Query psy1503
Match_columns 265
No_of_seqs 303 out of 2748
Neff 7.5
Searched_HMMs 29240
Date Fri Aug 16 18:37:18 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1503.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/1503hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4f4c_A Multidrug resistance pr 100.0 5.5E-56 1.9E-60 466.3 33.7 202 62-264 387-604 (1321)
2 4f4c_A Multidrug resistance pr 100.0 4.7E-53 1.6E-57 444.1 31.2 202 62-264 1049-1267(1321)
3 4a82_A Cystic fibrosis transme 100.0 4.1E-52 1.4E-56 405.6 32.1 201 62-264 312-527 (578)
4 3qf4_A ABC transporter, ATP-bi 100.0 2E-51 6.8E-56 401.4 32.8 201 62-264 314-529 (587)
5 3qf4_B Uncharacterized ABC tra 100.0 3.8E-52 1.3E-56 407.3 26.0 200 62-264 328-541 (598)
6 2yl4_A ATP-binding cassette SU 100.0 7.9E-51 2.7E-55 397.7 33.8 201 62-263 313-532 (595)
7 3b5x_A Lipid A export ATP-bind 100.0 8.1E-51 2.8E-55 396.7 33.1 199 62-263 316-529 (582)
8 3b60_A Lipid A export ATP-bind 100.0 1E-50 3.5E-55 396.0 30.8 199 62-263 316-529 (582)
9 3nh6_A ATP-binding cassette SU 100.0 4.7E-51 1.6E-55 369.5 23.8 202 59-263 23-239 (306)
10 3g5u_A MCG1178, multidrug resi 100.0 1.2E-48 4E-53 409.9 29.1 202 62-264 359-576 (1284)
11 2pze_A Cystic fibrosis transme 100.0 7.6E-48 2.6E-52 335.1 19.5 170 87-257 5-174 (229)
12 2cbz_A Multidrug resistance-as 100.0 7.6E-47 2.6E-51 330.4 19.2 168 88-256 3-170 (237)
13 3g5u_A MCG1178, multidrug resi 100.0 1.6E-45 5.5E-50 386.2 29.5 201 62-263 1002-1220(1284)
14 2ff7_A Alpha-hemolysin translo 100.0 8.3E-46 2.9E-50 325.8 22.3 172 87-260 6-191 (247)
15 2ghi_A Transport protein; mult 100.0 4.3E-45 1.5E-49 323.5 21.6 172 87-260 16-201 (260)
16 2ixe_A Antigen peptide transpo 100.0 7E-45 2.4E-49 324.0 22.3 174 86-260 14-202 (271)
17 1mv5_A LMRA, multidrug resista 100.0 6.4E-46 2.2E-50 325.6 15.1 170 88-260 1-185 (243)
18 2bbs_A Cystic fibrosis transme 100.0 4E-44 1.4E-48 322.0 18.5 188 62-257 16-203 (290)
19 3gd7_A Fusion complex of cysti 100.0 4E-44 1.4E-48 333.7 18.6 168 86-255 17-197 (390)
20 3tif_A Uncharacterized ABC tra 100.0 3.4E-43 1.1E-47 307.0 17.2 162 88-260 1-191 (235)
21 3fvq_A Fe(3+) IONS import ATP- 100.0 4.4E-42 1.5E-46 316.4 20.9 156 88-257 4-182 (359)
22 3gfo_A Cobalt import ATP-bindi 100.0 2.6E-42 9E-47 308.0 18.8 160 87-260 6-189 (275)
23 3tui_C Methionine import ATP-b 100.0 3.2E-42 1.1E-46 317.7 19.3 163 86-260 22-209 (366)
24 2pcj_A ABC transporter, lipopr 100.0 3.7E-42 1.3E-46 298.3 17.6 158 88-260 4-186 (224)
25 1ji0_A ABC transporter; ATP bi 100.0 8.9E-42 3.1E-46 298.8 19.4 159 87-260 5-185 (240)
26 3rlf_A Maltose/maltodextrin im 100.0 6E-42 2.1E-46 317.6 17.8 159 88-261 3-180 (381)
27 2olj_A Amino acid ABC transpor 100.0 1.3E-41 4.6E-46 301.6 18.5 158 88-260 24-205 (263)
28 1g6h_A High-affinity branched- 100.0 1.3E-41 4.3E-46 300.6 18.2 158 88-260 7-199 (257)
29 1b0u_A Histidine permease; ABC 100.0 2E-41 6.8E-46 300.3 18.3 158 88-260 6-199 (262)
30 1sgw_A Putative ABC transporte 100.0 9.9E-42 3.4E-46 293.9 15.8 153 87-255 9-175 (214)
31 1vpl_A ABC transporter, ATP-bi 100.0 3.2E-41 1.1E-45 298.1 19.3 159 87-260 14-192 (256)
32 2nq2_C Hypothetical ABC transp 100.0 3.6E-41 1.2E-45 297.2 19.4 160 88-261 4-175 (253)
33 2yyz_A Sugar ABC transporter, 100.0 3.5E-41 1.2E-45 310.7 20.0 158 88-260 3-179 (359)
34 4g1u_C Hemin import ATP-bindin 100.0 2.8E-41 9.6E-46 300.0 18.5 160 87-261 10-194 (266)
35 1z47_A CYSA, putative ABC-tran 100.0 2.4E-41 8.1E-46 311.4 18.5 161 86-260 12-191 (355)
36 2yz2_A Putative ABC transporte 100.0 6.2E-41 2.1E-45 297.7 19.9 161 88-260 2-184 (266)
37 1v43_A Sugar-binding transport 100.0 6.7E-41 2.3E-45 310.2 19.2 158 88-260 11-187 (372)
38 3d31_A Sulfate/molybdate ABC t 100.0 5.5E-41 1.9E-45 308.4 18.3 158 88-261 1-174 (348)
39 2it1_A 362AA long hypothetical 100.0 4E-41 1.4E-45 310.7 17.3 158 88-260 3-179 (362)
40 2ihy_A ABC transporter, ATP-bi 100.0 5.8E-41 2E-45 299.9 17.3 160 86-260 19-207 (279)
41 1oxx_K GLCV, glucose, ABC tran 100.0 6.3E-41 2.1E-45 308.7 17.6 158 88-260 3-186 (353)
42 2onk_A Molybdate/tungstate ABC 100.0 6.5E-41 2.2E-45 293.5 15.8 154 89-260 2-172 (240)
43 1g29_1 MALK, maltose transport 100.0 1.9E-40 6.4E-45 307.4 18.4 159 88-261 3-186 (372)
44 2d2e_A SUFC protein; ABC-ATPas 100.0 1.9E-40 6.5E-45 292.0 14.1 158 88-260 3-189 (250)
45 2pjz_A Hypothetical protein ST 100.0 4.3E-40 1.5E-44 292.0 15.9 155 88-255 1-170 (263)
46 2qi9_C Vitamin B12 import ATP- 100.0 1.4E-39 4.8E-44 286.5 17.9 153 88-260 4-179 (249)
47 2zu0_C Probable ATP-dependent 100.0 2E-39 6.8E-44 288.2 16.8 160 87-260 19-210 (267)
48 3bk7_A ABC transporter ATP-bin 100.0 1.7E-33 5.7E-38 275.5 15.2 159 87-261 356-518 (607)
49 3ozx_A RNAse L inhibitor; ATP 100.0 2.2E-33 7.5E-38 271.3 14.9 159 87-261 268-432 (538)
50 1yqt_A RNAse L inhibitor; ATP- 100.0 2E-33 6.7E-38 271.8 14.1 159 87-261 286-448 (538)
51 2iw3_A Elongation factor 3A; a 100.0 7.7E-32 2.6E-36 273.7 16.7 165 87-254 670-942 (986)
52 3bk7_A ABC transporter ATP-bin 100.0 5E-32 1.7E-36 265.1 11.7 157 88-261 83-275 (607)
53 1yqt_A RNAse L inhibitor; ATP- 100.0 7.1E-32 2.4E-36 260.9 10.8 156 89-261 21-205 (538)
54 3j16_B RLI1P; ribosome recycli 100.0 6.9E-31 2.3E-35 256.9 13.4 155 92-260 350-513 (608)
55 2iw3_A Elongation factor 3A; a 100.0 1.5E-28 5E-33 249.7 18.1 151 87-255 434-590 (986)
56 3j16_B RLI1P; ribosome recycli 100.0 6.4E-29 2.2E-33 242.9 13.6 154 93-261 82-268 (608)
57 3ozx_A RNAse L inhibitor; ATP 100.0 1.4E-29 4.8E-34 244.7 8.0 150 93-260 4-184 (538)
58 3ux8_A Excinuclease ABC, A sub 100.0 2.6E-29 9E-34 248.5 7.6 152 104-260 31-250 (670)
59 2v9p_A Replication protein E1; 99.9 1.8E-31 6.1E-36 240.9 -15.8 157 61-253 75-233 (305)
60 3ux8_A Excinuclease ABC, A sub 99.9 2.6E-26 8.9E-31 227.1 12.4 53 207-260 537-592 (670)
61 2npi_A Protein CLP1; CLP1-PCF1 99.9 1.3E-28 4.5E-33 233.7 -9.8 130 109-247 130-276 (460)
62 4aby_A DNA repair protein RECN 99.9 3.8E-25 1.3E-29 206.0 10.0 46 214-260 296-343 (415)
63 3pih_A Uvrabc system protein A 99.9 5.8E-24 2E-28 215.5 16.4 55 206-261 798-855 (916)
64 3b85_A Phosphate starvation-in 99.9 6.7E-27 2.3E-31 200.3 -7.3 118 104-254 13-141 (208)
65 2vf7_A UVRA2, excinuclease ABC 99.9 1E-23 3.4E-28 212.1 12.8 53 207-260 724-779 (842)
66 3aez_A Pantothenate kinase; tr 99.9 8.3E-27 2.8E-31 211.3 -9.3 139 86-245 41-208 (312)
67 4gp7_A Metallophosphoesterase; 99.9 8.3E-25 2.8E-29 181.0 2.9 115 109-249 1-119 (171)
68 1tq4_A IIGP1, interferon-induc 99.9 2.4E-26 8.2E-31 215.3 -7.9 137 104-255 36-208 (413)
69 2ygr_A Uvrabc system protein A 99.9 4.8E-23 1.6E-27 208.9 13.5 54 206-260 856-912 (993)
70 2r6f_A Excinuclease ABC subuni 99.9 3.2E-23 1.1E-27 209.6 12.0 54 206-260 838-894 (972)
71 1z6g_A Guanylate kinase; struc 99.9 6.1E-26 2.1E-30 195.1 -10.5 132 106-255 12-169 (218)
72 1e69_A Chromosome segregation 99.9 9.2E-23 3.1E-27 185.0 9.8 151 108-260 16-269 (322)
73 1ye8_A Protein THEP1, hypothet 99.9 2.2E-23 7.4E-28 174.2 1.6 108 119-254 2-124 (178)
74 3sop_A Neuronal-specific septi 99.9 2.9E-24 1E-28 190.8 -5.9 113 119-249 4-131 (270)
75 3b9q_A Chloroplast SRP recepto 99.8 3.9E-23 1.3E-27 186.3 -4.4 130 107-253 90-242 (302)
76 3qf7_A RAD50; ABC-ATPase, ATPa 99.8 1.2E-20 3.9E-25 174.3 10.4 52 208-260 274-331 (365)
77 2og2_A Putative signal recogni 99.8 2.6E-22 9E-27 184.8 -3.3 130 108-254 148-300 (359)
78 2pt7_A CAG-ALFA; ATPase, prote 99.8 1.3E-20 4.4E-25 171.8 3.1 92 106-242 160-251 (330)
79 2f1r_A Molybdopterin-guanine d 99.8 8.3E-22 2.9E-26 163.7 -9.1 98 118-235 3-125 (171)
80 2eyu_A Twitching motility prot 99.8 7.6E-22 2.6E-26 174.4 -10.5 155 105-263 15-230 (261)
81 2jeo_A Uridine-cytidine kinase 99.8 1E-20 3.4E-25 164.8 -4.6 127 103-247 11-149 (245)
82 2dpy_A FLII, flagellum-specifi 99.7 1.3E-19 4.4E-24 171.0 0.2 142 87-260 130-294 (438)
83 1pui_A ENGB, probable GTP-bind 99.7 2.2E-20 7.5E-25 157.2 -5.2 155 88-257 3-194 (210)
84 1lw7_A Transcriptional regulat 99.7 8.5E-21 2.9E-25 174.7 -11.0 135 107-241 158-329 (365)
85 3asz_A Uridine kinase; cytidin 99.7 3.8E-20 1.3E-24 156.7 -6.2 121 114-254 3-141 (211)
86 2ewv_A Twitching motility prot 99.7 6.6E-21 2.3E-25 176.3 -12.3 138 106-247 127-317 (372)
87 2o8b_B DNA mismatch repair pro 99.7 3.1E-18 1.1E-22 175.9 4.6 138 87-262 749-899 (1022)
88 1odf_A YGR205W, hypothetical 3 99.7 6.7E-20 2.3E-24 164.3 -7.6 128 115-247 29-168 (290)
89 2o5v_A DNA replication and rep 99.7 6.7E-17 2.3E-21 148.8 11.2 44 213-256 265-317 (359)
90 2qnr_A Septin-2, protein NEDD5 99.7 3.3E-19 1.1E-23 160.3 -4.7 131 92-249 2-146 (301)
91 1znw_A Guanylate kinase, GMP k 99.7 1.6E-19 5.5E-24 153.2 -7.3 139 104-260 9-173 (207)
92 2i3b_A HCR-ntpase, human cance 99.7 1.4E-18 4.8E-23 146.4 -2.5 111 117-252 1-128 (189)
93 3qkt_A DNA double-strand break 99.7 4.3E-16 1.5E-20 142.0 13.3 50 210-260 245-300 (339)
94 1ewq_A DNA mismatch repair pro 99.7 3.4E-17 1.1E-21 163.7 5.0 125 87-255 549-683 (765)
95 2obl_A ESCN; ATPase, hydrolase 99.6 9E-17 3.1E-21 147.3 6.3 150 87-254 44-202 (347)
96 1tf7_A KAIC; homohexamer, hexa 99.6 8.9E-17 3E-21 154.6 6.5 118 111-254 275-398 (525)
97 3thx_B DNA mismatch repair pro 99.6 1.2E-16 4.2E-21 162.1 7.0 139 88-262 640-783 (918)
98 1pzn_A RAD51, DNA repair and r 99.6 5E-17 1.7E-21 149.1 2.6 108 105-247 118-247 (349)
99 2qag_C Septin-7; cell cycle, c 99.6 7.1E-18 2.4E-22 158.2 -3.3 134 87-249 10-158 (418)
100 2gza_A Type IV secretion syste 99.6 2.4E-18 8.2E-23 158.5 -6.9 137 90-227 137-301 (361)
101 1rj9_A FTSY, signal recognitio 99.6 2.6E-16 9E-21 141.8 6.4 116 116-248 101-238 (304)
102 1cr0_A DNA primase/helicase; R 99.6 1.9E-16 6.5E-21 141.0 2.9 122 105-244 23-160 (296)
103 3szr_A Interferon-induced GTP- 99.6 5.7E-18 1.9E-22 165.8 -7.6 139 88-262 10-182 (608)
104 2qag_B Septin-6, protein NEDD5 99.6 3.4E-16 1.2E-20 146.7 4.6 157 88-255 16-200 (427)
105 3thx_A DNA mismatch repair pro 99.6 3E-15 1E-19 152.3 11.8 130 87-261 630-771 (934)
106 4a74_A DNA repair and recombin 99.6 2.9E-16 9.8E-21 133.6 3.1 47 113-159 21-67 (231)
107 3c8u_A Fructokinase; YP_612366 99.6 1.1E-18 3.6E-23 148.3 -12.0 113 114-241 19-140 (208)
108 1zp6_A Hypothetical protein AT 99.6 1.9E-16 6.7E-21 131.4 1.6 123 113-254 5-142 (191)
109 3jvv_A Twitching mobility prot 99.6 2.3E-15 7.8E-20 138.4 6.2 118 92-255 92-217 (356)
110 1tf7_A KAIC; homohexamer, hexa 99.6 1.9E-17 6.5E-22 159.3 -8.8 50 103-152 24-76 (525)
111 1nlf_A Regulatory protein REPA 99.5 7.1E-15 2.4E-19 130.0 7.2 118 113-248 26-152 (279)
112 1lvg_A Guanylate kinase, GMP k 99.5 6.1E-18 2.1E-22 142.9 -12.2 123 115-255 2-148 (198)
113 2vf7_A UVRA2, excinuclease ABC 99.5 2.6E-14 9E-19 143.9 11.8 53 207-260 373-427 (842)
114 1htw_A HI0065; nucleotide-bind 99.5 7.4E-16 2.5E-20 126.2 -1.4 79 93-175 12-99 (158)
115 2rcn_A Probable GTPase ENGC; Y 99.5 2.9E-15 9.8E-20 137.7 1.8 114 105-229 204-329 (358)
116 2bbw_A Adenylate kinase 4, AK4 99.5 2.4E-16 8.2E-21 136.9 -6.2 131 116-254 26-191 (246)
117 2w0m_A SSO2452; RECA, SSPF, un 99.5 5.4E-14 1.9E-18 119.2 5.9 135 104-255 9-149 (235)
118 1wb9_A DNA mismatch repair pro 99.4 6.3E-14 2.2E-18 140.8 6.8 134 88-262 577-717 (800)
119 2ehv_A Hypothetical protein PH 99.4 1.8E-14 6.1E-19 123.9 0.7 57 89-152 7-67 (251)
120 1f2t_B RAD50 ABC-ATPase; DNA d 99.4 1.9E-13 6.6E-18 110.6 6.7 51 209-260 53-109 (148)
121 2qm8_A GTPase/ATPase; G protei 99.4 3.4E-15 1.2E-19 136.2 -5.2 161 89-257 30-256 (337)
122 1p9r_A General secretion pathw 99.4 2.6E-15 8.8E-20 140.8 -6.6 114 106-236 158-314 (418)
123 1s96_A Guanylate kinase, GMP k 99.4 3.7E-14 1.3E-18 121.9 -0.1 55 111-165 10-75 (219)
124 2yhs_A FTSY, cell division pro 99.4 2.5E-13 8.6E-18 129.2 4.3 131 107-255 283-436 (503)
125 1udx_A The GTP-binding protein 99.4 3E-13 1E-17 126.7 4.4 126 107-249 147-284 (416)
126 2yv5_A YJEQ protein; hydrolase 99.3 8.5E-14 2.9E-18 125.0 -0.5 102 112-226 160-300 (302)
127 3kta_B Chromosome segregation 99.3 2.9E-12 9.8E-17 106.3 6.8 50 210-260 61-114 (173)
128 3e70_C DPA, signal recognition 99.3 7.9E-13 2.7E-17 120.2 2.9 121 113-254 125-265 (328)
129 3pih_A Uvrabc system protein A 99.3 5.7E-13 1.9E-17 135.2 1.4 115 135-260 386-512 (916)
130 2x8a_A Nuclear valosin-contain 99.3 2.8E-15 9.5E-20 132.9 -13.8 131 105-257 34-191 (274)
131 2cvh_A DNA repair and recombin 99.3 6.1E-12 2.1E-16 106.0 7.3 111 105-247 7-121 (220)
132 1nij_A Hypothetical protein YJ 99.2 3.3E-14 1.1E-18 128.5 -8.2 118 118-240 5-166 (318)
133 1sq5_A Pantothenate kinase; P- 99.2 2.8E-13 9.4E-18 121.9 -5.9 61 87-152 36-120 (308)
134 2ygr_A Uvrabc system protein A 99.2 7.1E-11 2.4E-15 120.2 10.3 53 207-260 515-569 (993)
135 1u0l_A Probable GTPase ENGC; p 99.2 4.4E-12 1.5E-16 113.7 1.2 88 112-200 164-289 (301)
136 3euj_A Chromosome partition pr 99.1 1.8E-11 6.1E-16 116.4 4.6 46 106-152 19-64 (483)
137 2r6f_A Excinuclease ABC subuni 99.1 4.4E-11 1.5E-15 121.3 7.4 53 207-260 498-552 (972)
138 1n0w_A DNA repair protein RAD5 99.1 4.9E-11 1.7E-15 101.9 6.2 31 113-143 20-52 (243)
139 1vma_A Cell division protein F 99.1 2.1E-11 7.2E-16 109.8 3.9 99 109-242 96-197 (306)
140 1t9h_A YLOQ, probable GTPase E 99.1 8.3E-12 2.8E-16 112.4 0.5 61 112-173 168-248 (307)
141 3ec2_A DNA replication protein 99.1 2E-11 6.7E-16 100.5 2.5 37 111-147 32-68 (180)
142 2kjq_A DNAA-related protein; s 99.1 2.2E-10 7.7E-15 92.3 7.3 35 106-146 30-64 (149)
143 1ls1_A Signal recognition part 99.1 3.2E-10 1.1E-14 101.4 8.5 125 89-252 77-202 (295)
144 1sxj_E Activator 1 40 kDa subu 99.1 2E-10 6.9E-15 103.8 7.1 107 118-254 37-156 (354)
145 4ad8_A DNA repair protein RECN 99.0 1.5E-10 5E-15 111.0 5.3 45 211-255 394-441 (517)
146 3tr0_A Guanylate kinase, GMP k 99.0 3.2E-11 1.1E-15 100.6 -0.8 59 111-173 1-73 (205)
147 1in4_A RUVB, holliday junction 99.0 2.1E-12 7.1E-17 117.2 -10.3 80 90-173 20-123 (334)
148 1iy2_A ATP-dependent metallopr 98.9 7.3E-13 2.5E-17 116.8 -13.4 137 91-256 52-222 (278)
149 3lda_A DNA repair protein RAD5 98.9 9.2E-10 3.2E-14 102.5 6.1 34 113-146 174-209 (400)
150 1oix_A RAS-related protein RAB 98.9 1.3E-09 4.3E-14 90.4 6.3 135 119-259 31-189 (191)
151 3lnc_A Guanylate kinase, GMP k 98.9 3.1E-10 1.1E-14 97.1 2.5 55 105-162 15-82 (231)
152 1ixz_A ATP-dependent metallopr 98.9 8.5E-13 2.9E-17 114.6 -14.3 138 90-256 27-198 (254)
153 1w1w_A Structural maintenance 98.9 1.4E-09 4.9E-14 101.7 6.6 44 212-255 332-379 (430)
154 3auy_A DNA double-strand break 98.9 1.8E-09 6.1E-14 99.3 6.6 45 211-255 278-329 (371)
155 3a00_A Guanylate kinase, GMP k 98.9 2E-10 6.8E-15 95.3 0.0 118 117-239 1-169 (186)
156 3k1j_A LON protease, ATP-depen 98.9 3.4E-11 1.2E-15 117.6 -5.8 144 104-254 47-223 (604)
157 2px0_A Flagellar biosynthesis 98.9 3.2E-09 1.1E-13 94.9 7.4 98 115-251 103-200 (296)
158 1cke_A CK, MSSA, protein (cyti 98.8 3.6E-11 1.2E-15 102.0 -6.6 114 117-241 5-150 (227)
159 1ni3_A YCHF GTPase, YCHF GTP-b 98.8 2.2E-10 7.6E-15 106.3 -2.2 116 113-254 16-164 (392)
160 2oap_1 GSPE-2, type II secreti 98.8 1.2E-09 4.2E-14 104.7 1.8 69 105-173 248-327 (511)
161 1qhl_A Protein (cell division 98.7 1.9E-10 6.6E-15 99.2 -4.4 54 88-152 9-62 (227)
162 3nwj_A ATSK2; P loop, shikimat 98.7 1.4E-09 4.7E-14 95.2 -0.5 53 87-141 16-72 (250)
163 2f9l_A RAB11B, member RAS onco 98.7 1E-08 3.6E-13 85.0 4.7 37 222-260 130-166 (199)
164 4e22_A Cytidylate kinase; P-lo 98.7 7E-10 2.4E-14 96.6 -3.4 59 115-173 25-114 (252)
165 3vaa_A Shikimate kinase, SK; s 98.6 1.2E-08 4E-13 85.3 3.5 44 98-141 6-49 (199)
166 2bdt_A BH3686; alpha-beta prot 98.6 3.6E-09 1.2E-13 87.4 -0.2 54 117-173 2-63 (189)
167 2qtf_A Protein HFLX, GTP-bindi 98.6 3.1E-08 1.1E-12 91.0 5.6 134 119-258 181-350 (364)
168 3kta_A Chromosome segregation 98.6 4.5E-08 1.6E-12 80.1 5.6 38 108-146 18-55 (182)
169 2j41_A Guanylate kinase; GMP, 98.6 3.2E-08 1.1E-12 82.3 4.0 35 112-146 1-35 (207)
170 3uie_A Adenylyl-sulfate kinase 98.5 6.3E-09 2.1E-13 87.0 -1.1 48 104-152 12-61 (200)
171 3tqc_A Pantothenate kinase; bi 98.5 3.9E-09 1.3E-13 95.5 -3.5 125 104-246 73-211 (321)
172 1kgd_A CASK, peripheral plasma 98.4 6E-08 2E-12 79.8 2.4 34 115-148 3-37 (180)
173 4eun_A Thermoresistant glucoki 98.4 9.4E-08 3.2E-12 79.8 3.0 59 111-173 23-94 (200)
174 2qt1_A Nicotinamide riboside k 98.4 2.6E-07 9E-12 77.2 4.5 45 112-166 16-60 (207)
175 3ney_A 55 kDa erythrocyte memb 98.3 2.8E-07 9.7E-12 77.6 3.1 63 111-176 13-98 (197)
176 4a1f_A DNAB helicase, replicat 98.3 3.4E-07 1.2E-11 83.3 3.4 107 105-245 34-141 (338)
177 3t34_A Dynamin-related protein 98.3 8.5E-07 2.9E-11 80.8 6.0 45 105-152 25-71 (360)
178 1rz3_A Hypothetical protein rb 98.3 2.1E-07 7.3E-12 77.8 1.6 38 113-150 18-55 (201)
179 2zr9_A Protein RECA, recombina 98.3 6.2E-07 2.1E-11 81.9 4.7 94 113-244 57-152 (349)
180 3tau_A Guanylate kinase, GMP k 98.3 5.3E-07 1.8E-11 75.9 4.0 29 115-143 6-34 (208)
181 2xau_A PRE-mRNA-splicing facto 98.2 1.7E-07 5.8E-12 94.0 1.0 125 113-256 105-234 (773)
182 2vp4_A Deoxynucleoside kinase; 98.2 3.7E-07 1.3E-11 78.0 2.8 39 110-152 13-51 (230)
183 1svm_A Large T antigen; AAA+ f 98.2 2.8E-07 9.4E-12 85.1 1.3 128 105-242 157-312 (377)
184 2dr3_A UPF0273 protein PH0284; 98.2 4.9E-06 1.7E-10 70.5 8.9 38 105-142 10-49 (247)
185 1zu4_A FTSY; GTPase, signal re 98.2 3.5E-07 1.2E-11 82.6 1.6 44 107-150 95-138 (320)
186 3ice_A Transcription terminati 98.2 2.9E-07 9.9E-12 85.1 0.6 54 87-142 132-199 (422)
187 2r6a_A DNAB helicase, replicat 98.2 1.9E-06 6.4E-11 81.1 6.0 125 104-245 190-327 (454)
188 1knq_A Gluconate kinase; ALFA/ 98.2 7.3E-07 2.5E-11 72.3 2.7 34 115-152 6-39 (175)
189 2ce7_A Cell division protein F 98.2 9.2E-07 3.2E-11 84.0 3.8 80 106-242 40-119 (476)
190 3cr8_A Sulfate adenylyltranfer 98.2 5.8E-07 2E-11 86.8 2.3 40 113-152 365-406 (552)
191 2dy1_A Elongation factor G; tr 98.1 3.2E-07 1.1E-11 90.5 -0.1 62 111-173 3-79 (665)
192 2e87_A Hypothetical protein PH 98.1 5.2E-06 1.8E-10 75.5 6.6 46 211-257 229-275 (357)
193 1w1w_A Structural maintenance 98.0 2.7E-06 9.4E-11 79.3 3.6 49 88-145 6-54 (430)
194 2p67_A LAO/AO transport system 98.0 1.1E-06 3.8E-11 79.7 0.5 46 105-150 44-89 (341)
195 1kag_A SKI, shikimate kinase I 98.0 2.9E-06 9.9E-11 68.4 2.8 28 116-143 3-30 (173)
196 3bh0_A DNAB-like replicative h 97.9 7.3E-06 2.5E-10 73.4 5.3 109 105-245 56-165 (315)
197 2pez_A Bifunctional 3'-phospho 97.9 2.8E-06 9.5E-11 69.2 2.0 36 115-151 3-40 (179)
198 4eaq_A DTMP kinase, thymidylat 97.9 5E-06 1.7E-10 71.2 3.3 41 107-148 13-56 (229)
199 1f2t_A RAD50 ABC-ATPase; DNA d 97.9 6.4E-06 2.2E-10 65.9 3.5 30 108-138 15-44 (149)
200 1m7g_A Adenylylsulfate kinase; 97.8 3.2E-06 1.1E-10 71.0 0.6 41 112-152 20-62 (211)
201 2www_A Methylmalonic aciduria 97.8 6.1E-06 2.1E-10 75.2 2.4 36 115-150 72-107 (349)
202 4ad8_A DNA repair protein RECN 97.8 6.1E-06 2.1E-10 78.9 2.5 34 106-140 50-83 (517)
203 3m6a_A ATP-dependent protease 97.7 5E-06 1.7E-10 80.1 0.6 47 105-152 97-143 (543)
204 3kl4_A SRP54, signal recogniti 97.7 3E-05 1E-09 72.7 5.7 35 116-150 96-130 (433)
205 3b9p_A CG5977-PA, isoform A; A 97.7 4.8E-05 1.7E-09 66.6 6.6 77 115-246 52-128 (297)
206 1f6b_A SAR1; gtpases, N-termin 97.7 1E-05 3.5E-10 66.9 1.9 55 95-152 6-68 (198)
207 3lxx_A GTPase IMAP family memb 97.7 0.00026 9E-09 60.1 10.6 28 119-146 31-58 (239)
208 1fnn_A CDC6P, cell division co 97.7 0.00018 6.3E-09 64.7 10.1 31 115-145 40-72 (389)
209 1y63_A LMAJ004144AAA protein; 97.7 1.9E-05 6.6E-10 64.7 3.2 32 109-140 2-33 (184)
210 1m2o_B GTP-binding protein SAR 97.7 3.2E-05 1.1E-09 63.4 4.3 46 106-152 13-66 (190)
211 2qor_A Guanylate kinase; phosp 97.6 2.1E-05 7E-10 65.6 2.5 30 113-142 8-37 (204)
212 2yvu_A Probable adenylyl-sulfa 97.6 1.7E-05 5.9E-10 64.9 2.0 37 112-148 8-44 (186)
213 2ffh_A Protein (FFH); SRP54, s 97.6 2.5E-05 8.5E-10 73.1 2.8 52 92-150 80-131 (425)
214 2gj8_A MNME, tRNA modification 97.6 9.1E-05 3.1E-09 59.7 5.9 27 115-141 2-28 (172)
215 3qks_A DNA double-strand break 97.6 3.7E-05 1.3E-09 64.5 3.5 29 109-138 16-44 (203)
216 2dhr_A FTSH; AAA+ protein, hex 97.6 2.3E-05 7.9E-10 74.7 2.3 44 105-152 54-97 (499)
217 2z43_A DNA repair and recombin 97.6 0.00021 7.2E-09 64.0 8.5 107 113-245 103-217 (324)
218 1j8m_F SRP54, signal recogniti 97.5 1.7E-05 5.7E-10 70.7 0.4 42 108-150 89-131 (297)
219 1mky_A Probable GTP-binding pr 97.5 8.1E-05 2.8E-09 69.5 5.1 36 118-153 181-228 (439)
220 3llm_A ATP-dependent RNA helic 97.5 3.3E-05 1.1E-09 65.8 1.9 129 113-256 72-202 (235)
221 1jjv_A Dephospho-COA kinase; P 97.5 5.7E-05 2E-09 62.6 3.3 21 119-139 4-24 (206)
222 3hr8_A Protein RECA; alpha and 97.4 4.5E-05 1.5E-09 69.7 2.5 43 106-148 48-92 (356)
223 2ohf_A Protein OLA1, GTP-bindi 97.4 6.5E-05 2.2E-09 69.6 3.6 40 113-152 18-68 (396)
224 2if2_A Dephospho-COA kinase; a 97.4 6.5E-05 2.2E-09 62.1 3.0 21 119-139 3-23 (204)
225 2wji_A Ferrous iron transport 97.4 0.0003 1E-08 55.9 6.9 23 119-141 5-27 (165)
226 3t61_A Gluconokinase; PSI-biol 97.4 5.1E-05 1.7E-09 62.8 1.9 25 117-141 18-42 (202)
227 2wjg_A FEOB, ferrous iron tran 97.4 0.00018 6.3E-09 57.9 5.2 22 119-140 9-30 (188)
228 4ag6_A VIRB4 ATPase, type IV s 97.3 0.00013 4.5E-09 66.8 4.2 47 103-150 19-68 (392)
229 2zej_A Dardarin, leucine-rich 97.3 0.00012 4E-09 59.5 3.3 25 119-143 4-28 (184)
230 1np6_A Molybdopterin-guanine d 97.3 9.8E-05 3.3E-09 60.7 2.8 28 117-144 6-33 (174)
231 2qag_A Septin-2, protein NEDD5 97.3 1.9E-05 6.5E-10 72.1 -1.8 52 87-147 16-67 (361)
232 1ega_A Protein (GTP-binding pr 97.3 8.6E-05 2.9E-09 66.0 2.3 26 116-141 7-32 (301)
233 2p5t_B PEZT; postsegregational 97.3 6.6E-05 2.2E-09 64.8 1.5 38 113-152 28-65 (253)
234 3cm0_A Adenylate kinase; ATP-b 97.3 0.00012 4.3E-09 59.3 2.9 25 115-139 2-26 (186)
235 1sxj_C Activator 1 40 kDa subu 97.2 3.6E-05 1.2E-09 69.2 -0.9 43 104-146 31-75 (340)
236 2ius_A DNA translocase FTSK; n 97.2 0.00014 4.9E-09 69.4 3.3 42 109-150 159-202 (512)
237 1qhx_A CPT, protein (chloramph 97.2 0.00022 7.4E-09 57.4 3.7 26 117-142 3-28 (178)
238 2ga8_A Hypothetical 39.9 kDa p 97.2 6.5E-05 2.2E-09 68.6 0.6 37 105-141 10-48 (359)
239 2q6t_A DNAB replication FORK h 97.2 0.0005 1.7E-08 64.3 6.4 38 105-142 188-225 (444)
240 3kb2_A SPBC2 prophage-derived 97.2 0.00021 7.1E-09 56.9 3.3 24 118-141 2-25 (173)
241 1gtv_A TMK, thymidylate kinase 97.1 7.3E-05 2.5E-09 62.0 0.0 26 119-144 2-27 (214)
242 1kht_A Adenylate kinase; phosp 97.1 0.00028 9.4E-09 57.2 3.5 25 117-141 3-27 (192)
243 2rhm_A Putative kinase; P-loop 97.1 0.00026 8.8E-09 57.6 3.2 27 115-141 3-29 (193)
244 1q3t_A Cytidylate kinase; nucl 97.1 0.00027 9.3E-09 60.1 3.5 26 114-139 13-38 (236)
245 3lw7_A Adenylate kinase relate 97.1 0.00027 9.3E-09 56.0 3.1 20 118-137 2-21 (179)
246 1lv7_A FTSH; alpha/beta domain 97.1 0.0002 6.8E-09 61.5 2.5 34 107-142 37-70 (257)
247 1uf9_A TT1252 protein; P-loop, 97.1 0.00029 1E-08 57.7 3.4 24 117-140 8-31 (203)
248 3r20_A Cytidylate kinase; stru 97.1 0.00011 3.9E-09 63.2 0.8 25 116-140 8-32 (233)
249 2v54_A DTMP kinase, thymidylat 97.0 0.00038 1.3E-08 57.2 3.8 26 116-141 3-28 (204)
250 3auy_A DNA double-strand break 97.0 0.00041 1.4E-08 63.3 4.1 31 107-138 16-46 (371)
251 1gvn_B Zeta; postsegregational 97.0 0.00035 1.2E-08 61.7 3.3 35 115-151 31-65 (287)
252 2z4s_A Chromosomal replication 97.0 0.00049 1.7E-08 64.3 4.6 26 117-142 130-155 (440)
253 1ex7_A Guanylate kinase; subst 97.0 0.00028 9.7E-09 58.6 2.5 23 119-141 3-25 (186)
254 3trf_A Shikimate kinase, SK; a 97.0 0.00041 1.4E-08 56.2 3.5 26 116-141 4-29 (185)
255 1ypw_A Transitional endoplasmi 97.0 0.00029 9.8E-09 70.9 3.0 33 111-143 232-264 (806)
256 1vht_A Dephospho-COA kinase; s 97.0 0.00041 1.4E-08 57.9 3.3 24 116-139 3-26 (218)
257 3iij_A Coilin-interacting nucl 96.9 0.00029 9.9E-09 57.0 2.2 26 115-140 9-34 (180)
258 2jaq_A Deoxyguanosine kinase; 96.9 0.00041 1.4E-08 56.7 3.1 23 119-141 2-24 (205)
259 2wwf_A Thymidilate kinase, put 96.9 0.00051 1.7E-08 56.7 3.6 27 115-141 8-34 (212)
260 2c95_A Adenylate kinase 1; tra 96.9 0.00051 1.7E-08 55.9 3.6 27 115-141 7-33 (196)
261 1nn5_A Similar to deoxythymidy 96.9 0.00051 1.7E-08 56.8 3.6 28 114-141 6-33 (215)
262 2plr_A DTMP kinase, probable t 96.9 0.00052 1.8E-08 56.4 3.5 28 116-143 3-30 (213)
263 2ze6_A Isopentenyl transferase 96.9 0.00045 1.5E-08 59.7 3.0 24 118-141 2-25 (253)
264 1jal_A YCHF protein; nucleotid 96.9 0.00084 2.9E-08 61.4 4.8 36 117-152 2-48 (363)
265 3ihw_A Centg3; RAS, centaurin, 96.9 0.001 3.5E-08 54.0 4.9 35 119-153 22-65 (184)
266 1ly1_A Polynucleotide kinase; 96.9 0.00057 2E-08 54.7 3.3 22 118-139 3-24 (181)
267 3k53_A Ferrous iron transport 96.9 0.0013 4.3E-08 57.1 5.6 47 119-165 5-62 (271)
268 3cf0_A Transitional endoplasmi 96.8 0.00045 1.5E-08 61.1 2.5 39 111-151 43-81 (301)
269 3bgw_A DNAB-like replicative h 96.8 0.0015 5.3E-08 61.1 6.1 35 106-140 186-220 (444)
270 1tev_A UMP-CMP kinase; ploop, 96.8 0.0007 2.4E-08 54.8 3.3 25 117-141 3-27 (196)
271 1via_A Shikimate kinase; struc 96.8 0.00061 2.1E-08 54.9 2.8 23 119-141 6-28 (175)
272 2bwj_A Adenylate kinase 5; pho 96.8 0.0003 1E-08 57.5 0.9 28 114-141 9-36 (199)
273 2vli_A Antibiotic resistance p 96.8 0.00052 1.8E-08 55.3 2.3 27 115-141 3-29 (183)
274 1nks_A Adenylate kinase; therm 96.7 0.00076 2.6E-08 54.5 3.2 24 119-142 3-26 (194)
275 1fzq_A ADP-ribosylation factor 96.7 0.0015 5.1E-08 52.7 4.8 29 118-146 17-49 (181)
276 2eyu_A Twitching motility prot 96.7 0.0012 4.2E-08 57.4 4.6 32 221-255 88-119 (261)
277 2erx_A GTP-binding protein DI- 96.7 0.0018 6.1E-08 50.8 4.8 22 119-140 5-26 (172)
278 1xjc_A MOBB protein homolog; s 96.7 0.00064 2.2E-08 55.6 2.2 26 118-143 5-30 (169)
279 1aky_A Adenylate kinase; ATP:A 96.7 0.0011 3.7E-08 55.5 3.7 27 115-141 2-28 (220)
280 2z0h_A DTMP kinase, thymidylat 96.7 0.00095 3.3E-08 54.3 3.2 23 119-141 2-24 (197)
281 1z0j_A RAB-22, RAS-related pro 96.6 0.0015 5.3E-08 51.1 4.1 23 119-141 8-30 (170)
282 1z2a_A RAS-related protein RAB 96.6 0.0014 4.8E-08 51.2 3.8 23 119-141 7-29 (168)
283 1zd8_A GTP:AMP phosphotransfer 96.6 0.0011 3.9E-08 55.7 3.5 27 115-141 5-31 (227)
284 2ged_A SR-beta, signal recogni 96.6 0.0011 3.7E-08 53.6 3.1 25 118-142 49-73 (193)
285 2cdn_A Adenylate kinase; phosp 96.6 0.0014 4.7E-08 54.0 3.6 26 116-141 19-44 (201)
286 4fcw_A Chaperone protein CLPB; 96.6 0.00098 3.3E-08 58.3 2.8 31 118-148 48-78 (311)
287 2ce2_X GTPase HRAS; signaling 96.6 0.0012 4E-08 51.3 3.0 23 119-141 5-27 (166)
288 3q72_A GTP-binding protein RAD 96.6 0.0011 3.9E-08 51.9 2.9 24 119-142 4-27 (166)
289 3ake_A Cytidylate kinase; CMP 96.6 0.0012 4E-08 54.3 3.1 23 119-141 4-26 (208)
290 1ukz_A Uridylate kinase; trans 96.6 0.0013 4.6E-08 54.0 3.4 26 116-141 14-39 (203)
291 1kao_A RAP2A; GTP-binding prot 96.5 0.0013 4.3E-08 51.2 3.1 22 119-140 5-26 (167)
292 2nzj_A GTP-binding protein REM 96.5 0.0014 4.7E-08 51.7 3.3 23 119-141 6-28 (175)
293 1zak_A Adenylate kinase; ATP:A 96.5 0.0013 4.3E-08 55.2 3.1 26 116-141 4-29 (222)
294 3fb4_A Adenylate kinase; psych 96.5 0.0013 4.5E-08 54.6 3.2 23 119-141 2-24 (216)
295 2lkc_A Translation initiation 96.5 0.0018 6E-08 51.4 3.8 25 116-140 7-31 (178)
296 2dyk_A GTP-binding protein; GT 96.5 0.0014 4.7E-08 51.0 3.1 23 119-141 3-25 (161)
297 1v5w_A DMC1, meiotic recombina 96.5 0.0017 5.8E-08 58.6 4.1 47 113-161 118-166 (343)
298 2pbr_A DTMP kinase, thymidylat 96.5 0.0014 4.7E-08 53.1 3.2 23 119-141 2-24 (195)
299 1ko7_A HPR kinase/phosphatase; 96.5 0.0022 7.6E-08 57.4 4.8 34 105-139 133-166 (314)
300 1u8z_A RAS-related protein RAL 96.5 0.0014 4.8E-08 51.1 3.1 22 119-140 6-27 (168)
301 1g16_A RAS-related protein SEC 96.5 0.0014 4.7E-08 51.4 3.0 23 119-141 5-27 (170)
302 1qf9_A UMP/CMP kinase, protein 96.5 0.0015 5E-08 52.8 3.2 25 117-141 6-30 (194)
303 3q85_A GTP-binding protein REM 96.5 0.0015 5.3E-08 51.2 3.3 23 119-141 4-26 (169)
304 3lxw_A GTPase IMAP family memb 96.5 0.0014 4.9E-08 56.2 3.3 23 119-141 23-45 (247)
305 3iby_A Ferrous iron transport 96.5 0.0047 1.6E-07 53.4 6.6 46 119-164 3-59 (256)
306 1c1y_A RAS-related protein RAP 96.5 0.002 6.7E-08 50.3 3.8 22 119-140 5-26 (167)
307 1e6c_A Shikimate kinase; phosp 96.5 0.0014 4.7E-08 52.3 2.9 24 118-141 3-26 (173)
308 1svi_A GTP-binding protein YSX 96.5 0.0014 4.8E-08 52.9 3.0 25 117-141 23-47 (195)
309 1ky3_A GTP-binding protein YPT 96.5 0.002 6.7E-08 51.1 3.8 23 119-141 10-32 (182)
310 3pqc_A Probable GTP-binding pr 96.5 0.0014 4.9E-08 52.6 3.0 24 118-141 24-47 (195)
311 1ek0_A Protein (GTP-binding pr 96.5 0.002 6.7E-08 50.4 3.7 23 119-141 5-27 (170)
312 3tw8_B RAS-related protein RAB 96.5 0.0014 5E-08 51.8 3.0 23 119-141 11-33 (181)
313 1zuh_A Shikimate kinase; alpha 96.5 0.0017 5.8E-08 51.8 3.4 24 117-140 7-30 (168)
314 1z08_A RAS-related protein RAB 96.5 0.0021 7E-08 50.5 3.8 22 119-140 8-29 (170)
315 2iyv_A Shikimate kinase, SK; t 96.4 0.0014 4.8E-08 53.0 2.9 24 118-141 3-26 (184)
316 3a4m_A L-seryl-tRNA(SEC) kinas 96.4 0.0017 5.6E-08 56.2 3.5 26 115-140 2-27 (260)
317 1wms_A RAB-9, RAB9, RAS-relate 96.4 0.0016 5.4E-08 51.6 3.1 22 119-140 9-30 (177)
318 2fn4_A P23, RAS-related protei 96.4 0.0015 5.3E-08 51.6 3.0 22 119-140 11-32 (181)
319 3dl0_A Adenylate kinase; phosp 96.4 0.0016 5.5E-08 54.1 3.2 23 119-141 2-24 (216)
320 2w58_A DNAI, primosome compone 96.4 0.0017 5.7E-08 53.4 3.2 28 118-145 55-82 (202)
321 2pt5_A Shikimate kinase, SK; a 96.4 0.0018 6E-08 51.4 3.2 22 119-140 2-23 (168)
322 3clv_A RAB5 protein, putative; 96.4 0.0017 5.8E-08 52.2 3.1 22 119-140 9-30 (208)
323 3bos_A Putative DNA replicatio 96.4 0.0014 4.7E-08 54.6 2.5 29 116-144 51-79 (242)
324 1r2q_A RAS-related protein RAB 96.4 0.0018 6.2E-08 50.6 3.1 22 119-140 8-29 (170)
325 2qby_A CDC6 homolog 1, cell di 96.4 0.0012 4.2E-08 58.9 2.3 31 115-145 43-73 (386)
326 2cxx_A Probable GTP-binding pr 96.4 0.0023 7.9E-08 51.2 3.7 23 119-141 3-25 (190)
327 3tlx_A Adenylate kinase 2; str 96.4 0.002 6.9E-08 55.1 3.5 27 115-141 27-53 (243)
328 3b1v_A Ferrous iron uptake tra 96.4 0.0019 6.4E-08 56.5 3.3 23 119-141 5-27 (272)
329 2grj_A Dephospho-COA kinase; T 96.3 0.0019 6.7E-08 53.6 3.2 23 118-140 13-35 (192)
330 3t1o_A Gliding protein MGLA; G 96.3 0.002 6.9E-08 51.7 3.2 24 119-142 16-39 (198)
331 3bc1_A RAS-related protein RAB 96.3 0.0019 6.6E-08 51.6 3.1 22 119-140 13-34 (195)
332 2hxs_A RAB-26, RAS-related pro 96.3 0.0023 7.9E-08 50.7 3.4 23 119-141 8-30 (178)
333 4dsu_A GTPase KRAS, isoform 2B 96.3 0.0027 9.3E-08 50.6 3.8 23 119-141 6-28 (189)
334 1upt_A ARL1, ADP-ribosylation 96.3 0.0021 7.2E-08 50.5 3.1 22 118-139 8-29 (171)
335 1uj2_A Uridine-cytidine kinase 96.3 0.0021 7E-08 55.1 3.2 23 118-140 23-45 (252)
336 2oil_A CATX-8, RAS-related pro 96.3 0.002 7E-08 52.0 3.0 22 119-140 27-48 (193)
337 3t5d_A Septin-7; GTP-binding p 96.3 0.0019 6.4E-08 56.2 3.0 23 119-141 10-32 (274)
338 2y8e_A RAB-protein 6, GH09086P 96.3 0.0027 9.3E-08 50.1 3.7 22 119-140 16-37 (179)
339 1a7j_A Phosphoribulokinase; tr 96.3 0.0011 3.7E-08 58.7 1.3 42 116-163 4-45 (290)
340 1r8s_A ADP-ribosylation factor 96.3 0.0023 7.8E-08 50.0 3.1 21 119-139 2-22 (164)
341 3a8t_A Adenylate isopentenyltr 96.3 0.0027 9.2E-08 57.5 3.9 28 115-142 38-65 (339)
342 1moz_A ARL1, ADP-ribosylation 96.3 0.0015 5E-08 52.2 1.9 24 116-139 17-40 (183)
343 2g6b_A RAS-related protein RAB 96.3 0.0023 7.8E-08 50.8 3.1 23 119-141 12-34 (180)
344 1z0f_A RAB14, member RAS oncog 96.2 0.0023 7.9E-08 50.5 3.1 23 119-141 17-39 (179)
345 3iev_A GTP-binding protein ERA 96.2 0.0023 7.9E-08 56.8 3.3 24 118-141 11-34 (308)
346 3con_A GTPase NRAS; structural 96.2 0.0024 8E-08 51.4 3.1 23 119-141 23-45 (190)
347 2a9k_A RAS-related protein RAL 96.2 0.0024 8.1E-08 50.8 3.1 22 119-140 20-41 (187)
348 1wf3_A GTP-binding protein; GT 96.2 0.0024 8.1E-08 56.7 3.3 23 119-141 9-31 (301)
349 3be4_A Adenylate kinase; malar 96.2 0.0026 9E-08 53.2 3.4 26 116-141 4-29 (217)
350 3t5g_A GTP-binding protein RHE 96.2 0.0046 1.6E-07 49.2 4.7 21 119-139 8-28 (181)
351 2xtp_A GTPase IMAP family memb 96.2 0.0025 8.6E-08 54.5 3.3 24 118-141 23-46 (260)
352 2bme_A RAB4A, RAS-related prot 96.2 0.0032 1.1E-07 50.3 3.7 23 119-141 12-34 (186)
353 2efe_B Small GTP-binding prote 96.2 0.0034 1.2E-07 49.8 3.8 23 119-141 14-36 (181)
354 2f6r_A COA synthase, bifunctio 96.2 0.0027 9.2E-08 55.6 3.4 23 117-139 75-97 (281)
355 4dhe_A Probable GTP-binding pr 96.2 0.0016 5.6E-08 53.9 1.9 24 118-141 30-53 (223)
356 1jbk_A CLPB protein; beta barr 96.2 0.0032 1.1E-07 50.0 3.6 28 115-142 41-68 (195)
357 3tkl_A RAS-related protein RAB 96.2 0.0034 1.2E-07 50.5 3.7 23 119-141 18-40 (196)
358 3kkq_A RAS-related protein M-R 96.2 0.0035 1.2E-07 50.0 3.7 22 119-140 20-41 (183)
359 1vg8_A RAS-related protein RAB 96.2 0.0027 9.3E-08 51.7 3.1 23 119-141 10-32 (207)
360 2bov_A RAla, RAS-related prote 96.1 0.0028 9.5E-08 51.5 3.1 22 119-140 16-37 (206)
361 1nrj_B SR-beta, signal recogni 96.1 0.0028 9.4E-08 52.4 3.1 24 118-141 13-36 (218)
362 2gf0_A GTP-binding protein DI- 96.1 0.0028 9.7E-08 51.2 3.0 22 119-140 10-31 (199)
363 1ksh_A ARF-like protein 2; sma 96.1 0.0029 1E-07 50.7 3.1 25 116-140 17-41 (186)
364 2fg5_A RAB-22B, RAS-related pr 96.1 0.0029 9.8E-08 51.3 3.0 22 119-140 25-46 (192)
365 1jwy_B Dynamin A GTPase domain 96.1 0.0029 9.8E-08 55.6 3.2 24 119-142 26-49 (315)
366 1m7b_A RND3/RHOE small GTP-bin 96.1 0.0037 1.3E-07 50.2 3.7 22 119-140 9-30 (184)
367 2xb4_A Adenylate kinase; ATP-b 96.1 0.003 1E-07 53.1 3.2 23 119-141 2-24 (223)
368 2gf9_A RAS-related protein RAB 96.1 0.003 1E-07 51.0 3.1 23 119-141 24-46 (189)
369 3i8s_A Ferrous iron transport 96.1 0.0031 1.1E-07 54.9 3.3 23 119-141 5-27 (274)
370 3cbq_A GTP-binding protein REM 96.1 0.0025 8.5E-08 52.2 2.4 22 119-140 25-46 (195)
371 1mh1_A RAC1; GTP-binding, GTPa 96.1 0.0033 1.1E-07 50.0 3.1 21 119-139 7-27 (186)
372 1e4v_A Adenylate kinase; trans 96.1 0.0033 1.1E-07 52.3 3.2 23 119-141 2-24 (214)
373 1zbd_A Rabphilin-3A; G protein 96.1 0.0035 1.2E-07 51.1 3.3 23 119-141 10-32 (203)
374 1z06_A RAS-related protein RAB 96.1 0.0033 1.1E-07 50.6 3.1 22 119-140 22-43 (189)
375 3oes_A GTPase rhebl1; small GT 96.0 0.0032 1.1E-07 51.4 3.0 24 118-141 25-48 (201)
376 1ak2_A Adenylate kinase isoenz 96.0 0.0042 1.4E-07 52.5 3.7 26 116-141 15-40 (233)
377 2dby_A GTP-binding protein; GD 96.0 0.0029 9.8E-08 57.9 2.8 22 119-140 3-24 (368)
378 3bwd_D RAC-like GTP-binding pr 96.0 0.0041 1.4E-07 49.3 3.4 24 118-141 9-32 (182)
379 1zj6_A ADP-ribosylation factor 96.0 0.0037 1.3E-07 50.2 3.2 24 117-140 16-39 (187)
380 3dz8_A RAS-related protein RAB 96.0 0.0035 1.2E-07 50.7 3.0 23 119-141 25-47 (191)
381 2wsm_A Hydrogenase expression/ 96.0 0.0034 1.2E-07 52.0 3.0 24 118-141 31-54 (221)
382 2il1_A RAB12; G-protein, GDP, 96.0 0.0034 1.2E-07 50.9 2.9 23 119-141 28-50 (192)
383 2qu8_A Putative nucleolar GTP- 96.0 0.0035 1.2E-07 52.4 3.1 24 118-141 30-53 (228)
384 3llu_A RAS-related GTP-binding 96.0 0.0041 1.4E-07 50.6 3.4 24 119-142 22-45 (196)
385 2a5j_A RAS-related protein RAB 96.0 0.0036 1.2E-07 50.6 3.0 23 119-141 23-45 (191)
386 4bas_A ADP-ribosylation factor 96.0 0.0036 1.2E-07 50.6 3.0 29 118-146 18-52 (199)
387 2o52_A RAS-related protein RAB 96.0 0.0038 1.3E-07 51.0 3.2 23 119-141 27-49 (200)
388 3a1s_A Iron(II) transport prot 96.0 0.0038 1.3E-07 54.0 3.3 23 119-141 7-29 (258)
389 2h57_A ADP-ribosylation factor 96.0 0.003 1E-07 51.0 2.5 24 118-141 22-45 (190)
390 1l8q_A Chromosomal replication 96.0 0.0023 7.7E-08 56.7 1.9 29 116-144 36-64 (324)
391 1x3s_A RAS-related protein RAB 96.0 0.0038 1.3E-07 50.1 3.1 22 119-140 17-38 (195)
392 3exa_A TRNA delta(2)-isopenten 96.0 0.0042 1.5E-07 55.7 3.6 25 117-141 3-27 (322)
393 2bcg_Y Protein YP2, GTP-bindin 96.0 0.0037 1.2E-07 51.1 3.0 23 119-141 10-32 (206)
394 3cph_A RAS-related protein SEC 95.9 0.0038 1.3E-07 51.0 3.1 24 118-141 21-44 (213)
395 4edh_A DTMP kinase, thymidylat 95.9 0.0043 1.5E-07 52.3 3.4 29 115-143 4-32 (213)
396 3v9p_A DTMP kinase, thymidylat 95.9 0.0033 1.1E-07 53.7 2.7 28 115-142 23-50 (227)
397 3cnl_A YLQF, putative uncharac 95.9 0.0044 1.5E-07 53.9 3.6 29 118-146 100-128 (262)
398 2h17_A ADP-ribosylation factor 95.9 0.0035 1.2E-07 50.2 2.8 22 119-140 23-44 (181)
399 2cjw_A GTP-binding protein GEM 95.9 0.0039 1.3E-07 50.9 3.1 21 119-139 8-28 (192)
400 1zd9_A ADP-ribosylation factor 95.9 0.004 1.4E-07 50.3 3.1 22 119-140 24-45 (188)
401 2p5s_A RAS and EF-hand domain 95.9 0.004 1.4E-07 50.8 3.0 26 116-141 27-52 (199)
402 2atv_A RERG, RAS-like estrogen 95.9 0.0041 1.4E-07 50.5 3.1 23 118-140 29-51 (196)
403 2fv8_A H6, RHO-related GTP-bin 95.9 0.0041 1.4E-07 51.1 3.0 24 118-141 26-49 (207)
404 3def_A T7I23.11 protein; chlor 95.9 0.0042 1.4E-07 53.5 3.3 23 119-141 38-60 (262)
405 2ew1_A RAS-related protein RAB 95.9 0.0052 1.8E-07 50.7 3.7 22 119-140 28-49 (201)
406 2aka_B Dynamin-1; fusion prote 95.9 0.0038 1.3E-07 54.2 3.0 23 119-141 28-50 (299)
407 3zvl_A Bifunctional polynucleo 95.9 0.0043 1.5E-07 57.5 3.5 30 112-141 253-282 (416)
408 2ocp_A DGK, deoxyguanosine kin 95.9 0.0046 1.6E-07 52.4 3.4 26 116-141 1-26 (241)
409 3d3q_A TRNA delta(2)-isopenten 95.9 0.0041 1.4E-07 56.3 3.2 25 118-142 8-32 (340)
410 2zts_A Putative uncharacterize 95.9 0.0055 1.9E-07 51.4 3.9 26 113-138 26-51 (251)
411 3reg_A RHO-like small GTPase; 95.9 0.0055 1.9E-07 49.5 3.7 23 119-141 25-47 (194)
412 2f7s_A C25KG, RAS-related prot 95.9 0.0047 1.6E-07 50.9 3.3 23 119-141 27-49 (217)
413 1ltq_A Polynucleotide kinase; 95.9 0.0043 1.5E-07 54.2 3.3 22 118-139 3-24 (301)
414 2j1l_A RHO-related GTP-binding 95.9 0.0047 1.6E-07 51.1 3.3 22 119-140 36-57 (214)
415 3lv8_A DTMP kinase, thymidylat 95.9 0.0051 1.7E-07 52.8 3.5 27 116-142 26-52 (236)
416 1h65_A Chloroplast outer envel 95.9 0.0045 1.5E-07 53.5 3.2 23 119-141 41-63 (270)
417 2q3h_A RAS homolog gene family 95.8 0.0049 1.7E-07 50.1 3.3 24 117-140 20-43 (201)
418 2fh5_B SR-beta, signal recogni 95.8 0.0059 2E-07 50.2 3.8 24 118-141 8-31 (214)
419 2h92_A Cytidylate kinase; ross 95.8 0.0035 1.2E-07 52.1 2.4 25 117-141 3-27 (219)
420 3h4m_A Proteasome-activating n 95.8 0.0046 1.6E-07 53.4 3.2 28 114-141 48-75 (285)
421 2iwr_A Centaurin gamma 1; ANK 95.8 0.0036 1.2E-07 49.7 2.3 22 119-140 9-30 (178)
422 1sky_E F1-ATPase, F1-ATP synth 95.8 0.0021 7.3E-08 60.7 1.0 42 106-148 141-182 (473)
423 4tmk_A Protein (thymidylate ki 95.8 0.0057 1.9E-07 51.6 3.6 27 116-142 2-28 (213)
424 2p65_A Hypothetical protein PF 95.8 0.0044 1.5E-07 49.2 2.8 29 115-143 41-69 (187)
425 3c5c_A RAS-like protein 12; GD 95.8 0.005 1.7E-07 49.8 3.1 22 119-140 23-44 (187)
426 3umf_A Adenylate kinase; rossm 95.8 0.0044 1.5E-07 52.5 2.8 30 112-141 24-53 (217)
427 1gwn_A RHO-related GTP-binding 95.8 0.0062 2.1E-07 50.3 3.7 23 119-141 30-52 (205)
428 1p5z_B DCK, deoxycytidine kina 95.8 0.0031 1.1E-07 54.3 1.9 28 114-141 21-48 (263)
429 2fu5_C RAS-related protein RAB 95.8 0.0032 1.1E-07 50.2 1.8 23 119-141 10-32 (183)
430 2qmh_A HPR kinase/phosphorylas 95.8 0.0068 2.3E-07 50.9 3.8 36 105-141 23-58 (205)
431 3tmk_A Thymidylate kinase; pho 95.8 0.0061 2.1E-07 51.6 3.6 29 115-143 3-31 (216)
432 2i1q_A DNA repair and recombin 95.8 0.0057 2E-07 54.3 3.6 27 113-139 94-120 (322)
433 2b6h_A ADP-ribosylation factor 95.8 0.0049 1.7E-07 50.1 2.9 25 116-140 28-52 (192)
434 2gco_A H9, RHO-related GTP-bin 95.7 0.0067 2.3E-07 49.5 3.7 23 119-141 27-49 (201)
435 3ld9_A DTMP kinase, thymidylat 95.7 0.0063 2.1E-07 51.8 3.5 29 114-142 18-46 (223)
436 3crm_A TRNA delta(2)-isopenten 95.7 0.0046 1.6E-07 55.6 2.7 24 118-141 6-29 (323)
437 2atx_A Small GTP binding prote 95.7 0.0078 2.7E-07 48.5 3.8 22 119-140 20-41 (194)
438 1u94_A RECA protein, recombina 95.6 0.0049 1.7E-07 56.1 2.7 37 105-142 49-88 (356)
439 1njg_A DNA polymerase III subu 95.6 0.0071 2.4E-07 49.7 3.5 25 119-143 47-71 (250)
440 2qz4_A Paraplegin; AAA+, SPG7, 95.6 0.0066 2.3E-07 51.5 3.3 27 115-141 37-63 (262)
441 3foz_A TRNA delta(2)-isopenten 95.6 0.0068 2.3E-07 54.3 3.5 25 117-141 10-34 (316)
442 2hf9_A Probable hydrogenase ni 95.6 0.0062 2.1E-07 50.6 3.0 24 118-141 39-62 (226)
443 3n70_A Transport activator; si 95.6 0.009 3.1E-07 46.6 3.7 32 115-146 22-53 (145)
444 2x77_A ADP-ribosylation factor 95.5 0.0046 1.6E-07 49.7 1.9 24 116-139 21-44 (189)
445 2hup_A RAS-related protein RAB 95.5 0.0071 2.4E-07 49.5 3.0 23 119-141 31-53 (201)
446 4djt_A GTP-binding nuclear pro 95.5 0.0031 1.1E-07 52.0 0.8 23 119-141 13-35 (218)
447 2g3y_A GTP-binding protein GEM 95.5 0.008 2.7E-07 50.3 3.3 22 119-140 39-60 (211)
448 4gzl_A RAS-related C3 botulinu 95.5 0.0074 2.5E-07 49.5 3.0 22 118-139 31-52 (204)
449 1ypw_A Transitional endoplasmi 95.5 0.0025 8.7E-08 64.0 0.2 33 110-142 504-536 (806)
450 2r62_A Cell division protease 95.5 0.0022 7.6E-08 55.0 -0.2 29 111-141 40-68 (268)
451 4dcu_A GTP-binding protein ENG 95.5 0.0061 2.1E-07 57.0 2.7 22 119-140 25-46 (456)
452 2orw_A Thymidine kinase; TMTK, 95.5 0.0071 2.4E-07 49.6 2.8 24 116-139 2-26 (184)
453 2yc2_C IFT27, small RAB-relate 95.4 0.0034 1.2E-07 51.0 0.8 22 119-140 22-43 (208)
454 3cpj_B GTP-binding protein YPT 95.4 0.008 2.7E-07 50.0 3.1 23 119-141 15-37 (223)
455 2v3c_C SRP54, signal recogniti 95.4 0.0023 8E-08 59.8 -0.5 27 118-144 100-126 (432)
456 3r7w_A Gtpase1, GTP-binding pr 95.3 0.0098 3.4E-07 52.6 3.5 26 116-141 2-27 (307)
457 3q3j_B RHO-related GTP-binding 95.3 0.0089 3.1E-07 49.5 3.1 23 118-140 28-50 (214)
458 3tqf_A HPR(Ser) kinase; transf 95.3 0.0099 3.4E-07 48.9 3.1 33 106-139 6-38 (181)
459 1puj_A YLQF, conserved hypothe 95.3 0.012 4.1E-07 51.7 3.9 26 117-142 120-145 (282)
460 3eph_A TRNA isopentenyltransfe 95.3 0.0094 3.2E-07 55.2 3.4 24 118-141 3-26 (409)
461 2j0v_A RAC-like GTP-binding pr 95.3 0.012 4E-07 48.2 3.7 22 119-140 11-32 (212)
462 1sxj_D Activator 1 41 kDa subu 95.3 0.0045 1.5E-07 54.9 1.1 37 106-142 45-83 (353)
463 3dm5_A SRP54, signal recogniti 95.2 0.0091 3.1E-07 55.9 3.0 29 116-144 99-127 (443)
464 4hlc_A DTMP kinase, thymidylat 95.1 0.012 4.2E-07 49.1 3.3 26 117-142 2-27 (205)
465 3syl_A Protein CBBX; photosynt 95.1 0.013 4.3E-07 51.1 3.5 27 116-142 66-92 (309)
466 3sr0_A Adenylate kinase; phosp 95.1 0.012 4.2E-07 49.2 3.2 23 119-141 2-24 (206)
467 3uk6_A RUVB-like 2; hexameric 95.1 0.014 4.7E-07 52.2 3.6 29 115-143 68-96 (368)
468 2v1u_A Cell division control p 95.0 0.01 3.5E-07 52.9 2.7 29 115-143 42-70 (387)
469 2chg_A Replication factor C sm 95.0 0.013 4.3E-07 47.6 3.0 23 119-141 40-62 (226)
470 3p32_A Probable GTPase RV1496/ 95.0 0.012 4.3E-07 53.1 3.1 27 116-142 78-104 (355)
471 3ec1_A YQEH GTPase; atnos1, at 95.0 0.012 4.1E-07 53.6 3.0 25 116-140 161-185 (369)
472 1tue_A Replication protein E1; 94.9 0.01 3.5E-07 50.1 2.3 28 114-141 55-82 (212)
473 2x2e_A Dynamin-1; nitration, h 94.8 0.0093 3.2E-07 53.8 1.9 23 119-141 33-55 (353)
474 1xwi_A SKD1 protein; VPS4B, AA 94.8 0.015 5.3E-07 51.7 3.2 27 115-141 43-69 (322)
475 1xp8_A RECA protein, recombina 94.8 0.013 4.3E-07 53.6 2.7 43 113-161 70-112 (366)
476 3h2y_A GTPase family protein; 94.8 0.013 4.5E-07 53.4 2.7 25 116-140 159-183 (368)
477 3geh_A MNME, tRNA modification 94.7 0.012 4.1E-07 55.4 2.4 26 115-140 222-247 (462)
478 3gj0_A GTP-binding nuclear pro 94.7 0.011 3.9E-07 48.8 2.0 35 220-254 165-204 (221)
479 3t15_A Ribulose bisphosphate c 94.7 0.017 5.9E-07 50.6 3.3 26 116-141 35-60 (293)
480 1wxq_A GTP-binding protein; st 94.7 0.017 5.7E-07 53.3 3.3 23 119-141 2-24 (397)
481 2hjg_A GTP-binding protein ENG 94.7 0.014 4.9E-07 54.1 2.8 22 119-140 5-26 (436)
482 3th5_A RAS-related C3 botulinu 93.7 0.0056 1.9E-07 50.0 0.0 22 118-139 31-52 (204)
483 2vhj_A Ntpase P4, P4; non- hyd 94.7 0.017 5.8E-07 52.0 3.1 29 112-140 118-146 (331)
484 1ofh_A ATP-dependent HSL prote 94.6 0.019 6.5E-07 49.7 3.3 27 116-142 49-75 (310)
485 2qpt_A EH domain-containing pr 94.6 0.016 5.6E-07 55.6 3.0 24 118-141 66-89 (550)
486 3hws_A ATP-dependent CLP prote 94.6 0.015 5.2E-07 52.3 2.6 26 116-141 50-75 (363)
487 1d2n_A N-ethylmaleimide-sensit 94.5 0.018 6.1E-07 49.5 2.9 27 115-141 62-88 (272)
488 2qgz_A Helicase loader, putati 94.5 0.022 7.6E-07 50.5 3.6 26 117-142 152-177 (308)
489 3eie_A Vacuolar protein sortin 94.5 0.022 7.5E-07 50.5 3.4 27 115-141 49-75 (322)
490 1f5n_A Interferon-induced guan 94.5 0.017 5.9E-07 56.0 2.9 25 117-141 38-62 (592)
491 2bjv_A PSP operon transcriptio 94.5 0.033 1.1E-06 47.6 4.4 30 115-144 27-56 (265)
492 2qby_B CDC6 homolog 3, cell di 94.4 0.023 7.8E-07 50.8 3.5 26 116-141 44-69 (384)
493 3pvs_A Replication-associated 94.4 0.011 3.7E-07 55.4 1.3 35 109-143 40-76 (447)
494 1lnz_A SPO0B-associated GTP-bi 94.4 0.021 7.2E-07 51.5 3.2 32 109-140 150-181 (342)
495 3l0i_B RAS-related protein RAB 94.4 0.0038 1.3E-07 50.9 -1.7 23 119-141 35-57 (199)
496 2j69_A Bacterial dynamin-like 94.3 0.022 7.6E-07 56.2 3.4 27 115-141 67-93 (695)
497 3d8b_A Fidgetin-like protein 1 94.3 0.026 8.8E-07 50.9 3.5 27 115-141 115-141 (357)
498 1m8p_A Sulfate adenylyltransfe 94.3 0.024 8.3E-07 54.7 3.5 28 115-142 394-421 (573)
499 4a9a_A Ribosome-interacting GT 94.2 0.038 1.3E-06 50.6 4.5 46 119-164 74-130 (376)
500 2qen_A Walker-type ATPase; unk 94.2 0.028 9.5E-07 49.3 3.5 26 116-141 30-55 (350)
No 1
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=100.00 E-value=5.5e-56 Score=466.31 Aligned_cols=202 Identities=27% Similarity=0.452 Sum_probs=180.5
Q ss_pred HHHHHHHhcCCCCCCcC--CCCCCCCCCcEEEEeEEEEeCCCCCCcceeeceEEEcCCcEEEEEcCCCChHHHHHHHHhc
Q psy1503 62 DRVLNFLLLGEHEPRKI--NSVHSNGKGHVSLDNVTAQWSLQNADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILN 139 (265)
Q Consensus 62 ~ri~~~l~~~~~~~~~~--~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~g 139 (265)
+|+.++++.++..+... ...+....+.|+++||+|+|++..+.++|+|+||+|++|+++|||||||||||||+++|+|
T Consensus 387 ~ri~~~l~~~~~~~~~~~~~~~~~~~~g~I~~~nvsF~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTll~ll~~ 466 (1321)
T 4f4c_A 387 SGIYEVLDRKPVIDSSSKAGRKDMKIKGDITVENVHFTYPSRPDVPILRGMNLRVNAGQTVALVGSSGCGKSTIISLLLR 466 (1321)
T ss_dssp HHHHHHTTTSCCSSCSSSCCCCCCCCCCCEEEEEEEECCSSSTTSCSEEEEEEEECTTCEEEEEECSSSCHHHHHHHHTT
T ss_pred HHHHHHHcCCccccccccccccCCCCCCcEEEEEeeeeCCCCCCCceeeceEEeecCCcEEEEEecCCCcHHHHHHHhcc
Confidence 99999998764322111 1122233467999999999986556789999999999999999999999999999999999
Q ss_pred CcCCCccEEEEcC-------------eEEEEecCCCCccccHHHHHhcCCc-ccHHHHHHHHHHhcchhHHhcCCCCCcc
Q psy1503 140 ELRISSGKVSLGG-------------TVSYASQEPWIFAATIRQNILFGLP-YLRRRYADVIRVCALQDDFDSLPNGDFT 205 (265)
Q Consensus 140 ~~~~~~G~i~~~g-------------~i~~v~Q~~~l~~~ti~eni~~~~~-~~~~~~~~~~~~~~l~~~i~~l~~g~~t 205 (265)
+|+|++|+|.+|| +|+||+|+||||++||+|||.||.+ .+++++.++++.|+++++++.+|+||+|
T Consensus 467 ~~~~~~G~I~idG~~i~~~~~~~lr~~i~~v~Q~~~Lf~~TI~eNI~~g~~~~~~~~v~~a~~~a~l~~~i~~lp~G~~T 546 (1321)
T 4f4c_A 467 YYDVLKGKITIDGVDVRDINLEFLRKNVAVVSQEPALFNCTIEENISLGKEGITREEMVAACKMANAEKFIKTLPNGYNT 546 (1321)
T ss_dssp SSCCSEEEEEETTEETTTSCHHHHHHHEEEECSSCCCCSEEHHHHHHTTCTTCCHHHHHHHHHHTTCHHHHHHSTTTTSS
T ss_pred ccccccCcccCCCccchhccHHHHhhcccccCCcceeeCCchhHHHhhhcccchHHHHHHHHHHccchhHHHcCCCCCcc
Confidence 9999999999999 3999999999999999999999976 5788999999999999999999999999
Q ss_pred ccCCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHHhhcC
Q psy1503 206 VVGERGASLSGGQKARINLARAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGCLTSG 264 (265)
Q Consensus 206 ~vg~~g~~LSgGqrqRialARal~~~~~illLDEp~s~LD~~~~~~i~~~~i~~~l~~~ 264 (265)
.|||+|.+|||||||||+||||+|++|+|||||||||+||+++++ ++++++.+++++|
T Consensus 547 ~vGe~G~~LSGGQkQRiaiARAl~~~~~IliLDE~tSaLD~~te~-~i~~~l~~~~~~~ 604 (1321)
T 4f4c_A 547 LVGDRGTQLSGGQKQRIAIARALVRNPKILLLDEATSALDAESEG-IVQQALDKAAKGR 604 (1321)
T ss_dssp EESSSSCCCCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCTTTHH-HHHHHHHHHHTTS
T ss_pred EecCCCCCCCHHHHHHHHHHHHHccCCCEEEEecccccCCHHHHH-HHHHHHHHHhCCC
Confidence 999999999999999999999999999999999999999999865 5578999998877
No 2
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=100.00 E-value=4.7e-53 Score=444.12 Aligned_cols=202 Identities=27% Similarity=0.436 Sum_probs=178.3
Q ss_pred HHHHHHHhcCCCCCCc-CCCCCCCCCCcEEEEeEEEEeCCCCCCcceeeceEEEcCCcEEEEEcCCCChHHHHHHHHhcC
Q psy1503 62 DRVLNFLLLGEHEPRK-INSVHSNGKGHVSLDNVTAQWSLQNADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNE 140 (265)
Q Consensus 62 ~ri~~~l~~~~~~~~~-~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~g~ 140 (265)
+|+.++++.++..+.. ......+..+.|+|+||+|+|+...+.++|+|+||+|++||.+|||||||||||||+++|+|+
T Consensus 1049 ~ri~~~l~~~~~~~~~~~~~~~~~~~g~I~f~nVsf~Y~~~~~~~VL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl 1128 (1321)
T 4f4c_A 1049 GIIFGMLRKISKIDSLSLAGEKKKLYGKVIFKNVRFAYPERPEIEILKGLSFSVEPGQTLALVGPSGCGKSTVVALLERF 1128 (1321)
T ss_dssp HHHHHHHHCCCSSCTTCCCSBCCCCCCCEEEEEEEECCTTSCSSCSEEEEEEEECTTCEEEEECSTTSSTTSHHHHHTTS
T ss_pred HHHHHHhhCcccCCCccCCCCCCCCCCeEEEEEEEEeCCCCCCCccccceeEEECCCCEEEEECCCCChHHHHHHHHhcC
Confidence 8999999865432211 111222345689999999999865456799999999999999999999999999999999999
Q ss_pred cCCCccEEEEcCe-------------EEEEecCCCCccccHHHHHhcCC---cccHHHHHHHHHHhcchhHHhcCCCCCc
Q psy1503 141 LRISSGKVSLGGT-------------VSYASQEPWIFAATIRQNILFGL---PYLRRRYADVIRVCALQDDFDSLPNGDF 204 (265)
Q Consensus 141 ~~~~~G~i~~~g~-------------i~~v~Q~~~l~~~ti~eni~~~~---~~~~~~~~~~~~~~~l~~~i~~l~~g~~ 204 (265)
++|++|+|.+||. |+||||+|+||++||||||.||. ..++++++++++.+++++++..+|+|++
T Consensus 1129 ~~p~~G~I~iDG~di~~i~~~~lR~~i~~V~Qdp~LF~gTIreNI~~gld~~~~sd~ei~~Al~~a~l~~~I~~Lp~Gld 1208 (1321)
T 4f4c_A 1129 YDTLGGEIFIDGSEIKTLNPEHTRSQIAIVSQEPTLFDCSIAENIIYGLDPSSVTMAQVEEAARLANIHNFIAELPEGFE 1208 (1321)
T ss_dssp SCCSSSEEEETTEETTTBCHHHHHTTEEEECSSCCCCSEEHHHHHSSSSCTTTSCHHHHHHHHHHTTCHHHHHTSTTTTC
T ss_pred ccCCCCEEEECCEEhhhCCHHHHHhheEEECCCCEeeCccHHHHHhccCCCCCCCHHHHHHHHHHhCChHHHHcCcCCCC
Confidence 9999999999994 99999999999999999999984 3467889999999999999999999999
Q ss_pred cccCCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHHhhcC
Q psy1503 205 TVVGERGASLSGGQKARINLARAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGCLTSG 264 (265)
Q Consensus 205 t~vg~~g~~LSgGqrqRialARal~~~~~illLDEp~s~LD~~~~~~i~~~~i~~~l~~~ 264 (265)
|.|||+|.+|||||||||||||||+++|+|+|||||||+||+++++.| ++.+...++++
T Consensus 1209 T~vge~G~~LSgGQrQriaiARAllr~~~ILiLDEaTSaLD~~tE~~I-q~~l~~~~~~~ 1267 (1321)
T 4f4c_A 1209 TRVGDRGTQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEKVV-QEALDRAREGR 1267 (1321)
T ss_dssp SEETTTSCSSCHHHHHHHHHHHHHHSCCSEEEEESCCCSTTSHHHHHH-HHHHTTTSSSS
T ss_pred CEecCCCcccCHHHHHHHHHHHHHHhCCCEEEEeCccccCCHHHHHHH-HHHHHHHcCCC
Confidence 999999999999999999999999999999999999999999999887 66777776665
No 3
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=100.00 E-value=4.1e-52 Score=405.58 Aligned_cols=201 Identities=25% Similarity=0.448 Sum_probs=173.3
Q ss_pred HHHHHHHhcCCCCCCcCC-CCCCCCCCcEEEEeEEEEeCCCCCCcceeeceEEEcCCcEEEEEcCCCChHHHHHHHHhcC
Q psy1503 62 DRVLNFLLLGEHEPRKIN-SVHSNGKGHVSLDNVTAQWSLQNADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNE 140 (265)
Q Consensus 62 ~ri~~~l~~~~~~~~~~~-~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~g~ 140 (265)
+|+.++++.++..+.... .......+.++++|++|+|+.. ..++|+|+||++++||+++|+||||||||||+++|+|+
T Consensus 312 ~ri~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~-~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~ 390 (578)
T 4a82_A 312 DRVFQLIDEDYDIKNGVGAQPIEIKQGRIDIDHVSFQYNDN-EAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRF 390 (578)
T ss_dssp HHHHHHHTCCCSSCCCTTCCCCCCCSCCEEEEEEEECSCSS-SCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTS
T ss_pred HHHHHHHcCCCcccCCCCccccCCCCCeEEEEEEEEEcCCC-CCcceeeeEEEECCCCEEEEECCCCChHHHHHHHHhcC
Confidence 999999986543221111 1112234579999999999743 35799999999999999999999999999999999999
Q ss_pred cCCCccEEEEcCe-------------EEEEecCCCCccccHHHHHhcCCc-ccHHHHHHHHHHhcchhHHhcCCCCCccc
Q psy1503 141 LRISSGKVSLGGT-------------VSYASQEPWIFAATIRQNILFGLP-YLRRRYADVIRVCALQDDFDSLPNGDFTV 206 (265)
Q Consensus 141 ~~~~~G~i~~~g~-------------i~~v~Q~~~l~~~ti~eni~~~~~-~~~~~~~~~~~~~~l~~~i~~l~~g~~t~ 206 (265)
++|++|+|.++|. ++||||+|++|++||+|||.++.+ ..++++.++++.+++++++..+|+|++|.
T Consensus 391 ~~p~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~g~~t~ 470 (578)
T 4a82_A 391 YDVTSGQILIDGHNIKDFLTGSLRNQIGLVQQDNILFSDTVKENILLGRPTATDEEVVEAAKMANAHDFIMNLPQGYDTE 470 (578)
T ss_dssp SCCSEEEEEETTEEGGGSCHHHHHHTEEEECSSCCCCSSBHHHHHGGGCSSCCHHHHHHHHHHTTCHHHHHTSTTGGGCB
T ss_pred CCCCCcEEEECCEEhhhCCHHHHhhheEEEeCCCccCcccHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhCcchhhhh
Confidence 9999999999993 999999999999999999999865 34667888999999999999999999999
Q ss_pred cCCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHHhhcC
Q psy1503 207 VGERGASLSGGQKARINLARAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGCLTSG 264 (265)
Q Consensus 207 vg~~g~~LSgGqrqRialARal~~~~~illLDEp~s~LD~~~~~~i~~~~i~~~l~~~ 264 (265)
+|++|.+||||||||++||||++++|+++|||||||+||+++++.+. +++..+.+++
T Consensus 471 ~~~~g~~LSgGq~Qrv~lAral~~~p~illlDEpts~LD~~~~~~i~-~~l~~~~~~~ 527 (578)
T 4a82_A 471 VGERGVKLSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQ-EALDVLSKDR 527 (578)
T ss_dssp CCGGGTTSCHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHH-HHHHHHTTTS
T ss_pred hccCCCcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHH-HHHHHHcCCC
Confidence 99999999999999999999999999999999999999999988875 4666655543
No 4
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=100.00 E-value=2e-51 Score=401.44 Aligned_cols=201 Identities=28% Similarity=0.430 Sum_probs=174.2
Q ss_pred HHHHHHHhcCCCCCCcCC-CCCCCCCCcEEEEeEEEEeCCCCCCcceeeceEEEcCCcEEEEEcCCCChHHHHHHHHhcC
Q psy1503 62 DRVLNFLLLGEHEPRKIN-SVHSNGKGHVSLDNVTAQWSLQNADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNE 140 (265)
Q Consensus 62 ~ri~~~l~~~~~~~~~~~-~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~g~ 140 (265)
+|+.++++.++..+.... .......+.|+++|++|+|+.. .+++|+|+||+|++||+++|+||||||||||+++|+|+
T Consensus 314 ~ri~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~-~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~g~ 392 (587)
T 3qf4_A 314 KRVLEVLNEKPAIEEADNALALPNVEGSVSFENVEFRYFEN-TDPVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRL 392 (587)
T ss_dssp HHHHHHHHCCCSCCCCTTCBCCSCCCCCEEEEEEEECSSSS-SCCSEEEEEEEECTTCEEEEECSSSSSHHHHHHTTTTS
T ss_pred HHHHHHHcCCCccCCCCCccccCCCCCcEEEEEEEEEcCCC-CCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 999999986543221111 1112234579999999999643 45799999999999999999999999999999999999
Q ss_pred cCCCccEEEEcCe-------------EEEEecCCCCccccHHHHHhcCCc-ccHHHHHHHHHHhcchhHHhcCCCCCccc
Q psy1503 141 LRISSGKVSLGGT-------------VSYASQEPWIFAATIRQNILFGLP-YLRRRYADVIRVCALQDDFDSLPNGDFTV 206 (265)
Q Consensus 141 ~~~~~G~i~~~g~-------------i~~v~Q~~~l~~~ti~eni~~~~~-~~~~~~~~~~~~~~l~~~i~~l~~g~~t~ 206 (265)
++|++|+|.++|. ++||||+|++|++||+|||.++.+ .+++++.++++.+++++++..+|+|++|.
T Consensus 393 ~~~~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~~~ 472 (587)
T 3qf4_A 393 IDPERGRVEVDELDVRTVKLKDLRGHISAVPQETVLFSGTIKENLKWGREDATDDEIVEAAKIAQIHDFIISLPEGYDSR 472 (587)
T ss_dssp SCCSEEEEEESSSBGGGBCHHHHHHHEEEECSSCCCCSEEHHHHHTTTCSSCCHHHHHHHHHHTTCHHHHHTSSSGGGCE
T ss_pred ccCCCcEEEECCEEcccCCHHHHHhheEEECCCCcCcCccHHHHHhccCCCCCHHHHHHHHHHhCcHHHHHhcccchhhH
Confidence 9999999999983 999999999999999999999865 45677888999999999999999999999
Q ss_pred cCCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHHhhcC
Q psy1503 207 VGERGASLSGGQKARINLARAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGCLTSG 264 (265)
Q Consensus 207 vg~~g~~LSgGqrqRialARal~~~~~illLDEp~s~LD~~~~~~i~~~~i~~~l~~~ 264 (265)
+|++|.+||||||||++|||||+++|+|+|||||||+||++++++|.+ .+..+.+++
T Consensus 473 ~~~~~~~LSgGqrQrv~lARal~~~p~illlDEpts~LD~~~~~~i~~-~l~~~~~~~ 529 (587)
T 3qf4_A 473 VERGGRNFSGGQKQRLSIARALVKKPKVLILDDCTSSVDPITEKRILD-GLKRYTKGC 529 (587)
T ss_dssp ECSSSCSSCHHHHHHHHHHHHHHTCCSEEEEESCCTTSCHHHHHHHHH-HHHHHSTTC
T ss_pred hcCCCCCcCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHH-HHHHhCCCC
Confidence 999999999999999999999999999999999999999999999866 455554443
No 5
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=100.00 E-value=3.8e-52 Score=407.29 Aligned_cols=200 Identities=22% Similarity=0.413 Sum_probs=173.4
Q ss_pred HHHHHHHhcCCCCCCcCCCCCCCCCCcEEEEeEEEEeCCCCCCcceeeceEEEcCCcEEEEEcCCCChHHHHHHHHhcCc
Q psy1503 62 DRVLNFLLLGEHEPRKINSVHSNGKGHVSLDNVTAQWSLQNADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNEL 141 (265)
Q Consensus 62 ~ri~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~g~~ 141 (265)
+|+.++++.++..+...........+.|+++|++|+|++ ..++|+|+||++++|++++|+||||||||||+++|+|++
T Consensus 328 ~ri~~~l~~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~--~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~ 405 (598)
T 3qf4_B 328 ERIFEILDLEEEKDDPDAVELREVRGEIEFKNVWFSYDK--KKPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFY 405 (598)
T ss_dssp HHHHHHTTSCCCCCCSSCCCCCSCCCCEEEEEEECCSSS--SSCSCCSEEEECCTTCEEEEECCTTSSTTHHHHHHTTSS
T ss_pred HHHHHHHcCCCCCCCCCCCCCCCCCCeEEEEEEEEECCC--CCccccceEEEEcCCCEEEEECCCCCcHHHHHHHHhcCc
Confidence 999999987653221111111223457999999999964 356999999999999999999999999999999999999
Q ss_pred CCCccEEEEcCe-------------EEEEecCCCCccccHHHHHhcCCc-ccHHHHHHHHHHhcchhHHhcCCCCCcccc
Q psy1503 142 RISSGKVSLGGT-------------VSYASQEPWIFAATIRQNILFGLP-YLRRRYADVIRVCALQDDFDSLPNGDFTVV 207 (265)
Q Consensus 142 ~~~~G~i~~~g~-------------i~~v~Q~~~l~~~ti~eni~~~~~-~~~~~~~~~~~~~~l~~~i~~l~~g~~t~v 207 (265)
+|++|+|.++|. ++|+||+|++|++||+|||.++.+ .+++++.++++.+++++.++.+|+|++|.+
T Consensus 406 ~p~~G~i~~~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~ 485 (598)
T 3qf4_B 406 DVDRGQILVDGIDIRKIKRSSLRSSIGIVLQDTILFSTTVKENLKYGNPGATDEEIKEAAKLTHSDHFIKHLPEGYETVL 485 (598)
T ss_dssp CCSEEEEEETTEEGGGSCHHHHHHHEEEECTTCCCCSSBHHHHHHSSSTTCCTTHHHHHTTTTTCHHHHHTSTTGGGCBC
T ss_pred CCCCeEEEECCEEhhhCCHHHHHhceEEEeCCCccccccHHHHHhcCCCCCCHHHHHHHHHHhCCHHHHHhccccccchh
Confidence 999999999993 999999999999999999999864 456677888889999999999999999999
Q ss_pred CCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHHhhcC
Q psy1503 208 GERGASLSGGQKARINLARAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGCLTSG 264 (265)
Q Consensus 208 g~~g~~LSgGqrqRialARal~~~~~illLDEp~s~LD~~~~~~i~~~~i~~~l~~~ 264 (265)
|++|.+|||||||||+||||++++|+|+|||||||+||+++++++.+ ++..+.+++
T Consensus 486 ~~~g~~LSgGq~Qrv~iAral~~~p~illlDEpts~LD~~~~~~i~~-~l~~~~~~~ 541 (598)
T 3qf4_B 486 TDNGEDLSQGQRQLLAITRAFLANPKILILDEATSNVDTKTEKSIQA-AMWKLMEGK 541 (598)
T ss_dssp HHHHTTSCHHHHHHHHHHHHHHTCCSEEEECCCCTTCCHHHHHHHHH-HHHHHHTTS
T ss_pred cCCCCCCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHH-HHHHHcCCC
Confidence 99999999999999999999999999999999999999999999854 566655543
No 6
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=100.00 E-value=7.9e-51 Score=397.69 Aligned_cols=201 Identities=28% Similarity=0.428 Sum_probs=172.4
Q ss_pred HHHHHHHhcCCCCCCcCCCCC-CCCCCc-EEEEeEEEEeCCCCCCcceeeceEEEcCCcEEEEEcCCCChHHHHHHHHhc
Q psy1503 62 DRVLNFLLLGEHEPRKINSVH-SNGKGH-VSLDNVTAQWSLQNADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILN 139 (265)
Q Consensus 62 ~ri~~~l~~~~~~~~~~~~~~-~~~~~~-i~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~g 139 (265)
+|+.++++.++..+......+ ....+. |+++|++|+|++..+.++|+|+||++++|++++|+||||||||||+++|+|
T Consensus 313 ~ri~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~vl~~isl~i~~G~~~~ivG~sGsGKSTLl~~l~g 392 (595)
T 2yl4_A 313 GRLWELLEREPKLPFNEGVILNEKSFQGALEFKNVHFAYPARPEVPIFQDFSLSIPSGSVTALVGPSGSGKSTVLSLLLR 392 (595)
T ss_dssp HHHHHHHTCCCSSCSSCSBCCCTTTCCCCEEEEEEEEECSSCTTSEEEEEEEEEECTTCEEEEECCTTSSSTHHHHHHTT
T ss_pred HHHHHHHcCCCccCCCCCCCCCcCCCCCeEEEEEEEEEeCCCCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhc
Confidence 999999986543211111111 122356 999999999974323569999999999999999999999999999999999
Q ss_pred CcCCCccEEEEcCe-------------EEEEecCCCCccccHHHHHhcCCc----ccHHHHHHHHHHhcchhHHhcCCCC
Q psy1503 140 ELRISSGKVSLGGT-------------VSYASQEPWIFAATIRQNILFGLP----YLRRRYADVIRVCALQDDFDSLPNG 202 (265)
Q Consensus 140 ~~~~~~G~i~~~g~-------------i~~v~Q~~~l~~~ti~eni~~~~~----~~~~~~~~~~~~~~l~~~i~~l~~g 202 (265)
+++|++|+|.++|. ++|++|+|++|++|++|||.++.+ .++++++++++.+++++.++.+|+|
T Consensus 393 ~~~p~~G~i~~~g~~i~~~~~~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~g 472 (595)
T 2yl4_A 393 LYDPASGTISLDGHDIRQLNPVWLRSKIGTVSQEPILFSCSIAENIAYGADDPSSVTAEEIQRVAEVANAVAFIRNFPQG 472 (595)
T ss_dssp SSCCSEEEEEETTEETTTBCHHHHHHSEEEECSSCCCCSSBHHHHHHTTSSSTTTSCHHHHHHHHHHTTCHHHHHTSSSG
T ss_pred CcCCCCcEEEECCEEhhhCCHHHHHhceEEEccCCcccCCCHHHHHhhcCCCccccCHHHHHHHHHHcCCHHHHHhCccc
Confidence 99999999999983 999999999999999999999864 3567788999999999999999999
Q ss_pred CccccCCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHHhhc
Q psy1503 203 DFTVVGERGASLSGGQKARINLARAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGCLTS 263 (265)
Q Consensus 203 ~~t~vg~~g~~LSgGqrqRialARal~~~~~illLDEp~s~LD~~~~~~i~~~~i~~~l~~ 263 (265)
++|.+|++|.+||||||||++|||||+++|+++|||||||+||+++++.+.+ .+..+.++
T Consensus 473 ~~~~~~~~~~~LSgGq~qrv~iAral~~~p~illlDEpts~LD~~~~~~i~~-~l~~~~~~ 532 (595)
T 2yl4_A 473 FNTVVGEKGVLLSGGQKQRIAIARALLKNPKILLLDEATSALDAENEYLVQE-ALDRLMDG 532 (595)
T ss_dssp GGCBCSSSSCCCCHHHHHHHHHHHHHHHCCSEEEEECCCSSCCHHHHHHHHH-HHHHHHTT
T ss_pred ccccccCCCCcCCHHHHHHHHHHHHHHcCCCEEEEECcccCCCHHHHHHHHH-HHHHHhcC
Confidence 9999999999999999999999999999999999999999999999988854 55555443
No 7
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=100.00 E-value=8.1e-51 Score=396.72 Aligned_cols=199 Identities=25% Similarity=0.428 Sum_probs=172.0
Q ss_pred HHHHHHHhcCCCCCCcCCCCCCCCCCcEEEEeEEEEeCCCCCCcceeeceEEEcCCcEEEEEcCCCChHHHHHHHHhcCc
Q psy1503 62 DRVLNFLLLGEHEPRKINSVHSNGKGHVSLDNVTAQWSLQNADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNEL 141 (265)
Q Consensus 62 ~ri~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~g~~ 141 (265)
+|+.++++.++..+... .......+.|+++|++|+|++. ++++|+|+||++++||+++|+||||||||||+++|+|++
T Consensus 316 ~ri~~~l~~~~~~~~~~-~~~~~~~~~i~~~~v~~~y~~~-~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTll~~l~g~~ 393 (582)
T 3b5x_A 316 QTLFGLMDLETERDNGK-YEAERVNGEVDVKDVTFTYQGK-EKPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFY 393 (582)
T ss_pred HHHHHHHcCCCcCCCCC-CCCCCCCCeEEEEEEEEEcCCC-CccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 99999998654321111 1111124579999999999642 256999999999999999999999999999999999999
Q ss_pred CCCccEEEEcCe-------------EEEEecCCCCccccHHHHHhcCC--cccHHHHHHHHHHhcchhHHhcCCCCCccc
Q psy1503 142 RISSGKVSLGGT-------------VSYASQEPWIFAATIRQNILFGL--PYLRRRYADVIRVCALQDDFDSLPNGDFTV 206 (265)
Q Consensus 142 ~~~~G~i~~~g~-------------i~~v~Q~~~l~~~ti~eni~~~~--~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~ 206 (265)
+|++|+|.++|. ++|+||+|++|++|++|||.++. ..++++++++++.+++++.++.+|+|++|.
T Consensus 394 ~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~~~~p~g~~t~ 473 (582)
T 3b5x_A 394 DVDSGSICLDGHDVRDYKLTNLRRHFALVSQNVHLFNDTIANNIAYAAEGEYTREQIEQAARQAHAMEFIENMPQGLDTV 473 (582)
T ss_pred CCCCCEEEECCEEhhhCCHHHHhcCeEEEcCCCccccccHHHHHhccCCCCCCHHHHHHHHHHCCCHHHHHhCcccccch
Confidence 999999999983 99999999999999999999986 345677889999999999999999999999
Q ss_pred cCCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHHhhc
Q psy1503 207 VGERGASLSGGQKARINLARAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGCLTS 263 (265)
Q Consensus 207 vg~~g~~LSgGqrqRialARal~~~~~illLDEp~s~LD~~~~~~i~~~~i~~~l~~ 263 (265)
+|++|.+||||||||++||||++++|+++|||||||+||+.+++.+.+ ++..+.++
T Consensus 474 ~~~~~~~LSgGq~qr~~iAral~~~p~illlDEpts~LD~~~~~~i~~-~l~~~~~~ 529 (582)
T 3b5x_A 474 IGENGTSLSGGQRQRVAIARALLRDAPVLILDEATSALDTESERAIQA-ALDELQKN 529 (582)
T ss_pred hcCCCCcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHH-HHHHHcCC
Confidence 999999999999999999999999999999999999999999999854 55555443
No 8
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=100.00 E-value=1e-50 Score=395.96 Aligned_cols=199 Identities=24% Similarity=0.416 Sum_probs=172.4
Q ss_pred HHHHHHHhcCCCCCCcCCCCCCCCCCcEEEEeEEEEeCCCCCCcceeeceEEEcCCcEEEEEcCCCChHHHHHHHHhcCc
Q psy1503 62 DRVLNFLLLGEHEPRKINSVHSNGKGHVSLDNVTAQWSLQNADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNEL 141 (265)
Q Consensus 62 ~ri~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~g~~ 141 (265)
+|+.++++.++..+... .......+.|+++|++|+|++. .+++|+|+||++++||+++|+||||||||||+++|+|++
T Consensus 316 ~ri~~~l~~~~~~~~~~-~~~~~~~~~i~~~~v~~~y~~~-~~~~l~~v~~~i~~G~~~~ivG~sGsGKSTLl~~l~g~~ 393 (582)
T 3b60_A 316 QTLFAILDSEQEKDEGK-RVIDRATGDLEFRNVTFTYPGR-EVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFY 393 (582)
T ss_dssp HHHHHHHHSCCSCCCCC-BCCSCCCCCEEEEEEEECSSSS-SCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTT
T ss_pred HHHHHHHcCCCCccCCC-CCCCCCCCcEEEEEEEEEcCCC-CCccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhhcc
Confidence 99999998764322111 1111224579999999999632 256999999999999999999999999999999999999
Q ss_pred CCCccEEEEcCe-------------EEEEecCCCCccccHHHHHhcCC--cccHHHHHHHHHHhcchhHHhcCCCCCccc
Q psy1503 142 RISSGKVSLGGT-------------VSYASQEPWIFAATIRQNILFGL--PYLRRRYADVIRVCALQDDFDSLPNGDFTV 206 (265)
Q Consensus 142 ~~~~G~i~~~g~-------------i~~v~Q~~~l~~~ti~eni~~~~--~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~ 206 (265)
+|++|+|.++|. ++|+||+|++|++|++|||.++. ..++++++++++.+++++.++.+|+|++|.
T Consensus 394 ~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~l~~~~l~~~~~~~p~g~~~~ 473 (582)
T 3b60_A 394 DIDEGHILMDGHDLREYTLASLRNQVALVSQNVHLFNDTVANNIAYARTEEYSREQIEEAARMAYAMDFINKMDNGLDTI 473 (582)
T ss_dssp CCSEEEEEETTEETTTBCHHHHHHTEEEECSSCCCCSSBHHHHHHTTTTSCCCHHHHHHHHHTTTCHHHHHHSTTGGGSB
T ss_pred CCCCCeEEECCEEccccCHHHHHhhCeEEccCCcCCCCCHHHHHhccCCCCCCHHHHHHHHHHcCCHHHHHhcccccccc
Confidence 999999999983 99999999999999999999986 345677889999999999999999999999
Q ss_pred cCCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHHhhc
Q psy1503 207 VGERGASLSGGQKARINLARAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGCLTS 263 (265)
Q Consensus 207 vg~~g~~LSgGqrqRialARal~~~~~illLDEp~s~LD~~~~~~i~~~~i~~~l~~ 263 (265)
+|++|.+||||||||++||||++++|+++|||||||+||+.+++.+.+ ++..+.++
T Consensus 474 ~~~~~~~LSgGq~qrl~iAral~~~p~illlDEpts~LD~~~~~~i~~-~l~~~~~~ 529 (582)
T 3b60_A 474 IGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQA-ALDELQKN 529 (582)
T ss_dssp CCTTSCSSCHHHHHHHHHHHHHHHCCSEEEEETTTSSCCHHHHHHHHH-HHHHHHTT
T ss_pred ccCCCCCCCHHHHHHHHHHHHHHhCCCEEEEECccccCCHHHHHHHHH-HHHHHhCC
Confidence 999999999999999999999999999999999999999999999854 55555444
No 9
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=100.00 E-value=4.7e-51 Score=369.46 Aligned_cols=202 Identities=27% Similarity=0.430 Sum_probs=173.4
Q ss_pred CCHHHHHHHHhcCCCCCCcC-CCCCCCCCCcEEEEeEEEEeCCCCCCcceeeceEEEcCCcEEEEEcCCCChHHHHHHHH
Q psy1503 59 LSTDRVLNFLLLGEHEPRKI-NSVHSNGKGHVSLDNVTAQWSLQNADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHII 137 (265)
Q Consensus 59 l~~~ri~~~l~~~~~~~~~~-~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~ivG~~GsGKSTLl~~l 137 (265)
.+.+|+.++++.++...... ........+.|+++||+|+|+. ..++|+|+||+|++|++++|+||||||||||+++|
T Consensus 23 ~~~~ri~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~vs~~y~~--~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll 100 (306)
T 3nh6_A 23 IDMENMFDLLKEETEVKDLPGAGPLRFQKGRIEFENVHFSYAD--GRETLQDVSFTVMPGQTLALVGPSGAGKSTILRLL 100 (306)
T ss_dssp CCHHHHHHHHHHHHSCCCCTTCBCCCCSSCCEEEEEEEEESST--TCEEEEEEEEEECTTCEEEEESSSCHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCccccccccccccCCCCCeEEEEEEEEEcCC--CCceeeeeeEEEcCCCEEEEECCCCchHHHHHHHH
Confidence 45599999997543211111 1111122457999999999964 35799999999999999999999999999999999
Q ss_pred hcCcCCCccEEEEcCe-------------EEEEecCCCCccccHHHHHhcCCc-ccHHHHHHHHHHhcchhHHhcCCCCC
Q psy1503 138 LNELRISSGKVSLGGT-------------VSYASQEPWIFAATIRQNILFGLP-YLRRRYADVIRVCALQDDFDSLPNGD 203 (265)
Q Consensus 138 ~g~~~~~~G~i~~~g~-------------i~~v~Q~~~l~~~ti~eni~~~~~-~~~~~~~~~~~~~~l~~~i~~l~~g~ 203 (265)
+|+++|++|+|.++|. |+||+|+|++|++||+|||.++.. ...++++++++.+++.+.+..+|.|+
T Consensus 101 ~gl~~p~~G~I~i~G~~i~~~~~~~~r~~i~~v~Q~~~lf~~Tv~eNi~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~gl 180 (306)
T 3nh6_A 101 FRFYDISSGCIRIDGQDISQVTQASLRSHIGVVPQDTVLFNDTIADNIRYGRVTAGNDEVEAAAQAAGIHDAIMAFPEGY 180 (306)
T ss_dssp TTSSCCSEEEEEETTEETTSBCHHHHHHTEEEECSSCCCCSEEHHHHHHTTSTTCCHHHHHHHHHHHTCHHHHHHSTTGG
T ss_pred HcCCCCCCcEEEECCEEcccCCHHHHhcceEEEecCCccCcccHHHHHHhhcccCCHHHHHHHHHHhCcHHHHHhccchh
Confidence 9999999999999984 999999999999999999999864 45667888999999999999999999
Q ss_pred ccccCCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHHhhc
Q psy1503 204 FTVVGERGASLSGGQKARINLARAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGCLTS 263 (265)
Q Consensus 204 ~t~vg~~g~~LSgGqrqRialARal~~~~~illLDEp~s~LD~~~~~~i~~~~i~~~l~~ 263 (265)
+|.+|++|.+|||||||||+|||||+++|+|+|||||||+||+.++..|++ .+..+.++
T Consensus 181 ~t~~~~~g~~LSGGqrQRvaiARAL~~~p~iLlLDEPts~LD~~~~~~i~~-~l~~l~~~ 239 (306)
T 3nh6_A 181 RTQVGERGLKLSGGEKQRVAIARTILKAPGIILLDEATSALDTSNERAIQA-SLAKVCAN 239 (306)
T ss_dssp GCEESTTSBCCCHHHHHHHHHHHHHHHCCSEEEEECCSSCCCHHHHHHHHH-HHHHHHTT
T ss_pred hhHhcCCcCCCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHH-HHHHHcCC
Confidence 999999999999999999999999999999999999999999999999865 55555444
No 10
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=100.00 E-value=1.2e-48 Score=409.88 Aligned_cols=202 Identities=27% Similarity=0.391 Sum_probs=174.6
Q ss_pred HHHHHHHhcCCCCCC-c-CCCCCCCCCCcEEEEeEEEEeCCCCCCcceeeceEEEcCCcEEEEEcCCCChHHHHHHHHhc
Q psy1503 62 DRVLNFLLLGEHEPR-K-INSVHSNGKGHVSLDNVTAQWSLQNADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILN 139 (265)
Q Consensus 62 ~ri~~~l~~~~~~~~-~-~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~g 139 (265)
+|+.++++.++..+. . ....+....+.|+++|++|+|+.....++|+|+||+|++|+++|||||||||||||+++|+|
T Consensus 359 ~ri~~~l~~~~~~~~~~~~~~~~~~~~g~i~~~~v~~~y~~~~~~~vL~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~g 438 (1284)
T 3g5u_A 359 YEVFKIIDNKPSIDSFSKSGHKPDNIQGNLEFKNIHFSYPSRKEVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQR 438 (1284)
T ss_dssp HHHHHTTSCCCCCSSCCSSCCCCTTCCCCEEEEEEEECCSSTTSCCSEEEEEEEECTTCEEEEECCSSSSHHHHHHHTTT
T ss_pred HHHHHHHcCCCcCCcccccCCCCCCCCCeEEEEEEEEEcCCCCCCcceecceEEEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence 899998876543221 1 11112223467999999999975434579999999999999999999999999999999999
Q ss_pred CcCCCccEEEEcCe-------------EEEEecCCCCccccHHHHHhcCCc-ccHHHHHHHHHHhcchhHHhcCCCCCcc
Q psy1503 140 ELRISSGKVSLGGT-------------VSYASQEPWIFAATIRQNILFGLP-YLRRRYADVIRVCALQDDFDSLPNGDFT 205 (265)
Q Consensus 140 ~~~~~~G~i~~~g~-------------i~~v~Q~~~l~~~ti~eni~~~~~-~~~~~~~~~~~~~~l~~~i~~l~~g~~t 205 (265)
+++|++|+|.++|. |+||+|+|++|++||+|||.+|.+ ...++++++++.+++++++..+|+|++|
T Consensus 439 ~~~~~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~ti~eNi~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t 518 (1284)
T 3g5u_A 439 LYDPLDGMVSIDGQDIRTINVRYLREIIGVVSQEPVLFATTIAENIRYGREDVTMDEIEKAVKEANAYDFIMKLPHQFDT 518 (1284)
T ss_dssp SSCCSEEEEEETTEEGGGSCHHHHHHHEEEECSSCCCCSSCHHHHHHHHCSSCCHHHHHHHHHHTTCHHHHHHSTTGGGC
T ss_pred CCCCCCeEEEECCEEHHhCCHHHHHhheEEEcCCCccCCccHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhccccccc
Confidence 99999999999994 999999999999999999999865 4567888999999999999999999999
Q ss_pred ccCCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHHhhcC
Q psy1503 206 VVGERGASLSGGQKARINLARAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGCLTSG 264 (265)
Q Consensus 206 ~vg~~g~~LSgGqrqRialARal~~~~~illLDEp~s~LD~~~~~~i~~~~i~~~l~~~ 264 (265)
.+|++|.+|||||||||+|||||+++|+|+|||||||+||+++++.+ .+++..+.+++
T Consensus 519 ~~~~~g~~LSgGq~QriaiARal~~~p~iliLDEpts~LD~~~~~~i-~~~l~~~~~~~ 576 (1284)
T 3g5u_A 519 LVGERGAQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAVV-QAALDKAREGR 576 (1284)
T ss_dssp CCSSSSCSSCHHHHHHHHHHHHHHHCCSEEEEESTTCSSCHHHHHHH-HHHHHHHHTTS
T ss_pred cccCCCCccCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHH-HHHHHHHcCCC
Confidence 99999999999999999999999999999999999999999998766 55666665544
No 11
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=100.00 E-value=7.6e-48 Score=335.10 Aligned_cols=170 Identities=45% Similarity=0.795 Sum_probs=154.7
Q ss_pred CcEEEEeEEEEeCCCCCCcceeeceEEEcCCcEEEEEcCCCChHHHHHHHHhcCcCCCccEEEEcCeEEEEecCCCCccc
Q psy1503 87 GHVSLDNVTAQWSLQNADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSLGGTVSYASQEPWIFAA 166 (265)
Q Consensus 87 ~~i~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g~i~~v~Q~~~l~~~ 166 (265)
..|+++|++|+|+.. ..++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.++|++|++++|+.
T Consensus 5 ~~l~~~~l~~~y~~~-~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~i~~v~q~~~~~~~ 83 (229)
T 2pze_A 5 TEVVMENVTAFWEEG-GTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGRISFCSQFSWIMPG 83 (229)
T ss_dssp EEEEEEEEEECSSTT-SCCSEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEECSCEEEECSSCCCCSB
T ss_pred ceEEEEEEEEEeCCC-CceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCccEEEECCEEEEEecCCcccCC
Confidence 479999999999632 3569999999999999999999999999999999999999999999999999999999999999
Q ss_pred cHHHHHhcCCcccHHHHHHHHHHhcchhHHhcCCCCCccccCCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCcCH
Q psy1503 167 TIRQNILFGLPYLRRRYADVIRVCALQDDFDSLPNGDFTVVGERGASLSGGQKARINLARAVYKNADIYLLDDPLSAVDM 246 (265)
Q Consensus 167 ti~eni~~~~~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~vg~~g~~LSgGqrqRialARal~~~~~illLDEp~s~LD~ 246 (265)
|++||+.++......++.++++.+++.+.+..+|.++++.+++++.+||||||||++|||||+++|+++|||||||+||+
T Consensus 84 tv~enl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lllLDEPts~LD~ 163 (229)
T 2pze_A 84 TIKENIIFGVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDV 163 (229)
T ss_dssp CHHHHHHTTSCCCHHHHHHHHHHTTCHHHHTTSTTGGGSCBCTTCTTSCHHHHHHHHHHHHHHSCCSEEEEESTTTTSCH
T ss_pred CHHHHhhccCCcChHHHHHHHHHhCcHHHHHhCcccccccccCCCCcCCHHHHHHHHHHHHHhcCCCEEEEECcccCCCH
Confidence 99999999764444455667778888888999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHH
Q psy1503 247 HVGKHLFEDCI 257 (265)
Q Consensus 247 ~~~~~i~~~~i 257 (265)
.+++.+++.++
T Consensus 164 ~~~~~i~~~l~ 174 (229)
T 2pze_A 164 LTEKEIFESCV 174 (229)
T ss_dssp HHHHHHHHHCC
T ss_pred HHHHHHHHHHH
Confidence 99999877543
No 12
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=100.00 E-value=7.6e-47 Score=330.44 Aligned_cols=168 Identities=47% Similarity=0.839 Sum_probs=152.7
Q ss_pred cEEEEeEEEEeCCCCCCcceeeceEEEcCCcEEEEEcCCCChHHHHHHHHhcCcCCCccEEEEcCeEEEEecCCCCcccc
Q psy1503 88 HVSLDNVTAQWSLQNADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSLGGTVSYASQEPWIFAAT 167 (265)
Q Consensus 88 ~i~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g~i~~v~Q~~~l~~~t 167 (265)
.|+++|++|+|+.. ..++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.++|++|+|++++.|
T Consensus 3 ~l~~~~l~~~y~~~-~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~i~~v~Q~~~~~~~t 81 (237)
T 2cbz_A 3 SITVRNATFTWARS-DPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVAIKGSVAYVPQQAWIQNDS 81 (237)
T ss_dssp CEEEEEEEEESCTT-SCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTCSEEEEEEEEECSCEEEECSSCCCCSEE
T ss_pred eEEEEEEEEEeCCC-CCceeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEEEEcCCCcCCCcC
Confidence 48999999999632 35699999999999999999999999999999999999999999999999999999999998899
Q ss_pred HHHHHhcCCcccHHHHHHHHHHhcchhHHhcCCCCCccccCCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCcCHH
Q psy1503 168 IRQNILFGLPYLRRRYADVIRVCALQDDFDSLPNGDFTVVGERGASLSGGQKARINLARAVYKNADIYLLDDPLSAVDMH 247 (265)
Q Consensus 168 i~eni~~~~~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~vg~~g~~LSgGqrqRialARal~~~~~illLDEp~s~LD~~ 247 (265)
++||+.++.....++..++.+.+++.+.+..+|.+++|.+++++.+||||||||++|||||+++|+++|||||||+||+.
T Consensus 82 v~enl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~ 161 (237)
T 2cbz_A 82 LRENILFGCQLEEPYYRSVIQACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAH 161 (237)
T ss_dssp HHHHHHTTSCCCTTHHHHHHHHTTCHHHHTTSTTGGGSEESTTSBCCCHHHHHHHHHHHHHHHCCSEEEEESTTTTSCHH
T ss_pred HHHHhhCccccCHHHHHHHHHHHhhHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHH
Confidence 99999997654444556777888888888888989999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHH
Q psy1503 248 VGKHLFEDC 256 (265)
Q Consensus 248 ~~~~i~~~~ 256 (265)
++..+++..
T Consensus 162 ~~~~i~~~l 170 (237)
T 2cbz_A 162 VGKHIFENV 170 (237)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHHH
Confidence 999987644
No 13
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=100.00 E-value=1.6e-45 Score=386.20 Aligned_cols=201 Identities=26% Similarity=0.385 Sum_probs=172.2
Q ss_pred HHHHHHHhcCCCCCCcC--CCCCCCCCCcEEEEeEEEEeCCCCCCcceeeceEEEcCCcEEEEEcCCCChHHHHHHHHhc
Q psy1503 62 DRVLNFLLLGEHEPRKI--NSVHSNGKGHVSLDNVTAQWSLQNADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILN 139 (265)
Q Consensus 62 ~ri~~~l~~~~~~~~~~--~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~g 139 (265)
+|+.++++.++...... ...+....+.|+++|++|+|+.....++|+|+||+|++||++||+||||||||||+++|+|
T Consensus 1002 ~ri~~~l~~~~~~~~~~~~~~~~~~~~g~i~~~~v~~~y~~~~~~~~l~~vsl~i~~Ge~v~ivG~sGsGKSTl~~~l~g 1081 (1284)
T 3g5u_A 1002 SHIIRIIEKTPEIDSYSTQGLKPNMLEGNVQFSGVVFNYPTRPSIPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLER 1081 (1284)
T ss_dssp HHHHHHHHSCCSSSSCCSSCCCTTTTSCCEEEEEEEBCCSCGGGCCSBSSCCEEECSSSEEEEECSSSTTHHHHHHHHTT
T ss_pred HHHHHHHcCCCcccccccccccccCCCCcEEEEEEEEECCCCCCCeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhc
Confidence 89999998654322111 1112223467999999999975333479999999999999999999999999999999999
Q ss_pred CcCCCccEEEEcCe-------------EEEEecCCCCccccHHHHHhcCCc---ccHHHHHHHHHHhcchhHHhcCCCCC
Q psy1503 140 ELRISSGKVSLGGT-------------VSYASQEPWIFAATIRQNILFGLP---YLRRRYADVIRVCALQDDFDSLPNGD 203 (265)
Q Consensus 140 ~~~~~~G~i~~~g~-------------i~~v~Q~~~l~~~ti~eni~~~~~---~~~~~~~~~~~~~~l~~~i~~l~~g~ 203 (265)
+++|++|+|.++|. ++||||+|.+|++||+|||.++.+ .+++++.++++.+++++.+..+|+|+
T Consensus 1082 ~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~ti~eNi~~~~~~~~~~~~~i~~~~~~~~~~~~i~~l~~gl 1161 (1284)
T 3g5u_A 1082 FYDPMAGSVFLDGKEIKQLNVQWLRAQLGIVSQEPILFDCSIAENIAYGDNSRVVSYEEIVRAAKEANIHQFIDSLPDKY 1161 (1284)
T ss_dssp SSCCSEEEEESSSSCTTSSCHHHHTTSCEEEESSCCCCSSBHHHHHTCCCSSCCCCHHHHHHHHHHHTCHHHHSSTTTGG
T ss_pred CcCCCCCEEEECCEEcccCCHHHHHhceEEECCCCccccccHHHHHhccCCCCCCCHHHHHHHHHHhCcHHHHHhCcccc
Confidence 99999999999983 999999999999999999999864 35667888899999999999999999
Q ss_pred ccccCCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHHhhc
Q psy1503 204 FTVVGERGASLSGGQKARINLARAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGCLTS 263 (265)
Q Consensus 204 ~t~vg~~g~~LSgGqrqRialARal~~~~~illLDEp~s~LD~~~~~~i~~~~i~~~l~~ 263 (265)
+|.+|++|.+|||||||||+|||||+++|+|+|||||||+||+.+++.|.+ .+....++
T Consensus 1162 dt~vge~G~~LSgGq~Qrv~iARal~~~p~iLiLDEpTs~lD~~~~~~i~~-~l~~~~~~ 1220 (1284)
T 3g5u_A 1162 NTRVGDKGTQLSGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQE-ALDKAREG 1220 (1284)
T ss_dssp GCBCSTTSCSSCHHHHHHHHHHHHHHHCCSSEEEESCSSSCCHHHHHHHHH-HHHHHSSS
T ss_pred ccccCCCCCccCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHH-HHHHhCCC
Confidence 999999999999999999999999999999999999999999999888754 55554443
No 14
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=100.00 E-value=8.3e-46 Score=325.77 Aligned_cols=172 Identities=26% Similarity=0.430 Sum_probs=155.2
Q ss_pred CcEEEEeEEEEeCCCCCCcceeeceEEEcCCcEEEEEcCCCChHHHHHHHHhcCcCCCccEEEEcCe-------------
Q psy1503 87 GHVSLDNVTAQWSLQNADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSLGGT------------- 153 (265)
Q Consensus 87 ~~i~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g~------------- 153 (265)
..|+++|++|+|++. ..++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.
T Consensus 6 ~~~~~~~l~~~y~~~-~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~i~g~~~~~~~~~~~~~~ 84 (247)
T 2ff7_A 6 HDITFRNIRFRYKPD-SPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRRQ 84 (247)
T ss_dssp EEEEEEEEEEESSTT-SCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHH
T ss_pred CceeEEEEEEEeCCC-CcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHHhc
Confidence 469999999999421 246999999999999999999999999999999999999999999999983
Q ss_pred EEEEecCCCCccccHHHHHhcCCc-ccHHHHHHHHHHhcchhHHhcCCCCCccccCCCCCCCCHHHHHHHHHHHHHccCC
Q psy1503 154 VSYASQEPWIFAATIRQNILFGLP-YLRRRYADVIRVCALQDDFDSLPNGDFTVVGERGASLSGGQKARINLARAVYKNA 232 (265)
Q Consensus 154 i~~v~Q~~~l~~~ti~eni~~~~~-~~~~~~~~~~~~~~l~~~i~~l~~g~~t~vg~~g~~LSgGqrqRialARal~~~~ 232 (265)
++|++|++.+|+.|++||+.++.. ...+++.++++.+++.+.+..+|.|+++.+++++.+||||||||++|||||+++|
T Consensus 85 i~~v~Q~~~l~~~tv~enl~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qRv~iAraL~~~p 164 (247)
T 2ff7_A 85 VGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNP 164 (247)
T ss_dssp EEEECSSCCCTTSBHHHHHTTTCTTCCHHHHHHHHHHHTCHHHHHTSTTGGGCBCSTTTTCCCHHHHHHHHHHHHHTTCC
T ss_pred EEEEeCCCccccccHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCcchhhhhhhCCCCCCCHHHHHHHHHHHHHhcCC
Confidence 999999999998999999998753 3455677888889999999999999999999999999999999999999999999
Q ss_pred CEEEEeCCCCCcCHHHHHHHHHHHHHHH
Q psy1503 233 DIYLLDDPLSAVDMHVGKHLFEDCISGC 260 (265)
Q Consensus 233 ~illLDEp~s~LD~~~~~~i~~~~i~~~ 260 (265)
+++|||||||+||+.++..+++ .+..+
T Consensus 165 ~lllLDEPts~LD~~~~~~i~~-~l~~~ 191 (247)
T 2ff7_A 165 KILIFDEATSALDYESEHVIMR-NMHKI 191 (247)
T ss_dssp SEEEECCCCSCCCHHHHHHHHH-HHHHH
T ss_pred CEEEEeCCcccCCHHHHHHHHH-HHHHH
Confidence 9999999999999999999866 44444
No 15
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=100.00 E-value=4.3e-45 Score=323.47 Aligned_cols=172 Identities=23% Similarity=0.445 Sum_probs=153.1
Q ss_pred CcEEEEeEEEEeCCCCCCcceeeceEEEcCCcEEEEEcCCCChHHHHHHHHhcCcCCCccEEEEcCe-------------
Q psy1503 87 GHVSLDNVTAQWSLQNADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSLGGT------------- 153 (265)
Q Consensus 87 ~~i~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g~------------- 153 (265)
..|+++|++|+|+.....++|+|+||+|++|++++|+||||||||||+++|+|+++| +|+|.++|.
T Consensus 16 ~~l~i~~l~~~y~~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~-~G~I~i~g~~i~~~~~~~~~~~ 94 (260)
T 2ghi_A 16 VNIEFSDVNFSYPKQTNHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYDA-EGDIKIGGKNVNKYNRNSIRSI 94 (260)
T ss_dssp CCEEEEEEEECCTTCCSSCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCC-EEEEEETTEEGGGBCHHHHHTT
T ss_pred CeEEEEEEEEEeCCCCcCceeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhccCCC-CeEEEECCEEhhhcCHHHHhcc
Confidence 469999999999643224699999999999999999999999999999999999987 899999983
Q ss_pred EEEEecCCCCccccHHHHHhcCCc-ccHHHHHHHHHHhcchhHHhcCCCCCccccCCCCCCCCHHHHHHHHHHHHHccCC
Q psy1503 154 VSYASQEPWIFAATIRQNILFGLP-YLRRRYADVIRVCALQDDFDSLPNGDFTVVGERGASLSGGQKARINLARAVYKNA 232 (265)
Q Consensus 154 i~~v~Q~~~l~~~ti~eni~~~~~-~~~~~~~~~~~~~~l~~~i~~l~~g~~t~vg~~g~~LSgGqrqRialARal~~~~ 232 (265)
++|++|+|.+|+.|++||+.++.. ...+++.++++.+++.+.+..+|.+++|.+++++.+||||||||++|||||+++|
T Consensus 95 i~~v~Q~~~l~~~tv~enl~~~~~~~~~~~~~~~l~~~~l~~~~~~l~~~~~~~~~~~~~~LSgGqkqRv~lAraL~~~p 174 (260)
T 2ghi_A 95 IGIVPQDTILFNETIKYNILYGKLDATDEEVIKATKSAQLYDFIEALPKKWDTIVGNKGMKLSGGERQRIAIARCLLKDP 174 (260)
T ss_dssp EEEECSSCCCCSEEHHHHHHTTCTTCCHHHHHHHHHHTTCHHHHHTSTTGGGCEESSSSBCCCHHHHHHHHHHHHHHHCC
T ss_pred EEEEcCCCcccccCHHHHHhccCCCCCHHHHHHHHHHhCCHHHHHhccccccccccCCcCcCCHHHHHHHHHHHHHHcCC
Confidence 999999999999999999998753 2345667778888998888899999999999999999999999999999999999
Q ss_pred CEEEEeCCCCCcCHHHHHHHHHHHHHHH
Q psy1503 233 DIYLLDDPLSAVDMHVGKHLFEDCISGC 260 (265)
Q Consensus 233 ~illLDEp~s~LD~~~~~~i~~~~i~~~ 260 (265)
+|+|||||||+||+.++..+++ .+..+
T Consensus 175 ~lllLDEPts~LD~~~~~~i~~-~l~~l 201 (260)
T 2ghi_A 175 KIVIFDEATSSLDSKTEYLFQK-AVEDL 201 (260)
T ss_dssp SEEEEECCCCTTCHHHHHHHHH-HHHHH
T ss_pred CEEEEECccccCCHHHHHHHHH-HHHHh
Confidence 9999999999999999988865 44444
No 16
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=100.00 E-value=7e-45 Score=323.97 Aligned_cols=174 Identities=29% Similarity=0.469 Sum_probs=152.3
Q ss_pred CCcEEEEeEEEEeCCCCCCcceeeceEEEcCCcEEEEEcCCCChHHHHHHHHhcCcCCCccEEEEcCe------------
Q psy1503 86 KGHVSLDNVTAQWSLQNADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSLGGT------------ 153 (265)
Q Consensus 86 ~~~i~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g~------------ 153 (265)
...|+++|++|+|+.....++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.
T Consensus 14 ~~~l~~~~l~~~y~~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~ 93 (271)
T 2ixe_A 14 KGLVKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGKVLLDGEPLVQYDHHYLHT 93 (271)
T ss_dssp CCCEEEEEEEECCTTCTTSCCEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGBCHHHHHH
T ss_pred CceEEEEEEEEEeCCCCCceeeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEEcccCCHHHHhc
Confidence 35799999999996411256999999999999999999999999999999999999999999999983
Q ss_pred -EEEEecCCCCccccHHHHHhcCCcc-cH-HHHHHHHHHhcchhHHhcCCCCCccccCCCCCCCCHHHHHHHHHHHHHcc
Q psy1503 154 -VSYASQEPWIFAATIRQNILFGLPY-LR-RRYADVIRVCALQDDFDSLPNGDFTVVGERGASLSGGQKARINLARAVYK 230 (265)
Q Consensus 154 -i~~v~Q~~~l~~~ti~eni~~~~~~-~~-~~~~~~~~~~~l~~~i~~l~~g~~t~vg~~g~~LSgGqrqRialARal~~ 230 (265)
|+|++|++.+|+.|++|||.++... .. ++..+.++..++.+.+..+|.|+++.+++++.+|||||||||+|||||+.
T Consensus 94 ~i~~v~Q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgGq~QRv~lAraL~~ 173 (271)
T 2ixe_A 94 QVAAVGQEPLLFGRSFRENIAYGLTRTPTMEEITAVAMESGAHDFISGFPQGYDTEVGETGNQLSGGQRQAVALARALIR 173 (271)
T ss_dssp HEEEECSSCCCCSSBHHHHHHTTCSSCCCHHHHHHHHHHHTCHHHHHHSTTGGGSBCCGGGTTSCHHHHHHHHHHHHHTT
T ss_pred cEEEEecCCccccccHHHHHhhhcccCChHHHHHHHHHHHhHHHHHHhhhcchhhhhcCCcCCCCHHHHHHHHHHHHHhc
Confidence 9999999999989999999997532 22 34455566677888899999899999999999999999999999999999
Q ss_pred CCCEEEEeCCCCCcCHHHHHHHHHHHHHHH
Q psy1503 231 NADIYLLDDPLSAVDMHVGKHLFEDCISGC 260 (265)
Q Consensus 231 ~~~illLDEp~s~LD~~~~~~i~~~~i~~~ 260 (265)
+|+|+|||||||+||+.++..+++ .+..+
T Consensus 174 ~p~lllLDEPts~LD~~~~~~i~~-~l~~~ 202 (271)
T 2ixe_A 174 KPRLLILDNATSALDAGNQLRVQR-LLYES 202 (271)
T ss_dssp CCSEEEEESTTTTCCHHHHHHHHH-HHHHC
T ss_pred CCCEEEEECCccCCCHHHHHHHHH-HHHHH
Confidence 999999999999999999988865 44444
No 17
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=100.00 E-value=6.4e-46 Score=325.57 Aligned_cols=170 Identities=25% Similarity=0.474 Sum_probs=153.3
Q ss_pred cEEEEeEEEEeCCCCCCcceeeceEEEcCCcEEEEEcCCCChHHHHHHHHhcCcCCCccEEEEcCe-------------E
Q psy1503 88 HVSLDNVTAQWSLQNADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSLGGT-------------V 154 (265)
Q Consensus 88 ~i~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g~-------------i 154 (265)
+|+++|++|+|++ ..++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|. +
T Consensus 1 ml~~~~l~~~y~~--~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i 78 (243)
T 1mv5_A 1 MLSARHVDFAYDD--SEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLENWRSQI 78 (243)
T ss_dssp CEEEEEEEECSSS--SSCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCSBSCEEETTEESTTTSCSCCTTTC
T ss_pred CEEEEEEEEEeCC--CCceEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHHhhE
Confidence 3789999999942 356999999999999999999999999999999999999999999999883 8
Q ss_pred EEEecCCCCccccHHHHHhcC-C-cccHHHHHHHHHHhcchhHHhcCCCCCccccCCCCCCCCHHHHHHHHHHHHHccCC
Q psy1503 155 SYASQEPWIFAATIRQNILFG-L-PYLRRRYADVIRVCALQDDFDSLPNGDFTVVGERGASLSGGQKARINLARAVYKNA 232 (265)
Q Consensus 155 ~~v~Q~~~l~~~ti~eni~~~-~-~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~vg~~g~~LSgGqrqRialARal~~~~ 232 (265)
+|++|++.+|+.|++||+.++ . ....+++.++++.+++.+.++.+|.|+++.+++++.+||||||||++|||||+++|
T Consensus 79 ~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qrv~lAral~~~p 158 (243)
T 1mv5_A 79 GFVSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNP 158 (243)
T ss_dssp CEECCSSCCCCEEHHHHTTSCTTSCSCHHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCC
T ss_pred EEEcCCCccccccHHHHHhhhccCCCCHHHHHHHHHHhChHHHHHhCccchhchhccCcCcCCHHHHHHHHHHHHHhcCC
Confidence 999999999999999999987 3 23456677888899999999999999999999999999999999999999999999
Q ss_pred CEEEEeCCCCCcCHHHHHHHHHHHHHHH
Q psy1503 233 DIYLLDDPLSAVDMHVGKHLFEDCISGC 260 (265)
Q Consensus 233 ~illLDEp~s~LD~~~~~~i~~~~i~~~ 260 (265)
+++|||||||+||+.+++.+++ .+..+
T Consensus 159 ~lllLDEPts~LD~~~~~~i~~-~l~~~ 185 (243)
T 1mv5_A 159 KILMLDEATASLDSESESMVQK-ALDSL 185 (243)
T ss_dssp SEEEEECCSCSSCSSSCCHHHH-HHHHH
T ss_pred CEEEEECCcccCCHHHHHHHHH-HHHHh
Confidence 9999999999999999988866 34443
No 18
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=100.00 E-value=4e-44 Score=322.00 Aligned_cols=188 Identities=39% Similarity=0.696 Sum_probs=143.6
Q ss_pred HHHHHHHhcCCCCCCcCCCCCCCCCCcEEEEeEEEEeCCCCCCcceeeceEEEcCCcEEEEEcCCCChHHHHHHHHhcCc
Q psy1503 62 DRVLNFLLLGEHEPRKINSVHSNGKGHVSLDNVTAQWSLQNADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNEL 141 (265)
Q Consensus 62 ~ri~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~g~~ 141 (265)
+|+.++++.+..+.... . .......++++|++|.+ .++|+++||+|++|++++|+||||||||||+++|+|++
T Consensus 16 ~~~~~~~~~~~~~~~~~-~-~~~~~~~l~~~~l~~~~-----~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~ 88 (290)
T 2bbs_A 16 EGFGELFEKAKQNNNNR-K-TSNGDDSLSFSNFSLLG-----TPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGEL 88 (290)
T ss_dssp HHHHHHHHHCC-------------------------C-----CCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHTTSS
T ss_pred HHHHHHhcccccccccc-c-ccCCCceEEEEEEEEcC-----ceEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 47888877654221111 1 11223469999999853 35899999999999999999999999999999999999
Q ss_pred CCCccEEEEcCeEEEEecCCCCccccHHHHHhcCCcccHHHHHHHHHHhcchhHHhcCCCCCccccCCCCCCCCHHHHHH
Q psy1503 142 RISSGKVSLGGTVSYASQEPWIFAATIRQNILFGLPYLRRRYADVIRVCALQDDFDSLPNGDFTVVGERGASLSGGQKAR 221 (265)
Q Consensus 142 ~~~~G~i~~~g~i~~v~Q~~~l~~~ti~eni~~~~~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~vg~~g~~LSgGqrqR 221 (265)
+|++|+|.++|.++|++|++.+|+.|++||+. +......++.++++.+++.+.+..+|.++++.+++++.+||||||||
T Consensus 89 ~p~~G~I~~~g~i~~v~Q~~~l~~~tv~enl~-~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~QR 167 (290)
T 2bbs_A 89 EPSEGKIKHSGRISFCSQNSWIMPGTIKENII-GVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRAR 167 (290)
T ss_dssp CEEEEEEECCSCEEEECSSCCCCSSBHHHHHH-TTCCCHHHHHHHHHHTTCHHHHHTSTTGGGCBC----CCCCHHHHHH
T ss_pred CCCCcEEEECCEEEEEeCCCccCcccHHHHhh-CcccchHHHHHHHHHhChHHHHHhccccccchhcCccCcCCHHHHHH
Confidence 99999999999999999999999999999998 54333444556677788888889999999999999999999999999
Q ss_pred HHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHH
Q psy1503 222 INLARAVYKNADIYLLDDPLSAVDMHVGKHLFEDCI 257 (265)
Q Consensus 222 ialARal~~~~~illLDEp~s~LD~~~~~~i~~~~i 257 (265)
++|||||+++|+++|||||||+||+.++..+++..+
T Consensus 168 v~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~ll 203 (290)
T 2bbs_A 168 ISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCV 203 (290)
T ss_dssp HHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHCC
T ss_pred HHHHHHHHCCCCEEEEECCcccCCHHHHHHHHHHHH
Confidence 999999999999999999999999999999877433
No 19
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=100.00 E-value=4e-44 Score=333.70 Aligned_cols=168 Identities=26% Similarity=0.402 Sum_probs=154.7
Q ss_pred CCcEEEEeEEEEeCCCCCCcceeeceEEEcCCcEEEEEcCCCChHHHHHHHHhcCcCCCccEEEEcCe------------
Q psy1503 86 KGHVSLDNVTAQWSLQNADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSLGGT------------ 153 (265)
Q Consensus 86 ~~~i~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g~------------ 153 (265)
...|+++|++|+|+.. ..++|+|+||+|++||+++|+||||||||||+++|+|+++ ++|+|.++|.
T Consensus 17 ~~~i~~~~l~~~y~~~-~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~-~~G~I~i~G~~i~~~~~~~~rr 94 (390)
T 3gd7_A 17 GGQMTVKDLTAKYTEG-GNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGEIQIDGVSWDSITLEQWRK 94 (390)
T ss_dssp SCCEEEEEEEEESSSS-SCCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTCSE-EEEEEEESSCBTTSSCHHHHHH
T ss_pred CCeEEEEEEEEEecCC-CeEEeeceeEEEcCCCEEEEECCCCChHHHHHHHHhCCCC-CCeEEEECCEECCcCChHHHhC
Confidence 3579999999999532 3569999999999999999999999999999999999998 9999999983
Q ss_pred -EEEEecCCCCccccHHHHHhcCCcccHHHHHHHHHHhcchhHHhcCCCCCccccCCCCCCCCHHHHHHHHHHHHHccCC
Q psy1503 154 -VSYASQEPWIFAATIRQNILFGLPYLRRRYADVIRVCALQDDFDSLPNGDFTVVGERGASLSGGQKARINLARAVYKNA 232 (265)
Q Consensus 154 -i~~v~Q~~~l~~~ti~eni~~~~~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~vg~~g~~LSgGqrqRialARal~~~~ 232 (265)
++||+|++.+|+.|++||+.+......+++.++++.+++.+.++.+|.+++|.+++++.+|||||||||+|||||+.+|
T Consensus 95 ~ig~v~Q~~~lf~~tv~enl~~~~~~~~~~v~~~l~~~~L~~~~~~~p~~l~~~i~~~g~~LSGGqrQRvalARAL~~~P 174 (390)
T 3gd7_A 95 AFGVIPQKVFIFSGTFRKNLDPNAAHSDQEIWKVADEVGLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLSKA 174 (390)
T ss_dssp TEEEESCCCCCCSEEHHHHHCTTCCSCHHHHHHHHHHTTCHHHHTTSTTGGGCEECTTTTTSCHHHHHHHHHHHHHHTTC
T ss_pred CEEEEcCCcccCccCHHHHhhhccccCHHHHHHHHHHhCCHHHHhhcccccccccccccccCCHHHHHHHHHHHHHhcCC
Confidence 9999999999999999999865555667788899999999999999999999999999999999999999999999999
Q ss_pred CEEEEeCCCCCcCHHHHHHHHHH
Q psy1503 233 DIYLLDDPLSAVDMHVGKHLFED 255 (265)
Q Consensus 233 ~illLDEp~s~LD~~~~~~i~~~ 255 (265)
+++|||||||+||+.++.++.+.
T Consensus 175 ~lLLLDEPts~LD~~~~~~l~~~ 197 (390)
T 3gd7_A 175 KILLLDEPSAHLDPVTYQIIRRT 197 (390)
T ss_dssp CEEEEESHHHHSCHHHHHHHHHH
T ss_pred CEEEEeCCccCCCHHHHHHHHHH
Confidence 99999999999999999888653
No 20
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=100.00 E-value=3.4e-43 Score=306.98 Aligned_cols=162 Identities=27% Similarity=0.452 Sum_probs=131.9
Q ss_pred cEEEEeEEEEeCCCC-CCcceeeceEEEcCCcEEEEEcCCCChHHHHHHHHhcCcCCCccEEEEcCe-------------
Q psy1503 88 HVSLDNVTAQWSLQN-ADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSLGGT------------- 153 (265)
Q Consensus 88 ~i~~~~~~~~~~~~~-~~~~l~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g~------------- 153 (265)
+|+++|++|+|+... ..++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.
T Consensus 1 ~l~~~~l~~~y~~~~~~~~~L~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~ 80 (235)
T 3tif_A 1 MVKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKI 80 (235)
T ss_dssp CEEEEEEEEEEEETTEEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHH
T ss_pred CEEEEEEEEEeCCCCcceeeEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHH
Confidence 378999999996421 236899999999999999999999999999999999999999999999982
Q ss_pred ----EEEEecCCCCccc-cHHHHHhcCC------ccc----HHHHHHHHHHhcchhHHhcCCCCCccccCCCCCCCCHHH
Q psy1503 154 ----VSYASQEPWIFAA-TIRQNILFGL------PYL----RRRYADVIRVCALQDDFDSLPNGDFTVVGERGASLSGGQ 218 (265)
Q Consensus 154 ----i~~v~Q~~~l~~~-ti~eni~~~~------~~~----~~~~~~~~~~~~l~~~i~~l~~g~~t~vg~~g~~LSgGq 218 (265)
++|++|++.+|+. |++||+.++. ... .++..++++.+++.+.. ....+.+|||||
T Consensus 81 ~~~~i~~v~Q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~----------~~~~~~~LSgGq 150 (235)
T 3tif_A 81 RRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERF----------ANHKPNQLSGGQ 150 (235)
T ss_dssp HHHHEEEECTTCCCCTTSCHHHHHHHHHHTCSSSCCCHHHHHHHHHHHHHHTTCCGGG----------TTCCGGGSCHHH
T ss_pred hhccEEEEecCCccCCCCcHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHHCCCChhh----------hhCChhhCCHHH
Confidence 9999999999975 9999998742 111 12233344444443221 235567999999
Q ss_pred HHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHH
Q psy1503 219 KARINLARAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGC 260 (265)
Q Consensus 219 rqRialARal~~~~~illLDEp~s~LD~~~~~~i~~~~i~~~ 260 (265)
|||++|||||+.+|+++|||||||+||+.++..+++ .+..+
T Consensus 151 ~QRv~iAral~~~p~llllDEPts~LD~~~~~~i~~-~l~~l 191 (235)
T 3tif_A 151 QQRVAIARALANNPPIILADQPTWALDSKTGEKIMQ-LLKKL 191 (235)
T ss_dssp HHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHH-HHHHH
T ss_pred HHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHH-HHHHH
Confidence 999999999999999999999999999999999876 34444
No 21
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=100.00 E-value=4.4e-42 Score=316.40 Aligned_cols=156 Identities=32% Similarity=0.542 Sum_probs=135.7
Q ss_pred cEEEEeEEEEeCCCCCCcceeeceEEEcCCcEEEEEcCCCChHHHHHHHHhcCcCCCccEEEEcCe--------------
Q psy1503 88 HVSLDNVTAQWSLQNADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSLGGT-------------- 153 (265)
Q Consensus 88 ~i~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g~-------------- 153 (265)
.|+++|++++|+ ...+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.
T Consensus 4 ~l~i~~ls~~y~---~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~i~~~~~~~~~~~r 80 (359)
T 3fvq_A 4 ALHIGHLSKSFQ---NTPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEISLSGKTIFSKNTNLPVRER 80 (359)
T ss_dssp CEEEEEEEEEET---TEEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCSEEEEEETTEEEESSSCBCCGGGS
T ss_pred EEEEEeEEEEEC---CEEEEEeeEEEEcCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEECcccccccchhhC
Confidence 589999999995 356999999999999999999999999999999999999999999999883
Q ss_pred -EEEEecCCCCcc-ccHHHHHhcCCcc-------cHHHHHHHHHHhcchhHHhcCCCCCccccCCCCCCCCHHHHHHHHH
Q psy1503 154 -VSYASQEPWIFA-ATIRQNILFGLPY-------LRRRYADVIRVCALQDDFDSLPNGDFTVVGERGASLSGGQKARINL 224 (265)
Q Consensus 154 -i~~v~Q~~~l~~-~ti~eni~~~~~~-------~~~~~~~~~~~~~l~~~i~~l~~g~~t~vg~~g~~LSgGqrqRial 224 (265)
||||+|++.+|+ .||+|||.|+... ..+++.++++.+++.+..+ ....+|||||||||+|
T Consensus 81 ~ig~vfQ~~~l~p~ltV~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~-----------r~~~~LSGGq~QRVal 149 (359)
T 3fvq_A 81 RLGYLVQEGVLFPHLTVYRNIAYGLGNGKGRTAQERQRIEAMLELTGISELAG-----------RYPHELSGGQQQRAAL 149 (359)
T ss_dssp CCEEECTTCCCCTTSCHHHHHHTTSTTSSCCSHHHHHHHHHHHHHHTCGGGTT-----------SCGGGSCHHHHHHHHH
T ss_pred CEEEEeCCCcCCCCCCHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCchHhc-----------CChhhCCHHHHHHHHH
Confidence 899999999996 5999999997531 1345566777777765443 3456899999999999
Q ss_pred HHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHH
Q psy1503 225 ARAVYKNADIYLLDDPLSAVDMHVGKHLFEDCI 257 (265)
Q Consensus 225 ARal~~~~~illLDEp~s~LD~~~~~~i~~~~i 257 (265)
||||+.+|+++|||||||+||+..+.++++...
T Consensus 150 ArAL~~~P~lLLLDEPts~LD~~~r~~l~~~l~ 182 (359)
T 3fvq_A 150 ARALAPDPELILLDEPFSALDEQLRRQIREDMI 182 (359)
T ss_dssp HHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHH
T ss_pred HHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHH
Confidence 999999999999999999999999999876443
No 22
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=100.00 E-value=2.6e-42 Score=307.97 Aligned_cols=160 Identities=21% Similarity=0.376 Sum_probs=134.2
Q ss_pred CcEEEEeEEEEeCCCCCCcceeeceEEEcCCcEEEEEcCCCChHHHHHHHHhcCcCCCccEEEEcCe-------------
Q psy1503 87 GHVSLDNVTAQWSLQNADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSLGGT------------- 153 (265)
Q Consensus 87 ~~i~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g~------------- 153 (265)
..|+++|++|+|+. ..++|+||||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.
T Consensus 6 ~~l~i~~ls~~y~~--~~~~L~~isl~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~ 83 (275)
T 3gfo_A 6 YILKVEELNYNYSD--GTHALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRILFDNKPIDYSRKGIMKLR 83 (275)
T ss_dssp EEEEEEEEEEECTT--SCEEEEEEEEEEETTSEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCCSHHHHHHHH
T ss_pred cEEEEEEEEEEECC--CCeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeEEEECCEECCcccccHHHHh
Confidence 36999999999964 245999999999999999999999999999999999999999999999983
Q ss_pred --EEEEecCC--CCccccHHHHHhcCCc---cc----HHHHHHHHHHhcchhHHhcCCCCCccccCCCCCCCCHHHHHHH
Q psy1503 154 --VSYASQEP--WIFAATIRQNILFGLP---YL----RRRYADVIRVCALQDDFDSLPNGDFTVVGERGASLSGGQKARI 222 (265)
Q Consensus 154 --i~~v~Q~~--~l~~~ti~eni~~~~~---~~----~~~~~~~~~~~~l~~~i~~l~~g~~t~vg~~g~~LSgGqrqRi 222 (265)
|||++|+| .+|+.|++||+.++.. .. .++..++++.+++.+.. .....+||||||||+
T Consensus 84 ~~ig~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~-----------~~~~~~LSgGqkQRv 152 (275)
T 3gfo_A 84 ESIGIVFQDPDNQLFSASVYQDVSFGAVNMKLPEDEIRKRVDNALKRTGIEHLK-----------DKPTHCLSFGQKKRV 152 (275)
T ss_dssp HSEEEECSSGGGTCCSSBHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCGGGT-----------TSBGGGSCHHHHHHH
T ss_pred CcEEEEEcCcccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhh-----------cCCcccCCHHHHHHH
Confidence 99999997 4678899999987532 11 23445556666654332 345679999999999
Q ss_pred HHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHH
Q psy1503 223 NLARAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGC 260 (265)
Q Consensus 223 alARal~~~~~illLDEp~s~LD~~~~~~i~~~~i~~~ 260 (265)
+|||||+.+|+++|||||||+||+.++..+++ .+..+
T Consensus 153 ~iAraL~~~P~lLlLDEPts~LD~~~~~~i~~-~l~~l 189 (275)
T 3gfo_A 153 AIAGVLVMEPKVLILDEPTAGLDPMGVSEIMK-LLVEM 189 (275)
T ss_dssp HHHHHHTTCCSEEEEECTTTTCCHHHHHHHHH-HHHHH
T ss_pred HHHHHHHcCCCEEEEECccccCCHHHHHHHHH-HHHHH
Confidence 99999999999999999999999999999866 44444
No 23
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=100.00 E-value=3.2e-42 Score=317.67 Aligned_cols=163 Identities=29% Similarity=0.422 Sum_probs=137.1
Q ss_pred CCcEEEEeEEEEeCCCC-CCcceeeceEEEcCCcEEEEEcCCCChHHHHHHHHhcCcCCCccEEEEcCe-----------
Q psy1503 86 KGHVSLDNVTAQWSLQN-ADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSLGGT----------- 153 (265)
Q Consensus 86 ~~~i~~~~~~~~~~~~~-~~~~l~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g~----------- 153 (265)
..+|+++|++++|+... ...+|+||||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.
T Consensus 22 ~~mi~v~~ls~~y~~~~~~~~aL~~vsl~i~~Gei~~IiGpnGaGKSTLlr~i~GL~~p~~G~I~i~G~~i~~~~~~~~~ 101 (366)
T 3tui_C 22 KHMIKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELT 101 (366)
T ss_dssp -CCEEEEEEEEEEECSSSEEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECSSCCHHHHH
T ss_pred CceEEEEeEEEEeCCCCCCeEEEEeeEEEEcCCCEEEEEcCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHH
Confidence 45799999999996421 245899999999999999999999999999999999999999999999983
Q ss_pred -----EEEEecCCCCccc-cHHHHHhcCCc---c----cHHHHHHHHHHhcchhHHhcCCCCCccccCCCCCCCCHHHHH
Q psy1503 154 -----VSYASQEPWIFAA-TIRQNILFGLP---Y----LRRRYADVIRVCALQDDFDSLPNGDFTVVGERGASLSGGQKA 220 (265)
Q Consensus 154 -----i~~v~Q~~~l~~~-ti~eni~~~~~---~----~~~~~~~~~~~~~l~~~i~~l~~g~~t~vg~~g~~LSgGqrq 220 (265)
|||+||++.+|+. ||+||+.++.. . ..++..++++.+++.+..+ ....+|||||||
T Consensus 102 ~~r~~Ig~v~Q~~~l~~~~TV~env~~~~~~~~~~~~~~~~~v~~lL~~vgL~~~~~-----------~~~~~LSGGqkQ 170 (366)
T 3tui_C 102 KARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKHD-----------SYPSNLSGGQKQ 170 (366)
T ss_dssp HHHTTEEEECSSCCCCTTSCHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGTT-----------CCTTTSCHHHHH
T ss_pred HHhCcEEEEeCCCccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhc-----------CChhhCCHHHHH
Confidence 9999999999864 99999987532 1 1234566677777755433 345689999999
Q ss_pred HHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHH
Q psy1503 221 RINLARAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGC 260 (265)
Q Consensus 221 RialARal~~~~~illLDEp~s~LD~~~~~~i~~~~i~~~ 260 (265)
||+|||||+.+|+++|||||||+||+.+...|++ .+..+
T Consensus 171 RVaIArAL~~~P~lLLlDEPTs~LD~~~~~~i~~-lL~~l 209 (366)
T 3tui_C 171 RVAIARALASNPKVLLCDQATSALDPATTRSILE-LLKDI 209 (366)
T ss_dssp HHHHHHHTTTCCSEEEEESTTTTSCHHHHHHHHH-HHHHH
T ss_pred HHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHH-HHHHH
Confidence 9999999999999999999999999999999876 44444
No 24
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=100.00 E-value=3.7e-42 Score=298.31 Aligned_cols=158 Identities=23% Similarity=0.334 Sum_probs=131.7
Q ss_pred cEEEEeEEEEeCCCCCCcceeeceEEEcCCcEEEEEcCCCChHHHHHHHHhcCcCCCccEEEEcCe--------------
Q psy1503 88 HVSLDNVTAQWSLQNADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSLGGT-------------- 153 (265)
Q Consensus 88 ~i~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g~-------------- 153 (265)
+|+++|++++|+. .++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.
T Consensus 4 ~l~~~~l~~~y~~---~~~l~~vsl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~ 80 (224)
T 2pcj_A 4 ILRAENIKKVIRG---YEILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTEGKVFLEGKEVDYTNEKELSLLR 80 (224)
T ss_dssp EEEEEEEEEEETT---EEEEEEEEEEEETTCEEEEEECTTSCHHHHHHHHTTSSCCSEEEEEETTEECCSSCHHHHHHHH
T ss_pred EEEEEeEEEEECC---EeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHHHH
Confidence 6899999999953 56999999999999999999999999999999999999999999999871
Q ss_pred ---EEEEecCCCCcc-ccHHHHHhcCCcc---c----HHHHHHHHHHhcchhHHhcCCCCCccccCCCCCCCCHHHHHHH
Q psy1503 154 ---VSYASQEPWIFA-ATIRQNILFGLPY---L----RRRYADVIRVCALQDDFDSLPNGDFTVVGERGASLSGGQKARI 222 (265)
Q Consensus 154 ---i~~v~Q~~~l~~-~ti~eni~~~~~~---~----~~~~~~~~~~~~l~~~i~~l~~g~~t~vg~~g~~LSgGqrqRi 222 (265)
++|++|++.+|+ .|++||+.++... . .+++.++++.+++.+. ......+||||||||+
T Consensus 81 ~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LSgGq~qrv 149 (224)
T 2pcj_A 81 NRKLGFVFQFHYLIPELTALENVIVPMLKMGKPKKEAKERGEYLLSELGLGDK-----------LSRKPYELSGGEQQRV 149 (224)
T ss_dssp HHHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTC-----------TTCCGGGSCHHHHHHH
T ss_pred hCcEEEEecCcccCCCCCHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCchh-----------hhCChhhCCHHHHHHH
Confidence 899999999886 5999999875311 1 2233444454444322 3345679999999999
Q ss_pred HHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHH
Q psy1503 223 NLARAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGC 260 (265)
Q Consensus 223 alARal~~~~~illLDEp~s~LD~~~~~~i~~~~i~~~ 260 (265)
+|||||+.+|+++||||||++||+.++..+++ .+..+
T Consensus 150 ~laral~~~p~lllLDEPt~~LD~~~~~~~~~-~l~~l 186 (224)
T 2pcj_A 150 AIARALANEPILLFADEPTGNLDSANTKRVMD-IFLKI 186 (224)
T ss_dssp HHHHHTTTCCSEEEEESTTTTCCHHHHHHHHH-HHHHH
T ss_pred HHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHH-HHHHH
Confidence 99999999999999999999999999998865 44444
No 25
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=100.00 E-value=8.9e-42 Score=298.76 Aligned_cols=159 Identities=21% Similarity=0.398 Sum_probs=131.8
Q ss_pred CcEEEEeEEEEeCCCCCCcceeeceEEEcCCcEEEEEcCCCChHHHHHHHHhcCcCCCccEEEEcCe-------------
Q psy1503 87 GHVSLDNVTAQWSLQNADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSLGGT------------- 153 (265)
Q Consensus 87 ~~i~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g~------------- 153 (265)
.+++++|++++|+. .++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.
T Consensus 5 ~~l~~~~l~~~y~~---~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~ 81 (240)
T 1ji0_A 5 IVLEVQSLHVYYGA---IHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRM 81 (240)
T ss_dssp EEEEEEEEEEEETT---EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHT
T ss_pred ceEEEEeEEEEECC---eeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCCHHHHHhC
Confidence 36999999999953 46999999999999999999999999999999999999999999999882
Q ss_pred -EEEEecCCCCccc-cHHHHHhcCC-c-ccH----HHHHHHHHHhc-chhHHhcCCCCCccccCCCCCCCCHHHHHHHHH
Q psy1503 154 -VSYASQEPWIFAA-TIRQNILFGL-P-YLR----RRYADVIRVCA-LQDDFDSLPNGDFTVVGERGASLSGGQKARINL 224 (265)
Q Consensus 154 -i~~v~Q~~~l~~~-ti~eni~~~~-~-~~~----~~~~~~~~~~~-l~~~i~~l~~g~~t~vg~~g~~LSgGqrqRial 224 (265)
++|++|++.+|+. |++||+.++. . ... ++..++++..+ +. ...+.++.+||||||||++|
T Consensus 82 ~i~~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~l~~~~~l~-----------~~~~~~~~~LSgGq~qrv~l 150 (240)
T 1ji0_A 82 GIALVPEGRRIFPELTVYENLMMGAYNRKDKEGIKRDLEWIFSLFPRLK-----------ERLKQLGGTLSGGEQQMLAI 150 (240)
T ss_dssp TEEEECSSCCCCTTSBHHHHHHGGGTTCCCSSHHHHHHHHHHHHCHHHH-----------TTTTSBSSSSCHHHHHHHHH
T ss_pred CEEEEecCCccCCCCcHHHHHHHhhhcCCCHHHHHHHHHHHHHHcccHh-----------hHhcCChhhCCHHHHHHHHH
Confidence 9999999999976 9999999863 1 111 22233333331 32 22445678999999999999
Q ss_pred HHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHH
Q psy1503 225 ARAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGC 260 (265)
Q Consensus 225 ARal~~~~~illLDEp~s~LD~~~~~~i~~~~i~~~ 260 (265)
||||+.+|+++||||||++||+.+++.+++ .+..+
T Consensus 151 AraL~~~p~lllLDEPts~LD~~~~~~l~~-~l~~~ 185 (240)
T 1ji0_A 151 GRALMSRPKLLMMDEPSLGLAPILVSEVFE-VIQKI 185 (240)
T ss_dssp HHHHTTCCSEEEEECTTTTCCHHHHHHHHH-HHHHH
T ss_pred HHHHHcCCCEEEEcCCcccCCHHHHHHHHH-HHHHH
Confidence 999999999999999999999999999866 44444
No 26
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=100.00 E-value=6e-42 Score=317.55 Aligned_cols=159 Identities=28% Similarity=0.489 Sum_probs=135.6
Q ss_pred cEEEEeEEEEeCCCCCCcceeeceEEEcCCcEEEEEcCCCChHHHHHHHHhcCcCCCccEEEEcCe-----------EEE
Q psy1503 88 HVSLDNVTAQWSLQNADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSLGGT-----------VSY 156 (265)
Q Consensus 88 ~i~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g~-----------i~~ 156 (265)
.|+++|++++|+ ...+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|. |||
T Consensus 3 ~l~~~~l~~~yg---~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~~~~~~~~~r~ig~ 79 (381)
T 3rlf_A 3 SVQLQNVTKAWG---EVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPAERGVGM 79 (381)
T ss_dssp CEEEEEEEEEET---TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCGGGSCEEE
T ss_pred EEEEEeEEEEEC---CEEEEeeeEEEECCCCEEEEEcCCCchHHHHHHHHHcCCCCCCeEEEECCEECCCCCHHHCCEEE
Confidence 489999999996 356999999999999999999999999999999999999999999999984 999
Q ss_pred EecCCCCcc-ccHHHHHhcCCc---cc----HHHHHHHHHHhcchhHHhcCCCCCccccCCCCCCCCHHHHHHHHHHHHH
Q psy1503 157 ASQEPWIFA-ATIRQNILFGLP---YL----RRRYADVIRVCALQDDFDSLPNGDFTVVGERGASLSGGQKARINLARAV 228 (265)
Q Consensus 157 v~Q~~~l~~-~ti~eni~~~~~---~~----~~~~~~~~~~~~l~~~i~~l~~g~~t~vg~~g~~LSgGqrqRialARal 228 (265)
|+|++.+|+ .||+|||.|+.. .. .++..++++.+++.+..+ ....+|||||||||+|||||
T Consensus 80 VfQ~~~l~p~ltV~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~-----------r~p~~LSGGqrQRVaiArAL 148 (381)
T 3rlf_A 80 VFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLD-----------RKPKALSGGQRQRVAIGRTL 148 (381)
T ss_dssp ECTTCCCCTTSCHHHHHTHHHHHTTCCHHHHHHHHHHHHHHTTCGGGTT-----------CCGGGSCHHHHHHHHHHHHH
T ss_pred EecCCcCCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhc-----------CChhHCCHHHHHHHHHHHHH
Confidence 999999997 599999998632 11 234556666666654433 44579999999999999999
Q ss_pred ccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHHh
Q psy1503 229 YKNADIYLLDDPLSAVDMHVGKHLFEDCISGCL 261 (265)
Q Consensus 229 ~~~~~illLDEp~s~LD~~~~~~i~~~~i~~~l 261 (265)
+.+|+++|||||||+||+..+.++++. +..+.
T Consensus 149 ~~~P~lLLLDEPts~LD~~~~~~l~~~-l~~l~ 180 (381)
T 3rlf_A 149 VAEPSVFLLDEPLSNLDAALRVQMRIE-ISRLH 180 (381)
T ss_dssp HHCCSEEEEESTTTTSCHHHHHHHHHH-HHHHH
T ss_pred HcCCCEEEEECCCcCCCHHHHHHHHHH-HHHHH
Confidence 999999999999999999999998664 44443
No 27
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=100.00 E-value=1.3e-41 Score=301.62 Aligned_cols=158 Identities=22% Similarity=0.371 Sum_probs=133.0
Q ss_pred cEEEEeEEEEeCCCCCCcceeeceEEEcCCcEEEEEcCCCChHHHHHHHHhcCcCCCccEEEEcCe--------------
Q psy1503 88 HVSLDNVTAQWSLQNADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSLGGT-------------- 153 (265)
Q Consensus 88 ~i~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g~-------------- 153 (265)
+|+++|++++|+. .++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.
T Consensus 24 ~l~i~~l~~~y~~---~~vL~~vsl~i~~Gei~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~ 100 (263)
T 2olj_A 24 MIDVHQLKKSFGS---LEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLNKVRE 100 (263)
T ss_dssp SEEEEEEEEEETT---EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEESSSTTCCHHHHHH
T ss_pred eEEEEeEEEEECC---EEEEEeeEEEEcCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCEECCCccccHHHHhC
Confidence 6999999999952 46999999999999999999999999999999999999999999999872
Q ss_pred -EEEEecCCCCccc-cHHHHHhcCC----ccc----HHHHHHHHHHhcchhHHhcCCCCCccccCCCCCCCCHHHHHHHH
Q psy1503 154 -VSYASQEPWIFAA-TIRQNILFGL----PYL----RRRYADVIRVCALQDDFDSLPNGDFTVVGERGASLSGGQKARIN 223 (265)
Q Consensus 154 -i~~v~Q~~~l~~~-ti~eni~~~~----~~~----~~~~~~~~~~~~l~~~i~~l~~g~~t~vg~~g~~LSgGqrqRia 223 (265)
++|++|++.+|+. |++||+.++. ... .+++.++++.+++.+. ......+||||||||++
T Consensus 101 ~i~~v~Q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~-----------~~~~~~~LSgGqkQRv~ 169 (263)
T 2olj_A 101 EVGMVFQRFNLFPHMTVLNNITLAPMKVRKWPREKAEAKAMELLDKVGLKDK-----------AHAYPDSLSGGQAQRVA 169 (263)
T ss_dssp HEEEECSSCCCCTTSCHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCGGG-----------TTSCGGGSCHHHHHHHH
T ss_pred cEEEEeCCCcCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchH-----------hcCChhhCCHHHHHHHH
Confidence 8999999998875 9999998742 111 2234455555555433 23456799999999999
Q ss_pred HHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHH
Q psy1503 224 LARAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGC 260 (265)
Q Consensus 224 lARal~~~~~illLDEp~s~LD~~~~~~i~~~~i~~~ 260 (265)
|||||+.+|+++||||||++||+.+++.+++ .+..+
T Consensus 170 lAraL~~~p~lllLDEPts~LD~~~~~~~~~-~l~~l 205 (263)
T 2olj_A 170 IARALAMEPKIMLFDEPTSALDPEMVGEVLS-VMKQL 205 (263)
T ss_dssp HHHHHTTCCSEEEEESTTTTSCHHHHHHHHH-HHHHH
T ss_pred HHHHHHCCCCEEEEeCCcccCCHHHHHHHHH-HHHHH
Confidence 9999999999999999999999999998866 44444
No 28
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=100.00 E-value=1.3e-41 Score=300.64 Aligned_cols=158 Identities=22% Similarity=0.395 Sum_probs=131.8
Q ss_pred cEEEEeEEEEeCCCCCCcceeeceEEEcCCcEEEEEcCCCChHHHHHHHHhcCcCCCccEEEEcCe--------------
Q psy1503 88 HVSLDNVTAQWSLQNADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSLGGT-------------- 153 (265)
Q Consensus 88 ~i~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g~-------------- 153 (265)
+|+++|++++|++ .++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.
T Consensus 7 ~l~i~~l~~~y~~---~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~ 83 (257)
T 1g6h_A 7 ILRTENIVKYFGE---FKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHYG 83 (257)
T ss_dssp EEEEEEEEEEETT---EEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHT
T ss_pred EEEEeeeEEEECC---EeeEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhCC
Confidence 6999999999953 46999999999999999999999999999999999999999999999872
Q ss_pred EEEEecCCCCcc-ccHHHHHhcCCcc----------------c----HHHHHHHHHHhcchhHHhcCCCCCccccCCCCC
Q psy1503 154 VSYASQEPWIFA-ATIRQNILFGLPY----------------L----RRRYADVIRVCALQDDFDSLPNGDFTVVGERGA 212 (265)
Q Consensus 154 i~~v~Q~~~l~~-~ti~eni~~~~~~----------------~----~~~~~~~~~~~~l~~~i~~l~~g~~t~vg~~g~ 212 (265)
++|++|++.+|+ .|++||+.++... . .++..++++.+++. ........
T Consensus 84 i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-----------~~~~~~~~ 152 (257)
T 1g6h_A 84 IVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLS-----------HLYDRKAG 152 (257)
T ss_dssp EEECCCCCGGGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCG-----------GGTTSBGG
T ss_pred EEEEccCCccCCCCcHHHHHHHHHhhhccCcccccccccccCCHHHHHHHHHHHHHHcCCc-----------hhhCCCch
Confidence 899999999886 5999999885321 1 11223333433332 33455678
Q ss_pred CCCHHHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHH
Q psy1503 213 SLSGGQKARINLARAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGC 260 (265)
Q Consensus 213 ~LSgGqrqRialARal~~~~~illLDEp~s~LD~~~~~~i~~~~i~~~ 260 (265)
+||||||||++|||||+.+|+++|||||||+||+.+.+.+++ .+..+
T Consensus 153 ~LSgGqkQrv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~-~l~~l 199 (257)
T 1g6h_A 153 ELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFN-HVLEL 199 (257)
T ss_dssp GSCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHH-HHHHH
T ss_pred hCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHH-HHHHH
Confidence 999999999999999999999999999999999999999866 44444
No 29
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=100.00 E-value=2e-41 Score=300.30 Aligned_cols=158 Identities=22% Similarity=0.353 Sum_probs=133.1
Q ss_pred cEEEEeEEEEeCCCCCCcceeeceEEEcCCcEEEEEcCCCChHHHHHHHHhcCcCCCccEEEEcC---------------
Q psy1503 88 HVSLDNVTAQWSLQNADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSLGG--------------- 152 (265)
Q Consensus 88 ~i~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g--------------- 152 (265)
+|+++|++++|+. .++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|
T Consensus 6 ~l~i~~l~~~y~~---~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~ 82 (262)
T 1b0u_A 6 KLHVIDLHKRYGG---HEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQLKV 82 (262)
T ss_dssp CEEEEEEEEEETT---EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCEEECTTSSEEE
T ss_pred eEEEeeEEEEECC---EEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEccccccccccccc
Confidence 6999999999953 4699999999999999999999999999999999999999999999986
Q ss_pred -----------eEEEEecCCCCccc-cHHHHHhcCC----ccc----HHHHHHHHHHhcchhH-HhcCCCCCccccCCCC
Q psy1503 153 -----------TVSYASQEPWIFAA-TIRQNILFGL----PYL----RRRYADVIRVCALQDD-FDSLPNGDFTVVGERG 211 (265)
Q Consensus 153 -----------~i~~v~Q~~~l~~~-ti~eni~~~~----~~~----~~~~~~~~~~~~l~~~-i~~l~~g~~t~vg~~g 211 (265)
.++|++|++.+|+. |++||+.++. ... .++..++++.+++.+. .. ...
T Consensus 83 ~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~-----------~~~ 151 (262)
T 1b0u_A 83 ADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGIDERAQG-----------KYP 151 (262)
T ss_dssp SCHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCCHHHHT-----------SCG
T ss_pred cChhhHHHHhcceEEEecCcccCCCCcHHHHHHhhHHHhcCCCHHHHHHHHHHHHHHcCCCchhhc-----------CCc
Confidence 18999999998875 9999998742 111 2334555666666544 33 345
Q ss_pred CCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHH
Q psy1503 212 ASLSGGQKARINLARAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGC 260 (265)
Q Consensus 212 ~~LSgGqrqRialARal~~~~~illLDEp~s~LD~~~~~~i~~~~i~~~ 260 (265)
.+||||||||++|||||+.+|+++|||||||+||+.++..+++ .+..+
T Consensus 152 ~~LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~~~~-~l~~l 199 (262)
T 1b0u_A 152 VHLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLR-IMQQL 199 (262)
T ss_dssp GGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHH-HHHHH
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHH-HHHHH
Confidence 7899999999999999999999999999999999999999876 44444
No 30
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=100.00 E-value=9.9e-42 Score=293.91 Aligned_cols=153 Identities=20% Similarity=0.363 Sum_probs=130.8
Q ss_pred CcEEEEeEEEEeCCCCCCcceeeceEEEcCCcEEEEEcCCCChHHHHHHHHhcCcCCCccEEEEcCe--------EEEEe
Q psy1503 87 GHVSLDNVTAQWSLQNADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSLGGT--------VSYAS 158 (265)
Q Consensus 87 ~~i~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g~--------i~~v~ 158 (265)
..|+++|++++|+ . ++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|. ++|++
T Consensus 9 ~~l~~~~ls~~y~---~-~il~~vsl~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~i~~v~ 84 (214)
T 1sgw_A 9 SKLEIRDLSVGYD---K-PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPITKVKGKIFFLP 84 (214)
T ss_dssp CEEEEEEEEEESS---S-EEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGGGGGEEEEC
T ss_pred ceEEEEEEEEEeC---C-eEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEhhhhcCcEEEEe
Confidence 4799999999995 3 6999999999999999999999999999999999999999999999983 89999
Q ss_pred cCCCCccc-cHHHHHhcCCc-----ccHHHHHHHHHHhcchhHHhcCCCCCccccCCCCCCCCHHHHHHHHHHHHHccCC
Q psy1503 159 QEPWIFAA-TIRQNILFGLP-----YLRRRYADVIRVCALQDDFDSLPNGDFTVVGERGASLSGGQKARINLARAVYKNA 232 (265)
Q Consensus 159 Q~~~l~~~-ti~eni~~~~~-----~~~~~~~~~~~~~~l~~~i~~l~~g~~t~vg~~g~~LSgGqrqRialARal~~~~ 232 (265)
|++.+|+. |++||+.++.. ...+++.++++.+++. .. ..++.+||||||||++|||||+.+|
T Consensus 85 q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~gl~-----------~~-~~~~~~LSgGqkqrv~laraL~~~p 152 (214)
T 1sgw_A 85 EEIIVPRKISVEDYLKAVASLYGVKVNKNEIMDALESVEVL-----------DL-KKKLGELSQGTIRRVQLASTLLVNA 152 (214)
T ss_dssp SSCCCCTTSBHHHHHHHHHHHTTCCCCHHHHHHHHHHTTCC-----------CT-TSBGGGSCHHHHHHHHHHHHTTSCC
T ss_pred CCCcCCCCCCHHHHHHHHHHhcCCchHHHHHHHHHHHcCCC-----------cC-CCChhhCCHHHHHHHHHHHHHHhCC
Confidence 99999875 99999987521 1233444454444332 23 4567899999999999999999999
Q ss_pred CEEEEeCCCCCcCHHHHHHHHHH
Q psy1503 233 DIYLLDDPLSAVDMHVGKHLFED 255 (265)
Q Consensus 233 ~illLDEp~s~LD~~~~~~i~~~ 255 (265)
+++||||||++||+.+...+++.
T Consensus 153 ~lllLDEPts~LD~~~~~~l~~~ 175 (214)
T 1sgw_A 153 EIYVLDDPVVAIDEDSKHKVLKS 175 (214)
T ss_dssp SEEEEESTTTTSCTTTHHHHHHH
T ss_pred CEEEEECCCcCCCHHHHHHHHHH
Confidence 99999999999999999988653
No 31
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=100.00 E-value=3.2e-41 Score=298.05 Aligned_cols=159 Identities=23% Similarity=0.344 Sum_probs=134.3
Q ss_pred CcEEEEeEEEEeCCCCCCcceeeceEEEcCCcEEEEEcCCCChHHHHHHHHhcCcCCCccEEEEcCe------------E
Q psy1503 87 GHVSLDNVTAQWSLQNADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSLGGT------------V 154 (265)
Q Consensus 87 ~~i~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g~------------i 154 (265)
+.|+++|++++|+ ..++|+++||+|++|++++|+||||||||||+++|+|+++|++|+|.++|. +
T Consensus 14 ~~l~i~~l~~~y~---~~~vl~~vsl~i~~Gei~~l~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~i 90 (256)
T 1vpl_A 14 GAVVVKDLRKRIG---KKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVEEPHEVRKLI 90 (256)
T ss_dssp CCEEEEEEEEEET---TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTCHHHHHTTE
T ss_pred CeEEEEEEEEEEC---CEEEEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCccHHHHhhcE
Confidence 4799999999995 256999999999999999999999999999999999999999999999883 9
Q ss_pred EEEecCCCCccc-cHHHHHhcCCc---cc----HHHHHHHHHHhcchhHHhcCCCCCccccCCCCCCCCHHHHHHHHHHH
Q psy1503 155 SYASQEPWIFAA-TIRQNILFGLP---YL----RRRYADVIRVCALQDDFDSLPNGDFTVVGERGASLSGGQKARINLAR 226 (265)
Q Consensus 155 ~~v~Q~~~l~~~-ti~eni~~~~~---~~----~~~~~~~~~~~~l~~~i~~l~~g~~t~vg~~g~~LSgGqrqRialAR 226 (265)
+|++|++.+++. |++||+.++.. .. .+++.++++.+++.+..+ .+..+||||||||++|||
T Consensus 91 ~~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~-----------~~~~~LSgGq~qRv~lAr 159 (256)
T 1vpl_A 91 SYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERATEIAGLGEKIK-----------DRVSTYSKGMVRKLLIAR 159 (256)
T ss_dssp EEECTTCCCCTTSBHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCGGGGG-----------SBGGGCCHHHHHHHHHHH
T ss_pred EEEcCCCCCCCCCcHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCchHhc-----------CChhhCCHHHHHHHHHHH
Confidence 999999998875 99999987421 11 134455666666654332 345789999999999999
Q ss_pred HHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHH
Q psy1503 227 AVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGC 260 (265)
Q Consensus 227 al~~~~~illLDEp~s~LD~~~~~~i~~~~i~~~ 260 (265)
||+.+|+++||||||++||+.+...+++ .+..+
T Consensus 160 aL~~~p~lllLDEPts~LD~~~~~~l~~-~l~~l 192 (256)
T 1vpl_A 160 ALMVNPRLAILDEPTSGLDVLNAREVRK-ILKQA 192 (256)
T ss_dssp HHTTCCSEEEEESTTTTCCHHHHHHHHH-HHHHH
T ss_pred HHHcCCCEEEEeCCccccCHHHHHHHHH-HHHHH
Confidence 9999999999999999999999999866 44444
No 32
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=100.00 E-value=3.6e-41 Score=297.22 Aligned_cols=160 Identities=21% Similarity=0.313 Sum_probs=134.2
Q ss_pred cEEEEeEEEEeCCCCCCcceeeceEEEcCCcEEEEEcCCCChHHHHHHHHhcCcCCCccEEEEcCeEEEEecCCCCc-cc
Q psy1503 88 HVSLDNVTAQWSLQNADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSLGGTVSYASQEPWIF-AA 166 (265)
Q Consensus 88 ~i~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g~i~~v~Q~~~l~-~~ 166 (265)
+|+++|++++|+. ..++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.+...++|++|++.++ ..
T Consensus 4 ~l~i~~l~~~y~~--~~~vl~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~~~i~~v~q~~~~~~~~ 81 (253)
T 2nq2_C 4 ALSVENLGFYYQA--ENFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKIEVYQSIGFVPQFFSSPFAY 81 (253)
T ss_dssp EEEEEEEEEEETT--TTEEEEEEEEEEETTCEEEEECCSSSSHHHHHHHHTTSSCCSEEEEEECSCEEEECSCCCCSSCC
T ss_pred eEEEeeEEEEeCC--CCeEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEEeccEEEEcCCCccCCCC
Confidence 5899999999962 24699999999999999999999999999999999999999999999877899999999888 56
Q ss_pred cHHHHHhcCCc-c-------c---HHHHHHHHHHhcchhHHhcCCCCCccccCCCCCCCCHHHHHHHHHHHHHccCCCEE
Q psy1503 167 TIRQNILFGLP-Y-------L---RRRYADVIRVCALQDDFDSLPNGDFTVVGERGASLSGGQKARINLARAVYKNADIY 235 (265)
Q Consensus 167 ti~eni~~~~~-~-------~---~~~~~~~~~~~~l~~~i~~l~~g~~t~vg~~g~~LSgGqrqRialARal~~~~~il 235 (265)
|++||+.++.. . . .+++.++++.+++.+. ...+..+||||||||++|||||+.+|+++
T Consensus 82 tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LSgGq~qrv~lAraL~~~p~ll 150 (253)
T 2nq2_C 82 SVLDIVLMGRSTHINTFAKPKSHDYQVAMQALDYLNLTHL-----------AKREFTSLSGGQRQLILIARAIASECKLI 150 (253)
T ss_dssp BHHHHHHGGGGGGSCTTCCCCHHHHHHHHHHHHHTTCGGG-----------TTSBGGGSCHHHHHHHHHHHHHHTTCSEE
T ss_pred CHHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHcCChHH-----------hcCChhhCCHHHHHHHHHHHHHHcCCCEE
Confidence 99999998631 0 1 2334555555555433 23456799999999999999999999999
Q ss_pred EEeCCCCCcCHHHHHHHHHHHHHHHh
Q psy1503 236 LLDDPLSAVDMHVGKHLFEDCISGCL 261 (265)
Q Consensus 236 lLDEp~s~LD~~~~~~i~~~~i~~~l 261 (265)
|||||||+||+.+++.+++ .+..+.
T Consensus 151 lLDEPts~LD~~~~~~l~~-~l~~l~ 175 (253)
T 2nq2_C 151 LLDEPTSALDLANQDIVLS-LLIDLA 175 (253)
T ss_dssp EESSSSTTSCHHHHHHHHH-HHHHHH
T ss_pred EEeCCcccCCHHHHHHHHH-HHHHHH
Confidence 9999999999999999866 444443
No 33
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=100.00 E-value=3.5e-41 Score=310.73 Aligned_cols=158 Identities=25% Similarity=0.420 Sum_probs=135.3
Q ss_pred cEEEEeEEEEeCCCCCCcceeeceEEEcCCcEEEEEcCCCChHHHHHHHHhcCcCCCccEEEEcCe-----------EEE
Q psy1503 88 HVSLDNVTAQWSLQNADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSLGGT-----------VSY 156 (265)
Q Consensus 88 ~i~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g~-----------i~~ 156 (265)
.|+++|++++|+. ..+|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|. +||
T Consensus 3 ~l~~~~l~~~y~~---~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~ 79 (359)
T 2yyz_A 3 SIRVVNLKKYFGK---VKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGEIYFDDVLVNDIPPKYREVGM 79 (359)
T ss_dssp CEEEEEEEEEETT---EEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGTTEEE
T ss_pred EEEEEEEEEEECC---EEEEeeeEEEEcCCCEEEEEcCCCchHHHHHHHHHCCCCCCccEEEECCEECCCCChhhCcEEE
Confidence 4899999999952 46899999999999999999999999999999999999999999999983 999
Q ss_pred EecCCCCcc-ccHHHHHhcCCcc---c----HHHHHHHHHHhcchhHHhcCCCCCccccCCCCCCCCHHHHHHHHHHHHH
Q psy1503 157 ASQEPWIFA-ATIRQNILFGLPY---L----RRRYADVIRVCALQDDFDSLPNGDFTVVGERGASLSGGQKARINLARAV 228 (265)
Q Consensus 157 v~Q~~~l~~-~ti~eni~~~~~~---~----~~~~~~~~~~~~l~~~i~~l~~g~~t~vg~~g~~LSgGqrqRialARal 228 (265)
|+|++.+|+ .|++|||.|+... . .+++.++++.+++.+..++ ...+||||||||++|||||
T Consensus 80 v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r-----------~~~~LSgGq~QRvalArAL 148 (359)
T 2yyz_A 80 VFQNYALYPHMTVFENIAFPLRARRISKDEVEKRVVEIARKLLIDNLLDR-----------KPTQLSGGQQQRVALARAL 148 (359)
T ss_dssp ECSSCCCCTTSCHHHHHHGGGSSSCSHHHHTTHHHHHHHHHTTCGGGTTS-----------CGGGSCHHHHHHHHHHHHH
T ss_pred EecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhcC-----------ChhhCCHHHHHHHHHHHHH
Confidence 999999997 5999999987431 1 2345666777766554433 4468999999999999999
Q ss_pred ccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHH
Q psy1503 229 YKNADIYLLDDPLSAVDMHVGKHLFEDCISGC 260 (265)
Q Consensus 229 ~~~~~illLDEp~s~LD~~~~~~i~~~~i~~~ 260 (265)
+.+|+++|||||||+||+..+..+.+. +..+
T Consensus 149 ~~~P~lLLLDEP~s~LD~~~r~~l~~~-l~~l 179 (359)
T 2yyz_A 149 VKQPKVLLFDEPLSNLDANLRMIMRAE-IKHL 179 (359)
T ss_dssp TTCCSEEEEESTTTTSCHHHHHHHHHH-HHHH
T ss_pred HcCCCEEEEECCcccCCHHHHHHHHHH-HHHH
Confidence 999999999999999999999988654 4444
No 34
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=100.00 E-value=2.8e-41 Score=300.00 Aligned_cols=160 Identities=23% Similarity=0.311 Sum_probs=134.8
Q ss_pred CcEEEEeEEEEeCCCCCCcceeeceEEEcCCcEEEEEcCCCChHHHHHHHHhcCcCCCccEEEEcCe-------------
Q psy1503 87 GHVSLDNVTAQWSLQNADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSLGGT------------- 153 (265)
Q Consensus 87 ~~i~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g~------------- 153 (265)
..++++|++++|+ ..++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.
T Consensus 10 ~~l~~~~l~~~~~---~~~vL~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~ 86 (266)
T 4g1u_C 10 ALLEASHLHYHVQ---QQALINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSPSHGECHLLGQNLNSWQPKALART 86 (266)
T ss_dssp CEEEEEEEEEEET---TEEEEEEEEEEEETTCEEEEECCTTSCHHHHHHHHTSSSCCSSCEEEETTEETTTSCHHHHHHH
T ss_pred ceEEEEeEEEEeC---CeeEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCCHHHHhhe
Confidence 4799999999996 357999999999999999999999999999999999999999999999984
Q ss_pred EEEEecCCCCc-cccHHHHHhcCCc-----ccHHHHHHHHHHhcchhHHhcCCCCCccccCCCCCCCCHHHHHHHHHHHH
Q psy1503 154 VSYASQEPWIF-AATIRQNILFGLP-----YLRRRYADVIRVCALQDDFDSLPNGDFTVVGERGASLSGGQKARINLARA 227 (265)
Q Consensus 154 i~~v~Q~~~l~-~~ti~eni~~~~~-----~~~~~~~~~~~~~~l~~~i~~l~~g~~t~vg~~g~~LSgGqrqRialARa 227 (265)
++|++|++.++ +.|++||+.++.. ...++..++++.+++.+. ......+||||||||++||||
T Consensus 87 i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LSgGq~QRv~iAra 155 (266)
T 4g1u_C 87 RAVMRQYSELAFPFSVSEVIQMGRAPYGGSQDRQALQQVMAQTDCLAL-----------AQRDYRVLSGGEQQRVQLARV 155 (266)
T ss_dssp EEEECSCCCCCSCCBHHHHHHGGGTTSCSTTHHHHHHHHHHHTTCSTT-----------TTSBGGGCCHHHHHHHHHHHH
T ss_pred EEEEecCCccCCCCCHHHHHHhhhhhcCcHHHHHHHHHHHHHcCChhH-----------hcCCcccCCHHHHHHHHHHHH
Confidence 99999998875 6799999998642 123445556666655432 223456899999999999999
Q ss_pred Hcc------CCCEEEEeCCCCCcCHHHHHHHHHHHHHHHh
Q psy1503 228 VYK------NADIYLLDDPLSAVDMHVGKHLFEDCISGCL 261 (265)
Q Consensus 228 l~~------~~~illLDEp~s~LD~~~~~~i~~~~i~~~l 261 (265)
|++ +|+++|||||||+||+.++..+++ .+..+.
T Consensus 156 L~~~~~~~~~p~lLllDEPts~LD~~~~~~i~~-~l~~l~ 194 (266)
T 4g1u_C 156 LAQLWQPQPTPRWLFLDEPTSALDLYHQQHTLR-LLRQLT 194 (266)
T ss_dssp HHHTCCSSCCCEEEEECCCCSSCCHHHHHHHHH-HHHHHH
T ss_pred HhcccccCCCCCEEEEeCccccCCHHHHHHHHH-HHHHHH
Confidence 999 999999999999999999999866 444443
No 35
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=100.00 E-value=2.4e-41 Score=311.37 Aligned_cols=161 Identities=26% Similarity=0.438 Sum_probs=135.6
Q ss_pred CCcEEEEeEEEEeCCCCCCcceeeceEEEcCCcEEEEEcCCCChHHHHHHHHhcCcCCCccEEEEcCe-----------E
Q psy1503 86 KGHVSLDNVTAQWSLQNADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSLGGT-----------V 154 (265)
Q Consensus 86 ~~~i~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g~-----------i 154 (265)
...|+++|++++|++ ..++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|. +
T Consensus 12 ~~~l~~~~l~~~y~g--~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~i 89 (355)
T 1z47_A 12 SMTIEFVGVEKIYPG--GARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDVWIGGKRVTDLPPQKRNV 89 (355)
T ss_dssp CEEEEEEEEEECCTT--STTCEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCGGGSSE
T ss_pred CceEEEEEEEEEEcC--CCEEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECCcCChhhCcE
Confidence 357999999999931 246899999999999999999999999999999999999999999999983 9
Q ss_pred EEEecCCCCcc-ccHHHHHhcCCc---cc----HHHHHHHHHHhcchhHHhcCCCCCccccCCCCCCCCHHHHHHHHHHH
Q psy1503 155 SYASQEPWIFA-ATIRQNILFGLP---YL----RRRYADVIRVCALQDDFDSLPNGDFTVVGERGASLSGGQKARINLAR 226 (265)
Q Consensus 155 ~~v~Q~~~l~~-~ti~eni~~~~~---~~----~~~~~~~~~~~~l~~~i~~l~~g~~t~vg~~g~~LSgGqrqRialAR 226 (265)
+||+|++.+|+ .|++|||.|+.. .. .+++.++++.+++.+..+ ....+||||||||++|||
T Consensus 90 g~v~Q~~~l~~~ltv~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~-----------r~~~~LSGGq~QRvalAr 158 (355)
T 1z47_A 90 GLVFQNYALFQHMTVYDNVSFGLREKRVPKDEMDARVRELLRFMRLESYAN-----------RFPHELSGGQQQRVALAR 158 (355)
T ss_dssp EEECGGGCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCGGGTT-----------SCGGGSCHHHHHHHHHHH
T ss_pred EEEecCcccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhc-----------CCcccCCHHHHHHHHHHH
Confidence 99999999997 599999998632 11 234556666666654433 345689999999999999
Q ss_pred HHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHH
Q psy1503 227 AVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGC 260 (265)
Q Consensus 227 al~~~~~illLDEp~s~LD~~~~~~i~~~~i~~~ 260 (265)
||+.+|+++|||||||+||+.++..+.+ .+..+
T Consensus 159 AL~~~P~lLLLDEP~s~LD~~~r~~l~~-~l~~l 191 (355)
T 1z47_A 159 ALAPRPQVLLFDEPFAAIDTQIRRELRT-FVRQV 191 (355)
T ss_dssp HHTTCCSEEEEESTTCCSSHHHHHHHHH-HHHHH
T ss_pred HHHcCCCEEEEeCCcccCCHHHHHHHHH-HHHHH
Confidence 9999999999999999999999999865 34444
No 36
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=100.00 E-value=6.2e-41 Score=297.67 Aligned_cols=161 Identities=24% Similarity=0.372 Sum_probs=134.8
Q ss_pred cEEEEeEEEEeCCCCC--CcceeeceEEEcCCcEEEEEcCCCChHHHHHHHHhcCcCCCccEEEEcCe----------EE
Q psy1503 88 HVSLDNVTAQWSLQNA--DLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSLGGT----------VS 155 (265)
Q Consensus 88 ~i~~~~~~~~~~~~~~--~~~l~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g~----------i~ 155 (265)
+|+++|++++|+.... .++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|. ++
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~i~ 81 (266)
T 2yz2_A 2 RIEVVNVSHIFHRGTPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSGDVLYDGERKKGYEIRRNIG 81 (266)
T ss_dssp CEEEEEEEEEESTTSTTCEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECCHHHHGGGEE
T ss_pred EEEEEEEEEEecCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEECchHHhhhhEE
Confidence 4899999999962111 46899999999999999999999999999999999999999999999983 89
Q ss_pred EEecCC--CCccccHHHHHhcCCcc------cHHHHHHHHHHhcch--hHHhcCCCCCccccCCCCCCCCHHHHHHHHHH
Q psy1503 156 YASQEP--WIFAATIRQNILFGLPY------LRRRYADVIRVCALQ--DDFDSLPNGDFTVVGERGASLSGGQKARINLA 225 (265)
Q Consensus 156 ~v~Q~~--~l~~~ti~eni~~~~~~------~~~~~~~~~~~~~l~--~~i~~l~~g~~t~vg~~g~~LSgGqrqRialA 225 (265)
|++|+| .+++.|++||+.++... ..+++.++++.+++. +..+. ...+||||||||++||
T Consensus 82 ~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----------~~~~LSgGq~qRv~lA 150 (266)
T 2yz2_A 82 IAFQYPEDQFFAERVFDEVAFAVKNFYPDRDPVPLVKKAMEFVGLDFDSFKDR-----------VPFFLSGGEKRRVAIA 150 (266)
T ss_dssp EECSSGGGGCCCSSHHHHHHHTTTTTCTTSCSHHHHHHHHHHTTCCHHHHTTC-----------CGGGSCHHHHHHHHHH
T ss_pred EEeccchhhcCCCcHHHHHHHHHHhcCCHHHHHHHHHHHHHHcCcCCcccccC-----------ChhhCCHHHHHHHHHH
Confidence 999996 45678999999986321 134566777777776 44433 3468999999999999
Q ss_pred HHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHH
Q psy1503 226 RAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGC 260 (265)
Q Consensus 226 Ral~~~~~illLDEp~s~LD~~~~~~i~~~~i~~~ 260 (265)
|||+.+|+++||||||++||+.++..+++ .+..+
T Consensus 151 raL~~~p~lllLDEPts~LD~~~~~~l~~-~l~~l 184 (266)
T 2yz2_A 151 SVIVHEPDILILDEPLVGLDREGKTDLLR-IVEKW 184 (266)
T ss_dssp HHHTTCCSEEEEESTTTTCCHHHHHHHHH-HHHHH
T ss_pred HHHHcCCCEEEEcCccccCCHHHHHHHHH-HHHHH
Confidence 99999999999999999999999999866 44444
No 37
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=100.00 E-value=6.7e-41 Score=310.21 Aligned_cols=158 Identities=27% Similarity=0.434 Sum_probs=129.7
Q ss_pred cEEEEeEEEEeCCCCCCcceeeceEEEcCCcEEEEEcCCCChHHHHHHHHhcCcCCCccEEEEcCe-----------EEE
Q psy1503 88 HVSLDNVTAQWSLQNADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSLGGT-----------VSY 156 (265)
Q Consensus 88 ~i~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g~-----------i~~ 156 (265)
.|+++|++++|+. ..+|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|. ++|
T Consensus 11 ~l~~~~l~~~y~~---~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~ 87 (372)
T 1v43_A 11 EVKLENLTKRFGN---FTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPKDRNISM 87 (372)
T ss_dssp CEEEEEEEEEETT---EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGGTEEE
T ss_pred eEEEEEEEEEECC---EEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCceEEEECCEECCCCChhhCcEEE
Confidence 4999999999953 46899999999999999999999999999999999999999999999983 999
Q ss_pred EecCCCCcc-ccHHHHHhcCCcc---c----HHHHHHHHHHhcchhHHhcCCCCCccccCCCCCCCCHHHHHHHHHHHHH
Q psy1503 157 ASQEPWIFA-ATIRQNILFGLPY---L----RRRYADVIRVCALQDDFDSLPNGDFTVVGERGASLSGGQKARINLARAV 228 (265)
Q Consensus 157 v~Q~~~l~~-~ti~eni~~~~~~---~----~~~~~~~~~~~~l~~~i~~l~~g~~t~vg~~g~~LSgGqrqRialARal 228 (265)
|+|++.+|+ .|++|||.|+... . .+++.++++.+++.+..++ ...+||||||||++|||||
T Consensus 88 v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r-----------~~~~LSGGq~QRvalArAL 156 (372)
T 1v43_A 88 VFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEELLNR-----------YPAQLSGGQRQRVAVARAI 156 (372)
T ss_dssp EEC------CCCHHHHHHTTCC--CCCHHHHHHHHHHHHHHTTCGGGTTS-----------CTTTCCSSCHHHHHHHHHH
T ss_pred EecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhHhcC-----------ChhhCCHHHHHHHHHHHHH
Confidence 999999996 5999999997532 1 2345566666666554433 4468999999999999999
Q ss_pred ccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHH
Q psy1503 229 YKNADIYLLDDPLSAVDMHVGKHLFEDCISGC 260 (265)
Q Consensus 229 ~~~~~illLDEp~s~LD~~~~~~i~~~~i~~~ 260 (265)
+.+|+++|||||||+||+..+.++.+. +..+
T Consensus 157 ~~~P~lLLLDEP~s~LD~~~r~~l~~~-l~~l 187 (372)
T 1v43_A 157 VVEPDVLLMDEPLSNLDAKLRVAMRAE-IKKL 187 (372)
T ss_dssp TTCCSEEEEESTTTTSCHHHHHHHHHH-HHHH
T ss_pred hcCCCEEEEcCCCccCCHHHHHHHHHH-HHHH
Confidence 999999999999999999999998664 4444
No 38
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=100.00 E-value=5.5e-41 Score=308.37 Aligned_cols=158 Identities=29% Similarity=0.488 Sum_probs=134.1
Q ss_pred cEEEEeEEEEeCCCCCCcceeeceEEEcCCcEEEEEcCCCChHHHHHHHHhcCcCCCccEEEEcCe-----------EEE
Q psy1503 88 HVSLDNVTAQWSLQNADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSLGGT-----------VSY 156 (265)
Q Consensus 88 ~i~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g~-----------i~~ 156 (265)
+|+++|++++|+. . +|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|. ++|
T Consensus 1 ml~~~~l~~~y~~---~-~l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~ 76 (348)
T 3d31_A 1 MIEIESLSRKWKN---F-SLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSPEKHDIAF 76 (348)
T ss_dssp CEEEEEEEEECSS---C-EEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCSEEEEEETTEECTTSCHHHHTCEE
T ss_pred CEEEEEEEEEECC---E-EEeeeEEEEcCCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCEECCCCchhhCcEEE
Confidence 3789999999952 4 899999999999999999999999999999999999999999999983 899
Q ss_pred EecCCCCccc-cHHHHHhcCCcc----cHHHHHHHHHHhcchhHHhcCCCCCccccCCCCCCCCHHHHHHHHHHHHHccC
Q psy1503 157 ASQEPWIFAA-TIRQNILFGLPY----LRRRYADVIRVCALQDDFDSLPNGDFTVVGERGASLSGGQKARINLARAVYKN 231 (265)
Q Consensus 157 v~Q~~~l~~~-ti~eni~~~~~~----~~~~~~~~~~~~~l~~~i~~l~~g~~t~vg~~g~~LSgGqrqRialARal~~~ 231 (265)
++|++.+|+. |++||+.|+... ..+++.++++.+++.+..+ ....+||||||||++|||||+.+
T Consensus 77 v~Q~~~l~~~ltv~enl~~~~~~~~~~~~~~v~~~l~~~~L~~~~~-----------~~~~~LSgGq~QRvalAraL~~~ 145 (348)
T 3d31_A 77 VYQNYSLFPHMNVKKNLEFGMRMKKIKDPKRVLDTARDLKIEHLLD-----------RNPLTLSGGEQQRVALARALVTN 145 (348)
T ss_dssp ECTTCCCCTTSCHHHHHHHHHHHHCCCCHHHHHHHHHHTTCTTTTT-----------SCGGGSCHHHHHHHHHHHHTTSC
T ss_pred EecCcccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHcCCchHhc-----------CChhhCCHHHHHHHHHHHHHHcC
Confidence 9999999975 999999986321 1245566666666654333 34569999999999999999999
Q ss_pred CCEEEEeCCCCCcCHHHHHHHHHHHHHHHh
Q psy1503 232 ADIYLLDDPLSAVDMHVGKHLFEDCISGCL 261 (265)
Q Consensus 232 ~~illLDEp~s~LD~~~~~~i~~~~i~~~l 261 (265)
|+++|||||||+||+..+..+.+ .+..+.
T Consensus 146 P~lLLLDEP~s~LD~~~~~~l~~-~l~~l~ 174 (348)
T 3d31_A 146 PKILLLDEPLSALDPRTQENARE-MLSVLH 174 (348)
T ss_dssp CSEEEEESSSTTSCHHHHHHHHH-HHHHHH
T ss_pred CCEEEEECccccCCHHHHHHHHH-HHHHHH
Confidence 99999999999999999999865 444443
No 39
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=100.00 E-value=4e-41 Score=310.70 Aligned_cols=158 Identities=25% Similarity=0.427 Sum_probs=133.4
Q ss_pred cEEEEeEEEEeCCCCCCcceeeceEEEcCCcEEEEEcCCCChHHHHHHHHhcCcCCCccEEEEcCe-----------EEE
Q psy1503 88 HVSLDNVTAQWSLQNADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSLGGT-----------VSY 156 (265)
Q Consensus 88 ~i~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g~-----------i~~ 156 (265)
.|+++|++++|+. .++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|. ++|
T Consensus 3 ~l~~~~l~~~y~~---~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~ 79 (362)
T 2it1_A 3 EIKLENIVKKFGN---FTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKIYFDEKDVTELPPKDRNVGL 79 (362)
T ss_dssp CEEEEEEEEESSS---SEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGTTEEE
T ss_pred EEEEEeEEEEECC---EEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHhHCcEEE
Confidence 4899999999952 46899999999999999999999999999999999999999999999983 999
Q ss_pred EecCCCCcc-ccHHHHHhcCCc---cc----HHHHHHHHHHhcchhHHhcCCCCCccccCCCCCCCCHHHHHHHHHHHHH
Q psy1503 157 ASQEPWIFA-ATIRQNILFGLP---YL----RRRYADVIRVCALQDDFDSLPNGDFTVVGERGASLSGGQKARINLARAV 228 (265)
Q Consensus 157 v~Q~~~l~~-~ti~eni~~~~~---~~----~~~~~~~~~~~~l~~~i~~l~~g~~t~vg~~g~~LSgGqrqRialARal 228 (265)
|+|++.+|+ .|++|||.|+.. .. .+++.++++.+++.+.. .....+|||||||||+|||||
T Consensus 80 v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~-----------~r~~~~LSGGq~QRvalArAL 148 (362)
T 2it1_A 80 VFQNWALYPHMTVYKNIAFPLELRKAPREEIDKKVREVAKMLHIDKLL-----------NRYPWQLSGGQQQRVAIARAL 148 (362)
T ss_dssp ECTTCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTCT-----------TCCGGGSCHHHHHHHHHHHHH
T ss_pred EecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHh-----------hCChhhCCHHHHHHHHHHHHH
Confidence 999999997 599999998632 11 23445555555554333 344579999999999999999
Q ss_pred ccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHH
Q psy1503 229 YKNADIYLLDDPLSAVDMHVGKHLFEDCISGC 260 (265)
Q Consensus 229 ~~~~~illLDEp~s~LD~~~~~~i~~~~i~~~ 260 (265)
+.+|+++|||||||+||+..+.++.+. +..+
T Consensus 149 ~~~P~lLLLDEP~s~LD~~~r~~l~~~-l~~l 179 (362)
T 2it1_A 149 VKEPEVLLLDEPLSNLDALLRLEVRAE-LKRL 179 (362)
T ss_dssp TTCCSEEEEESGGGGSCHHHHHHHHHH-HHHH
T ss_pred HcCCCEEEEECccccCCHHHHHHHHHH-HHHH
Confidence 999999999999999999999998653 4444
No 40
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=100.00 E-value=5.8e-41 Score=299.89 Aligned_cols=160 Identities=22% Similarity=0.307 Sum_probs=131.2
Q ss_pred CCcEEEEeEEEEeCCCCCCcceeeceEEEcCCcEEEEEcCCCChHHHHHHHHhcCcCCCccEEEEcC-------------
Q psy1503 86 KGHVSLDNVTAQWSLQNADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSLGG------------- 152 (265)
Q Consensus 86 ~~~i~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g------------- 152 (265)
...|+++|++++|+. .++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|
T Consensus 19 ~~~l~~~~l~~~y~~---~~vL~~isl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~ 95 (279)
T 2ihy_A 19 HMLIQLDQIGRMKQG---KTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATSGTVNLFGKMPGKVGYSAETV 95 (279)
T ss_dssp CEEEEEEEEEEEETT---EEEEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTBCCC---CCHHHH
T ss_pred CceEEEEeEEEEECC---EEEEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCeEEEECCEEcccccCCHHHH
Confidence 346999999999953 4699999999999999999999999999999999999999999999987
Q ss_pred --eEEEEecCCCC-ccc--cHHHHHhcCCcc--------c---HHHHHHHHHHhcchhHHhcCCCCCccccCCCCCCCCH
Q psy1503 153 --TVSYASQEPWI-FAA--TIRQNILFGLPY--------L---RRRYADVIRVCALQDDFDSLPNGDFTVVGERGASLSG 216 (265)
Q Consensus 153 --~i~~v~Q~~~l-~~~--ti~eni~~~~~~--------~---~~~~~~~~~~~~l~~~i~~l~~g~~t~vg~~g~~LSg 216 (265)
.++|++|++.+ +.. |++||+.++... . .+++.++++.+++.+ ....+..+|||
T Consensus 96 ~~~i~~v~Q~~~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~-----------~~~~~~~~LSg 164 (279)
T 2ihy_A 96 RQHIGFVSHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEIRNEAHQLLKLVGMSA-----------KAQQYIGYLST 164 (279)
T ss_dssp HTTEEEECHHHHTTSCTTSBHHHHHHTTC---------CCHHHHHHHHHHHHHTTCGG-----------GTTSBGGGSCH
T ss_pred cCcEEEEEcCcccccCCCCCHHHHHHhhhhhccccccCCcHHHHHHHHHHHHHcCChh-----------HhcCChhhCCH
Confidence 28999999864 443 999999986310 1 123344455554433 23455679999
Q ss_pred HHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHH
Q psy1503 217 GQKARINLARAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGC 260 (265)
Q Consensus 217 GqrqRialARal~~~~~illLDEp~s~LD~~~~~~i~~~~i~~~ 260 (265)
|||||++|||||+.+|+++||||||++||+.+++.+++ .+..+
T Consensus 165 GqkqRv~lAraL~~~p~lLlLDEPts~LD~~~~~~l~~-~l~~l 207 (279)
T 2ihy_A 165 GEKQRVMIARALMGQPQVLILDEPAAGLDFIARESLLS-ILDSL 207 (279)
T ss_dssp HHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHH-HHHHH
T ss_pred HHHHHHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHH-HHHHH
Confidence 99999999999999999999999999999999999866 44444
No 41
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=100.00 E-value=6.3e-41 Score=308.69 Aligned_cols=158 Identities=26% Similarity=0.387 Sum_probs=134.3
Q ss_pred cEEEEeEEEEeCCCCCCc--ceeeceEEEcCCcEEEEEcCCCChHHHHHHHHhcCcCCCccEEEEcC-------------
Q psy1503 88 HVSLDNVTAQWSLQNADL--TLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSLGG------------- 152 (265)
Q Consensus 88 ~i~~~~~~~~~~~~~~~~--~l~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g------------- 152 (265)
+|+++|++++|+. .+ +|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|
T Consensus 3 ~l~i~~l~~~y~~---~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~~~~ 79 (353)
T 1oxx_K 3 RIIVKNVSKVFKK---GKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPP 79 (353)
T ss_dssp CEEEEEEEEEEGG---GTEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCSEEEEEETTEEEEETTEESSCG
T ss_pred EEEEEeEEEEECC---EeeeeEeceEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECcccccccCCh
Confidence 4899999999953 45 89999999999999999999999999999999999999999999987
Q ss_pred ---eEEEEecCCCCcc-ccHHHHHhcCCcc---c----HHHHHHHHHHhcchhHHhcCCCCCccccCCCCCCCCHHHHHH
Q psy1503 153 ---TVSYASQEPWIFA-ATIRQNILFGLPY---L----RRRYADVIRVCALQDDFDSLPNGDFTVVGERGASLSGGQKAR 221 (265)
Q Consensus 153 ---~i~~v~Q~~~l~~-~ti~eni~~~~~~---~----~~~~~~~~~~~~l~~~i~~l~~g~~t~vg~~g~~LSgGqrqR 221 (265)
.++||+|++.+|+ .|++|||.|+... . .+++.++++.+++.+..+ ....+||||||||
T Consensus 80 ~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~-----------~~~~~LSGGq~QR 148 (353)
T 1oxx_K 80 EDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLN-----------HFPRELSGAQQQR 148 (353)
T ss_dssp GGSCEEEEETTSCCCTTSCHHHHHHGGGTTSSCCHHHHHHHHHHHHHHTTCGGGTT-----------SCGGGSCHHHHHH
T ss_pred hhCCEEEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchHhc-----------CChhhCCHHHHHH
Confidence 2899999999997 4999999987431 1 234556666666654433 3446899999999
Q ss_pred HHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHH
Q psy1503 222 INLARAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGC 260 (265)
Q Consensus 222 ialARal~~~~~illLDEp~s~LD~~~~~~i~~~~i~~~ 260 (265)
++|||||+.+|+++|||||||+||+..+.++.+. +..+
T Consensus 149 valAraL~~~P~lLLLDEP~s~LD~~~r~~l~~~-l~~l 186 (353)
T 1oxx_K 149 VALARALVKDPSLLLLDEPFSNLDARMRDSARAL-VKEV 186 (353)
T ss_dssp HHHHHHHTTCCSEEEEESTTTTSCGGGHHHHHHH-HHHH
T ss_pred HHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHH-HHHH
Confidence 9999999999999999999999999999988653 4444
No 42
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=100.00 E-value=6.5e-41 Score=293.49 Aligned_cols=154 Identities=27% Similarity=0.448 Sum_probs=128.3
Q ss_pred EEEEeEEEEeCCCCCCcceeeceEEEcCCcEEEEEcCCCChHHHHHHHHhcCcCCCccEEEEcCe-----------EEEE
Q psy1503 89 VSLDNVTAQWSLQNADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSLGGT-----------VSYA 157 (265)
Q Consensus 89 i~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g~-----------i~~v 157 (265)
++++|++++|+. +|+|+||++++ ++++|+||||||||||+++|+|+++|++|+|.++|. ++|+
T Consensus 2 l~~~~l~~~y~~-----~l~~isl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~i~~v 75 (240)
T 2onk_A 2 FLKVRAEKRLGN-----FRLNVDFEMGR-DYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPERRGIGFV 75 (240)
T ss_dssp CEEEEEEEEETT-----EEEEEEEEECS-SEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCTTTSCCBCC
T ss_pred EEEEEEEEEeCC-----EEeeeEEEECC-EEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCchhhCcEEEE
Confidence 689999999952 49999999999 999999999999999999999999999999999882 8999
Q ss_pred ecCCCCccc-cHHHHHhcCCccc-----HHHHHHHHHHhcchhHHhcCCCCCccccCCCCCCCCHHHHHHHHHHHHHccC
Q psy1503 158 SQEPWIFAA-TIRQNILFGLPYL-----RRRYADVIRVCALQDDFDSLPNGDFTVVGERGASLSGGQKARINLARAVYKN 231 (265)
Q Consensus 158 ~Q~~~l~~~-ti~eni~~~~~~~-----~~~~~~~~~~~~l~~~i~~l~~g~~t~vg~~g~~LSgGqrqRialARal~~~ 231 (265)
+|++.+|+. |++||+.++.... .+++.++++.+++.+ .......+||||||||++|||||+++
T Consensus 76 ~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LSgGqkqRv~lAral~~~ 144 (240)
T 2onk_A 76 PQDYALFPHLSVYRNIAYGLRNVERVERDRRVREMAEKLGIAH-----------LLDRKPARLSGGERQRVALARALVIQ 144 (240)
T ss_dssp CSSCCCCTTSCHHHHHHTTCTTSCHHHHHHHHHHHHHTTTCTT-----------TTTCCGGGSCHHHHHHHHHHHHHTTC
T ss_pred cCCCccCCCCcHHHHHHHHHHHcCCchHHHHHHHHHHHcCCHH-----------HhcCChhhCCHHHHHHHHHHHHHHcC
Confidence 999999875 9999999875321 123334444444332 23345679999999999999999999
Q ss_pred CCEEEEeCCCCCcCHHHHHHHHHHHHHHH
Q psy1503 232 ADIYLLDDPLSAVDMHVGKHLFEDCISGC 260 (265)
Q Consensus 232 ~~illLDEp~s~LD~~~~~~i~~~~i~~~ 260 (265)
|+++||||||++||+.+++.+++ .+..+
T Consensus 145 p~lllLDEPts~LD~~~~~~~~~-~l~~l 172 (240)
T 2onk_A 145 PRLLLLDEPLSAVDLKTKGVLME-ELRFV 172 (240)
T ss_dssp CSSBEEESTTSSCCHHHHHHHHH-HHHHH
T ss_pred CCEEEEeCCcccCCHHHHHHHHH-HHHHH
Confidence 99999999999999999999866 44444
No 43
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=100.00 E-value=1.9e-40 Score=307.39 Aligned_cols=159 Identities=25% Similarity=0.409 Sum_probs=134.5
Q ss_pred cEEEEeEEEEeCCCCCCcceeeceEEEcCCcEEEEEcCCCChHHHHHHHHhcCcCCCccEEEEcC---------------
Q psy1503 88 HVSLDNVTAQWSLQNADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSLGG--------------- 152 (265)
Q Consensus 88 ~i~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g--------------- 152 (265)
.|+++|++++|+. .++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|
T Consensus 3 ~l~~~~l~~~y~~---~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~~~~~~~ 79 (372)
T 1g29_1 3 GVRLVDVWKVFGE---VTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPPK 79 (372)
T ss_dssp EEEEEEEEEEETT---EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEEEEEGGGTEECCGG
T ss_pred EEEEEeEEEEECC---EEEEeeeEEEEcCCCEEEEECCCCcHHHHHHHHHHcCCCCCccEEEECCEECccccccccCCHh
Confidence 4899999999952 4689999999999999999999999999999999999999999999987
Q ss_pred --eEEEEecCCCCcc-ccHHHHHhcCCc---cc----HHHHHHHHHHhcchhHHhcCCCCCccccCCCCCCCCHHHHHHH
Q psy1503 153 --TVSYASQEPWIFA-ATIRQNILFGLP---YL----RRRYADVIRVCALQDDFDSLPNGDFTVVGERGASLSGGQKARI 222 (265)
Q Consensus 153 --~i~~v~Q~~~l~~-~ti~eni~~~~~---~~----~~~~~~~~~~~~l~~~i~~l~~g~~t~vg~~g~~LSgGqrqRi 222 (265)
.+|||+|++.+|+ .|++|||.|+.. .. .+++.++++.+++.+..+ ....+|||||||||
T Consensus 80 ~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~-----------r~~~~LSGGq~QRv 148 (372)
T 1g29_1 80 DRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTELLN-----------RKPRELSGGQRQRV 148 (372)
T ss_dssp GSSEEEECSCCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTCGGGTT-----------CCGGGSCHHHHHHH
T ss_pred HCCEEEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhc-----------CCcccCCHHHHHHH
Confidence 1899999999996 599999998632 11 234556666666654433 34568999999999
Q ss_pred HHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHHh
Q psy1503 223 NLARAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGCL 261 (265)
Q Consensus 223 alARal~~~~~illLDEp~s~LD~~~~~~i~~~~i~~~l 261 (265)
+|||||+.+|+++|||||||+||+..+.++.+ .+..+.
T Consensus 149 alArAL~~~P~lLLLDEP~s~LD~~~r~~l~~-~l~~l~ 186 (372)
T 1g29_1 149 ALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRA-ELKKLQ 186 (372)
T ss_dssp HHHHHHHTCCSEEEEECTTTTSCHHHHHHHHH-HHHHHH
T ss_pred HHHHHHhcCCCEEEECCCCccCCHHHHHHHHH-HHHHHH
Confidence 99999999999999999999999999999865 344443
No 44
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=100.00 E-value=1.9e-40 Score=291.96 Aligned_cols=158 Identities=18% Similarity=0.270 Sum_probs=124.8
Q ss_pred cEEEEeEEEEeCCCCCCcceeeceEEEcCCcEEEEEcCCCChHHHHHHHHhcC--cCCCccEEEEcCe------------
Q psy1503 88 HVSLDNVTAQWSLQNADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNE--LRISSGKVSLGGT------------ 153 (265)
Q Consensus 88 ~i~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~g~--~~~~~G~i~~~g~------------ 153 (265)
+++++|++++|+. .++|+|+||+|++|++++|+||||||||||+++|+|+ ++|++|+|.++|.
T Consensus 3 ~l~~~~l~~~y~~---~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~~~~~~~~~~~~ 79 (250)
T 2d2e_A 3 QLEIRDLWASIDG---ETILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVERGEILLDGENILELSPDERAR 79 (250)
T ss_dssp EEEEEEEEEEETT---EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTCTTCEEEEEEEEETTEECTTSCHHHHHH
T ss_pred eEEEEeEEEEECC---EEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEECCCCCHHHHHh
Confidence 5899999999953 5699999999999999999999999999999999998 8999999999883
Q ss_pred --EEEEecCCCCccc-cHHHHHhcCCc------cc----HHHHHHHHHHhcch-hHHhcCCCCCccccCCCCCC-CCHHH
Q psy1503 154 --VSYASQEPWIFAA-TIRQNILFGLP------YL----RRRYADVIRVCALQ-DDFDSLPNGDFTVVGERGAS-LSGGQ 218 (265)
Q Consensus 154 --i~~v~Q~~~l~~~-ti~eni~~~~~------~~----~~~~~~~~~~~~l~-~~i~~l~~g~~t~vg~~g~~-LSgGq 218 (265)
++|++|++.+|+. |++||+.++.. .. .+++.++++..++. +..+ ....+ |||||
T Consensus 80 ~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~-----------~~~~~~LSgGq 148 (250)
T 2d2e_A 80 KGLFLAFQYPVEVPGVTIANFLRLALQAKLGREVGVAEFWTKVKKALELLDWDESYLS-----------RYLNEGFSGGE 148 (250)
T ss_dssp TTBCCCCCCCC-CCSCBHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHTCCGGGGG-----------SBTTCC----H
T ss_pred CcEEEeccCCccccCCCHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHcCCChhHhc-----------CCcccCCCHHH
Confidence 7899999999875 99999986421 01 12334455555552 2222 23346 99999
Q ss_pred HHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHH
Q psy1503 219 KARINLARAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGC 260 (265)
Q Consensus 219 rqRialARal~~~~~illLDEp~s~LD~~~~~~i~~~~i~~~ 260 (265)
|||++|||||+++|+++|||||||+||+.++..+++ .+..+
T Consensus 149 kQrv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~-~l~~l 189 (250)
T 2d2e_A 149 KKRNEILQLLVLEPTYAVLDETDSGLDIDALKVVAR-GVNAM 189 (250)
T ss_dssp HHHHHHHHHHHHCCSEEEEECGGGTTCHHHHHHHHH-HHHHH
T ss_pred HHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHH-HHHHH
Confidence 999999999999999999999999999999999866 44444
No 45
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=100.00 E-value=4.3e-40 Score=291.96 Aligned_cols=155 Identities=22% Similarity=0.295 Sum_probs=130.2
Q ss_pred cEEEEeEEEEeCCC-CCCcceeeceEEEcCCcEEEEEcCCCChHHHHHHHHhcCcCCCccEEEEcC----------eEE-
Q psy1503 88 HVSLDNVTAQWSLQ-NADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSLGG----------TVS- 155 (265)
Q Consensus 88 ~i~~~~~~~~~~~~-~~~~~l~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g----------~i~- 155 (265)
+++++|++++|+.. ...++|+|+||+++ |++++|+||||||||||+++|+|++ |++|+|.++| .++
T Consensus 1 ml~~~~l~~~y~~~~~~~~il~~vsl~i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~-p~~G~I~~~g~~~~~~~~~~~i~~ 78 (263)
T 2pjz_A 1 MIQLKNVGITLSGKGYERFSLENINLEVN-GEKVIILGPNGSGKTTLLRAISGLL-PYSGNIFINGMEVRKIRNYIRYST 78 (263)
T ss_dssp CEEEEEEEEEEEEETTEEEEEEEEEEEEC-SSEEEEECCTTSSHHHHHHHHTTSS-CCEEEEEETTEEGGGCSCCTTEEE
T ss_pred CEEEEEEEEEeCCCCccceeEEeeeEEEC-CEEEEEECCCCCCHHHHHHHHhCCC-CCCcEEEECCEECcchHHhhheEE
Confidence 37899999999531 01468999999999 9999999999999999999999999 9999999998 489
Q ss_pred EEecCCCCccccHHHHHhcCCc---ccHHHHHHHHHHhcchhHHhcCCCCCccccCCCCCCCCHHHHHHHHHHHHHccCC
Q psy1503 156 YASQEPWIFAATIRQNILFGLP---YLRRRYADVIRVCALQDDFDSLPNGDFTVVGERGASLSGGQKARINLARAVYKNA 232 (265)
Q Consensus 156 ~v~Q~~~l~~~ti~eni~~~~~---~~~~~~~~~~~~~~l~~~i~~l~~g~~t~vg~~g~~LSgGqrqRialARal~~~~ 232 (265)
|++|++.+ +.|++||+.++.. ...+++.++++..++.. .....++.+||||||||++|||||+.+|
T Consensus 79 ~v~Q~~~l-~~tv~enl~~~~~~~~~~~~~~~~~l~~~gl~~----------~~~~~~~~~LSgGqkqRv~lAraL~~~p 147 (263)
T 2pjz_A 79 NLPEAYEI-GVTVNDIVYLYEELKGLDRDLFLEMLKALKLGE----------EILRRKLYKLSAGQSVLVRTSLALASQP 147 (263)
T ss_dssp CCGGGSCT-TSBHHHHHHHHHHHTCCCHHHHHHHHHHTTCCG----------GGGGSBGGGSCHHHHHHHHHHHHHHTCC
T ss_pred EeCCCCcc-CCcHHHHHHHhhhhcchHHHHHHHHHHHcCCCh----------hHhcCChhhCCHHHHHHHHHHHHHHhCC
Confidence 99999998 8899999987532 23444555565555540 2334567799999999999999999999
Q ss_pred CEEEEeCCCCCcCHHHHHHHHHH
Q psy1503 233 DIYLLDDPLSAVDMHVGKHLFED 255 (265)
Q Consensus 233 ~illLDEp~s~LD~~~~~~i~~~ 255 (265)
+++||||||++||+.+++.+++.
T Consensus 148 ~lllLDEPts~LD~~~~~~l~~~ 170 (263)
T 2pjz_A 148 EIVGLDEPFENVDAARRHVISRY 170 (263)
T ss_dssp SEEEEECTTTTCCHHHHHHHHHH
T ss_pred CEEEEECCccccCHHHHHHHHHH
Confidence 99999999999999999988663
No 46
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=100.00 E-value=1.4e-39 Score=286.47 Aligned_cols=153 Identities=25% Similarity=0.349 Sum_probs=131.2
Q ss_pred cEEEEeEEEEeCCCCCCcceeeceEEEcCCcEEEEEcCCCChHHHHHHHHhcCcCCCccEEEEcCe-------------E
Q psy1503 88 HVSLDNVTAQWSLQNADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSLGGT-------------V 154 (265)
Q Consensus 88 ~i~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g~-------------i 154 (265)
+++++|++++ ++|+|+||+|++|++++|+||||||||||+++|+|+++|+ |+|.++|. +
T Consensus 4 ~l~~~~l~~~-------~vl~~vsl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~-G~i~~~g~~~~~~~~~~~~~~i 75 (249)
T 2qi9_C 4 VMQLQDVAES-------TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSGK-GSIQFAGQPLEAWSATKLALHR 75 (249)
T ss_dssp EEEEEEEEET-------TTEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCE-EEEEETTEEGGGSCHHHHHHHE
T ss_pred EEEEEceEEE-------EEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC-eEEEECCEECCcCCHHHHhceE
Confidence 5899999975 4799999999999999999999999999999999999999 99999983 8
Q ss_pred EEEecCCCCccc-cHHHHHhcCCcc--cHHHHHHHHHHhcchhHHhcCCCCCccccCCCCCCCCHHHHHHHHHHHHHccC
Q psy1503 155 SYASQEPWIFAA-TIRQNILFGLPY--LRRRYADVIRVCALQDDFDSLPNGDFTVVGERGASLSGGQKARINLARAVYKN 231 (265)
Q Consensus 155 ~~v~Q~~~l~~~-ti~eni~~~~~~--~~~~~~~~~~~~~l~~~i~~l~~g~~t~vg~~g~~LSgGqrqRialARal~~~ 231 (265)
+|++|++.+|+. |++||+.++... ..+++.++++.+++.+.. ..++.+||||||||++|||||+++
T Consensus 76 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LSgGq~qrv~lAraL~~~ 144 (249)
T 2qi9_C 76 AYLSQQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGALALDDKL-----------GRSTNQLSGGEWQRVRLAAVVLQI 144 (249)
T ss_dssp EEECSCCCCCTTCBHHHHHHTTCSSTTCHHHHHHHHHHTTCGGGT-----------TSBGGGCCHHHHHHHHHHHHHHHH
T ss_pred EEECCCCccCCCCcHHHHHHHhhccCCcHHHHHHHHHHcCChhHh-----------cCChhhCCHHHHHHHHHHHHHHcC
Confidence 999999998864 999999987421 244566667776665433 345679999999999999999999
Q ss_pred CC-------EEEEeCCCCCcCHHHHHHHHHHHHHHH
Q psy1503 232 AD-------IYLLDDPLSAVDMHVGKHLFEDCISGC 260 (265)
Q Consensus 232 ~~-------illLDEp~s~LD~~~~~~i~~~~i~~~ 260 (265)
|+ ++||||||++||+.++..+++ .+..+
T Consensus 145 p~~~~~~~~lllLDEPts~LD~~~~~~l~~-~l~~l 179 (249)
T 2qi9_C 145 TPQANPAGQLLLLDEPMNSLDVAQQSALDK-ILSAL 179 (249)
T ss_dssp CTTTCTTCCEEEESSTTTTCCHHHHHHHHH-HHHHH
T ss_pred CCcCCCCCeEEEEECCcccCCHHHHHHHHH-HHHHH
Confidence 99 999999999999999999866 44444
No 47
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=100.00 E-value=2e-39 Score=288.16 Aligned_cols=160 Identities=19% Similarity=0.316 Sum_probs=126.7
Q ss_pred CcEEEEeEEEEeCCCCCCcceeeceEEEcCCcEEEEEcCCCChHHHHHHHHhcC--cCCCccEEEEcCe-----------
Q psy1503 87 GHVSLDNVTAQWSLQNADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNE--LRISSGKVSLGGT----------- 153 (265)
Q Consensus 87 ~~i~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~g~--~~~~~G~i~~~g~----------- 153 (265)
.+|+++|++++|+ ..++|+|+||+|++|++++|+||||||||||+++|+|+ ++|++|+|.++|.
T Consensus 19 ~~l~~~~l~~~y~---~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~ 95 (267)
T 2zu0_C 19 HMLSIKDLHVSVE---DKAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLALSPEDRA 95 (267)
T ss_dssp -CEEEEEEEEEET---TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTCTTCEEEEEEEEETTEEGGGSCHHHHH
T ss_pred ceEEEEeEEEEEC---CEEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCcCCHHHHh
Confidence 4699999999995 35699999999999999999999999999999999999 5799999999983
Q ss_pred ---EEEEecCCCCccc-cHHHHHhcCCc----------ccH----HHHHHHHHHhcchhHHhcCCCCCccccCCCCC-CC
Q psy1503 154 ---VSYASQEPWIFAA-TIRQNILFGLP----------YLR----RRYADVIRVCALQDDFDSLPNGDFTVVGERGA-SL 214 (265)
Q Consensus 154 ---i~~v~Q~~~l~~~-ti~eni~~~~~----------~~~----~~~~~~~~~~~l~~~i~~l~~g~~t~vg~~g~-~L 214 (265)
++|++|++.+|+. |+.||+.++.. ... +++.++++..++... ....... +|
T Consensus 96 ~~~i~~v~Q~~~l~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~----------~~~~~~~~~L 165 (267)
T 2zu0_C 96 GEGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQETLDRFDFQDLMEEKIALLKMPED----------LLTRSVNVGF 165 (267)
T ss_dssp HHTEEEECSSCCCCTTCBHHHHHHHHHHHHHHGGGCCCCCHHHHHHHHHHHHHHTTCCTT----------TTTSBTTTTC
T ss_pred hCCEEEEccCccccccccHHHHHHHHHHhhhhhhccccCCHHHHHHHHHHHHHHcCCChh----------HhcCCcccCC
Confidence 8999999998875 99999875320 011 122333333333210 1122333 59
Q ss_pred CHHHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHH
Q psy1503 215 SGGQKARINLARAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGC 260 (265)
Q Consensus 215 SgGqrqRialARal~~~~~illLDEp~s~LD~~~~~~i~~~~i~~~ 260 (265)
|||||||++|||||+.+|+++|||||||+||+.+++.+++ .+..+
T Consensus 166 SgGq~QRv~iAraL~~~p~lLlLDEPts~LD~~~~~~l~~-~l~~l 210 (267)
T 2zu0_C 166 SGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKVVAD-GVNSL 210 (267)
T ss_dssp CHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHH-HHHTT
T ss_pred CHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHH-HHHHH
Confidence 9999999999999999999999999999999999999866 44433
No 48
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=100.00 E-value=1.7e-33 Score=275.48 Aligned_cols=159 Identities=21% Similarity=0.288 Sum_probs=129.1
Q ss_pred CcEEEEeEEEEeCCCCCCcceeeceEEEcCCcEEEEEcCCCChHHHHHHHHhcCcCCCccEEEEcCeEEEEecCCCCc-c
Q psy1503 87 GHVSLDNVTAQWSLQNADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSLGGTVSYASQEPWIF-A 165 (265)
Q Consensus 87 ~~i~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g~i~~v~Q~~~l~-~ 165 (265)
..++++|++++|+. ..|+++||++++||+++|+||||||||||+++|+|+++|++|+|.+...++|+||++.++ +
T Consensus 356 ~~l~~~~l~~~~~~----~~l~~~~~~v~~Gei~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~~~i~~v~Q~~~~~~~ 431 (607)
T 3bk7_A 356 TLVEYPRLVKDYGS----FKLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWDLTVAYKPQYIKAEYE 431 (607)
T ss_dssp EEEEECCEEEECSS----CEEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCSBSCCCCCCCEEEECSSCCCCCS
T ss_pred eEEEEeceEEEecc----eEEEecccccCCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEEeeEEEEEecCccCCCC
Confidence 46899999999953 369999999999999999999999999999999999999999998877899999998764 5
Q ss_pred ccHHHHHhcC-Cc-c-cHHHHHHHHHHhcchhHHhcCCCCCccccCCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCC
Q psy1503 166 ATIRQNILFG-LP-Y-LRRRYADVIRVCALQDDFDSLPNGDFTVVGERGASLSGGQKARINLARAVYKNADIYLLDDPLS 242 (265)
Q Consensus 166 ~ti~eni~~~-~~-~-~~~~~~~~~~~~~l~~~i~~l~~g~~t~vg~~g~~LSgGqrqRialARal~~~~~illLDEp~s 242 (265)
.|+.||+.+. .. . ..++..++++..++.+ .......+|||||||||+|||||+++|++|||||||+
T Consensus 432 ~tv~e~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LSGGe~QRv~iAraL~~~p~lLlLDEPt~ 500 (607)
T 3bk7_A 432 GTVYELLSKIDSSKLNSNFYKTELLKPLGIID-----------LYDRNVEDLSGGELQRVAIAATLLRDADIYLLDEPSA 500 (607)
T ss_dssp SBHHHHHHHHHHHHHHCHHHHHHTHHHHTCTT-----------TTTSBGGGCCHHHHHHHHHHHHHTSCCSEEEEECTTT
T ss_pred CcHHHHHHhhhccCCCHHHHHHHHHHHcCCch-----------HhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCcc
Confidence 7999998653 11 1 1223334444444422 2334567999999999999999999999999999999
Q ss_pred CcCHHHHHHHHHHHHHHHh
Q psy1503 243 AVDMHVGKHLFEDCISGCL 261 (265)
Q Consensus 243 ~LD~~~~~~i~~~~i~~~l 261 (265)
+||+.+...+++ .+..+.
T Consensus 501 ~LD~~~~~~l~~-~l~~l~ 518 (607)
T 3bk7_A 501 YLDVEQRLAVSR-AIRHLM 518 (607)
T ss_dssp TCCHHHHHHHHH-HHHHHH
T ss_pred CCCHHHHHHHHH-HHHHHH
Confidence 999999988865 455543
No 49
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=100.00 E-value=2.2e-33 Score=271.28 Aligned_cols=159 Identities=21% Similarity=0.301 Sum_probs=128.3
Q ss_pred CcEEEEeEEEEeCCCCCCcceeeceEEEcCCcEEEEEcCCCChHHHHHHHHhcCcCCCccEEEEcCe-EEEEecCCCCc-
Q psy1503 87 GHVSLDNVTAQWSLQNADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSLGGT-VSYASQEPWIF- 164 (265)
Q Consensus 87 ~~i~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g~-i~~v~Q~~~l~- 164 (265)
..++++|+++.|+. ..++++||+|++||+++|+||||||||||+++|+|+++|++|+|.+++. ++|++|++...
T Consensus 268 ~~l~~~~l~~~~~~----~~l~~~~~~i~~Gei~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~~i~~~~q~~~~~~ 343 (538)
T 3ozx_A 268 TKMKWTKIIKKLGD----FQLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEITADEGSVTPEKQILSYKPQRIFPNY 343 (538)
T ss_dssp EEEEECCEEEEETT----EEEEECCEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSBCCEESSCCCEEEECSSCCCCC
T ss_pred ceEEEcceEEEECC----EEEEeccceECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCeeeEeechhccccc
Confidence 46889999999953 4688899999999999999999999999999999999999999998874 99999997653
Q ss_pred cccHHHHHhcCCc-c---cHHHHHHHHHHhcchhHHhcCCCCCccccCCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCC
Q psy1503 165 AATIRQNILFGLP-Y---LRRRYADVIRVCALQDDFDSLPNGDFTVVGERGASLSGGQKARINLARAVYKNADIYLLDDP 240 (265)
Q Consensus 165 ~~ti~eni~~~~~-~---~~~~~~~~~~~~~l~~~i~~l~~g~~t~vg~~g~~LSgGqrqRialARal~~~~~illLDEp 240 (265)
..|+++|+.+... . ......++++..++.+ .......+|||||||||+|||||+.+|+|||||||
T Consensus 344 ~~tv~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LSGGq~QRv~iAraL~~~p~lLlLDEP 412 (538)
T 3ozx_A 344 DGTVQQYLENASKDALSTSSWFFEEVTKRLNLHR-----------LLESNVNDLSGGELQKLYIAATLAKEADLYVLDQP 412 (538)
T ss_dssp SSBHHHHHHHHCSSTTCTTSHHHHHTTTTTTGGG-----------CTTSBGGGCCHHHHHHHHHHHHHHSCCSEEEEEST
T ss_pred CCCHHHHHHHhhhhccchhHHHHHHHHHHcCCHH-----------HhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 6799999976321 1 1122233333333332 23456679999999999999999999999999999
Q ss_pred CCCcCHHHHHHHHHHHHHHHh
Q psy1503 241 LSAVDMHVGKHLFEDCISGCL 261 (265)
Q Consensus 241 ~s~LD~~~~~~i~~~~i~~~l 261 (265)
|++||+.+...+++ .+..+.
T Consensus 413 T~gLD~~~~~~i~~-~l~~l~ 432 (538)
T 3ozx_A 413 SSYLDVEERYIVAK-AIKRVT 432 (538)
T ss_dssp TTTCCHHHHHHHHH-HHHHHH
T ss_pred ccCCCHHHHHHHHH-HHHHHH
Confidence 99999999988865 444443
No 50
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=100.00 E-value=2e-33 Score=271.78 Aligned_cols=159 Identities=20% Similarity=0.286 Sum_probs=127.2
Q ss_pred CcEEEEeEEEEeCCCCCCcceeeceEEEcCCcEEEEEcCCCChHHHHHHHHhcCcCCCccEEEEcCeEEEEecCCCCc-c
Q psy1503 87 GHVSLDNVTAQWSLQNADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSLGGTVSYASQEPWIF-A 165 (265)
Q Consensus 87 ~~i~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g~i~~v~Q~~~l~-~ 165 (265)
..++++|+++.|+. ..|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.+...++|++|++..+ +
T Consensus 286 ~~l~~~~l~~~~~~----~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~~~i~~v~Q~~~~~~~ 361 (538)
T 1yqt_A 286 TLVTYPRLVKDYGS----FRLEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKIEWDLTVAYKPQYIKADYE 361 (538)
T ss_dssp EEEEECCEEEEETT----EEEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCSBCCCCCCCCEEEECSSCCCCCS
T ss_pred eEEEEeeEEEEECC----EEEEeCccccCCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECceEEEEecCCcCCCC
Confidence 46899999999952 368999999999999999999999999999999999999999998877899999998764 5
Q ss_pred ccHHHHHhcC-Cc-c-cHHHHHHHHHHhcchhHHhcCCCCCccccCCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCC
Q psy1503 166 ATIRQNILFG-LP-Y-LRRRYADVIRVCALQDDFDSLPNGDFTVVGERGASLSGGQKARINLARAVYKNADIYLLDDPLS 242 (265)
Q Consensus 166 ~ti~eni~~~-~~-~-~~~~~~~~~~~~~l~~~i~~l~~g~~t~vg~~g~~LSgGqrqRialARal~~~~~illLDEp~s 242 (265)
.|+.+|+... .. . ..+...++++..++ .........+||||||||++|||||+.+|+++||||||+
T Consensus 362 ~tv~~~~~~~~~~~~~~~~~~~~~l~~~~l-----------~~~~~~~~~~LSGGe~qrv~lAraL~~~p~lLlLDEPt~ 430 (538)
T 1yqt_A 362 GTVYELLSKIDASKLNSNFYKTELLKPLGI-----------IDLYDREVNELSGGELQRVAIAATLLRDADIYLLDEPSA 430 (538)
T ss_dssp SBHHHHHHHHHHHHHTCHHHHHHTTTTTTC-----------GGGTTSBGGGCCHHHHHHHHHHHHHTSCCSEEEEECTTT
T ss_pred CcHHHHHHhhhccCCCHHHHHHHHHHHcCC-----------hhhhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCcc
Confidence 7999987643 10 0 11112222222222 223456678999999999999999999999999999999
Q ss_pred CcCHHHHHHHHHHHHHHHh
Q psy1503 243 AVDMHVGKHLFEDCISGCL 261 (265)
Q Consensus 243 ~LD~~~~~~i~~~~i~~~l 261 (265)
+||..+...|++ .+..+.
T Consensus 431 ~LD~~~~~~i~~-~l~~l~ 448 (538)
T 1yqt_A 431 YLDVEQRLAVSR-AIRHLM 448 (538)
T ss_dssp TCCHHHHHHHHH-HHHHHH
T ss_pred cCCHHHHHHHHH-HHHHHH
Confidence 999999998865 444443
No 51
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=99.97 E-value=7.7e-32 Score=273.67 Aligned_cols=165 Identities=22% Similarity=0.317 Sum_probs=120.5
Q ss_pred CcEEEEeEEEEeCCCCCCcceeeceEEEcCCcEEEEEcCCCChHHHHHHHHhcCcCCCccEEEEcC--eEEEEecCCCC-
Q psy1503 87 GHVSLDNVTAQWSLQNADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSLGG--TVSYASQEPWI- 163 (265)
Q Consensus 87 ~~i~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g--~i~~v~Q~~~l- 163 (265)
..++++|++|+|++. .+++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.+++ .++|++|++..
T Consensus 670 ~mL~v~nLs~~Y~g~-~~~iL~dVSl~I~~GeivaIiGpNGSGKSTLLklLaGll~P~sG~I~~~~~~~I~yv~Q~~~~~ 748 (986)
T 2iw3_A 670 AIVKVTNMEFQYPGT-SKPQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPTSGEVYTHENCRIAYIKQHAFAH 748 (986)
T ss_dssp EEEEEEEEEECCTTC-SSCSEEEEEEEEETTCEEEECSCCCHHHHHHHHHHTTSSCCSEEEEEECTTCCEEEECHHHHHH
T ss_pred ceEEEEeeEEEeCCC-CceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEcCccceEeeccchhhh
Confidence 469999999999642 25689999999999999999999999999999999999999999999987 59999998631
Q ss_pred ----ccccHHHHHhc-----------------------------------------------------------------
Q psy1503 164 ----FAATIRQNILF----------------------------------------------------------------- 174 (265)
Q Consensus 164 ----~~~ti~eni~~----------------------------------------------------------------- 174 (265)
.+.|+++++.+
T Consensus 749 l~~~~~~t~~e~i~~~~q~g~d~~~~~~~~~~l~~ed~~~~~~~~~~~g~~r~~~~i~~r~~~~~~~~~e~~~sv~ENi~ 828 (986)
T 2iw3_A 749 IESHLDKTPSEYIQWRFQTGEDRETMDRANRQINENDAEAMNKIFKIEGTPRRIAGIHSRRKFKNTYEYECSFLLGENIG 828 (986)
T ss_dssp GGGCTTSCHHHHHHHHTTTSSCTTTTTTTSCCCCSSCSSGGGCCEEETTEEEEEEEEEEEEEETTEEEEEEEEEEEESTT
T ss_pred hhcccccCHHHHHHHHhhccchhhhhhhhhhccchhhhhhhhcccccccchhhhhhhhhhhhhcccchhhhhhhhhhhhh
Confidence 13466666532
Q ss_pred -CCcc------------cH----HHHHHHHH-----------------HhcchhHHhcCCCCCccc--cCCCCCCCCHHH
Q psy1503 175 -GLPY------------LR----RRYADVIR-----------------VCALQDDFDSLPNGDFTV--VGERGASLSGGQ 218 (265)
Q Consensus 175 -~~~~------------~~----~~~~~~~~-----------------~~~l~~~i~~l~~g~~t~--vg~~g~~LSgGq 218 (265)
+... .. ..+.+... .....+.+..+ |+... ...+..+|||||
T Consensus 829 l~~~~~~~lt~~en~~~~~~~l~~~~~~~v~~~d~~~~~~~g~~~~~~~~~i~~~Le~l--GL~~~~~~~~~~~~LSGGQ 906 (986)
T 2iw3_A 829 MKSERWVPMMSVDNAWIPRGELVESHSKMVAEVDMKEALASGQFRPLTRKEIEEHCSML--GLDPEIVSHSRIRGLSGGQ 906 (986)
T ss_dssp STTCEEEECCGGGCEEEEGGGTHHHHHHHHHHHHHHHHHHTTCCCCCCHHHHHHHHHHT--TCCHHHHHHSCGGGCCHHH
T ss_pred cccccccccchhhhhhhhhHHHhhhHhhhhhhhhhhhhhhhcccchhHHHHHHHHHHHc--CCCchhhcCCCccccCHHH
Confidence 1000 00 00000000 00011122222 22221 234567999999
Q ss_pred HHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHH
Q psy1503 219 KARINLARAVYKNADIYLLDDPLSAVDMHVGKHLFE 254 (265)
Q Consensus 219 rqRialARal~~~~~illLDEp~s~LD~~~~~~i~~ 254 (265)
|||++|||||+.+|+++||||||++||+.+...+.+
T Consensus 907 kQRVaLArAL~~~P~LLLLDEPT~gLD~~s~~~L~~ 942 (986)
T 2iw3_A 907 KVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSK 942 (986)
T ss_dssp HHHHHHHHHHTTCCSEEEEECGGGTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHH
Confidence 999999999999999999999999999999888765
No 52
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=99.97 E-value=5e-32 Score=265.05 Aligned_cols=157 Identities=20% Similarity=0.310 Sum_probs=124.6
Q ss_pred cEEE--------EeEEEEeCCCCCCcceeeceEEEcCCcEEEEEcCCCChHHHHHHHHhcCcCCCccEE---------EE
Q psy1503 88 HVSL--------DNVTAQWSLQNADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKV---------SL 150 (265)
Q Consensus 88 ~i~~--------~~~~~~~~~~~~~~~l~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i---------~~ 150 (265)
.|++ +|++++|+.. ..+|+++| ++++|++++|+||||||||||+++|+|+++|++|++ .+
T Consensus 83 ~i~i~~l~~~~~~~ls~~yg~~--~~~l~~vs-~i~~Ge~~~LiG~NGsGKSTLlkiL~Gll~p~~G~~~~~~~~~~~~~ 159 (607)
T 3bk7_A 83 AISIVNLPEQLDEDCVHRYGVN--AFVLYRLP-IVKDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDNVIRAF 159 (607)
T ss_dssp CCEEEEECTTGGGSEEEECSTT--CCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHTTSSCCCTTTTCCCHHHHHHHT
T ss_pred eEEEecCCccccCCeEEEECCC--CeeeCCCC-CCCCCCEEEEECCCCChHHHHHHHHhCCCCCCCCccccccchhhhee
Confidence 4788 8999999632 25899999 999999999999999999999999999999999995 23
Q ss_pred cC---------------eEEEEecCCC----CccccHHHHHhcCCcccHHHHHHHHHHhcchhHHhcCCCCCccccCCCC
Q psy1503 151 GG---------------TVSYASQEPW----IFAATIRQNILFGLPYLRRRYADVIRVCALQDDFDSLPNGDFTVVGERG 211 (265)
Q Consensus 151 ~g---------------~i~~v~Q~~~----l~~~ti~eni~~~~~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~vg~~g 211 (265)
+| .+++++|... ++.+|+.||+.... ..++..++++..++.+..+ ...
T Consensus 160 ~G~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~tv~e~l~~~~--~~~~~~~~L~~lgL~~~~~-----------~~~ 226 (607)
T 3bk7_A 160 RGNELQNYFERLKNGEIRPVVKPQYVDLLPKAVKGKVRELLKKVD--EVGKFEEVVKELELENVLD-----------REL 226 (607)
T ss_dssp TTSTHHHHHHHHHHTSCCCEEECSCGGGGGGTCCSBHHHHHHHTC--CSSCHHHHHHHTTCTTGGG-----------SBG
T ss_pred CCEehhhhhhhhhhhhcceEEeechhhhchhhccccHHHHhhhhH--HHHHHHHHHHHcCCCchhC-----------CCh
Confidence 33 2678888643 33459999987532 1234556677766654333 345
Q ss_pred CCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHHh
Q psy1503 212 ASLSGGQKARINLARAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGCL 261 (265)
Q Consensus 212 ~~LSgGqrqRialARal~~~~~illLDEp~s~LD~~~~~~i~~~~i~~~l 261 (265)
.+||||||||++|||||+.+|++||||||||+||+.+...+++ .+..+.
T Consensus 227 ~~LSGGekQRvaIAraL~~~P~lLlLDEPTs~LD~~~~~~l~~-~L~~l~ 275 (607)
T 3bk7_A 227 HQLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVAR-VIRRLA 275 (607)
T ss_dssp GGCCHHHHHHHHHHHHHHSCCSEEEEECTTTTCCHHHHHHHHH-HHHHHH
T ss_pred hhCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHH-HHHHHH
Confidence 6899999999999999999999999999999999999988865 444443
No 53
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=99.97 E-value=7.1e-32 Score=260.85 Aligned_cols=156 Identities=19% Similarity=0.284 Sum_probs=120.1
Q ss_pred EEE-EeEEEEeCCCCCCcceeeceEEEcCCcEEEEEcCCCChHHHHHHHHhcCcCCCccEE---------EEcC------
Q psy1503 89 VSL-DNVTAQWSLQNADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKV---------SLGG------ 152 (265)
Q Consensus 89 i~~-~~~~~~~~~~~~~~~l~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i---------~~~g------ 152 (265)
.++ +|++++|+.. ..+++++| +|++||+++|+||||||||||+++|+|+++|++|++ .++|
T Consensus 21 ~~~~~~ls~~yg~~--~~~l~~vs-~i~~Ge~~~LvG~NGaGKSTLlk~l~Gl~~p~~G~~~~~~~~~~~~~~g~~~~~~ 97 (538)
T 1yqt_A 21 EQLEEDCVHRYGVN--AFVLYRLP-VVKEGMVVGIVGPNGTGKSTAVKILAGQLIPNLCGDNDSWDGVIRAFRGNELQNY 97 (538)
T ss_dssp ---CCCEEEECSTT--CCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSCCCTTTTCCSHHHHHHHTTTSTHHHH
T ss_pred hhHhcCcEEEECCc--cccccCcC-cCCCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCccCcchhhhHHhhCCccHHHH
Confidence 344 5899999632 25899999 999999999999999999999999999999999995 2333
Q ss_pred ---------eEEEEecCCCCc----cccHHHHHhcCCcccHHHHHHHHHHhcchhHHhcCCCCCccccCCCCCCCCHHHH
Q psy1503 153 ---------TVSYASQEPWIF----AATIRQNILFGLPYLRRRYADVIRVCALQDDFDSLPNGDFTVVGERGASLSGGQK 219 (265)
Q Consensus 153 ---------~i~~v~Q~~~l~----~~ti~eni~~~~~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~vg~~g~~LSgGqr 219 (265)
.+++++|...++ .+|+.+|+.... ..++..++++..++.... .....+||||||
T Consensus 98 ~~~~~~~~~~~~~~~q~~~~~~~~~~~~v~e~~~~~~--~~~~~~~~l~~lgl~~~~-----------~~~~~~LSgGek 164 (538)
T 1yqt_A 98 FEKLKNGEIRPVVKPQYVDLIPKAVKGKVIELLKKAD--ETGKLEEVVKALELENVL-----------EREIQHLSGGEL 164 (538)
T ss_dssp HHHHHTTSCCCEEECSCGGGSGGGCCSBHHHHHHHHC--SSSCHHHHHHHTTCTTTT-----------TSBGGGCCHHHH
T ss_pred HHHHHHHhhhhhhhhhhhhhcchhhhccHHHHHhhhh--HHHHHHHHHHHcCCChhh-----------hCChhhCCHHHH
Confidence 267888875433 358999886421 123455666666664322 234578999999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHHh
Q psy1503 220 ARINLARAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGCL 261 (265)
Q Consensus 220 qRialARal~~~~~illLDEp~s~LD~~~~~~i~~~~i~~~l 261 (265)
|||+|||||+.+|+++|||||||+||+.+...+++ .+..+.
T Consensus 165 QRv~iAraL~~~P~lLlLDEPTs~LD~~~~~~l~~-~L~~l~ 205 (538)
T 1yqt_A 165 QRVAIAAALLRNATFYFFDEPSSYLDIRQRLNAAR-AIRRLS 205 (538)
T ss_dssp HHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHH-HHHHHH
T ss_pred HHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHH-HHHHHH
Confidence 99999999999999999999999999999988865 444443
No 54
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=99.97 E-value=6.9e-31 Score=256.87 Aligned_cols=155 Identities=22% Similarity=0.289 Sum_probs=121.3
Q ss_pred EeEEEEeCCCCCCcceeeceEEEcCC-----cEEEEEcCCCChHHHHHHHHhcCcCCCccEEEEcCeEEEEecCCCC-cc
Q psy1503 92 DNVTAQWSLQNADLTLNAVSITFKPK-----QLACIIGAIGAGKTSLLHIILNELRISSGKVSLGGTVSYASQEPWI-FA 165 (265)
Q Consensus 92 ~~~~~~~~~~~~~~~l~~isl~i~~G-----~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g~i~~v~Q~~~l-~~ 165 (265)
.+++++|+. ...+++++||++++| |+++|+||||||||||+++|+|+++|++|+..-.-.++|++|+... |+
T Consensus 350 ~~~~~~y~~--~~~~l~~vsl~v~~G~~~~GEiv~iiG~NGsGKSTLlk~l~Gl~~p~~G~~~~~~~i~~~~q~~~~~~~ 427 (608)
T 3j16_B 350 ASRAFSYPS--LKKTQGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKPDEGQDIPKLNVSMKPQKIAPKFP 427 (608)
T ss_dssp SSSCCEECC--EEEECSSCEEEECCEECCTTCEEEEESCTTSSHHHHHHHHHTSSCCSBCCCCCSCCEEEECSSCCCCCC
T ss_pred cceeEEecC--cccccCceEEEEecCccccceEEEEECCCCCcHHHHHHHHhcCCCCCCCcCccCCcEEEecccccccCC
Confidence 556778853 235789999999999 7899999999999999999999999999985333359999999754 57
Q ss_pred ccHHHHHhcCCc---ccHHHHHHHHHHhcchhHHhcCCCCCccccCCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCC
Q psy1503 166 ATIRQNILFGLP---YLRRRYADVIRVCALQDDFDSLPNGDFTVVGERGASLSGGQKARINLARAVYKNADIYLLDDPLS 242 (265)
Q Consensus 166 ~ti~eni~~~~~---~~~~~~~~~~~~~~l~~~i~~l~~g~~t~vg~~g~~LSgGqrqRialARal~~~~~illLDEp~s 242 (265)
.|+++|+..... .......++++..++.+. ......+|||||||||+|||||+.+|+||||||||+
T Consensus 428 ~tv~e~~~~~~~~~~~~~~~~~~~l~~l~l~~~-----------~~~~~~~LSGGqkQRv~iAraL~~~p~lLlLDEPT~ 496 (608)
T 3j16_B 428 GTVRQLFFKKIRGQFLNPQFQTDVVKPLRIDDI-----------IDQEVQHLSGGELQRVAIVLALGIPADIYLIDEPSA 496 (608)
T ss_dssp SBHHHHHHHHCSSTTTSHHHHHHTHHHHTSTTT-----------SSSBSSSCCHHHHHHHHHHHHTTSCCSEEEECCTTT
T ss_pred ccHHHHHHHHhhcccccHHHHHHHHHHcCChhh-----------hcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCCC
Confidence 899999864221 123334455555554322 334567999999999999999999999999999999
Q ss_pred CcCHHHHHHHHHHHHHHH
Q psy1503 243 AVDMHVGKHLFEDCISGC 260 (265)
Q Consensus 243 ~LD~~~~~~i~~~~i~~~ 260 (265)
+||+.+...+++ .+..+
T Consensus 497 gLD~~~~~~i~~-ll~~l 513 (608)
T 3j16_B 497 YLDSEQRIICSK-VIRRF 513 (608)
T ss_dssp TCCHHHHHHHHH-HHHHH
T ss_pred CCCHHHHHHHHH-HHHHH
Confidence 999999988865 44444
No 55
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=99.96 E-value=1.5e-28 Score=249.66 Aligned_cols=151 Identities=22% Similarity=0.279 Sum_probs=117.0
Q ss_pred CcEEEEeEEEEeCCCCCCcceeeceEEEcCCcEEEEEcCCCChHHHHHHHHhc-CcC--CCccEEEEcCeEEEEecCC-C
Q psy1503 87 GHVSLDNVTAQWSLQNADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILN-ELR--ISSGKVSLGGTVSYASQEP-W 162 (265)
Q Consensus 87 ~~i~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~g-~~~--~~~G~i~~~g~i~~v~Q~~-~ 162 (265)
..+...|++++|++ ..+|+|+||+|++|++++|+||||||||||+++|+| .+. +..+. ..++|++|++ .
T Consensus 434 ~~L~~~~ls~~yg~---~~iL~~vsl~I~~Ge~v~LiGpNGsGKSTLLk~LagG~i~g~~~~~~----~~~~~v~q~~~~ 506 (986)
T 2iw3_A 434 EDLCNCEFSLAYGA---KILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIANGQVDGFPTQEE----CRTVYVEHDIDG 506 (986)
T ss_dssp CEEEEEEEEEEETT---EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHHTCSTTCCCTTT----SCEEETTCCCCC
T ss_pred ceeEEeeEEEEECC---EEeEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCCccccc----eeEEEEcccccc
Confidence 35777899999953 569999999999999999999999999999999984 221 10011 1378999985 4
Q ss_pred Cc-cccHHHHHhcCCcccHHHHHHHHHHhcch-hHHhcCCCCCccccCCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCC
Q psy1503 163 IF-AATIRQNILFGLPYLRRRYADVIRVCALQ-DDFDSLPNGDFTVVGERGASLSGGQKARINLARAVYKNADIYLLDDP 240 (265)
Q Consensus 163 l~-~~ti~eni~~~~~~~~~~~~~~~~~~~l~-~~i~~l~~g~~t~vg~~g~~LSgGqrqRialARal~~~~~illLDEp 240 (265)
++ ..|+.||+.+......+++.++++..++. +..+ ....+||||||||++|||||+.+|+|+|||||
T Consensus 507 ~~~~ltv~e~l~~~~~~~~~~v~~~L~~lgL~~~~~~-----------~~~~~LSGGqkQRvaLArAL~~~P~lLLLDEP 575 (986)
T 2iw3_A 507 THSDTSVLDFVFESGVGTKEAIKDKLIEFGFTDEMIA-----------MPISALSGGWKMKLALARAVLRNADILLLDEP 575 (986)
T ss_dssp CCTTSBHHHHHHTTCSSCHHHHHHHHHHTTCCHHHHH-----------SBGGGCCHHHHHHHHHHHHHHTTCSEEEEEST
T ss_pred cccCCcHHHHHHHhhcCHHHHHHHHHHHcCCChhhhc-----------CCcccCCHHHHHHHHHHHHHhcCCCEEEEECC
Confidence 44 46999999862110145566777777773 3333 23468999999999999999999999999999
Q ss_pred CCCcCHHHHHHHHHH
Q psy1503 241 LSAVDMHVGKHLFED 255 (265)
Q Consensus 241 ~s~LD~~~~~~i~~~ 255 (265)
|++||+.+...+++.
T Consensus 576 Ts~LD~~~~~~l~~~ 590 (986)
T 2iw3_A 576 TNHLDTVNVAWLVNY 590 (986)
T ss_dssp TTTCCHHHHHHHHHH
T ss_pred ccCCCHHHHHHHHHH
Confidence 999999999888653
No 56
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=99.96 E-value=6.4e-29 Score=242.95 Aligned_cols=154 Identities=21% Similarity=0.344 Sum_probs=112.7
Q ss_pred eEEEEeCCCCCCcceeeceEEEcCCcEEEEEcCCCChHHHHHHHHhcCcCCCccEEE-----------EcCe--------
Q psy1503 93 NVTAQWSLQNADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVS-----------LGGT-------- 153 (265)
Q Consensus 93 ~~~~~~~~~~~~~~l~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~-----------~~g~-------- 153 (265)
|++++|+.. ...|++++ .+++|++++|+||||||||||+++|+|+++|++|+|. +.|.
T Consensus 82 ~~~~~Y~~~--~~~l~~l~-~~~~Gei~~LvGpNGaGKSTLLkiL~Gll~P~~G~i~~~~~~~~~~~~~~g~~~~~~~~~ 158 (608)
T 3j16_B 82 HVTHRYSAN--SFKLHRLP-TPRPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRFDDPPEWQEIIKYFRGSELQNYFTK 158 (608)
T ss_dssp TEEEECSTT--SCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSCCCTTTTCCSSCHHHHHHHTTTSTHHHHHHH
T ss_pred CeEEEECCC--ceeecCCC-CCCCCCEEEEECCCCChHHHHHHHHhcCCCCCCceEecccchhhhhheecChhhhhhhhH
Confidence 458888642 45677777 6899999999999999999999999999999999982 2231
Q ss_pred -------EEEEecCCCCcc-------ccHHHHHhcCCcccHHHHHHHHHHhcchhHHhcCCCCCccccCCCCCCCCHHHH
Q psy1503 154 -------VSYASQEPWIFA-------ATIRQNILFGLPYLRRRYADVIRVCALQDDFDSLPNGDFTVVGERGASLSGGQK 219 (265)
Q Consensus 154 -------i~~v~Q~~~l~~-------~ti~eni~~~~~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~vg~~g~~LSgGqr 219 (265)
..+.+|....++ .++.+++........++..++++..++....+ ....+||||||
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~~~~l~~~gl~~~~~-----------~~~~~LSgGe~ 227 (608)
T 3j16_B 159 MLEDDIKAIIKPQYVDNIPRAIKGPVQKVGELLKLRMEKSPEDVKRYIKILQLENVLK-----------RDIEKLSGGEL 227 (608)
T ss_dssp HHHTSCCCEEECCCTTTHHHHCSSSSSHHHHHHHHHCCSCHHHHHHHHHHHTCTGGGG-----------SCTTTCCHHHH
T ss_pred HHHHhhhhhhchhhhhhhhhhhcchhhHHHHHHhhhhhhHHHHHHHHHHHcCCcchhC-----------CChHHCCHHHH
Confidence 123333221110 14555554433333456667777777755443 34468999999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHHh
Q psy1503 220 ARINLARAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGCL 261 (265)
Q Consensus 220 qRialARal~~~~~illLDEp~s~LD~~~~~~i~~~~i~~~l 261 (265)
||++|||||+.+|++||||||||+||+.+...+++ .+..+.
T Consensus 228 Qrv~iAraL~~~p~llllDEPts~LD~~~~~~l~~-~l~~l~ 268 (608)
T 3j16_B 228 QRFAIGMSCVQEADVYMFDEPSSYLDVKQRLNAAQ-IIRSLL 268 (608)
T ss_dssp HHHHHHHHHHSCCSEEEEECTTTTCCHHHHHHHHH-HHHGGG
T ss_pred HHHHHHHHHHhCCCEEEEECcccCCCHHHHHHHHH-HHHHHH
Confidence 99999999999999999999999999999988755 444443
No 57
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=99.96 E-value=1.4e-29 Score=244.68 Aligned_cols=150 Identities=20% Similarity=0.337 Sum_probs=111.9
Q ss_pred eEEEEeCCCCCCcceeeceEEE-cCCcEEEEEcCCCChHHHHHHHHhcCcCCCccEE-----------EEcCe-------
Q psy1503 93 NVTAQWSLQNADLTLNAVSITF-KPKQLACIIGAIGAGKTSLLHIILNELRISSGKV-----------SLGGT------- 153 (265)
Q Consensus 93 ~~~~~~~~~~~~~~l~~isl~i-~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i-----------~~~g~------- 153 (265)
+.+++|+.+ ...|. .+.+ ++|+++||+||||||||||+++|+|+++|++|+| .++|.
T Consensus 4 ~~~~~~~~~--~f~l~--~l~~~~~Gei~gLiGpNGaGKSTLlkiL~Gl~~p~~G~i~~~~~~~~~~~~~~g~~i~~~~~ 79 (538)
T 3ozx_A 4 EVIHRYKVN--GFKLF--GLPTPKNNTILGVLGKNGVGKTTVLKILAGEIIPNFGDPNSKVGKDEVLKRFRGKEIYNYFK 79 (538)
T ss_dssp CEEEESSTT--SCEEE--CCCCCCTTEEEEEECCTTSSHHHHHHHHTTSSCCCTTCTTSCCCHHHHHHHHTTSTTHHHHH
T ss_pred CCceecCCC--ceeec--CCCCCCCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCccccccchhhHHhhcCCeeHHHHHH
Confidence 467889753 23344 4444 5999999999999999999999999999999998 34441
Q ss_pred --------EEE----EecCCCCccccHHHHHhcCCcccHHHHHHHHHHhcchhHHhcCCCCCccccCCCCCCCCHHHHHH
Q psy1503 154 --------VSY----ASQEPWIFAATIRQNILFGLPYLRRRYADVIRVCALQDDFDSLPNGDFTVVGERGASLSGGQKAR 221 (265)
Q Consensus 154 --------i~~----v~Q~~~l~~~ti~eni~~~~~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~vg~~g~~LSgGqrqR 221 (265)
+.. +.|.+.++.+++++++.... ..++..++++.+++....+ ....+||||||||
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~~--~~~~~~~~l~~l~l~~~~~-----------~~~~~LSgGe~Qr 146 (538)
T 3ozx_A 80 ELYSNELKIVHKIQYVEYASKFLKGTVNEILTKID--ERGKKDEVKELLNMTNLWN-----------KDANILSGGGLQR 146 (538)
T ss_dssp HHHTTCCCEEEECSCTTGGGTTCCSBHHHHHHHHC--CSSCHHHHHHHTTCGGGTT-----------SBGGGCCHHHHHH
T ss_pred HHhhcccchhhccchhhhhhhhccCcHHHHhhcch--hHHHHHHHHHHcCCchhhc-----------CChhhCCHHHHHH
Confidence 333 33445566678888775322 1234456677776654322 3456899999999
Q ss_pred HHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHH
Q psy1503 222 INLARAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGC 260 (265)
Q Consensus 222 ialARal~~~~~illLDEp~s~LD~~~~~~i~~~~i~~~ 260 (265)
++|||||+.+|+|||||||||+||+.+...+++ .+..+
T Consensus 147 v~iA~aL~~~p~illlDEPts~LD~~~~~~l~~-~l~~l 184 (538)
T 3ozx_A 147 LLVAASLLREADVYIFDQPSSYLDVRERMNMAK-AIREL 184 (538)
T ss_dssp HHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHH-HHHHH
T ss_pred HHHHHHHHcCCCEEEEECCcccCCHHHHHHHHH-HHHHH
Confidence 999999999999999999999999999988865 44544
No 58
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=99.95 E-value=2.6e-29 Score=248.50 Aligned_cols=152 Identities=16% Similarity=0.242 Sum_probs=89.9
Q ss_pred CcceeeceEEEcCCcEEEEEcCCCChHHHHH---------------------HHHhcCcCCCcc-------EEEEcCe--
Q psy1503 104 DLTLNAVSITFKPKQLACIIGAIGAGKTSLL---------------------HIILNELRISSG-------KVSLGGT-- 153 (265)
Q Consensus 104 ~~~l~~isl~i~~G~~~~ivG~~GsGKSTLl---------------------~~l~g~~~~~~G-------~i~~~g~-- 153 (265)
..+|+||||+|++|++++|+||||||||||+ +++.|+..|+.| .|.+++.
T Consensus 31 ~~~L~~vsl~i~~Ge~~~liGpNGaGKSTLl~~~~~~~~~~~~~~~l~~~~~~~l~~l~~~~~~~i~~~~~~i~~~~~~~ 110 (670)
T 3ux8_A 31 AHNLKNIDVEIPRGKLVVLTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMEKPDVDAIEGLSPAISIDQKTT 110 (670)
T ss_dssp STTCCSEEEEEETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHTC--------------CCCSEEESCCCEEEESSCC-
T ss_pred ccceeccEEEECCCCEEEEECCCCCCHHHHhcccccccccccccccchhhhhhhhcccccCCccceeccccceEecCchh
Confidence 4589999999999999999999999999998 888999999844 4445442
Q ss_pred -------EEEEecCCCC-------------------c-cccHHHHHhcCCccc--H--HH-----HHHHHHHhcchhHHh
Q psy1503 154 -------VSYASQEPWI-------------------F-AATIRQNILFGLPYL--R--RR-----YADVIRVCALQDDFD 197 (265)
Q Consensus 154 -------i~~v~Q~~~l-------------------~-~~ti~eni~~~~~~~--~--~~-----~~~~~~~~~l~~~i~ 197 (265)
+++++|.+.+ + ..|+.||+.+..... . .+ ..++.+... .+.
T Consensus 111 ~~~~~~~ig~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~l~ 187 (670)
T 3ux8_A 111 SRNPRSTVGTVTEIYDYLRLLFARIGRLVGGKHIGEVTAMSVTEALAFFDGLELTEKEAQIARLILREIRDRLG---FLQ 187 (670)
T ss_dssp ----CCBHHHHTTCC-------------------------CC--------------------------CHHHHH---HHH
T ss_pred hccchhceeeeechhhhHHHHHhhhcccccccccccccCCcHHHHHHHhhccccchhhhHHHHHHHHHHHHHHH---HHH
Confidence 4455554322 1 358999988742111 0 00 011111111 122
Q ss_pred cCCCCCccccCCCCCCCCHHHHHHHHHHHHHccCCC--EEEEeCCCCCcCHHHHHHHHHHHHHHH
Q psy1503 198 SLPNGDFTVVGERGASLSGGQKARINLARAVYKNAD--IYLLDDPLSAVDMHVGKHLFEDCISGC 260 (265)
Q Consensus 198 ~l~~g~~t~vg~~g~~LSgGqrqRialARal~~~~~--illLDEp~s~LD~~~~~~i~~~~i~~~ 260 (265)
.+..++ ........+|||||||||+|||||+.+|+ +||||||||+||+.....+++ .+..+
T Consensus 188 ~~gL~~-~~~~~~~~~LSGGe~QRv~iArAL~~~p~~~lLlLDEPtsgLD~~~~~~l~~-~l~~l 250 (670)
T 3ux8_A 188 NVGLDY-LTLSRSAGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIA-TLKSM 250 (670)
T ss_dssp HTTCTT-CCTTCBGGGSCHHHHHHHHHHHHHHTCCCSCEEEEECTTTTCCGGGHHHHHH-HHHHH
T ss_pred HcCCch-hhhcCCcccCCHHHHHHHHHHHHHhhCCCCCEEEEECCccCCCHHHHHHHHH-HHHHH
Confidence 221111 01245677999999999999999999998 999999999999999998865 44443
No 59
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=99.94 E-value=1.8e-31 Score=240.95 Aligned_cols=157 Identities=16% Similarity=0.133 Sum_probs=122.7
Q ss_pred HHHHHHHHhcCCCCCCcCCCCCCCCCCcEEEEeEEEEeCCCCCCcceeeceEEEcCCcEEEEEcCCCChHHHHHHHHhcC
Q psy1503 61 TDRVLNFLLLGEHEPRKINSVHSNGKGHVSLDNVTAQWSLQNADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNE 140 (265)
Q Consensus 61 ~~ri~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~g~ 140 (265)
.+|+.+++..++...... .......+.|+++|++|+|+ .++|+++||+|++|++++|+||||||||||+++|+|+
T Consensus 75 ~~ri~~~l~~~~~~~~~~-~~~~~~~~~i~~~~vs~~y~----~~vL~~vsl~i~~Ge~vaIvGpsGsGKSTLl~lL~gl 149 (305)
T 2v9p_A 75 ALSMPAYIKARCKLATGE-GSWKSILTFFNYQNIELITF----INALKLWLKGIPKKNCLAFIGPPNTGKSMLCNSLIHF 149 (305)
T ss_dssp HSCHHHHHHHHHHHCCSS-CCTHHHHHHHHHTTCCHHHH----HHHHHHHHHTCTTCSEEEEECSSSSSHHHHHHHHHHH
T ss_pred HHHHHHHHhccccccCCC-CcccccCCeEEEEEEEEEcC----hhhhccceEEecCCCEEEEECCCCCcHHHHHHHHhhh
Confidence 388888887543111100 00001123588999999995 4689999999999999999999999999999999999
Q ss_pred cCCCccEEEEcCeEEEEecCCCCccccHHH-HHhcCCcccHHHHHHHHHHhcchhHHhc-CCCCCccccCCCCCCCCHHH
Q psy1503 141 LRISSGKVSLGGTVSYASQEPWIFAATIRQ-NILFGLPYLRRRYADVIRVCALQDDFDS-LPNGDFTVVGERGASLSGGQ 218 (265)
Q Consensus 141 ~~~~~G~i~~~g~i~~v~Q~~~l~~~ti~e-ni~~~~~~~~~~~~~~~~~~~l~~~i~~-l~~g~~t~vg~~g~~LSgGq 218 (265)
+ +|+| ++|++|++++|++|+++ ||.++....+ . +.+.++. +|.+++ |.+|||||
T Consensus 150 ~---~G~I-----~~~v~q~~~lf~~ti~~~ni~~~~~~~~-~---------~~~~i~~~L~~gld------g~~LSgGq 205 (305)
T 2v9p_A 150 L---GGSV-----LSFANHKSHFWLASLADTRAALVDDATH-A---------CWRYFDTYLRNALD------GYPVSIDR 205 (305)
T ss_dssp H---TCEE-----ECGGGTTSGGGGGGGTTCSCEEEEEECH-H---------HHHHHHHTTTGGGG------TCCEECCC
T ss_pred c---CceE-----EEEecCccccccccHHHHhhccCccccH-H---------HHHHHHHHhHccCC------ccCcCHHH
Confidence 9 8988 56899999999999998 9988643222 1 2234444 677665 67999999
Q ss_pred HHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHH
Q psy1503 219 KARINLARAVYKNADIYLLDDPLSAVDMHVGKHLF 253 (265)
Q Consensus 219 rqRialARal~~~~~illLDEp~s~LD~~~~~~i~ 253 (265)
||| |||++++|+||| ||+||+.++..|.
T Consensus 206 kQR---ARAll~~p~iLl----Ts~LD~~~~~~i~ 233 (305)
T 2v9p_A 206 KHK---AAVQIKAPPLLV----TSNIDVQAEDRYL 233 (305)
T ss_dssp SSC---CCCEECCCCEEE----EESSCSTTCGGGG
T ss_pred HHH---HHHHhCCCCEEE----ECCCCHHHHHHHH
Confidence 999 999999999999 9999999887764
No 60
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=99.93 E-value=2.6e-26 Score=227.08 Aligned_cols=53 Identities=25% Similarity=0.562 Sum_probs=45.8
Q ss_pred cCCCCCCCCHHHHHHHHHHHHHccCC---CEEEEeCCCCCcCHHHHHHHHHHHHHHH
Q psy1503 207 VGERGASLSGGQKARINLARAVYKNA---DIYLLDDPLSAVDMHVGKHLFEDCISGC 260 (265)
Q Consensus 207 vg~~g~~LSgGqrqRialARal~~~~---~illLDEp~s~LD~~~~~~i~~~~i~~~ 260 (265)
.+..+.+|||||||||+|||||+++| +|+||||||++||+.+...|++ .+..+
T Consensus 537 ~~~~~~~LSgG~~qrv~iAraL~~~p~~p~llllDEPt~~LD~~~~~~i~~-~l~~l 592 (670)
T 3ux8_A 537 LGQPATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLD-VLHRL 592 (670)
T ss_dssp TTCCGGGCCHHHHHHHHHHHHHHSCCCSCEEEEEESTTTTCCHHHHHHHHH-HHHHH
T ss_pred ccCCchhCCHHHHHHHHHHHHHhhCCCCCcEEEEeCCCCCCCHHHHHHHHH-HHHHH
Confidence 45677899999999999999999887 5999999999999999999866 44444
No 61
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=99.92 E-value=1.3e-28 Score=233.73 Aligned_cols=130 Identities=11% Similarity=0.062 Sum_probs=100.6
Q ss_pred eceEEEcCCcEEEEEcCCCChHHHHHHHHhcCcCCCcc-E-EEEcC----eEEEEecCCCCcc----ccHHHHHhcCCcc
Q psy1503 109 AVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSG-K-VSLGG----TVSYASQEPWIFA----ATIRQNILFGLPY 178 (265)
Q Consensus 109 ~isl~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G-~-i~~~g----~i~~v~Q~~~l~~----~ti~eni~~~~~~ 178 (265)
++||++++|++++|+||||||||||+++|+|++.|++| + |.++| .++|+||++.+|+ .|++||+ |+...
T Consensus 130 ~vsl~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~~p~~G~~pI~vdg~~~~~i~~vpq~~~l~~~~~~~tv~eni-~~~~~ 208 (460)
T 2npi_A 130 KIRMSNFEGPRVVIVGGSQTGKTSLSRTLCSYALKFNAYQPLYINLDPQQPIFTVPGCISATPISDILDAQLPT-WGQSL 208 (460)
T ss_dssp HHHHHSSSCCCEEEEESTTSSHHHHHHHHHHTTHHHHCCCCEEEECCTTSCSSSCSSCCEEEECCSCCCTTCTT-CSCBC
T ss_pred cCceEeCCCCEEEEECCCCCCHHHHHHHHhCcccccCCceeEEEcCCccCCeeeeccchhhcccccccchhhhh-ccccc
Confidence 68999999999999999999999999999999999999 9 99987 4899999985443 4899999 76432
Q ss_pred cHHHHHHHHHHhcchhHHhcCCCCCccccCCCCCCCCHHHHHHHHHHHH--HccCCCE----EEEeC-CCCCcCHH
Q psy1503 179 LRRRYADVIRVCALQDDFDSLPNGDFTVVGERGASLSGGQKARINLARA--VYKNADI----YLLDD-PLSAVDMH 247 (265)
Q Consensus 179 ~~~~~~~~~~~~~l~~~i~~l~~g~~t~vg~~g~~LSgGqrqRialARa--l~~~~~i----llLDE-p~s~LD~~ 247 (265)
.... . ......+.+..+ |+..... ..+||||||||++|||| |+.+|++ +|||| ||++||+.
T Consensus 209 ~~~~-~---~~~~~~~ll~~~--gl~~~~~--~~~LSgGq~qrlalAra~rL~~~p~i~~sGLlLDEpPts~LD~~ 276 (460)
T 2npi_A 209 TSGA-T---LLHNKQPMVKNF--GLERINE--NKDLYLECISQLGQVVGQRLHLDPQVRRSGCIVDTPSISQLDEN 276 (460)
T ss_dssp BSSC-C---SSCCBCCEECCC--CSSSGGG--CHHHHHHHHHHHHHHHHHHHHHCHHHHHSCEEEECCCGGGSCSS
T ss_pred ccCc-c---hHHHHHHHHHHh--CCCcccc--hhhhhHHHHHHHHHHHHHHhccCcccCcceEEEeCCcccccChh
Confidence 1000 0 000111112221 2222222 67899999999999999 9999999 99999 99999998
No 62
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=99.91 E-value=3.8e-25 Score=206.02 Aligned_cols=46 Identities=22% Similarity=0.211 Sum_probs=41.6
Q ss_pred CCHHHHHHHHHHHHHccCC--CEEEEeCCCCCcCHHHHHHHHHHHHHHH
Q psy1503 214 LSGGQKARINLARAVYKNA--DIYLLDDPLSAVDMHVGKHLFEDCISGC 260 (265)
Q Consensus 214 LSgGqrqRialARal~~~~--~illLDEp~s~LD~~~~~~i~~~~i~~~ 260 (265)
||||||||++|||+|+.+| +++||||||++||+.+...+.+ .+..+
T Consensus 296 lSgGe~qrl~lA~~l~~~~~~~~LlLDEpt~~LD~~~~~~l~~-~L~~l 343 (415)
T 4aby_A 296 ASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAE-QLSRL 343 (415)
T ss_dssp SCHHHHHHHHHHHHHHHCCSSSEEEESSTTTTCCHHHHHHHHH-HHHHH
T ss_pred cCHhHHHHHHHHHHHHhCCCCCEEEEECCCCCCCHHHHHHHHH-HHHHH
Confidence 7999999999999999999 9999999999999999999866 34443
No 63
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=99.91 E-value=5.8e-24 Score=215.46 Aligned_cols=55 Identities=29% Similarity=0.552 Sum_probs=47.6
Q ss_pred ccCCCCCCCCHHHHHHHHHHHHHccCC---CEEEEeCCCCCcCHHHHHHHHHHHHHHHh
Q psy1503 206 VVGERGASLSGGQKARINLARAVYKNA---DIYLLDDPLSAVDMHVGKHLFEDCISGCL 261 (265)
Q Consensus 206 ~vg~~g~~LSgGqrqRialARal~~~~---~illLDEp~s~LD~~~~~~i~~~~i~~~l 261 (265)
.+++.+.+|||||||||+|||||+++| +||||||||+|||+.+.+.+++ .+..+.
T Consensus 798 ~lgq~~~~LSGGErQRV~LAraL~~~p~~p~LLILDEPTsGLD~~~~~~L~~-lL~~L~ 855 (916)
T 3pih_A 798 KLGQPATTLSGGEAQRIKLASELRKRDTGRTLYILDEPTVGLHFEDVRKLVE-VLHRLV 855 (916)
T ss_dssp BTTCCSTTCCHHHHHHHHHHHHHTSCCCSSEEEEEESTTTTCCHHHHHHHHH-HHHHHH
T ss_pred hccCCccCCCHHHHHHHHHHHHHhhCCCCCCEEEEECCCCCCCHHHHHHHHH-HHHHHH
Confidence 367888999999999999999999875 7999999999999999999865 455543
No 64
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=99.90 E-value=6.7e-27 Score=200.33 Aligned_cols=118 Identities=15% Similarity=0.200 Sum_probs=77.5
Q ss_pred CcceeeceEEEcCCcEEEEEcCCCChHHHHHHHHhcCcCCCccEEEEc----------CeEEEEecCCCCccccHHHHH-
Q psy1503 104 DLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSLG----------GTVSYASQEPWIFAATIRQNI- 172 (265)
Q Consensus 104 ~~~l~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~----------g~i~~v~Q~~~l~~~ti~eni- 172 (265)
..+|+|+ ++|++++|+||||||||||+++|+|+ +|++|+|... ..++|+||++ +||+
T Consensus 13 ~~~l~~i----~~Ge~~~liG~nGsGKSTLl~~l~Gl-~p~~G~I~~~~~~~~~~~~~~~ig~v~q~~-------~enl~ 80 (208)
T 3b85_A 13 KHYVDAI----DTNTIVFGLGPAGSGKTYLAMAKAVQ-ALQSKQVSRIILTRPAVEAGEKLGFLPGTL-------NEKID 80 (208)
T ss_dssp HHHHHHH----HHCSEEEEECCTTSSTTHHHHHHHHH-HHHTTSCSEEEEEECSCCTTCCCCSSCC-------------C
T ss_pred HHHHHhc----cCCCEEEEECCCCCCHHHHHHHHhcC-CCcCCeeeeEEecCCchhhhcceEEecCCH-------HHHHH
Confidence 3578885 89999999999999999999999999 9999998431 1378888876 6666
Q ss_pred hcCCcccHHHHHHHHHHhcchhHHhcCCCCCccccCCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHH
Q psy1503 173 LFGLPYLRRRYADVIRVCALQDDFDSLPNGDFTVVGERGASLSGGQKARINLARAVYKNADIYLLDDPLSAVDMHVGKHL 252 (265)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~vg~~g~~LSgGqrqRialARal~~~~~illLDEp~s~LD~~~~~~i 252 (265)
.++... ...+........+.+.++ . .| |||||++|||||+.+|+++||||||++ +...+
T Consensus 81 ~~~~~~-~~~~~~~~~~~~~~~~l~-----------~---gl--Gq~qrv~lAraL~~~p~lllLDEPts~----~~~~l 139 (208)
T 3b85_A 81 PYLRPL-HDALRDMVEPEVIPKLME-----------A---GI--VEVAPLAYMRGRTLNDAFVILDEAQNT----TPAQM 139 (208)
T ss_dssp TTTHHH-HHHHTTTSCTTHHHHHHH-----------T---TS--EEEEEGGGGTTCCBCSEEEEECSGGGC----CHHHH
T ss_pred HHHHHH-HHHHHHhccHHHHHHHHH-----------h---CC--chHHHHHHHHHHhcCCCEEEEeCCccc----cHHHH
Confidence 342110 000000000000111111 1 12 999999999999999999999999999 55555
Q ss_pred HH
Q psy1503 253 FE 254 (265)
Q Consensus 253 ~~ 254 (265)
++
T Consensus 140 ~~ 141 (208)
T 3b85_A 140 KM 141 (208)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 65
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=99.90 E-value=1e-23 Score=212.13 Aligned_cols=53 Identities=26% Similarity=0.481 Sum_probs=46.6
Q ss_pred cCCCCCCCCHHHHHHHHHHHHHccC---CCEEEEeCCCCCcCHHHHHHHHHHHHHHH
Q psy1503 207 VGERGASLSGGQKARINLARAVYKN---ADIYLLDDPLSAVDMHVGKHLFEDCISGC 260 (265)
Q Consensus 207 vg~~g~~LSgGqrqRialARal~~~---~~illLDEp~s~LD~~~~~~i~~~~i~~~ 260 (265)
.+....+|||||||||+|||+|+++ |+||||||||++||+...+.+++ .+..+
T Consensus 724 l~~~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~-lL~~L 779 (842)
T 2vf7_A 724 LGQPATELSGGEAQRIKLATELRRSGRGGTVYVLDEPTTGLHPADVERLQR-QLVKL 779 (842)
T ss_dssp TTCCGGGCCHHHHHHHHHHHTTSSCCSSCEEEEEECTTTTCCHHHHHHHHH-HHHHH
T ss_pred ccCCcccCCHHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHH-HHHHH
Confidence 5677889999999999999999996 79999999999999999998865 44444
No 66
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=99.90 E-value=8.3e-27 Score=211.26 Aligned_cols=139 Identities=14% Similarity=0.139 Sum_probs=109.1
Q ss_pred CCcEEEEeEEEEeCCCCCCcceeeceEE-----------------------EcCCcEEEEEcCCCChHHHHHHHHhcCcC
Q psy1503 86 KGHVSLDNVTAQWSLQNADLTLNAVSIT-----------------------FKPKQLACIIGAIGAGKTSLLHIILNELR 142 (265)
Q Consensus 86 ~~~i~~~~~~~~~~~~~~~~~l~~isl~-----------------------i~~G~~~~ivG~~GsGKSTLl~~l~g~~~ 142 (265)
...|++++|++.|. ++++++++. +++|++++|+||||||||||+++|.|+++
T Consensus 41 ~~~i~~~~v~~~y~-----p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~ivgI~G~sGsGKSTL~~~L~gll~ 115 (312)
T 3aez_A 41 GEQIDLLEVEEVYL-----PLARLIHLQVAARQRLFAATAEFLGEPQQNPDRPVPFIIGVAGSVAVGKSTTARVLQALLA 115 (312)
T ss_dssp TCCCCHHHHHHTHH-----HHHHHHHHHHHHHHHHHHHHHHHTTCCCCCSSSCCCEEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCeEEeeehhhhhh-----hHHHHHHHHHhhhhHHHHHHHHhhcccccccCCCCCEEEEEECCCCchHHHHHHHHHhhcc
Confidence 34689999999993 466777764 89999999999999999999999999999
Q ss_pred CCccEEEEcCeEEEEecCCCCccccHHHHHhcCC----c--ccHHHHHHHHHHhcchhHHhcCCCCCccccCCCCCCCCH
Q psy1503 143 ISSGKVSLGGTVSYASQEPWIFAATIRQNILFGL----P--YLRRRYADVIRVCALQDDFDSLPNGDFTVVGERGASLSG 216 (265)
Q Consensus 143 ~~~G~i~~~g~i~~v~Q~~~l~~~ti~eni~~~~----~--~~~~~~~~~~~~~~l~~~i~~l~~g~~t~vg~~g~~LSg 216 (265)
|+.|. ..+++++|++.+++.|++||+.+.. + .+.+.+.+.++..+ .+.. ......|||
T Consensus 116 ~~~G~----~~v~~v~qd~~~~~~t~~e~~~~~~~~g~~~~~d~~~~~~~L~~l~---------~~~~---~~~~~~lS~ 179 (312)
T 3aez_A 116 RWDHH----PRVDLVTTDGFLYPNAELQRRNLMHRKGFPESYNRRALMRFVTSVK---------SGSD---YACAPVYSH 179 (312)
T ss_dssp TSTTC----CCEEEEEGGGGBCCHHHHHHTTCTTCTTSGGGBCHHHHHHHHHHHH---------TTCS---CEEEEEEET
T ss_pred ccCCC----CeEEEEecCccCCcccHHHHHHHHHhcCCChHHHHHHHHHHHHHhC---------CCcc---cCCcccCCh
Confidence 98775 4589999999998889999987532 1 12233333333322 1221 112358999
Q ss_pred HHHHHHHHHHHHccCCCEEEEeCCCCCcC
Q psy1503 217 GQKARINLARAVYKNADIYLLDDPLSAVD 245 (265)
Q Consensus 217 GqrqRialARal~~~~~illLDEp~s~LD 245 (265)
||+||+++|||++.+|+|+|||||++.+|
T Consensus 180 G~~qRv~~a~al~~~p~ilIlDep~~~~d 208 (312)
T 3aez_A 180 LHYDIIPGAEQVVRHPDILILEGLNVLQT 208 (312)
T ss_dssp TTTEEEEEEEEEECSCSEEEEECTTTTCC
T ss_pred hhhhhhhhHHHhccCCCEEEECCccccCC
Confidence 99999999999999999999999999975
No 67
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=99.89 E-value=8.3e-25 Score=181.04 Aligned_cols=115 Identities=15% Similarity=0.223 Sum_probs=75.9
Q ss_pred eceEEEcCCcEEEEEcCCCChHHHHHHHHhcCcCCCccEEEEcC--eEEEEecCCC--CccccHHHHHhcCCcccHHHHH
Q psy1503 109 AVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSLGG--TVSYASQEPW--IFAATIRQNILFGLPYLRRRYA 184 (265)
Q Consensus 109 ~isl~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g--~i~~v~Q~~~--l~~~ti~eni~~~~~~~~~~~~ 184 (265)
|+||++++|++++|+||||||||||++++.+-... +++ ..++++|++. .+.+++.+++..
T Consensus 1 ~vsl~i~~gei~~l~G~nGsGKSTl~~~~~~~~~~------~~~d~~~g~~~~~~~~~~~~~~~~~~~~~---------- 64 (171)
T 4gp7_A 1 SMKLTIPELSLVVLIGSSGSGKSTFAKKHFKPTEV------ISSDFCRGLMSDDENDQTVTGAAFDVLHY---------- 64 (171)
T ss_dssp CEEEEEESSEEEEEECCTTSCHHHHHHHHSCGGGE------EEHHHHHHHHCSSTTCGGGHHHHHHHHHH----------
T ss_pred CccccCCCCEEEEEECCCCCCHHHHHHHHccCCeE------EccHHHHHHhcCcccchhhHHHHHHHHHH----------
Confidence 68999999999999999999999999986532221 211 1245555542 112222222110
Q ss_pred HHHHHhcchhHHhcCCCCCccccCCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHH
Q psy1503 185 DVIRVCALQDDFDSLPNGDFTVVGERGASLSGGQKARINLARAVYKNADIYLLDDPLSAVDMHVG 249 (265)
Q Consensus 185 ~~~~~~~l~~~i~~l~~g~~t~vg~~g~~LSgGqrqRialARal~~~~~illLDEp~s~LD~~~~ 249 (265)
... ..+..|+.+.+. .....|||||||++||||+..+|++++|||||++||+.++
T Consensus 65 -~~~--------~~~~~g~~~~~~-~~~~~s~g~~qrv~iAral~~~p~~lllDEPt~~Ld~~~~ 119 (171)
T 4gp7_A 65 -IVS--------KRLQLGKLTVVD-ATNVQESARKPLIEMAKDYHCFPVAVVFNLPEKVCQERNK 119 (171)
T ss_dssp -HHH--------HHHHTTCCEEEE-SCCCSHHHHHHHHHHHHHTTCEEEEEEECCCHHHHHHHHH
T ss_pred -HHH--------HHHhCCCeEEEE-CCCCCHHHHHHHHHHHHHcCCcEEEEEEeCCHHHHHHHHh
Confidence 000 001123333333 2345699999999999999999999999999999999954
No 68
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=99.89 E-value=2.4e-26 Score=215.26 Aligned_cols=137 Identities=14% Similarity=0.145 Sum_probs=111.5
Q ss_pred CcceeeceEEEcCCc--------------------EEEEEcCCCChHHHHHHHHhcCcCCCccEEEEcCe----EEEEec
Q psy1503 104 DLTLNAVSITFKPKQ--------------------LACIIGAIGAGKTSLLHIILNELRISSGKVSLGGT----VSYASQ 159 (265)
Q Consensus 104 ~~~l~~isl~i~~G~--------------------~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g~----i~~v~Q 159 (265)
..+|++|||++++|+ +++|+||||||||||+|+|+|+++|++|+|.++|. .++++|
T Consensus 36 ~~~l~~is~~i~~Ge~~~~~~~i~~~L~~~~~~~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t~~~~v~q 115 (413)
T 1tq4_A 36 QEILNLIELRMRAGNIQLTNSAISDALKEIDSSVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYK 115 (413)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHCCEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCEEEE
T ss_pred HHHhhhccceecCCCCcccchhhhhhhhhcccCCeEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecceeEEecc
Confidence 458999999999999 99999999999999999999999999999998873 379999
Q ss_pred CCCCccccHHHHHhcCCcccHHHHHHHHHHhcchhHHhcCCCCCccccCCCCCCCCHH--HHHHHHHHHHHcc-------
Q psy1503 160 EPWIFAATIRQNILFGLPYLRRRYADVIRVCALQDDFDSLPNGDFTVVGERGASLSGG--QKARINLARAVYK------- 230 (265)
Q Consensus 160 ~~~l~~~ti~eni~~~~~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~vg~~g~~LSgG--qrqRialARal~~------- 230 (265)
++...+.|+.||+.++.. ..+..+.++..++.+. +.. .. |||| ||||++|||||.+
T Consensus 116 ~~~~~~ltv~D~~g~~~~--~~~~~~~L~~~~L~~~--------~~~----~~-lS~G~~~kqrv~la~aL~~~~~p~~l 180 (413)
T 1tq4_A 116 HPNIPNVVFWDLPGIGST--NFPPDTYLEKMKFYEY--------DFF----II-ISATRFKKNDIDIAKAISMMKKEFYF 180 (413)
T ss_dssp CSSCTTEEEEECCCGGGS--SCCHHHHHHHTTGGGC--------SEE----EE-EESSCCCHHHHHHHHHHHHTTCEEEE
T ss_pred ccccCCeeehHhhcccch--HHHHHHHHHHcCCCcc--------CCe----EE-eCCCCccHHHHHHHHHHHhcCCCeEE
Confidence 975445699998876532 2234556666554321 111 12 8999 9999999999999
Q ss_pred ---CCCEEEEeCCCCCcCHHHHHHHHHH
Q psy1503 231 ---NADIYLLDDPLSAVDMHVGKHLFED 255 (265)
Q Consensus 231 ---~~~illLDEp~s~LD~~~~~~i~~~ 255 (265)
+||+++|||||++||+..+.++++.
T Consensus 181 V~tkpdlllLDEPtsgLD~~~~~~l~~~ 208 (413)
T 1tq4_A 181 VRTKVDSDITNEADGEPQTFDKEKVLQD 208 (413)
T ss_dssp EECCHHHHHHHHHTTCCTTCCHHHHHHH
T ss_pred EEecCcccccCcccccCCHHHHHHHHHH
Confidence 9999999999999999998887653
No 69
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=99.89 E-value=4.8e-23 Score=208.89 Aligned_cols=54 Identities=30% Similarity=0.617 Sum_probs=46.7
Q ss_pred ccCCCCCCCCHHHHHHHHHHHHHccCC---CEEEEeCCCCCcCHHHHHHHHHHHHHHH
Q psy1503 206 VVGERGASLSGGQKARINLARAVYKNA---DIYLLDDPLSAVDMHVGKHLFEDCISGC 260 (265)
Q Consensus 206 ~vg~~g~~LSgGqrqRialARal~~~~---~illLDEp~s~LD~~~~~~i~~~~i~~~ 260 (265)
..+....+|||||||||+|||+|+++| +||||||||++||+.+...+++ .+..+
T Consensus 856 ~l~~~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~-lL~~L 912 (993)
T 2ygr_A 856 RLGQPAPTLSGGEAQRVKLASELQKRSTGRTVYILDEPTTGLHFDDIRKLLN-VINGL 912 (993)
T ss_dssp BTTCCGGGSCHHHHHHHHHHHHHSSCCCSSEEEEEESTTTTCCHHHHHHHHH-HHHHH
T ss_pred cccCccccCCHHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHH-HHHHH
Confidence 356778899999999999999999865 9999999999999999998865 44444
No 70
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=99.89 E-value=3.2e-23 Score=209.59 Aligned_cols=54 Identities=24% Similarity=0.541 Sum_probs=46.7
Q ss_pred ccCCCCCCCCHHHHHHHHHHHHHccCC---CEEEEeCCCCCcCHHHHHHHHHHHHHHH
Q psy1503 206 VVGERGASLSGGQKARINLARAVYKNA---DIYLLDDPLSAVDMHVGKHLFEDCISGC 260 (265)
Q Consensus 206 ~vg~~g~~LSgGqrqRialARal~~~~---~illLDEp~s~LD~~~~~~i~~~~i~~~ 260 (265)
..+....+|||||||||+|||+|+++| +||||||||+|||+.+...+++ .+..+
T Consensus 838 ~l~~~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~-lL~~L 894 (972)
T 2r6f_A 838 KLGQPATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLD-VLHRL 894 (972)
T ss_dssp BTTCCGGGCCHHHHHHHHHHHHHSSCCCSCEEEEEECTTTTCCHHHHHHHHH-HHHHH
T ss_pred cccCchhhCCHHHHHHHHHHHHHhcCCCCCCEEEEECCCCCCCHHHHHHHHH-HHHHH
Confidence 456778899999999999999999865 9999999999999999998866 44444
No 71
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=99.88 E-value=6.1e-26 Score=195.12 Aligned_cols=132 Identities=14% Similarity=0.148 Sum_probs=88.1
Q ss_pred ceeeceEEEcCCcEEEEEcCCCChHHHHHHHHhcCcCCCccEEEEc-------------CeEEEEecCCCCccccH--HH
Q psy1503 106 TLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSLG-------------GTVSYASQEPWIFAATI--RQ 170 (265)
Q Consensus 106 ~l~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~-------------g~i~~v~Q~~~l~~~ti--~e 170 (265)
.|+||||+|++|++++|+||||||||||+++|+|++ | |+|.++ ..++|++|++.+|+..+ .+
T Consensus 12 ~l~~isl~i~~G~~~~lvGpsGsGKSTLl~~L~g~~-p--G~i~~g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 88 (218)
T 1z6g_A 12 SGLVPRGSMNNIYPLVICGPSGVGKGTLIKKLLNEF-P--NYFYFSVSCTTRKKREKEKEGVDYYFIDKTIFEDKLKNED 88 (218)
T ss_dssp ----------CCCCEEEECSTTSSHHHHHHHHHHHS-T--TTEEECCCEECSCCCSSCCBTTTBEECCHHHHHHHHHTTC
T ss_pred cccCCceecCCCCEEEEECCCCCCHHHHHHHHHhhC-C--CcEEEeecccCCCCCcccccCCeEEECCHHHHHHhhhccc
Confidence 599999999999999999999999999999999998 6 999872 12788999876664311 11
Q ss_pred HHhc---CC-c--ccHHHHHHHHHHhcchhHHhcCCCCCccccCCCCCCCCHHHHHHHHH-----HHHHccCCCEEEEeC
Q psy1503 171 NILF---GL-P--YLRRRYADVIRVCALQDDFDSLPNGDFTVVGERGASLSGGQKARINL-----ARAVYKNADIYLLDD 239 (265)
Q Consensus 171 ni~~---~~-~--~~~~~~~~~~~~~~l~~~i~~l~~g~~t~vg~~g~~LSgGqrqRial-----ARal~~~~~illLDE 239 (265)
++.+ .. . .....+.++++.... ..++ .+|||||+||++| ||+++.+|++++|||
T Consensus 89 ~l~~~~~~~~~~g~~~~~i~~~l~~~~~------------~il~---~~lsggq~qR~~i~~~~~~~~ll~~~~~~~Lde 153 (218)
T 1z6g_A 89 FLEYDNYANNFYGTLKSEYDKAKEQNKI------------CLFE---MNINGVKQLKKSTHIKNALYIFIKPPSTDVLLS 153 (218)
T ss_dssp EEEEEEETTEEEEEEHHHHHHHHHTTCE------------EEEE---ECHHHHHHHTTCSSCCSCEEEEEECSCHHHHHH
T ss_pred hhhhhhcccccCCCcHHHHHHHHhCCCc------------EEEE---ecHHHHHHHHHHhcCCCcEEEEEeCcCHHHHHH
Confidence 2211 11 0 112333444433211 1111 5799999999999 899999999999999
Q ss_pred CCCCcCHHHHHHHHHH
Q psy1503 240 PLSAVDMHVGKHLFED 255 (265)
Q Consensus 240 p~s~LD~~~~~~i~~~ 255 (265)
||+++|..++..|.+.
T Consensus 154 ~~~~~d~~~~~~i~~~ 169 (218)
T 1z6g_A 154 RLLTRNTENQEQIQKR 169 (218)
T ss_dssp HHHHTCCCCHHHHHHH
T ss_pred HHHhcCCCCHHHHHHH
Confidence 9999999888777543
No 72
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.88 E-value=9.2e-23 Score=184.95 Aligned_cols=151 Identities=22% Similarity=0.258 Sum_probs=96.9
Q ss_pred eeceEEEcCCcEEEEEcCCCChHHHHHHHHhcCc----------------------------------------------
Q psy1503 108 NAVSITFKPKQLACIIGAIGAGKTSLLHIILNEL---------------------------------------------- 141 (265)
Q Consensus 108 ~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~g~~---------------------------------------------- 141 (265)
+++++++.+| +++|+||||||||||+.+|..++
T Consensus 16 ~~~~l~~~~g-~~~i~G~NGsGKS~ll~ai~~llg~~~~~s~r~~~~~~li~~g~~~~~~~~~~~v~~~f~~~~~~~~i~ 94 (322)
T 1e69_A 16 RPSLIGFSDR-VTAIVGPNGSGKSNIIDAIKWVFGEQSKKELRASEKFDMIFAGSENLPPAGSAYVELVFEENGEEITVA 94 (322)
T ss_dssp SCEEEECCSS-EEEEECCTTTCSTHHHHHHHHTSCC----------CCTTBCCCBTTBCCCSEEEEEEEEESSSCEEEEE
T ss_pred CCeEEecCCC-cEEEECCCCCcHHHHHHHHHHHhCCCchhhcccccHHHhhccCccCCCCCceEEEEEEEEeCCeEEEEE
Confidence 3578888999 99999999999999999998432
Q ss_pred ----CCCccEEEEcCe-------------EEEEecCCCCc-cccHHHHHhcCCccc-------------HHHHHHHHHHh
Q psy1503 142 ----RISSGKVSLGGT-------------VSYASQEPWIF-AATIRQNILFGLPYL-------------RRRYADVIRVC 190 (265)
Q Consensus 142 ----~~~~G~i~~~g~-------------i~~v~Q~~~l~-~~ti~eni~~~~~~~-------------~~~~~~~~~~~ 190 (265)
.+.+|.+.++|. +++.+|+..++ .+++.+|+....... ...|.++.+..
T Consensus 95 r~~~~~~~~~~~ing~~~~~~~~~~~~~~~g~~~~~~~lv~qg~i~~~~~~~p~~rr~~ld~~~~~~~~~~~y~rv~e~~ 174 (322)
T 1e69_A 95 RELKRTGENTYYLNGSPVRLKDIRDRFAGTGLGVDFYSIVGQGQIDRIVNASPEELRLESSKHPTSLVPRGSYQRVNESF 174 (322)
T ss_dssp EEEETTSCEEEEETTEEECHHHHHHHTTTSSTTTTCCSEEEHHHHHHHHTC---------------------CHHHHHHH
T ss_pred EEEEcCCceEEEECCcCccHHHHHHHHHHcCCChhheeeEehhhHHHHHhccHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 233467788874 45556665555 578888876532100 01112222211
Q ss_pred c---------------ch-hHHhcCCCCCcccc------CCCCCCCCHHHHHHHHHHHHHc----cCCCEEEEeCCCCCc
Q psy1503 191 A---------------LQ-DDFDSLPNGDFTVV------GERGASLSGGQKARINLARAVY----KNADIYLLDDPLSAV 244 (265)
Q Consensus 191 ~---------------l~-~~i~~l~~g~~t~v------g~~g~~LSgGqrqRialARal~----~~~~illLDEp~s~L 244 (265)
. +. .....++.|+++.+ ......||||||||++|||||+ .+|+++||||||++|
T Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~~~~~lS~Gq~q~v~ia~~l~~~~~~~~~~lllDEp~~~L 254 (322)
T 1e69_A 175 NRFISLLFFGGEGRLNIVSEAKSILDAGFEISIRKPGRRDQKLSLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPL 254 (322)
T ss_dssp HHHHHHHHTSCEEEC--------------CCEEECTTSCCCBGGGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSC
T ss_pred HHHHHHhcCCceEEEEeeccccccccCCeEEEEecCccccCchhhCCHHHHHHHHHHHHHHHhccCCCCEEEEeCCCCCC
Confidence 0 00 00112333444322 2345789999999999999996 689999999999999
Q ss_pred CHHHHHHHHHHHHHHH
Q psy1503 245 DMHVGKHLFEDCISGC 260 (265)
Q Consensus 245 D~~~~~~i~~~~i~~~ 260 (265)
|+.....+++ .+..+
T Consensus 255 D~~~~~~l~~-~l~~~ 269 (322)
T 1e69_A 255 DDYNAERFKR-LLKEN 269 (322)
T ss_dssp CHHHHHHHHH-HHHHH
T ss_pred CHHHHHHHHH-HHHHh
Confidence 9999988865 44443
No 73
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=99.86 E-value=2.2e-23 Score=174.23 Aligned_cols=108 Identities=17% Similarity=0.205 Sum_probs=77.6
Q ss_pred EEEEEcCCCChHHHHHHHHhcCcCCC-ccEEE--E-----cCeEEEEecCCCCccccHHHHHhcCCcccHHHHHHHHHHh
Q psy1503 119 LACIIGAIGAGKTSLLHIILNELRIS-SGKVS--L-----GGTVSYASQEPWIFAATIRQNILFGLPYLRRRYADVIRVC 190 (265)
Q Consensus 119 ~~~ivG~~GsGKSTLl~~l~g~~~~~-~G~i~--~-----~g~i~~v~Q~~~l~~~ti~eni~~~~~~~~~~~~~~~~~~ 190 (265)
.++|+||||||||||+++|+|++... .|... . ...++|++|++ +..+|+ ++
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~i~~~g~~~~~~~~~~~~~~ig~~~~~~-----~~~~~~-~~--------------- 60 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLGKRAIGFWTEEVRDPETKKRTGFRIITT-----EGKKKI-FS--------------- 60 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHGGGEEEEEEEEEC------CCEEEEEET-----TCCEEE-EE---------------
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcCCCEEhhhhccccccceeEEEeecC-----cHHHHH-HH---------------
Confidence 68999999999999999999998522 23211 1 12478888865 222222 10
Q ss_pred cchhHHhcCCCCCccccCCCCCCCCHHHHHHHHHHHH-----HccCCCEEEEeC--CCCCcCHHHHHHHHH
Q psy1503 191 ALQDDFDSLPNGDFTVVGERGASLSGGQKARINLARA-----VYKNADIYLLDD--PLSAVDMHVGKHLFE 254 (265)
Q Consensus 191 ~l~~~i~~l~~g~~t~vg~~g~~LSgGqrqRialARa-----l~~~~~illLDE--p~s~LD~~~~~~i~~ 254 (265)
.+....+..++..+.+||||||||++|||| ++.+|+++|||| ||+++|+...+.+.+
T Consensus 61 -------~~~~~~~~~~~~~~~~lSgG~~qr~~la~aa~~~~l~~~p~llilDEigp~~~ld~~~~~~l~~ 124 (178)
T 1ye8_A 61 -------SKFFTSKKLVGSYGVNVQYFEELAIPILERAYREAKKDRRKVIIIDEIGKMELFSKKFRDLVRQ 124 (178)
T ss_dssp -------ETTCCCSSEETTEEECHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGGGCHHHHHHHHH
T ss_pred -------hhcCCccccccccccCcCHHHHHHHHHHhhccccccccCCCEEEEeCCCCcccCCHHHHHHHHH
Confidence 000001134677788999999999999996 999999999999 999999998877754
No 74
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=99.86 E-value=2.9e-24 Score=190.78 Aligned_cols=113 Identities=14% Similarity=0.094 Sum_probs=75.0
Q ss_pred EEEEEcCCCChHHHHHHHHhcCcCCCccEEEEcCe----------EEEEecCCCCcc-ccHHHHHhcCCcccH----HHH
Q psy1503 119 LACIIGAIGAGKTSLLHIILNELRISSGKVSLGGT----------VSYASQEPWIFA-ATIRQNILFGLPYLR----RRY 183 (265)
Q Consensus 119 ~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g~----------i~~v~Q~~~l~~-~ti~eni~~~~~~~~----~~~ 183 (265)
.++|+||||||||||+++|+|+..|++|+|.++|. ++|++|++.++. .|+.||+.|+..... +.+
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~~~~~~i 83 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPKTVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINNENCWEPI 83 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHC------------CCCCCSCCEEEESCC----CCEEEEECCCC--CCSBCTTCSHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCcceeeeeeEEEeecCCCcCCceEEechhhhhhcccHHHHHHH
Confidence 47999999999999999999999999999998763 999999998886 499999998864321 222
Q ss_pred HHHHHHhcchhHHhcCCCCCccccCCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHH
Q psy1503 184 ADVIRVCALQDDFDSLPNGDFTVVGERGASLSGGQKARINLARAVYKNADIYLLDDPLSAVDMHVG 249 (265)
Q Consensus 184 ~~~~~~~~l~~~i~~l~~g~~t~vg~~g~~LSgGqrqRialARal~~~~~illLDEp~s~LD~~~~ 249 (265)
.+.+. ......+ ...||||||||+++|||++. +++||||+++||+...
T Consensus 84 ~~~~~----~~~~~~~-----------~~~LS~G~~qrv~iaRal~~---lllldep~~gL~~lD~ 131 (270)
T 3sop_A 84 EKYIN----EQYEKFL-----------KEEVNIARKKRIPDTRVHCC---LYFISPTGHSLRPLDL 131 (270)
T ss_dssp HHHHH----HHHHHHH-----------HHHSCTTCCSSCCCCSCCEE---EEEECCCSSSCCHHHH
T ss_pred HHHHH----HHHHhhh-----------HHhcCcccchhhhhheeeee---eEEEecCCCcCCHHHH
Confidence 22222 1111221 23799999999999999876 9999999999998874
No 75
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=99.83 E-value=3.9e-23 Score=186.34 Aligned_cols=130 Identities=17% Similarity=0.171 Sum_probs=97.0
Q ss_pred eeeceEEEcCCcEEEEEcCCCChHHHHHHHHhcCcCCCccEEEEcCe-------------------EEEEecCCC-Ccc-
Q psy1503 107 LNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSLGGT-------------------VSYASQEPW-IFA- 165 (265)
Q Consensus 107 l~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g~-------------------i~~v~Q~~~-l~~- 165 (265)
+.++||++++|++++|+|||||||||+++.|+|+++|++|+|.+.|. ++|++|++. +++
T Consensus 90 ~~~l~~~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~g~V~l~g~d~~r~~a~~ql~~~~~~~~i~~v~q~~~~~~~~ 169 (302)
T 3b9q_A 90 KTELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAA 169 (302)
T ss_dssp CCSCCCCSSSCEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCC--CCCHH
T ss_pred ccccccccCCCcEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeecccchhHHHHHHHHHHhcCceEEEecCCccCHH
Confidence 35689999999999999999999999999999999999999998761 799999988 775
Q ss_pred ccHHHHHhcCCcccHHHHHHHHHHhcchhHHhcCCCCCccccCCCCCCCCHHHHHHHHHHHHHccCCC--EEEEeCCCCC
Q psy1503 166 ATIRQNILFGLPYLRRRYADVIRVCALQDDFDSLPNGDFTVVGERGASLSGGQKARINLARAVYKNAD--IYLLDDPLSA 243 (265)
Q Consensus 166 ~ti~eni~~~~~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~vg~~g~~LSgGqrqRialARal~~~~~--illLDEp~s~ 243 (265)
.|++||+.++.... .. ...++.. |..........+|| |||++||||+..+|+ +++|| ||++
T Consensus 170 ~~v~e~l~~~~~~~----------~d-~~lldt~--gl~~~~~~~~~eLS---kqr~~iaral~~~P~e~lLvLD-ptsg 232 (302)
T 3b9q_A 170 TVLSKAVKRGKEEG----------YD-VVLCDTS--GRLHTNYSLMEELI---ACKKAVGKIVSGAPNEILLVLD-GNTG 232 (302)
T ss_dssp HHHHHHHHHHHHTT----------CS-EEEECCC--CCSSCCHHHHHHHH---HHHHHHHTTSTTCCSEEEEEEE-GGGG
T ss_pred HHHHHHHHHHHHcC----------Cc-chHHhcC--CCCcchhHHHHHHH---HHHHHHHHhhccCCCeeEEEEe-CCCC
Confidence 59999987642100 00 0011111 11111112334688 999999999999999 99999 9999
Q ss_pred cCHHHHHHHH
Q psy1503 244 VDMHVGKHLF 253 (265)
Q Consensus 244 LD~~~~~~i~ 253 (265)
+|+.....-+
T Consensus 233 lD~~~~~~~~ 242 (302)
T 3b9q_A 233 LNMLPQAREF 242 (302)
T ss_dssp GGGHHHHHHH
T ss_pred cCHHHHHHHH
Confidence 9998765433
No 76
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=99.83 E-value=1.2e-20 Score=174.26 Aligned_cols=52 Identities=21% Similarity=0.390 Sum_probs=45.1
Q ss_pred CCCCCCCCHHHHHHHHHHHHHc------cCCCEEEEeCCCCCcCHHHHHHHHHHHHHHH
Q psy1503 208 GERGASLSGGQKARINLARAVY------KNADIYLLDDPLSAVDMHVGKHLFEDCISGC 260 (265)
Q Consensus 208 g~~g~~LSgGqrqRialARal~------~~~~illLDEp~s~LD~~~~~~i~~~~i~~~ 260 (265)
+....+||||||||++|||||+ .+|+++||||||++||+.+...+++ .+..+
T Consensus 274 ~~~~~~LSgGe~qr~~la~al~~~~~~~~~p~~lllDEpt~~LD~~~~~~~~~-~l~~l 331 (365)
T 3qf7_A 274 ERPARGLSGGERALISISLAMSLAEVASGRLDAFFIDEGFSSLDTENKEKIAS-VLKEL 331 (365)
T ss_dssp EEEGGGSCHHHHHHHHHHHHHHHHHHTTTTCCEEEEESCCTTSCHHHHHHHHH-HHHGG
T ss_pred CCCchhCCHHHHHHHHHHHHHHhhhcccCCCCEEEEeCCCccCCHHHHHHHHH-HHHHH
Confidence 3456789999999999999999 7999999999999999999998865 44443
No 77
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=99.82 E-value=2.6e-22 Score=184.81 Aligned_cols=130 Identities=17% Similarity=0.179 Sum_probs=98.7
Q ss_pred eeceEEEcCCcEEEEEcCCCChHHHHHHHHhcCcCCCccEEEEcCe-------------------EEEEecCCC-Ccc-c
Q psy1503 108 NAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSLGGT-------------------VSYASQEPW-IFA-A 166 (265)
Q Consensus 108 ~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g~-------------------i~~v~Q~~~-l~~-~ 166 (265)
.++||++++|++++|+|||||||||+++.|+|+++|++|+|.+.|. ++|++|++. +++ .
T Consensus 148 ~~l~l~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~G~V~l~g~D~~r~~a~eql~~~~~r~~i~~v~q~~~~~~p~~ 227 (359)
T 2og2_A 148 TELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAAT 227 (359)
T ss_dssp CSCCCCSSSSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCSSSSCCHHH
T ss_pred CCcceecCCCeEEEEEcCCCChHHHHHHHHHhhccccCCEEEEecccccccchhHHHHHHHHhcCeEEEEecccccChhh
Confidence 4688999999999999999999999999999999999999998761 799999987 765 5
Q ss_pred cHHHHHhcCCcccHHHHHHHHHHhcchhHHhcCCCCCccccCCCCCCCCHHHHHHHHHHHHHccCCC--EEEEeCCCCCc
Q psy1503 167 TIRQNILFGLPYLRRRYADVIRVCALQDDFDSLPNGDFTVVGERGASLSGGQKARINLARAVYKNAD--IYLLDDPLSAV 244 (265)
Q Consensus 167 ti~eni~~~~~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~vg~~g~~LSgGqrqRialARal~~~~~--illLDEp~s~L 244 (265)
|+++|+.++.... .. ...++.. |..........+|| |||++||||+..+|+ +++|| ||+++
T Consensus 228 tv~e~l~~~~~~~----------~d-~~lldt~--Gl~~~~~~~~~eLS---kqr~~iaral~~~P~e~lLvLD-pttgl 290 (359)
T 2og2_A 228 VLSKAVKRGKEEG----------YD-VVLCDTS--GRLHTNYSLMEELI---ACKKAVGKIVSGAPNEILLVLD-GNTGL 290 (359)
T ss_dssp HHHHHHHHHHHTT----------CS-EEEEECC--CCSSCCHHHHHHHH---HHHHHHHHHSTTCCSEEEEEEE-GGGGG
T ss_pred hHHHHHHHHHhCC----------CH-HHHHHhc--CCChhhhhHHHHHH---HHHHHHHHHHhcCCCceEEEEc-CCCCC
Confidence 9999987642100 00 0011111 11111112234688 999999999999999 99999 99999
Q ss_pred CHHHHHHHHH
Q psy1503 245 DMHVGKHLFE 254 (265)
Q Consensus 245 D~~~~~~i~~ 254 (265)
|+.....-+.
T Consensus 291 D~~~~~~~~~ 300 (359)
T 2og2_A 291 NMLPQAREFN 300 (359)
T ss_dssp GGHHHHHHHH
T ss_pred CHHHHHHHHH
Confidence 9987755443
No 78
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=99.79 E-value=1.3e-20 Score=171.79 Aligned_cols=92 Identities=16% Similarity=0.200 Sum_probs=73.9
Q ss_pred ceeeceEEEcCCcEEEEEcCCCChHHHHHHHHhcCcCCCccEEEEcCeEEEEecCCCCccccHHHHHhcCCcccHHHHHH
Q psy1503 106 TLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSLGGTVSYASQEPWIFAATIRQNILFGLPYLRRRYAD 185 (265)
Q Consensus 106 ~l~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g~i~~v~Q~~~l~~~ti~eni~~~~~~~~~~~~~ 185 (265)
++++++|.+++|+.++|+||||||||||+++|+|+++|++|.|.++|..-+. + + ..++++
T Consensus 160 ~l~~l~~~i~~g~~v~i~G~~GsGKTTll~~l~g~~~~~~g~i~i~~~~e~~-----~-~-~~~~~i------------- 219 (330)
T 2pt7_A 160 AISAIKDGIAIGKNVIVCGGTGSGKTTYIKSIMEFIPKEERIISIEDTEEIV-----F-K-HHKNYT------------- 219 (330)
T ss_dssp HHHHHHHHHHHTCCEEEEESTTSCHHHHHHHGGGGSCTTSCEEEEESSCCCC-----C-S-SCSSEE-------------
T ss_pred HHhhhhhhccCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcEEEECCeeccc-----c-c-cchhEE-------------
Confidence 6899999999999999999999999999999999999999999988742100 0 0 000000
Q ss_pred HHHHhcchhHHhcCCCCCccccCCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCC
Q psy1503 186 VIRVCALQDDFDSLPNGDFTVVGERGASLSGGQKARINLARAVYKNADIYLLDDPLS 242 (265)
Q Consensus 186 ~~~~~~l~~~i~~l~~g~~t~vg~~g~~LSgGqrqRialARal~~~~~illLDEp~s 242 (265)
..++ | |||+||++|||||..+|+++|||||++
T Consensus 220 -----------~~~~-------g-------gg~~~r~~la~aL~~~p~ilildE~~~ 251 (330)
T 2pt7_A 220 -----------QLFF-------G-------GNITSADCLKSCLRMRPDRIILGELRS 251 (330)
T ss_dssp -----------EEEC-------B-------TTBCHHHHHHHHTTSCCSEEEECCCCS
T ss_pred -----------EEEe-------C-------CChhHHHHHHHHhhhCCCEEEEcCCCh
Confidence 0000 1 899999999999999999999999998
No 79
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=99.77 E-value=8.3e-22 Score=163.74 Aligned_cols=98 Identities=22% Similarity=0.211 Sum_probs=75.6
Q ss_pred cEEEEEcCCCChHHHHHHHHhcCcCCC---ccEEEEcCe-----------------EE----EEecCCCCccccHHHHHh
Q psy1503 118 QLACIIGAIGAGKTSLLHIILNELRIS---SGKVSLGGT-----------------VS----YASQEPWIFAATIRQNIL 173 (265)
Q Consensus 118 ~~~~ivG~~GsGKSTLl~~l~g~~~~~---~G~i~~~g~-----------------i~----~v~Q~~~l~~~ti~eni~ 173 (265)
++++|+|+||||||||+++|+|+++|+ .|+|.++|. ++ +++|++++| +++
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~~g~~~G~I~~dg~~i~~~~~~~~d~~r~~~ig~~~~~~~~~~~~~---i~~--- 76 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRERGLRVAVVKRHAHGDFEIDKEGKDSWKIYNSGADVVIASPVKLAF---IRR--- 76 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHHTTCCEEEEEC------------CHHHHHHHHTCEEEEECSSEEEE---EEE---
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhhcCCceEEEEEcCcccccCCccchhHHHHHhcCCceEEECCCcEEE---Eec---
Confidence 589999999999999999999999998 899998763 22 444444433 000
Q ss_pred cCCcccHHHHHHHHHHhcchhHHhc-CCCCCccccCCCCCCCCHHHHHHHHHHHHHccCCCEE
Q psy1503 174 FGLPYLRRRYADVIRVCALQDDFDS-LPNGDFTVVGERGASLSGGQKARINLARAVYKNADIY 235 (265)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~l~~~i~~-l~~g~~t~vg~~g~~LSgGqrqRialARal~~~~~il 235 (265)
.+ +. . .+++.+.+.. +| |++|.++|+ |||||||||+||||++++|+++
T Consensus 77 ----~~-~~---~--~a~l~~~i~~~l~-g~dt~i~Eg---lSgGq~qri~lARall~~p~i~ 125 (171)
T 2f1r_A 77 ----VS-EE---E--GNDLDWIYERYLS-DYDLVITEG---FSKAGKDRIVVVKKPEEVEHFR 125 (171)
T ss_dssp ----CC-HH---H--HTCHHHHHHHHTT-TCSEEEEES---CGGGCCCEEEECSSGGGGGGGC
T ss_pred ----CC-hh---h--hhCHHHHHHhhCC-CCCEEEECC---cCCCCCcEEEEEecccCCCccC
Confidence 01 11 1 5678888888 99 999999995 9999999999999999999874
No 80
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=99.76 E-value=7.6e-22 Score=174.36 Aligned_cols=155 Identities=14% Similarity=0.117 Sum_probs=113.6
Q ss_pred cceeeceEEEcCCcEEEEEcCCCChHHHHHHHHhcCcCCC-ccEEEEcCe---------EEEEec-----CCCCccccHH
Q psy1503 105 LTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRIS-SGKVSLGGT---------VSYASQ-----EPWIFAATIR 169 (265)
Q Consensus 105 ~~l~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~-~G~i~~~g~---------i~~v~Q-----~~~l~~~ti~ 169 (265)
++|+++| +++|++++|+||||||||||+++|+|+++|+ +|+|.++|. +++++| ++..|..+++
T Consensus 15 ~vl~~i~--i~~g~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~~~g~~i~~~~~~~~~~v~q~~~gl~~~~l~~~la 92 (261)
T 2eyu_A 15 DKVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYVFKHKKSIVNQREVGEDTKSFADALR 92 (261)
T ss_dssp THHHHGG--GCSSEEEEEECSTTCSHHHHHHHHHHHHHHHCCCEEEEEESSCCSCCCCSSSEEEEEEBTTTBSCHHHHHH
T ss_pred HHHHHHh--hCCCCEEEEECCCCccHHHHHHHHHHhCCCCCCCEEEEcCCcceeecCCcceeeeHHHhCCCHHHHHHHHH
Confidence 4899999 8999999999999999999999999999998 999988763 344555 3344555777
Q ss_pred HHHhcCCcc-------cHHHHHHHHHHhcc-----------------hhHHh------------cCCCCCccccCCCCCC
Q psy1503 170 QNILFGLPY-------LRRRYADVIRVCAL-----------------QDDFD------------SLPNGDFTVVGERGAS 213 (265)
Q Consensus 170 eni~~~~~~-------~~~~~~~~~~~~~l-----------------~~~i~------------~l~~g~~t~vg~~g~~ 213 (265)
.++....+. +.+....+++.+.. +..+. .++.++++.|++++..
T Consensus 93 ~aL~~~p~illlDEp~D~~~~~~~l~~~~~g~~vl~t~H~~~~~~~~dri~~l~~~~~~~~~~~~l~~~l~~vi~qrl~~ 172 (261)
T 2eyu_A 93 AALREDPDVIFVGEMRDLETVETALRAAETGHLVFGTLHTNTAIDTIHRIVDIFPLNQQEQVRIVLSFILQGIISQRLLP 172 (261)
T ss_dssp HHHHHCCSEEEESCCCSHHHHHHHHHHHHTTCEEEEEECCSSHHHHHHHHHHTSCGGGHHHHHHHHHHHEEEEEEEEEEC
T ss_pred HHHhhCCCEEEeCCCCCHHHHHHHHHHHccCCEEEEEeCcchHHHHHHHHhhhcCccccchHHHHHHHHhhEEEEEEeEe
Confidence 777764332 44444444443211 11111 2345677889999999
Q ss_pred CCHHHHHHHHHHHHHccCCCE--EEEeCCCCCcCHHHH--------HHHHHHHHHHHhhc
Q psy1503 214 LSGGQKARINLARAVYKNADI--YLLDDPLSAVDMHVG--------KHLFEDCISGCLTS 263 (265)
Q Consensus 214 LSgGqrqRialARal~~~~~i--llLDEp~s~LD~~~~--------~~i~~~~i~~~l~~ 263 (265)
+|+| ||+++||+++.+|++ +|+||+|+++|...+ +.+.+.++..+.++
T Consensus 173 ~~~G--~R~~i~e~l~~~~~i~~li~d~~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~g 230 (261)
T 2eyu_A 173 KIGG--GRVLAYGLLIPNTAIRNLIRENKLQQVYSLMQSGQAETGMQTMNQTLYKLYKQG 230 (261)
T ss_dssp CSSS--SSEEEEEEECCCHHHHHHHHHTCHHHHHHHHHHSCSCTTEECHHHHHHHHHHTT
T ss_pred cCCC--CEEEEEEEecCCHHHHHHHHcCCHHHHHHHHHHhHHhcCCccHHHHHHHHHHcC
Confidence 9999 899999999999999 999999999998743 23445555554444
No 81
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=99.76 E-value=1e-20 Score=164.82 Aligned_cols=127 Identities=17% Similarity=0.129 Sum_probs=81.0
Q ss_pred CCcceeeceEEEcCCcEEEEEcCCCChHHHHHHHHhcCcCCCccEEEE---cCeEEEEecCCCCccccHHHHHhcCCc--
Q psy1503 103 ADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSL---GGTVSYASQEPWIFAATIRQNILFGLP-- 177 (265)
Q Consensus 103 ~~~~l~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~---~g~i~~v~Q~~~l~~~ti~eni~~~~~-- 177 (265)
..++|+|+||++++|++++|+||||||||||+++|+|++ |.+.+ ...++|++|++.....|+.+|+.+...
T Consensus 11 ~~~~l~~isl~i~~g~iigI~G~~GsGKSTl~k~L~~~l----G~~~~~~~~~~i~~v~~d~~~~~l~~~~~~~~~~~~~ 86 (245)
T 2jeo_A 11 VDLGTENLYFQSMRPFLIGVSGGTASGKSTVCEKIMELL----GQNEVEQRQRKVVILSQDRFYKVLTAEQKAKALKGQY 86 (245)
T ss_dssp ------------CCSEEEEEECSTTSSHHHHHHHHHHHH----TGGGSCGGGCSEEEEEGGGGBCCCCHHHHHHHHTTCC
T ss_pred CceeecceeccCCCCEEEEEECCCCCCHHHHHHHHHHHh----chhcccccCCceEEEeCCcCccccCHhHhhhhhccCC
Confidence 456899999999999999999999999999999999976 44432 235899999963324589998764221
Q ss_pred -c------cHHHHHHHHHHhcchhHHhcCCCCCccccCCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCcCHH
Q psy1503 178 -Y------LRRRYADVIRVCALQDDFDSLPNGDFTVVGERGASLSGGQKARINLARAVYKNADIYLLDDPLSAVDMH 247 (265)
Q Consensus 178 -~------~~~~~~~~~~~~~l~~~i~~l~~g~~t~vg~~g~~LSgGqrqRialARal~~~~~illLDEp~s~LD~~ 247 (265)
+ +.+.+.+.++. +. .+.. .....||+||+||+++ ++++.+|+++|||||....|..
T Consensus 87 ~~~~~~~~~~~~~~~~L~~------l~---~~~~----~~~~~ls~g~~~r~~~-~~~~~~~~~lilDg~~~~~~~~ 149 (245)
T 2jeo_A 87 NFDHPDAFDNDLMHRTLKN------IV---EGKT----VEVPTYDFVTHSRLPE-TTVVYPADVVLFEGILVFYSQE 149 (245)
T ss_dssp CTTSGGGBCHHHHHHHHHH------HH---TTCC----EEECCEETTTTEECSS-CEEECCCSEEEEECTTTTTSHH
T ss_pred CCCCcccccHHHHHHHHHH------HH---CCCC----eecccccccccCccCc-eEEecCCCEEEEeCccccccHH
Confidence 1 11122222221 11 1111 1335799999999988 6888999999999999887754
No 82
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=99.74 E-value=1.3e-19 Score=171.04 Aligned_cols=142 Identities=15% Similarity=0.013 Sum_probs=108.6
Q ss_pred CcEEEEeEEEEeCCCCCCcceeeceEEEcCCcEEEEEcCCCChHHHHHHHHhcCcCCCccEEEEcCe-------------
Q psy1503 87 GHVSLDNVTAQWSLQNADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSLGGT------------- 153 (265)
Q Consensus 87 ~~i~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g~------------- 153 (265)
..++++++++.|+. +..+|+++ |+|.+|++++|+||||||||||+++|+|+.+|+.|.|.++|.
T Consensus 130 ~~l~~~~v~~~~~t--g~~vld~v-l~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~~~~G~i~~~G~r~~ev~~~~~~~~ 206 (438)
T 2dpy_A 130 NPLQRTPIEHVLDT--GVRAINAL-LTVGRGQRMGLFAGSGVGKSVLLGMMARYTRADVIVVGLIGERGREVKDFIENIL 206 (438)
T ss_dssp CTTTSCCCCSBCCC--SCHHHHHH-SCCBTTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEESCCHHHHHHHHHTTT
T ss_pred CceEEeccceecCC--CceEEeee-EEecCCCEEEEECCCCCCHHHHHHHHhcccCCCeEEEEEeceecHHHHHHHHhhc
Confidence 46889999999963 35699999 999999999999999999999999999999999999998773
Q ss_pred --------EEEEecC-CCCc-cccHHHHHhcCCcccHHHHHHHHHHhcchhHHhcCCCCCccccCCCCCCCCHHHHHHHH
Q psy1503 154 --------VSYASQE-PWIF-AATIRQNILFGLPYLRRRYADVIRVCALQDDFDSLPNGDFTVVGERGASLSGGQKARIN 223 (265)
Q Consensus 154 --------i~~v~Q~-~~l~-~~ti~eni~~~~~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~vg~~g~~LSgGqrqRia 223 (265)
++|++|+ ..++ ..|+.+|+.+... +.. ..+ ..+.. +-+....||+|| ||++
T Consensus 207 ~~~~l~r~i~~v~q~~~~~~~~~~v~~~~~~~ae-----~~~---~~~--~~v~~--------~ld~l~~lS~g~-qrvs 267 (438)
T 2dpy_A 207 GPDGRARSVVIAAPADVSPLLRMQGAAYATRIAE-----DFR---DRG--QHVLL--------IMDSLTRYAMAQ-REIA 267 (438)
T ss_dssp HHHHHHTEEEEEECTTSCHHHHHHHHHHHHHHHH-----HHH---TTT--CEEEE--------EEECHHHHHHHH-HHHH
T ss_pred cccccCceEEEEECCCCCHHHHHHHHHHHHHHHH-----HHH---hCC--CCHHH--------HHHhHHHHHHHH-HHHH
Confidence 7999995 3344 4689999876421 111 000 01100 012246799999 9999
Q ss_pred HHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHH
Q psy1503 224 LARAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGC 260 (265)
Q Consensus 224 lARal~~~~~illLDEp~s~LD~~~~~~i~~~~i~~~ 260 (265)
|| +.+|++ |++||+.+...+.+ .+.++
T Consensus 268 lA---l~~p~~------t~glD~~~~~~l~~-ll~r~ 294 (438)
T 2dpy_A 268 LA---IGEPPA------TKGYPPSVFAKLPA-LVERA 294 (438)
T ss_dssp HH---TTCCCC------SSSCCTTHHHHHHH-HHTTC
T ss_pred HH---hCCCcc------cccCCHHHHHHHHH-HHHHH
Confidence 99 789988 99999999988754 44433
No 83
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.74 E-value=2.2e-20 Score=157.17 Aligned_cols=155 Identities=13% Similarity=0.093 Sum_probs=87.9
Q ss_pred cEEEEeEEEEeCCCCCCcceeeceEEEcCCcEEEEEcCCCChHHHHHHHHhcCc-----CCCccEEEEcCe------EEE
Q psy1503 88 HVSLDNVTAQWSLQNADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNEL-----RISSGKVSLGGT------VSY 156 (265)
Q Consensus 88 ~i~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~g~~-----~~~~G~i~~~g~------i~~ 156 (265)
.++++|++|.|+ .+++++ |++++|..++|+|++|||||||++.|+|.. .|+.|++...+. +-+
T Consensus 3 ~l~~~~~~~~~~----~~~l~~--~~~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~~~~~~~l 76 (210)
T 1pui_A 3 NLNYQQTHFVMS----APDIRH--LPSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVADGKRL 76 (210)
T ss_dssp --------CEEE----ESSGGG--SSCSCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEETTEEE
T ss_pred chhhhhhhheee----cCCHhH--CCCCCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEEecCCEEE
Confidence 478999999995 246777 899999999999999999999999999998 888887754321 111
Q ss_pred EecCCCCc------------cccHHHHHh---cC----------CcccHHHHHHHHHHhcchhHHhcCCCCCccccCCCC
Q psy1503 157 ASQEPWIF------------AATIRQNIL---FG----------LPYLRRRYADVIRVCALQDDFDSLPNGDFTVVGERG 211 (265)
Q Consensus 157 v~Q~~~l~------------~~ti~eni~---~~----------~~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~vg~~g 211 (265)
+ ..|-.. ...+...+. .. ...... ..++.+.. . ...+| .-.++.+.
T Consensus 77 ~-Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~-~~~~~~~~---~-~~~~~---~~~v~nK~ 147 (210)
T 1pui_A 77 V-DLPGYGYAEVPEEMKRKWQRALGEYLEKRQSLQGLVVLMDIRHPLKDL-DQQMIEWA---V-DSNIA---VLVLLTKA 147 (210)
T ss_dssp E-ECCCCC------CCHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHH-HHHHHHHH---H-HTTCC---EEEEEECG
T ss_pred E-ECcCCcccccCHHHHHHHHHHHHHHHHhhhcccEEEEEEECCCCCchh-HHHHHHHH---H-HcCCC---eEEEEecc
Confidence 1 111110 000111110 00 000110 01111111 0 01122 11245666
Q ss_pred CCCCHHHHHH-HHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHH
Q psy1503 212 ASLSGGQKAR-INLARAVYKNADIYLLDDPLSAVDMHVGKHLFEDCI 257 (265)
Q Consensus 212 ~~LSgGqrqR-ialARal~~~~~illLDEp~s~LD~~~~~~i~~~~i 257 (265)
..+|+||||| +..||+++.+|+++++|||||++|.....++++.+.
T Consensus 148 D~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~Sal~~~~~~~l~~~l~ 194 (210)
T 1pui_A 148 DKLASGARKAQLNMVREAVLAFNGDVQVETFSSLKKQGVDKLRQKLD 194 (210)
T ss_dssp GGSCHHHHHHHHHHHHHHHGGGCSCEEEEECBTTTTBSHHHHHHHHH
T ss_pred cCCCchhHHHHHHHHHHHHHhcCCCCceEEEeecCCCCHHHHHHHHH
Confidence 7899999999 899999999999999999999999999988877554
No 84
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=99.72 E-value=8.5e-21 Score=174.69 Aligned_cols=135 Identities=16% Similarity=0.150 Sum_probs=89.4
Q ss_pred eeeceEEEcC--CcEEEEEcCCCChHHHHHHHHhcCcCCCc----cEEEEc----C-----------eEEEEecCCCCcc
Q psy1503 107 LNAVSITFKP--KQLACIIGAIGAGKTSLLHIILNELRISS----GKVSLG----G-----------TVSYASQEPWIFA 165 (265)
Q Consensus 107 l~~isl~i~~--G~~~~ivG~~GsGKSTLl~~l~g~~~~~~----G~i~~~----g-----------~i~~v~Q~~~l~~ 165 (265)
.+.|++++++ |+.++|+||||||||||+++|+|+++|++ |++.++ | .|++++|++.+|+
T Consensus 158 ~~~v~~~v~~~lg~k~~IvG~nGsGKSTLlk~L~gl~~~~~~~e~G~i~i~~~~~~~~~~~~~~~~~~I~~~~q~~~~~~ 237 (365)
T 1lw7_A 158 WKFIPKEARPFFAKTVAILGGESSGKSVLVNKLAAVFNTTSAWEYGREFVFEKLGGDEQAMQYSDYPQMALGHQRYIDYA 237 (365)
T ss_dssp GGGSCTTTGGGTCEEEEEECCTTSHHHHHHHHHHHHTTCEEECCTTHHHHHHSSSSCTTSSCTTTHHHHHHHHHHHHHHH
T ss_pred hhhCCHHHHHhhhCeEEEECCCCCCHHHHHHHHHHHhCCCcchhhHHHHHHhhcCCCcccCChhHHHHHHHHHHHHHHHH
Confidence 5679999999 99999999999999999999999999999 888763 2 1677888877788
Q ss_pred ccHHHHHhcCCcc-cHHHHHHHHHHhcchhHHhcCCC--CCcc--------ccCCCCCCCCHHHHHHHHHHHHH---cc-
Q psy1503 166 ATIRQNILFGLPY-LRRRYADVIRVCALQDDFDSLPN--GDFT--------VVGERGASLSGGQKARINLARAV---YK- 230 (265)
Q Consensus 166 ~ti~eni~~~~~~-~~~~~~~~~~~~~l~~~i~~l~~--g~~t--------~vg~~g~~LSgGqrqRialARal---~~- 230 (265)
.|+++||.++... .................+..++. ..+. ...++|.++|+||+||++++|+| ++
T Consensus 238 ~t~~~nl~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~lllLdE~~~p~~~~g~~~sld~~~r~~l~~~l~~l~~~ 317 (365)
T 1lw7_A 238 VRHSHKIAFIDTDFITTQAFCIQYEGKAHPFLDSMIKEYPFDVTILLKNNTEWVDDGLRSLGSQKQRQQFQQLLKKLLDK 317 (365)
T ss_dssp HHHCSSEEEESSCHHHHHHHHHHHHSCCCHHHHHHHHHSCCSEEEEEECCCC-----------CCSHHHHHHHHHHHHHG
T ss_pred HhccCCEEEEeCCchHHHHHHHHHcCCCCHHHHHHHhhcCCCEEEECCCCCCcccCCCcCCccHHHHHHHHHHHHHHHHH
Confidence 8999998876432 11111111111111222222211 1122 11256678999999999999999 77
Q ss_pred -CCCEEEEeCCC
Q psy1503 231 -NADIYLLDDPL 241 (265)
Q Consensus 231 -~~~illLDEp~ 241 (265)
+++++++|||+
T Consensus 318 ~~~~ililde~~ 329 (365)
T 1lw7_A 318 YKVPYIEIESPS 329 (365)
T ss_dssp GGCCCEEEECSS
T ss_pred cCCCEEEeCCCC
Confidence 89999999997
No 85
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=99.72 E-value=3.8e-20 Score=156.67 Aligned_cols=121 Identities=13% Similarity=0.143 Sum_probs=92.1
Q ss_pred EcCCcEEEEEcCCCChHHHHHHHHhcCcCCCccEEEEcCeEEEEecCCCCcc---ccHHHHHhcCC--c--ccHHHHHHH
Q psy1503 114 FKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSLGGTVSYASQEPWIFA---ATIRQNILFGL--P--YLRRRYADV 186 (265)
Q Consensus 114 i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g~i~~v~Q~~~l~~---~ti~eni~~~~--~--~~~~~~~~~ 186 (265)
.++|++++|+||||||||||+++|.|++.| .++|++|++.+++ .|+.+|+.+.. + .+.+++.+.
T Consensus 3 ~~~~~~i~i~G~~GsGKSTl~~~l~~~~~~---------~i~~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (211)
T 3asz_A 3 APKPFVIGIAGGTASGKTTLAQALARTLGE---------RVALLPMDHYYKDLGHLPLEERLRVNYDHPDAFDLALYLEH 73 (211)
T ss_dssp --CCEEEEEEESTTSSHHHHHHHHHHHHGG---------GEEEEEGGGCBCCCTTSCHHHHHHSCTTSGGGBCHHHHHHH
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHHHhCC---------CeEEEecCccccCcccccHHHhcCCCCCChhhhhHHHHHHH
Confidence 578999999999999999999999999876 5899999998873 37888766532 1 234455556
Q ss_pred HHHhcchhHHhcCCCCCccccCCCCCCCCHHH----HHHHHHHHHHccCCCEEEEeCCCCC-------cCHHHHHHHHH
Q psy1503 187 IRVCALQDDFDSLPNGDFTVVGERGASLSGGQ----KARINLARAVYKNADIYLLDDPLSA-------VDMHVGKHLFE 254 (265)
Q Consensus 187 ~~~~~l~~~i~~l~~g~~t~vg~~g~~LSgGq----rqRialARal~~~~~illLDEp~s~-------LD~~~~~~i~~ 254 (265)
++..++.+.+. ..+..+|+|| +||+++||+++.+|+++++|||+++ ||+..+.++.+
T Consensus 74 l~~~~~~~~~~-----------~~~~~~s~g~~~~~~~~~~~~~~li~~~~ll~~de~~~~~~d~~i~ld~~~~~~~~r 141 (211)
T 3asz_A 74 AQALLRGLPVE-----------MPVYDFRAYTRSPRRTPVRPAPVVILEGILVLYPKELRDLMDLKVFVDADADERFIR 141 (211)
T ss_dssp HHHHHTTCCEE-----------ECCEETTTTEECSSCEEECCCSEEEEESTTTTSSHHHHTTCSEEEEEECCHHHHHHH
T ss_pred HHHHHcCCCcC-----------CCcccCcccCCCCCeEEeCCCcEEEEeehhhccCHHHHHhcCEEEEEeCCHHHHHHH
Confidence 55554433332 2345677775 5789999999999999999999999 99988777654
No 86
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=99.72 E-value=6.6e-21 Score=176.34 Aligned_cols=138 Identities=16% Similarity=0.153 Sum_probs=110.2
Q ss_pred ceeeceEEEcCCcEEEEEcCCCChHHHHHHHHhcCcCCC-ccEEEEcC---------eEEEEec-----CCCCccccHHH
Q psy1503 106 TLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRIS-SGKVSLGG---------TVSYASQ-----EPWIFAATIRQ 170 (265)
Q Consensus 106 ~l~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~-~G~i~~~g---------~i~~v~Q-----~~~l~~~ti~e 170 (265)
+|++++ +++|++++|+||||||||||+++|+|+++|+ +|+|.+.+ .++|++| ++..|..++++
T Consensus 127 ~l~~l~--~~~g~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~~e~~~e~~~~~~~~~v~Q~~~g~~~~~~~~~l~~ 204 (372)
T 2ewv_A 127 KVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYVFKHKKSIVNQREVGEDTKSFADALRA 204 (372)
T ss_dssp SHHHHT--TSSSEEEEEECSSSSSHHHHHHHHHHHHHHHSCCEEEEEESSCCSCCCCSSSEEEEEEBTTTBSCSHHHHHH
T ss_pred HHHHHh--hcCCCEEEEECCCCCCHHHHHHHHHhhcCcCCCcEEEEecccHhhhhccCceEEEeeecCCCHHHHHHHHHH
Confidence 455554 7899999999999999999999999999998 89996533 3788999 78888999999
Q ss_pred HHhcCCcc-------cHHHHHHHHHHhcch-----------------hHHh------------cCCCCCccccCCCCCCC
Q psy1503 171 NILFGLPY-------LRRRYADVIRVCALQ-----------------DDFD------------SLPNGDFTVVGERGASL 214 (265)
Q Consensus 171 ni~~~~~~-------~~~~~~~~~~~~~l~-----------------~~i~------------~l~~g~~t~vg~~g~~L 214 (265)
|+...... +.+.+..+++++... ..+. .++.++++.|++++..+
T Consensus 205 ~L~~~pd~illdE~~d~e~~~~~l~~~~~g~~vi~t~H~~~~~~~~~rl~~l~~~~~~~~~~~~l~~~l~~vv~qrl~~~ 284 (372)
T 2ewv_A 205 ALREDPDVIFVGEMRDLETVETALRAAETGHLVFGTLHTNTAIDTIHRIVDIFPLNQQEQVRIVLSFILQGIISQRLLPK 284 (372)
T ss_dssp HTTSCCSEEEESCCCSHHHHHHHHHHHTTTCEEEECCCCCSHHHHHHHHHHTSCTTSHHHHHHHHHHSCCEEEEEEEEEC
T ss_pred HhhhCcCEEEECCCCCHHHHHHHHHHHhcCCEEEEEECcchHHHHHHHHHHhcCcccchhHHHHHHHhhhEEEEEEeEec
Confidence 99875433 555555556554321 1111 13557788899999899
Q ss_pred CHHHHHHHHHHHHHccCCCE--EEEeCCCCCcCHH
Q psy1503 215 SGGQKARINLARAVYKNADI--YLLDDPLSAVDMH 247 (265)
Q Consensus 215 SgGqrqRialARal~~~~~i--llLDEp~s~LD~~ 247 (265)
|+| ||+++||+++.+|++ +|+||+|+++|..
T Consensus 285 ~~G--~R~~i~e~l~~~~~i~~li~d~~~~~l~~~ 317 (372)
T 2ewv_A 285 IGG--GRVLAYELLIPNTAIRNLIRENKLQQVYSL 317 (372)
T ss_dssp SSS--SEEEEEEECCCCSHHHHHHHHTCHHHHHHH
T ss_pred CCC--CEEEEEEEeeCCHHHHHHHHcCCHHHHHHH
Confidence 999 899999999999999 9999999999965
No 87
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=99.71 E-value=3.1e-18 Score=175.85 Aligned_cols=138 Identities=12% Similarity=0.102 Sum_probs=97.1
Q ss_pred CcEEEEe-----EEEEeCCCCCCcceeeceEEEcC-------CcEEEEEcCCCChHHHHHHHHhcCcCCCccEEEEcCeE
Q psy1503 87 GHVSLDN-----VTAQWSLQNADLTLNAVSITFKP-------KQLACIIGAIGAGKTSLLHIILNELRISSGKVSLGGTV 154 (265)
Q Consensus 87 ~~i~~~~-----~~~~~~~~~~~~~l~~isl~i~~-------G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g~i 154 (265)
..|++++ +++.|+. ..++++|++|++++ |++++|+||||||||||++++ |++.+- .++
T Consensus 749 ~~l~i~~~rHP~l~~~~~~--~~~v~ndi~l~~~~~~~~~~~g~i~~ItGpNgsGKSTlLr~i-Gl~~~~-------aqi 818 (1022)
T 2o8b_B 749 PFLELKGSRHPCITKTFFG--DDFIPNDILIGCEEEEQENGKAYCVLVTGPNMGGKSTLMRQA-GLLAVM-------AQM 818 (1022)
T ss_dssp CCEEEEEECCCC------C--CCCCCEEEEESCCCSCC---CCCEEEEECCTTSSHHHHHHHH-HHHHHH-------HTT
T ss_pred ceEEEEeccccEEEEEecC--CceEeeeeeeccccccccCCCCcEEEEECCCCCChHHHHHHH-HHHHHH-------hhe
Confidence 4699999 9988842 35799999999987 999999999999999999999 988752 235
Q ss_pred E-EEecCCCCccccHHHHHhcCCcccHHHHHHHHHHhcchhHHhcCCCCCccccCCCCCCCCHHHHHHHHHHHHHccCCC
Q psy1503 155 S-YASQEPWIFAATIRQNILFGLPYLRRRYADVIRVCALQDDFDSLPNGDFTVVGERGASLSGGQKARINLARAVYKNAD 233 (265)
Q Consensus 155 ~-~v~Q~~~l~~~ti~eni~~~~~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~vg~~g~~LSgGqrqRialARal~~~~~ 233 (265)
| ||||++. ..|+.|+|... .++.+.+. .+..++|+++++ +++|++++.+|+
T Consensus 819 G~~Vpq~~~--~l~v~d~I~~r--------------ig~~d~~~-----------~~~stf~~em~~-~a~al~la~~~s 870 (1022)
T 2o8b_B 819 GCYVPAEVC--RLTPIDRVFTR--------------LGASDRIM-----------SGESTFFVELSE-TASILMHATAHS 870 (1022)
T ss_dssp TCCEESSEE--EECCCSBEEEE--------------CC--------------------CHHHHHHHH-HHHHHHHCCTTC
T ss_pred eEEeccCcC--CCCHHHHHHHH--------------cCCHHHHh-----------hchhhhHHHHHH-HHHHHHhCCCCc
Confidence 5 9999873 44666665321 11111111 122467887775 999999999999
Q ss_pred EEEEeCCCCCcCHHHHHHHHHHHHHHHhh
Q psy1503 234 IYLLDDPLSAVDMHVGKHLFEDCISGCLT 262 (265)
Q Consensus 234 illLDEp~s~LD~~~~~~i~~~~i~~~l~ 262 (265)
++|||||++|+|+.....+...++..+.+
T Consensus 871 LlLLDEp~~Gtd~~dg~~~~~~il~~L~~ 899 (1022)
T 2o8b_B 871 LVLVDELGRGTATFDGTAIANAVVKELAE 899 (1022)
T ss_dssp EEEEECTTTTSCHHHHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCChHHHHHHHHHHHHHHHh
Confidence 99999999999999876655556655543
No 88
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=99.70 E-value=6.7e-20 Score=164.26 Aligned_cols=128 Identities=18% Similarity=0.178 Sum_probs=90.8
Q ss_pred cCCcEEEEEcCCCChHHHHHHHHhcCcCCCccEEEEcCeEEEEecCCCCccccHHHHHhcCCcc----cHHHHHHHHHHh
Q psy1503 115 KPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSLGGTVSYASQEPWIFAATIRQNILFGLPY----LRRRYADVIRVC 190 (265)
Q Consensus 115 ~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g~i~~v~Q~~~l~~~ti~eni~~~~~~----~~~~~~~~~~~~ 190 (265)
+++.+++|+|++|||||||++.|.+++.+.... ...+.+|+|++++++.++++|+.++.+. .......+.+..
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~l~~~g~~---~~~~~iv~~D~f~~~~~~~~~l~~~~~~~~l~~~~g~p~a~d~~ 105 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNHLMEKYGG---EKSIGYASIDDFYLTHEDQLKLNEQFKNNKLLQGRGLPGTHDMK 105 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHHHHGG---GSCEEEEEGGGGBCCHHHHHHHHHHTTTCGGGSSSCSTTSBCHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhhhcCCC---CceEEEeccccccCChHHHHHHhccccccchhhhccCcchhHHH
Confidence 467899999999999999999999998764111 1235566999999999999999765210 000000111122
Q ss_pred cchhHHhcCCCCCcc------ccCCCCCCCCHHHHHHHHHH--HHHccCCCEEEEeCCCCCcCHH
Q psy1503 191 ALQDDFDSLPNGDFT------VVGERGASLSGGQKARINLA--RAVYKNADIYLLDDPLSAVDMH 247 (265)
Q Consensus 191 ~l~~~i~~l~~g~~t------~vg~~g~~LSgGqrqRialA--Ral~~~~~illLDEp~s~LD~~ 247 (265)
.+.+.+..++.|++| .+...+.++||||+||+++| |++ +|+|+|+||+++++|+.
T Consensus 106 ~l~~~l~~l~~g~~t~~~~~v~~p~y~~~~sgGq~~R~~~a~~~~~--~~~IlIlEG~~~~ld~~ 168 (290)
T 1odf_A 106 LLQEVLNTIFNNNEHPDQDTVVLPKYDKSQFKGEGDRCPTGQKIKL--PVDIFILEGWFLGFNPI 168 (290)
T ss_dssp HHHHHHHHHTC------CCEEEECCEETTHHHHTCEECSSCEEEES--SCSEEEEEESSTTCCCC
T ss_pred HHHHHHHHhhccCccccCcceeeccCccccCCccccccccccceEc--CCCEEEEeCccccCCcc
Confidence 344567777777554 35566789999999999998 555 99999999999999975
No 89
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=99.69 E-value=6.7e-17 Score=148.76 Aligned_cols=44 Identities=25% Similarity=0.256 Sum_probs=41.2
Q ss_pred CCCHHHHHHHHHHHHHc---------cCCCEEEEeCCCCCcCHHHHHHHHHHH
Q psy1503 213 SLSGGQKARINLARAVY---------KNADIYLLDDPLSAVDMHVGKHLFEDC 256 (265)
Q Consensus 213 ~LSgGqrqRialARal~---------~~~~illLDEp~s~LD~~~~~~i~~~~ 256 (265)
.||||||||++|||+|+ .+|+|+|||||||+||+.....+++..
T Consensus 265 ~lS~Gqqq~l~lA~~La~~~l~~~~~~~p~iLLLDEp~s~LD~~~~~~l~~~l 317 (359)
T 2o5v_A 265 YASRGEGRTVALALRRAELELLREKFGEDPVLLLDDFTAELDPHRRQYLLDLA 317 (359)
T ss_dssp HCCHHHHHHHHHHHHHHHHHHHHHHHSSCCEEEECCGGGCCCHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHHHHHhhhhhhccCCCCEEEEeCccccCCHHHHHHHHHHH
Confidence 69999999999999999 899999999999999999999987643
No 90
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=99.69 E-value=3.3e-19 Score=160.35 Aligned_cols=131 Identities=16% Similarity=0.185 Sum_probs=67.8
Q ss_pred EeEEEEeCCCCCCcceeeceEEEcCCcEEEEEcCCCChHHHHHHHHhcC-cCCCccEEEEcC----------eEEEEecC
Q psy1503 92 DNVTAQWSLQNADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNE-LRISSGKVSLGG----------TVSYASQE 160 (265)
Q Consensus 92 ~~~~~~~~~~~~~~~l~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~g~-~~~~~G~i~~~g----------~i~~v~Q~ 160 (265)
+|+++.|+. ..++++++|+| +|+||||+|||||++.|.|. ..|++| +.++| .+++++|+
T Consensus 2 ~~l~~~~~~---~~~l~~~~~~I------~lvG~nG~GKSTLl~~L~g~~~~~~~g-i~~~g~~~~~t~~~~~~~~~~q~ 71 (301)
T 2qnr_A 2 SNLPNQVHR---KSVKKGFEFTL------MVVGESGLGKSTLINSLFLTDLYPERV-ISGAAEKIERTVQIEASTVEIEE 71 (301)
T ss_dssp -------------------CEEE------EEEEETTSSHHHHHHHHHC-------------------------CEEEEC-
T ss_pred CCCcceECC---EEEEcCCCEEE------EEECCCCCCHHHHHHHHhCCCccCCCC-cccCCcccCCcceEeeEEEEecC
Confidence 467888853 46899999998 99999999999999999998 888888 54433 26888988
Q ss_pred CCCc-cccHHHHHhcCCccc-HHHHHHHHHHhcchhHHhcCCCCCccccCCCCCCCCHHHHHHHHHHHHHccCCCEEEEe
Q psy1503 161 PWIF-AATIRQNILFGLPYL-RRRYADVIRVCALQDDFDSLPNGDFTVVGERGASLSGGQKARINLARAVYKNADIYLLD 238 (265)
Q Consensus 161 ~~l~-~~ti~eni~~~~~~~-~~~~~~~~~~~~l~~~i~~l~~g~~t~vg~~g~~LSgGqrqRialARal~~~~~illLD 238 (265)
+.++ ..|+.|+..++.... .+++..+.+. +.+... ....++|||||||+++|||+. ++++|
T Consensus 72 ~~~~~~ltv~Dt~g~~~~~~~~e~~~~l~~~--l~~~~~-----------~~~~~~sgg~rqrv~~ara~~----ll~ld 134 (301)
T 2qnr_A 72 RGVKLRLTVVDTPGYGDAINCRDCFKTIISY--IDEQFE-----------RYLHDESGLNRRHIIDNRVHC----CFYFI 134 (301)
T ss_dssp --CCEEEEEEEEC-----------CTTHHHH--HHHHHH-----------HHHHHHTSSCCTTCCCCCCCE----EEEEE
T ss_pred CCcccCcchhhhhhhhhhcCcHHHHHHHHHH--HHHHHH-----------HHHHHhCHHhhhhhhhhhhhh----eeeee
Confidence 7655 458888877653221 1111111111 111111 122479999999999999985 99999
Q ss_pred CCCCC-cCHHHH
Q psy1503 239 DPLSA-VDMHVG 249 (265)
Q Consensus 239 Ep~s~-LD~~~~ 249 (265)
|||++ ||+...
T Consensus 135 ePt~~~Ld~~~~ 146 (301)
T 2qnr_A 135 SPFGHGLKPLDV 146 (301)
T ss_dssp CSSSSSCCHHHH
T ss_pred cCcccCCCHHHH
Confidence 99985 999864
No 91
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=99.68 E-value=1.6e-19 Score=153.22 Aligned_cols=139 Identities=13% Similarity=0.075 Sum_probs=77.2
Q ss_pred CcceeeceEEEcCCcEEEEEcCCCChHHHHHHHHhcCcCCCccEEEE---------cCeEEEEecCCCCcc-ccHHHHHh
Q psy1503 104 DLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSL---------GGTVSYASQEPWIFA-ATIRQNIL 173 (265)
Q Consensus 104 ~~~l~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~---------~g~i~~v~Q~~~l~~-~ti~eni~ 173 (265)
.++++| .+|++|++++|+||||||||||+++|+|+++...+.+.+ ...++|++|++.+|+ .|+.+|+.
T Consensus 9 ~~~~~~--~~i~~Gei~~l~GpnGsGKSTLl~~l~gl~~~i~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~l~ 86 (207)
T 1znw_A 9 KPTARG--QPAAVGRVVVLSGPSAVGKSTVVRCLRERIPNLHFSVSATTRAPRPGEVDGVDYHFIDPTRFQQLIDQGELL 86 (207)
T ss_dssp ------------CCCEEEEECSTTSSHHHHHHHHHHHSTTCEECCCEESSCCCTTCCBTTTBEECCHHHHHHHHHTTCEE
T ss_pred CcCCCC--CCCCCCCEEEEECCCCCCHHHHHHHHHhhCCceEEcccccccCCcccccCCCeeEecCHHHHHHHHhcCCce
Confidence 567888 799999999999999999999999999998522221111 113889999988775 36777653
Q ss_pred c-----C--C--cccHHHHHHHHHHhcchhHHhcCCCCCccccCCCCCCCCHHHHHHHHHHH---HHccCCCEEEEeCCC
Q psy1503 174 F-----G--L--PYLRRRYADVIRVCALQDDFDSLPNGDFTVVGERGASLSGGQKARINLAR---AVYKNADIYLLDDPL 241 (265)
Q Consensus 174 ~-----~--~--~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~vg~~g~~LSgGqrqRialAR---al~~~~~illLDEp~ 241 (265)
. + . ........+.++... ..+. ...+.|.+.++-..++ ||+.+|++++|||||
T Consensus 87 ~~~~~~~n~~~~g~~~~~~~~~~~~~~--~~~~-------------~l~~~gl~~~~~~~~~~lS~l~~~p~~~~LDep~ 151 (207)
T 1znw_A 87 EWAEIHGGLHRSGTLAQPVRAAAATGV--PVLI-------------EVDLAGARAIKKTMPEAVTVFLAPPSWQDLQARL 151 (207)
T ss_dssp EEEEEGGGTEEEEEEHHHHHHHHHHTC--CEEE-------------ECCHHHHHHHHHHCTTSEEEEEECSCHHHHHHHH
T ss_pred eehhhcCchhhcCCcHHHHHHHHHcCC--eEEE-------------EeCHHHHHHHHHhcCCcEEEEEECCCHHHHHHHH
Confidence 2 1 1 011222222221110 0000 0112233333322222 889999999999999
Q ss_pred CCc----CHHHHHHHHHHHHHHH
Q psy1503 242 SAV----DMHVGKHLFEDCISGC 260 (265)
Q Consensus 242 s~L----D~~~~~~i~~~~i~~~ 260 (265)
+++ |+...+++.+ .+..+
T Consensus 152 ~~l~~~~d~~~~~~l~~-~l~~l 173 (207)
T 1znw_A 152 IGRGTETADVIQRRLDT-ARIEL 173 (207)
T ss_dssp HTTSCSCHHHHHHHHHH-HHHHH
T ss_pred HhcCCCCHHHHHHHHHH-HHHHH
Confidence 998 6777777654 34333
No 92
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=99.67 E-value=1.4e-18 Score=146.40 Aligned_cols=111 Identities=19% Similarity=0.285 Sum_probs=81.0
Q ss_pred CcEEEEEcCCCChHHHHHHHHhcCcCCCccEEEEcC-----------eEEEEecCCCCccccHHHHHhcCCcccHHHHHH
Q psy1503 117 KQLACIIGAIGAGKTSLLHIILNELRISSGKVSLGG-----------TVSYASQEPWIFAATIRQNILFGLPYLRRRYAD 185 (265)
Q Consensus 117 G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g-----------~i~~v~Q~~~l~~~ti~eni~~~~~~~~~~~~~ 185 (265)
|++++|+||||||||||+++|+|+++ ++| |.++| .++|++|+. .++ ++|+..
T Consensus 1 G~~i~i~G~nG~GKTTll~~l~g~~~-~~G-i~~~g~~~~~~~~~~~~ig~~~~~~---~g~-~~~l~~----------- 63 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTLIHKASEVLK-SSG-VPVDGFYTEEVRQGGRRIGFDVVTL---SGT-RGPLSR----------- 63 (189)
T ss_dssp CCCEEEESCCSSCHHHHHHHHHHHHH-HTT-CCCEEEECCEEETTSSEEEEEEEET---TSC-EEEEEE-----------
T ss_pred CCEEEEECCCCChHHHHHHHHHhhcc-cCC-EEEcCEecchhHhhhceEEEEEEec---ccc-eehhhc-----------
Confidence 78999999999999999999999999 899 87766 268888864 221 111100
Q ss_pred HHHHhcchhHHhcCCCCCccccCCCCCCCCHHHHHHH-HHHH---HHccCCCEEEEeC--CCCCcCHHHHHHH
Q psy1503 186 VIRVCALQDDFDSLPNGDFTVVGERGASLSGGQKARI-NLAR---AVYKNADIYLLDD--PLSAVDMHVGKHL 252 (265)
Q Consensus 186 ~~~~~~l~~~i~~l~~g~~t~vg~~g~~LSgGqrqRi-alAR---al~~~~~illLDE--p~s~LD~~~~~~i 252 (265)
+. ...-+......+++.+..+|+|||+++ +|++ |+..+|+++|||| |+..+|....+.+
T Consensus 64 ------~~--~~~~~~~~~~~v~~~~~~ls~~er~~~~~l~~~a~A~~~~~dvlilDE~g~~~~~~~~~~~~l 128 (189)
T 2i3b_A 64 ------VG--LEPPPGKRECRVGQYVVDLTSFEQLALPVLRNADCSSGPGQRVCVIDEIGKMELFSQLFIQAV 128 (189)
T ss_dssp ------CC--CCCCSSSCCEESSSSEECHHHHHTTTTTTTCCCCCCCSSCCCCEEECCCSTTTTTCSHHHHHH
T ss_pred ------cc--ccCCccccccccceEEEcchHHHHHHHHHHhhhhHhhccCCCEEEEeCCCccccccHHHHHHH
Confidence 00 000001122368888999999999998 5565 6899999999999 8988998866555
No 93
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=99.67 E-value=4.3e-16 Score=142.01 Aligned_cols=50 Identities=20% Similarity=0.355 Sum_probs=42.9
Q ss_pred CCCCCCHHHHH------HHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHH
Q psy1503 210 RGASLSGGQKA------RINLARAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGC 260 (265)
Q Consensus 210 ~g~~LSgGqrq------RialARal~~~~~illLDEp~s~LD~~~~~~i~~~~i~~~ 260 (265)
....||||||| |+++|||++.+|+++||||||++||+.....+++ .+..+
T Consensus 245 ~~~~lS~G~~~~~~la~~l~~a~~l~~~p~~lllDEp~~~LD~~~~~~l~~-~l~~~ 300 (339)
T 3qkt_A 245 PLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLIT-IMERY 300 (339)
T ss_dssp CGGGSCHHHHHHHHHHHHHHHHHHTTTTTCEEEEECCCTTCCHHHHHHHHH-HHHHT
T ss_pred ChHHCCHHHHHHHHHHHHHHHHHHhcCCCCEEEEECCCCCCCHHHHHHHHH-HHHHH
Confidence 45789999999 6788899999999999999999999999988866 34443
No 94
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=99.66 E-value=3.4e-17 Score=163.74 Aligned_cols=125 Identities=14% Similarity=0.104 Sum_probs=89.3
Q ss_pred CcEEEEeEEEEeCCCCCCcceeeceEEEcCCcEEEEEcCCCChHHHHHHHHhcCcC-CCccEEEEcC--eEEEEecCCCC
Q psy1503 87 GHVSLDNVTAQWSLQNADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELR-ISSGKVSLGG--TVSYASQEPWI 163 (265)
Q Consensus 87 ~~i~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~-~~~G~i~~~g--~i~~v~Q~~~l 163 (265)
+.+.+++..+-.-.....++++|++|+ |++++|+||||||||||+++|+|+.. +..|.+.-.. .+++++| +
T Consensus 549 ~~i~i~~~rHP~le~~~~~vl~disl~---g~i~~I~GpNGsGKSTlLr~iagl~~~~~~G~~vpa~~~~i~~v~~---i 622 (765)
T 1ewq_A 549 DRLQIRAGRHPVVERRTEFVPNDLEMA---HELVLITGPNMAGKSTFLRQTALIALLAQVGSFVPAEEAHLPLFDG---I 622 (765)
T ss_dssp SSEEEEEECCTTGGGTSCCCCEEEEES---SCEEEEESCSSSSHHHHHHHHHHHHHHHTTTCCBSSSEEEECCCSE---E
T ss_pred CcEEEEEeECceEccCCceEeeeccCC---CcEEEEECCCCCChHHHHHHHHhhhhhcccCceeehhccceeeHHH---h
Confidence 458888774322000235789999999 99999999999999999999999874 6777652111 2555555 3
Q ss_pred cc-ccHHHHHhcCCcccHHHHHHHHHHhcchhHHhcCCCCCccccCCCCCCCCHHHHHHHHHHHHH--ccCCCEEEEeCC
Q psy1503 164 FA-ATIRQNILFGLPYLRRRYADVIRVCALQDDFDSLPNGDFTVVGERGASLSGGQKARINLARAV--YKNADIYLLDDP 240 (265)
Q Consensus 164 ~~-~ti~eni~~~~~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~vg~~g~~LSgGqrqRialARal--~~~~~illLDEp 240 (265)
|. .++.||+.. .+|+|++|++.+|+++ +.+|+++|||||
T Consensus 623 ~~~~~~~d~l~~--------------------------------------g~S~~~~e~~~la~il~~a~~p~LlLLDEp 664 (765)
T 1ewq_A 623 YTRIGASDDLAG--------------------------------------GKSTFMVEMEEVALILKEATENSLVLLDEV 664 (765)
T ss_dssp EEECCC--------------------------------------------CCSHHHHHHHHHHHHHHHCCTTEEEEEEST
T ss_pred hccCCHHHHHHh--------------------------------------cccHHHHHHHHHHHHHHhccCCCEEEEECC
Confidence 43 255554322 3689999999999999 999999999999
Q ss_pred ---CCCcCHHHH-HHHHHH
Q psy1503 241 ---LSAVDMHVG-KHLFED 255 (265)
Q Consensus 241 ---~s~LD~~~~-~~i~~~ 255 (265)
|+++|.... ..+.+.
T Consensus 665 grGTs~lD~~~~~~~i~~~ 683 (765)
T 1ewq_A 665 GRGTSSLDGVAIATAVAEA 683 (765)
T ss_dssp TTTSCHHHHHHHHHHHHHH
T ss_pred CCCCCCcCHHHHHHHHHHH
Confidence 999998875 345443
No 95
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=99.65 E-value=9e-17 Score=147.32 Aligned_cols=150 Identities=15% Similarity=0.144 Sum_probs=97.0
Q ss_pred CcEEEEeEEEEeCCCCCCcceeeceEEEcCCcEEEEEcCCCChHHHHHHHHhcCcCCCccEEEEcCe----EEEEecCCC
Q psy1503 87 GHVSLDNVTAQWSLQNADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSLGGT----VSYASQEPW 162 (265)
Q Consensus 87 ~~i~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g~----i~~v~Q~~~ 162 (265)
..++.+++++.|+. +..+++++ |+|.+|++++|+||||||||||+++|+|+.+|+.|.|.+.|. +......
T Consensus 44 ~~i~~~~l~~~~~t--g~~ald~l-l~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~~~~g~i~~~G~~~~ev~~~i~~-- 118 (347)
T 2obl_A 44 DPLLRQVIDQPFIL--GVRAIDGL-LTCGIGQRIGIFAGSGVGKSTLLGMICNGASADIIVLALIGERGREVNEFLAL-- 118 (347)
T ss_dssp CSTTCCCCCSEECC--SCHHHHHH-SCEETTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEESCCHHHHHHHHTT--
T ss_pred CCeeecccceecCC--CCEEEEee-eeecCCCEEEEECCCCCCHHHHHHHHhcCCCCCEEEEEEecccHHHHHHHHHh--
Confidence 35788899999963 35689999 999999999999999999999999999999999998877652 0000000
Q ss_pred CccccHHHH-HhcCCc---ccHHHHHHHHHHhcchhHHhcCCCCCcc-ccCCCCCCCCHHHHHHHHHHHHHccCCCEEEE
Q psy1503 163 IFAATIRQN-ILFGLP---YLRRRYADVIRVCALQDDFDSLPNGDFT-VVGERGASLSGGQKARINLARAVYKNADIYLL 237 (265)
Q Consensus 163 l~~~ti~en-i~~~~~---~~~~~~~~~~~~~~l~~~i~~l~~g~~t-~vg~~g~~LSgGqrqRialARal~~~~~illL 237 (265)
+.....++ +.+... ....++......+.+.+.+.. .+.+. .+-+...+||+|| ||+++| +.+|++
T Consensus 119 -~~~~~~~~~v~~~~~~~~~~~~r~~~~~~~~~~ae~~~~--~~~~vl~~ld~~~~lS~g~-r~v~la---l~~p~~--- 188 (347)
T 2obl_A 119 -LPQSTLSKCVLVVTTSDRPALERMKAAFTATTIAEYFRD--QGKNVLLMMDSVTRYARAA-RDVGLA---SGEPDV--- 188 (347)
T ss_dssp -SCHHHHTTEEEEEECTTSCHHHHHHHHHHHHHHHHHHHT--TTCEEEEEEETHHHHHHHH-HHHHHH---TTCCCC---
T ss_pred -hhhhhhhceEEEEECCCCCHHHHHHHHHHHHHHHHHHHh--ccccHHHHHhhHHHHHHHH-HHHHHH---cCCCCc---
Confidence 00000000 111100 012333333333444333222 12211 1113467899999 899999 588887
Q ss_pred eCCCCCcCHHHHHHHHH
Q psy1503 238 DDPLSAVDMHVGKHLFE 254 (265)
Q Consensus 238 DEp~s~LD~~~~~~i~~ 254 (265)
|+|+|+.....+.+
T Consensus 189 ---t~Gldp~~~~~l~~ 202 (347)
T 2obl_A 189 ---RGGFPPSVFSSLPK 202 (347)
T ss_dssp ---BTTBCHHHHHHHHH
T ss_pred ---ccCCCHHHHHHHHH
Confidence 99999999888754
No 96
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=99.65 E-value=8.9e-17 Score=154.64 Aligned_cols=118 Identities=17% Similarity=0.168 Sum_probs=86.3
Q ss_pred eEEEcCCcEEEEEcCCCChHHHHHHHHhcCcCCCccEEEEcCeEEEEecCCCCccccHHHHHh-cCCcccHHHHHHHHHH
Q psy1503 111 SITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSLGGTVSYASQEPWIFAATIRQNIL-FGLPYLRRRYADVIRV 189 (265)
Q Consensus 111 sl~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g~i~~v~Q~~~l~~~ti~eni~-~~~~~~~~~~~~~~~~ 189 (265)
+..+++|++++|+||||||||||++.++|...|. |+ ..+.+++|++. ..++++.. ++.. .+ +. ..
T Consensus 275 ~g~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~~~-G~----~vi~~~~ee~~---~~l~~~~~~~g~~--~~---~~-~~ 340 (525)
T 1tf7_A 275 GGGFFKDSIILATGATGTGKTLLVSRFVENACAN-KE----RAILFAYEESR---AQLLRNAYSWGMD--FE---EM-ER 340 (525)
T ss_dssp TSSEESSCEEEEEECTTSSHHHHHHHHHHHHHTT-TC----CEEEEESSSCH---HHHHHHHHTTSCC--HH---HH-HH
T ss_pred CCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHhC-CC----CEEEEEEeCCH---HHHHHHHHHcCCC--HH---HH-Hh
Confidence 4589999999999999999999999999999885 53 11567788762 35555542 3321 11 11 11
Q ss_pred hcchhHHhcCCCCCccccCCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCcCHH-----HHHHHHH
Q psy1503 190 CALQDDFDSLPNGDFTVVGERGASLSGGQKARINLARAVYKNADIYLLDDPLSAVDMH-----VGKHLFE 254 (265)
Q Consensus 190 ~~l~~~i~~l~~g~~t~vg~~g~~LSgGqrqRialARal~~~~~illLDEp~s~LD~~-----~~~~i~~ 254 (265)
. |...........|||||+||+++||++..+|+++|+| ||++||.. ..+.+++
T Consensus 341 ~-----------g~~~~~~~~p~~LS~g~~q~~~~a~~l~~~p~llilD-p~~~Ld~~~~~~~~~~~i~~ 398 (525)
T 1tf7_A 341 Q-----------NLLKIVCAYPESAGLEDHLQIIKSEINDFKPARIAID-SLSALARGVSNNAFRQFVIG 398 (525)
T ss_dssp T-----------TSEEECCCCGGGSCHHHHHHHHHHHHHTTCCSEEEEE-CHHHHTSSSCHHHHHHHHHH
T ss_pred C-----------CCEEEEEeccccCCHHHHHHHHHHHHHhhCCCEEEEc-ChHHHHhhCChHHHHHHHHH
Confidence 1 1122233455789999999999999999999999999 99999998 7666644
No 97
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=99.64 E-value=1.2e-16 Score=162.11 Aligned_cols=139 Identities=14% Similarity=0.168 Sum_probs=88.3
Q ss_pred cEEEEeEEEEeC----CCCCCcceeeceEEEcCCcEEEEEcCCCChHHHHHHHHhcCcCCC-ccEEEEcCeEEEEecCCC
Q psy1503 88 HVSLDNVTAQWS----LQNADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRIS-SGKVSLGGTVSYASQEPW 162 (265)
Q Consensus 88 ~i~~~~~~~~~~----~~~~~~~l~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~-~G~i~~~g~i~~v~Q~~~ 162 (265)
.+.+++..+-.= ......+++|++|++++|++++|+||||||||||++++.+..-.. .| .++|++..
T Consensus 640 ~i~i~~~rHP~le~~~~~~~~~V~ndvsl~~~~g~i~~ItGPNGaGKSTlLr~i~~i~~~aq~g--------~~vpa~~~ 711 (918)
T 3thx_B 640 KIVIKNGRHPVIDVLLGEQDQYVPNNTDLSEDSERVMIITGPNMGGKSSYIKQVALITIMAQIG--------SYVPAEEA 711 (918)
T ss_dssp EEEEEEECCHHHHHHTCSCSSSCCEEEEECTTSCCEEEEESCCCHHHHHHHHHHHHHHHHHHHT--------CCBSSSEE
T ss_pred cEEEEeccchhhhhhhccCCceecccccccCCCCeEEEEECCCCCchHHHHHHHHHHHHHhhcC--------ccccchhh
Confidence 577776654320 112467999999999999999999999999999999986532110 01 01111100
Q ss_pred CccccHHHHHhcCCcccHHHHHHHHHHhcchhHHhcCCCCCccccCCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCC
Q psy1503 163 IFAATIRQNILFGLPYLRRRYADVIRVCALQDDFDSLPNGDFTVVGERGASLSGGQKARINLARAVYKNADIYLLDDPLS 242 (265)
Q Consensus 163 l~~~ti~eni~~~~~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~vg~~g~~LSgGqrqRialARal~~~~~illLDEp~s 242 (265)
-+ .+.+++ | ...++.+. +..+...+|+|++|+..++++ +.+|+++|||||++
T Consensus 712 ~i--~~~d~i-~-------------~~ig~~d~-----------l~~~~stfs~em~~~~~il~~-a~~p~LlLLDEP~~ 763 (918)
T 3thx_B 712 TI--GIVDGI-F-------------TRMGAADN-----------IYKGRSTFMEELTDTAEIIRK-ATSQSLVILDELGR 763 (918)
T ss_dssp EE--ECCSEE-E-------------EEC---------------------CCHHHHHHHHHHHHHH-CCTTCEEEEESTTT
T ss_pred hh--hHHHHH-H-------------HhCChHHH-----------HHHhHHHhhHHHHHHHHHHHh-ccCCCEEEEeCCCC
Confidence 00 000000 0 00001111 112335799999999999999 79999999999999
Q ss_pred CcCHHHHHHHHHHHHHHHhh
Q psy1503 243 AVDMHVGKHLFEDCISGCLT 262 (265)
Q Consensus 243 ~LD~~~~~~i~~~~i~~~l~ 262 (265)
|+|+.....+....+..+.+
T Consensus 764 GlD~~~~~~i~~~il~~L~~ 783 (918)
T 3thx_B 764 GTSTHDGIAIAYATLEYFIR 783 (918)
T ss_dssp TSCHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHH
Confidence 99999998887666655543
No 98
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=99.63 E-value=5e-17 Score=149.07 Aligned_cols=108 Identities=15% Similarity=0.190 Sum_probs=76.5
Q ss_pred cceeec-eEEEcCCcEEEEEcCCCChHHHHHHHHhcCc--CCCc----cE-EEEcCe-------EEEEecCCCCccccHH
Q psy1503 105 LTLNAV-SITFKPKQLACIIGAIGAGKTSLLHIILNEL--RISS----GK-VSLGGT-------VSYASQEPWIFAATIR 169 (265)
Q Consensus 105 ~~l~~i-sl~i~~G~~~~ivG~~GsGKSTLl~~l~g~~--~~~~----G~-i~~~g~-------i~~v~Q~~~l~~~ti~ 169 (265)
+.|+.+ .+.|++|++++|+||||||||||++.+++.. +|++ |+ |++++. +++++|.+.++..++.
T Consensus 118 ~~LD~lL~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~~~~~i~~i~q~~~~~~~~v~ 197 (349)
T 1pzn_A 118 KSLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPERIREIAQNRGLDPDEVL 197 (349)
T ss_dssp HHHHHHHTSSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCCCHHHHHHHHHTTTCCHHHHG
T ss_pred HHHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCCCHHHHHHHHHHcCCCHHHHh
Confidence 457665 7899999999999999999999999999998 6666 45 555441 2223333333322333
Q ss_pred HHHhcCCcccHHHHHHHHHHhcchhHHhcCCCCCccccCCCCCCCCHHHHHHHHHHHHHc-------cCCCEEEEeCCCC
Q psy1503 170 QNILFGLPYLRRRYADVIRVCALQDDFDSLPNGDFTVVGERGASLSGGQKARINLARAVY-------KNADIYLLDDPLS 242 (265)
Q Consensus 170 eni~~~~~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~vg~~g~~LSgGqrqRialARal~-------~~~~illLDEp~s 242 (265)
+||.+... .-|.+|+|++.++++++ .+|+++|+||||+
T Consensus 198 ~ni~~~~~-----------------------------------~~~~~~~~~l~~~~~~~~~lS~G~~~~~llIlDs~ta 242 (349)
T 1pzn_A 198 KHIYVARA-----------------------------------FNSNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTS 242 (349)
T ss_dssp GGEEEEEC-----------------------------------CSHHHHHHHHHHHHHHHHHSSSSSSCEEEEEEETSST
T ss_pred hCEEEEec-----------------------------------CChHHHHHHHHHHHHHHHHhccccCCCCEEEEeCchH
Confidence 33322110 01567888888888888 6899999999999
Q ss_pred CcCHH
Q psy1503 243 AVDMH 247 (265)
Q Consensus 243 ~LD~~ 247 (265)
.+|+.
T Consensus 243 ~ld~~ 247 (349)
T 1pzn_A 243 HFRSE 247 (349)
T ss_dssp THHHH
T ss_pred hhhhh
Confidence 99986
No 99
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.63 E-value=7.1e-18 Score=158.16 Aligned_cols=134 Identities=18% Similarity=0.130 Sum_probs=82.1
Q ss_pred CcEEEEeEEEEeCCCCCCcceeeceEEEcCCcEEEEEcCCCChHHHHHHHHhcCcCCCcc--EEEEc-------CeEEEE
Q psy1503 87 GHVSLDNVTAQWSLQNADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSG--KVSLG-------GTVSYA 157 (265)
Q Consensus 87 ~~i~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G--~i~~~-------g~i~~v 157 (265)
+.|.++|++++|+. ..++++++|+| +|+|+||||||||+++|+|...+..| .+.++ ..++++
T Consensus 10 ~~l~~~~l~~~y~~---~~vl~~vsf~I------~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~t~~~~~i~~v 80 (418)
T 2qag_C 10 GYVGFANLPNQVYR---KSVKRGFEFTL------MVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVL 80 (418)
T ss_dssp -----CCCCCCTTT---TTCC-CCCEEE------EEECCTTSSHHHHHHHHTTCCCCCCCCCSCC-----CCEEEEEECC
T ss_pred CcEEEEecceeECC---EEEecCCCEEE------EEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCccceeeeeEEEE
Confidence 46899999999953 46899999998 99999999999999999999875444 11111 137899
Q ss_pred ecCCCCc-cccHHHHHhcCCcccHH-HHHHHHHHhcchhHHhcCCCCCccccCCCCCCCCHHHHHHHHHHHHHccCCC--
Q psy1503 158 SQEPWIF-AATIRQNILFGLPYLRR-RYADVIRVCALQDDFDSLPNGDFTVVGERGASLSGGQKARINLARAVYKNAD-- 233 (265)
Q Consensus 158 ~Q~~~l~-~~ti~eni~~~~~~~~~-~~~~~~~~~~l~~~i~~l~~g~~t~vg~~g~~LSgGqrqRialARal~~~~~-- 233 (265)
+|++.++ ..|+.||+.++...... .+..+. +.+. ..++.+++||++||||++.+|+
T Consensus 81 ~q~~~~~~~Ltv~Dt~g~~~~~~~~~~~~~i~------~~i~--------------~~~~~~l~qr~~IaRal~~d~~~~ 140 (418)
T 2qag_C 81 IKEGGVQLLLTIVDTPGFGDAVDNSNCWQPVI------DYID--------------SKFEDYLNAESRVNRRQMPDNRVQ 140 (418)
T ss_dssp ------CEEEEEEECC-----------CHHHH------HHHH--------------HHHHHHTTTSCC-CCCCCCCC-CC
T ss_pred EecCCcccceeeeechhhhhhccchhhHHHHH------HHHH--------------HHHHHHHHHHHHHHHHhccCCCee
Confidence 9988776 56999998886532211 111111 1121 1355677789999999999999
Q ss_pred -EEEEeCCC-CCcCHHHH
Q psy1503 234 -IYLLDDPL-SAVDMHVG 249 (265)
Q Consensus 234 -illLDEp~-s~LD~~~~ 249 (265)
++++|||| ++||+...
T Consensus 141 vlL~ldePt~~~L~~~d~ 158 (418)
T 2qag_C 141 CCLYFIAPSGHGLKPLDI 158 (418)
T ss_dssp EEEEECCC-CCSCCHHHH
T ss_pred EEEEEecCcccCCCHHHH
Confidence 99999999 69998763
No 100
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=99.62 E-value=2.4e-18 Score=158.51 Aligned_cols=137 Identities=15% Similarity=0.110 Sum_probs=97.7
Q ss_pred EEEeEEEE---eCCCCCCcce---------eeceEEEcCCcEEEEEcCCCChHHHHHHHHhcCcCCCccEEEEcC-----
Q psy1503 90 SLDNVTAQ---WSLQNADLTL---------NAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSLGG----- 152 (265)
Q Consensus 90 ~~~~~~~~---~~~~~~~~~l---------~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g----- 152 (265)
+|++++|+ |+.. ..++| ++++|.+++|+.++|+||||||||||+++|+|+++|++|.|.++|
T Consensus 137 ~f~~v~f~~~~Y~~~-~~~vL~~~~~~~~~~~l~~~i~~G~~i~ivG~sGsGKSTll~~l~~~~~~~~g~I~ie~~~e~~ 215 (361)
T 2gza_A 137 FFKHVRPMSKSLTPF-EQELLALKEAGDYMSFLRRAVQLERVIVVAGETGSGKTTLMKALMQEIPFDQRLITIEDVPELF 215 (361)
T ss_dssp TTSCCCCSCSCCCHH-HHHHHHHHHHTCHHHHHHHHHHTTCCEEEEESSSSCHHHHHHHHHTTSCTTSCEEEEESSSCCC
T ss_pred CcCccccccccccch-hHHHHhhhhhHHHHHHHHHHHhcCCEEEEECCCCCCHHHHHHHHHhcCCCCceEEEECCccccC
Confidence 67788888 7421 12345 999999999999999999999999999999999999999999986
Q ss_pred ------eEEEEe-cCCCC---ccccHHHHHhcCCcccHHH-HHHHHHHhcchhHHhcCCCCCccccCCCCCCCCHHHHHH
Q psy1503 153 ------TVSYAS-QEPWI---FAATIRQNILFGLPYLRRR-YADVIRVCALQDDFDSLPNGDFTVVGERGASLSGGQKAR 221 (265)
Q Consensus 153 ------~i~~v~-Q~~~l---~~~ti~eni~~~~~~~~~~-~~~~~~~~~l~~~i~~l~~g~~t~vg~~g~~LSgGqrqR 221 (265)
.++|++ |++.+ +..|+++||.++.....+. +...++.....+.+..++.|+.|.+++-..+-+.+..+|
T Consensus 216 ~~~~~~~v~~v~~q~~~~~~~~~~t~~~~i~~~l~~~pd~~l~~e~r~~~~~~~l~~l~~g~~~~l~t~H~~~~~~~~~R 295 (361)
T 2gza_A 216 LPDHPNHVHLFYPSEAKEEENAPVTAATLLRSCLRMKPTRILLAELRGGEAYDFINVAASGHGGSITSCHAGSCELTFER 295 (361)
T ss_dssp CTTCSSEEEEECC----------CCHHHHHHHHTTSCCSEEEESCCCSTHHHHHHHHHHTTCCSCEEEEECSSHHHHHHH
T ss_pred ccccCCEEEEeecCccccccccccCHHHHHHHHHhcCCCEEEEcCchHHHHHHHHHHHhcCCCeEEEEECCCCHHHHHHH
Confidence 289999 88775 6779999998764321100 000011122334566778888888887777778899999
Q ss_pred HHHHHH
Q psy1503 222 INLARA 227 (265)
Q Consensus 222 ialARa 227 (265)
+.....
T Consensus 296 l~~l~~ 301 (361)
T 2gza_A 296 LALMVL 301 (361)
T ss_dssp HHHHHT
T ss_pred HHHHHh
Confidence 987653
No 101
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=99.62 E-value=2.6e-16 Score=141.75 Aligned_cols=116 Identities=12% Similarity=0.047 Sum_probs=81.9
Q ss_pred CCcEEEEEcCCCChHHHHHHHHhcCcCCCccEEEEcCe-------------------EEEEecCCCCcc-ccHHHHHhcC
Q psy1503 116 PKQLACIIGAIGAGKTSLLHIILNELRISSGKVSLGGT-------------------VSYASQEPWIFA-ATIRQNILFG 175 (265)
Q Consensus 116 ~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g~-------------------i~~v~Q~~~l~~-~ti~eni~~~ 175 (265)
+|++++|+||||||||||++.|+|+++|++|+|.+.|. ++|++|++.+++ .++.+|+.++
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~~~g~V~l~g~D~~r~~a~~ql~~~~~~~~i~~v~q~~~~~p~~~v~~~v~~~ 180 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDSAALAYDAVQAM 180 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECCCCSSTTTTHHHHHHHHHHTCCEECCCTTCCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeecCCChhHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHHHH
Confidence 68999999999999999999999999999999998762 789999988776 4888888643
Q ss_pred CcccHHHHHHHHHHhcchhHHhcCCCCCccccCCCCCCCCHHHHHHHHHHHHHccCCC--EEEEeCCCCCcCHHH
Q psy1503 176 LPYLRRRYADVIRVCALQDDFDSLPNGDFTVVGERGASLSGGQKARINLARAVYKNAD--IYLLDDPLSAVDMHV 248 (265)
Q Consensus 176 ~~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~vg~~g~~LSgGqrqRialARal~~~~~--illLDEp~s~LD~~~ 248 (265)
.. .+.+..+-..+...+ .....++..++||++||||+..+|+ ++.|| |+++.+...
T Consensus 181 ~~------------~~~d~~llDt~G~~~----~~~~~~~eLs~~r~~iaRal~~~P~~~lLvLD-a~t~~~~~~ 238 (304)
T 1rj9_A 181 KA------------RGYDLLFVDTAGRLH----TKHNLMEELKKVKRAIAKADPEEPKEVWLVLD-AVTGQNGLE 238 (304)
T ss_dssp HH------------HTCSEEEECCCCCCT----TCHHHHHHHHHHHHHHHHHCTTCCSEEEEEEE-TTBCTHHHH
T ss_pred Hh------------CCCCEEEecCCCCCC----chHHHHHHHHHHHHHHHHhhcCCCCeEEEEEc-HHHHHHHHH
Confidence 10 011111111111111 1112356677999999999999999 55576 666655443
No 102
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=99.60 E-value=1.9e-16 Score=141.03 Aligned_cols=122 Identities=13% Similarity=0.113 Sum_probs=75.5
Q ss_pred cceeeceEEEcCCcEEEEEcCCCChHHHHHHHHhcCcCCCcc-EEEEcCeEEEEecCCCCccccHHHHHhc---CCcc--
Q psy1503 105 LTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSG-KVSLGGTVSYASQEPWIFAATIRQNILF---GLPY-- 178 (265)
Q Consensus 105 ~~l~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G-~i~~~g~i~~v~Q~~~l~~~ti~eni~~---~~~~-- 178 (265)
++|+++++.+++|++++|+||||||||||++.|+|.+.|.+| .|. |+..+.. ...++..+.. +...
T Consensus 23 ~~Ld~i~~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~------~~~~e~~--~~~~~~r~~~~~~~~~~~~ 94 (296)
T 1cr0_A 23 TGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVG------LAMLEES--VEETAEDLIGLHNRVRLRQ 94 (296)
T ss_dssp TTHHHHHCSBCTTCEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEE------EEESSSC--HHHHHHHHHHHHTTCCGGG
T ss_pred HHHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEE------EEeCcCC--HHHHHHHHHHHHcCCChhh
Confidence 479999999999999999999999999999999999999877 443 3332210 0112222111 1110
Q ss_pred ---------cHHHHHHHHHHhcchhHHhcCCCCCccccCCCCCCCCHHH-HHHHHHHHHHccCCCEEEEeCCCCCc
Q psy1503 179 ---------LRRRYADVIRVCALQDDFDSLPNGDFTVVGERGASLSGGQ-KARINLARAVYKNADIYLLDDPLSAV 244 (265)
Q Consensus 179 ---------~~~~~~~~~~~~~l~~~i~~l~~g~~t~vg~~g~~LSgGq-rqRialARal~~~~~illLDEp~s~L 244 (265)
..+.+.+..+. .+...+. .+.+...++|.+| +||+. |+++..+|+++|+|||++.+
T Consensus 95 ~~~l~~~~~~~~~~~~~~~~-----~l~~~~l----~i~~~~~~~~~~~l~~~~~-a~~~~~~p~llilDept~~~ 160 (296)
T 1cr0_A 95 SDSLKREIIENGKFDQWFDE-----LFGNDTF----HLYDSFAEAETDRLLAKLA-YMRSGLGCDVIILDHISIVV 160 (296)
T ss_dssp CHHHHHHHHHHTHHHHHHHH-----HHSSSCE----EEECCCCSCCHHHHHHHHH-HHHHTTCCSEEEEEEEC---
T ss_pred ccccccCCCCHHHHHHHHHH-----HhccCCE----EEECCCCCCCHHHHHHHHH-HHHHhcCCCEEEEcCccccC
Confidence 01111111111 1111111 1223335689998 67777 99999999999999999943
No 103
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=99.60 E-value=5.7e-18 Score=165.79 Aligned_cols=139 Identities=20% Similarity=0.238 Sum_probs=78.2
Q ss_pred cEEEEeEEEEeCCCCCCcceeec----------eEEEcCCcEEEEEcCCCChHHHHHHHHhcCcCC-CccEEEEcCe---
Q psy1503 88 HVSLDNVTAQWSLQNADLTLNAV----------SITFKPKQLACIIGAIGAGKTSLLHIILNELRI-SSGKVSLGGT--- 153 (265)
Q Consensus 88 ~i~~~~~~~~~~~~~~~~~l~~i----------sl~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~-~~G~i~~~g~--- 153 (265)
.+.++|+++.|+.. .+++|+.+ +++++. ++|+||||||||||+++|+|++.| ++|.|+++|.
T Consensus 10 ~i~~~~l~~~~~~~-~r~ll~~id~l~~~gv~~~l~lp~---iaIvG~nGsGKSTLL~~I~Gl~~P~~sG~vt~~g~~i~ 85 (608)
T 3szr_A 10 SVAENNLCSQYEEK-VRPCIDLIDSLRALGVEQDLALPA---IAVIGDQSSGKSSVLEALSGVALPRGSGIVTRCPLVLK 85 (608)
T ss_dssp ----------CHHH-HHHHHHHHHHHHHHSCCSSCCCCC---EECCCCTTSCHHHHHHHHHSCC-------CCCSCEEEE
T ss_pred hhhhhhhhHHHHHH-HHHHHHHHHHHHhCCCCCcccCCe---EEEECCCCChHHHHHHHHhCCCCCCCCCeEEEcCEEEE
Confidence 57899999999532 23344433 366665 999999999999999999999988 7999987762
Q ss_pred -------------EEEEecCCCCcc-ccHHHHHhcCCcccHHHHHHHHHHhcchhHHhcCCCCCccccCCCCCCCCHHHH
Q psy1503 154 -------------VSYASQEPWIFA-ATIRQNILFGLPYLRRRYADVIRVCALQDDFDSLPNGDFTVVGERGASLSGGQK 219 (265)
Q Consensus 154 -------------i~~v~Q~~~l~~-~ti~eni~~~~~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~vg~~g~~LSgGqr 219 (265)
++|++|++.+++ .||++||.+.. ...+. .. ..+| +
T Consensus 86 ~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~i~~~~-----------~~~~~------~~-----------~~~s---~ 134 (608)
T 3szr_A 86 LKKLVNEDKWRGKVSYQDYEIEISDASEVEKEINKAQ-----------NAIAG------EG-----------MGIS---H 134 (608)
T ss_dssp EEECSSSSCCEEEESCC---CCCCCHHHHHTTHHHHH-----------HHHHC------SS-----------SCCC---S
T ss_pred EecCCccccceeEEeeecccccCCCHHHHHHHHHHHH-----------HHhcC------Cc-----------cccc---h
Confidence 789999998886 59999986521 00000 00 0111 1
Q ss_pred HHHHHHHHHccCCCEEEEeCC------CCCcCHHHHHHHHHHHHHHHhh
Q psy1503 220 ARINLARAVYKNADIYLLDDP------LSAVDMHVGKHLFEDCISGCLT 262 (265)
Q Consensus 220 qRialARal~~~~~illLDEp------~s~LD~~~~~~i~~~~i~~~l~ 262 (265)
+++.++.+....|+++|+||| |++||+.....+.+ .+..+++
T Consensus 135 ~~i~l~i~~~~~p~LlLlDePGi~~~~t~~LD~~~~~~i~~-li~~~l~ 182 (608)
T 3szr_A 135 ELITLEISSRDVPDLTLIDLPGITRVAVGNQPADIGYKIKT-LIKKYIQ 182 (608)
T ss_dssp CCEEEEEEESSSCCEEEEECCC------CCSSCSHHHHHHH-HHHHHTT
T ss_pred HHHHHHhcCCCCCceeEeeCCCccccccCCCCHHHHHHHHH-HHHHHHh
Confidence 223333444468999999999 99999988877754 4455443
No 104
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.60 E-value=3.4e-16 Score=146.71 Aligned_cols=157 Identities=17% Similarity=0.153 Sum_probs=97.8
Q ss_pred cEEEEeEEEEeCCCCCCcceeeceEEEcCCcE--EEEEcCCCChHHHHHHHHhcCcC---C----CccEEEEcCeEEEEe
Q psy1503 88 HVSLDNVTAQWSLQNADLTLNAVSITFKPKQL--ACIIGAIGAGKTSLLHIILNELR---I----SSGKVSLGGTVSYAS 158 (265)
Q Consensus 88 ~i~~~~~~~~~~~~~~~~~l~~isl~i~~G~~--~~ivG~~GsGKSTLl~~l~g~~~---~----~~G~i~~~g~i~~v~ 158 (265)
.+++++ +++|++ .+ |+++||++++|++ ++|+||||||||||+++|+|+.- + ..|.. .. .++|++
T Consensus 16 ~l~~~~-~~~y~~---~~-L~~vsl~i~~Gei~~vaLvG~nGaGKSTLln~L~G~~l~g~~~~~~~~~~~-~~-~i~~v~ 88 (427)
T 2qag_B 16 TVPLAG-HVGFDS---LP-DQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTKFEGEPATHTQPGVQ-LQ-SNTYDL 88 (427)
T ss_dssp -CCCCC-CC-CC-----C-HHHHHHSCC-CCEEEEEEECSTTSSSHHHHHHHHTSCC-------CCSSCE-EE-EEEEEE
T ss_pred eEEEee-EEEECC---ee-cCCCceEecCCCeeEEEEECCCCCCHHHHHHHHhCccccCCcCCCCCccce-Ee-eEEEEe
Confidence 455666 777853 34 9999999999999 99999999999999999999841 1 11111 11 499999
Q ss_pred cCCCCcc-ccHHHHHhcCCcccHH-HHHH---HHHHhcchhHHhc-------CCCCCccc-------cCCCCCCCCHHHH
Q psy1503 159 QEPWIFA-ATIRQNILFGLPYLRR-RYAD---VIRVCALQDDFDS-------LPNGDFTV-------VGERGASLSGGQK 219 (265)
Q Consensus 159 Q~~~l~~-~ti~eni~~~~~~~~~-~~~~---~~~~~~l~~~i~~-------l~~g~~t~-------vg~~g~~LSgGqr 219 (265)
|++.++. .|+.||+.++...+.. .+.. .++. .....+.. ++...++. |-+.+..|+-.+
T Consensus 89 Q~~~l~~~ltv~D~~~~g~~~~~~~~~~~i~~~i~~-q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~l~~~D- 166 (427)
T 2qag_B 89 QESNVRLKLTIVSTVGFGDQINKEDSYKPIVEFIDA-QFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHSLKSLD- 166 (427)
T ss_dssp EC--CEEEEEEEEEECCCC-CCHHHHSHHHHHHHHH-HHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC---CHHH-
T ss_pred ecCccccccchhhhhhhhhccccchhhhHHHHHHHH-HHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCCCCHHH-
Confidence 9998874 6999999998653321 1111 1111 01111111 11111221 223345677666
Q ss_pred HHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHH
Q psy1503 220 ARINLARAVYKNADIYLLDDPLSAVDMHVGKHLFED 255 (265)
Q Consensus 220 qRialARal~~~~~illLDEp~s~LD~~~~~~i~~~ 255 (265)
+.++++|..+++|+++|+|+..|.......+++.
T Consensus 167 --ieilk~L~~~~~vI~Vi~KtD~Lt~~E~~~l~~~ 200 (427)
T 2qag_B 167 --LVTMKKLDSKVNIIPIIAKADAISKSELTKFKIK 200 (427)
T ss_dssp --HHHHHHTCSCSEEEEEESCGGGSCHHHHHHHHHH
T ss_pred --HHHHHHHhhCCCEEEEEcchhccchHHHHHHHHH
Confidence 8999999999999999999999988776666554
No 105
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=99.60 E-value=3e-15 Score=152.26 Aligned_cols=130 Identities=14% Similarity=0.055 Sum_probs=87.9
Q ss_pred CcEEEEeEEEEeCCC--CCCcceeeceEEEcCCcEEEEEcCCCChHHHHHHHH--------hcCcCCCccEEEEcCeEEE
Q psy1503 87 GHVSLDNVTAQWSLQ--NADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHII--------LNELRISSGKVSLGGTVSY 156 (265)
Q Consensus 87 ~~i~~~~~~~~~~~~--~~~~~l~~isl~i~~G~~~~ivG~~GsGKSTLl~~l--------~g~~~~~~G~i~~~g~i~~ 156 (265)
..+.+++..+.+-.. ....+++|++|++++|++++|+|||||||||+++++ .|.+-|.++.. ++.
T Consensus 630 ~~i~i~~~rHP~le~~~~~~~v~ndisl~~~~g~i~~ItGpNGsGKSTlLr~ial~~~~aq~G~~vpa~~~~-----~~~ 704 (934)
T 3thx_A 630 GRIILKASRHACVEVQDEIAFIPNDVYFEKDKQMFHIITGPNMGGKSTYIRQTGVIVLMAQIGCFVPCESAE-----VSI 704 (934)
T ss_dssp CEEEEEEECCTTTTTC--CCCCCEEEEEETTTBCEEEEECCTTSSHHHHHHHHHHHHHHHHHTCCBSEEEEE-----EEC
T ss_pred cceEeecCccchhhhcCCceeecccceeecCCCeEEEEECCCCCCHHHHHHHHHHHHHHHhcCCcccccccc-----chH
Confidence 357787776444211 135789999999999999999999999999999999 66655544321 111
Q ss_pred EecCCCCccccHHHHHhcCCcccHHHHHHHHHHhcchhHHhcCCCCCccccCCCCCCCCHHHHHHHHHHHHH--ccCCCE
Q psy1503 157 ASQEPWIFAATIRQNILFGLPYLRRRYADVIRVCALQDDFDSLPNGDFTVVGERGASLSGGQKARINLARAV--YKNADI 234 (265)
Q Consensus 157 v~Q~~~l~~~ti~eni~~~~~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~vg~~g~~LSgGqrqRialARal--~~~~~i 234 (265)
+. .+|. ..++.+.+ ...+|+|++++..+|+++ +.+|++
T Consensus 705 ~d---~i~~-----------------------~ig~~d~l--------------~~~lStf~~e~~~~a~il~~a~~~sL 744 (934)
T 3thx_A 705 VD---CILA-----------------------RVGAGDSQ--------------LKGVSTFMAEMLETASILRSATKDSL 744 (934)
T ss_dssp CS---EEEE-----------------------ECC-----------------------CHHHHHHHHHHHHHHHCCTTCE
T ss_pred HH---HHHH-----------------------hcCchhhH--------------HHhHhhhHHHHHHHHHHHHhccCCcE
Confidence 10 0000 00111111 135788888888888888 899999
Q ss_pred EEEeCCCCCcCHHHHHHHHHHHHHHHh
Q psy1503 235 YLLDDPLSAVDMHVGKHLFEDCISGCL 261 (265)
Q Consensus 235 llLDEp~s~LD~~~~~~i~~~~i~~~l 261 (265)
+|||||++|+|+.....+....+..+.
T Consensus 745 lLLDEp~~GlD~~~~~~i~~~il~~l~ 771 (934)
T 3thx_A 745 IIIDELGRGTSTYDGFGLAWAISEYIA 771 (934)
T ss_dssp EEEESCSCSSCHHHHHHHHHHHHHHHH
T ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHH
Confidence 999999999999998888665555544
No 106
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=99.59 E-value=2.9e-16 Score=133.56 Aligned_cols=47 Identities=21% Similarity=0.446 Sum_probs=34.7
Q ss_pred EEcCCcEEEEEcCCCChHHHHHHHHhcCcCCCccEEEEcCeEEEEec
Q psy1503 113 TFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSLGGTVSYASQ 159 (265)
Q Consensus 113 ~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g~i~~v~Q 159 (265)
-+++|++++|+||||||||||+++|+|.+.+..|....++.+.|+..
T Consensus 21 gi~~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~ 67 (231)
T 4a74_A 21 GIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDT 67 (231)
T ss_dssp SEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEES
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEEC
Confidence 69999999999999999999999999966664333222333334433
No 107
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=99.59 E-value=1.1e-18 Score=148.26 Aligned_cols=113 Identities=17% Similarity=0.239 Sum_probs=83.9
Q ss_pred EcCCcEEEEEcCCCChHHHHHHHHhcCcCCCccEEEEcCeEEEEecCCCCccccHHHHHhc----CCc--ccHHHHHHHH
Q psy1503 114 FKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSLGGTVSYASQEPWIFAATIRQNILF----GLP--YLRRRYADVI 187 (265)
Q Consensus 114 i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g~i~~v~Q~~~l~~~ti~eni~~----~~~--~~~~~~~~~~ 187 (265)
.++|++++|+||||||||||+++|+|+++|+ | ..+++++++...++.+..+|+.. +.+ ++...+.+.
T Consensus 19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~~~~~-g-----~~~g~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 91 (208)
T 3c8u_A 19 QPGRQLVALSGAPGSGKSTLSNPLAAALSAQ-G-----LPAEVVPMDGFHLDNRLLEPRGLLPRKGAPETFDFEGFQRL- 91 (208)
T ss_dssp CCSCEEEEEECCTTSCTHHHHHHHHHHHHHT-T-----CCEEEEESGGGBCCHHHHGGGTCGGGTTSGGGBCHHHHHHH-
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHhhc-C-----CceEEEecCCCcCCHHHHHHhcccccCCCCchhhHHHHHHH-
Confidence 5789999999999999999999999999876 4 24788899888887777766531 111 122222222
Q ss_pred HHhcchhHHhcCCC--CCccccCCCCCCCCHHHHHHHHHH-HHHccCCCEEEEeCCC
Q psy1503 188 RVCALQDDFDSLPN--GDFTVVGERGASLSGGQKARINLA-RAVYKNADIYLLDDPL 241 (265)
Q Consensus 188 ~~~~l~~~i~~l~~--g~~t~vg~~g~~LSgGqrqRialA-Ral~~~~~illLDEp~ 241 (265)
+..++. ...+.+.+++..+|+||+||+++| |+++.++.++++|||.
T Consensus 92 --------l~~l~~~~~i~~p~~d~~~~~~~g~~~~v~~~~~~~i~eg~~~l~de~~ 140 (208)
T 3c8u_A 92 --------CHALKHQERVIYPLFDRARDIAIAGAAEVGPECRVAIIEGNYLLFDAPG 140 (208)
T ss_dssp --------HHHHHHCSCEEEEEEETTTTEEEEEEEEECTTCCEEEEEESSTTBCSTT
T ss_pred --------HHHHhcCCceecccCCccccCCCCCceEEcCCCcEEEECCceeccCCch
Confidence 222222 234556788889999999999998 9999999999999985
No 108
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=99.59 E-value=1.9e-16 Score=131.43 Aligned_cols=123 Identities=14% Similarity=-0.012 Sum_probs=78.6
Q ss_pred EEcCCcEEEEEcCCCChHHHHHHHHhcCcCCCccEEEEcCe-----------EEEEecCCCCccccHHHHHhcCCcccHH
Q psy1503 113 TFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSLGGT-----------VSYASQEPWIFAATIRQNILFGLPYLRR 181 (265)
Q Consensus 113 ~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g~-----------i~~v~Q~~~l~~~ti~eni~~~~~~~~~ 181 (265)
.+++|++++|+||||||||||+++|+|. |..|.|.++|. ++|++|++. .+.++.+|+.+...
T Consensus 5 ~i~~g~~i~l~G~~GsGKSTl~~~La~~--~~~g~i~i~~d~~~~~~~~~~~~~~~~~~~~-~~~~v~~~l~~~~~---- 77 (191)
T 1zp6_A 5 DDLGGNILLLSGHPGSGKSTIAEALANL--PGVPKVHFHSDDLWGYIKHGRIDPWLPQSHQ-QNRMIMQIAADVAG---- 77 (191)
T ss_dssp -CCTTEEEEEEECTTSCHHHHHHHHHTC--SSSCEEEECTTHHHHTCCSSCCCTTSSSHHH-HHHHHHHHHHHHHH----
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHhc--cCCCeEEEcccchhhhhhcccccCCccchhh-hhHHHHHHHHHHHH----
Confidence 4789999999999999999999999998 78899998863 345555432 23467777654210
Q ss_pred HHHHHHHHhcchhHHhcCCC--CCccc--cCCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHH
Q psy1503 182 RYADVIRVCALQDDFDSLPN--GDFTV--VGERGASLSGGQKARINLARAVYKNADIYLLDDPLSAVDMHVGKHLFE 254 (265)
Q Consensus 182 ~~~~~~~~~~l~~~i~~l~~--g~~t~--vg~~g~~LSgGqrqRialARal~~~~~illLDEp~s~LD~~~~~~i~~ 254 (265)
.....+....++.+.. +.... .+.....+|+|++||+++||++.++|+++ +|+...+.+++
T Consensus 78 ----~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ls~~~~~~v~~~R~~~r~~~~l--------ld~~~~~~~~~ 142 (191)
T 1zp6_A 78 ----RYAKEGYFVILDGVVRPDWLPAFTALARPLHYIVLRTTAAEAIERCLDRGGDSL--------SDPLVVADLHS 142 (191)
T ss_dssp ----HHHHTSCEEEECSCCCTTTTHHHHTTCSCEEEEEEECCHHHHHHHHHTTCTTSC--------CCHHHHHHHHH
T ss_pred ----HHhccCCeEEEeccCcHHHHHHHHhcCCCeEEEEecCCHHHHHHHHHhcCCCcc--------CCHHHHHHHHH
Confidence 0000010000111100 11100 13344679999999999999999999876 57766666544
No 109
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=99.56 E-value=2.3e-15 Score=138.44 Aligned_cols=118 Identities=19% Similarity=0.255 Sum_probs=75.2
Q ss_pred EeEEEEeCCCCCCcceeeceE-------EEcCCcEEEEEcCCCChHHHHHHHHhcCcCCC-ccEEEEcCeEEEEecCCCC
Q psy1503 92 DNVTAQWSLQNADLTLNAVSI-------TFKPKQLACIIGAIGAGKTSLLHIILNELRIS-SGKVSLGGTVSYASQEPWI 163 (265)
Q Consensus 92 ~~~~~~~~~~~~~~~l~~isl-------~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~-~G~i~~~g~i~~v~Q~~~l 163 (265)
.+++++|... ..+.|+++.+ ...+|++++|+||||||||||+++|+|+++|+ +|.|.. -.+|.-
T Consensus 92 ~~~~iR~~~~-~~~~l~~lg~~~~l~~l~~~~~g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t-------~ed~~e 163 (356)
T 3jvv_A 92 AGAVFRTIPS-KVLTMEELGMGEVFKRVSDVPRGLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILT-------IEDPIE 163 (356)
T ss_dssp EEEEEEEECC-SCCCTTTTTCCHHHHHHHHCSSEEEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEE-------EESSCC
T ss_pred cEEEEEECCC-CCCCHHHcCChHHHHHHHhCCCCEEEEECCCCCCHHHHHHHHHhcccCCCCcEEEE-------ccCcHH
Confidence 4566776433 3456777776 67889999999999999999999999999997 455522 112211
Q ss_pred ccccHHHHHhcCCcccHHHHHHHHHHhcchhHHhcCCCCCccccCCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCC
Q psy1503 164 FAATIRQNILFGLPYLRRRYADVIRVCALQDDFDSLPNGDFTVVGERGASLSGGQKARINLARAVYKNADIYLLDDPLSA 243 (265)
Q Consensus 164 ~~~ti~eni~~~~~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~vg~~g~~LSgGqrqRialARal~~~~~illLDEp~s~ 243 (265)
+ ..... .+. +.. ..++.. .++-.+ +|||||..+||++++|||+
T Consensus 164 ~----------~~~~~---------~~~----v~q------~~~~~~--~~~~~~----~La~aL~~~PdvillDEp~-- 206 (356)
T 3jvv_A 164 F----------VHESK---------KCL----VNQ------REVHRD--TLGFSE----ALRSALREDPDIILVGEMR-- 206 (356)
T ss_dssp S----------CCCCS---------SSE----EEE------EEBTTT--BSCHHH----HHHHHTTSCCSEEEESCCC--
T ss_pred h----------hhhcc---------ccc----eee------eeeccc--cCCHHH----HHHHHhhhCcCEEecCCCC--
Confidence 1 00000 000 000 011111 123222 9999999999999999999
Q ss_pred cCHHHHHHHHHH
Q psy1503 244 VDMHVGKHLFED 255 (265)
Q Consensus 244 LD~~~~~~i~~~ 255 (265)
|.++.+.+.+.
T Consensus 207 -d~e~~~~~~~~ 217 (356)
T 3jvv_A 207 -DLETIRLALTA 217 (356)
T ss_dssp -SHHHHHHHHHH
T ss_pred -CHHHHHHHHHH
Confidence 77776655443
No 110
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=99.55 E-value=1.9e-17 Score=159.31 Aligned_cols=50 Identities=14% Similarity=0.042 Sum_probs=46.6
Q ss_pred CCcceeeceE-EEcCCcEEEEEcCCCChHHHHHHH--HhcCcCCCccEEEEcC
Q psy1503 103 ADLTLNAVSI-TFKPKQLACIIGAIGAGKTSLLHI--ILNELRISSGKVSLGG 152 (265)
Q Consensus 103 ~~~~l~~isl-~i~~G~~~~ivG~~GsGKSTLl~~--l~g~~~~~~G~i~~~g 152 (265)
..++|++++| .|++|++++|+||||||||||+++ +.|+++|.+|.|+++|
T Consensus 24 g~~~Ld~i~~G~i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~~~~g~i~v~g 76 (525)
T 1tf7_A 24 MIEGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTF 76 (525)
T ss_dssp CCTTHHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHCCCEEEEES
T ss_pred CchhHHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEE
Confidence 3568999999 999999999999999999999999 6899999999998876
No 111
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=99.54 E-value=7.1e-15 Score=129.97 Aligned_cols=118 Identities=15% Similarity=0.185 Sum_probs=76.6
Q ss_pred EEcCCcEEEEEcCCCChHHHHHHHHhcCcCCCccEEEE------cCeEEEEecCCCCccccHHHHHh-cCCcccHHHHHH
Q psy1503 113 TFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSL------GGTVSYASQEPWIFAATIRQNIL-FGLPYLRRRYAD 185 (265)
Q Consensus 113 ~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~------~g~i~~v~Q~~~l~~~ti~eni~-~~~~~~~~~~~~ 185 (265)
.+++|++++|+||||||||||++.+++.+. .|.+.. .+.+.|+..+... ..+...+. ++.........+
T Consensus 26 gl~~G~i~~i~G~~GsGKTtl~~~l~~~~~--~g~~~~g~~~~~~~~v~~~~~e~~~--~~~~~r~~~~g~~~~~~~~~~ 101 (279)
T 1nlf_A 26 NMVAGTVGALVSPGGAGKSMLALQLAAQIA--GGPDLLEVGELPTGPVIYLPAEDPP--TAIHHRLHALGAHLSAEERQA 101 (279)
T ss_dssp TEETTSEEEEEESTTSSHHHHHHHHHHHHH--TCCCTTCCCCCCCCCEEEEESSSCH--HHHHHHHHHHHTTSCHHHHHH
T ss_pred CccCCCEEEEEcCCCCCHHHHHHHHHHHHh--cCCCcCCCccCCCccEEEEECCCCH--HHHHHHHHHHHhhcChhhhhh
Confidence 478999999999999999999999998654 343322 2357777665432 12222221 222222222233
Q ss_pred HHHHhcchhHHhcCCCCCccccCCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCC--CcCHHH
Q psy1503 186 VIRVCALQDDFDSLPNGDFTVVGERGASLSGGQKARINLARAVYKNADIYLLDDPLS--AVDMHV 248 (265)
Q Consensus 186 ~~~~~~l~~~i~~l~~g~~t~vg~~g~~LSgGqrqRialARal~~~~~illLDEp~s--~LD~~~ 248 (265)
+++.+.+.+ ..+.....||+||+|++ |+++.+|+++|+|||++ ++|...
T Consensus 102 ~~~~l~l~~-----------~~~~~~~~ls~g~~~~i---~~l~~~~~livlDe~~~~~~~d~~~ 152 (279)
T 1nlf_A 102 VADGLLIQP-----------LIGSLPNIMAPEWFDGL---KRAAEGRRLMVLDTLRRFHIEEENA 152 (279)
T ss_dssp HHHHEEECC-----------CTTSCCCTTSHHHHHHH---HHHHTTCSEEEEECGGGGCCSCTTC
T ss_pred ccCceEEee-----------cCCCCcccCCHHHHHHH---HHhcCCCCEEEECCHHHhcCCCcCc
Confidence 333332221 12345678999998865 68888999999999999 998743
No 112
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=99.53 E-value=6.1e-18 Score=142.88 Aligned_cols=123 Identities=16% Similarity=0.221 Sum_probs=81.1
Q ss_pred cCCcEEEEEcCCCChHHHHHHHHhcCcC-------------CCccEEEEcCe-EEE---------EecCCCCccccHHHH
Q psy1503 115 KPKQLACIIGAIGAGKTSLLHIILNELR-------------ISSGKVSLGGT-VSY---------ASQEPWIFAATIRQN 171 (265)
Q Consensus 115 ~~G~~~~ivG~~GsGKSTLl~~l~g~~~-------------~~~G~i~~~g~-i~~---------v~Q~~~l~~~ti~en 171 (265)
++|++++|+||||||||||+++|+|+++ |..|+ ++|. +.+ ++|+++++..++.+|
T Consensus 2 ~~g~~i~lvGpsGaGKSTLl~~L~~~~~~~~~~~v~~ttr~~~~g~--~~g~~~~~~~~~~~~~~i~~~~~l~~~~~~~n 79 (198)
T 1lvg_A 2 AGPRPVVLSGPSGAGKSTLLKKLFQEHSSIFGFSVSHTTRNPRPGE--EDGKDYYFVTREMMQRDIAAGDFIEHAEFSGN 79 (198)
T ss_dssp ---CCEEEECCTTSSHHHHHHHHHHHHTTTEEECCCEECSCCCTTC--CBTTTBEECCHHHHHHHHHHTCEEEEEEETTE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCchhceeeeeeeccCCCCcc--cCCceEEEccHHHHHHHHHcCCCEeeeeecCc
Confidence 5899999999999999999999999886 77786 3553 222 246677788888888
Q ss_pred HhcCCcccHHHHHHHHHHhcchhHHhcCCCCCccccCCCCCCCCHHHHHHHHHHH-HHccCCCEEEEeCCCCCcCHHHHH
Q psy1503 172 ILFGLPYLRRRYADVIRVCALQDDFDSLPNGDFTVVGERGASLSGGQKARINLAR-AVYKNADIYLLDDPLSAVDMHVGK 250 (265)
Q Consensus 172 i~~~~~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~vg~~g~~LSgGqrqRialAR-al~~~~~illLDEp~s~LD~~~~~ 250 (265)
+ +|. ..+.+.++++..... .++..+.|+.+.... ++ .|| +++.+|++.+|||+|+++|..+++
T Consensus 80 ~-~g~--~~~~i~~~~~~~~~~-~~~~~~~g~~~~~~~-----------~~-~~~~~~l~~p~~~ilde~~~~~d~~~e~ 143 (198)
T 1lvg_A 80 L-YGT--SKEAVRAVQAMNRIC-VLDVDLQGVRSIKKT-----------DL-CPIYIFVQPPSLDVLEQRLRLRNTETEE 143 (198)
T ss_dssp E-EEE--EHHHHHHHHHTTCEE-EEECCHHHHHHHTTS-----------SC-CCEEEEEECSCHHHHHHHHHHHTCSCHH
T ss_pred c-CCC--CHHHHHHHHHcCCcE-EEECCHHHHHHHHhc-----------CC-CcEEEEEeCCCHHHHHHHHHhcCCCCHH
Confidence 7 653 344555555432111 111123333332211 12 566 788999999999999999999888
Q ss_pred HHHHH
Q psy1503 251 HLFED 255 (265)
Q Consensus 251 ~i~~~ 255 (265)
.|.+.
T Consensus 144 ~i~~~ 148 (198)
T 1lvg_A 144 SLAKR 148 (198)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 87543
No 113
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=99.53 E-value=2.6e-14 Score=143.86 Aligned_cols=53 Identities=25% Similarity=0.442 Sum_probs=46.2
Q ss_pred cCCCCCCCCHHHHHHHHHHHHHccCCC--EEEEeCCCCCcCHHHHHHHHHHHHHHH
Q psy1503 207 VGERGASLSGGQKARINLARAVYKNAD--IYLLDDPLSAVDMHVGKHLFEDCISGC 260 (265)
Q Consensus 207 vg~~g~~LSgGqrqRialARal~~~~~--illLDEp~s~LD~~~~~~i~~~~i~~~ 260 (265)
.+....+|||||||||+||++|..+|+ +|||||||++||+...+.+++ .+..+
T Consensus 373 l~r~~~tLSGGe~QRV~LA~aL~~~p~~~llILDEPT~~Ld~~~~~~L~~-~l~~L 427 (842)
T 2vf7_A 373 LDRSTPTLSPGELQRLRLATQLYSNLFGVVYVLDEPSAGLHPADTEALLS-ALENL 427 (842)
T ss_dssp TTCBGGGSCHHHHHHHHHHHHTTTCCCSCEEEEECTTTTCCGGGHHHHHH-HHHHH
T ss_pred ccCCcCcCCHHHHHHHHHHHHHhhCCCCeEEEeeCccccCCHHHHHHHHH-HHHHH
Confidence 467788999999999999999999994 999999999999999988866 44443
No 114
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=99.51 E-value=7.4e-16 Score=126.16 Aligned_cols=79 Identities=14% Similarity=0.156 Sum_probs=66.7
Q ss_pred eEEEEeCCCCCCcceeeceEEEcCCcEEEEEcCCCChHHHHHHHHhcCcCCCccEEEEcCe--------EEEEecCCCCc
Q psy1503 93 NVTAQWSLQNADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSLGGT--------VSYASQEPWIF 164 (265)
Q Consensus 93 ~~~~~~~~~~~~~~l~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g~--------i~~v~Q~~~l~ 164 (265)
++++.|+ ...+++++||++++|++++|+||||||||||+++|+|++ |++|+|.++|. -.+++|++.+|
T Consensus 12 ~~~~~~g---~~~~l~~vsl~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l-~~~G~V~~~g~~i~~~~~~~~~~~q~~~l~ 87 (158)
T 1htw_A 12 FSMLRFG---KKFAEILLKLHTEKAIMVYLNGDLGAGKTTLTRGMLQGI-GHQGNVKSPTYTLVEEYNIAGKMIYHFDLY 87 (158)
T ss_dssp HHHHHHH---HHHHHHHHHHCCSSCEEEEEECSTTSSHHHHHHHHHHHT-TCCSCCCCCTTTCEEEEEETTEEEEEEECT
T ss_pred HHHHHHH---HHHHHhccccccCCCCEEEEECCCCCCHHHHHHHHHHhC-CCCCeEEECCEeeeeeccCCCcceeccccc
Confidence 4455563 246899999999999999999999999999999999999 99999998873 12689998888
Q ss_pred cccHHHHHh-cC
Q psy1503 165 AATIRQNIL-FG 175 (265)
Q Consensus 165 ~~ti~eni~-~~ 175 (265)
..|+.||+. +|
T Consensus 88 ~ltv~e~l~~~g 99 (158)
T 1htw_A 88 RLADPEELEFMG 99 (158)
T ss_dssp TCSCTTHHHHST
T ss_pred cCCcHHHHHHcC
Confidence 779999985 45
No 115
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=99.50 E-value=2.9e-15 Score=137.69 Aligned_cols=114 Identities=18% Similarity=0.175 Sum_probs=77.3
Q ss_pred cceeeceEEEcCCcEEEEEcCCCChHHHHHHHHhcCcC-CCccEEEEc-C---------eEEEEecCCCCccc-cHHHHH
Q psy1503 105 LTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELR-ISSGKVSLG-G---------TVSYASQEPWIFAA-TIRQNI 172 (265)
Q Consensus 105 ~~l~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~-~~~G~i~~~-g---------~i~~v~Q~~~l~~~-ti~eni 172 (265)
..++++++. .+|++++|+||||||||||+++|+|... |..|+|.+. | .+++++|++++++. +++++.
T Consensus 204 ~gl~~L~~~-~~G~~~~lvG~sG~GKSTLln~L~g~~~~~~~G~I~~~~G~g~~tt~~~~i~~v~q~~~l~dtpgv~e~~ 282 (358)
T 2rcn_A 204 DGLKPLEEA-LTGRISIFAGQSGVGKSSLLNALLGLQNEILTNDVSNVSGLGQHTTTAARLYHFPHGGDVIDSPGVREFG 282 (358)
T ss_dssp BTHHHHHHH-HTTSEEEEECCTTSSHHHHHHHHHCCSSCCCCC-------------CCCEEEECTTSCEEEECHHHHTCC
T ss_pred cCHHHHHHh-cCCCEEEEECCCCccHHHHHHHHhccccccccCCccccCCCCccceEEEEEEEECCCCEecCcccHHHhh
Confidence 357778775 4899999999999999999999999999 999999876 4 48999999988864 888863
Q ss_pred hcCCcccHHHHHHHHHHhcchhHHhcCCCCCccccCCCCCCCCHHHHHHHHHHHHHc
Q psy1503 173 LFGLPYLRRRYADVIRVCALQDDFDSLPNGDFTVVGERGASLSGGQKARINLARAVY 229 (265)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~vg~~g~~LSgGqrqRialARal~ 229 (265)
..+ ...+...+ ...+.+..+ +.....+....+|| ||+||++||++++
T Consensus 283 l~~--l~~~e~~~-----~~~e~l~~~--gl~~f~~~~~~~lS-G~~~r~ala~gli 329 (358)
T 2rcn_A 283 LWH--LEPEQITQ-----GFVEFHDYL--GHCKYRDCKHDADP-GCAIREAVENGAI 329 (358)
T ss_dssp CCC--CCHHHHHH-----TSGGGGGGT--TCSSSTTCCSSSCT-TCHHHHHHHHTSS
T ss_pred hcC--CCHHHHHH-----HHHHHHHHc--CCchhcCCCcccCC-HHHHHHHHHhcCC
Confidence 322 12222111 122222222 22233445667899 9999999999864
No 116
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=99.49 E-value=2.4e-16 Score=136.89 Aligned_cols=131 Identities=15% Similarity=0.219 Sum_probs=83.0
Q ss_pred CCcEEEEEcCCCChHHHHHHHHh---cCcCCCccEEEEcCe---------EEEEecCCCCcc-ccHHHHHhcC-------
Q psy1503 116 PKQLACIIGAIGAGKTSLLHIIL---NELRISSGKVSLGGT---------VSYASQEPWIFA-ATIRQNILFG------- 175 (265)
Q Consensus 116 ~G~~~~ivG~~GsGKSTLl~~l~---g~~~~~~G~i~~~g~---------i~~v~Q~~~l~~-~ti~eni~~~------- 175 (265)
++++++|+||||||||||+++|+ |+..|+.|+|.+++. +.+++|++.+++ .++.+|+...
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~lg~~~~~~G~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~v~~~l~~~l~~~~~~ 105 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNFGLQHLSSGHFLRENIKASTEVGEMAKQYIEKSLLVPDHVITRLMMSELENRRGQ 105 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCCCCEEHHHHHHHHHHTTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTCTTS
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCeEecHHHHHHHHHhcCChHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhcCCC
Confidence 47899999999999999999999 999999998876541 445567776665 4888888541
Q ss_pred ------CcccHHHHHHHHHHhcch--hHHhcCCCC--CccccCCCCCCCCHHHHHHHHHHHHH-ccCCCEEEEe----CC
Q psy1503 176 ------LPYLRRRYADVIRVCALQ--DDFDSLPNG--DFTVVGERGASLSGGQKARINLARAV-YKNADIYLLD----DP 240 (265)
Q Consensus 176 ------~~~~~~~~~~~~~~~~l~--~~i~~l~~g--~~t~vg~~g~~LSgGqrqRialARal-~~~~~illLD----Ep 240 (265)
.+....+........... -.++ .|.. ..-....+...||| |+ ||+ +.+|++++|| ||
T Consensus 106 ~~il~g~~~~~~~~~~l~~~~~~~~vi~L~-~~~~~~l~r~~~r~~~~lSg----rv---~al~~~~P~~lllD~~~~EP 177 (246)
T 2bbw_A 106 HWLLDGFPRTLGQAEALDKICEVDLVISLN-IPFETLKDRLSRRWIHPPSG----RV---YNLDFNPPHVHGIDDVTGEP 177 (246)
T ss_dssp CEEEESCCCSHHHHHHHHTTCCCCEEEEEE-CCHHHHHHHHHTEEEETTTT----EE---EETTTSCCSSTTBCTTTCCB
T ss_pred eEEEECCCCCHHHHHHHHhhcCCCEEEEEE-CCHHHHHHHHHcCCCcCCCC----Cc---cccccCCCcccccccccccc
Confidence 111111111110000000 0000 0000 00011234557898 66 788 9999999999 99
Q ss_pred CCCcCHHHHHHHHH
Q psy1503 241 LSAVDMHVGKHLFE 254 (265)
Q Consensus 241 ~s~LD~~~~~~i~~ 254 (265)
|+++|..+...+.+
T Consensus 178 ~~~ld~~~~~~i~~ 191 (246)
T 2bbw_A 178 LVQQEDDKPEAVAA 191 (246)
T ss_dssp CBCCGGGSHHHHHH
T ss_pred cccCCCCcHHHHHH
Confidence 99999988776644
No 117
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=99.45 E-value=5.4e-14 Score=119.18 Aligned_cols=135 Identities=12% Similarity=0.068 Sum_probs=82.0
Q ss_pred CcceeeceE-EEcCCcEEEEEcCCCChHHHHHHHHhcCcCCCccEEEEcCeEEEEecCCCCccccHHHHHh-cCCcccHH
Q psy1503 104 DLTLNAVSI-TFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSLGGTVSYASQEPWIFAATIRQNIL-FGLPYLRR 181 (265)
Q Consensus 104 ~~~l~~isl-~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g~i~~v~Q~~~l~~~ti~eni~-~~~~~~~~ 181 (265)
.+.|+++.. .+++|++++|+||||||||||++.|++...+.+|.+. |+..+.. ...+.+.+. ++.....
T Consensus 9 ~~~Ld~~~~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~------~~~~~~~--~~~~~~~~~~~~~~~~~- 79 (235)
T 2w0m_A 9 ILDFDKLIQGGIPQGFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCI------YVTTEES--RDSIIRQAKQFNWDFEE- 79 (235)
T ss_dssp CHHHHGGGTTSEETTCEEEEECSTTSSHHHHHHHHHHHHHHHTCCEE------EEESSSC--HHHHHHHHHHTTCCCGG-
T ss_pred chHHHHHhcCCCcCCCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEE------EEEcccC--HHHHHHHHHHhcchHHH-
Confidence 457888888 8999999999999999999999999998877666553 4433321 111222211 1111100
Q ss_pred HHHHHHHHhcchhHHhcCCCCCccccCCCCCCCCHHHHHHHHHHHHHccCCC--EEEEeCCCCCc--CHHHHHHHHHH
Q psy1503 182 RYADVIRVCALQDDFDSLPNGDFTVVGERGASLSGGQKARINLARAVYKNAD--IYLLDDPLSAV--DMHVGKHLFED 255 (265)
Q Consensus 182 ~~~~~~~~~~l~~~i~~l~~g~~t~vg~~g~~LSgGqrqRialARal~~~~~--illLDEp~s~L--D~~~~~~i~~~ 255 (265)
+.. ..+ ..++.......... .....|.+|.++...+.+...+|+ ++++|||++.+ |+.....+++.
T Consensus 80 -~~~----~~~-~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~~~~d~~~~~~~~~~ 149 (235)
T 2w0m_A 80 -YIE----KKL-IIIDALMKEKEDQW--SLVNLTPEELVNKVIEAKQKLGYGKARLVIDSVSALFLDKPAMARKISYY 149 (235)
T ss_dssp -GBT----TTE-EEEECCC----CTT--BCSSCCHHHHHHHHHHHHHHHCSSCEEEEEETGGGGSSSCGGGHHHHHHH
T ss_pred -Hhh----CCE-EEEeccccccCcee--eecCCCHHHHHHHHHHHHHhhCCCceEEEEECchHhhcCCHHHHHHHHHH
Confidence 000 000 00010000000000 012349999998888887778999 99999999888 98776666553
No 118
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=99.45 E-value=6.3e-14 Score=140.80 Aligned_cols=134 Identities=10% Similarity=0.079 Sum_probs=81.0
Q ss_pred cEEEEeEEEEeCC--CCCCcceeeceEEEcCCcEEEEEcCCCChHHHHHHHHhcCcCC-CccEEEEc---CeEEEEecCC
Q psy1503 88 HVSLDNVTAQWSL--QNADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRI-SSGKVSLG---GTVSYASQEP 161 (265)
Q Consensus 88 ~i~~~~~~~~~~~--~~~~~~l~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~-~~G~i~~~---g~i~~v~Q~~ 161 (265)
.+.+++..+-.=. .....+++|++|+ ++|++++|+||||||||||+++|+|...+ ..|.. +. ..+++++|
T Consensus 577 ~i~i~~~rHP~le~~~~~~~vlndisl~-~~g~i~~ItGpNGsGKSTlLr~iagl~~~~q~G~~-vpa~~~~i~~~~~-- 652 (800)
T 1wb9_A 577 GIRITEGRHPVVEQVLNEPFIANPLNLS-PQRRMLIITGPNMGGKSTYMRQTALIALMAYIGSY-VPAQKVEIGPIDR-- 652 (800)
T ss_dssp CEEEEEECCTTHHHHCSSCCCCEEEEEC-SSSCEEEEECCTTSSHHHHHHHHHHHHHHHTTTCC-BSSSEEEECCCCE--
T ss_pred CEEEEeccccEEEccCCCceeeeccccc-CCCcEEEEECCCCCChHHHHHHHHHHHHHHhcCcc-cchhcccceeHHH--
Confidence 4677665422100 0135689999999 99999999999999999999999986422 22311 00 01333333
Q ss_pred CCcc-ccHHHHHhcCCcccHHHHHHHHHHhcchhHHhcCCCCCccccCCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCC
Q psy1503 162 WIFA-ATIRQNILFGLPYLRRRYADVIRVCALQDDFDSLPNGDFTVVGERGASLSGGQKARINLARAVYKNADIYLLDDP 240 (265)
Q Consensus 162 ~l~~-~ti~eni~~~~~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~vg~~g~~LSgGqrqRialARal~~~~~illLDEp 240 (265)
+|. .++.||+.. ....+|+++++ ++.+...+.+|+++|||||
T Consensus 653 -i~~~~~~~d~l~~-----------------------------------~~stf~~e~~~-~~~il~~a~~psLlLLDEp 695 (800)
T 1wb9_A 653 -IFTRVGAADDLAS-----------------------------------GRSTFMVEMTE-TANILHNATEYSLVLMDEI 695 (800)
T ss_dssp -EEEEEC----------------------------------------------CHHHHHH-HHHHHHHCCTTEEEEEESC
T ss_pred -HHhhCCHHHHHHh-----------------------------------hhhhhhHHHHH-HHHHHHhccCCCEEEEECC
Confidence 222 133333211 11246777664 4444556899999999999
Q ss_pred CCCcCHHHHHHHHHHHHHHHhh
Q psy1503 241 LSAVDMHVGKHLFEDCISGCLT 262 (265)
Q Consensus 241 ~s~LD~~~~~~i~~~~i~~~l~ 262 (265)
++|+|+.....+....+..+.+
T Consensus 696 ~~Gtd~~d~~~i~~~ll~~l~~ 717 (800)
T 1wb9_A 696 GRGTSTYDGLSLAWACAENLAN 717 (800)
T ss_dssp CCCSSSSHHHHHHHHHHHHHHH
T ss_pred CCCCChhHHHHHHHHHHHHHHh
Confidence 9999988777765555554443
No 119
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=99.42 E-value=1.8e-14 Score=123.90 Aligned_cols=57 Identities=16% Similarity=0.215 Sum_probs=41.2
Q ss_pred EEEEeEEEEeCCCCCCcceeeceE--EEcCCcEEEEEcCCCChHHHHHHHHh--cCcCCCccEEEEcC
Q psy1503 89 VSLDNVTAQWSLQNADLTLNAVSI--TFKPKQLACIIGAIGAGKTSLLHIIL--NELRISSGKVSLGG 152 (265)
Q Consensus 89 i~~~~~~~~~~~~~~~~~l~~isl--~i~~G~~~~ivG~~GsGKSTLl~~l~--g~~~~~~G~i~~~g 152 (265)
+++++++..++ .|+++ + .|++|++++|+||||||||||+++|+ |...+.+|.+.+++
T Consensus 7 ~~~~~i~tg~~------~lD~~-l~Ggi~~G~~~~l~GpnGsGKSTLl~~i~~~~~~~~~~~~~~~~~ 67 (251)
T 2ehv_A 7 QPVRRVKSGIP------GFDEL-IEGGFPEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTL 67 (251)
T ss_dssp -CCCEECCSCT------TTGGG-TTTSEETTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEES
T ss_pred cccceeecCCH------hHHHH-hcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEc
Confidence 45555555443 24444 2 79999999999999999999999999 66566666665543
No 120
>1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B*
Probab=99.42 E-value=1.9e-13 Score=110.60 Aligned_cols=51 Identities=22% Similarity=0.337 Sum_probs=44.0
Q ss_pred CCCCCCCHHHHHHHHHH------HHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHH
Q psy1503 209 ERGASLSGGQKARINLA------RAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGC 260 (265)
Q Consensus 209 ~~g~~LSgGqrqRialA------Ral~~~~~illLDEp~s~LD~~~~~~i~~~~i~~~ 260 (265)
....+||||||||++|| ||++.+|+++||||||++||+.+...+.+ .+..+
T Consensus 53 ~~~~~LSgGe~qrv~lA~~Lalaral~~~p~lllLDEPt~~LD~~~~~~l~~-~l~~~ 109 (148)
T 1f2t_B 53 RPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLIT-IMERY 109 (148)
T ss_dssp ECGGGSCHHHHHHHHHHHHHHHHHHHHSSCSEEEEESCSCTTCHHHHHHHHH-HHHHT
T ss_pred CChhHCCHHHHHHHHHHhhhHHHHHHcCCCCEEEEECCCccCCHHHHHHHHH-HHHHH
Confidence 45689999999999876 99999999999999999999999988765 44443
No 121
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=99.40 E-value=3.4e-15 Score=136.24 Aligned_cols=161 Identities=13% Similarity=0.129 Sum_probs=102.7
Q ss_pred EEEEeEEEEeCCCCCCcceeeceEEEcCCcEEEEEcCCCChHHHHHHHHhcCcCCCccEEEEcC----------------
Q psy1503 89 VSLDNVTAQWSLQNADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSLGG---------------- 152 (265)
Q Consensus 89 i~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g---------------- 152 (265)
++++++++.|+ ...++++++|++++|++++|+||||||||||+++|+|++.|++|+|.+.+
T Consensus 30 ie~~~~~~~~~---~~~~l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~~~~~~g~v~i~~~d~~~~~~~~~~~~~~ 106 (337)
T 2qm8_A 30 AESRRADHRAA---VRDLIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPSSTRTGGSILGDK 106 (337)
T ss_dssp HTCSSHHHHHH---HHHHHHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECGGGGSSCCCSSCCG
T ss_pred HeeCCcccccC---hHHHHHhCCcccCCCeEEEEECCCCCCHHHHHHHHHHhhhhCCCEEEEEEEcCcccccccchHHHh
Confidence 55666777774 24589999999999999999999999999999999999999999998764
Q ss_pred -eEEEEecCCCCcc----------c---cHHHHHh-c---CCcc--------cHHHHHHHHHHhcc---------hhHHh
Q psy1503 153 -TVSYASQEPWIFA----------A---TIRQNIL-F---GLPY--------LRRRYADVIRVCAL---------QDDFD 197 (265)
Q Consensus 153 -~i~~v~Q~~~l~~----------~---ti~eni~-~---~~~~--------~~~~~~~~~~~~~l---------~~~i~ 197 (265)
.+++++|++.+|. + +++|.+. + +.++ .+.. ..+.+.+.+ .+.+.
T Consensus 107 ~~i~~v~q~~~~~~~~~~~~~~l~G~tr~~~e~~~~~~~~~~~~iliDT~Gi~~~~-~~v~~~~d~vl~v~d~~~~~~~~ 185 (337)
T 2qm8_A 107 TRMARLAIDRNAFIRPSPSSGTLGGVAAKTRETMLLCEAAGFDVILVETVGVGQSE-TAVADLTDFFLVLMLPGAGDELQ 185 (337)
T ss_dssp GGSTTGGGCTTEEEECCCCCSSHHHHHHHHHHHHHHHHHTTCCEEEEEECSSSSCH-HHHHTTSSEEEEEECSCC-----
T ss_pred hhheeeccCcccccccCcccccccchHHHHHHHHHHHhcCCCCEEEEECCCCCcch-hhHHhhCCEEEEEEcCCCcccHH
Confidence 1688889888774 2 2233321 0 1000 0000 001010000 00000
Q ss_pred -------cCCCCC-ccccC-CCCCCCCHHHHHHHHHHHHHcc------CCCEEEEeCCCCCcCHHHHHHHHHHHH
Q psy1503 198 -------SLPNGD-FTVVG-ERGASLSGGQKARINLARAVYK------NADIYLLDDPLSAVDMHVGKHLFEDCI 257 (265)
Q Consensus 198 -------~l~~g~-~t~vg-~~g~~LSgGqrqRialARal~~------~~~illLDEp~s~LD~~~~~~i~~~~i 257 (265)
..+.-. -+.+. .....+|+|++|++..|++++. +|+++. +|++|......+++.+.
T Consensus 186 ~i~~~i~~~~~ivvlNK~Dl~~~~~~s~~~~~~l~~a~~l~~~~~~~~~~~vl~----~Sal~g~gi~~L~~~I~ 256 (337)
T 2qm8_A 186 GIKKGIFELADMIAVNKADDGDGERRASAAASEYRAALHILTPPSATWTPPVVT----ISGLHGKGLDSLWSRIE 256 (337)
T ss_dssp -CCTTHHHHCSEEEEECCSTTCCHHHHHHHHHHHHHHHTTBCCSBTTBCCCEEE----EBTTTTBSHHHHHHHHH
T ss_pred HHHHHHhccccEEEEEchhccCchhHHHHHHHHHHHHHHhccccccCCCCCEEE----EeCCCCCCHHHHHHHHH
Confidence 001000 00111 0124579999999999999987 688876 99999988887766443
No 122
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=99.40 E-value=2.6e-15 Score=140.78 Aligned_cols=114 Identities=19% Similarity=0.204 Sum_probs=77.1
Q ss_pred ceeeceEEEcCCcEEEEEcCCCChHHHHHHHHhcCcCCCccEEEEcCe-----------------EEEEe---------c
Q psy1503 106 TLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSLGGT-----------------VSYAS---------Q 159 (265)
Q Consensus 106 ~l~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g~-----------------i~~v~---------Q 159 (265)
+|+++ + .++|++++|+||||||||||+++|+|+++|++|+|.+.+. +++.+ |
T Consensus 158 ~L~~l-~-~~~ggii~I~GpnGSGKTTlL~allg~l~~~~g~I~~~ed~ie~~~~~~~q~~v~~~~g~~f~~~lr~~Lrq 235 (418)
T 1p9r_A 158 NFRRL-I-KRPHGIILVTGPTGSGKSTTLYAGLQELNSSERNILTVEDPIEFDIDGIGQTQVNPRVDMTFARGLRAILRQ 235 (418)
T ss_dssp HHHHH-H-TSSSEEEEEECSTTSCHHHHHHHHHHHHCCTTSCEEEEESSCCSCCSSSEEEECBGGGTBCHHHHHHHHGGG
T ss_pred HHHHH-H-HhcCCeEEEECCCCCCHHHHHHHHHhhcCCCCCEEEEecccchhccCCcceEEEccccCcCHHHHHHHHhcc
Confidence 35555 3 3789999999999999999999999999999999987542 22333 7
Q ss_pred CCCCc--c-----ccHHHHHhcC---Cc-------ccHHHHHHHHHHhcchhHHhcCCCCCccccCCCCCCCCHHHHHHH
Q psy1503 160 EPWIF--A-----ATIRQNILFG---LP-------YLRRRYADVIRVCALQDDFDSLPNGDFTVVGERGASLSGGQKARI 222 (265)
Q Consensus 160 ~~~l~--~-----~ti~eni~~~---~~-------~~~~~~~~~~~~~~l~~~i~~l~~g~~t~vg~~g~~LSgGqrqRi 222 (265)
+|.++ . .|+.+++.++ .. .+.....+.+...++.... ...+|||||+||
T Consensus 236 ~pd~i~vgEiRd~et~~~~l~a~~tGhlv~~tlh~~~~~~~i~rL~~lgl~~~~-------------~~~~LSgg~~QR- 301 (418)
T 1p9r_A 236 DPDVVMVGEIRDLETAQIAVQASLTGHLVMSTLHTNTAVGAVTRLRDMGIEPFL-------------ISSSLLGVLAQR- 301 (418)
T ss_dssp CCSEEEESCCCSHHHHHHHHHHHHTTCEEEEEECCSSSHHHHHHHHHHTCCHHH-------------HHHHEEEEEEEE-
T ss_pred CCCeEEEcCcCCHHHHHHHHHHHHhCCCcccccchhhHHHHHHHHHHcCCcHHH-------------HHHHHHHHHHHH-
Confidence 77542 2 3777777642 10 0111111122333332211 235799999999
Q ss_pred HHHHHHccCCCEEE
Q psy1503 223 NLARAVYKNADIYL 236 (265)
Q Consensus 223 alARal~~~~~ill 236 (265)
|||+++.+|++..
T Consensus 302 -LaraL~~~p~~~~ 314 (418)
T 1p9r_A 302 -LVRTLCPDCKEPY 314 (418)
T ss_dssp -EEEEECTTTCEEE
T ss_pred -hhhhhcCCCCccC
Confidence 9999999999875
No 123
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=99.38 E-value=3.7e-14 Score=121.89 Aligned_cols=55 Identities=22% Similarity=0.203 Sum_probs=41.3
Q ss_pred eEEEcCCcEEEEEcCCCChHHHHHHHHhcCcCC--CccEEEEcCe---------EEEEecCCCCcc
Q psy1503 111 SITFKPKQLACIIGAIGAGKTSLLHIILNELRI--SSGKVSLGGT---------VSYASQEPWIFA 165 (265)
Q Consensus 111 sl~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~--~~G~i~~~g~---------i~~v~Q~~~l~~ 165 (265)
.-..++|++++|+||||||||||+++|+|+++| ..|.|.+.++ ++|++|++.+|+
T Consensus 10 ~~~~~~G~ii~l~GpsGsGKSTLlk~L~g~~~p~~~~g~v~~ttr~~~~~e~~gi~y~fq~~~~f~ 75 (219)
T 1s96_A 10 HHHMAQGTLYIVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTRQPRPGEVHGEHYFFVNHDEFK 75 (219)
T ss_dssp -----CCCEEEEECCTTSCHHHHHHHHHHHSCTTTEEECCCEECSCCCTTCCBTTTBEECCHHHHH
T ss_pred cccCCCCcEEEEECCCCCCHHHHHHHHhccCCCCceEEEEEecCCCCCcccccCceEEECCHHHHH
Confidence 346799999999999999999999999999986 6788877542 567777665543
No 124
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=99.36 E-value=2.5e-13 Score=129.21 Aligned_cols=131 Identities=15% Similarity=0.176 Sum_probs=89.5
Q ss_pred eeeceEEEcCCcEEEEEcCCCChHHHHHHHHhcCcCCCccEEEEcC-------------------eEEEEecCCCCcc-c
Q psy1503 107 LNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSLGG-------------------TVSYASQEPWIFA-A 166 (265)
Q Consensus 107 l~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g-------------------~i~~v~Q~~~l~~-~ 166 (265)
-+++||++++|++++|+|+||||||||+++|+|++.|++|+|.+.+ .++|++|++.+++ .
T Consensus 283 ~~~Isl~i~~GeVI~LVGpNGSGKTTLl~~LAgll~~~~G~V~l~g~D~~r~aa~eQL~~~~~r~~I~vV~Q~~~~~p~~ 362 (503)
T 2yhs_A 283 DEPLNVEGKAPFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSAS 362 (503)
T ss_dssp BCCCCCCSCTTEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECCCTTCHHHHHHHHHHHHHHTCCEECCSTTCCHHH
T ss_pred CCCceeeccCCeEEEEECCCcccHHHHHHHHHHHhhhcCCeEEEecCcccchhhHHHHHHHHHhcCceEEecccCcCHHH
Confidence 4689999999999999999999999999999999999999999863 1789999887664 5
Q ss_pred cHHHHHhcCCcccHHHHHHHHHHhcchhH-HhcCCCCCccccCCCCCCCCHHHHHHHHHHHHHcc-CC-CEEEEeCCCCC
Q psy1503 167 TIRQNILFGLPYLRRRYADVIRVCALQDD-FDSLPNGDFTVVGERGASLSGGQKARINLARAVYK-NA-DIYLLDDPLSA 243 (265)
Q Consensus 167 ti~eni~~~~~~~~~~~~~~~~~~~l~~~-i~~l~~g~~t~vg~~g~~LSgGqrqRialARal~~-~~-~illLDEp~s~ 243 (265)
++++|+.++... +.+-. ++. . |.. .+-.++-.--+|++.++|++.. .| .++|..+|+++
T Consensus 363 tV~e~l~~a~~~------------~~DvVLIDT-a-Grl----~~~~~lm~EL~kiv~iar~l~~~~P~evLLvLDattG 424 (503)
T 2yhs_A 363 VIFDAIQAAKAR------------NIDVLIADT-A-GRL----QNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTG 424 (503)
T ss_dssp HHHHHHHHHHHT------------TCSEEEECC-C-CSC----CCHHHHHHHHHHHHHHHHTTCTTCSSEEEEEEEGGGT
T ss_pred HHHHHHHHHHhc------------CCCEEEEeC-C-Ccc----chhhhHHHHHHHHHHHHHHhccCCCCeeEEEecCccc
Confidence 899998764210 00000 110 0 000 0001222233578888997753 45 46667779999
Q ss_pred cCHHHHHHHHHH
Q psy1503 244 VDMHVGKHLFED 255 (265)
Q Consensus 244 LD~~~~~~i~~~ 255 (265)
.|.....+-|++
T Consensus 425 q~al~~ak~f~~ 436 (503)
T 2yhs_A 425 QNAVSQAKLFHE 436 (503)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 877655444443
No 125
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=99.35 E-value=3e-13 Score=126.69 Aligned_cols=126 Identities=17% Similarity=0.109 Sum_probs=79.2
Q ss_pred eeeceEEEcCCcEEEEEcCCCChHHHHHHHHhcCc-----------CCCccEEEEcC-eEEEEecCCCCccccHHHHHhc
Q psy1503 107 LNAVSITFKPKQLACIIGAIGAGKTSLLHIILNEL-----------RISSGKVSLGG-TVSYASQEPWIFAATIRQNILF 174 (265)
Q Consensus 107 l~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~g~~-----------~~~~G~i~~~g-~i~~v~Q~~~l~~~ti~eni~~ 174 (265)
-++++|+++.|+.++|+|+||||||||+++|++.. .|+.|.|.+++ .--.+.+.|-+... ..++..+
T Consensus 147 ~~~i~lelk~g~~VgLVG~~gAGKSTLL~~Lsg~~~~i~~~~ftTl~p~~G~V~~~~~~~~~l~DtpGli~~-a~~~~~L 225 (416)
T 1udx_A 147 KRRLRLELMLIADVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEVSEEERFTLADIPGIIEG-ASEGKGL 225 (416)
T ss_dssp EEEEEEEECCSCSEEEECCGGGCHHHHHHHHCSSCCEECCCTTCSSCCEEEEEECSSSCEEEEEECCCCCCC-GGGSCCS
T ss_pred EeeeeeEEcCCCEEEEECCCCCcHHHHHHHHHcCCccccCcccceecceeeEEEecCcceEEEEeccccccc-hhhhhhh
Confidence 47899999999999999999999999999999983 44445554443 22233344433321 1111111
Q ss_pred CCcccHHHHHHHHHHhcchhHHhcCCCCCccccCCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHH
Q psy1503 175 GLPYLRRRYADVIRVCALQDDFDSLPNGDFTVVGERGASLSGGQKARINLARAVYKNADIYLLDDPLSAVDMHVG 249 (265)
Q Consensus 175 ~~~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~vg~~g~~LSgGqrqRialARal~~~~~illLDEp~s~LD~~~~ 249 (265)
+ ...+.. .+.+.. .+..+... .+...+||+||+|++++|++|..+|.++++ +.+|....
T Consensus 226 ~----~~fl~~-~era~~--lL~vvDls-----~~~~~~ls~g~~el~~la~aL~~~P~ILVl----NKlDl~~~ 284 (416)
T 1udx_A 226 G----LEFLRH-IARTRV--LLYVLDAA-----DEPLKTLETLRKEVGAYDPALLRRPSLVAL----NKVDLLEE 284 (416)
T ss_dssp C----HHHHHH-HTSSSE--EEEEEETT-----SCHHHHHHHHHHHHHHHCHHHHHSCEEEEE----ECCTTSCH
T ss_pred h----HHHHHH-HHHHHh--hhEEeCCc-----cCCHHHHHHHHHHHHHHhHHhhcCCEEEEE----ECCChhhH
Confidence 1 111111 111111 11111100 223457999999999999999999999999 89998655
No 126
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=99.34 E-value=8.5e-14 Score=125.04 Aligned_cols=102 Identities=15% Similarity=0.175 Sum_probs=71.5
Q ss_pred EEEcCCcEEEEEcCCCChHHHHHHHHhcCcCCCccEEEE---cCe-------------EEEEecCCCCc------cccHH
Q psy1503 112 ITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSL---GGT-------------VSYASQEPWIF------AATIR 169 (265)
Q Consensus 112 l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~---~g~-------------i~~v~Q~~~l~------~~ti~ 169 (265)
+++.+|++++|+||||||||||+++|+ +.+|+.|+|.+ +|+ ++|++|+|.+. ..|+
T Consensus 160 ~~~l~G~i~~l~G~sG~GKSTLln~l~-~~~~~~G~i~~~~~~G~~~t~~~~~~~~~~~g~v~d~pg~~~~~l~~~lt~- 237 (302)
T 2yv5_A 160 VDYLEGFICILAGPSGVGKSSILSRLT-GEELRTQEVSEKTERGRHTTTGVRLIPFGKGSFVGDTPGFSKVEATMFVKP- 237 (302)
T ss_dssp HHHTTTCEEEEECSTTSSHHHHHHHHH-SCCCCCSCC---------CCCCEEEEEETTTEEEESSCCCSSCCGGGTSCG-
T ss_pred HhhccCcEEEEECCCCCCHHHHHHHHH-HhhCcccccccccCCCCCceeeEEEEEcCCCcEEEECcCcCcCcccccCCH-
Confidence 456689999999999999999999999 99999999998 652 69999999653 3578
Q ss_pred HHH--hcCC---------c--c---cHHHHHHHHHHhcchh-HHhcCCCCCccccCCCCCCCCHHHHHHHHHHH
Q psy1503 170 QNI--LFGL---------P--Y---LRRRYADVIRVCALQD-DFDSLPNGDFTVVGERGASLSGGQKARINLAR 226 (265)
Q Consensus 170 eni--~~~~---------~--~---~~~~~~~~~~~~~l~~-~i~~l~~g~~t~vg~~g~~LSgGqrqRialAR 226 (265)
||+ .|+. . . ...++.++++..++.+ ..+.. ...|||.+++++.|||
T Consensus 238 e~l~~~f~~~~~~~c~~~~~~~~~e~~~~v~~~l~~~~L~~~~~~~~-----------~~~ls~~~~R~~~~~~ 300 (302)
T 2yv5_A 238 REVRNYFREFLRYQCKYPDCTHTNEPGCAVKEAVKNGEISCERYKSY-----------LKIIKVYLEEIKELCR 300 (302)
T ss_dssp GGGGGGCGGGHHHHHHSTTCCSSSCTTCHHHHHHHTTSSCHHHHHHH-----------HHHTTCCCTTHHHHSS
T ss_pred HHHHHHHHHHHHccCCCCCCCCCCCCCCHHHHHHHcCCCCHHHHHHH-----------HHHHHHHHHHHHHHhc
Confidence 888 4431 0 0 1234555666666643 23332 3478998888899987
No 127
>3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B*
Probab=99.30 E-value=2.9e-12 Score=106.30 Aligned_cols=50 Identities=32% Similarity=0.334 Sum_probs=42.8
Q ss_pred CCCCCCHHHHHHHHHHHHHc----cCCCEEEEeCCCCCcCHHHHHHHHHHHHHHH
Q psy1503 210 RGASLSGGQKARINLARAVY----KNADIYLLDDPLSAVDMHVGKHLFEDCISGC 260 (265)
Q Consensus 210 ~g~~LSgGqrqRialARal~----~~~~illLDEp~s~LD~~~~~~i~~~~i~~~ 260 (265)
....||||||||++|||+++ ++|+++||||||++||+.....+.+ .+..+
T Consensus 61 ~~~~LSgGekqr~ala~~la~~~~~~~~~llLDEp~a~LD~~~~~~~~~-~l~~~ 114 (173)
T 3kta_B 61 RIEAMSGGEKALTALAFVFAIQKFKPAPFYLFDEIDAHLDDANVKRVAD-LIKES 114 (173)
T ss_dssp CGGGCCHHHHHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHH-HHHHH
T ss_pred ccccCCHHHHHHHHHHHHHHhcccCCCCEEEECCCccCCCHHHHHHHHH-HHHHh
Confidence 45789999999999999995 5679999999999999999998866 34443
No 128
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=99.28 E-value=7.9e-13 Score=120.21 Aligned_cols=121 Identities=17% Similarity=0.095 Sum_probs=80.3
Q ss_pred EEcCCcEEEEEcCCCChHHHHHHHHhcCcCCCccEEEEcCe-------------------EEEEecCCCCcc-ccHHHHH
Q psy1503 113 TFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSLGGT-------------------VSYASQEPWIFA-ATIRQNI 172 (265)
Q Consensus 113 ~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g~-------------------i~~v~Q~~~l~~-~ti~eni 172 (265)
..++|++++|+|||||||||+++.|+|.+.|++|+|.+.|. +.+++|...+++ .++++|+
T Consensus 125 ~~~~g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~~~~p~~~v~e~l 204 (328)
T 3e70_C 125 KAEKPYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYGADPAAVAYDAI 204 (328)
T ss_dssp SSCSSEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCTTCCHHHHHHHHH
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEeecccccchHHHHHHHHHHcCceEEeccccCCHHHHHHHHH
Confidence 44789999999999999999999999999999999998762 558999888876 4889998
Q ss_pred hcCCcccHHHHHHHHHHhcchhHHhcCCCCCccccCCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHH
Q psy1503 173 LFGLPYLRRRYADVIRVCALQDDFDSLPNGDFTVVGERGASLSGGQKARINLARAVYKNADIYLLDDPLSAVDMHVGKHL 252 (265)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~vg~~g~~LSgGqrqRialARal~~~~~illLDEp~s~LD~~~~~~i 252 (265)
.++.. ..... -.++.. |... .-..=.++.-.++|++..++++++||.++ +.|.....+-
T Consensus 205 ~~~~~----------~~~d~-vliDta--G~~~-------~~~~l~~eL~~i~ral~~de~llvLDa~t-~~~~~~~~~~ 263 (328)
T 3e70_C 205 QHAKA----------RGIDV-VLIDTA--GRSE-------TNRNLMDEMKKIARVTKPNLVIFVGDALA-GNAIVEQARQ 263 (328)
T ss_dssp HHHHH----------HTCSE-EEEEEC--CSCC-------TTTCHHHHHHHHHHHHCCSEEEEEEEGGG-TTHHHHHHHH
T ss_pred HHHHh----------ccchh-hHHhhc--cchh-------HHHHHHHHHHHHHHHhcCCCCEEEEecHH-HHHHHHHHHH
Confidence 65411 00000 001111 1000 00011233345899999999999999555 4555544443
Q ss_pred HH
Q psy1503 253 FE 254 (265)
Q Consensus 253 ~~ 254 (265)
++
T Consensus 264 ~~ 265 (328)
T 3e70_C 264 FN 265 (328)
T ss_dssp HH
T ss_pred HH
Confidence 33
No 129
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=99.27 E-value=5.7e-13 Score=135.23 Aligned_cols=115 Identities=18% Similarity=0.203 Sum_probs=74.2
Q ss_pred HHHhcCcCCCccEEEEcCeEEEEecCCCCccccHHHHHhcCCcc-----cH---HHH-HHHHHHhcchhHHhcCCCCCcc
Q psy1503 135 HIILNELRISSGKVSLGGTVSYASQEPWIFAATIRQNILFGLPY-----LR---RRY-ADVIRVCALQDDFDSLPNGDFT 205 (265)
Q Consensus 135 ~~l~g~~~~~~G~i~~~g~i~~v~Q~~~l~~~ti~eni~~~~~~-----~~---~~~-~~~~~~~~l~~~i~~l~~g~~t 205 (265)
.|.-+.+.|..++|+++|.-- . .+...++.+|+.|.... .. ... .+..+. .+.+..+ |+..
T Consensus 386 ~C~g~rl~~~~~~V~i~G~~i--~---~~~~~~v~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~---~~~L~~v--gL~~ 455 (916)
T 3pih_A 386 VCGGRRLNREALSVKINGLNI--H---EFTELSISEELEFLKNLNLTEREREIVGELLKEIEKR---LEFLVDV--GLEY 455 (916)
T ss_dssp TTCSCCBCTTGGGEEETTEEH--H---HHHHSBHHHHHHHHHSCCCCTTTTTTHHHHHHHHHHH---HHHHHTT--TCTT
T ss_pred hcccccCChHhcCcEECCccH--H---HhhhCCHHHHHHHHHhccCcHHHHHHHHhhHHHHHHH---HHHHHHc--CCcc
Confidence 444566788999999998411 1 12345888887652111 00 111 111111 1223333 2222
Q ss_pred -ccCCCCCCCCHHHHHHHHHHHHHccCCC--EEEEeCCCCCcCHHHHHHHHHHHHHHH
Q psy1503 206 -VVGERGASLSGGQKARINLARAVYKNAD--IYLLDDPLSAVDMHVGKHLFEDCISGC 260 (265)
Q Consensus 206 -~vg~~g~~LSgGqrqRialARal~~~~~--illLDEp~s~LD~~~~~~i~~~~i~~~ 260 (265)
..+....+|||||||||+|||||+++|+ +|||||||++||+....++++ .+..+
T Consensus 456 l~l~r~~~~LSGGe~QRv~LAraL~~~p~~~lllLDEPT~gLD~~~~~~l~~-~L~~L 512 (916)
T 3pih_A 456 LTLSRSATTLSGGESQRIRLATQIGSGLTGVIYVLDEPTIGLHPRDTERLIK-TLKKL 512 (916)
T ss_dssp CBTTSBGGGCCHHHHHHHHHHHHHHTTCCSCEEEEECTTTTCCGGGHHHHHH-HHHHT
T ss_pred ccccCCcccCCHHHHHHHHHHHHHhhCCCCcEEEEECCccCCCHHHHHHHHH-HHHHH
Confidence 1456678999999999999999999887 999999999999999998865 44443
No 130
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=99.27 E-value=2.8e-15 Score=132.94 Aligned_cols=131 Identities=17% Similarity=0.120 Sum_probs=84.0
Q ss_pred cceeeceEEEcCCcEEEEEcCCCChHHHHHHHHhcCcCCCccEEEEcCe-------------EEEEecCC-CCcc-ccHH
Q psy1503 105 LTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSLGGT-------------VSYASQEP-WIFA-ATIR 169 (265)
Q Consensus 105 ~~l~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g~-------------i~~v~Q~~-~l~~-~ti~ 169 (265)
.+++++++.+++| ++|+||||||||||+++|+|+..+ |.|.++|. +++++|.+ ..++ -++.
T Consensus 34 ~~l~~~~l~~~~G--vlL~Gp~GtGKTtLakala~~~~~--~~i~i~g~~l~~~~~~~~~~~i~~vf~~a~~~~p~i~~~ 109 (274)
T 2x8a_A 34 DQFKALGLVTPAG--VLLAGPPGCGKTLLAKAVANESGL--NFISVKGPELLNMYVGESERAVRQVFQRAKNSAPCVIFF 109 (274)
T ss_dssp HHHHHTTCCCCSE--EEEESSTTSCHHHHHHHHHHHTTC--EEEEEETTTTCSSTTHHHHHHHHHHHHHHHHTCSEEEEE
T ss_pred HHHHHcCCCCCCe--EEEECCCCCcHHHHHHHHHHHcCC--CEEEEEcHHHHhhhhhHHHHHHHHHHHHHHhcCCCeEee
Confidence 4688999999999 999999999999999999999876 67777652 23333322 1111 1222
Q ss_pred HHHhcCCcccHHHHHHHHHHhcchhHHhcCCCCCccccCCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCC-------
Q psy1503 170 QNILFGLPYLRRRYADVIRVCALQDDFDSLPNGDFTVVGERGASLSGGQKARINLARAVYKNADIYLLDDPLS------- 242 (265)
Q Consensus 170 eni~~~~~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~vg~~g~~LSgGqrqRialARal~~~~~illLDEp~s------- 242 (265)
|||......... .. .... ...+.+....|||||+||+.+++|+..+|+++ |+|+.
T Consensus 110 Deid~~~~~r~~--~~---~~~~-----------~~~~~~~l~~Lsgg~~~~~~i~ia~tn~p~~L--D~al~r~gRfd~ 171 (274)
T 2x8a_A 110 DEVDALCPRRSD--RE---TGAS-----------VRVVNQLLTEMDGLEARQQVFIMAATNRPDII--DPAILRPGRLDK 171 (274)
T ss_dssp ETCTTTCC--------------C-----------TTHHHHHHHHHHTCCSTTCEEEEEEESCGGGS--CHHHHSTTSSCE
T ss_pred ehhhhhhcccCC--Cc---chHH-----------HHHHHHHHHhhhcccccCCEEEEeecCChhhC--CHhhcCcccCCe
Confidence 333221100000 00 0000 00111223469999999999999999999985 99864
Q ss_pred -----CcCHHHHHHHHHHHH
Q psy1503 243 -----AVDMHVGKHLFEDCI 257 (265)
Q Consensus 243 -----~LD~~~~~~i~~~~i 257 (265)
--|...+.+|++..+
T Consensus 172 ~i~~~~P~~~~r~~il~~~~ 191 (274)
T 2x8a_A 172 TLFVGLPPPADRLAILKTIT 191 (274)
T ss_dssp EEECCSCCHHHHHHHHHHHT
T ss_pred EEEeCCcCHHHHHHHHHHHH
Confidence 348888888887654
No 131
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=99.27 E-value=6.1e-12 Score=105.96 Aligned_cols=111 Identities=15% Similarity=0.098 Sum_probs=70.2
Q ss_pred cceeeceE-EEcCCcEEEEEcCCCChHHHHHHHHhcCcCCCccEEEEcCeEEEEecCCCCccccHHHHHhcCCcccHHHH
Q psy1503 105 LTLNAVSI-TFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSLGGTVSYASQEPWIFAATIRQNILFGLPYLRRRY 183 (265)
Q Consensus 105 ~~l~~isl-~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g~i~~v~Q~~~l~~~ti~eni~~~~~~~~~~~ 183 (265)
+.|+++.. .+++|++++|+||+|||||||++.+++ .+ . +.+.|+..+..+-...+.+.... ...+.+
T Consensus 7 ~~LD~~l~Ggi~~G~~~~i~G~~GsGKTtl~~~l~~--~~-~------~~v~~i~~~~~~~~~~~~~~~~~-~~~~~~-- 74 (220)
T 2cvh_A 7 KSLDSLLGGGFAPGVLTQVYGPYASGKTTLALQTGL--LS-G------KKVAYVDTEGGFSPERLVQMAET-RGLNPE-- 74 (220)
T ss_dssp HHHHHHTTSSBCTTSEEEEECSTTSSHHHHHHHHHH--HH-C------SEEEEEESSCCCCHHHHHHHHHT-TTCCHH--
T ss_pred HHHHHhhcCCCcCCEEEEEECCCCCCHHHHHHHHHH--Hc-C------CcEEEEECCCCCCHHHHHHHHHh-cCCChH--
Confidence 45777665 799999999999999999999999999 22 2 23456655542222223222111 001111
Q ss_pred HHHHHHhcchhHHhcCCCCCccccCCCCCCCCHH--HHHHHHHHHHHccC-CCEEEEeCCCCCcCHH
Q psy1503 184 ADVIRVCALQDDFDSLPNGDFTVVGERGASLSGG--QKARINLARAVYKN-ADIYLLDDPLSAVDMH 247 (265)
Q Consensus 184 ~~~~~~~~l~~~i~~l~~g~~t~vg~~g~~LSgG--qrqRialARal~~~-~~illLDEp~s~LD~~ 247 (265)
+. .+.+. + ..+|++ |+|+++.+|+++.+ |+++|+|||++.+|..
T Consensus 75 -~~---------~~~~~------~----~~~~~~~~~~~~~~~~~~l~~~~~~lliiD~~~~~l~~~ 121 (220)
T 2cvh_A 75 -EA---------LSRFI------L----FTPSDFKEQRRVIGSLKKTVDSNFALVVVDSITAHYRAE 121 (220)
T ss_dssp -HH---------HHHEE------E----ECCTTTSHHHHHHHHHHHHCCTTEEEEEEECCCCCTTGG
T ss_pred -HH---------hhcEE------E----EecCCHHHHHHHHHHHHHHhhcCCCEEEEcCcHHHhhhc
Confidence 11 11100 0 123344 46789999999986 9999999999999974
No 132
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=99.25 E-value=3.3e-14 Score=128.51 Aligned_cols=118 Identities=19% Similarity=0.188 Sum_probs=73.3
Q ss_pred cEEEEEcCCCChHHHHHHHHhcCc--------CCCccEEEEcCe----------------------------EEEE---e
Q psy1503 118 QLACIIGAIGAGKTSLLHIILNEL--------RISSGKVSLGGT----------------------------VSYA---S 158 (265)
Q Consensus 118 ~~~~ivG~~GsGKSTLl~~l~g~~--------~~~~G~i~~~g~----------------------------i~~v---~ 158 (265)
++++|+|+||||||||++.|+|.. .|+.|+|.++|. ++++ +
T Consensus 5 ~v~~i~G~~GaGKTTll~~l~~~~~~~~~aVi~~d~G~i~idg~~l~~~~~~~~el~~gCicc~~~~~~~~~l~~l~~~~ 84 (318)
T 1nij_A 5 AVTLLTGFLGAGKTTLLRHILNEQHGYKIAVIENEFGEVSVDDQLIGDRATQIKTLTNGCICCSRSNELEDALLDLLDNL 84 (318)
T ss_dssp EEEEEEESSSSSCHHHHHHHHHSCCCCCEEEECSSCCSCCEEEEEECTTSCEEEEETTSCEEECTTSCHHHHHHHHHHHH
T ss_pred cEEEEEecCCCCHHHHHHHHHhhcCCCcEEEEEecCcccCccHHHHhCCCCCEEEECCCceEEcccHHHHHHHHHHHhHH
Confidence 589999999999999999999997 789999988763 2233 4
Q ss_pred cCCCC-ccccHHHHHhcCCcccH-HHH---HHHHHHhcchhHHhcCCCCCccccCCCCCCCCHHHHHHHHHHHHHccCCC
Q psy1503 159 QEPWI-FAATIRQNILFGLPYLR-RRY---ADVIRVCALQDDFDSLPNGDFTVVGERGASLSGGQKARINLARAVYKNAD 233 (265)
Q Consensus 159 Q~~~l-~~~ti~eni~~~~~~~~-~~~---~~~~~~~~l~~~i~~l~~g~~t~vg~~g~~LSgGqrqRialARal~~~~~ 233 (265)
|++.+ ++.++.||..++.+..- ..+ ....+...+...+..+.. . . .-+...++|+||+||+..+++++.+||
T Consensus 85 q~~~~~~~~~v~E~~~l~~p~~~~~~~~~~~~~~~~~~l~~~l~~vd~-~-~-~~~~~~~ls~g~~Q~~~ad~ill~k~d 161 (318)
T 1nij_A 85 DKGNIQFDRLVIECTGMADPGPIIQTFFSHEVLCQRYLLDGVIALVDA-V-H-ADEQMNQFTIAQSQVGYADRILLTKTD 161 (318)
T ss_dssp HHTSCCCSEEEEEEETTCCHHHHHHHHHHSHHHHHHEEEEEEEEEEET-T-T-HHHHHHHCHHHHHHHHTCSEEEEECTT
T ss_pred hcCCCCCCEEEEeCCCCCCHHHHHHHHhcCccccCeEEECCEEEEEEH-H-H-HHHHHhhchHHHHHHHhCCEEEEECcc
Confidence 55443 34566776665532110 111 111111122211111100 0 0 001112689999999999999999999
Q ss_pred EEEEeCC
Q psy1503 234 IYLLDDP 240 (265)
Q Consensus 234 illLDEp 240 (265)
++ |||
T Consensus 162 l~--de~ 166 (318)
T 1nij_A 162 VA--GEA 166 (318)
T ss_dssp TC--SCT
T ss_pred cC--CHH
Confidence 87 998
No 133
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=99.18 E-value=2.8e-13 Score=121.87 Aligned_cols=61 Identities=18% Similarity=0.304 Sum_probs=55.4
Q ss_pred CcEEEEeEEEEeCCCCCCcceeeceEEE-------------------cCCcEEEEEcCCCChHHHHHHHHhcCcC--CCc
Q psy1503 87 GHVSLDNVTAQWSLQNADLTLNAVSITF-------------------KPKQLACIIGAIGAGKTSLLHIILNELR--ISS 145 (265)
Q Consensus 87 ~~i~~~~~~~~~~~~~~~~~l~~isl~i-------------------~~G~~~~ivG~~GsGKSTLl~~l~g~~~--~~~ 145 (265)
..|+++||++.|. ++++++++.+ ++|++++|+||||||||||+++|.|++. |++
T Consensus 36 ~~i~~~~v~~~y~-----~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~g~iigI~G~~GsGKSTl~~~L~~~l~~~~~~ 110 (308)
T 1sq5_A 36 EDLSLEEVAEIYL-----PLSRLLNFYISSNLRRQAVLEQFLGTNGQRIPYIISIAGSVAVGKSTTARVLQALLSRWPEH 110 (308)
T ss_dssp TTCCHHHHHHTHH-----HHHHHHHHHHHHHHHHHHHHHHHHTCC-CCCCEEEEEEECTTSSHHHHHHHHHHHHTTSTTC
T ss_pred cccchHhHHHHHH-----HHHHHHHHHHhhhhhHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHHhhCCCC
Confidence 4688999999992 5899999988 8999999999999999999999999998 999
Q ss_pred cEEEE---cC
Q psy1503 146 GKVSL---GG 152 (265)
Q Consensus 146 G~i~~---~g 152 (265)
|+|.+ +|
T Consensus 111 G~i~vi~~d~ 120 (308)
T 1sq5_A 111 RRVELITTDG 120 (308)
T ss_dssp CCEEEEEGGG
T ss_pred CeEEEEecCC
Confidence 99988 65
No 134
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=99.16 E-value=7.1e-11 Score=120.15 Aligned_cols=53 Identities=28% Similarity=0.501 Sum_probs=45.4
Q ss_pred cCCCCCCCCHHHHHHHHHHHHHccC--CCEEEEeCCCCCcCHHHHHHHHHHHHHHH
Q psy1503 207 VGERGASLSGGQKARINLARAVYKN--ADIYLLDDPLSAVDMHVGKHLFEDCISGC 260 (265)
Q Consensus 207 vg~~g~~LSgGqrqRialARal~~~--~~illLDEp~s~LD~~~~~~i~~~~i~~~ 260 (265)
......+|||||||||+||++|..+ |++|||||||++||+...+.+++ .+..+
T Consensus 515 l~r~~~tLSGGEkQRV~LA~aL~~~~~~~llILDEPTagLdp~~~~~L~~-~L~~L 569 (993)
T 2ygr_A 515 LSRAAATLSGGEAQRIRLATQIGSGLVGVLYVLDEPSIGLHQRDNRRLIE-TLTRL 569 (993)
T ss_dssp TTCBGGGCCHHHHHHHHHHHHHTTCCCSCEEEEECTTTTCCHHHHHHHHH-HHHHH
T ss_pred cCCCcccCCHHHHHHHHHHHHHhhCCCCcEEEEeCcccCCCHHHHHHHHH-HHHHH
Confidence 3456789999999999999999998 59999999999999999988865 34443
No 135
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=99.16 E-value=4.4e-12 Score=113.67 Aligned_cols=88 Identities=18% Similarity=0.260 Sum_probs=60.7
Q ss_pred EEEcCCcEEEEEcCCCChHHHHHHHHhcCcCCCccEEEE---cCe-------------EEEEecCCC-------------
Q psy1503 112 ITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSL---GGT-------------VSYASQEPW------------- 162 (265)
Q Consensus 112 l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~---~g~-------------i~~v~Q~~~------------- 162 (265)
|++.+|++++|+||||||||||+++|+|+..|+.|+|.+ +|. ++|++|+|.
T Consensus 164 f~~l~geiv~l~G~sG~GKSTll~~l~g~~~~~~G~i~~~~~~g~~~t~~~~~~~~~~~g~v~q~p~~~~~~~~~~~~~~ 243 (301)
T 1u0l_A 164 KEYLKGKISTMAGLSGVGKSSLLNAINPGLKLRVSEVSEKLQRGRHTTTTAQLLKFDFGGYVVDTPGFANLEINDIEPEE 243 (301)
T ss_dssp HHHHSSSEEEEECSTTSSHHHHHHHHSTTCCCC-------------CCCSCCEEECTTSCEEESSCSSTTCCCCSSCHHH
T ss_pred HHHhcCCeEEEECCCCCcHHHHHHHhcccccccccceecccCCCCCceeeeEEEEcCCCCEEEECcCCCccCCCcCCHHH
Confidence 567789999999999999999999999999999999998 552 689999985
Q ss_pred ---Ccc-ccHHHHHhcCCc----ccHHHHHHHHHHhcch-hHHhcCC
Q psy1503 163 ---IFA-ATIRQNILFGLP----YLRRRYADVIRVCALQ-DDFDSLP 200 (265)
Q Consensus 163 ---l~~-~ti~eni~~~~~----~~~~~~~~~~~~~~l~-~~i~~l~ 200 (265)
+|+ .|+ +|+.|+.. ....++.++++..+|. +..+..|
T Consensus 244 ~~~l~~~~~~-~n~~~~~~~~~~e~~~~v~~~l~~~~L~~~~~~~~~ 289 (301)
T 1u0l_A 244 LKHYFKEFGD-KQCFFSDCNHVDEPECGVKEAVENGEIAESRYENYV 289 (301)
T ss_dssp HGGGSTTSSS-CCCSSTTCCSSSCSSCHHHHHHHHTSSCHHHHHHHH
T ss_pred HHHHHHhccc-ccCcCCCCcCCCCCCcHHHHHHHcCCCCHHHHHHHH
Confidence 354 477 88887531 1234567778888873 4444443
No 136
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=99.14 E-value=1.8e-11 Score=116.42 Aligned_cols=46 Identities=17% Similarity=0.240 Sum_probs=44.7
Q ss_pred ceeeceEEEcCCcEEEEEcCCCChHHHHHHHHhcCcCCCccEEEEcC
Q psy1503 106 TLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSLGG 152 (265)
Q Consensus 106 ~l~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g 152 (265)
+|+++||+|++ ++++|+||||||||||+++|+|+++|++|+|.++|
T Consensus 19 ~l~~vsl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g 64 (483)
T 3euj_A 19 GFFARTFDFDE-LVTTLSGGNGAGKSTTMAGFVTALIPDLTLLNFRN 64 (483)
T ss_dssp TEEEEEEECCS-SEEEEECCTTSSHHHHHHHHHHHHCCCTTTCCCCC
T ss_pred cccceEEEEcc-ceEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECC
Confidence 69999999999 99999999999999999999999999999999887
No 137
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=99.14 E-value=4.4e-11 Score=121.34 Aligned_cols=53 Identities=25% Similarity=0.448 Sum_probs=45.5
Q ss_pred cCCCCCCCCHHHHHHHHHHHHHccCC--CEEEEeCCCCCcCHHHHHHHHHHHHHHH
Q psy1503 207 VGERGASLSGGQKARINLARAVYKNA--DIYLLDDPLSAVDMHVGKHLFEDCISGC 260 (265)
Q Consensus 207 vg~~g~~LSgGqrqRialARal~~~~--~illLDEp~s~LD~~~~~~i~~~~i~~~ 260 (265)
......+|||||||||+||++|..+| ++|||||||++||+...+.+++ .+..+
T Consensus 498 ldR~~~tLSGGEkQRV~LA~aL~~~~~~~llILDEPTagLdp~~~~~L~~-~L~~L 552 (972)
T 2r6f_A 498 LSRSAGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIA-TLKSM 552 (972)
T ss_dssp SSSBGGGCCHHHHHHHHHHHHHTTCCCSCEEEEECTTTTCCGGGHHHHHH-HHHHH
T ss_pred cCCccccCCHHHHHHHHHHHHHhhCCCCCEEEEeCcccCCCHHHHHHHHH-HHHHH
Confidence 35667899999999999999999985 9999999999999999888865 44444
No 138
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=99.13 E-value=4.9e-11 Score=101.86 Aligned_cols=31 Identities=23% Similarity=0.418 Sum_probs=28.3
Q ss_pred EEcCCcEEEEEcCCCChHHHHHHHHhc--CcCC
Q psy1503 113 TFKPKQLACIIGAIGAGKTSLLHIILN--ELRI 143 (265)
Q Consensus 113 ~i~~G~~~~ivG~~GsGKSTLl~~l~g--~~~~ 143 (265)
-+++|++++|+||||||||||++.|++ ..+|
T Consensus 20 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~ 52 (243)
T 1n0w_A 20 GIETGSITEMFGEFRTGKTQICHTLAVTCQLPI 52 (243)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHHTTSCG
T ss_pred CCcCCeEEEEECCCCCcHHHHHHHHHHHHhCch
Confidence 589999999999999999999999999 5555
No 139
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=99.13 E-value=2.1e-11 Score=109.77 Aligned_cols=99 Identities=19% Similarity=0.265 Sum_probs=69.7
Q ss_pred eceEEEcCCcEEEEEcCCCChHHHHHHHHhcCcCCCccEEEEcCeEEEEecCCCCccccHHHHHhcCCcccHHHHHHHHH
Q psy1503 109 AVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSLGGTVSYASQEPWIFAATIRQNILFGLPYLRRRYADVIR 188 (265)
Q Consensus 109 ~isl~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g~i~~v~Q~~~l~~~ti~eni~~~~~~~~~~~~~~~~ 188 (265)
.+++..++|++++|+|||||||||++..|++.+.+..|+|.+ +..++ +.....++ .....+
T Consensus 96 ~~~~~~~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~l------v~~D~--~r~~a~eq-----------L~~~~~ 156 (306)
T 1vma_A 96 KLNVPPEPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVL------AAADT--FRAAAIEQ-----------LKIWGE 156 (306)
T ss_dssp CCCCCSSSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEE------EEECT--TCHHHHHH-----------HHHHHH
T ss_pred CCcccCCCCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEE------Ecccc--ccHHHHHH-----------HHHHHH
Confidence 356667899999999999999999999999999988777654 33333 22111111 111122
Q ss_pred HhcchhHHhcCCCCCccccCCCCCCCCHHHHHHH---HHHHHHccCCCEEEEeCCCC
Q psy1503 189 VCALQDDFDSLPNGDFTVVGERGASLSGGQKARI---NLARAVYKNADIYLLDDPLS 242 (265)
Q Consensus 189 ~~~l~~~i~~l~~g~~t~vg~~g~~LSgGqrqRi---alARal~~~~~illLDEp~s 242 (265)
..++ | .+ ...|+|+.|++ +|++|+..+||++|+|+|..
T Consensus 157 ~~gl-------~-----~~----~~~s~~~~~~v~~~al~~a~~~~~dvvIiDtpg~ 197 (306)
T 1vma_A 157 RVGA-------T-----VI----SHSEGADPAAVAFDAVAHALARNKDVVIIDTAGR 197 (306)
T ss_dssp HHTC-------E-----EE----CCSTTCCHHHHHHHHHHHHHHTTCSEEEEEECCC
T ss_pred HcCC-------c-----EE----ecCCccCHHHHHHHHHHHHHhcCCCEEEEECCCc
Confidence 2211 1 01 24588999999 99999999999999999975
No 140
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=99.11 E-value=8.3e-12 Score=112.44 Aligned_cols=61 Identities=23% Similarity=0.308 Sum_probs=41.5
Q ss_pred EEEcCCcEEEEEcCCCChHHHHHHHHhcCcCCCccEEEE---cCe------------EEEEecCCCCcc-----ccHHHH
Q psy1503 112 ITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSL---GGT------------VSYASQEPWIFA-----ATIRQN 171 (265)
Q Consensus 112 l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~---~g~------------i~~v~Q~~~l~~-----~ti~en 171 (265)
+++.+|++++|+||||||||||+++|+|+..|..|+|.+ +|+ ++|++|+|.+.. .|+ ||
T Consensus 168 ~~~~~G~~~~lvG~sG~GKSTLln~L~g~~~~~~G~I~~~~~~G~~tt~~~~~~~~~~g~v~dtpg~~~~~l~~lt~-e~ 246 (307)
T 1t9h_A 168 IPHFQDKTTVFAGQSGVGKSSLLNAISPELGLRTNEISEHLGRGKHTTRHVELIHTSGGLVADTPGFSSLEFTDIEE-EE 246 (307)
T ss_dssp GGGGTTSEEEEEESHHHHHHHHHHHHCC-------------------CCCCCEEEETTEEEESSCSCSSCCCTTCCH-HH
T ss_pred HhhcCCCEEEEECCCCCCHHHHHHHhcccccccccceeeecCCCcccccHHHHhhcCCEEEecCCCccccccccCCH-HH
Confidence 667899999999999999999999999999999999987 442 589999997654 477 88
Q ss_pred Hh
Q psy1503 172 IL 173 (265)
Q Consensus 172 i~ 173 (265)
+.
T Consensus 247 l~ 248 (307)
T 1t9h_A 247 LG 248 (307)
T ss_dssp HG
T ss_pred HH
Confidence 84
No 141
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=99.10 E-value=2e-11 Score=100.48 Aligned_cols=37 Identities=22% Similarity=0.261 Sum_probs=33.3
Q ss_pred eEEEcCCcEEEEEcCCCChHHHHHHHHhcCcCCCccE
Q psy1503 111 SITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGK 147 (265)
Q Consensus 111 sl~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~ 147 (265)
+|.+++|+.++|+||+|+|||||++++++.+.|.+|.
T Consensus 32 ~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~ 68 (180)
T 3ec2_A 32 NFNPEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGI 68 (180)
T ss_dssp SCCGGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCC
T ss_pred hccccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCC
Confidence 5677889999999999999999999999999877773
No 142
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=99.07 E-value=2.2e-10 Score=92.28 Aligned_cols=35 Identities=29% Similarity=0.379 Sum_probs=30.8
Q ss_pred ceeeceEEEcCCcEEEEEcCCCChHHHHHHHHhcCcCCCcc
Q psy1503 106 TLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSG 146 (265)
Q Consensus 106 ~l~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G 146 (265)
+|+++ +|+.++|+||+|||||||++++.+.+.+ +|
T Consensus 30 ~l~~~-----~g~~~~l~G~~G~GKTtL~~~i~~~~~~-~g 64 (149)
T 2kjq_A 30 VLRHK-----HGQFIYVWGEEGAGKSHLLQAWVAQALE-AG 64 (149)
T ss_dssp HCCCC-----CCSEEEEESSSTTTTCHHHHHHHHHHHT-TT
T ss_pred HHHhc-----CCCEEEEECCCCCCHHHHHHHHHHHHHh-cC
Confidence 45555 8999999999999999999999999887 45
No 143
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=99.06 E-value=3.2e-10 Score=101.41 Aligned_cols=125 Identities=14% Similarity=0.081 Sum_probs=82.7
Q ss_pred EEEEeEEEEeCCCCCCcceeeceEEEcCCcEEEEEcCCCChHHHHHHHHhcCcCCCccEEEEcCeEEEEecCCCCccccH
Q psy1503 89 VSLDNVTAQWSLQNADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSLGGTVSYASQEPWIFAATI 168 (265)
Q Consensus 89 i~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g~i~~v~Q~~~l~~~ti 168 (265)
+.++++++.|+.. .++++|+ +|++++++|++|+||||++..|++.+.+..|+|.+ +..++.- +.+.
T Consensus 77 ~~~~~l~~~~~~~-----~~~i~~~--~~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l------~~~d~~~-~~~~ 142 (295)
T 1ls1_A 77 TVYEALKEALGGE-----ARLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLL------VAADTQR-PAAR 142 (295)
T ss_dssp HHHHHHHHHTTSS-----CCCCCCC--SSEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEE------EECCSSC-HHHH
T ss_pred HHHHHHHHHHCCC-----CceeecC--CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEE------ecCCccc-HhHH
Confidence 4556677777431 1678888 99999999999999999999999999988887765 3333320 1111
Q ss_pred HHHHhcCCcccHHHHHHHHHHhcchhHHhcCCCCCccccCCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCC-CCCcCHH
Q psy1503 169 RQNILFGLPYLRRRYADVIRVCALQDDFDSLPNGDFTVVGERGASLSGGQKARINLARAVYKNADIYLLDDP-LSAVDMH 247 (265)
Q Consensus 169 ~eni~~~~~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~vg~~g~~LSgGqrqRialARal~~~~~illLDEp-~s~LD~~ 247 (265)
+ .+....+..++ ..+|.+ ..-...+-+|.+|+++...++|++|+|+| ++++|..
T Consensus 143 -~-----------ql~~~~~~~~l----~~~~~~---------~~~~p~~l~~~~l~~~~~~~~D~viiDtpp~~~~d~~ 197 (295)
T 1ls1_A 143 -E-----------QLRLLGEKVGV----PVLEVM---------DGESPESIRRRVEEKARLEARDLILVDTAGRLQIDEP 197 (295)
T ss_dssp -H-----------HHHHHHHHHTC----CEEECC---------TTCCHHHHHHHHHHHHHHHTCCEEEEECCCCSSCCHH
T ss_pred -H-----------HHHHhcccCCe----EEEEcC---------CCCCHHHHHHHHHHHHHhCCCCEEEEeCCCCccccHH
Confidence 1 01111111111 112211 11234456789999998899999999999 9999987
Q ss_pred HHHHH
Q psy1503 248 VGKHL 252 (265)
Q Consensus 248 ~~~~i 252 (265)
....+
T Consensus 198 ~~~~l 202 (295)
T 1ls1_A 198 LMGEL 202 (295)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 76665
No 144
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.05 E-value=2e-10 Score=103.75 Aligned_cols=107 Identities=12% Similarity=0.065 Sum_probs=57.8
Q ss_pred cEEEEEcCCCChHHHHHHHHhc-CcCCCccEEEEcCe-----------EEEEecCCCCc-cccHHHHHhcCCcccHHHHH
Q psy1503 118 QLACIIGAIGAGKTSLLHIILN-ELRISSGKVSLGGT-----------VSYASQEPWIF-AATIRQNILFGLPYLRRRYA 184 (265)
Q Consensus 118 ~~~~ivG~~GsGKSTLl~~l~g-~~~~~~G~i~~~g~-----------i~~v~Q~~~l~-~~ti~eni~~~~~~~~~~~~ 184 (265)
..+.|+||+|+||||+++++++ ++.|..|.+.++|. +++++|.+++. +.+- .+. .......
T Consensus 37 ~~~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~-~~~~~~~ 110 (354)
T 1sxj_E 37 PHLLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASNRKLELNVVSSPYHLEITPSD-----MGN-NDRIVIQ 110 (354)
T ss_dssp CCEEEECSTTSSHHHHHHTHHHHHSCTTCCC------------------CCEECSSEEEECCC----------CCHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeecccccccceeeeecccceEEecHhh-----cCC-cchHHHH
Confidence 3499999999999999999999 78999999987752 56667766542 1110 000 0111122
Q ss_pred HHHHHhcchhHHhcCCCCCccccCCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHH
Q psy1503 185 DVIRVCALQDDFDSLPNGDFTVVGERGASLSGGQKARINLARAVYKNADIYLLDDPLSAVDMHVGKHLFE 254 (265)
Q Consensus 185 ~~~~~~~l~~~i~~l~~g~~t~vg~~g~~LSgGqrqRialARal~~~~~illLDEp~s~LD~~~~~~i~~ 254 (265)
+.++... ...+ .+..+ .||| +..+|+++|+|||++ ||......+++
T Consensus 111 ~~i~~~~-----~~~~--~~~~~-----~ls~-----------l~~~~~vlilDE~~~-L~~~~~~~L~~ 156 (354)
T 1sxj_E 111 ELLKEVA-----QMEQ--VDFQD-----SKDG-----------LAHRYKCVIINEANS-LTKDAQAALRR 156 (354)
T ss_dssp HHHHHHT-----TTTC------------------------------CCEEEEEECTTS-SCHHHHHHHHH
T ss_pred HHHHHHH-----Hhcc--ccccc-----cccc-----------cCCCCeEEEEeCccc-cCHHHHHHHHH
Confidence 2222211 1111 11111 4566 678999999999999 99998777654
No 145
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=99.03 E-value=1.5e-10 Score=111.04 Aligned_cols=45 Identities=20% Similarity=0.223 Sum_probs=41.3
Q ss_pred CCCC-CHHHHHHHHHHHHHccCC--CEEEEeCCCCCcCHHHHHHHHHH
Q psy1503 211 GASL-SGGQKARINLARAVYKNA--DIYLLDDPLSAVDMHVGKHLFED 255 (265)
Q Consensus 211 g~~L-SgGqrqRialARal~~~~--~illLDEp~s~LD~~~~~~i~~~ 255 (265)
...| ||||||||+||||++.+| +++||||||++||+.+...|.+.
T Consensus 394 ~~~l~SgG~~qrv~la~~l~~~~~~~~lilDEp~~gld~~~~~~i~~~ 441 (517)
T 4ad8_A 394 LSDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQ 441 (517)
T ss_dssp SSSSSCSSHHHHHHHHHHHHHCCCSSEEEECSCSSSCCTHHHHHHHHH
T ss_pred HHhcCCHHHHHHHHHHHHHHhCCCCCEEEEeCCcCCCCHHHHHHHHHH
Confidence 4567 999999999999999999 99999999999999999888663
No 146
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=98.99 E-value=3.2e-11 Score=100.64 Aligned_cols=59 Identities=27% Similarity=0.318 Sum_probs=42.8
Q ss_pred eEEEcCCcEEEEEcCCCChHHHHHHHHhcCcCCCccEEEEcC-------------eEEEEecCCCCccc-cHHHHHh
Q psy1503 111 SITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSLGG-------------TVSYASQEPWIFAA-TIRQNIL 173 (265)
Q Consensus 111 sl~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g-------------~i~~v~Q~~~l~~~-ti~eni~ 173 (265)
|+++++|++++|+||||||||||+++|+|+++ .+.+++ .++|++|++..|.. ++.+|+.
T Consensus 1 s~~m~~g~ii~l~Gp~GsGKSTl~~~L~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (205)
T 3tr0_A 1 SNAMNKANLFIISAPSGAGKTSLVRALVKALA----EIKISISHTTRPKRPGDQEGVDYFFIDETRFQAMVKEGAFL 73 (205)
T ss_dssp ----CCCCEEEEECCTTSCHHHHHHHHHHHSS----SEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHHTCEE
T ss_pred CCcCCCCcEEEEECcCCCCHHHHHHHHHhhCC----CeEEeceeccCCCchhHhcCceEEeccHHHHHHHHhcCcEE
Confidence 56788999999999999999999999999864 344443 26799998877653 5555443
No 147
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=98.95 E-value=2.1e-12 Score=117.21 Aligned_cols=80 Identities=21% Similarity=0.335 Sum_probs=60.8
Q ss_pred EEEeEEEEeCCCCCCcceeeceEEEcCC-------cEEEEEcCCCChHHHHHHHHhcCc----CCCccEEEEc-------
Q psy1503 90 SLDNVTAQWSLQNADLTLNAVSITFKPK-------QLACIIGAIGAGKTSLLHIILNEL----RISSGKVSLG------- 151 (265)
Q Consensus 90 ~~~~~~~~~~~~~~~~~l~~isl~i~~G-------~~~~ivG~~GsGKSTLl~~l~g~~----~~~~G~i~~~------- 151 (265)
+.++++..|+. ..+++++++.+++| +.++|+||||+|||||+++|++++ .+++|.+..+
T Consensus 20 r~~~l~~~~g~---~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~~~~~~l~~~ 96 (334)
T 1in4_A 20 RPKSLDEFIGQ---ENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQGDMAAI 96 (334)
T ss_dssp SCSSGGGCCSC---HHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCCSHHHHHHH
T ss_pred CCccHHHccCc---HHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechHhcCHHHHHHH
Confidence 33444444532 35789999999876 899999999999999999999998 6777766532
Q ss_pred ------CeEEEEecCCCCccccHHHHHh
Q psy1503 152 ------GTVSYASQEPWIFAATIRQNIL 173 (265)
Q Consensus 152 ------g~i~~v~Q~~~l~~~ti~eni~ 173 (265)
+.|.+++|.+.+.+ ++.|++.
T Consensus 97 ~~~~~~~~v~~iDE~~~l~~-~~~e~L~ 123 (334)
T 1in4_A 97 LTSLERGDVLFIDEIHRLNK-AVEELLY 123 (334)
T ss_dssp HHHCCTTCEEEEETGGGCCH-HHHHHHH
T ss_pred HHHccCCCEEEEcchhhcCH-HHHHHHH
Confidence 24899999877765 7777764
No 148
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=98.94 E-value=7.3e-13 Score=116.82 Aligned_cols=137 Identities=17% Similarity=0.168 Sum_probs=83.9
Q ss_pred EEeEEEEeCCCCCCcceeeceEEEcCCcEEEEEcCCCChHHHHHHHHhcCcCCCccEEEEcCe-------------EEEE
Q psy1503 91 LDNVTAQWSLQNADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSLGGT-------------VSYA 157 (265)
Q Consensus 91 ~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g~-------------i~~v 157 (265)
++++.+.|. ...+++++++++++| ++|+||+|||||||+++|.+... .|.|.+++. ++++
T Consensus 52 l~~l~~~~~---~~~~l~~~~~~~~~g--vll~Gp~GtGKTtl~~~i~~~~~--~~~i~~~~~~~~~~~~~~~~~~i~~~ 124 (278)
T 1iy2_A 52 LKEIVEFLK---NPSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR--VPFITASGSDFVEMFVGVGAARVRDL 124 (278)
T ss_dssp HHHHHHHHH---CHHHHHHTTCCCCCE--EEEECCTTSSHHHHHHHHHHHTT--CCEEEEEHHHHHHSTTTHHHHHHHHH
T ss_pred HHHHHHHHH---CHHHHHHcCCCCCCe--EEEECCCcChHHHHHHHHHHHcC--CCEEEecHHHHHHHHhhHHHHHHHHH
Confidence 344554453 235789999999999 99999999999999999999875 677777642 3334
Q ss_pred ecCCC-Ccc-ccHHHHHh-cCCccc------HHHHHHHHHHhcchhHHhcCCCCCccccCCCCCCCCHHHHHHHHHHHHH
Q psy1503 158 SQEPW-IFA-ATIRQNIL-FGLPYL------RRRYADVIRVCALQDDFDSLPNGDFTVVGERGASLSGGQKARINLARAV 228 (265)
Q Consensus 158 ~Q~~~-l~~-~ti~eni~-~~~~~~------~~~~~~~~~~~~l~~~i~~l~~g~~t~vg~~g~~LSgGqrqRialARal 228 (265)
+|.+. .++ -++.|||. ++.... .+...+. +.. -...|||||+||+.+++|+
T Consensus 125 ~~~~~~~~~~i~~iDeid~l~~~~~~~~~~~~~~~~~~---------~~~-----------ll~~lsgg~~~~~~i~~a~ 184 (278)
T 1iy2_A 125 FETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQT---------LNQ-----------LLVEMDGFEKDTAIVVMAA 184 (278)
T ss_dssp HHHHHTSCSEEEEEETHHHHHCC--------CHHHHHH---------HHH-----------HHHHHTTCCTTCCEEEEEE
T ss_pred HHHHHhcCCcEEehhhhHhhhcccccccCCcchHHHHH---------HHH-----------HHHHHhCCCCCCCEEEEEe
Confidence 44321 122 13334441 211100 0000000 111 1135899999999999999
Q ss_pred ccCCCEEEEeCCCC------------CcCHHHHHHHHHHH
Q psy1503 229 YKNADIYLLDDPLS------------AVDMHVGKHLFEDC 256 (265)
Q Consensus 229 ~~~~~illLDEp~s------------~LD~~~~~~i~~~~ 256 (265)
..+|++ +|+++. -.|......|++..
T Consensus 185 t~~p~~--ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~ 222 (278)
T 1iy2_A 185 TNRPDI--LDPALLRPGRFDRQIAIDAPDVKGREQILRIH 222 (278)
T ss_dssp ESCTTS--SCHHHHSTTSSCCEEECCCCCHHHHHHHHHHH
T ss_pred cCCchh--CCHhHcCCCcCCeEEEeCCcCHHHHHHHHHHH
Confidence 999987 576542 23566666666543
No 149
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=98.92 E-value=9.2e-10 Score=102.49 Aligned_cols=34 Identities=18% Similarity=0.412 Sum_probs=28.8
Q ss_pred EEcCCcEEEEEcCCCChHHHHHHH--HhcCcCCCcc
Q psy1503 113 TFKPKQLACIIGAIGAGKTSLLHI--ILNELRISSG 146 (265)
Q Consensus 113 ~i~~G~~~~ivG~~GsGKSTLl~~--l~g~~~~~~G 146 (265)
-|++|++++|+||+|||||||++. +.+..+++.|
T Consensus 174 GI~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~G 209 (400)
T 3lda_A 174 GVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIG 209 (400)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGT
T ss_pred CcCCCcEEEEEcCCCCChHHHHHHHHHHhccCcccC
Confidence 689999999999999999999994 4577766554
No 150
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=98.92 E-value=1.3e-09 Score=90.41 Aligned_cols=135 Identities=16% Similarity=0.198 Sum_probs=72.5
Q ss_pred EEEEEcCCCChHHHHHHHHhcCcCC-----------CccEEEEcCe-EEE-EecCCC--CccccHHHHHhcCC------c
Q psy1503 119 LACIIGAIGAGKTSLLHIILNELRI-----------SSGKVSLGGT-VSY-ASQEPW--IFAATIRQNILFGL------P 177 (265)
Q Consensus 119 ~~~ivG~~GsGKSTLl~~l~g~~~~-----------~~G~i~~~g~-i~~-v~Q~~~--l~~~ti~eni~~~~------~ 177 (265)
.++|+|++|||||||++.+.|...+ ..|+|.++|. +.+ +...+. -+...+.....-.. +
T Consensus 31 kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~d 110 (191)
T 1oix_A 31 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRAITSAYYRGAVGALLVYD 110 (191)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEETTEEEEEEEEEECSCCSSSCCCHHHHTTCCEEEEEEE
T ss_pred EEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEECCCCcchhhhhHHHhhcCCEEEEEEE
Confidence 6899999999999999999998765 5788888884 221 111111 11111222111000 0
Q ss_pred -ccHHHHHHHHHHhcchhHHhc-CCCCC-ccccCCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHH
Q psy1503 178 -YLRRRYADVIRVCALQDDFDS-LPNGD-FTVVGERGASLSGGQKARINLARAVYKNADIYLLDDPLSAVDMHVGKHLFE 254 (265)
Q Consensus 178 -~~~~~~~~~~~~~~l~~~i~~-l~~g~-~t~vg~~g~~LSgGqrqRialARal~~~~~illLDEp~s~LD~~~~~~i~~ 254 (265)
.+...+..+.... ..+.. .+... --.++.+ ..|..-..+.+.+||+++.+|++.++| ||++|.....++++
T Consensus 111 ~~~~~s~~~~~~~~---~~~~~~~~~~~~i~~v~nK-~Dl~~~~~~~~~~a~~l~~~~~~~~ld--~Sald~~~v~~l~~ 184 (191)
T 1oix_A 111 IAKHLTYENVERWL---KELRDHADSNIVIMLVGNK-SDLRHLRAVPTDEARAFAEKNGLSFIE--TSALDSTNVEAAFQ 184 (191)
T ss_dssp TTCHHHHHTHHHHH---HHHHHHSCTTCEEEEEEEC-GGGGGGCCSCHHHHHHHHHHTTCEEEE--CCTTTCTTHHHHHH
T ss_pred CcCHHHHHHHHHHH---HHHHHhcCCCCcEEEEEEC-cccccccccCHHHHHHHHHHcCCEEEE--EeCCCCCCHHHHHH
Confidence 0111111110000 00000 00000 0011211 112221223478899999999999999 99999999999988
Q ss_pred HHHHH
Q psy1503 255 DCISG 259 (265)
Q Consensus 255 ~~i~~ 259 (265)
.+...
T Consensus 185 ~l~~~ 189 (191)
T 1oix_A 185 TILTE 189 (191)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 76543
No 151
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=98.91 E-value=3.1e-10 Score=97.11 Aligned_cols=55 Identities=18% Similarity=0.183 Sum_probs=32.1
Q ss_pred cceeeceEEEcCCcEEEEEcCCCChHHHHHHHHh-cCc------------CCCccEEEEcCeEEEEecCCC
Q psy1503 105 LTLNAVSITFKPKQLACIIGAIGAGKTSLLHIIL-NEL------------RISSGKVSLGGTVSYASQEPW 162 (265)
Q Consensus 105 ~~l~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~-g~~------------~~~~G~i~~~g~i~~v~Q~~~ 162 (265)
...+++||++++|++++|+||||||||||+++|+ |++ +|..|++ +| +.|.++++.
T Consensus 15 ~~~~~~sl~v~~G~ii~l~Gp~GsGKSTl~~~L~~~~~~~~~~~~~~~~~~~~~g~~--~g-~~~~~~~~~ 82 (231)
T 3lnc_A 15 QTQGPGSMLKSVGVILVLSSPSGCGKTTVANKLLEKQKNNIVKSVSVTTRAARKGEK--EG-KDYYFVDRE 82 (231)
T ss_dssp -------CCEECCCEEEEECSCC----CHHHHHHC----CEEECCCEESSCCCTTCC--BT-TTBEECCHH
T ss_pred cccCCCCcccCCCCEEEEECCCCCCHHHHHHHHHhcCCCCcccccccCCCCCCcccc--CC-CeEEEecHH
Confidence 4578999999999999999999999999999999 998 6666655 33 335555443
No 152
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=98.90 E-value=8.5e-13 Score=114.57 Aligned_cols=138 Identities=16% Similarity=0.167 Sum_probs=84.6
Q ss_pred EEEeEEEEeCCCCCCcceeeceEEEcCCcEEEEEcCCCChHHHHHHHHhcCcCCCccEEEEcCe-------------EEE
Q psy1503 90 SLDNVTAQWSLQNADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSLGGT-------------VSY 156 (265)
Q Consensus 90 ~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g~-------------i~~ 156 (265)
+++++.+.|. ...+++++++++++| +.|+||+|||||||+++|.+... .|.+.+++. +++
T Consensus 27 ~l~~l~~~~~---~~~~~~~~~~~~~~g--~ll~G~~G~GKTtl~~~i~~~~~--~~~i~~~~~~~~~~~~~~~~~~i~~ 99 (254)
T 1ixz_A 27 ELKEIVEFLK---NPSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR--VPFITASGSDFVEMFVGVGAARVRD 99 (254)
T ss_dssp HHHHHHHHHH---CHHHHHHTTCCCCSE--EEEECCTTSSHHHHHHHHHHHTT--CCEEEEEHHHHHHSCTTHHHHHHHH
T ss_pred HHHHHHHHHH---CHHHHHHcCCCCCCe--EEEECCCCCCHHHHHHHHHHHhC--CCEEEeeHHHHHHHHhhHHHHHHHH
Confidence 4455555553 235789999999999 99999999999999999999875 677777642 233
Q ss_pred EecCCC-Ccc-ccHHHHH-hcCCccc------HHHHHHHHHHhcchhHHhcCCCCCccccCCCCCCCCHHHHHHHHHHHH
Q psy1503 157 ASQEPW-IFA-ATIRQNI-LFGLPYL------RRRYADVIRVCALQDDFDSLPNGDFTVVGERGASLSGGQKARINLARA 227 (265)
Q Consensus 157 v~Q~~~-l~~-~ti~eni-~~~~~~~------~~~~~~~~~~~~l~~~i~~l~~g~~t~vg~~g~~LSgGqrqRialARa 227 (265)
++|... .++ -++.|+| .++.... .+...+. +.. -...|||||+||+.+++|
T Consensus 100 ~~~~~~~~~~~i~~~Deid~l~~~~~~~~~~~~~~~~~~---------~~~-----------ll~~l~g~~~~~~~i~~a 159 (254)
T 1ixz_A 100 LFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQT---------LNQ-----------LLVEMDGFEKDTAIVVMA 159 (254)
T ss_dssp HHHHHTTSSSEEEEEETHHHHHC---------CHHHHHH---------HHH-----------HHHHHHTCCTTCCEEEEE
T ss_pred HHHHHHhcCCeEEEehhhhhhhcccCccccccchHHHHH---------HHH-----------HHHHHhCCCCCCCEEEEE
Confidence 333321 111 1333333 1111000 0000000 011 113578999999999999
Q ss_pred HccCCCEEEEeCCCCC------------cCHHHHHHHHHHH
Q psy1503 228 VYKNADIYLLDDPLSA------------VDMHVGKHLFEDC 256 (265)
Q Consensus 228 l~~~~~illLDEp~s~------------LD~~~~~~i~~~~ 256 (265)
+..+|++ +|+++-. .|...+.+|++..
T Consensus 160 ~t~~p~~--ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~ 198 (254)
T 1ixz_A 160 ATNRPDI--LDPALLRPGRFDRQIAIDAPDVKGREQILRIH 198 (254)
T ss_dssp EESCGGG--SCGGGGSTTSSCEEEECCSCCHHHHHHHHHHH
T ss_pred ccCCchh--CCHHHcCCCcCCeEEeeCCcCHHHHHHHHHHH
Confidence 9999987 6776642 3666667776544
No 153
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=98.90 E-value=1.4e-09 Score=101.67 Aligned_cols=44 Identities=25% Similarity=0.318 Sum_probs=40.1
Q ss_pred CCCCHHHHHHHHHHHHHc----cCCCEEEEeCCCCCcCHHHHHHHHHH
Q psy1503 212 ASLSGGQKARINLARAVY----KNADIYLLDDPLSAVDMHVGKHLFED 255 (265)
Q Consensus 212 ~~LSgGqrqRialARal~----~~~~illLDEp~s~LD~~~~~~i~~~ 255 (265)
..||||||||++||++|+ .+|+++|||||+++||+.....+.+.
T Consensus 332 ~~lS~Gq~~~~~la~~la~~~~~~~~~lllDEp~~~LD~~~~~~l~~~ 379 (430)
T 1w1w_A 332 EYLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAY 379 (430)
T ss_dssp GGSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHH
T ss_pred ccCCcchHHHHHHHHHHHHhcCCCCCEEEeCCCcccCCHHHHHHHHHH
Confidence 359999999999999998 68999999999999999999888663
No 154
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=98.89 E-value=1.8e-09 Score=99.26 Aligned_cols=45 Identities=29% Similarity=0.405 Sum_probs=40.4
Q ss_pred CCCCCHHHHHHH------HHHHHHccC-CCEEEEeCCCCCcCHHHHHHHHHH
Q psy1503 211 GASLSGGQKARI------NLARAVYKN-ADIYLLDDPLSAVDMHVGKHLFED 255 (265)
Q Consensus 211 g~~LSgGqrqRi------alARal~~~-~~illLDEp~s~LD~~~~~~i~~~ 255 (265)
...|||||+||+ ++||+++.+ |+++||||||++||+.....+.+.
T Consensus 278 ~~~lS~G~~~~~~lal~la~a~~l~~~~~~~lllDEp~~~LD~~~~~~l~~~ 329 (371)
T 3auy_A 278 IDNLSGGEQIAVALSLRLAIANALIGNRVECIILDEPTVYLDENRRAKLAEI 329 (371)
T ss_dssp GGGSCHHHHHHHHHHHHHHHHHHHHSSCCSEEEEESTTTTCCHHHHHHHHHH
T ss_pred hHhcCHHHHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCCcCCHHHHHHHHHH
Confidence 358999999988 667999999 999999999999999999988664
No 155
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=98.88 E-value=2e-10 Score=95.27 Aligned_cols=118 Identities=21% Similarity=0.292 Sum_probs=47.4
Q ss_pred CcEEEEEcCCCChHHHHHHHHhcCcC-------------CCccEEEEcCeEEEEecCCCCccccH-HHHHh---------
Q psy1503 117 KQLACIIGAIGAGKTSLLHIILNELR-------------ISSGKVSLGGTVSYASQEPWIFAATI-RQNIL--------- 173 (265)
Q Consensus 117 G~~~~ivG~~GsGKSTLl~~l~g~~~-------------~~~G~i~~~g~i~~v~Q~~~l~~~ti-~eni~--------- 173 (265)
|++++|+||||||||||+++|+|+++ |..|++ +| +.|.+|.+..|..-+ .+++.
T Consensus 1 ~~ii~l~GpsGaGKsTl~~~L~~~~~~~~~~~~~~~tr~~~~ge~--~g-~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~ 77 (186)
T 3a00_A 1 SRPIVISGPSGTGKSTLLKKLFAEYPDSFGFSVSSTTRTPRAGEV--NG-KDYNFVSVDEFKSMIKNNEFIEWAQFSGNY 77 (186)
T ss_dssp CCCEEEESSSSSSHHHHHHHHHHHCGGGEECCCEEECSCCCTTCC--BT-TTBEECCHHHHHHHHHTTCEEEEEEETTEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCCccceEEeeccccCCCCCcc--CC-eeeeecCHHHHHHHHhhcceeeEEEEecee
Confidence 57899999999999999999999998 777765 44 345555433332111 11110
Q ss_pred cCCcccHHHHHHHHHHh---cc------hhHHh-----------cCC---CCCccccCCCCCCCCHHHHHHHHHHHHHc-
Q psy1503 174 FGLPYLRRRYADVIRVC---AL------QDDFD-----------SLP---NGDFTVVGERGASLSGGQKARINLARAVY- 229 (265)
Q Consensus 174 ~~~~~~~~~~~~~~~~~---~l------~~~i~-----------~l~---~g~~t~vg~~g~~LSgGqrqRialARal~- 229 (265)
+|. ..+.+.++++.. -+ ...+. ..| .-+...+.++|..-....++|++-|+.-+
T Consensus 78 yg~--~~~~i~~~l~~g~~~il~~~~~g~~~l~~~~~~~~~~i~i~~p~~~~l~~Rl~~Rg~~~~~~i~~rl~~~~~~~~ 155 (186)
T 3a00_A 78 YGS--TVASVKQVSKSGKTCILDIDMQGVKSVKAIPELNARFLFIAPPSVEDLKKRLEGRGTETEESINKRLSAAQAELA 155 (186)
T ss_dssp EEE--EHHHHHHHHHTTCEEEEECCHHHHHHHHTCGGGCCEEEEEECSCC------------------------------
T ss_pred ccC--cHHHHHHHHHcCCeEEEEEcHHHHHHHHHhcCCCeEEEEEECcCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH
Confidence 111 112223322220 00 00011 111 23334455677777788899999998755
Q ss_pred ----cCCCEEEEeC
Q psy1503 230 ----KNADIYLLDD 239 (265)
Q Consensus 230 ----~~~~illLDE 239 (265)
..+|.+|..+
T Consensus 156 ~~~~~~~d~vi~nd 169 (186)
T 3a00_A 156 YAETGAHDKVIVND 169 (186)
T ss_dssp ---CCCCSEEEECS
T ss_pred hhcccCCcEEEECc
Confidence 5678888776
No 156
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=98.87 E-value=3.4e-11 Score=117.58 Aligned_cols=144 Identities=10% Similarity=0.126 Sum_probs=87.6
Q ss_pred CcceeeceEEEcCCcEEEEEcCCCChHHHHHHHHhcCcCCCc-cEEEEcC--------eEEEEecCC-------------
Q psy1503 104 DLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISS-GKVSLGG--------TVSYASQEP------------- 161 (265)
Q Consensus 104 ~~~l~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~-G~i~~~g--------~i~~v~Q~~------------- 161 (265)
..+++++++.+++|+.+.|+||+|+|||||+++|++++++.. |.+.+.+ .++++|+..
T Consensus 47 ~~~l~~l~~~i~~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~~~~~~~~~~~~~~p~i~~~p~g~~~~~~e~~~~~~~ 126 (604)
T 3k1j_A 47 EHAVEVIKTAANQKRHVLLIGEPGTGKSMLGQAMAELLPTETLEDILVFPNPEDENMPRIKTVPACQGRRIVEKYREKAK 126 (604)
T ss_dssp HHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHTSCCSSCEEEEEECCTTCTTSCEEEEEETTHHHHHHHHHHHHHH
T ss_pred hhhHhhccccccCCCEEEEEeCCCCCHHHHHHHHhccCCcccCCeEEEeCCcccccCCcEEEEecchHHHHHHHHHHhhc
Confidence 457899999999999999999999999999999999999887 6676643 377776643
Q ss_pred ---------CCcc-ccHHHHHhcCCcccH-HHHHHHHHHhcchhHHhcCCCCCccccCCCCCCCCHHHHHHHHHHHHHcc
Q psy1503 162 ---------WIFA-ATIRQNILFGLPYLR-RRYADVIRVCALQDDFDSLPNGDFTVVGERGASLSGGQKARINLARAVYK 230 (265)
Q Consensus 162 ---------~l~~-~ti~eni~~~~~~~~-~~~~~~~~~~~l~~~i~~l~~g~~t~vg~~g~~LSgGqrqRialARal~~ 230 (265)
|.+. .++.+|+..+..... ..+... ........+..... -......+|+|++|++..++....
T Consensus 127 ~~~~~r~~~~~~~~~~~~~nl~v~~~~~~~~~~v~~-~~~~~~~L~G~~~~-----~~~~~g~~~~g~~~~i~~g~~~~a 200 (604)
T 3k1j_A 127 SQESVKSSNMRLKSTVLVPKLLVDNCGRTKAPFIDA-TGAHAGALLGDVRH-----DPFQSGGLGTPAHERVEPGMIHRA 200 (604)
T ss_dssp HHTCC-----------CCCEEEECCTTCSSCCEEEC-TTCCHHHHHCEECC-----CCC----CCCCGGGGEECCHHHHT
T ss_pred cchhhhhhcccccccccccceeeccccCCCCCEEEc-CCCCHHhcCceEEe-----chhhcCCccccccccccCceeeec
Confidence 1111 122222221100000 000000 00000001111100 001224599999999999999999
Q ss_pred CCCEEEEeCCCCCcCHHHHHHHHH
Q psy1503 231 NADIYLLDDPLSAVDMHVGKHLFE 254 (265)
Q Consensus 231 ~~~illLDEp~s~LD~~~~~~i~~ 254 (265)
++.+++|||.-. |++.....+++
T Consensus 201 ~~gvL~LDEi~~-l~~~~q~~Ll~ 223 (604)
T 3k1j_A 201 HKGVLFIDEIAT-LSLKMQQSLLT 223 (604)
T ss_dssp TTSEEEETTGGG-SCHHHHHHHHH
T ss_pred CCCEEEEechhh-CCHHHHHHHHH
Confidence 999999999987 78887766644
No 157
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=98.86 E-value=3.2e-09 Score=94.92 Aligned_cols=98 Identities=12% Similarity=0.160 Sum_probs=65.6
Q ss_pred cCCcEEEEEcCCCChHHHHHHHHhcCcCCCccEEEEcCeEEEEecCCCCccccHHHHHhcCCcccHHHHHHHHHHhcchh
Q psy1503 115 KPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSLGGTVSYASQEPWIFAATIRQNILFGLPYLRRRYADVIRVCALQD 194 (265)
Q Consensus 115 ~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g~i~~v~Q~~~l~~~ti~eni~~~~~~~~~~~~~~~~~~~l~~ 194 (265)
++|++++++|||||||||++..|++.+.+.+|. ++.++.++++ ..+..+++.. ..+..+
T Consensus 103 ~~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~-----~V~lv~~D~~--r~~a~eqL~~-----------~~~~~g--- 161 (296)
T 2px0_A 103 IHSKYIVLFGSTGAGKTTTLAKLAAISMLEKHK-----KIAFITTDTY--RIAAVEQLKT-----------YAELLQ--- 161 (296)
T ss_dssp CCSSEEEEEESTTSSHHHHHHHHHHHHHHTTCC-----CEEEEECCCS--STTHHHHHHH-----------HHTTTT---
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCC-----EEEEEecCcc--cchHHHHHHH-----------HHHhcC---
Confidence 479999999999999999999999999887772 4678888873 3344443321 011111
Q ss_pred HHhcCCCCCccccCCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCcCHHHHHH
Q psy1503 195 DFDSLPNGDFTVVGERGASLSGGQKARINLARAVYKNADIYLLDDPLSAVDMHVGKH 251 (265)
Q Consensus 195 ~i~~l~~g~~t~vg~~g~~LSgGqrqRialARal~~~~~illLDEp~s~LD~~~~~~ 251 (265)
+|. ... .+ ++..+.+|+++ .++|++|+| |+++|......
T Consensus 162 ----l~~----~~~-----~~-~~~l~~al~~~--~~~dlvIiD--T~G~~~~~~~~ 200 (296)
T 2px0_A 162 ----APL----EVC-----YT-KEEFQQAKELF--SEYDHVFVD--TAGRNFKDPQY 200 (296)
T ss_dssp ----CCC----CBC-----SS-HHHHHHHHHHG--GGSSEEEEE--CCCCCTTSHHH
T ss_pred ----CCe----Eec-----CC-HHHHHHHHHHh--cCCCEEEEe--CCCCChhhHHH
Confidence 111 000 12 34457777764 899999999 88998765443
No 158
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=98.82 E-value=3.6e-11 Score=102.02 Aligned_cols=114 Identities=16% Similarity=0.158 Sum_probs=72.7
Q ss_pred CcEEEEEcCCCChHHHHHHHHhcCc---CCCccEEEE--------cCe--------------EEEEecCC------CCcc
Q psy1503 117 KQLACIIGAIGAGKTSLLHIILNEL---RISSGKVSL--------GGT--------------VSYASQEP------WIFA 165 (265)
Q Consensus 117 G~~~~ivG~~GsGKSTLl~~l~g~~---~~~~G~i~~--------~g~--------------i~~v~Q~~------~l~~ 165 (265)
+.+++|+||+||||||+.++|.+.+ .++.|.+.. +|. +++++|++ .+..
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~~~g~~~~d~g~i~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 84 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAEALQWHLLDSGAIYRVLALAALHHHVDVASEDALVPLASHLDVRFVSTNGNLEVILEG 84 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHHHHHHHTCCTTCHHHHHHHHHTCCEEEEEETTEEEEEETT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCcccCcceeehhhHHHHHcCCCccCHHHHHHHHHhCceeeeccCCCceEEECC
Confidence 5689999999999999999998776 677787755 331 55666654 2233
Q ss_pred ccHHHHHhcCCcccHHHHHHHHHHhcchhHHhcCCCCCcccc-CCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCCC
Q psy1503 166 ATIRQNILFGLPYLRRRYADVIRVCALQDDFDSLPNGDFTVV-GERGASLSGGQKARINLARAVYKNADIYLLDDPL 241 (265)
Q Consensus 166 ~ti~eni~~~~~~~~~~~~~~~~~~~l~~~i~~l~~g~~t~v-g~~g~~LSgGqrqRialARal~~~~~illLDEp~ 241 (265)
.++.+++. .+.+..++..+..++.+.....+..+.+ ..++.-++|+ .++++++.+++++|+.++.
T Consensus 85 ~~v~~~~~------~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~vldg~-----~~~~~~~~~~d~~i~l~~~ 150 (227)
T 1cke_A 85 EDVSGEIR------TQEVANAASQVAAFPRVREALLRRQRAFRELPGLIADGR-----DMGTVVFPDAPVKIFLDAS 150 (227)
T ss_dssp EECHHHHT------SHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCEEEEES-----SCCCCCCTTCSEEEEEECC
T ss_pred eeCchhhC------CHHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCCEEEECC-----CccceEecCCCEEEEEeCC
Confidence 45556542 2344555555665555543322222222 2345667776 4556677889999988875
No 159
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=98.81 E-value=2.2e-10 Score=106.35 Aligned_cols=116 Identities=12% Similarity=0.132 Sum_probs=75.7
Q ss_pred EEcCCcEEEEEcCCCChHHHHHHHHhc------------CcCCCccEEEEcC-----------------eEEEEecCCCC
Q psy1503 113 TFKPKQLACIIGAIGAGKTSLLHIILN------------ELRISSGKVSLGG-----------------TVSYASQEPWI 163 (265)
Q Consensus 113 ~i~~G~~~~ivG~~GsGKSTLl~~l~g------------~~~~~~G~i~~~g-----------------~i~~v~Q~~~l 163 (265)
.+++|..++|+|+||+|||||+++|.| ...|+.|.+.+.| ...++.+.|-+
T Consensus 16 ~v~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl 95 (392)
T 1ni3_A 16 RPGNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGL 95 (392)
T ss_dssp SSSSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGG
T ss_pred cccCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEecccc
Confidence 567899999999999999999999999 5679999999986 24577777776
Q ss_pred ccc-cHHHHHhcCCcccHHHHHHHHHHhc-chhHHhcCCCCCccccCCCCCCCCHHHHHHHHHHHHHccCC--CEEEEeC
Q psy1503 164 FAA-TIRQNILFGLPYLRRRYADVIRVCA-LQDDFDSLPNGDFTVVGERGASLSGGQKARINLARAVYKNA--DIYLLDD 239 (265)
Q Consensus 164 ~~~-ti~eni~~~~~~~~~~~~~~~~~~~-l~~~i~~l~~g~~t~vg~~g~~LSgGqrqRialARal~~~~--~illLDE 239 (265)
+.+ +..+++ .. .+...++.+. +...++... + .....+||+ .+| |+.++||
T Consensus 96 ~~~~s~~e~L------~~-~fl~~ir~~d~il~Vvd~~~---d----~~i~~v~~~------------~dP~~di~ilde 149 (392)
T 1ni3_A 96 TKGASTGVGL------GN-AFLSHVRAVDAIYQVVRAFD---D----AEIIHVEGD------------VDPIRDLSIIVD 149 (392)
T ss_dssp CCCCCSSSSS------CH-HHHHHHTTCSEEEEEEECCC---T----TCSSCCSSS------------SCHHHHHHHHHH
T ss_pred ccCCcHHHHH------HH-HHHHHHHHHHHHHHHHhccc---c----ceeeeeccc------------cCcchhhhhchh
Confidence 643 433322 01 1111222221 111122211 1 222335554 389 9999999
Q ss_pred CCCCcCHHHHHHHHH
Q psy1503 240 PLSAVDMHVGKHLFE 254 (265)
Q Consensus 240 p~s~LD~~~~~~i~~ 254 (265)
|++.+|+...+..++
T Consensus 150 el~~~D~~~~~k~~~ 164 (392)
T 1ni3_A 150 ELLIKDAEFVEKHLE 164 (392)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHH
Confidence 999999988766544
No 160
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=98.78 E-value=1.2e-09 Score=104.66 Aligned_cols=69 Identities=17% Similarity=0.157 Sum_probs=55.9
Q ss_pred cceeeceEEEcCCcEEEEEcCCCChHHHHHHHHhcCcCCCccEEEEcCe----------EEEEecCCCCcc-ccHHHHHh
Q psy1503 105 LTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSLGGT----------VSYASQEPWIFA-ATIRQNIL 173 (265)
Q Consensus 105 ~~l~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g~----------i~~v~Q~~~l~~-~ti~eni~ 173 (265)
.+++++++.+++|+.++|+||||||||||+++|+|+++|++|.|.+.|. +++..|...... .|..+++.
T Consensus 248 ~~l~~l~~~v~~g~~i~I~GptGSGKTTlL~aL~~~i~~~~giitied~~E~~~~~~~~v~~~~r~~~~~~~~~~~~~l~ 327 (511)
T 2oap_1 248 GVLAYLWLAIEHKFSAIVVGETASGKTTTLNAIMMFIPPDAKVVSIEDTREIKLYHENWIAEVTRTGMGEGEIDMYDLLR 327 (511)
T ss_dssp HHHHHHHHHHHTTCCEEEEESTTSSHHHHHHHHGGGSCTTCCEEEEESSCCCCCCCSSEEEEECBCCSSSCCBCHHHHHH
T ss_pred HHHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhCCCCCCEEEEcCcccccCCCCCeEEEEeecccccCCcCHHHHHH
Confidence 4578899999999999999999999999999999999999999998763 456666544111 36666654
No 161
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=98.75 E-value=1.9e-10 Score=99.22 Aligned_cols=54 Identities=15% Similarity=0.244 Sum_probs=41.5
Q ss_pred cEEEEeEEEEeCCCCCCcceeeceEEEcCCcEEEEEcCCCChHHHHHHHHhcCcCCCccEEEEcC
Q psy1503 88 HVSLDNVTAQWSLQNADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSLGG 152 (265)
Q Consensus 88 ~i~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g 152 (265)
.|+++|+...|+ . ++++.+ ++++|+||||||||||+++|+|++.|++|.|.++|
T Consensus 9 ~l~l~~~~~~~~---------~-~~~~~~-~~~~i~GpnGsGKSTll~~i~g~~~~~~G~i~~~g 62 (227)
T 1qhl_A 9 SLTLINWNGFFA---------R-TFDLDE-LVTTLSGGNGAGKSTTMAAFVTALIPDLTLLHFRN 62 (227)
T ss_dssp EEEEEEETTEEE---------E-EECHHH-HHHHHHSCCSHHHHHHHHHHHHHHSCCTTTC----
T ss_pred EEEEEeeecccC---------C-EEEEcC-cEEEEECCCCCCHHHHHHHHhcccccCCCeEEECC
Confidence 477787764441 1 466666 89999999999999999999999999999988765
No 162
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=98.70 E-value=1.4e-09 Score=95.15 Aligned_cols=53 Identities=19% Similarity=0.349 Sum_probs=35.7
Q ss_pred CcEEEEeE-EEEeCCCCCCcceeeceEEEcC---CcEEEEEcCCCChHHHHHHHHhcCc
Q psy1503 87 GHVSLDNV-TAQWSLQNADLTLNAVSITFKP---KQLACIIGAIGAGKTSLLHIILNEL 141 (265)
Q Consensus 87 ~~i~~~~~-~~~~~~~~~~~~l~~isl~i~~---G~~~~ivG~~GsGKSTLl~~l~g~~ 141 (265)
..++++|+ +|+|+. ..++|+|+||+|++ |+.++|+|++||||||+.++|++.+
T Consensus 16 ~~l~~~~~~~~~~~~--~~~~l~~~~~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~~l 72 (250)
T 3nwj_A 16 ALLETGSLLHSPFDE--EQQILKKKAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMARSL 72 (250)
T ss_dssp ------------------CHHHHHHHHTTHHHHTTCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CceEEcceeeEEecC--cchhhhhhhhhhhhhcCCCEEEEECCCCCCHHHHHHHHHHhc
Confidence 36899999 999932 35799999999999 9999999999999999999998855
No 163
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=98.70 E-value=1e-08 Score=85.05 Aligned_cols=37 Identities=19% Similarity=0.301 Sum_probs=31.3
Q ss_pred HHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHHHHHHH
Q psy1503 222 INLARAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGC 260 (265)
Q Consensus 222 ialARal~~~~~illLDEp~s~LD~~~~~~i~~~~i~~~ 260 (265)
...||+++.+|++.++| +|++|......+++.+...+
T Consensus 130 ~~~a~~l~~~~~~~~~d--~Sal~~~~i~~l~~~l~~~~ 166 (199)
T 2f9l_A 130 TDEARAFAEKNNLSFIE--TSALDSTNVEEAFKNILTEI 166 (199)
T ss_dssp HHHHHHHHHHTTCEEEE--CCTTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCeEEE--EeCCCCCCHHHHHHHHHHHH
Confidence 45689999999999999 99999999999888766443
No 164
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=98.67 E-value=7e-10 Score=96.64 Aligned_cols=59 Identities=17% Similarity=0.151 Sum_probs=47.8
Q ss_pred cCCcEEEEEcCCCChHHHHHHHHh---cCcCCCccEEE--------EcC--------------eEEEEecC------CCC
Q psy1503 115 KPKQLACIIGAIGAGKTSLLHIIL---NELRISSGKVS--------LGG--------------TVSYASQE------PWI 163 (265)
Q Consensus 115 ~~G~~~~ivG~~GsGKSTLl~~l~---g~~~~~~G~i~--------~~g--------------~i~~v~Q~------~~l 163 (265)
++|++++|+||+||||||++++|+ |+..+++|.+. .+| .+++++|. .++
T Consensus 25 ~~g~~I~I~G~~GsGKSTl~k~La~~Lg~~~~d~g~i~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 104 (252)
T 4e22_A 25 AIAPVITVDGPSGAGKGTLCKALAESLNWRLLDSGAIYRVLALAALHHQVDISTEEALVPLAAHLDVRFVSQNGQLQVIL 104 (252)
T ss_dssp TTSCEEEEECCTTSSHHHHHHHHHHHTTCEEEEHHHHHHHHHHHHHHTTCCSSSSTTHHHHHHTCCEEEEEETTEEEEEE
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHhcCCCcCCCCceehHhHHHHHHcCCCcccHHHHHHHHHcCCEEEecCCCCceEEE
Confidence 789999999999999999999999 99999999987 444 16777754 334
Q ss_pred ccccHHHHHh
Q psy1503 164 FAATIRQNIL 173 (265)
Q Consensus 164 ~~~ti~eni~ 173 (265)
+..++.+|+.
T Consensus 105 ~~~~v~~~i~ 114 (252)
T 4e22_A 105 EGEDVSNEIR 114 (252)
T ss_dssp TTEECTTGGG
T ss_pred CCeehhHHHH
Confidence 4567777764
No 165
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=98.64 E-value=1.2e-08 Score=85.27 Aligned_cols=44 Identities=23% Similarity=0.256 Sum_probs=24.7
Q ss_pred eCCCCCCcceeeceEEEcCCcEEEEEcCCCChHHHHHHHHhcCc
Q psy1503 98 WSLQNADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNEL 141 (265)
Q Consensus 98 ~~~~~~~~~l~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~g~~ 141 (265)
|+.....++++|+||++++|++++|+|++||||||+.+.|++.+
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 6 HHSSGVDLGTENLYFQSNAMVRIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp ------------------CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCceeEecCCCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 44344567899999999999999999999999999999998765
No 166
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=98.63 E-value=3.6e-09 Score=87.40 Aligned_cols=54 Identities=22% Similarity=0.183 Sum_probs=40.6
Q ss_pred CcEEEEEcCCCChHHHHHHHHhcCcCCCccEEEEcCe-------EEEEecCCCCc-cccHHHHHh
Q psy1503 117 KQLACIIGAIGAGKTSLLHIILNELRISSGKVSLGGT-------VSYASQEPWIF-AATIRQNIL 173 (265)
Q Consensus 117 G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g~-------i~~v~Q~~~l~-~~ti~eni~ 173 (265)
|++++|+||||||||||+++|++ |.+|.+.++|. +++++|....+ ..++++|+.
T Consensus 2 g~ii~l~G~~GaGKSTl~~~L~~---~~~g~~~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 63 (189)
T 2bdt_A 2 KKLYIITGPAGVGKSTTCKRLAA---QLDNSAYIEGDIINHMVVGGYRPPWESDELLALTWKNIT 63 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH---HSSSEEEEEHHHHHTTCCTTCCCGGGCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHhc---ccCCeEEEcccchhhhhccccccCccchhHHHHHHHHHH
Confidence 67899999999999999999987 67898988762 45566654322 236666654
No 167
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=98.61 E-value=3.1e-08 Score=91.03 Aligned_cols=134 Identities=13% Similarity=0.118 Sum_probs=73.2
Q ss_pred EEEEEcCCCChHHHHHHHHhcCcC-----------CCccEEEEcCeEEEEecCCCC-----------ccccHHHHHhcCC
Q psy1503 119 LACIIGAIGAGKTSLLHIILNELR-----------ISSGKVSLGGTVSYASQEPWI-----------FAATIRQNILFGL 176 (265)
Q Consensus 119 ~~~ivG~~GsGKSTLl~~l~g~~~-----------~~~G~i~~~g~i~~v~Q~~~l-----------~~~ti~eni~~~~ 176 (265)
.++|+|++|||||||++.|.|... |+.|.+.++|.--.+.+.+-+ |..| .+.+.-..
T Consensus 181 ~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g~~v~l~DT~G~i~~lp~~lve~f~~t-l~~~~~aD 259 (364)
T 2qtf_A 181 SIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINNRKIMLVDTVGFIRGIPPQIVDAFFVT-LSEAKYSD 259 (364)
T ss_dssp EEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETTEEEEEEECCCBCSSCCGGGHHHHHHH-HHGGGGSS
T ss_pred EEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECCEEEEEEeCCCchhcCCHHHHHHHHHH-HHHHHhCC
Confidence 499999999999999999999875 677899998852222222221 1111 22221110
Q ss_pred ------cccH-H-HHHHHHHH-hcchhHHhcCCCCCccccCCCCCCCCHHHHHHHHHH----HHH-ccCCCEEEEeCCCC
Q psy1503 177 ------PYLR-R-RYADVIRV-CALQDDFDSLPNGDFTVVGERGASLSGGQKARINLA----RAV-YKNADIYLLDDPLS 242 (265)
Q Consensus 177 ------~~~~-~-~~~~~~~~-~~l~~~i~~l~~g~~t~vg~~g~~LSgGqrqRialA----Ral-~~~~~illLDEp~s 242 (265)
.... . ...+..+. ..+...+.. ..--.-.|+.+...+|++++||+.++ +++ ..+|++ +|+|
T Consensus 260 ~il~VvD~s~~~~~~~~~~~~~~~~L~~l~~-~~~p~ilV~NK~Dl~~~~~~~~~~~~~~l~~~l~~~~~~~----~~~S 334 (364)
T 2qtf_A 260 ALILVIDSTFSENLLIETLQSSFEILREIGV-SGKPILVTLNKIDKINGDLYKKLDLVEKLSKELYSPIFDV----IPIS 334 (364)
T ss_dssp EEEEEEETTSCHHHHHHHHHHHHHHHHHHTC-CSCCEEEEEECGGGCCSCHHHHHHHHHHHHHHHCSCEEEE----EECB
T ss_pred EEEEEEECCCCcchHHHHHHHHHHHHHHhCc-CCCCEEEEEECCCCCCchHHHHHHHHHHHHHHhcCCCCcE----EEEE
Confidence 1011 1 01111110 111111110 11111233455556788888988877 666 444454 7999
Q ss_pred CcCHHHHHHHHHHHHH
Q psy1503 243 AVDMHVGKHLFEDCIS 258 (265)
Q Consensus 243 ~LD~~~~~~i~~~~i~ 258 (265)
++|......+++.+..
T Consensus 335 A~~g~gi~~L~~~I~~ 350 (364)
T 2qtf_A 335 ALKRTNLELLRDKIYQ 350 (364)
T ss_dssp TTTTBSHHHHHHHHHH
T ss_pred CCCCcCHHHHHHHHHH
Confidence 9999888888775543
No 168
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=98.59 E-value=4.5e-08 Score=80.08 Aligned_cols=38 Identities=34% Similarity=0.428 Sum_probs=34.4
Q ss_pred eeceEEEcCCcEEEEEcCCCChHHHHHHHHhcCcCCCcc
Q psy1503 108 NAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSG 146 (265)
Q Consensus 108 ~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G 146 (265)
+++++++.+| +++|+||||||||||+++|.+.+.+..|
T Consensus 18 ~~~~~~~~~g-~~~i~G~NGsGKStll~ai~~~l~~~~~ 55 (182)
T 3kta_A 18 KKVVIPFSKG-FTAIVGANGSGKSNIGDAILFVLGGLSA 55 (182)
T ss_dssp SCEEEECCSS-EEEEEECTTSSHHHHHHHHHHHTTCCCT
T ss_pred ccEEEecCCC-cEEEECCCCCCHHHHHHHHHHHHcCCcc
Confidence 6789999999 9999999999999999999998777655
No 169
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=98.56 E-value=3.2e-08 Score=82.28 Aligned_cols=35 Identities=20% Similarity=0.259 Sum_probs=29.8
Q ss_pred EEEcCCcEEEEEcCCCChHHHHHHHHhcCcCCCcc
Q psy1503 112 ITFKPKQLACIIGAIGAGKTSLLHIILNELRISSG 146 (265)
Q Consensus 112 l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G 146 (265)
+++++|++++|+|||||||||++++|.+.+.|+.|
T Consensus 1 m~i~~g~~i~l~G~~GsGKSTl~~~L~~~~~~~~~ 35 (207)
T 2j41_A 1 MDNEKGLLIVLSGPSGVGKGTVRKRIFEDPSTSYK 35 (207)
T ss_dssp ---CCCCEEEEECSTTSCHHHHHHHHHHCTTCCEE
T ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHHHhhCCCeE
Confidence 46889999999999999999999999999977655
No 170
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=98.54 E-value=6.3e-09 Score=87.04 Aligned_cols=48 Identities=21% Similarity=0.275 Sum_probs=41.6
Q ss_pred CcceeeceEEEcCCcEEEEEcCCCChHHHHHHHHhcCcCCCccEE--EEcC
Q psy1503 104 DLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKV--SLGG 152 (265)
Q Consensus 104 ~~~l~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i--~~~g 152 (265)
....+..++..++|++++|+|||||||||++++|++.+. ..|.+ .++|
T Consensus 12 ~~~~~~~~~~~~~g~~i~l~G~sGsGKSTl~~~La~~l~-~~G~~~~~~d~ 61 (200)
T 3uie_A 12 VEKVDRQRLLDQKGCVIWVTGLSGSGKSTLACALNQMLY-QKGKLCYILDG 61 (200)
T ss_dssp CCHHHHHHHHTSCCEEEEEECSTTSSHHHHHHHHHHHHH-HTTCCEEEEEH
T ss_pred cCHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHHH-hcCceEEEecC
Confidence 346678888899999999999999999999999999987 67877 6654
No 171
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=98.50 E-value=3.9e-09 Score=95.51 Aligned_cols=125 Identities=16% Similarity=0.175 Sum_probs=73.8
Q ss_pred CcceeeceEEEcCCc------EEEEEcCCCChHHHHHHHHhcCcCC--CccEEEEcCeEEEEecCCCCccccHHHHHh--
Q psy1503 104 DLTLNAVSITFKPKQ------LACIIGAIGAGKTSLLHIILNELRI--SSGKVSLGGTVSYASQEPWIFAATIRQNIL-- 173 (265)
Q Consensus 104 ~~~l~~isl~i~~G~------~~~ivG~~GsGKSTLl~~l~g~~~~--~~G~i~~~g~i~~v~Q~~~l~~~ti~eni~-- 173 (265)
...|++++..+.+++ +++|+||||||||||+++|.+++.+ ++| .+++++++.+..+....+...
T Consensus 73 ~~~l~~~~~~~l~~~~~~~p~iigI~GpsGSGKSTl~~~L~~ll~~~~~~~------~v~~i~~D~f~~~~~~l~~~~~~ 146 (321)
T 3tqc_A 73 RQTLQQATYQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKALLSRWPDHP------NVEVITTDGFLYSNAKLEKQGLM 146 (321)
T ss_dssp HHHHHHHHHHHHTCCCCCCCEEEEEECCTTSSHHHHHHHHHHHHTTSTTCC------CEEEEEGGGGBCCHHHHHHTTCG
T ss_pred hHHHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHhcccCCCC------eEEEEeecccccchhhhhhHHHH
Confidence 346788888887776 9999999999999999999999874 443 467888888766544333311
Q ss_pred --cCCc--ccHHHHHHHHHHhcchhHHhcCCCCCccccCCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCcCH
Q psy1503 174 --FGLP--YLRRRYADVIRVCALQDDFDSLPNGDFTVVGERGASLSGGQKARINLARAVYKNADIYLLDDPLSAVDM 246 (265)
Q Consensus 174 --~~~~--~~~~~~~~~~~~~~l~~~i~~l~~g~~t~vg~~g~~LSgGqrqRialARal~~~~~illLDEp~s~LD~ 246 (265)
+|.+ ++.+.+.+.++.. ..|..+ +. .-.+|-+..+|+.-+......|+|+|++-+..-.|.
T Consensus 147 ~~~g~P~~~D~~~l~~~L~~L---------~~g~~~-v~--~P~yd~~~~~r~~~~~~~v~~~dIVIvEGi~lL~~~ 211 (321)
T 3tqc_A 147 KRKGFPESYDMPSLLRVLNAI---------KSGQRN-VR--IPVYSHHYYDIVRGQYEIVDQPDIVILEGLNILQTG 211 (321)
T ss_dssp GGTTSGGGBCHHHHHHHHHHH---------HTTCSS-EE--EEEEETTTTEEEEEEEEEECSCSEEEEECTTTTCCC
T ss_pred hhccCcccccHHHHHHHHHhh---------hccccc-cc--cchhhhhccccccCceeeccCCCEEEEEcccccccc
Confidence 2332 2333333333221 112100 00 001222222333222334568999999988776654
No 172
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=98.44 E-value=6e-08 Score=79.81 Aligned_cols=34 Identities=12% Similarity=0.263 Sum_probs=28.8
Q ss_pred cCCcEEEEEcCCCChHHHHHHHHhcCcCC-CccEE
Q psy1503 115 KPKQLACIIGAIGAGKTSLLHIILNELRI-SSGKV 148 (265)
Q Consensus 115 ~~G~~~~ivG~~GsGKSTLl~~l~g~~~~-~~G~i 148 (265)
.+|++++|+||||||||||+++|++.+++ ..|.|
T Consensus 3 ~~g~~i~i~GpsGsGKSTL~~~L~~~~~~~~~~~i 37 (180)
T 1kgd_A 3 HMRKTLVLLGAHGVGRRHIKNTLITKHPDRFAYPI 37 (180)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHHCTTTEECCC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCCccEEEee
Confidence 36899999999999999999999998863 44444
No 173
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=98.41 E-value=9.4e-08 Score=79.80 Aligned_cols=59 Identities=17% Similarity=0.214 Sum_probs=42.1
Q ss_pred eEEEcCCcEEEEEcCCCChHHHHHHHHhcCcCCCccEEEEcCe------------EEEEecCCCCcc-ccHHHHHh
Q psy1503 111 SITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSLGGT------------VSYASQEPWIFA-ATIRQNIL 173 (265)
Q Consensus 111 sl~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g~------------i~~v~Q~~~l~~-~ti~eni~ 173 (265)
.++.++|++++|+||||||||||+++|.+.+ |.+.+++. +++++|++..+. .++.+|+.
T Consensus 23 ~m~~~~g~~i~l~G~~GsGKSTl~~~L~~~~----g~~~i~~d~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 94 (200)
T 4eun_A 23 MMTGEPTRHVVVMGVSGSGKTTIAHGVADET----GLEFAEADAFHSPENIATMQRGIPLTDEDRWPWLRSLAEWM 94 (200)
T ss_dssp -----CCCEEEEECCTTSCHHHHHHHHHHHH----CCEEEEGGGGSCHHHHHHHHTTCCCCHHHHHHHHHHHHHHH
T ss_pred hhcCCCCcEEEEECCCCCCHHHHHHHHHHhh----CCeEEcccccccHHHHHHHhcCCCCCCcccccHHHHHHHHH
Confidence 3567899999999999999999999999977 78888762 466777655443 35566654
No 174
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=98.36 E-value=2.6e-07 Score=77.20 Aligned_cols=45 Identities=22% Similarity=0.209 Sum_probs=39.5
Q ss_pred EEEcCCcEEEEEcCCCChHHHHHHHHhcCcCCCccEEEEcCeEEEEecCCCCccc
Q psy1503 112 ITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSLGGTVSYASQEPWIFAA 166 (265)
Q Consensus 112 l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g~i~~v~Q~~~l~~~ 166 (265)
=++++|.+++|+|++||||||+++.|.+.++ .+.+++|++.++++
T Consensus 16 ~~~~~~~~i~i~G~~GsGKSTl~~~L~~~~~----------~~~~i~~D~~~~~~ 60 (207)
T 2qt1_A 16 PRGSKTFIIGISGVTNSGKTTLAKNLQKHLP----------NCSVISQDDFFKPE 60 (207)
T ss_dssp CCSCCCEEEEEEESTTSSHHHHHHHHHTTST----------TEEEEEGGGGBCCG
T ss_pred ccCCCCeEEEEECCCCCCHHHHHHHHHHhcC----------CcEEEeCCccccCH
Confidence 3678899999999999999999999999874 27899999988865
No 175
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=98.29 E-value=2.8e-07 Score=77.63 Aligned_cols=63 Identities=19% Similarity=0.377 Sum_probs=43.0
Q ss_pred eEEEcCCcEEEEEcCCCChHHHHHHHHhcCcC-------------CCccEEEEcCe-EE---------EEecCCCCcccc
Q psy1503 111 SITFKPKQLACIIGAIGAGKTSLLHIILNELR-------------ISSGKVSLGGT-VS---------YASQEPWIFAAT 167 (265)
Q Consensus 111 sl~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~-------------~~~G~i~~~g~-i~---------~v~Q~~~l~~~t 167 (265)
|+...+|++++|+||||||||||++.|++.++ |..|+ ++|. .- .+.|+.+++.++
T Consensus 13 ~~~~~~g~~ivl~GPSGaGKsTL~~~L~~~~~~~~~~~vs~TTR~p~~gE--~~G~~y~fvs~~~f~~~i~~~~fle~~~ 90 (197)
T 3ney_A 13 NLYFQGRKTLVLIGASGVGRSHIKNALLSQNPEKFVYPVPYTTRPPRKSE--EDGKEYHFISTEEMTRNISANEFLEFGS 90 (197)
T ss_dssp ---CCSCCEEEEECCTTSSHHHHHHHHHHHCTTTEECCCCEECSCCCTTC--CTTSSCEECCHHHHHHHHHTTCEEEEEE
T ss_pred cCCCCCCCEEEEECcCCCCHHHHHHHHHhhCCccEEeeecccccCCcCCe--eccccceeccHHHhhhhhhhhhhhhhhh
Confidence 45556899999999999999999999999876 56666 3552 11 123455566667
Q ss_pred HHHHHhcCC
Q psy1503 168 IRQNILFGL 176 (265)
Q Consensus 168 i~eni~~~~ 176 (265)
+.+| .||.
T Consensus 91 ~~~n-~YGt 98 (197)
T 3ney_A 91 YQGN-MFGT 98 (197)
T ss_dssp ETTE-EEEE
T ss_pred hhce-eccc
Confidence 6666 3553
No 176
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=98.27 E-value=3.4e-07 Score=83.28 Aligned_cols=107 Identities=16% Similarity=0.188 Sum_probs=69.9
Q ss_pred cceeeceEEEcCCcEEEEEcCCCChHHHHHHHHhcCcCCCccEEEEcCeEEEEecCCCCccccHHHHHhcCCcccHHHHH
Q psy1503 105 LTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSLGGTVSYASQEPWIFAATIRQNILFGLPYLRRRYA 184 (265)
Q Consensus 105 ~~l~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g~i~~v~Q~~~l~~~ti~eni~~~~~~~~~~~~ 184 (265)
+.|+.+.--+++|+++.|.|++|+|||||+.-++.......+ .+.|++=+ .+..+ -..
T Consensus 34 ~~LD~~~gGl~~G~LiiIaG~pG~GKTt~al~ia~~~a~~g~------~Vl~fSlE-----ms~~q-----------l~~ 91 (338)
T 4a1f_A 34 VQLDNYTSGFNKGSLVIIGARPSMGKTSLMMNMVLSALNDDR------GVAVFSLE-----MSAEQ-----------LAL 91 (338)
T ss_dssp HHHHHHHCSBCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTC------EEEEEESS-----SCHHH-----------HHH
T ss_pred hHHHHHhcCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCC------eEEEEeCC-----CCHHH-----------HHH
Confidence 347776667999999999999999999999888765443222 34554422 12111 111
Q ss_pred HHHH-HhcchhHHhcCCCCCccccCCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCcC
Q psy1503 185 DVIR-VCALQDDFDSLPNGDFTVVGERGASLSGGQKARINLARAVYKNADIYLLDDPLSAVD 245 (265)
Q Consensus 185 ~~~~-~~~l~~~i~~l~~g~~t~vg~~g~~LSgGqrqRialARal~~~~~illLDEp~s~LD 245 (265)
+.+. ..++. +..+. . ..||.++++|++.|...+.+++++|.|+|...+|
T Consensus 92 Rlls~~~~v~--~~~l~---------~-g~Ls~~e~~~l~~a~~~l~~~~l~I~d~~~~si~ 141 (338)
T 4a1f_A 92 RALSDLTSIN--MHDLE---------S-GRLDDDQWENLAKCFDHLSQKKLFFYDKSYVRIE 141 (338)
T ss_dssp HHHHHHHCCC--HHHHH---------H-TCCCHHHHHHHHHHHHHHHHSCEEEECCTTCCHH
T ss_pred HHHHHhhCCC--HHHHh---------c-CCCCHHHHHHHHHHHHHHhcCCeEEeCCCCCcHH
Confidence 1111 11211 11110 0 2699999999999999999999999999976655
No 177
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=98.27 E-value=8.5e-07 Score=80.79 Aligned_cols=45 Identities=24% Similarity=0.293 Sum_probs=34.5
Q ss_pred cceeeceEEEcCCcEEEEEcCCCChHHHHHHHHhc--CcCCCccEEEEcC
Q psy1503 105 LTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILN--ELRISSGKVSLGG 152 (265)
Q Consensus 105 ~~l~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~g--~~~~~~G~i~~~g 152 (265)
.+|++++++++ .++|+|++|||||||++.|.| ++++..|.++...
T Consensus 25 ~~l~~i~~~lp---~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~vT~~p 71 (360)
T 3t34_A 25 SALPTLWDSLP---AIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRP 71 (360)
T ss_dssp CCC----CCCC---EEEEECBTTSSHHHHHHHHHTSCCSCCCSSSCCCSC
T ss_pred cccccccccCC---EEEEECCCCCcHHHHHHHHhCCCcCCCCCCcccCcc
Confidence 47899999998 999999999999999999999 6677777665433
No 178
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=98.26 E-value=2.1e-07 Score=77.80 Aligned_cols=38 Identities=24% Similarity=0.214 Sum_probs=33.7
Q ss_pred EEcCCcEEEEEcCCCChHHHHHHHHhcCcCCCccEEEE
Q psy1503 113 TFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSL 150 (265)
Q Consensus 113 ~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~ 150 (265)
..++|++++|+|++||||||+++.|.+.+++..|.|.+
T Consensus 18 ~~~~~~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~ 55 (201)
T 1rz3_A 18 KTAGRLVLGIDGLSRSGKTTLANQLSQTLREQGISVCV 55 (201)
T ss_dssp CCSSSEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEE
T ss_pred ccCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEE
Confidence 46789999999999999999999999999888777654
No 179
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=98.25 E-value=6.2e-07 Score=81.87 Aligned_cols=94 Identities=19% Similarity=0.301 Sum_probs=57.9
Q ss_pred EEcCCcEEEEEcCCCChHHHHHHHHhcCcCCCccEEEEcCeEEEEecCCCCccccHHHHHhcCCcccHHHHHHHHHHhcc
Q psy1503 113 TFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSLGGTVSYASQEPWIFAATIRQNILFGLPYLRRRYADVIRVCAL 192 (265)
Q Consensus 113 ~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g~i~~v~Q~~~l~~~ti~eni~~~~~~~~~~~~~~~~~~~l 192 (265)
-+++|+++.|.||+|||||||+..++....... +.+.|+.-+...-+ . + .+..+.
T Consensus 57 Gl~~G~iv~I~G~pGsGKTtLal~la~~~~~~g------~~vlyi~~E~~~~~-~---------------~---a~~lG~ 111 (349)
T 2zr9_A 57 GLPRGRVIEIYGPESSGKTTVALHAVANAQAAG------GIAAFIDAEHALDP-E---------------Y---AKKLGV 111 (349)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHTT------CCEEEEESSCCCCH-H---------------H---HHHTTC
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHhCC------CeEEEEECCCCcCH-H---------------H---HHHcCC
Confidence 588999999999999999999888876554433 34556665432110 0 0 111221
Q ss_pred hhHHhcCCCCCccccCCCCCCCCHHHHHHHHHHHHHccC--CCEEEEeCCCCCc
Q psy1503 193 QDDFDSLPNGDFTVVGERGASLSGGQKARINLARAVYKN--ADIYLLDDPLSAV 244 (265)
Q Consensus 193 ~~~i~~l~~g~~t~vg~~g~~LSgGqrqRialARal~~~--~~illLDEp~s~L 244 (265)
. .+.+. +-. ..+. .|-+.++++++.+ |+++|+|++++-+
T Consensus 112 ~--~~~l~------i~~---~~~~--e~~l~~~~~l~~~~~~~lIVIDsl~~l~ 152 (349)
T 2zr9_A 112 D--TDSLL------VSQ---PDTG--EQALEIADMLVRSGALDIIVIDSVAALV 152 (349)
T ss_dssp C--GGGCE------EEC---CSSH--HHHHHHHHHHHTTTCCSEEEEECGGGCC
T ss_pred C--HHHeE------Eec---CCCH--HHHHHHHHHHHhcCCCCEEEEcChHhhc
Confidence 1 11110 101 1122 3456788888755 9999999999988
No 180
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=98.25 E-value=5.3e-07 Score=75.85 Aligned_cols=29 Identities=17% Similarity=0.336 Sum_probs=27.5
Q ss_pred cCCcEEEEEcCCCChHHHHHHHHhcCcCC
Q psy1503 115 KPKQLACIIGAIGAGKTSLLHIILNELRI 143 (265)
Q Consensus 115 ~~G~~~~ivG~~GsGKSTLl~~l~g~~~~ 143 (265)
++|++++|+||||||||||++.|++.+++
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~~~ 34 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKDPET 34 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHSTTC
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhCCC
Confidence 68999999999999999999999999876
No 181
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=98.25 E-value=1.7e-07 Score=93.97 Aligned_cols=125 Identities=14% Similarity=0.152 Sum_probs=72.5
Q ss_pred EEcCCcEEEEEcCCCChHHHHHHHHhcCcCCCccEEEEcCe-EEEEecCCCCccccHHHHHhcCCcccHHHHHHHHHHhc
Q psy1503 113 TFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSLGGT-VSYASQEPWIFAATIRQNILFGLPYLRRRYADVIRVCA 191 (265)
Q Consensus 113 ~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g~-i~~v~Q~~~l~~~ti~eni~~~~~~~~~~~~~~~~~~~ 191 (265)
.+..|+.+.|+||+||||||++.+++....+..| .|. +.++ + |. ..+... ....+.+..+
T Consensus 105 ~l~~~~~vii~gpTGSGKTtllp~ll~~~~~~~~----~g~~ilvl-~-P~---r~La~q----------~~~~l~~~~~ 165 (773)
T 2xau_A 105 LYQNNQIMVFVGETGSGKTTQIPQFVLFDEMPHL----ENTQVACT-Q-PR---RVAAMS----------VAQRVAEEMD 165 (773)
T ss_dssp HHHHCSEEEEECCTTSSHHHHHHHHHHHHHCGGG----GTCEEEEE-E-SC---HHHHHH----------HHHHHHHHTT
T ss_pred HHhCCCeEEEECCCCCCHHHHHHHHHHHhccccC----CCceEEec-C-ch---HHHHHH----------HHHHHHHHhC
Confidence 3567899999999999999999888776555442 121 2222 1 10 000000 0011111111
Q ss_pred c--hhHHh-cCCCCCccccCCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCC-CcCHHHHHHHHHHH
Q psy1503 192 L--QDDFD-SLPNGDFTVVGERGASLSGGQKARINLARAVYKNADIYLLDDPLS-AVDMHVGKHLFEDC 256 (265)
Q Consensus 192 l--~~~i~-~l~~g~~t~vg~~g~~LSgGqrqRialARal~~~~~illLDEp~s-~LD~~~~~~i~~~~ 256 (265)
. ...+. .......+.-+.+..-+|+|+.+|..++++++.+++++|+|||.. ++|......++...
T Consensus 166 ~~v~~~vG~~i~~~~~~~~~~~I~v~T~G~l~r~l~~~~~l~~~~~lIlDEah~R~ld~d~~~~~l~~l 234 (773)
T 2xau_A 166 VKLGEEVGYSIRFENKTSNKTILKYMTDGMLLREAMEDHDLSRYSCIILDEAHERTLATDILMGLLKQV 234 (773)
T ss_dssp CCBTTTEEEEETTEEECCTTCSEEEEEHHHHHHHHHHSTTCTTEEEEEECSGGGCCHHHHHHHHHHHHH
T ss_pred CchhheecceeccccccCCCCCEEEECHHHHHHHHhhCccccCCCEEEecCccccccchHHHHHHHHHH
Confidence 1 00000 000000001123345689999999999999999999999999996 89977665555544
No 182
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=98.24 E-value=3.7e-07 Score=78.02 Aligned_cols=39 Identities=23% Similarity=0.168 Sum_probs=32.9
Q ss_pred ceEEEcCCcEEEEEcCCCChHHHHHHHHhcCcCCCccEEEEcC
Q psy1503 110 VSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSLGG 152 (265)
Q Consensus 110 isl~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g 152 (265)
-+.+.++|++++|.|++||||||++++|.+. .|+|.+.+
T Consensus 13 ~~~~~~~g~~i~i~G~~GsGKSTl~~~L~~~----~g~v~~~~ 51 (230)
T 2vp4_A 13 KYAEGTQPFTVLIEGNIGSGKTTYLNHFEKY----KNDICLLT 51 (230)
T ss_dssp CBTTTCCCEEEEEECSTTSCHHHHHHTTGGG----TTTEEEEC
T ss_pred ccCCCCCceEEEEECCCCCCHHHHHHHHHhc----cCCeEEEe
Confidence 3456689999999999999999999999997 67776654
No 183
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=98.20 E-value=2.8e-07 Score=85.11 Aligned_cols=128 Identities=16% Similarity=0.116 Sum_probs=79.1
Q ss_pred cceeeceEEEcCCcEEEEEcCCCChHHHHHHHHhcCcCCCccEEEE-c----C---eEEEEecCCCCccccHHHHHhcCC
Q psy1503 105 LTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSL-G----G---TVSYASQEPWIFAATIRQNILFGL 176 (265)
Q Consensus 105 ~~l~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~-~----g---~i~~v~Q~~~l~~~ti~eni~~~~ 176 (265)
.+++++++.+++|++++|+||+|||||||+++|+|. .+|.+.. . + .+++++|...++ .|++.+..
T Consensus 157 ~~l~~~~~~i~~~~~i~l~G~~GsGKSTl~~~l~~~---~~g~~~~~~~~~~~~~~~lg~~~q~~~~l----~dd~~~~~ 229 (377)
T 1svm_A 157 DFLKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLEL---CGGKALNVNLPLDRLNFELGVAIDQFLVV----FEDVKGTG 229 (377)
T ss_dssp HHHHHHHHCCTTCCEEEEECSTTSSHHHHHHHHHHH---HCCEEECCSSCTTTHHHHHGGGTTCSCEE----ETTCCCST
T ss_pred HHHHhcccccCCCCEEEEECCCCCCHHHHHHHHHhh---cCCcEEEEeccchhHHHHHHHhcchhHHH----HHHHHHHH
Confidence 578999999999999999999999999999999985 4677655 2 1 255555554321 12222111
Q ss_pred c----c---cH----HHHHHHHH---Hhcchh----HHh-cCCCCCccccCCCCCCCCHHHHHHHHHHHHHccCCCEEE-
Q psy1503 177 P----Y---LR----RRYADVIR---VCALQD----DFD-SLPNGDFTVVGERGASLSGGQKARINLARAVYKNADIYL- 236 (265)
Q Consensus 177 ~----~---~~----~~~~~~~~---~~~l~~----~i~-~l~~g~~t~vg~~g~~LSgGqrqRialARal~~~~~ill- 236 (265)
. . .. ..+.+.+. ...+.. .+. .++.+ .+..+...+++|.+||++.+.+++.+|++++
T Consensus 230 ~~~r~l~~~~~~~~~~~l~~~ldG~v~v~~~tn~~~~l~alf~pg---~ld~~~~~l~~~~~~rl~~~~~l~~~pDLliy 306 (377)
T 1svm_A 230 GESRDLPSGQGINNLDNLRDYLDGSVKVNLEKKHLNKRTQIFPPG---IVTMNEYSVPKTLQARFVKQIDFRPKDYLKHC 306 (377)
T ss_dssp TTTTTCCCCSHHHHHHTTHHHHHCSSCEEECCSSSCCEEECCCCE---EEEECSCCCCHHHHTTEEEEEECCCCHHHHHH
T ss_pred HHHhhccccCcchHHHHHHHHhcCCCeEeeccCchhhHHHhhcCc---ccChhHHhhcHHHHHHHhhhhccCCCCCeEEE
Confidence 1 0 00 01111111 000000 000 11111 2334556789999999999888899999988
Q ss_pred EeCCCC
Q psy1503 237 LDDPLS 242 (265)
Q Consensus 237 LDEp~s 242 (265)
||+|+.
T Consensus 307 Ld~~~~ 312 (377)
T 1svm_A 307 LERSEF 312 (377)
T ss_dssp HHTCTH
T ss_pred EeCCHH
Confidence 999886
No 184
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=98.20 E-value=4.9e-06 Score=70.53 Aligned_cols=38 Identities=18% Similarity=0.300 Sum_probs=29.8
Q ss_pred cceeec-eEEEcCCcEEEEEcCCCChHHHHHHHH-hcCcC
Q psy1503 105 LTLNAV-SITFKPKQLACIIGAIGAGKTSLLHII-LNELR 142 (265)
Q Consensus 105 ~~l~~i-sl~i~~G~~~~ivG~~GsGKSTLl~~l-~g~~~ 142 (265)
+.|+.+ .--+++|+++.|+||+|||||||+..+ .+..+
T Consensus 10 ~~LD~~l~gGl~~G~~~~i~G~~GsGKTtl~~~~~~~~~~ 49 (247)
T 2dr3_A 10 PGVDEILHGGIPERNVVLLSGGPGTGKTIFSQQFLWNGLK 49 (247)
T ss_dssp TTHHHHTTTSEETTCEEEEEECTTSSHHHHHHHHHHHHHH
T ss_pred hhHHHHcCCCCCCCcEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 356666 667999999999999999999996555 44443
No 185
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=98.19 E-value=3.5e-07 Score=82.56 Aligned_cols=44 Identities=20% Similarity=0.193 Sum_probs=40.0
Q ss_pred eeeceEEEcCCcEEEEEcCCCChHHHHHHHHhcCcCCCccEEEE
Q psy1503 107 LNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSL 150 (265)
Q Consensus 107 l~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~ 150 (265)
+++++|++++|++++|+|++|+||||++..|++.+.+..|+|.+
T Consensus 95 ~~~l~~~~~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVll 138 (320)
T 1zu4_A 95 KYRIDFKENRLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLI 138 (320)
T ss_dssp -CCCCCCTTSCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEE
T ss_pred ccCccccCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEE
Confidence 36889999999999999999999999999999999998888865
No 186
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=98.17 E-value=2.9e-07 Score=85.10 Aligned_cols=54 Identities=22% Similarity=0.293 Sum_probs=48.3
Q ss_pred CcEEEEeEEEEeCCCCCCccee--------------eceEEEcCCcEEEEEcCCCChHHHHHHHHhcCcC
Q psy1503 87 GHVSLDNVTAQWSLQNADLTLN--------------AVSITFKPKQLACIIGAIGAGKTSLLHIILNELR 142 (265)
Q Consensus 87 ~~i~~~~~~~~~~~~~~~~~l~--------------~isl~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~ 142 (265)
+.+.|+|+++.|+. .+..|+ |+.+.+.+|+.++|+||+|+|||||++.|.+...
T Consensus 132 ~ri~Fe~ltp~yP~--er~~Le~~~~~~~~tGiraID~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~i~ 199 (422)
T 3ice_A 132 NKILFENLTPLHAN--SRLRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIA 199 (422)
T ss_dssp TSCCTTTSCEESCC--SBCCCCCTTCCTTHHHHHHHHHHSCCBTTCEEEEECCSSSSHHHHHHHHHHHHH
T ss_pred CCceeccccccCCC--CccccccCCCCcccccceeeeeeeeecCCcEEEEecCCCCChhHHHHHHHHHHh
Confidence 46889999999975 356788 8999999999999999999999999999998763
No 187
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=98.16 E-value=1.9e-06 Score=81.12 Aligned_cols=125 Identities=12% Similarity=0.102 Sum_probs=74.9
Q ss_pred CcceeeceEEEcCCcEEEEEcCCCChHHHHHHHHhcCcCCCccEEEEcCeEEEEecCCCCccccHHHHHh---cCCc---
Q psy1503 104 DLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSLGGTVSYASQEPWIFAATIRQNIL---FGLP--- 177 (265)
Q Consensus 104 ~~~l~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g~i~~v~Q~~~l~~~ti~eni~---~~~~--- 177 (265)
-+.|+++..-+++|+++.|.|++|+|||||+..+++...+..|. .+.|++-+-. ...+...+. ++.+
T Consensus 190 ~~~LD~~~gGl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~-----~Vl~~s~E~s--~~~l~~r~~~~~~~~~~~~ 262 (454)
T 2r6a_A 190 FTELDRMTSGFQRSDLIIVAARPSVGKTAFALNIAQNVATKTNE-----NVAIFSLEMS--AQQLVMRMLCAEGNINAQN 262 (454)
T ss_dssp CHHHHHHHSSBCTTCEEEEECCTTSCHHHHHHHHHHHHHHHSSC-----CEEEEESSSC--HHHHHHHHHHHHHTCCHHH
T ss_pred cHHHHhhcCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCC-----cEEEEECCCC--HHHHHHHHHHHHcCCCHHH
Confidence 34688888889999999999999999999999998877654441 3556554321 112222211 1111
Q ss_pred -----ccHHHHHHHHHHhcchhHHhcCCCCCccccCCCCCCCCHHHHHHHHHHHHHc--cCCCEEEEeCCCCCcC
Q psy1503 178 -----YLRRRYADVIRVCALQDDFDSLPNGDFTVVGERGASLSGGQKARINLARAVY--KNADIYLLDDPLSAVD 245 (265)
Q Consensus 178 -----~~~~~~~~~~~~~~l~~~i~~l~~g~~t~vg~~g~~LSgGqrqRialARal~--~~~~illLDEp~s~LD 245 (265)
...+.+..+.++. ..+...|- .+. ....+|.+|.+ +.||.+. .+|+++++|+++.-.+
T Consensus 263 l~~g~l~~~~~~~~~~a~---~~l~~~~l----~i~-d~~~~s~~~i~--~~~~~l~~~~~~~livID~l~~~~~ 327 (454)
T 2r6a_A 263 LRTGKLTPEDWGKLTMAM---GSLSNAGI----YID-DTPSIRVSDIR--AKCRRLKQESGLGMIVIDYLQLIQG 327 (454)
T ss_dssp HHTSCCCHHHHHHHHHHH---HHHHSSCE----EEE-CCTTCCHHHHH--HHHHHHHTTTCCCEEEEECGGGSCC
T ss_pred HhcCCCCHHHHHHHHHHH---HHHhcCCE----EEE-CCCCCCHHHHH--HHHHHHHHHcCCCEEEEccHHHhcc
Confidence 1122222222221 11222111 111 12478999876 5667665 6899999999998774
No 188
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=98.16 E-value=7.3e-07 Score=72.32 Aligned_cols=34 Identities=21% Similarity=0.445 Sum_probs=29.0
Q ss_pred cCCcEEEEEcCCCChHHHHHHHHhcCcCCCccEEEEcC
Q psy1503 115 KPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSLGG 152 (265)
Q Consensus 115 ~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g 152 (265)
.+|++++|+|++||||||+++.|.+.+ |.+.+++
T Consensus 6 ~~g~~i~l~G~~GsGKSTl~~~l~~~~----g~~~i~~ 39 (175)
T 1knq_A 6 HDHHIYVLMGVSGSGKSAVASEVAHQL----HAAFLDG 39 (175)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHH----TCEEEEG
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHhh----CcEEEeC
Confidence 468999999999999999999998865 6666654
No 189
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=98.15 E-value=9.2e-07 Score=83.96 Aligned_cols=80 Identities=20% Similarity=0.259 Sum_probs=55.8
Q ss_pred ceeeceEEEcCCcEEEEEcCCCChHHHHHHHHhcCcCCCccEEEEcCeEEEEecCCCCccccHHHHHhcCCcccHHHHHH
Q psy1503 106 TLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSLGGTVSYASQEPWIFAATIRQNILFGLPYLRRRYAD 185 (265)
Q Consensus 106 ~l~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g~i~~v~Q~~~l~~~ti~eni~~~~~~~~~~~~~ 185 (265)
.++++++.+++| +.|+||+|+|||||++++.+..... +-++ +..+
T Consensus 40 ~~~~~g~~~p~g--vLL~GppGtGKT~Laraia~~~~~~---------f~~i---------s~~~--------------- 84 (476)
T 2ce7_A 40 KFNRIGARMPKG--ILLVGPPGTGKTLLARAVAGEANVP---------FFHI---------SGSD--------------- 84 (476)
T ss_dssp HHHTTTCCCCSE--EEEECCTTSSHHHHHHHHHHHHTCC---------EEEE---------EGGG---------------
T ss_pred HHhhcCCCCCCe--EEEECCCCCCHHHHHHHHHHHcCCC---------eeeC---------CHHH---------------
Confidence 466777788877 8899999999999999999854210 1111 0000
Q ss_pred HHHHhcchhHHhcCCCCCccccCCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCC
Q psy1503 186 VIRVCALQDDFDSLPNGDFTVVGERGASLSGGQKARINLARAVYKNADIYLLDDPLS 242 (265)
Q Consensus 186 ~~~~~~l~~~i~~l~~g~~t~vg~~g~~LSgGqrqRialARal~~~~~illLDEp~s 242 (265)
....+ +| .|++++|-.+++|....|.|+++||+-+
T Consensus 85 ---------~~~~~-------~g------~~~~~~r~lf~~A~~~~p~ILfIDEid~ 119 (476)
T 2ce7_A 85 ---------FVELF-------VG------VGAARVRDLFAQAKAHAPCIVFIDEIDA 119 (476)
T ss_dssp ---------TTTCC-------TT------HHHHHHHHHHHHHHHTCSEEEEEETGGG
T ss_pred ---------HHHHH-------hc------ccHHHHHHHHHHHHhcCCCEEEEechhh
Confidence 00000 11 2678999999999999999999999943
No 190
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=98.15 E-value=5.8e-07 Score=86.84 Aligned_cols=40 Identities=28% Similarity=0.341 Sum_probs=36.4
Q ss_pred EEcCCcEEEEEcCCCChHHHHHHHHhcCcCCCcc-EEE-EcC
Q psy1503 113 TFKPKQLACIIGAIGAGKTSLLHIILNELRISSG-KVS-LGG 152 (265)
Q Consensus 113 ~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G-~i~-~~g 152 (265)
.+++|++++|+|+||||||||+++|++.+.|++| ++. ++|
T Consensus 365 ~~~~G~iI~LiG~sGSGKSTLar~La~~L~~~~G~~i~~lDg 406 (552)
T 3cr8_A 365 RERQGFTVFFTGLSGAGKSTLARALAARLMEMGGRCVTLLDG 406 (552)
T ss_dssp GGGSCEEEEEEESSCHHHHHHHHHHHHHHHTTCSSCEEEESS
T ss_pred ccccceEEEEECCCCChHHHHHHHHHHhhcccCCceEEEECC
Confidence 5789999999999999999999999999999987 674 776
No 191
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=98.12 E-value=3.2e-07 Score=90.48 Aligned_cols=62 Identities=19% Similarity=0.222 Sum_probs=41.4
Q ss_pred eEEEcCCcEEEEEcCCCChHHHHHHHHhcCcCC--CccEEEEcC-------------eEEEEecCCCCccccHHHHHh
Q psy1503 111 SITFKPKQLACIIGAIGAGKTSLLHIILNELRI--SSGKVSLGG-------------TVSYASQEPWIFAATIRQNIL 173 (265)
Q Consensus 111 sl~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~--~~G~i~~~g-------------~i~~v~Q~~~l~~~ti~eni~ 173 (265)
+++++++..++|+|++|+|||||++.|++...+ ..|+| .+| .+++.+|...++..+++.||.
T Consensus 3 s~~~~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V-~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~~nli 79 (665)
T 2dy1_A 3 TEGGAMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRV-EEGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLL 79 (665)
T ss_dssp ---CCCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCG-GGTCCSSCCSHHHHHTTSCCSCEEEEEEETTEEEEEE
T ss_pred CCccCCCcEEEEECCCCChHHHHHHHHHHhcCCCCcccee-cCCcccccCCHHHHhcCCeEEecceEEeeCCEEEEEE
Confidence 456788999999999999999999999976654 56766 333 145555555444444444543
No 192
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=98.05 E-value=5.2e-06 Score=75.55 Aligned_cols=46 Identities=24% Similarity=0.221 Sum_probs=35.6
Q ss_pred CCCCCHHHHHHHHHHHHHccCCCEEEEe-CCCCCcCHHHHHHHHHHHH
Q psy1503 211 GASLSGGQKARINLARAVYKNADIYLLD-DPLSAVDMHVGKHLFEDCI 257 (265)
Q Consensus 211 g~~LSgGqrqRialARal~~~~~illLD-Ep~s~LD~~~~~~i~~~~i 257 (265)
...+|+|++|++. +.+...++-++++| ++.+++|.....++++...
T Consensus 229 ~~~~~~~~~~~~~-~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~ 275 (357)
T 2e87_A 229 ISERNEIEKQAIL-ALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVH 275 (357)
T ss_dssp STTSCHHHHHHHH-GGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHH
T ss_pred hhhhhHHHHHHHH-HHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHH
Confidence 3468999999886 55555677788999 9999999988777766543
No 193
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=98.00 E-value=2.7e-06 Score=79.30 Aligned_cols=49 Identities=24% Similarity=0.435 Sum_probs=37.6
Q ss_pred cEEEEeEEEEeCCCCCCcceeeceEEEcCCcEEEEEcCCCChHHHHHHHHhcCcCCCc
Q psy1503 88 HVSLDNVTAQWSLQNADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISS 145 (265)
Q Consensus 88 ~i~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~ 145 (265)
.|+++|+ .+|.. .. .+++.+|++++|+||||||||||+.+|.++..+.+
T Consensus 6 ~l~~~~~-~~~~~------~~--~~~~~~~~~~~i~G~nG~GKstll~ai~~~~~~~~ 54 (430)
T 1w1w_A 6 GLELSNF-KSYRG------VT--KVGFGESNFTSIIGPNGSGKSNMMDAISFVLGVRS 54 (430)
T ss_dssp EEEEESC-SSCCS------EE--EEECTTCSEEEEECSTTSSHHHHHHHHHHHTTC--
T ss_pred EEEEeCE-EEECC------ce--eEEecCCCEEEEECCCCCCHHHHHHHHHhhhcccc
Confidence 4677777 56631 12 35577899999999999999999999999887765
No 194
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=97.98 E-value=1.1e-06 Score=79.67 Aligned_cols=46 Identities=24% Similarity=0.177 Sum_probs=41.0
Q ss_pred cceeeceEEEcCCcEEEEEcCCCChHHHHHHHHhcCcCCCccEEEE
Q psy1503 105 LTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSL 150 (265)
Q Consensus 105 ~~l~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~ 150 (265)
.+++++++.+.+|.+++|+|++|+|||||++.|++.+.+..|++.+
T Consensus 44 ~~~~~l~~~~~~~~~i~i~G~~g~GKSTl~~~l~~~~~~~~~~v~v 89 (341)
T 2p67_A 44 QLLDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAV 89 (341)
T ss_dssp HHHHHHGGGCSCSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEE
T ss_pred HHHHhCCcccCCCEEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEE
Confidence 4788999999999999999999999999999999998877776644
No 195
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=97.97 E-value=2.9e-06 Score=68.40 Aligned_cols=28 Identities=25% Similarity=0.532 Sum_probs=24.9
Q ss_pred CCcEEEEEcCCCChHHHHHHHHhcCcCC
Q psy1503 116 PKQLACIIGAIGAGKTSLLHIILNELRI 143 (265)
Q Consensus 116 ~G~~~~ivG~~GsGKSTLl~~l~g~~~~ 143 (265)
.|++++|+||+||||||++++|.+.+.+
T Consensus 3 ~~~~i~l~G~~GsGKSTl~~~La~~l~~ 30 (173)
T 1kag_A 3 EKRNIFLVGPMGAGKSTIGRQLAQQLNM 30 (173)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHTTC
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhCC
Confidence 4688999999999999999999997654
No 196
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=97.94 E-value=7.3e-06 Score=73.45 Aligned_cols=109 Identities=15% Similarity=0.225 Sum_probs=65.7
Q ss_pred cceeeceEEEcCCcEEEEEcCCCChHHHHHHHHhcCcCCCccEEEEcCeEEEEecCCCCccccHHHHHhcCCcccHHHHH
Q psy1503 105 LTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSLGGTVSYASQEPWIFAATIRQNILFGLPYLRRRYA 184 (265)
Q Consensus 105 ~~l~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g~i~~v~Q~~~l~~~ti~eni~~~~~~~~~~~~ 184 (265)
+.|+++.--+++|+++.|.|++|+|||||+..++..... .| ..+.|++=+ .+..+- ..
T Consensus 56 ~~LD~~lgGl~~G~l~li~G~pG~GKTtl~l~ia~~~a~-~g-----~~vl~~slE-----~s~~~l-----------~~ 113 (315)
T 3bh0_A 56 TELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKNMSD-ND-----DVVNLHSLE-----MGKKEN-----------IK 113 (315)
T ss_dssp HHHHHHHSSBCTTCEEEEECCTTSSHHHHHHHHHHHHHT-TT-----CEEEEEESS-----SCHHHH-----------HH
T ss_pred HHHHhhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHH-cC-----CeEEEEECC-----CCHHHH-----------HH
Confidence 457777767999999999999999999998877643321 22 235555422 121111 11
Q ss_pred HHHHH-hcchhHHhcCCCCCccccCCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCcC
Q psy1503 185 DVIRV-CALQDDFDSLPNGDFTVVGERGASLSGGQKARINLARAVYKNADIYLLDDPLSAVD 245 (265)
Q Consensus 185 ~~~~~-~~l~~~i~~l~~g~~t~vg~~g~~LSgGqrqRialARal~~~~~illLDEp~s~LD 245 (265)
+.... .++. +..+..+ -..||.++++|++.|...+.++++++.|+|...++
T Consensus 114 R~~~~~~~i~--~~~l~~~--------~~~l~~~~~~~l~~a~~~l~~~~i~i~d~~~~~~~ 165 (315)
T 3bh0_A 114 RLIVTAGSIN--AQKIKAA--------RRDFASEDWGKLSMAIGEISNSNINIFDKAGQSVN 165 (315)
T ss_dssp HHHHHHTTCC--HHHHHSC--------HHHHCSSCHHHHHHHHHHHHTSCEEEECCSCCBHH
T ss_pred HHHHHHcCCC--HHHHhcC--------CCCCCHHHHHHHHHHHHHHhCCCEEEECCCCCCHH
Confidence 11111 1111 1111010 01288888999998888888888998888865543
No 197
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=97.92 E-value=2.8e-06 Score=69.23 Aligned_cols=36 Identities=25% Similarity=0.237 Sum_probs=29.7
Q ss_pred cCCcEEEEEcCCCChHHHHHHHHhcCcCCCcc--EEEEc
Q psy1503 115 KPKQLACIIGAIGAGKTSLLHIILNELRISSG--KVSLG 151 (265)
Q Consensus 115 ~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G--~i~~~ 151 (265)
++|++++|+|++||||||+.+.|.+.+.+ .| .+.++
T Consensus 3 ~~g~~i~l~G~~GsGKST~~~~L~~~l~~-~g~~~i~~d 40 (179)
T 2pez_A 3 MRGCTVWLTGLSGAGKTTVSMALEEYLVC-HGIPCYTLD 40 (179)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHHH-TTCCEEEEE
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHhh-CCCcEEEEC
Confidence 47899999999999999999999998765 56 45444
No 198
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=97.90 E-value=5e-06 Score=71.21 Aligned_cols=41 Identities=22% Similarity=0.357 Sum_probs=30.6
Q ss_pred eeeceEEEc---CCcEEEEEcCCCChHHHHHHHHhcCcCCCccEE
Q psy1503 107 LNAVSITFK---PKQLACIIGAIGAGKTSLLHIILNELRISSGKV 148 (265)
Q Consensus 107 l~~isl~i~---~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i 148 (265)
|+++|+.+. +|.+++|.|++||||||+++.|...+.+ .+.+
T Consensus 13 ~~~~~~~~~~~~~g~~i~i~G~~GsGKsT~~~~l~~~l~~-~~~~ 56 (229)
T 4eaq_A 13 LGTENLYFQSNAMSAFITFEGPEGSGKTTVINEVYHRLVK-DYDV 56 (229)
T ss_dssp -------CCCCCCCEEEEEECCTTSCHHHHHHHHHHHHTT-TSCE
T ss_pred ccCCCeeEeecCCCeEEEEEcCCCCCHHHHHHHHHHHHhc-CCCc
Confidence 666677666 8999999999999999999999999887 5555
No 199
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=97.89 E-value=6.4e-06 Score=65.92 Aligned_cols=30 Identities=43% Similarity=0.674 Sum_probs=24.3
Q ss_pred eeceEEEcCCcEEEEEcCCCChHHHHHHHHh
Q psy1503 108 NAVSITFKPKQLACIIGAIGAGKTSLLHIIL 138 (265)
Q Consensus 108 ~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~ 138 (265)
++..+++.+| +++|+|||||||||++.+|.
T Consensus 15 ~~~~i~f~~g-~~~I~G~NGsGKStil~Ai~ 44 (149)
T 1f2t_A 15 SDTVVEFKEG-INLIIGQNGSGKSSLLDAIL 44 (149)
T ss_dssp SSEEEECCSE-EEEEECCTTSSHHHHHHHHH
T ss_pred cceEEEcCCC-eEEEECCCCCCHHHHHHHHH
Confidence 3445555554 99999999999999999985
No 200
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=97.82 E-value=3.2e-06 Score=70.96 Aligned_cols=41 Identities=17% Similarity=0.192 Sum_probs=35.8
Q ss_pred EEEcCCcEEEEEcCCCChHHHHHHHHhcCcCCCcc--EEEEcC
Q psy1503 112 ITFKPKQLACIIGAIGAGKTSLLHIILNELRISSG--KVSLGG 152 (265)
Q Consensus 112 l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G--~i~~~g 152 (265)
+.+++|.+++|+|++||||||+.+.|.+.+.|..| .+.+++
T Consensus 20 ~~~~~~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~~ 62 (211)
T 1m7g_A 20 LRNQRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDG 62 (211)
T ss_dssp HHTSSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECH
T ss_pred ccCCCCCEEEEECCCCCCHHHHHHHHHHHhccccCCcEEEECC
Confidence 55788999999999999999999999999887788 666653
No 201
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=97.81 E-value=6.1e-06 Score=75.15 Aligned_cols=36 Identities=22% Similarity=0.242 Sum_probs=31.5
Q ss_pred cCCcEEEEEcCCCChHHHHHHHHhcCcCCCccEEEE
Q psy1503 115 KPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSL 150 (265)
Q Consensus 115 ~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~ 150 (265)
+++.+++|+|++|||||||++.|.|.+.+.+|+|.+
T Consensus 72 ~~~~~v~lvG~pgaGKSTLln~L~~~~~~~~~~v~V 107 (349)
T 2www_A 72 PLAFRVGLSGPPGAGKSTFIEYFGKMLTERGHKLSV 107 (349)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEE
T ss_pred cCceEEEEEcCCCCCHHHHHHHHHHHhhhcCCeEEE
Confidence 356799999999999999999999988888777655
No 202
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=97.81 E-value=6.1e-06 Score=78.85 Aligned_cols=34 Identities=18% Similarity=0.327 Sum_probs=30.5
Q ss_pred ceeeceEEEcCCcEEEEEcCCCChHHHHHHHHhcC
Q psy1503 106 TLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNE 140 (265)
Q Consensus 106 ~l~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~g~ 140 (265)
.+++++|++.+| +++|+|+||||||||+.+|...
T Consensus 50 ~~~~~~l~f~~g-~n~i~G~NGaGKS~lleAl~~l 83 (517)
T 4ad8_A 50 TITQLELELGGG-FCAFTGETGAGKSIIVDALGLL 83 (517)
T ss_dssp TBSCEEEECCCS-EEEEEESHHHHHHHHTHHHHHH
T ss_pred ceeeEEEecCCC-eEEEEcCCCCCHHHHHHHHHHH
Confidence 477899999999 9999999999999999999443
No 203
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=97.74 E-value=5e-06 Score=80.06 Aligned_cols=47 Identities=32% Similarity=0.535 Sum_probs=41.8
Q ss_pred cceeeceEEEcCCcEEEEEcCCCChHHHHHHHHhcCcCCCccEEEEcC
Q psy1503 105 LTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSLGG 152 (265)
Q Consensus 105 ~~l~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g 152 (265)
.++.++++++ +|+.++|+||+|+|||||+++|.+.+.+..|.|.+++
T Consensus 97 ~~l~~~~~~~-~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~i~~~~ 143 (543)
T 3m6a_A 97 LAVQKLTKSL-KGPILCLAGPPGVGKTSLAKSIAKSLGRKFVRISLGG 143 (543)
T ss_dssp HHHHHHSSSC-CSCEEEEESSSSSSHHHHHHHHHHHHTCEEEEECCCC
T ss_pred HHHHHhcccC-CCCEEEEECCCCCCHHHHHHHHHHhcCCCeEEEEecc
Confidence 3577888888 8999999999999999999999999998888887665
No 204
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=97.73 E-value=3e-05 Score=72.72 Aligned_cols=35 Identities=23% Similarity=0.248 Sum_probs=30.4
Q ss_pred CCcEEEEEcCCCChHHHHHHHHhcCcCCCccEEEE
Q psy1503 116 PKQLACIIGAIGAGKTSLLHIILNELRISSGKVSL 150 (265)
Q Consensus 116 ~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~ 150 (265)
++.+++++||+||||||++..|++.+.+..++|.+
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVll 130 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGL 130 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEE
Confidence 57899999999999999999999999887666543
No 205
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=97.72 E-value=4.8e-05 Score=66.63 Aligned_cols=77 Identities=23% Similarity=0.210 Sum_probs=52.2
Q ss_pred cCCcEEEEEcCCCChHHHHHHHHhcCcCCCccEEEEcCeEEEEecCCCCccccHHHHHhcCCcccHHHHHHHHHHhcchh
Q psy1503 115 KPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSLGGTVSYASQEPWIFAATIRQNILFGLPYLRRRYADVIRVCALQD 194 (265)
Q Consensus 115 ~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g~i~~v~Q~~~l~~~ti~eni~~~~~~~~~~~~~~~~~~~l~~ 194 (265)
.++..+.|.||+|+||||+++++.+.... . +-.+.- +.
T Consensus 52 ~~~~~vll~Gp~GtGKT~la~~la~~~~~---~------~~~i~~-~~-------------------------------- 89 (297)
T 3b9p_A 52 APAKGLLLFGPPGNGKTLLARAVATECSA---T------FLNISA-AS-------------------------------- 89 (297)
T ss_dssp CCCSEEEEESSSSSCHHHHHHHHHHHTTC---E------EEEEES-TT--------------------------------
T ss_pred CCCCeEEEECcCCCCHHHHHHHHHHHhCC---C------eEEeeH-HH--------------------------------
Confidence 35778999999999999999999986521 0 111100 00
Q ss_pred HHhcCCCCCccccCCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCcCH
Q psy1503 195 DFDSLPNGDFTVVGERGASLSGGQKARINLARAVYKNADIYLLDDPLSAVDM 246 (265)
Q Consensus 195 ~i~~l~~g~~t~vg~~g~~LSgGqrqRialARal~~~~~illLDEp~s~LD~ 246 (265)
+.. ..+ -+++++.|..++++...+|.++++||+.+-++.
T Consensus 90 ----l~~---~~~------~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~ 128 (297)
T 3b9p_A 90 ----LTS---KYV------GDGEKLVRALFAVARHMQPSIIFIDEVDSLLSE 128 (297)
T ss_dssp ----TSS---SSC------SCHHHHHHHHHHHHHHTCSEEEEEETGGGTSBC
T ss_pred ----Hhh---ccc------chHHHHHHHHHHHHHHcCCcEEEeccHHHhccc
Confidence 000 001 146788888888888889999999999876653
No 206
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=97.70 E-value=1e-05 Score=66.89 Aligned_cols=55 Identities=25% Similarity=0.347 Sum_probs=38.3
Q ss_pred EEEeCCCCCCcceeeceEEEcCCcEEEEEcCCCChHHHHHHHHhcC--------cCCCccEEEEcC
Q psy1503 95 TAQWSLQNADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNE--------LRISSGKVSLGG 152 (265)
Q Consensus 95 ~~~~~~~~~~~~l~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~g~--------~~~~~G~i~~~g 152 (265)
+++|++ ...+++++++..++. .++++|++|+|||||++.+.+. ..++.+.+.+++
T Consensus 6 ~~~~~~--~~~~l~~~~~~~~~~-ki~lvG~~~vGKSsLi~~l~~~~~~~~~~t~~~~~~~~~~~~ 68 (198)
T 1f6b_A 6 DWIYSG--FSSVLQFLGLYKKTG-KLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELTIAG 68 (198)
T ss_dssp ---------CHHHHHHTCTTCCE-EEEEEEETTSSHHHHHHHHSCC------CCCCCSCEEEEETT
T ss_pred HHHHHH--HHHHHHHhhccCCCc-EEEEECCCCCCHHHHHHHHhcCCCCccCCCCCceeEEEEECC
Confidence 345553 245889999998887 5799999999999999999872 233456777776
No 207
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=97.69 E-value=0.00026 Score=60.09 Aligned_cols=28 Identities=32% Similarity=0.452 Sum_probs=24.3
Q ss_pred EEEEEcCCCChHHHHHHHHhcCcCCCcc
Q psy1503 119 LACIIGAIGAGKTSLLHIILNELRISSG 146 (265)
Q Consensus 119 ~~~ivG~~GsGKSTLl~~l~g~~~~~~G 146 (265)
.++|+|++|+|||||++.|+|...+.++
T Consensus 31 ~i~lvG~~g~GKStlin~l~g~~~~~~~ 58 (239)
T 3lxx_A 31 RIVLVGKTGAGKSATGNSILGRKVFHSG 58 (239)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSCCSCC-
T ss_pred EEEEECCCCCCHHHHHHHHcCCCcCccC
Confidence 5799999999999999999998776655
No 208
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=97.68 E-value=0.00018 Score=64.75 Aligned_cols=31 Identities=23% Similarity=0.310 Sum_probs=26.6
Q ss_pred cCCc--EEEEEcCCCChHHHHHHHHhcCcCCCc
Q psy1503 115 KPKQ--LACIIGAIGAGKTSLLHIILNELRISS 145 (265)
Q Consensus 115 ~~G~--~~~ivG~~GsGKSTLl~~l~g~~~~~~ 145 (265)
..+. .+.|+||+|+|||||++.+.+...+..
T Consensus 40 ~~~~~~~~li~G~~G~GKTtl~~~l~~~~~~~~ 72 (389)
T 1fnn_A 40 PGHHYPRATLLGRPGTGKTVTLRKLWELYKDKT 72 (389)
T ss_dssp TTSSCCEEEEECCTTSSHHHHHHHHHHHHTTSC
T ss_pred CCCCCCeEEEECCCCCCHHHHHHHHHHHHhhhc
Confidence 3456 899999999999999999999887653
No 209
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=97.68 E-value=1.9e-05 Score=64.72 Aligned_cols=32 Identities=31% Similarity=0.312 Sum_probs=26.4
Q ss_pred eceEEEcCCcEEEEEcCCCChHHHHHHHHhcC
Q psy1503 109 AVSITFKPKQLACIIGAIGAGKTSLLHIILNE 140 (265)
Q Consensus 109 ~isl~i~~G~~~~ivG~~GsGKSTLl~~l~g~ 140 (265)
++|++.++|..++|+|++||||||+.+.|...
T Consensus 2 ~~~~~~~~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 2 PGSMEQPKGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp ----CCCSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CcCcCCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 57888999999999999999999999999775
No 210
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=97.66 E-value=3.2e-05 Score=63.38 Aligned_cols=46 Identities=30% Similarity=0.450 Sum_probs=27.1
Q ss_pred ceeeceEEEcCCcEEEEEcCCCChHHHHHHHHhc----CcCCC----ccEEEEcC
Q psy1503 106 TLNAVSITFKPKQLACIIGAIGAGKTSLLHIILN----ELRIS----SGKVSLGG 152 (265)
Q Consensus 106 ~l~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~g----~~~~~----~G~i~~~g 152 (265)
+++++++..++. .++++|++|+|||||++.+.+ .+.|+ .+.+.+++
T Consensus 13 ~l~~~~~~~~~~-ki~~vG~~~vGKSsli~~l~~~~~~~~~~t~~~~~~~~~~~~ 66 (190)
T 1m2o_B 13 VLASLGLWNKHG-KLLFLGLDNAGKTTLLHMLKNDRLATLQPTWHPTSEELAIGN 66 (190)
T ss_dssp -----------C-EEEEEESTTSSHHHHHHHHHHSCCCCCCCCCSCEEEEEEETT
T ss_pred HHHHhhccCCcc-EEEEECCCCCCHHHHHHHHhcCCCCccccCCCCCeEEEEECC
Confidence 678899988776 789999999999999999987 33333 45566666
No 211
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=97.61 E-value=2.1e-05 Score=65.58 Aligned_cols=30 Identities=23% Similarity=0.403 Sum_probs=26.1
Q ss_pred EEcCCcEEEEEcCCCChHHHHHHHHhcCcC
Q psy1503 113 TFKPKQLACIIGAIGAGKTSLLHIILNELR 142 (265)
Q Consensus 113 ~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~ 142 (265)
...+|.+++|+||+||||||+.+.|...++
T Consensus 8 ~~~~~~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 8 HMARIPPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp -CCCCCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred ccccCCEEEEECCCCCCHHHHHHHHHHhCc
Confidence 456899999999999999999999987663
No 212
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=97.61 E-value=1.7e-05 Score=64.87 Aligned_cols=37 Identities=19% Similarity=0.266 Sum_probs=31.5
Q ss_pred EEEcCCcEEEEEcCCCChHHHHHHHHhcCcCCCccEE
Q psy1503 112 ITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKV 148 (265)
Q Consensus 112 l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i 148 (265)
+...+|.++.|+|++||||||+.+.|...+.+..+.+
T Consensus 8 ~~~~~~~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~ 44 (186)
T 2yvu_A 8 KCIEKGIVVWLTGLPGSGKTTIATRLADLLQKEGYRV 44 (186)
T ss_dssp CCCSCCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCE
T ss_pred cccCCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCeE
Confidence 3446789999999999999999999999887766655
No 213
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=97.58 E-value=2.5e-05 Score=73.09 Aligned_cols=52 Identities=13% Similarity=0.151 Sum_probs=41.6
Q ss_pred EeEEEEeCCCCCCcceeeceEEEcCCcEEEEEcCCCChHHHHHHHHhcCcCCCccEEEE
Q psy1503 92 DNVTAQWSLQNADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSL 150 (265)
Q Consensus 92 ~~~~~~~~~~~~~~~l~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~ 150 (265)
+++++.|+.. . ++++|+ ++++++++|++||||||++..|++.+.+..|+|.+
T Consensus 80 ~~L~~~~~~~---~--~~i~l~--~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vll 131 (425)
T 2ffh_A 80 EALKEALGGE---A--RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLL 131 (425)
T ss_dssp HHHHHHTTSS---C--CCCCCC--SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEE
T ss_pred HHHHHHhCCC---c--ccccCC--CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEE
Confidence 3455556422 1 567887 89999999999999999999999999998887765
No 214
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=97.58 E-value=9.1e-05 Score=59.67 Aligned_cols=27 Identities=30% Similarity=0.320 Sum_probs=23.4
Q ss_pred cCCcEEEEEcCCCChHHHHHHHHhcCc
Q psy1503 115 KPKQLACIIGAIGAGKTSLLHIILNEL 141 (265)
Q Consensus 115 ~~G~~~~ivG~~GsGKSTLl~~l~g~~ 141 (265)
++|..++|+|++|+|||||++.+.+..
T Consensus 2 ~~~~ki~ivG~~g~GKStLl~~l~~~~ 28 (172)
T 2gj8_A 2 SHGMKVVIAGRPNAGKSSLLNALAGRE 28 (172)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 467899999999999999999999864
No 215
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=97.57 E-value=3.7e-05 Score=64.45 Aligned_cols=29 Identities=45% Similarity=0.688 Sum_probs=23.6
Q ss_pred eceEEEcCCcEEEEEcCCCChHHHHHHHHh
Q psy1503 109 AVSITFKPKQLACIIGAIGAGKTSLLHIIL 138 (265)
Q Consensus 109 ~isl~i~~G~~~~ivG~~GsGKSTLl~~l~ 138 (265)
+.++++.+ .+++|+|||||||||++.+|.
T Consensus 16 ~~~i~f~~-~~~~I~G~NgsGKStil~ai~ 44 (203)
T 3qks_A 16 DTVVEFKE-GINLIIGQNGSGKSSLLDAIL 44 (203)
T ss_dssp SEEEECCS-EEEEEECCTTSSHHHHHHHHH
T ss_pred ceEEEeCC-CeEEEEcCCCCCHHHHHHHHH
Confidence 44555555 499999999999999999883
No 216
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=97.56 E-value=2.3e-05 Score=74.74 Aligned_cols=44 Identities=20% Similarity=0.340 Sum_probs=38.0
Q ss_pred cceeeceEEEcCCcEEEEEcCCCChHHHHHHHHhcCcCCCccEEEEcC
Q psy1503 105 LTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSLGG 152 (265)
Q Consensus 105 ~~l~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g 152 (265)
..++++++.+++| +.|+||+|+|||||+++|.+... .+.+.+++
T Consensus 54 ~~~~~lg~~ip~G--vLL~GppGtGKTtLaraIa~~~~--~~~i~i~g 97 (499)
T 2dhr_A 54 SRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR--VPFITASG 97 (499)
T ss_dssp GGTTTTSCCCCSE--EEEECSSSSSHHHHHHHHHHHTT--CCEEEEEG
T ss_pred hhhhhccCCCCce--EEEECCCCCCHHHHHHHHHHHhC--CCEEEEeh
Confidence 4688899999999 99999999999999999999874 56666654
No 217
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=97.56 E-value=0.00021 Score=64.02 Aligned_cols=107 Identities=17% Similarity=0.227 Sum_probs=60.2
Q ss_pred EEcCCcEEEEEcCCCChHHHHHHHHhcCc-CCC-ccEEEEcCeEEEEecCCCCccccHHHHHhcCCcccHHHHHHHHHHh
Q psy1503 113 TFKPKQLACIIGAIGAGKTSLLHIILNEL-RIS-SGKVSLGGTVSYASQEPWIFAATIRQNILFGLPYLRRRYADVIRVC 190 (265)
Q Consensus 113 ~i~~G~~~~ivG~~GsGKSTLl~~l~g~~-~~~-~G~i~~~g~i~~v~Q~~~l~~~ti~eni~~~~~~~~~~~~~~~~~~ 190 (265)
-+++|+++.|.||+|||||||+..++... .|. .|. .++.+.|+.-+..+-+..+.+. ++..
T Consensus 103 Gl~~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg--~~~~vlyi~~e~~~~~~~l~~~---------------~~~~ 165 (324)
T 2z43_A 103 GIETRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGG--LSGKAVYIDTEGTFRWERIENM---------------AKAL 165 (324)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTC--CSCEEEEEESSSCCCHHHHHHH---------------HHHT
T ss_pred CCCCCcEEEEECCCCCCHhHHHHHHHHHHhcccccCC--CCCeEEEEECCCCCCHHHHHHH---------------HHHh
Confidence 58999999999999999999998887643 231 110 1234566654432212222222 1111
Q ss_pred cchh--HHhcCCCCCccccCCCCCCCCHH-HHHHHHHHHHHc---cCCCEEEEeCCCCCcC
Q psy1503 191 ALQD--DFDSLPNGDFTVVGERGASLSGG-QKARINLARAVY---KNADIYLLDDPLSAVD 245 (265)
Q Consensus 191 ~l~~--~i~~l~~g~~t~vg~~g~~LSgG-qrqRialARal~---~~~~illLDEp~s~LD 245 (265)
+... .++.+ .+.+ ..+.. +.+.+..++.++ .+++++|+|+.++-..
T Consensus 166 g~~~~~~~~~l------~~~~---~~~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl~~l~~ 217 (324)
T 2z43_A 166 GLDIDNVMNNI------YYIR---AINTDHQIAIVDDLQELVSKDPSIKLIVVDSVTSHFR 217 (324)
T ss_dssp TCCHHHHHHTE------EEEE---CCSHHHHHHHHHHHHHHHHHCTTEEEEEETTTTHHHH
T ss_pred CCCHHHHhccE------EEEe---CCCHHHHHHHHHHHHHHHHhccCCCEEEEeCcHHHhh
Confidence 1110 01110 0000 12222 346677777777 6799999999987664
No 218
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=97.50 E-value=1.7e-05 Score=70.75 Aligned_cols=42 Identities=21% Similarity=0.173 Sum_probs=36.2
Q ss_pred ee-ceEEEcCCcEEEEEcCCCChHHHHHHHHhcCcCCCccEEEE
Q psy1503 108 NA-VSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSL 150 (265)
Q Consensus 108 ~~-isl~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~ 150 (265)
++ ++++.+ |++++++|++|+||||++..|++.+.+..++|.+
T Consensus 89 ~~~i~~~~~-~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l 131 (297)
T 1j8m_F 89 EPKVIPDKI-PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGL 131 (297)
T ss_dssp CCCCSCSSS-SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEE
T ss_pred ccccccCCC-CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEE
Confidence 45 778876 9999999999999999999999999887776654
No 219
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=97.50 E-value=8.1e-05 Score=69.54 Aligned_cols=36 Identities=31% Similarity=0.462 Sum_probs=30.7
Q ss_pred cEEEEEcCCCChHHHHHHHHhcCcC------------CCccEEEEcCe
Q psy1503 118 QLACIIGAIGAGKTSLLHIILNELR------------ISSGKVSLGGT 153 (265)
Q Consensus 118 ~~~~ivG~~GsGKSTLl~~l~g~~~------------~~~G~i~~~g~ 153 (265)
-.++|+|++|+|||||++.|+|... +..|.+.++|.
T Consensus 181 ~kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~ 228 (439)
T 1mky_A 181 IKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGR 228 (439)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTE
T ss_pred ceEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCE
Confidence 3799999999999999999999853 67788888885
No 220
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=97.47 E-value=3.3e-05 Score=65.79 Aligned_cols=129 Identities=14% Similarity=0.162 Sum_probs=64.4
Q ss_pred EEcCCcEEEEEcCCCChHHHHHHHHhcCcCCCccEEEEcCeEEEEecCCCCcc-ccHHHHHhcCCcccHHHHHHHHHHhc
Q psy1503 113 TFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSLGGTVSYASQEPWIFA-ATIRQNILFGLPYLRRRYADVIRVCA 191 (265)
Q Consensus 113 ~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g~i~~v~Q~~~l~~-~ti~eni~~~~~~~~~~~~~~~~~~~ 191 (265)
.+..|+.++++||+||||||++.+++.......|. ...+.++.+.|.... .++.+|+....... +...++
T Consensus 72 ~i~~g~~~~i~g~TGsGKTt~~~~~~~~~~~~~~~---~~~~~~l~~~p~~~la~q~~~~~~~~~~~~------~~~~~g 142 (235)
T 3llm_A 72 AISQNSVVIIRGATGCGKTTQVPQFILDDFIQNDR---AAECNIVVTQPRRISAVSVAERVAFERGEE------PGKSCG 142 (235)
T ss_dssp HHHHCSEEEEECCTTSSHHHHHHHHHHHHHHHTTC---GGGCEEEEEESSHHHHHHHHHHHHHTTTCC------TTSSEE
T ss_pred HHhcCCEEEEEeCCCCCcHHhHHHHHhcchhhcCC---CCceEEEEeccchHHHHHHHHHHHHHhccc------cCceEE
Confidence 34679999999999999999887765432222221 112445556665432 35555554211100 000001
Q ss_pred chhHHhcCCCCCccccCCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCC-CcCHHHHHHHHHHH
Q psy1503 192 LQDDFDSLPNGDFTVVGERGASLSGGQKARINLARAVYKNADIYLLDDPLS-AVDMHVGKHLFEDC 256 (265)
Q Consensus 192 l~~~i~~l~~g~~t~vg~~g~~LSgGqrqRialARal~~~~~illLDEp~s-~LD~~~~~~i~~~~ 256 (265)
............ +.+..--+.|+-.+.. +.-+.+-+++|+||+-. ++|.......++..
T Consensus 143 ~~~~~~~~~~~~----~~~Ivv~Tpg~l~~~l--~~~l~~~~~lVlDEah~~~~~~~~~~~~l~~i 202 (235)
T 3llm_A 143 YSVRFESILPRP----HASIMFCTVGVLLRKL--EAGIRGISHVIVDEIHERDINTDFLLVVLRDV 202 (235)
T ss_dssp EEETTEEECCCS----SSEEEEEEHHHHHHHH--HHCCTTCCEEEECCTTSCCHHHHHHHHHHHHH
T ss_pred EeechhhccCCC----CCeEEEECHHHHHHHH--HhhhcCCcEEEEECCccCCcchHHHHHHHHHH
Confidence 000000000000 0001113446555543 34678999999999976 57776554444433
No 221
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=97.46 E-value=5.7e-05 Score=62.63 Aligned_cols=21 Identities=29% Similarity=0.686 Sum_probs=20.1
Q ss_pred EEEEEcCCCChHHHHHHHHhc
Q psy1503 119 LACIIGAIGAGKTSLLHIILN 139 (265)
Q Consensus 119 ~~~ivG~~GsGKSTLl~~l~g 139 (265)
+++|+|++||||||+.+.|.+
T Consensus 4 ~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999988
No 222
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=97.44 E-value=4.5e-05 Score=69.74 Aligned_cols=43 Identities=19% Similarity=0.272 Sum_probs=34.6
Q ss_pred ceeeceE--EEcCCcEEEEEcCCCChHHHHHHHHhcCcCCCccEE
Q psy1503 106 TLNAVSI--TFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKV 148 (265)
Q Consensus 106 ~l~~isl--~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i 148 (265)
.|+.+-= -+++|+++.|.||+|||||||+..++....+..|.+
T Consensus 48 ~LD~~Lg~GGi~~G~i~~I~GppGsGKSTLal~la~~~~~~gg~V 92 (356)
T 3hr8_A 48 AIDIATGVGGYPRGRIVEIFGQESSGKTTLALHAIAEAQKMGGVA 92 (356)
T ss_dssp HHHHHTSSSSEETTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCE
T ss_pred HHHHHhccCCccCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeE
Confidence 4554322 489999999999999999999999999887765543
No 223
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=97.44 E-value=6.5e-05 Score=69.61 Aligned_cols=40 Identities=18% Similarity=0.373 Sum_probs=32.8
Q ss_pred EEcCCcEEEEEcCCCChHHHHHHHHhcC-----------cCCCccEEEEcC
Q psy1503 113 TFKPKQLACIIGAIGAGKTSLLHIILNE-----------LRISSGKVSLGG 152 (265)
Q Consensus 113 ~i~~G~~~~ivG~~GsGKSTLl~~l~g~-----------~~~~~G~i~~~g 152 (265)
.+..|..++|+|++|+|||||++.|.|. ..|..|.+.+.+
T Consensus 18 ~i~~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~ 68 (396)
T 2ohf_A 18 RFGTSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPD 68 (396)
T ss_dssp CSSSCCCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEECCC
T ss_pred hccCCCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEECC
Confidence 4567889999999999999999999998 677788877654
No 224
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=97.42 E-value=6.5e-05 Score=62.13 Aligned_cols=21 Identities=24% Similarity=0.499 Sum_probs=20.3
Q ss_pred EEEEEcCCCChHHHHHHHHhc
Q psy1503 119 LACIIGAIGAGKTSLLHIILN 139 (265)
Q Consensus 119 ~~~ivG~~GsGKSTLl~~l~g 139 (265)
+++|+|++||||||+.+.|.+
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 689999999999999999999
No 225
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=97.42 E-value=0.0003 Score=55.92 Aligned_cols=23 Identities=22% Similarity=0.413 Sum_probs=21.2
Q ss_pred EEEEEcCCCChHHHHHHHHhcCc
Q psy1503 119 LACIIGAIGAGKTSLLHIILNEL 141 (265)
Q Consensus 119 ~~~ivG~~GsGKSTLl~~l~g~~ 141 (265)
.++|+|++|+|||||++.+.|..
T Consensus 5 ~v~lvG~~gvGKStL~~~l~~~~ 27 (165)
T 2wji_A 5 EIALIGNPNVGKSTIFNALTGEN 27 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHHCCS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999999854
No 226
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=97.38 E-value=5.1e-05 Score=62.83 Aligned_cols=25 Identities=24% Similarity=0.353 Sum_probs=22.7
Q ss_pred CcEEEEEcCCCChHHHHHHHHhcCc
Q psy1503 117 KQLACIIGAIGAGKTSLLHIILNEL 141 (265)
Q Consensus 117 G~~~~ivG~~GsGKSTLl~~l~g~~ 141 (265)
..+++|+|++||||||+.+.|.+.+
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~l 42 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEAC 42 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 5689999999999999999998765
No 227
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=97.37 E-value=0.00018 Score=57.93 Aligned_cols=22 Identities=23% Similarity=0.477 Sum_probs=20.6
Q ss_pred EEEEEcCCCChHHHHHHHHhcC
Q psy1503 119 LACIIGAIGAGKTSLLHIILNE 140 (265)
Q Consensus 119 ~~~ivG~~GsGKSTLl~~l~g~ 140 (265)
.++|+|++|+|||||++.+.+.
T Consensus 9 ~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 9 EIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999999984
No 228
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=97.32 E-value=0.00013 Score=66.81 Aligned_cols=47 Identities=19% Similarity=0.240 Sum_probs=35.9
Q ss_pred CCcceeeceEEE---cCCcEEEEEcCCCChHHHHHHHHhcCcCCCccEEEE
Q psy1503 103 ADLTLNAVSITF---KPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSL 150 (265)
Q Consensus 103 ~~~~l~~isl~i---~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~ 150 (265)
+.+++-|. +.. ..+..++|+||+||||||+++.++....+..+.|.+
T Consensus 19 g~~v~~d~-~~~~~~~~~~~~~i~G~~G~GKs~~~~~~~~~~~~~~~~~~~ 68 (392)
T 4ag6_A 19 GGLVLVDI-WKRGGDRTNSNWTILAKPGAGKSFTAKMLLLREYMQGSRVII 68 (392)
T ss_dssp SCEEEECT-TCCBTTBCCCCEEEECCTTSSHHHHHHHHHHHHHTTTCCEEE
T ss_pred CCeEEEec-ccCcCccccCceEEEcCCCCCHHHHHHHHHHHHHHCCCEEEE
Confidence 34555554 222 267789999999999999999999888777777765
No 229
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=97.32 E-value=0.00012 Score=59.48 Aligned_cols=25 Identities=32% Similarity=0.567 Sum_probs=20.8
Q ss_pred EEEEEcCCCChHHHHHHHHhcCcCC
Q psy1503 119 LACIIGAIGAGKTSLLHIILNELRI 143 (265)
Q Consensus 119 ~~~ivG~~GsGKSTLl~~l~g~~~~ 143 (265)
.++|+|++|+|||||++.+.+...+
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~~~~ 28 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKTKKS 28 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC---
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCc
Confidence 5899999999999999999996433
No 230
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=97.30 E-value=9.8e-05 Score=60.67 Aligned_cols=28 Identities=29% Similarity=0.350 Sum_probs=24.2
Q ss_pred CcEEEEEcCCCChHHHHHHHHhcCcCCC
Q psy1503 117 KQLACIIGAIGAGKTSLLHIILNELRIS 144 (265)
Q Consensus 117 G~~~~ivG~~GsGKSTLl~~l~g~~~~~ 144 (265)
-.+++|+|++|||||||++.|++.+.+.
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~l~~~ 33 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPALCAR 33 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHHHT
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHhcccc
Confidence 3589999999999999999999876543
No 231
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=97.30 E-value=1.9e-05 Score=72.15 Aligned_cols=52 Identities=19% Similarity=0.281 Sum_probs=35.0
Q ss_pred CcEEEEeEEEEeCCCCCCcceeeceEEEcCCcEEEEEcCCCChHHHHHHHHhcCcCCCccE
Q psy1503 87 GHVSLDNVTAQWSLQNADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGK 147 (265)
Q Consensus 87 ~~i~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~ 147 (265)
+.+.+.+++..|.. +.++++++|+| +|+|++|+|||||++.|.+...+..+.
T Consensus 16 ~~v~~~~l~~~~~~---k~~~~~~~~~I------~vvG~~g~GKSTLln~L~~~~~~~~~~ 67 (361)
T 2qag_A 16 GYVGFANLPNQVHR---KSVKKGFEFTL------MVVGESGLGKSTLINSLFLTDLYPERV 67 (361)
T ss_dssp -----CCHHHHHHT---HHHHHCCEECE------EECCCTTSCHHHHHHHHTTCCC-----
T ss_pred ceEEeccchHHhCC---eeecCCCCEEE------EEEcCCCCCHHHHHHHHhCCCCCCCCc
Confidence 45788888877742 45788888876 999999999999999998875554443
No 232
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=97.28 E-value=8.6e-05 Score=65.99 Aligned_cols=26 Identities=27% Similarity=0.418 Sum_probs=23.1
Q ss_pred CCcEEEEEcCCCChHHHHHHHHhcCc
Q psy1503 116 PKQLACIIGAIGAGKTSLLHIILNEL 141 (265)
Q Consensus 116 ~G~~~~ivG~~GsGKSTLl~~l~g~~ 141 (265)
++.+++|+|++|+|||||++.|+|..
T Consensus 7 r~~~VaIvG~~nvGKSTLln~L~g~~ 32 (301)
T 1ega_A 7 YCGFIAIVGRPNVGKSTLLNKLLGQK 32 (301)
T ss_dssp EEEEEEEECSSSSSHHHHHHHHHTCS
T ss_pred cCCEEEEECCCCCCHHHHHHHHHCCC
Confidence 34589999999999999999999974
No 233
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=97.27 E-value=6.6e-05 Score=64.83 Aligned_cols=38 Identities=29% Similarity=0.360 Sum_probs=29.7
Q ss_pred EEcCCcEEEEEcCCCChHHHHHHHHhcCcCCCccEEEEcC
Q psy1503 113 TFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSLGG 152 (265)
Q Consensus 113 ~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g 152 (265)
..+++.++.|+|++||||||+.+.|...+. .+.+.+++
T Consensus 28 ~~~~~~~i~l~G~~GsGKSTla~~L~~~l~--~~~~~~~~ 65 (253)
T 2p5t_B 28 SSKQPIAILLGGQSGAGKTTIHRIKQKEFQ--GNIVIIDG 65 (253)
T ss_dssp CCSSCEEEEEESCGGGTTHHHHHHHHHHTT--TCCEEECG
T ss_pred cccCCeEEEEECCCCCCHHHHHHHHHHhcC--CCcEEEec
Confidence 456788999999999999999999988764 23444443
No 234
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=97.26 E-value=0.00012 Score=59.31 Aligned_cols=25 Identities=24% Similarity=0.299 Sum_probs=22.2
Q ss_pred cCCcEEEEEcCCCChHHHHHHHHhc
Q psy1503 115 KPKQLACIIGAIGAGKTSLLHIILN 139 (265)
Q Consensus 115 ~~G~~~~ivG~~GsGKSTLl~~l~g 139 (265)
.+|.+++|+|++||||||+.+.|..
T Consensus 2 ~~g~~I~l~G~~GsGKST~~~~La~ 26 (186)
T 3cm0_A 2 DVGQAVIFLGPPGAGKGTQASRLAQ 26 (186)
T ss_dssp -CEEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4678999999999999999999975
No 235
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.22 E-value=3.6e-05 Score=69.19 Aligned_cols=43 Identities=21% Similarity=0.219 Sum_probs=37.2
Q ss_pred CcceeeceEEEcCCcE--EEEEcCCCChHHHHHHHHhcCcCCCcc
Q psy1503 104 DLTLNAVSITFKPKQL--ACIIGAIGAGKTSLLHIILNELRISSG 146 (265)
Q Consensus 104 ~~~l~~isl~i~~G~~--~~ivG~~GsGKSTLl~~l~g~~~~~~G 146 (265)
..+++.++..++.|++ +.+.||+|+||||+++++++.+.+..+
T Consensus 31 ~~~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~ 75 (340)
T 1sxj_C 31 NEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIYGKNY 75 (340)
T ss_dssp HHHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHHHTTSH
T ss_pred HHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHcCCCc
Confidence 3478889999999988 999999999999999999998765544
No 236
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=97.22 E-value=0.00014 Score=69.43 Aligned_cols=42 Identities=12% Similarity=0.198 Sum_probs=35.4
Q ss_pred eceEEEcCCcEEEEEcCCCChHHHHHHHHhc--CcCCCccEEEE
Q psy1503 109 AVSITFKPKQLACIIGAIGAGKTSLLHIILN--ELRISSGKVSL 150 (265)
Q Consensus 109 ~isl~i~~G~~~~ivG~~GsGKSTLl~~l~g--~~~~~~G~i~~ 150 (265)
.+.+++.++.++.|.|++||||||++++|.. ++.++.|++.+
T Consensus 159 pv~ldL~~~pHlLIaG~TGSGKSt~L~~li~sLl~~~~p~~v~l 202 (512)
T 2ius_A 159 PVVADLAKMPHLLVAGTTGSGASVGVNAMILSMLYKAQPEDVRF 202 (512)
T ss_dssp EEEEEGGGSCSEEEECCTTSSHHHHHHHHHHHHHTTCCTTTEEE
T ss_pred EEEEEcccCceEEEECCCCCCHHHHHHHHHHHHHHhCCCceEEE
Confidence 4778889999999999999999999999876 55666677655
No 237
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=97.19 E-value=0.00022 Score=57.44 Aligned_cols=26 Identities=19% Similarity=0.382 Sum_probs=23.1
Q ss_pred CcEEEEEcCCCChHHHHHHHHhcCcC
Q psy1503 117 KQLACIIGAIGAGKTSLLHIILNELR 142 (265)
Q Consensus 117 G~~~~ivG~~GsGKSTLl~~l~g~~~ 142 (265)
|.++.|+|++||||||+.+.|...+.
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~l~ 28 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 57899999999999999999987653
No 238
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=97.19 E-value=6.5e-05 Score=68.63 Aligned_cols=37 Identities=14% Similarity=0.264 Sum_probs=33.0
Q ss_pred cceeeceEEEcCCcE--EEEEcCCCChHHHHHHHHhcCc
Q psy1503 105 LTLNAVSITFKPKQL--ACIIGAIGAGKTSLLHIILNEL 141 (265)
Q Consensus 105 ~~l~~isl~i~~G~~--~~ivG~~GsGKSTLl~~l~g~~ 141 (265)
.+++.+++.+++|+. ++|+|++||||||+.++|++.+
T Consensus 10 ~il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l 48 (359)
T 2ga8_A 10 DVLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQII 48 (359)
T ss_dssp HHHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHh
Confidence 467888999999999 9999999999999999998754
No 239
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=97.17 E-value=0.0005 Score=64.29 Aligned_cols=38 Identities=24% Similarity=0.235 Sum_probs=31.7
Q ss_pred cceeeceEEEcCCcEEEEEcCCCChHHHHHHHHhcCcC
Q psy1503 105 LTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELR 142 (265)
Q Consensus 105 ~~l~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~ 142 (265)
+.|+.+.--+++|+++.|.|++|+|||||+.-++....
T Consensus 188 ~~LD~~lgGl~~G~l~ii~G~pg~GKT~lal~ia~~~a 225 (444)
T 2q6t_A 188 KELDQLIGTLGPGSLNIIAARPAMGKTAFALTIAQNAA 225 (444)
T ss_dssp HHHHHHHCCCCTTCEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred HhhhhhcCCcCCCcEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 35777665699999999999999999999988776554
No 240
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=97.17 E-value=0.00021 Score=56.91 Aligned_cols=24 Identities=21% Similarity=0.163 Sum_probs=21.0
Q ss_pred cEEEEEcCCCChHHHHHHHHhcCc
Q psy1503 118 QLACIIGAIGAGKTSLLHIILNEL 141 (265)
Q Consensus 118 ~~~~ivG~~GsGKSTLl~~l~g~~ 141 (265)
.+++|+|++||||||+.+.|...+
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~~l 25 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSKEL 25 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 368999999999999999997654
No 241
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=97.11 E-value=7.3e-05 Score=62.04 Aligned_cols=26 Identities=35% Similarity=0.516 Sum_probs=23.2
Q ss_pred EEEEEcCCCChHHHHHHHHhcCcCCC
Q psy1503 119 LACIIGAIGAGKTSLLHIILNELRIS 144 (265)
Q Consensus 119 ~~~ivG~~GsGKSTLl~~l~g~~~~~ 144 (265)
+++|+|++||||||+++.|...+.+.
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~~~ 27 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFRAA 27 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHHEE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHhc
Confidence 68999999999999999999887643
No 242
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=97.11 E-value=0.00028 Score=57.17 Aligned_cols=25 Identities=20% Similarity=0.496 Sum_probs=22.3
Q ss_pred CcEEEEEcCCCChHHHHHHHHhcCc
Q psy1503 117 KQLACIIGAIGAGKTSLLHIILNEL 141 (265)
Q Consensus 117 G~~~~ivG~~GsGKSTLl~~l~g~~ 141 (265)
|.++.|+|++||||||+.+.|...+
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~L~~~l 27 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQLAMDNL 27 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 6789999999999999999997644
No 243
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=97.10 E-value=0.00026 Score=57.57 Aligned_cols=27 Identities=26% Similarity=0.385 Sum_probs=23.6
Q ss_pred cCCcEEEEEcCCCChHHHHHHHHhcCc
Q psy1503 115 KPKQLACIIGAIGAGKTSLLHIILNEL 141 (265)
Q Consensus 115 ~~G~~~~ivG~~GsGKSTLl~~l~g~~ 141 (265)
+++.++.|+|++||||||+.+.|...+
T Consensus 3 ~~~~~I~l~G~~GsGKST~~~~L~~~l 29 (193)
T 2rhm_A 3 QTPALIIVTGHPATGKTTLSQALATGL 29 (193)
T ss_dssp SCCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHc
Confidence 467899999999999999999997644
No 244
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=97.10 E-value=0.00027 Score=60.06 Aligned_cols=26 Identities=23% Similarity=0.263 Sum_probs=23.2
Q ss_pred EcCCcEEEEEcCCCChHHHHHHHHhc
Q psy1503 114 FKPKQLACIIGAIGAGKTSLLHIILN 139 (265)
Q Consensus 114 i~~G~~~~ivG~~GsGKSTLl~~l~g 139 (265)
-++|.+++|+|++||||||+.+.|.+
T Consensus 13 ~~~~~~i~i~G~~gsGKst~~~~l~~ 38 (236)
T 1q3t_A 13 KMKTIQIAIDGPASSGKSTVAKIIAK 38 (236)
T ss_dssp -CCCCEEEEECSSCSSHHHHHHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHH
Confidence 45788999999999999999999986
No 245
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=97.08 E-value=0.00027 Score=55.96 Aligned_cols=20 Identities=25% Similarity=0.566 Sum_probs=18.6
Q ss_pred cEEEEEcCCCChHHHHHHHH
Q psy1503 118 QLACIIGAIGAGKTSLLHII 137 (265)
Q Consensus 118 ~~~~ivG~~GsGKSTLl~~l 137 (265)
.+++|+|++||||||+.+.|
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 37899999999999999999
No 246
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=97.08 E-value=0.0002 Score=61.46 Aligned_cols=34 Identities=24% Similarity=0.350 Sum_probs=24.5
Q ss_pred eeeceEEEcCCcEEEEEcCCCChHHHHHHHHhcCcC
Q psy1503 107 LNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELR 142 (265)
Q Consensus 107 l~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~ 142 (265)
++++++.+++| +.|+||+|+|||||+++|.+...
T Consensus 37 ~~~~~~~~~~~--vll~G~~GtGKT~la~~la~~~~ 70 (257)
T 1lv7_A 37 FQKLGGKIPKG--VLMVGPPGTGKTLLAKAIAGEAK 70 (257)
T ss_dssp C-----CCCCE--EEEECCTTSCHHHHHHHHHHHHT
T ss_pred HHHcCCCCCCe--EEEECcCCCCHHHHHHHHHHHcC
Confidence 44445555555 89999999999999999998764
No 247
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=97.07 E-value=0.00029 Score=57.70 Aligned_cols=24 Identities=25% Similarity=0.439 Sum_probs=21.8
Q ss_pred CcEEEEEcCCCChHHHHHHHHhcC
Q psy1503 117 KQLACIIGAIGAGKTSLLHIILNE 140 (265)
Q Consensus 117 G~~~~ivG~~GsGKSTLl~~l~g~ 140 (265)
..+++|+|++||||||+.+.|...
T Consensus 8 ~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 8 PIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHC
Confidence 357999999999999999999885
No 248
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=97.07 E-value=0.00011 Score=63.16 Aligned_cols=25 Identities=20% Similarity=0.310 Sum_probs=21.4
Q ss_pred CCcEEEEEcCCCChHHHHHHHHhcC
Q psy1503 116 PKQLACIIGAIGAGKTSLLHIILNE 140 (265)
Q Consensus 116 ~G~~~~ivG~~GsGKSTLl~~l~g~ 140 (265)
..-+++|+||+||||||+.+.|...
T Consensus 8 ~~~~i~i~G~~GsGKsTla~~la~~ 32 (233)
T 3r20_A 8 GSLVVAVDGPAGTGKSSVSRGLARA 32 (233)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3458999999999999999999843
No 249
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=97.04 E-value=0.00038 Score=57.15 Aligned_cols=26 Identities=23% Similarity=0.235 Sum_probs=24.2
Q ss_pred CCcEEEEEcCCCChHHHHHHHHhcCc
Q psy1503 116 PKQLACIIGAIGAGKTSLLHIILNEL 141 (265)
Q Consensus 116 ~G~~~~ivG~~GsGKSTLl~~l~g~~ 141 (265)
+|.+++|+|+.||||||+.+.|...+
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 67899999999999999999998876
No 250
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=97.01 E-value=0.00041 Score=63.25 Aligned_cols=31 Identities=29% Similarity=0.549 Sum_probs=26.3
Q ss_pred eeeceEEEcCCcEEEEEcCCCChHHHHHHHHh
Q psy1503 107 LNAVSITFKPKQLACIIGAIGAGKTSLLHIIL 138 (265)
Q Consensus 107 l~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~ 138 (265)
+++..+++.+ .+++|+|||||||||++.+|.
T Consensus 16 ~~~~~i~f~~-gl~vi~G~NGaGKT~ileAI~ 46 (371)
T 3auy_A 16 HVNSRIKFEK-GIVAIIGENGSGKSSIFEAVF 46 (371)
T ss_dssp EEEEEEECCS-EEEEEEECTTSSHHHHHHHHH
T ss_pred ccceEEecCC-CeEEEECCCCCCHHHHHHHHH
Confidence 4667777766 599999999999999999874
No 251
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=97.00 E-value=0.00035 Score=61.69 Aligned_cols=35 Identities=26% Similarity=0.343 Sum_probs=27.0
Q ss_pred cCCcEEEEEcCCCChHHHHHHHHhcCcCCCccEEEEc
Q psy1503 115 KPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSLG 151 (265)
Q Consensus 115 ~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~ 151 (265)
..+.++.|+||+||||||+.+.|...++ .|.+.++
T Consensus 31 ~~~~livl~G~sGsGKSTla~~L~~~~~--~~~~~Is 65 (287)
T 1gvn_B 31 ESPTAFLLGGQPGSGKTSLRSAIFEETQ--GNVIVID 65 (287)
T ss_dssp SSCEEEEEECCTTSCTHHHHHHHHHHTT--TCCEEEC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhC--CCeEEEe
Confidence 3567899999999999999999987543 2445444
No 252
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=97.00 E-value=0.00049 Score=64.33 Aligned_cols=26 Identities=38% Similarity=0.427 Sum_probs=23.1
Q ss_pred CcEEEEEcCCCChHHHHHHHHhcCcC
Q psy1503 117 KQLACIIGAIGAGKTSLLHIILNELR 142 (265)
Q Consensus 117 G~~~~ivG~~GsGKSTLl~~l~g~~~ 142 (265)
+..+.|.||+|+|||||+++|.+.+.
T Consensus 130 ~~~lll~Gp~G~GKTtLa~aia~~l~ 155 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQSIGNYVV 155 (440)
T ss_dssp SCCEEEECSSSSSHHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 46899999999999999999998763
No 253
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=96.99 E-value=0.00028 Score=58.57 Aligned_cols=23 Identities=35% Similarity=0.563 Sum_probs=19.8
Q ss_pred EEEEEcCCCChHHHHHHHHhcCc
Q psy1503 119 LACIIGAIGAGKTSLLHIILNEL 141 (265)
Q Consensus 119 ~~~ivG~~GsGKSTLl~~l~g~~ 141 (265)
.+.|+||||||||||++.|+...
T Consensus 3 pIVi~GPSG~GK~Tl~~~L~~~~ 25 (186)
T 1ex7_A 3 PIVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHhC
Confidence 37899999999999999987543
No 254
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=96.99 E-value=0.00041 Score=56.18 Aligned_cols=26 Identities=31% Similarity=0.316 Sum_probs=22.2
Q ss_pred CCcEEEEEcCCCChHHHHHHHHhcCc
Q psy1503 116 PKQLACIIGAIGAGKTSLLHIILNEL 141 (265)
Q Consensus 116 ~G~~~~ivG~~GsGKSTLl~~l~g~~ 141 (265)
.+..+.|+|++||||||+.+.|...+
T Consensus 4 ~~~~i~l~G~~GsGKst~a~~La~~l 29 (185)
T 3trf_A 4 NLTNIYLIGLMGAGKTSVGSQLAKLT 29 (185)
T ss_dssp -CCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 36789999999999999999997644
No 255
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=96.98 E-value=0.00029 Score=70.90 Aligned_cols=33 Identities=30% Similarity=0.410 Sum_probs=29.7
Q ss_pred eEEEcCCcEEEEEcCCCChHHHHHHHHhcCcCC
Q psy1503 111 SITFKPKQLACIIGAIGAGKTSLLHIILNELRI 143 (265)
Q Consensus 111 sl~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~ 143 (265)
+|.+++|+.+.|+||+|||||||+++|++.+.+
T Consensus 232 ~l~i~~~~~vLL~Gp~GtGKTtLarala~~l~~ 264 (806)
T 1ypw_A 232 AIGVKPPRGILLYGPPGTGKTLIARAVANETGA 264 (806)
T ss_dssp SSCCCCCCEEEECSCTTSSHHHHHHHHHHTTTC
T ss_pred hcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCC
Confidence 346899999999999999999999999998754
No 256
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=96.96 E-value=0.00041 Score=57.94 Aligned_cols=24 Identities=21% Similarity=0.541 Sum_probs=21.8
Q ss_pred CCcEEEEEcCCCChHHHHHHHHhc
Q psy1503 116 PKQLACIIGAIGAGKTSLLHIILN 139 (265)
Q Consensus 116 ~G~~~~ivG~~GsGKSTLl~~l~g 139 (265)
.+-+++|+|++||||||+.+.|..
T Consensus 3 ~~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 3 LRYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 356899999999999999999987
No 257
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=96.95 E-value=0.00029 Score=57.03 Aligned_cols=26 Identities=23% Similarity=0.222 Sum_probs=22.9
Q ss_pred cCCcEEEEEcCCCChHHHHHHHHhcC
Q psy1503 115 KPKQLACIIGAIGAGKTSLLHIILNE 140 (265)
Q Consensus 115 ~~G~~~~ivG~~GsGKSTLl~~l~g~ 140 (265)
.++..+.|+|++||||||+.+.|...
T Consensus 9 ~~~~~i~i~G~~GsGKst~~~~l~~~ 34 (180)
T 3iij_A 9 MLLPNILLTGTPGVGKTTLGKELASK 34 (180)
T ss_dssp CCCCCEEEECSTTSSHHHHHHHHHHH
T ss_pred ccCCeEEEEeCCCCCHHHHHHHHHHH
Confidence 46788999999999999999999744
No 258
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=96.94 E-value=0.00041 Score=56.71 Aligned_cols=23 Identities=35% Similarity=0.577 Sum_probs=20.7
Q ss_pred EEEEEcCCCChHHHHHHHHhcCc
Q psy1503 119 LACIIGAIGAGKTSLLHIILNEL 141 (265)
Q Consensus 119 ~~~ivG~~GsGKSTLl~~l~g~~ 141 (265)
+++|+|++||||||+.+.|...+
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l 24 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKL 24 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHHhc
Confidence 68999999999999999998743
No 259
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=96.93 E-value=0.00051 Score=56.74 Aligned_cols=27 Identities=19% Similarity=0.292 Sum_probs=23.8
Q ss_pred cCCcEEEEEcCCCChHHHHHHHHhcCc
Q psy1503 115 KPKQLACIIGAIGAGKTSLLHIILNEL 141 (265)
Q Consensus 115 ~~G~~~~ivG~~GsGKSTLl~~l~g~~ 141 (265)
.+|.+++|+|+.||||||+.+.|...+
T Consensus 8 ~~~~~I~l~G~~GsGKST~~~~L~~~l 34 (212)
T 2wwf_A 8 KKGKFIVFEGLDRSGKSTQSKLLVEYL 34 (212)
T ss_dssp BCSCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred hcCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 468899999999999999999997643
No 260
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=96.93 E-value=0.00051 Score=55.93 Aligned_cols=27 Identities=22% Similarity=0.447 Sum_probs=23.7
Q ss_pred cCCcEEEEEcCCCChHHHHHHHHhcCc
Q psy1503 115 KPKQLACIIGAIGAGKTSLLHIILNEL 141 (265)
Q Consensus 115 ~~G~~~~ivG~~GsGKSTLl~~l~g~~ 141 (265)
.++.+++|+|+.||||||+.+.|...+
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~La~~l 33 (196)
T 2c95_A 7 KKTNIIFVVGGPGSGKGTQCEKIVQKY 33 (196)
T ss_dssp TTSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 467899999999999999999997644
No 261
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=96.93 E-value=0.00051 Score=56.79 Aligned_cols=28 Identities=21% Similarity=0.274 Sum_probs=24.1
Q ss_pred EcCCcEEEEEcCCCChHHHHHHHHhcCc
Q psy1503 114 FKPKQLACIIGAIGAGKTSLLHIILNEL 141 (265)
Q Consensus 114 i~~G~~~~ivG~~GsGKSTLl~~l~g~~ 141 (265)
.++|.+++|+|+.||||||+.+.|...+
T Consensus 6 ~~~~~~I~l~G~~GsGKsT~~~~L~~~l 33 (215)
T 1nn5_A 6 ARRGALIVLEGVDRAGKSTQSRKLVEAL 33 (215)
T ss_dssp -CCCCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 4578899999999999999999998643
No 262
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=96.91 E-value=0.00052 Score=56.44 Aligned_cols=28 Identities=21% Similarity=0.315 Sum_probs=24.4
Q ss_pred CCcEEEEEcCCCChHHHHHHHHhcCcCC
Q psy1503 116 PKQLACIIGAIGAGKTSLLHIILNELRI 143 (265)
Q Consensus 116 ~G~~~~ivG~~GsGKSTLl~~l~g~~~~ 143 (265)
+|.+++|.|+.||||||+.+.|...+..
T Consensus 3 ~~~~I~i~G~~GsGKsT~~~~L~~~l~~ 30 (213)
T 2plr_A 3 KGVLIAFEGIDGSGKSSQATLLKDWIEL 30 (213)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHTT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHhh
Confidence 4678999999999999999999876654
No 263
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=96.89 E-value=0.00045 Score=59.70 Aligned_cols=24 Identities=33% Similarity=0.347 Sum_probs=21.2
Q ss_pred cEEEEEcCCCChHHHHHHHHhcCc
Q psy1503 118 QLACIIGAIGAGKTSLLHIILNEL 141 (265)
Q Consensus 118 ~~~~ivG~~GsGKSTLl~~l~g~~ 141 (265)
.+++|+||+|||||||.+.|++.+
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~~ 25 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQET 25 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHhcC
Confidence 368999999999999999998754
No 264
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=96.87 E-value=0.00084 Score=61.42 Aligned_cols=36 Identities=19% Similarity=0.349 Sum_probs=29.8
Q ss_pred CcEEEEEcCCCChHHHHHHHHhc-----------CcCCCccEEEEcC
Q psy1503 117 KQLACIIGAIGAGKTSLLHIILN-----------ELRISSGKVSLGG 152 (265)
Q Consensus 117 G~~~~ivG~~GsGKSTLl~~l~g-----------~~~~~~G~i~~~g 152 (265)
|-.++|||.+|+|||||++.|.+ -+.|..|.+.+++
T Consensus 2 ~~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p~~g~v~~~~ 48 (363)
T 1jal_A 2 GFKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPD 48 (363)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCC
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceECceEEEEecCC
Confidence 35689999999999999999998 3467778777655
No 265
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=96.86 E-value=0.001 Score=53.96 Aligned_cols=35 Identities=26% Similarity=0.502 Sum_probs=26.7
Q ss_pred EEEEEcCCCChHHHHHHHHhc-C----cCCCcc----EEEEcCe
Q psy1503 119 LACIIGAIGAGKTSLLHIILN-E----LRISSG----KVSLGGT 153 (265)
Q Consensus 119 ~~~ivG~~GsGKSTLl~~l~g-~----~~~~~G----~i~~~g~ 153 (265)
.++|+|++|+|||||++.+.+ . +.|+.+ .+.++|.
T Consensus 22 ki~ivG~~~vGKSsL~~~~~~~~~~~~~~~t~~~~~~~~~~~~~ 65 (184)
T 3ihw_A 22 KVGIVGNLSSGKSALVHRYLTGTYVQEESPEGGRFKKEIVVDGQ 65 (184)
T ss_dssp EEEEECCTTSCHHHHHHHHHHSSCCCCCCTTCEEEEEEEEETTE
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCcCCCcceEEEEEEECCE
Confidence 689999999999999976654 3 567766 5566663
No 266
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=96.86 E-value=0.00057 Score=54.69 Aligned_cols=22 Identities=23% Similarity=0.454 Sum_probs=20.3
Q ss_pred cEEEEEcCCCChHHHHHHHHhc
Q psy1503 118 QLACIIGAIGAGKTSLLHIILN 139 (265)
Q Consensus 118 ~~~~ivG~~GsGKSTLl~~l~g 139 (265)
.++.|+|++||||||+.+.|..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 4789999999999999999987
No 267
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=96.85 E-value=0.0013 Score=57.14 Aligned_cols=47 Identities=15% Similarity=0.256 Sum_probs=33.3
Q ss_pred EEEEEcCCCChHHHHHHHHhcCcCC-----------CccEEEEcCeEEEEecCCCCcc
Q psy1503 119 LACIIGAIGAGKTSLLHIILNELRI-----------SSGKVSLGGTVSYASQEPWIFA 165 (265)
Q Consensus 119 ~~~ivG~~GsGKSTLl~~l~g~~~~-----------~~G~i~~~g~i~~v~Q~~~l~~ 165 (265)
.++|+|++|||||||++.|.|...+ ..|.+.+++....+.+.|-.+.
T Consensus 5 ~i~lvG~~g~GKTTL~n~l~g~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~ 62 (271)
T 3k53_A 5 TVALVGNPNVGKTTIFNALTGLRQHVGNWPGVTVEKKEGIMEYREKEFLVVDLPGIYS 62 (271)
T ss_dssp EEEEEECSSSSHHHHHHHHHTTCEEEEECTTSSCEEEEEEEEETTEEEEEEECCCCSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCcccCCCCCeEEEeeEEEEEECCceEEEEeCCCccc
Confidence 5899999999999999999997532 1234445555555666665543
No 268
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=96.82 E-value=0.00045 Score=61.07 Aligned_cols=39 Identities=28% Similarity=0.386 Sum_probs=31.2
Q ss_pred eEEEcCCcEEEEEcCCCChHHHHHHHHhcCcCCCccEEEEc
Q psy1503 111 SITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSLG 151 (265)
Q Consensus 111 sl~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~ 151 (265)
++.++++..+.|.||+|+|||||++++.+... .+-+.++
T Consensus 43 ~~~~~~~~~vLL~Gp~GtGKT~la~ala~~~~--~~~i~v~ 81 (301)
T 3cf0_A 43 KFGMTPSKGVLFYGPPGCGKTLLAKAIANECQ--ANFISIK 81 (301)
T ss_dssp HHCCCCCSEEEEECSSSSSHHHHHHHHHHHTT--CEEEEEC
T ss_pred HcCCCCCceEEEECCCCcCHHHHHHHHHHHhC--CCEEEEE
Confidence 34578899999999999999999999998764 3444444
No 269
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=96.80 E-value=0.0015 Score=61.13 Aligned_cols=35 Identities=17% Similarity=0.261 Sum_probs=28.4
Q ss_pred ceeeceEEEcCCcEEEEEcCCCChHHHHHHHHhcC
Q psy1503 106 TLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNE 140 (265)
Q Consensus 106 ~l~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~g~ 140 (265)
.|+.+.--+++|+++.|.|++|+|||||+.-++..
T Consensus 186 ~LD~~lgGl~~G~liiIaG~pG~GKTtlal~ia~~ 220 (444)
T 3bgw_A 186 ELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKN 220 (444)
T ss_dssp HHHHHHSSBCSSCEEEEEECSSSSHHHHHHHHHHH
T ss_pred HHHhhcCCCCCCcEEEEEeCCCCChHHHHHHHHHH
Confidence 45555546899999999999999999998766553
No 270
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=96.79 E-value=0.0007 Score=54.81 Aligned_cols=25 Identities=24% Similarity=0.402 Sum_probs=21.6
Q ss_pred CcEEEEEcCCCChHHHHHHHHhcCc
Q psy1503 117 KQLACIIGAIGAGKTSLLHIILNEL 141 (265)
Q Consensus 117 G~~~~ivG~~GsGKSTLl~~l~g~~ 141 (265)
+.+++|+|++||||||+.+.|...+
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~~~ 27 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVEKY 27 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHh
Confidence 5689999999999999999986543
No 271
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=96.78 E-value=0.00061 Score=54.88 Aligned_cols=23 Identities=30% Similarity=0.583 Sum_probs=20.8
Q ss_pred EEEEEcCCCChHHHHHHHHhcCc
Q psy1503 119 LACIIGAIGAGKTSLLHIILNEL 141 (265)
Q Consensus 119 ~~~ivG~~GsGKSTLl~~l~g~~ 141 (265)
.++|+|++||||||+.+.|...+
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l 28 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDL 28 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHc
Confidence 58999999999999999998754
No 272
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=96.78 E-value=0.0003 Score=57.49 Aligned_cols=28 Identities=21% Similarity=0.433 Sum_probs=24.2
Q ss_pred EcCCcEEEEEcCCCChHHHHHHHHhcCc
Q psy1503 114 FKPKQLACIIGAIGAGKTSLLHIILNEL 141 (265)
Q Consensus 114 i~~G~~~~ivG~~GsGKSTLl~~l~g~~ 141 (265)
++.+.+++|+|+.||||||+.+.|...+
T Consensus 9 ~~~~~~I~l~G~~GsGKsT~a~~L~~~l 36 (199)
T 2bwj_A 9 LRKCKIIFIIGGPGSGKGTQCEKLVEKY 36 (199)
T ss_dssp HHHSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 4567899999999999999999997654
No 273
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=96.77 E-value=0.00052 Score=55.32 Aligned_cols=27 Identities=30% Similarity=0.441 Sum_probs=18.2
Q ss_pred cCCcEEEEEcCCCChHHHHHHHHhcCc
Q psy1503 115 KPKQLACIIGAIGAGKTSLLHIILNEL 141 (265)
Q Consensus 115 ~~G~~~~ivG~~GsGKSTLl~~l~g~~ 141 (265)
.++.++.|+|++||||||+.+.|...+
T Consensus 3 ~~~~~I~l~G~~GsGKST~a~~La~~l 29 (183)
T 2vli_A 3 MRSPIIWINGPFGVGKTHTAHTLHERL 29 (183)
T ss_dssp --CCEEEEECCC----CHHHHHHHHHS
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 357799999999999999999997543
No 274
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=96.74 E-value=0.00076 Score=54.49 Aligned_cols=24 Identities=25% Similarity=0.462 Sum_probs=21.4
Q ss_pred EEEEEcCCCChHHHHHHHHhcCcC
Q psy1503 119 LACIIGAIGAGKTSLLHIILNELR 142 (265)
Q Consensus 119 ~~~ivG~~GsGKSTLl~~l~g~~~ 142 (265)
++.|+|++||||||+.+.|...+.
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l~ 26 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEILD 26 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 689999999999999999987654
No 275
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=96.73 E-value=0.0015 Score=52.70 Aligned_cols=29 Identities=31% Similarity=0.448 Sum_probs=24.6
Q ss_pred cEEEEEcCCCChHHHHHHHHhcC----cCCCcc
Q psy1503 118 QLACIIGAIGAGKTSLLHIILNE----LRISSG 146 (265)
Q Consensus 118 ~~~~ivG~~GsGKSTLl~~l~g~----~~~~~G 146 (265)
-.++|+|++|+|||||++.+.+. +.|+.|
T Consensus 17 ~ki~ivG~~~vGKSsL~~~l~~~~~~~~~~t~g 49 (181)
T 1fzq_A 17 VRILLLGLDNAGKTTLLKQLASEDISHITPTQG 49 (181)
T ss_dssp EEEEEEESTTSSHHHHHHHHCCSCCEEEEEETT
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCcccCcCC
Confidence 46899999999999999999886 356666
No 276
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=96.73 E-value=0.0012 Score=57.38 Aligned_cols=32 Identities=13% Similarity=0.207 Sum_probs=28.2
Q ss_pred HHHHHHHHccCCCEEEEeCCCCCcCHHHHHHHHHH
Q psy1503 221 RINLARAVYKNADIYLLDDPLSAVDMHVGKHLFED 255 (265)
Q Consensus 221 RialARal~~~~~illLDEp~s~LD~~~~~~i~~~ 255 (265)
|++|||||..+|+++++|||+ |..+...+++.
T Consensus 88 ~~~la~aL~~~p~illlDEp~---D~~~~~~~l~~ 119 (261)
T 2eyu_A 88 ADALRAALREDPDVIFVGEMR---DLETVETALRA 119 (261)
T ss_dssp HHHHHHHHHHCCSEEEESCCC---SHHHHHHHHHH
T ss_pred HHHHHHHHhhCCCEEEeCCCC---CHHHHHHHHHH
Confidence 899999999999999999999 99887665543
No 277
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=96.68 E-value=0.0018 Score=50.75 Aligned_cols=22 Identities=32% Similarity=0.478 Sum_probs=20.1
Q ss_pred EEEEEcCCCChHHHHHHHHhcC
Q psy1503 119 LACIIGAIGAGKTSLLHIILNE 140 (265)
Q Consensus 119 ~~~ivG~~GsGKSTLl~~l~g~ 140 (265)
.++++|+.|+|||||++.+.+.
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (172)
T 2erx_A 5 RVAVFGAGGVGKSSLVLRFVKG 26 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999999873
No 278
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=96.67 E-value=0.00064 Score=55.58 Aligned_cols=26 Identities=19% Similarity=0.229 Sum_probs=23.0
Q ss_pred cEEEEEcCCCChHHHHHHHHhcCcCC
Q psy1503 118 QLACIIGAIGAGKTSLLHIILNELRI 143 (265)
Q Consensus 118 ~~~~ivG~~GsGKSTLl~~l~g~~~~ 143 (265)
.+++|+|++|||||||+..|++.+..
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~~l~~ 30 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVAAAVR 30 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHhhHh
Confidence 47899999999999999999987654
No 279
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=96.67 E-value=0.0011 Score=55.47 Aligned_cols=27 Identities=22% Similarity=0.286 Sum_probs=23.0
Q ss_pred cCCcEEEEEcCCCChHHHHHHHHhcCc
Q psy1503 115 KPKQLACIIGAIGAGKTSLLHIILNEL 141 (265)
Q Consensus 115 ~~G~~~~ivG~~GsGKSTLl~~l~g~~ 141 (265)
++|.++.|+|+.||||||+.+.|...+
T Consensus 2 ~~~~~I~l~G~~GsGKsT~a~~La~~l 28 (220)
T 1aky_A 2 SESIRMVLIGPPGAGKGTQAPNLQERF 28 (220)
T ss_dssp -CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 356789999999999999999997654
No 280
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=96.66 E-value=0.00095 Score=54.30 Aligned_cols=23 Identities=22% Similarity=0.440 Sum_probs=20.8
Q ss_pred EEEEEcCCCChHHHHHHHHhcCc
Q psy1503 119 LACIIGAIGAGKTSLLHIILNEL 141 (265)
Q Consensus 119 ~~~ivG~~GsGKSTLl~~l~g~~ 141 (265)
+++|.|+.||||||+.+.|...+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l 24 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYL 24 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 68999999999999999997755
No 281
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=96.62 E-value=0.0015 Score=51.09 Aligned_cols=23 Identities=26% Similarity=0.692 Sum_probs=20.7
Q ss_pred EEEEEcCCCChHHHHHHHHhcCc
Q psy1503 119 LACIIGAIGAGKTSLLHIILNEL 141 (265)
Q Consensus 119 ~~~ivG~~GsGKSTLl~~l~g~~ 141 (265)
.++|+|+.|+|||||++.+.+..
T Consensus 8 ~i~v~G~~~~GKSsli~~l~~~~ 30 (170)
T 1z0j_A 8 KVCLLGDTGVGKSSIMWRFVEDS 30 (170)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 57999999999999999998764
No 282
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=96.61 E-value=0.0014 Score=51.21 Aligned_cols=23 Identities=17% Similarity=0.353 Sum_probs=20.4
Q ss_pred EEEEEcCCCChHHHHHHHHhcCc
Q psy1503 119 LACIIGAIGAGKTSLLHIILNEL 141 (265)
Q Consensus 119 ~~~ivG~~GsGKSTLl~~l~g~~ 141 (265)
.++|+|+.|+|||||++.+.+..
T Consensus 7 ~i~v~G~~~~GKssl~~~l~~~~ 29 (168)
T 1z2a_A 7 KMVVVGNGAVGKSSMIQRYCKGI 29 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 57999999999999999998743
No 283
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=96.61 E-value=0.0011 Score=55.67 Aligned_cols=27 Identities=30% Similarity=0.356 Sum_probs=22.2
Q ss_pred cCCcEEEEEcCCCChHHHHHHHHhcCc
Q psy1503 115 KPKQLACIIGAIGAGKTSLLHIILNEL 141 (265)
Q Consensus 115 ~~G~~~~ivG~~GsGKSTLl~~l~g~~ 141 (265)
.++.+++|+|+.||||||+.+.|...+
T Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~La~~l 31 (227)
T 1zd8_A 5 ARLLRAVIMGAPGSGKGTVSSRITTHF 31 (227)
T ss_dssp --CCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred ccCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 456789999999999999999997543
No 284
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=96.59 E-value=0.0011 Score=53.58 Aligned_cols=25 Identities=32% Similarity=0.416 Sum_probs=22.2
Q ss_pred cEEEEEcCCCChHHHHHHHHhcCcC
Q psy1503 118 QLACIIGAIGAGKTSLLHIILNELR 142 (265)
Q Consensus 118 ~~~~ivG~~GsGKSTLl~~l~g~~~ 142 (265)
-.++|+|++|+|||||++.+.+...
T Consensus 49 ~~i~vvG~~g~GKSsll~~l~~~~~ 73 (193)
T 2ged_A 49 PSIIIAGPQNSGKTSLLTLLTTDSV 73 (193)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHSSC
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCC
Confidence 4789999999999999999998653
No 285
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=96.58 E-value=0.0014 Score=53.97 Aligned_cols=26 Identities=23% Similarity=0.339 Sum_probs=22.4
Q ss_pred CCcEEEEEcCCCChHHHHHHHHhcCc
Q psy1503 116 PKQLACIIGAIGAGKTSLLHIILNEL 141 (265)
Q Consensus 116 ~G~~~~ivG~~GsGKSTLl~~l~g~~ 141 (265)
.+.+++|+|+.||||||+.+.|...+
T Consensus 19 ~~~~I~l~G~~GsGKST~a~~La~~l 44 (201)
T 2cdn_A 19 SHMRVLLLGPPGAGKGTQAVKLAEKL 44 (201)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 45689999999999999999997644
No 286
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=96.56 E-value=0.00098 Score=58.34 Aligned_cols=31 Identities=23% Similarity=0.276 Sum_probs=27.5
Q ss_pred cEEEEEcCCCChHHHHHHHHhcCcCCCccEE
Q psy1503 118 QLACIIGAIGAGKTSLLHIILNELRISSGKV 148 (265)
Q Consensus 118 ~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i 148 (265)
..+.|+||+|+||||++++|.+...+..+.+
T Consensus 48 ~~~ll~G~~GtGKt~la~~la~~~~~~~~~~ 78 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAKTLAATLFDTEEAM 78 (311)
T ss_dssp EEEEEESCSSSSHHHHHHHHHHHHHSCGGGE
T ss_pred eEEEEECCCCcCHHHHHHHHHHHHcCCCcce
Confidence 5799999999999999999999988777654
No 287
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=96.56 E-value=0.0012 Score=51.27 Aligned_cols=23 Identities=26% Similarity=0.442 Sum_probs=20.4
Q ss_pred EEEEEcCCCChHHHHHHHHhcCc
Q psy1503 119 LACIIGAIGAGKTSLLHIILNEL 141 (265)
Q Consensus 119 ~~~ivG~~GsGKSTLl~~l~g~~ 141 (265)
.++++|+.|+|||||++.+.+..
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~~ 27 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQNH 27 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 48999999999999999998653
No 288
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=96.56 E-value=0.0011 Score=51.86 Aligned_cols=24 Identities=29% Similarity=0.376 Sum_probs=20.3
Q ss_pred EEEEEcCCCChHHHHHHHHhcCcC
Q psy1503 119 LACIIGAIGAGKTSLLHIILNELR 142 (265)
Q Consensus 119 ~~~ivG~~GsGKSTLl~~l~g~~~ 142 (265)
.++|+|++|+|||||++.+.+...
T Consensus 4 ki~~vG~~~~GKSsli~~l~~~~~ 27 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFGGVED 27 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHCCC--
T ss_pred EEEEECCCCCCHHHHHHHHcCccc
Confidence 589999999999999999987543
No 289
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=96.55 E-value=0.0012 Score=54.25 Aligned_cols=23 Identities=26% Similarity=0.395 Sum_probs=20.9
Q ss_pred EEEEEcCCCChHHHHHHHHhcCc
Q psy1503 119 LACIIGAIGAGKTSLLHIILNEL 141 (265)
Q Consensus 119 ~~~ivG~~GsGKSTLl~~l~g~~ 141 (265)
+++|.|++||||||+.+.|...+
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~l 26 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAAL 26 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhc
Confidence 79999999999999999997743
No 290
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=96.55 E-value=0.0013 Score=53.97 Aligned_cols=26 Identities=19% Similarity=0.404 Sum_probs=22.2
Q ss_pred CCcEEEEEcCCCChHHHHHHHHhcCc
Q psy1503 116 PKQLACIIGAIGAGKTSLLHIILNEL 141 (265)
Q Consensus 116 ~G~~~~ivG~~GsGKSTLl~~l~g~~ 141 (265)
...+++|+|+.||||||+.+.|...+
T Consensus 14 ~~~~I~l~G~~GsGKsT~~~~L~~~~ 39 (203)
T 1ukz_A 14 QVSVIFVLGGPGAGKGTQCEKLVKDY 39 (203)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 44689999999999999999997544
No 291
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=96.55 E-value=0.0013 Score=51.24 Aligned_cols=22 Identities=23% Similarity=0.418 Sum_probs=19.8
Q ss_pred EEEEEcCCCChHHHHHHHHhcC
Q psy1503 119 LACIIGAIGAGKTSLLHIILNE 140 (265)
Q Consensus 119 ~~~ivG~~GsGKSTLl~~l~g~ 140 (265)
.++|+|+.|+|||||++.+.+.
T Consensus 5 ~i~v~G~~~~GKSsli~~l~~~ 26 (167)
T 1kao_A 5 KVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999998754
No 292
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=96.54 E-value=0.0014 Score=51.75 Aligned_cols=23 Identities=30% Similarity=0.488 Sum_probs=20.5
Q ss_pred EEEEEcCCCChHHHHHHHHhcCc
Q psy1503 119 LACIIGAIGAGKTSLLHIILNEL 141 (265)
Q Consensus 119 ~~~ivG~~GsGKSTLl~~l~g~~ 141 (265)
.++|+|++|+|||||++.+.+..
T Consensus 6 ki~i~G~~~vGKSsl~~~l~~~~ 28 (175)
T 2nzj_A 6 RVVLLGDPGVGKTSLASLFAGKQ 28 (175)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC-
T ss_pred EEEEECCCCccHHHHHHHHhcCC
Confidence 58999999999999999998864
No 293
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=96.52 E-value=0.0013 Score=55.17 Aligned_cols=26 Identities=23% Similarity=0.236 Sum_probs=22.2
Q ss_pred CCcEEEEEcCCCChHHHHHHHHhcCc
Q psy1503 116 PKQLACIIGAIGAGKTSLLHIILNEL 141 (265)
Q Consensus 116 ~G~~~~ivG~~GsGKSTLl~~l~g~~ 141 (265)
.+.++.|+|++||||||+.+.|...+
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La~~l 29 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIKTKY 29 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 45689999999999999999997543
No 294
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=96.52 E-value=0.0013 Score=54.56 Aligned_cols=23 Identities=26% Similarity=0.408 Sum_probs=19.9
Q ss_pred EEEEEcCCCChHHHHHHHHhcCc
Q psy1503 119 LACIIGAIGAGKTSLLHIILNEL 141 (265)
Q Consensus 119 ~~~ivG~~GsGKSTLl~~l~g~~ 141 (265)
.++|+|++||||||+.+.|...+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999996543
No 295
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=96.51 E-value=0.0018 Score=51.36 Aligned_cols=25 Identities=32% Similarity=0.521 Sum_probs=22.0
Q ss_pred CCcEEEEEcCCCChHHHHHHHHhcC
Q psy1503 116 PKQLACIIGAIGAGKTSLLHIILNE 140 (265)
Q Consensus 116 ~G~~~~ivG~~GsGKSTLl~~l~g~ 140 (265)
+.-.++|+|++|+|||||++.+.+.
T Consensus 7 ~~~~i~v~G~~~~GKssl~~~l~~~ 31 (178)
T 2lkc_A 7 RPPVVTIMGHVDHGKTTLLDAIRHS 31 (178)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4567999999999999999999874
No 296
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=96.51 E-value=0.0014 Score=51.00 Aligned_cols=23 Identities=30% Similarity=0.492 Sum_probs=20.7
Q ss_pred EEEEEcCCCChHHHHHHHHhcCc
Q psy1503 119 LACIIGAIGAGKTSLLHIILNEL 141 (265)
Q Consensus 119 ~~~ivG~~GsGKSTLl~~l~g~~ 141 (265)
.++++|+.|+|||||++.+.+..
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~~ 25 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLFNRLLKKR 25 (161)
T ss_dssp EEEEECCTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57999999999999999998764
No 297
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=96.51 E-value=0.0017 Score=58.64 Aligned_cols=47 Identities=23% Similarity=0.362 Sum_probs=33.3
Q ss_pred EEcCCcEEEEEcCCCChHHHHHHHHhcC--cCCCccEEEEcCeEEEEecCC
Q psy1503 113 TFKPKQLACIIGAIGAGKTSLLHIILNE--LRISSGKVSLGGTVSYASQEP 161 (265)
Q Consensus 113 ~i~~G~~~~ivG~~GsGKSTLl~~l~g~--~~~~~G~i~~~g~i~~v~Q~~ 161 (265)
-+++|+++.|.||+|||||||+..++.. .++..|. .++.+.|+.-+.
T Consensus 118 Gl~~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg--~~~~vlyi~~E~ 166 (343)
T 1v5w_A 118 GIESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGY--PGGKIIFIDTEN 166 (343)
T ss_dssp SBCSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTB--CCCEEEEEESSS
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHHhcccccCC--CCCeEEEEECCC
Confidence 5889999999999999999999988774 3222111 123466766554
No 298
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=96.51 E-value=0.0014 Score=53.06 Aligned_cols=23 Identities=30% Similarity=0.381 Sum_probs=20.7
Q ss_pred EEEEEcCCCChHHHHHHHHhcCc
Q psy1503 119 LACIIGAIGAGKTSLLHIILNEL 141 (265)
Q Consensus 119 ~~~ivG~~GsGKSTLl~~l~g~~ 141 (265)
+++|+|+.||||||+.+.|...+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l 24 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYL 24 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 68999999999999999997754
No 299
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=96.51 E-value=0.0022 Score=57.45 Aligned_cols=34 Identities=21% Similarity=0.231 Sum_probs=29.9
Q ss_pred cceeeceEEEcCCcEEEEEcCCCChHHHHHHHHhc
Q psy1503 105 LTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILN 139 (265)
Q Consensus 105 ~~l~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~g 139 (265)
..++...+.+ .|.-++|+|+||+||||+...+.+
T Consensus 133 ~~~H~~~v~~-~g~~vl~~G~sG~GKSt~a~~l~~ 166 (314)
T 1ko7_A 133 TSLHGVLVDV-YGVGVLITGDSGIGKSETALELIK 166 (314)
T ss_dssp EEEESEEEEE-TTEEEEEEESTTSSHHHHHHHHHH
T ss_pred eeeeEEEEEE-CCEEEEEEeCCCCCHHHHHHHHHh
Confidence 4577777777 789999999999999999998887
No 300
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=96.49 E-value=0.0014 Score=51.05 Aligned_cols=22 Identities=23% Similarity=0.437 Sum_probs=19.9
Q ss_pred EEEEEcCCCChHHHHHHHHhcC
Q psy1503 119 LACIIGAIGAGKTSLLHIILNE 140 (265)
Q Consensus 119 ~~~ivG~~GsGKSTLl~~l~g~ 140 (265)
.++++|+.|+|||||++.+.+.
T Consensus 6 ~i~v~G~~~~GKssl~~~l~~~ 27 (168)
T 1u8z_A 6 KVIMVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999999864
No 301
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=96.49 E-value=0.0014 Score=51.40 Aligned_cols=23 Identities=30% Similarity=0.478 Sum_probs=20.4
Q ss_pred EEEEEcCCCChHHHHHHHHhcCc
Q psy1503 119 LACIIGAIGAGKTSLLHIILNEL 141 (265)
Q Consensus 119 ~~~ivG~~GsGKSTLl~~l~g~~ 141 (265)
.++|+|+.|+|||||++.+.+..
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1g16_A 5 KILLIGDSGVGKSCLLVRFVEDK 27 (170)
T ss_dssp EEEEEESTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHhCC
Confidence 47999999999999999998654
No 302
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=96.49 E-value=0.0015 Score=52.79 Aligned_cols=25 Identities=20% Similarity=0.449 Sum_probs=21.5
Q ss_pred CcEEEEEcCCCChHHHHHHHHhcCc
Q psy1503 117 KQLACIIGAIGAGKTSLLHIILNEL 141 (265)
Q Consensus 117 G~~~~ivG~~GsGKSTLl~~l~g~~ 141 (265)
+.+++|+|+.||||||+.+.|...+
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~l 30 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRDF 30 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHh
Confidence 3589999999999999999997543
No 303
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=96.49 E-value=0.0015 Score=51.25 Aligned_cols=23 Identities=22% Similarity=0.302 Sum_probs=19.9
Q ss_pred EEEEEcCCCChHHHHHHHHhcCc
Q psy1503 119 LACIIGAIGAGKTSLLHIILNEL 141 (265)
Q Consensus 119 ~~~ivG~~GsGKSTLl~~l~g~~ 141 (265)
.++|+|++|+|||||++.+.+..
T Consensus 4 ki~ivG~~~~GKSsli~~l~~~~ 26 (169)
T 3q85_A 4 KVMLVGESGVGKSTLAGTFGGLQ 26 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHCC-
T ss_pred EEEEECCCCCCHHHHHHHHHhcc
Confidence 47999999999999999998644
No 304
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=96.48 E-value=0.0014 Score=56.20 Aligned_cols=23 Identities=30% Similarity=0.433 Sum_probs=21.2
Q ss_pred EEEEEcCCCChHHHHHHHHhcCc
Q psy1503 119 LACIIGAIGAGKTSLLHIILNEL 141 (265)
Q Consensus 119 ~~~ivG~~GsGKSTLl~~l~g~~ 141 (265)
.++|+|++|+|||||++.|+|.-
T Consensus 23 ~I~lvG~~g~GKSSlin~l~~~~ 45 (247)
T 3lxw_A 23 RLILVGRTGAGKSATGNSILGQR 45 (247)
T ss_dssp EEEEESSTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 58999999999999999999865
No 305
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=96.48 E-value=0.0047 Score=53.39 Aligned_cols=46 Identities=26% Similarity=0.415 Sum_probs=31.6
Q ss_pred EEEEEcCCCChHHHHHHHHhcCcC-----------CCccEEEEcCeEEEEecCCCCc
Q psy1503 119 LACIIGAIGAGKTSLLHIILNELR-----------ISSGKVSLGGTVSYASQEPWIF 164 (265)
Q Consensus 119 ~~~ivG~~GsGKSTLl~~l~g~~~-----------~~~G~i~~~g~i~~v~Q~~~l~ 164 (265)
.++++|++|||||||++.+.|... ...|.+.+++.--.+-..|-.+
T Consensus 3 kI~lvG~~n~GKSTL~n~L~g~~~~v~~~pg~Tv~~~~~~~~~~~~~~~lvDtpG~~ 59 (256)
T 3iby_A 3 HALLIGNPNCGKTTLFNALTNANQRVGNWPGVTVEKKTGEFLLGEHLIEITDLPGVY 59 (256)
T ss_dssp EEEEEESTTSSHHHHHHHHHTTSEEEEECTTSSSEEEEEEEEETTEEEEEEECCCCS
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCCccCCCCceEEEEEEEEEECCeEEEEEeCCCcc
Confidence 689999999999999999999742 1234555555433344445444
No 306
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=96.48 E-value=0.002 Score=50.33 Aligned_cols=22 Identities=23% Similarity=0.401 Sum_probs=19.9
Q ss_pred EEEEEcCCCChHHHHHHHHhcC
Q psy1503 119 LACIIGAIGAGKTSLLHIILNE 140 (265)
Q Consensus 119 ~~~ivG~~GsGKSTLl~~l~g~ 140 (265)
.++|+|+.|+|||||++.+.+.
T Consensus 5 ki~v~G~~~~GKssli~~l~~~ 26 (167)
T 1c1y_A 5 KLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999999864
No 307
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=96.47 E-value=0.0014 Score=52.26 Aligned_cols=24 Identities=25% Similarity=0.383 Sum_probs=20.9
Q ss_pred cEEEEEcCCCChHHHHHHHHhcCc
Q psy1503 118 QLACIIGAIGAGKTSLLHIILNEL 141 (265)
Q Consensus 118 ~~~~ivG~~GsGKSTLl~~l~g~~ 141 (265)
.+++|+|++||||||+.+.|...+
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~l 26 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARAL 26 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh
Confidence 468999999999999999997643
No 308
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=96.47 E-value=0.0014 Score=52.94 Aligned_cols=25 Identities=20% Similarity=0.357 Sum_probs=21.6
Q ss_pred CcEEEEEcCCCChHHHHHHHHhcCc
Q psy1503 117 KQLACIIGAIGAGKTSLLHIILNEL 141 (265)
Q Consensus 117 G~~~~ivG~~GsGKSTLl~~l~g~~ 141 (265)
--.++|+|+.|+|||||++.+.+..
T Consensus 23 ~~~i~v~G~~~~GKSsli~~l~~~~ 47 (195)
T 1svi_A 23 LPEIALAGRSNVGKSSFINSLINRK 47 (195)
T ss_dssp CCEEEEEEBTTSSHHHHHHHHHTC-
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3568999999999999999998863
No 309
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=96.46 E-value=0.002 Score=51.09 Aligned_cols=23 Identities=43% Similarity=0.657 Sum_probs=20.4
Q ss_pred EEEEEcCCCChHHHHHHHHhcCc
Q psy1503 119 LACIIGAIGAGKTSLLHIILNEL 141 (265)
Q Consensus 119 ~~~ivG~~GsGKSTLl~~l~g~~ 141 (265)
.++|+|+.|+|||||++.+.+..
T Consensus 10 ~i~v~G~~~~GKSsli~~l~~~~ 32 (182)
T 1ky3_A 10 KVIILGDSGVGKTSLMHRYVNDK 32 (182)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 58999999999999999987744
No 310
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=96.46 E-value=0.0014 Score=52.59 Aligned_cols=24 Identities=29% Similarity=0.479 Sum_probs=21.5
Q ss_pred cEEEEEcCCCChHHHHHHHHhcCc
Q psy1503 118 QLACIIGAIGAGKTSLLHIILNEL 141 (265)
Q Consensus 118 ~~~~ivG~~GsGKSTLl~~l~g~~ 141 (265)
-.++|+|+.|+|||||++.+.+..
T Consensus 24 ~~i~v~G~~~~GKSsli~~l~~~~ 47 (195)
T 3pqc_A 24 GEVAFVGRSNVGKSSLLNALFNRK 47 (195)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHTSC
T ss_pred eEEEEECCCCCCHHHHHHHHHcCc
Confidence 378999999999999999998864
No 311
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=96.46 E-value=0.002 Score=50.40 Aligned_cols=23 Identities=17% Similarity=0.336 Sum_probs=20.1
Q ss_pred EEEEEcCCCChHHHHHHHHhcCc
Q psy1503 119 LACIIGAIGAGKTSLLHIILNEL 141 (265)
Q Consensus 119 ~~~ivG~~GsGKSTLl~~l~g~~ 141 (265)
.++++|+.|+|||||++.+.+..
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIVLRFVSND 27 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 48999999999999999997643
No 312
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=96.46 E-value=0.0014 Score=51.82 Aligned_cols=23 Identities=39% Similarity=0.482 Sum_probs=20.6
Q ss_pred EEEEEcCCCChHHHHHHHHhcCc
Q psy1503 119 LACIIGAIGAGKTSLLHIILNEL 141 (265)
Q Consensus 119 ~~~ivG~~GsGKSTLl~~l~g~~ 141 (265)
.++|+|+.|+|||||++.+.+..
T Consensus 11 ~i~v~G~~~~GKssl~~~l~~~~ 33 (181)
T 3tw8_B 11 KLLIIGDSGVGKSSLLLRFADNT 33 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHCSCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 57999999999999999998753
No 313
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=96.45 E-value=0.0017 Score=51.76 Aligned_cols=24 Identities=33% Similarity=0.414 Sum_probs=20.9
Q ss_pred CcEEEEEcCCCChHHHHHHHHhcC
Q psy1503 117 KQLACIIGAIGAGKTSLLHIILNE 140 (265)
Q Consensus 117 G~~~~ivG~~GsGKSTLl~~l~g~ 140 (265)
-+.++|+|+.||||||+.+.|...
T Consensus 7 ~~~i~l~G~~GsGKSTva~~La~~ 30 (168)
T 1zuh_A 7 MQHLVLIGFMGSGKSSLAQELGLA 30 (168)
T ss_dssp -CEEEEESCTTSSHHHHHHHHHHH
T ss_pred cceEEEECCCCCCHHHHHHHHHHH
Confidence 368999999999999999999664
No 314
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=96.45 E-value=0.0021 Score=50.46 Aligned_cols=22 Identities=27% Similarity=0.295 Sum_probs=20.1
Q ss_pred EEEEEcCCCChHHHHHHHHhcC
Q psy1503 119 LACIIGAIGAGKTSLLHIILNE 140 (265)
Q Consensus 119 ~~~ivG~~GsGKSTLl~~l~g~ 140 (265)
.++|+|++|+|||||++.+.+.
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 8 KVVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 5899999999999999999865
No 315
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=96.45 E-value=0.0014 Score=52.98 Aligned_cols=24 Identities=25% Similarity=0.450 Sum_probs=20.7
Q ss_pred cEEEEEcCCCChHHHHHHHHhcCc
Q psy1503 118 QLACIIGAIGAGKTSLLHIILNEL 141 (265)
Q Consensus 118 ~~~~ivG~~GsGKSTLl~~l~g~~ 141 (265)
.+++|+|++||||||+.+.|...+
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~l 26 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKAL 26 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHc
Confidence 468999999999999999997643
No 316
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=96.45 E-value=0.0017 Score=56.18 Aligned_cols=26 Identities=19% Similarity=0.247 Sum_probs=22.4
Q ss_pred cCCcEEEEEcCCCChHHHHHHHHhcC
Q psy1503 115 KPKQLACIIGAIGAGKTSLLHIILNE 140 (265)
Q Consensus 115 ~~G~~~~ivG~~GsGKSTLl~~l~g~ 140 (265)
.++.++.|+|++||||||+.+.|...
T Consensus 2 ~~~~lIvl~G~pGSGKSTla~~La~~ 27 (260)
T 3a4m_A 2 GDIMLIILTGLPGVGKSTFSKNLAKI 27 (260)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCEEEEEEcCCCCCHHHHHHHHHHH
Confidence 35678999999999999999999764
No 317
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=96.45 E-value=0.0016 Score=51.60 Aligned_cols=22 Identities=27% Similarity=0.495 Sum_probs=19.9
Q ss_pred EEEEEcCCCChHHHHHHHHhcC
Q psy1503 119 LACIIGAIGAGKTSLLHIILNE 140 (265)
Q Consensus 119 ~~~ivG~~GsGKSTLl~~l~g~ 140 (265)
.++|+|+.|+|||||++.+.+.
T Consensus 9 ~i~v~G~~~~GKSsli~~l~~~ 30 (177)
T 1wms_A 9 KVILLGDGGVGKSSLMNRYVTN 30 (177)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5799999999999999999864
No 318
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=96.44 E-value=0.0015 Score=51.64 Aligned_cols=22 Identities=23% Similarity=0.424 Sum_probs=20.2
Q ss_pred EEEEEcCCCChHHHHHHHHhcC
Q psy1503 119 LACIIGAIGAGKTSLLHIILNE 140 (265)
Q Consensus 119 ~~~ivG~~GsGKSTLl~~l~g~ 140 (265)
.++|+|+.|+|||||++.+.+.
T Consensus 11 ~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 11 KLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999999875
No 319
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=96.43 E-value=0.0016 Score=54.09 Aligned_cols=23 Identities=26% Similarity=0.335 Sum_probs=20.1
Q ss_pred EEEEEcCCCChHHHHHHHHhcCc
Q psy1503 119 LACIIGAIGAGKTSLLHIILNEL 141 (265)
Q Consensus 119 ~~~ivG~~GsGKSTLl~~l~g~~ 141 (265)
.++|+|++||||||+.+.|...+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999996544
No 320
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=96.43 E-value=0.0017 Score=53.37 Aligned_cols=28 Identities=39% Similarity=0.482 Sum_probs=24.4
Q ss_pred cEEEEEcCCCChHHHHHHHHhcCcCCCc
Q psy1503 118 QLACIIGAIGAGKTSLLHIILNELRISS 145 (265)
Q Consensus 118 ~~~~ivG~~GsGKSTLl~~l~g~~~~~~ 145 (265)
..+.|.||+|+|||||++++........
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~~~~~ 82 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANELAKRN 82 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHTTT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcC
Confidence 6899999999999999999998776543
No 321
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=96.42 E-value=0.0018 Score=51.44 Aligned_cols=22 Identities=18% Similarity=0.353 Sum_probs=19.8
Q ss_pred EEEEEcCCCChHHHHHHHHhcC
Q psy1503 119 LACIIGAIGAGKTSLLHIILNE 140 (265)
Q Consensus 119 ~~~ivG~~GsGKSTLl~~l~g~ 140 (265)
.++|+|++||||||+.+.|...
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~ 23 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRS 23 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999764
No 322
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=96.40 E-value=0.0017 Score=52.21 Aligned_cols=22 Identities=18% Similarity=0.428 Sum_probs=20.5
Q ss_pred EEEEEcCCCChHHHHHHHHhcC
Q psy1503 119 LACIIGAIGAGKTSLLHIILNE 140 (265)
Q Consensus 119 ~~~ivG~~GsGKSTLl~~l~g~ 140 (265)
.++|+|+.|+|||||++.+++.
T Consensus 9 ki~v~G~~~~GKSsli~~l~~~ 30 (208)
T 3clv_A 9 KTVLLGESSVGKSSIVLRLTKD 30 (208)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999999886
No 323
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=96.38 E-value=0.0014 Score=54.58 Aligned_cols=29 Identities=21% Similarity=0.273 Sum_probs=25.2
Q ss_pred CCcEEEEEcCCCChHHHHHHHHhcCcCCC
Q psy1503 116 PKQLACIIGAIGAGKTSLLHIILNELRIS 144 (265)
Q Consensus 116 ~G~~~~ivG~~GsGKSTLl~~l~g~~~~~ 144 (265)
.+..+.|+||+|+|||||++.+.......
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l~~~~~~~ 79 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAACARANEL 79 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHHHHHT
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 67899999999999999999998876543
No 324
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=96.37 E-value=0.0018 Score=50.57 Aligned_cols=22 Identities=23% Similarity=0.388 Sum_probs=19.8
Q ss_pred EEEEEcCCCChHHHHHHHHhcC
Q psy1503 119 LACIIGAIGAGKTSLLHIILNE 140 (265)
Q Consensus 119 ~~~ivG~~GsGKSTLl~~l~g~ 140 (265)
.++|+|+.|+|||||++.+.+.
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1r2q_A 8 KLVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5799999999999999999863
No 325
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=96.37 E-value=0.0012 Score=58.89 Aligned_cols=31 Identities=26% Similarity=0.420 Sum_probs=26.8
Q ss_pred cCCcEEEEEcCCCChHHHHHHHHhcCcCCCc
Q psy1503 115 KPKQLACIIGAIGAGKTSLLHIILNELRISS 145 (265)
Q Consensus 115 ~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~ 145 (265)
..+..+.|+||+|+|||||++.+.+...+..
T Consensus 43 ~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~ 73 (386)
T 2qby_A 43 EKPNNIFIYGLTGTGKTAVVKFVLSKLHKKF 73 (386)
T ss_dssp CCCCCEEEEECTTSSHHHHHHHHHHHHHHHT
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHHHHh
Confidence 4578999999999999999999999876543
No 326
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=96.36 E-value=0.0023 Score=51.20 Aligned_cols=23 Identities=17% Similarity=0.258 Sum_probs=20.7
Q ss_pred EEEEEcCCCChHHHHHHHHhcCc
Q psy1503 119 LACIIGAIGAGKTSLLHIILNEL 141 (265)
Q Consensus 119 ~~~ivG~~GsGKSTLl~~l~g~~ 141 (265)
.++|+|++|+|||||++.+.+..
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~~ 25 (190)
T 2cxx_A 3 TIIFAGRSNVGKSTLIYRLTGKK 25 (190)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSCC
T ss_pred EEEEECCCCCCHHHHHHHHhCcC
Confidence 47999999999999999998864
No 327
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=96.36 E-value=0.002 Score=55.08 Aligned_cols=27 Identities=26% Similarity=0.302 Sum_probs=23.2
Q ss_pred cCCcEEEEEcCCCChHHHHHHHHhcCc
Q psy1503 115 KPKQLACIIGAIGAGKTSLLHIILNEL 141 (265)
Q Consensus 115 ~~G~~~~ivG~~GsGKSTLl~~l~g~~ 141 (265)
+++-+++|+||+||||||+.+.|...+
T Consensus 27 ~~~~~I~l~G~~GsGKsT~a~~L~~~~ 53 (243)
T 3tlx_A 27 KPDGRYIFLGAPGSGKGTQSLNLKKSH 53 (243)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 366789999999999999999997544
No 328
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=96.36 E-value=0.0019 Score=56.55 Aligned_cols=23 Identities=35% Similarity=0.492 Sum_probs=21.2
Q ss_pred EEEEEcCCCChHHHHHHHHhcCc
Q psy1503 119 LACIIGAIGAGKTSLLHIILNEL 141 (265)
Q Consensus 119 ~~~ivG~~GsGKSTLl~~l~g~~ 141 (265)
.++++|++|||||||++.+.|..
T Consensus 5 kI~lvG~~nvGKSTL~n~L~g~~ 27 (272)
T 3b1v_A 5 EIALIGNPNSGKTSLFNLITGHN 27 (272)
T ss_dssp EEEEECCTTSSHHHHHHHHHCCC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 68999999999999999999953
No 329
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=96.35 E-value=0.0019 Score=53.56 Aligned_cols=23 Identities=30% Similarity=0.596 Sum_probs=20.8
Q ss_pred cEEEEEcCCCChHHHHHHHHhcC
Q psy1503 118 QLACIIGAIGAGKTSLLHIILNE 140 (265)
Q Consensus 118 ~~~~ivG~~GsGKSTLl~~l~g~ 140 (265)
.+++|+|+.||||||+.+.|...
T Consensus 13 ~iIgltG~~GSGKSTva~~L~~~ 35 (192)
T 2grj_A 13 MVIGVTGKIGTGKSTVCEILKNK 35 (192)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 57899999999999999999764
No 330
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=96.34 E-value=0.002 Score=51.73 Aligned_cols=24 Identities=25% Similarity=0.216 Sum_probs=21.6
Q ss_pred EEEEEcCCCChHHHHHHHHhcCcC
Q psy1503 119 LACIIGAIGAGKTSLLHIILNELR 142 (265)
Q Consensus 119 ~~~ivG~~GsGKSTLl~~l~g~~~ 142 (265)
.++|+|+.|+|||||++.+.|...
T Consensus 16 ki~vvG~~~~GKssL~~~l~~~~~ 39 (198)
T 3t1o_A 16 KIVYYGPGLSGKTTNLKWIYSKVP 39 (198)
T ss_dssp EEEEECSTTSSHHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHHhhcc
Confidence 579999999999999999998654
No 331
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=96.33 E-value=0.0019 Score=51.62 Aligned_cols=22 Identities=32% Similarity=0.348 Sum_probs=20.0
Q ss_pred EEEEEcCCCChHHHHHHHHhcC
Q psy1503 119 LACIIGAIGAGKTSLLHIILNE 140 (265)
Q Consensus 119 ~~~ivG~~GsGKSTLl~~l~g~ 140 (265)
.++|+|+.|+|||||++.+.+.
T Consensus 13 ki~v~G~~~~GKSsli~~l~~~ 34 (195)
T 3bc1_A 13 KFLALGDSGVGKTSVLYQYTDG 34 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999863
No 332
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=96.31 E-value=0.0023 Score=50.66 Aligned_cols=23 Identities=30% Similarity=0.364 Sum_probs=20.4
Q ss_pred EEEEEcCCCChHHHHHHHHhcCc
Q psy1503 119 LACIIGAIGAGKTSLLHIILNEL 141 (265)
Q Consensus 119 ~~~ivG~~GsGKSTLl~~l~g~~ 141 (265)
.++|+|+.|+|||||++.+.+..
T Consensus 8 ki~v~G~~~~GKssl~~~l~~~~ 30 (178)
T 2hxs_A 8 KIVVLGDGASGKTSLTTCFAQET 30 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHGGG
T ss_pred EEEEECcCCCCHHHHHHHHHhCc
Confidence 58999999999999999998643
No 333
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=96.31 E-value=0.0027 Score=50.64 Aligned_cols=23 Identities=26% Similarity=0.452 Sum_probs=20.4
Q ss_pred EEEEEcCCCChHHHHHHHHhcCc
Q psy1503 119 LACIIGAIGAGKTSLLHIILNEL 141 (265)
Q Consensus 119 ~~~ivG~~GsGKSTLl~~l~g~~ 141 (265)
.++|+|+.|+|||||++.+.+..
T Consensus 6 ki~v~G~~~~GKSsli~~l~~~~ 28 (189)
T 4dsu_A 6 KLVVVGADGVGKSALTIQLIQNH 28 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 58999999999999999998643
No 334
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=96.30 E-value=0.0021 Score=50.45 Aligned_cols=22 Identities=36% Similarity=0.409 Sum_probs=20.0
Q ss_pred cEEEEEcCCCChHHHHHHHHhc
Q psy1503 118 QLACIIGAIGAGKTSLLHIILN 139 (265)
Q Consensus 118 ~~~~ivG~~GsGKSTLl~~l~g 139 (265)
-.++|+|+.|+|||||++.+.+
T Consensus 8 ~~i~v~G~~~~GKssl~~~l~~ 29 (171)
T 1upt_A 8 MRILILGLDGAGKTTILYRLQV 29 (171)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhc
Confidence 4689999999999999999976
No 335
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=96.30 E-value=0.0021 Score=55.15 Aligned_cols=23 Identities=26% Similarity=0.329 Sum_probs=20.6
Q ss_pred cEEEEEcCCCChHHHHHHHHhcC
Q psy1503 118 QLACIIGAIGAGKTSLLHIILNE 140 (265)
Q Consensus 118 ~~~~ivG~~GsGKSTLl~~l~g~ 140 (265)
-+++|.|++||||||+.+.|...
T Consensus 23 ~iI~I~G~~GSGKST~a~~L~~~ 45 (252)
T 1uj2_A 23 FLIGVSGGTASGKSSVCAKIVQL 45 (252)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999999663
No 336
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=96.30 E-value=0.002 Score=52.02 Aligned_cols=22 Identities=36% Similarity=0.543 Sum_probs=20.1
Q ss_pred EEEEEcCCCChHHHHHHHHhcC
Q psy1503 119 LACIIGAIGAGKTSLLHIILNE 140 (265)
Q Consensus 119 ~~~ivG~~GsGKSTLl~~l~g~ 140 (265)
.++|+|++|+|||||++.+.+.
T Consensus 27 ki~v~G~~~~GKSsLi~~l~~~ 48 (193)
T 2oil_A 27 KVVLIGESGVGKTNLLSRFTRN 48 (193)
T ss_dssp EEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 5899999999999999999874
No 337
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=96.30 E-value=0.0019 Score=56.17 Aligned_cols=23 Identities=22% Similarity=0.431 Sum_probs=20.3
Q ss_pred EEEEEcCCCChHHHHHHHHhcCc
Q psy1503 119 LACIIGAIGAGKTSLLHIILNEL 141 (265)
Q Consensus 119 ~~~ivG~~GsGKSTLl~~l~g~~ 141 (265)
.++|+|++|+|||||++.|.+.-
T Consensus 10 ~I~vvG~~g~GKSTLin~L~~~~ 32 (274)
T 3t5d_A 10 TLMVVGESGLGKSTLINSLFLTD 32 (274)
T ss_dssp EEEEEECTTSSHHHHHHHHSSSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 48999999999999999987743
No 338
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=96.29 E-value=0.0027 Score=50.10 Aligned_cols=22 Identities=27% Similarity=0.446 Sum_probs=19.9
Q ss_pred EEEEEcCCCChHHHHHHHHhcC
Q psy1503 119 LACIIGAIGAGKTSLLHIILNE 140 (265)
Q Consensus 119 ~~~ivG~~GsGKSTLl~~l~g~ 140 (265)
.++|+|+.|+|||||++.+.+.
T Consensus 16 ~i~v~G~~~~GKssli~~l~~~ 37 (179)
T 2y8e_A 16 KLVFLGEQSVGKTSLITRFMYD 37 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999999853
No 339
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=96.28 E-value=0.0011 Score=58.66 Aligned_cols=42 Identities=17% Similarity=0.295 Sum_probs=26.4
Q ss_pred CCcEEEEEcCCCChHHHHHHHHhcCcCCCccEEEEcCeEEEEecCCCC
Q psy1503 116 PKQLACIIGAIGAGKTSLLHIILNELRISSGKVSLGGTVSYASQEPWI 163 (265)
Q Consensus 116 ~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g~i~~v~Q~~~l 163 (265)
++-+++|.||+||||||+.+.|...+.. .| -.+.++..+.+.
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~~lg~-~~-----~~~~vI~~D~~~ 45 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQIFRR-EG-----VKAVSIEGDAFH 45 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHHHHHH-HT-----CCEEEEEGGGGB
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHhh-cC-----CCeeEeecchhh
Confidence 4568999999999999999998764421 11 125567766543
No 340
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=96.26 E-value=0.0023 Score=49.98 Aligned_cols=21 Identities=29% Similarity=0.313 Sum_probs=19.1
Q ss_pred EEEEEcCCCChHHHHHHHHhc
Q psy1503 119 LACIIGAIGAGKTSLLHIILN 139 (265)
Q Consensus 119 ~~~ivG~~GsGKSTLl~~l~g 139 (265)
.++++|++|+|||||++.+.+
T Consensus 2 ki~~~G~~~~GKssl~~~l~~ 22 (164)
T 1r8s_A 2 RILMVGLDAAGKTTILYKLKL 22 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 479999999999999999975
No 341
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=96.26 E-value=0.0027 Score=57.51 Aligned_cols=28 Identities=25% Similarity=0.457 Sum_probs=24.3
Q ss_pred cCCcEEEEEcCCCChHHHHHHHHhcCcC
Q psy1503 115 KPKQLACIIGAIGAGKTSLLHIILNELR 142 (265)
Q Consensus 115 ~~G~~~~ivG~~GsGKSTLl~~l~g~~~ 142 (265)
+++.+++|+||+|||||||...|+..+.
T Consensus 38 ~~~~lIvI~GPTgsGKTtLa~~LA~~l~ 65 (339)
T 3a8t_A 38 RKEKLLVLMGATGTGKSRLSIDLAAHFP 65 (339)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHTTSC
T ss_pred cCCceEEEECCCCCCHHHHHHHHHHHCC
Confidence 3567999999999999999999988663
No 342
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=96.25 E-value=0.0015 Score=52.16 Aligned_cols=24 Identities=33% Similarity=0.367 Sum_probs=21.1
Q ss_pred CCcEEEEEcCCCChHHHHHHHHhc
Q psy1503 116 PKQLACIIGAIGAGKTSLLHIILN 139 (265)
Q Consensus 116 ~G~~~~ivG~~GsGKSTLl~~l~g 139 (265)
+.-.++|+|++|+|||||++.+.+
T Consensus 17 ~~~~i~v~G~~~~GKssli~~l~~ 40 (183)
T 1moz_A 17 KELRILILGLDGAGKTTILYRLQI 40 (183)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTCC
T ss_pred CccEEEEECCCCCCHHHHHHHHhc
Confidence 345789999999999999999985
No 343
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=96.25 E-value=0.0023 Score=50.77 Aligned_cols=23 Identities=30% Similarity=0.426 Sum_probs=20.4
Q ss_pred EEEEEcCCCChHHHHHHHHhcCc
Q psy1503 119 LACIIGAIGAGKTSLLHIILNEL 141 (265)
Q Consensus 119 ~~~ivG~~GsGKSTLl~~l~g~~ 141 (265)
.++|+|+.|+|||||++.+.+..
T Consensus 12 ~i~v~G~~~~GKssli~~l~~~~ 34 (180)
T 2g6b_A 12 KVMLVGDSGVGKTCLLVRFKDGA 34 (180)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHhCC
Confidence 58999999999999999997643
No 344
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=96.25 E-value=0.0023 Score=50.51 Aligned_cols=23 Identities=39% Similarity=0.599 Sum_probs=20.5
Q ss_pred EEEEEcCCCChHHHHHHHHhcCc
Q psy1503 119 LACIIGAIGAGKTSLLHIILNEL 141 (265)
Q Consensus 119 ~~~ivG~~GsGKSTLl~~l~g~~ 141 (265)
.++|+|+.|+|||||++.+.+..
T Consensus 17 ~i~v~G~~~~GKSsli~~l~~~~ 39 (179)
T 1z0f_A 17 KYIIIGDMGVGKSCLLHQFTEKK 39 (179)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 58999999999999999998644
No 345
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=96.23 E-value=0.0023 Score=56.78 Aligned_cols=24 Identities=29% Similarity=0.487 Sum_probs=21.9
Q ss_pred cEEEEEcCCCChHHHHHHHHhcCc
Q psy1503 118 QLACIIGAIGAGKTSLLHIILNEL 141 (265)
Q Consensus 118 ~~~~ivG~~GsGKSTLl~~l~g~~ 141 (265)
-+++|+|++|+|||||++.|+|.-
T Consensus 11 g~v~ivG~~nvGKSTLin~l~g~~ 34 (308)
T 3iev_A 11 GYVAIVGKPNVGKSTLLNNLLGTK 34 (308)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSC
T ss_pred CEEEEECCCCCcHHHHHHHHhCCC
Confidence 489999999999999999999853
No 346
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=96.23 E-value=0.0024 Score=51.43 Aligned_cols=23 Identities=26% Similarity=0.442 Sum_probs=20.5
Q ss_pred EEEEEcCCCChHHHHHHHHhcCc
Q psy1503 119 LACIIGAIGAGKTSLLHIILNEL 141 (265)
Q Consensus 119 ~~~ivG~~GsGKSTLl~~l~g~~ 141 (265)
.++++|+.|+|||||++.+.+..
T Consensus 23 ki~vvG~~~~GKSsli~~l~~~~ 45 (190)
T 3con_A 23 KLVVVGAGGVGKSALTIQLIQNH 45 (190)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 58999999999999999998653
No 347
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=96.23 E-value=0.0024 Score=50.81 Aligned_cols=22 Identities=23% Similarity=0.437 Sum_probs=20.0
Q ss_pred EEEEEcCCCChHHHHHHHHhcC
Q psy1503 119 LACIIGAIGAGKTSLLHIILNE 140 (265)
Q Consensus 119 ~~~ivG~~GsGKSTLl~~l~g~ 140 (265)
.++|+|+.|+|||||++.+.+.
T Consensus 20 ki~v~G~~~~GKSsli~~l~~~ 41 (187)
T 2a9k_A 20 KVIMVGSGGVGKSALTLQFMYD 41 (187)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhhC
Confidence 5899999999999999999864
No 348
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=96.22 E-value=0.0024 Score=56.68 Aligned_cols=23 Identities=30% Similarity=0.525 Sum_probs=21.1
Q ss_pred EEEEEcCCCChHHHHHHHHhcCc
Q psy1503 119 LACIIGAIGAGKTSLLHIILNEL 141 (265)
Q Consensus 119 ~~~ivG~~GsGKSTLl~~l~g~~ 141 (265)
+++|+|++|+|||||++.++|.-
T Consensus 9 ~V~ivG~~nvGKSTLln~l~g~~ 31 (301)
T 1wf3_A 9 FVAIVGKPNVGKSTLLNNLLGVK 31 (301)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCc
Confidence 69999999999999999999853
No 349
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=96.22 E-value=0.0026 Score=53.15 Aligned_cols=26 Identities=35% Similarity=0.440 Sum_probs=22.4
Q ss_pred CCcEEEEEcCCCChHHHHHHHHhcCc
Q psy1503 116 PKQLACIIGAIGAGKTSLLHIILNEL 141 (265)
Q Consensus 116 ~G~~~~ivG~~GsGKSTLl~~l~g~~ 141 (265)
+|-.+.|+|+.||||||+.+.|...+
T Consensus 4 ~~~~I~l~G~~GsGKsT~a~~La~~l 29 (217)
T 3be4_A 4 KKHNLILIGAPGSGKGTQCEFIKKEY 29 (217)
T ss_dssp GCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHh
Confidence 45689999999999999999997654
No 350
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=96.22 E-value=0.0046 Score=49.15 Aligned_cols=21 Identities=29% Similarity=0.362 Sum_probs=19.3
Q ss_pred EEEEEcCCCChHHHHHHHHhc
Q psy1503 119 LACIIGAIGAGKTSLLHIILN 139 (265)
Q Consensus 119 ~~~ivG~~GsGKSTLl~~l~g 139 (265)
.++|+|+.|+|||||++.+.+
T Consensus 8 ki~~~G~~~~GKSsli~~l~~ 28 (181)
T 3t5g_A 8 KIAILGYRSVGKSSLTIQFVE 28 (181)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHc
Confidence 589999999999999999984
No 351
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=96.21 E-value=0.0025 Score=54.55 Aligned_cols=24 Identities=25% Similarity=0.378 Sum_probs=21.5
Q ss_pred cEEEEEcCCCChHHHHHHHHhcCc
Q psy1503 118 QLACIIGAIGAGKTSLLHIILNEL 141 (265)
Q Consensus 118 ~~~~ivG~~GsGKSTLl~~l~g~~ 141 (265)
-.++|+|++|+|||||++.|+|..
T Consensus 23 ~~I~lvG~~g~GKStl~n~l~~~~ 46 (260)
T 2xtp_A 23 LRIILVGKTGTGKSAAGNSILRKQ 46 (260)
T ss_dssp EEEEEEECTTSCHHHHHHHHHTSC
T ss_pred eEEEEECCCCCCHHHHHHHHhCCC
Confidence 368999999999999999998854
No 352
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=96.20 E-value=0.0032 Score=50.27 Aligned_cols=23 Identities=35% Similarity=0.598 Sum_probs=20.4
Q ss_pred EEEEEcCCCChHHHHHHHHhcCc
Q psy1503 119 LACIIGAIGAGKTSLLHIILNEL 141 (265)
Q Consensus 119 ~~~ivG~~GsGKSTLl~~l~g~~ 141 (265)
.++|+|+.|+|||||++.+.+..
T Consensus 12 ki~v~G~~~~GKSsli~~l~~~~ 34 (186)
T 2bme_A 12 KFLVIGNAGTGKSCLLHQFIEKK 34 (186)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 58999999999999999998643
No 353
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=96.19 E-value=0.0034 Score=49.80 Aligned_cols=23 Identities=30% Similarity=0.586 Sum_probs=20.6
Q ss_pred EEEEEcCCCChHHHHHHHHhcCc
Q psy1503 119 LACIIGAIGAGKTSLLHIILNEL 141 (265)
Q Consensus 119 ~~~ivG~~GsGKSTLl~~l~g~~ 141 (265)
.++|+|+.|+|||||++.+.+..
T Consensus 14 ki~v~G~~~~GKSsli~~l~~~~ 36 (181)
T 2efe_B 14 KLVLLGDVGAGKSSLVLRFVKDQ 36 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 58999999999999999998753
No 354
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=96.19 E-value=0.0027 Score=55.63 Aligned_cols=23 Identities=26% Similarity=0.380 Sum_probs=20.7
Q ss_pred CcEEEEEcCCCChHHHHHHHHhc
Q psy1503 117 KQLACIIGAIGAGKTSLLHIILN 139 (265)
Q Consensus 117 G~~~~ivG~~GsGKSTLl~~l~g 139 (265)
..+++|+|++||||||+.+.|..
T Consensus 75 ~~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 75 LYVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999999973
No 355
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=96.18 E-value=0.0016 Score=53.85 Aligned_cols=24 Identities=21% Similarity=0.380 Sum_probs=21.8
Q ss_pred cEEEEEcCCCChHHHHHHHHhcCc
Q psy1503 118 QLACIIGAIGAGKTSLLHIILNEL 141 (265)
Q Consensus 118 ~~~~ivG~~GsGKSTLl~~l~g~~ 141 (265)
-.++|+|++|+|||||++.+++..
T Consensus 30 ~~i~v~G~~~~GKSslin~l~~~~ 53 (223)
T 4dhe_A 30 PEIAFAGRSNAGKSTAINVLCNQK 53 (223)
T ss_dssp CEEEEEESCHHHHHHHHHHHTTCS
T ss_pred CEEEEEcCCCCCHHHHHHHHhCCC
Confidence 478999999999999999999864
No 356
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=96.17 E-value=0.0032 Score=49.98 Aligned_cols=28 Identities=25% Similarity=0.459 Sum_probs=23.6
Q ss_pred cCCcEEEEEcCCCChHHHHHHHHhcCcC
Q psy1503 115 KPKQLACIIGAIGAGKTSLLHIILNELR 142 (265)
Q Consensus 115 ~~G~~~~ivG~~GsGKSTLl~~l~g~~~ 142 (265)
..+..+.|+||.|+|||||++.+...+.
T Consensus 41 ~~~~~~ll~G~~G~GKT~l~~~~~~~~~ 68 (195)
T 1jbk_A 41 RTKNNPVLIGEPGVGKTAIVEGLAQRII 68 (195)
T ss_dssp SSSCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCCCceEEECCCCCCHHHHHHHHHHHHH
Confidence 3456789999999999999999987653
No 357
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=96.17 E-value=0.0034 Score=50.55 Aligned_cols=23 Identities=30% Similarity=0.460 Sum_probs=20.7
Q ss_pred EEEEEcCCCChHHHHHHHHhcCc
Q psy1503 119 LACIIGAIGAGKTSLLHIILNEL 141 (265)
Q Consensus 119 ~~~ivG~~GsGKSTLl~~l~g~~ 141 (265)
.++|+|+.|+|||||++.+.+..
T Consensus 18 ki~v~G~~~~GKSsli~~l~~~~ 40 (196)
T 3tkl_A 18 KLLLIGDSGVGKSCLLLRFADDT 40 (196)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 58999999999999999998744
No 358
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=96.16 E-value=0.0035 Score=49.98 Aligned_cols=22 Identities=23% Similarity=0.415 Sum_probs=19.8
Q ss_pred EEEEEcCCCChHHHHHHHHhcC
Q psy1503 119 LACIIGAIGAGKTSLLHIILNE 140 (265)
Q Consensus 119 ~~~ivG~~GsGKSTLl~~l~g~ 140 (265)
.++|+|+.|+|||||++.+.+.
T Consensus 20 ki~v~G~~~~GKSsl~~~l~~~ 41 (183)
T 3kkq_A 20 KLVVVGDGGVGKSALTIQFFQK 41 (183)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5799999999999999999864
No 359
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=96.16 E-value=0.0027 Score=51.69 Aligned_cols=23 Identities=39% Similarity=0.573 Sum_probs=20.6
Q ss_pred EEEEEcCCCChHHHHHHHHhcCc
Q psy1503 119 LACIIGAIGAGKTSLLHIILNEL 141 (265)
Q Consensus 119 ~~~ivG~~GsGKSTLl~~l~g~~ 141 (265)
.++|+|+.|+|||||++.+.+..
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~~ 32 (207)
T 1vg8_A 10 KVIILGDSGVGKTSLMNQYVNKK 32 (207)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 58999999999999999998754
No 360
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=96.13 E-value=0.0028 Score=51.51 Aligned_cols=22 Identities=23% Similarity=0.437 Sum_probs=19.9
Q ss_pred EEEEEcCCCChHHHHHHHHhcC
Q psy1503 119 LACIIGAIGAGKTSLLHIILNE 140 (265)
Q Consensus 119 ~~~ivG~~GsGKSTLl~~l~g~ 140 (265)
.++|+|+.|+|||||++.+.+.
T Consensus 16 ki~v~G~~~~GKSsli~~l~~~ 37 (206)
T 2bov_A 16 KVIMVGSGGVGKSALTLQFMYD 37 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999999764
No 361
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=96.13 E-value=0.0028 Score=52.35 Aligned_cols=24 Identities=33% Similarity=0.461 Sum_probs=21.5
Q ss_pred cEEEEEcCCCChHHHHHHHHhcCc
Q psy1503 118 QLACIIGAIGAGKTSLLHIILNEL 141 (265)
Q Consensus 118 ~~~~ivG~~GsGKSTLl~~l~g~~ 141 (265)
-.++|+|++|+|||||++.+.+..
T Consensus 13 ~~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 13 PSIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 368999999999999999998865
No 362
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=96.13 E-value=0.0028 Score=51.17 Aligned_cols=22 Identities=32% Similarity=0.471 Sum_probs=20.1
Q ss_pred EEEEEcCCCChHHHHHHHHhcC
Q psy1503 119 LACIIGAIGAGKTSLLHIILNE 140 (265)
Q Consensus 119 ~~~ivG~~GsGKSTLl~~l~g~ 140 (265)
.++|+|+.|+|||||++.+.+.
T Consensus 10 ki~vvG~~~~GKSsli~~l~~~ 31 (199)
T 2gf0_A 10 RVVVFGAGGVGKSSLVLRFVKG 31 (199)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCcHHHHHHHHHcC
Confidence 6899999999999999999873
No 363
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=96.13 E-value=0.0029 Score=50.66 Aligned_cols=25 Identities=28% Similarity=0.329 Sum_probs=21.8
Q ss_pred CCcEEEEEcCCCChHHHHHHHHhcC
Q psy1503 116 PKQLACIIGAIGAGKTSLLHIILNE 140 (265)
Q Consensus 116 ~G~~~~ivG~~GsGKSTLl~~l~g~ 140 (265)
+.-.++|+|+.|+|||||++.+.+.
T Consensus 17 ~~~~i~v~G~~~~GKssl~~~l~~~ 41 (186)
T 1ksh_A 17 RELRLLMLGLDNAGKTTILKKFNGE 41 (186)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHTTC
T ss_pred CeeEEEEECCCCCCHHHHHHHHhcC
Confidence 4457899999999999999999874
No 364
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=96.12 E-value=0.0029 Score=51.32 Aligned_cols=22 Identities=27% Similarity=0.729 Sum_probs=19.9
Q ss_pred EEEEEcCCCChHHHHHHHHhcC
Q psy1503 119 LACIIGAIGAGKTSLLHIILNE 140 (265)
Q Consensus 119 ~~~ivG~~GsGKSTLl~~l~g~ 140 (265)
.++|+|+.|+|||||++.+.+.
T Consensus 25 ki~vvG~~~~GKSsli~~l~~~ 46 (192)
T 2fg5_A 25 KVCLLGDTGVGKSSIVCRFVQD 46 (192)
T ss_dssp EEEEEECTTSSHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 5899999999999999999764
No 365
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=96.11 E-value=0.0029 Score=55.64 Aligned_cols=24 Identities=25% Similarity=0.382 Sum_probs=22.0
Q ss_pred EEEEEcCCCChHHHHHHHHhcCcC
Q psy1503 119 LACIIGAIGAGKTSLLHIILNELR 142 (265)
Q Consensus 119 ~~~ivG~~GsGKSTLl~~l~g~~~ 142 (265)
.++|+|+.|+|||||++.|+|.-.
T Consensus 26 ~I~vvG~~~~GKSTlln~l~g~~~ 49 (315)
T 1jwy_B 26 QIVVVGSQSSGKSSVLENIVGRDF 49 (315)
T ss_dssp EEEEEECSSSSHHHHHHHHHTSCC
T ss_pred eEEEEcCCCCCHHHHHHHHHCCCc
Confidence 699999999999999999999753
No 366
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=96.11 E-value=0.0037 Score=50.19 Aligned_cols=22 Identities=32% Similarity=0.623 Sum_probs=20.0
Q ss_pred EEEEEcCCCChHHHHHHHHhcC
Q psy1503 119 LACIIGAIGAGKTSLLHIILNE 140 (265)
Q Consensus 119 ~~~ivG~~GsGKSTLl~~l~g~ 140 (265)
.++|+|++|+|||||++.+.+.
T Consensus 9 ki~v~G~~~vGKSsli~~l~~~ 30 (184)
T 1m7b_A 9 KIVVVGDSQCGKTALLHVFAKD 30 (184)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5799999999999999999875
No 367
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=96.11 E-value=0.003 Score=53.10 Aligned_cols=23 Identities=22% Similarity=0.351 Sum_probs=20.2
Q ss_pred EEEEEcCCCChHHHHHHHHhcCc
Q psy1503 119 LACIIGAIGAGKTSLLHIILNEL 141 (265)
Q Consensus 119 ~~~ivG~~GsGKSTLl~~l~g~~ 141 (265)
+++|+|++||||||+.+.|...+
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~l 24 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKY 24 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999997644
No 368
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=96.11 E-value=0.003 Score=50.95 Aligned_cols=23 Identities=30% Similarity=0.377 Sum_probs=20.5
Q ss_pred EEEEEcCCCChHHHHHHHHhcCc
Q psy1503 119 LACIIGAIGAGKTSLLHIILNEL 141 (265)
Q Consensus 119 ~~~ivG~~GsGKSTLl~~l~g~~ 141 (265)
.++|+|+.|+|||||++.+.+..
T Consensus 24 ki~vvG~~~~GKSsli~~l~~~~ 46 (189)
T 2gf9_A 24 KLLLIGNSSVGKTSFLFRYADDS 46 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 58999999999999999998643
No 369
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=96.08 E-value=0.0031 Score=54.94 Aligned_cols=23 Identities=26% Similarity=0.391 Sum_probs=21.2
Q ss_pred EEEEEcCCCChHHHHHHHHhcCc
Q psy1503 119 LACIIGAIGAGKTSLLHIILNEL 141 (265)
Q Consensus 119 ~~~ivG~~GsGKSTLl~~l~g~~ 141 (265)
.++|+|.+|||||||++.+.|..
T Consensus 5 ~I~lvG~~n~GKSTLin~l~g~~ 27 (274)
T 3i8s_A 5 TIGLIGNPNSGKTTLFNQLTGSR 27 (274)
T ss_dssp EEEEEECTTSSHHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999999864
No 370
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=96.07 E-value=0.0025 Score=52.20 Aligned_cols=22 Identities=23% Similarity=0.339 Sum_probs=20.0
Q ss_pred EEEEEcCCCChHHHHHHHHhcC
Q psy1503 119 LACIIGAIGAGKTSLLHIILNE 140 (265)
Q Consensus 119 ~~~ivG~~GsGKSTLl~~l~g~ 140 (265)
.++|+|++|+|||||++.+.+.
T Consensus 25 ki~vvG~~~vGKSsLi~~l~~~ 46 (195)
T 3cbq_A 25 KVMLVGESGVGKSTLAGTFGGL 46 (195)
T ss_dssp EEEEECSTTSSHHHHHHHTCCE
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 6899999999999999999753
No 371
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=96.06 E-value=0.0033 Score=50.04 Aligned_cols=21 Identities=29% Similarity=0.349 Sum_probs=19.3
Q ss_pred EEEEEcCCCChHHHHHHHHhc
Q psy1503 119 LACIIGAIGAGKTSLLHIILN 139 (265)
Q Consensus 119 ~~~ivG~~GsGKSTLl~~l~g 139 (265)
.++++|++|+|||||++.+.+
T Consensus 7 ~i~~~G~~~~GKssl~~~l~~ 27 (186)
T 1mh1_A 7 KCVVVGDGAVGKTCLLISYTT 27 (186)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 589999999999999999875
No 372
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=96.06 E-value=0.0033 Score=52.32 Aligned_cols=23 Identities=26% Similarity=0.371 Sum_probs=20.1
Q ss_pred EEEEEcCCCChHHHHHHHHhcCc
Q psy1503 119 LACIIGAIGAGKTSLLHIILNEL 141 (265)
Q Consensus 119 ~~~ivG~~GsGKSTLl~~l~g~~ 141 (265)
.++|+|+.||||||+.+.|...+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKY 24 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47999999999999999997644
No 373
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=96.06 E-value=0.0035 Score=51.05 Aligned_cols=23 Identities=35% Similarity=0.400 Sum_probs=20.6
Q ss_pred EEEEEcCCCChHHHHHHHHhcCc
Q psy1503 119 LACIIGAIGAGKTSLLHIILNEL 141 (265)
Q Consensus 119 ~~~ivG~~GsGKSTLl~~l~g~~ 141 (265)
.++|+|+.|+|||||++.+.+..
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~~ 32 (203)
T 1zbd_A 10 KILIIGNSSVGKTSFLFRYADDS 32 (203)
T ss_dssp EEEEECSTTSSHHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58999999999999999998753
No 374
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=96.05 E-value=0.0033 Score=50.64 Aligned_cols=22 Identities=27% Similarity=0.259 Sum_probs=19.8
Q ss_pred EEEEEcCCCChHHHHHHHHhcC
Q psy1503 119 LACIIGAIGAGKTSLLHIILNE 140 (265)
Q Consensus 119 ~~~ivG~~GsGKSTLl~~l~g~ 140 (265)
.++|+|+.|+|||||++.+.+-
T Consensus 22 ki~v~G~~~~GKSsli~~l~~~ 43 (189)
T 1z06_A 22 KIIVIGDSNVGKTCLTYRFCAG 43 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999999753
No 375
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=96.04 E-value=0.0032 Score=51.39 Aligned_cols=24 Identities=33% Similarity=0.389 Sum_probs=21.3
Q ss_pred cEEEEEcCCCChHHHHHHHHhcCc
Q psy1503 118 QLACIIGAIGAGKTSLLHIILNEL 141 (265)
Q Consensus 118 ~~~~ivG~~GsGKSTLl~~l~g~~ 141 (265)
=.++|+|+.|+|||||++.+.+..
T Consensus 25 ~ki~vvG~~~~GKSsli~~l~~~~ 48 (201)
T 3oes_A 25 RKVVILGYRCVGKTSLAHQFVEGE 48 (201)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEEECCCCcCHHHHHHHHHhCC
Confidence 468999999999999999998754
No 376
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=96.02 E-value=0.0042 Score=52.49 Aligned_cols=26 Identities=23% Similarity=0.327 Sum_probs=22.6
Q ss_pred CCcEEEEEcCCCChHHHHHHHHhcCc
Q psy1503 116 PKQLACIIGAIGAGKTSLLHIILNEL 141 (265)
Q Consensus 116 ~G~~~~ivG~~GsGKSTLl~~l~g~~ 141 (265)
.+..+.|+|+.||||||+.+.|...+
T Consensus 15 ~~~~I~l~G~~GsGKsT~a~~La~~l 40 (233)
T 1ak2_A 15 KGVRAVLLGPPGAGKGTQAPKLAKNF 40 (233)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 45689999999999999999997654
No 377
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=96.01 E-value=0.0029 Score=57.94 Aligned_cols=22 Identities=23% Similarity=0.430 Sum_probs=20.3
Q ss_pred EEEEEcCCCChHHHHHHHHhcC
Q psy1503 119 LACIIGAIGAGKTSLLHIILNE 140 (265)
Q Consensus 119 ~~~ivG~~GsGKSTLl~~l~g~ 140 (265)
.++|||++|+|||||++.|.+.
T Consensus 3 ~v~IVG~pnvGKSTL~n~L~~~ 24 (368)
T 2dby_A 3 AVGIVGLPNVGKSTLFNALTRA 24 (368)
T ss_dssp SEEEECCSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4799999999999999999985
No 378
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=96.01 E-value=0.0041 Score=49.33 Aligned_cols=24 Identities=25% Similarity=0.228 Sum_probs=20.9
Q ss_pred cEEEEEcCCCChHHHHHHHHhcCc
Q psy1503 118 QLACIIGAIGAGKTSLLHIILNEL 141 (265)
Q Consensus 118 ~~~~ivG~~GsGKSTLl~~l~g~~ 141 (265)
=.++|+|+.|+|||||++.+.+-.
T Consensus 9 ~ki~v~G~~~~GKssl~~~~~~~~ 32 (182)
T 3bwd_D 9 IKCVTVGDGAVGKTCLLISYTSNT 32 (182)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEEECCCCCCHHHHHHHHhcCC
Confidence 468999999999999999998643
No 379
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=96.01 E-value=0.0037 Score=50.23 Aligned_cols=24 Identities=29% Similarity=0.347 Sum_probs=20.9
Q ss_pred CcEEEEEcCCCChHHHHHHHHhcC
Q psy1503 117 KQLACIIGAIGAGKTSLLHIILNE 140 (265)
Q Consensus 117 G~~~~ivG~~GsGKSTLl~~l~g~ 140 (265)
.-.++|+|+.|+|||||++.+.+-
T Consensus 16 ~~~i~v~G~~~~GKssl~~~l~~~ 39 (187)
T 1zj6_A 16 EHKVIIVGLDNAGKTTILYQFSMN 39 (187)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTT
T ss_pred ccEEEEECCCCCCHHHHHHHHhcC
Confidence 346899999999999999999853
No 380
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=96.00 E-value=0.0035 Score=50.71 Aligned_cols=23 Identities=35% Similarity=0.405 Sum_probs=20.7
Q ss_pred EEEEEcCCCChHHHHHHHHhcCc
Q psy1503 119 LACIIGAIGAGKTSLLHIILNEL 141 (265)
Q Consensus 119 ~~~ivG~~GsGKSTLl~~l~g~~ 141 (265)
.++|+|+.|+|||||++.+.+..
T Consensus 25 ki~v~G~~~~GKSsli~~l~~~~ 47 (191)
T 3dz8_A 25 KLLIIGNSSVGKTSFLFRYADDT 47 (191)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCcCHHHHHHHHhcCC
Confidence 58999999999999999998754
No 381
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=96.00 E-value=0.0034 Score=51.97 Aligned_cols=24 Identities=38% Similarity=0.613 Sum_probs=21.4
Q ss_pred cEEEEEcCCCChHHHHHHHHhcCc
Q psy1503 118 QLACIIGAIGAGKTSLLHIILNEL 141 (265)
Q Consensus 118 ~~~~ivG~~GsGKSTLl~~l~g~~ 141 (265)
-.++|+|+.|+|||||++.+++..
T Consensus 31 ~~i~i~G~~g~GKTTl~~~l~~~~ 54 (221)
T 2wsm_A 31 VAVNIMGAIGSGKTLLIERTIERI 54 (221)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHh
Confidence 478999999999999999998764
No 382
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=96.00 E-value=0.0034 Score=50.93 Aligned_cols=23 Identities=39% Similarity=0.580 Sum_probs=19.7
Q ss_pred EEEEEcCCCChHHHHHHHHhcCc
Q psy1503 119 LACIIGAIGAGKTSLLHIILNEL 141 (265)
Q Consensus 119 ~~~ivG~~GsGKSTLl~~l~g~~ 141 (265)
.++|+|+.|+|||||++.+.+..
T Consensus 28 ki~vvG~~~~GKSsLi~~l~~~~ 50 (192)
T 2il1_A 28 QVIIIGSRGVGKTSLMERFTDDT 50 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHCC--
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58999999999999999998743
No 383
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=95.99 E-value=0.0035 Score=52.42 Aligned_cols=24 Identities=25% Similarity=0.390 Sum_probs=21.4
Q ss_pred cEEEEEcCCCChHHHHHHHHhcCc
Q psy1503 118 QLACIIGAIGAGKTSLLHIILNEL 141 (265)
Q Consensus 118 ~~~~ivG~~GsGKSTLl~~l~g~~ 141 (265)
-.++|+|++|+|||||++.+.+..
T Consensus 30 ~kI~vvG~~~vGKSsLin~l~~~~ 53 (228)
T 2qu8_A 30 KTIILSGAPNVGKSSFMNIVSRAN 53 (228)
T ss_dssp EEEEEECSTTSSHHHHHHHHTTTC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 468999999999999999998853
No 384
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=95.99 E-value=0.0041 Score=50.64 Aligned_cols=24 Identities=17% Similarity=0.451 Sum_probs=21.6
Q ss_pred EEEEEcCCCChHHHHHHHHhcCcC
Q psy1503 119 LACIIGAIGAGKTSLLHIILNELR 142 (265)
Q Consensus 119 ~~~ivG~~GsGKSTLl~~l~g~~~ 142 (265)
.++|+|+.|+|||||++.+.+...
T Consensus 22 ki~~vG~~~vGKTsLi~~l~~~~~ 45 (196)
T 3llu_A 22 RILLMGLRRSGKSSIQKVVFHKMS 45 (196)
T ss_dssp EEEEEESTTSSHHHHHHHHHSCCC
T ss_pred EEEEECCCCCCHHHHHHHHHhcCC
Confidence 689999999999999999998653
No 385
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=95.99 E-value=0.0036 Score=50.59 Aligned_cols=23 Identities=35% Similarity=0.458 Sum_probs=20.5
Q ss_pred EEEEEcCCCChHHHHHHHHhcCc
Q psy1503 119 LACIIGAIGAGKTSLLHIILNEL 141 (265)
Q Consensus 119 ~~~ivG~~GsGKSTLl~~l~g~~ 141 (265)
.++|+|+.|+|||||++.+.+..
T Consensus 23 ki~v~G~~~~GKSsli~~l~~~~ 45 (191)
T 2a5j_A 23 KYIIIGDTGVGKSCLLLQFTDKR 45 (191)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 58999999999999999998643
No 386
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=95.99 E-value=0.0036 Score=50.55 Aligned_cols=29 Identities=17% Similarity=0.336 Sum_probs=23.9
Q ss_pred cEEEEEcCCCChHHHHHHHHhcC------cCCCcc
Q psy1503 118 QLACIIGAIGAGKTSLLHIILNE------LRISSG 146 (265)
Q Consensus 118 ~~~~ivG~~GsGKSTLl~~l~g~------~~~~~G 146 (265)
-.++|+|+.|+|||||++.+.+. +.|+-|
T Consensus 18 ~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~~t~~ 52 (199)
T 4bas_A 18 LQVVMCGLDNSGKTTIINQVKPAQSSSKHITATVG 52 (199)
T ss_dssp EEEEEECCTTSCHHHHHHHHSCCC----CCCCCSS
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCCcccccccccc
Confidence 46899999999999999999873 355555
No 387
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=95.98 E-value=0.0038 Score=51.03 Aligned_cols=23 Identities=35% Similarity=0.613 Sum_probs=19.6
Q ss_pred EEEEEcCCCChHHHHHHHHhcCc
Q psy1503 119 LACIIGAIGAGKTSLLHIILNEL 141 (265)
Q Consensus 119 ~~~ivG~~GsGKSTLl~~l~g~~ 141 (265)
.++|+|+.|+|||||++.+.+..
T Consensus 27 ki~v~G~~~~GKSsLi~~l~~~~ 49 (200)
T 2o52_A 27 KFLVIGSAGTGKSCLLHQFIENK 49 (200)
T ss_dssp EEEEEESTTSSHHHHHHHHHC--
T ss_pred EEEEECcCCCCHHHHHHHHHhCC
Confidence 58999999999999999998643
No 388
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=95.98 E-value=0.0038 Score=53.96 Aligned_cols=23 Identities=26% Similarity=0.380 Sum_probs=21.0
Q ss_pred EEEEEcCCCChHHHHHHHHhcCc
Q psy1503 119 LACIIGAIGAGKTSLLHIILNEL 141 (265)
Q Consensus 119 ~~~ivG~~GsGKSTLl~~l~g~~ 141 (265)
.++++|++|||||||++.+.|..
T Consensus 7 kI~lvG~~nvGKTsL~n~l~g~~ 29 (258)
T 3a1s_A 7 KVALAGCPNVGKTSLFNALTGTK 29 (258)
T ss_dssp EEEEECCTTSSHHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 58999999999999999999854
No 389
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=95.97 E-value=0.003 Score=50.99 Aligned_cols=24 Identities=17% Similarity=0.217 Sum_probs=21.2
Q ss_pred cEEEEEcCCCChHHHHHHHHhcCc
Q psy1503 118 QLACIIGAIGAGKTSLLHIILNEL 141 (265)
Q Consensus 118 ~~~~ivG~~GsGKSTLl~~l~g~~ 141 (265)
=.++|+|+.|+|||||++.+.+..
T Consensus 22 ~ki~v~G~~~~GKSsli~~l~~~~ 45 (190)
T 2h57_A 22 VHVLCLGLDNSGKTTIINKLKPSN 45 (190)
T ss_dssp EEEEEEECTTSSHHHHHHHTSCGG
T ss_pred cEEEEECCCCCCHHHHHHHHhcCC
Confidence 368999999999999999998754
No 390
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=95.97 E-value=0.0023 Score=56.73 Aligned_cols=29 Identities=34% Similarity=0.410 Sum_probs=25.0
Q ss_pred CCcEEEEEcCCCChHHHHHHHHhcCcCCC
Q psy1503 116 PKQLACIIGAIGAGKTSLLHIILNELRIS 144 (265)
Q Consensus 116 ~G~~~~ivG~~GsGKSTLl~~l~g~~~~~ 144 (265)
.+..+.|.||+|+|||||++.+.+...+.
T Consensus 36 ~~~~lll~G~~GtGKT~la~~i~~~~~~~ 64 (324)
T 1l8q_A 36 LYNPIFIYGSVGTGKTHLLQAAGNEAKKR 64 (324)
T ss_dssp SCSSEEEECSSSSSHHHHHHHHHHHHHHT
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHHHC
Confidence 45689999999999999999999877544
No 391
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=95.96 E-value=0.0038 Score=50.14 Aligned_cols=22 Identities=41% Similarity=0.560 Sum_probs=20.2
Q ss_pred EEEEEcCCCChHHHHHHHHhcC
Q psy1503 119 LACIIGAIGAGKTSLLHIILNE 140 (265)
Q Consensus 119 ~~~ivG~~GsGKSTLl~~l~g~ 140 (265)
.++|+|+.|+|||||++.+.+.
T Consensus 17 ~i~v~G~~~~GKssli~~l~~~ 38 (195)
T 1x3s_A 17 KILIIGESGVGKSSLLLRFTDD 38 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 6899999999999999999864
No 392
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=95.96 E-value=0.0042 Score=55.73 Aligned_cols=25 Identities=28% Similarity=0.502 Sum_probs=22.1
Q ss_pred CcEEEEEcCCCChHHHHHHHHhcCc
Q psy1503 117 KQLACIIGAIGAGKTSLLHIILNEL 141 (265)
Q Consensus 117 G~~~~ivG~~GsGKSTLl~~l~g~~ 141 (265)
+.+++|+||+|||||||...|+..+
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~~ 27 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKRL 27 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHTT
T ss_pred CcEEEEECCCcCCHHHHHHHHHHhC
Confidence 4589999999999999999998755
No 393
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=95.96 E-value=0.0037 Score=51.12 Aligned_cols=23 Identities=30% Similarity=0.447 Sum_probs=20.5
Q ss_pred EEEEEcCCCChHHHHHHHHhcCc
Q psy1503 119 LACIIGAIGAGKTSLLHIILNEL 141 (265)
Q Consensus 119 ~~~ivG~~GsGKSTLl~~l~g~~ 141 (265)
.++|+|+.|+|||||++.+.+..
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~~ 32 (206)
T 2bcg_Y 10 KLLLIGNSGVGKSCLLLRFSDDT 32 (206)
T ss_dssp EEEEEESTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58999999999999999998643
No 394
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=95.95 E-value=0.0038 Score=51.04 Aligned_cols=24 Identities=29% Similarity=0.444 Sum_probs=21.0
Q ss_pred cEEEEEcCCCChHHHHHHHHhcCc
Q psy1503 118 QLACIIGAIGAGKTSLLHIILNEL 141 (265)
Q Consensus 118 ~~~~ivG~~GsGKSTLl~~l~g~~ 141 (265)
=.++|+|+.|+|||||++.+.+..
T Consensus 21 ~~i~v~G~~~~GKSsli~~l~~~~ 44 (213)
T 3cph_A 21 MKILLIGDSGVGKSCLLVRFVEDK 44 (213)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHCC
T ss_pred eEEEEECCCCCCHHHHHHHHHhCC
Confidence 468999999999999999998643
No 395
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=95.95 E-value=0.0043 Score=52.29 Aligned_cols=29 Identities=24% Similarity=0.313 Sum_probs=24.7
Q ss_pred cCCcEEEEEcCCCChHHHHHHHHhcCcCC
Q psy1503 115 KPKQLACIIGAIGAGKTSLLHIILNELRI 143 (265)
Q Consensus 115 ~~G~~~~ivG~~GsGKSTLl~~l~g~~~~ 143 (265)
-+|.+++|.|+.||||||+++.|...+..
T Consensus 4 m~g~~i~~eG~~gsGKsT~~~~l~~~l~~ 32 (213)
T 4edh_A 4 MTGLFVTLEGPEGAGKSTNRDYLAERLRE 32 (213)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHHHT
T ss_pred CCceEEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 36889999999999999999999776643
No 396
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=95.94 E-value=0.0033 Score=53.66 Aligned_cols=28 Identities=29% Similarity=0.382 Sum_probs=22.1
Q ss_pred cCCcEEEEEcCCCChHHHHHHHHhcCcC
Q psy1503 115 KPKQLACIIGAIGAGKTSLLHIILNELR 142 (265)
Q Consensus 115 ~~G~~~~ivG~~GsGKSTLl~~l~g~~~ 142 (265)
.+|.++.|.|+.||||||+++.|...+.
T Consensus 23 ~~g~~I~~eG~~GsGKsT~~~~l~~~l~ 50 (227)
T 3v9p_A 23 ARGKFITFEGIDGAGKTTHLQWFCDRLQ 50 (227)
T ss_dssp CCCCEEEEECCC---CHHHHHHHHHHHH
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 5799999999999999999999977654
No 397
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=95.94 E-value=0.0044 Score=53.86 Aligned_cols=29 Identities=21% Similarity=0.362 Sum_probs=23.0
Q ss_pred cEEEEEcCCCChHHHHHHHHhcCcCCCcc
Q psy1503 118 QLACIIGAIGAGKTSLLHIILNELRISSG 146 (265)
Q Consensus 118 ~~~~ivG~~GsGKSTLl~~l~g~~~~~~G 146 (265)
..++++|.+|+|||||++.|.|......|
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~~~~~~~ 128 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGKRASSVG 128 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTCC----
T ss_pred hheEEeCCCCCCHHHHHHHHhcccccccC
Confidence 58999999999999999999987654333
No 398
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=95.94 E-value=0.0035 Score=50.18 Aligned_cols=22 Identities=32% Similarity=0.342 Sum_probs=20.2
Q ss_pred EEEEEcCCCChHHHHHHHHhcC
Q psy1503 119 LACIIGAIGAGKTSLLHIILNE 140 (265)
Q Consensus 119 ~~~ivG~~GsGKSTLl~~l~g~ 140 (265)
.++|+|+.|+|||||++.+.+.
T Consensus 23 ~i~v~G~~~~GKSsli~~l~~~ 44 (181)
T 2h17_A 23 KVIIVGLDNAGKTTILYQFSMN 44 (181)
T ss_dssp EEEEEEETTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999999864
No 399
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=95.94 E-value=0.0039 Score=50.85 Aligned_cols=21 Identities=33% Similarity=0.589 Sum_probs=19.7
Q ss_pred EEEEEcCCCChHHHHHHHHhc
Q psy1503 119 LACIIGAIGAGKTSLLHIILN 139 (265)
Q Consensus 119 ~~~ivG~~GsGKSTLl~~l~g 139 (265)
.++|+|++|+|||||++.+.|
T Consensus 8 kv~lvG~~~vGKSsL~~~~~~ 28 (192)
T 2cjw_A 8 RVVLIGEQGVGKSTLANIFAG 28 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 589999999999999999986
No 400
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=95.93 E-value=0.004 Score=50.29 Aligned_cols=22 Identities=23% Similarity=0.407 Sum_probs=20.0
Q ss_pred EEEEEcCCCChHHHHHHHHhcC
Q psy1503 119 LACIIGAIGAGKTSLLHIILNE 140 (265)
Q Consensus 119 ~~~ivG~~GsGKSTLl~~l~g~ 140 (265)
.++|+|+.|+|||||++.+.+.
T Consensus 24 ki~v~G~~~~GKSsli~~l~~~ 45 (188)
T 1zd9_A 24 ELTLVGLQYSGKTTFVNVIASG 45 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999999863
No 401
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=95.92 E-value=0.004 Score=50.76 Aligned_cols=26 Identities=19% Similarity=0.239 Sum_probs=21.6
Q ss_pred CCcEEEEEcCCCChHHHHHHHHhcCc
Q psy1503 116 PKQLACIIGAIGAGKTSLLHIILNEL 141 (265)
Q Consensus 116 ~G~~~~ivG~~GsGKSTLl~~l~g~~ 141 (265)
+.=.++|+|+.|+|||||++.+.+..
T Consensus 27 ~~~ki~v~G~~~~GKSsli~~l~~~~ 52 (199)
T 2p5s_A 27 KAYKIVLAGDAAVGKSSFLMRLCKNE 52 (199)
T ss_dssp -CEEEEEESSTTSSHHHHHHHHHHCC
T ss_pred CCeEEEEECcCCCCHHHHHHHHHhCC
Confidence 33478999999999999999998654
No 402
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=95.92 E-value=0.0041 Score=50.47 Aligned_cols=23 Identities=30% Similarity=0.481 Sum_probs=20.5
Q ss_pred cEEEEEcCCCChHHHHHHHHhcC
Q psy1503 118 QLACIIGAIGAGKTSLLHIILNE 140 (265)
Q Consensus 118 ~~~~ivG~~GsGKSTLl~~l~g~ 140 (265)
-.++|+|+.|+|||||++.+.+.
T Consensus 29 ~ki~v~G~~~vGKSsli~~l~~~ 51 (196)
T 2atv_A 29 VKLAIFGRAGVGKSALVVRFLTK 51 (196)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 46899999999999999999864
No 403
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=95.91 E-value=0.0041 Score=51.11 Aligned_cols=24 Identities=25% Similarity=0.391 Sum_probs=21.4
Q ss_pred cEEEEEcCCCChHHHHHHHHhcCc
Q psy1503 118 QLACIIGAIGAGKTSLLHIILNEL 141 (265)
Q Consensus 118 ~~~~ivG~~GsGKSTLl~~l~g~~ 141 (265)
-.++|+|+.|+|||||++.+.+..
T Consensus 26 ~ki~vvG~~~~GKSsli~~l~~~~ 49 (207)
T 2fv8_A 26 KKLVVVGDGACGKTCLLIVFSKDE 49 (207)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHSS
T ss_pred cEEEEECcCCCCHHHHHHHHhcCC
Confidence 478999999999999999998754
No 404
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=95.91 E-value=0.0042 Score=53.52 Aligned_cols=23 Identities=26% Similarity=0.479 Sum_probs=21.1
Q ss_pred EEEEEcCCCChHHHHHHHHhcCc
Q psy1503 119 LACIIGAIGAGKTSLLHIILNEL 141 (265)
Q Consensus 119 ~~~ivG~~GsGKSTLl~~l~g~~ 141 (265)
.++|+|++|+|||||++.++|.-
T Consensus 38 ~I~lvG~~g~GKSSLin~l~~~~ 60 (262)
T 3def_A 38 TVLVLGKGGVGKSSTVNSLIGEQ 60 (262)
T ss_dssp EEEEEECTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57999999999999999999854
No 405
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=95.90 E-value=0.0052 Score=50.66 Aligned_cols=22 Identities=32% Similarity=0.487 Sum_probs=19.7
Q ss_pred EEEEEcCCCChHHHHHHHHhcC
Q psy1503 119 LACIIGAIGAGKTSLLHIILNE 140 (265)
Q Consensus 119 ~~~ivG~~GsGKSTLl~~l~g~ 140 (265)
.++|+|++|+|||||++.+.+.
T Consensus 28 ki~lvG~~~vGKSsLi~~l~~~ 49 (201)
T 2ew1_A 28 KIVLIGNAGVGKTCLVRRFTQG 49 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 5899999999999999988754
No 406
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=95.90 E-value=0.0038 Score=54.24 Aligned_cols=23 Identities=26% Similarity=0.419 Sum_probs=21.5
Q ss_pred EEEEEcCCCChHHHHHHHHhcCc
Q psy1503 119 LACIIGAIGAGKTSLLHIILNEL 141 (265)
Q Consensus 119 ~~~ivG~~GsGKSTLl~~l~g~~ 141 (265)
.++|+|..|+|||||++.|.|.-
T Consensus 28 ~i~vvG~~~~GKSSLln~l~g~~ 50 (299)
T 2aka_B 28 QIAVVGGQSAGKSSVLENFVGRD 50 (299)
T ss_dssp EEEEEEBTTSCHHHHHHHHHTSC
T ss_pred eEEEEeCCCCCHHHHHHHHHCCC
Confidence 69999999999999999999865
No 407
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=95.89 E-value=0.0043 Score=57.46 Aligned_cols=30 Identities=20% Similarity=0.311 Sum_probs=25.2
Q ss_pred EEEcCCcEEEEEcCCCChHHHHHHHHhcCc
Q psy1503 112 ITFKPKQLACIIGAIGAGKTSLLHIILNEL 141 (265)
Q Consensus 112 l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~ 141 (265)
+.-.+..++.|+|++||||||+.+.|+..+
T Consensus 253 ~~~~~~~lIil~G~pGSGKSTla~~L~~~~ 282 (416)
T 3zvl_A 253 LLSPNPEVVVAVGFPGAGKSTFIQEHLVSA 282 (416)
T ss_dssp SCCSSCCEEEEESCTTSSHHHHHHHHTGGG
T ss_pred cCCCCCEEEEEECCCCCCHHHHHHHHHHhc
Confidence 344567899999999999999999997644
No 408
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=95.89 E-value=0.0046 Score=52.41 Aligned_cols=26 Identities=19% Similarity=0.391 Sum_probs=23.1
Q ss_pred CCcEEEEEcCCCChHHHHHHHHhcCc
Q psy1503 116 PKQLACIIGAIGAGKTSLLHIILNEL 141 (265)
Q Consensus 116 ~G~~~~ivG~~GsGKSTLl~~l~g~~ 141 (265)
+|.+++|.|+.||||||+.+.|...+
T Consensus 1 ~~~~i~~~G~~g~GKtt~~~~l~~~l 26 (241)
T 2ocp_A 1 GPRRLSIEGNIAVGKSTFVKLLTKTY 26 (241)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHHC
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHc
Confidence 36789999999999999999998765
No 409
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=95.89 E-value=0.0041 Score=56.33 Aligned_cols=25 Identities=28% Similarity=0.419 Sum_probs=22.0
Q ss_pred cEEEEEcCCCChHHHHHHHHhcCcC
Q psy1503 118 QLACIIGAIGAGKTSLLHIILNELR 142 (265)
Q Consensus 118 ~~~~ivG~~GsGKSTLl~~l~g~~~ 142 (265)
.+++|+||+|||||||.+.|+..+.
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l~ 32 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKFN 32 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred ceEEEECCCcCcHHHHHHHHHHHcC
Confidence 4799999999999999999987653
No 410
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=95.89 E-value=0.0055 Score=51.41 Aligned_cols=26 Identities=23% Similarity=0.419 Sum_probs=22.9
Q ss_pred EEcCCcEEEEEcCCCChHHHHHHHHh
Q psy1503 113 TFKPKQLACIIGAIGAGKTSLLHIIL 138 (265)
Q Consensus 113 ~i~~G~~~~ivG~~GsGKSTLl~~l~ 138 (265)
-+++|+++.|.|++|+|||||+.-++
T Consensus 26 Gl~~G~l~~i~G~pG~GKT~l~l~~~ 51 (251)
T 2zts_A 26 GFPEGTTVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp SEETTCEEEEECCTTSSHHHHHHHHH
T ss_pred CCCCCeEEEEEeCCCCCHHHHHHHHH
Confidence 38999999999999999999986543
No 411
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=95.88 E-value=0.0055 Score=49.52 Aligned_cols=23 Identities=26% Similarity=0.284 Sum_probs=20.7
Q ss_pred EEEEEcCCCChHHHHHHHHhcCc
Q psy1503 119 LACIIGAIGAGKTSLLHIILNEL 141 (265)
Q Consensus 119 ~~~ivG~~GsGKSTLl~~l~g~~ 141 (265)
.++|+|+.|+|||||++.+.+..
T Consensus 25 ki~~vG~~~~GKSsl~~~l~~~~ 47 (194)
T 3reg_A 25 KIVVVGDGAVGKTCLLLAFSKGE 47 (194)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 68999999999999999998743
No 412
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=95.88 E-value=0.0047 Score=50.88 Aligned_cols=23 Identities=26% Similarity=0.329 Sum_probs=20.7
Q ss_pred EEEEEcCCCChHHHHHHHHhcCc
Q psy1503 119 LACIIGAIGAGKTSLLHIILNEL 141 (265)
Q Consensus 119 ~~~ivG~~GsGKSTLl~~l~g~~ 141 (265)
.++|+|+.|+|||||++.+.+..
T Consensus 27 ki~vvG~~~~GKSsLi~~l~~~~ 49 (217)
T 2f7s_A 27 KLLALGDSGVGKTTFLYRYTDNK 49 (217)
T ss_dssp EEEEESCTTSSHHHHHHHHHCSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 58999999999999999998754
No 413
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=95.88 E-value=0.0043 Score=54.15 Aligned_cols=22 Identities=23% Similarity=0.454 Sum_probs=20.3
Q ss_pred cEEEEEcCCCChHHHHHHHHhc
Q psy1503 118 QLACIIGAIGAGKTSLLHIILN 139 (265)
Q Consensus 118 ~~~~ivG~~GsGKSTLl~~l~g 139 (265)
.++.|+|++||||||+.+.|..
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999999999986
No 414
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=95.86 E-value=0.0047 Score=51.12 Aligned_cols=22 Identities=36% Similarity=0.581 Sum_probs=19.8
Q ss_pred EEEEEcCCCChHHHHHHHHhcC
Q psy1503 119 LACIIGAIGAGKTSLLHIILNE 140 (265)
Q Consensus 119 ~~~ivG~~GsGKSTLl~~l~g~ 140 (265)
.++|+|+.|+|||||++.+.+.
T Consensus 36 ki~vvG~~~vGKSsli~~l~~~ 57 (214)
T 2j1l_A 36 KVVLVGDGGCGKTSLLMVFADG 57 (214)
T ss_dssp EEEEEECTTSSHHHHHHHHHC-
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 6899999999999999999863
No 415
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=95.85 E-value=0.0051 Score=52.78 Aligned_cols=27 Identities=26% Similarity=0.548 Sum_probs=24.2
Q ss_pred CCcEEEEEcCCCChHHHHHHHHhcCcC
Q psy1503 116 PKQLACIIGAIGAGKTSLLHIILNELR 142 (265)
Q Consensus 116 ~G~~~~ivG~~GsGKSTLl~~l~g~~~ 142 (265)
+|.+++|.|++||||||+++.|...+.
T Consensus 26 ~~~~i~~eG~~GsGKsT~~~~l~~~l~ 52 (236)
T 3lv8_A 26 NAKFIVIEGLEGAGKSTAIQVVVETLQ 52 (236)
T ss_dssp CCCEEEEEESTTSCHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 689999999999999999999977654
No 416
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=95.85 E-value=0.0045 Score=53.54 Aligned_cols=23 Identities=30% Similarity=0.470 Sum_probs=21.0
Q ss_pred EEEEEcCCCChHHHHHHHHhcCc
Q psy1503 119 LACIIGAIGAGKTSLLHIILNEL 141 (265)
Q Consensus 119 ~~~ivG~~GsGKSTLl~~l~g~~ 141 (265)
.++++|++|+|||||++.|.|..
T Consensus 41 ~I~vvG~~g~GKSSLin~l~~~~ 63 (270)
T 1h65_A 41 TILVMGKGGVGKSSTVNSIIGER 63 (270)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999999854
No 417
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=95.85 E-value=0.0049 Score=50.05 Aligned_cols=24 Identities=25% Similarity=0.279 Sum_probs=20.5
Q ss_pred CcEEEEEcCCCChHHHHHHHHhcC
Q psy1503 117 KQLACIIGAIGAGKTSLLHIILNE 140 (265)
Q Consensus 117 G~~~~ivG~~GsGKSTLl~~l~g~ 140 (265)
.-.++|+|+.|+|||||++.+.+.
T Consensus 20 ~~ki~~~G~~~~GKssl~~~l~~~ 43 (201)
T 2q3h_A 20 GVKCVLVGDGAVGKTSLVVSYTTN 43 (201)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHC-
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 346899999999999999999864
No 418
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=95.85 E-value=0.0059 Score=50.15 Aligned_cols=24 Identities=25% Similarity=0.351 Sum_probs=20.9
Q ss_pred cEEEEEcCCCChHHHHHHHHhcCc
Q psy1503 118 QLACIIGAIGAGKTSLLHIILNEL 141 (265)
Q Consensus 118 ~~~~ivG~~GsGKSTLl~~l~g~~ 141 (265)
-.++|+|++|+|||||++.+.+..
T Consensus 8 ~ki~vvG~~~~GKTsli~~l~~~~ 31 (214)
T 2fh5_B 8 RAVLFVGLCDSGKTLLFVRLLTGQ 31 (214)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHSC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 368999999999999999998644
No 419
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=95.85 E-value=0.0035 Score=52.05 Aligned_cols=25 Identities=24% Similarity=0.340 Sum_probs=21.6
Q ss_pred CcEEEEEcCCCChHHHHHHHHhcCc
Q psy1503 117 KQLACIIGAIGAGKTSLLHIILNEL 141 (265)
Q Consensus 117 G~~~~ivG~~GsGKSTLl~~l~g~~ 141 (265)
+.+++|+|++||||||+.+.|...+
T Consensus 3 ~~~i~i~G~~gsGkst~~~~l~~~~ 27 (219)
T 2h92_A 3 AINIALDGPAAAGKSTIAKRVASEL 27 (219)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc
Confidence 4579999999999999999997643
No 420
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=95.83 E-value=0.0046 Score=53.39 Aligned_cols=28 Identities=29% Similarity=0.419 Sum_probs=24.9
Q ss_pred EcCCcEEEEEcCCCChHHHHHHHHhcCc
Q psy1503 114 FKPKQLACIIGAIGAGKTSLLHIILNEL 141 (265)
Q Consensus 114 i~~G~~~~ivG~~GsGKSTLl~~l~g~~ 141 (265)
+.++.-+.|.||+|+|||||++.++..+
T Consensus 48 ~~~~~~~ll~G~~GtGKT~la~~la~~~ 75 (285)
T 3h4m_A 48 IEPPKGILLYGPPGTGKTLLAKAVATET 75 (285)
T ss_dssp CCCCSEEEEESSSSSSHHHHHHHHHHHT
T ss_pred CCCCCeEEEECCCCCcHHHHHHHHHHHh
Confidence 4567789999999999999999998875
No 421
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=95.83 E-value=0.0036 Score=49.70 Aligned_cols=22 Identities=32% Similarity=0.527 Sum_probs=19.9
Q ss_pred EEEEEcCCCChHHHHHHHHhcC
Q psy1503 119 LACIIGAIGAGKTSLLHIILNE 140 (265)
Q Consensus 119 ~~~ivG~~GsGKSTLl~~l~g~ 140 (265)
.++++|+.|+|||||++.+.+.
T Consensus 9 ki~~vG~~~vGKTsli~~l~~~ 30 (178)
T 2iwr_A 9 RLGVLGDARSGKSSLIHRFLTG 30 (178)
T ss_dssp EEEEECCGGGCHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999998764
No 422
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=95.82 E-value=0.0021 Score=60.66 Aligned_cols=42 Identities=17% Similarity=0.392 Sum_probs=32.6
Q ss_pred ceeeceEEEcCCcEEEEEcCCCChHHHHHHHHhcCcCCCccEE
Q psy1503 106 TLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKV 148 (265)
Q Consensus 106 ~l~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i 148 (265)
+++.+ +.+-+|+.++|+|++|+|||||++.|.+......+.+
T Consensus 141 ~ID~L-~pi~kGq~~~i~G~sGvGKTtL~~~l~~~~~~~~~~i 182 (473)
T 1sky_E 141 VVDLL-APYIKGGKIGLFGGAGVGKTVLIQELIHNIAQEHGGI 182 (473)
T ss_dssp HHHHH-SCEETTCEEEEECCSSSCHHHHHHHHHHHHHHHTCCC
T ss_pred HHHHH-hhhccCCEEEEECCCCCCccHHHHHHHhhhhhccCcE
Confidence 34444 6778999999999999999999999987665434444
No 423
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=95.81 E-value=0.0057 Score=51.61 Aligned_cols=27 Identities=30% Similarity=0.466 Sum_probs=24.2
Q ss_pred CCcEEEEEcCCCChHHHHHHHHhcCcC
Q psy1503 116 PKQLACIIGAIGAGKTSLLHIILNELR 142 (265)
Q Consensus 116 ~G~~~~ivG~~GsGKSTLl~~l~g~~~ 142 (265)
+|.++.+.|+.||||||+++.|...+.
T Consensus 2 ~g~~i~~eG~~gsGKsT~~~~l~~~l~ 28 (213)
T 4tmk_A 2 RSKYIVIEGLEGAGKTTARNVVVETLE 28 (213)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 488999999999999999999987664
No 424
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=95.81 E-value=0.0044 Score=49.19 Aligned_cols=29 Identities=21% Similarity=0.366 Sum_probs=24.0
Q ss_pred cCCcEEEEEcCCCChHHHHHHHHhcCcCC
Q psy1503 115 KPKQLACIIGAIGAGKTSLLHIILNELRI 143 (265)
Q Consensus 115 ~~G~~~~ivG~~GsGKSTLl~~l~g~~~~ 143 (265)
..+..+.|+||+|+|||||++.+...+..
T Consensus 41 ~~~~~vll~G~~G~GKT~la~~~~~~~~~ 69 (187)
T 2p65_A 41 RTKNNPILLGDPGVGKTAIVEGLAIKIVQ 69 (187)
T ss_dssp SSSCEEEEESCGGGCHHHHHHHHHHHHHT
T ss_pred CCCCceEEECCCCCCHHHHHHHHHHHHHh
Confidence 34567899999999999999999876643
No 425
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=95.80 E-value=0.005 Score=49.78 Aligned_cols=22 Identities=36% Similarity=0.507 Sum_probs=19.6
Q ss_pred EEEEEcCCCChHHHHHHHHhcC
Q psy1503 119 LACIIGAIGAGKTSLLHIILNE 140 (265)
Q Consensus 119 ~~~ivG~~GsGKSTLl~~l~g~ 140 (265)
.++|+|+.|+|||||++.+.+.
T Consensus 23 ki~vvG~~~vGKTsLi~~l~~~ 44 (187)
T 3c5c_A 23 NLAILGRRGAGKSALTVKFLTK 44 (187)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCcHHHHHHHHHhC
Confidence 6899999999999999888753
No 426
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=95.78 E-value=0.0044 Score=52.52 Aligned_cols=30 Identities=13% Similarity=0.362 Sum_probs=25.1
Q ss_pred EEEcCCcEEEEEcCCCChHHHHHHHHhcCc
Q psy1503 112 ITFKPKQLACIIGAIGAGKTSLLHIILNEL 141 (265)
Q Consensus 112 l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~ 141 (265)
-.+++..++.|+||.||||+|..+.|...+
T Consensus 24 ~~~~k~kiI~llGpPGsGKgTqa~~L~~~~ 53 (217)
T 3umf_A 24 QKLAKAKVIFVLGGPGSGKGTQCEKLVQKF 53 (217)
T ss_dssp CCTTSCEEEEEECCTTCCHHHHHHHHHHHH
T ss_pred hhccCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 345677899999999999999999997654
No 427
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=95.78 E-value=0.0062 Score=50.28 Aligned_cols=23 Identities=30% Similarity=0.574 Sum_probs=20.8
Q ss_pred EEEEEcCCCChHHHHHHHHhcCc
Q psy1503 119 LACIIGAIGAGKTSLLHIILNEL 141 (265)
Q Consensus 119 ~~~ivG~~GsGKSTLl~~l~g~~ 141 (265)
.++|+|+.|+|||||++.+.+..
T Consensus 30 ki~vvG~~~vGKSsLi~~l~~~~ 52 (205)
T 1gwn_A 30 KIVVVGDSQCGKTALLHVFAKDC 52 (205)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 68999999999999999998753
No 428
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=95.77 E-value=0.0031 Score=54.30 Aligned_cols=28 Identities=25% Similarity=0.287 Sum_probs=23.9
Q ss_pred EcCCcEEEEEcCCCChHHHHHHHHhcCc
Q psy1503 114 FKPKQLACIIGAIGAGKTSLLHIILNEL 141 (265)
Q Consensus 114 i~~G~~~~ivG~~GsGKSTLl~~l~g~~ 141 (265)
.+++.+++|.|+.||||||+.+.|...+
T Consensus 21 ~~~~~~I~ieG~~GsGKST~~~~L~~~l 48 (263)
T 1p5z_B 21 GTRIKKISIEGNIAAGKSTFVNILKQLC 48 (263)
T ss_dssp --CCEEEEEECSTTSSHHHHHTTTGGGC
T ss_pred ccCceEEEEECCCCCCHHHHHHHHHHhc
Confidence 3577899999999999999999998765
No 429
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=95.76 E-value=0.0032 Score=50.19 Aligned_cols=23 Identities=30% Similarity=0.439 Sum_probs=9.3
Q ss_pred EEEEEcCCCChHHHHHHHHhcCc
Q psy1503 119 LACIIGAIGAGKTSLLHIILNEL 141 (265)
Q Consensus 119 ~~~ivG~~GsGKSTLl~~l~g~~ 141 (265)
.++|+|+.|+|||||++.+.+..
T Consensus 10 ki~v~G~~~~GKssl~~~l~~~~ 32 (183)
T 2fu5_C 10 KLLLIGDSGVGKTCVLFRFSEDA 32 (183)
T ss_dssp EEEEECCCCC-------------
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 58999999999999999987643
No 430
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=95.76 E-value=0.0068 Score=50.94 Aligned_cols=36 Identities=17% Similarity=0.168 Sum_probs=28.4
Q ss_pred cceeeceEEEcCCcEEEEEcCCCChHHHHHHHHhcCc
Q psy1503 105 LTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNEL 141 (265)
Q Consensus 105 ~~l~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~g~~ 141 (265)
..++..-+.+ .|..+.|+||+|+|||||...|....
T Consensus 23 ~~lHa~~v~~-~g~~ilI~GpsGsGKStLA~~La~~g 58 (205)
T 2qmh_A 23 RSMHGVLVDI-YGLGVLITGDSGVGKSETALELVQRG 58 (205)
T ss_dssp CCEESEEEEE-TTEEEEEECCCTTTTHHHHHHHHTTT
T ss_pred eeeeEEEEEE-CCEEEEEECCCCCCHHHHHHHHHHhC
Confidence 3466655554 57899999999999999999887653
No 431
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=95.76 E-value=0.0061 Score=51.59 Aligned_cols=29 Identities=28% Similarity=0.303 Sum_probs=25.9
Q ss_pred cCCcEEEEEcCCCChHHHHHHHHhcCcCC
Q psy1503 115 KPKQLACIIGAIGAGKTSLLHIILNELRI 143 (265)
Q Consensus 115 ~~G~~~~ivG~~GsGKSTLl~~l~g~~~~ 143 (265)
++|.++.+-|+.||||||+.+.|...+..
T Consensus 3 ~~g~~i~~eG~~g~GKst~~~~l~~~l~~ 31 (216)
T 3tmk_A 3 GRGKLILIEGLDRTGKTTQCNILYKKLQP 31 (216)
T ss_dssp CCCCEEEEEECSSSSHHHHHHHHHHHHCS
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 47899999999999999999999887654
No 432
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=95.76 E-value=0.0057 Score=54.27 Aligned_cols=27 Identities=22% Similarity=0.444 Sum_probs=24.7
Q ss_pred EEcCCcEEEEEcCCCChHHHHHHHHhc
Q psy1503 113 TFKPKQLACIIGAIGAGKTSLLHIILN 139 (265)
Q Consensus 113 ~i~~G~~~~ivG~~GsGKSTLl~~l~g 139 (265)
-+++|+++.|.||+|+|||||+..++.
T Consensus 94 Gl~~g~i~~i~G~~gsGKT~la~~la~ 120 (322)
T 2i1q_A 94 GLESQSVTEFAGVFGSGKTQIMHQSCV 120 (322)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHH
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999999987764
No 433
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=95.75 E-value=0.0049 Score=50.11 Aligned_cols=25 Identities=24% Similarity=0.251 Sum_probs=21.4
Q ss_pred CCcEEEEEcCCCChHHHHHHHHhcC
Q psy1503 116 PKQLACIIGAIGAGKTSLLHIILNE 140 (265)
Q Consensus 116 ~G~~~~ivG~~GsGKSTLl~~l~g~ 140 (265)
+.-.++|+|+.|+|||||++.+.+-
T Consensus 28 ~~~ki~v~G~~~vGKSsLi~~l~~~ 52 (192)
T 2b6h_A 28 KQMRILMVGLDAAGKTTILYKLKLG 52 (192)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHCSS
T ss_pred CccEEEEECCCCCCHHHHHHHHHhC
Confidence 4456899999999999999999753
No 434
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=95.74 E-value=0.0067 Score=49.54 Aligned_cols=23 Identities=30% Similarity=0.417 Sum_probs=20.5
Q ss_pred EEEEEcCCCChHHHHHHHHhcCc
Q psy1503 119 LACIIGAIGAGKTSLLHIILNEL 141 (265)
Q Consensus 119 ~~~ivG~~GsGKSTLl~~l~g~~ 141 (265)
.++|+|+.|+|||||++.+.+..
T Consensus 27 ki~vvG~~~~GKSsli~~l~~~~ 49 (201)
T 2gco_A 27 KLVIVGDGACGKTCLLIVFSKDQ 49 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 58999999999999999998743
No 435
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=95.71 E-value=0.0063 Score=51.81 Aligned_cols=29 Identities=24% Similarity=0.265 Sum_probs=24.9
Q ss_pred EcCCcEEEEEcCCCChHHHHHHHHhcCcC
Q psy1503 114 FKPKQLACIIGAIGAGKTSLLHIILNELR 142 (265)
Q Consensus 114 i~~G~~~~ivG~~GsGKSTLl~~l~g~~~ 142 (265)
-.+|.+++|.|+.||||||+.+.|...+.
T Consensus 18 ~~~~~~i~~~G~~g~GKst~~~~l~~~l~ 46 (223)
T 3ld9_A 18 GPGSMFITFEGIDGSGKTTQSHLLAEYLS 46 (223)
T ss_dssp -CCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 34789999999999999999999987654
No 436
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=95.69 E-value=0.0046 Score=55.59 Aligned_cols=24 Identities=29% Similarity=0.456 Sum_probs=21.7
Q ss_pred cEEEEEcCCCChHHHHHHHHhcCc
Q psy1503 118 QLACIIGAIGAGKTSLLHIILNEL 141 (265)
Q Consensus 118 ~~~~ivG~~GsGKSTLl~~l~g~~ 141 (265)
..+.|+||+|||||||.+.|+..+
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l 29 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADAL 29 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc
Confidence 478999999999999999998765
No 437
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=95.66 E-value=0.0078 Score=48.53 Aligned_cols=22 Identities=32% Similarity=0.439 Sum_probs=20.1
Q ss_pred EEEEEcCCCChHHHHHHHHhcC
Q psy1503 119 LACIIGAIGAGKTSLLHIILNE 140 (265)
Q Consensus 119 ~~~ivG~~GsGKSTLl~~l~g~ 140 (265)
.++|+|+.|+|||||++.+.+.
T Consensus 20 ki~v~G~~~~GKssli~~l~~~ 41 (194)
T 2atx_A 20 KCVVVGDGAVGKTCLLMSYAND 41 (194)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999999864
No 438
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=95.64 E-value=0.0049 Score=56.09 Aligned_cols=37 Identities=22% Similarity=0.358 Sum_probs=29.5
Q ss_pred cceeeceEE---EcCCcEEEEEcCCCChHHHHHHHHhcCcC
Q psy1503 105 LTLNAVSIT---FKPKQLACIIGAIGAGKTSLLHIILNELR 142 (265)
Q Consensus 105 ~~l~~isl~---i~~G~~~~ivG~~GsGKSTLl~~l~g~~~ 142 (265)
+.|+.+ +. +++|+++.|.|++|+|||||...++....
T Consensus 49 ~~LD~~-Lg~GGl~~G~ii~I~G~pGsGKTtLal~la~~~~ 88 (356)
T 1u94_A 49 LSLDIA-LGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQ 88 (356)
T ss_dssp HHHHHH-TSSSSEETTSEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred HHHHHH-hccCCccCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 346554 33 88999999999999999999987776543
No 439
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=95.63 E-value=0.0071 Score=49.65 Aligned_cols=25 Identities=28% Similarity=0.403 Sum_probs=22.0
Q ss_pred EEEEEcCCCChHHHHHHHHhcCcCC
Q psy1503 119 LACIIGAIGAGKTSLLHIILNELRI 143 (265)
Q Consensus 119 ~~~ivG~~GsGKSTLl~~l~g~~~~ 143 (265)
.+.|.||+|+|||||++.+...+..
T Consensus 47 ~~ll~G~~G~GKT~l~~~~~~~~~~ 71 (250)
T 1njg_A 47 AYLFSGTRGVGKTSIARLLAKGLNC 71 (250)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhcC
Confidence 7899999999999999999876543
No 440
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=95.62 E-value=0.0066 Score=51.49 Aligned_cols=27 Identities=33% Similarity=0.413 Sum_probs=22.9
Q ss_pred cCCcEEEEEcCCCChHHHHHHHHhcCc
Q psy1503 115 KPKQLACIIGAIGAGKTSLLHIILNEL 141 (265)
Q Consensus 115 ~~G~~~~ivG~~GsGKSTLl~~l~g~~ 141 (265)
+...-+.|.||+|+||||+++.+....
T Consensus 37 ~~~~~vll~G~~GtGKT~la~~la~~~ 63 (262)
T 2qz4_A 37 KVPKGALLLGPPGCGKTLLAKAVATEA 63 (262)
T ss_dssp CCCCEEEEESCTTSSHHHHHHHHHHHH
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 344568899999999999999998765
No 441
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=95.62 E-value=0.0068 Score=54.27 Aligned_cols=25 Identities=24% Similarity=0.339 Sum_probs=21.9
Q ss_pred CcEEEEEcCCCChHHHHHHHHhcCc
Q psy1503 117 KQLACIIGAIGAGKTSLLHIILNEL 141 (265)
Q Consensus 117 G~~~~ivG~~GsGKSTLl~~l~g~~ 141 (265)
..+++|+||+|||||||...|+..+
T Consensus 10 ~~~i~i~GptgsGKt~la~~La~~~ 34 (316)
T 3foz_A 10 PKAIFLMGPTASGKTALAIELRKIL 34 (316)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CcEEEEECCCccCHHHHHHHHHHhC
Confidence 4579999999999999999998654
No 442
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=95.60 E-value=0.0062 Score=50.56 Aligned_cols=24 Identities=38% Similarity=0.612 Sum_probs=21.1
Q ss_pred cEEEEEcCCCChHHHHHHHHhcCc
Q psy1503 118 QLACIIGAIGAGKTSLLHIILNEL 141 (265)
Q Consensus 118 ~~~~ivG~~GsGKSTLl~~l~g~~ 141 (265)
-.++|+|+.|+|||||++.+++..
T Consensus 39 ~~i~ivG~~gvGKTtl~~~l~~~~ 62 (226)
T 2hf9_A 39 VAFDFMGAIGSGKTLLIEKLIDNL 62 (226)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHh
Confidence 478999999999999999888754
No 443
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=95.57 E-value=0.009 Score=46.64 Aligned_cols=32 Identities=19% Similarity=0.222 Sum_probs=25.9
Q ss_pred cCCcEEEEEcCCCChHHHHHHHHhcCcCCCcc
Q psy1503 115 KPKQLACIIGAIGAGKTSLLHIILNELRISSG 146 (265)
Q Consensus 115 ~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G 146 (265)
+.+.-+.|.||+|+|||++.+.|........+
T Consensus 22 ~~~~~vll~G~~GtGKt~lA~~i~~~~~~~~~ 53 (145)
T 3n70_A 22 ETDIAVWLYGAPGTGRMTGARYLHQFGRNAQG 53 (145)
T ss_dssp TCCSCEEEESSTTSSHHHHHHHHHHSSTTTTS
T ss_pred CCCCCEEEECCCCCCHHHHHHHHHHhCCccCC
Confidence 45667899999999999999999887654333
No 444
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=95.53 E-value=0.0046 Score=49.68 Aligned_cols=24 Identities=33% Similarity=0.295 Sum_probs=20.7
Q ss_pred CCcEEEEEcCCCChHHHHHHHHhc
Q psy1503 116 PKQLACIIGAIGAGKTSLLHIILN 139 (265)
Q Consensus 116 ~G~~~~ivG~~GsGKSTLl~~l~g 139 (265)
+.=.++|+|+.|+|||||++.+.+
T Consensus 21 ~~~~i~v~G~~~~GKssli~~l~~ 44 (189)
T 2x77_A 21 RKIRVLMLGLDNAGKTSILYRLHL 44 (189)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTCC
T ss_pred CceEEEEECCCCCCHHHHHHHHHc
Confidence 344699999999999999999965
No 445
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=95.51 E-value=0.0071 Score=49.50 Aligned_cols=23 Identities=17% Similarity=0.303 Sum_probs=20.3
Q ss_pred EEEEEcCCCChHHHHHHHHhcCc
Q psy1503 119 LACIIGAIGAGKTSLLHIILNEL 141 (265)
Q Consensus 119 ~~~ivG~~GsGKSTLl~~l~g~~ 141 (265)
.++|+|+.|+|||||++.+.+..
T Consensus 31 ki~vvG~~~vGKSsli~~l~~~~ 53 (201)
T 2hup_A 31 KLVLVGDASVGKTCVVQRFKTGA 53 (201)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhhCC
Confidence 58999999999999999997643
No 446
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=95.50 E-value=0.0031 Score=52.03 Aligned_cols=23 Identities=35% Similarity=0.661 Sum_probs=20.2
Q ss_pred EEEEEcCCCChHHHHHHHHhcCc
Q psy1503 119 LACIIGAIGAGKTSLLHIILNEL 141 (265)
Q Consensus 119 ~~~ivG~~GsGKSTLl~~l~g~~ 141 (265)
.++|+|+.|+|||||++.+.+..
T Consensus 13 ki~vvG~~~~GKSsli~~l~~~~ 35 (218)
T 4djt_A 13 KICLIGDGGVGKTTYINRVLDGR 35 (218)
T ss_dssp EEEEECCTTSSHHHHHCBCTTCS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 57999999999999999998643
No 447
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=95.50 E-value=0.008 Score=50.31 Aligned_cols=22 Identities=32% Similarity=0.534 Sum_probs=20.3
Q ss_pred EEEEEcCCCChHHHHHHHHhcC
Q psy1503 119 LACIIGAIGAGKTSLLHIILNE 140 (265)
Q Consensus 119 ~~~ivG~~GsGKSTLl~~l~g~ 140 (265)
.++|+|++|+|||||++.+.|.
T Consensus 39 kVvlvG~~~vGKSSLl~r~~~~ 60 (211)
T 2g3y_A 39 RVVLIGEQGVGKSTLANIFAGV 60 (211)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999999864
No 448
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=95.47 E-value=0.0074 Score=49.53 Aligned_cols=22 Identities=27% Similarity=0.305 Sum_probs=19.6
Q ss_pred cEEEEEcCCCChHHHHHHHHhc
Q psy1503 118 QLACIIGAIGAGKTSLLHIILN 139 (265)
Q Consensus 118 ~~~~ivG~~GsGKSTLl~~l~g 139 (265)
=.++|+|+.|+|||||++.+.+
T Consensus 31 ~ki~vvG~~~~GKSsLi~~l~~ 52 (204)
T 4gzl_A 31 IKCVVVGDGAVGKTCLLISYTT 52 (204)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEECcCCCCHHHHHHHHHh
Confidence 4689999999999999988874
No 449
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=95.47 E-value=0.0025 Score=64.00 Aligned_cols=33 Identities=30% Similarity=0.421 Sum_probs=29.8
Q ss_pred ceEEEcCCcEEEEEcCCCChHHHHHHHHhcCcC
Q psy1503 110 VSITFKPKQLACIIGAIGAGKTSLLHIILNELR 142 (265)
Q Consensus 110 isl~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~ 142 (265)
.++.+.++..+.++||+|+|||||+++|++.+.
T Consensus 504 ~~~~~~~~~~vLL~GppGtGKT~Lakala~~~~ 536 (806)
T 1ypw_A 504 LKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQ 536 (806)
T ss_dssp TCCCCCCCCCCCCBCCTTSSHHHHHHHHHHHHT
T ss_pred HhcCCCCCceeEEECCCCCCHHHHHHHHHHHhC
Confidence 467788999999999999999999999998774
No 450
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=95.47 E-value=0.0022 Score=54.99 Aligned_cols=29 Identities=24% Similarity=0.368 Sum_probs=23.0
Q ss_pred eEEEcCCcEEEEEcCCCChHHHHHHHHhcCc
Q psy1503 111 SITFKPKQLACIIGAIGAGKTSLLHIILNEL 141 (265)
Q Consensus 111 sl~i~~G~~~~ivG~~GsGKSTLl~~l~g~~ 141 (265)
.+..+.| +.|.||+|+|||||++++.+..
T Consensus 40 ~~~~~~~--vll~G~~GtGKT~la~~la~~~ 68 (268)
T 2r62_A 40 GAKIPKG--VLLVGPPGTGKTLLAKAVAGEA 68 (268)
T ss_dssp SCCCCSC--CCCBCSSCSSHHHHHHHHHHHH
T ss_pred CCCCCce--EEEECCCCCcHHHHHHHHHHHh
Confidence 3444445 7899999999999999998743
No 451
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=95.46 E-value=0.0061 Score=56.98 Aligned_cols=22 Identities=27% Similarity=0.555 Sum_probs=20.6
Q ss_pred EEEEEcCCCChHHHHHHHHhcC
Q psy1503 119 LACIIGAIGAGKTSLLHIILNE 140 (265)
Q Consensus 119 ~~~ivG~~GsGKSTLl~~l~g~ 140 (265)
.++|+|++|+|||||++.|.|.
T Consensus 25 ~V~lvG~~nvGKSTL~n~l~~~ 46 (456)
T 4dcu_A 25 VVAIVGRPNVGKSTIFNRIAGE 46 (456)
T ss_dssp EEEEECSSSSSHHHHHHHHEEE
T ss_pred EEEEECCCCCcHHHHHHHHhCC
Confidence 7999999999999999999883
No 452
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=95.45 E-value=0.0071 Score=49.60 Aligned_cols=24 Identities=29% Similarity=0.398 Sum_probs=20.0
Q ss_pred CCcEEEEEcCCCChHHHHH-HHHhc
Q psy1503 116 PKQLACIIGAIGAGKTSLL-HIILN 139 (265)
Q Consensus 116 ~G~~~~ivG~~GsGKSTLl-~~l~g 139 (265)
+|.++.++||.||||||++ +++..
T Consensus 2 ~g~i~vi~G~~gsGKTT~ll~~~~~ 26 (184)
T 2orw_A 2 SGKLTVITGPMYSGKTTELLSFVEI 26 (184)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHH
T ss_pred ccEEEEEECCCCCCHHHHHHHHHHH
Confidence 4889999999999999997 44443
No 453
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=95.43 E-value=0.0034 Score=50.99 Aligned_cols=22 Identities=18% Similarity=0.498 Sum_probs=4.5
Q ss_pred EEEEEcCCCChHHHHHHHHhcC
Q psy1503 119 LACIIGAIGAGKTSLLHIILNE 140 (265)
Q Consensus 119 ~~~ivG~~GsGKSTLl~~l~g~ 140 (265)
.++|+|+.|+|||||++.+.+.
T Consensus 22 ~i~v~G~~~~GKssli~~l~~~ 43 (208)
T 2yc2_C 22 KVAVVGEATVGKSALISMFTSK 43 (208)
T ss_dssp EEEEC-----------------
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 6899999999999999988775
No 454
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=95.42 E-value=0.008 Score=49.96 Aligned_cols=23 Identities=30% Similarity=0.455 Sum_probs=20.6
Q ss_pred EEEEEcCCCChHHHHHHHHhcCc
Q psy1503 119 LACIIGAIGAGKTSLLHIILNEL 141 (265)
Q Consensus 119 ~~~ivG~~GsGKSTLl~~l~g~~ 141 (265)
.++|+|+.|+|||||++.+.+..
T Consensus 15 ki~v~G~~~vGKSsli~~l~~~~ 37 (223)
T 3cpj_B 15 KIVLIGDSGVGKSNLLSRFTKNE 37 (223)
T ss_dssp EEEEESCTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 58999999999999999998743
No 455
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=95.35 E-value=0.0023 Score=59.76 Aligned_cols=27 Identities=19% Similarity=0.338 Sum_probs=24.1
Q ss_pred cEEEEEcCCCChHHHHHHHHhcCcCCC
Q psy1503 118 QLACIIGAIGAGKTSLLHIILNELRIS 144 (265)
Q Consensus 118 ~~~~ivG~~GsGKSTLl~~l~g~~~~~ 144 (265)
.+++|+|++|+||||++..|++.+...
T Consensus 100 ~vI~ivG~~GvGKTTla~~La~~l~~~ 126 (432)
T 2v3c_C 100 NVILLVGIQGSGKTTTAAKLARYIQKR 126 (432)
T ss_dssp CCEEEECCSSSSTTHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 589999999999999999999887643
No 456
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=95.33 E-value=0.0098 Score=52.60 Aligned_cols=26 Identities=27% Similarity=0.448 Sum_probs=22.2
Q ss_pred CCcEEEEEcCCCChHHHHHHHHhcCc
Q psy1503 116 PKQLACIIGAIGAGKTSLLHIILNEL 141 (265)
Q Consensus 116 ~G~~~~ivG~~GsGKSTLl~~l~g~~ 141 (265)
++-.++++|+.|+|||||++.+.+..
T Consensus 2 ~~~KI~lvG~~~vGKSSLi~~l~~~~ 27 (307)
T 3r7w_A 2 LGSKLLLMGRSGSGKSSMRSIIFSNY 27 (307)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHSCC
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCC
Confidence 34578999999999999999988763
No 457
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=95.32 E-value=0.0089 Score=49.54 Aligned_cols=23 Identities=22% Similarity=0.562 Sum_probs=20.4
Q ss_pred cEEEEEcCCCChHHHHHHHHhcC
Q psy1503 118 QLACIIGAIGAGKTSLLHIILNE 140 (265)
Q Consensus 118 ~~~~ivG~~GsGKSTLl~~l~g~ 140 (265)
=.++|+|+.|+|||||++.+.+.
T Consensus 28 ~ki~vvG~~~vGKSsL~~~l~~~ 50 (214)
T 3q3j_B 28 CKLVLVGDVQCGKTAMLQVLAKD 50 (214)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECcCCCCHHHHHHHHhcC
Confidence 36899999999999999998764
No 458
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=95.31 E-value=0.0099 Score=48.90 Aligned_cols=33 Identities=24% Similarity=0.245 Sum_probs=25.5
Q ss_pred ceeeceEEEcCCcEEEEEcCCCChHHHHHHHHhc
Q psy1503 106 TLNAVSITFKPKQLACIIGAIGAGKTSLLHIILN 139 (265)
Q Consensus 106 ~l~~isl~i~~G~~~~ivG~~GsGKSTLl~~l~g 139 (265)
.++..-+. -.|.-+.|.|+||+|||||...+..
T Consensus 6 ~lHas~v~-v~G~gvli~G~SGaGKStlal~L~~ 38 (181)
T 3tqf_A 6 TWHANFLV-IDKMGVLITGEANIGKSELSLALID 38 (181)
T ss_dssp EEESEEEE-ETTEEEEEEESSSSSHHHHHHHHHH
T ss_pred EEEEEEEE-ECCEEEEEEcCCCCCHHHHHHHHHH
Confidence 34444443 4688999999999999999988765
No 459
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=95.30 E-value=0.012 Score=51.66 Aligned_cols=26 Identities=27% Similarity=0.318 Sum_probs=22.8
Q ss_pred CcEEEEEcCCCChHHHHHHHHhcCcC
Q psy1503 117 KQLACIIGAIGAGKTSLLHIILNELR 142 (265)
Q Consensus 117 G~~~~ivG~~GsGKSTLl~~l~g~~~ 142 (265)
+-.++++|.+|+|||||++.|.|...
T Consensus 120 ~~~v~~vG~~nvGKSsliN~l~~~~~ 145 (282)
T 1puj_A 120 AIRALIIGIPNVGKSTLINRLAKKNI 145 (282)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTSCC
T ss_pred CceEEEEecCCCchHHHHHHHhcCce
Confidence 34789999999999999999998753
No 460
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=95.30 E-value=0.0094 Score=55.22 Aligned_cols=24 Identities=25% Similarity=0.470 Sum_probs=21.1
Q ss_pred cEEEEEcCCCChHHHHHHHHhcCc
Q psy1503 118 QLACIIGAIGAGKTSLLHIILNEL 141 (265)
Q Consensus 118 ~~~~ivG~~GsGKSTLl~~l~g~~ 141 (265)
.+++|+||+|||||||...|+..+
T Consensus 3 ~~i~i~GptgsGKttla~~La~~~ 26 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLSIQLAQKF 26 (409)
T ss_dssp EEEEEEECSSSSHHHHHHHHHHHH
T ss_pred cEEEEECcchhhHHHHHHHHHHHC
Confidence 478999999999999999987654
No 461
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=95.29 E-value=0.012 Score=48.24 Aligned_cols=22 Identities=23% Similarity=0.289 Sum_probs=19.8
Q ss_pred EEEEEcCCCChHHHHHHHHhcC
Q psy1503 119 LACIIGAIGAGKTSLLHIILNE 140 (265)
Q Consensus 119 ~~~ivG~~GsGKSTLl~~l~g~ 140 (265)
.++|+|+.|+|||||++.+.+-
T Consensus 11 ki~i~G~~~~GKTsli~~l~~~ 32 (212)
T 2j0v_A 11 KCVTVGDGAVGKTCMLICYTSN 32 (212)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999753
No 462
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.26 E-value=0.0045 Score=54.90 Aligned_cols=37 Identities=27% Similarity=0.356 Sum_probs=28.6
Q ss_pred ceeeceEEEcCC--cEEEEEcCCCChHHHHHHHHhcCcC
Q psy1503 106 TLNAVSITFKPK--QLACIIGAIGAGKTSLLHIILNELR 142 (265)
Q Consensus 106 ~l~~isl~i~~G--~~~~ivG~~GsGKSTLl~~l~g~~~ 142 (265)
+++.+.-.+..| ..+.|.||+|+||||+++.+.+.+.
T Consensus 45 ~~~~l~~~l~~~~~~~~ll~G~~G~GKT~la~~la~~l~ 83 (353)
T 1sxj_D 45 AVTVLKKTLKSANLPHMLFYGPPGTGKTSTILALTKELY 83 (353)
T ss_dssp THHHHHHHTTCTTCCCEEEECSTTSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCEEEEECCCCCCHHHHHHHHHHHhC
Confidence 445555555555 4599999999999999999998764
No 463
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=95.21 E-value=0.0091 Score=55.94 Aligned_cols=29 Identities=17% Similarity=0.322 Sum_probs=25.2
Q ss_pred CCcEEEEEcCCCChHHHHHHHHhcCcCCC
Q psy1503 116 PKQLACIIGAIGAGKTSLLHIILNELRIS 144 (265)
Q Consensus 116 ~G~~~~ivG~~GsGKSTLl~~l~g~~~~~ 144 (265)
++.+++++|++|+||||++..|+..+...
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~ 127 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQKR 127 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTT
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHHC
Confidence 46799999999999999999998877653
No 464
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=95.12 E-value=0.012 Score=49.10 Aligned_cols=26 Identities=23% Similarity=0.442 Sum_probs=23.0
Q ss_pred CcEEEEEcCCCChHHHHHHHHhcCcC
Q psy1503 117 KQLACIIGAIGAGKTSLLHIILNELR 142 (265)
Q Consensus 117 G~~~~ivG~~GsGKSTLl~~l~g~~~ 142 (265)
|.+++|=|+-||||||+++.|...+.
T Consensus 2 ~kFI~~EG~dGsGKsTq~~~L~~~L~ 27 (205)
T 4hlc_A 2 SAFITFEGPEGSGKTTVINEVYHRLV 27 (205)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCcHHHHHHHHHHHHH
Confidence 57899999999999999999987664
No 465
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=95.10 E-value=0.013 Score=51.13 Aligned_cols=27 Identities=26% Similarity=0.357 Sum_probs=22.8
Q ss_pred CCcEEEEEcCCCChHHHHHHHHhcCcC
Q psy1503 116 PKQLACIIGAIGAGKTSLLHIILNELR 142 (265)
Q Consensus 116 ~G~~~~ivG~~GsGKSTLl~~l~g~~~ 142 (265)
++..+.|.||+|+||||+++.+...+.
T Consensus 66 ~~~~vll~G~~GtGKT~la~~la~~l~ 92 (309)
T 3syl_A 66 PTLHMSFTGNPGTGKTTVALKMAGLLH 92 (309)
T ss_dssp CCCEEEEEECTTSSHHHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHHH
Confidence 455789999999999999998877653
No 466
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=95.08 E-value=0.012 Score=49.19 Aligned_cols=23 Identities=26% Similarity=0.410 Sum_probs=20.2
Q ss_pred EEEEEcCCCChHHHHHHHHhcCc
Q psy1503 119 LACIIGAIGAGKTSLLHIILNEL 141 (265)
Q Consensus 119 ~~~ivG~~GsGKSTLl~~l~g~~ 141 (265)
++.|+||.||||+|..+.|+..+
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~ 24 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEK 24 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 57899999999999999997655
No 467
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=95.06 E-value=0.014 Score=52.25 Aligned_cols=29 Identities=24% Similarity=0.252 Sum_probs=25.2
Q ss_pred cCCcEEEEEcCCCChHHHHHHHHhcCcCC
Q psy1503 115 KPKQLACIIGAIGAGKTSLLHIILNELRI 143 (265)
Q Consensus 115 ~~G~~~~ivG~~GsGKSTLl~~l~g~~~~ 143 (265)
.+|..+.|.||+|+||||+++.+...+..
T Consensus 68 ~~~~~vLl~GppGtGKT~la~~la~~l~~ 96 (368)
T 3uk6_A 68 IAGRAVLIAGQPGTGKTAIAMGMAQALGP 96 (368)
T ss_dssp CTTCEEEEEESTTSSHHHHHHHHHHHHCS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 35678999999999999999999987753
No 468
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=95.04 E-value=0.01 Score=52.94 Aligned_cols=29 Identities=28% Similarity=0.472 Sum_probs=25.0
Q ss_pred cCCcEEEEEcCCCChHHHHHHHHhcCcCC
Q psy1503 115 KPKQLACIIGAIGAGKTSLLHIILNELRI 143 (265)
Q Consensus 115 ~~G~~~~ivG~~GsGKSTLl~~l~g~~~~ 143 (265)
..+..+.|.||+|+|||||++.+......
T Consensus 42 ~~~~~vll~G~~G~GKT~l~~~~~~~~~~ 70 (387)
T 2v1u_A 42 EKPSNALLYGLTGTGKTAVARLVLRRLEA 70 (387)
T ss_dssp CCCCCEEECBCTTSSHHHHHHHHHHHHHH
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHHHHH
Confidence 45678999999999999999999887643
No 469
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=95.00 E-value=0.013 Score=47.60 Aligned_cols=23 Identities=26% Similarity=0.329 Sum_probs=20.6
Q ss_pred EEEEEcCCCChHHHHHHHHhcCc
Q psy1503 119 LACIIGAIGAGKTSLLHIILNEL 141 (265)
Q Consensus 119 ~~~ivG~~GsGKSTLl~~l~g~~ 141 (265)
.+.|.||.|+||||+++.+...+
T Consensus 40 ~~ll~G~~G~GKT~l~~~l~~~~ 62 (226)
T 2chg_A 40 HLLFSGPPGTGKTATAIALARDL 62 (226)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHH
Confidence 49999999999999999998754
No 470
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=94.96 E-value=0.012 Score=53.05 Aligned_cols=27 Identities=22% Similarity=0.276 Sum_probs=22.9
Q ss_pred CCcEEEEEcCCCChHHHHHHHHhcCcC
Q psy1503 116 PKQLACIIGAIGAGKTSLLHIILNELR 142 (265)
Q Consensus 116 ~G~~~~ivG~~GsGKSTLl~~l~g~~~ 142 (265)
..-+++|+|+.|+|||||++.|.+.+.
T Consensus 78 ~~~~I~i~G~~G~GKSTl~~~L~~~l~ 104 (355)
T 3p32_A 78 NAHRVGITGVPGVGKSTAIEALGMHLI 104 (355)
T ss_dssp CSEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHH
Confidence 345799999999999999999987653
No 471
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=94.95 E-value=0.012 Score=53.59 Aligned_cols=25 Identities=20% Similarity=0.453 Sum_probs=23.2
Q ss_pred CCcEEEEEcCCCChHHHHHHHHhcC
Q psy1503 116 PKQLACIIGAIGAGKTSLLHIILNE 140 (265)
Q Consensus 116 ~G~~~~ivG~~GsGKSTLl~~l~g~ 140 (265)
++..++++|.+|+|||||++.|.|.
T Consensus 161 ~~~~i~~vG~~nvGKStliN~L~~~ 185 (369)
T 3ec1_A 161 EGGDVYVVGCTNVGKSTFINRIIEE 185 (369)
T ss_dssp TTSCEEEECCTTSSHHHHHHHHHHH
T ss_pred ccCcEEEEcCCCCchHHHHHHHHhh
Confidence 5678999999999999999999986
No 472
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=94.93 E-value=0.01 Score=50.08 Aligned_cols=28 Identities=14% Similarity=0.152 Sum_probs=24.9
Q ss_pred EcCCcEEEEEcCCCChHHHHHHHHhcCc
Q psy1503 114 FKPKQLACIIGAIGAGKTSLLHIILNEL 141 (265)
Q Consensus 114 i~~G~~~~ivG~~GsGKSTLl~~l~g~~ 141 (265)
+++...+.|.||.|+||||+..+|+..+
T Consensus 55 iPkkn~ili~GPPGtGKTt~a~ala~~l 82 (212)
T 1tue_A 55 TPKKNCLVFCGPANTGKSYFGMSFIHFI 82 (212)
T ss_dssp CTTCSEEEEESCGGGCHHHHHHHHHHHH
T ss_pred CCcccEEEEECCCCCCHHHHHHHHHHHh
Confidence 6666789999999999999999998876
No 473
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=94.83 E-value=0.0093 Score=53.79 Aligned_cols=23 Identities=26% Similarity=0.419 Sum_probs=21.5
Q ss_pred EEEEEcCCCChHHHHHHHHhcCc
Q psy1503 119 LACIIGAIGAGKTSLLHIILNEL 141 (265)
Q Consensus 119 ~~~ivG~~GsGKSTLl~~l~g~~ 141 (265)
.++|+|..|+|||||++.|.|.-
T Consensus 33 ~I~vvG~~~~GKSSLln~L~g~~ 55 (353)
T 2x2e_A 33 QIAVVGGQSAGKSSVLENFVGRD 55 (353)
T ss_dssp EEEEECBTTSSHHHHHHTTTTSC
T ss_pred eEEEECCCCCCHHHHHHHHhCCC
Confidence 79999999999999999999964
No 474
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=94.80 E-value=0.015 Score=51.72 Aligned_cols=27 Identities=26% Similarity=0.385 Sum_probs=23.9
Q ss_pred cCCcEEEEEcCCCChHHHHHHHHhcCc
Q psy1503 115 KPKQLACIIGAIGAGKTSLLHIILNEL 141 (265)
Q Consensus 115 ~~G~~~~ivG~~GsGKSTLl~~l~g~~ 141 (265)
.+..-+.|.||+|+|||+|++++....
T Consensus 43 ~~~~~iLL~GppGtGKT~la~ala~~~ 69 (322)
T 1xwi_A 43 TPWRGILLFGPPGTGKSYLAKAVATEA 69 (322)
T ss_dssp CCCSEEEEESSSSSCHHHHHHHHHHHT
T ss_pred CCCceEEEECCCCccHHHHHHHHHHHc
Confidence 455789999999999999999999876
No 475
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=94.79 E-value=0.013 Score=53.56 Aligned_cols=43 Identities=23% Similarity=0.356 Sum_probs=31.4
Q ss_pred EEcCCcEEEEEcCCCChHHHHHHHHhcCcCCCccEEEEcCeEEEEecCC
Q psy1503 113 TFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSLGGTVSYASQEP 161 (265)
Q Consensus 113 ~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g~i~~v~Q~~ 161 (265)
-+++|+++.|.||+|+|||||...++....... +.+.|+.-+.
T Consensus 70 Gl~~G~li~I~G~pGsGKTtlal~la~~~~~~g------~~vlyi~~E~ 112 (366)
T 1xp8_A 70 GIPRGRITEIYGPESGGKTTLALAIVAQAQKAG------GTCAFIDAEH 112 (366)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHTT------CCEEEEESSC
T ss_pred CccCCcEEEEEcCCCCChHHHHHHHHHHHHHCC------CeEEEEECCC
Confidence 478999999999999999999977765432221 3466666553
No 476
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=94.77 E-value=0.013 Score=53.39 Aligned_cols=25 Identities=16% Similarity=0.450 Sum_probs=23.3
Q ss_pred CCcEEEEEcCCCChHHHHHHHHhcC
Q psy1503 116 PKQLACIIGAIGAGKTSLLHIILNE 140 (265)
Q Consensus 116 ~G~~~~ivG~~GsGKSTLl~~l~g~ 140 (265)
++..++++|.+|+|||||++.|.|.
T Consensus 159 ~~~~i~~vG~~nvGKStliN~L~~~ 183 (368)
T 3h2y_A 159 GGKDVYVVGCTNVGKSTFINRMIKE 183 (368)
T ss_dssp TTSCEEEEEBTTSSHHHHHHHHHHH
T ss_pred ccceEEEecCCCCChhHHHHHHHhh
Confidence 5788999999999999999999986
No 477
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=94.74 E-value=0.012 Score=55.40 Aligned_cols=26 Identities=27% Similarity=0.367 Sum_probs=22.5
Q ss_pred cCCcEEEEEcCCCChHHHHHHHHhcC
Q psy1503 115 KPKQLACIIGAIGAGKTSLLHIILNE 140 (265)
Q Consensus 115 ~~G~~~~ivG~~GsGKSTLl~~l~g~ 140 (265)
+.|-.++|+|++|+|||||++.|++.
T Consensus 222 r~~~kV~ivG~~nvGKSSLln~L~~~ 247 (462)
T 3geh_A 222 RTGLKVAIVGRPNVGKSSLLNAWSQS 247 (462)
T ss_dssp HHCEEEEEEECTTSSHHHHHHHHHHH
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHhCC
Confidence 34556999999999999999999885
No 478
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=94.71 E-value=0.011 Score=48.79 Aligned_cols=35 Identities=14% Similarity=0.187 Sum_probs=26.0
Q ss_pred HHHHHHHHHccCCCEEEEeCCCC-----CcCHHHHHHHHH
Q psy1503 220 ARINLARAVYKNADIYLLDDPLS-----AVDMHVGKHLFE 254 (265)
Q Consensus 220 qRialARal~~~~~illLDEp~s-----~LD~~~~~~i~~ 254 (265)
-.-.|++.+..++.+...+.|+. .+|....+++.+
T Consensus 165 l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (221)
T 3gj0_A 165 PFLWLARKLIGDPNLEFVAMPALAPPEVVMDPALAAQYEH 204 (221)
T ss_dssp HHHHHHHHHHTCTTCCEEECCCBCCCSSCCCHHHHHHHHH
T ss_pred HHHHHHHHHHhCcccccccCCCCCCCCCCcchhhhhhhHH
Confidence 34578888999998888887766 677777776643
No 479
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=94.71 E-value=0.017 Score=50.64 Aligned_cols=26 Identities=19% Similarity=0.350 Sum_probs=22.3
Q ss_pred CCcEEEEEcCCCChHHHHHHHHhcCc
Q psy1503 116 PKQLACIIGAIGAGKTSLLHIILNEL 141 (265)
Q Consensus 116 ~G~~~~ivG~~GsGKSTLl~~l~g~~ 141 (265)
+...+.+.||+|+|||+|.++|+..+
T Consensus 35 ~p~~lLl~GppGtGKT~la~aiA~~l 60 (293)
T 3t15_A 35 VPLILGIWGGKGQGKSFQCELVFRKM 60 (293)
T ss_dssp CCSEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 34567888999999999999998876
No 480
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=94.70 E-value=0.017 Score=53.28 Aligned_cols=23 Identities=13% Similarity=0.140 Sum_probs=19.8
Q ss_pred EEEEEcCCCChHHHHHHHHhcCc
Q psy1503 119 LACIIGAIGAGKTSLLHIILNEL 141 (265)
Q Consensus 119 ~~~ivG~~GsGKSTLl~~l~g~~ 141 (265)
.++|+|.+++|||||++.|.|.-
T Consensus 2 kI~ivG~pnvGKSTL~n~L~~~~ 24 (397)
T 1wxq_A 2 EIGVVGKPNVGKSTFFSAATLVD 24 (397)
T ss_dssp EEEEEECTTSSHHHHHHHHHC--
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 47999999999999999999864
No 481
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=94.68 E-value=0.014 Score=54.12 Aligned_cols=22 Identities=27% Similarity=0.555 Sum_probs=20.6
Q ss_pred EEEEEcCCCChHHHHHHHHhcC
Q psy1503 119 LACIIGAIGAGKTSLLHIILNE 140 (265)
Q Consensus 119 ~~~ivG~~GsGKSTLl~~l~g~ 140 (265)
.++|+|++|+|||||++.|.|.
T Consensus 5 ~V~ivG~~nvGKStL~n~l~~~ 26 (436)
T 2hjg_A 5 VVAIVGRPNVGKSTIFNRIAGE 26 (436)
T ss_dssp EEEEECSTTSSHHHHHHHHEEE
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999999885
No 482
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=93.69 E-value=0.0056 Score=49.96 Aligned_cols=22 Identities=27% Similarity=0.305 Sum_probs=19.5
Q ss_pred cEEEEEcCCCChHHHHHHHHhc
Q psy1503 118 QLACIIGAIGAGKTSLLHIILN 139 (265)
Q Consensus 118 ~~~~ivG~~GsGKSTLl~~l~g 139 (265)
=.++|+|+.|+|||||++.+.+
T Consensus 31 ~ki~v~G~~~~GKSsli~~l~~ 52 (204)
T 3th5_A 31 IKCVVVGDGAVGKTCLLISYTT 52 (204)
Confidence 4689999999999999988865
No 483
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=94.66 E-value=0.017 Score=52.00 Aligned_cols=29 Identities=21% Similarity=0.229 Sum_probs=25.4
Q ss_pred EEEcCCcEEEEEcCCCChHHHHHHHHhcC
Q psy1503 112 ITFKPKQLACIIGAIGAGKTSLLHIILNE 140 (265)
Q Consensus 112 l~i~~G~~~~ivG~~GsGKSTLl~~l~g~ 140 (265)
--+++|..+.|.||.|+|||||...++..
T Consensus 118 GGi~~gsviLI~GpPGsGKTtLAlqlA~~ 146 (331)
T 2vhj_A 118 GHRYASGMVIVTGKGNSGKTPLVHALGEA 146 (331)
T ss_dssp TEEEESEEEEEECSCSSSHHHHHHHHHHH
T ss_pred CCCCCCcEEEEEcCCCCCHHHHHHHHHHh
Confidence 46788999999999999999999988753
No 484
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=94.62 E-value=0.019 Score=49.73 Aligned_cols=27 Identities=22% Similarity=0.325 Sum_probs=23.1
Q ss_pred CCcEEEEEcCCCChHHHHHHHHhcCcC
Q psy1503 116 PKQLACIIGAIGAGKTSLLHIILNELR 142 (265)
Q Consensus 116 ~G~~~~ivG~~GsGKSTLl~~l~g~~~ 142 (265)
.+..+.|.||+|+||||+++.+...+.
T Consensus 49 ~~~~vll~G~~GtGKT~la~~la~~l~ 75 (310)
T 1ofh_A 49 TPKNILMIGPTGVGKTEIARRLAKLAN 75 (310)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHhC
Confidence 345788999999999999999988763
No 485
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=94.57 E-value=0.016 Score=55.60 Aligned_cols=24 Identities=25% Similarity=0.509 Sum_probs=22.0
Q ss_pred cEEEEEcCCCChHHHHHHHHhcCc
Q psy1503 118 QLACIIGAIGAGKTSLLHIILNEL 141 (265)
Q Consensus 118 ~~~~ivG~~GsGKSTLl~~l~g~~ 141 (265)
-.++|+|..|+|||||++.|+|.-
T Consensus 66 ~~V~vvG~~n~GKSTLIN~Llg~~ 89 (550)
T 2qpt_A 66 PMVLVAGQYSTGKTSFIQYLLEQE 89 (550)
T ss_dssp CEEEEEEBTTSCHHHHHHHHHTSC
T ss_pred cEEEEECCCCCCHHHHHHHHhCCc
Confidence 479999999999999999999864
No 486
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=94.56 E-value=0.015 Score=52.30 Aligned_cols=26 Identities=35% Similarity=0.427 Sum_probs=22.7
Q ss_pred CCcEEEEEcCCCChHHHHHHHHhcCc
Q psy1503 116 PKQLACIIGAIGAGKTSLLHIILNEL 141 (265)
Q Consensus 116 ~G~~~~ivG~~GsGKSTLl~~l~g~~ 141 (265)
++..+.+.||+|+||||+.++|...+
T Consensus 50 ~~~~vll~GppGtGKT~la~~ia~~~ 75 (363)
T 3hws_A 50 GKSNILLIGPTGSGKTLLAETLARLL 75 (363)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHc
Confidence 34568899999999999999998876
No 487
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=94.55 E-value=0.018 Score=49.52 Aligned_cols=27 Identities=30% Similarity=0.288 Sum_probs=23.0
Q ss_pred cCCcEEEEEcCCCChHHHHHHHHhcCc
Q psy1503 115 KPKQLACIIGAIGAGKTSLLHIILNEL 141 (265)
Q Consensus 115 ~~G~~~~ivG~~GsGKSTLl~~l~g~~ 141 (265)
++...+.|.||+|+|||||++.+....
T Consensus 62 ~~~~~vLl~G~~GtGKT~la~~ia~~~ 88 (272)
T 1d2n_A 62 TPLVSVLLEGPPHSGKTALAAKIAEES 88 (272)
T ss_dssp CSEEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHh
Confidence 445678999999999999999998753
No 488
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=94.53 E-value=0.022 Score=50.46 Aligned_cols=26 Identities=31% Similarity=0.505 Sum_probs=23.5
Q ss_pred CcEEEEEcCCCChHHHHHHHHhcCcC
Q psy1503 117 KQLACIIGAIGAGKTSLLHIILNELR 142 (265)
Q Consensus 117 G~~~~ivG~~GsGKSTLl~~l~g~~~ 142 (265)
+.-+.|.||+|+|||+|+++|.....
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~~~~ 177 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAHELS 177 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHH
Confidence 68899999999999999999987664
No 489
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=94.48 E-value=0.022 Score=50.48 Aligned_cols=27 Identities=30% Similarity=0.431 Sum_probs=23.3
Q ss_pred cCCcEEEEEcCCCChHHHHHHHHhcCc
Q psy1503 115 KPKQLACIIGAIGAGKTSLLHIILNEL 141 (265)
Q Consensus 115 ~~G~~~~ivG~~GsGKSTLl~~l~g~~ 141 (265)
.+..-+.|.||+|+|||+|++++....
T Consensus 49 ~~~~~vLl~GppGtGKT~la~aia~~~ 75 (322)
T 3eie_A 49 KPTSGILLYGPPGTGKSYLAKAVATEA 75 (322)
T ss_dssp CCCCEEEEECSSSSCHHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCcHHHHHHHHHHHH
Confidence 345679999999999999999998864
No 490
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=94.46 E-value=0.017 Score=56.01 Aligned_cols=25 Identities=20% Similarity=0.365 Sum_probs=22.3
Q ss_pred CcEEEEEcCCCChHHHHHHHHhcCc
Q psy1503 117 KQLACIIGAIGAGKTSLLHIILNEL 141 (265)
Q Consensus 117 G~~~~ivG~~GsGKSTLl~~l~g~~ 141 (265)
--.++|+|++|+|||||++.|.|..
T Consensus 38 ~~~VaivG~pnvGKStLiN~L~g~~ 62 (592)
T 1f5n_A 38 MVVVAIVGLYRTGKSYLMNKLAGKK 62 (592)
T ss_dssp EEEEEEEEBTTSSHHHHHHHHTTCS
T ss_pred CcEEEEECCCCCCHHHHHHhHcCCC
Confidence 3568999999999999999999964
No 491
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=94.46 E-value=0.033 Score=47.58 Aligned_cols=30 Identities=20% Similarity=0.114 Sum_probs=25.3
Q ss_pred cCCcEEEEEcCCCChHHHHHHHHhcCcCCC
Q psy1503 115 KPKQLACIIGAIGAGKTSLLHIILNELRIS 144 (265)
Q Consensus 115 ~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~ 144 (265)
..+..+.|.||+|+|||++++.|.......
T Consensus 27 ~~~~~vll~G~~GtGKt~la~~i~~~~~~~ 56 (265)
T 2bjv_A 27 PLDKPVLIIGERGTGKELIASRLHYLSSRW 56 (265)
T ss_dssp TSCSCEEEECCTTSCHHHHHHHHHHTSTTT
T ss_pred CCCCCEEEECCCCCcHHHHHHHHHHhcCcc
Confidence 345678999999999999999999876544
No 492
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=94.44 E-value=0.023 Score=50.85 Aligned_cols=26 Identities=35% Similarity=0.462 Sum_probs=23.0
Q ss_pred CCcEEEEEcCCCChHHHHHHHHhcCc
Q psy1503 116 PKQLACIIGAIGAGKTSLLHIILNEL 141 (265)
Q Consensus 116 ~G~~~~ivG~~GsGKSTLl~~l~g~~ 141 (265)
.+..+.|.||.|+|||||++.+....
T Consensus 44 ~~~~vll~G~~G~GKT~la~~l~~~~ 69 (384)
T 2qby_B 44 VKFSNLFLGLTGTGKTFVSKYIFNEI 69 (384)
T ss_dssp CCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHHH
Confidence 35689999999999999999998865
No 493
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=94.40 E-value=0.011 Score=55.38 Aligned_cols=35 Identities=23% Similarity=0.352 Sum_probs=27.1
Q ss_pred eceEEEcCCcE--EEEEcCCCChHHHHHHHHhcCcCC
Q psy1503 109 AVSITFKPKQL--ACIIGAIGAGKTSLLHIILNELRI 143 (265)
Q Consensus 109 ~isl~i~~G~~--~~ivG~~GsGKSTLl~~l~g~~~~ 143 (265)
.+.-.++.|.. +.|.||+|+|||||+++|......
T Consensus 40 ~L~~~i~~~~~~~vLL~GppGtGKTtlAr~ia~~~~~ 76 (447)
T 3pvs_A 40 PLPRAIEAGHLHSMILWGPPGTGKTTLAEVIARYANA 76 (447)
T ss_dssp HHHHHHHHTCCCEEEEECSTTSSHHHHHHHHHHHTTC
T ss_pred HHHHHHHcCCCcEEEEECCCCCcHHHHHHHHHHHhCC
Confidence 33444555554 899999999999999999987754
No 494
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=94.40 E-value=0.021 Score=51.55 Aligned_cols=32 Identities=19% Similarity=0.330 Sum_probs=25.7
Q ss_pred eceEEEcCCcEEEEEcCCCChHHHHHHHHhcC
Q psy1503 109 AVSITFKPKQLACIIGAIGAGKTSLLHIILNE 140 (265)
Q Consensus 109 ~isl~i~~G~~~~ivG~~GsGKSTLl~~l~g~ 140 (265)
.+.++++---.++|+|.+++|||||++.|++.
T Consensus 150 ~~~leLk~la~V~lvG~~nvGKSTLln~L~~~ 181 (342)
T 1lnz_A 150 YIVLELKVLADVGLVGFPSVGKSTLLSVVSSA 181 (342)
T ss_dssp EEEEEEECCCCEEEESSTTSSHHHHHHHSEEE
T ss_pred hHhhhhhhcCeeeeeCCCCCCHHHHHHHHHcC
Confidence 45555555556999999999999999999864
No 495
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=94.36 E-value=0.0038 Score=50.88 Aligned_cols=23 Identities=30% Similarity=0.460 Sum_probs=20.6
Q ss_pred EEEEEcCCCChHHHHHHHHhcCc
Q psy1503 119 LACIIGAIGAGKTSLLHIILNEL 141 (265)
Q Consensus 119 ~~~ivG~~GsGKSTLl~~l~g~~ 141 (265)
.++|+|+.|+|||||++.+.+..
T Consensus 35 ki~vvG~~~~GKSsli~~l~~~~ 57 (199)
T 3l0i_B 35 KLLLIGDSGVGKSCLLLRFADDT 57 (199)
T ss_dssp EEEEECCTTSCCTTTTTSSBCCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58999999999999999998754
No 496
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=94.33 E-value=0.022 Score=56.20 Aligned_cols=27 Identities=19% Similarity=0.365 Sum_probs=23.6
Q ss_pred cCCcEEEEEcCCCChHHHHHHHHhcCc
Q psy1503 115 KPKQLACIIGAIGAGKTSLLHIILNEL 141 (265)
Q Consensus 115 ~~G~~~~ivG~~GsGKSTLl~~l~g~~ 141 (265)
+++=.++|+|+.|+|||||++.|+|.-
T Consensus 67 ~~~~~V~VvG~~naGKSSLlNaLlg~~ 93 (695)
T 2j69_A 67 QGVFRLLVLGDMKRGKSTFLNALIGEN 93 (695)
T ss_dssp HCCEEEEEECCTTSCHHHHHHHHHTSS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 355679999999999999999999864
No 497
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=94.29 E-value=0.026 Score=50.92 Aligned_cols=27 Identities=26% Similarity=0.340 Sum_probs=23.8
Q ss_pred cCCcEEEEEcCCCChHHHHHHHHhcCc
Q psy1503 115 KPKQLACIIGAIGAGKTSLLHIILNEL 141 (265)
Q Consensus 115 ~~G~~~~ivG~~GsGKSTLl~~l~g~~ 141 (265)
.+...+.|.||+|+|||||+++++...
T Consensus 115 ~~~~~vLl~GppGtGKT~la~aia~~~ 141 (357)
T 3d8b_A 115 GPPKGILLFGPPGTGKTLIGKCIASQS 141 (357)
T ss_dssp SCCSEEEEESSTTSSHHHHHHHHHHHT
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHc
Confidence 456789999999999999999998865
No 498
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=94.28 E-value=0.024 Score=54.73 Aligned_cols=28 Identities=14% Similarity=0.233 Sum_probs=23.9
Q ss_pred cCCcEEEEEcCCCChHHHHHHHHhcCcC
Q psy1503 115 KPKQLACIIGAIGAGKTSLLHIILNELR 142 (265)
Q Consensus 115 ~~G~~~~ivG~~GsGKSTLl~~l~g~~~ 142 (265)
++|.++.|+|++||||||+.+.|...+.
T Consensus 394 q~~~~I~l~GlsGSGKSTiA~~La~~L~ 421 (573)
T 1m8p_A 394 TQGFTIFLTGYMNSGKDAIARALQVTLN 421 (573)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred ccceEEEeecCCCCCHHHHHHHHHHHhc
Confidence 3567899999999999999999977653
No 499
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=94.24 E-value=0.038 Score=50.60 Aligned_cols=46 Identities=20% Similarity=0.213 Sum_probs=32.5
Q ss_pred EEEEEcCCCChHHHHHHHHhcCc-----------CCCccEEEEcCeEEEEecCCCCc
Q psy1503 119 LACIIGAIGAGKTSLLHIILNEL-----------RISSGKVSLGGTVSYASQEPWIF 164 (265)
Q Consensus 119 ~~~ivG~~GsGKSTLl~~l~g~~-----------~~~~G~i~~~g~i~~v~Q~~~l~ 164 (265)
.++|||.+-+|||||++.|.|.- .|..|.+.+++.--.+-..|-+.
T Consensus 74 ~V~ivG~PNvGKSTL~n~Lt~~~~~v~~~pftT~~~~~g~~~~~~~~i~l~D~pGl~ 130 (376)
T 4a9a_A 74 SVGFVGFPSVGKSTLLSKLTGTESEAAEYEFTTLVTVPGVIRYKGAKIQMLDLPGII 130 (376)
T ss_dssp EEEEECCCCHHHHHHHHHHHSBCCCGGGTCSSCCCEEEEEEEETTEEEEEEECGGGC
T ss_pred eEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeeeeeEEEEeCCcEEEEEeCCCcc
Confidence 68999999999999999999854 23446777776422333444444
No 500
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=94.23 E-value=0.028 Score=49.30 Aligned_cols=26 Identities=38% Similarity=0.507 Sum_probs=22.9
Q ss_pred CCcEEEEEcCCCChHHHHHHHHhcCc
Q psy1503 116 PKQLACIIGAIGAGKTSLLHIILNEL 141 (265)
Q Consensus 116 ~G~~~~ivG~~GsGKSTLl~~l~g~~ 141 (265)
.|..+.|.||.|+|||||++.+....
T Consensus 30 ~~~~v~i~G~~G~GKT~Ll~~~~~~~ 55 (350)
T 2qen_A 30 NYPLTLLLGIRRVGKSSLLRAFLNER 55 (350)
T ss_dssp HCSEEEEECCTTSSHHHHHHHHHHHS
T ss_pred cCCeEEEECCCcCCHHHHHHHHHHHc
Confidence 36899999999999999999988654
Done!