCcc
Q psy1503 88 HVSLDNVTAQWSLQNADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSLGG--TVSYASQEPWIFA 165 (265)
Q Consensus 88 ~i~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g--~i~~v~Q~~~l~~ 165 (265)
+|+++|++++|+. .++++|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++| .++|++|++.+++
T Consensus 1 ml~i~~ls~~~~~---~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~~~i~~~~q~~~~~~ 77 (530)
T PRK15064 1 MLSTANITMQFGA---KPLFENISVKFGGGNRYGLIGANGCGKSTFMKILGGDLEPSAGNVSLDPNERLGKLRQDQFAFE 77 (530)
T ss_pred CEEEEEEEEEeCC---cEeEeCCEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCCEEEEEeccCCcCC
Confidence 3789999999963 4699999999999999999999999999999999999999999999986 5999999998875
Q ss_pred -ccHHHHHhcCCcccHH--------------------HHHHHH----------HHhcchhHHhcCCCCCcccc-CCCCCC
Q psy1503 166 -ATIRQNILFGLPYLRR--------------------RYADVI----------RVCALQDDFDSLPNGDFTVV-GERGAS 213 (265)
Q Consensus 166 -~ti~eni~~~~~~~~~--------------------~~~~~~----------~~~~l~~~i~~l~~g~~t~v-g~~g~~ 213 (265)
.|++||+.++...... .+.+.. ........++.+ |..... .....+
T Consensus 78 ~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--gl~~~~~~~~~~~ 155 (530)
T PRK15064 78 EFTVLDTVIMGHTELWEVKQERDRIYALPEMSEEDGMKVADLEVKFAEMDGYTAEARAGELLLGV--GIPEEQHYGLMSE 155 (530)
T ss_pred CCcHHHHHHHhhHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHHhcCchhHHHHHHHHHHhC--CCChhHhcCchhh
Confidence 5999999875310000 000000 000111222222 121111 234678
Q ss_pred CCHHHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHH
Q psy1503 214 LSGGQKARINLARAVYKNADIYLLDDPLSAVDMHVGKHLFED 255 (265)
Q Consensus 214 LSgGqrqRialARal~~~~~illLDEp~s~LD~~~~~~i~~~ 255 (265)
||||||||++|||||+.+|+++||||||++||+.+...+.+.
T Consensus 156 LSgGq~qrv~lA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~ 197 (530)
T PRK15064 156 VAPGWKLRVLLAQALFSNPDILLLDEPTNNLDINTIRWLEDV 197 (530)
T ss_pred cCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHH
Confidence 999999999999999999999999999999999999888654
No 282
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=100.00 E-value=3.1e-34 Score=255.68 Aligned_cols=158 Identities=23% Similarity=0.365 Sum_probs=127.2
Q ss_pred cEEEEeEEEEeCCC-----------------CCCcceeeceEEEcCCcEEEEEcCCCChHHHHHHHHhcCcCCCccEEEE
Q psy1503 88 HVSLDNVTAQWSLQ-----------------NADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSL 150 (265)
Q Consensus 88 ~i~~~~~~~~~~~~-----------------~~~~~l~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~ 150 (265)
.|+++|+++.|... ...++++++||+|++|++++|+||||||||||+++|+|+++|++|+|.+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~is~~i~~Ge~~~liG~NGsGKSTLlk~L~Gl~~p~~G~I~~ 83 (264)
T PRK13546 4 SVNIKNVTKEYRIYRTNKERMKDALIPKHKNKTFFALDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLSPTVGKVDR 83 (264)
T ss_pred eEEEeeeEEEEEecccchHHHHHHhhhhccCCceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEE
Confidence 57888888888542 1245899999999999999999999999999999999999999999999
Q ss_pred cCeEEEEecCCCCcc-ccHHHHHhcCC---cccHHHH----HHHHHHhcchhHHhcCCCCCccccCCCCCCCCHHHHHHH
Q psy1503 151 GGTVSYASQEPWIFA-ATIRQNILFGL---PYLRRRY----ADVIRVCALQDDFDSLPNGDFTVVGERGASLSGGQKARI 222 (265)
Q Consensus 151 ~g~i~~v~Q~~~l~~-~ti~eni~~~~---~~~~~~~----~~~~~~~~l~~~i~~l~~g~~t~vg~~g~~LSgGqrqRi 222 (265)
+|.+++++|++.+++ .|+.+|+.++. ....+.. ..+++..++.+ .+.....+||||||||+
T Consensus 84 ~g~~~~~~~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LS~Gq~qrv 152 (264)
T PRK13546 84 NGEVSVIAISAGLSGQLTGIENIEFKMLCMGFKRKEIKAMTPKIIEFSELGE-----------FIYQPVKKYSSGMRAKL 152 (264)
T ss_pred CCEEeEEecccCCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCch-----------hhcCCcccCCHHHHHHH
Confidence 999999999988775 59999997632 1122221 22233333322 23445678999999999
Q ss_pred HHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHH
Q psy1503 223 NLARAVYKNADIYLLDDPLSAVDMHVGKHLFEDC 256 (265)
Q Consensus 223 alARal~~~~~illLDEp~s~LD~~~~~~i~~~~ 256 (265)
+||||++.+|+++||||||++||+.+...+++..
T Consensus 153 ~Laral~~~p~iLlLDEPt~gLD~~~~~~l~~~L 186 (264)
T PRK13546 153 GFSINITVNPDILVIDEALSVGDQTFAQKCLDKI 186 (264)
T ss_pred HHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHH
Confidence 9999999999999999999999999988886643
No 283
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.2e-34 Score=278.64 Aligned_cols=159 Identities=25% Similarity=0.339 Sum_probs=125.0
Q ss_pred EEeEEEEeCCCCCCcceeeceEEEcCCcEEEEEcCCCChHHHHHHHHhcCcCCCccEEEEcCe--------------EEE
Q psy1503 91 LDNVTAQWSLQNADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSLGGT--------------VSY 156 (265)
Q Consensus 91 ~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g~--------------i~~ 156 (265)
++|++++|++ .++|+|+||++++|++++|+||||||||||+++|+|+++|++|+|.++|. ++|
T Consensus 1 ~~nl~~~~~~---~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~ 77 (491)
T PRK10982 1 MSNISKSFPG---VKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKDSGSILFQGKEIDFKSSKEALENGISM 77 (491)
T ss_pred CCceEEEeCC---EEeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCEECCCCCHHHHHhCCEEE
Confidence 3688999953 46899999999999999999999999999999999999999999999872 899
Q ss_pred EecCCCCcc-ccHHHHHhcCCc-c-----cHHHHHHHHHHhcchhHHhcCCCCCccccCCCCCCCCHHHHHHHHHHHHHc
Q psy1503 157 ASQEPWIFA-ATIRQNILFGLP-Y-----LRRRYADVIRVCALQDDFDSLPNGDFTVVGERGASLSGGQKARINLARAVY 229 (265)
Q Consensus 157 v~Q~~~l~~-~ti~eni~~~~~-~-----~~~~~~~~~~~~~l~~~i~~l~~g~~t~vg~~g~~LSgGqrqRialARal~ 229 (265)
++|++.+++ .|++||+.++.. . ......+. ..+.++.+ +..........+||||||||++|||||+
T Consensus 78 v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~-----~~~~l~~~--~l~~~~~~~~~~LSgGq~qrv~lA~al~ 150 (491)
T PRK10982 78 VHQELNLVLQRSVMDNMWLGRYPTKGMFVDQDKMYRD-----TKAIFDEL--DIDIDPRAKVATLSVSQMQMIEIAKAFS 150 (491)
T ss_pred EecccccccCCCHHHHhhcccccccccccCHHHHHHH-----HHHHHHHc--CCCCCccCchhhCCHHHHHHHHHHHHHH
Confidence 999998775 599999987531 1 11111111 11122222 1222234556799999999999999999
Q ss_pred cCCCEEEEeCCCCCcCHHHHHHHHHHHHHHH
Q psy1503 230 KNADIYLLDDPLSAVDMHVGKHLFEDCISGC 260 (265)
Q Consensus 230 ~~~~illLDEp~s~LD~~~~~~i~~~~i~~~ 260 (265)
.+|+++||||||++||+.+...+++. +..+
T Consensus 151 ~~p~lllLDEPt~~LD~~~~~~l~~~-l~~l 180 (491)
T PRK10982 151 YNAKIVIMDEPTSSLTEKEVNHLFTI-IRKL 180 (491)
T ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHH-HHHH
Confidence 99999999999999999999998663 4443
No 284
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=100.00 E-value=2.2e-34 Score=277.45 Aligned_cols=158 Identities=22% Similarity=0.369 Sum_probs=126.3
Q ss_pred EEEEeEEEEeCCCCCCcceeeceEEEcCCcEEEEEcCCCChHHHHHHHHhcCcCC--CccEEEEcC--------------
Q psy1503 89 VSLDNVTAQWSLQNADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRI--SSGKVSLGG-------------- 152 (265)
Q Consensus 89 i~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~--~~G~i~~~g-------------- 152 (265)
++++|++++|+. .++|+|+||++++|++++|+||||||||||+++|+|+++| ++|+|.++|
T Consensus 2 l~i~~l~~~~~~---~~il~~isl~i~~Ge~~~liG~nGsGKSTLl~~i~G~~~~~~~~G~i~~~g~~~~~~~~~~~~~~ 78 (500)
T TIGR02633 2 LEMKGIVKTFGG---VKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSPLKASNIRDTERA 78 (500)
T ss_pred EEEEeEEEEeCC---eEeecceEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHhC
Confidence 789999999953 4689999999999999999999999999999999999987 799999987
Q ss_pred eEEEEecCCCCcc-ccHHHHHhcCCcc-------cHH----HHHHHHHHhcchhHHhcCCCCCccccCCCCCCCCHHHHH
Q psy1503 153 TVSYASQEPWIFA-ATIRQNILFGLPY-------LRR----RYADVIRVCALQDDFDSLPNGDFTVVGERGASLSGGQKA 220 (265)
Q Consensus 153 ~i~~v~Q~~~l~~-~ti~eni~~~~~~-------~~~----~~~~~~~~~~l~~~i~~l~~g~~t~vg~~g~~LSgGqrq 220 (265)
.++|++|++.+++ .|+.||+.++... ..+ +..++++.+++.... ......+|||||||
T Consensus 79 ~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~----------~~~~~~~LSgG~~q 148 (500)
T TIGR02633 79 GIVIIHQELTLVPELSVAENIFLGNEITLPGGRMAYNAMYLRAKNLLRELQLDADN----------VTRPVGDYGGGQQQ 148 (500)
T ss_pred CEEEEeeccccCCCCcHHHHHHhhccccccccccCHHHHHHHHHHHHHHcCCCCCc----------ccCchhhCCHHHHH
Confidence 2899999998886 5999999875321 111 122223333221100 12335689999999
Q ss_pred HHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHH
Q psy1503 221 RINLARAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGC 260 (265)
Q Consensus 221 RialARal~~~~~illLDEp~s~LD~~~~~~i~~~~i~~~ 260 (265)
|++|||||+.+|+++||||||++||+.+...+.+ .+..+
T Consensus 149 rv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~-~l~~l 187 (500)
T TIGR02633 149 LVEIAKALNKQARLLILDEPSSSLTEKETEILLD-IIRDL 187 (500)
T ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHH-HHHHH
Confidence 9999999999999999999999999999999866 44443
No 285
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=100.00 E-value=1.9e-34 Score=281.30 Aligned_cols=163 Identities=26% Similarity=0.365 Sum_probs=126.8
Q ss_pred CcEEEEeEEEEeCCCCCCcceeeceEEEcCCcEEEEEcCCCChHHHHHHHHhcCcCCCccEEEEcC--eEEEEecCCCCc
Q psy1503 87 GHVSLDNVTAQWSLQNADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSLGG--TVSYASQEPWIF 164 (265)
Q Consensus 87 ~~i~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g--~i~~v~Q~~~l~ 164 (265)
.+|+++|++++|+. ++++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.+++ .++|++|+|+++
T Consensus 5 ~~l~i~~l~~~y~~--~~~il~~vs~~i~~Ge~~~iiG~NGsGKSTLlk~i~G~~~p~~G~i~~~~~~~i~~v~Q~~~~~ 82 (556)
T PRK11819 5 YIYTMNRVSKVVPP--KKQILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFEGEARPAPGIKVGYLPQEPQLD 82 (556)
T ss_pred EEEEEeeEEEEeCC--CCeeeeCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCCEEEEEecCCCCC
Confidence 37999999999962 25699999999999999999999999999999999999999999999874 599999999998
Q ss_pred cc-cHHHHHhcCCcc-c--HHH---------------------HH---HHHHH-------hcchhHHhcCCCCCccccCC
Q psy1503 165 AA-TIRQNILFGLPY-L--RRR---------------------YA---DVIRV-------CALQDDFDSLPNGDFTVVGE 209 (265)
Q Consensus 165 ~~-ti~eni~~~~~~-~--~~~---------------------~~---~~~~~-------~~l~~~i~~l~~g~~t~vg~ 209 (265)
+. |+.||+.++... . ... +. +..+. ..+...++.+ |.. ....
T Consensus 83 ~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--gl~-~~~~ 159 (556)
T PRK11819 83 PEKTVRENVEEGVAEVKAALDRFNEIYAAYAEPDADFDALAAEQGELQEIIDAADAWDLDSQLEIAMDAL--RCP-PWDA 159 (556)
T ss_pred CCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCccchHHHHHHHHHhC--CCC-cccC
Confidence 64 999999875310 0 000 00 00000 0011122222 111 1345
Q ss_pred CCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHH
Q psy1503 210 RGASLSGGQKARINLARAVYKNADIYLLDDPLSAVDMHVGKHLFE 254 (265)
Q Consensus 210 ~g~~LSgGqrqRialARal~~~~~illLDEp~s~LD~~~~~~i~~ 254 (265)
+..+|||||||||+|||||+.+|+++|||||||+||+.+...+.+
T Consensus 160 ~~~~LSgGqkqrv~la~al~~~p~vlLLDEPt~~LD~~~~~~l~~ 204 (556)
T PRK11819 160 KVTKLSGGERRRVALCRLLLEKPDMLLLDEPTNHLDAESVAWLEQ 204 (556)
T ss_pred chhhcCHHHHHHHHHHHHHhCCCCEEEEcCCCCcCChHHHHHHHH
Confidence 667899999999999999999999999999999999999988754
No 286
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=100.00 E-value=2.1e-34 Score=254.25 Aligned_cols=152 Identities=22% Similarity=0.323 Sum_probs=120.1
Q ss_pred EEeCCCCCCcceeeceEEEc-----CCcEEEEEcCCCChHHHHHHHHhcCcCCCccEEEEcC-eEEEEecCCCC-ccccH
Q psy1503 96 AQWSLQNADLTLNAVSITFK-----PKQLACIIGAIGAGKTSLLHIILNELRISSGKVSLGG-TVSYASQEPWI-FAATI 168 (265)
Q Consensus 96 ~~~~~~~~~~~l~~isl~i~-----~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g-~i~~v~Q~~~l-~~~ti 168 (265)
|+|++. ...+++++|+++ +|++++|+||||||||||+++|+|+++|++|+|.++| .++|++|++.. ++.|+
T Consensus 1 ~~y~~~--~~~~~~~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~L~G~~~p~~G~i~~~g~~i~~~~q~~~~~~~~tv 78 (246)
T cd03237 1 YTYPTM--KKTLGEFTLEVEGGSISESEVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELDTVSYKPQYIKADYEGTV 78 (246)
T ss_pred CCCccc--ccccCcEEEEEecCCcCCCCEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCceEEEecccccCCCCCCH
Confidence 456532 346777777776 7999999999999999999999999999999999999 79999999875 57899
Q ss_pred HHHHhcCCcc---cHHHHHHHHHHhcchhHHhcCCCCCccccCCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCcC
Q psy1503 169 RQNILFGLPY---LRRRYADVIRVCALQDDFDSLPNGDFTVVGERGASLSGGQKARINLARAVYKNADIYLLDDPLSAVD 245 (265)
Q Consensus 169 ~eni~~~~~~---~~~~~~~~~~~~~l~~~i~~l~~g~~t~vg~~g~~LSgGqrqRialARal~~~~~illLDEp~s~LD 245 (265)
+||+.+.... ...+..++++.+++.+. ......+||||||||++|||||+.+|+++||||||++||
T Consensus 79 ~e~l~~~~~~~~~~~~~~~~~l~~l~l~~~-----------~~~~~~~LSgGe~qrv~iaraL~~~p~llllDEPt~~LD 147 (246)
T cd03237 79 RDLLSSITKDFYTHPYFKTEIAKPLQIEQI-----------LDREVPELSGGELQRVAIAACLSKDADIYLLDEPSAYLD 147 (246)
T ss_pred HHHHHHHhhhccccHHHHHHHHHHcCCHHH-----------hhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCC
Confidence 9999753211 11223445555555433 234557899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHh
Q psy1503 246 MHVGKHLFEDCISGCL 261 (265)
Q Consensus 246 ~~~~~~i~~~~i~~~l 261 (265)
+.+...+.+ .+..+.
T Consensus 148 ~~~~~~l~~-~l~~~~ 162 (246)
T cd03237 148 VEQRLMASK-VIRRFA 162 (246)
T ss_pred HHHHHHHHH-HHHHHH
Confidence 999988754 455543
No 287
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.1e-34 Score=282.26 Aligned_cols=162 Identities=21% Similarity=0.363 Sum_probs=130.6
Q ss_pred CcEEEEeEEEEeCCCC--------CCcceeeceEEEcCCcEEEEEcCCCChHHHHHHHHhcCcCCCccEEEEcCe-----
Q psy1503 87 GHVSLDNVTAQWSLQN--------ADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSLGGT----- 153 (265)
Q Consensus 87 ~~i~~~~~~~~~~~~~--------~~~~l~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g~----- 153 (265)
..++++|+++.|+... ...+++|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.
T Consensus 312 ~~L~~~~l~~~y~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~lvG~nGsGKSTLlk~i~Gl~~p~~G~I~~~g~~i~~~ 391 (623)
T PRK10261 312 PILQVRNLVTRFPLRSGLLNRVTREVHAVEKVSFDLWPGETLSLVGESGSGKSTTGRALLRLVESQGGEIIFNGQRIDTL 391 (623)
T ss_pred ceEEEeeeEEEEcCCCccccccCCceEEEeeeEeEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCcEEEECCEECCcC
Confidence 4699999999996211 135899999999999999999999999999999999999999999999872
Q ss_pred -----------EEEEecCCC--Ccc-ccHHHHHhcCC---cc-c----HHHHHHHHHHhcch-hHHhcCCCCCccccCCC
Q psy1503 154 -----------VSYASQEPW--IFA-ATIRQNILFGL---PY-L----RRRYADVIRVCALQ-DDFDSLPNGDFTVVGER 210 (265)
Q Consensus 154 -----------i~~v~Q~~~--l~~-~ti~eni~~~~---~~-~----~~~~~~~~~~~~l~-~~i~~l~~g~~t~vg~~ 210 (265)
|+|++|++. +++ .|+.+|+.++. .. . .+++.++++.+++. +..+ ..
T Consensus 392 ~~~~~~~~~~~i~~v~Q~~~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~-----------~~ 460 (623)
T PRK10261 392 SPGKLQALRRDIQFIFQDPYASLDPRQTVGDSIMEPLRVHGLLPGKAAAARVAWLLERVGLLPEHAW-----------RY 460 (623)
T ss_pred CHHHHHHhcCCeEEEecCchhhcCCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCHHHhh-----------CC
Confidence 899999983 665 59999997532 11 1 12334455555553 2222 34
Q ss_pred CCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHH
Q psy1503 211 GASLSGGQKARINLARAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGC 260 (265)
Q Consensus 211 g~~LSgGqrqRialARal~~~~~illLDEp~s~LD~~~~~~i~~~~i~~~ 260 (265)
..+|||||||||+|||||+.+|+++||||||++||+.+..++++ .+..+
T Consensus 461 ~~~LSgGqrQRv~iAraL~~~p~llllDEPts~LD~~~~~~i~~-ll~~l 509 (623)
T PRK10261 461 PHEFSGGQRQRICIARALALNPKVIIADEAVSALDVSIRGQIIN-LLLDL 509 (623)
T ss_pred cccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHH-HHHHH
Confidence 56899999999999999999999999999999999999999865 44444
No 288
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=100.00 E-value=3.6e-34 Score=279.12 Aligned_cols=163 Identities=25% Similarity=0.337 Sum_probs=129.1
Q ss_pred cEEEEeEEEEeCCCCCCcceeeceEEEcCCcEEEEEcCCCChHHHHHHHHhcCcCCCccEEEEcC--eEEEEecCCCCcc
Q psy1503 88 HVSLDNVTAQWSLQNADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSLGG--TVSYASQEPWIFA 165 (265)
Q Consensus 88 ~i~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g--~i~~v~Q~~~l~~ 165 (265)
+++++|++++|+. .+++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.+++ .++|++|++++++
T Consensus 4 ~i~~~nls~~~~~--~~~il~~is~~i~~Ge~~~liG~NGsGKSTLl~~i~G~~~p~~G~i~~~~~~~i~~v~Q~~~~~~ 81 (552)
T TIGR03719 4 IYTMNRVSKVVPP--KKEILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFNGEARPAPGIKVGYLPQEPQLDP 81 (552)
T ss_pred EEEEeeEEEecCC--CCeeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCCEEEEEeccCCCCC
Confidence 6899999999962 24699999999999999999999999999999999999999999999875 5999999999886
Q ss_pred -ccHHHHHhcCCcc------------------cH---------HHHHHHHHHhcch-------hHHhcCCCCCccccCCC
Q psy1503 166 -ATIRQNILFGLPY------------------LR---------RRYADVIRVCALQ-------DDFDSLPNGDFTVVGER 210 (265)
Q Consensus 166 -~ti~eni~~~~~~------------------~~---------~~~~~~~~~~~l~-------~~i~~l~~g~~t~vg~~ 210 (265)
.|++||+.++... .. .++.++++.++.. ..+..+ |.. .....
T Consensus 82 ~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~l~-~~~~~ 158 (552)
T TIGR03719 82 TKTVRENVEEGVAEIKDALDRFNEISAKFAEPDADMDALLAEQAELQEIIDAADAWDLDRKLEIAMDAL--RCP-PWDAD 158 (552)
T ss_pred CCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCcchhHHHHHHHHhhC--CCC-cccCc
Confidence 5999999875311 00 0122222333321 122222 111 12456
Q ss_pred CCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHH
Q psy1503 211 GASLSGGQKARINLARAVYKNADIYLLDDPLSAVDMHVGKHLFED 255 (265)
Q Consensus 211 g~~LSgGqrqRialARal~~~~~illLDEp~s~LD~~~~~~i~~~ 255 (265)
..+||||||||++|||||+.+|+++||||||++||+.+...+.+.
T Consensus 159 ~~~LSgGqkqrv~la~al~~~p~lLLLDEPt~~LD~~~~~~l~~~ 203 (552)
T TIGR03719 159 VTKLSGGERRRVALCRLLLSKPDMLLLDEPTNHLDAESVAWLEQH 203 (552)
T ss_pred hhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCChHHHHHHHHH
Confidence 789999999999999999999999999999999999999887653
No 289
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=100.00 E-value=3.7e-34 Score=277.15 Aligned_cols=167 Identities=23% Similarity=0.351 Sum_probs=129.7
Q ss_pred CcEEEEeEEEEeCC--CCCCcceeeceEEEcCCcEEEEEcCCCChHHHHHHHHhcCcCCCccEEEEc-C-----------
Q psy1503 87 GHVSLDNVTAQWSL--QNADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSLG-G----------- 152 (265)
Q Consensus 87 ~~i~~~~~~~~~~~--~~~~~~l~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~-g----------- 152 (265)
..++++|++++|+. ....++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++ |
T Consensus 278 ~~l~~~~l~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~~g~~~~~~~~~~~ 357 (520)
T TIGR03269 278 PIIKVRNVSKRYISVDRGVVKAVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPTSGEVNVRVGDEWVDMTKPGP 357 (520)
T ss_pred ceEEEeccEEEeccCCCCCceEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEEecCCccccccccch
Confidence 46999999999953 112468999999999999999999999999999999999999999999984 3
Q ss_pred --------eEEEEecCCCCcc-ccHHHHHhcCCc--cc----HHHHHHHHHHhcchhHHhcCCCCCccccCCCCCCCCHH
Q psy1503 153 --------TVSYASQEPWIFA-ATIRQNILFGLP--YL----RRRYADVIRVCALQDDFDSLPNGDFTVVGERGASLSGG 217 (265)
Q Consensus 153 --------~i~~v~Q~~~l~~-~ti~eni~~~~~--~~----~~~~~~~~~~~~l~~~i~~l~~g~~t~vg~~g~~LSgG 217 (265)
.++|++|++.+++ .|+.||+.++.. .. .++..++++.+++... ..+........+||||
T Consensus 358 ~~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~l~~~~l~~~------~~~~~~~~~~~~LSgG 431 (520)
T TIGR03269 358 DGRGRAKRYIGILHQEYDLYPHRTVLDNLTEAIGLELPDELARMKAVITLKMVGFDEE------KAEEILDKYPDELSEG 431 (520)
T ss_pred hhHHHHhhhEEEEccCcccCCCCcHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCCCc------cchhhhhCChhhCCHH
Confidence 2899999998886 599999975321 11 1122333444443210 0001123456789999
Q ss_pred HHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHH
Q psy1503 218 QKARINLARAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGC 260 (265)
Q Consensus 218 qrqRialARal~~~~~illLDEp~s~LD~~~~~~i~~~~i~~~ 260 (265)
||||++|||||+.+|+++||||||++||+.+.+.+.+ .+..+
T Consensus 432 q~qrv~laral~~~p~lLllDEPt~~LD~~~~~~l~~-~l~~l 473 (520)
T TIGR03269 432 ERHRVALAQVLIKEPRIVILDEPTGTMDPITKVDVTH-SILKA 473 (520)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHH-HHHHH
Confidence 9999999999999999999999999999999998865 44444
No 290
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=100.00 E-value=2.7e-34 Score=276.17 Aligned_cols=157 Identities=23% Similarity=0.265 Sum_probs=128.4
Q ss_pred cEEEEeEEEEeCCCCCCcceeeceEEEcCCcEEEEEcCCCChHHHHHHHHhcCcCCCccEEEEcCe-------------E
Q psy1503 88 HVSLDNVTAQWSLQNADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSLGGT-------------V 154 (265)
Q Consensus 88 ~i~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g~-------------i 154 (265)
+|+++|++++|+. ..+|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|. +
T Consensus 3 ~l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~G~~~p~~G~i~~~~~~~~~~~~~~~~~~i 79 (490)
T PRK10938 3 SLQISQGTFRLSD---TKTLQLPSLTLNAGDSWAFVGANGSGKSALARALAGELPLLSGERQSQFSHITRLSFEQLQKLV 79 (490)
T ss_pred eEEEEeEEEEcCC---eeecccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCceEEECCcccccCCHHHHHHHh
Confidence 5899999999963 35899999999999999999999999999999999999999999998762 7
Q ss_pred EEEecCCCC--c-------cccHHHHHhcCCcccHHHHHHHHHHhcchhHHhcCCCCCccccCCCCCCCCHHHHHHHHHH
Q psy1503 155 SYASQEPWI--F-------AATIRQNILFGLPYLRRRYADVIRVCALQDDFDSLPNGDFTVVGERGASLSGGQKARINLA 225 (265)
Q Consensus 155 ~~v~Q~~~l--~-------~~ti~eni~~~~~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~vg~~g~~LSgGqrqRialA 225 (265)
+|++|++.+ + ..|+++|+.++.. ..++..++++..++.+..+ ....+||||||||++||
T Consensus 80 ~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~l~~~~~-----------~~~~~LSgG~~qrv~la 147 (490)
T PRK10938 80 SDEWQRNNTDMLSPGEDDTGRTTAEIIQDEVK-DPARCEQLAQQFGITALLD-----------RRFKYLSTGETRKTLLC 147 (490)
T ss_pred ceeccCcchhhcccchhhccccHHHhcccchh-HHHHHHHHHHHcCCHhhhh-----------CCcccCCHHHHHHHHHH
Confidence 899998642 1 3588998765421 2334555666666644332 34568999999999999
Q ss_pred HHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHH
Q psy1503 226 RAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGC 260 (265)
Q Consensus 226 Ral~~~~~illLDEp~s~LD~~~~~~i~~~~i~~~ 260 (265)
|||+.+|+++||||||++||+.+.+.+.+ .+..+
T Consensus 148 ~al~~~p~lllLDEPt~~LD~~~~~~l~~-~l~~~ 181 (490)
T PRK10938 148 QALMSEPDLLILDEPFDGLDVASRQQLAE-LLASL 181 (490)
T ss_pred HHHHcCCCEEEEcCCcccCCHHHHHHHHH-HHHHH
Confidence 99999999999999999999999998866 44443
No 291
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=100.00 E-value=7.4e-34 Score=250.03 Aligned_cols=159 Identities=19% Similarity=0.304 Sum_probs=119.2
Q ss_pred cEEEEeEEEEeCCCCCCcceeeceEEEcCCcEEEEEcCCCChHHHHHHHHhcCc--CCCccEEEEcCe------------
Q psy1503 88 HVSLDNVTAQWSLQNADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNEL--RISSGKVSLGGT------------ 153 (265)
Q Consensus 88 ~i~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~g~~--~~~~G~i~~~g~------------ 153 (265)
+++++|++++|+. .++++|+||+|++|++++|+||||||||||+++|+|++ +|++|+|.++|.
T Consensus 1 ~i~~~nl~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~ 77 (248)
T PRK09580 1 MLSIKDLHVSVED---KAILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLELSPEDRAG 77 (248)
T ss_pred CeEEEEEEEEeCC---eeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCccCCCCceEEEECCCccccCCHHHHhh
Confidence 3789999999963 46899999999999999999999999999999999995 699999999872
Q ss_pred --EEEEecCCCCccc-cHHHHHhcCC-------cc---cH----HHHHHHHHHhcchhHHhcCCCCCccccCCCC-CCCC
Q psy1503 154 --VSYASQEPWIFAA-TIRQNILFGL-------PY---LR----RRYADVIRVCALQDDFDSLPNGDFTVVGERG-ASLS 215 (265)
Q Consensus 154 --i~~v~Q~~~l~~~-ti~eni~~~~-------~~---~~----~~~~~~~~~~~l~~~i~~l~~g~~t~vg~~g-~~LS 215 (265)
++|++|++.+++. |..+++.+.. .. +. ++..+.++.. .+|.++.+ ... .+||
T Consensus 78 ~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-------~l~~~~~~---~~~~~~LS 147 (248)
T PRK09580 78 EGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQEPLDRFDFQDLMEEKIALL-------KMPEDLLT---RSVNVGFS 147 (248)
T ss_pred cceEEEecCchhccchhHHHHHHHhhhhhhcccccccchHHHHHHHHHHHHHHc-------CCChhhcc---cCCCCCCC
Confidence 8999999987754 5555543211 00 00 0111111111 12222222 222 3799
Q ss_pred HHHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHH
Q psy1503 216 GGQKARINLARAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGC 260 (265)
Q Consensus 216 gGqrqRialARal~~~~~illLDEp~s~LD~~~~~~i~~~~i~~~ 260 (265)
||||||++||||++++|+++||||||++||+.+...+.+ .+..+
T Consensus 148 ~G~~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~-~l~~l 191 (248)
T PRK09580 148 GGEKKRNDILQMAVLEPELCILDESDSGLDIDALKIVAD-GVNSL 191 (248)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHH-HHHHH
Confidence 999999999999999999999999999999999988855 44443
No 292
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=100.00 E-value=4.3e-34 Score=276.65 Aligned_cols=159 Identities=26% Similarity=0.429 Sum_probs=127.8
Q ss_pred EEEEeEEEEeCCCCCCcceeeceEEEcCCcEEEEEcCCCChHHHHHHHHhcCc--CCCccEEEEc---------------
Q psy1503 89 VSLDNVTAQWSLQNADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNEL--RISSGKVSLG--------------- 151 (265)
Q Consensus 89 i~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~g~~--~~~~G~i~~~--------------- 151 (265)
|+++|++++|+. .++|+|+||++++|++++|+||||||||||+++|+|++ +|++|+|.++
T Consensus 1 l~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~~~p~~G~i~~~~~~~~~~~~~~~~~~ 77 (520)
T TIGR03269 1 IEVKNLTKKFDG---KEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGRIIYHVALCEKCGYVERPSK 77 (520)
T ss_pred CEEEEEEEEECC---eEeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhhcccCCCCceEEEEeccccccccccccccc
Confidence 478999999953 46899999999999999999999999999999999996 7999999885
Q ss_pred --------C-----------------------eEEEEecC-CCCcc-ccHHHHHhcCCc---cc----HHHHHHHHHHhc
Q psy1503 152 --------G-----------------------TVSYASQE-PWIFA-ATIRQNILFGLP---YL----RRRYADVIRVCA 191 (265)
Q Consensus 152 --------g-----------------------~i~~v~Q~-~~l~~-~ti~eni~~~~~---~~----~~~~~~~~~~~~ 191 (265)
| .++|++|+ +.+|+ .|++||+.++.. .. .+++.++++.++
T Consensus 78 ~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~g 157 (520)
T TIGR03269 78 VGEPCPVCGGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQRTFALYGDDTVLDNVLEALEEIGYEGKEAVGRAVDLIEMVQ 157 (520)
T ss_pred cccccccccccccccchhhhccCHHHHHHhhhcEEEEeccccccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcC
Confidence 1 28999997 56776 599999987421 11 123344455555
Q ss_pred chhHHhcCCCCCccccCCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHHhh
Q psy1503 192 LQDDFDSLPNGDFTVVGERGASLSGGQKARINLARAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGCLT 262 (265)
Q Consensus 192 l~~~i~~l~~g~~t~vg~~g~~LSgGqrqRialARal~~~~~illLDEp~s~LD~~~~~~i~~~~i~~~l~ 262 (265)
+.+.. .....+||||||||++|||||+.+|+++||||||++||+.+.+.+++ .+..+.+
T Consensus 158 l~~~~-----------~~~~~~LSgGq~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~-~l~~l~~ 216 (520)
T TIGR03269 158 LSHRI-----------THIARDLSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHN-ALEEAVK 216 (520)
T ss_pred Chhhh-----------hcCcccCCHHHHHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHH-HHHHHHH
Confidence 54332 23457899999999999999999999999999999999999999865 4444433
No 293
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=100.00 E-value=6.2e-34 Score=236.32 Aligned_cols=127 Identities=27% Similarity=0.458 Sum_probs=101.1
Q ss_pred EEEEeEEEEeCCCCCCcceeeceEEEcCCcEEEEEcCCCChHHHHHHHHhcCcCCCccEEEEcCe-EEEEecCCCCcccc
Q psy1503 89 VSLDNVTAQWSLQNADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSLGGT-VSYASQEPWIFAAT 167 (265)
Q Consensus 89 i~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g~-i~~v~Q~~~l~~~t 167 (265)
++++|++++|+. .++++++||++++|++++|+||||||||||+++|+|+++|++|+|.++|. +.. .+
T Consensus 1 l~~~~l~~~~~~---~~vl~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~---------~~ 68 (163)
T cd03216 1 LELRGITKRFGG---VKALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEILVDGKEVSF---------AS 68 (163)
T ss_pred CEEEEEEEEECC---eEEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCc---------CC
Confidence 478999999963 46999999999999999999999999999999999999999999999873 110 01
Q ss_pred HHHHHhcCCcccHHHHHHHHHHhcchhHHhcCCCCCccccCCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCcCHH
Q psy1503 168 IRQNILFGLPYLRRRYADVIRVCALQDDFDSLPNGDFTVVGERGASLSGGQKARINLARAVYKNADIYLLDDPLSAVDMH 247 (265)
Q Consensus 168 i~eni~~~~~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~vg~~g~~LSgGqrqRialARal~~~~~illLDEp~s~LD~~ 247 (265)
.++ ... + .+...+ +||||||||++||||++++|+++||||||++||..
T Consensus 69 ~~~-----------~~~---~------~i~~~~------------qLS~G~~qrl~laral~~~p~illlDEP~~~LD~~ 116 (163)
T cd03216 69 PRD-----------ARR---A------GIAMVY------------QLSVGERQMVEIARALARNARLLILDEPTAALTPA 116 (163)
T ss_pred HHH-----------HHh---c------CeEEEE------------ecCHHHHHHHHHHHHHhcCCCEEEEECCCcCCCHH
Confidence 000 000 0 011111 19999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHH
Q psy1503 248 VGKHLFEDCISGC 260 (265)
Q Consensus 248 ~~~~i~~~~i~~~ 260 (265)
+.+.+.+ .+..+
T Consensus 117 ~~~~l~~-~l~~~ 128 (163)
T cd03216 117 EVERLFK-VIRRL 128 (163)
T ss_pred HHHHHHH-HHHHH
Confidence 9998865 44443
No 294
>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=1.1e-34 Score=250.19 Aligned_cols=165 Identities=24% Similarity=0.368 Sum_probs=130.0
Q ss_pred cEEEEeEEEEeCCCCCCcceeeceEEEcCCcEEEEEcCCCChHHHHHHHHhcCcCCCccEEEEcCe--------------
Q psy1503 88 HVSLDNVTAQWSLQNADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSLGGT-------------- 153 (265)
Q Consensus 88 ~i~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g~-------------- 153 (265)
.+++++++++|++ -.+++||||++++|++++|+|||||||||++|+|.|+|+|++|+|.++|.
T Consensus 4 lL~v~~l~k~FGG---l~Al~~Vsl~v~~Gei~~LIGPNGAGKTTlfNlitG~~~P~~G~v~~~G~~it~l~p~~iar~G 80 (250)
T COG0411 4 LLEVRGLSKRFGG---LTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPSSGTVIFRGRDITGLPPHRIARLG 80 (250)
T ss_pred eeeeccceeecCC---EEEEeceeEEEcCCeEEEEECCCCCCceeeeeeecccccCCCceEEECCcccCCCCHHHHHhcc
Confidence 4789999999964 46899999999999999999999999999999999999999999999984
Q ss_pred EEEEecCCCCcc-ccHHHHHhcCCccc------------HHHHHHHHHHhcchhHHhcCCCCCccccCCCCCCCCHHHHH
Q psy1503 154 VSYASQEPWIFA-ATIRQNILFGLPYL------------RRRYADVIRVCALQDDFDSLPNGDFTVVGERGASLSGGQKA 220 (265)
Q Consensus 154 i~~v~Q~~~l~~-~ti~eni~~~~~~~------------~~~~~~~~~~~~l~~~i~~l~~g~~t~vg~~g~~LSgGqrq 220 (265)
|+..+|.+.+|+ .||.||+..+.... ..+..++.+. ....++.+ |+.....+...+||+|||.
T Consensus 81 i~RTFQ~~rlF~~lTVlENv~va~~~~~~~~~~l~~~~~~~~e~~~~e~--A~~~Le~v--gL~~~a~~~A~~LsyG~qR 156 (250)
T COG0411 81 IARTFQITRLFPGLTVLENVAVGAHARLGLSGLLGRPRARKEEREARER--ARELLEFV--GLGELADRPAGNLSYGQQR 156 (250)
T ss_pred ceeecccccccCCCcHHHHHHHHhhhhhhhhhhhccccchhhHHHHHHH--HHHHHHHc--CCchhhcchhhcCChhHhH
Confidence 899999999997 59999998763200 0011111111 11112211 2333445667899999999
Q ss_pred HHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHH
Q psy1503 221 RINLARAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGC 260 (265)
Q Consensus 221 RialARal~~~~~illLDEp~s~LD~~~~~~i~~~~i~~~ 260 (265)
|+.|||||+.+|++++||||.+||.+....++.+ .|..+
T Consensus 157 ~LEIArALa~~P~lLLLDEPaAGln~~e~~~l~~-~i~~i 195 (250)
T COG0411 157 RLEIARALATQPKLLLLDEPAAGLNPEETEELAE-LIREL 195 (250)
T ss_pred HHHHHHHHhcCCCEEEecCccCCCCHHHHHHHHH-HHHHH
Confidence 9999999999999999999999999998888855 44433
No 295
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.3e-33 Score=273.90 Aligned_cols=156 Identities=20% Similarity=0.293 Sum_probs=128.8
Q ss_pred CcEEEEeEEEEeCCCCCCcceeeceEEEcCCcEEEEEcCCCChHHHHHHHHhcCcCCCccEEEEcC--eEEEEecCCC--
Q psy1503 87 GHVSLDNVTAQWSLQNADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSLGG--TVSYASQEPW-- 162 (265)
Q Consensus 87 ~~i~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g--~i~~v~Q~~~-- 162 (265)
..++++|++++|+. ..+++|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++| .++|++|++.
T Consensus 318 ~~l~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~~~~i~~~~q~~~~~ 394 (530)
T PRK15064 318 NALEVENLTKGFDN---GPLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELEPDSGTVKWSENANIGYYAQDHAYD 394 (530)
T ss_pred ceEEEEeeEEeeCC---ceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCceEEEEEccccccc
Confidence 47999999999963 4589999999999999999999999999999999999999999999987 5999999974
Q ss_pred Ccc-ccHHHHHhcCC--cccHHHHHHHHHHhcchhHHhcCCCCCccccCCCCCCCCHHHHHHHHHHHHHccCCCEEEEeC
Q psy1503 163 IFA-ATIRQNILFGL--PYLRRRYADVIRVCALQDDFDSLPNGDFTVVGERGASLSGGQKARINLARAVYKNADIYLLDD 239 (265)
Q Consensus 163 l~~-~ti~eni~~~~--~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~vg~~g~~LSgGqrqRialARal~~~~~illLDE 239 (265)
+++ .|+++|+.+.. ....++..++++..++... .......+||||||||++||||++.+|+++||||
T Consensus 395 ~~~~~t~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~----------~~~~~~~~LSgGq~qrv~la~al~~~p~lllLDE 464 (530)
T PRK15064 395 FENDLTLFDWMSQWRQEGDDEQAVRGTLGRLLFSQD----------DIKKSVKVLSGGEKGRMLFGKLMMQKPNVLVMDE 464 (530)
T ss_pred CCCCCcHHHHHHHhccCCccHHHHHHHHHHcCCChh----------HhcCcccccCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 443 59999986421 1123344555555555211 1234567999999999999999999999999999
Q ss_pred CCCCcCHHHHHHHHHH
Q psy1503 240 PLSAVDMHVGKHLFED 255 (265)
Q Consensus 240 p~s~LD~~~~~~i~~~ 255 (265)
||++||+.+...+.+.
T Consensus 465 Pt~~LD~~~~~~l~~~ 480 (530)
T PRK15064 465 PTNHMDMESIESLNMA 480 (530)
T ss_pred CCCCCCHHHHHHHHHH
Confidence 9999999999888663
No 296
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=100.00 E-value=3.5e-34 Score=241.17 Aligned_cols=143 Identities=27% Similarity=0.435 Sum_probs=110.5
Q ss_pred EEEeEEEEeCCCCCCcceeeceEEEcCCcEEEEEcCCCChHHHHHHHHhcCcCCCccEEEEcCeEEEEecCCCCccccHH
Q psy1503 90 SLDNVTAQWSLQNADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSLGGTVSYASQEPWIFAATIR 169 (265)
Q Consensus 90 ~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g~i~~v~Q~~~l~~~ti~ 169 (265)
+++|++++|+. .++++++||++++|++++|+||||||||||+++|+|+++|++|+|.++|.- +.+ .-....+
T Consensus 1 ~~~~l~~~~~~---~~~l~~~~~~i~~G~~~~l~G~nGsGKStLl~~i~G~~~~~~G~v~~~g~~--~~~---~~~~~~~ 72 (180)
T cd03214 1 EVENLSVGYGG---RTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDGKD--LAS---LSPKELA 72 (180)
T ss_pred CeeEEEEEECC---eeeEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEE--CCc---CCHHHHH
Confidence 46899999963 468999999999999999999999999999999999999999999998741 000 0011122
Q ss_pred HHHhcCCcccHHHHHHHHHHhcchhHHhcCCCCCccccCCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHH
Q psy1503 170 QNILFGLPYLRRRYADVIRVCALQDDFDSLPNGDFTVVGERGASLSGGQKARINLARAVYKNADIYLLDDPLSAVDMHVG 249 (265)
Q Consensus 170 eni~~~~~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~vg~~g~~LSgGqrqRialARal~~~~~illLDEp~s~LD~~~~ 249 (265)
..+.+- .++++.+++.+.+. ..+.+||||||||++||||++.+|+++||||||++||+.+.
T Consensus 73 ~~i~~~--------~q~l~~~gl~~~~~-----------~~~~~LS~G~~qrl~laral~~~p~llllDEP~~~LD~~~~ 133 (180)
T cd03214 73 RKIAYV--------PQALELLGLAHLAD-----------RPFNELSGGERQRVLLARALAQEPPILLLDEPTSHLDIAHQ 133 (180)
T ss_pred HHHhHH--------HHHHHHcCCHhHhc-----------CCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHH
Confidence 222221 12555666654433 34568999999999999999999999999999999999998
Q ss_pred HHHHHHHHHHH
Q psy1503 250 KHLFEDCISGC 260 (265)
Q Consensus 250 ~~i~~~~i~~~ 260 (265)
..+.+ .+..+
T Consensus 134 ~~~~~-~l~~~ 143 (180)
T cd03214 134 IELLE-LLRRL 143 (180)
T ss_pred HHHHH-HHHHH
Confidence 88755 55444
No 297
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=100.00 E-value=1.4e-33 Score=273.65 Aligned_cols=164 Identities=20% Similarity=0.370 Sum_probs=128.2
Q ss_pred cEEEEeEEEEeCCC-CCCcceeeceEEEcCCcEEEEEcCCCChHHHHHHHHhcCcCC-----CccEEEEcC---------
Q psy1503 88 HVSLDNVTAQWSLQ-NADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRI-----SSGKVSLGG--------- 152 (265)
Q Consensus 88 ~i~~~~~~~~~~~~-~~~~~l~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~-----~~G~i~~~g--------- 152 (265)
+++++|++++|+.. ...++|+|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|
T Consensus 5 ~l~~~~l~~~~~~~~~~~~~l~~isl~i~~Ge~~~iiG~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~ 84 (529)
T PRK15134 5 LLAIENLSVAFRQQQTVRTVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLLPSPPVVYPSGDIRFHGESLLHASEQ 84 (529)
T ss_pred eEEEeceEEEecCCCCceeeeeceEEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCcCCccceEEEECCEecccCCHH
Confidence 68999999999631 124699999999999999999999999999999999999987 799998876
Q ss_pred --------eEEEEecCCC--Ccc-ccHHHHHhcCC----ccc----HHHHHHHHHHhcchhHHhcCCCCCccccCCCCCC
Q psy1503 153 --------TVSYASQEPW--IFA-ATIRQNILFGL----PYL----RRRYADVIRVCALQDDFDSLPNGDFTVVGERGAS 213 (265)
Q Consensus 153 --------~i~~v~Q~~~--l~~-~ti~eni~~~~----~~~----~~~~~~~~~~~~l~~~i~~l~~g~~t~vg~~g~~ 213 (265)
.++|++|++. +++ .|+.+|+.+.. ... .++..++++.+++.+.. ........+
T Consensus 85 ~~~~~~~~~ig~v~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~--------~~~~~~~~~ 156 (529)
T PRK15134 85 TLRGVRGNKIAMIFQEPMVSLNPLHTLEKQLYEVLSLHRGMRREAARGEILNCLDRVGIRQAA--------KRLTDYPHQ 156 (529)
T ss_pred HHHHHhcCceEEEecCchhhcCchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChH--------HHHhhCCcc
Confidence 2899999985 444 58999986421 111 12334455555553211 012345679
Q ss_pred CCHHHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHH
Q psy1503 214 LSGGQKARINLARAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGC 260 (265)
Q Consensus 214 LSgGqrqRialARal~~~~~illLDEp~s~LD~~~~~~i~~~~i~~~ 260 (265)
||||||||++|||||+.+|+++||||||++||+.+...+++ .+..+
T Consensus 157 LSgGe~qrv~iAraL~~~p~llllDEPt~~LD~~~~~~l~~-~l~~l 202 (529)
T PRK15134 157 LSGGERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILQ-LLREL 202 (529)
T ss_pred cCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHH-HHHHH
Confidence 99999999999999999999999999999999999998865 44444
No 298
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=5.5e-34 Score=275.11 Aligned_cols=163 Identities=20% Similarity=0.322 Sum_probs=127.3
Q ss_pred CcEEEEeEEEEeCCCCCCcceeeceEEEcCCcEEEEEcCCCChHHHHHHHHhcCcC-CCccEEEEcCe------------
Q psy1503 87 GHVSLDNVTAQWSLQNADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELR-ISSGKVSLGGT------------ 153 (265)
Q Consensus 87 ~~i~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~-~~~G~i~~~g~------------ 153 (265)
..|+++|++++|+.....++++|+||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|.
T Consensus 258 ~~l~~~~l~~~~~~~~~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~~~G~i~~~g~~~~~~~~~~~~~ 337 (506)
T PRK13549 258 VILEVRNLTAWDPVNPHIKRVDDVSFSLRRGEILGIAGLVGAGRTELVQCLFGAYPGRWEGEIFIDGKPVKIRNPQQAIA 337 (506)
T ss_pred ceEEEecCccccccccccccccceeeEEcCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCcEEEECCEECCCCCHHHHHH
Confidence 36999999999952113468999999999999999999999999999999999998 59999999872
Q ss_pred --EEEEecCC---CCcc-ccHHHHHhcCCc--c------cH----HHHHHHHHHhcchhHHhcCCCCCccccCCCCCCCC
Q psy1503 154 --VSYASQEP---WIFA-ATIRQNILFGLP--Y------LR----RRYADVIRVCALQDDFDSLPNGDFTVVGERGASLS 215 (265)
Q Consensus 154 --i~~v~Q~~---~l~~-~ti~eni~~~~~--~------~~----~~~~~~~~~~~l~~~i~~l~~g~~t~vg~~g~~LS 215 (265)
++|++|++ .+++ .|+.||+.++.. . +. ++..++++.+++.. ........+||
T Consensus 338 ~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~----------~~~~~~~~~LS 407 (506)
T PRK13549 338 QGIAMVPEDRKRDGIVPVMGVGKNITLAALDRFTGGSRIDDAAELKTILESIQRLKVKT----------ASPELAIARLS 407 (506)
T ss_pred CCCEEeCcchhhCCCcCCCCHHHHhhhhhhhhhccCcccChHHHHHHHHHHHHhcCccC----------CCcccccccCC
Confidence 89999996 4664 599999986521 1 11 11222233332210 12345567999
Q ss_pred HHHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHH
Q psy1503 216 GGQKARINLARAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGC 260 (265)
Q Consensus 216 gGqrqRialARal~~~~~illLDEp~s~LD~~~~~~i~~~~i~~~ 260 (265)
||||||++||||++.+|+++||||||++||+.+.+.+++ .+..+
T Consensus 408 gG~kqrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~-~l~~l 451 (506)
T PRK13549 408 GGNQQKAVLAKCLLLNPKILILDEPTRGIDVGAKYEIYK-LINQL 451 (506)
T ss_pred HHHHHHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHH-HHHHH
Confidence 999999999999999999999999999999999998865 44444
No 299
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=100.00 E-value=2.3e-33 Score=267.89 Aligned_cols=162 Identities=20% Similarity=0.248 Sum_probs=129.7
Q ss_pred CcEEEEeEEEEeCCCCCCcceeeceEEEcCCcEEEEEcCCCChHHHHHHHHhcCcCCCccEEEEcCeEEEEecCCCCcc-
Q psy1503 87 GHVSLDNVTAQWSLQNADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSLGGTVSYASQEPWIFA- 165 (265)
Q Consensus 87 ~~i~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g~i~~v~Q~~~l~~- 165 (265)
.+++++|++|+|+.....++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.-.++.+.+.+++
T Consensus 20 ~mL~lknL~~~~~~~~~~~IL~nVSfsI~~GEivgIiGpNGSGKSTLLkiLaGLl~P~sGeI~I~G~~~~i~~~~~l~~~ 99 (549)
T PRK13545 20 PFDKLKDLFFRSKDGEYHYALNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTMPNKGTVDIKGSAALIAISSGLNGQ 99 (549)
T ss_pred ceeEEEEEEEecCCCccceEEeeeEEEEeCCCEEEEEcCCCCCHHHHHHHHhCCCCCCceEEEECCEeeeEEeccccCCC
Confidence 4789999999997533356999999999999999999999999999999999999999999999997656666665654
Q ss_pred ccHHHHHhcCC---cccHH----HHHHHHHHhcchhHHhcCCCCCccccCCCCCCCCHHHHHHHHHHHHHccCCCEEEEe
Q psy1503 166 ATIRQNILFGL---PYLRR----RYADVIRVCALQDDFDSLPNGDFTVVGERGASLSGGQKARINLARAVYKNADIYLLD 238 (265)
Q Consensus 166 ~ti~eni~~~~---~~~~~----~~~~~~~~~~l~~~i~~l~~g~~t~vg~~g~~LSgGqrqRialARal~~~~~illLD 238 (265)
.|++||+.+.. ....+ +..++++.+++.+.+. .....||||||||++|||||+.+|+++|||
T Consensus 100 lTV~EnL~l~~~~~~~~~~e~~e~i~elLe~lgL~~~ld-----------~~~~~LSGGQrQRVaLArAL~~~P~LLLLD 168 (549)
T PRK13545 100 LTGIENIELKGLMMGLTKEKIKEIIPEIIEFADIGKFIY-----------QPVKTYSSGMKSRLGFAISVHINPDILVID 168 (549)
T ss_pred CcHHHHHHhhhhhcCCCHHHHHHHHHHHHHHcCChhHhh-----------CCcccCCHHHHHHHHHHHHHHhCCCEEEEE
Confidence 59999997632 11221 2234455555544333 345789999999999999999999999999
Q ss_pred CCCCCcCHHHHHHHHHHHHHHH
Q psy1503 239 DPLSAVDMHVGKHLFEDCISGC 260 (265)
Q Consensus 239 Ep~s~LD~~~~~~i~~~~i~~~ 260 (265)
|||++||+.+...+++. +..+
T Consensus 169 EPTsgLD~~sr~~Llel-L~el 189 (549)
T PRK13545 169 EALSVGDQTFTKKCLDK-MNEF 189 (549)
T ss_pred CCcccCCHHHHHHHHHH-HHHH
Confidence 99999999999888654 4443
No 300
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=100.00 E-value=5.7e-34 Score=228.45 Aligned_cols=123 Identities=37% Similarity=0.652 Sum_probs=108.8
Q ss_pred eeeceEEEcCCcEEEEEcCCCChHHHHHHHHhcCcCCCccEEEEcCe-------------EEEEecCCCCccc-cHHHHH
Q psy1503 107 LNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSLGGT-------------VSYASQEPWIFAA-TIRQNI 172 (265)
Q Consensus 107 l~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g~-------------i~~v~Q~~~l~~~-ti~eni 172 (265)
|+|+||+|++|++++|+|+||||||||+++|+|.++|++|+|.++|. ++|++|++++++. |+++|
T Consensus 1 L~~v~~~i~~g~~~~i~G~nGsGKStLl~~l~g~~~~~~G~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~tv~~~- 79 (137)
T PF00005_consen 1 LKNVSLEIKPGEIVAIVGPNGSGKSTLLKALAGLLPPDSGSILINGKDISDIDIEELRRRIGYVPQDPQLFPGLTVREN- 79 (137)
T ss_dssp EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSSHESEEEEEETTEEGTTSHHHHHHHTEEEEESSHCHHTTSBHHHH-
T ss_pred CCceEEEEcCCCEEEEEccCCCccccceeeecccccccccccccccccccccccccccccccccccccccccccccccc-
Confidence 68999999999999999999999999999999999999999999983 9999999999975 79999
Q ss_pred hcCCcccHHHHHHHHHHhcchhHHhcCCCCCccccCCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCC
Q psy1503 173 LFGLPYLRRRYADVIRVCALQDDFDSLPNGDFTVVGERGASLSGGQKARINLARAVYKNADIYLLDDPLS 242 (265)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~vg~~g~~LSgGqrqRialARal~~~~~illLDEp~s 242 (265)
...+++.++++.+++... .++.++.+...||||||||++||||++++|+++|||||||
T Consensus 80 -----~~~~~~~~~l~~l~~~~~-------~~~~~~~~~~~LS~Ge~~rl~la~al~~~~~llllDEPt~ 137 (137)
T PF00005_consen 80 -----ESDERIEEVLKKLGLEDL-------LDRKIGQRASSLSGGEKQRLALARALLKNPKLLLLDEPTN 137 (137)
T ss_dssp -----HHHHHHHHHHHHTTHGGG-------TGSBGTSCGGGSCHHHHHHHHHHHHHHTTSSEEEEESTTT
T ss_pred -----cccccccccccccccccc-------cccccccccchhhHHHHHHHHHHHHHHcCCCEEEEeCCCC
Confidence 334566777777766542 2345677789999999999999999999999999999997
No 301
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=100.00 E-value=9.7e-34 Score=247.14 Aligned_cols=146 Identities=21% Similarity=0.327 Sum_probs=115.2
Q ss_pred ceeeceEEEcCCcEEEEEcCCCChHHHHHHHHhcCcCC----CccEEEEcC-----------eEEEEecCCC-Cc-c-cc
Q psy1503 106 TLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRI----SSGKVSLGG-----------TVSYASQEPW-IF-A-AT 167 (265)
Q Consensus 106 ~l~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~----~~G~i~~~g-----------~i~~v~Q~~~-l~-~-~t 167 (265)
+++|+||+|++|++++|+||||||||||+++|+|+++| ++|+|.++| .++|++|++. .| + .|
T Consensus 1 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~~~t 80 (230)
T TIGR02770 1 LVQDLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPLSIRGRHIATIMQNPRTAFNPLFT 80 (230)
T ss_pred CccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCccCccccEEEECCEechhhhhhhheeEEEecCchhhcCcccC
Confidence 47899999999999999999999999999999999999 899999987 3899999985 34 3 59
Q ss_pred HHHHHhcCCc-----c--cHHHHHHHHHHhcchhHHhcCCCCCccccCCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCC
Q psy1503 168 IRQNILFGLP-----Y--LRRRYADVIRVCALQDDFDSLPNGDFTVVGERGASLSGGQKARINLARAVYKNADIYLLDDP 240 (265)
Q Consensus 168 i~eni~~~~~-----~--~~~~~~~~~~~~~l~~~i~~l~~g~~t~vg~~g~~LSgGqrqRialARal~~~~~illLDEp 240 (265)
+.+|+.+... . ..+++.++++.+++.+ + .+.....+.+||||||||++||||++++|+|+|||||
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------~-~~~~~~~~~~LS~G~~qrv~laral~~~p~vllLDEP 152 (230)
T TIGR02770 81 MGNHAIETLRSLGKLSKQARALILEALEAVGLPD-------P-EEVLKKYPFQLSGGMLQRVMIALALLLEPPFLIADEP 152 (230)
T ss_pred HHHHHHHHHHHcCccHHHHHHHHHHHHHHcCCCc-------h-HHHHhCChhhcCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 9999864321 1 1122344445444431 0 1233456679999999999999999999999999999
Q ss_pred CCCcCHHHHHHHHHHHHHHH
Q psy1503 241 LSAVDMHVGKHLFEDCISGC 260 (265)
Q Consensus 241 ~s~LD~~~~~~i~~~~i~~~ 260 (265)
|++||..+.+.+++ .+..+
T Consensus 153 t~~LD~~~~~~l~~-~l~~~ 171 (230)
T TIGR02770 153 TTDLDVVNQARVLK-LLREL 171 (230)
T ss_pred ccccCHHHHHHHHH-HHHHH
Confidence 99999999888755 44444
No 302
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6.2e-34 Score=274.97 Aligned_cols=161 Identities=16% Similarity=0.310 Sum_probs=125.0
Q ss_pred CcEEEEeEEEEeCCCCCCcceeeceEEEcCCcEEEEEcCCCChHHHHHHHHhcCcCCCccEEEEcCe-------------
Q psy1503 87 GHVSLDNVTAQWSLQNADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSLGGT------------- 153 (265)
Q Consensus 87 ~~i~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g~------------- 153 (265)
..++++|+++.|. .+|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.
T Consensus 264 ~~l~~~~l~~~~~-----~~l~~isl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~ 338 (510)
T PRK09700 264 TVFEVRNVTSRDR-----KKVRDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDKRAGGEIRLNGKDISPRSPLDAVKK 338 (510)
T ss_pred cEEEEeCccccCC-----CcccceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCEECCCCCHHHHHHC
Confidence 3699999998762 2799999999999999999999999999999999999999999999872
Q ss_pred -EEEEecCC---CCcc-ccHHHHHhcCCcc------------cHHHHHHHHHHhcchhHHhcCCCCCc-cccCCCCCCCC
Q psy1503 154 -VSYASQEP---WIFA-ATIRQNILFGLPY------------LRRRYADVIRVCALQDDFDSLPNGDF-TVVGERGASLS 215 (265)
Q Consensus 154 -i~~v~Q~~---~l~~-~ti~eni~~~~~~------------~~~~~~~~~~~~~l~~~i~~l~~g~~-t~vg~~g~~LS 215 (265)
++|++|++ .+++ .|+.||+.++... ...... ....+.++.+ +.. ........+||
T Consensus 339 ~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~l~~~--~l~~~~~~~~~~~LS 411 (510)
T PRK09700 339 GMAYITESRRDNGFFPNFSIAQNMAISRSLKDGGYKGAMGLFHEVDEQ-----RTAENQRELL--ALKCHSVNQNITELS 411 (510)
T ss_pred CcEEccCccccCCCcCCCcHHHHhccccccccccccccccccChHHHH-----HHHHHHHHhc--CCCCCCccCccccCC
Confidence 79999984 4665 5999999875321 010000 0111222222 111 12345567899
Q ss_pred HHHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHH
Q psy1503 216 GGQKARINLARAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGC 260 (265)
Q Consensus 216 gGqrqRialARal~~~~~illLDEp~s~LD~~~~~~i~~~~i~~~ 260 (265)
||||||++|||||+.+|+|+||||||++||+.+.+.+++ .+..+
T Consensus 412 gGq~qrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~-~l~~l 455 (510)
T PRK09700 412 GGNQQKVLISKWLCCCPEVIIFDEPTRGIDVGAKAEIYK-VMRQL 455 (510)
T ss_pred hHHHHHHHHHHHHhcCCCEEEECCCCCCcCHHHHHHHHH-HHHHH
Confidence 999999999999999999999999999999999988865 44443
No 303
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=100.00 E-value=2.6e-33 Score=228.13 Aligned_cols=109 Identities=36% Similarity=0.618 Sum_probs=102.1
Q ss_pred EEEEeEEEEeCCCCCCcceeeceEEEcCCcEEEEEcCCCChHHHHHHHHhcCcCCCccEEEEcCe--EEEEecCCCCccc
Q psy1503 89 VSLDNVTAQWSLQNADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSLGGT--VSYASQEPWIFAA 166 (265)
Q Consensus 89 i~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g~--i~~v~Q~~~l~~~ 166 (265)
++++|++++|+. .++++++||++++||+++|+||||||||||+++|+|+++|++|+|.++|. ++|++|
T Consensus 1 l~~~~l~~~~~~---~~~l~~~~~~~~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~~~~~i~~~~~------- 70 (144)
T cd03221 1 IELENLSKTYGG---KLLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIVTWGSTVKIGYFEQ------- 70 (144)
T ss_pred CEEEEEEEEECC---ceEEEeeEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCeEEEEEEcc-------
Confidence 468999999963 36899999999999999999999999999999999999999999999984 888888
Q ss_pred cHHHHHhcCCcccHHHHHHHHHHhcchhHHhcCCCCCccccCCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCcCH
Q psy1503 167 TIRQNILFGLPYLRRRYADVIRVCALQDDFDSLPNGDFTVVGERGASLSGGQKARINLARAVYKNADIYLLDDPLSAVDM 246 (265)
Q Consensus 167 ti~eni~~~~~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~vg~~g~~LSgGqrqRialARal~~~~~illLDEp~s~LD~ 246 (265)
||+||+||++||||++++|+++||||||++||+
T Consensus 71 -----------------------------------------------lS~G~~~rv~laral~~~p~illlDEP~~~LD~ 103 (144)
T cd03221 71 -----------------------------------------------LSGGEKMRLALAKLLLENPNLLLLDEPTNHLDL 103 (144)
T ss_pred -----------------------------------------------CCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCH
Confidence 999999999999999999999999999999999
Q ss_pred HHHHHHHH
Q psy1503 247 HVGKHLFE 254 (265)
Q Consensus 247 ~~~~~i~~ 254 (265)
.+...+.+
T Consensus 104 ~~~~~l~~ 111 (144)
T cd03221 104 ESIEALEE 111 (144)
T ss_pred HHHHHHHH
Confidence 99988755
No 304
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=100.00 E-value=2.2e-33 Score=267.20 Aligned_cols=160 Identities=24% Similarity=0.427 Sum_probs=130.4
Q ss_pred CCcEEEEeEEEEeCCC--------CCCcceeeceEEEcCCcEEEEEcCCCChHHHHHHHHhcCcCCCccEEEEcC-----
Q psy1503 86 KGHVSLDNVTAQWSLQ--------NADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSLGG----- 152 (265)
Q Consensus 86 ~~~i~~~~~~~~~~~~--------~~~~~l~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g----- 152 (265)
...++++|++++|... ....+++||||++++||++||||+||||||||.++|+|+.+|++|+|.++|
T Consensus 278 ~~ll~V~~l~k~y~~~~~~~~~~~~~~~Av~~VSf~l~~GE~lglVGeSGsGKSTlar~i~gL~~P~~G~i~~~g~~~~~ 357 (539)
T COG1123 278 EPLLSVRNLSKRYGSRKGLFVRERGEVKAVDDVSFDLREGETLGLVGESGSGKSTLARILAGLLPPSSGSIIFDGQDLDL 357 (539)
T ss_pred CceeEeeeeeeeeccccccccccccceeeeeeeeeEecCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEEeCccccc
Confidence 4568899999999742 123579999999999999999999999999999999999999999999987
Q ss_pred ----------eEEEEecCCC--Ccc-ccHHHHHhcCCc----c----cHHHHHHHHHHhcchhHHhcCCCCCccccCCCC
Q psy1503 153 ----------TVSYASQEPW--IFA-ATIRQNILFGLP----Y----LRRRYADVIRVCALQDDFDSLPNGDFTVVGERG 211 (265)
Q Consensus 153 ----------~i~~v~Q~~~--l~~-~ti~eni~~~~~----~----~~~~~~~~~~~~~l~~~i~~l~~g~~t~vg~~g 211 (265)
.+-+++|+|. |.+ .||.++|.-... . ..+++.+.++..+|... .....+
T Consensus 358 ~~~~~~~~r~~~QmvFQdp~~SLnPr~tV~~~i~epL~~~~~~~~~~~~~rv~~ll~~VgL~~~----------~l~ryP 427 (539)
T COG1123 358 TGGELRRLRRRIQMVFQDPYSSLNPRMTVGDILAEPLRIHGGGSGAERRARVAELLELVGLPPE----------FLDRYP 427 (539)
T ss_pred ccchhhhhhhheEEEEeCcccccCccccHHHHHHhHHhhhcccchHHHHHHHHHHHHHcCCCHH----------HHhcCc
Confidence 2789999986 554 599999874321 1 12234455666666542 123445
Q ss_pred CCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHH
Q psy1503 212 ASLSGGQKARINLARAVYKNADIYLLDDPLSAVDMHVGKHLFED 255 (265)
Q Consensus 212 ~~LSgGqrqRialARal~~~~~illLDEp~s~LD~~~~~~i~~~ 255 (265)
.+||||||||+||||||+.+|+++|+|||||+||+.+..+|++-
T Consensus 428 ~elSGGQrQRvaIARALa~~P~lli~DEp~SaLDvsvqa~VlnL 471 (539)
T COG1123 428 HELSGGQRQRVAIARALALEPKLLILDEPVSALDVSVQAQVLNL 471 (539)
T ss_pred hhcCcchhHHHHHHHHHhcCCCEEEecCCccccCHHHHHHHHHH
Confidence 69999999999999999999999999999999999999999763
No 305
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=100.00 E-value=3.5e-33 Score=272.42 Aligned_cols=155 Identities=23% Similarity=0.400 Sum_probs=126.7
Q ss_pred CcEEEEeEEEEeCCCCCCcceeeceEEEcCCcEEEEEcCCCChHHHHHHHHhcCcCCCccEEEEcC--eEEEEecCC-CC
Q psy1503 87 GHVSLDNVTAQWSLQNADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSLGG--TVSYASQEP-WI 163 (265)
Q Consensus 87 ~~i~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g--~i~~v~Q~~-~l 163 (265)
..++++|++++|++ .++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.+++ .+||++|++ .+
T Consensus 323 ~~l~~~~l~~~~~~---~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~~~~i~~v~q~~~~~ 399 (556)
T PRK11819 323 KVIEAENLSKSFGD---RLLIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQPDSGTIKIGETVKLAYVDQSRDAL 399 (556)
T ss_pred eEEEEEeEEEEECC---eeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCceEEEEEeCchhhc
Confidence 47999999999963 4699999999999999999999999999999999999999999999966 499999997 56
Q ss_pred cc-ccHHHHHhcCCcc-----cHHHHHHHHHHhcchhHHhcCCCCCccccCCCCCCCCHHHHHHHHHHHHHccCCCEEEE
Q psy1503 164 FA-ATIRQNILFGLPY-----LRRRYADVIRVCALQDDFDSLPNGDFTVVGERGASLSGGQKARINLARAVYKNADIYLL 237 (265)
Q Consensus 164 ~~-~ti~eni~~~~~~-----~~~~~~~~~~~~~l~~~i~~l~~g~~t~vg~~g~~LSgGqrqRialARal~~~~~illL 237 (265)
++ .|++||+.++... ...+...+++..++... .......+||||||||++||||++.+|+++||
T Consensus 400 ~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~----------~~~~~~~~LSgG~~qrv~la~al~~~p~lllL 469 (556)
T PRK11819 400 DPNKTVWEEISGGLDIIKVGNREIPSRAYVGRFNFKGG----------DQQKKVGVLSGGERNRLHLAKTLKQGGNVLLL 469 (556)
T ss_pred CCCCCHHHHHHhhcccccccccHHHHHHHHHhCCCChh----------HhcCchhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 65 5999999875321 11122233333333211 12345578999999999999999999999999
Q ss_pred eCCCCCcCHHHHHHHHH
Q psy1503 238 DDPLSAVDMHVGKHLFE 254 (265)
Q Consensus 238 DEp~s~LD~~~~~~i~~ 254 (265)
||||++||+.+...+.+
T Consensus 470 DEPt~~LD~~~~~~l~~ 486 (556)
T PRK11819 470 DEPTNDLDVETLRALEE 486 (556)
T ss_pred cCCCCCCCHHHHHHHHH
Confidence 99999999999988865
No 306
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=7.8e-34 Score=252.30 Aligned_cols=159 Identities=25% Similarity=0.450 Sum_probs=136.9
Q ss_pred cEEEEeEEEEeCCCCC---------------------CcceeeceEEEcCCcEEEEEcCCCChHHHHHHHHhcCcCCCcc
Q psy1503 88 HVSLDNVTAQWSLQNA---------------------DLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSG 146 (265)
Q Consensus 88 ~i~~~~~~~~~~~~~~---------------------~~~l~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G 146 (265)
.|+++|+++-|+.... ...++|+||+|+.||+..|.|-||||||||++++.|+++|++|
T Consensus 4 ~i~i~nv~kiFG~~~~~a~~~~~~G~~k~ei~~~tg~vvGv~~~sl~v~~GeIfViMGLSGSGKSTLvR~~NrLiept~G 83 (386)
T COG4175 4 KIEIKNVYKIFGKNPKRALKLLDQGKSKAEILKKTGLVVGVNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPTRG 83 (386)
T ss_pred eEEeecceeecccCHHHHHHHHHcCCcHHHHHHhhCcEEeeccceeeecCCeEEEEEecCCCCHHHHHHHHhccCCCCCc
Confidence 5788999888864210 1348999999999999999999999999999999999999999
Q ss_pred EEEEcCe-----------------EEEEecCCCCcc-ccHHHHHhcCCcc-------cHHHHHHHHHHhcchhHHhcCCC
Q psy1503 147 KVSLGGT-----------------VSYASQEPWIFA-ATIRQNILFGLPY-------LRRRYADVIRVCALQDDFDSLPN 201 (265)
Q Consensus 147 ~i~~~g~-----------------i~~v~Q~~~l~~-~ti~eni~~~~~~-------~~~~~~~~~~~~~l~~~i~~l~~ 201 (265)
+|.++|. +++|+|..-|++ .||.||+.||.+. .+++..+.++.++|..+-.+.|
T Consensus 84 ~ilv~g~di~~~~~~~Lr~~Rr~~~sMVFQ~FaLlPhrtVl~Nv~fGLev~Gv~~~er~~~a~~~l~~VgL~~~~~~yp- 162 (386)
T COG4175 84 EILVDGKDIAKLSAAELRELRRKKISMVFQSFALLPHRTVLENVAFGLEVQGVPKAEREERALEALELVGLEGYADKYP- 162 (386)
T ss_pred eEEECCcchhcCCHHHHHHHHhhhhhhhhhhhccccchhHhhhhhcceeecCCCHHHHHHHHHHHHHHcCchhhhhcCc-
Confidence 9999983 999999999997 5999999999753 1234456677788877766666
Q ss_pred CCccccCCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHH
Q psy1503 202 GDFTVVGERGASLSGGQKARINLARAVYKNADIYLLDDPLSAVDMHVGKHLFEDCI 257 (265)
Q Consensus 202 g~~t~vg~~g~~LSgGqrqRialARal~~~~~illLDEp~s~LD~~~~~~i~~~~i 257 (265)
.+||||+||||.|||||..+|+|+|+|||||+|||-.+.++-++.+
T Consensus 163 ----------~eLSGGMqQRVGLARAla~~~~IlLMDEaFSALDPLIR~~mQdeLl 208 (386)
T COG4175 163 ----------NELSGGMQQRVGLARALANDPDILLMDEAFSALDPLIRTEMQDELL 208 (386)
T ss_pred ----------ccccchHHHHHHHHHHHccCCCEEEecCchhhcChHHHHHHHHHHH
Confidence 5899999999999999999999999999999999999998876665
No 307
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=100.00 E-value=3.9e-33 Score=271.89 Aligned_cols=155 Identities=23% Similarity=0.388 Sum_probs=126.6
Q ss_pred CcEEEEeEEEEeCCCCCCcceeeceEEEcCCcEEEEEcCCCChHHHHHHHHhcCcCCCccEEEEcC--eEEEEecCCC-C
Q psy1503 87 GHVSLDNVTAQWSLQNADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSLGG--TVSYASQEPW-I 163 (265)
Q Consensus 87 ~~i~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g--~i~~v~Q~~~-l 163 (265)
..++++|++++|++ .++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.+++ .++|++|++. +
T Consensus 321 ~~l~~~~l~~~~~~---~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~~~~~i~~v~q~~~~~ 397 (552)
T TIGR03719 321 KVIEAENLSKGFGD---KLLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQPDSGTIKIGETVKLAYVDQSRDAL 397 (552)
T ss_pred eEEEEeeEEEEECC---eeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEECCceEEEEEeCCcccc
Confidence 47999999999953 4699999999999999999999999999999999999999999999965 4999999973 6
Q ss_pred cc-ccHHHHHhcCCcc---c--HHHHHHHHHHhcchhHHhcCCCCCccccCCCCCCCCHHHHHHHHHHHHHccCCCEEEE
Q psy1503 164 FA-ATIRQNILFGLPY---L--RRRYADVIRVCALQDDFDSLPNGDFTVVGERGASLSGGQKARINLARAVYKNADIYLL 237 (265)
Q Consensus 164 ~~-~ti~eni~~~~~~---~--~~~~~~~~~~~~l~~~i~~l~~g~~t~vg~~g~~LSgGqrqRialARal~~~~~illL 237 (265)
++ .|+.||+.++... . ..+..++++.+++... .......+||||||||++|||||+.+|+++||
T Consensus 398 ~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~----------~~~~~~~~LSgGe~qrv~la~al~~~p~lllL 467 (552)
T TIGR03719 398 DPNKTVWEEISGGLDIIQLGKREVPSRAYVGRFNFKGS----------DQQKKVGQLSGGERNRVHLAKTLKSGGNVLLL 467 (552)
T ss_pred CCCCcHHHHHHhhccccccCcchHHHHHHHHhCCCChh----------HhcCchhhCCHHHHHHHHHHHHHhhCCCEEEE
Confidence 64 5999999876421 1 1122233333333211 12345678999999999999999999999999
Q ss_pred eCCCCCcCHHHHHHHHH
Q psy1503 238 DDPLSAVDMHVGKHLFE 254 (265)
Q Consensus 238 DEp~s~LD~~~~~~i~~ 254 (265)
||||++||+.+...+.+
T Consensus 468 DEPt~~LD~~~~~~l~~ 484 (552)
T TIGR03719 468 DEPTNDLDVETLRALEE 484 (552)
T ss_pred eCCCCCCCHHHHHHHHH
Confidence 99999999999988865
No 308
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=100.00 E-value=2.5e-33 Score=271.91 Aligned_cols=162 Identities=22% Similarity=0.394 Sum_probs=128.0
Q ss_pred CcEEEEeEEEEeCCC--------CCCcceeeceEEEcCCcEEEEEcCCCChHHHHHHHHhcCcCCCccEEEEcC------
Q psy1503 87 GHVSLDNVTAQWSLQ--------NADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSLGG------ 152 (265)
Q Consensus 87 ~~i~~~~~~~~~~~~--------~~~~~l~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g------ 152 (265)
..++++|++++|+.. ....+|+|+||+|++|++++|+||||||||||+++|+|++ |++|+|.++|
T Consensus 274 ~~l~~~~l~~~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~-~~~G~i~~~g~~i~~~ 352 (529)
T PRK15134 274 PLLDVEQLQVAFPIRKGILKRTVDHNVVVKNISFTLRPGETLGLVGESGSGKSTTGLALLRLI-NSQGEIWFDGQPLHNL 352 (529)
T ss_pred CcccccCcEEEeecCccccccccccceeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhCcC-CCCcEEEECCEEcccc
Confidence 468999999999521 1246899999999999999999999999999999999998 4899999987
Q ss_pred ----------eEEEEecCC--CCcc-ccHHHHHhcCCc-----cc----HHHHHHHHHHhcchhHHhcCCCCCccccCCC
Q psy1503 153 ----------TVSYASQEP--WIFA-ATIRQNILFGLP-----YL----RRRYADVIRVCALQDDFDSLPNGDFTVVGER 210 (265)
Q Consensus 153 ----------~i~~v~Q~~--~l~~-~ti~eni~~~~~-----~~----~~~~~~~~~~~~l~~~i~~l~~g~~t~vg~~ 210 (265)
.++|++|++ .+++ .|++||+.++.. .. .++..++++..++... .....
T Consensus 353 ~~~~~~~~~~~i~~v~q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~----------~~~~~ 422 (529)
T PRK15134 353 NRRQLLPVRHRIQVVFQDPNSSLNPRLNVLQIIEEGLRVHQPTLSAAQREQQVIAVMEEVGLDPE----------TRHRY 422 (529)
T ss_pred chhhHHHhhhceEEEEeCchhhcCCcccHHHHHHHHHHhccccCChHHHHHHHHHHHHHcCCCHH----------HHhcC
Confidence 289999997 3665 599999986421 11 1223334444444311 12345
Q ss_pred CCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHH
Q psy1503 211 GASLSGGQKARINLARAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGC 260 (265)
Q Consensus 211 g~~LSgGqrqRialARal~~~~~illLDEp~s~LD~~~~~~i~~~~i~~~ 260 (265)
..+||||||||++|||||+.+|+++||||||++||+.+.+.+++ .+..+
T Consensus 423 ~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~-~l~~~ 471 (529)
T PRK15134 423 PAEFSGGQRQRIAIARALILKPSLIILDEPTSSLDKTVQAQILA-LLKSL 471 (529)
T ss_pred CccCCHHHHHHHHHHHHHhCCCCEEEeeCCccccCHHHHHHHHH-HHHHH
Confidence 57899999999999999999999999999999999999998865 44444
No 309
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.5e-33 Score=238.47 Aligned_cols=153 Identities=28% Similarity=0.469 Sum_probs=125.2
Q ss_pred cEEEEeEEEEeCCCCCCcceeeceEEEcCCcEEEEEcCCCChHHHHHHHHhcCcCCCccEEEEcCe-------------E
Q psy1503 88 HVSLDNVTAQWSLQNADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSLGGT-------------V 154 (265)
Q Consensus 88 ~i~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g~-------------i 154 (265)
+|+.+|++++.. .+.+|+++||++++||+++|+||||||||||++.|+|++.|++|++.++|. -
T Consensus 1 mi~a~nls~~~~---Gr~ll~~vsl~~~pGev~ailGPNGAGKSTlLk~LsGel~p~~G~v~~~g~~l~~~~~~~lA~~r 77 (259)
T COG4559 1 MIRAENLSYSLA---GRRLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPDSGEVTLNGVPLNSWPPEELARHR 77 (259)
T ss_pred CeeeeeeEEEee---cceeccCcceeccCCcEEEEECCCCccHHHHHHHhhCccCCCCCeEeeCCcChhhCCHHHHHHHh
Confidence 478899998875 356899999999999999999999999999999999999999999999984 7
Q ss_pred EEEecCCCC-ccccHHHHHhcCCc-c----c--HHH--HHHHHHHhcchhHHhcCCCCCccccCCCCCCCCHHHHHHHHH
Q psy1503 155 SYASQEPWI-FAATIRQNILFGLP-Y----L--RRR--YADVIRVCALQDDFDSLPNGDFTVVGERGASLSGGQKARINL 224 (265)
Q Consensus 155 ~~v~Q~~~l-~~~ti~eni~~~~~-~----~--~~~--~~~~~~~~~l~~~i~~l~~g~~t~vg~~g~~LSgGqrqRial 224 (265)
+.+||+..+ |+.|++|.+.+|.- . . ++. ..+++.++.+. .+. +.....||||+||||.|
T Consensus 78 aVlpQ~s~laFpFtv~eVV~mGr~p~~~g~~~~e~~~i~~~ala~~d~~----~la-------~R~y~~LSGGEqQRVql 146 (259)
T COG4559 78 AVLPQNSSLAFPFTVQEVVQMGRIPHRSGREPEEDERIAAQALAATDLS----GLA-------GRDYRTLSGGEQQRVQL 146 (259)
T ss_pred hhcccCcccccceEHHHHHHhcccccccCCCchhhHHHHHHHHHHcChh----hhh-------ccchhhcCchHHHHHHH
Confidence 899999775 79999999999852 1 1 111 23444444433 222 23346899999999999
Q ss_pred HHHHcc------CCCEEEEeCCCCCcCHHHHHHHHH
Q psy1503 225 ARAVYK------NADIYLLDDPLSAVDMHVGKHLFE 254 (265)
Q Consensus 225 ARal~~------~~~illLDEp~s~LD~~~~~~i~~ 254 (265)
||.|.+ ++++++||||||+||.....++++
T Consensus 147 ARvLaQl~~~v~~~r~L~LDEPtsaLDi~HQ~~tl~ 182 (259)
T COG4559 147 ARVLAQLWPPVPSGRWLFLDEPTSALDIAHQHHTLR 182 (259)
T ss_pred HHHHHHccCCCCCCceEEecCCccccchHHHHHHHH
Confidence 999975 345899999999999999988876
No 310
>PRK03695 vitamin B12-transporter ATPase; Provisional
Probab=100.00 E-value=2.9e-33 Score=247.08 Aligned_cols=151 Identities=26% Similarity=0.405 Sum_probs=120.0
Q ss_pred EEEeEEEEeCCCCCCcceeeceEEEcCCcEEEEEcCCCChHHHHHHHHhcCcCCCccEEEEcCe-------------EEE
Q psy1503 90 SLDNVTAQWSLQNADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSLGGT-------------VSY 156 (265)
Q Consensus 90 ~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g~-------------i~~ 156 (265)
+++|+++. .+|+|+||+|++|++++|+||||||||||+++|+|+++ .+|+|.++|. ++|
T Consensus 2 ~~~~l~~~-------~~l~~vsl~i~~Gei~~l~G~nGsGKSTLl~~l~Gl~~-~~G~i~~~g~~i~~~~~~~~~~~i~~ 73 (248)
T PRK03695 2 QLNDVAVS-------TRLGPLSAEVRAGEILHLVGPNGAGKSTLLARMAGLLP-GSGSIQFAGQPLEAWSAAELARHRAY 73 (248)
T ss_pred cccccchh-------ceecceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCC-CCeEEEECCEecCcCCHHHHhhheEE
Confidence 46677763 16999999999999999999999999999999999986 5999999873 799
Q ss_pred EecCCCCc-cccHHHHHhcCCcc--c----HHHHHHHHHHhcchhHHhcCCCCCccccCCCCCCCCHHHHHHHHHHHHHc
Q psy1503 157 ASQEPWIF-AATIRQNILFGLPY--L----RRRYADVIRVCALQDDFDSLPNGDFTVVGERGASLSGGQKARINLARAVY 229 (265)
Q Consensus 157 v~Q~~~l~-~~ti~eni~~~~~~--~----~~~~~~~~~~~~l~~~i~~l~~g~~t~vg~~g~~LSgGqrqRialARal~ 229 (265)
++|++.++ ..|+++|+.++... . .+++.++++..++.+. .......||||||||++|||||+
T Consensus 74 v~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LS~G~~qrv~la~al~ 142 (248)
T PRK03695 74 LSQQQTPPFAMPVFQYLTLHQPDKTRTEAVASALNEVAEALGLDDK-----------LGRSVNQLSGGEWQRVRLAAVVL 142 (248)
T ss_pred ecccCccCCCccHHHHHHhcCccCCCcHHHHHHHHHHHHHcCCHhH-----------hcCCcccCCHHHHHHHHHHHHHh
Confidence 99998655 57999999876321 1 1233444555444332 23456789999999999999999
Q ss_pred c-------CCCEEEEeCCCCCcCHHHHHHHHHHHHHHH
Q psy1503 230 K-------NADIYLLDDPLSAVDMHVGKHLFEDCISGC 260 (265)
Q Consensus 230 ~-------~~~illLDEp~s~LD~~~~~~i~~~~i~~~ 260 (265)
. +|+++||||||++||+.+...+.+ .+..+
T Consensus 143 ~~~~~~~p~p~llllDEPt~~LD~~~~~~l~~-~L~~~ 179 (248)
T PRK03695 143 QVWPDINPAGQLLLLDEPMNSLDVAQQAALDR-LLSEL 179 (248)
T ss_pred ccccccCCCCCEEEEcCCcccCCHHHHHHHHH-HHHHH
Confidence 7 679999999999999999888754 44444
No 311
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=100.00 E-value=1.5e-33 Score=271.69 Aligned_cols=163 Identities=18% Similarity=0.298 Sum_probs=126.4
Q ss_pred CcEEEEeEEEEeCCCCCCcceeeceEEEcCCcEEEEEcCCCChHHHHHHHHhcCcCC-CccEEEEcCe------------
Q psy1503 87 GHVSLDNVTAQWSLQNADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRI-SSGKVSLGGT------------ 153 (265)
Q Consensus 87 ~~i~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~-~~G~i~~~g~------------ 153 (265)
..++++|++++|+......+++|+||+|++|++++|+||||||||||+++|+|+++| ++|+|.++|.
T Consensus 256 ~~l~~~~l~~~~~~~~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~~G~i~~~g~~~~~~~~~~~~~ 335 (500)
T TIGR02633 256 VILEARNLTCWDVINPHRKRVDDVSFSLRRGEILGVAGLVGAGRTELVQALFGAYPGKFEGNVFINGKPVDIRNPAQAIR 335 (500)
T ss_pred ceEEEeCCcccccccccccccccceeEEeCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCeEEEECCEECCCCCHHHHHh
Confidence 369999999998421124589999999999999999999999999999999999995 8999999772
Q ss_pred --EEEEecCC---CCcc-ccHHHHHhcCCc--c------cH----HHHHHHHHHhcchhHHhcCCCCCccccCCCCCCCC
Q psy1503 154 --VSYASQEP---WIFA-ATIRQNILFGLP--Y------LR----RRYADVIRVCALQDDFDSLPNGDFTVVGERGASLS 215 (265)
Q Consensus 154 --i~~v~Q~~---~l~~-~ti~eni~~~~~--~------~~----~~~~~~~~~~~l~~~i~~l~~g~~t~vg~~g~~LS 215 (265)
++|++|++ .+++ .|+++|+.++.. . .. ++..++++.+++.. .........||
T Consensus 336 ~~i~~v~q~~~~~~l~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~----------~~~~~~~~~LS 405 (500)
T TIGR02633 336 AGIAMVPEDRKRHGIVPILGVGKNITLSVLKSFCFKMRIDAAAELQIIGSAIQRLKVKT----------ASPFLPIGRLS 405 (500)
T ss_pred CCCEEcCcchhhCCcCCCCCHHHHhcchhhhhhccCCcCCHHHHHHHHHHHHHhcCccC----------CCccCccccCC
Confidence 89999996 4665 599999987521 0 11 11222223322210 01234567899
Q ss_pred HHHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHH
Q psy1503 216 GGQKARINLARAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGC 260 (265)
Q Consensus 216 gGqrqRialARal~~~~~illLDEp~s~LD~~~~~~i~~~~i~~~ 260 (265)
||||||++|||||+.+|+++||||||++||+.+...+++ .+..+
T Consensus 406 gGqkqrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~-~l~~l 449 (500)
T TIGR02633 406 GGNQQKAVLAKMLLTNPRVLILDEPTRGVDVGAKYEIYK-LINQL 449 (500)
T ss_pred HHHHHHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHH-HHHHH
Confidence 999999999999999999999999999999999988865 44443
No 312
>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=9.3e-34 Score=234.58 Aligned_cols=159 Identities=23% Similarity=0.401 Sum_probs=132.6
Q ss_pred CcEEEEeEEEEeCCCCCCcceeeceEEEcCCcEEEEEcCCCChHHHHHHHHhcCcCCCccEEEEcCe-------------
Q psy1503 87 GHVSLDNVTAQWSLQNADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSLGGT------------- 153 (265)
Q Consensus 87 ~~i~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g~------------- 153 (265)
..++++|+.++|+. ..+|++||++-++|+++.|+|.|||||||+++||.=+..|+.|.|.++|.
T Consensus 5 ~~l~v~dlHK~~G~---~eVLKGvSL~A~~GdVisIIGsSGSGKSTfLRCiN~LE~P~~G~I~v~geei~~k~~~~G~l~ 81 (256)
T COG4598 5 NALEVEDLHKRYGE---HEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSIRVNGEEIRLKRDKDGQLK 81 (256)
T ss_pred cceehhHHHhhccc---chhhcceeeecCCCCEEEEecCCCCchhHHHHHHHhhcCCCCceEEECCeEEEeeeCCCCCee
Confidence 36899999999964 45899999999999999999999999999999999999999999999983
Q ss_pred -------------EEEEecCCCCcc-ccHHHHHhcC------Cccc--HHHHHHHHHHhcchhHHhcCCCCCccccCCCC
Q psy1503 154 -------------VSYASQEPWIFA-ATIRQNILFG------LPYL--RRRYADVIRVCALQDDFDSLPNGDFTVVGERG 211 (265)
Q Consensus 154 -------------i~~v~Q~~~l~~-~ti~eni~~~------~~~~--~~~~~~~~~~~~l~~~i~~l~~g~~t~vg~~g 211 (265)
.++|+|+..|++ .|+.||+.-+ .+.. .++.+..+..+++.+.-+..|
T Consensus 82 ~ad~~q~~r~Rs~L~mVFQ~FNLWsHmtvLeNViEaPvhVLg~~k~ea~e~Ae~~L~kVGi~ek~~~YP----------- 150 (256)
T COG4598 82 PADKRQLQRLRTRLGMVFQHFNLWSHMTVLENVIEAPVHVLGVSKAEAIERAEKYLAKVGIAEKADAYP----------- 150 (256)
T ss_pred eCCHHHHHHHHHHhhHhhhhcchhHHHHHHHHHHhcchHhhcCCHHHHHHHHHHHHHHhCchhhhhcCc-----------
Confidence 799999999996 6999998643 2211 233445566677766555544
Q ss_pred CCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHH
Q psy1503 212 ASLSGGQKARINLARAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGC 260 (265)
Q Consensus 212 ~~LSgGqrqRialARal~~~~~illLDEp~s~LD~~~~~~i~~~~i~~~ 260 (265)
..|||||+||++|||||+.+|+++++|||||+||++..-+++. ++..+
T Consensus 151 ~~LSGGQQQR~aIARaLameP~vmLFDEPTSALDPElVgEVLk-v~~~L 198 (256)
T COG4598 151 AHLSGGQQQRVAIARALAMEPEVMLFDEPTSALDPELVGEVLK-VMQDL 198 (256)
T ss_pred cccCchHHHHHHHHHHHhcCCceEeecCCcccCCHHHHHHHHH-HHHHH
Confidence 6899999999999999999999999999999999998877754 44443
No 313
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=100.00 E-value=8.4e-33 Score=261.54 Aligned_cols=163 Identities=23% Similarity=0.345 Sum_probs=131.6
Q ss_pred CcEEEEeEEEEeCCCCCCcceeeceEEEcCCcEEEEEcCCCChHHHHHHHHhcCcCCCccEEEEcCe-------------
Q psy1503 87 GHVSLDNVTAQWSLQNADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSLGGT------------- 153 (265)
Q Consensus 87 ~~i~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g~------------- 153 (265)
..++++|++++|+. ..+|+++||++.+||++|++|.||||||||+|+|+|.|+|++|+|.++|+
T Consensus 7 ~ll~~~~i~K~Fgg---V~AL~~v~l~v~~GEV~aL~GeNGAGKSTLmKiLsGv~~p~~G~I~~~G~~~~~~sp~~A~~~ 83 (500)
T COG1129 7 PLLELRGISKSFGG---VKALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPDSGEILIDGKPVAFSSPRDALAA 83 (500)
T ss_pred ceeeeecceEEcCC---ceeeccceeEEeCceEEEEecCCCCCHHHHHHHHhCcccCCCceEEECCEEccCCCHHHHHhC
Confidence 36899999999974 46899999999999999999999999999999999999999999999995
Q ss_pred -EEEEecCCCCcc-ccHHHHHhcCCccc-------HHHHHHHHHHhcchhHHhcCCCCCccccCCCCCCCCHHHHHHHHH
Q psy1503 154 -VSYASQEPWIFA-ATIRQNILFGLPYL-------RRRYADVIRVCALQDDFDSLPNGDFTVVGERGASLSGGQKARINL 224 (265)
Q Consensus 154 -i~~v~Q~~~l~~-~ti~eni~~~~~~~-------~~~~~~~~~~~~l~~~i~~l~~g~~t~vg~~g~~LSgGqrqRial 224 (265)
|+.|.|+..|++ .||.|||.+|.... ..++.+..+. .+..+....+ ......+||.||||.|+|
T Consensus 84 GI~~V~QEl~L~p~LsVaeNifLgre~~~~~g~id~~~m~~~A~~-----~l~~lg~~~~--~~~~v~~LsiaqrQ~VeI 156 (500)
T COG1129 84 GIATVHQELSLVPNLSVAENIFLGREPTRRFGLIDRKAMRRRARE-----LLARLGLDID--PDTLVGDLSIAQRQMVEI 156 (500)
T ss_pred CcEEEeechhccCCccHHHHhhcccccccCCCccCHHHHHHHHHH-----HHHHcCCCCC--hhhhhhhCCHHHHHHHHH
Confidence 999999999996 59999999886432 2222221111 1222211101 234556899999999999
Q ss_pred HHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHH
Q psy1503 225 ARAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGC 260 (265)
Q Consensus 225 ARal~~~~~illLDEp~s~LD~~~~~~i~~~~i~~~ 260 (265)
|||+..+++|+|||||||+|+....+++|+ .+..+
T Consensus 157 ArAl~~~arllIlDEPTaaLt~~E~~~Lf~-~ir~L 191 (500)
T COG1129 157 ARALSFDARVLILDEPTAALTVKETERLFD-LIRRL 191 (500)
T ss_pred HHHHhcCCCEEEEcCCcccCCHHHHHHHHH-HHHHH
Confidence 999999999999999999999999999877 33443
No 314
>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=2.4e-33 Score=226.14 Aligned_cols=159 Identities=28% Similarity=0.469 Sum_probs=136.1
Q ss_pred cEEEEeEEEEeCCCCCCcceeeceEEEcCCcEEEEEcCCCChHHHHHHHHhcCcCCC---ccEEEEcCe-----------
Q psy1503 88 HVSLDNVTAQWSLQNADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRIS---SGKVSLGGT----------- 153 (265)
Q Consensus 88 ~i~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~---~G~i~~~g~----------- 153 (265)
++.++|++.+-++ .-.|-++||+|.+||++.+.||||||||||++-+.|.+.+. +|+++++++
T Consensus 2 ~l~l~nvsl~l~g---~cLLa~~n~Tia~GeivtlMGPSGcGKSTLls~~~G~La~~F~~~G~~~l~~~~l~~lPa~qRq 78 (213)
T COG4136 2 MLCLKNVSLRLPG---SCLLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLDMLPAAQRQ 78 (213)
T ss_pred ceeeeeeeecCCC---ceEEEeeeEEecCCcEEEEECCCCccHHHHHHHHHhhcccCcceeeEEEECCeeccccchhhhh
Confidence 5788999977653 45789999999999999999999999999999999999874 799999984
Q ss_pred EEEEecCCCCcc-ccHHHHHhcCCccc------HHHHHHHHHHhcchhHHhcCCCCCccccCCCCCCCCHHHHHHHHHHH
Q psy1503 154 VSYASQEPWIFA-ATIRQNILFGLPYL------RRRYADVIRVCALQDDFDSLPNGDFTVVGERGASLSGGQKARINLAR 226 (265)
Q Consensus 154 i~~v~Q~~~l~~-~ti~eni~~~~~~~------~~~~~~~~~~~~l~~~i~~l~~g~~t~vg~~g~~LSgGqrqRialAR 226 (265)
+|+++|++|||+ .+|.+|+.|..+.+ +.....+++..++...+.+.| .+||||||.||+|-|
T Consensus 79 ~GiLFQD~lLFphlsVg~Nl~fAlp~~~KG~aRr~~a~aAL~~~gL~g~f~~dP-----------~tlSGGQrARvaL~R 147 (213)
T COG4136 79 IGILFQDALLFPHLSVGQNLLFALPATLKGNARRNAANAALERSGLDGAFHQDP-----------ATLSGGQRARVALLR 147 (213)
T ss_pred eeeeecccccccccccccceEEecCcccccHHHHhhHHHHHHHhccchhhhcCh-----------hhcCcchHHHHHHHH
Confidence 999999999997 59999999976542 122345667777777666655 589999999999999
Q ss_pred HHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHH
Q psy1503 227 AVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGC 260 (265)
Q Consensus 227 al~~~~~illLDEp~s~LD~~~~~~i~~~~i~~~ 260 (265)
+|+..|+.++||||+|.||..-+.+..+.++..+
T Consensus 148 ~Lla~Pk~lLLDEPFS~LD~ALR~qfR~wVFs~~ 181 (213)
T COG4136 148 ALLAQPKALLLDEPFSRLDVALRDQFRQWVFSEV 181 (213)
T ss_pred HHHhCcceeeeCCchhHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999888877654
No 315
>PLN03211 ABC transporter G-25; Provisional
Probab=100.00 E-value=3e-33 Score=277.06 Aligned_cols=150 Identities=21% Similarity=0.418 Sum_probs=122.1
Q ss_pred CcceeeceEEEcCCcEEEEEcCCCChHHHHHHHHhcCcCCC--ccEEEEcCe---------EEEEecCCCCcc-ccHHHH
Q psy1503 104 DLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRIS--SGKVSLGGT---------VSYASQEPWIFA-ATIRQN 171 (265)
Q Consensus 104 ~~~l~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~--~G~i~~~g~---------i~~v~Q~~~l~~-~ti~en 171 (265)
+.+|+|+|+++++||++||+||||||||||+++|+|..+|+ +|+|.++|. ++||+|++.+++ .|++||
T Consensus 81 ~~iL~~vs~~i~~Ge~~aI~GpnGaGKSTLL~iLaG~~~~~~~sG~I~inG~~~~~~~~~~i~yv~Q~~~l~~~lTV~E~ 160 (659)
T PLN03211 81 RTILNGVTGMASPGEILAVLGPSGSGKSTLLNALAGRIQGNNFTGTILANNRKPTKQILKRTGFVTQDDILYPHLTVRET 160 (659)
T ss_pred CeeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCceeEEEEECCEECchhhccceEEECcccccCCcCCHHHH
Confidence 46899999999999999999999999999999999999885 899999984 899999999996 599999
Q ss_pred HhcCCc------ccHH----HHHHHHHHhcchhHHhcCCCCCccccCC-CCCCCCHHHHHHHHHHHHHccCCCEEEEeCC
Q psy1503 172 ILFGLP------YLRR----RYADVIRVCALQDDFDSLPNGDFTVVGE-RGASLSGGQKARINLARAVYKNADIYLLDDP 240 (265)
Q Consensus 172 i~~~~~------~~~~----~~~~~~~~~~l~~~i~~l~~g~~t~vg~-~g~~LSgGqrqRialARal~~~~~illLDEp 240 (265)
+.+... ...+ +.+++++..++ ++..+|.+|+ ....||||||||++|||||+++|+|++||||
T Consensus 161 l~~~a~~~~~~~~~~~~~~~~v~~~l~~lgL-------~~~~~t~vg~~~~~~LSgGerqRv~ia~aL~~~P~iLlLDEP 233 (659)
T PLN03211 161 LVFCSLLRLPKSLTKQEKILVAESVISELGL-------TKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEP 233 (659)
T ss_pred HHHHHHhCCCCCCCHHHHHHHHHHHHHHcCC-------hhhcCceeCCCCCCCcChhhhhHHHHHHHHHhCCCEEEEeCC
Confidence 987421 1111 12223333332 3334677765 4678999999999999999999999999999
Q ss_pred CCCcCHHHHHHHHHHHHHHHh
Q psy1503 241 LSAVDMHVGKHLFEDCISGCL 261 (265)
Q Consensus 241 ~s~LD~~~~~~i~~~~i~~~l 261 (265)
|++||+.++.++.+ .+..+.
T Consensus 234 tsgLD~~~~~~l~~-~L~~l~ 253 (659)
T PLN03211 234 TSGLDATAAYRLVL-TLGSLA 253 (659)
T ss_pred CCCcCHHHHHHHHH-HHHHHH
Confidence 99999999999866 444443
No 316
>PRK13409 putative ATPase RIL; Provisional
Probab=100.00 E-value=7.9e-33 Score=271.03 Aligned_cols=159 Identities=21% Similarity=0.263 Sum_probs=131.2
Q ss_pred CcEEEEeEEEEeCCCCCCcceeeceEEEcCCcEEEEEcCCCChHHHHHHHHhcCcCCCccEEEEcCeEEEEecCCCCc-c
Q psy1503 87 GHVSLDNVTAQWSLQNADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSLGGTVSYASQEPWIF-A 165 (265)
Q Consensus 87 ~~i~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g~i~~v~Q~~~l~-~ 165 (265)
..++++|++++|+. ..|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++-.++|+||++.++ +
T Consensus 339 ~~l~~~~ls~~~~~----~~l~~~s~~i~~Geiv~l~G~NGsGKSTLlk~L~Gl~~p~~G~I~~~~~i~y~~Q~~~~~~~ 414 (590)
T PRK13409 339 TLVEYPDLTKKLGD----FSLEVEGGEIYEGEVIGIVGPNGIGKTTFAKLLAGVLKPDEGEVDPELKISYKPQYIKPDYD 414 (590)
T ss_pred eEEEEcceEEEECC----EEEEecceEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEeeeEEEecccccCCCC
Confidence 46899999999953 259999999999999999999999999999999999999999999876799999998765 5
Q ss_pred ccHHHHHhcCCc-cc-HHHHHHHHHHhcchhHHhcCCCCCccccCCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCC
Q psy1503 166 ATIRQNILFGLP-YL-RRRYADVIRVCALQDDFDSLPNGDFTVVGERGASLSGGQKARINLARAVYKNADIYLLDDPLSA 243 (265)
Q Consensus 166 ~ti~eni~~~~~-~~-~~~~~~~~~~~~l~~~i~~l~~g~~t~vg~~g~~LSgGqrqRialARal~~~~~illLDEp~s~ 243 (265)
.|++||+.++.. .. .....++++..++.+.. .....+||||||||++|||||+++|++|||||||++
T Consensus 415 ~tv~e~l~~~~~~~~~~~~~~~~L~~l~l~~~~-----------~~~~~~LSGGe~QRvaiAraL~~~p~llLLDEPt~~ 483 (590)
T PRK13409 415 GTVEDLLRSITDDLGSSYYKSEIIKPLQLERLL-----------DKNVKDLSGGELQRVAIAACLSRDADLYLLDEPSAH 483 (590)
T ss_pred CcHHHHHHHHhhhcChHHHHHHHHHHCCCHHHH-----------hCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCccC
Confidence 699999987521 11 22334555555554333 244568999999999999999999999999999999
Q ss_pred cCHHHHHHHHHHHHHHHh
Q psy1503 244 VDMHVGKHLFEDCISGCL 261 (265)
Q Consensus 244 LD~~~~~~i~~~~i~~~l 261 (265)
||+.+...+.+ .+..+.
T Consensus 484 LD~~~~~~l~~-~l~~l~ 500 (590)
T PRK13409 484 LDVEQRLAVAK-AIRRIA 500 (590)
T ss_pred CCHHHHHHHHH-HHHHHH
Confidence 99999988854 555543
No 317
>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein.
Probab=100.00 E-value=1.7e-33 Score=277.63 Aligned_cols=150 Identities=24% Similarity=0.391 Sum_probs=123.2
Q ss_pred CCcceeeceEEEcCCcEEEEEcCCCChHHHHHHHHhcCcCCC---ccEEEEcCe----------EEEEecCCCCcc-ccH
Q psy1503 103 ADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRIS---SGKVSLGGT----------VSYASQEPWIFA-ATI 168 (265)
Q Consensus 103 ~~~~l~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~---~G~i~~~g~----------i~~v~Q~~~l~~-~ti 168 (265)
.+++|+|+|+++++||+++|+||||||||||+++|+|..+|. +|+|.++|. ++||+|++++++ .||
T Consensus 37 ~~~iL~~vs~~i~~Ge~~aI~G~sGsGKSTLL~~L~g~~~~~~~~~G~i~~~g~~~~~~~~~~~i~yv~Q~~~~~~~lTV 116 (617)
T TIGR00955 37 RKHLLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPIDAKEMRAISAYVQQDDLFIPTLTV 116 (617)
T ss_pred ccccccCCEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECCHHHHhhhceeeccccccCccCcH
Confidence 467999999999999999999999999999999999999885 799999994 699999999996 599
Q ss_pred HHHHhcCCcc------cHHHHHHHHHHhcchhHHhc--CCCCCccccCCC--CCCCCHHHHHHHHHHHHHccCCCEEEEe
Q psy1503 169 RQNILFGLPY------LRRRYADVIRVCALQDDFDS--LPNGDFTVVGER--GASLSGGQKARINLARAVYKNADIYLLD 238 (265)
Q Consensus 169 ~eni~~~~~~------~~~~~~~~~~~~~l~~~i~~--l~~g~~t~vg~~--g~~LSgGqrqRialARal~~~~~illLD 238 (265)
+||+.|+... ..++ +. ...++.++. +.+..+|.+|+. +..||||||||++|||||+.+|++++||
T Consensus 117 ~e~l~f~~~~~~~~~~~~~~--~~---~~v~~~l~~lgL~~~~~t~vg~~~~~~~LSgGqrkRvsia~aL~~~p~vlllD 191 (617)
T TIGR00955 117 REHLMFQAHLRMPRRVTKKE--KR---ERVDEVLQALGLRKCANTRIGVPGRVKGLSGGERKRLAFASELLTDPPLLFCD 191 (617)
T ss_pred HHHHHHHHhcCCCCCCCHHH--HH---HHHHHHHHHcCchhcCcCccCCCCCCCCcCcchhhHHHHHHHHHcCCCEEEee
Confidence 9999986421 1111 11 111222222 334567899974 4789999999999999999999999999
Q ss_pred CCCCCcCHHHHHHHHHHHH
Q psy1503 239 DPLSAVDMHVGKHLFEDCI 257 (265)
Q Consensus 239 Ep~s~LD~~~~~~i~~~~i 257 (265)
||||+||+.++.++++.+-
T Consensus 192 EPtsgLD~~~~~~l~~~L~ 210 (617)
T TIGR00955 192 EPTSGLDSFMAYSVVQVLK 210 (617)
T ss_pred CCCcchhHHHHHHHHHHHH
Confidence 9999999999999977543
No 318
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=100.00 E-value=5.8e-33 Score=241.36 Aligned_cols=137 Identities=28% Similarity=0.421 Sum_probs=110.9
Q ss_pred EEEcCCcEEEEEcCCCChHHHHHHHHhcCcCCCccEEEEcCe--------EEEEecCCCC---ccccHHHHHhcCCc---
Q psy1503 112 ITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSLGGT--------VSYASQEPWI---FAATIRQNILFGLP--- 177 (265)
Q Consensus 112 l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g~--------i~~v~Q~~~l---~~~ti~eni~~~~~--- 177 (265)
|+|++|++++|+||||||||||+++|+|+++|++|+|.++|. ++|++|++.+ ++.|+.+|+.++..
T Consensus 1 l~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~ 80 (223)
T TIGR03771 1 LSADKGELLGLLGPNGAGKTTLLRAILGLIPPAKGTVKVAGASPGKGWRHIGYVPQRHEFAWDFPISVAHTVMSGRTGHI 80 (223)
T ss_pred CccCCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCccchHhhCcEEEecccccccCCCCccHHHHHHhcccccc
Confidence 578999999999999999999999999999999999999983 9999999876 34799999986521
Q ss_pred -----c---cHHHHHHHHHHhcchhHHhcCCCCCccccCCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHH
Q psy1503 178 -----Y---LRRRYADVIRVCALQDDFDSLPNGDFTVVGERGASLSGGQKARINLARAVYKNADIYLLDDPLSAVDMHVG 249 (265)
Q Consensus 178 -----~---~~~~~~~~~~~~~l~~~i~~l~~g~~t~vg~~g~~LSgGqrqRialARal~~~~~illLDEp~s~LD~~~~ 249 (265)
. ..++..++++.+++.+.. .....+||||||||++|||||+++|+++||||||++||+.+.
T Consensus 81 ~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LS~G~~qrv~laral~~~p~llilDEP~~~LD~~~~ 149 (223)
T TIGR03771 81 GWLRRPCVADFAAVRDALRRVGLTELA-----------DRPVGELSGGQRQRVLVARALATRPSVLLLDEPFTGLDMPTQ 149 (223)
T ss_pred ccccCCcHHHHHHHHHHHHHhCCchhh-----------cCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHH
Confidence 0 112334445555543322 334568999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHH
Q psy1503 250 KHLFEDCISGC 260 (265)
Q Consensus 250 ~~i~~~~i~~~ 260 (265)
..+.+. +..+
T Consensus 150 ~~l~~~-l~~~ 159 (223)
T TIGR03771 150 ELLTEL-FIEL 159 (223)
T ss_pred HHHHHH-HHHH
Confidence 988664 4444
No 319
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=100.00 E-value=6.1e-33 Score=266.79 Aligned_cols=160 Identities=23% Similarity=0.292 Sum_probs=125.1
Q ss_pred CcEEEEeEEEEeCCCCCCcceeeceEEEcCCcEEEEEcCCCChHHHHHHHHhcCcCC-CccEEEEcCe------------
Q psy1503 87 GHVSLDNVTAQWSLQNADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRI-SSGKVSLGGT------------ 153 (265)
Q Consensus 87 ~~i~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~-~~G~i~~~g~------------ 153 (265)
..++++|++++|++ ..+|+|+||+|++|++++|+||||||||||+++|+|+.+| ++|+|.++|.
T Consensus 259 ~~l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~G~~~~~~~G~i~~~g~~~~~~~~~~~~~ 335 (490)
T PRK10938 259 PRIVLNNGVVSYND---RPILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITGDHPQGYSNDLTLFGRRRGSGETIWDIK 335 (490)
T ss_pred ceEEEeceEEEECC---eeEEeeceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCcccCCeEEEecccCCCCCCHHHHH
Confidence 46999999999963 4589999999999999999999999999999999998876 6999999762
Q ss_pred --EEEEecCCCCcc---ccHHHHHhcCCc--------cc---HHHHHHHHHHhcchhHHhcCCCCCccccCCCCCCCCHH
Q psy1503 154 --VSYASQEPWIFA---ATIRQNILFGLP--------YL---RRRYADVIRVCALQDDFDSLPNGDFTVVGERGASLSGG 217 (265)
Q Consensus 154 --i~~v~Q~~~l~~---~ti~eni~~~~~--------~~---~~~~~~~~~~~~l~~~i~~l~~g~~t~vg~~g~~LSgG 217 (265)
++|++|++.++. .++.+++.++.. .. .++..++++.+++.+. ....+..+||||
T Consensus 336 ~~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~----------~~~~~~~~LSgG 405 (490)
T PRK10938 336 KHIGYVSSSLHLDYRVSTSVRNVILSGFFDSIGIYQAVSDRQQKLAQQWLDILGIDKR----------TADAPFHSLSWG 405 (490)
T ss_pred hhceEECHHHHhhcccCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCchh----------hccCchhhCCHH
Confidence 899999986542 367777654310 01 1233444444444321 123445789999
Q ss_pred HHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHH
Q psy1503 218 QKARINLARAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGC 260 (265)
Q Consensus 218 qrqRialARal~~~~~illLDEp~s~LD~~~~~~i~~~~i~~~ 260 (265)
||||++|||||+.+|+++||||||++||+.+.+.+.+ .+..+
T Consensus 406 q~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~-~L~~l 447 (490)
T PRK10938 406 QQRLALIVRALVKHPTLLILDEPLQGLDPLNRQLVRR-FVDVL 447 (490)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHH-HHHHH
Confidence 9999999999999999999999999999999999865 44443
No 320
>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.9e-33 Score=246.31 Aligned_cols=135 Identities=27% Similarity=0.596 Sum_probs=123.6
Q ss_pred eceEEEcCCcEEEEEcCCCChHHHHHHHHhcCcCCCccEEEEcCe-----------------EEEEecCCCCcc-ccHHH
Q psy1503 109 AVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSLGGT-----------------VSYASQEPWIFA-ATIRQ 170 (265)
Q Consensus 109 ~isl~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g~-----------------i~~v~Q~~~l~~-~ti~e 170 (265)
+++|+.+.-.++||-|+||||||||+|+|+|+..|++|.|.++|. ||||+||..||+ .||+.
T Consensus 16 ~a~~~~p~~GvTAlFG~SGsGKTslin~IaGL~rPdeG~I~lngr~L~Ds~k~i~lp~~~RriGYVFQDARLFpH~tVrg 95 (352)
T COG4148 16 DANFTLPARGITALFGPSGSGKTSLINMIAGLTRPDEGRIELNGRVLVDAEKGIFLPPEKRRIGYVFQDARLFPHYTVRG 95 (352)
T ss_pred EEeccCCCCceEEEecCCCCChhhHHHHHhccCCccccEEEECCEEeecccCCcccChhhheeeeEeeccccccceEEec
Confidence 688999887899999999999999999999999999999999984 999999999996 69999
Q ss_pred HHhcCCccc-HHHHHHHHHHhcchhHHhcCCCCCccccCCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHH
Q psy1503 171 NILFGLPYL-RRRYADVIRVCALQDDFDSLPNGDFTVVGERGASLSGGQKARINLARAVYKNADIYLLDDPLSAVDMHVG 249 (265)
Q Consensus 171 ni~~~~~~~-~~~~~~~~~~~~l~~~i~~l~~g~~t~vg~~g~~LSgGqrqRialARal~~~~~illLDEp~s~LD~~~~ 249 (265)
|+.||.... ...+.+++...++.+.+++.| ..||||+||||||+|||+..|+++++|||+|+||....
T Consensus 96 NL~YG~~~~~~~~fd~iv~lLGI~hLL~R~P-----------~~LSGGEkQRVAIGRALLt~P~LLLmDEPLaSLD~~RK 164 (352)
T COG4148 96 NLRYGMWKSMRAQFDQLVALLGIEHLLDRYP-----------GTLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRK 164 (352)
T ss_pred chhhhhcccchHhHHHHHHHhCcHHHHhhCC-----------CccCcchhhHHHHHHHHhcCCCeeeecCchhhcccchh
Confidence 999997654 556778888888888888777 58999999999999999999999999999999999998
Q ss_pred HHHHH
Q psy1503 250 KHLFE 254 (265)
Q Consensus 250 ~~i~~ 254 (265)
.+|+-
T Consensus 165 ~Eilp 169 (352)
T COG4148 165 REILP 169 (352)
T ss_pred hHHHH
Confidence 88864
No 321
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=100.00 E-value=3.2e-32 Score=269.37 Aligned_cols=159 Identities=25% Similarity=0.345 Sum_probs=126.2
Q ss_pred CCcEEEEeEEEEeCCCCCCcceeeceEEEcCCcEEEEEcCCCChHHHHHHHHhcCcCCCccEEEEcC--eEEEEecCC-C
Q psy1503 86 KGHVSLDNVTAQWSLQNADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSLGG--TVSYASQEP-W 162 (265)
Q Consensus 86 ~~~i~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g--~i~~v~Q~~-~ 162 (265)
...|+++|++++|+. .++++|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++. .++|++|++ .
T Consensus 317 ~~~l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~i~y~~q~~~~ 393 (635)
T PRK11147 317 KIVFEMENVNYQIDG---KQLVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQADSGRIHCGTKLEVAYFDQHRAE 393 (635)
T ss_pred CceEEEeeeEEEECC---eEEEcCcEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCCcEEEEEeCcccc
Confidence 346999999999963 4689999999999999999999999999999999999999999999854 499999986 4
Q ss_pred Ccc-ccHHHHHhcCCc-c--c--HHHHHHHHHHhcchhHHhcCCCCCccccCCCCCCCCHHHHHHHHHHHHHccCCCEEE
Q psy1503 163 IFA-ATIRQNILFGLP-Y--L--RRRYADVIRVCALQDDFDSLPNGDFTVVGERGASLSGGQKARINLARAVYKNADIYL 236 (265)
Q Consensus 163 l~~-~ti~eni~~~~~-~--~--~~~~~~~~~~~~l~~~i~~l~~g~~t~vg~~g~~LSgGqrqRialARal~~~~~ill 236 (265)
+++ .|+.||+.++.. . . ..+..+.++..++..+ ....+...||||||||++||||++.+|+++|
T Consensus 394 l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~----------~~~~~~~~LSgGekqRl~la~al~~~p~lLl 463 (635)
T PRK11147 394 LDPEKTVMDNLAEGKQEVMVNGRPRHVLGYLQDFLFHPK----------RAMTPVKALSGGERNRLLLARLFLKPSNLLI 463 (635)
T ss_pred cCCCCCHHHHHHhhcccccccchHHHHHHHHHhcCCCHH----------HHhChhhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 665 599999987532 1 1 1222333333333211 1233456899999999999999999999999
Q ss_pred EeCCCCCcCHHHHHHHHHHHHH
Q psy1503 237 LDDPLSAVDMHVGKHLFEDCIS 258 (265)
Q Consensus 237 LDEp~s~LD~~~~~~i~~~~i~ 258 (265)
|||||++||..+...+.+ .+.
T Consensus 464 LDEPt~~LD~~~~~~l~~-~l~ 484 (635)
T PRK11147 464 LDEPTNDLDVETLELLEE-LLD 484 (635)
T ss_pred EcCCCCCCCHHHHHHHHH-HHH
Confidence 999999999999876644 443
No 322
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=100.00 E-value=2.6e-32 Score=291.91 Aligned_cols=158 Identities=26% Similarity=0.408 Sum_probs=132.1
Q ss_pred CcEEEEeEEEEeCCCCCCcceeeceEEEcCCcEEEEEcCCCChHHHHHHHHhcCcCCCccEEEEcCe------------E
Q psy1503 87 GHVSLDNVTAQWSLQNADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSLGGT------------V 154 (265)
Q Consensus 87 ~~i~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g~------------i 154 (265)
..|+++|+++.|++. ++.+++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|. +
T Consensus 927 ~~L~I~nLsK~y~~~-~k~aL~~lsl~I~~Gei~aLLG~NGAGKSTLLkiLaGLl~PtsG~I~i~G~dI~~~~~~~r~~I 1005 (2272)
T TIGR01257 927 PGVCVKNLVKIFEPS-GRPAVDRLNITFYENQITAFLGHNGAGKTTTLSILTGLLPPTSGTVLVGGKDIETNLDAVRQSL 1005 (2272)
T ss_pred ceEEEEeEEEEecCC-CceEEEeeEEEEcCCcEEEEECCCCChHHHHHHHHhcCCCCCceEEEECCEECcchHHHHhhcE
Confidence 469999999999532 356999999999999999999999999999999999999999999999983 8
Q ss_pred EEEecCCCCcc-ccHHHHHhcCCc---cc----HHHHHHHHHHhcchhHHhcCCCCCccccCCCCCCCCHHHHHHHHHHH
Q psy1503 155 SYASQEPWIFA-ATIRQNILFGLP---YL----RRRYADVIRVCALQDDFDSLPNGDFTVVGERGASLSGGQKARINLAR 226 (265)
Q Consensus 155 ~~v~Q~~~l~~-~ti~eni~~~~~---~~----~~~~~~~~~~~~l~~~i~~l~~g~~t~vg~~g~~LSgGqrqRialAR 226 (265)
|||||++.+++ .|++||+.++.. .. +++..+.++.+++.+. ......+||||||||++|||
T Consensus 1006 G~~pQ~~~L~~~LTV~E~L~f~~~lkg~~~~~~~~~v~~lL~~vgL~~~-----------~~~~~~~LSGGqKQRLsLAr 1074 (2272)
T TIGR01257 1006 GMCPQHNILFHHLTVAEHILFYAQLKGRSWEEAQLEMEAMLEDTGLHHK-----------RNEEAQDLSGGMQRKLSVAI 1074 (2272)
T ss_pred EEEecCCcCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchh-----------hcCChhhCCHHHHHHHHHHH
Confidence 99999999986 599999987421 11 1233444455444332 34456799999999999999
Q ss_pred HHccCCCEEEEeCCCCCcCHHHHHHHHHHH
Q psy1503 227 AVYKNADIYLLDDPLSAVDMHVGKHLFEDC 256 (265)
Q Consensus 227 al~~~~~illLDEp~s~LD~~~~~~i~~~~ 256 (265)
||+.+|+|+|||||||+||+.+++.+++..
T Consensus 1075 ALi~~PkVLLLDEPTSGLDp~sr~~l~~lL 1104 (2272)
T TIGR01257 1075 AFVGDAKVVVLDEPTSGVDPYSRRSIWDLL 1104 (2272)
T ss_pred HHHcCCCEEEEECCCcCCCHHHHHHHHHHH
Confidence 999999999999999999999999987633
No 323
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=100.00 E-value=2.9e-32 Score=259.49 Aligned_cols=165 Identities=22% Similarity=0.365 Sum_probs=130.4
Q ss_pred cEEEEeEEEEeCCCCC-CcceeeceEEEcCCcEEEEEcCCCChHHHHHHHHhcCcCCC----ccEEEEcCe---------
Q psy1503 88 HVSLDNVTAQWSLQNA-DLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRIS----SGKVSLGGT--------- 153 (265)
Q Consensus 88 ~i~~~~~~~~~~~~~~-~~~l~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~----~G~i~~~g~--------- 153 (265)
.++++|++..|..... ..+++||||+|.+||++||||.|||||||+.++|+|+.++. +|+|.++|.
T Consensus 5 lL~V~nL~v~~~~~~~~~~~v~~vsf~v~~GE~lgIvGESGsGKSt~a~~i~gll~~~~~~~~G~I~~~g~dl~~l~~~~ 84 (539)
T COG1123 5 LLEVENLTVEFATDGGRVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLGLSERE 84 (539)
T ss_pred eEEEeceEEEEecCCcceeeeecceEEecCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcccceEEEECCcchhcCCHHH
Confidence 6899999999975422 25899999999999999999999999999999999999988 899999883
Q ss_pred --------EEEEecCCC-Cc-c-ccHHHHHhc----CCcc----cHHHHHHHHHHhcchhHHhcCCCCCccccCCCCCCC
Q psy1503 154 --------VSYASQEPW-IF-A-ATIRQNILF----GLPY----LRRRYADVIRVCALQDDFDSLPNGDFTVVGERGASL 214 (265)
Q Consensus 154 --------i~~v~Q~~~-l~-~-~ti~eni~~----~~~~----~~~~~~~~~~~~~l~~~i~~l~~g~~t~vg~~g~~L 214 (265)
|+|+||+|+ .+ + .||.+.|.= .... ..++..+.++..++.+.... ...+.+|
T Consensus 85 ~r~~rg~~Ia~i~Q~p~~slnP~~tIg~Qi~E~~~~h~~~~~~ea~~~a~elL~~Vgl~~~~~~---------~~yPheL 155 (539)
T COG1123 85 MRKLRGKRIAMIFQDPMTSLNPVMTIGDQIREALRLHGKGSRAEARKRAVELLEQVGLPDPERR---------DRYPHQL 155 (539)
T ss_pred HHHhccccEEEEecCchhhcCchhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHcCCCChhhh---------ccCCccc
Confidence 999999986 34 4 477666642 1111 12333445555555443332 2345799
Q ss_pred CHHHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHHhh
Q psy1503 215 SGGQKARINLARAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGCLT 262 (265)
Q Consensus 215 SgGqrqRialARal~~~~~illLDEp~s~LD~~~~~~i~~~~i~~~l~ 262 (265)
|||||||+.||+||+.+|+++|+||||++||+.++.+|++ ++..+.+
T Consensus 156 SGG~rQRv~iAmALa~~P~LLIaDEPTTaLDvt~q~qIL~-llk~l~~ 202 (539)
T COG1123 156 SGGMRQRVMIAMALALKPKLLIADEPTTALDVTTQAQILD-LLKDLQR 202 (539)
T ss_pred CchHHHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHH-HHHHHHH
Confidence 9999999999999999999999999999999999999976 4555443
No 324
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.7e-32 Score=264.49 Aligned_cols=156 Identities=19% Similarity=0.357 Sum_probs=122.1
Q ss_pred cEEEEeEEEEeCCCCCCcceeeceEEEcCCcEEEEEcCCCChHHHHHHHHhcCcCCCccEEEEcCe--------------
Q psy1503 88 HVSLDNVTAQWSLQNADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSLGGT-------------- 153 (265)
Q Consensus 88 ~i~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g~-------------- 153 (265)
.++++|+++. .+++|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|+
T Consensus 257 ~l~~~~~~~~-------~~l~~isl~i~~Ge~~~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~ 329 (501)
T PRK11288 257 RLRLDGLKGP-------GLREPISFSVRAGEIVGLFGLVGAGRSELMKLLYGATRRTAGQVYLDGKPIDIRSPRDAIRAG 329 (501)
T ss_pred EEEEeccccC-------CcccceeEEEeCCcEEEEEcCCCCCHHHHHHHHcCCCcCCCceEEECCEECCCCCHHHHHhCC
Confidence 4778888731 3799999999999999999999999999999999999999999999862
Q ss_pred EEEEecCC---CCcc-ccHHHHHhcCCcc---------cH----HHHHHHHHHhcchhHHhcCCCCCccccCCCCCCCCH
Q psy1503 154 VSYASQEP---WIFA-ATIRQNILFGLPY---------LR----RRYADVIRVCALQDDFDSLPNGDFTVVGERGASLSG 216 (265)
Q Consensus 154 i~~v~Q~~---~l~~-~ti~eni~~~~~~---------~~----~~~~~~~~~~~l~~~i~~l~~g~~t~vg~~g~~LSg 216 (265)
++|++|++ .+|+ .|+.||+.++... .. ++..+.++.+++. .........+|||
T Consensus 330 i~~~~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~----------~~~~~~~~~~LSg 399 (501)
T PRK11288 330 IMLCPEDRKAEGIIPVHSVADNINISARRHHLRAGCLINNRWEAENADRFIRSLNIK----------TPSREQLIMNLSG 399 (501)
T ss_pred CEEcCcCHhhCCCcCCCCHHHHhccccchhhcccccccChHHHHHHHHHHHHhcCcc----------cCCccCccccCCH
Confidence 78999997 3665 6999999875311 11 1122222222221 0123455679999
Q ss_pred HHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHHh
Q psy1503 217 GQKARINLARAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGCL 261 (265)
Q Consensus 217 GqrqRialARal~~~~~illLDEp~s~LD~~~~~~i~~~~i~~~l 261 (265)
|||||++|||||+.+|+++||||||++||..+.+.+++ ++..+.
T Consensus 400 Gq~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~-~l~~l~ 443 (501)
T PRK11288 400 GNQQKAILGRWLSEDMKVILLDEPTRGIDVGAKHEIYN-VIYELA 443 (501)
T ss_pred HHHHHHHHHHHHccCCCEEEEcCCCCCCCHhHHHHHHH-HHHHHH
Confidence 99999999999999999999999999999999999865 554443
No 325
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.4e-32 Score=268.36 Aligned_cols=162 Identities=22% Similarity=0.345 Sum_probs=119.8
Q ss_pred cEEEEeEEEEeCCCCCCcceeeceEEEcCCcEEEEEcCCCChHHHHHHHHhcCcCCCccEEEEcC--eEEEEecCCCCcc
Q psy1503 88 HVSLDNVTAQWSLQNADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSLGG--TVSYASQEPWIFA 165 (265)
Q Consensus 88 ~i~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g--~i~~v~Q~~~l~~ 165 (265)
+|+++|++++|+. +++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++| .++|++|++..+.
T Consensus 1 ~i~i~nls~~~g~---~~~l~~vs~~i~~Ge~v~LvG~NGsGKSTLLkiL~G~~~pd~G~I~~~~~~~i~~~~q~~~~~~ 77 (638)
T PRK10636 1 MIVFSSLQIRRGV---RVLLDNATATINPGQKVGLVGKNGCGKSTLLALLKNEISADGGSYTFPGNWQLAWVNQETPALP 77 (638)
T ss_pred CEEEEEEEEEeCC---ceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCCEEEEEecCCCCCC
Confidence 3789999999963 4689999999999999999999999999999999999999999999987 4899999765454
Q ss_pred ccHHHHHhcCCcc-c--H------------HHHHHHH---HH-------hcchhHHhcCCCCCc-cccCCCCCCCCHHHH
Q psy1503 166 ATIRQNILFGLPY-L--R------------RRYADVI---RV-------CALQDDFDSLPNGDF-TVVGERGASLSGGQK 219 (265)
Q Consensus 166 ~ti~eni~~~~~~-~--~------------~~~~~~~---~~-------~~l~~~i~~l~~g~~-t~vg~~g~~LSgGqr 219 (265)
.|+.+++.-+... . . ..+.... .. ..+...+..+ |.. ........+||||||
T Consensus 78 ~~~~~~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l--gl~~~~~~~~~~~LSgGer 155 (638)
T PRK10636 78 QPALEYVIDGDREYRQLEAQLHDANERNDGHAIATIHGKLDAIDAWTIRSRAASLLHGL--GFSNEQLERPVSDFSGGWR 155 (638)
T ss_pred CCHHHHHHHhhHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhC--CCCchhhcCchhhcCHHHH
Confidence 5665554321100 0 0 0000000 00 0011122222 221 123456678999999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHH
Q psy1503 220 ARINLARAVYKNADIYLLDDPLSAVDMHVGKHLFE 254 (265)
Q Consensus 220 qRialARal~~~~~illLDEp~s~LD~~~~~~i~~ 254 (265)
||++|||||+.+|+|+||||||++||+.+...+.+
T Consensus 156 qRv~LA~aL~~~P~lLLLDEPtn~LD~~~~~~L~~ 190 (638)
T PRK10636 156 MRLNLAQALICRSDLLLLDEPTNHLDLDAVIWLEK 190 (638)
T ss_pred HHHHHHHHHccCCCEEEEcCCCCcCCHHHHHHHHH
Confidence 99999999999999999999999999999887644
No 326
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=100.00 E-value=1.4e-32 Score=264.96 Aligned_cols=154 Identities=24% Similarity=0.473 Sum_probs=121.7
Q ss_pred cEEEEeEEEEeCCCCCCcceeeceEEEcCCcEEEEEcCCCChHHHHHHHHhcCcCCCccEEEEcC--------------e
Q psy1503 88 HVSLDNVTAQWSLQNADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSLGG--------------T 153 (265)
Q Consensus 88 ~i~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g--------------~ 153 (265)
.++++|+++ ++++++||+|++|++++|+||||||||||+++|+|+++|++|+|.++| .
T Consensus 257 ~l~~~~l~~--------~~l~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~G~~~p~~G~I~~~g~~i~~~~~~~~~~~~ 328 (501)
T PRK10762 257 RLKVDNLSG--------PGVNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGALPRTSGYVTLDGHEVVTRSPQDGLANG 328 (501)
T ss_pred EEEEeCccc--------CCcccceEEEcCCcEEEEecCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHHHHCC
Confidence 578888873 269999999999999999999999999999999999999999999987 2
Q ss_pred EEEEecCC---CCcc-ccHHHHHhcCCc---------ccH----HHHHHHHHHhcchhHHhcCCCCCccccCCCCCCCCH
Q psy1503 154 VSYASQEP---WIFA-ATIRQNILFGLP---------YLR----RRYADVIRVCALQDDFDSLPNGDFTVVGERGASLSG 216 (265)
Q Consensus 154 i~~v~Q~~---~l~~-~ti~eni~~~~~---------~~~----~~~~~~~~~~~l~~~i~~l~~g~~t~vg~~g~~LSg 216 (265)
++|++|++ .+++ .|+.||+.++.. ... ++..++++.+++. ..........|||
T Consensus 329 i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~----------~~~~~~~~~~LSg 398 (501)
T PRK10762 329 IVYISEDRKRDGLVLGMSVKENMSLTALRYFSRAGGSLKHADEQQAVSDFIRLFNIK----------TPSMEQAIGLLSG 398 (501)
T ss_pred CEEecCccccCCCcCCCcHHHHhhhhhhhhhcccccccCHHHHHHHHHHHHHhcCCC----------CCCccCchhhCCH
Confidence 89999997 4554 699999986421 011 1122222222221 0123456779999
Q ss_pred HHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHH
Q psy1503 217 GQKARINLARAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGC 260 (265)
Q Consensus 217 GqrqRialARal~~~~~illLDEp~s~LD~~~~~~i~~~~i~~~ 260 (265)
|||||++|||||+.+|+++||||||++||+.+.+.+.+ .+..+
T Consensus 399 Gekqrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~-~l~~~ 441 (501)
T PRK10762 399 GNQQKVAIARGLMTRPKVLILDEPTRGVDVGAKKEIYQ-LINQF 441 (501)
T ss_pred HHHHHHHHHHHHhhCCCEEEEcCCCCCCCHhHHHHHHH-HHHHH
Confidence 99999999999999999999999999999999998865 45444
No 327
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=100.00 E-value=5.1e-32 Score=289.69 Aligned_cols=162 Identities=21% Similarity=0.316 Sum_probs=133.8
Q ss_pred CCcEEEEeEEEEeCCCCCCcceeeceEEEcCCcEEEEEcCCCChHHHHHHHHhcCcCCCccEEEEcCe------------
Q psy1503 86 KGHVSLDNVTAQWSLQNADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSLGGT------------ 153 (265)
Q Consensus 86 ~~~i~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g~------------ 153 (265)
...|+++|++++|+.. .+.+++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.
T Consensus 1935 ~~~L~v~nLsK~Y~~~-~~~aL~~ISf~I~~GEi~gLLG~NGAGKTTLlkmL~Gll~ptsG~I~i~G~~i~~~~~~~r~~ 2013 (2272)
T TIGR01257 1935 TDILRLNELTKVYSGT-SSPAVDRLCVGVRPGECFGLLGVNGAGKTTTFKMLTGDTTVTSGDATVAGKSILTNISDVHQN 2013 (2272)
T ss_pred CceEEEEEEEEEECCC-CceEEEeeEEEEcCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECcchHHHHhhh
Confidence 3479999999999632 256999999999999999999999999999999999999999999999882
Q ss_pred EEEEecCCCCcc-ccHHHHHhcCCc---cc----HHHHHHHHHHhcchhHHhcCCCCCccccCCCCCCCCHHHHHHHHHH
Q psy1503 154 VSYASQEPWIFA-ATIRQNILFGLP---YL----RRRYADVIRVCALQDDFDSLPNGDFTVVGERGASLSGGQKARINLA 225 (265)
Q Consensus 154 i~~v~Q~~~l~~-~ti~eni~~~~~---~~----~~~~~~~~~~~~l~~~i~~l~~g~~t~vg~~g~~LSgGqrqRialA 225 (265)
||||||++.+++ .|++||+.+... .. ++...++++.+++.+..+ .....||||||||++||
T Consensus 2014 IGy~pQ~~~L~~~LTv~E~L~l~a~l~g~~~~~~~~~v~~lLe~lgL~~~~d-----------k~~~~LSGGqKqRLslA 2082 (2272)
T TIGR01257 2014 MGYCPQFDAIDDLLTGREHLYLYARLRGVPAEEIEKVANWSIQSLGLSLYAD-----------RLAGTYSGGNKRKLSTA 2082 (2272)
T ss_pred EEEEeccccCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHhc-----------CChhhCCHHHHHHHHHH
Confidence 899999998886 599999976311 11 122334555566544332 34568999999999999
Q ss_pred HHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHH
Q psy1503 226 RAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGC 260 (265)
Q Consensus 226 Ral~~~~~illLDEp~s~LD~~~~~~i~~~~i~~~ 260 (265)
|||+.+|+|+||||||+|||+.+++.+++ .+..+
T Consensus 2083 ~ALi~~P~VLLLDEPTsGLDp~sr~~l~~-lL~~l 2116 (2272)
T TIGR01257 2083 IALIGCPPLVLLDEPTTGMDPQARRMLWN-TIVSI 2116 (2272)
T ss_pred HHHhcCCCEEEEECCCCCCCHHHHHHHHH-HHHHH
Confidence 99999999999999999999999999876 44444
No 328
>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional
Probab=100.00 E-value=6.5e-32 Score=267.65 Aligned_cols=162 Identities=23% Similarity=0.383 Sum_probs=131.3
Q ss_pred cEEEEeEEEEeCCC-CCCcceeeceEEEcCCcEEEEEcCCCChHHHHHHHHhcCcCCCccEEEEcCe-------------
Q psy1503 88 HVSLDNVTAQWSLQ-NADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSLGGT------------- 153 (265)
Q Consensus 88 ~i~~~~~~~~~~~~-~~~~~l~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g~------------- 153 (265)
+++++|++++|+.. ...++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.
T Consensus 4 ~l~~~nl~~~y~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~ 83 (648)
T PRK10535 4 LLELKDIRRSYPSGEEQVEVLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKPTSGTYRVAGQDVATLDADALAQL 83 (648)
T ss_pred EEEEeeEEEEeCCCCCCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEcCcCCHHHHHHH
Confidence 68999999999632 1246899999999999999999999999999999999999999999999872
Q ss_pred ----EEEEecCCCCcc-ccHHHHHhcCCc---cc----HHHHHHHHHHhcchhHHhcCCCCCccccCCCCCCCCHHHHHH
Q psy1503 154 ----VSYASQEPWIFA-ATIRQNILFGLP---YL----RRRYADVIRVCALQDDFDSLPNGDFTVVGERGASLSGGQKAR 221 (265)
Q Consensus 154 ----i~~v~Q~~~l~~-~ti~eni~~~~~---~~----~~~~~~~~~~~~l~~~i~~l~~g~~t~vg~~g~~LSgGqrqR 221 (265)
++|++|++.+|+ .|+.||+.++.. .. .++..+.++.+++.+ .+.....+|||||+||
T Consensus 84 ~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~lgl~~-----------~~~~~~~~LS~Gq~qr 152 (648)
T PRK10535 84 RREHFGFIFQRYHLLSHLTAAQNVEVPAVYAGLERKQRLLRAQELLQRLGLED-----------RVEYQPSQLSGGQQQR 152 (648)
T ss_pred HhccEEEEeCCcccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChh-----------hhcCCcccCCHHHHHH
Confidence 799999999996 599999986421 11 112233344444433 3344557899999999
Q ss_pred HHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHHh
Q psy1503 222 INLARAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGCL 261 (265)
Q Consensus 222 ialARal~~~~~illLDEp~s~LD~~~~~~i~~~~i~~~l 261 (265)
++|||||+++|+++||||||++||+.+.+.+.+ .+..+.
T Consensus 153 v~LAraL~~~P~lLllDEP~~gLD~~s~~~l~~-ll~~l~ 191 (648)
T PRK10535 153 VSIARALMNGGQVILADEPTGALDSHSGEEVMA-ILHQLR 191 (648)
T ss_pred HHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHH-HHHHHH
Confidence 999999999999999999999999999988855 444443
No 329
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=100.00 E-value=3.6e-32 Score=235.07 Aligned_cols=140 Identities=16% Similarity=0.180 Sum_probs=110.4
Q ss_pred ceeeceEEEcCCcEEEEEcCCCChHHHHHHHHhcCcCCCccEEE-EcCeEEEEecCCCCccc-cHHHHHhcCCc---ccH
Q psy1503 106 TLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVS-LGGTVSYASQEPWIFAA-TIRQNILFGLP---YLR 180 (265)
Q Consensus 106 ~l~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~-~~g~i~~v~Q~~~l~~~-ti~eni~~~~~---~~~ 180 (265)
+|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|. ++|....+.|++.+++. |++||+.+... ...
T Consensus 2 vl~~vs~~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~sG~i~~~~~~~~~~~~~~~l~~~ltv~enl~~~~~~~~~~~ 81 (213)
T PRK15177 2 VLDKTDFVMGYHEHIGILAAPGSGKTTLTRLLCGLDAPDEGDFIGLRGDALPLGANSFILPGLTGEENARMMASLYGLDG 81 (213)
T ss_pred eeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCCCCCEEEecCceeccccccccCCcCcHHHHHHHHHHHcCCCH
Confidence 68999999999999999999999999999999999999999997 78765456677778875 99999986422 122
Q ss_pred HHHHHHH-HHhcchhHHhcCCCCCccccCCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHH
Q psy1503 181 RRYADVI-RVCALQDDFDSLPNGDFTVVGERGASLSGGQKARINLARAVYKNADIYLLDDPLSAVDMHVGKHLFEDC 256 (265)
Q Consensus 181 ~~~~~~~-~~~~l~~~i~~l~~g~~t~vg~~g~~LSgGqrqRialARal~~~~~illLDEp~s~LD~~~~~~i~~~~ 256 (265)
++..+.+ +..++ +.. .......||||||||++||||++.+|+++|||||++++|+.+...+.+..
T Consensus 82 ~~~~~~~~~~~~l-------~~~----~~~~~~~lS~G~~qrv~la~al~~~p~llllDEP~~~lD~~~~~~~~~~l 147 (213)
T PRK15177 82 DEFSHFCYQLTQL-------EQC----YTDRVSEYSVTMKTHLAFAINLLLPCRLYIADGKLYTGDNATQLRMQAAL 147 (213)
T ss_pred HHHHHHHHHHhCh-------hHH----hhchHhhcCHHHHHHHHHHHHHhcCCCEEEECCCCccCCHHHHHHHHHHH
Confidence 2222211 22222 221 22345679999999999999999999999999999999999988876643
No 330
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=99.98 E-value=7.4e-32 Score=266.75 Aligned_cols=156 Identities=26% Similarity=0.456 Sum_probs=124.9
Q ss_pred CCcEEEEeEEEEeCCCCCCcceeeceEEEcCCcEEEEEcCCCChHHHHHHHHhcCcCCCccEEEEcC--eEEEEecCC--
Q psy1503 86 KGHVSLDNVTAQWSLQNADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSLGG--TVSYASQEP-- 161 (265)
Q Consensus 86 ~~~i~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g--~i~~v~Q~~-- 161 (265)
...|+++|++++|+. ..+|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.+++ .+||++|++
T Consensus 310 ~~~l~~~~l~~~y~~---~~il~~isl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~igy~~Q~~~~ 386 (638)
T PRK10636 310 NPLLKMEKVSAGYGD---RIILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELAPVSGEIGLAKGIKLGYFAQHQLE 386 (638)
T ss_pred CceEEEEeeEEEeCC---eeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCCEEEEEecCcchh
Confidence 347999999999953 4689999999999999999999999999999999999999999999964 599999985
Q ss_pred CCcc-ccHHHHHhc-CCcccHHHHHHHHHHhcchhHHhcCCCCCccccCCCCCCCCHHHHHHHHHHHHHccCCCEEEEeC
Q psy1503 162 WIFA-ATIRQNILF-GLPYLRRRYADVIRVCALQDDFDSLPNGDFTVVGERGASLSGGQKARINLARAVYKNADIYLLDD 239 (265)
Q Consensus 162 ~l~~-~ti~eni~~-~~~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~vg~~g~~LSgGqrqRialARal~~~~~illLDE 239 (265)
.+.. .|+.+++.. .......+..++++.+++... .+......||||||||++||||++.+|+++||||
T Consensus 387 ~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~l~~~----------~~~~~~~~LSgGekqRl~La~~l~~~p~lLlLDE 456 (638)
T PRK10636 387 FLRADESPLQHLARLAPQELEQKLRDYLGGFGFQGD----------KVTEETRRFSGGEKARLVLALIVWQRPNLLLLDE 456 (638)
T ss_pred hCCccchHHHHHHHhCchhhHHHHHHHHHHcCCChh----------HhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 3443 488888642 111122334445555444221 1223456899999999999999999999999999
Q ss_pred CCCCcCHHHHHHHHH
Q psy1503 240 PLSAVDMHVGKHLFE 254 (265)
Q Consensus 240 p~s~LD~~~~~~i~~ 254 (265)
||++||+.+...+.+
T Consensus 457 Pt~~LD~~~~~~l~~ 471 (638)
T PRK10636 457 PTNHLDLDMRQALTE 471 (638)
T ss_pred CCCCCCHHHHHHHHH
Confidence 999999999988755
No 331
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=99.98 E-value=5.6e-32 Score=285.97 Aligned_cols=165 Identities=24% Similarity=0.405 Sum_probs=134.6
Q ss_pred cEEEEeEEEEeCCC-CCCcceeeceEEEcCCcEEEEEcCCCChHHHHHHHHhcCcC---CCccEEEEcCe---------E
Q psy1503 88 HVSLDNVTAQWSLQ-NADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELR---ISSGKVSLGGT---------V 154 (265)
Q Consensus 88 ~i~~~~~~~~~~~~-~~~~~l~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~---~~~G~i~~~g~---------i 154 (265)
.++++|++++|+.+ ..+.+|+|||+++++|++++|+||||||||||+++|+|..+ |++|+|.++|. +
T Consensus 759 ~l~~~nl~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~G~sGaGKSTLL~~Lag~~~~g~~~~G~I~i~G~~~~~~~~~~i 838 (1394)
T TIGR00956 759 IFHWRNLTYEVKIKKEKRVILNNVDGWVKPGTLTALMGASGAGKTTLLNVLAERVTTGVITGGDRLVNGRPLDSSFQRSI 838 (1394)
T ss_pred eEEEEeeEEEecCCCCCcEeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECChhhhcce
Confidence 47899999999532 23569999999999999999999999999999999999997 78899999983 8
Q ss_pred EEEecCCCCc-cccHHHHHhcCCc------ccH----HHHHHHHHHhcchhHHhcCCCCCccccCCCCCCCCHHHHHHHH
Q psy1503 155 SYASQEPWIF-AATIRQNILFGLP------YLR----RRYADVIRVCALQDDFDSLPNGDFTVVGERGASLSGGQKARIN 223 (265)
Q Consensus 155 ~~v~Q~~~l~-~~ti~eni~~~~~------~~~----~~~~~~~~~~~l~~~i~~l~~g~~t~vg~~g~~LSgGqrqRia 223 (265)
+||+|++.++ ..||+||+.++.. ..+ ++++++++..++. +-.++.+|+.+.+||||||||++
T Consensus 839 ~yv~Q~~~~~~~~Tv~E~L~~~a~l~~~~~~~~~~~~~~v~~~l~~l~L~-------~~~d~~v~~~~~~LSgGqrqRl~ 911 (1394)
T TIGR00956 839 GYVQQQDLHLPTSTVRESLRFSAYLRQPKSVSKSEKMEYVEEVIKLLEME-------SYADAVVGVPGEGLNVEQRKRLT 911 (1394)
T ss_pred eeecccccCCCCCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCCh-------hhCCCeeCCCCCCCCHHHhhHHH
Confidence 9999997665 5699999997421 111 2234445554443 23467788888899999999999
Q ss_pred HHHHHccCCC-EEEEeCCCCCcCHHHHHHHHHHHHHHH
Q psy1503 224 LARAVYKNAD-IYLLDDPLSAVDMHVGKHLFEDCISGC 260 (265)
Q Consensus 224 lARal~~~~~-illLDEp~s~LD~~~~~~i~~~~i~~~ 260 (265)
|||||+.+|+ |++||||||+||+.++..|.+ .+..+
T Consensus 912 Ia~aL~~~P~~iLlLDEPTsgLD~~~~~~i~~-~L~~l 948 (1394)
T TIGR00956 912 IGVELVAKPKLLLFLDEPTSGLDSQTAWSICK-LMRKL 948 (1394)
T ss_pred HHHHHHcCCCeEEEEcCCCCCCCHHHHHHHHH-HHHHH
Confidence 9999999997 999999999999999988855 44444
No 332
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.98 E-value=4.1e-32 Score=228.42 Aligned_cols=113 Identities=25% Similarity=0.356 Sum_probs=101.0
Q ss_pred EeEEEEeCCCCCCcceeeceEEEcCCcEEEEEcCCCChHHHHHHHHhcCcCCCccEEEEcCe-EEEEecCCCCccccHHH
Q psy1503 92 DNVTAQWSLQNADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSLGGT-VSYASQEPWIFAATIRQ 170 (265)
Q Consensus 92 ~~~~~~~~~~~~~~~l~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g~-i~~v~Q~~~l~~~ti~e 170 (265)
.|++++|+. ..++++ +|++++|++++|+||||||||||+++|+|+++|++|+|.++|. ++|++|++.
T Consensus 4 ~~l~~~~~~---~~~l~~-~~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~q~~~-------- 71 (177)
T cd03222 4 PDCVKRYGV---FFLLVE-LGVVKEGEVIGIVGPNGTGKTTAVKILAGQLIPNGDNDEWDGITPVYKPQYID-------- 71 (177)
T ss_pred CCeEEEECC---EEEEcc-CcEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCcEEEECCEEEEEEcccCC--------
Confidence 578899953 457888 4999999999999999999999999999999999999999985 899988642
Q ss_pred HHhcCCcccHHHHHHHHHHhcchhHHhcCCCCCccccCCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHH
Q psy1503 171 NILFGLPYLRRRYADVIRVCALQDDFDSLPNGDFTVVGERGASLSGGQKARINLARAVYKNADIYLLDDPLSAVDMHVGK 250 (265)
Q Consensus 171 ni~~~~~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~vg~~g~~LSgGqrqRialARal~~~~~illLDEp~s~LD~~~~~ 250 (265)
||||||||++||||++.+|+++||||||++||+.+..
T Consensus 72 -------------------------------------------LSgGq~qrv~laral~~~p~lllLDEPts~LD~~~~~ 108 (177)
T cd03222 72 -------------------------------------------LSGGELQRVAIAAALLRNATFYLFDEPSAYLDIEQRL 108 (177)
T ss_pred -------------------------------------------CCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHH
Confidence 9999999999999999999999999999999999998
Q ss_pred HHHHHHHHHH
Q psy1503 251 HLFEDCISGC 260 (265)
Q Consensus 251 ~i~~~~i~~~ 260 (265)
.+.+ .+..+
T Consensus 109 ~l~~-~l~~~ 117 (177)
T cd03222 109 NAAR-AIRRL 117 (177)
T ss_pred HHHH-HHHHH
Confidence 8765 44444
No 333
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.98 E-value=3e-32 Score=239.18 Aligned_cols=139 Identities=26% Similarity=0.440 Sum_probs=116.1
Q ss_pred cEEEEeEEEEeCCCCC------CcceeeceEEEcCCcEEEEEcCCCChHHHHHHHHhcCcCCCccEEEEcCeE-EEEecC
Q psy1503 88 HVSLDNVTAQWSLQNA------DLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSLGGTV-SYASQE 160 (265)
Q Consensus 88 ~i~~~~~~~~~~~~~~------~~~l~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g~i-~~v~Q~ 160 (265)
.++++|+++.|+.... ..+++||||+|++||+++|||+|||||||+-++|+|+++|++|+|.++|.= .-+.
T Consensus 4 ll~v~~l~k~f~~~~~~~~~~~v~avd~Vsf~i~~ge~~glVGESG~GKSTlgr~i~~L~~pt~G~i~f~g~~i~~~~-- 81 (268)
T COG4608 4 LLEVKNLKKYFPVGKGFGKKRYVKAVDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLEEPTSGEILFEGKDITKLS-- 81 (268)
T ss_pred eEEEeccEEEEecccccCcccceEEecceeEEEcCCCEEEEEecCCCCHHHHHHHHHcCcCCCCceEEEcCcchhhcc--
Confidence 6899999999964321 368999999999999999999999999999999999999999999998842 1111
Q ss_pred CCCccccHHHHHhcCCcccHHHHHHHHHHhcchhH-HhcCCCCCccccCCCCCCCCHHHHHHHHHHHHHccCCCEEEEeC
Q psy1503 161 PWIFAATIRQNILFGLPYLRRRYADVIRVCALQDD-FDSLPNGDFTVVGERGASLSGGQKARINLARAVYKNADIYLLDD 239 (265)
Q Consensus 161 ~~l~~~ti~eni~~~~~~~~~~~~~~~~~~~l~~~-i~~l~~g~~t~vg~~g~~LSgGqrqRialARal~~~~~illLDE 239 (265)
.....+++.+.++.+++..+ +.+.| .+|||||||||+|||||.-+|+++++||
T Consensus 82 ---------------~~~~~~~v~elL~~Vgl~~~~~~ryP-----------helSGGQrQRi~IARALal~P~liV~DE 135 (268)
T COG4608 82 ---------------KEERRERVLELLEKVGLPEEFLYRYP-----------HELSGGQRQRIGIARALALNPKLIVADE 135 (268)
T ss_pred ---------------hhHHHHHHHHHHHHhCCCHHHhhcCC-----------cccCchhhhhHHHHHHHhhCCcEEEecC
Confidence 11124567788888887653 44555 5899999999999999999999999999
Q ss_pred CCCCcCHHHHHHHHH
Q psy1503 240 PLSAVDMHVGKHLFE 254 (265)
Q Consensus 240 p~s~LD~~~~~~i~~ 254 (265)
|+|+||..++.+|.+
T Consensus 136 pvSaLDvSiqaqIln 150 (268)
T COG4608 136 PVSALDVSVQAQILN 150 (268)
T ss_pred chhhcchhHHHHHHH
Confidence 999999999999866
No 334
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.98 E-value=3.8e-32 Score=241.06 Aligned_cols=154 Identities=22% Similarity=0.352 Sum_probs=119.5
Q ss_pred EeEEEEeCCCCCCcceeeceEEEcCCcEEEEEcCCCChHHHHHHHHhcCcCCCccEEE-----------EcCe-------
Q psy1503 92 DNVTAQWSLQNADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVS-----------LGGT------- 153 (265)
Q Consensus 92 ~~~~~~~~~~~~~~~l~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~-----------~~g~------- 153 (265)
.+++|+|+. ...+++|+|+ +++|++++|+||||||||||+++|+|+++|++|+|. ++|.
T Consensus 4 ~~~~~~y~~--~~~~l~~i~~-i~~Ge~~~IvG~nGsGKSTLlk~l~Gl~~p~~G~I~~~~~~~~~~~~~~g~~~~~~~~ 80 (255)
T cd03236 4 DEPVHRYGP--NSFKLHRLPV-PREGQVLGLVGPNGIGKSTALKILAGKLKPNLGKFDDPPDWDEILDEFRGSELQNYFT 80 (255)
T ss_pred cCcceeecC--cchhhhcCCC-CCCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEeeccccchhhhhccCchhhhhhH
Confidence 368899963 2358999995 999999999999999999999999999999999995 5552
Q ss_pred --------EEEEecCCCCccccHHHHHhcCCc--ccHHHHHHHHHHhcchhHHhcCCCCCccccCCCCCCCCHHHHHHHH
Q psy1503 154 --------VSYASQEPWIFAATIRQNILFGLP--YLRRRYADVIRVCALQDDFDSLPNGDFTVVGERGASLSGGQKARIN 223 (265)
Q Consensus 154 --------i~~v~Q~~~l~~~ti~eni~~~~~--~~~~~~~~~~~~~~l~~~i~~l~~g~~t~vg~~g~~LSgGqrqRia 223 (265)
++|++|.+.+++.++.+|+.+... ...+...++++.+++.+ .......+||||||||++
T Consensus 81 ~~~~~~~~i~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~gl~~-----------~~~~~~~~LS~G~~qrv~ 149 (255)
T cd03236 81 KLLEGDVKVIVKPQYVDLIPKAVKGKVGELLKKKDERGKLDELVDQLELRH-----------VLDRNIDQLSGGELQRVA 149 (255)
T ss_pred HhhhcccceeeecchhccCchHHHHHHHHHhchhHHHHHHHHHHHHcCCch-----------hhcCChhhCCHHHHHHHH
Confidence 578889887777666666654311 11233444555554432 234566799999999999
Q ss_pred HHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHH
Q psy1503 224 LARAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGC 260 (265)
Q Consensus 224 lARal~~~~~illLDEp~s~LD~~~~~~i~~~~i~~~ 260 (265)
||||++.+|+++||||||++||+.+...+++ .+..+
T Consensus 150 laral~~~p~illlDEPts~LD~~~~~~l~~-~l~~l 185 (255)
T cd03236 150 IAAALARDADFYFFDEPSSYLDIKQRLNAAR-LIREL 185 (255)
T ss_pred HHHHHHhCCCEEEEECCCCCCCHHHHHHHHH-HHHHH
Confidence 9999999999999999999999999888754 44443
No 335
>COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.98 E-value=2.1e-32 Score=223.26 Aligned_cols=157 Identities=24% Similarity=0.398 Sum_probs=130.0
Q ss_pred cEEEEeEEEEeCCCCCCcceeeceEEEcCCcEEEEEcCCCChHHHHHHHHhcCcCCCccEEEEcCe--------------
Q psy1503 88 HVSLDNVTAQWSLQNADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSLGGT-------------- 153 (265)
Q Consensus 88 ~i~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g~-------------- 153 (265)
.|++++++|.|+. ..+|.||+|+.+.|+.+.+.||||+|||||++.|.=+..|.+|+..+.|.
T Consensus 2 sirv~~in~~yg~---~q~lfdi~l~~~~getlvllgpsgagkssllr~lnlle~p~sg~l~ia~~~fd~s~~~~~k~i~ 78 (242)
T COG4161 2 SIQLNGINCFYGA---HQALFDITLDCPEGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIR 78 (242)
T ss_pred ceEEccccccccc---chheeeeeecCCCCCEEEEECCCCCchHHHHHHHHHHhCCCCCeEEecccccccccCccHHHHH
Confidence 4789999999974 35899999999999999999999999999999999999999999998763
Q ss_pred -----EEEEecCCCCcc-ccHHHHHhcC------Cccc--HHHHHHHHHHhcchhHHhcCCCCCccccCCCCCCCCHHHH
Q psy1503 154 -----VSYASQEPWIFA-ATIRQNILFG------LPYL--RRRYADVIRVCALQDDFDSLPNGDFTVVGERGASLSGGQK 219 (265)
Q Consensus 154 -----i~~v~Q~~~l~~-~ti~eni~~~------~~~~--~~~~~~~~~~~~l~~~i~~l~~g~~t~vg~~g~~LSgGqr 219 (265)
+|+|+|...|++ .||.||+.-. ...+ ..+..+.++...+.+.-+++| -.|||||+
T Consensus 79 ~lr~~vgmvfqqy~lwphltv~enlieap~kv~gl~~~qa~~~a~ellkrlrl~~~adr~p-----------lhlsggqq 147 (242)
T COG4161 79 DLRRNVGMVFQQYNLWPHLTVQENLIEAPCRVLGLSKDQALARAEKLLKRLRLKPYADRYP-----------LHLSGGQQ 147 (242)
T ss_pred HHHHhhhhhhhhhccCchhHHHHHHHhhhHHHhCCCHHHHHHHHHHHHHHhccccccccCc-----------eecccchh
Confidence 999999999997 5999998632 2211 122334455555655555555 58999999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHH
Q psy1503 220 ARINLARAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISG 259 (265)
Q Consensus 220 qRialARal~~~~~illLDEp~s~LD~~~~~~i~~~~i~~ 259 (265)
||+||||||+.+|+++++||||++||++...++.+ .|..
T Consensus 148 qrvaiaralmmkpqvllfdeptaaldpeitaqvv~-iike 186 (242)
T COG4161 148 QRVAIARALMMEPQVLLFDEPTAALDPEITAQIVS-IIKE 186 (242)
T ss_pred hhHHHHHHHhcCCcEEeecCcccccCHHHHHHHHH-HHHH
Confidence 99999999999999999999999999999888855 4443
No 336
>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=99.98 E-value=5.1e-32 Score=242.38 Aligned_cols=162 Identities=22% Similarity=0.391 Sum_probs=126.3
Q ss_pred EEEEeEEEEeCCCC-CCcceeeceEEEcCCcEEEEEcCCCChHHHHHHHHhcCcC-C----CccEEEEcCe---------
Q psy1503 89 VSLDNVTAQWSLQN-ADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELR-I----SSGKVSLGGT--------- 153 (265)
Q Consensus 89 i~~~~~~~~~~~~~-~~~~l~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~-~----~~G~i~~~g~--------- 153 (265)
++++|++.+|.... ...+++||||++++||++||||.|||||||+.++|+|+++ | .+|+|.++|.
T Consensus 2 L~v~nL~v~f~~~~g~v~av~~vs~~i~~GE~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i~f~g~~l~~l~~~~ 81 (316)
T COG0444 2 LEVKNLSVSFPTDAGVVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSLSEKE 81 (316)
T ss_pred ceEeeeEEEEecCCccEEEEeceeEEEcCCcEEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEEEECCcccccCCHHH
Confidence 67899999996532 2468999999999999999999999999999999999998 3 5789999883
Q ss_pred --------EEEEecCCC--Ccc-ccHHHHHh----cCCcc-----cHHHHHHHHHHhcchh---HHhcCCCCCccccCCC
Q psy1503 154 --------VSYASQEPW--IFA-ATIRQNIL----FGLPY-----LRRRYADVIRVCALQD---DFDSLPNGDFTVVGER 210 (265)
Q Consensus 154 --------i~~v~Q~~~--l~~-~ti~eni~----~~~~~-----~~~~~~~~~~~~~l~~---~i~~l~~g~~t~vg~~ 210 (265)
|++++|+|. |-+ .||.+-+. ..... ..++..+.++..++.+ .++..
T Consensus 82 ~~~iRG~~I~mIfQ~p~~sLnPv~~Ig~Qi~E~l~~h~~~~~~~ea~~~a~~~L~~Vgi~~~~~~~~~Y----------- 150 (316)
T COG0444 82 LRKIRGKEIAMIFQDPMTSLNPVMTIGDQIAEVLRLHGKGLSKKEAKERAIELLELVGIPDPERRLKSY----------- 150 (316)
T ss_pred HHhhcCceEEEEEcCchhhcCChhhHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHcCCCCHHHHHhhC-----------
Confidence 999999985 333 36665543 21111 1223445566666643 23444
Q ss_pred CCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHHhh
Q psy1503 211 GASLSGGQKARINLARAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGCLT 262 (265)
Q Consensus 211 g~~LSgGqrqRialARal~~~~~illLDEp~s~LD~~~~~~i~~~~i~~~l~ 262 (265)
+.+|||||||||.||.||+.+|+++|.||||+|||..++.+|++ .+..+-+
T Consensus 151 PhelSGGMrQRV~IAmala~~P~LlIADEPTTALDvt~QaqIl~-Ll~~l~~ 201 (316)
T COG0444 151 PHELSGGMRQRVMIAMALALNPKLLIADEPTTALDVTVQAQILD-LLKELQR 201 (316)
T ss_pred CcccCCcHHHHHHHHHHHhCCCCEEEeCCCcchhhHHHHHHHHH-HHHHHHH
Confidence 46999999999999999999999999999999999999999976 4444443
No 337
>PLN03073 ABC transporter F family; Provisional
Probab=99.98 E-value=1.6e-31 Score=266.54 Aligned_cols=156 Identities=22% Similarity=0.324 Sum_probs=124.5
Q ss_pred CcEEEEeEEEEeCCCCCCcceeeceEEEcCCcEEEEEcCCCChHHHHHHHHhcCcCCCccEEEEcC--eEEEEecCCCCc
Q psy1503 87 GHVSLDNVTAQWSLQNADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSLGG--TVSYASQEPWIF 164 (265)
Q Consensus 87 ~~i~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g--~i~~v~Q~~~l~ 164 (265)
..++++|++++|++ ..++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.+++ .++|++|++. .
T Consensus 507 ~~L~~~~ls~~y~~--~~~il~~vsl~i~~Ge~i~LvG~NGsGKSTLLk~L~Gll~p~~G~I~~~~~~~igyv~Q~~~-~ 583 (718)
T PLN03073 507 PIISFSDASFGYPG--GPLLFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGELQPSSGTVFRSAKVRMAVFSQHHV-D 583 (718)
T ss_pred ceEEEEeeEEEeCC--CCeeEeccEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCceEEECCceeEEEEecccc-c
Confidence 47999999999953 24589999999999999999999999999999999999999999999876 4999999863 2
Q ss_pred cccHHHHHhcC-----CcccHHHHHHHHHHhcchhHHhcCCCCCccccCCCCCCCCHHHHHHHHHHHHHccCCCEEEEeC
Q psy1503 165 AATIRQNILFG-----LPYLRRRYADVIRVCALQDDFDSLPNGDFTVVGERGASLSGGQKARINLARAVYKNADIYLLDD 239 (265)
Q Consensus 165 ~~ti~eni~~~-----~~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~vg~~g~~LSgGqrqRialARal~~~~~illLDE 239 (265)
..++.+|..+. .....+++.++++.+++..+. .......||||||||++||||++.+|+++||||
T Consensus 584 ~l~~~~~~~~~~~~~~~~~~~~~i~~~L~~~gl~~~~----------~~~~~~~LSgGqkqRvaLAraL~~~p~lLLLDE 653 (718)
T PLN03073 584 GLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNL----------ALQPMYTLSGGQKSRVAFAKITFKKPHILLLDE 653 (718)
T ss_pred cCCcchhHHHHHHHhcCCCCHHHHHHHHHHCCCChHH----------hcCCccccCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 23455553211 112344555666666664322 123457899999999999999999999999999
Q ss_pred CCCCcCHHHHHHHHHH
Q psy1503 240 PLSAVDMHVGKHLFED 255 (265)
Q Consensus 240 p~s~LD~~~~~~i~~~ 255 (265)
||++||+.+...+.+.
T Consensus 654 PT~~LD~~s~~~l~~~ 669 (718)
T PLN03073 654 PSNHLDLDAVEALIQG 669 (718)
T ss_pred CCCCCCHHHHHHHHHH
Confidence 9999999998887553
No 338
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.98 E-value=1.5e-31 Score=257.51 Aligned_cols=160 Identities=30% Similarity=0.443 Sum_probs=127.0
Q ss_pred cEEEEeEEEEeCCCCCCcceeeceEEEcCCcEEEEEcCCCChHHHHHHHHhcCcCCCccEEEEcC--eEEEEecCCCCcc
Q psy1503 88 HVSLDNVTAQWSLQNADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSLGG--TVSYASQEPWIFA 165 (265)
Q Consensus 88 ~i~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g--~i~~v~Q~~~l~~ 165 (265)
.|+++|++++|+ ++++++++||++.+|+.+||||+|||||||||++|+|...|++|+|...+ +++|++|++.+.+
T Consensus 3 ~i~~~~ls~~~g---~~~l~~~~~l~~~~G~riGLvG~NGaGKSTLLkilaG~~~~~~G~i~~~~~~~v~~l~Q~~~~~~ 79 (530)
T COG0488 3 MITLENLSLAYG---DRPLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPDSGEVTRPKGLRVGYLSQEPPLDP 79 (530)
T ss_pred eEEEeeeEEeeC---CceeecCCcceeCCCCEEEEECCCCCCHHHHHHHHcCCCcCCCCeEeecCCceEEEeCCCCCcCC
Confidence 589999999995 46799999999999999999999999999999999999999999999987 6999999999986
Q ss_pred c-cHHHHHhcCCccc---HHHHHHHHHH-------------------------hcchhHHhcCCCCCccccCCCCCCCCH
Q psy1503 166 A-TIRQNILFGLPYL---RRRYADVIRV-------------------------CALQDDFDSLPNGDFTVVGERGASLSG 216 (265)
Q Consensus 166 ~-ti~eni~~~~~~~---~~~~~~~~~~-------------------------~~l~~~i~~l~~g~~t~vg~~g~~LSg 216 (265)
. |+.+.+.-+.... ..+++.+... ..+...+..+ |.... .....+|||
T Consensus 80 ~~tv~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~L~gL--g~~~~-~~~~~~LSG 156 (530)
T COG0488 80 EKTVLDYVIEGFGELRELLAELEEAYALLADPDDELLAELEALLEELDGWTLEARAEEALLGL--GFPDE-DRPVSSLSG 156 (530)
T ss_pred CccHHHHHHhhhHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHhhcccchHHHHHHHHhcC--CCCcc-cCchhhcCH
Confidence 5 9999988765321 1111111100 0111122222 22222 345678999
Q ss_pred HHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHH
Q psy1503 217 GQKARINLARAVYKNADIYLLDDPLSAVDMHVGKHLF 253 (265)
Q Consensus 217 GqrqRialARal~~~~~illLDEp~s~LD~~~~~~i~ 253 (265)
|||.|++|||||+.+||+|||||||++||..+...+-
T Consensus 157 G~r~Rv~LA~aL~~~pDlLLLDEPTNHLD~~~i~WLe 193 (530)
T COG0488 157 GWRRRVALARALLEEPDLLLLDEPTNHLDLESIEWLE 193 (530)
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHH
Confidence 9999999999999999999999999999999988763
No 339
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=99.98 E-value=6.5e-32 Score=251.85 Aligned_cols=154 Identities=25% Similarity=0.459 Sum_probs=131.2
Q ss_pred CcEEEEeEEEEeCCCCCCcceeeceEEEcCCcEEEEEcCCCChHHHHHHHHhcCcCCCccEEEEcCe-------------
Q psy1503 87 GHVSLDNVTAQWSLQNADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSLGGT------------- 153 (265)
Q Consensus 87 ~~i~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g~------------- 153 (265)
..++++++++.|+. ..+.++|||++++||+.|++|.||+|||||+++|.|+|+|++|+|.++|+
T Consensus 3 ~~l~~~~itK~f~~---~~And~V~l~v~~GeIHaLLGENGAGKSTLm~iL~G~~~P~~GeI~v~G~~v~~~sP~dA~~~ 79 (501)
T COG3845 3 PALEMRGITKRFPG---VVANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPDSGEIRVDGKEVRIKSPRDAIRL 79 (501)
T ss_pred ceEEEeccEEEcCC---EEecCceeeeecCCcEEEEeccCCCCHHHHHHHHhCcccCCcceEEECCEEeccCCHHHHHHc
Confidence 36899999999973 45899999999999999999999999999999999999999999999995
Q ss_pred -EEEEecCCCCcc-ccHHHHHhcCCcc------c----HHHHHHHHHHhcchhHHhcCCCCCccccCCCCCCCCHHHHHH
Q psy1503 154 -VSYASQEPWIFA-ATIRQNILFGLPY------L----RRRYADVIRVCALQDDFDSLPNGDFTVVGERGASLSGGQKAR 221 (265)
Q Consensus 154 -i~~v~Q~~~l~~-~ti~eni~~~~~~------~----~~~~~~~~~~~~l~~~i~~l~~g~~t~vg~~g~~LSgGqrqR 221 (265)
||+|.|++.|++ .|+.|||.+|.+. + .+++.+..+..++.-+ ..+....||-|+|||
T Consensus 80 GIGMVhQHF~Lv~~lTV~ENiiLg~e~~~~~~~~~~~~~~~i~~l~~~yGl~vd-----------p~~~V~dLsVG~qQR 148 (501)
T COG3845 80 GIGMVHQHFMLVPTLTVAENIILGLEPSKGGLIDRRQARARIKELSERYGLPVD-----------PDAKVADLSVGEQQR 148 (501)
T ss_pred CCcEEeeccccccccchhhhhhhcCccccccccCHHHHHHHHHHHHHHhCCCCC-----------ccceeecCCcchhHH
Confidence 999999999997 5999999998753 1 1233333344443222 124456899999999
Q ss_pred HHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHH
Q psy1503 222 INLARAVYKNADIYLLDDPLSAVDMHVGKHLFE 254 (265)
Q Consensus 222 ialARal~~~~~illLDEp~s~LD~~~~~~i~~ 254 (265)
|.|-+|||++|+++|||||||-|-+...+++|+
T Consensus 149 VEIlKaLyr~a~iLILDEPTaVLTP~E~~~lf~ 181 (501)
T COG3845 149 VEILKALYRGARLLILDEPTAVLTPQEADELFE 181 (501)
T ss_pred HHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHH
Confidence 999999999999999999999999999999887
No 340
>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.97 E-value=1.5e-32 Score=230.13 Aligned_cols=153 Identities=31% Similarity=0.509 Sum_probs=128.4
Q ss_pred cEEEEeEEEEeCCCCCCcceeeceEEEcCCcEEEEEcCCCChHHHHHHHHhcCcCCCccEEEEcCe-------------E
Q psy1503 88 HVSLDNVTAQWSLQNADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSLGGT-------------V 154 (265)
Q Consensus 88 ~i~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g~-------------i 154 (265)
+|+++|++++|++ +.+++++|++|++|.+++++||||||||||++++++++++++|+|.++|. +
T Consensus 1 MI~i~nv~K~y~~---~~vl~~isl~i~~g~iTs~IGPNGAGKSTLLS~~sRL~~~d~G~i~i~g~~~~~~~s~~LAk~l 77 (252)
T COG4604 1 MITIENVSKSYGT---KVVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKKDSGEITIDGLELTSTPSKELAKKL 77 (252)
T ss_pred CeeehhhhHhhCC---EEeeccceeeecCCceeEEECCCCccHHHHHHHHHHhccccCceEEEeeeecccCChHHHHHHH
Confidence 4789999999963 57999999999999999999999999999999999999999999999994 7
Q ss_pred EEEecCCCCcc-ccHHHHHhcCC-ccc--------HHHHHHHHHHhcchhHHhcCCCCCccccCCCCCCCCHHHHHHHHH
Q psy1503 155 SYASQEPWIFA-ATIRQNILFGL-PYL--------RRRYADVIRVCALQDDFDSLPNGDFTVVGERGASLSGGQKARINL 224 (265)
Q Consensus 155 ~~v~Q~~~l~~-~ti~eni~~~~-~~~--------~~~~~~~~~~~~l~~~i~~l~~g~~t~vg~~g~~LSgGqrqRial 224 (265)
+.+-|+..+-. -||+|=+.||+ ||+ +..+.++++...|.+.- ++.-.+||||||||.-+
T Consensus 78 SILkQ~N~i~~rlTV~dLv~FGRfPYSqGRlt~eD~~~I~~aieyl~L~~l~-----------dryLd~LSGGQrQRAfI 146 (252)
T COG4604 78 SILKQENHINSRLTVRDLVGFGRFPYSQGRLTKEDRRIINEAIEYLHLEDLS-----------DRYLDELSGGQRQRAFI 146 (252)
T ss_pred HHHHhhchhhheeEHHHHhhcCCCcccCCCCchHHHHHHHHHHHHhcccchH-----------HHhHHhcccchhhhhhh
Confidence 88899988775 59999999986 442 22344455544443221 12235899999999999
Q ss_pred HHHHccCCCEEEEeCCCCCcCHHHHHHHHH
Q psy1503 225 ARAVYKNADIYLLDDPLSAVDMHVGKHLFE 254 (265)
Q Consensus 225 ARal~~~~~illLDEp~s~LD~~~~~~i~~ 254 (265)
|..++++.|.++||||+++||......+++
T Consensus 147 AMVlaQdTdyvlLDEPLNNLDmkHsv~iMk 176 (252)
T COG4604 147 AMVLAQDTDYVLLDEPLNNLDMKHSVQIMK 176 (252)
T ss_pred heeeeccCcEEEecCcccccchHHHHHHHH
Confidence 999999999999999999999998888765
No 341
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=99.97 E-value=1e-31 Score=259.67 Aligned_cols=155 Identities=16% Similarity=0.350 Sum_probs=120.6
Q ss_pred CcEEEEeEEEEeCCCCCCcceeeceEEEcCCcEEEEEcCCCChHHHHHHHHhcCcCCCccEEEEcCe-------------
Q psy1503 87 GHVSLDNVTAQWSLQNADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSLGGT------------- 153 (265)
Q Consensus 87 ~~i~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g~------------- 153 (265)
..++++|+++ .+|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.
T Consensus 267 ~~l~~~~l~~--------~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 338 (510)
T PRK15439 267 PVLTVEDLTG--------EGFRNISLEVRAGEILGLAGVVGAGRTELAETLYGLRPARGGRIMLNGKEINALSTAQRLAR 338 (510)
T ss_pred ceEEEeCCCC--------CCccceeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEECCCCCHHHHHhC
Confidence 3688998873 1599999999999999999999999999999999999999999999872
Q ss_pred -EEEEecCC---CCcc-ccHHHHHhcCC----cc--cH----HHHHHHHHHhcchhHHhcCCCCCccccCCCCCCCCHHH
Q psy1503 154 -VSYASQEP---WIFA-ATIRQNILFGL----PY--LR----RRYADVIRVCALQDDFDSLPNGDFTVVGERGASLSGGQ 218 (265)
Q Consensus 154 -i~~v~Q~~---~l~~-~ti~eni~~~~----~~--~~----~~~~~~~~~~~l~~~i~~l~~g~~t~vg~~g~~LSgGq 218 (265)
++|+||++ .+|+ .|+.+|+.... .. .. ++..++++.+++. + .....+...|||||
T Consensus 339 ~i~~v~q~~~~~~l~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~------~----~~~~~~~~~LSgG~ 408 (510)
T PRK15439 339 GLVYLPEDRQSSGLYLDAPLAWNVCALTHNRRGFWIKPARENAVLERYRRALNIK------F----NHAEQAARTLSGGN 408 (510)
T ss_pred CcEECCCChhhCCccCCCcHHHHHHhhhhhhhccccChHHHHHHHHHHHHHcCCC------C----CCccCccccCCcHH
Confidence 89999985 3665 59999985320 10 11 1112222222221 0 12345667899999
Q ss_pred HHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHH
Q psy1503 219 KARINLARAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGC 260 (265)
Q Consensus 219 rqRialARal~~~~~illLDEp~s~LD~~~~~~i~~~~i~~~ 260 (265)
|||++|||||+.+|+|+||||||++||+.+.+.+.+ .+..+
T Consensus 409 kqrl~la~al~~~p~lLlLDEPt~gLD~~~~~~l~~-~l~~l 449 (510)
T PRK15439 409 QQKVLIAKCLEASPQLLIVDEPTRGVDVSARNDIYQ-LIRSI 449 (510)
T ss_pred HHHHHHHHHHhhCCCEEEECCCCcCcChhHHHHHHH-HHHHH
Confidence 999999999999999999999999999999998865 44444
No 342
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=99.97 E-value=2.1e-31 Score=256.28 Aligned_cols=162 Identities=22% Similarity=0.318 Sum_probs=121.6
Q ss_pred CcEEEEeEEEEeCCCCCCcceeeceEEEcCCcEEEEEcCCCChHHHHHHHHhcCcCCCccEEEEcCe-------------
Q psy1503 87 GHVSLDNVTAQWSLQNADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSLGGT------------- 153 (265)
Q Consensus 87 ~~i~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g~------------- 153 (265)
..|+++|+++.+ ..+|+++||+|++|++++|+||||||||||+++|+|+.+|++|+|.++|.
T Consensus 249 ~~i~~~~l~~~~-----~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 323 (491)
T PRK10982 249 VILEVRNLTSLR-----QPSIRDVSFDLHKGEILGIAGLVGAKRTDIVETLFGIREKSAGTITLHGKKINNHNANEAINH 323 (491)
T ss_pred cEEEEeCccccc-----CcccceeeEEEeCCcEEEEecCCCCCHHHHHHHHcCCCcCCccEEEECCEECCCCCHHHHHHC
Confidence 468999999874 24899999999999999999999999999999999999999999999872
Q ss_pred -EEEEecCC---CCcc-ccHHHHHhcC-----Cc----ccHHHHHHHHHHhcchhHHhcCCCCCccccCCCCCCCCHHHH
Q psy1503 154 -VSYASQEP---WIFA-ATIRQNILFG-----LP----YLRRRYADVIRVCALQDDFDSLPNGDFTVVGERGASLSGGQK 219 (265)
Q Consensus 154 -i~~v~Q~~---~l~~-~ti~eni~~~-----~~----~~~~~~~~~~~~~~l~~~i~~l~~g~~t~vg~~g~~LSgGqr 219 (265)
++|++|++ .+|+ .|+.+|+.+. .. .......+ ...+.+..+.-+. -.......+||||||
T Consensus 324 ~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~~l~~-~~~~~~~~~LSgGq~ 397 (491)
T PRK10982 324 GFALVTEERRSTGIYAYLDIGFNSLISNIRNYKNKVGLLDNSRMKS-----DTQWVIDSMRVKT-PGHRTQIGSLSGGNQ 397 (491)
T ss_pred CCEEcCCchhhCCcccCCcHHHheehhhhhhhcccccccCcHHHHH-----HHHHHHHhcCccC-CCcccccccCCcHHH
Confidence 78999985 3565 4777663221 11 01111111 1111222221110 113456789999999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHH
Q psy1503 220 ARINLARAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGC 260 (265)
Q Consensus 220 qRialARal~~~~~illLDEp~s~LD~~~~~~i~~~~i~~~ 260 (265)
||++||||++.+|+|+||||||++||+.+.+.+++ .+..+
T Consensus 398 qrv~la~al~~~p~illLDEPt~gLD~~~~~~~~~-~l~~l 437 (491)
T PRK10982 398 QKVIIGRWLLTQPEILMLDEPTRGIDVGAKFEIYQ-LIAEL 437 (491)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCcccChhHHHHHHH-HHHHH
Confidence 99999999999999999999999999999999866 44444
No 343
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=99.97 E-value=6.3e-31 Score=260.14 Aligned_cols=160 Identities=23% Similarity=0.347 Sum_probs=119.3
Q ss_pred cEEEEeEEEEeCCCCCCcceeeceEEEcCCcEEEEEcCCCChHHHHHHHHhcCcCCCccEEEEcCe--EEEEecCCCCc-
Q psy1503 88 HVSLDNVTAQWSLQNADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSLGGT--VSYASQEPWIF- 164 (265)
Q Consensus 88 ~i~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g~--i~~v~Q~~~l~- 164 (265)
+|+++|++++|+. .++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|. ++|++|.+...
T Consensus 3 ~l~i~~ls~~~~~---~~il~~is~~i~~Ge~v~LvG~NGsGKSTLLriiaG~~~p~~G~I~~~~~~~~~~l~q~~~~~~ 79 (635)
T PRK11147 3 LISIHGAWLSFSD---APLLDNAELHIEDNERVCLVGRNGAGKSTLMKILNGEVLLDDGRIIYEQDLIVARLQQDPPRNV 79 (635)
T ss_pred EEEEeeEEEEeCC---ceeEeCcEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEeCCCCEEEEeccCCCCCC
Confidence 5899999999963 46999999999999999999999999999999999999999999999874 78999976432
Q ss_pred cccHHHHHhcCCcc-------------------cHHH---HHHH---HH-------HhcchhHHhcCCCCCccccCCCCC
Q psy1503 165 AATIRQNILFGLPY-------------------LRRR---YADV---IR-------VCALQDDFDSLPNGDFTVVGERGA 212 (265)
Q Consensus 165 ~~ti~eni~~~~~~-------------------~~~~---~~~~---~~-------~~~l~~~i~~l~~g~~t~vg~~g~ 212 (265)
.+++.+++..+... ..+. +..+ +. ...+...+..+ |.. ......
T Consensus 80 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l--gl~--~~~~~~ 155 (635)
T PRK11147 80 EGTVYDFVAEGIEEQAEYLKRYHDISHLVETDPSEKNLNELAKLQEQLDHHNLWQLENRINEVLAQL--GLD--PDAALS 155 (635)
T ss_pred CCCHHHHHHHhhHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHhC--CCC--CCCchh
Confidence 35777765422100 0000 0000 00 00011122222 111 134567
Q ss_pred CCCHHHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHH
Q psy1503 213 SLSGGQKARINLARAVYKNADIYLLDDPLSAVDMHVGKHLFE 254 (265)
Q Consensus 213 ~LSgGqrqRialARal~~~~~illLDEp~s~LD~~~~~~i~~ 254 (265)
.|||||||||+|||||+.+|+|+||||||++||+.+...+.+
T Consensus 156 ~LSgGekqRv~LAraL~~~P~lLLLDEPt~~LD~~~~~~L~~ 197 (635)
T PRK11147 156 SLSGGWLRKAALGRALVSNPDVLLLDEPTNHLDIETIEWLEG 197 (635)
T ss_pred hcCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHH
Confidence 899999999999999999999999999999999999988754
No 344
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=99.97 E-value=3.3e-30 Score=248.26 Aligned_cols=165 Identities=24% Similarity=0.378 Sum_probs=145.7
Q ss_pred CCcEEEEeEEEEeCCCCCCcceeeceEEEcCCcEEEEEcCCCChHHHHHHHHhcCcCCCccEEEEcC--eEEEEecCCCC
Q psy1503 86 KGHVSLDNVTAQWSLQNADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSLGG--TVSYASQEPWI 163 (265)
Q Consensus 86 ~~~i~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g--~i~~v~Q~~~l 163 (265)
...|+++|++..-+. .++.+++.+|++++|+.+-|.||||||||||+++|+|+.+--+|+|.... .+-|+||.|.+
T Consensus 390 ~~~i~~~nl~l~~p~--~~~ll~~l~~~v~~G~~llI~G~SG~GKTsLlRaiaGLWP~g~G~I~~P~~~~~lflpQ~PY~ 467 (604)
T COG4178 390 DHGITLENLSLRTPD--GQTLLSELNFEVRPGERLLITGESGAGKTSLLRALAGLWPWGSGRISMPADSALLFLPQRPYL 467 (604)
T ss_pred cceeEEeeeeEECCC--CCeeeccceeeeCCCCEEEEECCCCCCHHHHHHHHhccCccCCCceecCCCCceEEecCCCCC
Confidence 467999999998764 35789999999999999999999999999999999999999999998863 38999999999
Q ss_pred ccccHHHHHhcCCc---ccHHHHHHHHHHhcchhHHhcCCCCCccccCCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCC
Q psy1503 164 FAATIRQNILFGLP---YLRRRYADVIRVCALQDDFDSLPNGDFTVVGERGASLSGGQKARINLARAVYKNADIYLLDDP 240 (265)
Q Consensus 164 ~~~ti~eni~~~~~---~~~~~~~~~~~~~~l~~~i~~l~~g~~t~vg~~g~~LSgGqrqRialARal~~~~~illLDEp 240 (265)
-.||+||-|++... +.++.+.+++..|+|.+..+++..-.+ =...||+|||||||+||.++++|++++|||+
T Consensus 468 p~GtLre~l~YP~~~~~~~d~~l~~vL~~vgL~~L~~rl~~~~~-----W~~vLS~GEqQRlafARilL~kP~~v~LDEA 542 (604)
T COG4178 468 PQGTLREALCYPNAAPDFSDAELVAVLHKVGLGDLAERLDEEDR-----WDRVLSGGEQQRLAFARLLLHKPKWVFLDEA 542 (604)
T ss_pred CCccHHHHHhCCCCCCCCChHHHHHHHHHcCcHHHHHHHhccCc-----HhhhcChhHHHHHHHHHHHHcCCCEEEEecc
Confidence 99999999999753 467889999999999998887653221 2357999999999999999999999999999
Q ss_pred CCCcCHHHHHHHHHHHH
Q psy1503 241 LSAVDMHVGKHLFEDCI 257 (265)
Q Consensus 241 ~s~LD~~~~~~i~~~~i 257 (265)
|||||+.++..+++..-
T Consensus 543 TsALDe~~e~~l~q~l~ 559 (604)
T COG4178 543 TSALDEETEDRLYQLLK 559 (604)
T ss_pred hhccChHHHHHHHHHHH
Confidence 99999999999987543
No 345
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=99.97 E-value=1.3e-30 Score=238.06 Aligned_cols=157 Identities=24% Similarity=0.433 Sum_probs=130.3
Q ss_pred CCcEEEEeEEEEeCCCC--------CCcceeeceEEEcCCcEEEEEcCCCChHHHHHHHHhcCcCCCccEEEEcCe----
Q psy1503 86 KGHVSLDNVTAQWSLQN--------ADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSLGGT---- 153 (265)
Q Consensus 86 ~~~i~~~~~~~~~~~~~--------~~~~l~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g~---- 153 (265)
...++.+++...|+-+. .-.+++++||++++|+.++|||.||||||||-.+|++++++. |+|.++|.
T Consensus 274 ~~ll~~~~v~v~f~i~~g~~~r~~~~~~AVd~isl~L~~gqTlGlVGESGSGKsTlG~allrL~~s~-G~I~F~G~~i~~ 352 (534)
T COG4172 274 PVLLEVEDLRVWFPIKGGFLRRTVDHLRAVDGISLTLRRGQTLGLVGESGSGKSTLGLALLRLIPSQ-GEIRFDGQDIDG 352 (534)
T ss_pred CceEEecceEEEEecCCccccccchheEEeccceeEecCCCeEEEEecCCCCcchHHHHHHhhcCcC-ceEEECCccccc
Confidence 45789999998886432 134789999999999999999999999999999999999877 99999984
Q ss_pred ------------EEEEecCCC--Ccc-ccHHHHHhcCCcc---------cHHHHHHHHHHhcchhHH-hcCCCCCccccC
Q psy1503 154 ------------VSYASQEPW--IFA-ATIRQNILFGLPY---------LRRRYADVIRVCALQDDF-DSLPNGDFTVVG 208 (265)
Q Consensus 154 ------------i~~v~Q~~~--l~~-~ti~eni~~~~~~---------~~~~~~~~~~~~~l~~~i-~~l~~g~~t~vg 208 (265)
+-.|+|||+ |-+ .||.+-|.-|... .++++.++++.++++... .+.|
T Consensus 353 ~~~~~mrplR~~mQvVFQDPygSLsPRmtV~qII~EGL~vh~~~ls~~eR~~rv~~aL~EVGLDp~~r~RYP-------- 424 (534)
T COG4172 353 LSRKEMRPLRRRMQVVFQDPYGSLSPRMTVGQIIEEGLRVHEPKLSAAERDQRVIEALEEVGLDPATRNRYP-------- 424 (534)
T ss_pred cChhhhhhhhhhceEEEeCCCCCCCcccCHHHHhhhhhhhcCCCCCHHHHHHHHHHHHHHcCCChhHhhcCC--------
Confidence 899999997 444 5888888755321 134556677778887643 3444
Q ss_pred CCCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHH
Q psy1503 209 ERGASLSGGQKARINLARAVYKNADIYLLDDPLSAVDMHVGKHLFE 254 (265)
Q Consensus 209 ~~g~~LSgGqrqRialARal~~~~~illLDEp~s~LD~~~~~~i~~ 254 (265)
.++|||||||||||||++-+|++++||||||+||..+..+|.+
T Consensus 425 ---hEFSGGQRQRIAIARAliLkP~~i~LDEPTSALD~SVQaQvv~ 467 (534)
T COG4172 425 ---HEFSGGQRQRIAIARALILKPELILLDEPTSALDRSVQAQVLD 467 (534)
T ss_pred ---cccCcchhhHHHHHHHHhcCCcEEEecCCchHhhHHHHHHHHH
Confidence 5899999999999999999999999999999999999999976
No 346
>TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit. This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).
Probab=99.97 E-value=3.8e-31 Score=242.37 Aligned_cols=128 Identities=31% Similarity=0.503 Sum_probs=103.4
Q ss_pred EEcCCCChHHHHHHHHhcCcCCCccEEEEcCe-----------EEEEecCCCCcc-ccHHHHHhcCCcc---c----HHH
Q psy1503 122 IIGAIGAGKTSLLHIILNELRISSGKVSLGGT-----------VSYASQEPWIFA-ATIRQNILFGLPY---L----RRR 182 (265)
Q Consensus 122 ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g~-----------i~~v~Q~~~l~~-~ti~eni~~~~~~---~----~~~ 182 (265)
|+||||||||||+++|+|+++|++|+|.++|. ++|++|++.+|+ .|++||+.|+... . .++
T Consensus 1 l~G~nGsGKSTLl~~iaGl~~p~~G~I~i~g~~i~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~ 80 (325)
T TIGR01187 1 LLGPSGCGKTTLLRLLAGFEQPDSGSIMLDGEDVTNVPPHLRHINMVFQSYALFPHMTVEENVAFGLKMRKVPRAEIKPR 80 (325)
T ss_pred CcCCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEEEecCccccCCCcHHHHHHHHHhhcCCCHHHHHHH
Confidence 68999999999999999999999999999883 899999999997 4999999986321 1 123
Q ss_pred HHHHHHHhcchhHHhcCCCCCccccCCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHHh
Q psy1503 183 YADVIRVCALQDDFDSLPNGDFTVVGERGASLSGGQKARINLARAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGCL 261 (265)
Q Consensus 183 ~~~~~~~~~l~~~i~~l~~g~~t~vg~~g~~LSgGqrqRialARal~~~~~illLDEp~s~LD~~~~~~i~~~~i~~~l 261 (265)
+.++++.+++.+.. .....+||||||||++|||||+++|+++||||||++||+.+...+.+ .+..+.
T Consensus 81 ~~~~l~~~~l~~~~-----------~~~~~~LSgGq~qRvalaraL~~~p~lllLDEP~s~LD~~~~~~l~~-~l~~l~ 147 (325)
T TIGR01187 81 VLEALRLVQLEEFA-----------DRKPHQLSGGQQQRVALARALVFKPKILLLDEPLSALDKKLRDQMQL-ELKTIQ 147 (325)
T ss_pred HHHHHHHcCCcchh-----------cCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCHHHHHHHHH-HHHHHH
Confidence 34444544443333 34457899999999999999999999999999999999999988865 444443
No 347
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=99.97 E-value=6.1e-31 Score=227.24 Aligned_cols=157 Identities=28% Similarity=0.430 Sum_probs=123.6
Q ss_pred CCcEEEEeEEEEeCCCCCCcceeeceEEEcCCcEEEEEcCCCChHHHHHHHHhcCcCCCccEEEEcCe------------
Q psy1503 86 KGHVSLDNVTAQWSLQNADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSLGGT------------ 153 (265)
Q Consensus 86 ~~~i~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g~------------ 153 (265)
...|+++|+++.|+ ++++|+|+|++|++||..+|+||||||||||++++.|.++|++|.+.+-|+
T Consensus 29 ~~li~l~~v~v~r~---gk~iL~~isW~V~~ge~W~I~G~NGsGKTTLL~ll~~~~~pssg~~~~~G~~~G~~~~~~elr 105 (257)
T COG1119 29 EPLIELKNVSVRRN---GKKILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHPPSSGDVTLLGRRFGKGETIFELR 105 (257)
T ss_pred cceEEecceEEEEC---CEeeccccceeecCCCcEEEECCCCCCHHHHHHHHhcccCCCCCceeeeeeeccCCcchHHHH
Confidence 35699999999995 467999999999999999999999999999999999999999999988773
Q ss_pred --EEEEecCCC-Cc--cccHHHHHhcCC---------cccHHHHH---HHHHHhcchhHHhcCCCCCccccCCCCCCCCH
Q psy1503 154 --VSYASQEPW-IF--AATIRQNILFGL---------PYLRRRYA---DVIRVCALQDDFDSLPNGDFTVVGERGASLSG 216 (265)
Q Consensus 154 --i~~v~Q~~~-l~--~~ti~eni~~~~---------~~~~~~~~---~~~~~~~l~~~i~~l~~g~~t~vg~~g~~LSg 216 (265)
||+|+-+-. -| +.+++|-+.-|. .++++.+. ..++.+++.. ..+..-..||-
T Consensus 106 k~IG~vS~~L~~~~~~~~~v~dvVlSg~~~siG~y~~~~~~~~~~~a~~lle~~g~~~-----------la~r~~~~LS~ 174 (257)
T COG1119 106 KRIGLVSSELHERFRVRETVRDVVLSGFFASIGIYQEDLTAEDLAAAQWLLELLGAKH-----------LADRPFGSLSQ 174 (257)
T ss_pred HHhCccCHHHHhhcccccccceeeeecccccccccccCCCHHHHHHHHHHHHHcchhh-----------hccCchhhcCH
Confidence 888875422 12 347888776442 12222222 2233333322 33455679999
Q ss_pred HHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHH
Q psy1503 217 GQKARINLARAVYKNADIYLLDDPLSAVDMHVGKHLFEDC 256 (265)
Q Consensus 217 GqrqRialARal~~~~~illLDEp~s~LD~~~~~~i~~~~ 256 (265)
|||||+-|||||+.+|.++|||||+++||...++.+.+..
T Consensus 175 Ge~rrvLiaRALv~~P~LLiLDEP~~GLDl~~re~ll~~l 214 (257)
T COG1119 175 GEQRRVLIARALVKDPELLILDEPAQGLDLIAREQLLNRL 214 (257)
T ss_pred hHHHHHHHHHHHhcCCCEEEecCccccCChHHHHHHHHHH
Confidence 9999999999999999999999999999999988775543
No 348
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.97 E-value=3.7e-31 Score=228.14 Aligned_cols=160 Identities=21% Similarity=0.373 Sum_probs=130.0
Q ss_pred cEEEEeEEEEeCCCCCCcceeeceEEEcCCcEEEEEcCCCChHHHHHHHHhcCcCCCccEEEEcC---------eEEEEe
Q psy1503 88 HVSLDNVTAQWSLQNADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSLGG---------TVSYAS 158 (265)
Q Consensus 88 ~i~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g---------~i~~v~ 158 (265)
.+++++|+++|+ ++.+++|+||++++|++.+++|||||||||.+++|+|+++|++|+|.++| +|||+|
T Consensus 2 ~L~ie~vtK~Fg---~k~av~~isf~v~~G~i~GllG~NGAGKTTtfRmILglle~~~G~I~~~g~~~~~~~~~rIGyLP 78 (300)
T COG4152 2 ALEIEGVTKSFG---DKKAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEPTEGEITWNGGPLSQEIKNRIGYLP 78 (300)
T ss_pred ceEEecchhccC---ceeeecceeeeecCCeEEEeecCCCCCccchHHHHhccCCccCceEEEcCcchhhhhhhhcccCh
Confidence 589999999996 35689999999999999999999999999999999999999999999999 599999
Q ss_pred cCCCCcc-ccHHHHHhcCCc---ccHHHHHHHHHHhcchhHHhcCCCCCccccCCCCCCCCHHHHHHHHHHHHHccCCCE
Q psy1503 159 QEPWIFA-ATIRQNILFGLP---YLRRRYADVIRVCALQDDFDSLPNGDFTVVGERGASLSGGQKARINLARAVYKNADI 234 (265)
Q Consensus 159 Q~~~l~~-~ti~eni~~~~~---~~~~~~~~~~~~~~l~~~i~~l~~g~~t~vg~~g~~LSgGqrqRialARal~~~~~i 234 (265)
.+.-|++ .||.|.+.|... ....+..+ .+..+++++.-.. ....+..+||-|.+|+|-+--|++++|++
T Consensus 79 EERGLy~k~tv~dql~yla~LkGm~~~e~~~-----~~~~wLer~~i~~--~~~~kIk~LSKGnqQKIQfisaviHePeL 151 (300)
T COG4152 79 EERGLYPKMTVEDQLKYLAELKGMPKAEIQK-----KLQAWLERLEIVG--KKTKKIKELSKGNQQKIQFISAVIHEPEL 151 (300)
T ss_pred hhhccCccCcHHHHHHHHHHhcCCcHHHHHH-----HHHHHHHhccccc--cccchHHHhhhhhhHHHHHHHHHhcCCCE
Confidence 9999996 599999987432 22222222 1223344432111 12356678999999999999999999999
Q ss_pred EEEeCCCCCcCHHHHHHHHHHHH
Q psy1503 235 YLLDDPLSAVDMHVGKHLFEDCI 257 (265)
Q Consensus 235 llLDEp~s~LD~~~~~~i~~~~i 257 (265)
+||||||||||+...+.+-+..+
T Consensus 152 lILDEPFSGLDPVN~elLk~~I~ 174 (300)
T COG4152 152 LILDEPFSGLDPVNVELLKDAIF 174 (300)
T ss_pred EEecCCccCCChhhHHHHHHHHH
Confidence 99999999999999877644433
No 349
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.97 E-value=3.9e-30 Score=211.67 Aligned_cols=112 Identities=35% Similarity=0.624 Sum_probs=98.3
Q ss_pred EEeEEEEeCCCCCCcceeeceEEEcCCcEEEEEcCCCChHHHHHHHHhcCcCCCccEEEEcCe-------------EEEE
Q psy1503 91 LDNVTAQWSLQNADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSLGGT-------------VSYA 157 (265)
Q Consensus 91 ~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g~-------------i~~v 157 (265)
+++++|.|+. .++++++||+|++|++++|+|+||||||||+++|.|+++|++|+|.++|. ++|+
T Consensus 2 ~~~~~~~~~~---~~~l~~~~~~i~~g~~~~i~G~nGsGKStll~~l~g~~~~~~G~i~~~~~~~~~~~~~~~~~~i~~~ 78 (157)
T cd00267 2 IENLSFRYGG---RTALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEILIDGKDIAKLPLEELRRRIGYV 78 (157)
T ss_pred eEEEEEEeCC---eeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccCCHHHHHhceEEE
Confidence 6789999963 36899999999999999999999999999999999999999999999873 2222
Q ss_pred ecCCCCccccHHHHHhcCCcccHHHHHHHHHHhcchhHHhcCCCCCccccCCCCCCCCHHHHHHHHHHHHHccCCCEEEE
Q psy1503 158 SQEPWIFAATIRQNILFGLPYLRRRYADVIRVCALQDDFDSLPNGDFTVVGERGASLSGGQKARINLARAVYKNADIYLL 237 (265)
Q Consensus 158 ~Q~~~l~~~ti~eni~~~~~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~vg~~g~~LSgGqrqRialARal~~~~~illL 237 (265)
+| |||||+||++||||++.+|++++|
T Consensus 79 ~q------------------------------------------------------lS~G~~~r~~l~~~l~~~~~i~il 104 (157)
T cd00267 79 PQ------------------------------------------------------LSGGQRQRVALARALLLNPDLLLL 104 (157)
T ss_pred ee------------------------------------------------------CCHHHHHHHHHHHHHhcCCCEEEE
Confidence 22 999999999999999999999999
Q ss_pred eCCCCCcCHHHHHHHHHHHHHHH
Q psy1503 238 DDPLSAVDMHVGKHLFEDCISGC 260 (265)
Q Consensus 238 DEp~s~LD~~~~~~i~~~~i~~~ 260 (265)
||||++||..+...+.+ .+..+
T Consensus 105 DEp~~~lD~~~~~~l~~-~l~~~ 126 (157)
T cd00267 105 DEPTSGLDPASRERLLE-LLREL 126 (157)
T ss_pred eCCCcCCCHHHHHHHHH-HHHHH
Confidence 99999999999887755 44433
No 350
>PRK13409 putative ATPase RIL; Provisional
Probab=99.97 E-value=8.1e-31 Score=256.86 Aligned_cols=151 Identities=24% Similarity=0.370 Sum_probs=120.2
Q ss_pred eEEEEeCCCCCCcceeeceEEEcCCcEEEEEcCCCChHHHHHHHHhcCcCCCccEEE-----------EcCe--------
Q psy1503 93 NVTAQWSLQNADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVS-----------LGGT-------- 153 (265)
Q Consensus 93 ~~~~~~~~~~~~~~l~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~-----------~~g~-------- 153 (265)
+++++|+. ...+|++++ .+++|++++|+||||||||||+++|+|+++|++|+|. ++|.
T Consensus 78 ~~~~~yg~--~~~~L~~l~-~i~~Gev~gLvG~NGaGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~~G~~l~~~~~~ 154 (590)
T PRK13409 78 EPVHRYGV--NGFKLYGLP-IPKEGKVTGILGPNGIGKTTAVKILSGELIPNLGDYEEEPSWDEVLKRFRGTELQNYFKK 154 (590)
T ss_pred CceEEecC--CceeEecCC-cCCCCCEEEEECCCCCCHHHHHHHHhCCccCCCccccCCCcHHHHHHHhCChHHHHHHHH
Confidence 47899964 246899999 8999999999999999999999999999999999997 6551
Q ss_pred -------EEE----EecCCCCccccHHHHHhcCCcccHHHHHHHHHHhcchhHHhcCCCCCccccCCCCCCCCHHHHHHH
Q psy1503 154 -------VSY----ASQEPWIFAATIRQNILFGLPYLRRRYADVIRVCALQDDFDSLPNGDFTVVGERGASLSGGQKARI 222 (265)
Q Consensus 154 -------i~~----v~Q~~~l~~~ti~eni~~~~~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~vg~~g~~LSgGqrqRi 222 (265)
+++ ++|.|.+|.+|++||+.... ..++..++++..++.... .....+||||||||+
T Consensus 155 ~~~~~~~~~~~~q~~~~~p~~~~~tv~e~l~~~~--~~~~~~~~l~~l~l~~~~-----------~~~~~~LSgGe~qrv 221 (590)
T PRK13409 155 LYNGEIKVVHKPQYVDLIPKVFKGKVRELLKKVD--ERGKLDEVVERLGLENIL-----------DRDISELSGGELQRV 221 (590)
T ss_pred HhccCcceeecccchhhhhhhhcchHHHHHHhhh--HHHHHHHHHHHcCCchhh-----------cCChhhCCHHHHHHH
Confidence 344 44556677789999987521 223445566665554322 234568999999999
Q ss_pred HHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHH
Q psy1503 223 NLARAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGC 260 (265)
Q Consensus 223 alARal~~~~~illLDEp~s~LD~~~~~~i~~~~i~~~ 260 (265)
+|||||+++|++||||||||+||+.....+++ .+..+
T Consensus 222 ~ia~al~~~p~lllLDEPts~LD~~~~~~l~~-~i~~l 258 (590)
T PRK13409 222 AIAAALLRDADFYFFDEPTSYLDIRQRLNVAR-LIREL 258 (590)
T ss_pred HHHHHHhcCCCEEEEECCCCCCCHHHHHHHHH-HHHHH
Confidence 99999999999999999999999999988865 44444
No 351
>PLN03140 ABC transporter G family member; Provisional
Probab=99.97 E-value=3e-30 Score=272.83 Aligned_cols=165 Identities=23% Similarity=0.409 Sum_probs=132.0
Q ss_pred cEEEEeEEEEeCCC----------CCCcceeeceEEEcCCcEEEEEcCCCChHHHHHHHHhcCcCC--CccEEEEcCe--
Q psy1503 88 HVSLDNVTAQWSLQ----------NADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRI--SSGKVSLGGT-- 153 (265)
Q Consensus 88 ~i~~~~~~~~~~~~----------~~~~~l~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~--~~G~i~~~g~-- 153 (265)
.+.++|+++..+.. ....+|+|+|+++++|++++|+||||||||||+++|+|..++ .+|+|.++|.
T Consensus 867 ~~~~~~v~y~v~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gel~aL~G~sGaGKTTLL~~LaG~~~~g~~~G~I~inG~~~ 946 (1470)
T PLN03140 867 AMSFDDVNYFVDMPAEMKEQGVTEDRLQLLREVTGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPK 946 (1470)
T ss_pred eEEEEEEEEEEccCccccccccCcCCceEeeCcEEEEECCeEEEEECCCCCCHHHHHHHHcCCCCCCcccceEEECCccC
Confidence 58899999987532 123689999999999999999999999999999999999763 7899999883
Q ss_pred --------EEEEecCCCCcc-ccHHHHHhcCC----c--ccH----HHHHHHHHHhcchhHHhcCCCCCccccCCCC-CC
Q psy1503 154 --------VSYASQEPWIFA-ATIRQNILFGL----P--YLR----RRYADVIRVCALQDDFDSLPNGDFTVVGERG-AS 213 (265)
Q Consensus 154 --------i~~v~Q~~~l~~-~ti~eni~~~~----~--~~~----~~~~~~~~~~~l~~~i~~l~~g~~t~vg~~g-~~ 213 (265)
+|||+|++.+++ .||+||+.|+. + .+. +.++++++..++.+. .++.+|..+ ..
T Consensus 947 ~~~~~~~~igyv~Q~d~~~~~lTV~E~L~~~a~lr~~~~~~~~~~~~~v~~vl~~lgL~~~-------~~~~vg~~~~~~ 1019 (1470)
T PLN03140 947 KQETFARISGYCEQNDIHSPQVTVRESLIYSAFLRLPKEVSKEEKMMFVDEVMELVELDNL-------KDAIVGLPGVTG 1019 (1470)
T ss_pred ChHHhhhheEEEccccccCCCCcHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHCCChhH-------hCCccCCCCCCC
Confidence 799999988876 59999998742 1 111 123455555555432 245566544 68
Q ss_pred CCHHHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHH
Q psy1503 214 LSGGQKARINLARAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGC 260 (265)
Q Consensus 214 LSgGqrqRialARal~~~~~illLDEp~s~LD~~~~~~i~~~~i~~~ 260 (265)
||||||||++|||+|+.+|+|++|||||||||+.++..+++ .+..+
T Consensus 1020 LSgGerkRvsIa~aL~~~P~lL~LDEPTsgLD~~~a~~v~~-~L~~l 1065 (1470)
T PLN03140 1020 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMR-TVRNT 1065 (1470)
T ss_pred cCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHH-HHHHH
Confidence 99999999999999999999999999999999999998865 44443
No 352
>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.97 E-value=1.2e-30 Score=221.30 Aligned_cols=166 Identities=27% Similarity=0.389 Sum_probs=132.7
Q ss_pred EEEeEEEEeCC--CCCCcceeeceEEEcCCcEEEEEcCCCChHHHHHHHHhcCcCCCccEEEEcCe-------------E
Q psy1503 90 SLDNVTAQWSL--QNADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSLGGT-------------V 154 (265)
Q Consensus 90 ~~~~~~~~~~~--~~~~~~l~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g~-------------i 154 (265)
.+.|+.+.+.+ ...+++|+++|++|++|+++.|+|.||||||||+++|+|.+.|++|+|.++|. +
T Consensus 3 ~~~~~~~~f~~g~~~ek~~l~~~sL~I~~g~FvtViGsNGAGKSTlln~iaG~l~~t~G~I~Idg~dVtk~~~~~RA~~l 82 (263)
T COG1101 3 SLSNATKTFFKGTPLEKRALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKPTSGQILIDGVDVTKKSVAKRANLL 82 (263)
T ss_pred ccccceeeecCCChhHHHHHhcCceeecCCceEEEEcCCCccHHHHHHHhhCccccCCceEEECceecccCCHHHHhhHH
Confidence 44555544432 23467999999999999999999999999999999999999999999999984 8
Q ss_pred EEEecCCC--Ccc-ccHHHHHhcCCcccHHH-HHH---HHHHhcchhHHhcCCCCCccccCCCCCCCCHHHHHHHHHHHH
Q psy1503 155 SYASQEPW--IFA-ATIRQNILFGLPYLRRR-YAD---VIRVCALQDDFDSLPNGDFTVVGERGASLSGGQKARINLARA 227 (265)
Q Consensus 155 ~~v~Q~~~--l~~-~ti~eni~~~~~~~~~~-~~~---~~~~~~l~~~i~~l~~g~~t~vg~~g~~LSgGqrqRialARa 227 (265)
+-|+|+|- .++ .||.||+.+.....+.+ +.. .-+.....+.+..++.|++..++.+..-|||||||-++|+.|
T Consensus 83 arVfQdp~~gt~~~lTieENl~la~~Rg~~rgl~~~ln~~~~~~f~~~l~~l~lgLenrL~~~iglLSGGQRQalsL~MA 162 (263)
T COG1101 83 ARVFQDPLAGTAPELTIEENLALAESRGKKRGLSSALNERRRSSFRERLARLGLGLENRLSDRIGLLSGGQRQALSLLMA 162 (263)
T ss_pred HHHhcchhhCCcccccHHHHHHHHHhcCcccccchhhhHHHHHHHHHHHhhcccchhhhhcChhhhccchHHHHHHHHHH
Confidence 89999996 443 59999998643210000 000 011122334577888899888999999999999999999999
Q ss_pred HccCCCEEEEeCCCCCcCHHHHHHHHHH
Q psy1503 228 VYKNADIYLLDDPLSAVDMHVGKHLFED 255 (265)
Q Consensus 228 l~~~~~illLDEp~s~LD~~~~~~i~~~ 255 (265)
.++.|+|++|||-|++|||.+...|++.
T Consensus 163 tl~~pkiLLLDEHTAALDPkta~~vm~l 190 (263)
T COG1101 163 TLHPPKILLLDEHTAALDPKTAEFVMEL 190 (263)
T ss_pred hcCCCcEEEecchhhcCCcchHHHHHHH
Confidence 9999999999999999999999988764
No 353
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.96 E-value=1.7e-29 Score=212.31 Aligned_cols=118 Identities=25% Similarity=0.440 Sum_probs=93.4
Q ss_pred CcceeeceEEEcCCcEEEEEcCCCChHHHHHHHHhcCcCCCccEEEEcCe--------EEEEecCCCCccccHHHHHhcC
Q psy1503 104 DLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSLGGT--------VSYASQEPWIFAATIRQNILFG 175 (265)
Q Consensus 104 ~~~l~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g~--------i~~v~Q~~~l~~~ti~eni~~~ 175 (265)
.++|+|+||++++|++++|+||||||||||++++++ ++|++.+++. ++|++|
T Consensus 8 ~~~l~~isl~i~~G~~~~l~G~nG~GKSTLl~~il~----~~G~v~~~~~~~~~~~~~~~~~~q---------------- 67 (176)
T cd03238 8 VHNLQNLDVSIPLNVLVVVTGVSGSGKSTLVNEGLY----ASGKARLISFLPKFSRNKLIFIDQ---------------- 67 (176)
T ss_pred eeeecceEEEEcCCCEEEEECCCCCCHHHHHHHHhh----cCCcEEECCcccccccccEEEEhH----------------
Confidence 568999999999999999999999999999999963 6899988764 223322
Q ss_pred CcccHHHHHHHHHHhcchhHHhcCCCCCccccCCCCCCCCHHHHHHHHHHHHHccC--CCEEEEeCCCCCcCHHHHHHHH
Q psy1503 176 LPYLRRRYADVIRVCALQDDFDSLPNGDFTVVGERGASLSGGQKARINLARAVYKN--ADIYLLDDPLSAVDMHVGKHLF 253 (265)
Q Consensus 176 ~~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~vg~~g~~LSgGqrqRialARal~~~--~~illLDEp~s~LD~~~~~~i~ 253 (265)
.++++..++.. . ....+..+||||||||++||||++.+ |+++||||||++||+.+.+.+.
T Consensus 68 --------~~~l~~~~L~~---------~-~~~~~~~~LSgGq~qrl~laral~~~~~p~llLlDEPt~~LD~~~~~~l~ 129 (176)
T cd03238 68 --------LQFLIDVGLGY---------L-TLGQKLSTLSGGELQRVKLASELFSEPPGTLFILDEPSTGLHQQDINQLL 129 (176)
T ss_pred --------HHHHHHcCCCc---------c-ccCCCcCcCCHHHHHHHHHHHHHhhCCCCCEEEEeCCcccCCHHHHHHHH
Confidence 12333333321 1 14456789999999999999999999 9999999999999999998886
Q ss_pred HHHHHHH
Q psy1503 254 EDCISGC 260 (265)
Q Consensus 254 ~~~i~~~ 260 (265)
+ .+..+
T Consensus 130 ~-~l~~~ 135 (176)
T cd03238 130 E-VIKGL 135 (176)
T ss_pred H-HHHHH
Confidence 5 44443
No 354
>KOG0060|consensus
Probab=99.96 E-value=2.1e-28 Score=231.41 Aligned_cols=171 Identities=23% Similarity=0.354 Sum_probs=147.4
Q ss_pred CCCcEEEEeEEEEeCCCCCCcceeeceEEEcCCcEEEEEcCCCChHHHHHHHHhcCcCCCccEEEEc--C---eEEEEec
Q psy1503 85 GKGHVSLDNVTAQWSLQNADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSLG--G---TVSYASQ 159 (265)
Q Consensus 85 ~~~~i~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~--g---~i~~v~Q 159 (265)
.+..|++++|+++-|++ +..+++|+||+|+.|+.+-|+||||||||+|++++.|+.+..+|++... | .+-|+||
T Consensus 430 ~Dn~i~~e~v~l~tPt~-g~~lie~Ls~~V~~g~~LLItG~sG~GKtSLlRvlggLWp~~~G~l~k~~~~~~~~lfflPQ 508 (659)
T KOG0060|consen 430 ADNAIEFEEVSLSTPTN-GDLLIENLSLEVPSGQNLLITGPSGCGKTSLLRVLGGLWPSTGGKLTKPTDGGPKDLFFLPQ 508 (659)
T ss_pred ccceEEeeeeeecCCCC-CceeeeeeeeEecCCCeEEEECCCCCchhHHHHHHhcccccCCCeEEecccCCCCceEEecC
Confidence 34689999999998764 5567788999999999999999999999999999999999999999764 3 2899999
Q ss_pred CCCCccccHHHHHhcCCc--------ccHHHHHHHHHHhcchhHHhcCCCCCcccc-CCCCCCCCHHHHHHHHHHHHHcc
Q psy1503 160 EPWIFAATIRQNILFGLP--------YLRRRYADVIRVCALQDDFDSLPNGDFTVV-GERGASLSGGQKARINLARAVYK 230 (265)
Q Consensus 160 ~~~l~~~ti~eni~~~~~--------~~~~~~~~~~~~~~l~~~i~~l~~g~~t~v-g~~g~~LSgGqrqRialARal~~ 230 (265)
.|+.-.||+||-+.|... .+++++.+.++.+++.+.+++.. |+++.+ -+=...||+||+||+|+||.+|+
T Consensus 509 rPYmt~GTLRdQvIYP~~~~~~~~~~~~d~~i~r~Le~v~L~hl~~r~g-gld~~~~~dW~dvLS~GEqQRLa~ARLfy~ 587 (659)
T KOG0060|consen 509 RPYMTLGTLRDQVIYPLKAEDMDSKSASDEDILRILENVQLGHLLEREG-GLDQQVDWDWMDVLSPGEQQRLAFARLFYH 587 (659)
T ss_pred CCCccccchhheeeccCccccccccCCCHHHHHHHHHHhhhhhHHHHhC-CCCchhhccHHhhcCHHHHHHHHHHHHHhc
Confidence 999888999999998732 24677888899999988777654 555433 35567899999999999999999
Q ss_pred CCCEEEEeCCCCCcCHHHHHHHHHHHH
Q psy1503 231 NADIYLLDDPLSAVDMHVGKHLFEDCI 257 (265)
Q Consensus 231 ~~~illLDEp~s~LD~~~~~~i~~~~i 257 (265)
+|++-||||.|||||.+.|..+++.|=
T Consensus 588 kPk~AiLDE~TSAv~~dvE~~~Yr~~r 614 (659)
T KOG0060|consen 588 KPKFAILDECTSAVTEDVEGALYRKCR 614 (659)
T ss_pred CCceEEeechhhhccHHHHHHHHHHHH
Confidence 999999999999999999999998763
No 355
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=6.1e-30 Score=212.93 Aligned_cols=154 Identities=27% Similarity=0.376 Sum_probs=125.0
Q ss_pred EEEEeEEEEeCCCCCCcceeeceEEEcCCcEEEEEcCCCChHHHHHHHHhcCcCCCccEEEEcCe------------EEE
Q psy1503 89 VSLDNVTAQWSLQNADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSLGGT------------VSY 156 (265)
Q Consensus 89 i~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g~------------i~~ 156 (265)
++.+|++..-+ ...++.++||++.+||.+-|.||||||||||+++|+|+++|++|+|.++|. +-|
T Consensus 3 L~a~~L~~~R~---e~~lf~~L~f~l~~Ge~~~i~G~NG~GKTtLLRilaGLl~p~~G~v~~~~~~i~~~~~~~~~~l~y 79 (209)
T COG4133 3 LEAENLSCERG---ERTLFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLRPDAGEVYWQGEPIQNVRESYHQALLY 79 (209)
T ss_pred chhhhhhhccC---cceeecceeEEEcCCCEEEEECCCCCcHHHHHHHHHcccCCCCCeEEecCCCCccchhhHHHHHHH
Confidence 45667776543 457899999999999999999999999999999999999999999999863 345
Q ss_pred EecCCCCcc-ccHHHHHhcCCc----ccHHHHHHHHHHhcchhHHhcCCCCCccccCCCCCCCCHHHHHHHHHHHHHccC
Q psy1503 157 ASQEPWIFA-ATIRQNILFGLP----YLRRRYADVIRVCALQDDFDSLPNGDFTVVGERGASLSGGQKARINLARAVYKN 231 (265)
Q Consensus 157 v~Q~~~l~~-~ti~eni~~~~~----~~~~~~~~~~~~~~l~~~i~~l~~g~~t~vg~~g~~LSgGqrqRialARal~~~ 231 (265)
+-..+-+=+ .|+.||+.|-.. .+.+.++++++.++|... ..+| ..+||.|||.||||||-.++.
T Consensus 80 LGH~~giK~eLTa~ENL~F~~~~~~~~~~~~i~~Al~~vgL~g~-~dlp----------~~~LSAGQqRRvAlArL~ls~ 148 (209)
T COG4133 80 LGHQPGIKTELTALENLHFWQRFHGSGNAATIWEALAQVGLAGL-EDLP----------VGQLSAGQQRRVALARLWLSP 148 (209)
T ss_pred hhccccccchhhHHHHHHHHHHHhCCCchhhHHHHHHHcCcccc-cccc----------hhhcchhHHHHHHHHHHHcCC
Confidence 555555543 599999998533 235677888888888653 3334 358999999999999999999
Q ss_pred CCEEEEeCCCCCcCHHHHHHHHHHHH
Q psy1503 232 ADIYLLDDPLSAVDMHVGKHLFEDCI 257 (265)
Q Consensus 232 ~~illLDEp~s~LD~~~~~~i~~~~i 257 (265)
+++.|||||+++||.+....+ ...+
T Consensus 149 ~pLWiLDEP~taLDk~g~a~l-~~l~ 173 (209)
T COG4133 149 APLWILDEPFTALDKEGVALL-TALM 173 (209)
T ss_pred CCceeecCcccccCHHHHHHH-HHHH
Confidence 999999999999999987654 4444
No 356
>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.96 E-value=1.1e-29 Score=211.03 Aligned_cols=158 Identities=25% Similarity=0.394 Sum_probs=121.4
Q ss_pred cEEEEeEEEEeCCC------CCCcceeeceEEEcCCcEEEEEcCCCChHHHHHHHHhcCcCCCccEEEEcCe--------
Q psy1503 88 HVSLDNVTAQWSLQ------NADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSLGGT-------- 153 (265)
Q Consensus 88 ~i~~~~~~~~~~~~------~~~~~l~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g~-------- 153 (265)
.++++|+++.|... +...+++.|||++++|+.+||+|.||||||||.++|.|.++|++|+|.+||+
T Consensus 4 LLeV~nLsKtF~~~~~lf~r~~~~AV~~vSFtL~~~QTlaiIG~NGSGKSTLakMlaGmi~PTsG~il~n~~~L~~~Dy~ 83 (267)
T COG4167 4 LLEVRNLSKTFRYRTGLFRRQTVEAVKPVSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGEILINDHPLHFGDYS 83 (267)
T ss_pred hhhhhhhhhhhhhhhhhhhhhhhhcccceEEEecCCcEEEEEccCCCcHhHHHHHHhcccCCCCceEEECCccccccchH
Confidence 46777887666421 1234789999999999999999999999999999999999999999999984
Q ss_pred -----EEEEecCCC-CccccHHHHHh----cCC----cc----cHHHHHHHHHHhcchhHHhcCCCCCccccCCCCCCCC
Q psy1503 154 -----VSYASQEPW-IFAATIRQNIL----FGL----PY----LRRRYADVIRVCALQDDFDSLPNGDFTVVGERGASLS 215 (265)
Q Consensus 154 -----i~~v~Q~~~-l~~~ti~eni~----~~~----~~----~~~~~~~~~~~~~l~~~i~~l~~g~~t~vg~~g~~LS 215 (265)
|-+++|+|. -|+ -|-||- ... .. ..+++.+.++.++|.++-..+ ....||
T Consensus 84 ~R~k~IRMiFQDpnts~N--PRl~iGqiLd~PL~l~T~~~~~~R~~~i~~TL~~VGL~Pdhan~----------~~~~la 151 (267)
T COG4167 84 FRSKRIRMIFQDPNTSLN--PRLRIGQILDFPLRLNTDLEPEQRRKQIFETLRMVGLLPDHANY----------YPHMLA 151 (267)
T ss_pred hhhhheeeeecCCccccC--hhhhhhhHhcchhhhcccCChHHHHHHHHHHHHHhccCcccccc----------chhhcC
Confidence 899999986 222 222321 111 11 123445556666665544322 346899
Q ss_pred HHHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHH
Q psy1503 216 GGQKARINLARAVYKNADIYLLDDPLSAVDMHVGKHLFEDCI 257 (265)
Q Consensus 216 gGqrqRialARal~~~~~illLDEp~s~LD~~~~~~i~~~~i 257 (265)
.||||||||||||+-+|+|+|.||+.++||...+.++.+-.+
T Consensus 152 ~~QKQRVaLARALIL~P~iIIaDeAl~~LD~smrsQl~NL~L 193 (267)
T COG4167 152 PGQKQRVALARALILRPKIIIADEALASLDMSMRSQLINLML 193 (267)
T ss_pred chhHHHHHHHHHHhcCCcEEEehhhhhhccHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999876433
No 357
>KOG0061|consensus
Probab=99.96 E-value=1.2e-28 Score=242.20 Aligned_cols=166 Identities=28% Similarity=0.433 Sum_probs=135.2
Q ss_pred CcEEEEeEEEEeCCCC--CCcceeeceEEEcCCcEEEEEcCCCChHHHHHHHHhcCcCC---CccEEEEcCe--------
Q psy1503 87 GHVSLDNVTAQWSLQN--ADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRI---SSGKVSLGGT-------- 153 (265)
Q Consensus 87 ~~i~~~~~~~~~~~~~--~~~~l~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~---~~G~i~~~g~-------- 153 (265)
..+.+++++..-+.+. .+.+|++||.++++||++||.||+|||||||+++|+|.... .+|+|.+||+
T Consensus 24 ~~~~~~~~~~~~~~~~~~~k~iL~~vsg~~~~Gel~AimG~SGsGKtTLL~~Lagr~~~~~~~~G~ilvNG~~~~~~~~~ 103 (613)
T KOG0061|consen 24 VKLSFRNLTLSSKEKSKKTKTILKGVSGTAKPGELLAIMGPSGSGKTTLLNALAGRLNGGLKLSGEILLNGRPRDSRSFR 103 (613)
T ss_pred ceeEEEEEEEEecCCCCccceeeeCcEEEEecCeEEEEECCCCCCHHHHHHHHhccccCCCcceEEEEECCccCchhhhh
Confidence 3578888887775431 36799999999999999999999999999999999999974 7999999993
Q ss_pred --EEEEecCCCCcc-ccHHHHHhcCCc----c------cHHHHHHHHHHhcchhHHhcCCCCCccccCC-CCCCCCHHHH
Q psy1503 154 --VSYASQEPWIFA-ATIRQNILFGLP----Y------LRRRYADVIRVCALQDDFDSLPNGDFTVVGE-RGASLSGGQK 219 (265)
Q Consensus 154 --i~~v~Q~~~l~~-~ti~eni~~~~~----~------~~~~~~~~~~~~~l~~~i~~l~~g~~t~vg~-~g~~LSgGqr 219 (265)
.|||.|+..+++ .||+|++.|... . .+++++++++..+|.+ . -+|.+|. ....+|||||
T Consensus 104 ~~s~yV~QdD~l~~~LTV~EtL~f~A~lrlp~~~~~~~k~~~V~~vi~~LgL~~-~------~~t~ig~~~~rgiSGGEr 176 (613)
T KOG0061|consen 104 KISGYVQQDDVLLPTLTVRETLRFSALLRLPSSLSKEEKRERVEEVISELGLEK-C------ADTLIGNPGIRGLSGGER 176 (613)
T ss_pred heeEEEcccccccccccHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCChh-h------ccceecCCCCCccccchh
Confidence 899999999997 599999987531 1 1345556666655542 2 3466763 3368999999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHH
Q psy1503 220 ARINLARAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGC 260 (265)
Q Consensus 220 qRialARal~~~~~illLDEp~s~LD~~~~~~i~~~~i~~~ 260 (265)
+|+++|.-++.||.|++|||||||||+.++.++.+ .+.++
T Consensus 177 kRvsia~Ell~~P~iLflDEPTSGLDS~sA~~vv~-~Lk~l 216 (613)
T KOG0061|consen 177 KRVSIALELLTDPSILFLDEPTSGLDSFSALQVVQ-LLKRL 216 (613)
T ss_pred hHHHHHHHHHcCCCEEEecCCCCCcchhhHHHHHH-HHHHH
Confidence 99999999999999999999999999999998866 33443
No 358
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.96 E-value=1.9e-28 Score=236.00 Aligned_cols=159 Identities=26% Similarity=0.395 Sum_probs=130.9
Q ss_pred CCcEEEEeEEEEeCCCCCCcceeeceEEEcCCcEEEEEcCCCChHHHHHHHHhcCcCCCccEEEEcC--eEEEEecCC-C
Q psy1503 86 KGHVSLDNVTAQWSLQNADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSLGG--TVSYASQEP-W 162 (265)
Q Consensus 86 ~~~i~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g--~i~~v~Q~~-~ 162 (265)
...++++|++++|+.. +++++++||.|.+|+.+||+||||+|||||+++|+|...|.+|+|.+.. ++||.+|+. .
T Consensus 319 ~~vl~~~~~~~~y~~~--~~l~~~~s~~i~~g~riaiiG~NG~GKSTLlk~l~g~~~~~~G~v~~g~~v~igyf~Q~~~~ 396 (530)
T COG0488 319 KLVLEFENVSKGYDGG--RLLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELGPLSGTVKVGETVKIGYFDQHRDE 396 (530)
T ss_pred CeeEEEeccccccCCC--ceeecCceEEecCCCEEEEECCCCCCHHHHHHHHhhhcccCCceEEeCCceEEEEEEehhhh
Confidence 4578999999999643 6799999999999999999999999999999999999999999998875 499999987 3
Q ss_pred Ccc-ccHHHHHhcCCcc-cHHHHHHHHHHhcchhHHhcCCCCCccccCCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCC
Q psy1503 163 IFA-ATIRQNILFGLPY-LRRRYADVIRVCALQDDFDSLPNGDFTVVGERGASLSGGQKARINLARAVYKNADIYLLDDP 240 (265)
Q Consensus 163 l~~-~ti~eni~~~~~~-~~~~~~~~~~~~~l~~~i~~l~~g~~t~vg~~g~~LSgGqrqRialARal~~~~~illLDEp 240 (265)
+++ .|+.|++.-..+. .+..+...+...++..+-. ......||||||-|+.||+.++.+|.+||||||
T Consensus 397 l~~~~t~~d~l~~~~~~~~e~~~r~~L~~f~F~~~~~----------~~~v~~LSGGEk~Rl~La~ll~~~pNvLiLDEP 466 (530)
T COG0488 397 LDPDKTVLEELSEGFPDGDEQEVRAYLGRFGFTGEDQ----------EKPVGVLSGGEKARLLLAKLLLQPPNLLLLDEP 466 (530)
T ss_pred cCccCcHHHHHHhhCccccHHHHHHHHHHcCCChHHH----------hCchhhcCHhHHHHHHHHHHhccCCCEEEEcCC
Confidence 343 4999998755432 2455566666655543322 244568999999999999999999999999999
Q ss_pred CCCcCHHHHHHHHHHHH
Q psy1503 241 LSAVDMHVGKHLFEDCI 257 (265)
Q Consensus 241 ~s~LD~~~~~~i~~~~i 257 (265)
|++||..+...+ ++++
T Consensus 467 TNhLDi~s~~aL-e~aL 482 (530)
T COG0488 467 TNHLDIESLEAL-EEAL 482 (530)
T ss_pred CccCCHHHHHHH-HHHH
Confidence 999999998776 4454
No 359
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=99.96 E-value=7.7e-29 Score=262.22 Aligned_cols=150 Identities=22% Similarity=0.320 Sum_probs=120.4
Q ss_pred CcceeeceEEEcCCcEEEEEcCCCChHHHHHHHHhcCc----CCCccEEEEcCe------------EEEEecCCCCcc-c
Q psy1503 104 DLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNEL----RISSGKVSLGGT------------VSYASQEPWIFA-A 166 (265)
Q Consensus 104 ~~~l~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~g~~----~~~~G~i~~~g~------------i~~v~Q~~~l~~-~ 166 (265)
+.+|+|+|+++++|++++|+||||||||||+++|+|.. .|.+|+|.++|. ++|++|++.+++ .
T Consensus 74 ~~iL~~vs~~i~~Ge~~aIlG~nGsGKSTLLk~LaG~~~~~~~~~~G~I~~~G~~~~~~~~~~r~~i~yv~Q~d~~~~~l 153 (1394)
T TIGR00956 74 FDILKPMDGLIKPGELTVVLGRPGSGCSTLLKTIASNTDGFHIGVEGVITYDGITPEEIKKHYRGDVVYNAETDVHFPHL 153 (1394)
T ss_pred ceeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCCCceeEEEECCEehHHHHhhcCceeEEeccccccCCCC
Confidence 45899999999999999999999999999999999986 579999999883 899999998886 5
Q ss_pred cHHHHHhcCCc----------ccHHHH-----HHHHHHhcchhHHhcCCCCCccccCC-CCCCCCHHHHHHHHHHHHHcc
Q psy1503 167 TIRQNILFGLP----------YLRRRY-----ADVIRVCALQDDFDSLPNGDFTVVGE-RGASLSGGQKARINLARAVYK 230 (265)
Q Consensus 167 ti~eni~~~~~----------~~~~~~-----~~~~~~~~l~~~i~~l~~g~~t~vg~-~g~~LSgGqrqRialARal~~ 230 (265)
||+||+.|+.. ...++. +.+++..++ .+-.+|.+|+ ....|||||||||+|||||+.
T Consensus 154 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL-------~~~~~t~vg~~~~~~LSGGerkRvsIA~aL~~ 226 (1394)
T TIGR00956 154 TVGETLDFAARCKTPQNRPDGVSREEYAKHIADVYMATYGL-------SHTRNTKVGNDFVRGVSGGERKRVSIAEASLG 226 (1394)
T ss_pred CHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHHHHcCc-------ccccCceeCCCcCCCCCcccchHHHHHHHHHh
Confidence 99999987521 111111 112233333 2334566764 467899999999999999999
Q ss_pred CCCEEEEeCCCCCcCHHHHHHHHHHHHHHHh
Q psy1503 231 NADIYLLDDPLSAVDMHVGKHLFEDCISGCL 261 (265)
Q Consensus 231 ~~~illLDEp~s~LD~~~~~~i~~~~i~~~l 261 (265)
+|+|++|||||++||+.++..+.+ .+..+-
T Consensus 227 ~p~vlllDEPTsgLD~~~~~~i~~-~L~~la 256 (1394)
T TIGR00956 227 GAKIQCWDNATRGLDSATALEFIR-ALKTSA 256 (1394)
T ss_pred CCCEEEEeCCCCCcCHHHHHHHHH-HHHHHH
Confidence 999999999999999999999865 555543
No 360
>PLN03140 ABC transporter G family member; Provisional
Probab=99.95 E-value=1.7e-28 Score=259.61 Aligned_cols=156 Identities=22% Similarity=0.342 Sum_probs=121.5
Q ss_pred CcceeeceEEEcCCcEEEEEcCCCChHHHHHHHHhcCcCCC---ccEEEEcCe----------EEEEecCCCCcc-ccHH
Q psy1503 104 DLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRIS---SGKVSLGGT----------VSYASQEPWIFA-ATIR 169 (265)
Q Consensus 104 ~~~l~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~---~G~i~~~g~----------i~~v~Q~~~l~~-~ti~ 169 (265)
..+|+|+|+.|++|++++|+||||||||||+++|+|.++|+ +|+|.++|. ++|++|++.+++ .||+
T Consensus 178 ~~IL~~vs~~i~~Ge~~~llGpnGSGKSTLLk~LaG~l~~~~~~~G~I~~nG~~~~~~~~~~~i~yv~Q~d~~~~~lTV~ 257 (1470)
T PLN03140 178 LTILKDASGIIKPSRMTLLLGPPSSGKTTLLLALAGKLDPSLKVSGEITYNGYRLNEFVPRKTSAYISQNDVHVGVMTVK 257 (1470)
T ss_pred ceeccCCeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEechhhcccceeEEecccccCCCcCcHH
Confidence 45899999999999999999999999999999999999998 999999883 899999988886 5999
Q ss_pred HHHhcCCcc-------------c-HH---------HHHHHHHHhc---------chhHHhc--CCCCCccccCC-CCCCC
Q psy1503 170 QNILFGLPY-------------L-RR---------RYADVIRVCA---------LQDDFDS--LPNGDFTVVGE-RGASL 214 (265)
Q Consensus 170 eni~~~~~~-------------~-~~---------~~~~~~~~~~---------l~~~i~~--l~~g~~t~vg~-~g~~L 214 (265)
||+.|+... . .+ +++..++++. .+..++. +.+-.+|.+|+ ....|
T Consensus 258 EtL~f~a~~~~~~~~~~~~~~~~~~ek~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~L~~lGL~~~~~t~vg~~~~rgl 337 (1470)
T PLN03140 258 ETLDFSARCQGVGTRYDLLSELARREKDAGIFPEAEVDLFMKATAMEGVKSSLITDYTLKILGLDICKDTIVGDEMIRGI 337 (1470)
T ss_pred HHHHHHHHhcCCCCcccchhhcCHHHHhccCCCchhhHHHHHHhhhhcchhhHHHHHHHHHcCCccccCceeCCccccCC
Confidence 999875210 0 00 0000111110 1122222 33345677875 45789
Q ss_pred CHHHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHH
Q psy1503 215 SGGQKARINLARAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGC 260 (265)
Q Consensus 215 SgGqrqRialARal~~~~~illLDEp~s~LD~~~~~~i~~~~i~~~ 260 (265)
||||||||+|||+|+.+|++++|||||+|||+.+..++.+ ++..+
T Consensus 338 SGGerkRVsia~aL~~~p~vlllDEPTsGLDs~t~~~i~~-~Lr~l 382 (1470)
T PLN03140 338 SGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTYQIVK-CLQQI 382 (1470)
T ss_pred CcccceeeeehhhhcCCCcEEEEeCCCcCccHHHHHHHHH-HHHHH
Confidence 9999999999999999999999999999999999999864 55554
No 361
>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.95 E-value=1.3e-28 Score=202.30 Aligned_cols=157 Identities=25% Similarity=0.394 Sum_probs=117.1
Q ss_pred cEEEEeEEEEeCC----CCCCcceeeceEEEcCCcEEEEEcCCCChHHHHHHHHhcCcCCCccEEEEcC-----------
Q psy1503 88 HVSLDNVTAQWSL----QNADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSLGG----------- 152 (265)
Q Consensus 88 ~i~~~~~~~~~~~----~~~~~~l~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g----------- 152 (265)
.+.++|++++|.- .-.-++++++||+++.||++++-||||+|||||+++|.+-|.|++|+|.+.-
T Consensus 4 ~l~v~~~~KtFtlH~q~Gi~LpV~~~vslsV~aGECvvL~G~SG~GKStllr~LYaNY~~d~G~I~v~H~g~~vdl~~a~ 83 (235)
T COG4778 4 PLNVSNVSKTFTLHQQGGVRLPVLRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYANYLPDEGQILVRHEGEWVDLVTAE 83 (235)
T ss_pred eeeeecchhheEeeecCCEEeeeeeceeEEecCccEEEeeCCCCCcHHHHHHHHHhccCCCCceEEEEeCcchhhhhccC
Confidence 4778888877731 1124789999999999999999999999999999999999999999998852
Q ss_pred ----------eEEEEecCCCCccc-cHHHHHh-----cCCccc--HHHHHHHHHHhcchhHHhcCCCCCccccCCCCCCC
Q psy1503 153 ----------TVSYASQEPWIFAA-TIRQNIL-----FGLPYL--RRRYADVIRVCALQDDFDSLPNGDFTVVGERGASL 214 (265)
Q Consensus 153 ----------~i~~v~Q~~~l~~~-ti~eni~-----~~~~~~--~~~~~~~~~~~~l~~~i~~l~~g~~t~vg~~g~~L 214 (265)
.||||+|--...+. +..|.+. .|.+.+ ..+....+...++-+.+=.|+ +.++
T Consensus 84 pr~vl~vRr~TiGyVSQFLRviPRV~aLdVvaePll~~gv~~~~a~~~a~~Ll~rLnlperLW~La----------PaTF 153 (235)
T COG4778 84 PREVLEVRRTTIGYVSQFLRVIPRVSALDVVAEPLLARGVPREVARAKAADLLTRLNLPERLWSLA----------PATF 153 (235)
T ss_pred hHHHHHHHHhhhHHHHHHHHhccCcchHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCCHHHhcCC----------Cccc
Confidence 18999996544442 2223222 232221 122233334444444444443 4689
Q ss_pred CHHHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHH
Q psy1503 215 SGGQKARINLARAVYKNADIYLLDDPLSAVDMHVGKHLFE 254 (265)
Q Consensus 215 SgGqrqRialARal~~~~~illLDEp~s~LD~~~~~~i~~ 254 (265)
|||++||+.|||+++.|-+|++|||||++||+..+..+.+
T Consensus 154 SGGEqQRVNIaRgfivd~pILLLDEPTasLDa~Nr~vVve 193 (235)
T COG4778 154 SGGEQQRVNIARGFIVDYPILLLDEPTASLDATNRAVVVE 193 (235)
T ss_pred CCchheehhhhhhhhccCceEEecCCcccccccchHHHHH
Confidence 9999999999999999999999999999999998877755
No 362
>COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only]
Probab=99.95 E-value=2.9e-28 Score=204.13 Aligned_cols=149 Identities=30% Similarity=0.472 Sum_probs=123.5
Q ss_pred CcEEEEeEEEEeCCCCCCcceeeceEEEcCCcEEEEEcCCCChHHHHHHHHhcCcCCCccEEEEcCe-------------
Q psy1503 87 GHVSLDNVTAQWSLQNADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSLGGT------------- 153 (265)
Q Consensus 87 ~~i~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g~------------- 153 (265)
..++++|++.+|++ -.+|+++||++.+||+-+|+||||+||||++..|.|-.+|+.|++.++|.
T Consensus 4 ~iL~~~~vsVsF~G---F~Aln~ls~~v~~Gelr~lIGpNGAGKTT~mD~ItGKtrp~~G~v~f~g~~dl~~~~e~~IAr 80 (249)
T COG4674 4 IILYLDGVSVSFGG---FKALNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTRPQEGEVLFDGDTDLTKLPEHRIAR 80 (249)
T ss_pred ceEEEeceEEEEcc---eeeeeeeEEEecCCeEEEEECCCCCCceeeeeeecccCCCCcceEEEcCchhhccCCHHHHHH
Confidence 35899999999974 45899999999999999999999999999999999999999999999992
Q ss_pred --EEEEecCCCCcc-ccHHHHHhcCCccc---------------HHHHHHHHHHhcchhHHhcCCCCCccccCCCCCCCC
Q psy1503 154 --VSYASQEPWIFA-ATIRQNILFGLPYL---------------RRRYADVIRVCALQDDFDSLPNGDFTVVGERGASLS 215 (265)
Q Consensus 154 --i~~v~Q~~~l~~-~ti~eni~~~~~~~---------------~~~~~~~~~~~~l~~~i~~l~~g~~t~vg~~g~~LS 215 (265)
||.-+|.|..|. .||+||+.+....+ ..++++++...+|.+. .......||
T Consensus 81 ~GIGRKFQ~PtVfe~ltV~eNLelA~~~~k~v~a~L~~r~~~~e~~ride~La~igL~~~-----------~~~~A~~LS 149 (249)
T COG4674 81 AGIGRKFQKPTVFENLTVRENLELALNRDKSVFASLFARLRAEERRRIDELLATIGLGDE-----------RDRLAALLS 149 (249)
T ss_pred hccCccccCCeehhhccHHHHHHHHhcCCcchHHHhhhhcChhHHHHHHHHHHHcccchh-----------hhhhhhhhc
Confidence 899999999996 59999998653221 2244444444444332 223456899
Q ss_pred HHHHHHHHHHHHHccCCCEEEEeCCCCCc-CHHHH
Q psy1503 216 GGQKARINLARAVYKNADIYLLDDPLSAV-DMHVG 249 (265)
Q Consensus 216 gGqrqRialARal~~~~~illLDEp~s~L-D~~~~ 249 (265)
-||||++.|+..++++|++++||||++++ |.+++
T Consensus 150 HGqKQwLEIGMll~Q~P~lLLlDEPvAGMTd~Et~ 184 (249)
T COG4674 150 HGQKQWLEIGMLLAQDPKLLLLDEPVAGMTDAETE 184 (249)
T ss_pred cchhhhhhhheeeccCCcEEEecCccCCCcHHHHH
Confidence 99999999999999999999999999999 55544
No 363
>PLN03073 ABC transporter F family; Provisional
Probab=99.95 E-value=2.6e-27 Score=236.37 Aligned_cols=157 Identities=22% Similarity=0.224 Sum_probs=108.1
Q ss_pred CcEEEEeEEEEeCCCCCCcceeeceEEEcCCcEEEEEcCCCChHHHHHHHHhcCc---CCCccEEEEcCeEEEEecCCCC
Q psy1503 87 GHVSLDNVTAQWSLQNADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNEL---RISSGKVSLGGTVSYASQEPWI 163 (265)
Q Consensus 87 ~~i~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~g~~---~~~~G~i~~~g~i~~v~Q~~~l 163 (265)
..|+++|++|+|+. .++|+|+||+|++|++++||||||||||||+++|+|.. .|.+ |.|+|++|++..
T Consensus 176 ~~I~i~nls~~y~~---~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLLr~l~g~~~~g~p~~------g~I~~~~Q~~~g 246 (718)
T PLN03073 176 KDIHMENFSISVGG---RDLIVDASVTLAFGRHYGLVGRNGTGKTTFLRYMAMHAIDGIPKN------CQILHVEQEVVG 246 (718)
T ss_pred eeEEEceEEEEeCC---CEEEECCEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCCC------CEEEEEeccCCC
Confidence 46999999999963 45999999999999999999999999999999999964 2343 456788887543
Q ss_pred ccccHHHHHhcCC-------------------------------------ccc--HHHHHHHHHHhcc----------hh
Q psy1503 164 FAATIRQNILFGL-------------------------------------PYL--RRRYADVIRVCAL----------QD 194 (265)
Q Consensus 164 ~~~ti~eni~~~~-------------------------------------~~~--~~~~~~~~~~~~l----------~~ 194 (265)
...|+.+.+.-.. +.+ .+++.++.+..++ ..
T Consensus 247 ~~~t~~~~v~~~~~~~~~~~~~~~~~~~q~~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~r~~~ 326 (718)
T PLN03073 247 DDTTALQCVLNTDIERTQLLEEEAQLVAQQRELEFETETGKGKGANKDGVDKDAVSQRLEEIYKRLELIDAYTAEARAAS 326 (718)
T ss_pred CCCCHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhcccccccccccccccchHHHHHHHHHHHHHHHhcCcchHHHHHHH
Confidence 2334433321100 000 0112222221111 01
Q ss_pred HHhcCCCCCc-cccCCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHH
Q psy1503 195 DFDSLPNGDF-TVVGERGASLSGGQKARINLARAVYKNADIYLLDDPLSAVDMHVGKHLFE 254 (265)
Q Consensus 195 ~i~~l~~g~~-t~vg~~g~~LSgGqrqRialARal~~~~~illLDEp~s~LD~~~~~~i~~ 254 (265)
.+..+ |.. ........+||||||||++|||||+.+|+++||||||++||+.+...+.+
T Consensus 327 ~L~~l--gl~~~~~~~~~~~LSgG~k~rv~LA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~ 385 (718)
T PLN03073 327 ILAGL--SFTPEMQVKATKTFSGGWRMRIALARALFIEPDLLLLDEPTNHLDLHAVLWLET 385 (718)
T ss_pred HHHHC--CCChHHHhCchhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHH
Confidence 11111 111 11234457899999999999999999999999999999999999988755
No 364
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=99.95 E-value=3.2e-27 Score=204.15 Aligned_cols=137 Identities=30% Similarity=0.369 Sum_probs=117.4
Q ss_pred CcceeeceEEEcCCcEEEEEcCCCChHHHHHHHHhcCcCCCccEEEEcCeEEEEecCCCCcc--ccHHHHHhc-----CC
Q psy1503 104 DLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSLGGTVSYASQEPWIFA--ATIRQNILF-----GL 176 (265)
Q Consensus 104 ~~~l~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g~i~~v~Q~~~l~~--~ti~eni~~-----~~ 176 (265)
.++|+||||++++||.++|+|+||||||||+++|+|.++|++|+|.++|+++++..-..=|+ .|-||||.+ |.
T Consensus 40 ~~aL~disf~i~~Ge~vGiiG~NGaGKSTLlkliaGi~~Pt~G~v~v~G~v~~li~lg~Gf~pelTGreNi~l~~~~~G~ 119 (249)
T COG1134 40 FWALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYKPTSGKVKVTGKVAPLIELGAGFDPELTGRENIYLRGLILGL 119 (249)
T ss_pred EEEecCceEEEeCCCEEEEECCCCCcHHHHHHHHhCccCCCCceEEEcceEehhhhcccCCCcccchHHHHHHHHHHhCc
Confidence 46899999999999999999999999999999999999999999999999887766555453 499999975 32
Q ss_pred c--ccHHHHHHHHHHhcchhHHhcCCCCCccccCCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHH
Q psy1503 177 P--YLRRRYADVIRVCALQDDFDSLPNGDFTVVGERGASLSGGQKARINLARAVYKNADIYLLDDPLSAVDMHVGKH 251 (265)
Q Consensus 177 ~--~~~~~~~~~~~~~~l~~~i~~l~~g~~t~vg~~g~~LSgGqrqRialARal~~~~~illLDEp~s~LD~~~~~~ 251 (265)
. ..++.++++++.+.|.++++. +..++|.|++.|+++|-|...+|||||+||.++..|+.=.++
T Consensus 120 ~~~ei~~~~~eIieFaELG~fi~~-----------PvktYSSGM~aRLaFsia~~~~pdILllDEvlavGD~~F~~K 185 (249)
T COG1134 120 TRKEIDEKVDEIIEFAELGDFIDQ-----------PVKTYSSGMYARLAFSVATHVEPDILLLDEVLAVGDAAFQEK 185 (249)
T ss_pred cHHHHHHHHHHHHHHHHHHHHhhC-----------chhhccHHHHHHHHHhhhhhcCCCEEEEehhhhcCCHHHHHH
Confidence 2 235677888888888877653 357899999999999999999999999999999999976544
No 365
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=99.95 E-value=3.3e-27 Score=215.82 Aligned_cols=160 Identities=21% Similarity=0.374 Sum_probs=124.5
Q ss_pred CcEEEEeEEEEeCCC-CCCcceeeceEEEcCCcEEEEEcCCCChHHHHHHHHhcCcCC-----CccEEEEcCe-------
Q psy1503 87 GHVSLDNVTAQWSLQ-NADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRI-----SSGKVSLGGT------- 153 (265)
Q Consensus 87 ~~i~~~~~~~~~~~~-~~~~~l~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~-----~~G~i~~~g~------- 153 (265)
..+.++|++..|... ....++++|||+|++||.+|+||.||||||-..+.++|+++. -+|+|.++|.
T Consensus 5 ~lL~v~nLsV~f~~~~~~~~aVk~isf~i~~GEtlAlVGESGSGKSvTa~sim~LLp~~~~~~~sg~i~f~G~dll~~se 84 (534)
T COG4172 5 PLLSIRNLSVAFHQEGGTVEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAAHPSGSILFDGEDLLAASE 84 (534)
T ss_pred cceeeeccEEEEecCCcceEeeccceeeecCCCEEEEEecCCCCccHHHHHHHHhcCCCcccCccceeEEcChhhhcCCH
Confidence 468999999888533 235689999999999999999999999999999999999865 4689999983
Q ss_pred ----------EEEEecCCC--Cccc-cHHHHH----hcCCcc----cHHHHHHHHHHhcchhHHhcCCCCCccccCCCCC
Q psy1503 154 ----------VSYASQEPW--IFAA-TIRQNI----LFGLPY----LRRRYADVIRVCALQDDFDSLPNGDFTVVGERGA 212 (265)
Q Consensus 154 ----------i~~v~Q~~~--l~~~-ti~eni----~~~~~~----~~~~~~~~~~~~~l~~~i~~l~~g~~t~vg~~g~ 212 (265)
|++++|+|. |-+- ||...| .+.... .+++..+.++.+++.+.=. .+...+.
T Consensus 85 ~~lr~iRG~~I~MIFQEPMtSLNPl~tIg~Qi~E~l~~Hrg~~~~~Ar~r~lelL~~VgI~~p~~--------rl~~yPH 156 (534)
T COG4172 85 RQLRGVRGNKIGMIFQEPMTSLNPLHTIGKQLAEVLRLHRGLSRAAARARALELLELVGIPEPEK--------RLDAYPH 156 (534)
T ss_pred HHHhhhcccceEEEecccccccCcHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCchhh--------hhhhCCc
Confidence 999999996 3342 664443 333222 2334445556666543211 1223456
Q ss_pred CCCHHHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHH
Q psy1503 213 SLSGGQKARINLARAVYKNADIYLLDDPLSAVDMHVGKHLFE 254 (265)
Q Consensus 213 ~LSgGqrqRialARal~~~~~illLDEp~s~LD~~~~~~i~~ 254 (265)
+|||||||||.||.||+.+|+++|.||||.+||..+..+|++
T Consensus 157 eLSGGqRQRVMIAMALan~P~lLIADEPTTALDVtvQaQIL~ 198 (534)
T COG4172 157 ELSGGQRQRVMIAMALANEPDLLIADEPTTALDVTVQAQILD 198 (534)
T ss_pred ccCcchhhHHHHHHHHcCCCCeEeecCCcchhhhhhHHHHHH
Confidence 999999999999999999999999999999999999999976
No 366
>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.94 E-value=6.5e-27 Score=193.13 Aligned_cols=165 Identities=22% Similarity=0.421 Sum_probs=122.6
Q ss_pred CcEEEEeEEEEeCCCCCCcceeeceEEEcCCcEEEEEcCCCChHHHHHHHHhcCcCCCccEEEEcCe-------------
Q psy1503 87 GHVSLDNVTAQWSLQNADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSLGGT------------- 153 (265)
Q Consensus 87 ~~i~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g~------------- 153 (265)
+.++++++++.|+.. ..-+||||++.|||+.+|||.||||||||+++|++-+.|+.|+|...-+
T Consensus 5 PLL~V~~lsk~Yg~~---~gc~~vsF~l~PGeVLgiVGESGSGKtTLL~~is~rl~p~~G~v~Y~~r~~~~~dl~~msEa 81 (258)
T COG4107 5 PLLSVSGLSKLYGPG---KGCRDVSFDLYPGEVLGIVGESGSGKTTLLKCISGRLTPDAGTVTYRMRDGQPRDLYTMSEA 81 (258)
T ss_pred cceeehhhhhhhCCC---cCccccceeecCCcEEEEEecCCCcHHhHHHHHhcccCCCCCeEEEEcCCCCchhHhhhchH
Confidence 468999999999753 4589999999999999999999999999999999999999999987531
Q ss_pred ---------EEEEecCCC--Cc-c----ccHHHHHh-cCCcccHHHHHHHHHHhcchhHHhcCCCCCccccCCCCCCCCH
Q psy1503 154 ---------VSYASQEPW--IF-A----ATIRQNIL-FGLPYLRRRYADVIRVCALQDDFDSLPNGDFTVVGERGASLSG 216 (265)
Q Consensus 154 ---------i~~v~Q~~~--l~-~----~ti~eni~-~~~~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~vg~~g~~LSg 216 (265)
-|+|.|+|. |- . +.|.|-++ .|.. .|-++ ++. ..++++... -+.+.+.+.+..+||
T Consensus 82 eRR~L~RTeWG~VhQnP~DGLRm~VSAG~NiGERlma~G~R----HYG~i-R~~-a~~WL~~VE-I~~~RiDD~PrtFSG 154 (258)
T COG4107 82 ERRRLLRTEWGFVHQNPRDGLRMQVSAGGNIGERLMAIGAR----HYGNI-RAE-AQDWLEEVE-IDLDRIDDLPRTFSG 154 (258)
T ss_pred HHHHHhhhccceeecCccccceeeeccCCccchhHHhhhhh----hhhhH-HHH-HHHHHHhcc-cCcccccCcccccch
Confidence 799999985 21 1 13333322 1211 11111 111 112222221 122456677889999
Q ss_pred HHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHHhh
Q psy1503 217 GQKARINLARAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGCLT 262 (265)
Q Consensus 217 GqrqRialARal~~~~~illLDEp~s~LD~~~~~~i~~~~i~~~l~ 262 (265)
|++||+.|||-|+..|+++++||||-+||..+..++++ ++.++.+
T Consensus 155 GMqQRLQiARnLVt~PrLvfMDEPTGGLDVSVQARLLD-llrgLv~ 199 (258)
T COG4107 155 GMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLD-LLRGLVR 199 (258)
T ss_pred HHHHHHHHHHHhccCCceEEecCCCCCcchhhHHHHHH-HHHHHHH
Confidence 99999999999999999999999999999999999876 5555543
No 367
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=5.1e-26 Score=194.88 Aligned_cols=162 Identities=20% Similarity=0.330 Sum_probs=129.5
Q ss_pred cEEEEeEEEEeCCCCCCcceeeceEEEcCCcEEEEEcCCCChHHHHHHHHhcC--cCCCccEEEEcCe------------
Q psy1503 88 HVSLDNVTAQWSLQNADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNE--LRISSGKVSLGGT------------ 153 (265)
Q Consensus 88 ~i~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~g~--~~~~~G~i~~~g~------------ 153 (265)
.++++|++.+-..+ +.+|+++||+|++||+.+|.||||||||||.++|+|. |++++|+|.++|.
T Consensus 3 ~L~I~dLhv~v~~~--keILkgvnL~v~~GEvhaiMGPNGsGKSTLa~~i~G~p~Y~Vt~G~I~~~GedI~~l~~~ERAr 80 (251)
T COG0396 3 MLEIKDLHVEVEGK--KEILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPKYEVTEGEILFDGEDILELSPDERAR 80 (251)
T ss_pred eeEEeeeEEEecCc--hhhhcCcceeEcCCcEEEEECCCCCCHHHHHHHHhCCCCceEecceEEECCcccccCCHhHHHh
Confidence 58999999887532 4799999999999999999999999999999999996 4889999999994
Q ss_pred --EEEEecCCCCccc-cHHHHHhcCCcc----------cHHHHHHHHHHhcchhHHhcCCCCCccccCCCCCCCCHHHHH
Q psy1503 154 --VSYASQEPWIFAA-TIRQNILFGLPY----------LRRRYADVIRVCALQDDFDSLPNGDFTVVGERGASLSGGQKA 220 (265)
Q Consensus 154 --i~~v~Q~~~l~~~-ti~eni~~~~~~----------~~~~~~~~~~~~~l~~~i~~l~~g~~t~vg~~g~~LSgGqrq 220 (265)
+...+|.|.=++| ++.+-+..+... ..+++.+.++..++.+.+..- .+ ...+|||+|.
T Consensus 81 ~GifLafQ~P~ei~GV~~~~fLr~a~n~~~~~~~~~~~~~~~~~e~~~~l~~~~~~l~R------~v---N~GFSGGEkK 151 (251)
T COG0396 81 AGIFLAFQYPVEIPGVTNSDFLRAAMNARRGARGILPEFIKELKEKAELLGLDEEFLER------YV---NEGFSGGEKK 151 (251)
T ss_pred cCCEEeecCCccCCCeeHHHHHHHHHHhhhccccccHHHHHHHHHHHHHcCCCHHHhhc------cc---CCCcCcchHH
Confidence 8899999999988 888887643211 123445555666665533211 11 2479999999
Q ss_pred HHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHHh
Q psy1503 221 RINLARAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGCL 261 (265)
Q Consensus 221 RialARal~~~~~illLDEp~s~LD~~~~~~i~~~~i~~~l 261 (265)
|..|+.+++.+|++.|||||-||||...-+.| .+.++.+.
T Consensus 152 R~EilQ~~~lePkl~ILDE~DSGLDIdalk~V-~~~i~~lr 191 (251)
T COG0396 152 RNEILQLLLLEPKLAILDEPDSGLDIDALKIV-AEGINALR 191 (251)
T ss_pred HHHHHHHHhcCCCEEEecCCCcCccHHHHHHH-HHHHHHHh
Confidence 99999999999999999999999999987666 55555544
No 368
>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.94 E-value=2.1e-26 Score=201.45 Aligned_cols=138 Identities=23% Similarity=0.352 Sum_probs=102.0
Q ss_pred CcceeeceEEEcCCcEEEEEcCCCChHHHHHHHHhcCcCCCccEEEEcCe------------EEEEe----cCCCCcccc
Q psy1503 104 DLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSLGGT------------VSYAS----QEPWIFAAT 167 (265)
Q Consensus 104 ~~~l~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g~------------i~~v~----Q~~~l~~~t 167 (265)
.++++||||+|++|++++++|||||||||++|+|.|.+.|++|.|.++|. +++|. |--|-.+
T Consensus 37 ~~AVqdisf~IP~G~ivgflGaNGAGKSTtLKmLTGll~p~~G~v~V~G~~Pf~~~~~~~~~~~~v~gqk~ql~Wdlp-- 114 (325)
T COG4586 37 IEAVQDISFEIPKGEIVGFLGANGAGKSTTLKMLTGLLLPTSGKVRVNGKDPFRRREEYLRSIGLVMGQKLQLWWDLP-- 114 (325)
T ss_pred hhhhheeeeecCCCcEEEEEcCCCCcchhhHHHHhCccccCCCeEEecCcCcchhHHHHHHHHHHHhhhhheeeeech--
Confidence 35799999999999999999999999999999999999999999999984 33332 2222222
Q ss_pred HHHHHh-----cCCccc--HHHHHHHHHHhcchhHHhcCCCCCccccCCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCC
Q psy1503 168 IRQNIL-----FGLPYL--RRRYADVIRVCALQDDFDSLPNGDFTVVGERGASLSGGQKARINLARAVYKNADIYLLDDP 240 (265)
Q Consensus 168 i~eni~-----~~~~~~--~~~~~~~~~~~~l~~~i~~l~~g~~t~vg~~g~~LSgGqrqRialARal~~~~~illLDEp 240 (265)
+.|.+. +.-+.+ .++.....+...++. .+..+...||-|||.|..||.||+++|+|++||||
T Consensus 115 ~~ds~~v~~~Iy~Ipd~~F~~r~~~l~eiLdl~~-----------~lk~~vr~LSlGqRmraeLaaaLLh~p~VLfLDEp 183 (325)
T COG4586 115 ALDSLEVLKLIYEIPDDEFAERLDFLTEILDLEG-----------FLKWPVRKLSLGQRMRAELAAALLHPPKVLFLDEP 183 (325)
T ss_pred hhhhHHHHHHHHhCCHHHHHHHHHHHHHHhcchh-----------hhhhhhhhccchHHHHHHHHHHhcCCCcEEEecCC
Confidence 222221 111111 122333333333333 34456689999999999999999999999999999
Q ss_pred CCCcCHHHHHHHHH
Q psy1503 241 LSAVDMHVGKHLFE 254 (265)
Q Consensus 241 ~s~LD~~~~~~i~~ 254 (265)
|-+||..++..|.+
T Consensus 184 TvgLDV~aq~~ir~ 197 (325)
T COG4586 184 TVGLDVNAQANIRE 197 (325)
T ss_pred ccCcchhHHHHHHH
Confidence 99999999988854
No 369
>KOG0059|consensus
Probab=99.93 E-value=1.7e-25 Score=228.17 Aligned_cols=163 Identities=23% Similarity=0.413 Sum_probs=134.7
Q ss_pred CcEEEEeEEEEeCCCCCCcceeeceEEEcCCcEEEEEcCCCChHHHHHHHHhcCcCCCccEEEEcCe-------------
Q psy1503 87 GHVSLDNVTAQWSLQNADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSLGGT------------- 153 (265)
Q Consensus 87 ~~i~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g~------------- 153 (265)
..+.++|+++.|+.... +++++|+.|++||+.++.|+|||||||++++|.|..+|++|++.++|.
T Consensus 563 ~~~~~~~L~k~y~~~~~--Av~~ls~~V~~gecfgLLG~NGAGKtT~f~mltG~~~~t~G~a~i~g~~i~~~~~~~~~~~ 640 (885)
T KOG0059|consen 563 SALVLNNLSKVYGGKDG--AVRGLSFAVPPGECFGLLGVNGAGKTTTFKMLTGETKPTSGEALIKGHDITVSTDFQQVRK 640 (885)
T ss_pred ceEEEcceeeeecchhh--hhcceEEEecCCceEEEecCCCCCchhhHHHHhCCccCCcceEEEecCccccccchhhhhh
Confidence 46889999999975432 899999999999999999999999999999999999999999999772
Q ss_pred -EEEEecCCCCcc-ccHHHHHhcCC-----c--ccHHHHHHHHHHhcchhHHhcCCCCCccccCCCCCCCCHHHHHHHHH
Q psy1503 154 -VSYASQEPWIFA-ATIRQNILFGL-----P--YLRRRYADVIRVCALQDDFDSLPNGDFTVVGERGASLSGGQKARINL 224 (265)
Q Consensus 154 -i~~v~Q~~~l~~-~ti~eni~~~~-----~--~~~~~~~~~~~~~~l~~~i~~l~~g~~t~vg~~g~~LSgGqrqRial 224 (265)
+|||||+..+++ .|.||++.+.. + .-.+..+..++..++.+.... ...++|||+|.|+++
T Consensus 641 ~iGyCPQ~d~l~~~lT~rEhL~~~arlrG~~~~di~~~v~~ll~~~~L~~~~~~-----------~~~~ySgG~kRkLs~ 709 (885)
T KOG0059|consen 641 QLGYCPQFDALWEELTGREHLEFYARLRGLPRSDIGSAIEKLLRLVGLGPYANK-----------QVRTYSGGNKRRLSF 709 (885)
T ss_pred hcccCCchhhhhhhccHHHHHHHHHHHcCCChhHHHHHHHHHHHHcCChhhhcc-----------chhhCCCcchhhHHH
Confidence 999999999886 59999998632 1 112334455555555544332 246899999999999
Q ss_pred HHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHHhhc
Q psy1503 225 ARAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGCLTS 263 (265)
Q Consensus 225 ARal~~~~~illLDEp~s~LD~~~~~~i~~~~i~~~l~~ 263 (265)
|-|++.+|++++|||||+|+|+.+++++++ ++..+.++
T Consensus 710 aialig~p~vi~LDEPstGmDP~arr~lW~-ii~~~~k~ 747 (885)
T KOG0059|consen 710 AIALIGDPSVILLDEPSTGLDPKARRHLWD-IIARLRKN 747 (885)
T ss_pred HHHHhcCCCEEEecCCCCCCCHHHHHHHHH-HHHHHHhc
Confidence 999999999999999999999999999987 45555543
No 370
>KOG0927|consensus
Probab=99.93 E-value=6.7e-26 Score=213.15 Aligned_cols=160 Identities=22% Similarity=0.320 Sum_probs=133.3
Q ss_pred CcEEEEeEEEEeCCCCCCcceeeceEEEcCCcEEEEEcCCCChHHHHHHHHhcCcCCCccEEEEcC--eEEEEecCCC--
Q psy1503 87 GHVSLDNVTAQWSLQNADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSLGG--TVSYASQEPW-- 162 (265)
Q Consensus 87 ~~i~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g--~i~~v~Q~~~-- 162 (265)
..+.++|++|+|+.+ ..++++++|-|..++.+++|||||||||||++++.|.+.|+.|.|.-.- ++++..|+..
T Consensus 388 pvi~~~nv~F~y~~~--~~iy~~l~fgid~~srvAlVGPNG~GKsTLlKl~~gdl~p~~G~vs~~~H~~~~~y~Qh~~e~ 465 (614)
T KOG0927|consen 388 PVIMVQNVSFGYSDN--PMIYKKLNFGIDLDSRVALVGPNGAGKSTLLKLITGDLQPTIGMVSRHSHNKLPRYNQHLAEQ 465 (614)
T ss_pred CeEEEeccccCCCCc--chhhhhhhcccCcccceeEecCCCCchhhhHHHHhhccccccccccccccccchhhhhhhHhh
Confidence 468999999999753 3689999999999999999999999999999999999999999986543 4777777543
Q ss_pred -CccccHHHHHh--cCCcccHHHHHHHHHHhcchhHHhcCCCCCccccCCCCCCCCHHHHHHHHHHHHHccCCCEEEEeC
Q psy1503 163 -IFAATIRQNIL--FGLPYLRRRYADVIRVCALQDDFDSLPNGDFTVVGERGASLSGGQKARINLARAVYKNADIYLLDD 239 (265)
Q Consensus 163 -l~~~ti~eni~--~~~~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~vg~~g~~LSgGqrqRialARal~~~~~illLDE 239 (265)
.+..+.-|+++ |......+.+..++..|+|..+....|. .+||+|||.||.+||.++..|.++||||
T Consensus 466 ldl~~s~le~~~~~~~~~~~~e~~r~ilgrfgLtgd~q~~p~----------~~LS~Gqr~rVlFa~l~~kqP~lLlLDE 535 (614)
T KOG0927|consen 466 LDLDKSSLEFMMPKFPDEKELEEMRSILGRFGLTGDAQVVPM----------SQLSDGQRRRVLFARLAVKQPHLLLLDE 535 (614)
T ss_pred cCcchhHHHHHHHhccccchHHHHHHHHHHhCCCccccccch----------hhcccccchhHHHHHHHhcCCcEEEecC
Confidence 34668888876 3332345677888999999877766553 6899999999999999999999999999
Q ss_pred CCCCcCHHHHHHHHHHHHHH
Q psy1503 240 PLSAVDMHVGKHLFEDCISG 259 (265)
Q Consensus 240 p~s~LD~~~~~~i~~~~i~~ 259 (265)
||++||..+...+ +++|+.
T Consensus 536 PtnhLDi~tid~l-aeaiNe 554 (614)
T KOG0927|consen 536 PTNHLDIETIDAL-AEAINE 554 (614)
T ss_pred CCcCCCchhHHHH-HHHHhc
Confidence 9999999998765 556654
No 371
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=99.93 E-value=1.6e-25 Score=191.43 Aligned_cols=127 Identities=24% Similarity=0.310 Sum_probs=95.8
Q ss_pred eeceEEEcCCcEEEEEcCCCChHHHHHHHHhcCcCCCcc---------EEEEcC----------eEEEEecCCCCccccH
Q psy1503 108 NAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSG---------KVSLGG----------TVSYASQEPWIFAATI 168 (265)
Q Consensus 108 ~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G---------~i~~~g----------~i~~v~Q~~~l~~~ti 168 (265)
+++++++++| +++|+||||||||||+++|.|+..|..| ++.+.| .++|++|++..+
T Consensus 14 ~~~~l~~~~g-~~~i~G~nGsGKStll~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~vfq~~~~~---- 88 (197)
T cd03278 14 DKTTIPFPPG-LTAIVGPNGSGKSNIIDAIRWVLGEQSAKSLRGEKMSDVIFAGSETRKPANFAEVTLTFDNSDGR---- 88 (197)
T ss_pred CCeeeecCCC-cEEEECCCCCCHHHHHHHHHHHhccccchhhcccCHHHHhccCCCCCCCCceEEEEEEEEcCCCc----
Confidence 6789999999 9999999999999999999999866533 454443 389999999877
Q ss_pred HHHHhcCCcccHHHHHHHHHHhcchhHHhcCCCCCccccCCCCCCCCHHHHHHHHHHHHHc----cCCCEEEEeCCCCCc
Q psy1503 169 RQNILFGLPYLRRRYADVIRVCALQDDFDSLPNGDFTVVGERGASLSGGQKARINLARAVY----KNADIYLLDDPLSAV 244 (265)
Q Consensus 169 ~eni~~~~~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~vg~~g~~LSgGqrqRialARal~----~~~~illLDEp~s~L 244 (265)
|+.. ..+++.++++. +. ........||||||||++|||+++ .+|+++||||||++|
T Consensus 89 -----~~~~-~~~~~~~~l~~----------~~----~~~~~~~~LS~G~kqrl~la~~l~~~~~~~~~illlDEP~~~L 148 (197)
T cd03278 89 -----YSII-SQGDVSEIIEA----------PG----KKVQRLSLLSGGEKALTALALLFAIFRVRPSPFCVLDEVDAAL 148 (197)
T ss_pred -----eeEE-ehhhHHHHHhC----------CC----ccccchhhcCHHHHHHHHHHHHHHHhccCCCCEEEEeCCcccC
Confidence 2211 12233333333 11 123456789999999999999986 567999999999999
Q ss_pred CHHHHHHHHHHHHHHH
Q psy1503 245 DMHVGKHLFEDCISGC 260 (265)
Q Consensus 245 D~~~~~~i~~~~i~~~ 260 (265)
|+.....+.+ .+..+
T Consensus 149 D~~~~~~l~~-~l~~~ 163 (197)
T cd03278 149 DDANVERFAR-LLKEF 163 (197)
T ss_pred CHHHHHHHHH-HHHHh
Confidence 9999988865 44433
No 372
>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.92 E-value=9.4e-25 Score=190.40 Aligned_cols=141 Identities=22% Similarity=0.300 Sum_probs=87.2
Q ss_pred CcceeeceEEEcCCcEEEEEcCCCChHHHHH-HHHhc--------------------CcCCCccEEEEcC-eEEEEecCC
Q psy1503 104 DLTLNAVSITFKPKQLACIIGAIGAGKTSLL-HIILN--------------------ELRISSGKVSLGG-TVSYASQEP 161 (265)
Q Consensus 104 ~~~l~~isl~i~~G~~~~ivG~~GsGKSTLl-~~l~g--------------------~~~~~~G~i~~~g-~i~~v~Q~~ 161 (265)
..+|+++||+|++||+++|+||||||||||+ ..+.. .+.|..+.+ .+ ..++..|++
T Consensus 8 ~~~l~~vsl~i~~Ge~~~l~G~sGsGKSTL~~~~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~ 85 (226)
T cd03270 8 EHNLKNVDVDIPRNKLVVITGVSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMDKPDVDSI--EGLSPAIAIDQK 85 (226)
T ss_pred hhccccceeecCCCcEEEEEcCCCCCHHHHHHHHHHHHHHHHHhhcccchhhhhhcccCccccccc--cCCCceEEecCC
Confidence 4689999999999999999999999999996 33321 112222221 12 133444443
Q ss_pred CC-cc--ccHH---HHHhcCC-cccH---HHHHHHHHHhcchhHHhcCCCCCccccCCCCCCCCHHHHHHHHHHHHHccC
Q psy1503 162 WI-FA--ATIR---QNILFGL-PYLR---RRYADVIRVCALQDDFDSLPNGDFTVVGERGASLSGGQKARINLARAVYKN 231 (265)
Q Consensus 162 ~l-~~--~ti~---eni~~~~-~~~~---~~~~~~~~~~~l~~~i~~l~~g~~t~vg~~g~~LSgGqrqRialARal~~~ 231 (265)
.. .+ .++. +...+.. .+.. ....+.++.+++.+ ........+||||||||++|||||+.+
T Consensus 86 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~----------~~~~~~~~~LSgG~~qrv~laral~~~ 155 (226)
T cd03270 86 TTSRNPRSTVGTVTEIYDYLRLLFARVGIRERLGFLVDVGLGY----------LTLSRSAPTLSGGEAQRIRLATQIGSG 155 (226)
T ss_pred CCCCCCCccHHHHHHHHHHHHHHhhhhhHHHHHHHHHHCCCCc----------ccccCccCcCCHHHHHHHHHHHHHHhC
Confidence 21 11 1222 2111100 0000 00011222222211 123556789999999999999999999
Q ss_pred C--CEEEEeCCCCCcCHHHHHHHHHHH
Q psy1503 232 A--DIYLLDDPLSAVDMHVGKHLFEDC 256 (265)
Q Consensus 232 ~--~illLDEp~s~LD~~~~~~i~~~~ 256 (265)
| +++||||||++||+.+...+++.+
T Consensus 156 p~~~llllDEPt~gLD~~~~~~l~~~l 182 (226)
T cd03270 156 LTGVLYVLDEPSIGLHPRDNDRLIETL 182 (226)
T ss_pred CCCCEEEEeCCccCCCHHHHHHHHHHH
Confidence 8 599999999999999998886643
No 373
>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]
Probab=99.91 E-value=1.7e-23 Score=191.06 Aligned_cols=182 Identities=20% Similarity=0.283 Sum_probs=133.6
Q ss_pred HHHHHHHhcCCCCCCcCCCCCCCCCCcEEEEeEEEEeCCCCCCcceeeceEEEcCCcEEEEEcCCCChHHHHHHHHhcCc
Q psy1503 62 DRVLNFLLLGEHEPRKINSVHSNGKGHVSLDNVTAQWSLQNADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNEL 141 (265)
Q Consensus 62 ~ri~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~g~~ 141 (265)
+||.++-..|+........ +.+.-..++++|+.|.|... ..-+..||++|++||++-|+|.|||||||+++++.|++
T Consensus 297 ~kiakle~~~~~a~~~~~q-~~p~~~~lelrnvrfay~~~--~FhvgPiNl~ikrGelvFliG~NGsGKST~~~LLtGL~ 373 (546)
T COG4615 297 NKIAKLELAPYKADFPRPQ-AFPDWKTLELRNVRFAYQDN--AFHVGPINLTIKRGELVFLIGGNGSGKSTLAMLLTGLY 373 (546)
T ss_pred HHHHHhhcCCccccCCCCC-cCCcccceeeeeeeeccCcc--cceecceeeEEecCcEEEEECCCCCcHHHHHHHHhccc
Confidence 7777664433322222111 11122469999999999743 36689999999999999999999999999999999999
Q ss_pred CCCccEEEEcCe-------------EEEEecCCCCccccH-HHHHhcCCcccHHHHHHHHHHhcchhHHhcCCCCCcccc
Q psy1503 142 RISSGKVSLGGT-------------VSYASQEPWIFAATI-RQNILFGLPYLRRRYADVIRVCALQDDFDSLPNGDFTVV 207 (265)
Q Consensus 142 ~~~~G~i~~~g~-------------i~~v~Q~~~l~~~ti-~eni~~~~~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~v 207 (265)
.|++|+|.+||. ++-|+.|.|||+.++ .|+- .+.+.+.+-++...+..... +.+|--+
T Consensus 374 ~PqsG~I~ldg~pV~~e~ledYR~LfSavFsDyhLF~~ll~~e~~-----as~q~i~~~LqrLel~~kts-l~d~~fs-- 445 (546)
T COG4615 374 QPQSGEILLDGKPVSAEQLEDYRKLFSAVFSDYHLFDQLLGPEGK-----ASPQLIEKWLQRLELAHKTS-LNDGRFS-- 445 (546)
T ss_pred CCCCCceeECCccCCCCCHHHHHHHHHHHhhhHhhhHhhhCCccC-----CChHHHHHHHHHHHHhhhhc-ccCCccc--
Confidence 999999999995 677777888887654 2221 22333444444444433322 2222221
Q ss_pred CCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHH
Q psy1503 208 GERGASLSGGQKARINLARAVYKNADIYLLDDPLSAVDMHVGKHLFEDCI 257 (265)
Q Consensus 208 g~~g~~LSgGqrqRialARal~~~~~illLDEp~s~LD~~~~~~i~~~~i 257 (265)
...||-|||+|+|+--|++-+.||++|||=-+--||+-++..++..+
T Consensus 446 ---~~kLStGQkKRlAll~AllEeR~Ilv~DEWAADQDPaFRR~FY~~lL 492 (546)
T COG4615 446 ---NLKLSTGQKKRLALLLALLEERDILVLDEWAADQDPAFRREFYQVLL 492 (546)
T ss_pred ---ccccccchHHHHHHHHHHHhhCCeEEeehhhccCChHHHHHHHHHHh
Confidence 24799999999999999999999999999999999999999888765
No 374
>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.91 E-value=2.2e-24 Score=189.25 Aligned_cols=162 Identities=19% Similarity=0.257 Sum_probs=94.3
Q ss_pred EEEEeEEEEeCCCCCCcceeeceEEEcCCcEEEEEcCCCChHHHHHHHHhc----------------CcCCCccEEEEcC
Q psy1503 89 VSLDNVTAQWSLQNADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILN----------------ELRISSGKVSLGG 152 (265)
Q Consensus 89 i~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~g----------------~~~~~~G~i~~~g 152 (265)
|+++|.- +|. +..++++++ |++++|+||||||||||+++|.+ ++.+.+|.....+
T Consensus 4 i~~~nfk-sy~---~~~~~~~~~-----~~~~~i~GpNGsGKStll~ai~~~l~~~~~~~~~~~~~~li~~~~~~~~~~~ 74 (243)
T cd03272 4 VIIQGFK-SYK---DQTVIEPFS-----PKHNVVVGRNGSGKSNFFAAIRFVLSDEYTHLREEQRQALLHEGSGPSVMSA 74 (243)
T ss_pred EEEeCcc-Ccc---cCcccccCC-----CCcEEEECCCCCCHHHHHHHHHHHHcCchhhhhhhhHHHhEeCCCCCCCceE
Confidence 5555543 353 234667665 78999999999999999999983 3444444111111
Q ss_pred eEEEEecCCCC-cc-----ccHH-------HHHhcCC-cccHHHHHHHHHHhcchhHH--hcCCCCC-------ccccCC
Q psy1503 153 TVSYASQEPWI-FA-----ATIR-------QNILFGL-PYLRRRYADVIRVCALQDDF--DSLPNGD-------FTVVGE 209 (265)
Q Consensus 153 ~i~~v~Q~~~l-~~-----~ti~-------eni~~~~-~~~~~~~~~~~~~~~l~~~i--~~l~~g~-------~t~vg~ 209 (265)
.+.+++|++.- ++ -+++ +++.+.. ....+++...+..+++...- ...+.+. .....+
T Consensus 75 ~v~i~~~~~~~~~~~~~~~~~i~r~ig~~~~~~~l~~~~~t~~ei~~~l~~~gl~~~~~~~~~~qg~i~~l~~l~~~~~~ 154 (243)
T cd03272 75 YVEIIFDNSDNRFPIDKEEVRLRRTIGLKKDEYFLDKKNVTKNDVMNLLESAGFSRSNPYYIVPQGKINSLTNMKQDEQQ 154 (243)
T ss_pred EEEEEEEcCCCccCCCCCEEEEEEEEECCCCEEEECCeEcCHHHHHHHHHHcCCCCCCCcEEEEcCchHHhhhccccccc
Confidence 23333333210 00 0111 1111111 11223344444444432210 0011111 112356
Q ss_pred CCCCCCHHHHHHHHHHHHHc----cCCCEEEEeCCCCCcCHHHHHHHHHHHHHHH
Q psy1503 210 RGASLSGGQKARINLARAVY----KNADIYLLDDPLSAVDMHVGKHLFEDCISGC 260 (265)
Q Consensus 210 ~g~~LSgGqrqRialARal~----~~~~illLDEp~s~LD~~~~~~i~~~~i~~~ 260 (265)
++..||||||||++||||++ .+|+++||||||++||+.+.+.+++ .+..+
T Consensus 155 ~~~~lS~G~~~r~~la~~l~~~~~~~~~illlDEp~~~ld~~~~~~~~~-~l~~~ 208 (243)
T cd03272 155 EMQQLSGGQKSLVALALIFAIQKCDPAPFYLFDEIDAALDAQYRTAVAN-MIKEL 208 (243)
T ss_pred cccccCHHHHHHHHHHHHHHHhccCCCCEEEEECCccCCCHHHHHHHHH-HHHHH
Confidence 78899999999999999996 3689999999999999999998866 44444
No 375
>cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.90 E-value=2.5e-23 Score=184.90 Aligned_cols=145 Identities=24% Similarity=0.373 Sum_probs=93.5
Q ss_pred ceeeceEEEcCCcEEEEEcCCCChHHHHHHHHh-----cC-----cCCCccEEEEc----CeEEEEecCCCCc-------
Q psy1503 106 TLNAVSITFKPKQLACIIGAIGAGKTSLLHIIL-----NE-----LRISSGKVSLG----GTVSYASQEPWIF------- 164 (265)
Q Consensus 106 ~l~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~-----g~-----~~~~~G~i~~~----g~i~~v~Q~~~l~------- 164 (265)
.|+|++++|+.|.+++|+|+||||||||++.++ +. ..|..++...+ ..+-+|.|.|.--
T Consensus 10 nl~~v~~~ip~g~~~~vtGvSGsGKStL~~~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~vdq~pi~~~~rs~~~ 89 (261)
T cd03271 10 NLKNIDVDIPLGVLTCVTGVSGSGKSSLINDTLYPALARRLHLKKEQPGNHDRIEGLEHIDKVIVIDQSPIGRTPRSNPA 89 (261)
T ss_pred cCCCceeeccCCcEEEEECCCCCchHHHHHHHHHHHHHHHhcccccCCCcccccccccccCceEEecCCcCCCCCCCcHH
Confidence 499999999999999999999999999998663 11 12333322211 1255566654211
Q ss_pred ----------------------------------------cccHHHHHhcCCcccHHHHHHHHHHhcchhHHhcCCCCCc
Q psy1503 165 ----------------------------------------AATIRQNILFGLPYLRRRYADVIRVCALQDDFDSLPNGDF 204 (265)
Q Consensus 165 ----------------------------------------~~ti~eni~~~~~~~~~~~~~~~~~~~l~~~i~~l~~g~~ 204 (265)
..|+.||+.|..... +. ....+.+..+ |+.
T Consensus 90 ty~~~~~~ir~~fC~~C~G~r~~~~~l~~~~~g~~i~~v~~ltv~e~~~~~~~~~-----~~---~~~~~~L~~v--gL~ 159 (261)
T cd03271 90 TYTGVFDEIRELFCEVCKGKRYNRETLEVRYKGKSIADVLDMTVEEALEFFENIP-----KI---ARKLQTLCDV--GLG 159 (261)
T ss_pred HHHHHHHHHHHhcCccccccccCHHHHhcCcCCCCHHHHhcCCHHHHHHHHHhhh-----hH---HHHHHHHHHc--CCc
Confidence 123333332211100 00 0011122222 233
Q ss_pred c-ccCCCCCCCCHHHHHHHHHHHHHccC---CCEEEEeCCCCCcCHHHHHHHHHHHHHHHh
Q psy1503 205 T-VVGERGASLSGGQKARINLARAVYKN---ADIYLLDDPLSAVDMHVGKHLFEDCISGCL 261 (265)
Q Consensus 205 t-~vg~~g~~LSgGqrqRialARal~~~---~~illLDEp~s~LD~~~~~~i~~~~i~~~l 261 (265)
. ..++...+|||||+||++|||+|+++ |+++||||||++||+.....+.+ .+..+.
T Consensus 160 ~l~l~~~~~~LSgGe~QRl~LAraL~~~~~~p~lllLDEPtsgLD~~~~~~l~~-~L~~l~ 219 (261)
T cd03271 160 YIKLGQPATTLSGGEAQRIKLAKELSKRSTGKTLYILDEPTTGLHFHDVKKLLE-VLQRLV 219 (261)
T ss_pred hhhhcCccccCCHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCCHHHHHHHHH-HHHHHH
Confidence 2 35777889999999999999999996 79999999999999999988865 455443
No 376
>KOG0064|consensus
Probab=99.90 E-value=2.2e-23 Score=195.69 Aligned_cols=166 Identities=25% Similarity=0.422 Sum_probs=136.1
Q ss_pred CcEEEEeEEEEeCCCCCCcceeeceEEEcCCcEEEEEcCCCChHHHHHHHHhcCcCCCccEEEEcC--eEEEEecCCCCc
Q psy1503 87 GHVSLDNVTAQWSLQNADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSLGG--TVSYASQEPWIF 164 (265)
Q Consensus 87 ~~i~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g--~i~~v~Q~~~l~ 164 (265)
..|.++|+-.--|. ...++..++|+|++|-.+-|+||||||||+|.+.|.|+.+...|...+.. ++-|+||.|+.-
T Consensus 480 ~gI~lenIpvItP~--~~vvv~~Ltf~i~~G~hLLItGPNGCGKSSLfRILggLWPvy~g~L~~P~~~~mFYIPQRPYms 557 (728)
T KOG0064|consen 480 NGIILENIPVITPA--GDVLVPKLTFQIEPGMHLLITGPNGCGKSSLFRILGGLWPVYNGLLSIPRPNNIFYIPQRPYMS 557 (728)
T ss_pred cceEEecCceeccC--cceeecceeEEecCCceEEEECCCCccHHHHHHHHhccCcccCCeeecCCCcceEeccCCCccC
Confidence 34888888776654 35678999999999999999999999999999999999999999887653 599999999987
Q ss_pred cccHHHHHhcCCc--------ccHHHHHHHHHHhcchhHHhcCCCCCccccCCCCCCCCHHHHHHHHHHHHHccCCCEEE
Q psy1503 165 AATIRQNILFGLP--------YLRRRYADVIRVCALQDDFDSLPNGDFTVVGERGASLSGGQKARINLARAVYKNADIYL 236 (265)
Q Consensus 165 ~~ti~eni~~~~~--------~~~~~~~~~~~~~~l~~~i~~l~~g~~t~vg~~g~~LSgGqrqRialARal~~~~~ill 236 (265)
-+|.||.|.+... +.+....++++.+.|+..+++ ..|.+. +-+=-.-||||+|||+++||.+|++|+..+
T Consensus 558 ~gtlRDQIIYPdS~e~~~~kg~~d~dL~~iL~~v~L~~i~qr-~~g~da-~~dWkd~LsgGekQR~~mARm~yHrPkyal 635 (728)
T KOG0064|consen 558 GGTLRDQIIYPDSSEQMKRKGYTDQDLEAILDIVHLEHILQR-EGGWDA-VRDWKDVLSGGEKQRMGMARMFYHRPKYAL 635 (728)
T ss_pred cCcccceeecCCcHHHHHhcCCCHHHHHHHHHHhhHHHHHHh-ccChhh-hccHHhhccchHHHHHHHHHHHhcCcchhh
Confidence 7899999998753 234566777888777765543 333332 222234699999999999999999999999
Q ss_pred EeCCCCCcCHHHHHHHHHHH
Q psy1503 237 LDDPLSAVDMHVGKHLFEDC 256 (265)
Q Consensus 237 LDEp~s~LD~~~~~~i~~~~ 256 (265)
|||+||++-.+.+..||+.+
T Consensus 636 LDEcTsAvsidvE~~i~~~a 655 (728)
T KOG0064|consen 636 LDECTSAVSIDVEGKIFQAA 655 (728)
T ss_pred hhhhhcccccchHHHHHHHH
Confidence 99999999999999999865
No 377
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=99.88 E-value=1.4e-22 Score=174.25 Aligned_cols=126 Identities=27% Similarity=0.296 Sum_probs=95.0
Q ss_pred ceEEEcCCcEEEEEcCCCChHHHHHHHHh----cCcCCCccEEEEcC----------eEEEEecCC-----CCcc-ccHH
Q psy1503 110 VSITFKPKQLACIIGAIGAGKTSLLHIIL----NELRISSGKVSLGG----------TVSYASQEP-----WIFA-ATIR 169 (265)
Q Consensus 110 isl~i~~G~~~~ivG~~GsGKSTLl~~l~----g~~~~~~G~i~~~g----------~i~~v~Q~~-----~l~~-~ti~ 169 (265)
.++++.+| +++|+||||||||||+.+|. |..+|..|.+..+. .+++++|++ .+.. .|+.
T Consensus 16 ~~l~~~~g-~~~i~G~NGsGKTTLl~ai~~~l~G~~~~~~~~~~~~~~~i~~~~~~~~v~~~f~~~~~~~~~v~r~~~~~ 94 (204)
T cd03240 16 SEIEFFSP-LTLIVGQNGAGKTTIIEALKYALTGELPPNSKGGAHDPKLIREGEVRAQVKLAFENANGKKYTITRSLAIL 94 (204)
T ss_pred eEEecCCC-eEEEECCCCCCHHHHHHHHHHHHcCCCCcccccccchHHHHhCCCCcEEEEEEEEeCCCCEEEEEEEhhHh
Confidence 34566677 99999999999999999994 99999888654211 389999988 2232 3889
Q ss_pred HHHhcCCcccHHHHHHHHHHhcchhHHhcCCCCCccccCCCCCCCCHHHHHH------HHHHHHHccCCCEEEEeCCCCC
Q psy1503 170 QNILFGLPYLRRRYADVIRVCALQDDFDSLPNGDFTVVGERGASLSGGQKAR------INLARAVYKNADIYLLDDPLSA 243 (265)
Q Consensus 170 eni~~~~~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~vg~~g~~LSgGqrqR------ialARal~~~~~illLDEp~s~ 243 (265)
+|+.+.. .++..+. + .+....||+||+|| ++||||++.+|+++|||||+++
T Consensus 95 ~~~~~~~---~~~~~~~---------~-----------~~~~~~LS~G~~~~~~la~rlala~al~~~p~illlDEP~~~ 151 (204)
T cd03240 95 ENVIFCH---QGESNWP---------L-----------LDMRGRCSGGEKVLASLIIRLALAETFGSNCGILALDEPTTN 151 (204)
T ss_pred hceeeec---hHHHHHH---------H-----------hcCccccCccHHHHHHHHHHHHHHHHhccCCCEEEEcCCccc
Confidence 9987652 1111111 1 34457899999996 7899999999999999999999
Q ss_pred cCHHHHH-HHHHHHHHHH
Q psy1503 244 VDMHVGK-HLFEDCISGC 260 (265)
Q Consensus 244 LD~~~~~-~i~~~~i~~~ 260 (265)
||+.... .+.+ .+..+
T Consensus 152 LD~~~~~~~l~~-~l~~~ 168 (204)
T cd03240 152 LDEENIEESLAE-IIEER 168 (204)
T ss_pred cCHHHHHHHHHH-HHHHH
Confidence 9999988 6655 33333
No 378
>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.88 E-value=1.2e-22 Score=179.58 Aligned_cols=143 Identities=24% Similarity=0.315 Sum_probs=98.9
Q ss_pred CcEEEEEcCCCChHHHHHHHHhcCcCCC-ccEEEEcC----------------eEEEEecCCC---------Cc-cccHH
Q psy1503 117 KQLACIIGAIGAGKTSLLHIILNELRIS-SGKVSLGG----------------TVSYASQEPW---------IF-AATIR 169 (265)
Q Consensus 117 G~~~~ivG~~GsGKSTLl~~l~g~~~~~-~G~i~~~g----------------~i~~v~Q~~~---------l~-~~ti~ 169 (265)
..+++||||||||||||+++|.+.+.+. .|+++..+ .+++++|++. +. ..||.
T Consensus 25 ~~~~~IvG~NGsGKStll~Ai~~ll~~~~~~~~r~~~~~~li~~~~~~~~~~~~v~~~fq~~~~~~~~~~~~~~~~ltV~ 104 (251)
T cd03273 25 PQFNAITGLNGSGKSNILDAICFVLGITNLSTVRASNLQDLIYKRGQAGITKASVTIVFDNSDKSQSPIGFENYPEITVT 104 (251)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhcccccccccccCHHHHhhcCCCCCCcEEEEEEEEEcCCcccCcccccCCceEEEE
Confidence 5699999999999999999999998876 34555432 4889999852 22 24777
Q ss_pred HHHhcCCc---------ccHHHHHHHHHHhcchhH-Hh-cCCCCC-------ccccCCCCCCCCHHHHHHHHHHHHHc--
Q psy1503 170 QNILFGLP---------YLRRRYADVIRVCALQDD-FD-SLPNGD-------FTVVGERGASLSGGQKARINLARAVY-- 229 (265)
Q Consensus 170 eni~~~~~---------~~~~~~~~~~~~~~l~~~-i~-~l~~g~-------~t~vg~~g~~LSgGqrqRialARal~-- 229 (265)
+|+..+.. ...+++.+.++.+++..+ .. .+++|. .........+||||||||++||||++
T Consensus 105 r~I~~~~~~~~~in~~~~~~~~v~~~L~~vgL~~~~~~~~i~Qg~v~~~~~~~~~~~~~~~~lS~G~~qr~~la~al~~~ 184 (251)
T cd03273 105 RQIVLGGTNKYLINGHRAQQQRVQDLFQSVQLNVNNPHFLIMQGRITKVLNMGGVWKESLTELSGGQRSLVALSLILALL 184 (251)
T ss_pred EEEEcCCceEEEECCEEeeHHHHHHHHHHcCCCCCCceEEEeehHHHHHHHhHHhhcccccccCHHHHHHHHHHHHHHHh
Confidence 77765431 112345555666655310 00 000000 01234567799999999999999997
Q ss_pred --cCCCEEEEeCCCCCcCHHHHHHHHHHHHHHH
Q psy1503 230 --KNADIYLLDDPLSAVDMHVGKHLFEDCISGC 260 (265)
Q Consensus 230 --~~~~illLDEp~s~LD~~~~~~i~~~~i~~~ 260 (265)
.+|+++||||||++||+....++++ .+..+
T Consensus 185 ~~~~~~illlDEPt~~ld~~~~~~~~~-~l~~~ 216 (251)
T cd03273 185 LFKPAPMYILDEVDAALDLSHTQNIGR-MIKTH 216 (251)
T ss_pred hccCCCEEEEeCCCcCCCHHHHHHHHH-HHHHH
Confidence 5789999999999999999998866 44443
No 379
>KOG0066|consensus
Probab=99.88 E-value=2.4e-22 Score=185.65 Aligned_cols=159 Identities=21% Similarity=0.309 Sum_probs=122.1
Q ss_pred CcEEEEeEEEEeCCCCCCcceeeceEEEcCCcEEEEEcCCCChHHHHHHHHhcCcCCCccEEEEcC--eEEEEecCCC--
Q psy1503 87 GHVSLDNVTAQWSLQNADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSLGG--TVSYASQEPW-- 162 (265)
Q Consensus 87 ~~i~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g--~i~~v~Q~~~-- 162 (265)
+.+-+.+|+|.|++ ..+.++.++|-|.--..+|||||||.||||||++|.|.+.|+.|+.+-+- +||+..|...
T Consensus 585 PvLGlH~VtFgy~g--qkpLFkkldFGiDmdSRiaIVGPNGVGKSTlLkLL~Gkl~P~~GE~RKnhrL~iG~FdQh~~E~ 662 (807)
T KOG0066|consen 585 PVLGLHDVTFGYPG--QKPLFKKLDFGIDMDSRIAIVGPNGVGKSTLLKLLIGKLDPNDGELRKNHRLRIGWFDQHANEA 662 (807)
T ss_pred CeeecccccccCCC--CCchhhcccccccccceeEEECCCCccHHHHHHHHhcCCCCCcchhhccceeeeechhhhhHHh
Confidence 46788999999975 36789999999999999999999999999999999999999999987665 4999988753
Q ss_pred Cc-cccHHHHHhcCCcccHHHHHHHHHHhcchhHHhcCCCCCccccCCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCCC
Q psy1503 163 IF-AATIRQNILFGLPYLRRRYADVIRVCALQDDFDSLPNGDFTVVGERGASLSGGQKARINLARAVYKNADIYLLDDPL 241 (265)
Q Consensus 163 l~-~~ti~eni~~~~~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~vg~~g~~LSgGqrqRialARal~~~~~illLDEp~ 241 (265)
|- ..|..|.+.-+.....+..++.+-..+|..-- +| -....|||||+.||+||-..++.|||+||||||
T Consensus 663 L~~Eetp~EyLqr~FNlpyq~ARK~LG~fGL~sHA-------HT---ikikdLSGGQKaRValaeLal~~PDvlILDEPT 732 (807)
T KOG0066|consen 663 LNGEETPVEYLQRKFNLPYQEARKQLGTFGLASHA-------HT---IKIKDLSGGQKARVALAELALGGPDVLILDEPT 732 (807)
T ss_pred hccccCHHHHHHHhcCCChHHHHHHhhhhhhhhcc-------ce---EeeeecCCcchHHHHHHHHhcCCCCEEEecCCC
Confidence 22 34777776533322222333444444442211 11 123579999999999999999999999999999
Q ss_pred CCcCHHHHHHHHHHHHH
Q psy1503 242 SAVDMHVGKHLFEDCIS 258 (265)
Q Consensus 242 s~LD~~~~~~i~~~~i~ 258 (265)
++||.++...+ -++|+
T Consensus 733 NNLDIESIDAL-aEAIn 748 (807)
T KOG0066|consen 733 NNLDIESIDAL-AEAIN 748 (807)
T ss_pred CCcchhhHHHH-HHHHH
Confidence 99999998776 34554
No 380
>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends. They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.
Probab=99.87 E-value=3.5e-22 Score=172.54 Aligned_cols=151 Identities=18% Similarity=0.159 Sum_probs=99.8
Q ss_pred cEEEEeEEEEeCCCCCCcceeeceEEEc-CCcEEEEEcCCCChHHHHHHHHhc-CcCCCccEEEEc------------Ce
Q psy1503 88 HVSLDNVTAQWSLQNADLTLNAVSITFK-PKQLACIIGAIGAGKTSLLHIILN-ELRISSGKVSLG------------GT 153 (265)
Q Consensus 88 ~i~~~~~~~~~~~~~~~~~l~~isl~i~-~G~~~~ivG~~GsGKSTLl~~l~g-~~~~~~G~i~~~------------g~ 153 (265)
.|+++|+. +|.. -++++|... +|++++|+||||||||||+++|.+ ++.+..+....+ ..
T Consensus 5 ~i~l~nf~-~y~~------~~~i~~~~~~~~~~~~i~G~NGsGKSTll~~i~~~l~g~~~~~~~~~~~~~~~~~~~~~~~ 77 (213)
T cd03279 5 KLELKNFG-PFRE------EQVIDFTGLDNNGLFLICGPTGAGKSTILDAITYALYGKTPRYGRQENLRSVFAPGEDTAE 77 (213)
T ss_pred EEEEECCc-CcCC------ceEEeCCCCCccCEEEEECCCCCCHHHHHHHheeeEecCccccccchhHHHHhcCCCccEE
Confidence 57888887 6532 156677654 589999999999999999999995 444444444321 13
Q ss_pred EEEEecCCCCccccHHHHHhcCCcccHHHHHHHHHHhcchhHHhcCCCC-CccccCCCCCCCCHHHHHHHHHHHHHcc--
Q psy1503 154 VSYASQEPWIFAATIRQNILFGLPYLRRRYADVIRVCALQDDFDSLPNG-DFTVVGERGASLSGGQKARINLARAVYK-- 230 (265)
Q Consensus 154 i~~v~Q~~~l~~~ti~eni~~~~~~~~~~~~~~~~~~~l~~~i~~l~~g-~~t~vg~~g~~LSgGqrqRialARal~~-- 230 (265)
|++++|++...-...+ +. ..+.+.+.+.. . ++.+ +++.+...+.+||||||||++||||++.
T Consensus 78 v~~~f~~~~~~~~~~r----~~-gl~~~~~~~~~---~-------l~~g~l~~~l~~~~~~lS~G~~~r~~la~al~~~p 142 (213)
T cd03279 78 VSFTFQLGGKKYRVER----SR-GLDYDQFTRIV---L-------LPQGEFDRFLARPVSTLSGGETFLASLSLALALSE 142 (213)
T ss_pred EEEEEEECCeEEEEEE----ec-CCCHHHHHHhh---h-------hhhcchHHHhcCCccccCHHHHHHHHHHHHHHhHH
Confidence 8888888743221111 11 11222222111 0 1111 2334456778999999999999999974
Q ss_pred --------CCCEEEEeCCCCCcCHHHHHHHHHHHHHHHh
Q psy1503 231 --------NADIYLLDDPLSAVDMHVGKHLFEDCISGCL 261 (265)
Q Consensus 231 --------~~~illLDEp~s~LD~~~~~~i~~~~i~~~l 261 (265)
+|+++||||||++||+.+...+.+ .+..+.
T Consensus 143 ~~~~~~~~~~~~lllDEp~~~lD~~~~~~~~~-~l~~~~ 180 (213)
T cd03279 143 VLQNRGGARLEALFIDEGFGTLDPEALEAVAT-ALELIR 180 (213)
T ss_pred HhhhccCCCCCEEEEeCCcccCCHHHHHHHHH-HHHHHH
Confidence 679999999999999999988754 555443
No 381
>KOG0062|consensus
Probab=99.87 E-value=1.7e-22 Score=189.34 Aligned_cols=149 Identities=25% Similarity=0.372 Sum_probs=101.5
Q ss_pred CcEEEEeEEEEeCCCCCCcceeeceEEEcCCcEEEEEcCCCChHHHHHHHHhc---CcCCCccEEEEcCeEEEEecC-CC
Q psy1503 87 GHVSLDNVTAQWSLQNADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILN---ELRISSGKVSLGGTVSYASQE-PW 162 (265)
Q Consensus 87 ~~i~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~g---~~~~~~G~i~~~g~i~~v~Q~-~~ 162 (265)
..|.+.+++.+|+ ++..|++-++++..|..+++||+||+||||||++|.. ..-|.+-++. | -+++-. ..
T Consensus 79 ~Di~~~~fdLa~G---~k~LL~~a~L~L~~GrRYGLvGrNG~GKsTLLRaia~~~v~~f~veqE~~--g--~~t~~~~~~ 151 (582)
T KOG0062|consen 79 KDIHIDNFDLAYG---GKILLNKANLTLSRGRRYGLVGRNGIGKSTLLRAIANGQVSGFHVEQEVR--G--DDTEALQSV 151 (582)
T ss_pred cceeeeeeeeeec---chhhhcCCceeeecccccceeCCCCCcHHHHHHHHHhcCcCccCchhhee--c--cchHHHhhh
Confidence 4689999999996 3568999999999999999999999999999999988 1112221111 0 011111 01
Q ss_pred CccccHHHHHhcCCc-c----c-HHHHHHHHHHhcchhHHhcCCCCCccccCCCCCCCCHHHHHHHHHHHHHccCCCEEE
Q psy1503 163 IFAATIRQNILFGLP-Y----L-RRRYADVIRVCALQDDFDSLPNGDFTVVGERGASLSGGQKARINLARAVYKNADIYL 236 (265)
Q Consensus 163 l~~~ti~eni~~~~~-~----~-~~~~~~~~~~~~l~~~i~~l~~g~~t~vg~~g~~LSgGqrqRialARal~~~~~ill 236 (265)
+-..+-+.-+..-.+ . . .+-+.+++.-.+..++....| ...||||.|.|++|||||.++|||||
T Consensus 152 l~~D~~~~dfl~~e~~l~~~~~l~ei~~~~L~glGFt~emq~~p----------t~slSGGWrMrlaLARAlf~~pDlLL 221 (582)
T KOG0062|consen 152 LESDTERLDFLAEEKELLAGLTLEEIYDKILAGLGFTPEMQLQP----------TKSLSGGWRMRLALARALFAKPDLLL 221 (582)
T ss_pred hhccHHHHHHHHhhhhhhccchHHHHHHHHHHhCCCCHHHHhcc----------ccccCcchhhHHHHHHHHhcCCCEEe
Confidence 222233333222110 0 1 111222444555555555544 36899999999999999999999999
Q ss_pred EeCCCCCcCHHHHHHH
Q psy1503 237 LDDPLSAVDMHVGKHL 252 (265)
Q Consensus 237 LDEp~s~LD~~~~~~i 252 (265)
|||||+.||......+
T Consensus 222 LDEPTNhLDv~av~WL 237 (582)
T KOG0062|consen 222 LDEPTNHLDVVAVAWL 237 (582)
T ss_pred ecCCcccchhHHHHHH
Confidence 9999999999987765
No 382
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=99.87 E-value=7.2e-22 Score=183.10 Aligned_cols=145 Identities=21% Similarity=0.370 Sum_probs=108.0
Q ss_pred ceeeceEE-----EcCCcEEEEEcCCCChHHHHHHHHhcCcCCCccEEEEcCeEEEEecCCC-CccccHHHHHhcCCc--
Q psy1503 106 TLNAVSIT-----FKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSLGGTVSYASQEPW-IFAATIRQNILFGLP-- 177 (265)
Q Consensus 106 ~l~~isl~-----i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g~i~~v~Q~~~-l~~~ti~eni~~~~~-- 177 (265)
.+.+..|+ |..||+++++||||-||||++++|+|.++|++|+ ..+-+++|-||--. -|++||++-+.-..+
T Consensus 351 ~~g~F~L~V~~G~i~~gEvigilGpNgiGKTTFvk~LAG~ikPdeg~-~~~~~vSyKPQyI~~~~~gtV~~~l~~~~~~~ 429 (591)
T COG1245 351 TYGDFKLEVEEGEIYDGEVIGILGPNGIGKTTFVKLLAGVIKPDEGS-EEDLKVSYKPQYISPDYDGTVEDLLRSAIRSA 429 (591)
T ss_pred ecCceEEEecCCeeecceEEEEECCCCcchHHHHHHHhccccCCCCC-CccceEeecceeecCCCCCcHHHHHHHhhhhh
Confidence 34455555 4567889999999999999999999999999998 44456999999632 478999987754322
Q ss_pred ccHHHHH-HHHHHhcchhHHhcCCCCCccccCCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHH
Q psy1503 178 YLRRRYA-DVIRVCALQDDFDSLPNGDFTVVGERGASLSGGQKARINLARAVYKNADIYLLDDPLSAVDMHVGKHLFEDC 256 (265)
Q Consensus 178 ~~~~~~~-~~~~~~~l~~~i~~l~~g~~t~vg~~g~~LSgGqrqRialARal~~~~~illLDEp~s~LD~~~~~~i~~~~ 256 (265)
+...+++ ++++-..+++ .+..+..+||||+.||||||-||.+++|+|+||||++.||.+.+-. ..++
T Consensus 430 ~~~s~~~~ei~~pl~l~~-----------i~e~~v~~LSGGELQRvaIaa~L~reADlYllDEPSA~LDvEqR~~-vakv 497 (591)
T COG1245 430 FGSSYFKTEIVKPLNLED-----------LLERPVDELSGGELQRVAIAAALSREADLYLLDEPSAYLDVEQRII-VAKV 497 (591)
T ss_pred cccchhHHhhcCccchHH-----------HHhcccccCCchhHHHHHHHHHhccccCEEEecCchhhccHHHHHH-HHHH
Confidence 2223332 3333333433 3345567899999999999999999999999999999999986543 4667
Q ss_pred HHHHhhc
Q psy1503 257 ISGCLTS 263 (265)
Q Consensus 257 i~~~l~~ 263 (265)
|.++..+
T Consensus 498 IRR~~e~ 504 (591)
T COG1245 498 IRRFIEN 504 (591)
T ss_pred HHHHHhh
Confidence 7666543
No 383
>KOG0065|consensus
Probab=99.87 E-value=3.3e-22 Score=203.88 Aligned_cols=145 Identities=28% Similarity=0.448 Sum_probs=119.0
Q ss_pred CCcceeeceEEEcCCcEEEEEcCCCChHHHHHHHHhcCcC--CCccEEEEcCe----------EEEEecCCCCcc-ccHH
Q psy1503 103 ADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELR--ISSGKVSLGGT----------VSYASQEPWIFA-ATIR 169 (265)
Q Consensus 103 ~~~~l~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~--~~~G~i~~~g~----------i~~v~Q~~~l~~-~ti~ 169 (265)
.+..|+||+=-++||.++|++|+|||||||||++|+|-.. -.+|+|.++|. +|||.|+..-.+ .|||
T Consensus 803 ~~qLL~~V~G~~kPG~LTALMG~SGAGKTTLLdvLA~R~t~G~I~Gdi~i~G~p~~q~tF~R~~GYvqQ~DiH~~~~TVr 882 (1391)
T KOG0065|consen 803 TRQLLNNVSGAFKPGVLTALMGESGAGKTTLLDVLAGRKTGGYIEGDILISGFPKDQETFARVSGYVEQQDIHSPELTVR 882 (1391)
T ss_pred ceEhhhcCceEecCCceeehhcCCCCchHHHHHHHhcCcccceEEeEEEECCeeCchhhhccccceeecccccCcccchH
Confidence 3568999999999999999999999999999999999743 24688999984 999999876554 5999
Q ss_pred HHHhcCC----c--c-cH---HHHHHHHHHhcchhHHhcCCCCCccccCCCCCCCCHHHHHHHHHHHHHccCC-CEEEEe
Q psy1503 170 QNILFGL----P--Y-LR---RRYADVIRVCALQDDFDSLPNGDFTVVGERGASLSGGQKARINLARAVYKNA-DIYLLD 238 (265)
Q Consensus 170 eni~~~~----~--~-~~---~~~~~~~~~~~l~~~i~~l~~g~~t~vg~~g~~LSgGqrqRialARal~~~~-~illLD 238 (265)
|-+.|.. + . ++ +.++++++..++.+. -+..||..|..||..||+|+.||--|+.+| .|++||
T Consensus 883 ESL~fSA~LRlp~~v~~~ek~~yVe~Vi~lleL~~~-------~daiVG~~G~GLs~eQRKrLTIgVELvA~P~~ilFLD 955 (1391)
T KOG0065|consen 883 ESLRFSAALRLPKEVSDEEKYEYVEEVIELLELKEY-------ADALVGLPGSGLSTEQRKRLTIGVELVANPSSILFLD 955 (1391)
T ss_pred HHHHHHHHHcCCCcCCHHHHHHHHHHHHHHhCchhh-------hhhhccCCCCCCCHHHhceeeEEEEEecCCceeEEec
Confidence 9998753 1 1 12 234566666655432 245799999999999999999999999999 888899
Q ss_pred CCCCCcCHHHHHHHHH
Q psy1503 239 DPLSAVDMHVGKHLFE 254 (265)
Q Consensus 239 Ep~s~LD~~~~~~i~~ 254 (265)
|||||||+.++.-|++
T Consensus 956 EPTSGLDsqaA~~i~~ 971 (1391)
T KOG0065|consen 956 EPTSGLDSQAAAIVMR 971 (1391)
T ss_pred CCCCCccHHHHHHHHH
Confidence 9999999999887754
No 384
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=99.86 E-value=2.6e-21 Score=183.57 Aligned_cols=165 Identities=21% Similarity=0.350 Sum_probs=121.0
Q ss_pred cEEEEeEEEEeCCCCCCcceeeceEEEcCCcEEEEEcCCCChHHHHHHHHhcCcCCCccEEEEcCe--------------
Q psy1503 88 HVSLDNVTAQWSLQNADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSLGGT-------------- 153 (265)
Q Consensus 88 ~i~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g~-------------- 153 (265)
.++++|++.. ..++|+||++++||+++|.|-.|||+|-|+++|.|..++.+|+|.++|+
T Consensus 263 ~l~v~~l~~~-------~~~~dvSf~vr~GEIlGiaGLvGaGRTEl~~~lfG~~~~~~G~i~l~G~~v~~~sp~~Ai~~G 335 (500)
T COG1129 263 VLEVRNLSGG-------GKVRDVSFTVRAGEILGIAGLVGAGRTELARALFGARPASSGEILLDGKPVRIRSPRDAIKAG 335 (500)
T ss_pred EEEEecCCCC-------CceeCceeEEeCCcEEEEeccccCCHHHHHHHHhCCCcCCCceEEECCEEccCCCHHHHHHcC
Confidence 4566666521 1488999999999999999999999999999999999999999999995
Q ss_pred EEEEecCC---CCc-cccHHHHHhcCC--cccHH-HHHHHHHHhcchhHHhcCCCCCccccCCCCCCCCHHHHHHHHHHH
Q psy1503 154 VSYASQEP---WIF-AATIRQNILFGL--PYLRR-RYADVIRVCALQDDFDSLPNGDFTVVGERGASLSGGQKARINLAR 226 (265)
Q Consensus 154 i~~v~Q~~---~l~-~~ti~eni~~~~--~~~~~-~~~~~~~~~~l~~~i~~l~~g~~t~vg~~g~~LSgGqrqRialAR 226 (265)
|+|||.|- -++ ..+|++||.+.. .+... .+....+.......+..+.-.- .-......+||||.+|++.|||
T Consensus 336 i~~v~EDRk~~Gl~l~~sI~~Ni~l~~l~~~~~~~~i~~~~e~~~~~~~~~~l~Ik~-~s~~~~v~~LSGGNQQKVvlar 414 (500)
T COG1129 336 IAYVPEDRKSEGLVLDMSIAENITLASLRRFSRRGLIDRRKERALAERYIRRLRIKT-PSPEQPIGTLSGGNQQKVVLAR 414 (500)
T ss_pred CEeCCcccccCcCcCCCcHHHheehHhhhhhccccccChHHHHHHHHHHHHhcCccc-CCccchhhcCCchhhhhHHHHH
Confidence 99999874 355 569999998761 10000 1111111111222233221100 0122455789999999999999
Q ss_pred HHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHHh
Q psy1503 227 AVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGCL 261 (265)
Q Consensus 227 al~~~~~illLDEp~s~LD~~~~~~i~~~~i~~~l 261 (265)
.|+.+|+|+||||||.|+|.-+..+|++ .|..+-
T Consensus 415 wL~~~p~vLilDEPTRGIDVGAK~eIy~-li~~lA 448 (500)
T COG1129 415 WLATDPKVLILDEPTRGIDVGAKAEIYR-LIRELA 448 (500)
T ss_pred HHhcCCCEEEECCCCcCcccchHHHHHH-HHHHHH
Confidence 9999999999999999999999999977 444443
No 385
>KOG0927|consensus
Probab=99.86 E-value=2.1e-21 Score=183.01 Aligned_cols=159 Identities=20% Similarity=0.271 Sum_probs=104.5
Q ss_pred CcEEEEeEEEEeCCCCCCcceeeceEEEcCCcEEEEEcCCCChHHHHHHHHhcCcCCCccEEEEcCeEEEEecCCCCccc
Q psy1503 87 GHVSLDNVTAQWSLQNADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSLGGTVSYASQEPWIFAA 166 (265)
Q Consensus 87 ~~i~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g~i~~v~Q~~~l~~~ 166 (265)
..+.++|++++|.+ .+.++|+.|++.+|+.++|+|+|||||||+|++|.|-..|..-.+.+ ....++-.--..
T Consensus 74 ~dvk~~sls~s~~g---~~l~kd~~~El~~g~rygLiG~nG~Gkst~L~~i~~~e~P~p~~~d~----y~ls~e~~ps~~ 146 (614)
T KOG0927|consen 74 RDVKIESLSLSFHG---VELIKDVTLELNRGRRYGLIGPNGSGKSTFLRAIAGREVPIPEHIDF----YLLSREIEPSEK 146 (614)
T ss_pred ccceeeeeeeccCC---ceeeeeeeEEecCCceEEEEcCCCCcHhHHHHHHhcCCCCCCcccch----hhhcccCCCchH
Confidence 46899999999963 56899999999999999999999999999999999999887665532 233333211112
Q ss_pred -cHHHHHhcCCc------ccHHHHHHHHH---------------Hhcchh---HH-hcC-CCCCc-cccCCCCCCCCHHH
Q psy1503 167 -TIRQNILFGLP------YLRRRYADVIR---------------VCALQD---DF-DSL-PNGDF-TVVGERGASLSGGQ 218 (265)
Q Consensus 167 -ti~eni~~~~~------~~~~~~~~~~~---------------~~~l~~---~i-~~l-~~g~~-t~vg~~g~~LSgGq 218 (265)
++..-+..... +..+++.+.++ ..+.+. .+ ..+ ..|.. ........+|||||
T Consensus 147 ~av~~v~~~~~~e~~rle~~~E~l~~~~d~~~~~~l~~~~~r~~~~d~~~~~~k~~~il~glgf~~~m~~k~~~~~SgGw 226 (614)
T KOG0927|consen 147 QAVQAVVMETDHERKRLEYLAEDLAQACDDKEKDELDELYERLDEMDNDTFEAKAAKILHGLGFLSEMQDKKVKDLSGGW 226 (614)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHhhccchhhhHHHHHHHHHHhhCchhHHHHHHHHHHhcCCCHhHHHHHhhccCchH
Confidence 22222212110 00011111100 000000 00 000 01111 12334567899999
Q ss_pred HHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHH
Q psy1503 219 KARINLARAVYKNADIYLLDDPLSAVDMHVGKHL 252 (265)
Q Consensus 219 rqRialARal~~~~~illLDEp~s~LD~~~~~~i 252 (265)
|.|++|||||+.+|++|+|||||++||..+...+
T Consensus 227 rmR~aLAr~Lf~kP~LLLLDEPtnhLDleA~~wL 260 (614)
T KOG0927|consen 227 RMRAALARALFQKPDLLLLDEPTNHLDLEAIVWL 260 (614)
T ss_pred HHHHHHHHHHhcCCCEEEecCCccCCCHHHHHHH
Confidence 9999999999999999999999999999988766
No 386
>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.85 E-value=2.7e-22 Score=173.37 Aligned_cols=158 Identities=15% Similarity=0.189 Sum_probs=100.8
Q ss_pred cEEEEeEEEEeCCCCCCcceeeceEEEcCCcEEEEEcCCCChHHHHHHHHhcCcCCCccEEEEcCeEEEEecCCCCccc-
Q psy1503 88 HVSLDNVTAQWSLQNADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSLGGTVSYASQEPWIFAA- 166 (265)
Q Consensus 88 ~i~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g~i~~v~Q~~~l~~~- 166 (265)
.++++|.. +|. ...+++++++ ++++|+|||||||||++++|...+-....... ..++++++|+..+++.
T Consensus 5 ~l~l~nfk-~~~---~~~~l~~~~~-----~i~~ivGpNGaGKSTll~~i~~~~G~~~~~~~-~~~i~~~~~~~~~~~~~ 74 (212)
T cd03274 5 KLVLENFK-SYA---GEQVIGPFHK-----SFSAIVGPNGSGKSNVIDSMLFVFGFRASKMR-QKKLSDLIHNSAGHPNL 74 (212)
T ss_pred EEEEECcc-cCC---CCeeeccCCC-----CeEEEECCCCCCHHHHHHHHHHHhccCHHHhh-hhhHHHHhcCCCCCCCC
Confidence 46777765 564 3457888887 89999999999999999999732111111111 1358899998877653
Q ss_pred cHHHHHhcCCcc-cHHHHH--HHH-H--H----hcchhHHhcCCCCCccccCCCCCCCCHHHHHHHHHHHHHcc----CC
Q psy1503 167 TIRQNILFGLPY-LRRRYA--DVI-R--V----CALQDDFDSLPNGDFTVVGERGASLSGGQKARINLARAVYK----NA 232 (265)
Q Consensus 167 ti~eni~~~~~~-~~~~~~--~~~-~--~----~~l~~~i~~l~~g~~t~vg~~g~~LSgGqrqRialARal~~----~~ 232 (265)
|++++..+.... ..+.++ ... + . .+....+..+|+..++ +...||+|||||++||||++. +|
T Consensus 75 ~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~v~~~~~~~~~~L~~~~~~----~~~~lS~G~~~r~~la~al~~~~~~~p 150 (212)
T cd03274 75 DSCSVEVHFQEIIDKPLLKSKGIDLDHNRFLILQGEVEQIAQMPKKSWK----NISNLSGGEKTLSSLALVFALHHYKPT 150 (212)
T ss_pred ceEEEEEEEEeCCCHHHHHHCCcCCCCCceEEcCCcEEEeecccccccc----chhhcCHHHHHHHHHHHHHHhcccCCC
Confidence 777765543211 000000 000 0 0 0001122334544433 356899999999999999963 58
Q ss_pred CEEEEeCCCCCcCHHHHHHHHHHHHHHH
Q psy1503 233 DIYLLDDPLSAVDMHVGKHLFEDCISGC 260 (265)
Q Consensus 233 ~illLDEp~s~LD~~~~~~i~~~~i~~~ 260 (265)
++++|||||++||+.+...+.+ .+..+
T Consensus 151 ~ililDEPt~gLD~~~~~~l~~-~l~~~ 177 (212)
T cd03274 151 PLYVMDEIDAALDFRNVSIVAN-YIKER 177 (212)
T ss_pred CEEEEcCCCcCCCHHHHHHHHH-HHHHH
Confidence 9999999999999999988755 44433
No 387
>cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.84 E-value=2.5e-21 Score=170.84 Aligned_cols=142 Identities=22% Similarity=0.277 Sum_probs=96.0
Q ss_pred cEEEEEcCCCChHHHHHHHHhcCcCCCccEEEEcC------------------e--EEEEecCCC--CccccHHHHHh-c
Q psy1503 118 QLACIIGAIGAGKTSLLHIILNELRISSGKVSLGG------------------T--VSYASQEPW--IFAATIRQNIL-F 174 (265)
Q Consensus 118 ~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g------------------~--i~~v~Q~~~--l~~~ti~eni~-~ 174 (265)
.+++|+||||||||||+.+|.+...+..|+++..+ . +.|..|++. ++..++++... +
T Consensus 23 ~~~~i~G~NGsGKStll~ai~~~l~~~~~~~r~~~~~~~i~~~~~~~~~~~~~~v~~~f~~~~~~~~~~~~~~~~~~~~~ 102 (247)
T cd03275 23 RFTCIIGPNGSGKSNLMDAISFVLGEKSSHLRSKNLKDLIYRARVGKPDSNSAYVTAVYEDDDGEEKTFRRIITGGSSSY 102 (247)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCCCcccccccchhhhcccCccccCCCceEEEEEEEEcCCCcEEEEEEEEECCceEE
Confidence 39999999999999999999998887766664321 1 334344322 22333333211 1
Q ss_pred ---CCcccHHHHHHHHHHhcchhHHhc--CCCCCccccCC---------CCCCCCHHHHHHHHHHHHHcc----CCCEEE
Q psy1503 175 ---GLPYLRRRYADVIRVCALQDDFDS--LPNGDFTVVGE---------RGASLSGGQKARINLARAVYK----NADIYL 236 (265)
Q Consensus 175 ---~~~~~~~~~~~~~~~~~l~~~i~~--l~~g~~t~vg~---------~g~~LSgGqrqRialARal~~----~~~ill 236 (265)
+.....+.+.+.++.+++..+... .++|.-+.+.+ ...+||+|||||++||||++. +|+++|
T Consensus 103 ~ingk~~s~~~~~~~l~~~gi~~~~~~~~i~Qg~v~~i~~~~p~~~~~~~~~~LS~G~k~rl~la~al~~~~~~~p~~ll 182 (247)
T cd03275 103 RINGKVVSLKEYNEELEKINILVKARNFLVFQGDVESIASKNPPGKRFRDMDNLSGGEKTMAALALLFAIHSYQPAPFFV 182 (247)
T ss_pred EECCEEecHHHHHHHHHHhCCCCCCCeEEEECCchhhhhhccCcchhhhhHHHcCHHHHHHHHHHHHHHHhccCCCCEEE
Confidence 222345667788888887543221 23444333322 237899999999999999976 489999
Q ss_pred EeCCCCCcCHHHHHHHHHHHHHHH
Q psy1503 237 LDDPLSAVDMHVGKHLFEDCISGC 260 (265)
Q Consensus 237 LDEp~s~LD~~~~~~i~~~~i~~~ 260 (265)
|||||++||......+.+ .+..+
T Consensus 183 lDEPt~~LD~~~~~~l~~-~i~~~ 205 (247)
T cd03275 183 LDEVDAALDNTNVGKVAS-YIREQ 205 (247)
T ss_pred EecccccCCHHHHHHHHH-HHHHh
Confidence 999999999999988865 44444
No 388
>COG4138 BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism]
Probab=99.83 E-value=4e-21 Score=158.96 Aligned_cols=155 Identities=26% Similarity=0.413 Sum_probs=116.2
Q ss_pred cEEEEeEEEEeCCCCCCcceeeceEEEcCCcEEEEEcCCCChHHHHHHHHhcCcCCCccEEEEcCe-------------E
Q psy1503 88 HVSLDNVTAQWSLQNADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSLGGT-------------V 154 (265)
Q Consensus 88 ~i~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g~-------------i 154 (265)
.+.++|++.+ .-|-.+|.++..|+++-+|||||||||||+..++|++ |.+|+|.++|. -
T Consensus 3 l~qln~v~~~-------tRL~plS~qv~aGe~~HliGPNGaGKSTLLA~lAGm~-~~sGsi~~~G~~l~~~~~~eLArhR 74 (248)
T COG4138 3 LMQLNDVAES-------TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMT-SGSGSIQFAGQPLEAWSATELARHR 74 (248)
T ss_pred eeeecccccc-------ccccccccccccceEEEEECCCCccHHHHHHHHhCCC-CCCceEEECCcchhHHhHhHHHHHH
Confidence 3567777643 2377899999999999999999999999999999976 67999999994 5
Q ss_pred EEEecCC-CCccccHHHHHhcCCccc--HHHHHHHHHHhcchhHHhcCCCCCccccCCCCCCCCHHHHHHHHHHHHHcc-
Q psy1503 155 SYASQEP-WIFAATIRQNILFGLPYL--RRRYADVIRVCALQDDFDSLPNGDFTVVGERGASLSGGQKARINLARAVYK- 230 (265)
Q Consensus 155 ~~v~Q~~-~l~~~ti~eni~~~~~~~--~~~~~~~~~~~~l~~~i~~l~~g~~t~vg~~g~~LSgGqrqRialARal~~- 230 (265)
+|..|+. ..|...|...+.+..+.. ...+.++++..++.+ .++.-...||||+.|||-||-.+++
T Consensus 75 AYLsQqq~p~f~mpV~~YL~L~qP~~~~a~~i~~i~~~L~l~D-----------KL~Rs~~qLSGGEWQRVRLAav~LQv 143 (248)
T COG4138 75 AYLSQQQTPPFAMPVWHYLTLHQPDKTRTELLNDVAGALALDD-----------KLGRSTNQLSGGEWQRVRLAAVVLQI 143 (248)
T ss_pred HHHhhccCCcchhhhhhhhhhcCchHHHHHHHHHHHhhhcccc-----------hhhhhhhhcCcccceeeEEeEEEEEe
Confidence 7888764 467788888888766542 122333444433433 2344557899999999999988765
Q ss_pred ------CCCEEEEeCCCCCcCHHHHHHHHHHHHHHHhh
Q psy1503 231 ------NADIYLLDDPLSAVDMHVGKHLFEDCISGCLT 262 (265)
Q Consensus 231 ------~~~illLDEp~s~LD~~~~~~i~~~~i~~~l~ 262 (265)
..+++|+|||.++||..-+..+ ++.+..+.+
T Consensus 144 ~Pd~NP~~~LLllDEP~~~LDvAQ~~aL-drll~~~c~ 180 (248)
T COG4138 144 TPDANPAGQLLLLDEPMNSLDVAQQSAL-DRLLSALCQ 180 (248)
T ss_pred cCCCCccceeEEecCCCcchhHHHHHHH-HHHHHHHHh
Confidence 3479999999999999977655 556655443
No 389
>KOG0062|consensus
Probab=99.82 E-value=3.1e-20 Score=174.23 Aligned_cols=156 Identities=20% Similarity=0.254 Sum_probs=126.6
Q ss_pred CCcEEEEeEEEEeCCCCCCcceeeceEEEcCCcEEEEEcCCCChHHHHHHHHhcCcCCCccEEEEcC--eEEEEecCCCC
Q psy1503 86 KGHVSLDNVTAQWSLQNADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSLGG--TVSYASQEPWI 163 (265)
Q Consensus 86 ~~~i~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g--~i~~v~Q~~~l 163 (265)
.+.+++.+|+|.|+... .+.+.++++.++--+.+++||+||+||||+++++.+...|..|.+.+.+ +++|..|...=
T Consensus 360 ~p~l~i~~V~f~y~p~~-y~~~~~~~~d~e~~sRi~~vg~ng~gkst~lKi~~~~l~~~rgi~~~~~r~ri~~f~Qhhvd 438 (582)
T KOG0062|consen 360 PPNLRISYVAFEYTPSE-YQWRKQLGLDRESDSRISRVGENGDGKSTLLKILKGDLTPTRGIVGRHPRLRIKYFAQHHVD 438 (582)
T ss_pred CCeeEEEeeeccCCCcc-hhhhhccCCccchhhhhheeccCchhHHHHHHHHhccCCcccceeeecccceecchhHhhhh
Confidence 35799999999997542 2689999999999999999999999999999999999999999998887 49999997643
Q ss_pred c-cccH--HHHHhc-CCcccHHHHHHHHHHhcchhHHhcCCCCCccccCCCCCCCCHHHHHHHHHHHHHccCCCEEEEeC
Q psy1503 164 F-AATI--RQNILF-GLPYLRRRYADVIRVCALQDDFDSLPNGDFTVVGERGASLSGGQKARINLARAVYKNADIYLLDD 239 (265)
Q Consensus 164 ~-~~ti--~eni~~-~~~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~vg~~g~~LSgGqrqRialARal~~~~~illLDE 239 (265)
+ +..+ .|-..- .....+++|++.+...++..++...+ ...||||||-||++|-+.+.+|.+|+|||
T Consensus 439 ~l~~~v~~vd~~~~~~pG~~~ee~r~hl~~~Gl~g~la~~s----------i~~LSGGQKsrvafA~~~~~~PhlLVLDE 508 (582)
T KOG0062|consen 439 FLDKNVNAVDFMEKSFPGKTEEEIRRHLGSFGLSGELALQS----------IASLSGGQKSRVAFAACTWNNPHLLVLDE 508 (582)
T ss_pred HHHHHhHHHHHHHHhCCCCCHHHHHHHHHhcCCCchhhhcc----------ccccCCcchhHHHHHHHhcCCCcEEEecC
Confidence 3 3333 222211 11124677888888888877765433 35799999999999999999999999999
Q ss_pred CCCCcCHHHHHHH
Q psy1503 240 PLSAVDMHVGKHL 252 (265)
Q Consensus 240 p~s~LD~~~~~~i 252 (265)
||++||.++-..+
T Consensus 509 PTNhLD~dsl~AL 521 (582)
T KOG0062|consen 509 PTNHLDRDSLGAL 521 (582)
T ss_pred CCccccHHHHHHH
Confidence 9999999998776
No 390
>cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.82 E-value=1.2e-19 Score=155.39 Aligned_cols=131 Identities=18% Similarity=0.186 Sum_probs=86.3
Q ss_pred eeeceEEEcCCcEEEEEcCCCChHHHHHHHHhcCcCCCc-----cE----EEEcC----eEEEEecCCCCccccHHHHHh
Q psy1503 107 LNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISS-----GK----VSLGG----TVSYASQEPWIFAATIRQNIL 173 (265)
Q Consensus 107 l~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~-----G~----i~~~g----~i~~v~Q~~~l~~~ti~eni~ 173 (265)
++++++++.+| +.+|+||||||||||+.+|.-.+.... |. +.-.| .+.+.+|+.-++. |-
T Consensus 12 ~~~~~l~f~~g-l~~i~G~NGsGKStll~ai~~~l~~~~~~~~r~~~~~~~i~~~~~~~~i~~~~~~~~~~~-----~~- 84 (198)
T cd03276 12 HRHLQIEFGPR-VNFIVGNNGSGKSAILTALTIGLGGKASDTNRGSSLKDLIKDGESSAKITVTLKNQGLDA-----NP- 84 (198)
T ss_pred eeeeEEecCCC-eEEEECCCCCcHHHHHHHHHHHhcCCcccccccccHHHHhhCCCCeEEEEEEEEcCCccC-----Cc-
Confidence 46677888887 889999999999999999864332221 21 00011 3677777655444 20
Q ss_pred cCCcccHHHHHHHHHHhcchhHHhcCCCCCccccCCCCCCCCHHHHHHHHHHHHH----ccCCCEEEEeCCCCCcCHHHH
Q psy1503 174 FGLPYLRRRYADVIRVCALQDDFDSLPNGDFTVVGERGASLSGGQKARINLARAV----YKNADIYLLDDPLSAVDMHVG 249 (265)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~vg~~g~~LSgGqrqRialARal----~~~~~illLDEp~s~LD~~~~ 249 (265)
..........++ +.. . ....+...+||+|||||++||||+ +.+|+++||||||++||....
T Consensus 85 -~~~~~~~~~~~~---------l~~-~----~~~~~~~~~lS~G~k~r~~ia~al~~~~~~~p~illlDEP~~glD~~~~ 149 (198)
T cd03276 85 -LCVLSQDMARSF---------LTS-N----KAAVRDVKTLSGGERSFSTVCLLLSLWEVMESPFRCLDEFDVFMDMVNR 149 (198)
T ss_pred -CCHHHHHHHHHH---------hcc-c----cccCCcccccChhHHHHHHHHHHHHHhcccCCCEEEecCcccccCHHHH
Confidence 000011122222 221 1 123456679999999999999999 689999999999999999998
Q ss_pred HHHHHHHHHHH
Q psy1503 250 KHLFEDCISGC 260 (265)
Q Consensus 250 ~~i~~~~i~~~ 260 (265)
..+.+ .+...
T Consensus 150 ~~~~~-~l~~~ 159 (198)
T cd03276 150 KISTD-LLVKE 159 (198)
T ss_pred HHHHH-HHHHH
Confidence 88766 44444
No 391
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=99.80 E-value=3e-19 Score=189.56 Aligned_cols=53 Identities=32% Similarity=0.526 Sum_probs=46.6
Q ss_pred cCCCCCCCCHHHHHHHHHHHHHc---cCCCEEEEeCCCCCcCHHHHHHHHHHHHHHH
Q psy1503 207 VGERGASLSGGQKARINLARAVY---KNADIYLLDDPLSAVDMHVGKHLFEDCISGC 260 (265)
Q Consensus 207 vg~~g~~LSgGqrqRialARal~---~~~~illLDEp~s~LD~~~~~~i~~~~i~~~ 260 (265)
.++...+||||||||++|||||+ .+|+++||||||++||....+.+++ .+..+
T Consensus 803 l~q~~~tLSGGE~QRV~LAraL~~~~~~P~LLILDEPTsGLD~~~~~~Ll~-lL~~L 858 (1809)
T PRK00635 803 LGRPLSSLSGGEIQRLKLAYELLAPSKKPTLYVLDEPTTGLHTHDIKALIY-VLQSL 858 (1809)
T ss_pred hcCccccCCHHHHHHHHHHHHHhhcCCCCCEEEEeCCCCCCCHHHHHHHHH-HHHHH
Confidence 56778899999999999999997 6999999999999999999998865 44444
No 392
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=99.78 E-value=1e-18 Score=178.19 Aligned_cols=54 Identities=28% Similarity=0.613 Sum_probs=47.9
Q ss_pred cCCCCCCCCHHHHHHHHHHHHHccCC---CEEEEeCCCCCcCHHHHHHHHHHHHHHHh
Q psy1503 207 VGERGASLSGGQKARINLARAVYKNA---DIYLLDDPLSAVDMHVGKHLFEDCISGCL 261 (265)
Q Consensus 207 vg~~g~~LSgGqrqRialARal~~~~---~illLDEp~s~LD~~~~~~i~~~~i~~~l 261 (265)
.+....+||||||||++|||+|+++| +++||||||++||......+++ .+..+.
T Consensus 824 l~~~~~tLSgGEkQRl~LAraL~~~p~~~~llILDEPtsGLD~~~~~~L~~-~L~~l~ 880 (943)
T PRK00349 824 LGQPATTLSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLHFEDIRKLLE-VLHRLV 880 (943)
T ss_pred ccCCcccCCHHHHHHHHHHHHHhcCCCCCeEEEEECCCCCCCHHHHHHHHH-HHHHHH
Confidence 57788899999999999999999999 9999999999999999988865 455543
No 393
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=99.78 E-value=1.2e-17 Score=156.64 Aligned_cols=165 Identities=19% Similarity=0.364 Sum_probs=128.2
Q ss_pred CCcEEEEeEEEEeCCCCCCcceeeceEEEcCCcEEEEEcCCCChHHHHHHHHhcCcCCCccEEEEcCe------------
Q psy1503 86 KGHVSLDNVTAQWSLQNADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSLGGT------------ 153 (265)
Q Consensus 86 ~~~i~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g~------------ 153 (265)
+..+++++++..-. .+.+.+++|||++++||+++|.|-.|-|-+-|+.+|+|+.+|.+|+|.++|.
T Consensus 255 ~~vL~V~~L~v~~~--~~~~~v~~vs~~Vr~GEIvGIAGV~GNGQ~eL~eaisGlr~~~~G~I~l~G~~v~~~~~~~~~r 332 (501)
T COG3845 255 EVVLEVEDLSVKDR--RGVTAVKDVSFEVRAGEIVGIAGVAGNGQSELVEAISGLRKPASGRILLNGKDVLGRLSPRERR 332 (501)
T ss_pred CeEEEEeeeEeecC--CCCceeeeeeeEEecCcEEEEEecCCCCHHHHHHHHhCCCccCCceEEECCEeccccCCHHHHH
Confidence 45789999997542 2346799999999999999999999999999999999999999999999983
Q ss_pred ---EEEEecCCC----CccccHHHHHhcCCcc----------cHHHHHHHHHHhcchhHHhcCCCCCccccCCCCCCCCH
Q psy1503 154 ---VSYASQEPW----IFAATIRQNILFGLPY----------LRRRYADVIRVCALQDDFDSLPNGDFTVVGERGASLSG 216 (265)
Q Consensus 154 ---i~~v~Q~~~----l~~~ti~eni~~~~~~----------~~~~~~~~~~~~~l~~~i~~l~~g~~t~vg~~g~~LSg 216 (265)
++|||.|.. ....|+.||+.++.-. +...+.+.. ..+-+.++--+.+.. .+..+|||
T Consensus 333 ~~G~~~VPedR~~~Glv~~~sl~eN~vL~~~~~~~~~~~g~l~~~~i~~~a--~~li~~fdVr~~~~~----~~a~~LSG 406 (501)
T COG3845 333 RLGLAYVPEDRHGHGLVLDLSLAENLVLGRHDKKPFSRGGFLDRRAIRKFA--RELIEEFDVRAPSPD----APARSLSG 406 (501)
T ss_pred hcCCccCChhhccCccccCccHHHHhhhhhccccccccccccCHHHHHHHH--HHHHHHcCccCCCCC----cchhhcCC
Confidence 799999874 3457999999875421 111222111 112222222233322 34578999
Q ss_pred HHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHH
Q psy1503 217 GQKARINLARAVYKNADIYLLDDPLSAVDMHVGKHLFEDCIS 258 (265)
Q Consensus 217 GqrqRialARal~~~~~illLDEp~s~LD~~~~~~i~~~~i~ 258 (265)
|++||+-+||-|.++|+++|...||.|||....+.|.++.+.
T Consensus 407 GNqQK~IlaREl~~~p~lLI~~qPTrGLDvgA~~~I~~~l~e 448 (501)
T COG3845 407 GNQQKLILARELARRPDLLIAAQPTRGLDVGAIEFIHERLLE 448 (501)
T ss_pred cceehhhhhhhhccCCCEEEEcCCCccccHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999877663
No 394
>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms. SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.
Probab=99.76 E-value=1.6e-18 Score=145.99 Aligned_cols=126 Identities=20% Similarity=0.284 Sum_probs=78.7
Q ss_pred ceEEEcCCcEEEEEcCCCChHHHHHHHHhcCcCCCccEEEEcCeEEEEecCCCCccccHHHHHhcCCcccHHHHHHHHHH
Q psy1503 110 VSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSLGGTVSYASQEPWIFAATIRQNILFGLPYLRRRYADVIRV 189 (265)
Q Consensus 110 isl~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g~i~~v~Q~~~l~~~ti~eni~~~~~~~~~~~~~~~~~ 189 (265)
..+...++.+.+|+||||||||+++.+|.=..--.+-....+. +..+ +.+.+..+... .++.
T Consensus 15 ~~~~~~~~~~~~i~G~NGsGKSnil~Ai~~~~~~~~~~~~~~~-------~~~~----~~~~~~~~~~~--~~v~----- 76 (178)
T cd03239 15 ETVVGGSNSFNAIVGPNGSGKSNIVDAICFVLGGKAAKLRRGS-------LLFL----AGGGVKAGINS--ASVE----- 76 (178)
T ss_pred CEEecCCCceEEEECCCCCCHHHHHHHHHHHcCcccccccCcc-------hhhh----cccccCCCCce--EEEE-----
Confidence 3344434349999999999999999998442211111000000 0000 01111111110 0000
Q ss_pred hcchhHHhcCCCCCccccCCCCCCCCHHHHHHHHHHHHHc----cCCCEEEEeCCCCCcCHHHHHHHHHHHHHHH
Q psy1503 190 CALQDDFDSLPNGDFTVVGERGASLSGGQKARINLARAVY----KNADIYLLDDPLSAVDMHVGKHLFEDCISGC 260 (265)
Q Consensus 190 ~~l~~~i~~l~~g~~t~vg~~g~~LSgGqrqRialARal~----~~~~illLDEp~s~LD~~~~~~i~~~~i~~~ 260 (265)
......+..+|+|+.|++ ||+|||||++|||+++ .+|+++|+|||+++||+.....+++ .+..+
T Consensus 77 ~~f~~~~~~~~~~~~~~~------LS~Ge~~r~~Laral~~~~~~~p~llilDEp~~~LD~~~~~~i~~-~L~~~ 144 (178)
T cd03239 77 ITFDKSYFLVLQGKVEQI------LSGGEKSLSALALIFALQEIKPSPFYVLDEIDAALDPTNRRRVSD-MIKEM 144 (178)
T ss_pred EEEECceEEecCCcCccc------CCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCCCHHHHHHHHH-HHHHH
Confidence 112223678899998877 9999999999999985 7999999999999999999988865 44444
No 395
>KOG2355|consensus
Probab=99.75 E-value=6.8e-18 Score=143.02 Aligned_cols=153 Identities=22% Similarity=0.359 Sum_probs=113.0
Q ss_pred CCcEEEEeEEEEeCCCCCCcceeeceEEEcCCcEEEEEcCCCChHHHHHHHHhcCcCCCccEEEEcCe------------
Q psy1503 86 KGHVSLDNVTAQWSLQNADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSLGGT------------ 153 (265)
Q Consensus 86 ~~~i~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g~------------ 153 (265)
+..|+++++.|+|+.. .|++-|+|++++.|...-+||.||||||||+++|.|-.-.-.|.|.+.|+
T Consensus 11 ~~aievsgl~f~y~~~--dP~~~Dfnldlp~gsRcLlVGaNGaGKtTlLKiLsGKhmv~~~~v~VlgrsaFhDt~l~~Sg 88 (291)
T KOG2355|consen 11 DFAIEVSGLQFKYKVS--DPIFFDFNLDLPAGSRCLLVGANGAGKTTLLKILSGKHMVGGGVVQVLGRSAFHDTSLESSG 88 (291)
T ss_pred cceEEEeccEEecccC--CceEEEEeeccCCCceEEEEecCCCchhhhHHHhcCcccccCCeEEEcCcCccccccccccC
Confidence 4579999999999753 48999999999999999999999999999999999988777899998874
Q ss_pred -EEEEec----------CCCCc-cccHHHHHhcCCcc-cHHHHHHHHHHhcchhHHhcCCCCCccccCCCCCCCCHHHHH
Q psy1503 154 -VSYASQ----------EPWIF-AATIRQNILFGLPY-LRRRYADVIRVCALQDDFDSLPNGDFTVVGERGASLSGGQKA 220 (265)
Q Consensus 154 -i~~v~Q----------~~~l~-~~ti~eni~~~~~~-~~~~~~~~~~~~~l~~~i~~l~~g~~t~vg~~g~~LSgGqrq 220 (265)
..|+-- +..+. ..++ +.+.||-.. +.++-++.++...+ + +.=+...+|-|||.
T Consensus 89 dl~YLGgeW~~~~~~agevplq~D~sa-e~mifgV~g~dp~Rre~LI~iLDI--d-----------l~WRmHkvSDGqrR 154 (291)
T KOG2355|consen 89 DLSYLGGEWSKTVGIAGEVPLQGDISA-EHMIFGVGGDDPERREKLIDILDI--D-----------LRWRMHKVSDGQRR 154 (291)
T ss_pred ceeEecccccccccccccccccccccH-HHHHhhccCCChhHhhhhhhheec--c-----------ceEEEeeccccchh
Confidence 333321 11122 1132 334444322 22333333333211 1 11244679999999
Q ss_pred HHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHH
Q psy1503 221 RINLARAVYKNADIYLLDDPLSAVDMHVGKHLFE 254 (265)
Q Consensus 221 RialARal~~~~~illLDEp~s~LD~~~~~~i~~ 254 (265)
||.|+..|++.-++++|||.|--||...+..+++
T Consensus 155 RVQicMGLL~PfkVLLLDEVTVDLDVlARadLLe 188 (291)
T KOG2355|consen 155 RVQICMGLLKPFKVLLLDEVTVDLDVLARADLLE 188 (291)
T ss_pred hhHHHHhcccceeEEEeeeeEeehHHHHHHHHHH
Confidence 9999999999999999999999999999888765
No 396
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.75 E-value=1.7e-17 Score=168.99 Aligned_cols=53 Identities=32% Similarity=0.614 Sum_probs=46.7
Q ss_pred cCCCCCCCCHHHHHHHHHHHHHcc---CCCEEEEeCCCCCcCHHHHHHHHHHHHHHH
Q psy1503 207 VGERGASLSGGQKARINLARAVYK---NADIYLLDDPLSAVDMHVGKHLFEDCISGC 260 (265)
Q Consensus 207 vg~~g~~LSgGqrqRialARal~~---~~~illLDEp~s~LD~~~~~~i~~~~i~~~ 260 (265)
+++...+|||||+||++|||+|++ +|++|||||||++||+.....+++ .+..+
T Consensus 822 l~~~~~tLSgGe~QRl~LA~aL~~~~~~p~llILDEPtsgLD~~~~~~L~~-~L~~l 877 (924)
T TIGR00630 822 LGQPATTLSGGEAQRIKLAKELSKRSTGRTLYILDEPTTGLHFDDIKKLLE-VLQRL 877 (924)
T ss_pred hcCccccCCHHHHHHHHHHHHHhhcCCCCCEEEEECCCCCCCHHHHHHHHH-HHHHH
Confidence 577889999999999999999997 599999999999999999988865 44444
No 397
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=99.74 E-value=3.4e-18 Score=158.88 Aligned_cols=154 Identities=23% Similarity=0.419 Sum_probs=108.7
Q ss_pred eEEEEeCCCCCCcceeeceEEEcCCcEEEEEcCCCChHHHHHHHHhcCcCCCccEEEE-----------cC---------
Q psy1503 93 NVTAQWSLQNADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSL-----------GG--------- 152 (265)
Q Consensus 93 ~~~~~~~~~~~~~~l~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~-----------~g--------- 152 (265)
++.++|+.+ ...|..+. ..++|++++|+||||-||||-+++|+|++.|.=|.-.- .|
T Consensus 79 e~vHRYg~N--gFkL~~LP-~pr~G~V~GilG~NGiGKsTalkILaGel~PNLG~~~~pp~wdeVi~~FrGtELq~YF~~ 155 (591)
T COG1245 79 EVVHRYGVN--GFKLYRLP-TPRPGKVVGILGPNGIGKSTALKILAGELKPNLGRYEDPPSWDEVIKRFRGTELQNYFKK 155 (591)
T ss_pred cceeeccCC--ceEEecCC-CCCCCcEEEEEcCCCccHHHHHHHHhCccccCCCCCCCCCCHHHHHHHhhhhHHHHHHHH
Confidence 457788643 23444433 25799999999999999999999999999998775421 11
Q ss_pred ------eE----EEEecCCCCccccHHHHHhcCCcccHHHHHHHHHHhcchhHHhcCCCCCccccCCCCCCCCHHHHHHH
Q psy1503 153 ------TV----SYASQEPWIFAATIRQNILFGLPYLRRRYADVIRVCALQDDFDSLPNGDFTVVGERGASLSGGQKARI 222 (265)
Q Consensus 153 ------~i----~~v~Q~~~l~~~ti~eni~~~~~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~vg~~g~~LSgGqrqRi 222 (265)
++ -||.--|-.+.++++|-+.--.+ .....++++..+|.+.++ ....+||||+-||+
T Consensus 156 l~~g~~r~v~K~QYVd~iPk~~KG~v~elLk~~de--~g~~devve~l~L~nvl~-----------r~v~~LSGGELQr~ 222 (591)
T COG1245 156 LYEGELRAVHKPQYVDLIPKVVKGKVGELLKKVDE--RGKFDEVVERLGLENVLD-----------RDVSELSGGELQRV 222 (591)
T ss_pred HHcCCcceecchHHHHHHHHHhcchHHHHHHhhhh--cCcHHHHHHHhcchhhhh-----------hhhhhcCchHHHHH
Confidence 02 23333355566777776543211 123455666666655443 45578999999999
Q ss_pred HHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHHhhc
Q psy1503 223 NLARAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGCLTS 263 (265)
Q Consensus 223 alARal~~~~~illLDEp~s~LD~~~~~~i~~~~i~~~l~~ 263 (265)
|||.|+.+++|+|++|||+|-||...+-.. .+.|+.+.++
T Consensus 223 aIaa~l~rdADvY~FDEpsSyLDi~qRl~~-ar~Irel~~~ 262 (591)
T COG1245 223 AIAAALLRDADVYFFDEPSSYLDIRQRLNA-ARVIRELAED 262 (591)
T ss_pred HHHHHHhccCCEEEEcCCcccccHHHHHHH-HHHHHHHhcc
Confidence 999999999999999999999999876655 5566777663
No 398
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=99.74 E-value=9e-18 Score=143.65 Aligned_cols=113 Identities=16% Similarity=0.095 Sum_probs=81.2
Q ss_pred eeeceEEEcCCc-EEEEEcCCCChHHHHHHHHh--------cCcCCCccEEEEcCeEEEEecCCCCccccHHHHHhcCCc
Q psy1503 107 LNAVSITFKPKQ-LACIIGAIGAGKTSLLHIIL--------NELRISSGKVSLGGTVSYASQEPWIFAATIRQNILFGLP 177 (265)
Q Consensus 107 l~~isl~i~~G~-~~~ivG~~GsGKSTLl~~l~--------g~~~~~~G~i~~~g~i~~v~Q~~~l~~~ti~eni~~~~~ 177 (265)
.-++||++.+|+ +++|+||||||||||+++|. |.+.|....+. ++|+.|... .+
T Consensus 17 ~~~~~~~i~~~~~~~~ltG~Ng~GKStll~~i~~~~~~~~~G~~vp~~~~~~----~~~~~~~~~----------~l--- 79 (200)
T cd03280 17 VVPLDIQLGENKRVLVITGPNAGGKTVTLKTLGLLTLMAQSGLPIPAAEGSS----LPVFENIFA----------DI--- 79 (200)
T ss_pred eEcceEEECCCceEEEEECCCCCChHHHHHHHHHHHHHHHcCCCcccccccc----CcCccEEEE----------ec---
Confidence 457899999995 79999999999999999998 55544332221 233333210 00
Q ss_pred ccHHHHHHHHHHhcchhHHhcCCCCCccccCCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHH
Q psy1503 178 YLRRRYADVIRVCALQDDFDSLPNGDFTVVGERGASLSGGQKARINLARAVYKNADIYLLDDPLSAVDMHVGKHLFEDCI 257 (265)
Q Consensus 178 ~~~~~~~~~~~~~~l~~~i~~l~~g~~t~vg~~g~~LSgGqrqRialARal~~~~~illLDEp~s~LD~~~~~~i~~~~i 257 (265)
+.. ..+.++...+|+|+||+..+++++ .+|+++++|||++++|+.....+....+
T Consensus 80 -------------g~~-----------~~l~~~~s~fs~g~~~~~~i~~~~-~~p~llllDEp~~glD~~~~~~i~~~~l 134 (200)
T cd03280 80 -------------GDE-----------QSIEQSLSTFSSHMKNIARILQHA-DPDSLVLLDELGSGTDPVEGAALAIAIL 134 (200)
T ss_pred -------------Cch-----------hhhhcCcchHHHHHHHHHHHHHhC-CCCcEEEEcCCCCCCCHHHHHHHHHHHH
Confidence 000 012233468999999999999985 8999999999999999999988876666
Q ss_pred HHHh
Q psy1503 258 SGCL 261 (265)
Q Consensus 258 ~~~l 261 (265)
..+.
T Consensus 135 ~~l~ 138 (200)
T cd03280 135 EELL 138 (200)
T ss_pred HHHH
Confidence 5543
No 399
>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]
Probab=99.71 E-value=4.1e-17 Score=150.28 Aligned_cols=142 Identities=25% Similarity=0.343 Sum_probs=108.3
Q ss_pred CcceeeceEEEcCCcEEEEEcCCCChHHHHHHHHhcC--------cCCCccEEEEcCe--EEEEecC--CCCccccHHHH
Q psy1503 104 DLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNE--------LRISSGKVSLGGT--VSYASQE--PWIFAATIRQN 171 (265)
Q Consensus 104 ~~~l~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~g~--------~~~~~G~i~~~g~--i~~v~Q~--~~l~~~ti~en 171 (265)
..+++|+||+|++|++++|+|+|||||||++++|+|. |.|++|.|.+.-. -+.+|-+ |.+-.-|+.|.
T Consensus 396 ryvlr~vNL~ikpGdvvaVvGqSGaGKttllRmi~G~~~~~~ee~y~p~sg~v~vp~nt~~a~iPge~Ep~f~~~tileh 475 (593)
T COG2401 396 RYVLRNLNLEIKPGDVVAVVGQSGAGKTTLLRMILGAQKGRGEEKYRPDSGKVEVPKNTVSALIPGEYEPEFGEVTILEH 475 (593)
T ss_pred eeeeeceeeEecCCCeEEEEecCCCCcchHHHHHHHHhhcccccccCCCCCceeccccchhhccCcccccccCchhHHHH
Confidence 4679999999999999999999999999999999985 5899999877532 3445543 33333377777
Q ss_pred HhcCCcccHHHHHHHHHHhcchhHHhcCCCCCccccCCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHH
Q psy1503 172 ILFGLPYLRRRYADVIRVCALQDDFDSLPNGDFTVVGERGASLSGGQKARINLARAVYKNADIYLLDDPLSAVDMHVGKH 251 (265)
Q Consensus 172 i~~~~~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~vg~~g~~LSgGqrqRialARal~~~~~illLDEp~s~LD~~~~~~ 251 (265)
+.-- .-|-....+++..+++.+... .-.....||-|||-|..||+++...|.+++.||-.|.||..|+.+
T Consensus 476 l~s~-tGD~~~AveILnraGlsDAvl---------yRr~f~ELStGQKeR~KLAkllaerpn~~~iDEF~AhLD~~TA~r 545 (593)
T COG2401 476 LRSK-TGDLNAAVEILNRAGLSDAVL---------YRRKFSELSTGQKERAKLAKLLAERPNVLLIDEFAAHLDELTAVR 545 (593)
T ss_pred Hhhc-cCchhHHHHHHHhhccchhhh---------hhccHhhcCcchHHHHHHHHHHhcCCCcEEhhhhhhhcCHHHHHH
Confidence 5421 112222345666777755432 224457899999999999999999999999999999999999998
Q ss_pred HHHH
Q psy1503 252 LFED 255 (265)
Q Consensus 252 i~~~ 255 (265)
+..+
T Consensus 546 VArk 549 (593)
T COG2401 546 VARK 549 (593)
T ss_pred HHHH
Confidence 8654
No 400
>cd03277 ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.69 E-value=6.6e-17 Score=139.90 Aligned_cols=142 Identities=17% Similarity=0.186 Sum_probs=81.9
Q ss_pred eeeceEEEcCCcEEEEEcCCCChHHHHHHHHhcCcCCCcc---------EEEEcC----eEEEEecC-CCCccccHHHHH
Q psy1503 107 LNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSG---------KVSLGG----TVSYASQE-PWIFAATIRQNI 172 (265)
Q Consensus 107 l~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G---------~i~~~g----~i~~v~Q~-~~l~~~ti~eni 172 (265)
++++.+++.+| +.+|+||||||||||+.+|.-.+-.... ...-.| .|-...+. ++ .=..+|+
T Consensus 14 ~~~~~i~~~~g-~n~i~G~NgsGKS~lleAi~~~l~~~~~~~~r~~~~~~~i~~g~~~~~v~~~~~~~~~---~~~~~n~ 89 (213)
T cd03277 14 YDETEFRPGPS-LNMIIGPNGSGKSSIVCAICLGLGGKPKLLGRAKKVGEFVKRGCDEGTIEIELYGNPG---NIQVDNL 89 (213)
T ss_pred cceeEEecCCC-eEEEECCCCCCHHHHHHHHHHHhcCCccccccccCHHHHhhCCCCcEEEEEEEEeCCC---ccccCCc
Confidence 34556666554 7899999999999999988544421110 000111 11111111 10 0013333
Q ss_pred hcCCcccHHHHHHHHHHhcchhHHhcCCCCCccccCCCCCCCCHHHHHHHHHHHH----HccCCCEEEEeCCCCCcCHHH
Q psy1503 173 LFGLPYLRRRYADVIRVCALQDDFDSLPNGDFTVVGERGASLSGGQKARINLARA----VYKNADIYLLDDPLSAVDMHV 248 (265)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~vg~~g~~LSgGqrqRialARa----l~~~~~illLDEp~s~LD~~~ 248 (265)
.+-. ......+..... -.+.+..++.+... -..+...||+|||||+.+|++ ++.+|+++|+||||++||+..
T Consensus 90 ~~~~--~q~~~~~~~~~~-~~e~l~~~~~~~~~-~~~~~~~LS~G~~q~~~i~~~la~~~~~~p~llllDEP~~~LD~~~ 165 (213)
T cd03277 90 CQFL--PQDRVGEFAKLS-PIELLVKFREGEQL-QELDPHHQSGGERSVSTMLYLLSLQELTRCPFRVVDEINQGMDPTN 165 (213)
T ss_pred eEEE--chHHHHHHHhCC-hHhHheeeecCCCc-cccchhhccccHHHHHHHHHHHHHHhccCCCEEEEecccccCCHHH
Confidence 3211 122222222221 11233445544432 244678999999999887755 458999999999999999999
Q ss_pred HHHHHHHH
Q psy1503 249 GKHLFEDC 256 (265)
Q Consensus 249 ~~~i~~~~ 256 (265)
...+++..
T Consensus 166 ~~~i~~~l 173 (213)
T cd03277 166 ERKVFDML 173 (213)
T ss_pred HHHHHHHH
Confidence 99886643
No 401
>KOG0065|consensus
Probab=99.67 E-value=9.3e-17 Score=164.47 Aligned_cols=153 Identities=24% Similarity=0.377 Sum_probs=118.9
Q ss_pred CcceeeceEEEcCCcEEEEEcCCCChHHHHHHHHhcCcCCC---ccEEEEcCe----------EEEEecCCCCcc-ccHH
Q psy1503 104 DLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRIS---SGKVSLGGT----------VSYASQEPWIFA-ATIR 169 (265)
Q Consensus 104 ~~~l~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~---~G~i~~~g~----------i~~v~Q~~~l~~-~ti~ 169 (265)
..+|+|++.-+++|+.+-+.||.|||||||++++.|..+-. .|+|..+|. ++|++|+...++ .|||
T Consensus 128 ~~il~~~sg~~~pg~m~lvLG~pgsG~ttllkal~g~~~~~~~~~~~isy~G~~~~e~~~~~~~aY~~e~DvH~p~lTVr 207 (1391)
T KOG0065|consen 128 IQILKDISGIIKPGEMTLVLGPPGSGKTTLLKALAGKLDNFLKSSGEITYNGHDLKEFVPKKTVAYNSEQDVHFPELTVR 207 (1391)
T ss_pred ceeecCcceeEcCCceEEEecCCCCchHHHHHHHhCCCcccccCCCceeECCCcccccccCceEEeccccccccceeEEe
Confidence 35899999999999999999999999999999999987543 468999983 899999999886 5999
Q ss_pred HHHhcCCc-------cc-HHHHHHHHHHhcchhHHhcCCCCCccccCCCC-CCCCHHHHHHHHHHHHHccCCCEEEEeCC
Q psy1503 170 QNILFGLP-------YL-RRRYADVIRVCALQDDFDSLPNGDFTVVGERG-ASLSGGQKARINLARAVYKNADIYLLDDP 240 (265)
Q Consensus 170 eni~~~~~-------~~-~~~~~~~~~~~~l~~~i~~l~~g~~t~vg~~g-~~LSgGqrqRialARal~~~~~illLDEp 240 (265)
|-+.|... ++ -+|.+.........-.+--|.+..+|.||.+. ...|||||.||++|-+++.++.++..||+
T Consensus 208 eTldFa~rck~~~~r~~~~~R~e~~~~~~d~~lkilGL~~~~dT~VGnd~~RGvSGGerKRvsi~E~~v~~~~~~~~De~ 287 (1391)
T KOG0065|consen 208 ETLDFAARCKGPGSRYDEVSRREKLAAMTDYLLKILGLDHCADTLVGNDMVRGVSGGERKRVSIGEMLVGPASILFWDEI 287 (1391)
T ss_pred ehhhHHHhccCCccccccccHHHHHHHHHHHHHHHhCchhhccceecccccccccCcccceeeeeeeeecCcceeeeecc
Confidence 99988531 22 11111110000000112234567788999654 67999999999999999999999999999
Q ss_pred CCCcCHHHHHHHHHHHH
Q psy1503 241 LSAVDMHVGKHLFEDCI 257 (265)
Q Consensus 241 ~s~LD~~~~~~i~~~~i 257 (265)
|.|||+.|.-++.. ++
T Consensus 288 t~GLDSsTal~iik-~l 303 (1391)
T KOG0065|consen 288 TRGLDSSTAFQIIK-AL 303 (1391)
T ss_pred cccccHHHHHHHHH-HH
Confidence 99999999988855 44
No 402
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=99.65 E-value=2.8e-16 Score=134.59 Aligned_cols=120 Identities=15% Similarity=0.208 Sum_probs=79.0
Q ss_pred CcceeeceEEEcCCcEEEEEcCCCChHHHHHHHHhcCcCC-CccEEEEcCeEEEEecCCCCcc-ccHHHHHhcCCcccHH
Q psy1503 104 DLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRI-SSGKVSLGGTVSYASQEPWIFA-ATIRQNILFGLPYLRR 181 (265)
Q Consensus 104 ~~~l~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~-~~G~i~~~g~i~~v~Q~~~l~~-~ti~eni~~~~~~~~~ 181 (265)
+++++|++++. |++++|+||||||||||+++|.|.... ..|. .+.. ..+++|...+|. .|+.||+.++......
T Consensus 14 ~~v~n~i~l~~--g~~~~ltGpNg~GKSTllr~i~~~~~l~~~G~-~v~a-~~~~~q~~~l~~~~~~~d~l~~~~s~~~~ 89 (199)
T cd03283 14 KRVANDIDMEK--KNGILITGSNMSGKSTFLRTIGVNVILAQAGA-PVCA-SSFELPPVKIFTSIRVSDDLRDGISYFYA 89 (199)
T ss_pred CeecceEEEcC--CcEEEEECCCCCChHHHHHHHHHHHHHHHcCC-EEec-CccCcccceEEEeccchhccccccChHHH
Confidence 45778776664 799999999999999999999885531 1232 1111 245667555664 5999999887532211
Q ss_pred HHHHHHHHhcchhHHhcCCCCCccccCCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHHh
Q psy1503 182 RYADVIRVCALQDDFDSLPNGDFTVVGERGASLSGGQKARINLARAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGCL 261 (265)
Q Consensus 182 ~~~~~~~~~~l~~~i~~l~~g~~t~vg~~g~~LSgGqrqRialARal~~~~~illLDEp~s~LD~~~~~~i~~~~i~~~l 261 (265)
+..+ +.+.++.+. ..+|+++|+|||++++|+.....+....+..+.
T Consensus 90 e~~~------~~~iL~~~~----------------------------~~~p~llllDEp~~glD~~~~~~l~~~ll~~l~ 135 (199)
T cd03283 90 ELRR------LKEIVEKAK----------------------------KGEPVLFLLDEIFKGTNSRERQAASAAVLKFLK 135 (199)
T ss_pred HHHH------HHHHHHhcc----------------------------CCCCeEEEEecccCCCCHHHHHHHHHHHHHHHH
Confidence 1111 122222211 069999999999999999998877655554443
No 403
>cd03242 ABC_RecF RecF is a recombinational DNA repair ATPase that maintains replication in the presence of DNA damage. When replication is prematurely disrupted by DNA damage, several recF pathway gene products play critical roles processing the arrested replication fork, allowing it to resume and complete its task. This CD represents the nucleotide binding domain of RecF. RecF belongs to a large superfamily of ABC transporters involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases with a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.64 E-value=2.8e-15 Score=134.11 Aligned_cols=45 Identities=27% Similarity=0.307 Sum_probs=39.9
Q ss_pred CCCCHHHHHHHHHHHHHc---------cCCCEEEEeCCCCCcCHHHHHHHHHHH
Q psy1503 212 ASLSGGQKARINLARAVY---------KNADIYLLDDPLSAVDMHVGKHLFEDC 256 (265)
Q Consensus 212 ~~LSgGqrqRialARal~---------~~~~illLDEp~s~LD~~~~~~i~~~~ 256 (265)
..+|+||||+++|||+|+ .+|+++||||||++||+.....+++..
T Consensus 182 ~~lS~Gq~~~~~la~~la~~~~~~~~~~~~~illlDEp~a~LD~~~~~~l~~~l 235 (270)
T cd03242 182 DFGSQGQQRTLALALKLAEIQLIKEVSGEYPVLLLDDVLAELDLGRQAALLDAI 235 (270)
T ss_pred HhCChHHHHHHHHHHHHHHHHHHHHhhCCCcEEEEcCcchhcCHHHHHHHHHHh
Confidence 348999999999999974 799999999999999999998886643
No 404
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=99.63 E-value=1.8e-15 Score=125.38 Aligned_cols=108 Identities=27% Similarity=0.307 Sum_probs=73.2
Q ss_pred ceEEEcCCcEEEEEcCCCChHHHHHHHHhcCcCCCccEEEEcCe--EEE-EecCCCCccccHHHHHhcCCcccHHHHHHH
Q psy1503 110 VSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSLGGT--VSY-ASQEPWIFAATIRQNILFGLPYLRRRYADV 186 (265)
Q Consensus 110 isl~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g~--i~~-v~Q~~~l~~~ti~eni~~~~~~~~~~~~~~ 186 (265)
.++.+.++.++.|+|||||||||+++++.-..-..+|.+..... .++ +++.. +.+
T Consensus 14 ~~i~~~~~~~~~i~G~NgsGKS~~l~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~----------~~~------------ 71 (162)
T cd03227 14 NDVTFGEGSLTIITGPNGSGKSTILDAIGLALGGAQSATRRRSGVKAGCIVAAVS----------AEL------------ 71 (162)
T ss_pred cEEecCCCCEEEEECCCCCCHHHHHHHHHHHHHhcchhhhccCcccCCCcceeeE----------EEE------------
Confidence 34555566799999999999999999986655555444332110 000 00000 000
Q ss_pred HHHhcchhHHhcCCCCCccccCCCCCCCCHHHHHHHHHHHHHcc----CCCEEEEeCCCCCcCHHHHHHHHHHHHHHHh
Q psy1503 187 IRVCALQDDFDSLPNGDFTVVGERGASLSGGQKARINLARAVYK----NADIYLLDDPLSAVDMHVGKHLFEDCISGCL 261 (265)
Q Consensus 187 ~~~~~l~~~i~~l~~g~~t~vg~~g~~LSgGqrqRialARal~~----~~~illLDEp~s~LD~~~~~~i~~~~i~~~l 261 (265)
+ .+. .+||+||+||++|||+|.. +|+++|+|||++++|+.....+.+. +...+
T Consensus 72 ---------i-------~~~-----~~lS~G~~~~~~la~~L~~~~~~~~~llllDEp~~gld~~~~~~l~~~-l~~~~ 128 (162)
T cd03227 72 ---------I-------FTR-----LQLSGGEKELSALALILALASLKPRPLYILDEIDRGLDPRDGQALAEA-ILEHL 128 (162)
T ss_pred ---------e-------hhe-----eeccccHHHHHHHHHHHHhcCCCCCCEEEEeCCCCCCCHHHHHHHHHH-HHHHH
Confidence 0 000 1399999999999999986 7899999999999999999888664 44443
No 405
>COG4170 SapD ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.62 E-value=7.3e-16 Score=131.26 Aligned_cols=156 Identities=19% Similarity=0.331 Sum_probs=110.5
Q ss_pred EEEEeEEEEeCCCCC-CcceeeceEEEcCCcEEEEEcCCCChHHHHHHHHhcCcCC----CccEEEEcC-----------
Q psy1503 89 VSLDNVTAQWSLQNA-DLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRI----SSGKVSLGG----------- 152 (265)
Q Consensus 89 i~~~~~~~~~~~~~~-~~~l~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~----~~G~i~~~g----------- 152 (265)
+.+.|++..+....+ ..+++++|+++..||+-++||.||||||-+.++|.|..+- +.-..+++.
T Consensus 4 LDIrnL~IE~~TsqG~vK~VD~v~ltlnEGEi~GLVGESGSGKSLiAK~Ic~v~kdnW~vTADR~Rf~~idLL~L~Pr~R 83 (330)
T COG4170 4 LDIRNLTIEFKTSQGWVKAVDRVSMTLNEGEIRGLVGESGSGKSLIAKAICGVNKDNWRVTADRMRFDDIDLLRLSPRER 83 (330)
T ss_pred ccccceEEEEecCCCceEeeeeeeeeeccceeeeeeccCCCchhHHHHHHhcccccceEEEhhhcccccchhhcCChHHh
Confidence 556777766654322 3478999999999999999999999999999999997642 122223332
Q ss_pred ------eEEEEecCCCCc--c-ccHH----HHHhcCCcc----------cHHHHHHHHHHhcch--hHHhcCCCCCcccc
Q psy1503 153 ------TVSYASQEPWIF--A-ATIR----QNILFGLPY----------LRRRYADVIRVCALQ--DDFDSLPNGDFTVV 207 (265)
Q Consensus 153 ------~i~~v~Q~~~l~--~-~ti~----eni~~~~~~----------~~~~~~~~~~~~~l~--~~i~~l~~g~~t~v 207 (265)
.|++++|+|.-. + .+|. +||-+ -.+ .+.+..+.+..+++. .||..
T Consensus 84 Rk~ig~~isMIFQeP~sCLDPS~~iG~QlIq~IP~-wTfkgrWWq~F~WrKrrAIeLLHrVGIKdHkDIM~--------- 153 (330)
T COG4170 84 RKLVGHNVSMIFQEPQSCLDPSERVGRQLIQNIPA-WTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDIMR--------- 153 (330)
T ss_pred hhhhccchhhhhcCchhhcChHHHHHHHHHhhCcc-ccccchHhhhhchhHHHHHHHHHHhccccHHHHHH---------
Confidence 289999999633 3 2443 33321 011 122233445556653 33321
Q ss_pred CCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHH
Q psy1503 208 GERGASLSGGQKARINLARAVYKNADIYLLDDPLSAVDMHVGKHLFED 255 (265)
Q Consensus 208 g~~g~~LSgGqrqRialARal~~~~~illLDEp~s~LD~~~~~~i~~~ 255 (265)
....+|--|+-|+|.||.|++.+|+++|.||||+++|+.+..+||.-
T Consensus 154 -SYP~ElTeGE~QKVMIA~A~AnqPrLLIADEPTN~~e~~Tq~QifRL 200 (330)
T COG4170 154 -SYPYELTEGECQKVMIAIALANQPRLLIADEPTNSMEPTTQAQIFRL 200 (330)
T ss_pred -hCcchhccCcceeeeeehhhccCCceEeccCCCcccCccHHHHHHHH
Confidence 23357888999999999999999999999999999999999999863
No 406
>KOG0066|consensus
Probab=99.62 E-value=1.2e-15 Score=141.54 Aligned_cols=164 Identities=22% Similarity=0.298 Sum_probs=107.8
Q ss_pred cEEEEeEEEEeCCCCCCcceeeceEEEcCCcEEEEEcCCCChHHHHHHHHhcCcCCCccEEEEcCeEEEEecCCCCcccc
Q psy1503 88 HVSLDNVTAQWSLQNADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSLGGTVSYASQEPWIFAAT 167 (265)
Q Consensus 88 ~i~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g~i~~v~Q~~~l~~~t 167 (265)
.|.++|.+.+-. ++..+.+.|+.|-.|..+++|||||-||||||+-|..---...-.| .+-+|-|+...-+.|
T Consensus 264 DIKiEnF~ISA~---Gk~LFvnA~L~Iv~GRRYGLVGPNG~GKTTLLkHIa~RalaIPpnI----DvLlCEQEvvad~t~ 336 (807)
T KOG0066|consen 264 DIKIENFDISAQ---GKLLFVNASLTIVYGRRYGLVGPNGMGKTTLLKHIAARALAIPPNI----DVLLCEQEVVADSTS 336 (807)
T ss_pred cceeeeeeeecc---cceeeeccceEEEecceecccCCCCCchHHHHHHHHhhhccCCCCC----ceEeeeeeeeecCcH
Confidence 578888887753 3457889999999999999999999999999999865321111112 267888887655444
Q ss_pred HHHHHhcCC---------------------cccHHHHHHH---HHHhcch-------hHHhcCCCCCccccCCCC-CCCC
Q psy1503 168 IRQNILFGL---------------------PYLRRRYADV---IRVCALQ-------DDFDSLPNGDFTVVGERG-ASLS 215 (265)
Q Consensus 168 i~eni~~~~---------------------~~~~~~~~~~---~~~~~l~-------~~i~~l~~g~~t~vg~~g-~~LS 215 (265)
.-+.++-.. ....+++.++ +++.+.. ..+. ..|....+-+++ ..+|
T Consensus 337 Ai~tvl~aD~kRl~lLeee~~L~~q~e~Gd~taaErl~~v~~ELraiGA~sAEarARRILA--GLGFskEMQ~rPt~kFS 414 (807)
T KOG0066|consen 337 AIDTVLKADKKRLALLEEEAKLMSQIEEGDTTAAERLKEVADELRAIGADSAEARARRILA--GLGFSKEMQERPTTKFS 414 (807)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHhccccchhHHHHHHh--hcCCChhHhcCCccccC
Confidence 444333211 0011222222 1111111 1111 124444444444 5699
Q ss_pred HHHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHHh
Q psy1503 216 GGQKARINLARAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGCL 261 (265)
Q Consensus 216 gGqrqRialARal~~~~~illLDEp~s~LD~~~~~~i~~~~i~~~l 261 (265)
||.|.||+|||||+.+|-++.|||||++||....-.+ ++.+.++-
T Consensus 415 GGWRMRvSLARALflEPTLLMLDEPTNHLDLNAVIWL-dNYLQgWk 459 (807)
T KOG0066|consen 415 GGWRMRVSLARALFLEPTLLMLDEPTNHLDLNAVIWL-DNYLQGWK 459 (807)
T ss_pred CceeeehhHHHHHhcCceeeeecCCccccccceeeeh-hhHHhhhh
Confidence 9999999999999999999999999999999865443 66666654
No 407
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=99.60 E-value=1.4e-15 Score=117.36 Aligned_cols=63 Identities=25% Similarity=0.268 Sum_probs=57.1
Q ss_pred cceeeceEEEcCCcEEEEEcCCCChHHHHHHHHhcCcCCCccEEEEcCe-------------EEEEecCCCCccccHHHH
Q psy1503 105 LTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSLGGT-------------VSYASQEPWIFAATIRQN 171 (265)
Q Consensus 105 ~~l~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g~-------------i~~v~Q~~~l~~~ti~en 171 (265)
++|++++|++++|+.++|+||||||||||++++. +|++.++|. ++|++|+ +|.+||+||
T Consensus 3 ~aL~~vsl~i~~ge~v~I~GpSGsGKSTLl~~l~------~G~i~~~g~di~~~~~~~~~~~~~~~~q~--lf~~ti~~N 74 (107)
T cd00820 3 TSLHGVLVDVYGKVGVLITGDSGIGKTELALELI------KRKHRLVGDDNVEIREDSKDELIGRNPEL--GLEIRLRLN 74 (107)
T ss_pred eEEEeeEEEEcCCEEEEEEcCCCCCHHHHHHHhh------CCeEEEeeEeHHHhhhhhcCCEEEEechh--cchhhHHhh
Confidence 5899999999999999999999999999999986 788999873 6788777 899999999
Q ss_pred HhcC
Q psy1503 172 ILFG 175 (265)
Q Consensus 172 i~~~ 175 (265)
|.+.
T Consensus 75 i~~~ 78 (107)
T cd00820 75 IFLI 78 (107)
T ss_pred ceee
Confidence 9883
No 408
>cd03241 ABC_RecN RecN ATPase involved in DNA repair; ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.60 E-value=4.7e-15 Score=133.04 Aligned_cols=47 Identities=17% Similarity=0.188 Sum_probs=40.1
Q ss_pred CCCHHHHHHHHHHHHHcc----CCCEEEEeCCCCCcCHHHHHHHHHHHHHHH
Q psy1503 213 SLSGGQKARINLARAVYK----NADIYLLDDPLSAVDMHVGKHLFEDCISGC 260 (265)
Q Consensus 213 ~LSgGqrqRialARal~~----~~~illLDEp~s~LD~~~~~~i~~~~i~~~ 260 (265)
.|||||+||++|||+++. +|+++|||||+++||+.....+.+ .+..+
T Consensus 170 ~lS~G~~~r~~la~~~~~~~~~~p~vlllDEp~~~Ld~~~~~~l~~-~l~~~ 220 (276)
T cd03241 170 IASGGELSRLMLALKAILARKDAVPTLIFDEIDTGISGEVAQAVGK-KLKEL 220 (276)
T ss_pred hcChhHHHHHHHHHHHHHhcCCCCCEEEEECCccCCCHHHHHHHHH-HHHHH
Confidence 599999999999997643 999999999999999999988865 34443
No 409
>cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.56 E-value=1.6e-15 Score=132.06 Aligned_cols=111 Identities=14% Similarity=0.103 Sum_probs=76.0
Q ss_pred CcceeeceEEEcCCcEEEEEcCCCChHHHHHHHHhcCcCCCccEEEEcCeEE-EEecCCCCccccHHHHHhcCCcccHHH
Q psy1503 104 DLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSLGGTVS-YASQEPWIFAATIRQNILFGLPYLRRR 182 (265)
Q Consensus 104 ~~~l~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g~i~-~v~Q~~~l~~~ti~eni~~~~~~~~~~ 182 (265)
..+.+|++++++++++++|+||||+||||+++.+.-. .+-.++| |||.+...++ +
T Consensus 17 ~~v~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~~~--------~~la~~g~~vpa~~~~~~--~-------------- 72 (222)
T cd03285 17 AFIPNDVTLTRGKSRFLIITGPNMGGKSTYIRQIGVI--------VLMAQIGCFVPCDSADIP--I-------------- 72 (222)
T ss_pred CeEEeeEEEeecCCeEEEEECCCCCChHHHHHHHHHH--------HHHHHhCCCcCcccEEEe--c--------------
Confidence 4689999999999999999999999999999998721 0001122 3333221000 0
Q ss_pred HHHHHHHhcchhHHhcCCCCCccccCCCCCCCCHHHHHHHHHHHHH--ccCCCEEEEeCC---CCCcCHHHHHHH
Q psy1503 183 YADVIRVCALQDDFDSLPNGDFTVVGERGASLSGGQKARINLARAV--YKNADIYLLDDP---LSAVDMHVGKHL 252 (265)
Q Consensus 183 ~~~~~~~~~l~~~i~~l~~g~~t~vg~~g~~LSgGqrqRialARal--~~~~~illLDEp---~s~LD~~~~~~i 252 (265)
.++++...++.+. ...++|.|++|+..+|+++ +.+|+++||||| |+++|.......
T Consensus 73 ~~~il~~~~l~d~--------------~~~~lS~~~~e~~~~a~il~~~~~~sLvLLDEp~~gT~~lD~~~~~~~ 133 (222)
T cd03285 73 VDCILARVGASDS--------------QLKGVSTFMAEMLETAAILKSATENSLIIIDELGRGTSTYDGFGLAWA 133 (222)
T ss_pred cceeEeeeccccc--------------hhcCcChHHHHHHHHHHHHHhCCCCeEEEEecCcCCCChHHHHHHHHH
Confidence 0111111111111 1257999999999999999 899999999999 899999877544
No 410
>KOG0063|consensus
Probab=99.55 E-value=2.6e-14 Score=132.29 Aligned_cols=142 Identities=24% Similarity=0.316 Sum_probs=102.0
Q ss_pred EEeCCCCCCcceeeceEEEcCCc-----EEEEEcCCCChHHHHHHHHhcCcCCCccEEEEcCeEEEEecCCC-CccccHH
Q psy1503 96 AQWSLQNADLTLNAVSITFKPKQ-----LACIIGAIGAGKTSLLHIILNELRISSGKVSLGGTVSYASQEPW-IFAATIR 169 (265)
Q Consensus 96 ~~~~~~~~~~~l~~isl~i~~G~-----~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g~i~~v~Q~~~-l~~~ti~ 169 (265)
++|++ .+..+.+..|.|+.|+ ++..+|.||.||||++++++|.++|++|.=.--=.++|=||... =+.+|+|
T Consensus 343 y~Yp~--m~k~~g~F~L~i~~GefsdSeiivmlgEngtgkTTfi~mlag~~~pd~~~e~p~lnVSykpqkispK~~~tvR 420 (592)
T KOG0063|consen 343 YSYPK--MKKTVGDFCLCIKVGEFSDSEIIVMLGENGTGKTTFIRMLAGRLKPDEGGEIPVLNVSYKPQKISPKREGTVR 420 (592)
T ss_pred eccCc--ceeeeeeEEEEEeecccCCceeEEEEccCCcchhHHHHHHhcCCCCCccCcccccceeccccccCccccchHH
Confidence 45653 3456788999999885 57899999999999999999999999873211123899999743 4567888
Q ss_pred HHHhcC--Ccc-cHHHHHHHHHHhcchhHHhcCCCCCccccCCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCcCH
Q psy1503 170 QNILFG--LPY-LRRRYADVIRVCALQDDFDSLPNGDFTVVGERGASLSGGQKARINLARAVYKNADIYLLDDPLSAVDM 246 (265)
Q Consensus 170 eni~~~--~~~-~~~~~~~~~~~~~l~~~i~~l~~g~~t~vg~~g~~LSgGqrqRialARal~~~~~illLDEp~s~LD~ 246 (265)
+-+.-- ..+ +..-..++++- ...+..++....+||||+.||+|||-+|-..+|+|+.|||.+-||.
T Consensus 421 ~ll~~kIr~ay~~pqF~~dvmkp-----------L~ie~i~dqevq~lSggelQRval~KOGGKpAdvYliDEpsAylDS 489 (592)
T KOG0063|consen 421 QLLHTKIRDAYMHPQFVNDVMKP-----------LQIENIIDQEVQGLSGGELQRVALALCLGKPADVYLIDEPSAYLDS 489 (592)
T ss_pred HHHHHHhHhhhcCHHHHHhhhhh-----------hhHHHHHhHHhhcCCchhhHHHHHHHhcCCCCceEEecCchhhcCh
Confidence 754210 000 11112222222 2233345566789999999999999999999999999999999999
Q ss_pred HHHH
Q psy1503 247 HVGK 250 (265)
Q Consensus 247 ~~~~ 250 (265)
+.+.
T Consensus 490 eQRi 493 (592)
T KOG0063|consen 490 EQRI 493 (592)
T ss_pred HHHH
Confidence 8643
No 411
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=99.54 E-value=6e-14 Score=149.69 Aligned_cols=64 Identities=22% Similarity=0.299 Sum_probs=52.5
Q ss_pred HhcCCCCCccccCCCCCCCCHHHHHHHHHHHHHccC---CCEEEEeCCCCCcCHHHHHHHHHHHHHHHh
Q psy1503 196 FDSLPNGDFTVVGERGASLSGGQKARINLARAVYKN---ADIYLLDDPLSAVDMHVGKHLFEDCISGCL 261 (265)
Q Consensus 196 i~~l~~g~~t~vg~~g~~LSgGqrqRialARal~~~---~~illLDEp~s~LD~~~~~~i~~~~i~~~l 261 (265)
+..+..||-+ +|+...+|||||.|||-||.-|..+ +.+|||||||.||++...+++++ +++.+.
T Consensus 1683 L~~vGLgYl~-LGq~~~tLSGGE~qRikLa~~l~~~~~~~~lyilDEPt~GLh~~d~~~Ll~-~l~~L~ 1749 (1809)
T PRK00635 1683 LIDNGLGYLP-LGQNLSSLSLSEKIAIKIAKFLYLPPKHPTLFLLDEIATSLDNQQKSALLV-QLRTLV 1749 (1809)
T ss_pred HHHcCCCeee-CCCcCCccCchHHHHHHHHHHHhcCCCCCcEEEEcCCCCCCCHHHHHHHHH-HHHHHH
Confidence 3444556654 7999999999999999999999875 78999999999999999888765 455543
No 412
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.52 E-value=5.6e-14 Score=120.84 Aligned_cols=122 Identities=13% Similarity=0.145 Sum_probs=82.6
Q ss_pred CcceeeceEEEcCCcEEEEEcCCCChHHHHHHHHhcCcCCCccEEEEcCeEE-EEecCCCCc-cccHHHHHhcCCcccHH
Q psy1503 104 DLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSLGGTVS-YASQEPWIF-AATIRQNILFGLPYLRR 181 (265)
Q Consensus 104 ~~~l~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g~i~-~v~Q~~~l~-~~ti~eni~~~~~~~~~ 181 (265)
.++.+|++|++++|++++|+||||+||||+++++.+..-- .++| ++| ..+ .-++.|+|..
T Consensus 16 ~~v~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~~~~~l--------a~~G~~vp---a~~~~l~~~d~I~~------- 77 (204)
T cd03282 16 NFIPNDIYLTRGSSRFHIITGPNMSGKSTYLKQIALLAIM--------AQIGCFVP---AEYATLPIFNRLLS------- 77 (204)
T ss_pred cEEEeeeEEeeCCCcEEEEECCCCCCHHHHHHHHHHHHHH--------HHcCCCcc---hhhcCccChhheeE-------
Confidence 4689999999999999999999999999999999876310 0111 111 111 1133444321
Q ss_pred HHHHHHHHhcchhHHhcCCCCCccccCCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHHh
Q psy1503 182 RYADVIRVCALQDDFDSLPNGDFTVVGERGASLSGGQKARINLARAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGCL 261 (265)
Q Consensus 182 ~~~~~~~~~~l~~~i~~l~~g~~t~vg~~g~~LSgGqrqRialARal~~~~~illLDEp~s~LD~~~~~~i~~~~i~~~l 261 (265)
.+...+ .+.++..++|+|++|+ ..+-++..+|+++|||||++++|+.....+....+..+.
T Consensus 78 ----------------~~~~~d--~~~~~~S~fs~e~~~~-~~il~~~~~~~lvllDE~~~gt~~~~~~~l~~~il~~l~ 138 (204)
T cd03282 78 ----------------RLSNDD--SMERNLSTFASEMSET-AYILDYADGDSLVLIDELGRGTSSADGFAISLAILECLI 138 (204)
T ss_pred ----------------ecCCcc--ccchhhhHHHHHHHHH-HHHHHhcCCCcEEEeccccCCCCHHHHHHHHHHHHHHHH
Confidence 111111 1234456899999975 455567889999999999999999887777665555544
Q ss_pred h
Q psy1503 262 T 262 (265)
Q Consensus 262 ~ 262 (265)
+
T Consensus 139 ~ 139 (204)
T cd03282 139 K 139 (204)
T ss_pred h
Confidence 3
No 413
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=99.52 E-value=2e-14 Score=123.11 Aligned_cols=116 Identities=15% Similarity=0.157 Sum_probs=70.9
Q ss_pred eceEEEcCCcEEEEEcCCCChHHHHHHHHhcC-cCCCccEEEEcCeEEEEecCCCCccccHHHHHhcCCcccHHHHHHHH
Q psy1503 109 AVSITFKPKQLACIIGAIGAGKTSLLHIILNE-LRISSGKVSLGGTVSYASQEPWIFAATIRQNILFGLPYLRRRYADVI 187 (265)
Q Consensus 109 ~isl~i~~G~~~~ivG~~GsGKSTLl~~l~g~-~~~~~G~i~~~g~i~~v~Q~~~l~~~ti~eni~~~~~~~~~~~~~~~ 187 (265)
..++++.+|++++|+||||||||||+++|.+. +.+..|. |+|... ..++.
T Consensus 21 ~~~~~l~~~~~~~l~G~Ng~GKStll~~i~~~~~~~~~g~--------~~~~~~----------~~i~~----------- 71 (202)
T cd03243 21 PNDINLGSGRLLLITGPNMGGKSTYLRSIGLAVLLAQIGC--------FVPAES----------ASIPL----------- 71 (202)
T ss_pred eeeEEEcCCeEEEEECCCCCccHHHHHHHHHHHHHHHcCC--------Cccccc----------cccCC-----------
Confidence 34566668999999999999999999999843 2222221 221110 00000
Q ss_pred HHhcchhHHhcCCCCCccccCCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHH
Q psy1503 188 RVCALQDDFDSLPNGDFTVVGERGASLSGGQKARINLARAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGC 260 (265)
Q Consensus 188 ~~~~l~~~i~~l~~g~~t~vg~~g~~LSgGqrqRialARal~~~~~illLDEp~s~LD~~~~~~i~~~~i~~~ 260 (265)
.+..+..++..+ .+.+....++.+++| +..+.++..+|+++|+|||++++|+.....+....+..+
T Consensus 72 ----~dqi~~~~~~~d--~i~~~~s~~~~e~~~-l~~i~~~~~~~~llllDEp~~gld~~~~~~l~~~ll~~l 137 (202)
T cd03243 72 ----VDRIFTRIGAED--SISDGRSTFMAELLE-LKEILSLATPRSLVLIDELGRGTSTAEGLAIAYAVLEHL 137 (202)
T ss_pred ----cCEEEEEecCcc--cccCCceeHHHHHHH-HHHHHHhccCCeEEEEecCCCCCCHHHHHHHHHHHHHHH
Confidence 000011111110 122334567777776 666667788999999999999999998877755544433
No 414
>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]
Probab=99.50 E-value=1.9e-13 Score=134.60 Aligned_cols=59 Identities=29% Similarity=0.564 Sum_probs=48.4
Q ss_pred CCCccccCCCCCCCCHHHHHHHHHHHHHccCC---CEEEEeCCCCCcCHHHHHHHHHHHHHHHh
Q psy1503 201 NGDFTVVGERGASLSGGQKARINLARAVYKNA---DIYLLDDPLSAVDMHVGKHLFEDCISGCL 261 (265)
Q Consensus 201 ~g~~t~vg~~g~~LSgGqrqRialARal~~~~---~illLDEp~s~LD~~~~~~i~~~~i~~~l 261 (265)
.||- .+|+...+||||+.|||-||.-|.++. -+|||||||.||=.+-.+++++ ++.++.
T Consensus 811 LgYi-~LGQpatTLSGGEaQRvKLA~EL~k~~tg~TlYiLDEPTTGLH~~Di~kLl~-VL~rLv 872 (935)
T COG0178 811 LGYI-KLGQPATTLSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLHFDDIKKLLE-VLHRLV 872 (935)
T ss_pred cceE-ecCCccccccchHHHHHHHHHHHhhccCCCeEEEeCCCCCCCCHHHHHHHHH-HHHHHH
Confidence 3443 478999999999999999999998877 9999999999998887777754 444443
No 415
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=99.50 E-value=7.4e-14 Score=123.49 Aligned_cols=135 Identities=24% Similarity=0.258 Sum_probs=94.8
Q ss_pred ceEEEcCCcEEEEEcCCCChHHHHHHHHhcCcCCCccEEEEcCeEEEEecCCCCccccHHHHH-----h--cCCcccHHH
Q psy1503 110 VSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSLGGTVSYASQEPWIFAATIRQNI-----L--FGLPYLRRR 182 (265)
Q Consensus 110 isl~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g~i~~v~Q~~~l~~~ti~eni-----~--~~~~~~~~~ 182 (265)
.=+.+.+|+.++|+||+|+|||||++.+.+.+....+.+.+ +.++.+++..-...+.+.+ . ++.+. ..+
T Consensus 9 ~~~~i~~Gqr~~I~G~~G~GKTTLlr~I~n~l~~~~fdv~~---~v~vI~er~~ev~el~~~I~~~~v~~~~~~~~-~~~ 84 (249)
T cd01128 9 LFAPIGKGQRGLIVAPPKAGKTTLLQSIANAITKNHPEVYL---IVLLIDERPEEVTDMQRSVKGEVIASTFDEPP-ERH 84 (249)
T ss_pred eecccCCCCEEEEECCCCCCHHHHHHHHHhccccccCCeEE---EEEEccCCCccHHHHHHHhccEEEEecCCCCH-HHH
Confidence 33578999999999999999999999999998876444432 4455665432222233333 1 11111 111
Q ss_pred HH---HH---HH---Hhc-----chhHHhcCCCCCccccCCCCCCCCHHH--------HHHHHHHHHHccCCCEEEEeCC
Q psy1503 183 YA---DV---IR---VCA-----LQDDFDSLPNGDFTVVGERGASLSGGQ--------KARINLARAVYKNADIYLLDDP 240 (265)
Q Consensus 183 ~~---~~---~~---~~~-----l~~~i~~l~~g~~t~vg~~g~~LSgGq--------rqRialARal~~~~~illLDEp 240 (265)
+. .+ ++ ..+ +-+.+.+++.++++.+++.|..+|||| +||+++||++.++++|.+| |
T Consensus 85 ~~~~~~~~~~a~~~~~~G~~vll~iDei~r~a~a~~ev~~~~G~~~sgG~~~~~~~~~~q~~~~Ar~~~~~gsIt~l--~ 162 (249)
T cd01128 85 VQVAEMVLEKAKRLVEHGKDVVILLDSITRLARAYNTVVPPSGKILSGGVDANALHKPKRFFGAARNIEEGGSLTII--A 162 (249)
T ss_pred HHHHHHHHHHHHHHHHCCCCEEEEEECHHHhhhhhhhccccCCCCCCCCcChhhhhhhHHHHHHhcCCCCCCceEEe--e
Confidence 11 11 11 111 235678899999999999999999999 9999999999999999999 9
Q ss_pred CCCcCHHHHH
Q psy1503 241 LSAVDMHVGK 250 (265)
Q Consensus 241 ~s~LD~~~~~ 250 (265)
|+.+|..++.
T Consensus 163 T~~~d~~~~~ 172 (249)
T cd01128 163 TALVDTGSRM 172 (249)
T ss_pred eheecCCCcc
Confidence 9999965443
No 416
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.41 E-value=1.6e-12 Score=112.53 Aligned_cols=117 Identities=15% Similarity=0.116 Sum_probs=78.2
Q ss_pred cceeeceEEEcCCcEEEEEcCCCChHHHHHHHHh--cCcCCCccEEEEcC--eEEEEecCCCCcc--ccHHHHHhcCCcc
Q psy1503 105 LTLNAVSITFKPKQLACIIGAIGAGKTSLLHIIL--NELRISSGKVSLGG--TVSYASQEPWIFA--ATIRQNILFGLPY 178 (265)
Q Consensus 105 ~~l~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~--g~~~~~~G~i~~~g--~i~~v~Q~~~l~~--~ti~eni~~~~~~ 178 (265)
.+-+|+++.=..+.+++|+||||+|||||++.+. ..+ +..|...... .++|..|...-+. .++.+++.
T Consensus 17 ~vpnd~~l~~~~~~~~~itGpNg~GKStlLk~i~~~~~l-a~~G~~v~a~~~~~~~~d~i~~~l~~~~si~~~~S----- 90 (213)
T cd03281 17 FVPNDTEIGGGGPSIMVITGPNSSGKSVYLKQVALIVFL-AHIGSFVPADSATIGLVDKIFTRMSSRESVSSGQS----- 90 (213)
T ss_pred eEcceEEecCCCceEEEEECCCCCChHHHHHHHHHHHHH-HhCCCeeEcCCcEEeeeeeeeeeeCCccChhhccc-----
Confidence 3455555542223789999999999999999997 333 4556554332 4677776532221 12222110
Q ss_pred cHHHHHHHHHHhcchhHHhcCCCCCccccCCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHH
Q psy1503 179 LRRRYADVIRVCALQDDFDSLPNGDFTVVGERGASLSGGQKARINLARAVYKNADIYLLDDPLSAVDMHVGKHLFEDCIS 258 (265)
Q Consensus 179 ~~~~~~~~~~~~~l~~~i~~l~~g~~t~vg~~g~~LSgGqrqRialARal~~~~~illLDEp~s~LD~~~~~~i~~~~i~ 258 (265)
.+ .-+-||+++|++++.+|+++|||||++++|+.....+....+.
T Consensus 91 ----------------------------------~f-~~el~~l~~~l~~~~~~slvllDE~~~gtd~~~~~~~~~ail~ 135 (213)
T cd03281 91 ----------------------------------AF-MIDLYQVSKALRLATRRSLVLIDEFGKGTDTEDGAGLLIATIE 135 (213)
T ss_pred ----------------------------------hH-HHHHHHHHHHHHhCCCCcEEEeccccCCCCHHHHHHHHHHHHH
Confidence 00 2345899999999999999999999999999877777666666
Q ss_pred HHhh
Q psy1503 259 GCLT 262 (265)
Q Consensus 259 ~~l~ 262 (265)
.+.+
T Consensus 136 ~l~~ 139 (213)
T cd03281 136 HLLK 139 (213)
T ss_pred HHHh
Confidence 5543
No 417
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=99.38 E-value=8.1e-12 Score=126.12 Aligned_cols=135 Identities=16% Similarity=0.155 Sum_probs=86.8
Q ss_pred cEEEEeEEEEeCCCCCCcceeeceEEEcCC-cEEEEEcCCCChHHHHHHHHhcC-cCCCccEEEEcCeEEEEecCCCCcc
Q psy1503 88 HVSLDNVTAQWSLQNADLTLNAVSITFKPK-QLACIIGAIGAGKTSLLHIILNE-LRISSGKVSLGGTVSYASQEPWIFA 165 (265)
Q Consensus 88 ~i~~~~~~~~~~~~~~~~~l~~isl~i~~G-~~~~ivG~~GsGKSTLl~~l~g~-~~~~~G~i~~~g~i~~v~Q~~~l~~ 165 (265)
.+.++++.+-+-.. . ..-.+++.+..+ ++++|+||||+|||||++++.+. +.+..|. ++|..... .
T Consensus 295 ~i~l~~~rhPll~~-~--~~vp~di~l~~~~~~liItGpNg~GKSTlLK~i~~~~l~aq~G~--------~Vpa~~~~-~ 362 (771)
T TIGR01069 295 KIILENARHPLLKE-P--KVVPFTLNLKFEKRVLAITGPNTGGKTVTLKTLGLLALMFQSGI--------PIPANEHS-E 362 (771)
T ss_pred CEEEccccCceecC-C--ceEeceeEeCCCceEEEEECCCCCCchHHHHHHHHHHHHHHhCC--------CccCCccc-c
Confidence 46776665422110 0 122478888877 89999999999999999999987 4454441 33332210 0
Q ss_pred ccHHHHHhcCCcccHHHHHHHHHHhcchhHHhcCCCCCccccCCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCcC
Q psy1503 166 ATIRQNILFGLPYLRRRYADVIRVCALQDDFDSLPNGDFTVVGERGASLSGGQKARINLARAVYKNADIYLLDDPLSAVD 245 (265)
Q Consensus 166 ~ti~eni~~~~~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~vg~~g~~LSgGqrqRialARal~~~~~illLDEp~s~LD 245 (265)
..+.+++.... .. .+ .+.++..+||+|++++..+++++ .+|+++|||||++|+|
T Consensus 363 ~~~~d~i~~~i--~~------------~~-----------si~~~LStfS~~m~~~~~il~~~-~~~sLvLlDE~g~GtD 416 (771)
T TIGR01069 363 IPYFEEIFADI--GD------------EQ-----------SIEQNLSTFSGHMKNISAILSKT-TENSLVLFDELGAGTD 416 (771)
T ss_pred ccchhheeeec--Ch------------Hh-----------HHhhhhhHHHHHHHHHHHHHHhc-CCCcEEEecCCCCCCC
Confidence 01112211000 00 00 11233468999999999999987 7899999999999999
Q ss_pred HHHHHHHHHHHHHHH
Q psy1503 246 MHVGKHLFEDCISGC 260 (265)
Q Consensus 246 ~~~~~~i~~~~i~~~ 260 (265)
+.....+....+..+
T Consensus 417 ~~eg~ala~aiLe~l 431 (771)
T TIGR01069 417 PDEGSALAISILEYL 431 (771)
T ss_pred HHHHHHHHHHHHHHH
Confidence 999988865555444
No 418
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.34 E-value=2.5e-12 Score=136.81 Aligned_cols=88 Identities=22% Similarity=0.180 Sum_probs=74.7
Q ss_pred CccccHHHHHhcCCcccHHHHHHHHHHhcchhHHhcCCCCCccccCCCCCCCCHHHHH------HHHHHHHHccCCCEEE
Q psy1503 163 IFAATIRQNILFGLPYLRRRYADVIRVCALQDDFDSLPNGDFTVVGERGASLSGGQKA------RINLARAVYKNADIYL 236 (265)
Q Consensus 163 l~~~ti~eni~~~~~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~vg~~g~~LSgGqrq------RialARal~~~~~ill 236 (265)
.|+||+.+||.+ .+..... ..+++..+...++..+|.| +|.++.++ .||||||| |++||||++.+|++++
T Consensus 1153 ~~~~~~~~~i~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~lS~Gq~~~~~~~~rlala~~~~~~~~il~ 1228 (1311)
T TIGR00606 1153 TYRGQDIEYIEI-RSDADEN-VSASDKRRNYNYRVVMLKG-DTALDMRG-RCSAGQKVLASLIIRLALAETFCLNCGIIA 1228 (1311)
T ss_pred HcCccHHHHhhc-CCCCChH-HHHHHHcCchHHHhccCCC-CeecCCCC-CCchhhhhHhhHhHHHHHHHHHhcCCCEEE
Confidence 688999999999 5432222 4566667788888889999 78888775 89999999 9999999999999999
Q ss_pred EeCCCCCcCHHHHHHHHH
Q psy1503 237 LDDPLSAVDMHVGKHLFE 254 (265)
Q Consensus 237 LDEp~s~LD~~~~~~i~~ 254 (265)
|||||++||+.+...+.+
T Consensus 1229 lDEPt~~lD~~~~~~l~~ 1246 (1311)
T TIGR00606 1229 LDEPTTNLDRENIESLAH 1246 (1311)
T ss_pred eeCCcccCCHHHHHHHHH
Confidence 999999999999887754
No 419
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=99.34 E-value=5.7e-13 Score=114.67 Aligned_cols=39 Identities=15% Similarity=0.251 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHccCCCEEEEeCCC-----CCcCHHHHHHHHHHH
Q psy1503 218 QKARINLARAVYKNADIYLLDDPL-----SAVDMHVGKHLFEDC 256 (265)
Q Consensus 218 qrqRialARal~~~~~illLDEp~-----s~LD~~~~~~i~~~~ 256 (265)
|++++.|||+++.+|+++++|||| ++||+.+.+++.+..
T Consensus 157 ~~~f~~ia~~l~~~p~~~~ldEp~~~~~~~~ld~~~~~~~~~~~ 200 (215)
T PTZ00132 157 EKPFLWLARRLTNDPNLVFVGAPALAPEEIQIDPELVAQAEKEL 200 (215)
T ss_pred HHHHHHHHHHHhhcccceecCCcccCCCccccCHHHHHHHHHHH
Confidence 999999999999999999999999 999999999986643
No 420
>PF02463 SMC_N: RecF/RecN/SMC N terminal domain; InterPro: IPR003395 This domain is found at the N terminus of structural maintenance of chromosomes (SMC) proteins, which function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair and epigenetic silencing of gene expression []. The domain is also found in RecF and RecN proteins, which are involved in DNA metabolism and recombination.; PDB: 3HTK_A 1W1W_C 2WD5_A 3L51_A 1XEW_Y 3KTA_B 3NWC_B 1XEX_A 1GXL_C 1GXK_A ....
Probab=99.31 E-value=7.1e-12 Score=108.23 Aligned_cols=43 Identities=35% Similarity=0.451 Sum_probs=33.9
Q ss_pred CCCHHHHHHHHHHHHH----ccCCCEEEEeCCCCCcCHHHHHHHHHH
Q psy1503 213 SLSGGQKARINLARAV----YKNADIYLLDDPLSAVDMHVGKHLFED 255 (265)
Q Consensus 213 ~LSgGqrqRialARal----~~~~~illLDEp~s~LD~~~~~~i~~~ 255 (265)
.||||||.+++||--| +.+++++|||||.++||......+.+.
T Consensus 136 ~lSgGEk~~~~Lal~lA~~~~~~~p~~ilDEvd~~LD~~~~~~l~~~ 182 (220)
T PF02463_consen 136 FLSGGEKSLVALALLLALQRYKPSPFLILDEVDAALDEQNRKRLADL 182 (220)
T ss_dssp GS-HHHHHHHHHHHHHHHHTCS--SEEEEESTTTTS-HHHHHHHHHH
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 8999999999998543 568899999999999999999887653
No 421
>PRK00064 recF recombination protein F; Reviewed
Probab=99.29 E-value=3.8e-11 Score=111.77 Aligned_cols=44 Identities=34% Similarity=0.261 Sum_probs=40.1
Q ss_pred CCCCHHHHHHHHHHHHHc---------cCCCEEEEeCCCCCcCHHHHHHHHHH
Q psy1503 212 ASLSGGQKARINLARAVY---------KNADIYLLDDPLSAVDMHVGKHLFED 255 (265)
Q Consensus 212 ~~LSgGqrqRialARal~---------~~~~illLDEp~s~LD~~~~~~i~~~ 255 (265)
..+|.||+++++||++++ .+|+|+|||||+++||+.....+++.
T Consensus 272 ~~~S~Gq~~~~~lal~la~~~~~~~~~~~~~ilLlDd~~s~LD~~~~~~l~~~ 324 (361)
T PRK00064 272 DFGSTGQQKLLLLALKLAEAELLKEETGEAPILLLDDVASELDDGRRAALLER 324 (361)
T ss_pred HhCChHHHHHHHHHHHHHHHHHHHHhhCCCCEEEEccchhhhCHHHHHHHHHH
Confidence 579999999999999885 79999999999999999999888663
No 422
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=99.28 E-value=3.5e-12 Score=107.84 Aligned_cols=53 Identities=13% Similarity=0.094 Sum_probs=39.2
Q ss_pred CCCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHHhh
Q psy1503 209 ERGASLSGGQKARINLARAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGCLT 262 (265)
Q Consensus 209 ~~g~~LSgGqrqRialARal~~~~~illLDEp~s~LD~~~~~~i~~~~i~~~l~ 262 (265)
.+...+|+|++|...+++. ..+|+++|+|||++++|+.....+....+..+.+
T Consensus 57 ~~~s~fs~~~~~l~~~l~~-~~~~~llllDEp~~g~d~~~~~~~~~~~l~~l~~ 109 (185)
T smart00534 57 QGLSTFMVEMKETANILKN-ATENSLVLLDELGRGTSTYDGVAIAAAVLEYLLE 109 (185)
T ss_pred ccccHHHHHHHHHHHHHHh-CCCCeEEEEecCCCCCCHHHHHHHHHHHHHHHHh
Confidence 4456788888874443332 3499999999999999999888887766655543
No 423
>cd03284 ABC_MutS1 MutS1 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam
Probab=99.26 E-value=3.4e-11 Score=104.46 Aligned_cols=36 Identities=22% Similarity=0.214 Sum_probs=32.2
Q ss_pred CcceeeceEEEcCCcEEEEEcCCCChHHHHHHHHhcC
Q psy1503 104 DLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNE 140 (265)
Q Consensus 104 ~~~l~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~g~ 140 (265)
..+.+|++++.++ ++++|+|||||||||+++++.+.
T Consensus 18 ~~v~n~~~l~~~~-~~~~l~Gpn~sGKstllr~i~~~ 53 (216)
T cd03284 18 PFVPNDTELDPER-QILLITGPNMAGKSTYLRQVALI 53 (216)
T ss_pred ceEeeeEEecCCc-eEEEEECCCCCChHHHHHHHHHH
Confidence 4578999999887 99999999999999999999753
No 424
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.24 E-value=3.6e-11 Score=104.72 Aligned_cols=48 Identities=15% Similarity=0.166 Sum_probs=42.9
Q ss_pred CcceeeceEEEcCCcEEEEEcCCCChHHHHHHHHhc-CcCCCccEEEEc
Q psy1503 104 DLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILN-ELRISSGKVSLG 151 (265)
Q Consensus 104 ~~~l~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~g-~~~~~~G~i~~~ 151 (265)
.++.+|+++.+.+|++++|+||||+||||+++++.+ .+.+..|.....
T Consensus 18 ~~v~n~i~~~~~~g~~~~itG~N~~GKStll~~i~~~~~la~~G~~v~a 66 (222)
T cd03287 18 SFVPNDIHLSAEGGYCQIITGPNMGGKSSYIRQVALITIMAQIGSFVPA 66 (222)
T ss_pred CEEEEeEEEEecCCcEEEEECCCCCCHHHHHHHHHHHHHHHhCCCEEEc
Confidence 468999999999999999999999999999999999 778888876443
No 425
>KOG0063|consensus
Probab=99.19 E-value=1.1e-11 Score=115.03 Aligned_cols=125 Identities=24% Similarity=0.345 Sum_probs=83.6
Q ss_pred EcCCcEEEEEcCCCChHHHHHHHHhcCcCCCccEEEEcC----e--------------------------EEEEecCCCC
Q psy1503 114 FKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSLGG----T--------------------------VSYASQEPWI 163 (265)
Q Consensus 114 i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g----~--------------------------i~~v~Q~~~l 163 (265)
.++|++.++||.||-||||-++.++|-.+|.-|.-...- . .-||.|-|..
T Consensus 97 prpg~vlglvgtngigkstAlkilagk~kpnlg~~~~pp~w~~il~~frgselq~yftk~le~~lk~~~kpQyvd~ipr~ 176 (592)
T KOG0063|consen 97 PRPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRYDNPPDWQEILTYFRGSELQNYFTKILEDNLKAIIKPQYVDQIPRA 176 (592)
T ss_pred CCcchhccccccCcccHHHHHHHHhCCCCCCCCCCCCCcchHHHhhhhhhHHHhhhhhhhccccccCcCChHHHHHHHHH
Confidence 368999999999999999999999999999887542110 0 1122222222
Q ss_pred ccccHHHHHhcCCcccHHHHHHHHHHhcchhHHhcCCCCCccccCCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCC
Q psy1503 164 FAATIRQNILFGLPYLRRRYADVIRVCALQDDFDSLPNGDFTVVGERGASLSGGQKARINLARAVYKNADIYLLDDPLSA 243 (265)
Q Consensus 164 ~~~ti~eni~~~~~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~vg~~g~~LSgGqrqRialARal~~~~~illLDEp~s~ 243 (265)
..+++.+++.-- .+.+...+++....|...++ .....||||+-||.++|.+.++++|++++|||.|.
T Consensus 177 ~k~~v~~~l~~~--~~r~~~~~~~~~~~L~~~~~-----------re~~~lsggelqrfaia~~~vq~advyMFDEpSsY 243 (592)
T KOG0063|consen 177 VKGTVGSLLDRK--DERDNKEEVCDQLDLNNLLD-----------REVEQLSGGELQRFAIAMVCVQKADVYMFDEPSSY 243 (592)
T ss_pred HHHHHHHHHHHH--hhcccHHHHHHHHHHhhHHH-----------hhhhhcccchhhhhhhhhhhhhhcceeEecCCccc
Confidence 233444443211 11112233333333333222 33468999999999999999999999999999999
Q ss_pred cCHHHHHH
Q psy1503 244 VDMHVGKH 251 (265)
Q Consensus 244 LD~~~~~~ 251 (265)
||...+-.
T Consensus 244 LDVKQRLk 251 (592)
T KOG0063|consen 244 LDVKQRLK 251 (592)
T ss_pred chHHHhhh
Confidence 99986544
No 426
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=99.14 E-value=1.2e-10 Score=104.33 Aligned_cols=36 Identities=28% Similarity=0.312 Sum_probs=34.2
Q ss_pred cEEEEEcCCCChHHHHHHHHhcCcCCCccEEEEcCe
Q psy1503 118 QLACIIGAIGAGKTSLLHIILNELRISSGKVSLGGT 153 (265)
Q Consensus 118 ~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g~ 153 (265)
..++|+||+|||||||+++|+|++.|.+|+|.++|.
T Consensus 112 ~~~~i~g~~g~GKttl~~~l~~~~~~~~G~i~~~g~ 147 (270)
T TIGR02858 112 LNTLIISPPQCGKTTLLRDLARILSTGISQLGLRGK 147 (270)
T ss_pred eEEEEEcCCCCCHHHHHHHHhCccCCCCceEEECCE
Confidence 678999999999999999999999999999999884
No 427
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=99.12 E-value=4.4e-09 Score=106.67 Aligned_cols=52 Identities=13% Similarity=0.143 Sum_probs=44.4
Q ss_pred CCCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHHh
Q psy1503 209 ERGASLSGGQKARINLARAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGCL 261 (265)
Q Consensus 209 ~~g~~LSgGqrqRialARal~~~~~illLDEp~s~LD~~~~~~i~~~~i~~~l 261 (265)
.+..++|+|++|++.|++++ .+|+++|||||++|+|+.....+....+..+.
T Consensus 386 ~~lStfS~~m~~~~~Il~~~-~~~sLvLlDE~~~GtDp~eg~ala~aile~l~ 437 (782)
T PRK00409 386 QSLSTFSGHMTNIVRILEKA-DKNSLVLFDELGAGTDPDEGAALAISILEYLR 437 (782)
T ss_pred hchhHHHHHHHHHHHHHHhC-CcCcEEEecCCCCCCCHHHHHHHHHHHHHHHH
Confidence 44578999999999999999 89999999999999999998888665554443
No 428
>TIGR03238 dnd_assoc_3 dnd system-associated protein 3. cereus E33L, Hahella chejuensis KCTC 2396, Pseudoalteromonas haloplanktis TAC12, and Escherichia coli B7A.
Probab=99.07 E-value=1.2e-10 Score=110.55 Aligned_cols=48 Identities=25% Similarity=0.376 Sum_probs=44.0
Q ss_pred CcceeeceEEEcCCcEEEEEcCCCChHHHHHHHHhcCcCCCcc-EEEEcCe
Q psy1503 104 DLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSG-KVSLGGT 153 (265)
Q Consensus 104 ~~~l~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G-~i~~~g~ 153 (265)
..+|++||+++++|++++|+||||||||||++ .|...|++| +|.++|.
T Consensus 19 ~~vL~~Vsl~i~~GEiv~L~G~SGsGKSTLLr--~~l~~~~sGg~I~ldg~ 67 (504)
T TIGR03238 19 ERILVKFNKELPSSSLLFLCGSSGDGKSEILA--ENKRKFSEGYEFFLDAT 67 (504)
T ss_pred HHHHhCCceeecCCCEEEEECCCCCCHHHHHh--cCCCCCCCCCEEEECCE
Confidence 35799999999999999999999999999999 788888888 7999984
No 429
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.03 E-value=5.7e-10 Score=114.40 Aligned_cols=53 Identities=25% Similarity=0.444 Sum_probs=46.4
Q ss_pred cCCCCCCCCHHHHHHHHHHHHHccCC--CEEEEeCCCCCcCHHHHHHHHHHHHHHH
Q psy1503 207 VGERGASLSGGQKARINLARAVYKNA--DIYLLDDPLSAVDMHVGKHLFEDCISGC 260 (265)
Q Consensus 207 vg~~g~~LSgGqrqRialARal~~~~--~illLDEp~s~LD~~~~~~i~~~~i~~~ 260 (265)
.+....+|||||+|||+|||||..+| ++|||||||++||+....++++ .+..+
T Consensus 481 l~r~~~tLSGGE~QRv~LA~aL~~~~~~~llILDEPtagLD~~~~~~L~~-~L~~L 535 (924)
T TIGR00630 481 LSRAAGTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNERLIN-TLKRL 535 (924)
T ss_pred cCCCcCcCCHHHHHHHHHHHHHhhCCCCcEEEEcCCccCCCHHHHHHHHH-HHHHH
Confidence 46778899999999999999999986 8999999999999999988865 44444
No 430
>PRK06793 fliI flagellum-specific ATP synthase; Validated
Probab=99.01 E-value=1.5e-09 Score=102.63 Aligned_cols=126 Identities=15% Similarity=0.162 Sum_probs=89.0
Q ss_pred cEEEEeEEEEeCCCCCCcceeeceEEEcCCcEEEEEcCCCChHHHHHHHHhcCcCCCccEEEEcCeEEEEecCCCCcccc
Q psy1503 88 HVSLDNVTAQWSLQNADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSLGGTVSYASQEPWIFAAT 167 (265)
Q Consensus 88 ~i~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g~i~~v~Q~~~l~~~t 167 (265)
.++.+.++..|.. ...+++.+ |++.+|+.++|+|++|+|||||+++|++..+|+.|.|. ++.|.. .+
T Consensus 130 ~~~r~~i~~~l~T--GiraID~l-l~I~~Gqri~I~G~sG~GKTtLl~~Ia~~~~~~~gvI~------~iGerg----~e 196 (432)
T PRK06793 130 AFEREEITDVFET--GIKSIDSM-LTIGIGQKIGIFAGSGVGKSTLLGMIAKNAKADINVIS------LVGERG----RE 196 (432)
T ss_pred chheechhhccCC--CCEEEecc-ceecCCcEEEEECCCCCChHHHHHHHhccCCCCeEEEE------eCCCCc----cc
Confidence 3455666666643 34577774 99999999999999999999999999999999887553 333432 34
Q ss_pred HHHHHhcCCcccHHHHHHHHHHhcchhHHhcCCCCCccccCCCCCCCCHHHHHHHHHHHHHc-------cCCCEEEEeCC
Q psy1503 168 IRQNILFGLPYLRRRYADVIRVCALQDDFDSLPNGDFTVVGERGASLSGGQKARINLARAVY-------KNADIYLLDDP 240 (265)
Q Consensus 168 i~eni~~~~~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~vg~~g~~LSgGqrqRialARal~-------~~~~illLDEp 240 (265)
++|.+.. .+...++.. |.+=....+-|.|+|+|++.+.+.. .++-++++|||
T Consensus 197 v~e~~~~-----------~l~~~gl~~----------tvvv~~tsd~s~~~r~ra~~~a~~iAEyfr~~G~~VLlilDsl 255 (432)
T PRK06793 197 VKDFIRK-----------ELGEEGMRK----------SVVVVATSDESHLMQLRAAKLATSIAEYFRDQGNNVLLMMDSV 255 (432)
T ss_pred HHHHHHH-----------Hhhhcccce----------eEEEEECCCCCHHHHHHHHHHHHHHHHHHHHcCCcEEEEecch
Confidence 5554321 111111111 1111233578999999999998877 68889999999
Q ss_pred CCCcCHH
Q psy1503 241 LSAVDMH 247 (265)
Q Consensus 241 ~s~LD~~ 247 (265)
|+..|+.
T Consensus 256 Tr~a~A~ 262 (432)
T PRK06793 256 TRFADAR 262 (432)
T ss_pred HHHHHHH
Confidence 9999997
No 431
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=98.95 E-value=9.4e-10 Score=113.00 Aligned_cols=53 Identities=26% Similarity=0.456 Sum_probs=46.7
Q ss_pred cCCCCCCCCHHHHHHHHHHHHHccCC--CEEEEeCCCCCcCHHHHHHHHHHHHHHH
Q psy1503 207 VGERGASLSGGQKARINLARAVYKNA--DIYLLDDPLSAVDMHVGKHLFEDCISGC 260 (265)
Q Consensus 207 vg~~g~~LSgGqrqRialARal~~~~--~illLDEp~s~LD~~~~~~i~~~~i~~~ 260 (265)
.+....+|||||+|||+|||||..+| ++|||||||++||+.....+++ .+..+
T Consensus 483 l~r~~~~LSgGE~QRv~LA~aL~~~~~~~llILDEPtagLd~~~~~~L~~-~L~~L 537 (943)
T PRK00349 483 LSRSAGTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNDRLIE-TLKHL 537 (943)
T ss_pred CCCchhhCCHHHHHHHHHHHHHhhCCCCcEEEecCCccCCCHHHHHHHHH-HHHHH
Confidence 46778899999999999999999997 9999999999999999988865 44444
No 432
>cd03286 ABC_MSH6_euk MutS6 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=98.93 E-value=2.7e-09 Score=92.70 Aligned_cols=119 Identities=15% Similarity=0.185 Sum_probs=70.9
Q ss_pred CcceeeceEEEcCCcEEEEEcCCCChHHHHHHHHhcCcCCCc-cEEEEcC---eEEEEecCCCCcc-ccHHHHHhcCCcc
Q psy1503 104 DLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISS-GKVSLGG---TVSYASQEPWIFA-ATIRQNILFGLPY 178 (265)
Q Consensus 104 ~~~l~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~-G~i~~~g---~i~~v~Q~~~l~~-~ti~eni~~~~~~ 178 (265)
.++.+|++|++++|++++|+||||+||||+++.+....-... |.- +.. +++++ ..+|. ....|++..+...
T Consensus 17 ~~v~ndi~l~~~~~~~~~itG~n~~gKs~~l~~i~~~~~la~~G~~-vpa~~~~i~~~---~~i~~~~~~~d~~~~~~St 92 (218)
T cd03286 17 SFVPNDVDLGATSPRILVLTGPNMGGKSTLLRTVCLAVIMAQMGMD-VPAKSMRLSLV---DRIFTRIGARDDIMKGEST 92 (218)
T ss_pred CeEEeeeEEeecCCcEEEEECCCCCchHHHHHHHHHHHHHHHcCCc-cCccccEeccc---cEEEEecCcccccccCcch
Confidence 468899999999999999999999999999999876431111 110 000 01111 11121 1223333322211
Q ss_pred cHHHHHHHHHHhcchhHHhcCCCCCccccCCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHH
Q psy1503 179 LRRRYADVIRVCALQDDFDSLPNGDFTVVGERGASLSGGQKARINLARAVYKNADIYLLDDPLSAVDMHVGKHLFEDCIS 258 (265)
Q Consensus 179 ~~~~~~~~~~~~~l~~~i~~l~~g~~t~vg~~g~~LSgGqrqRialARal~~~~~illLDEp~s~LD~~~~~~i~~~~i~ 258 (265)
+. -+-+|++-.-....+|.++|||||++|+|+.....+....+.
T Consensus 93 -----------------------------------F~-~e~~~~~~il~~~~~~sLvLlDE~~~Gt~~~dg~~la~ail~ 136 (218)
T cd03286 93 -----------------------------------FM-VELSETANILRHATPDSLVILDELGRGTSTHDGYAIAHAVLE 136 (218)
T ss_pred -----------------------------------HH-HHHHHHHHHHHhCCCCeEEEEecccCCCCchHHHHHHHHHHH
Confidence 11 111222111112358999999999999999998888776566
Q ss_pred HHhh
Q psy1503 259 GCLT 262 (265)
Q Consensus 259 ~~l~ 262 (265)
.+.+
T Consensus 137 ~L~~ 140 (218)
T cd03286 137 YLVK 140 (218)
T ss_pred HHHH
Confidence 5554
No 433
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=98.90 E-value=9.9e-09 Score=95.98 Aligned_cols=91 Identities=22% Similarity=0.275 Sum_probs=67.4
Q ss_pred HHHHHHHhcCCCCCCcCCCCCCCCCCcEEEEeEEEEeCCCCCCccee-----------eceEEEcCCcEEEEEcCCCChH
Q psy1503 62 DRVLNFLLLGEHEPRKINSVHSNGKGHVSLDNVTAQWSLQNADLTLN-----------AVSITFKPKQLACIIGAIGAGK 130 (265)
Q Consensus 62 ~ri~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~-----------~isl~i~~G~~~~ivG~~GsGK 130 (265)
+|+.+++..++..... +....+.+.|+|++|.|+.. +++|+ |+++.|.+|+.++|+||+||||
T Consensus 108 ER~~~Ll~v~~vn~~~----~e~~~~ri~Fe~LTf~YP~e--r~~Le~~~~~~~~R~id~~~pig~Gq~~~IvG~~g~GK 181 (415)
T TIGR00767 108 ERYFALLKVESVNGDD----PEKAKNRVLFENLTPLYPNE--RLRLETSTEDLSTRVLDLFAPIGKGQRGLIVAPPKAGK 181 (415)
T ss_pred hHHHHHhCCCccCCCC----ccccCCCeEEEEeeecCCCc--cceeecCccccceeeeeeEEEeCCCCEEEEECCCCCCh
Confidence 8998888765542111 12234579999999999853 46886 9999999999999999999999
Q ss_pred HHHHHHHhcCcCCCccEEEEcCeEEEEecCC
Q psy1503 131 TSLLHIILNELRISSGKVSLGGTVSYASQEP 161 (265)
Q Consensus 131 STLl~~l~g~~~~~~G~i~~~g~i~~v~Q~~ 161 (265)
|||++.|.+.+....-++.+ +.++.+++
T Consensus 182 TtL~~~i~~~I~~nhfdv~v---~VlLIgER 209 (415)
T TIGR00767 182 TVLLQKIAQAITRNHPEVEL---IVLLIDER 209 (415)
T ss_pred hHHHHHHHHhhcccCCceEE---EEEEcCCC
Confidence 99999999987654222222 44555553
No 434
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=98.88 E-value=1.2e-08 Score=89.39 Aligned_cols=120 Identities=18% Similarity=0.185 Sum_probs=67.4
Q ss_pred EEcCCcEEEEEcCCCChHHHH-HHHHhcCcCCCccEEEEcCeEEEEecCCCCccccHHHHH-hcCCcccHHHHHHHHHHh
Q psy1503 113 TFKPKQLACIIGAIGAGKTSL-LHIILNELRISSGKVSLGGTVSYASQEPWIFAATIRQNI-LFGLPYLRRRYADVIRVC 190 (265)
Q Consensus 113 ~i~~G~~~~ivG~~GsGKSTL-l~~l~g~~~~~~G~i~~~g~i~~v~Q~~~l~~~ti~eni-~~~~~~~~~~~~~~~~~~ 190 (265)
.+++|+++.|+|++||||||| ++.+.+..++... +.|+..+. .+..+.+++ .+|... + +....
T Consensus 20 gi~~g~~~~i~G~~G~GKTtl~~~~~~~~~~~g~~-------~~yi~~e~--~~~~~~~~~~~~g~~~--~---~~~~~- 84 (230)
T PRK08533 20 GIPAGSLILIEGDESTGKSILSQRLAYGFLQNGYS-------VSYVSTQL--TTTEFIKQMMSLGYDI--N---KKLIS- 84 (230)
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHHHhCCCc-------EEEEeCCC--CHHHHHHHHHHhCCch--H---HHhhc-
Confidence 379999999999999999999 6888887664322 34554221 111222222 122211 0 10000
Q ss_pred cchhHHhcCCCCCccccCCCCCCCCHHHHHHHHHHHHHcc----CCCEEEEeCCCCCc----CHHHHHHHHHHHHHHH
Q psy1503 191 ALQDDFDSLPNGDFTVVGERGASLSGGQKARINLARAVYK----NADIYLLDDPLSAV----DMHVGKHLFEDCISGC 260 (265)
Q Consensus 191 ~l~~~i~~l~~g~~t~vg~~g~~LSgGqrqRialARal~~----~~~illLDEp~s~L----D~~~~~~i~~~~i~~~ 260 (265)
..+.. +.- ...+|+++.++-.+++.+-. +|+++++|||++.+ |+...+.+++ .+..+
T Consensus 85 ---~~l~~--------~~~-~~~~~~~~~~~~~l~~il~~~~~~~~~~lVIDe~t~~l~~~~d~~~~~~l~~-~l~~l 149 (230)
T PRK08533 85 ---GKLLY--------IPV-YPLLSGNSEKRKFLKKLMNTRRFYEKDVIIIDSLSSLISNDASEVAVNDLMA-FFKRI 149 (230)
T ss_pred ---CcEEE--------EEe-cccccChHHHHHHHHHHHHHHHhcCCCEEEEECccHHhcCCcchHHHHHHHH-HHHHH
Confidence 00000 000 02366776666555554433 69999999999999 6665555543 44433
No 435
>PHA02562 46 endonuclease subunit; Provisional
Probab=98.86 E-value=2.6e-09 Score=104.47 Aligned_cols=61 Identities=31% Similarity=0.443 Sum_probs=50.3
Q ss_pred cCCCCCccccCCCC------CCCCHHHHHHHHHHHHHc----------cCCCEEEEeCCC-CCcCHHHHHHHHHHHHHH
Q psy1503 198 SLPNGDFTVVGERG------ASLSGGQKARINLARAVY----------KNADIYLLDDPL-SAVDMHVGKHLFEDCISG 259 (265)
Q Consensus 198 ~l~~g~~t~vg~~g------~~LSgGqrqRialARal~----------~~~~illLDEp~-s~LD~~~~~~i~~~~i~~ 259 (265)
.+|.+.++.+++.| .+||||||||++||||++ .+|+++|||||| ++||+.....+++ .+..
T Consensus 447 ~~~~~~~~~~~~~g~~~~~~~~lS~Ge~~r~~la~~l~~~~~~~~~~~~~~~~lilDEp~~~~ld~~~~~~~~~-~l~~ 524 (562)
T PHA02562 447 TLDEEFNETIKSRGREDFSYASFSQGEKARIDLALLFTWRDVASKVSGVDTNLLILDEVFDGALDAEGTKALLS-ILDS 524 (562)
T ss_pred EechhhhhHHhcCCCCccChhhcChhHHHHHHHHHHHHHHHHHHHhcCCCcCeEEEecccCcccchhHHHHHHH-HHHh
Confidence 34666667777666 789999999999999987 599999999998 7899999888865 4433
No 436
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=98.86 E-value=4.3e-08 Score=76.11 Aligned_cols=99 Identities=29% Similarity=0.392 Sum_probs=68.6
Q ss_pred CCcEEEEEcCCCChHHHHHHHHhcCcCCCc-cEEEEcCeEEEEecCCCCccccHHHHHhcCCcccHHHHHHHHHHhcchh
Q psy1503 116 PKQLACIIGAIGAGKTSLLHIILNELRISS-GKVSLGGTVSYASQEPWIFAATIRQNILFGLPYLRRRYADVIRVCALQD 194 (265)
Q Consensus 116 ~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~-G~i~~~g~i~~v~Q~~~l~~~ti~eni~~~~~~~~~~~~~~~~~~~l~~ 194 (265)
++..+.|+||+|+||||+++.|+..+.... +.+.++. +..........+
T Consensus 1 ~~~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~----------------------- 50 (148)
T smart00382 1 PGEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDG-------EDILEEVLDQLL----------------------- 50 (148)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECC-------EEccccCHHHHH-----------------------
Confidence 367899999999999999999999887665 3333321 110000000000
Q ss_pred HHhcCCCCCccccCCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHH
Q psy1503 195 DFDSLPNGDFTVVGERGASLSGGQKARINLARAVYKNADIYLLDDPLSAVDMHVGKHLF 253 (265)
Q Consensus 195 ~i~~l~~g~~t~vg~~g~~LSgGqrqRialARal~~~~~illLDEp~s~LD~~~~~~i~ 253 (265)
............+++..+..+++|-..+++++++||+..-.+........
T Consensus 51 ---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDei~~~~~~~~~~~~~ 100 (148)
T smart00382 51 ---------LIIVGGKKASGSGELRLRLALALARKLKPDVLILDEITSLLDAEQEALLL 100 (148)
T ss_pred ---------hhhhhccCCCCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHH
Confidence 01122334578899999999999999889999999999999988776553
No 437
>PRK13695 putative NTPase; Provisional
Probab=98.81 E-value=4.4e-09 Score=87.77 Aligned_cols=113 Identities=17% Similarity=0.194 Sum_probs=66.2
Q ss_pred EEEEEcCCCChHHHHHHHHhcCcCCCccEEEEcCeEEEEecCCCCccccHHHHHhcCCcccHHHHHHHHHHhcchhHHhc
Q psy1503 119 LACIIGAIGAGKTSLLHIILNELRISSGKVSLGGTVSYASQEPWIFAATIRQNILFGLPYLRRRYADVIRVCALQDDFDS 198 (265)
Q Consensus 119 ~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g~i~~v~Q~~~l~~~ti~eni~~~~~~~~~~~~~~~~~~~l~~~i~~ 198 (265)
.++|+|++|||||||++.+.+.+.+ .| +.+ .+|+.|+... .+. ..+..... +. .+....+..
T Consensus 2 ~i~ltG~~G~GKTTll~~i~~~l~~-~G-~~~---~g~~~~~~~~-~~~-----~~~~~~~~--~~-----~~~~~~l~~ 63 (174)
T PRK13695 2 KIGITGPPGVGKTTLVLKIAELLKE-EG-YKV---GGFYTEEVRE-GGK-----RIGFKIID--LD-----TGEEGILAR 63 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH-CC-CeE---EEEEcHHHHh-cCC-----ccceEEEE--cC-----CCCeEEccc
Confidence 5799999999999999999887765 46 332 4566664211 000 01110000 00 000000111
Q ss_pred CCCCCccccCCCCCCCCHHHHHHHHHHHHHccCCCEEEEeC--CCCCcCHHHH
Q psy1503 199 LPNGDFTVVGERGASLSGGQKARINLARAVYKNADIYLLDD--PLSAVDMHVG 249 (265)
Q Consensus 199 l~~g~~t~vg~~g~~LSgGqrqRialARal~~~~~illLDE--p~s~LD~~~~ 249 (265)
........++.....+||+++-++.+++....+|+++++|| |+.++|....
T Consensus 64 ~~~~~~~~~~~~~~~lsgle~~~~~l~~~~l~~~~~lllDE~~~~e~~~~~~~ 116 (174)
T PRK13695 64 VGFPSRPRVGKYVVNLEDLERIGIPALERALEEADVIIIDEIGKMELKSPKFV 116 (174)
T ss_pred cCCCCCCceeeEEEehHHHHHHHHHHHHhccCCCCEEEEECCCcchhhhHHHH
Confidence 00001112334456799999999999999999999999999 5556665543
No 438
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=98.76 E-value=1.1e-08 Score=87.10 Aligned_cols=108 Identities=18% Similarity=0.206 Sum_probs=65.0
Q ss_pred EEEEEcCCCChHHHHHHHHhcCcCCCccEEEEcCeEEEEecCCCCccccHHHHHh-----cCC--cccHHHHHHHHHHhc
Q psy1503 119 LACIIGAIGAGKTSLLHIILNELRISSGKVSLGGTVSYASQEPWIFAATIRQNIL-----FGL--PYLRRRYADVIRVCA 191 (265)
Q Consensus 119 ~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g~i~~v~Q~~~l~~~ti~eni~-----~~~--~~~~~~~~~~~~~~~ 191 (265)
+++|+||+|||||||.+.|.+.+ .. +.+.+++++.+..+.+..+... +.. ..+.+.+.+.+....
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l--~~------~~~~v~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~ 72 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQL--GN------PKVVIISQDSYYKDLSHEELEERKNNNYDHPDAFDFDLLISHLQDLK 72 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh--CC------CCeEEEEecccccccccccHHHhccCCCCCCCcccHHHHHHHHHHHH
Confidence 48999999999999999999987 22 2356777776543333222211 111 122222222222221
Q ss_pred chhHHhcCCCCCccccCCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCcCHHH
Q psy1503 192 LQDDFDSLPNGDFTVVGERGASLSGGQKARINLARAVYKNADIYLLDDPLSAVDMHV 248 (265)
Q Consensus 192 l~~~i~~l~~g~~t~vg~~g~~LSgGqrqRialARal~~~~~illLDEp~s~LD~~~ 248 (265)
.+. .+.-+..+.|.|++++..+ .+.+++++|+|.|+...++..
T Consensus 73 ---------~~~--~~~~p~~d~~~~~~~~~~~---~i~~~~~vI~eg~~~~~~~~~ 115 (198)
T cd02023 73 ---------NGK--SVEIPVYDFKTHSRLKETV---TVYPADVIILEGILALYDKEL 115 (198)
T ss_pred ---------CCC--CEeccccccccCcccCCce---ecCCCCEEEEechhhccchhH
Confidence 111 1223345677887776554 567899999999999987643
No 439
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=98.74 E-value=1.5e-08 Score=85.58 Aligned_cols=69 Identities=17% Similarity=0.195 Sum_probs=52.7
Q ss_pred ceeeceEEEcCCcEEEEEcCCCChHHHHHHHHhcCcCCCccEEEEcCe----------EEEEecCCC--Ccc-ccHHHHH
Q psy1503 106 TLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSLGGT----------VSYASQEPW--IFA-ATIRQNI 172 (265)
Q Consensus 106 ~l~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g~----------i~~v~Q~~~--l~~-~ti~eni 172 (265)
..+=+.+.+++|+.++|+||||||||||+++|+++++|+.|.|.+.+. ++++.|.+. .++ .+..+.+
T Consensus 14 ~~~~l~~~v~~g~~i~I~G~tGSGKTTll~aL~~~i~~~~~~i~ied~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 93 (186)
T cd01130 14 QAAYLWLAVEARKNILISGGTGSGKTTLLNALLAFIPPDERIITIEDTAELQLPHPNWVRLVTRPGNVEGSGEVTMADLL 93 (186)
T ss_pred HHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhcCCCCCEEEECCccccCCCCCCEEEEEEecCCCCCCCccCHHHHH
Confidence 344567789999999999999999999999999999999999988652 455554432 232 4677766
Q ss_pred hc
Q psy1503 173 LF 174 (265)
Q Consensus 173 ~~ 174 (265)
..
T Consensus 94 ~~ 95 (186)
T cd01130 94 RS 95 (186)
T ss_pred HH
Confidence 54
No 440
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=98.73 E-value=8.6e-09 Score=98.90 Aligned_cols=63 Identities=13% Similarity=0.246 Sum_probs=51.5
Q ss_pred ceeeceEEEcCCcEEEEEcCCCChHHHHHHHHhcCcCCCccEEEEcCeEEEEecCCCCccccHHHHHhc
Q psy1503 106 TLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSLGGTVSYASQEPWIFAATIRQNILF 174 (265)
Q Consensus 106 ~l~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g~i~~v~Q~~~l~~~ti~eni~~ 174 (265)
++++.++.+++|.+++++||||+||||++..|++.+.+..|.. +|+++.+|+ |..+..|++.+
T Consensus 245 ~~~~~~~~~~~g~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~~----kV~LI~~Dt--~RigA~EQLr~ 307 (484)
T PRK06995 245 VLDSEDALLDRGGVFALMGPTGVGKTTTTAKLAARCVMRHGAS----KVALLTTDS--YRIGGHEQLRI 307 (484)
T ss_pred hccCccccccCCcEEEEECCCCccHHHHHHHHHHHHHHhcCCC----eEEEEeCCc--cchhHHHHHHH
Confidence 3556667778899999999999999999999999887777743 478999987 55677888864
No 441
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=98.72 E-value=2.5e-08 Score=90.91 Aligned_cols=41 Identities=20% Similarity=0.452 Sum_probs=36.5
Q ss_pred ceEEEcCCcEEEEEcCCCChHHHHHHHHhcCcCCCccEEEE
Q psy1503 110 VSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSL 150 (265)
Q Consensus 110 isl~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~ 150 (265)
+++.++.|+.++|+||+|||||||+++|++++++..|.+.+
T Consensus 137 l~~~v~~~~~ili~G~tGsGKTTll~al~~~~~~~~~iv~i 177 (308)
T TIGR02788 137 LRLAIASRKNIIISGGTGSGKTTFLKSLVDEIPKDERIITI 177 (308)
T ss_pred HHHHhhCCCEEEEECCCCCCHHHHHHHHHccCCccccEEEE
Confidence 45778899999999999999999999999999998876544
No 442
>PRK06002 fliI flagellum-specific ATP synthase; Validated
Probab=98.65 E-value=8.4e-08 Score=91.15 Aligned_cols=63 Identities=16% Similarity=0.197 Sum_probs=55.2
Q ss_pred CcEEEEeEEEEeCCCCCCcceeeceEEEcCCcEEEEEcCCCChHHHHHHHHhcCcCCCccEEEEcC
Q psy1503 87 GHVSLDNVTAQWSLQNADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSLGG 152 (265)
Q Consensus 87 ~~i~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g 152 (265)
+.++.++++..|.. +..+++.++ +|.+|++++|+||+|||||||+++|.++.+|+.|.|.+.|
T Consensus 138 ~~~~r~~v~~~l~T--Gi~aID~L~-~I~~Gqri~I~G~SGsGKTTLL~~Ia~l~~pd~gvv~liG 200 (450)
T PRK06002 138 PAMTRARVETGLRT--GVRVIDIFT-PLCAGQRIGIFAGSGVGKSTLLAMLARADAFDTVVIALVG 200 (450)
T ss_pred CCeEeecceEEcCC--CcEEeeeec-eecCCcEEEEECCCCCCHHHHHHHHhCCCCCCeeeeeecc
Confidence 46889999999864 356888885 9999999999999999999999999999999999887743
No 443
>PF13304 AAA_21: AAA domain; PDB: 3QKS_B 1US8_B 1F2U_B 1F2T_B 3QKT_A 1II8_B 3QKR_B 3QKU_A.
Probab=98.63 E-value=4.1e-08 Score=83.58 Aligned_cols=43 Identities=28% Similarity=0.438 Sum_probs=36.1
Q ss_pred CCCCHHHHHHHHHHHHHccCC---CEEEEeCCCCCcCHHHHHHHHH
Q psy1503 212 ASLSGGQKARINLARAVYKNA---DIYLLDDPLSAVDMHVGKHLFE 254 (265)
Q Consensus 212 ~~LSgGqrqRialARal~~~~---~illLDEp~s~LD~~~~~~i~~ 254 (265)
..+|.|++|.+.|+-+++..+ .++++|||-++|.+...+.+++
T Consensus 235 ~~~S~G~~~~l~l~~~l~~~~~~~~illiDEpE~~LHp~~q~~l~~ 280 (303)
T PF13304_consen 235 SSLSSGEKRLLSLLSLLLSAKKNGSILLIDEPENHLHPSWQRKLIE 280 (303)
T ss_dssp S---HHHHHHHHHHHHHHTTTTT-SEEEEESSSTTSSHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHhCcCCCCeEEEecCCcCCCCHHHHHHHHH
Confidence 456999999999998888766 8999999999999999998874
No 444
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=98.62 E-value=1.3e-07 Score=80.82 Aligned_cols=30 Identities=20% Similarity=0.484 Sum_probs=25.6
Q ss_pred EEEEEcCCCChHHHHHHHHhcCcCCC-ccEE
Q psy1503 119 LACIIGAIGAGKTSLLHIILNELRIS-SGKV 148 (265)
Q Consensus 119 ~~~ivG~~GsGKSTLl~~l~g~~~~~-~G~i 148 (265)
++.|+||+||||||+++.|++.+.+. .|.|
T Consensus 3 lilI~GptGSGKTTll~~ll~~~~~~~~~~i 33 (198)
T cd01131 3 LVLVTGPTGSGKSTTLAAMIDYINKNKTHHI 33 (198)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhhhcCCcEE
Confidence 68999999999999999999988754 4554
No 445
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=98.60 E-value=2e-07 Score=77.88 Aligned_cols=47 Identities=6% Similarity=-0.029 Sum_probs=34.3
Q ss_pred ccCCCCCCCCHHHHH------HHHHHHHHccCCCEEEEeCCCCCcC---HHHHHHH
Q psy1503 206 VVGERGASLSGGQKA------RINLARAVYKNADIYLLDDPLSAVD---MHVGKHL 252 (265)
Q Consensus 206 ~vg~~g~~LSgGqrq------RialARal~~~~~illLDEp~s~LD---~~~~~~i 252 (265)
.+......+|+||+| ....+.+...+|+++++|||++.+| ......+
T Consensus 64 ~~d~~~~~~s~~~~~~~~~~~~~i~~~~~~~~~~~lviD~~~~~~~~~~~~~~~~i 119 (187)
T cd01124 64 IVDADPDEIGPAESSLRLELIQRLKDAIEEFKAKRVVIDSVSGLLLMEQSTARLEI 119 (187)
T ss_pred EEecCccccchhhhhhhHHHHHHHHHHHHHhCCCEEEEeCcHHHhhcChHHHHHHH
Confidence 344556788999998 4444444567999999999999999 5544444
No 446
>PRK07196 fliI flagellum-specific ATP synthase; Validated
Probab=98.60 E-value=6.8e-08 Score=91.58 Aligned_cols=70 Identities=19% Similarity=0.141 Sum_probs=56.7
Q ss_pred CcceeeceEEEcCCcEEEEEcCCCChHHHHHHHHhcCcCCCccEE---EEcC-------------------eEEEEecCC
Q psy1503 104 DLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKV---SLGG-------------------TVSYASQEP 161 (265)
Q Consensus 104 ~~~l~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i---~~~g-------------------~i~~v~Q~~ 161 (265)
..+++++ |++.+|++++|+|+||||||||+++|+|..+++.+.+ -.++ .+++++|+.
T Consensus 143 i~aID~l-l~I~~GQ~igI~G~sGaGKSTLl~~I~g~~~~dv~vig~IGerg~ev~ef~~~~l~~~gl~rsvvv~~~~d~ 221 (434)
T PRK07196 143 VNAINGL-LTIGKGQRVGLMAGSGVGKSVLLGMITRYTQADVVVVGLIGERGREVKEFIEHSLQAAGMAKSVVVAAPADE 221 (434)
T ss_pred eeeccce-EeEecceEEEEECCCCCCccHHHHHHhcccCCCeEEEEEEeeecHHHHHHHHHHhhhcccceEEEEEecCCC
Confidence 4579999 9999999999999999999999999999998886433 2222 288999998
Q ss_pred CCcc-ccHHHHHhc
Q psy1503 162 WIFA-ATIRQNILF 174 (265)
Q Consensus 162 ~l~~-~ti~eni~~ 174 (265)
..+. .++.+++.+
T Consensus 222 s~~~rl~a~e~a~~ 235 (434)
T PRK07196 222 SPLMRIKATELCHA 235 (434)
T ss_pred ChhhhHHHHHHHHH
Confidence 7764 577877653
No 447
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=98.60 E-value=2.5e-07 Score=74.60 Aligned_cols=101 Identities=18% Similarity=0.188 Sum_probs=61.1
Q ss_pred EEEEEcCCCChHHHHHHHHhcCcCCCccEEEEcCeEEEEecCCCCccccHHHHHhcCCcccHHHHHHHHHHhcchhHHhc
Q psy1503 119 LACIIGAIGAGKTSLLHIILNELRISSGKVSLGGTVSYASQEPWIFAATIRQNILFGLPYLRRRYADVIRVCALQDDFDS 198 (265)
Q Consensus 119 ~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g~i~~v~Q~~~l~~~ti~eni~~~~~~~~~~~~~~~~~~~l~~~i~~ 198 (265)
++.|+||+|+||||+++.+++...+..|. +.|++.+...- ...++... ......
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~~~~~~~------v~~~~~e~~~~--~~~~~~~~------------~~~~~~------ 54 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNIATKGGK------VVYVDIEEEIE--ELTERLIG------------ESLKGA------ 54 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHHHhcCCE------EEEEECCcchH--HHHHHHhh------------hhhccc------
Confidence 47899999999999999999988764443 55666543211 11111100 000000
Q ss_pred CCCCCccccCCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCcCHH
Q psy1503 199 LPNGDFTVVGERGASLSGGQKARINLARAVYKNADIYLLDDPLSAVDMH 247 (265)
Q Consensus 199 l~~g~~t~vg~~g~~LSgGqrqRialARal~~~~~illLDEp~s~LD~~ 247 (265)
. +....+.......+..+.++++.+++...+|+++++||+++-++..
T Consensus 55 -~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lviDe~~~~~~~~ 101 (165)
T cd01120 55 -L-DNLIIVFATADDPAAARLLSKAERLRERGGDDLIILDELTRLVRAL 101 (165)
T ss_pred -c-ccEEEEEcCCCCCcHHHHHHHHHHHHhCCCCEEEEEEcHHHHHHHH
Confidence 0 0011112222344566667889999999999999999999655443
No 448
>PRK01889 GTPase RsgA; Reviewed
Probab=98.58 E-value=5.6e-08 Score=90.43 Aligned_cols=71 Identities=14% Similarity=0.208 Sum_probs=60.6
Q ss_pred ceeeceEEEcCCcEEEEEcCCCChHHHHHHHHhcCcCCCccEEEEcC----------eEEEEecCCCCccccHHHHHhcC
Q psy1503 106 TLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSLGG----------TVSYASQEPWIFAATIRQNILFG 175 (265)
Q Consensus 106 ~l~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g----------~i~~v~Q~~~l~~~ti~eni~~~ 175 (265)
.++.+.-.+++|+.++|+|+||+|||||++.|+|...+..|+|.+++ .+.+++|..++++.+...|+.+.
T Consensus 184 gl~~L~~~L~~g~~~~lvG~sgvGKStLin~L~g~~~~~~G~i~~~~~~g~~tt~~~~l~~l~~~~~l~DtpG~~~~~l~ 263 (356)
T PRK01889 184 GLDVLAAWLSGGKTVALLGSSGVGKSTLVNALLGEEVQKTGAVREDDSKGRHTTTHRELHPLPSGGLLIDTPGMRELQLW 263 (356)
T ss_pred cHHHHHHHhhcCCEEEEECCCCccHHHHHHHHHHhcccceeeEEECCCCCcchhhhccEEEecCCCeecCCCchhhhccc
Confidence 35666777889999999999999999999999999999999998865 38899999999987667676654
Q ss_pred C
Q psy1503 176 L 176 (265)
Q Consensus 176 ~ 176 (265)
.
T Consensus 264 ~ 264 (356)
T PRK01889 264 D 264 (356)
T ss_pred C
Confidence 3
No 449
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=98.55 E-value=8.9e-08 Score=94.17 Aligned_cols=48 Identities=19% Similarity=0.222 Sum_probs=41.1
Q ss_pred CCCCHHHHHHHHHHHHHccC----CCEEEEeCCCCCcCHHHHHHHHHHHHHHH
Q psy1503 212 ASLSGGQKARINLARAVYKN----ADIYLLDDPLSAVDMHVGKHLFEDCISGC 260 (265)
Q Consensus 212 ~~LSgGqrqRialARal~~~----~~illLDEp~s~LD~~~~~~i~~~~i~~~ 260 (265)
..|||||+||++|||+++.. |+++|||||+++||+.+...+.+ .+..+
T Consensus 439 ~~lSgGe~~rv~la~~l~~~~~~~~~~lilDEp~~gld~~~~~~~~~-~l~~l 490 (563)
T TIGR00634 439 KVASGGELSRVMLALKVVLSSSAAVTTLIFDEVDVGVSGETAQAIAK-KLAQL 490 (563)
T ss_pred hhcCHhHHHHHHHHHHHhhCCCCCCCEEEEECCCCCCCHHHHHHHHH-HHHHH
Confidence 46899999999999999875 69999999999999999888765 44443
No 450
>PRK10869 recombination and repair protein; Provisional
Probab=98.55 E-value=1e-07 Score=93.49 Aligned_cols=47 Identities=19% Similarity=0.203 Sum_probs=40.6
Q ss_pred CCCHHHHHHHHHHHHHcc----CCCEEEEeCCCCCcCHHHHHHHHHHHHHHH
Q psy1503 213 SLSGGQKARINLARAVYK----NADIYLLDDPLSAVDMHVGKHLFEDCISGC 260 (265)
Q Consensus 213 ~LSgGqrqRialARal~~----~~~illLDEp~s~LD~~~~~~i~~~~i~~~ 260 (265)
.+||||+|||+|||+++. +|+++|||||+++||..+...+.+ .+..+
T Consensus 430 ~lSgGe~~Ri~LA~~~~~~~~~~~~~li~DEpd~gld~~~~~~v~~-~l~~l 480 (553)
T PRK10869 430 VASGGELSRIALAIQVITARKMETPALIFDEVDVGISGPTAAVVGK-LLRQL 480 (553)
T ss_pred hCCHHHHHHHHHHHHHHhccCCCCCEEEEECCCCCCCHHHHHHHHH-HHHHH
Confidence 479999999999999996 589999999999999999988765 44433
No 451
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=98.48 E-value=8.4e-08 Score=82.18 Aligned_cols=100 Identities=18% Similarity=0.271 Sum_probs=60.8
Q ss_pred EEEEEcCCCChHHHHHHHHhcCcCCCccEEEEcCeEEEEecCCCCccccH--HHHHh---c-CCcccHHHHHHHHHHhcc
Q psy1503 119 LACIIGAIGAGKTSLLHIILNELRISSGKVSLGGTVSYASQEPWIFAATI--RQNIL---F-GLPYLRRRYADVIRVCAL 192 (265)
Q Consensus 119 ~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g~i~~v~Q~~~l~~~ti--~eni~---~-~~~~~~~~~~~~~~~~~l 192 (265)
.++|+||+|||||||++.+.+.+.+..|...+...+++..+.+|+...++ .+++. . +......++..+...+++
T Consensus 3 ~i~i~G~~GsGKTTll~~l~~~l~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~L 82 (199)
T TIGR00101 3 KIGVAGPVGSGKTALIEALTRALRQKYQLAVITNDIYTQEDAEFLVKNSALPPERILGVETGGCPHTAIREDASMNLEAV 82 (199)
T ss_pred EEEEECCCCCCHHHHHHHHHHhhCcCCcEEEEeCCcCChhHHHHHHHcCCCCcCceehhhcCCCccceeccCHHHHHHHH
Confidence 68999999999999999999998876554434333333333333322110 12221 1 122222334444556677
Q ss_pred hhHHhcCCCCCccccCCCCCCCCHHH
Q psy1503 193 QDDFDSLPNGDFTVVGERGASLSGGQ 218 (265)
Q Consensus 193 ~~~i~~l~~g~~t~vg~~g~~LSgGq 218 (265)
.+.+..++..+...|+..|..+|.--
T Consensus 83 ~~l~~~~~~~D~iiIEt~G~~l~~~~ 108 (199)
T TIGR00101 83 AEMEARFPPLEMVFIESGGDNLSATF 108 (199)
T ss_pred HHHHhcCCCCCEEEEECCCCCccccc
Confidence 77766777778888888887666544
No 452
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=98.46 E-value=1.3e-07 Score=81.17 Aligned_cols=44 Identities=23% Similarity=0.214 Sum_probs=37.1
Q ss_pred EcCCcEEEEEcCCCChHHHHHHHHhcCcCCCccEEEEcCeEEEEecCCCCcc
Q psy1503 114 FKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSLGGTVSYASQEPWIFA 165 (265)
Q Consensus 114 i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g~i~~v~Q~~~l~~ 165 (265)
-++|++++|+||||||||||++.|.+.+++ +.+++++|+.+.++
T Consensus 3 ~~~g~vi~I~G~sGsGKSTl~~~l~~~l~~--------~~~~~i~~D~~~~~ 46 (207)
T TIGR00235 3 KPKGIIIGIGGGSGSGKTTVARKIYEQLGK--------LEIVIISQDNYYKD 46 (207)
T ss_pred CCCeEEEEEECCCCCCHHHHHHHHHHHhcc--------cCCeEecccccccC
Confidence 368999999999999999999999998865 34678888887654
No 453
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=98.44 E-value=8.2e-07 Score=82.22 Aligned_cols=99 Identities=17% Similarity=0.242 Sum_probs=60.2
Q ss_pred EcCCcEEEEEcCCCChHHHHHHHHhcCcCC-CccEEEEcCeEEEEecCCCCccccHHHHHhcCCcccHHHHHHHHHHhcc
Q psy1503 114 FKPKQLACIIGAIGAGKTSLLHIILNELRI-SSGKVSLGGTVSYASQEPWIFAATIRQNILFGLPYLRRRYADVIRVCAL 192 (265)
Q Consensus 114 i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~-~~G~i~~~g~i~~v~Q~~~l~~~ti~eni~~~~~~~~~~~~~~~~~~~l 192 (265)
.+++..+.|+||+||||||+++.+++.+.+ .++.|.. +. +|. .+..+.. .+
T Consensus 119 ~~~~g~ili~G~tGSGKTT~l~al~~~i~~~~~~~i~t------iE-dp~----------E~~~~~~---------~~-- 170 (343)
T TIGR01420 119 ERPRGLILVTGPTGSGKSTTLASMIDYINKNAAGHIIT------IE-DPI----------EYVHRNK---------RS-- 170 (343)
T ss_pred hhcCcEEEEECCCCCCHHHHHHHHHHhhCcCCCCEEEE------Ec-CCh----------hhhccCc---------cc--
Confidence 457899999999999999999999998764 3455422 21 111 0000000 00
Q ss_pred hhHHhcCCCCCccccCCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHH
Q psy1503 193 QDDFDSLPNGDFTVVGERGASLSGGQKARINLARAVYKNADIYLLDDPLSAVDMHVGKHLFEDCI 257 (265)
Q Consensus 193 ~~~i~~l~~g~~t~vg~~g~~LSgGqrqRialARal~~~~~illLDEp~s~LD~~~~~~i~~~~i 257 (265)
.+. ...+|....+ ---++++||-.+||++++||+. |..+....++.+.
T Consensus 171 --~i~------q~evg~~~~~------~~~~l~~~lr~~pd~i~vgEir---d~~~~~~~l~aa~ 218 (343)
T TIGR01420 171 --LIN------QREVGLDTLS------FANALRAALREDPDVILIGEMR---DLETVELALTAAE 218 (343)
T ss_pred --eEE------ccccCCCCcC------HHHHHHHhhccCCCEEEEeCCC---CHHHHHHHHHHHH
Confidence 000 0012221111 2345788999999999999997 8888776655443
No 454
>PRK01156 chromosome segregation protein; Provisional
Probab=98.43 E-value=2.7e-07 Score=95.27 Aligned_cols=45 Identities=24% Similarity=0.431 Sum_probs=40.3
Q ss_pred CCCCCCHHHHHHHHH------HHHHccCCCEEEEeCCCCCcCHHHHHHHHH
Q psy1503 210 RGASLSGGQKARINL------ARAVYKNADIYLLDDPLSAVDMHVGKHLFE 254 (265)
Q Consensus 210 ~g~~LSgGqrqRial------ARal~~~~~illLDEp~s~LD~~~~~~i~~ 254 (265)
++..|||||++|++| ||+++.+|++++|||||++||+.....+.+
T Consensus 798 ~~~~lS~G~~~~~~la~rlala~~l~~~~~~lilDEpt~~lD~~~~~~l~~ 848 (895)
T PRK01156 798 GIDSLSGGEKTAVAFALRVAVAQFLNNDKSLLIMDEPTAFLDEDRRTNLKD 848 (895)
T ss_pred ccccCCHhHHHHHHHHHHHHHHHHhccCCCeEEEeCCCCcCCHHHHHHHHH
Confidence 467899999999975 599999999999999999999999888655
No 455
>TIGR00618 sbcc exonuclease SbcC. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.38 E-value=4.9e-07 Score=94.86 Aligned_cols=51 Identities=20% Similarity=0.251 Sum_probs=43.9
Q ss_pred CCCCCCCHHHHHHHHHHHHHcc----------CCCEEEEeCCCCCcCHHHHHHHHHHHHHHH
Q psy1503 209 ERGASLSGGQKARINLARAVYK----------NADIYLLDDPLSAVDMHVGKHLFEDCISGC 260 (265)
Q Consensus 209 ~~g~~LSgGqrqRialARal~~----------~~~illLDEp~s~LD~~~~~~i~~~~i~~~ 260 (265)
....+|||||++|++||+||+. +|+++||||||++||+.+...+++ ++..+
T Consensus 946 r~~~~lSgGe~~~~~la~al~ls~~~~~~~~~~~~~l~lDEp~~~LD~~~~~~~~~-~l~~l 1006 (1042)
T TIGR00618 946 RPSATLSGGETFLASLSLALALADLLSTSGGTVLDSLFIDEGFGSLDEDSLDRAIG-ILDAI 1006 (1042)
T ss_pred CCcccCCHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEecCCCCCCCHHHHHHHHH-HHHHH
Confidence 3567899999999999999985 799999999999999999888866 44433
No 456
>PRK03918 chromosome segregation protein; Provisional
Probab=98.37 E-value=4.8e-07 Score=93.07 Aligned_cols=50 Identities=24% Similarity=0.386 Sum_probs=41.1
Q ss_pred CCCCCCHHHHH------HHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHH
Q psy1503 210 RGASLSGGQKA------RINLARAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGC 260 (265)
Q Consensus 210 ~g~~LSgGqrq------RialARal~~~~~illLDEp~s~LD~~~~~~i~~~~i~~~ 260 (265)
....|||||+| |+||||+++.+|+++||||||++||+.....+.+ ++..+
T Consensus 785 ~~~~lS~G~~~~~~la~rlal~~~l~~~~~~lilDEp~~~lD~~~~~~l~~-~l~~~ 840 (880)
T PRK03918 785 PLTFLSGGERIALGLAFRLALSLYLAGNIPLLILDEPTPFLDEERRRKLVD-IMERY 840 (880)
T ss_pred ChhhCCHhHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCcccCHHHHHHHHH-HHHHH
Confidence 34679999999 5666678899999999999999999999988865 34333
No 457
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=98.36 E-value=5.6e-07 Score=94.34 Aligned_cols=51 Identities=22% Similarity=0.325 Sum_probs=44.8
Q ss_pred CCCCCCCHHHHHHHHHHHHHcc--------CCCEEEEeCCCCCcCHHHHHHHHHHHHHHH
Q psy1503 209 ERGASLSGGQKARINLARAVYK--------NADIYLLDDPLSAVDMHVGKHLFEDCISGC 260 (265)
Q Consensus 209 ~~g~~LSgGqrqRialARal~~--------~~~illLDEp~s~LD~~~~~~i~~~~i~~~ 260 (265)
....+|||||+++++|||||.. +|+++||||||++||+.+...+++ .+..+
T Consensus 945 r~~~~LSgGe~~~~~la~al~~s~~~s~~~~~~~l~lDEp~~~lD~~~~~~~~~-~l~~l 1003 (1047)
T PRK10246 945 RDTRTLSGGESFLVSLALALALSDLVSHKTRIDSLFLDEGFGTLDSETLDTALD-ALDAL 1003 (1047)
T ss_pred CCcccCCHHHHHHHHHHHHHHhhhhhhcCCCCCEEEEeCCCCcCCHHHHHHHHH-HHHHH
Confidence 4568899999999999999995 899999999999999999988876 45444
No 458
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=98.33 E-value=1e-06 Score=81.99 Aligned_cols=75 Identities=24% Similarity=0.272 Sum_probs=49.4
Q ss_pred cCCcEEEEEcCCCChHHHHHHHHhcCcCCC--cc-EEEE-cC-----------eEEEEecCCC-----CccccHHHHHhc
Q psy1503 115 KPKQLACIIGAIGAGKTSLLHIILNELRIS--SG-KVSL-GG-----------TVSYASQEPW-----IFAATIRQNILF 174 (265)
Q Consensus 115 ~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~--~G-~i~~-~g-----------~i~~v~Q~~~-----l~~~ti~eni~~ 174 (265)
++|..+.|+||+||||||++++|++++.++ .+ .|.. .. ..+++.|... -|...+++++..
T Consensus 132 ~~~glilI~GpTGSGKTTtL~aLl~~i~~~~~~~~~Ivt~EdpiE~~~~~~~~~~~~v~Q~~v~~~~~~~~~~l~~aLR~ 211 (358)
T TIGR02524 132 PQEGIVFITGATGSGKSTLLAAIIRELAEAPDSHRKILTYEAPIEFVYDEIETISASVCQSEIPRHLNNFAAGVRNALRR 211 (358)
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHHHHhhcCCCCcEEEEeCCCceEeccccccccceeeeeeccccccCHHHHHHHHhcc
Confidence 589999999999999999999999998532 33 4422 11 1466777632 355677777664
Q ss_pred CCc-------ccHHHHHHHHHH
Q psy1503 175 GLP-------YLRRRYADVIRV 189 (265)
Q Consensus 175 ~~~-------~~~~~~~~~~~~ 189 (265)
... .+.+.+..++++
T Consensus 212 ~Pd~i~vGEiRd~et~~~al~a 233 (358)
T TIGR02524 212 KPHAILVGEARDAETISAALEA 233 (358)
T ss_pred CCCEEeeeeeCCHHHHHHHHHH
Confidence 322 234445556665
No 459
>PRK07721 fliI flagellum-specific ATP synthase; Validated
Probab=98.33 E-value=5.7e-07 Score=85.71 Aligned_cols=48 Identities=21% Similarity=0.316 Sum_probs=44.1
Q ss_pred CcceeeceEEEcCCcEEEEEcCCCChHHHHHHHHhcCcCCCccEEEEcC
Q psy1503 104 DLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSLGG 152 (265)
Q Consensus 104 ~~~l~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g 152 (265)
..+++++ |++.+|++++|+|+||+|||||+++|+|..+|+.|.|.+.|
T Consensus 146 ~~vid~l-~~i~~Gq~i~I~G~sG~GKStLl~~I~~~~~~~~gvI~~~G 193 (438)
T PRK07721 146 VRAIDSL-LTVGKGQRVGIFAGSGVGKSTLMGMIARNTSADLNVIALIG 193 (438)
T ss_pred hhhhhee-eeecCCcEEEEECCCCCCHHHHHHHHhcccCCCeEEEEEEe
Confidence 4579999 99999999999999999999999999999999999887643
No 460
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=98.33 E-value=5.5e-07 Score=94.56 Aligned_cols=50 Identities=26% Similarity=0.246 Sum_probs=42.6
Q ss_pred CCCCCCCHHHHHHHHHHHHH----ccCCCEEEEeCCCCCcCHHHHHHHHHHHHHH
Q psy1503 209 ERGASLSGGQKARINLARAV----YKNADIYLLDDPLSAVDMHVGKHLFEDCISG 259 (265)
Q Consensus 209 ~~g~~LSgGqrqRialARal----~~~~~illLDEp~s~LD~~~~~~i~~~~i~~ 259 (265)
..+..||||||||++|||++ +.+|+++|||||+++||+.....+.+ +|..
T Consensus 1085 ~~~~~lS~g~~~~~~l~~~~~~~~~~~~~~~~lDE~~~~ld~~~~~~~~~-~~~~ 1138 (1179)
T TIGR02168 1085 QNLSLLSGGEKALTALALLFAIFKVKPAPFCILDEVDAPLDDANVERFAN-LLKE 1138 (1179)
T ss_pred ccccccCccHHHHHHHHHHHHHHccCCCCeEEecCccccccHHHHHHHHH-HHHH
Confidence 45678999999999999998 47789999999999999999888755 4433
No 461
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=98.33 E-value=6.9e-07 Score=62.16 Aligned_cols=38 Identities=32% Similarity=0.521 Sum_probs=29.7
Q ss_pred eeeceEEEcC-CcEEEEEcCCCChHHHHHHHHhcCcCCC
Q psy1503 107 LNAVSITFKP-KQLACIIGAIGAGKTSLLHIILNELRIS 144 (265)
Q Consensus 107 l~~isl~i~~-G~~~~ivG~~GsGKSTLl~~l~g~~~~~ 144 (265)
+++..+++.+ |+.+.|+||||||||||+.+|.=.+-+.
T Consensus 12 f~~~~~~~~~~g~~tli~G~nGsGKSTllDAi~~~L~~~ 50 (62)
T PF13555_consen 12 FDGETIDFDPRGDVTLITGPNGSGKSTLLDAIQTVLYGN 50 (62)
T ss_pred cCCeEEeecCCCcEEEEECCCCCCHHHHHHHHHHHHcCC
Confidence 3445677775 5799999999999999999987655544
No 462
>COG3910 Predicted ATPase [General function prediction only]
Probab=98.31 E-value=2.9e-06 Score=71.69 Aligned_cols=122 Identities=20% Similarity=0.266 Sum_probs=65.5
Q ss_pred cEEEEEcCCCChHHHHHHHHhcCc--CCCccEEEEcCeEEEEecCCCCccccHHHHHhcCC--cc------cHHHHHHHH
Q psy1503 118 QLACIIGAIGAGKTSLLHIILNEL--RISSGKVSLGGTVSYASQEPWIFAATIRQNILFGL--PY------LRRRYADVI 187 (265)
Q Consensus 118 ~~~~ivG~~GsGKSTLl~~l~g~~--~~~~G~i~~~g~i~~v~Q~~~l~~~ti~eni~~~~--~~------~~~~~~~~~ 187 (265)
-++.|+|.||+||||||-+|.-.+ .+..|.=.+.+.+ + .-...+.+++.+.. +. ..+..-.+.
T Consensus 38 pIT~i~GENGsGKSTLLEaiA~~~~~n~aGg~~n~~~~~-~------~s~s~l~~~~k~~~~~k~~~g~FlRAEs~yn~a 110 (233)
T COG3910 38 PITFITGENGSGKSTLLEAIAAGMGFNAAGGGKNFKGEL-D------ASHSALVDYAKLHKRKKPPIGFFLRAESFYNVA 110 (233)
T ss_pred ceEEEEcCCCccHHHHHHHHHhhccccccCCCcCcCccc-c------cccchHHHhHHHhhcCCCCcceEEehhHHHHHH
Confidence 489999999999999999885433 2333322222210 0 11123444544321 11 011111222
Q ss_pred HHhcchhHHhcCCCCCccccCCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHH
Q psy1503 188 RVCALQDDFDSLPNGDFTVVGERGASLSGGQKARINLARAVYKNADIYLLDDPLSAVDMHVGKHLFE 254 (265)
Q Consensus 188 ~~~~l~~~i~~l~~g~~t~vg~~g~~LSgGqrqRialARal~~~~~illLDEp~s~LD~~~~~~i~~ 254 (265)
. .+ +++..-. + .-+..-...|-|+-----+.|.+ .+..|||||||-|+|-+.-+-.++.
T Consensus 111 s--~~-De~~~e~-~---~~~~sLh~~SHGEsf~~i~~~rf-~~~GiYiLDEPEa~LSp~RQlella 169 (233)
T COG3910 111 S--YL-DEADGEA-N---YGGRSLHHMSHGESFLAIFHNRF-NGQGIYILDEPEAALSPSRQLELLA 169 (233)
T ss_pred H--HH-Hhhhhhc-c---cCCcchhhhccchHHHHHHHHHh-ccCceEEecCccccCCHHHHHHHHH
Confidence 1 11 1111000 0 00112245688887766677766 6789999999999999987665543
No 463
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=98.28 E-value=1.2e-05 Score=70.06 Aligned_cols=111 Identities=16% Similarity=0.097 Sum_probs=65.9
Q ss_pred EEcCCcEEEEEcCCCChHHHHHHHHhc-CcCCCccEEEEcCeEEEEecCCCCccccHHHHHh-cCCcccHHHHHHHHHHh
Q psy1503 113 TFKPKQLACIIGAIGAGKTSLLHIILN-ELRISSGKVSLGGTVSYASQEPWIFAATIRQNIL-FGLPYLRRRYADVIRVC 190 (265)
Q Consensus 113 ~i~~G~~~~ivG~~GsGKSTLl~~l~g-~~~~~~G~i~~~g~i~~v~Q~~~l~~~ti~eni~-~~~~~~~~~~~~~~~~~ 190 (265)
-+++|.++.|.|++|||||||...++- ... .| ..+.|+..+.. ...+.+++. ++....+ ... .
T Consensus 21 G~~~g~~~~i~G~~GsGKt~l~~~~~~~~~~--~g-----~~~~y~~~e~~--~~~~~~~~~~~g~~~~~-----~~~-~ 85 (234)
T PRK06067 21 GIPFPSLILIEGDHGTGKSVLSQQFVYGALK--QG-----KKVYVITTENT--SKSYLKQMESVKIDISD-----FFL-W 85 (234)
T ss_pred CCcCCcEEEEECCCCCChHHHHHHHHHHHHh--CC-----CEEEEEEcCCC--HHHHHHHHHHCCCChhH-----HHh-C
Confidence 589999999999999999999988743 222 22 23556665421 122333322 3321111 000 0
Q ss_pred cchhHHhcCCCCCccccCCCCCCCCHHHHHHHHHHHHHcc--CCCEEEEeCCCCCcCH
Q psy1503 191 ALQDDFDSLPNGDFTVVGERGASLSGGQKARINLARAVYK--NADIYLLDDPLSAVDM 246 (265)
Q Consensus 191 ~l~~~i~~l~~g~~t~vg~~g~~LSgGqrqRialARal~~--~~~illLDEp~s~LD~ 246 (265)
+....+...+ +.....|.++++.+..++..+. +|+++++|||++.+|.
T Consensus 86 g~l~i~~~~~--------~~~~~~~~~~~~ll~~l~~~i~~~~~~~iviDs~t~~~~~ 135 (234)
T PRK06067 86 GYLRIFPLNT--------EGFEWNSTLANKLLELIIEFIKSKREDVIIIDSLTIFATY 135 (234)
T ss_pred CCceEEeccc--------cccccCcchHHHHHHHHHHHHHhcCCCEEEEecHHHHHhc
Confidence 1111111111 1223457788999999999987 9999999999965443
No 464
>TIGR00611 recf recF protein. All proteins in this family for which functions are known are DNA binding proteins that assist the filamentation of RecA onto DNA for the initiation of recombination or recombinational repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.27 E-value=9.8e-07 Score=82.40 Aligned_cols=45 Identities=31% Similarity=0.232 Sum_probs=41.2
Q ss_pred CCCCHHHHHHHHHHHHHcc---------CCCEEEEeCCCCCcCHHHHHHHHHHH
Q psy1503 212 ASLSGGQKARINLARAVYK---------NADIYLLDDPLSAVDMHVGKHLFEDC 256 (265)
Q Consensus 212 ~~LSgGqrqRialARal~~---------~~~illLDEp~s~LD~~~~~~i~~~~ 256 (265)
..+|.||+++++||.+|+. +|+|+|||||+|+||+.....+++..
T Consensus 274 ~~~S~Gq~r~l~lal~la~~~~l~~~~~~~pilLLDD~~seLD~~~r~~l~~~l 327 (365)
T TIGR00611 274 DFASQGQLRSLALALRLAEGELLREEGGEYPILLLDDVASELDDQRRRLLAELL 327 (365)
T ss_pred HhcChhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEcCchhccCHHHHHHHHHHH
Confidence 4699999999999999999 99999999999999999998887643
No 465
>PRK00300 gmk guanylate kinase; Provisional
Probab=98.26 E-value=7.2e-07 Score=76.00 Aligned_cols=28 Identities=29% Similarity=0.465 Sum_probs=26.5
Q ss_pred cCCcEEEEEcCCCChHHHHHHHHhcCcC
Q psy1503 115 KPKQLACIIGAIGAGKTSLLHIILNELR 142 (265)
Q Consensus 115 ~~G~~~~ivG~~GsGKSTLl~~l~g~~~ 142 (265)
++|++++|+||+|||||||+++|++.++
T Consensus 3 ~~g~~i~i~G~sGsGKstl~~~l~~~~~ 30 (205)
T PRK00300 3 RRGLLIVLSGPSGAGKSTLVKALLERDP 30 (205)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCc
Confidence 5899999999999999999999999985
No 466
>TIGR02546 III_secr_ATP type III secretion apparatus H+-transporting two-sector ATPase.
Probab=98.24 E-value=1.9e-06 Score=81.89 Aligned_cols=48 Identities=23% Similarity=0.312 Sum_probs=44.0
Q ss_pred CcceeeceEEEcCCcEEEEEcCCCChHHHHHHHHhcCcCCCccEEEEcC
Q psy1503 104 DLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSLGG 152 (265)
Q Consensus 104 ~~~l~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g 152 (265)
..+++++ |++.+|+.++|+|+||+|||||+++|++..+|+.|.+...|
T Consensus 133 ~~~id~l-~~i~~Gq~~~I~G~sG~GKStLl~~I~~~~~~~~~vi~~iG 180 (422)
T TIGR02546 133 VRAIDGL-LTCGEGQRIGIFAGAGVGKSTLLGMIARGASADVNVIALIG 180 (422)
T ss_pred ceeehhh-ccccCCCEEEEECCCCCChHHHHHHHhCCCCCCEEEEEEEc
Confidence 4579999 99999999999999999999999999999999998886643
No 467
>cd01136 ATPase_flagellum-secretory_path_III Flagellum-specific ATPase/type III secretory pathway virulence-related protein. This group of ATPases are responsible for the export of flagellum and virulence-related proteins. The bacterial flagellar motor is similar to the F0F1-ATPase, in that they both are proton driven rotary molecular devices. However, the main function of the bacterial flagellar motor is to rotate the flagellar filament for cell motility. Intracellular pathogens such as Salmonella and Chlamydia also have proteins which are similar to the flagellar-specific ATPase, but function in the secretion of virulence-related proteins via the type III secretory pathway.
Probab=98.24 E-value=1.5e-06 Score=79.81 Aligned_cols=47 Identities=21% Similarity=0.302 Sum_probs=42.4
Q ss_pred CCcceeeceEEEcCCcEEEEEcCCCChHHHHHHHHhcCcCCCccEEEE
Q psy1503 103 ADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSL 150 (265)
Q Consensus 103 ~~~~l~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~ 150 (265)
+..+++++ +++.+|++++|+|+||+|||||+++|+|...|+.|.+..
T Consensus 56 Gi~aiD~l-~~i~~Gqri~I~G~sG~GKTtLl~~Ia~~~~~~~~vi~~ 102 (326)
T cd01136 56 GVRAIDGL-LTVGKGQRLGIFAGSGVGKSTLLGMIARGTTADVNVIAL 102 (326)
T ss_pred CcEEEeee-eEEcCCcEEEEECCCCCChHHHHHHHhCCCCCCEEEEEE
Confidence 35689999 999999999999999999999999999999998776644
No 468
>PRK07594 type III secretion system ATPase SsaN; Validated
Probab=98.24 E-value=1.3e-06 Score=82.85 Aligned_cols=62 Identities=24% Similarity=0.245 Sum_probs=52.4
Q ss_pred cEEEEeEEEEeCCCCCCcceeeceEEEcCCcEEEEEcCCCChHHHHHHHHhcCcCCCccEEEEcC
Q psy1503 88 HVSLDNVTAQWSLQNADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSLGG 152 (265)
Q Consensus 88 ~i~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g 152 (265)
.++.++++..+.. +..+++++ |++.+|+.++|+|+||+|||||+++|++..+++.|.+.+.|
T Consensus 129 ~~~r~~v~~~l~t--Gi~aID~l-l~i~~GqrigI~G~sG~GKSTLL~~I~~~~~~d~~vi~~iG 190 (433)
T PRK07594 129 AMVRQPITQPLMT--GIRAIDSV-ATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIG 190 (433)
T ss_pred ceeccCHhheeCC--Cceeeeee-eecCCCCEEEEECCCCCCccHHHHHhcCCCCCCEEEEEEEC
Confidence 4566677766643 35689999 99999999999999999999999999999999988776654
No 469
>PRK08149 ATP synthase SpaL; Validated
Probab=98.23 E-value=1.7e-06 Score=82.04 Aligned_cols=48 Identities=23% Similarity=0.374 Sum_probs=42.5
Q ss_pred CcceeeceEEEcCCcEEEEEcCCCChHHHHHHHHhcCcCCCc---cEEEEcC
Q psy1503 104 DLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISS---GKVSLGG 152 (265)
Q Consensus 104 ~~~l~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~---G~i~~~g 152 (265)
..+++++ +++.+|++++|+|++|+|||||+++|++...++. |.|-.+|
T Consensus 139 i~aid~l-l~i~~Gq~i~I~G~sG~GKTTLl~~i~~~~~~dv~v~g~Ig~rg 189 (428)
T PRK08149 139 VRAIDGL-LTCGVGQRMGIFASAGCGKTSLMNMLIEHSEADVFVIGLIGERG 189 (428)
T ss_pred cEEEeee-eeEecCCEEEEECCCCCChhHHHHHHhcCCCCCeEEEEEEeeCC
Confidence 4689999 9999999999999999999999999999998876 6665554
No 470
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=98.22 E-value=1.4e-06 Score=73.52 Aligned_cols=27 Identities=30% Similarity=0.481 Sum_probs=25.2
Q ss_pred CcEEEEEcCCCChHHHHHHHHhcCcCC
Q psy1503 117 KQLACIIGAIGAGKTSLLHIILNELRI 143 (265)
Q Consensus 117 G~~~~ivG~~GsGKSTLl~~l~g~~~~ 143 (265)
|++++|+||||||||||+++|++...+
T Consensus 2 g~~i~l~G~sGsGKsTl~~~l~~~~~~ 28 (186)
T PRK10078 2 GKLIWLMGPSGSGKDSLLAALRQREQT 28 (186)
T ss_pred CcEEEEECCCCCCHHHHHHHHhccCCC
Confidence 789999999999999999999998765
No 471
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=98.21 E-value=1.8e-06 Score=69.54 Aligned_cols=47 Identities=15% Similarity=-0.019 Sum_probs=33.5
Q ss_pred ccCCCCCCCCHHHHHHHHHHHH-----HccCCCEEEEeCCCCCcCHHHHHHHHHHH
Q psy1503 206 VVGERGASLSGGQKARINLARA-----VYKNADIYLLDDPLSAVDMHVGKHLFEDC 256 (265)
Q Consensus 206 ~vg~~g~~LSgGqrqRialARa-----l~~~~~illLDEp~s~LD~~~~~~i~~~~ 256 (265)
.+..+...++++++++...... ....++++ |+|++|.....++++.+
T Consensus 115 ~v~nK~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~----~~Sa~~~~~~~~l~~~l 166 (170)
T cd01876 115 VVLTKADKLKKSELAKALKEIKKELKLFEIDPPII----LFSSLKGQGIDELRALI 166 (170)
T ss_pred EEEEchhcCChHHHHHHHHHHHHHHHhccCCCceE----EEecCCCCCHHHHHHHH
Confidence 3555666788998887765554 24456666 99999999888887654
No 472
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=98.20 E-value=8.9e-07 Score=77.03 Aligned_cols=45 Identities=13% Similarity=0.296 Sum_probs=34.5
Q ss_pred EEEEEcCCCChHHHHHHHHhcCcCCCccEEEEcCeEEEEecCCCCcccc
Q psy1503 119 LACIIGAIGAGKTSLLHIILNELRISSGKVSLGGTVSYASQEPWIFAAT 167 (265)
Q Consensus 119 ~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g~i~~v~Q~~~l~~~t 167 (265)
++||.|+||||||||++.|.+.+.+..+ ++.+.+++++.+..+..
T Consensus 1 IigI~G~sGSGKTTla~~L~~~l~~~~~----~~~v~vi~~D~f~~~~~ 45 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQALLSRWPD----HPNVELITTDGFLYPNK 45 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHHHHhhcCC----CCcEEEEecCcccCcHH
Confidence 4899999999999999999999875321 13466788887765543
No 473
>PRK09862 putative ATP-dependent protease; Provisional
Probab=98.19 E-value=1.8e-06 Score=83.57 Aligned_cols=59 Identities=22% Similarity=0.164 Sum_probs=52.3
Q ss_pred EEeEEEEeCCCCCCcceeeceEEEcCCcEEEEEcCCCChHHHHHHHHhcCcCCCccEEEEcC
Q psy1503 91 LDNVTAQWSLQNADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSLGG 152 (265)
Q Consensus 91 ~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g 152 (265)
+.|++..|+. ..+++++++.+..|+.+.++||+|||||||++.|.|+++|.+|++.+..
T Consensus 187 ~~d~~~v~Gq---~~~~~al~laa~~G~~llliG~~GsGKTtLak~L~gllpp~~g~e~le~ 245 (506)
T PRK09862 187 QHDLSDVIGQ---EQGKRGLEITAAGGHNLLLIGPPGTGKTMLASRINGLLPDLSNEEALES 245 (506)
T ss_pred ccCeEEEECc---HHHHhhhheeccCCcEEEEECCCCCcHHHHHHHHhccCCCCCCcEEEec
Confidence 4577777753 4588999999999999999999999999999999999999999988775
No 474
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=98.17 E-value=1.8e-06 Score=72.48 Aligned_cols=33 Identities=18% Similarity=0.248 Sum_probs=29.4
Q ss_pred CCcEEEEEcCCCChHHHHHHHHhcCcCCCccEEEEcC
Q psy1503 116 PKQLACIIGAIGAGKTSLLHIILNELRISSGKVSLGG 152 (265)
Q Consensus 116 ~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g 152 (265)
+|++++|+|+|||||||++++|.+++.+ +.++|
T Consensus 2 ~ge~i~l~G~sGsGKSTl~~~la~~l~~----~~i~g 34 (176)
T PRK09825 2 AGESYILMGVSGSGKSLIGSKIAALFSA----KFIDG 34 (176)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhcCC----EEECC
Confidence 5899999999999999999999999877 45665
No 475
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=98.17 E-value=2.8e-06 Score=71.32 Aligned_cols=53 Identities=15% Similarity=0.212 Sum_probs=38.2
Q ss_pred ccCCCCCCCCHHHHHHHH--HHHHHcc-CCCEEEEeCCCCCcCHHHHHHHHHHHHHHHhhc
Q psy1503 206 VVGERGASLSGGQKARIN--LARAVYK-NADIYLLDDPLSAVDMHVGKHLFEDCISGCLTS 263 (265)
Q Consensus 206 ~vg~~g~~LSgGqrqRia--lARal~~-~~~illLDEp~s~LD~~~~~~i~~~~i~~~l~~ 263 (265)
.+..+...+|+|++|++. +++.+-. +++++ |+|++|....+++++ .+..+++.
T Consensus 140 iv~nK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~----~~Sa~~~~gi~~l~~-~i~~~~~~ 195 (196)
T PRK00454 140 IVLTKADKLKKGERKKQLKKVRKALKFGDDEVI----LFSSLKKQGIDELRA-AIAKWLAE 195 (196)
T ss_pred EEEECcccCCHHHHHHHHHHHHHHHHhcCCceE----EEEcCCCCCHHHHHH-HHHHHhcC
Confidence 345666778999999977 6666644 34444 999999999888876 44566554
No 476
>PRK09099 type III secretion system ATPase; Provisional
Probab=98.14 E-value=3.2e-06 Score=80.50 Aligned_cols=48 Identities=19% Similarity=0.293 Sum_probs=44.2
Q ss_pred CcceeeceEEEcCCcEEEEEcCCCChHHHHHHHHhcCcCCCccEEEEcC
Q psy1503 104 DLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSLGG 152 (265)
Q Consensus 104 ~~~l~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g 152 (265)
..+++++ +++.+|++++|+|++|+|||||+++|++...++.|.+.+.|
T Consensus 151 i~~ID~l-~~i~~Gq~~~I~G~sG~GKTtLl~~ia~~~~~d~~vi~~iG 198 (441)
T PRK09099 151 VRIVDGL-MTLGEGQRMGIFAPAGVGKSTLMGMFARGTQCDVNVIALIG 198 (441)
T ss_pred ceeccce-eeecCCCEEEEECCCCCCHHHHHHHHhCCCCCCeEEEEEEc
Confidence 4579999 99999999999999999999999999999999988877665
No 477
>PLN02796 D-glycerate 3-kinase
Probab=98.14 E-value=8.3e-07 Score=81.77 Aligned_cols=48 Identities=17% Similarity=0.220 Sum_probs=39.3
Q ss_pred cceeeceEEE---cCCcE-----EEEEcCCCChHHHHHHHHhcCcCCC---ccEEEEcC
Q psy1503 105 LTLNAVSITF---KPKQL-----ACIIGAIGAGKTSLLHIILNELRIS---SGKVSLGG 152 (265)
Q Consensus 105 ~~l~~isl~i---~~G~~-----~~ivG~~GsGKSTLl~~l~g~~~~~---~G~i~~~g 152 (265)
.+++++++.+ ++|+. ++|+|++|||||||++.|.+++.+. .|.|.+++
T Consensus 80 ~il~~l~~~~~~~~~G~~~~pliIGI~G~sGSGKSTLa~~L~~lL~~~g~~~g~IsiDd 138 (347)
T PLN02796 80 WCEDQLEAHRSKFKDGDEIPPLVIGISAPQGCGKTTLVFALVYLFNATGRRAASLSIDD 138 (347)
T ss_pred HHHHHHHHHHhhhccCCCCCCEEEEEECCCCCcHHHHHHHHHHHhcccCCceeEEEECC
Confidence 5688888887 56776 9999999999999999999999875 35555554
No 478
>PRK14079 recF recombination protein F; Provisional
Probab=98.14 E-value=3.2e-06 Score=78.52 Aligned_cols=44 Identities=23% Similarity=0.215 Sum_probs=40.2
Q ss_pred CCCCHHHHHHHHHHHHHc---------cCCCEEEEeCCCCCcCHHHHHHHHHH
Q psy1503 212 ASLSGGQKARINLARAVY---------KNADIYLLDDPLSAVDMHVGKHLFED 255 (265)
Q Consensus 212 ~~LSgGqrqRialARal~---------~~~~illLDEp~s~LD~~~~~~i~~~ 255 (265)
.-+|+||+++++||+.|+ .+|++++||||+|.||......+++.
T Consensus 262 ~~~S~Gqqr~~~lal~la~~~~~~~~~~~~pilLlDd~~seLD~~~~~~l~~~ 314 (349)
T PRK14079 262 RYASRGEARTVALALRLAEHRLLWEHFGEAPVLLVDDFTAELDPRRRGALLAL 314 (349)
T ss_pred HhCChhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEcccchhcCHHHHHHHHHH
Confidence 458999999999999998 89999999999999999999888653
No 479
>PRK05480 uridine/cytidine kinase; Provisional
Probab=98.13 E-value=2.9e-06 Score=72.73 Aligned_cols=44 Identities=25% Similarity=0.382 Sum_probs=36.8
Q ss_pred cCCcEEEEEcCCCChHHHHHHHHhcCcCCCccEEEEcCeEEEEecCCCCccc
Q psy1503 115 KPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSLGGTVSYASQEPWIFAA 166 (265)
Q Consensus 115 ~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g~i~~v~Q~~~l~~~ 166 (265)
.++.+++|+|++|||||||.+.|.+.+. .+.+.+++|+.+..+.
T Consensus 4 ~~~~iI~I~G~sGsGKTTl~~~l~~~l~--------~~~~~~i~~D~~~~~~ 47 (209)
T PRK05480 4 KKPIIIGIAGGSGSGKTTVASTIYEELG--------DESIAVIPQDSYYKDQ 47 (209)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhC--------CCceEEEeCCccccCc
Confidence 4678999999999999999999999872 2458889999887643
No 480
>PRK15494 era GTPase Era; Provisional
Probab=98.11 E-value=2.2e-06 Score=79.26 Aligned_cols=54 Identities=24% Similarity=0.342 Sum_probs=48.3
Q ss_pred CCcEEEEeEEEEeCCCCCCcceeeceEEEcCCc-------EEEEEcCCCChHHHHHHHHhcCc
Q psy1503 86 KGHVSLDNVTAQWSLQNADLTLNAVSITFKPKQ-------LACIIGAIGAGKTSLLHIILNEL 141 (265)
Q Consensus 86 ~~~i~~~~~~~~~~~~~~~~~l~~isl~i~~G~-------~~~ivG~~GsGKSTLl~~l~g~~ 141 (265)
.+.+++.+++|+|+. ..++++.+++++++|+ .++|+|.+|+|||||++.+.|..
T Consensus 16 ~g~~~~~~~~~~~~~--~~~~~~~~~~~~~~g~~~~~k~~kV~ivG~~nvGKSTLin~l~~~k 76 (339)
T PRK15494 16 KGDTEALAAAVREDA--STGSTSKLPLEVKFGKMSNQKTVSVCIIGRPNSGKSTLLNRIIGEK 76 (339)
T ss_pred CCccccccccccCCC--CcccccCCccccccccccccceeEEEEEcCCCCCHHHHHHHHhCCc
Confidence 457899999999983 4568999999999999 99999999999999999998864
No 481
>PRK06315 type III secretion system ATPase; Provisional
Probab=98.10 E-value=7.1e-06 Score=78.15 Aligned_cols=87 Identities=23% Similarity=0.272 Sum_probs=59.8
Q ss_pred cceeeceEEEcCCcEEEEEcCCCChHHHHHHHHhcCcCCC-ccEEEEcC---e----------------EEEE-----ec
Q psy1503 105 LTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRIS-SGKVSLGG---T----------------VSYA-----SQ 159 (265)
Q Consensus 105 ~~l~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~-~G~i~~~g---~----------------i~~v-----~Q 159 (265)
.+++++ |++.+|+.++|+|+||||||||+++|+|..++. .|.|.+.| + .+++ +|
T Consensus 153 ~aID~~-l~i~~Gq~i~I~G~sG~GKStLl~~I~~~~~~~~~~vi~liGerg~ev~~~~~~~l~~~g~~~svvvvats~q 231 (442)
T PRK06315 153 RCIDGM-LTVARGQRIGIFAGAGVGKSSLLGMIARNAEEADVNVIALIGERGREVREFIEGDLGEEGMKRSVIVVSTSDQ 231 (442)
T ss_pred EEEecc-ccccCCcEEEEECCCCCCcchHHHHhhcccccCCceEEEEECCCchHHHHHHHHHHHhcCCceEEEEEeCCCC
Confidence 467777 999999999999999999999999999988543 45665533 1 4455 88
Q ss_pred CCCC------ccccHHHHHhc-CCc-----ccHHHHHHHHHHhcc
Q psy1503 160 EPWI------FAATIRQNILF-GLP-----YLRRRYADVIRVCAL 192 (265)
Q Consensus 160 ~~~l------~~~ti~eni~~-~~~-----~~~~~~~~~~~~~~l 192 (265)
+|.. ...++.|.+.. +.. .+..++.++++.+++
T Consensus 232 ~p~~rlnp~~va~~IAE~~r~~g~~Vl~~~Ds~tR~a~alreV~L 276 (442)
T PRK06315 232 SSQLRLNAAYVGTAIAEYFRDQGKTVVLMMDSVTRFARALREVGL 276 (442)
T ss_pred CHHHHhhHHHHHHHHHHHHHHcCCCcchhhhHHHHHHHHHHHhCc
Confidence 7641 12366776653 221 123456666666666
No 482
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=98.10 E-value=7e-06 Score=71.96 Aligned_cols=22 Identities=27% Similarity=0.520 Sum_probs=19.5
Q ss_pred CcEEEEEcCCCChHHHHHHHHh
Q psy1503 117 KQLACIIGAIGAGKTSLLHIIL 138 (265)
Q Consensus 117 G~~~~ivG~~GsGKSTLl~~l~ 138 (265)
|++..|+||.|+|||||+..++
T Consensus 1 g~~~ll~g~~G~GKS~lal~la 22 (239)
T cd01125 1 GYVSALVAPGGTGKSSLLLVLA 22 (239)
T ss_pred CceeEEEcCCCCCHHHHHHHHH
Confidence 6788999999999999997764
No 483
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=98.10 E-value=2.1e-06 Score=74.92 Aligned_cols=35 Identities=23% Similarity=0.340 Sum_probs=31.5
Q ss_pred cCCcEEEEEcCCCChHHHHHHHHhcCcCCCccEEE
Q psy1503 115 KPKQLACIIGAIGAGKTSLLHIILNELRISSGKVS 149 (265)
Q Consensus 115 ~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~ 149 (265)
.+..+++|+||||||||||++.|.+.+++.+|.+.
T Consensus 31 ~~~~iigi~G~~GsGKTTl~~~L~~~l~~~~g~~~ 65 (229)
T PRK09270 31 QRRTIVGIAGPPGAGKSTLAEFLEALLQQDGELPA 65 (229)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhhhccCCce
Confidence 45679999999999999999999999999999743
No 484
>TIGR03498 FliI_clade3 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=98.10 E-value=3.1e-06 Score=80.20 Aligned_cols=47 Identities=19% Similarity=0.252 Sum_probs=42.0
Q ss_pred cceeeceEEEcCCcEEEEEcCCCChHHHHHHHHhcCcCCCccEEEEcC
Q psy1503 105 LTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSLGG 152 (265)
Q Consensus 105 ~~l~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g 152 (265)
.++ |.+|++.+|+.++|+|+||+|||||+++|++..+|+.|.|.+.|
T Consensus 129 ~ai-D~~~~i~~Gq~i~I~G~sG~GKTtLl~~I~~~~~~~~gvi~~iG 175 (418)
T TIGR03498 129 RVI-DTFLPLCRGQRLGIFAGSGVGKSTLLSMLARNTDADVVVIALVG 175 (418)
T ss_pred EEE-eeeccccCCcEEEEECCCCCChHHHHHHHhCCCCCCEEEEEEEe
Confidence 345 47999999999999999999999999999999999998776655
No 485
>TIGR03497 FliI_clade2 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=98.09 E-value=4.7e-06 Score=78.93 Aligned_cols=48 Identities=23% Similarity=0.344 Sum_probs=43.0
Q ss_pred CcceeeceEEEcCCcEEEEEcCCCChHHHHHHHHhcCcCCCccEEEEcC
Q psy1503 104 DLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSLGG 152 (265)
Q Consensus 104 ~~~l~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g 152 (265)
..+++++ +++.+|++++|+|++|+|||||+++|.+..+++.|.+.+.|
T Consensus 125 i~~iD~l-~~i~~Gqri~I~G~sG~GKTtLl~~i~~~~~~~~gvi~~~G 172 (413)
T TIGR03497 125 IKAIDGL-LTIGKGQRVGIFAGSGVGKSTLLGMIARNAKADINVIALIG 172 (413)
T ss_pred ceeeeeE-EEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCeEEEEEEc
Confidence 4579999 99999999999999999999999999999999888765444
No 486
>PF09818 ABC_ATPase: Predicted ATPase of the ABC class; InterPro: IPR019195 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This entry consists of various predicted ABC transporter class ATPases.
Probab=98.09 E-value=1.1e-05 Score=75.94 Aligned_cols=126 Identities=19% Similarity=0.243 Sum_probs=89.8
Q ss_pred EEEcCCcEEEEEcCCCChHHHHHHHH-hcCcCCCccEEEEcCeEEEEecCCCCccccHHHHHhcCCcccHHHHHHHHHHh
Q psy1503 112 ITFKPKQLACIIGAIGAGKTSLLHII-LNELRISSGKVSLGGTVSYASQEPWIFAATIRQNILFGLPYLRRRYADVIRVC 190 (265)
Q Consensus 112 l~i~~G~~~~ivG~~GsGKSTLl~~l-~g~~~~~~G~i~~~g~i~~v~Q~~~l~~~ti~eni~~~~~~~~~~~~~~~~~~ 190 (265)
+-|++| ++.|+|..=-||||||++| .|.|+...| ||+=-.|.. +... .|| ..+- ..+..+
T Consensus 240 MGIp~G-vTlIvGGGyHGKSTLL~Ale~GVYnHipG----DGRE~VVT~-~~av--kir-------AEDG----R~V~~v 300 (448)
T PF09818_consen 240 MGIPKG-VTLIVGGGYHGKSTLLEALERGVYNHIPG----DGREFVVTD-PDAV--KIR-------AEDG----RSVEGV 300 (448)
T ss_pred EeeCCc-EEEEECCCCccHHHHHHHHHhcccCCCCC----CCceEEEEC-CCce--EEE-------ecCC----ceEeCc
Confidence 568999 9999999999999999999 678876655 443111111 1000 010 0011 123446
Q ss_pred cchhHHhcCCCCCccccCCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHH
Q psy1503 191 ALQDDFDSLPNGDFTVVGERGASLSGGQKARINLARAVYKNADIYLLDDPLSAVDMHVGKHLFEDCI 257 (265)
Q Consensus 191 ~l~~~i~~l~~g~~t~vg~~g~~LSgGqrqRialARal~~~~~illLDEp~s~LD~~~~~~i~~~~i 257 (265)
.+..+|..||.|.+|.--. -.+=||-.-|=-.|..||-..+++||+||=|||---..+...++.++
T Consensus 301 DISpFI~~LP~g~dT~~Fs-T~~ASGSTSqAAnI~EAlE~Ga~~LLiDEDtsATNfmiRD~rMq~Lv 366 (448)
T PF09818_consen 301 DISPFINNLPGGKDTTCFS-TENASGSTSQAANIMEALEAGARLLLIDEDTSATNFMIRDERMQALV 366 (448)
T ss_pred cchHHHhhCCCCCCCCccc-ccCCCchHHHHHHHHHHHHcCCCEEEEcCcccchheeehhHHHHHhh
Confidence 7888999999999986322 34679999999999999999999999999999987766655555555
No 487
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=98.08 E-value=3.3e-06 Score=88.94 Aligned_cols=44 Identities=20% Similarity=0.191 Sum_probs=39.7
Q ss_pred CCCCCHHHHHHHHHHHHHc----cCCCEEEEeCCCCCcCHHHHHHHHH
Q psy1503 211 GASLSGGQKARINLARAVY----KNADIYLLDDPLSAVDMHVGKHLFE 254 (265)
Q Consensus 211 g~~LSgGqrqRialARal~----~~~~illLDEp~s~LD~~~~~~i~~ 254 (265)
...||||||++++||++++ .+|+++|||||+++||+.....+.+
T Consensus 1072 ~~~lSgge~~~~~la~~~~~~~~~~~~~~~lDE~~~~ld~~~~~~~~~ 1119 (1164)
T TIGR02169 1072 LEAMSGGEKSLTALSFIFAIQRYKPSPFYAFDEVDMFLDGVNVERVAK 1119 (1164)
T ss_pred chhcCcchHHHHHHHHHHHHHhcCCCCcEEecccccccCHHHHHHHHH
Confidence 4589999999999999997 4789999999999999999888755
No 488
>TIGR01026 fliI_yscN ATPase FliI/YscN family. This family of ATPases demonstrates extensive homology with ATP synthase F1, beta subunit. It is a mixture of members with two different protein functions. The first group is exemplified by Salmonella typhimurium FliI protein. It is needed for flagellar assembly, its ATPase activity is required for flagellation, and it may be involved in a specialized protein export pathway that proceeds without signal peptide cleavage. The second group of proteins function in the export of virulence proteins; exemplified by Yersinia sp. YscN protein an ATPase involved in the type III secretory pathway for the antihost Yops proteins.
Probab=98.07 E-value=4.1e-06 Score=79.91 Aligned_cols=46 Identities=22% Similarity=0.331 Sum_probs=41.5
Q ss_pred CcceeeceEEEcCCcEEEEEcCCCChHHHHHHHHhcCcCCCccEEEE
Q psy1503 104 DLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSL 150 (265)
Q Consensus 104 ~~~l~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~ 150 (265)
..+++++ +++.+|++++|+|+||+|||||+++|.+..+++.|.+..
T Consensus 151 i~~iD~l-~~i~~Gq~~~I~G~sG~GKStLl~~I~~~~~~~~~vi~~ 196 (440)
T TIGR01026 151 VRSIDGL-LTVGKGQRIGIFAGSGVGKSTLLGMIARNTEADVNVIAL 196 (440)
T ss_pred eeeeeec-cccCCCcEEEEECCCCCCHHHHHHHHhCCCCCCEEEEEE
Confidence 4578888 999999999999999999999999999999998776544
No 489
>PLN02318 phosphoribulokinase/uridine kinase
Probab=98.06 E-value=4e-06 Score=82.00 Aligned_cols=55 Identities=27% Similarity=0.341 Sum_probs=45.9
Q ss_pred cEEEEEcCCCChHHHHHHHHhcCcCCCccEEEEcCe------EEEEecCCCCcc-ccHHHHHh
Q psy1503 118 QLACIIGAIGAGKTSLLHIILNELRISSGKVSLGGT------VSYASQEPWIFA-ATIRQNIL 173 (265)
Q Consensus 118 ~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g~------i~~v~Q~~~l~~-~ti~eni~ 173 (265)
-+++|.||||||||||++.|.+.+ |..|.|.+|+. +.+.+|+|.+++ .++.+|+.
T Consensus 66 iIIGIaGpSGSGKTTLAk~LaglL-p~vgvIsmDdy~~~~~~i~~nfD~P~a~D~d~L~enL~ 127 (656)
T PLN02318 66 ILVGVAGPSGAGKTVFTEKVLNFM-PSIAVISMDNYNDSSRIIDGNFDDPRLTDYDTLLDNIH 127 (656)
T ss_pred EEEEEECCCCCcHHHHHHHHHhhC-CCcEEEEEcceecchhhhCccCCChhhcchhHHHHHHH
Confidence 589999999999999999999987 56789988873 567788888876 47778874
No 490
>PRK13830 conjugal transfer protein TrbE; Provisional
Probab=98.06 E-value=3e-05 Score=79.57 Aligned_cols=38 Identities=26% Similarity=0.484 Sum_probs=29.6
Q ss_pred eceEEEcCCcEEEEEcCCCChHHHHHHHHhcCcCCCcc
Q psy1503 109 AVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSG 146 (265)
Q Consensus 109 ~isl~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G 146 (265)
.+|+.....-.+.|+|++|||||||++.|+..+....|
T Consensus 448 ~~n~h~~d~g~~~i~G~tGsGKS~l~~~l~~~~~~~~~ 485 (818)
T PRK13830 448 RLNLHVDDVGHTLIFGPTGSGKSTLLALIAAQFRRYAG 485 (818)
T ss_pred EEEEEECCCCEEEEECCCCCCHHHHHHHHHhcccccCC
Confidence 35565555558999999999999999999887665333
No 491
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=98.04 E-value=6.1e-06 Score=88.62 Aligned_cols=47 Identities=32% Similarity=0.403 Sum_probs=40.2
Q ss_pred CCCCCCCHHHHHHHH----HHHH--------HccCCCEEEEeCCCCCcCHHHHHHHHHH
Q psy1503 209 ERGASLSGGQKARIN----LARA--------VYKNADIYLLDDPLSAVDMHVGKHLFED 255 (265)
Q Consensus 209 ~~g~~LSgGqrqRia----lARa--------l~~~~~illLDEp~s~LD~~~~~~i~~~ 255 (265)
.+...||||||||++ +|++ +..+|++++|||||++||+.....+++.
T Consensus 1243 ~~~~~lSgGek~~~~~~~l~a~~~~~y~~~~~~~~p~lilLDEp~a~lD~~~~~~~~~l 1301 (1353)
T TIGR02680 1243 HRFGPASGGERALALYVPLFAAASSHYTQEAYPHAPRLILLDEAFAGVDDNARAHLFGL 1301 (1353)
T ss_pred ccccCCCchHHHHHHHHHHHHHHHHhhcccccCCCCCEEEEeCccccCCHHHHHHHHHH
Confidence 346789999999996 5766 4469999999999999999999998763
No 492
>PF13558 SbcCD_C: Putative exonuclease SbcCD, C subunit; PDB: 3QG5_B 3QF7_A 3THO_A 3EUK_H 3EUJ_A 3AV0_B 3AUY_B 3AUX_A.
Probab=98.04 E-value=6.9e-06 Score=61.48 Aligned_cols=46 Identities=28% Similarity=0.409 Sum_probs=33.0
Q ss_pred CCCCCCCHHHHHH-H--HHHHHH----cc------CCCEEEEeCCCCCcCHHHHHHHHH
Q psy1503 209 ERGASLSGGQKAR-I--NLARAV----YK------NADIYLLDDPLSAVDMHVGKHLFE 254 (265)
Q Consensus 209 ~~g~~LSgGqrqR-i--alARal----~~------~~~illLDEp~s~LD~~~~~~i~~ 254 (265)
.....+||||||. + +|+-|+ -. .+++++|||||++||......+++
T Consensus 28 ~~~~~~SGGEk~~~~~l~l~aal~~~~~~~~~~~~~~~~l~lDEaF~~lD~~~~~~~~~ 86 (90)
T PF13558_consen 28 RSFGTLSGGEKQFPFYLALAAALAALYSSSSGRGDSPRLLFLDEAFSKLDEENIERLMD 86 (90)
T ss_dssp EEGGGS-HHHHHHHHHHHHHHHHHHHHHTTSTS-TTBSEEEEESTTTTCGHHHHHHHHH
T ss_pred ccCCCCChhHhHHHHHHHHHHHHHHHHhhhcCCCCCcCEEEEeCCCCcCCHHHHHHHHH
Confidence 4457899999954 2 233332 22 369999999999999999888765
No 493
>PRK05922 type III secretion system ATPase; Validated
Probab=98.02 E-value=7.6e-06 Score=77.74 Aligned_cols=48 Identities=25% Similarity=0.314 Sum_probs=41.8
Q ss_pred CcceeeceEEEcCCcEEEEEcCCCChHHHHHHHHhcCcCCCccEEEEcC
Q psy1503 104 DLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSLGG 152 (265)
Q Consensus 104 ~~~l~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g 152 (265)
..+++.+ +++.+|+.++|+|+||+|||||+++|+|..+++.|.+...|
T Consensus 145 Ir~ID~l-l~I~~GqrigI~G~nG~GKSTLL~~Ia~~~~~d~gvi~liG 192 (434)
T PRK05922 145 IKAIDAF-LTLGKGQRIGVFSEPGSGKSSLLSTIAKGSKSTINVIALIG 192 (434)
T ss_pred ceeecce-EEEcCCcEEEEECCCCCChHHHHHHHhccCCCCceEEEEeC
Confidence 3456665 99999999999999999999999999999999988875544
No 494
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=98.02 E-value=2.4e-05 Score=77.81 Aligned_cols=33 Identities=24% Similarity=0.260 Sum_probs=27.7
Q ss_pred cCCcEEEEEcCCCChHHHHHHHHhcCcCCCccE
Q psy1503 115 KPKQLACIIGAIGAGKTSLLHIILNELRISSGK 147 (265)
Q Consensus 115 ~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~ 147 (265)
+..+.+.|+||+|+|||||++++.+...+..|+
T Consensus 173 ~~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~ 205 (615)
T TIGR02903 173 PFPQHIILYGPPGVGKTTAARLALEEAKKLKHT 205 (615)
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHhhhhccCC
Confidence 345679999999999999999999988765554
No 495
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=98.02 E-value=6.2e-06 Score=75.66 Aligned_cols=37 Identities=24% Similarity=0.379 Sum_probs=33.5
Q ss_pred cCCcEEEEEcCCCChHHHHHHHHhcCcCCCccEEEEc
Q psy1503 115 KPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSLG 151 (265)
Q Consensus 115 ~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~ 151 (265)
++|++++++||||+||||++..|++.+.+..++|.+-
T Consensus 112 ~~~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li 148 (318)
T PRK10416 112 KKPFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLA 148 (318)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEE
Confidence 5789999999999999999999999999887888663
No 496
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.01 E-value=8.3e-06 Score=87.56 Aligned_cols=129 Identities=16% Similarity=0.277 Sum_probs=70.3
Q ss_pred cEEEEEcCCCChHHHHHHHH----hcCcCCC-ccEEEEcC-----------eEEEEecCCCCccccHHHHHhcCCcccHH
Q psy1503 118 QLACIIGAIGAGKTSLLHII----LNELRIS-SGKVSLGG-----------TVSYASQEPWIFAATIRQNILFGLPYLRR 181 (265)
Q Consensus 118 ~~~~ivG~~GsGKSTLl~~l----~g~~~~~-~G~i~~~g-----------~i~~v~Q~~~l~~~ti~eni~~~~~~~~~ 181 (265)
.+++|+|||||||||++.+| .|..+|. .|.+.+++ .|.+.+++..-...+|.-.+.........
T Consensus 29 ~~~~I~G~NGaGKTTil~ai~~al~G~~~~~~~g~~~i~~~~~~~~~~~~a~V~l~F~~~~g~~~~v~R~~~~~~~~~~~ 108 (1311)
T TIGR00606 29 PLTILVGPNGAGKTTIIECLKYICTGDFPPGTKGNTFVHDPKVAQETDVRAQIRLQFRDVNGEECAVVRSMVCTQKTKKT 108 (1311)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCceEecCCCcCccHhhhheeEEEEEcCCCCEEEEEeeeeeeeccCcc
Confidence 49999999999999999999 5999996 68776643 24555543211111111111000000000
Q ss_pred HHHHHHHHhcchhHHhcCCCCCccccCCCCCCCCHHHHHHHHHHHHHccC------CCEEEEeCCCCCcCHHHHHHHHHH
Q psy1503 182 RYADVIRVCALQDDFDSLPNGDFTVVGERGASLSGGQKARINLARAVYKN------ADIYLLDDPLSAVDMHVGKHLFED 255 (265)
Q Consensus 182 ~~~~~~~~~~l~~~i~~l~~g~~t~vg~~g~~LSgGqrqRialARal~~~------~~illLDEp~s~LD~~~~~~i~~~ 255 (265)
.+.. +...+...++|....+..+...++.+..+.+.+..+.+.. =++ .-|++ ++.....+|+.
T Consensus 109 ~~~~------~~~~~~~~~~g~~~~~s~~~~e~~~~i~~~lGv~~~~f~~vi~~~Qge~---~~~~~--~~~~rk~~~d~ 177 (1311)
T TIGR00606 109 EFKT------LEGVITRYKHGEKVSLSSKCAEIDREMISHLGVSKAVLNNVIFCHQEDS---NWPLS--EGKALKQKFDE 177 (1311)
T ss_pred cchh------hhhhheecCCCceeeccccHHHHHHHHHHHhCCCHHHHhhceeeCCccc---ccccC--ChHHHHHHHHH
Confidence 0000 1111112233333333444556778888888887776653 222 13443 67778888887
Q ss_pred HH
Q psy1503 256 CI 257 (265)
Q Consensus 256 ~i 257 (265)
++
T Consensus 178 if 179 (1311)
T TIGR00606 178 IF 179 (1311)
T ss_pred Hh
Confidence 76
No 497
>PRK07960 fliI flagellum-specific ATP synthase; Validated
Probab=97.98 E-value=9e-06 Score=77.45 Aligned_cols=46 Identities=24% Similarity=0.358 Sum_probs=39.7
Q ss_pred ceeeceEEEcCCcEEEEEcCCCChHHHHHHHHhcCcCCCc---cEEEEcC
Q psy1503 106 TLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISS---GKVSLGG 152 (265)
Q Consensus 106 ~l~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~---G~i~~~g 152 (265)
+++.+ |++.+|++++|+|+||+|||||+++|+|+.+|+. |.|-.+|
T Consensus 165 aID~l-l~I~~Gqri~I~G~sG~GKTTLL~~Ia~~~~~d~iv~g~Igerg 213 (455)
T PRK07960 165 AINAL-LTVGRGQRMGLFAGSGVGKSVLLGMMARYTQADVIVVGLIGERG 213 (455)
T ss_pred eeeec-ccccCCcEEEEECCCCCCccHHHHHHhCCCCCCEEEEEEEEECC
Confidence 34433 9999999999999999999999999999999885 7776666
No 498
>PRK05688 fliI flagellum-specific ATP synthase; Validated
Probab=97.98 E-value=8e-06 Score=77.90 Aligned_cols=40 Identities=20% Similarity=0.258 Sum_probs=37.0
Q ss_pred CcceeeceEEEcCCcEEEEEcCCCChHHHHHHHHhcCcCCC
Q psy1503 104 DLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRIS 144 (265)
Q Consensus 104 ~~~l~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~ 144 (265)
..+++++ |++.+|++++|+|+||+|||||+++|.|..+|+
T Consensus 156 i~aID~l-~~I~~GqrigI~G~sG~GKSTLl~~I~g~~~~d 195 (451)
T PRK05688 156 IRSINGL-LTVGRGQRLGLFAGTGVGKSVLLGMMTRFTEAD 195 (451)
T ss_pred eeeecce-EEecCCcEEEEECCCCCCHHHHHHHHhCCCCCC
Confidence 4578889 999999999999999999999999999998775
No 499
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.98 E-value=5.7e-06 Score=83.29 Aligned_cols=52 Identities=13% Similarity=0.246 Sum_probs=42.0
Q ss_pred ceeeceEEEcCCcEEEEEcCCCChHHHHHHHHhcCcCCCccEEEEcCeEEEEecCC
Q psy1503 106 TLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSLGGTVSYASQEP 161 (265)
Q Consensus 106 ~l~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g~i~~v~Q~~ 161 (265)
++++.++.+++|+++++|||||+||||++..|++.+....|. .+|+++..|.
T Consensus 174 il~~~~~~~~~g~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~----kkV~lit~Dt 225 (767)
T PRK14723 174 VLRDEDALLAQGGVLALVGPTGVGKTTTTAKLAARCVAREGA----DQLALLTTDS 225 (767)
T ss_pred hccCCCcccCCCeEEEEECCCCCcHHHHHHHHHhhHHHHcCC----CeEEEecCcc
Confidence 466777888889999999999999999999999988766652 1366777665
No 500
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=97.96 E-value=5.1e-06 Score=75.20 Aligned_cols=48 Identities=17% Similarity=0.324 Sum_probs=36.7
Q ss_pred cEEEEEcCCCChHHHHHHHHhcCcC--CCccEEEEcCeEEEEecCCCCccccHHHH
Q psy1503 118 QLACIIGAIGAGKTSLLHIILNELR--ISSGKVSLGGTVSYASQEPWIFAATIRQN 171 (265)
Q Consensus 118 ~~~~ivG~~GsGKSTLl~~l~g~~~--~~~G~i~~~g~i~~v~Q~~~l~~~ti~en 171 (265)
.++||.|||||||||++++|.+++. |.+|+| ..++++.+..+...++.
T Consensus 63 ~IIGIaG~~GSGKSTlar~L~~ll~~~~~~g~V------~vi~~D~f~~~~~~l~~ 112 (290)
T TIGR00554 63 YIISIAGSVAVGKSTTARILQALLSRWPEHRKV------ELITTDGFLHPNQVLKE 112 (290)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHhhcCCCCce------EEEecccccccHHHHHH
Confidence 4899999999999999999999887 666654 45666766655445443
Done!