RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy1503
(265 letters)
>gnl|CDD|213217 cd03250, ABCC_MRP_domain1, ATP-binding cassette domain 1 of
multidrug resistance-associated protein, subfamily C.
This subfamily is also known as MRP (multidrug
resistance-associated protein). Some of the MRP members
have five additional transmembrane segments in their
N-terminus, but the function of these additional
membrane-spanning domains is not clear. The MRP was
found in the multidrug-resisting lung cancer cell in
which p-glycoprotein was not overexpressed. MRP exports
glutathione by drug stimulation, as well as, certain
substrates in conjugated forms with anions, such as
glutathione, glucuronate, and sulfate.
Length = 204
Score = 267 bits (684), Expect = 6e-91
Identities = 91/173 (52%), Positives = 123/173 (71%), Gaps = 2/173 (1%)
Query: 89 VSLDNVTAQWS--LQNADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSG 146
+S+++ + W Q TL +++ +L I+G +G+GK+SLL +L EL SG
Sbjct: 1 ISVEDASFTWDSGEQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSG 60
Query: 147 KVSLGGTVSYASQEPWIFAATIRQNILFGLPYLRRRYADVIRVCALQDDFDSLPNGDFTV 206
VS+ G+++Y SQEPWI TIR+NILFG P+ RY VI+ CAL+ D + LP+GD T
Sbjct: 61 SVSVPGSIAYVSQEPWIQNGTIRENILFGKPFDEERYEKVIKACALEPDLEILPDGDLTE 120
Query: 207 VGERGASLSGGQKARINLARAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISG 259
+GE+G +LSGGQK RI+LARAVY +ADIYLLDDPLSAVD HVG+H+FE+CI G
Sbjct: 121 IGEKGINLSGGQKQRISLARAVYSDADIYLLDDPLSAVDAHVGRHIFENCILG 173
>gnl|CDD|215595 PLN03130, PLN03130, ABC transporter C family member; Provisional.
Length = 1622
Score = 198 bits (506), Expect = 5e-58
Identities = 112/298 (37%), Positives = 147/298 (49%), Gaps = 42/298 (14%)
Query: 2 YAWEKPFTALVDQARKIEIGVVQKTSYLRGLYMTFNLFT-TRMALFCTLTSFIFF---GG 57
YAWE F + V R E+ +K L FN F + + T+ SF F GG
Sbjct: 495 YAWENSFQSKVQTVRDDELSWFRKAQLLS----AFNSFILNSIPVLVTVVSFGVFTLLGG 550
Query: 58 RLSTDR---------VLNF------------------------LLLGEHEPRKINSVHSN 84
L+ R VL F LLL E N
Sbjct: 551 DLTPARAFTSLSLFAVLRFPLFMLPNLITQAVNANVSLKRLEELLLAEERVLLPNPPLEP 610
Query: 85 GKGHVSLDNVTAQWSLQNADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNEL-RI 143
G +S+ N W + TL+ +++ L I+G+ G GKTSL+ +L EL
Sbjct: 611 GLPAISIKNGYFSWDSKAERPTLSNINLDVPVGSLVAIVGSTGEGKTSLISAMLGELPPR 670
Query: 144 SSGKVSLGGTVSYASQEPWIFAATIRQNILFGLPYLRRRYADVIRVCALQDDFDSLPNGD 203
S V + GTV+Y Q WIF AT+R NILFG P+ RY I V ALQ D D LP GD
Sbjct: 671 SDASVVIRGTVAYVPQVSWIFNATVRDNILFGSPFDPERYERAIDVTALQHDLDLLPGGD 730
Query: 204 FTVVGERGASLSGGQKARINLARAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGCL 261
T +GERG ++SGGQK R+++ARAVY N+D+Y+ DDPLSA+D HVG+ +F+ CI L
Sbjct: 731 LTEIGERGVNISGGQKQRVSMARAVYSNSDVYIFDDPLSALDAHVGRQVFDKCIKDEL 788
Score = 52.0 bits (125), Expect = 1e-07
Identities = 41/155 (26%), Positives = 73/155 (47%), Gaps = 19/155 (12%)
Query: 107 LNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSLGG-------------T 153
L+ +S P + I+G GAGK+S+L+ + + + G++ + G
Sbjct: 1255 LHGLSFEISPSEKVGIVGRTGAGKSSMLNALFRIVELERGRILIDGCDISKFGLMDLRKV 1314
Query: 154 VSYASQEPWIFAATIRQNILFGLPYLRRRYADV---IRVCALQDDFDSLPNGDFTVVGER 210
+ Q P +F+ T+R N+ P+ AD+ + L+D G V E
Sbjct: 1315 LGIIPQAPVLFSGTVRFNLD---PFNEHNDADLWESLERAHLKDVIRRNSLGLDAEVSEA 1371
Query: 211 GASLSGGQKARINLARAVYKNADIYLLDDPLSAVD 245
G + S GQ+ ++LARA+ + + I +LD+ +AVD
Sbjct: 1372 GENFSVGQRQLLSLARALLRRSKILVLDEATAAVD 1406
>gnl|CDD|188098 TIGR00957, MRP_assoc_pro, multi drug resistance-associated protein
(MRP). This model describes multi drug
resistance-associated protein (MRP) in eukaryotes. The
multidrug resistance-associated protein is an integral
membrane protein that causes multidrug resistance when
overexpressed in mammalian cells. It belongs to ABC
transporter superfamily. The protein topology and
function was experimentally demonstrated by epitope
tagging and immunofluorescence. Insertion of tags in the
critical regions associated with drug efflux, abrogated
its function. The C-terminal domain seem to highly
conserved [Transport and binding proteins, Other].
Length = 1522
Score = 189 bits (481), Expect = 1e-54
Identities = 101/295 (34%), Positives = 150/295 (50%), Gaps = 39/295 (13%)
Query: 1 MYAWEKPFTALVDQARKIEIGVVQKTSYLRGLYMTFNLFTTRMALFCTLTSFIFFGGR-- 58
+YAWE F V+ R+ E+ V++K++YL + + T + T ++
Sbjct: 511 LYAWELAFLDKVEGIRQEELKVLKKSAYLHAVGTFTWVCTPFLVALITFAVYVTVDENNI 570
Query: 59 ----------------------------------LSTDRVLNFLLLGEHEPRKIN--SVH 82
+S R+ FL E EP I ++
Sbjct: 571 LDAEKAFVSLALFNILRFPLNILPMVISSIVQASVSLKRLRIFLSHEELEPDSIERRTIK 630
Query: 83 SNGKGHVSLDNVTAQWSLQNADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELR 142
+++ N T W+ ++ TLN ++ + L ++G +G GK+SLL +L E+
Sbjct: 631 PGEGNSITVHNATFTWA-RDLPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMD 689
Query: 143 ISSGKVSLGGTVSYASQEPWIFAATIRQNILFGLPYLRRRYADVIRVCALQDDFDSLPNG 202
G V + G+V+Y Q+ WI ++R+NILFG + Y V+ CAL D + LP+G
Sbjct: 690 KVEGHVHMKGSVAYVPQQAWIQNDSLRENILFGKALNEKYYQQVLEACALLPDLEILPSG 749
Query: 203 DFTVVGERGASLSGGQKARINLARAVYKNADIYLLDDPLSAVDMHVGKHLFEDCI 257
D T +GE+G +LSGGQK R++LARAVY NADIYL DDPLSAVD HVGKH+FE I
Sbjct: 750 DRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFEHVI 804
Score = 55.7 bits (134), Expect = 9e-09
Identities = 51/194 (26%), Positives = 91/194 (46%), Gaps = 27/194 (13%)
Query: 86 KGHVSLDNVTAQWSLQNADLTLNAVSITFKPKQLACIIGAIGAGKTSLL----------- 134
+G V N ++ ++ DL L +++T + I+G GAGK+SL
Sbjct: 1282 RGRVEFRNYCLRYR-EDLDLVLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRINESAE 1340
Query: 135 -HIILNELRISS-GKVSLGGTVSYASQEPWIFAATIRQNILFGLPYLRRRYADV---IRV 189
II++ L I+ G L ++ Q+P +F+ ++R N+ P+ + +V + +
Sbjct: 1341 GEIIIDGLNIAKIGLHDLRFKITIIPQDPVLFSGSLRMNLD---PFSQYSDEEVWWALEL 1397
Query: 190 CALQDDFDSLPNGDFTVVGERGASLSGGQKARINLARAVYKNADIYLLDDPLSAVDMHVG 249
L+ +LP+ E G +LS GQ+ + LARA+ + I +LD+ +AVD+
Sbjct: 1398 AHLKTFVSALPDKLDHECAEGGENLSVGQRQLVCLARALLRKTKILVLDEATAAVDLETD 1457
Query: 250 KHL-------FEDC 256
+ FEDC
Sbjct: 1458 NLIQSTIRTQFEDC 1471
>gnl|CDD|213258 cd03291, ABCC_CFTR1, ATP-binding cassette domain of the cystic
fibrosis transmembrane regulator, subfamily C. The CFTR
subfamily domain 1. The cystic fibrosis transmembrane
regulator (CFTR), the product of the gene mutated in
patients with cystic fibrosis, has adapted the ABC
transporter structural motif to form a tightly regulated
anion channel at the apical surface of many epithelia.
Use of the term assembly of a functional ion channel
implies the coming together of subunits, or at least
smaller not-yet functional components of the active
whole. In fact, on the basis of current knowledge only
the CFTR polypeptide itself is required to form an ATP-
and protein kinase A-dependent low-conductance chloride
channel of the type present in the apical membrane of
many epithelial cells. CFTR displays the typical
organization (IM-ABC)2 and carries a characteristic
hydrophilic R-domain that separates IM1-ABC1 from
IM2-ABC2.
Length = 282
Score = 169 bits (430), Expect = 1e-51
Identities = 75/179 (41%), Positives = 111/179 (62%), Gaps = 5/179 (2%)
Query: 79 NSVHSNGKGHVSLDNVTAQWSLQNADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIIL 138
+ HS+ ++ N L A + L +++ + ++ I G+ G+GKTSLL +IL
Sbjct: 30 DRKHSSDDNNLFFSN----LCLVGAPV-LKNINLKIEKGEMLAITGSTGSGKTSLLMLIL 84
Query: 139 NELRISSGKVSLGGTVSYASQEPWIFAATIRQNILFGLPYLRRRYADVIRVCALQDDFDS 198
EL S GK+ G +S++SQ WI TI++NI+FG+ Y RY V++ C L++D
Sbjct: 85 GELEPSEGKIKHSGRISFSSQFSWIMPGTIKENIIFGVSYDEYRYKSVVKACQLEEDITK 144
Query: 199 LPNGDFTVVGERGASLSGGQKARINLARAVYKNADIYLLDDPLSAVDMHVGKHLFEDCI 257
P D TV+GE G +LSGGQ+ARI+LARAVYK+AD+YLLD P +D+ K +FE C+
Sbjct: 145 FPEKDNTVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEKEIFESCV 203
>gnl|CDD|215640 PLN03232, PLN03232, ABC transporter C family member; Provisional.
Length = 1495
Score = 175 bits (444), Expect = 1e-49
Identities = 105/294 (35%), Positives = 143/294 (48%), Gaps = 42/294 (14%)
Query: 2 YAWEKPFTALVDQARKIEIGVVQKTSYLRGLYMTFNLFT-TRMALFCTLTSF---IFFGG 57
YAWEK F + + R E+ +K L FN F + + TL SF + GG
Sbjct: 495 YAWEKSFESRIQGIRNEELSWFRKAQLL----SAFNSFILNSIPVVVTLVSFGVFVLLGG 550
Query: 58 RLSTDR---------VLNF------------------------LLLGEHEPRKINSVHSN 84
L+ R VL LLL E N
Sbjct: 551 DLTPARAFTSLSLFAVLRSPLNMLPNLLSQVVNANVSLQRIEELLLSEERILAQNPPLQP 610
Query: 85 GKGHVSLDNVTAQWSLQNADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNEL-RI 143
G +S+ N W + + TL+ +++ L I+G G GKTSL+ +L EL
Sbjct: 611 GAPAISIKNGYFSWDSKTSKPTLSDINLEIPVGSLVAIVGGTGEGKTSLISAMLGELSHA 670
Query: 144 SSGKVSLGGTVSYASQEPWIFAATIRQNILFGLPYLRRRYADVIRVCALQDDFDSLPNGD 203
+ V + G+V+Y Q WIF AT+R+NILFG + RY I V ALQ D D LP D
Sbjct: 671 ETSSVVIRGSVAYVPQVSWIFNATVRENILFGSDFESERYWRAIDVTALQHDLDLLPGRD 730
Query: 204 FTVVGERGASLSGGQKARINLARAVYKNADIYLLDDPLSAVDMHVGKHLFEDCI 257
T +GERG ++SGGQK R+++ARAVY N+DIY+ DDPLSA+D HV +F+ C+
Sbjct: 731 LTEIGERGVNISGGQKQRVSMARAVYSNSDIYIFDDPLSALDAHVAHQVFDSCM 784
Score = 58.1 bits (140), Expect = 2e-09
Identities = 41/158 (25%), Positives = 76/158 (48%), Gaps = 19/158 (12%)
Query: 107 LNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSLGG-------------T 153
L+ +S P + ++G GAGK+S+L+ + + + G++ +
Sbjct: 1252 LHGLSFFVSPSEKVGVVGRTGAGKSSMLNALFRIVELEKGRIMIDDCDVAKFGLTDLRRV 1311
Query: 154 VSYASQEPWIFAATIRQNILFGLPYLRRRYADV---IRVCALQDDFDSLPNGDFTVVGER 210
+S Q P +F+ T+R NI P+ AD+ + ++D D P G V E
Sbjct: 1312 LSIIPQSPVLFSGTVRFNID---PFSEHNDADLWEALERAHIKDVIDRNPFGLDAEVSEG 1368
Query: 211 GASLSGGQKARINLARAVYKNADIYLLDDPLSAVDMHV 248
G + S GQ+ ++LARA+ + + I +LD+ ++VD+
Sbjct: 1369 GENFSVGQRQLLSLARALLRRSKILVLDEATASVDVRT 1406
>gnl|CDD|240327 PTZ00243, PTZ00243, ABC transporter; Provisional.
Length = 1560
Score = 171 bits (436), Expect = 1e-48
Identities = 73/155 (47%), Positives = 102/155 (65%)
Query: 107 LNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSLGGTVSYASQEPWIFAA 166
L VS++ +L ++GA G+GK++LL +L++ IS G+V +++Y Q+ WI A
Sbjct: 676 LRDVSVSVPRGKLTVVLGATGSGKSTLLQSLLSQFEISEGRVWAERSIAYVPQQAWIMNA 735
Query: 167 TIRQNILFGLPYLRRRYADVIRVCALQDDFDSLPNGDFTVVGERGASLSGGQKARINLAR 226
T+R NILF R AD +RV L+ D L G T +GE+G +LSGGQKAR++LAR
Sbjct: 736 TVRGNILFFDEEDAARLADAVRVSQLEADLAQLGGGLETEIGEKGVNLSGGQKARVSLAR 795
Query: 227 AVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGCL 261
AVY N D+YLLDDPLSA+D HVG+ + E+C G L
Sbjct: 796 AVYANRDVYLLDDPLSALDAHVGERVVEECFLGAL 830
Score = 46.3 bits (110), Expect = 1e-05
Identities = 45/155 (29%), Positives = 73/155 (47%), Gaps = 19/155 (12%)
Query: 105 LTLNAVSITFKPKQLACIIGAIGAGKTSLL------------HIILNELRISS-GKVSLG 151
L L VS P++ I+G G+GK++LL I +N I + G L
Sbjct: 1324 LVLRGVSFRIAPREKVGIVGRTGSGKSTLLLTFMRMVEVCGGEIRVNGREIGAYGLRELR 1383
Query: 152 GTVSYASQEPWIFAATIRQNILFGLPYLRRRYADV---IRVCALQDDFDSLPNGDFTVVG 208
S Q+P +F T+RQN+ P+L A+V + + L++ S G + V
Sbjct: 1384 RQFSMIPQDPVLFDGTVRQNV---DPFLEASSAEVWAALELVGLRERVASESEGIDSRVL 1440
Query: 209 ERGASLSGGQKARINLARAVYKNADIYLLDDPLSA 243
E G++ S GQ+ + +ARA+ K ++L D +A
Sbjct: 1441 EGGSNYSVGQRQLMCMARALLKKGSGFILMDEATA 1475
>gnl|CDD|233335 TIGR01271, CFTR_protein, cystic fibrosis transmembrane conductor
regulator (CFTR). The model describes the cystis
fibrosis transmembrane conductor regulator (CFTR) in
eukaryotes. The principal role of this protein is
chloride ion conductance. The protein is predicted to
consist of 12 transmembrane domains. Mutations or
lesions in the genetic loci have been linked to the
aetiology of asthma, bronchiectasis, chronic obstructive
pulmonary disease etc. Disease-causing mutations have
been studied by 36Cl efflux assays in vitro cell
cultures and electrophysiology, all of which point to
the impairment of chloride channel stability and not the
biosynthetic processing per se [Transport and binding
proteins, Anions].
Length = 1490
Score = 171 bits (434), Expect = 2e-48
Identities = 98/327 (29%), Positives = 151/327 (46%), Gaps = 69/327 (21%)
Query: 2 YAWEKPFTALVDQARKIEIGVVQKTSYLRGLYMTFNLFTTRMALFCTLTSFIFFGG---- 57
Y WE+ ++ R+ E+ + +K +YLR Y + F+ +F ++ + G
Sbjct: 276 YCWEEAMEKIIKNIRQDELKLTRKIAYLRYFYSSAFFFSGFFVVFLSVVPYALIKGIILR 335
Query: 58 ------------RLSTDRVL------------------NFLLLGEHEPRKINSVHSNGKG 87
R++ R +FL E++ + N +
Sbjct: 336 RIFTTISYCIVLRMTVTRQFPGAIQTWYDSLGAITKIQDFLCKEEYKTLEYNLTTT---- 391
Query: 88 HVSLDNVTAQWS------------------LQNADL-------------TLNAVSITFKP 116
V + NVTA W N D L +S +
Sbjct: 392 EVEMVNVTASWDEGIGELFEKIKQNNKARKQPNGDDGLFFSNFSLYVTPVLKNISFKLEK 451
Query: 117 KQLACIIGAIGAGKTSLLHIILNELRISSGKVSLGGTVSYASQEPWIFAATIRQNILFGL 176
QL + G+ G+GK+SLL +I+ EL S GK+ G +S++ Q WI TI+ NI+FGL
Sbjct: 452 GQLLAVAGSTGSGKSSLLMMIMGELEPSEGKIKHSGRISFSPQTSWIMPGTIKDNIIFGL 511
Query: 177 PYLRRRYADVIRVCALQDDFDSLPNGDFTVVGERGASLSGGQKARINLARAVYKNADIYL 236
Y RY VI+ C L++D P D TV+GE G +LSGGQ+ARI+LARAVYK+AD+YL
Sbjct: 512 SYDEYRYTSVIKACQLEEDIALFPEKDKTVLGEGGITLSGGQRARISLARAVYKDADLYL 571
Query: 237 LDDPLSAVDMHVGKHLFEDCISGCLTS 263
LD P + +D+ K +FE C+ +++
Sbjct: 572 LDSPFTHLDVVTEKEIFESCLCKLMSN 598
Score = 62.2 bits (151), Expect = 6e-11
Identities = 59/240 (24%), Positives = 103/240 (42%), Gaps = 50/240 (20%)
Query: 60 STDRVLNFLLLGEHEPRKINSVHSN------------------GKGHVSLDNVTAQWSLQ 101
S RV F+ L + EPR G + + +TA+++ +
Sbjct: 1171 SVSRVFKFIDLPQEEPRPSGGGGKYQLSTVLVIENPHAQKCWPSGGQMDVQGLTAKYT-E 1229
Query: 102 NADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSLGGTVSYAS--- 158
L +S + + Q ++G G+GK++LL +L L + G++ + G VS+ S
Sbjct: 1230 AGRAVLQDLSFSVEGGQRVGLLGRTGSGKSTLLSALL-RLLSTEGEIQIDG-VSWNSVTL 1287
Query: 159 -----------QEPWIFAATIRQNILFGLPYLRRRYADVIRVC---ALQDDFDSLPNG-D 203
Q+ +IF+ T R+N+ PY + ++ +V L+ + P+ D
Sbjct: 1288 QTWRKAFGVIPQKVFIFSGTFRKNLD---PYEQWSDEEIWKVAEEVGLKSVIEQFPDKLD 1344
Query: 204 FTVVGERGASLSGGQKARINLARAVYKNADIYLLDDPLSAVD-------MHVGKHLFEDC 256
F +V + G LS G K + LAR++ A I LLD+P + +D K F +C
Sbjct: 1345 FVLV-DGGYVLSNGHKQLMCLARSILSKAKILLLDEPSAHLDPVTLQIIRKTLKQSFSNC 1403
>gnl|CDD|213257 cd03290, ABCC_SUR1_N, ATP-binding cassette domain of the
sulfonylurea receptor, subfamily C. The SUR domain 1.
The sulfonylurea receptor SUR is an ATP transporter of
the ABCC/MRP family with tandem ATPase binding domains.
Unlike other ABC proteins, it has no intrinsic transport
function, neither active nor passive, but associates
with the potassium channel proteins Kir6.1 or Kir6.2 to
form the ATP-sensitive potassium (K(ATP)) channel.
Within the channel complex, SUR serves as a regulatory
subunit that fine-tunes the gating of Kir6.x in response
to alterations in cellular metabolism. It constitutes a
major pharmaceutical target as it binds numerous drugs,
K(ATP) channel openers and blockers, capable of up- or
down-regulating channel activity.
Length = 218
Score = 153 bits (388), Expect = 3e-46
Identities = 73/169 (43%), Positives = 104/169 (61%), Gaps = 17/169 (10%)
Query: 106 TLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSLG-------------- 151
TL+ ++I QL I+G +G GK+SLL IL E++ GKV
Sbjct: 16 TLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEGKVHWSNKNESEPSFEATRS 75
Query: 152 ---GTVSYASQEPWIFAATIRQNILFGLPYLRRRYADVIRVCALQDDFDSLPNGDFTVVG 208
+V+YA+Q+PW+ AT+ +NI FG P+ ++RY V C+LQ D D LP GD T +G
Sbjct: 76 RNRYSVAYAAQKPWLLNATVEENITFGSPFNKQRYKAVTDACSLQPDIDLLPFGDQTEIG 135
Query: 209 ERGASLSGGQKARINLARAVYKNADIYLLDDPLSAVDMHVGKHLFEDCI 257
ERG +LSGGQ+ RI +ARA+Y+N +I LDDP SA+D+H+ HL ++ I
Sbjct: 136 ERGINLSGGQRQRICVARALYQNTNIVFLDDPFSALDIHLSDHLMQEGI 184
>gnl|CDD|224055 COG1132, MdlB, ABC-type multidrug transport system, ATPase and
permease components [Defense mechanisms].
Length = 567
Score = 131 bits (332), Expect = 4e-35
Identities = 63/237 (26%), Positives = 109/237 (45%), Gaps = 28/237 (11%)
Query: 31 GLYMTFNLFTTRMALFCTLTSF-----IFFGGRLSTDRVLNFLLLGEHEPRKINSVHSNG 85
G F L+ R L + + + +R+ L E E +
Sbjct: 269 GALAAFILYLLR--LLTPILQLGEVVSLLQRASAAAERLFELLDE-EPEVEDPPDPLKDT 325
Query: 86 KGHVSLDNVTAQWSLQNADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISS 145
G + +NV+ +S L +S + +P + I+G G+GK++L+ ++L +S
Sbjct: 326 IGSIEFENVS--FSYPGKKPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDPTS 383
Query: 146 GKVSLGGT-------------VSYASQEPWIFAATIRQNILFGLPYLRRRYADVIRVCAL 192
G++ + G + SQ+P +F+ TIR+NI G P ++ L
Sbjct: 384 GEILIDGIDIRDISLDSLRKRIGIVSQDPLLFSGTIRENIALGRPDATD--EEIEEALKL 441
Query: 193 ---QDDFDSLPNGDFTVVGERGASLSGGQKARINLARAVYKNADIYLLDDPLSAVDM 246
+ +LP+G T+VGERG +LSGGQ+ R+ +ARA+ +N I +LD+ SA+D
Sbjct: 442 ANAHEFIANLPDGYDTIVGERGVNLSGGQRQRLAIARALLRNPPILILDEATSALDT 498
>gnl|CDD|225183 COG2274, SunT, ABC-type bacteriocin/lantibiotic exporters, contain
an N-terminal double-glycine peptidase domain [Defense
mechanisms].
Length = 709
Score = 125 bits (317), Expect = 9e-33
Identities = 65/233 (27%), Positives = 109/233 (46%), Gaps = 23/233 (9%)
Query: 33 YMTFNLFTTRMA-LFCTLTSFIFFGGRLSTDRVLNFLLLG-EHEPRKINSVHSNGKGHVS 90
M F + + L T F +++ +R+ + L E E K +G +
Sbjct: 416 NMLAGYFISPITRLSQLWTDFQQA--KVALERLGDILDTPPEQEGDKTLIHLPKLQGEIE 473
Query: 91 LDNVTAQWSLQNADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSL 150
+NV+ ++ + L +S+ P + I+G G+GK++LL ++L + G++ L
Sbjct: 474 FENVSFRYG-PDDPPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQQGRILL 532
Query: 151 GGT-------------VSYASQEPWIFAATIRQNILFGLPYLRRRYADVIRVC---ALQD 194
G V Y Q+P++F+ +IR+NI G P ++I +
Sbjct: 533 DGVDLNDIDLASLRRQVGYVLQDPFLFSGSIRENIALGNPEAT--DEEIIEAAQLAGAHE 590
Query: 195 DFDSLPNGDFTVVGERGASLSGGQKARINLARAVYKNADIYLLDDPLSAVDMH 247
++LP G T VGE GA+LSGGQ+ R+ LARA+ I LLD+ SA+D
Sbjct: 591 FIENLPMGYDTPVGEGGANLSGGQRQRLALARALLSKPKILLLDEATSALDPE 643
>gnl|CDD|213216 cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassette domain of a
mitochondrial protein MTABC3 and related proteins.
MTABC3 (also known as ABCB6) is a mitochondrial
ATP-binding cassette protein involved in iron
homeostasis and one of four ABC transporters expressed
in the mitochondrial inner membrane, the other three
being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast
MDL1 (multidrug resistance-like protein 1) and MDL2
(multidrug resistance-like protein 2) transporters are
also included in this CD. MDL1 is an ATP-dependent
permease that acts as a high-copy suppressor of ATM1 and
is thought to have a role in resistance to oxidative
stress. Interestingly, subfamily B is more closely
related to the carboxyl-terminal component of subfamily
C than the two halves of ABCC molecules are with one
another.
Length = 238
Score = 116 bits (293), Expect = 1e-31
Identities = 56/155 (36%), Positives = 84/155 (54%), Gaps = 18/155 (11%)
Query: 107 LNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSLGGT------------- 153
L +S+T P + ++G+ G GK++++ ++ +SG++ L G
Sbjct: 19 LKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEILLDGVDIRDLNLRWLRSQ 78
Query: 154 VSYASQEPWIFAATIRQNILFGLPYLRRRYADVIRVC--ALQDDF-DSLPNGDFTVVGER 210
+ SQEP +F TI +NI +G P +V A DF SLP+G T+VGER
Sbjct: 79 IGLVSQEPVLFDGTIAENIRYGKPD--ATDEEVEEAAKKANIHDFIMSLPDGYDTLVGER 136
Query: 211 GASLSGGQKARINLARAVYKNADIYLLDDPLSAVD 245
G+ LSGGQK RI +ARA+ +N I LLD+ SA+D
Sbjct: 137 GSQLSGGQKQRIAIARALLRNPKILLLDEATSALD 171
>gnl|CDD|213212 cd03245, ABCC_bacteriocin_exporters, ATP-binding cassette domain of
bacteriocin exporters, subfamily C. Many
non-lantibiotic bacteriocins of lactic acid bacteria are
produced as precursors which have N-terminal leader
peptides that share similarities in amino acid sequence
and contain a conserved processing site of two glycine
residues in positions -1 and -2. A dedicated ATP-binding
cassette (ABC) transporter is responsible for the
proteolytic cleavage of the leader peptides and
subsequent translocation of the bacteriocins across the
cytoplasmic membrane.
Length = 220
Score = 114 bits (288), Expect = 4e-31
Identities = 60/182 (32%), Positives = 91/182 (50%), Gaps = 15/182 (8%)
Query: 87 GHVSLDNVTAQWSLQNADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSG 146
G + NV+ + Q L+ VS+T + + IIG +G+GK++LL ++ + +SG
Sbjct: 1 GRIEFRNVSFSYPNQEIP-ALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSG 59
Query: 147 KVSLGGT-------------VSYASQEPWIFAATIRQNILFGLPYLR-RRYADVIRVCAL 192
V L GT + Y Q+ +F T+R NI G P R + +
Sbjct: 60 SVLLDGTDIRQLDPADLRRNIGYVPQDVTLFYGTLRDNITLGAPLADDERILRAAELAGV 119
Query: 193 QDDFDSLPNGDFTVVGERGASLSGGQKARINLARAVYKNADIYLLDDPLSAVDMHVGKHL 252
D + PNG +GERG LSGGQ+ + LARA+ + I LLD+P SA+DM+ + L
Sbjct: 120 TDFVNKHPNGLDLQIGERGRGLSGGQRQAVALARALLNDPPILLLDEPTSAMDMNSEERL 179
Query: 253 FE 254
E
Sbjct: 180 KE 181
>gnl|CDD|234189 TIGR03375, type_I_sec_LssB, type I secretion system ATPase, LssB
family. Type I protein secretion is a system in some
Gram-negative bacteria to export proteins (often
proteases) across both inner and outer membranes to the
extracellular medium. This is one of three proteins of
the type I secretion apparatus. Targeted proteins are
not cleaved at the N-terminus, but rather carry signals
located toward the extreme C-terminus to direct type I
secretion. This model is related to models TIGR01842 and
TIGR01846, and to bacteriocin ABC transporters that
cleave their substrates during export [Protein fate,
Protein and peptide secretion and trafficking, Cellular
processes, Pathogenesis].
Length = 694
Score = 119 bits (301), Expect = 1e-30
Identities = 60/178 (33%), Positives = 93/178 (52%), Gaps = 21/178 (11%)
Query: 86 KGHVSLDNVTAQWSLQNAD-LTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRIS 144
+G + NV+ + + L+ VS+T +P + IIG IG+GK++LL ++L + +
Sbjct: 461 QGEIEFRNVSFAY--PGQETPALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPT 518
Query: 145 SGKVSLGGT-------------VSYASQEPWIFAATIRQNILFGLPYLRRRYADVIRVCA 191
G V L G + Y Q+P +F T+R NI G PY +++R
Sbjct: 519 EGSVLLDGVDIRQIDPADLRRNIGYVPQDPRLFYGTLRDNIALGAPYADD--EEILRAAE 576
Query: 192 LQ--DDF-DSLPNGDFTVVGERGASLSGGQKARINLARAVYKNADIYLLDDPLSAVDM 246
L +F P+G +GERG SLSGGQ+ + LARA+ ++ I LLD+P SA+D
Sbjct: 577 LAGVTEFVRRHPDGLDMQIGERGRSLSGGQRQAVALARALLRDPPILLLDEPTSAMDN 634
>gnl|CDD|234033 TIGR02857, CydD, thiol reductant ABC exporter, CydD subunit. The
gene pair cydCD encodes an ABC-family transporter in
which each gene contains an N-terminal membrane-spanning
domain (pfam00664) and a C-terminal ATP-binding domain
(pfam00005). In E. coli these genes were discovered as
mutants which caused the terminal heme-copper oxidase
complex cytochrome bd to fail to assemble. Recent work
has shown that the transporter is involved in export of
redox-active thiol compounds such as cysteine and
glutathione. The linkage to assembly of the cytochrome
bd complex is further supported by the conserved operon
structure found outside the gammaproteobacteria
(cydABCD) containing both the transporter and oxidase
genes components. The genes used as the seed members for
this model are all either found in the
gammproteobacterial context or the CydABCD context. All
members of this family scoring above trusted at the time
of its creation were from genomes which encode a
cytochrome bd complex. Unfortunately, the gene symbol
nomenclature adopted based on this operon in B. subtilis
assigns cydC to the third gene in the operon where this
gene is actually homologous to the E. coli cydD gene. We
have chosen to name all homologs in this family in
accordance with the precedence of publication of the E.
coli name, CydD.
Length = 529
Score = 116 bits (293), Expect = 9e-30
Identities = 52/184 (28%), Positives = 87/184 (47%), Gaps = 24/184 (13%)
Query: 89 VSLDNVTAQWSLQNADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKV 148
+ V+ + L VS T P + ++G GAGK++LL+++L + + G +
Sbjct: 322 LEFSGVS--VAYPGRRPALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSI 379
Query: 149 SLGG-------------TVSYASQEPWIFAATIRQNILFGLPY-----LRRRYADVIRVC 190
++ G +++ Q P++FA TI +NI P +R +
Sbjct: 380 AVNGVPLADADADSWRDQIAWVPQHPFLFAGTIAENIRLARPDASDAEIRE----ALERA 435
Query: 191 ALQDDFDSLPNGDFTVVGERGASLSGGQKARINLARAVYKNADIYLLDDPLSAVDMHVGK 250
L + +LP G T +GE GA LSGGQ R+ LARA ++A + LLD+P + +D
Sbjct: 436 GLDEFVAALPQGLDTPIGEGGAGLSGGQAQRLALARAFLRDAPLLLLDEPTAHLDAETEA 495
Query: 251 HLFE 254
+ E
Sbjct: 496 EVLE 499
>gnl|CDD|213195 cd03228, ABCC_MRP_Like, ATP-binding cassette domain of multidrug
resistance protein-like transporters. The MRP
(Multidrug Resistance Protein)-like transporters are
involved in drug, peptide, and lipid export. They belong
to the subfamily C of the ATP-binding cassette (ABC)
superfamily of transport proteins. The ABCC subfamily
contains transporters with a diverse functional spectrum
that includes ion transport, cell surface receptor, and
toxin secretion activities. The MRP-like family, similar
to all ABC proteins, have a common four-domain core
structure constituted by two membrane-spanning domains,
each composed of six transmembrane (TM) helices, and two
nucleotide-binding domains (NBD). ABC transporters are a
subset of nucleotide hydrolases that contain a signature
motif, Q-loop, and H-loop/switch region, in addition to,
the Walker A motif/P-loop and Walker B motif commonly
found in a number of ATP- and GTP-binding and
hydrolyzing proteins.
Length = 171
Score = 109 bits (275), Expect = 1e-29
Identities = 44/172 (25%), Positives = 74/172 (43%), Gaps = 55/172 (31%)
Query: 89 VSLDNVTAQWSLQNADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKV 148
+ NV+ + L VS+T KP + I+G G+GK++LL ++L +SG++
Sbjct: 1 IEFKNVSFSYP-GRPKPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEI 59
Query: 149 SLGGT-------------VSYASQEPWIFAATIRQNILFGLPYLRRRYADVIRVCALQDD 195
+ G ++Y Q+P++F+ TIR+NI
Sbjct: 60 LIDGVDLRDLDLESLRKNIAYVPQDPFLFSGTIRENI----------------------- 96
Query: 196 FDSLPNGDFTVVGERGASLSGGQKARINLARAVYKNADIYLLDDPLSAVDMH 247
LSGGQ+ RI +ARA+ ++ I +LD+ SA+D
Sbjct: 97 ------------------LSGGQRQRIAIARALLRDPPILILDEATSALDPE 130
>gnl|CDD|227321 COG4988, CydD, ABC-type transport system involved in cytochrome bd
biosynthesis, ATPase and permease components [Energy
production and conversion / Posttranslational
modification, protein turnover, chaperones].
Length = 559
Score = 116 bits (292), Expect = 1e-29
Identities = 59/173 (34%), Positives = 96/173 (55%), Gaps = 17/173 (9%)
Query: 89 VSLDNVTAQWSLQNADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKV 148
+SL+N++ ++ + L+ +++T K QL ++GA GAGK++LL+++L L + G++
Sbjct: 321 ISLENLSFRYP--DGKPALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAPTQGEI 378
Query: 149 SLGGT-------------VSYASQEPWIFAATIRQNILFGLPYL-RRRYADVIRVCALQD 194
+ G +S+ SQ P++FA TIR+NIL P + L
Sbjct: 379 RVNGIDLRDLSPEAWRKQISWVSQNPYLFAGTIRENILLARPDASDEEIIAALDQAGL-L 437
Query: 195 DFDSLPNGDFTVVGERGASLSGGQKARINLARAVYKNADIYLLDDPLSAVDMH 247
+F P+G TV+GE GA LSGGQ R+ LARA+ A + LLD+P + +D
Sbjct: 438 EFVPKPDGLDTVIGEGGAGLSGGQAQRLALARALLSPASLLLLDEPTAHLDAE 490
>gnl|CDD|213221 cd03254, ABCC_Glucan_exporter_like, ATP-binding cassette domain of
glucan transporter and related proteins, subfamily C.
Glucan exporter ATP-binding protein. In A. tumefaciens
cyclic beta-1, 2-glucan must be transported into the
periplasmic space to exert its action as a virulence
factor. This subfamily belongs to the MRP-like family
and is involved in drug, peptide, and lipid export. The
MRP-like family, similar to all ABC proteins, have a
common four-domain core structure constituted by two
membrane-spanning domains each composed of six
transmembrane (TM) helices and two nucleotide-binding
domains (NBD). ABC transporters are a subset of
nucleotide hydrolases that contain a signature motif,
Q-loop, and H-loop/switch region, in addition to, the
Walker A motif/P-loop and Walker B motif commonly found
in a number of ATP- and GTP-binding and hydrolyzing
proteins.
Length = 229
Score = 110 bits (277), Expect = 2e-29
Identities = 49/175 (28%), Positives = 85/175 (48%), Gaps = 20/175 (11%)
Query: 87 GHVSLDNVTAQWSLQNADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSG 146
G + +NV +S L ++ + KP + I+G GAGKT+L+++++ G
Sbjct: 1 GEIEFENV--NFSYDEKKPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKG 58
Query: 147 KVSLGGT-------------VSYASQEPWIFAATIRQNILFGLPYLRRRYADVIRVCALQ 193
++ + G + Q+ ++F+ TI +NI G P +VI
Sbjct: 59 QILIDGIDIRDISRKSLRSMIGVVLQDTFLFSGTIMENIRLGRPNATD--EEVIEAAKEA 116
Query: 194 --DDF-DSLPNGDFTVVGERGASLSGGQKARINLARAVYKNADIYLLDDPLSAVD 245
DF LPNG TV+GE G +LS G++ + +ARA+ ++ I +LD+ S +D
Sbjct: 117 GAHDFIMKLPNGYDTVLGENGGNLSQGERQLLAIARAMLRDPKILILDEATSNID 171
>gnl|CDD|213218 cd03251, ABCC_MsbA, ATP-binding cassette domain of the bacterial
lipid flippase and related proteins, subfamily C. MsbA
is an essential ABC transporter, closely related to
eukaryotic MDR proteins. ABC transporters are a large
family of proteins involved in the transport of a wide
variety of different compounds, like sugars, ions,
peptides, and more complex organic molecules. The
nucleotide binding domain shows the highest similarity
between all members of the family. ABC transporters are
a subset of nucleotide hydrolases that contain a
signature motif, Q-loop, and H-loop/switch region, in
addition to, the Walker A motif/P-loop and Walker B
motif commonly found in a number of ATP- and GTP-binding
and hydrolyzing proteins.
Length = 234
Score = 105 bits (264), Expect = 2e-27
Identities = 53/173 (30%), Positives = 88/173 (50%), Gaps = 19/173 (10%)
Query: 89 VSLDNVTAQWSLQNADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKV 148
V NVT ++ + L +S+ + ++G G+GK++L+++I + SG++
Sbjct: 1 VEFKNVTFRYP-GDGPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRI 59
Query: 149 SLGGT-------------VSYASQEPWIFAATIRQNILFGLPYLRRRYADVIRVC--ALQ 193
+ G + SQ+ ++F T+ +NI +G P R +V A
Sbjct: 60 LIDGHDVRDYTLASLRRQIGLVSQDVFLFNDTVAENIAYGRPGATR--EEVEEAARAANA 117
Query: 194 DDF-DSLPNGDFTVVGERGASLSGGQKARINLARAVYKNADIYLLDDPLSAVD 245
+F LP G TV+GERG LSGGQ+ RI +ARA+ K+ I +LD+ SA+D
Sbjct: 118 HEFIMELPEGYDTVIGERGVKLSGGQRQRIAIARALLKDPPILILDEATSALD 170
>gnl|CDD|213215 cd03248, ABCC_TAP, ATP-binding cassette domain of the Transporter
Associated with Antigen Processing, subfamily C. TAP
(Transporter Associated with Antigen Processing) is
essential for peptide delivery from the cytosol into the
lumen of the endoplasmic reticulum (ER), where these
peptides are loaded on major histocompatibility complex
(MHC) I molecules. Loaded MHC I leave the ER and display
their antigenic cargo on the cell surface to cytotoxic T
cells. Subsequently, virus-infected or malignantly
transformed cells can be eliminated. TAP belongs to the
large family of ATP-binding cassette (ABC) transporters,
which translocate a vast variety of solutes across
membranes.
Length = 226
Score = 102 bits (256), Expect = 2e-26
Identities = 58/192 (30%), Positives = 92/192 (47%), Gaps = 15/192 (7%)
Query: 86 KGHVSLDNVTAQWSLQNADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISS 145
KG V NVT + + L L VS T P ++ ++G G+GK++++ ++ N +
Sbjct: 9 KGIVKFQNVTFAYPTRPDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQG 68
Query: 146 GKVSLGG-------------TVSYASQEPWIFAATIRQNILFGLPYLRRRYADVIRVCAL 192
G+V L G VS QEP +FA +++ NI +GL A
Sbjct: 69 GQVLLDGKPISQYEHKYLHSKVSLVGQEPVLFARSLQDNIAYGLQSCSFECVKEAAQKAH 128
Query: 193 QDDFDS-LPNGDFTVVGERGASLSGGQKARINLARAVYKNADIYLLDDPLSAVDMHVGKH 251
F S L +G T VGE+G+ LSGGQK R+ +ARA+ +N + +LD+ SA+D +
Sbjct: 129 AHSFISELASGYDTEVGEKGSQLSGGQKQRVAIARALIRNPQVLILDEATSALDAE-SEQ 187
Query: 252 LFEDCISGCLTS 263
+ +
Sbjct: 188 QVQQALYDWPER 199
>gnl|CDD|182732 PRK10789, PRK10789, putative multidrug transporter
membrane\ATP-binding components; Provisional.
Length = 569
Score = 106 bits (267), Expect = 3e-26
Identities = 62/159 (38%), Positives = 86/159 (54%), Gaps = 14/159 (8%)
Query: 101 QNADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKV------------ 148
Q L V+ T KP Q+ I G G+GK++LL +I +S G +
Sbjct: 325 QTDHPALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFDVSEGDIRFHDIPLTKLQL 384
Query: 149 -SLGGTVSYASQEPWIFAATIRQNILFGLP-YLRRRYADVIRVCALQDDFDSLPNGDFTV 206
S ++ SQ P++F+ T+ NI G P ++ V R+ ++ DD LP G T
Sbjct: 385 DSWRSRLAVVSQTPFLFSDTVANNIALGRPDATQQEIEHVARLASVHDDILRLPQGYDTE 444
Query: 207 VGERGASLSGGQKARINLARAVYKNADIYLLDDPLSAVD 245
VGERG LSGGQK RI++ARA+ NA+I +LDD LSAVD
Sbjct: 445 VGERGVMLSGGQKQRISIARALLLNAEILILDDALSAVD 483
>gnl|CDD|131259 TIGR02204, MsbA_rel, ABC transporter, permease/ATP-binding protein.
This protein is related to a Proteobacterial ATP
transporter that exports lipid A and to eukaryotic
P-glycoproteins.
Length = 576
Score = 105 bits (263), Expect = 1e-25
Identities = 56/177 (31%), Positives = 93/177 (52%), Gaps = 18/177 (10%)
Query: 85 GKGHVSLDNVTAQWSLQNADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRIS 144
+G + + V + + L+ +++T +P + ++G GAGK++L ++L
Sbjct: 334 LRGEIEFEQVNFAYPARPDQPALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYDPQ 393
Query: 145 SGKVSLGGT-------------VSYASQEPWIFAATIRQNILFGLPYLRRRYADVIRVC- 190
SG++ L G ++ Q+P +FAA++ +NI +G P +V
Sbjct: 394 SGRILLDGVDLRQLDPAELRARMALVPQDPVLFAASVMENIRYGRPDATD--EEVEAAAR 451
Query: 191 -ALQDDFDS-LPNGDFTVVGERGASLSGGQKARINLARAVYKNADIYLLDDPLSAVD 245
A +F S LP G T +GERG +LSGGQ+ RI +ARA+ K+A I LLD+ SA+D
Sbjct: 452 AAHAHEFISALPEGYDTYLGERGVTLSGGQRQRIAIARAILKDAPILLLDEATSALD 508
>gnl|CDD|234041 TIGR02868, CydC, thiol reductant ABC exporter, CydC subunit. The
gene pair cydCD encodes an ABC-family transporter in
which each gene contains an N-terminal membrane-spanning
domain (pfam00664) and a C-terminal ATP-binding domain
(pfam00005). In E. coli these genes were discovered as
mutants which caused the terminal heme-copper oxidase
complex cytochrome bd to fail to assemble. Recent work
has shown that the transporter is involved in export of
redox-active thiol compounds such as cysteine and
glutathione. The linkage to assembly of the cytochrome
bd complex is further supported by the conserved operon
structure found outside the gammaproteobacteria
(cydABCD) containing both the transporter and oxidase
genes components. The genes used as the seed members for
this model are all either found in the
gammproteobacterial context or the CydABCD context. All
members of this family scoring above trusted at the time
of its creation were from genomes which encode a
cytochrome bd complex.
Length = 530
Score = 103 bits (260), Expect = 3e-25
Identities = 54/163 (33%), Positives = 81/163 (49%), Gaps = 14/163 (8%)
Query: 107 LNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSLGG-------------T 153
L+ VS+ P + I+G G+GK++LL + L G+V+L G
Sbjct: 351 LDGVSLDLPPGERVAILGPSGSGKSTLLATLAGLLDPLQGEVTLDGVPVSSLDQDEVRRR 410
Query: 154 VSYASQEPWIFAATIRQNILFGLPYLR-RRYADVIRVCALQDDFDSLPNGDFTVVGERGA 212
VS +Q+ +F T+R+N+ P + L D +LP+G TV+GE GA
Sbjct: 411 VSVCAQDAHLFDTTVRENLRLARPDATDEELWAALERVGLADWLRALPDGLDTVLGEGGA 470
Query: 213 SLSGGQKARINLARAVYKNADIYLLDDPLSAVDMHVGKHLFED 255
LSGG++ R+ LARA+ +A I LLD+P +D L ED
Sbjct: 471 RLSGGERQRLALARALLADAPILLLDEPTEHLDAETADELLED 513
>gnl|CDD|130261 TIGR01193, bacteriocin_ABC, ABC-type bacteriocin transporter. This
model describes ABC-type bacteriocin transporter. The
amino terminal domain (pfam03412) processes the
N-terminal leader peptide from the bacteriocin while
C-terminal domains resemble ABC transporter membrane
protein and ATP-binding cassette domain. In general,
bacteriocins are agents which are responsible for
killing or inhibiting the closely related species or
even different strains of the same species. Bacteriocins
are usually encoded by bacterial plasmids. Bacteriocins
are named after the species and hence in literature one
encounters various names e.g., leucocin from Leuconostic
geldium; pedicocin from Pedicoccus acidilactici; sakacin
from Lactobacillus sake etc [Protein fate, Protein and
peptide secretion and trafficking, Protein fate, Protein
modification and repair, Transport and binding proteins,
Other].
Length = 708
Score = 97.9 bits (244), Expect = 4e-23
Identities = 66/242 (27%), Positives = 120/242 (49%), Gaps = 35/242 (14%)
Query: 31 GLYMTFNLFTTRMALFCT-LTSFIFFGGRLSTDRVLN------FLLLGEHEPRKINSVHS 83
G +TFN ++ F T L + I +L RV N +L+ E +K + +
Sbjct: 412 GQLITFNAL---LSYFLTPLENIINLQPKLQAARVANNRLNEVYLVDSEFINKKKRTELN 468
Query: 84 NGKGHVSLDNVTAQWSLQNADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRI 143
N G + +++V+ + L+ +S+T K I+G G+GK++L +++ +
Sbjct: 469 NLNGDIVINDVSYSYGY--GSNILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQA 526
Query: 144 SSGKVSLGGT-------------VSYASQEPWIFAATIRQNILFGLPYLRRRYA---DVI 187
SG++ L G ++Y QEP+IF+ +I +N+L G + ++
Sbjct: 527 RSGEILLNGFSLKDIDRHTLRQFINYLPQEPYIFSGSILENLLLG----AKENVSQDEIW 582
Query: 188 RVCAL---QDDFDSLPNGDFTVVGERGASLSGGQKARINLARAVYKNADIYLLDDPLSAV 244
C + +DD +++P G T + E G+S+SGGQK RI LARA+ ++ + +LD+ S +
Sbjct: 583 AACEIAEIKDDIENMPLGYQTELSEEGSSISGGQKQRIALARALLTDSKVLILDESTSNL 642
Query: 245 DM 246
D
Sbjct: 643 DT 644
>gnl|CDD|200134 TIGR01842, type_I_sec_PrtD, type I secretion system ABC
transporter, PrtD family. Type I protein secretion is a
system in some Gram-negative bacteria to export proteins
(often proteases) across both inner and outer membranes
to the extracellular medium. This is one of three
proteins of the type I secretion apparatus. Targeted
proteins are not cleaved at the N-terminus, but rather
carry signals located toward the extreme C-terminus to
direct type I secretion [Protein fate, Protein and
peptide secretion and trafficking].
Length = 544
Score = 96.3 bits (240), Expect = 1e-22
Identities = 55/176 (31%), Positives = 90/176 (51%), Gaps = 15/176 (8%)
Query: 84 NGKGHVSLDNVTAQWSLQNADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRI 143
+GH+S++NVT TL +S + + + IIG G+GK++L +I+
Sbjct: 312 EPEGHLSVENVTIVPPGGKKP-TLRGISFSLQAGEALAIIGPSGSGKSTLARLIVGIWPP 370
Query: 144 SSGKVSL-------------GGTVSYASQEPWIFAATIRQNIL-FGLPYLRRRYADVIRV 189
+SG V L G + Y Q+ +F T+ +NI FG + + ++
Sbjct: 371 TSGSVRLDGADLKQWDRETFGKHIGYLPQDVELFPGTVAENIARFGENADPEKIIEAAKL 430
Query: 190 CALQDDFDSLPNGDFTVVGERGASLSGGQKARINLARAVYKNADIYLLDDPLSAVD 245
+ + LP+G TV+G GA+LSGGQ+ RI LARA+Y + + +LD+P S +D
Sbjct: 431 AGVHELILRLPDGYDTVIGPGGATLSGGQRQRIALARALYGDPKLVVLDEPNSNLD 486
>gnl|CDD|213211 cd03244, ABCC_MRP_domain2, ATP-binding cassette domain 2 of
multidrug resistance-associated protein. The ABC
subfamily C is also known as MRP (multidrug
resistance-associated protein). Some of the MRP members
have five additional transmembrane segments in their
N-terminus, but the function of these additional
membrane-spanning domains is not clear. The MRP was
found in the multidrug-resistance lung cancer cell in
which p-glycoprotein was not overexpressed. MRP exports
glutathione by drug stimulation, as well as, certain
substrates in conjugated forms with anions, such as
glutathione, glucuronate, and sulfate.
Length = 221
Score = 91.4 bits (228), Expect = 3e-22
Identities = 55/180 (30%), Positives = 90/180 (50%), Gaps = 26/180 (14%)
Query: 87 GHVSLDNVTAQWSLQNADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSG 146
G + NV+ ++ N L +S + KP + I+G G+GK+SLL + + +SSG
Sbjct: 1 GDIEFKNVSLRYR-PNLPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSG 59
Query: 147 KVSLGG-------------TVSYASQEPWIFAATIRQNI-LFGLPYLRRRYAD-----VI 187
+ + G +S Q+P +F+ TIR N+ FG Y+D +
Sbjct: 60 SILIDGVDISKIGLHDLRSRISIIPQDPVLFSGTIRSNLDPFG------EYSDEELWQAL 113
Query: 188 RVCALQDDFDSLPNGDFTVVGERGASLSGGQKARINLARAVYKNADIYLLDDPLSAVDMH 247
L++ +SLP G TVV E G +LS GQ+ + LARA+ + + I +LD+ ++VD
Sbjct: 114 ERVGLKEFVESLPGGLDTVVEEGGENLSVGQRQLLCLARALLRKSKILVLDEATASVDPE 173
>gnl|CDD|213220 cd03253, ABCC_ATM1_transporter, ATP-binding cassette domain of
iron-sulfur clusters transporter, subfamily C. ATM1 is
an ABC transporter that is expressed in the
mitochondria. Although the specific function of ATM1 is
unknown, its disruption results in the accumulation of
excess mitochondrial iron, loss of mitochondrial
cytochromes, oxidative damage to mitochondrial DNA, and
decreased levels of cytosolic heme proteins. ABC
transporters are a large family of proteins involved in
the transport of a wide variety of different compounds,
like sugars, ions, peptides, and more complex organic
molecules. The nucleotide binding domain shows the
highest similarity between all members of the family.
ABC transporters are a subset of nucleotide hydrolases
that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing proteins.
Length = 236
Score = 91.1 bits (227), Expect = 4e-22
Identities = 56/182 (30%), Positives = 86/182 (47%), Gaps = 20/182 (10%)
Query: 89 VSLDNVTAQWSLQNADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKV 148
+ +NVT ++ L VS T + I+G G+GK+++L ++ +SSG +
Sbjct: 1 IEFENVT--FAYDPGRPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSI 58
Query: 149 -------------SLGGTVSYASQEPWIFAATIRQNILFGLPYLRRRYADVIRVC---AL 192
SL + Q+ +F TI NI +G P +VI +
Sbjct: 59 LIDGQDIREVTLDSLRRAIGVVPQDTVLFNDTIGYNIRYGRPDATD--EEVIEAAKAAQI 116
Query: 193 QDDFDSLPNGDFTVVGERGASLSGGQKARINLARAVYKNADIYLLDDPLSAVDMHVGKHL 252
D P+G T+VGERG LSGG+K R+ +ARA+ KN I LLD+ SA+D H + +
Sbjct: 117 HDKIMRFPDGYDTIVGERGLKLSGGEKQRVAIARAILKNPPILLLDEATSALDTHTEREI 176
Query: 253 FE 254
Sbjct: 177 QA 178
>gnl|CDD|131258 TIGR02203, MsbA_lipidA, lipid A export permease/ATP-binding protein
MsbA. This family consists of a single polypeptide
chain transporter in the ATP-binding cassette (ABC)
transporter family, MsbA, which exports lipid A. It may
also act in multidrug resistance. Lipid A, a part of
lipopolysaccharide, is found in the outer leaflet of the
outer membrane of most Gram-negative bacteria. Members
of this family are restricted to the Proteobacteria
(although lipid A is more broadly distributed) and often
are clustered with lipid A biosynthesis genes [Cell
envelope, Biosynthesis and degradation of surface
polysaccharides and lipopolysaccharides, Transport and
binding proteins, Other].
Length = 571
Score = 94.4 bits (235), Expect = 6e-22
Identities = 55/175 (31%), Positives = 90/175 (51%), Gaps = 16/175 (9%)
Query: 86 KGHVSLDNVTAQWSLQNADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISS 145
+G V NVT ++ ++ L+++S+ +P + ++G G+GK++L+++I S
Sbjct: 328 RGDVEFRNVTFRYPGRDRP-ALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPDS 386
Query: 146 GKVSLGGT-------------VSYASQEPWIFAATIRQNILFGLP--YLRRRYADVIRVC 190
G++ L G V+ SQ+ +F TI NI +G R +
Sbjct: 387 GQILLDGHDLADYTLASLRRQVALVSQDVVLFNDTIANNIAYGRTEQADRAEIERALAAA 446
Query: 191 ALQDDFDSLPNGDFTVVGERGASLSGGQKARINLARAVYKNADIYLLDDPLSAVD 245
QD D LP G T +GE G LSGGQ+ R+ +ARA+ K+A I +LD+ SA+D
Sbjct: 447 YAQDFVDKLPLGLDTPIGENGVLLSGGQRQRLAIARALLKDAPILILDEATSALD 501
>gnl|CDD|213260 cd03293, ABC_NrtD_SsuB_transporters, ATP-binding cassette domain of
the nitrate and sulfonate transporters. NrtD and SsuB
are the ATP-binding subunits of the bacterial ABC-type
nitrate and sulfonate transport systems, respectively.
ABC transporters are a large family of proteins involved
in the transport of a wide variety of different
compounds, like sugars, ions, peptides, and more complex
organic molecules. The nucleotide binding domain shows
the highest similarity between all members of the
family. ABC transporters are a subset of nucleotide
hydrolases that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing proteins.
Length = 220
Score = 87.5 bits (218), Expect = 6e-21
Identities = 47/179 (26%), Positives = 80/179 (44%), Gaps = 34/179 (18%)
Query: 89 VSLDNVTAQWSLQNADLT-LNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGK 147
+ + NV+ + +T L +S++ + + ++G G GK++LL II R +SG+
Sbjct: 1 LEVRNVSKTYGGGGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGE 60
Query: 148 VSLGGT--------VSYASQE----PWIFAATIRQNILFGL-------PYLRRRYADVIR 188
V + G Y Q+ PW T+ N+ GL R R +++
Sbjct: 61 VLVDGEPVTGPGPDRGYVFQQDALLPW---LTVLDNVALGLELQGVPKAEARERAEELLE 117
Query: 189 VCALQDDFDSLPNGDFTVVGERGASLSGGQKARINLARAVYKNADIYLLDDPLSAVDMH 247
+ L ++ P LSGG + R+ LARA+ + D+ LLD+P SA+D
Sbjct: 118 LVGLSGFENAYP-----------HQLSGGMRQRVALARALAVDPDVLLLDEPFSALDAL 165
>gnl|CDD|184214 PRK13657, PRK13657, cyclic beta-1,2-glucan ABC transporter;
Provisional.
Length = 588
Score = 90.0 bits (224), Expect = 2e-20
Identities = 63/181 (34%), Positives = 94/181 (51%), Gaps = 24/181 (13%)
Query: 83 SNGKGHVSLDNVTAQWSLQNADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELR 142
KG V D+V+ +S N+ + VS KP Q I+G GAGK++L++++
Sbjct: 329 GRVKGAVEFDDVS--FSYDNSRQGVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFD 386
Query: 143 ISSGKVSLGG----TVSYAS---------QEPWIFAATIRQNILFGLPYLR----RRYAD 185
SG++ + G TV+ AS Q+ +F +I NI G P R A+
Sbjct: 387 PQSGRILIDGTDIRTVTRASLRRNIAVVFQDAGLFNRSIEDNIRVGRPDATDEEMRAAAE 446
Query: 186 VIRVCALQDDF-DSLPNGDFTVVGERGASLSGGQKARINLARAVYKNADIYLLDDPLSAV 244
R A DF + P+G TVVGERG LSGG++ R+ +ARA+ K+ I +LD+ SA+
Sbjct: 447 --RAQAH--DFIERKPDGYDTVVGERGRQLSGGERQRLAIARALLKDPPILILDEATSAL 502
Query: 245 D 245
D
Sbjct: 503 D 503
>gnl|CDD|227320 COG4987, CydC, ABC-type transport system involved in cytochrome bd
biosynthesis, fused ATPase and permease components
[Energy production and conversion / Posttranslational
modification, protein turnover, chaperones].
Length = 573
Score = 90.1 bits (224), Expect = 2e-20
Identities = 43/159 (27%), Positives = 75/159 (47%), Gaps = 14/159 (8%)
Query: 101 QNADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSLGG-------- 152
L ++T + I+G G+GK++LL ++ G ++L G
Sbjct: 348 GQQTKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWDPQQGSITLNGVEIASLDE 407
Query: 153 -----TVSYASQEPWIFAATIRQNILFGLPYLR-RRYADVIRVCALQDDFDSLPNGDFTV 206
T+S +Q +F+ T+R N+ P ++ L+ +S P+G T
Sbjct: 408 QALRETISVLTQRVHLFSGTLRDNLRLANPDASDEELWAALQQVGLEKLLESAPDGLNTW 467
Query: 207 VGERGASLSGGQKARINLARAVYKNADIYLLDDPLSAVD 245
+GE G LSGG++ R+ LARA+ +A ++LLD+P +D
Sbjct: 468 LGEGGRRLSGGERRRLALARALLHDAPLWLLDEPTEGLD 506
>gnl|CDD|233209 TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) Family protein.
[Transport and binding proteins, Other].
Length = 711
Score = 89.4 bits (222), Expect = 3e-20
Identities = 60/209 (28%), Positives = 98/209 (46%), Gaps = 21/209 (10%)
Query: 61 TDRVLNFLLLGEHEPRKINSVHSNGKGHVSLDNVTAQWSLQNADLTLNAVSITFKPKQLA 120
DR N L G P N +G + +V+ + + L ++ T P ++
Sbjct: 458 LDRKPNIPLTGTLAP-------LNLEGLIEFQDVSFSYPNRPDVPVLKGLTFTLHPGEVV 510
Query: 121 CIIGAIGAGKTSLLHIILNELRISSGKVSLGGT-------------VSYASQEPWIFAAT 167
++G G+GK+++ ++ N + + G+V L G V+ QEP +F+ +
Sbjct: 511 ALVGPSGSGKSTVAALLQNLYQPTGGQVLLDGVPLVQYDHHYLHRQVALVGQEPVLFSGS 570
Query: 168 IRQNILFGLPYLRRRYADVIRVCALQDDFDS-LPNGDFTVVGERGASLSGGQKARINLAR 226
+R+NI +GL A DF PNG T VGE+G+ LSGGQK RI +AR
Sbjct: 571 VRENIAYGLTDTPDEEIMAAAKAANAHDFIMEFPNGYDTEVGEKGSQLSGGQKQRIAIAR 630
Query: 227 AVYKNADIYLLDDPLSAVDMHVGKHLFED 255
A+ + + +LD+ SA+D + L E
Sbjct: 631 ALVRKPRVLILDEATSALDAECEQLLQES 659
>gnl|CDD|213219 cd03252, ABCC_Hemolysin, ATP-binding cassette domain of hemolysin
B, subfamily C. The ABC-transporter hemolysin B is a
central component of the secretion machinery that
translocates the toxin, hemolysin A, in a
Sec-independent fashion across both membranes of E.
coli. The hemolysin A (HlyA) transport machinery is
composed of the ATP-binding cassette (ABC) transporter
HlyB located in the inner membrane, hemolysin D (HlyD),
also anchored in the inner membrane, and TolC, which
resides in the outer membrane. HlyD apparently forms a
continuous channel that bridges the entire periplasm,
interacting with TolC and HlyB. This arrangement
prevents the appearance of periplasmic intermediates of
HlyA during substrate transport. Little is known about
the molecular details of HlyA transport, but it is
evident that ATP-hydrolysis by the ABC-transporter HlyB
is a necessary source of energy.
Length = 237
Score = 85.6 bits (212), Expect = 5e-20
Identities = 51/171 (29%), Positives = 85/171 (49%), Gaps = 15/171 (8%)
Query: 89 VSLDNVTAQWSLQNADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKV 148
++ ++V ++ + L+ +S+ KP ++ I+G G+GK++L +I +G+V
Sbjct: 1 ITFEHVRFRYKPDGPVI-LDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRV 59
Query: 149 SLGG-------------TVSYASQEPWIFAATIRQNILFGLPYL-RRRYADVIRVCALQD 194
+ G V QE +F +IR NI P + R + ++ D
Sbjct: 60 LVDGHDLALADPAWLRRQVGVVLQENVLFNRSIRDNIALADPGMSMERVIEAAKLAGAHD 119
Query: 195 DFDSLPNGDFTVVGERGASLSGGQKARINLARAVYKNADIYLLDDPLSAVD 245
LP G T+VGE+GA LSGGQ+ RI +ARA+ N I + D+ SA+D
Sbjct: 120 FISELPEGYDTIVGEQGAGLSGGQRQRIAIARALIHNPRILIFDEATSALD 170
>gnl|CDD|236870 PRK11174, PRK11174, cysteine/glutathione ABC transporter
membrane/ATP-binding component; Reviewed.
Length = 588
Score = 88.7 bits (221), Expect = 5e-20
Identities = 48/161 (29%), Positives = 72/161 (44%), Gaps = 33/161 (20%)
Query: 110 VSITFKPKQLACIIGAIGAGKTSLLHIILN-------------ELRISSGKVSLGGTVSY 156
++ T Q ++G GAGKTSLL+ +L ELR S +S+
Sbjct: 369 LNFTLPAGQRIALVGPSGAGKTSLLNALLGFLPYQGSLKINGIELR-ELDPESWRKHLSW 427
Query: 157 ASQEPWIFAATIRQNILFGLPY---------LRRRYADVIRVCALQDDF-DSLPNGDFTV 206
Q P + T+R N+L G P L + +F LP G T
Sbjct: 428 VGQNPQLPHGTLRDNVLLGNPDASDEQLQQALENAWVS---------EFLPLLPQGLDTP 478
Query: 207 VGERGASLSGGQKARINLARAVYKNADIYLLDDPLSAVDMH 247
+G++ A LS GQ R+ LARA+ + + LLD+P +++D H
Sbjct: 479 IGDQAAGLSVGQAQRLALARALLQPCQLLLLDEPTASLDAH 519
>gnl|CDD|226969 COG4618, ArpD, ABC-type protease/lipase transport system, ATPase
and permease components [General function prediction
only].
Length = 580
Score = 87.7 bits (218), Expect = 1e-19
Identities = 62/215 (28%), Positives = 94/215 (43%), Gaps = 35/215 (16%)
Query: 54 FFGGRLSTDRVLNFL-LLGEHEPRKINSVHSNGKGHVSLDNVTAQWSLQNADLTLNAVSI 112
F R S R+ L L R +G +S++ +TA Q L +S
Sbjct: 302 FVAARQSYKRLNELLAELPAAAERMP---LPAPQGALSVERLTAAPPGQKKP-ILKGISF 357
Query: 113 TFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKV-------------SLGGTVSYASQ 159
+ + IIG G+GK++L +++ +SG V LG + Y Q
Sbjct: 358 ALQAGEALGIIGPSGSGKSTLARLLVGIWPPTSGSVRLDGADLRQWDREQLGRHIGYLPQ 417
Query: 160 EPWIFAATIRQNILFGLPYLRRRYAD------VIRVCALQDDFD---SLPNGDFTVVGER 210
+ +F TI +NI R+ + VI L + LP G T +GE
Sbjct: 418 DVELFDGTIAENI--------ARFGEEADPEKVIEAARLAGVHELILRLPQGYDTRIGEG 469
Query: 211 GASLSGGQKARINLARAVYKNADIYLLDDPLSAVD 245
GA+LSGGQ+ RI LARA+Y + + +LD+P S +D
Sbjct: 470 GATLSGGQRQRIALARALYGDPFLVVLDEPNSNLD 504
>gnl|CDD|163508 TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin system ABC
transporter, peptidase/ATP-binding protein. This
protein describes a multidomain ABC transporter subunit
that is one of three protein families associated with
some regularity with a distinctive family of putative
bacteriocins. It includes a bacteriocin-processing
peptidase domain at the N-terminus. Model TIGR03793
describes a conserved propeptide region for this
bacteriocin family, unusual because it shows obvious
homology a region of the enzyme nitrile hydratase up to
the classic Gly-Gly cleavage motif. This family is
therefore predicted to be a subunit of a bacteriocin
processing and export system characteristic to this
system that we designate NHLM, Nitrile Hydratase Leader
Microcin [Transport and binding proteins, Amino acids,
peptides and amines, Cellular processes, Biosynthesis of
natural products].
Length = 710
Score = 86.2 bits (214), Expect = 4e-19
Identities = 69/236 (29%), Positives = 112/236 (47%), Gaps = 32/236 (13%)
Query: 39 FTTRMALFCT-LTSFIFFGGRLST--------DRVLNF---LLLGEHEPRKINSVHS-NG 85
F + M+ F + + + FGG L D VL LL E E S S
Sbjct: 415 FQSLMSSFLEPVNNLVGFGGTLQELEGDLNRLDDVLRNPVDPLLEEEEAPAAGSEPSPRL 474
Query: 86 KGHVSLDNVTAQWSLQNADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISS 145
G+V L N+T +S L + S+T +P Q ++G G+GK+++ ++ + S
Sbjct: 475 SGYVELRNITFGYSPLEPPL-IENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQPWS 533
Query: 146 GKVSLGG-------------TVSYASQEPWIFAATIRQNILFGLPYLRRRYADVIRVC-- 190
G++ G +V+ Q+ ++F T+R N+ P + AD++R C
Sbjct: 534 GEILFDGIPREEIPREVLANSVAMVDQDIFLFEGTVRDNLTLWDPTIPD--ADLVRACKD 591
Query: 191 -ALQDDFDSLPNGDFTVVGERGASLSGGQKARINLARAVYKNADIYLLDDPLSAVD 245
A+ D S P G + E GA+LSGGQ+ R+ +ARA+ +N I +LD+ SA+D
Sbjct: 592 AAIHDVITSRPGGYDAELAEGGANLSGGQRQRLEIARALVRNPSILILDEATSALD 647
>gnl|CDD|213226 cd03259, ABC_Carb_Solutes_like, ATP-binding cassette domain of the
carbohydrate and solute transporters-like. This family
is comprised of proteins involved in the transport of
apparently unrelated solutes and proteins specific for
di- and oligosaccharides and polyols. ABC transporters
are a large family of proteins involved in the transport
of a wide variety of different compounds, like sugars,
ions, peptides and more complex organic molecules. The
nucleotide-binding domain shows the highest similarity
between all members of the family. ABC transporters are
a subset of nucleotide hydrolases that contain a
signature motif, Q-loop, and H-loop/switch region, in
addition to, the Walker A motif/P-loop and Walker B
motif commonly found in a number of ATP- and GTP-binding
and hydrolyzing proteins.
Length = 213
Score = 82.6 bits (205), Expect = 4e-19
Identities = 47/176 (26%), Positives = 83/176 (47%), Gaps = 33/176 (18%)
Query: 89 VSLDNVTAQWSLQNADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKV 148
+ L ++ + + L+ +S+T +P + ++G G GKT+LL +I R SG++
Sbjct: 1 LELKGLSKTY---GSVRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEI 57
Query: 149 SLGGT-----------VSYASQEPWIFA-ATIRQNILFGL-------PYLRRRYADVIRV 189
+ G + Q+ +F T+ +NI FGL +R R +++ +
Sbjct: 58 LIDGRDVTGVPPERRNIGMVFQDYALFPHLTVAENIAFGLKLRGVPKAEIRARVRELLEL 117
Query: 190 CALQDDFDSLPNGDFTVVGERGASLSGGQKARINLARAVYKNADIYLLDDPLSAVD 245
L+ + P LSGGQ+ R+ LARA+ + + LLD+PLSA+D
Sbjct: 118 VGLEGLLNRYP-----------HELSGGQQQRVALARALAREPSLLLLDEPLSALD 162
>gnl|CDD|226359 COG3839, MalK, ABC-type sugar transport systems, ATPase components
[Carbohydrate transport and metabolism].
Length = 338
Score = 83.8 bits (208), Expect = 8e-19
Identities = 45/178 (25%), Positives = 81/178 (45%), Gaps = 35/178 (19%)
Query: 88 HVSLDNVTAQWSLQNADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGK 147
+ L NV + + L V++ + + ++G G GK++LL +I +SG+
Sbjct: 3 ELELKNVRKSF---GSFEVLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGE 59
Query: 148 VSLGGT-----------VSYASQEPWIF-AATIRQNILFGLPYLR--------RRYADVI 187
+ + G ++ Q ++ T+ +NI FGL LR +R +V
Sbjct: 60 ILIDGRDVTDLPPEKRGIAMVFQNYALYPHMTVYENIAFGL-KLRGVPKAEIDKRVKEVA 118
Query: 188 RVCALQDDFDSLPNGDFTVVGERGASLSGGQKARINLARAVYKNADIYLLDDPLSAVD 245
++ L+ + P LSGGQ+ R+ LARA+ + ++LLD+PLS +D
Sbjct: 119 KLLGLEHLLNRKP-----------LQLSGGQRQRVALARALVRKPKVFLLDEPLSNLD 165
>gnl|CDD|224045 COG1120, FepC, ABC-type cobalamin/Fe3+-siderophores transport
systems, ATPase components [Inorganic ion transport and
metabolism / Coenzyme metabolism].
Length = 258
Score = 81.8 bits (203), Expect = 2e-18
Identities = 41/159 (25%), Positives = 76/159 (47%), Gaps = 22/159 (13%)
Query: 107 LNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSLGG-------------T 153
L+ +S + ++ I+G G+GK++LL + L+ SG+V L G
Sbjct: 18 LDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIASLSPKELAKK 77
Query: 154 VSYASQEPWI-FAATIRQNILFGLPYLRRRYADVIRVCALQDD---FDSLPNGDFTVVGE 209
++Y Q P F T+ + +L G R + + + +D+ ++L + +
Sbjct: 78 LAYVPQSPSAPFGLTVYELVLLG----RYPHLGLFGRPSKEDEEIVEEALELLGLEHLAD 133
Query: 210 RG-ASLSGGQKARINLARAVYKNADIYLLDDPLSAVDMH 247
R LSGG++ R+ +ARA+ + I LLD+P S +D+
Sbjct: 134 RPVDELSGGERQRVLIARALAQETPILLLDEPTSHLDIA 172
>gnl|CDD|213181 cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-binding component of
iron-siderophores, vitamin B12 and hemin transporters
and related proteins. ABC transporters, involved in the
uptake of siderophores, heme, and vitamin B12, are
widely conserved in bacteria and archaea. Only very few
species lack representatives of the siderophore family
transporters. The E. coli BtuCD protein is an ABC
transporter mediating vitamin B12 uptake. The two
ATP-binding cassettes (BtuD) are in close contact with
each other, as are the two membrane-spanning subunits
(BtuC); this arrangement is distinct from that observed
for the E. coli lipid flippase MsbA. The BtuC subunits
provide 20 transmembrane helices grouped around a
translocation pathway that is closed to the cytoplasm by
a gate region, whereas the dimer arrangement of the BtuD
subunits resembles the ATP-bound form of the Rad50 DNA
repair enzyme. A prominent cytoplasmic loop of BtuC
forms the contact region with the ATP-binding cassette
and represent a conserved motif among the ABC
transporters.
Length = 180
Score = 79.8 bits (198), Expect = 2e-18
Identities = 43/145 (29%), Positives = 69/145 (47%), Gaps = 32/145 (22%)
Query: 107 LNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSLGGTVSYASQEPWIFA- 165
L+ +S++ + ++ I+G GAGK++LL + L+ SSG++ L G AS P A
Sbjct: 15 LDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDGK-DLASLSPKELAR 73
Query: 166 --ATIRQNI-LFGLPYLRRRYADVIRVCALQDDFDSLPNGDFTVVGERGASLSGGQKARI 222
A + Q + L GL +L R + LSGG++ R+
Sbjct: 74 KIAYVPQALELLGLAHLADRPFN---------------------------ELSGGERQRV 106
Query: 223 NLARAVYKNADIYLLDDPLSAVDMH 247
LARA+ + I LLD+P S +D+
Sbjct: 107 LLARALAQEPPILLLDEPTSHLDIA 131
>gnl|CDD|213264 cd03297, ABC_ModC_molybdenum_transporter, ATP-binding cassette
domain of the molybdenum transport system. ModC is an
ABC-type transporter and the ATPase component of a
molybdate transport system that also includes the
periplasmic binding protein ModA and the membrane
protein ModB. ABC transporters are a large family of
proteins involved in the transport of a wide variety of
different compounds, like sugars, ions, peptides and
more complex organic molecules. The nucleotide binding
domain shows the highest similarity between all members
of the family. ABC transporters are a subset of
nucleotide hydrolases that contain a signature motif,
Q-loop, and H-loop/switch region, in addition to, the
Walker A motif/P-loop and Walker B motif commonly found
in a number of ATP- and GTP-binding and hydrolyzing
proteins.
Length = 214
Score = 79.6 bits (197), Expect = 6e-18
Identities = 49/164 (29%), Positives = 73/164 (44%), Gaps = 26/164 (15%)
Query: 103 ADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSLGGT--------- 153
D TL + +++ I GA GAGK++LL I + G + L GT
Sbjct: 11 PDFTLK-IDFDL-NEEVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLFDSRKKI 68
Query: 154 --------VSYASQEPWIFA-ATIRQNILFGLPYLRRRYADVIRVCALQDDFDSLPNGDF 204
+ Q+ +F +R+N+ FGL R R D I V L D
Sbjct: 69 NLPPQQRKIGLVFQQYALFPHLNVRENLAFGLKRKRNR-EDRISVDELLDLLGLDH---- 123
Query: 205 TVVGERGASLSGGQKARINLARAVYKNADIYLLDDPLSAVDMHV 248
++ A LSGG+K R+ LARA+ ++ LLD+P SA+D +
Sbjct: 124 -LLNRYPAQLSGGEKQRVALARALAAQPELLLLDEPFSALDRAL 166
>gnl|CDD|226361 COG3842, PotA, ABC-type spermidine/putrescine transport systems,
ATPase components [Amino acid transport and metabolism].
Length = 352
Score = 81.6 bits (202), Expect = 7e-18
Identities = 48/182 (26%), Positives = 82/182 (45%), Gaps = 22/182 (12%)
Query: 85 GKGHVSLDNVTAQWSLQNADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRIS 144
K + + NV+ + A ++ +S+ K + ++G G GKT+LL +I + S
Sbjct: 2 PKPALEIRNVSKSFGDFTA---VDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPS 58
Query: 145 SGKVSLGGT-----------VSYASQEPWIFA-ATIRQNILFGLPYLRRRYADVI--RVC 190
SG++ L G + Q +F T+ +N+ FGL ++ I RV
Sbjct: 59 SGEILLDGEDITDVPPEKRPIGMVFQSYALFPHMTVEENVAFGLKVRKKLKKAEIKARVE 118
Query: 191 ALQDDFDSLPNGDFTVVGERGASLSGGQKARINLARAVYKNADIYLLDDPLSAVDMHVGK 250
+ G + LSGGQ+ R+ LARA+ + LLD+PLSA+D + +
Sbjct: 119 EALELV-----GLEGFADRKPHQLSGGQQQRVALARALVPEPKVLLLDEPLSALDAKLRE 173
Query: 251 HL 252
+
Sbjct: 174 QM 175
>gnl|CDD|130260 TIGR01192, chvA, glucan exporter ATP-binding protein. This model
describes glucan exporter ATP binding protein in
bacteria. It belongs to the larger ABC transporter
superfamily with the characteristic ATP binding motif.
The In general, this protein is in some ways implicated
in osmoregulation and suggested to participate in the
export of glucan from the cytoplasm to periplasm. The
cyclic beta-1,2-glucan in the bactrerial periplasmic
space is suggested to confer the property of high
osmolority. It has also been demonstrated that mutants
in this loci have lost functions of virulence and
motility. It is unclear as to how virulence and
osmoadaptaion are related [Transport and binding
proteins, Carbohydrates, organic alcohols, and acids].
Length = 585
Score = 82.6 bits (204), Expect = 7e-18
Identities = 61/191 (31%), Positives = 93/191 (48%), Gaps = 25/191 (13%)
Query: 74 EPRKINSVHSNGKGHVSLDNVTAQWSLQNADLTLNAVSITFKPKQLACIIGAIGAGKTSL 133
EP + N KG V ++T + N+ + VS K Q I+G GAGKT+L
Sbjct: 321 EPADAPEL-PNVKGAVEFRHIT--FEFANSSQGVFDVSFEAKAGQTVAIVGPTGAGKTTL 377
Query: 134 LHIILNELRISSGKVSLGG----TVSYAS---------QEPWIFAATIRQNILFGLPYLR 180
++++ + G++ + G TV+ S Q+ +F +IR+NI G R
Sbjct: 378 INLLQRVYDPTVGQILIDGIDINTVTRESLRKSIATVFQDAGLFNRSIRENIRLG----R 433
Query: 181 RRYAD-----VIRVCALQDDFDSLPNGDFTVVGERGASLSGGQKARINLARAVYKNADIY 235
D + A D NG T+VGERG LSGG++ R+ +ARA+ KNA I
Sbjct: 434 EGATDEEVYEAAKAAAAHDFILKRSNGYDTLVGERGNRLSGGERQRLAIARAILKNAPIL 493
Query: 236 LLDDPLSAVDM 246
+LD+ SA+D+
Sbjct: 494 VLDEATSALDV 504
>gnl|CDD|224041 COG1116, TauB, ABC-type nitrate/sulfonate/bicarbonate transport
system, ATPase component [Inorganic ion transport and
metabolism].
Length = 248
Score = 79.1 bits (196), Expect = 2e-17
Identities = 42/165 (25%), Positives = 72/165 (43%), Gaps = 33/165 (20%)
Query: 110 VSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSLGGT--------VSYASQE- 160
++++ + + I+G G GK++LL +I + +SG+V L G + Y QE
Sbjct: 22 INLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEVLLDGRPVTGPGPDIGYVFQED 81
Query: 161 ---PWIFAATIRQNILFGLPYL-------RRRYADVIRVCALQDDFDSLPNGDFTVVGER 210
PW T+ N+ GL R R +++ + L D P
Sbjct: 82 ALLPW---LTVLDNVALGLELRGKSKAEARERAKELLELVGLAGFEDKYP---------- 128
Query: 211 GASLSGGQKARINLARAVYKNADIYLLDDPLSAVDMHVGKHLFED 255
LSGG + R+ +ARA+ + LLD+P A+D + L ++
Sbjct: 129 -HQLSGGMRQRVAIARALATRPKLLLLDEPFGALDALTREELQDE 172
>gnl|CDD|226360 COG3840, ThiQ, ABC-type thiamine transport system, ATPase component
[Coenzyme metabolism].
Length = 231
Score = 77.8 bits (192), Expect = 4e-17
Identities = 52/176 (29%), Positives = 80/176 (45%), Gaps = 35/176 (19%)
Query: 89 VSLDNVTAQWSLQNADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKV 148
++LD+V +S + + + +T ++ I+G GAGK++LL++I +SG++
Sbjct: 2 LALDDVR--FSYGHLPMRFD---LTVPAGEIVAILGPSGAGKSTLLNLIAGFETPASGEI 56
Query: 149 SLGGT-----------VSYASQEPWIFA-ATIRQNILFGL-PYL------RRRYADVIRV 189
+ G VS QE +FA T+ QNI GL P L R +
Sbjct: 57 LINGVDHTASPPAERPVSMLFQENNLFAHLTVAQNIGLGLSPGLKLNAEQREKVEAAAAQ 116
Query: 190 CALQDDFDSLPNGDFTVVGERGASLSGGQKARINLARAVYKNADIYLLDDPLSAVD 245
L LP LSGGQ+ R+ LAR + + I LLD+P SA+D
Sbjct: 117 VGLAGFLKRLPG-----------ELSGGQRQRVALARCLVREQPILLLDEPFSALD 161
>gnl|CDD|234357 TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin system ABC
transporter, ATP-binding protein. Members of this
protein family are ABC transporter ATP-binding subunits,
part of a three-gene putative bacteriocin transport
operon. The other subunits include another ATP-binding
subunit (TIGR03796), which has an N-terminal leader
sequence cleavage domain, and an HlyD homolog
(TIGR03794). In a number of genomes, members of protein
families related to nitrile hydratase alpha subunit or
to nif11 have undergone paralogous family expansions,
with members possessing a putative bacteriocin cleavage
region ending with a classic Gly-Gly motif. Those sets
of putative bacteriocins, members of this protein family
and its partners TIGR03794 and TIGR03796, and
cyclodehydratase/docking scaffold fusion proteins of
thiazole/oxazole biosynthesis frequently show correlated
species distribution and co-clustering within many of
those genomes [Transport and binding proteins, Amino
acids, peptides and amines, Cellular processes,
Biosynthesis of natural products].
Length = 686
Score = 80.0 bits (198), Expect = 5e-17
Identities = 51/175 (29%), Positives = 85/175 (48%), Gaps = 20/175 (11%)
Query: 87 GHVSLDNVTAQWSLQNADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSG 146
G + +D VT ++ + L L+ VS+ +P + I+G G+GK++LL ++L SG
Sbjct: 450 GAIEVDRVTFRYR-PDGPLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETPESG 508
Query: 147 KVSLGG----------------TVSYASQEPWIFAATIRQNILFGLPYLRRRYADVIRVC 190
V G V + + + +I +NI G P + R+
Sbjct: 509 SVFYDGQDLAGLDVQAVRRQLGVVLQNGR---LMSGSIFENIAGGAPLTLDEAWEAARMA 565
Query: 191 ALQDDFDSLPNGDFTVVGERGASLSGGQKARINLARAVYKNADIYLLDDPLSAVD 245
L +D ++P G TV+ E G +LSGGQ+ R+ +ARA+ + I L D+ SA+D
Sbjct: 566 GLAEDIRAMPMGMHTVISEGGGTLSGGQRQRLLIARALVRKPRILLFDEATSALD 620
>gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated
ATPase domains [General function prediction only].
Length = 530
Score = 79.6 bits (197), Expect = 6e-17
Identities = 51/179 (28%), Positives = 81/179 (45%), Gaps = 31/179 (17%)
Query: 90 SLDNVTAQWSLQNADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVS 149
+L+N++ + + L VS+T P + ++G GAGK++LL I+ EL SG+V+
Sbjct: 5 TLENLSLAYGDR---PLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPDSGEVT 61
Query: 150 L--GGTVSYASQEPWIFA-ATIRQNILFGLPYLR---RRYADVI------------RVCA 191
G V Y SQEP + T+ ++ G LR + + A
Sbjct: 62 RPKGLRVGYLSQEPPLDPEKTVLDYVIEGFGELRELLAELEEAYALLADPDDELLAELEA 121
Query: 192 LQDDFDS----------LPNGDFTVVGERGASLSGGQKARINLARAVYKNADIYLLDDP 240
L ++ D L F +SLSGG + R+ LARA+ + D+ LLD+P
Sbjct: 122 LLEELDGWTLEARAEEALLGLGFPDEDRPVSSLSGGWRRRVALARALLEEPDLLLLDEP 180
Score = 69.2 bits (170), Expect = 2e-13
Identities = 42/151 (27%), Positives = 64/151 (42%), Gaps = 33/151 (21%)
Query: 110 VSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSLGGTV--SYASQEPWIFAAT 167
+S I+G GAGK++LL ++ EL SG V +G TV Y Q
Sbjct: 341 LSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELGPLSGTVKVGETVKIGYFDQH------- 393
Query: 168 IRQNILFG----LPYLRRRYADV----IRVCALQDDFDSLPNGDFTVVGE----RGASLS 215
++ L L L + D +R G F GE LS
Sbjct: 394 --RDELDPDKTVLEELSEGFPDGDEQEVRAYL----------GRFGFTGEDQEKPVGVLS 441
Query: 216 GGQKARINLARAVYKNADIYLLDDPLSAVDM 246
GG+KAR+ LA+ + + ++ LLD+P + +D+
Sbjct: 442 GGEKARLLLAKLLLQPPNLLLLDEPTNHLDI 472
>gnl|CDD|227590 COG5265, ATM1, ABC-type transport system involved in Fe-S cluster
assembly, permease and ATPase components
[Posttranslational modification, protein turnover,
chaperones].
Length = 497
Score = 78.9 bits (195), Expect = 1e-16
Identities = 52/157 (33%), Positives = 77/157 (49%), Gaps = 18/157 (11%)
Query: 107 LNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSLGG------TVSYA--- 157
LN +S T + I+G GAGK+++L ++ ++SG +++ G T
Sbjct: 279 LNGISFTIPLGKTVAIVGESGAGKSTILRLLFRFYDVNSGSITIDGQDIRDVTQQSLRRA 338
Query: 158 ----SQEPWIFAATIRQNILFGLPYLRRRYADVIRVC---ALQDDFDSLPNGDFTVVGER 210
Q+ +F TI NI +G P +V + D SLP G T VGER
Sbjct: 339 IGIVPQDTVLFNDTIAYNIKYGRPDAT--AEEVGAAAEAAQIHDFIQSLPEGYDTGVGER 396
Query: 211 GASLSGGQKARINLARAVYKNADIYLLDDPLSAVDMH 247
G LSGG+K R+ +AR + KN I +LD+ SA+D H
Sbjct: 397 GLKLSGGEKQRVAIARTILKNPPILILDEATSALDTH 433
>gnl|CDD|213213 cd03246, ABCC_Protease_Secretion, ATP-binding cassette domain of
PrtD, subfamily C. This family represents the ABC
component of the protease secretion system PrtD, a
60-kDa integral membrane protein sharing 37% identity
with HlyB, the ABC component of the alpha-hemolysin
secretion pathway, in the C-terminal domain. They export
degradative enzymes by using a type I protein secretion
system and lack an N-terminal signal peptide, but
contain a C-terminal secretion signal. The Type I
secretion apparatus is made up of three components, an
ABC transporter, a membrane fusion protein (MFP), and an
outer membrane protein (OMP). For the HlyA transporter
complex, HlyB (ABC transporter) and HlyD (MFP) reside in
the inner membrane of E. coli. The OMP component is
TolC, which is thought to interact with the MFP to form
a continuous channel across the periplasm from the
cytoplasm to the exterior. HlyB belongs to the family of
ABC transporters, which are ubiquitous, ATP-dependent
transmembrane pumps or channels. The spectrum of
transport substrates ranges from inorganic ions,
nutrients such as amino acids, sugars, or peptides,
hydrophobic drugs, to large polypeptides, such as HlyA.
Length = 173
Score = 74.9 bits (185), Expect = 1e-16
Identities = 47/169 (27%), Positives = 72/169 (42%), Gaps = 55/169 (32%)
Query: 90 SLDNVTAQWSLQNADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVS 149
++NV+ ++ L VS + +P + IIG G+GK++L +IL LR +SG+V
Sbjct: 2 EVENVSFRYP-GAEPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVR 60
Query: 150 LGGT-------------VSYASQEPWIFAATIRQNILFGLPYLRRRYADVIRVCALQDDF 196
L G V Y Q+ +F+ +I +NI
Sbjct: 61 LDGADISQWDPNELGDHVGYLPQDDELFSGSIAENI------------------------ 96
Query: 197 DSLPNGDFTVVGERGASLSGGQKARINLARAVYKNADIYLLDDPLSAVD 245
LSGGQ+ R+ LARA+Y N I +LD+P S +D
Sbjct: 97 -----------------LSGGQRQRLGLARALYGNPRILVLDEPNSHLD 128
>gnl|CDD|213202 cd03235, ABC_Metallic_Cations, ATP-binding cassette domain of the
metal-type transporters. This family includes
transporters involved in the uptake of various metallic
cations such as iron, manganese, and zinc. The ATPases
of this group of transporters are very similar to
members of iron-siderophore uptake family suggesting
that they share a common ancestor. The best
characterized metal-type ABC transporters are the
YfeABCD system of Y. pestis, the SitABCD system of
Salmonella enterica serovar Typhimurium, and the SitABCD
transporter of Shigella flexneri. Moreover other
uncharacterized homologs of these metal-type
transporters are mainly found in pathogens like
Haemophilus or enteroinvasive E. coli isolates.
Length = 213
Score = 76.0 bits (188), Expect = 1e-16
Identities = 51/190 (26%), Positives = 82/190 (43%), Gaps = 42/190 (22%)
Query: 90 SLDNVTAQWSLQNADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVS 149
++++T + L VS KP + I+G GAGK++LL IL L+ +SG +
Sbjct: 1 EVEDLTVSYGGHPV---LEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIR 57
Query: 150 LGGT--------VSYASQE---PWIFAATIRQNILFGL--------PYLRRRYADVIRVC 190
+ G + Y Q F ++R +L GL + A V
Sbjct: 58 VFGKPLEKERKRIGYVPQRRSIDRDFPISVRDVVLMGLYGHKGLFRRLSKADKAKVDE-- 115
Query: 191 ALQDDFDSLPNGDFTVVG------ERGASLSGGQKARINLARAVYKNADIYLLDDPLSAV 244
AL+ VG + LSGGQ+ R+ LARA+ ++ D+ LLD+P + V
Sbjct: 116 ALER------------VGLSELADRQIGELSGGQQQRVLLARALVQDPDLLLLDEPFAGV 163
Query: 245 DMHVGKHLFE 254
D + ++E
Sbjct: 164 DPKTQEDIYE 173
>gnl|CDD|224054 COG1131, CcmA, ABC-type multidrug transport system, ATPase
component [Defense mechanisms].
Length = 293
Score = 77.0 bits (190), Expect = 1e-16
Identities = 43/159 (27%), Positives = 79/159 (49%), Gaps = 31/159 (19%)
Query: 107 LNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSLGG------------TV 154
L+ VS +P ++ ++G GAGKT+LL I+ L+ +SG++ + G +
Sbjct: 21 LDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEILVLGYDVVKEPAKVRRRI 80
Query: 155 SYASQEPWIFAA-TIRQNI-----LFGLP--YLRRRYADVIRVCALQDDFDSLPNGDFTV 206
Y QEP ++ T+R+N+ L+GL R +++ + L+D +
Sbjct: 81 GYVPQEPSLYPELTVRENLEFFARLYGLSKEEAEERIEELLELFGLEDKANKKVRT---- 136
Query: 207 VGERGASLSGGQKARINLARAVYKNADIYLLDDPLSAVD 245
LSGG K R+++A A+ + ++ +LD+P S +D
Sbjct: 137 -------LSGGMKQRLSIALALLHDPELLILDEPTSGLD 168
>gnl|CDD|224043 COG1118, CysA, ABC-type sulfate/molybdate transport systems, ATPase
component [Inorganic ion transport and metabolism].
Length = 345
Score = 77.4 bits (191), Expect = 2e-16
Identities = 54/188 (28%), Positives = 84/188 (44%), Gaps = 38/188 (20%)
Query: 89 VSLDNVTAQWSLQNADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKV 148
+ ++NV ++ A L+ +S+ K +L ++G GAGK++LL II +G++
Sbjct: 3 IRINNVKKRFG---AFGALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRI 59
Query: 149 SLGGTVSYAS--------------QEPWIFA-ATIRQNILFGLPYL---------RRRYA 184
L G V + Q +F T+ NI FGL R R
Sbjct: 60 RLNGRVLFDVSNLAVRDRKVGFVFQHYALFPHMTVADNIAFGLKVRKERPSEAEIRARVE 119
Query: 185 DVIRVCALQDDFDSLPNGDFTVVGERGASLSGGQKARINLARAVYKNADIYLLDDPLSAV 244
+++R+ L+ D P A LSGGQ+ R+ LARA+ + LLD+P A+
Sbjct: 120 ELLRLVQLEGLADRYP-----------AQLSGGQRQRVALARALAVEPKVLLLDEPFGAL 168
Query: 245 DMHVGKHL 252
D V K L
Sbjct: 169 DAKVRKEL 176
>gnl|CDD|226970 COG4619, COG4619, ABC-type uncharacterized transport system, ATPase
component [General function prediction only].
Length = 223
Score = 74.9 bits (184), Expect = 3e-16
Identities = 50/165 (30%), Positives = 79/165 (47%), Gaps = 21/165 (12%)
Query: 107 LNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSLGGT------------- 153
LN +S++ + + I G G GK++LL I+ + + +SG + G
Sbjct: 19 LNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDVSTLKPEAYRQQ 78
Query: 154 VSYASQEPWIFAATIRQNILFGLPY-LRRRYADVIRVCALQDDFDSLPNGDFTVVGERGA 212
VSY +Q P +F T+ N++F P+ +R R D L F LP+ +++ +
Sbjct: 79 VSYCAQTPALFGDTVEDNLIF--PWQIRNRRPDRAAALDLLARFA-LPD---SILTKNIT 132
Query: 213 SLSGGQKARINLARAVYKNADIYLLDDPLSAVDMHVGKHLFEDCI 257
LSGG+K RI L R + I LLD+ SA+D K E+ I
Sbjct: 133 ELSGGEKQRIALIRNLQFMPKILLLDEITSALDES-NKRNIEEMI 176
>gnl|CDD|213196 cd03229, ABC_Class3, ATP-binding cassette domain of the binding
protein-dependent transport systems. This class is
comprised of all BPD (Binding Protein Dependent) systems
that are largely represented in archaea and eubacteria
and are primarily involved in scavenging solutes from
the environment. ABC transporters are a large family of
proteins involved in the transport of a wide variety of
different compounds, like sugars, ions, peptides, and
more complex organic molecules. The nucleotide binding
domain shows the highest similarity between all members
of the family. ABC transporters are a subset of
nucleotide hydrolases that contain a signature motif,
Q-loop, and H-loop/switch region, in addition to, the
Walker A motif/P-loop and Walker B motif commonly found
in a number of ATP- and GTP-binding and hydrolyzing
proteins.
Length = 178
Score = 73.8 bits (182), Expect = 3e-16
Identities = 44/140 (31%), Positives = 67/140 (47%), Gaps = 22/140 (15%)
Query: 107 LNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSLGGTVSYASQEPWIFAA 166
LN VS+ + ++ ++G G+GK++LL I SG + + G E
Sbjct: 16 LNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSILIDG-------EDL---T 65
Query: 167 TIRQNILFGLPYLRRRYADVIRVCALQDDFDSLPNGDFTVVGERGASLSGGQKARINLAR 226
+ + P LRRR V + DF P+ TV+ LSGGQ+ R+ LAR
Sbjct: 66 DLEDEL----PPLRRRIGMVFQ------DFALFPH--LTVLENIALGLSGGQQQRVALAR 113
Query: 227 AVYKNADIYLLDDPLSAVDM 246
A+ + D+ LLD+P SA+D
Sbjct: 114 ALAMDPDVLLLDEPTSALDP 133
>gnl|CDD|224046 COG1121, ZnuC, ABC-type Mn/Zn transport systems, ATPase component
[Inorganic ion transport and metabolism].
Length = 254
Score = 75.3 bits (186), Expect = 3e-16
Identities = 50/192 (26%), Positives = 85/192 (44%), Gaps = 42/192 (21%)
Query: 89 VSLDNVTAQWSLQNADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKV 148
+ ++N+T + + L +S++ + ++ +IG GAGK++LL IL L+ SSG++
Sbjct: 5 IEVENLTVSYGNRPV---LEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGEI 61
Query: 149 SLGG----------TVSYASQ---EPWIFAATIRQNILFGLPYLRRRYADVIRVCALQDD 195
+ G + Y Q F T++ +L G +
Sbjct: 62 KIFGKPVRKRRKRLRIGYVPQKSSVDRSFPITVKDVVLLGRYGKKGW------------- 108
Query: 196 FDSLPNGDFTVVGE-------------RGASLSGGQKARINLARAVYKNADIYLLDDPLS 242
F L D V E + LSGGQK R+ LARA+ +N D+ LLD+P +
Sbjct: 109 FRRLNKKDKEKVDEALERVGMEDLRDRQIGELSGGQKQRVLLARALAQNPDLLLLDEPFT 168
Query: 243 AVDMHVGKHLFE 254
VD+ K +++
Sbjct: 169 GVDVAGQKEIYD 180
>gnl|CDD|213192 cd03225, ABC_cobalt_CbiO_domain1, First domain of the ATP-binding
cassette component of cobalt transport system. Domain I
of the ABC component of a cobalt transport family found
in bacteria, archaea, and eukaryota. The transition
metal cobalt is an essential component of many enzymes
and must be transported into cells in appropriate
amounts when needed. This ABC transport system of the
CbiMNQO family is involved in cobalt transport in
association with the cobalamin (vitamin B12)
biosynthetic pathways. Most of cobalt (Cbi) transport
systems possess a separate CbiN component, the
cobalt-binding periplasmic protein, and they are encoded
by the conserved gene cluster cbiMNQO. Both the CbiM and
CbiQ proteins are integral cytoplasmic membrane
proteins, and the CbiO protein has the linker peptide
and the Walker A and B motifs commonly found in the
ATPase components of the ABC-type transport systems.
Length = 211
Score = 74.4 bits (184), Expect = 4e-16
Identities = 49/187 (26%), Positives = 81/187 (43%), Gaps = 34/187 (18%)
Query: 90 SLDNVTAQWSLQNADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVS 149
L N++ + A L+ +S+T K + I+G G+GK++LL ++ L +SG+V
Sbjct: 1 ELKNLSFSYP-DGARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVL 59
Query: 150 LGGT-------------VSYASQEP--WIFAATIRQNILFGLPYL-------RRRYADVI 187
+ G V Q P F T+ + + FGL L R + +
Sbjct: 60 VDGKDLTKLSLKELRRKVGLVFQNPDDQFFGPTVEEEVAFGLENLGLPEEEIEERVEEAL 119
Query: 188 RVCALQDDFDSLPNGDFTVVGERGASLSGGQKARINLARAVYKNADIYLLDDPLSAVDMH 247
+ L+ D P +LSGGQK R+ +A + + DI LLD+P + +D
Sbjct: 120 ELVGLEGLRDRSP-----------FTLSGGQKQRVAIAGVLAMDPDILLLDEPTAGLDPA 168
Query: 248 VGKHLFE 254
+ L E
Sbjct: 169 GRRELLE 175
>gnl|CDD|131197 TIGR02142, modC_ABC, molybdenum ABC transporter, ATP-binding
protein. This model represents the ATP-binding cassette
(ABC) protein of the three subunit molybdate ABC
transporter. The three proteins of this complex are
homologous to proteins of the sulfate ABC transporter.
Molybdenum may be used in nitrogenases of
nitrogen-fixing bacteria and in molybdopterin cofactors.
In some cases, molybdate may be transported by a sulfate
transporter rather than by a specific molybdate
transporter [Transport and binding proteins, Anions].
Length = 354
Score = 76.3 bits (188), Expect = 4e-16
Identities = 43/167 (25%), Positives = 70/167 (41%), Gaps = 41/167 (24%)
Query: 103 ADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSLGGT--------- 153
AD TL +T I G G+GKT+L+ +I R G++ L G
Sbjct: 16 ADFTLPGQGVT-------AIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRKGI 68
Query: 154 --------VSYASQEPWIFA-ATIRQNILFGL-----PYLRRRYADVIRVCALQDDFDSL 199
+ Y QE +F ++R N+ +G+ R + VI + + L
Sbjct: 69 FLPPEKRRIGYVFQEARLFPHLSVRGNLRYGMKRARPSERRISFERVIELLGIGHLLGRL 128
Query: 200 PNGDFTVVGERGASLSGGQKARINLARAVYKNADIYLLDDPLSAVDM 246
P LSGG+K R+ + RA+ + + L+D+PL+A+D
Sbjct: 129 PG-----------RLSGGEKQRVAIGRALLSSPRLLLMDEPLAALDD 164
>gnl|CDD|183016 PRK11176, PRK11176, lipid transporter ATP-binding/permease protein;
Provisional.
Length = 582
Score = 77.0 bits (190), Expect = 5e-16
Identities = 49/179 (27%), Positives = 84/179 (46%), Gaps = 24/179 (13%)
Query: 86 KGHVSLDNVTAQWSLQNAD-LTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRIS 144
KG + NVT ++ + L ++ + ++G G+GK+++ +++ I
Sbjct: 339 KGDIEFRNVT--FTYPGKEVPALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDID 396
Query: 145 SGKVSLGGT-------------VSYASQEPWIFAATIRQNILFGLPYLRRRY--ADVIRV 189
G++ L G V+ SQ +F TI NI + +Y +
Sbjct: 397 EGEILLDGHDLRDYTLASLRNQVALVSQNVHLFNDTIANNIAYAR---TEQYSREQIEEA 453
Query: 190 C--ALQDDF-DSLPNGDFTVVGERGASLSGGQKARINLARAVYKNADIYLLDDPLSAVD 245
A DF + + NG TV+GE G LSGGQ+ RI +ARA+ +++ I +LD+ SA+D
Sbjct: 454 ARMAYAMDFINKMDNGLDTVIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALD 512
>gnl|CDD|224059 COG1136, SalX, ABC-type antimicrobial peptide transport system,
ATPase component [Defense mechanisms].
Length = 226
Score = 74.1 bits (183), Expect = 7e-16
Identities = 43/192 (22%), Positives = 85/192 (44%), Gaps = 36/192 (18%)
Query: 89 VSLDNVTAQWSLQNADLT-LNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGK 147
+ L NV+ + L + L V++ + + I+G G+GK++LL+++ + +SG+
Sbjct: 2 IELKNVSKIYGLGGEKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGE 61
Query: 148 VSLGGT-VSYASQEPW----------IF-------AATIRQNILFGLPY-------LRRR 182
V + G ++ S++ +F T+ +N+ L +R
Sbjct: 62 VLINGKDLTKLSEKELAKLRRKKIGFVFQNFNLLPDLTVLENVELPLLIAGKSAGRRKRA 121
Query: 183 YADVIRVCALQDDFDSLPNGDFTVVGERGASLSGGQKARINLARAVYKNADIYLLDDPLS 242
+++ V L+D ++ + LSGGQ+ R+ +ARA+ N I L D+P
Sbjct: 122 AEELLEVLGLEDRLL----------KKKPSELSGGQQQRVAIARALINNPKIILADEPTG 171
Query: 243 AVDMHVGKHLFE 254
+D K + E
Sbjct: 172 NLDSKTAKEVLE 183
>gnl|CDD|213214 cd03247, ABCC_cytochrome_bd, ATP-binding cassette domain of CydCD,
subfamily C. The CYD subfamily implicated in cytochrome
bd biogenesis. The CydC and CydD proteins are important
for the formation of cytochrome bd terminal oxidase of
E. coli and it has been proposed that they were
necessary for biosynthesis of the cytochrome bd quinol
oxidase and for periplasmic c-type cytochromes. CydCD
were proposed to determine a heterooligomeric complex
important for heme export into the periplasm or to be
involved in the maintenance of the proper redox state of
the periplasmic space. In Bacillus subtilis, the absence
of CydCD does not affect the presence of halo-cytochrome
c in the membrane and this observation suggests that
CydCD proteins are not involved in the export of heme in
this organism.
Length = 178
Score = 73.1 bits (180), Expect = 7e-16
Identities = 38/161 (23%), Positives = 66/161 (40%), Gaps = 57/161 (35%)
Query: 97 QWSLQNADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSLGGT--- 153
Q L+N L L K + ++G G+GK++LL ++ +L+ G+++L G
Sbjct: 15 QQVLKNLSLEL-------KQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGVPVS 67
Query: 154 ---------VSYASQEPWIFAATIRQNILFGLPYLRRRYADVIRVCALQDDFDSLPNGDF 204
+S +Q P++F T+R N+
Sbjct: 68 DLEKALSSLISVLNQRPYLFDTTLRNNL-------------------------------- 95
Query: 205 TVVGERGASLSGGQKARINLARAVYKNADIYLLDDPLSAVD 245
G SGG++ R+ LAR + ++A I LLD+P +D
Sbjct: 96 ------GRRFSGGERQRLALARILLQDAPIVLLDEPTVGLD 130
>gnl|CDD|215650 pfam00005, ABC_tran, ABC transporter. ABC transporters for a large
family of proteins responsible for translocation of a
variety of compounds across biological membranes. ABC
transporters are the largest family of proteins in many
completely sequenced bacteria. ABC transporters are
composed of two copies of this domain and two copies of
a transmembrane domain pfam00664. These four domains may
belong to a single polypeptide as in human CFTR, or
belong in different polypeptide chains.
Length = 119
Score = 71.2 bits (175), Expect = 9e-16
Identities = 37/129 (28%), Positives = 58/129 (44%), Gaps = 27/129 (20%)
Query: 131 TSLLHIILNELRISSGKVSLGGT--------------VSYASQEPWIFA-ATIRQNILFG 175
++LL +I L+ +SG + L G + Q+P +F T+R+N+ FG
Sbjct: 1 STLLKLITGLLQPTSGTILLDGEDGTGLSSRKLLRKRIGVVFQDPQLFPELTVRENLFFG 60
Query: 176 LP--YLRRRYADVIRVCALQDDFDSLPNGDFTVVGERGASLSGGQKARINLARAVYKNAD 233
L R + + L D D E +LSGGQK R+ +ARA+ K
Sbjct: 61 LRDKEADARAEEALERVGLPDFLDR----------EPVGTLSGGQKQRVAIARALLKKPK 110
Query: 234 IYLLDDPLS 242
+ LLD+P +
Sbjct: 111 LLLLDEPTA 119
>gnl|CDD|213179 cd00267, ABC_ATPase, ATP-binding cassette transporter
nucleotide-binding domain. ABC transporters are a large
family of proteins involved in the transport of a wide
variety of different compounds, like sugars, ions,
peptides, and more complex organic molecules. The
nucleotide-binding domain shows the highest similarity
between all members of the family. ABC transporters are
a subset of nucleotide hydrolases that contain a
signature motif, Q-loop, and H-loop/switch region, in
addition to, the Walker A motif/P-loop and Walker B
motif commonly found in a number of ATP- and GTP-binding
and hydrolyzing proteins.
Length = 157
Score = 71.9 bits (177), Expect = 1e-15
Identities = 38/141 (26%), Positives = 61/141 (43%), Gaps = 41/141 (29%)
Query: 107 LNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSLGGTVSYASQEPWIFAA 166
L+ VS+T K ++ ++G G+GK++LL I L+ +SG++ + G
Sbjct: 15 LDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEILIDG-------------- 60
Query: 167 TIRQNILFGLPYLRRRYADVIRVCALQDDFDSLPNGDFTVVGERGASLSGGQKARINLAR 226
++I RR + Q LSGGQ+ R+ LAR
Sbjct: 61 ---KDIAKLPLEELRRRIGYV----PQ--------------------LSGGQRQRVALAR 93
Query: 227 AVYKNADIYLLDDPLSAVDMH 247
A+ N D+ LLD+P S +D
Sbjct: 94 ALLLNPDLLLLDEPTSGLDPA 114
>gnl|CDD|236865 PRK11160, PRK11160, cysteine/glutathione ABC transporter
membrane/ATP-binding component; Reviewed.
Length = 574
Score = 74.9 bits (185), Expect = 3e-15
Identities = 45/176 (25%), Positives = 82/176 (46%), Gaps = 16/176 (9%)
Query: 79 NSVHSNGKGHVSLDNVTAQWSLQNADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIIL 138
S + + ++L+NV+ + L +S+ K + ++G G GK++LL ++
Sbjct: 329 TSTAAADQVSLTLNNVSFTYP-DQPQPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLT 387
Query: 139 NELRISSGKVSLGGT-------------VSYASQEPWIFAATIRQNILFGLPYLR-RRYA 184
G++ L G +S SQ +F+AT+R N+L P
Sbjct: 388 RAWDPQQGEILLNGQPIADYSEAALRQAISVVSQRVHLFSATLRDNLLLAAPNASDEALI 447
Query: 185 DVIRVCALQDDFDSLPNGDFTVVGERGASLSGGQKARINLARAVYKNADIYLLDDP 240
+V++ L+ + G +GE G LSGG++ R+ +ARA+ +A + LLD+P
Sbjct: 448 EVLQQVGLEKLLED-DKGLNAWLGEGGRQLSGGEQRRLGIARALLHDAPLLLLDEP 502
>gnl|CDD|226929 COG4559, COG4559, ABC-type hemin transport system, ATPase component
[Inorganic ion transport and metabolism].
Length = 259
Score = 72.0 bits (177), Expect = 7e-15
Identities = 49/192 (25%), Positives = 78/192 (40%), Gaps = 37/192 (19%)
Query: 89 VSLDNVTAQWSLQNADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKV 148
+ +N++ +SL L L+ VS+ +P ++ I+G GAGK++LL + EL SG+V
Sbjct: 2 IRAENLS--YSLAGRRL-LDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPDSGEV 58
Query: 149 SLGGTVSYASQEPWIFA---ATIRQNILFGLPYLRR-----------------RYADVIR 188
+L G V S P A A + QN P+ + +
Sbjct: 59 TLNG-VPLNSWPPEELARHRAVLPQNSSLAFPFTVQEVVQMGRIPHRSGREPEEDERIAA 117
Query: 189 VCALQDDFDSLPNGDFTVVGERGASLSGGQKARINLAR------AVYKNADIYLLDDPLS 242
D L D+ +LSGG++ R+ LAR + LD+P S
Sbjct: 118 QALAATDLSGLAGRDYR-------TLSGGEQQRVQLARVLAQLWPPVPSGRWLFLDEPTS 170
Query: 243 AVDMHVGKHLFE 254
A+D+ H
Sbjct: 171 ALDIAHQHHTLR 182
>gnl|CDD|213185 cd03218, ABC_YhbG, ATP-binding cassette component of YhbG transport
system. The ABC transporters belonging to the YhbG
family are similar to members of the Mj1267_LivG family,
which is involved in the transport of branched-chain
amino acids. The genes yhbG and yhbN are located in a
single operon and may function together in cell envelope
during biogenesis. YhbG is the putative ATP-binding
cassette component and YhbN is the putative
periplasmic-binding protein. Depletion of each gene
product leads to growth arrest, irreversible cell damage
and loss of viability in E. coli. The YhbG homolog
(NtrA) is essential in Rhizobium meliloti, a symbiotic
nitrogen-fixing bacterium.
Length = 232
Score = 71.0 bits (175), Expect = 1e-14
Identities = 46/159 (28%), Positives = 76/159 (47%), Gaps = 29/159 (18%)
Query: 107 LNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSLGGT------------- 153
+N VS++ K ++ ++G GAGKT+ ++I+ ++ SGK+ L G
Sbjct: 16 VNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDITKLPMHKRARL 75
Query: 154 -VSYASQEPWIFAA-TIRQNIL-----FGLPYLRRRYADVIRVCALQDDFDSLPNGDFTV 206
+ Y QE IF T+ +NIL GL R ++ L ++F
Sbjct: 76 GIGYLPQEASIFRKLTVEENILAVLEIRGLSKKERE----EKLEELLEEFHITHLRK--- 128
Query: 207 VGERGASLSGGQKARINLARAVYKNADIYLLDDPLSAVD 245
+ +SLSGG++ R+ +ARA+ N LLD+P + VD
Sbjct: 129 --SKASSLSGGERRRVEIARALATNPKFLLLDEPFAGVD 165
>gnl|CDD|182331 PRK10247, PRK10247, putative ABC transporter ATP-binding protein
YbbL; Provisional.
Length = 225
Score = 70.9 bits (174), Expect = 1e-14
Identities = 46/156 (29%), Positives = 75/156 (48%), Gaps = 22/156 (14%)
Query: 107 LNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSLGGT------------- 153
LN +S + + + I G G GK++LL I+ + + +SG + G
Sbjct: 23 LNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDISTLKPEIYRQQ 82
Query: 154 VSYASQEPWIFAATIRQNILFGLPYLRRRYADVIRVCALQDDFD--SLPNGDFTVVGERG 211
VSY +Q P +F T+ N++F P+ R DD + +LP+ T++ +
Sbjct: 83 VSYCAQTPTLFGDTVYDNLIF--PWQIRNQQPDPA--IFLDDLERFALPD---TILTKNI 135
Query: 212 ASLSGGQKARINLARAVYKNADIYLLDDPLSAVDMH 247
A LSGG+K RI+L R + + LLD+ SA+D
Sbjct: 136 AELSGGEKQRISLIRNLQFMPKVLLLDEITSALDES 171
>gnl|CDD|213227 cd03260, ABC_PstB_phosphate_transporter, ATP-binding cassette
domain of the phosphate transport system. Phosphate
uptake is of fundamental importance in the cell
physiology of bacteria because phosphate is required as
a nutrient. The Pst system of E. coli comprises four
distinct subunits encoded by the pstS, pstA, pstB, and
pstC genes. The PstS protein is a phosphate-binding
protein located in the periplasmic space. PstA and PstC
are hydrophobic and they form the transmembrane portion
of the Pst system. PstB is the catalytic subunit, which
couples the energy of ATP hydrolysis to the import of
phosphate across cellular membranes through the Pst
system, often referred as ABC-protein. PstB belongs to
one of the largest superfamilies of proteins
characterized by a highly conserved adenosine
triphosphate (ATP) binding cassette (ABC), which is also
a nucleotide binding domain (NBD).
Length = 227
Score = 70.7 bits (174), Expect = 1e-14
Identities = 47/167 (28%), Positives = 73/167 (43%), Gaps = 37/167 (22%)
Query: 107 LNAVSITFKPKQLACIIGAIGAGKTSLLHII--LNELRI---SSGKVSLGGTVSYAS--- 158
L +S+ ++ +IG G GK++LL ++ LN+L G+V L G Y
Sbjct: 16 LKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGKDIYDLDVD 75
Query: 159 ------------QEPWIFAATIRQNILFGLPY--------LRRRYADVIRVCALQDDFDS 198
Q+P F +I N+ +GL L R + +R AL D+
Sbjct: 76 VLELRRRVGMVFQKPNPFPGSIYDNVAYGLRLHGIKLKEELDERVEEALRKAALWDEVKD 135
Query: 199 LPNGDFTVVGERGASLSGGQKARINLARAVYKNADIYLLDDPLSAVD 245
+ LSGGQ+ R+ LARA+ ++ LLD+P SA+D
Sbjct: 136 RLHA---------LGLSGGQQQRLCLARALANEPEVLLLDEPTSALD 173
>gnl|CDD|213197 cd03230, ABC_DR_subfamily_A, ATP-binding cassette domain of the
drug resistance transporter and related proteins,
subfamily A. This family of ATP-binding proteins
belongs to a multi-subunit transporter involved in drug
resistance (BcrA and DrrA), nodulation, lipid transport,
and lantibiotic immunity. In bacteria and archaea, these
transporters usually include an ATP-binding protein and
one or two integral membrane proteins. Eukaryotic
systems of the ABCA subfamily display ABC domains that
are quite similar to this family. The ATP-binding domain
shows the highest similarity between all members of the
ABC transporter family. ABC transporters are a subset of
nucleotide hydrolases that contain a signature motif,
Q-loop, and H-loop/switch region, in addition to, the
Walker A motif/P-loop and Walker B motif commonly found
in a number of ATP- and GTP-binding and hydrolyzing
proteins.
Length = 173
Score = 69.3 bits (171), Expect = 2e-14
Identities = 38/139 (27%), Positives = 69/139 (49%), Gaps = 27/139 (19%)
Query: 107 LNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSLGGTVSYASQEPWIFAA 166
L+ +S+T + ++ ++G GAGKT+L+ IIL L+ SG++ + G ++
Sbjct: 16 LDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEIKVLG------KDIKKEPE 69
Query: 167 TIRQNILFGLPYLRRRYADVIRVCALQDDFDSLPNGDFTVVGERGASLSGGQKARINLAR 226
+++ I + LP + SL + TV LSGG K R+ LA+
Sbjct: 70 EVKRRIGY-LP-----------------EEPSLY-ENLTV--RENLKLSGGMKQRLALAQ 108
Query: 227 AVYKNADIYLLDDPLSAVD 245
A+ + ++ +LD+P S +D
Sbjct: 109 ALLHDPELLILDEPTSGLD 127
>gnl|CDD|182778 PRK10851, PRK10851, sulfate/thiosulfate transporter subunit;
Provisional.
Length = 353
Score = 71.7 bits (176), Expect = 2e-14
Identities = 56/165 (33%), Positives = 75/165 (45%), Gaps = 26/165 (15%)
Query: 107 LNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSLGGT-----------VS 155
LN +S+ Q+ ++G G+GKT+LL II +SG + GT V
Sbjct: 18 LNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVSRLHARDRKVG 77
Query: 156 YASQEPWIFA-ATIRQNILFGLPYLRRRY---ADVIR--VCALQD--DFDSLPNGDFTVV 207
+ Q +F T+ NI FGL L RR A I+ V L + L +
Sbjct: 78 FVFQHYALFRHMTVFDNIAFGLTVLPRRERPNAAAIKAKVTQLLEMVQLAHLAD------ 131
Query: 208 GERGASLSGGQKARINLARAVYKNADIYLLDDPLSAVDMHVGKHL 252
A LSGGQK R+ LARA+ I LLD+P A+D V K L
Sbjct: 132 -RYPAQLSGGQKQRVALARALAVEPQILLLDEPFGALDAQVRKEL 175
>gnl|CDD|224060 COG1137, YhbG, ABC-type (unclassified) transport system, ATPase
component [General function prediction only].
Length = 243
Score = 70.3 bits (173), Expect = 2e-14
Identities = 43/157 (27%), Positives = 72/157 (45%), Gaps = 23/157 (14%)
Query: 107 LNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSLGGT------------- 153
+N VS+ ++ ++G GAGKT+ ++I+ +R SGK+ L
Sbjct: 20 VNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPDSGKILLDDEDITKLPMHKRARL 79
Query: 154 -VSYASQEPWIFAA-TIRQNILFGLPY---LRRRYADVIRVCALQDDFDSLPNGDFTVVG 208
+ Y QE IF T+ NI+ L ++ + AL ++F +
Sbjct: 80 GIGYLPQEASIFRKLTVEDNIMAVLEIREKDLKKAERKEELDALLEEFHITH-----LRD 134
Query: 209 ERGASLSGGQKARINLARAVYKNADIYLLDDPLSAVD 245
+ SLSGG++ R+ +ARA+ N LLD+P + VD
Sbjct: 135 SKAYSLSGGERRRVEIARALAANPKFILLDEPFAGVD 171
>gnl|CDD|213193 cd03226, ABC_cobalt_CbiO_domain2, Second domain of the ATP-binding
cassette component of cobalt transport system. Domain
II of the ABC component of a cobalt transport family
found in bacteria, archaea, and eukaryota. The
transition metal cobalt is an essential component of
many enzymes and must be transported into cells in
appropriate amounts when needed. The CbiMNQO family ABC
transport system is involved in cobalt transport in
association with the cobalamin (vitamin B12)
biosynthetic pathways. Most cobalt (Cbi) transport
systems possess a separate CbiN component, the
cobalt-binding periplasmic protein, and they are encoded
by the conserved gene cluster cbiMNQO. Both the CbiM and
CbiQ proteins are integral cytoplasmic membrane
proteins, and the CbiO protein has the linker peptide
and the Walker A and B motifs commonly found in the
ATPase components of the ABC-type transport systems.
Length = 205
Score = 69.6 bits (171), Expect = 2e-14
Identities = 41/156 (26%), Positives = 70/156 (44%), Gaps = 26/156 (16%)
Query: 105 LTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSLGG----------TV 154
L+ +S+ ++ + G GAGKT+L I+ ++ SSG + L G ++
Sbjct: 14 EILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNGKPIKAKERRKSI 73
Query: 155 SYASQEP--WIFAATIRQNILFGLPYLRRRYAD---VIRVCALQDDFDSLPNGDFTVVGE 209
Y Q+ +F ++R+ +L GL L V++ L + P
Sbjct: 74 GYVMQDVDYQLFTDSVREELLLGLKELDAGNEQAETVLKDLDLYALKERHP--------- 124
Query: 210 RGASLSGGQKARINLARAVYKNADIYLLDDPLSAVD 245
SLSGGQK R+ +A A+ D+ + D+P S +D
Sbjct: 125 --LSLSGGQKQRLAIAAALLSGKDLLIFDEPTSGLD 158
>gnl|CDD|240339 PTZ00265, PTZ00265, multidrug resistance protein (mdr1); Provisional.
Length = 1466
Score = 72.0 bits (176), Expect = 3e-14
Identities = 49/106 (46%), Positives = 61/106 (57%), Gaps = 6/106 (5%)
Query: 155 SYASQEPWIFAATIRQNILFGLPYLRRRYADVIRVC--ALQDDF-DSLPNGDFTVVGERG 211
S SQEP +F +I +NI FG R DV R C A D+F +SLPN T VG G
Sbjct: 1299 SIVSQEPMLFNMSIYENIKFGKEDATRE--DVKRACKFAAIDEFIESLPNKYDTNVGPYG 1356
Query: 212 ASLSGGQKARINLARAVYKNADIYLLDDPLSAVDMHVGKHLFEDCI 257
SLSGGQK RI +ARA+ + I LLD+ S++D + K L E I
Sbjct: 1357 KSLSGGQKQRIAIARALLREPKILLLDEATSSLDSNSEK-LIEKTI 1401
Score = 52.3 bits (125), Expect = 1e-07
Identities = 28/79 (35%), Positives = 46/79 (58%), Gaps = 8/79 (10%)
Query: 175 GLPYLRRRY-----ADVIRVCA---LQDDFDSLPNGDFTVVGERGASLSGGQKARINLAR 226
L +R+ Y ++V+ V + D +LP+ T+VG + LSGGQK RI++AR
Sbjct: 533 ELIEMRKNYQTIKDSEVVDVSKKVLIHDFVSALPDKYETLVGSNASKLSGGQKQRISIAR 592
Query: 227 AVYKNADIYLLDDPLSAVD 245
A+ +N I +LD+ S++D
Sbjct: 593 AIIRNPKILILDEATSSLD 611
>gnl|CDD|224047 COG1122, CbiO, ABC-type cobalt transport system, ATPase component
[Inorganic ion transport and metabolism].
Length = 235
Score = 69.6 bits (171), Expect = 4e-14
Identities = 40/170 (23%), Positives = 72/170 (42%), Gaps = 34/170 (20%)
Query: 99 SLQNADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSLGGTVSYAS 158
L VS+ + + +IG G+GK++LL ++ L+ +SG+V + G + +
Sbjct: 12 RYPGRKAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEVLVDGLDTSSE 71
Query: 159 QEPW----------------IFAATIRQNILFGLPYL-------RRRYADVIRVCALQDD 195
+ +F T+ + FGL L R A+ + + L++
Sbjct: 72 KSLLELRQKVGLVFQNPDDQLFGPTVEDEVAFGLENLGLPREEIEERVAEALELVGLEEL 131
Query: 196 FDSLPNGDFTVVGERGASLSGGQKARINLARAVYKNADIYLLDDPLSAVD 245
D P +LSGGQK R+ +A + +I LLD+P + +D
Sbjct: 132 LDRPPF-----------NLSGGQKQRVAIAGVLAMGPEILLLDEPTAGLD 170
>gnl|CDD|213268 cd03301, ABC_MalK_N, The N-terminal ATPase domain of the maltose
transporter, MalK. ATP binding cassette (ABC) proteins
function from bacteria to human, mediating the
translocation of substances into and out of cells or
organelles. ABC transporters contain two
transmembrane-spanning domains (TMDs) or subunits and
two nucleotide binding domains (NBDs) or subunits that
couple transport to the hydrolysis of ATP. In the
maltose transport system, the periplasmic maltose
binding protein (MBP) stimulates the ATPase activity of
the membrane-associated transporter, which consists of
two transmembrane subunits, MalF and MalG, and two
copies of the ATP binding subunit, MalK, and becomes
tightly bound to the transporter in the catalytic
transition state, ensuring that maltose is passed to the
transporter as ATP is hydrolyzed.
Length = 213
Score = 68.4 bits (168), Expect = 6e-14
Identities = 45/184 (24%), Positives = 80/184 (43%), Gaps = 43/184 (23%)
Query: 89 VSLDNVTAQWSLQNADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKV 148
V L+NVT ++ A L+ +++ + ++G G GKT+ L +I +SG++
Sbjct: 1 VELENVTKRFGNVTA---LDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRI 57
Query: 149 SLGGTV----------------SYASQEPWIFA-ATIRQNILFGL-------PYLRRRYA 184
+GG +YA ++ T+ NI FGL + R
Sbjct: 58 YIGGRDVTDLPPKDRDIAMVFQNYA-----LYPHMTVYDNIAFGLKLRKVPKDEIDERVR 112
Query: 185 DVIRVCALQDDFDSLPNGDFTVVGERGASLSGGQKARINLARAVYKNADIYLLDDPLSAV 244
+V + ++ D P LSGGQ+ R+ L RA+ + ++L+D+PLS +
Sbjct: 113 EVAELLQIEHLLDRKP-----------KQLSGGQRQRVALGRAIVREPKVFLMDEPLSNL 161
Query: 245 DMHV 248
D +
Sbjct: 162 DAKL 165
>gnl|CDD|233596 TIGR01846, type_I_sec_HlyB, type I secretion system ABC
transporter, HlyB family. Type I protein secretion is a
system in some Gram-negative bacteria to export proteins
(often proteases) across both inner and outer membranes
to the extracellular medium. This is one of three
proteins of the type I secretion apparatus. Targeted
proteins are not cleaved at the N-terminus, but rather
carry signals located toward the extreme C-terminus to
direct type I secretion [Protein fate, Protein and
peptide secretion and trafficking].
Length = 694
Score = 70.9 bits (174), Expect = 7e-14
Identities = 50/176 (28%), Positives = 89/176 (50%), Gaps = 19/176 (10%)
Query: 86 KGHVSLDNVTAQWSLQNADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISS 145
+G ++ +N+ +++ ++ L+ +++ KP + I+G G+GK++L ++
Sbjct: 453 RGAITFENIRFRYA-PDSPEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQH 511
Query: 146 GKVSLGG-------------TVSYASQEPWIFAATIRQNILF---GLPYLRRRYADVIRV 189
G+V + G + QE +F+ +IR NI G P+ +A ++
Sbjct: 512 GQVLVDGVDLAIADPAWLRRQMGVVLQENVLFSRSIRDNIALCNPGAPFEHVIHA--AKL 569
Query: 190 CALQDDFDSLPNGDFTVVGERGASLSGGQKARINLARAVYKNADIYLLDDPLSAVD 245
D LP G T VGE+GA+LSGGQ+ RI +ARA+ N I + D+ SA+D
Sbjct: 570 AGAHDFISELPQGYNTEVGEKGANLSGGQRQRIAIARALVGNPRILIFDEATSALD 625
>gnl|CDD|213222 cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the
transporters involved in export of lipoprotein and
macrolide, and cell division protein. This family is
comprised of MJ0796 ATP-binding cassette,
macrolide-specific ABC-type efflux carrier (MacAB), and
proteins involved in cell division (FtsE), and release
of lipoproteins from the cytoplasmic membrane (LolCDE).
They are clustered together phylogenetically. MacAB is
an exporter that confers resistance to macrolides, while
the LolCDE system is not a transporter at all. An FtsE
null mutants showed filamentous growth and appeared
viable on high salt medium only, indicating a role for
FtsE in cell division and/or salt transport. The LolCDE
complex catalyzes the release of lipoproteins from the
cytoplasmic membrane prior to their targeting to the
outer membrane.
Length = 218
Score = 68.3 bits (168), Expect = 7e-14
Identities = 42/183 (22%), Positives = 77/183 (42%), Gaps = 37/183 (20%)
Query: 89 VSLDNVTAQWSLQNADLT-LNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGK 147
+ L N++ + + L VS++ + + I+G G+GK++LL+I+ R +SG+
Sbjct: 1 IELKNLSKTYGGGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGE 60
Query: 148 VSLGGT-VSYASQEPW----------IFAA-------TIRQNILFGLPYLRRRYADVIRV 189
V + GT +S S++ +F + T +N+ L +
Sbjct: 61 VRVDGTDISKLSEKELAAFRRRHIGFVFQSFNLLPDLTALENVELPLLLAGVPKKERRER 120
Query: 190 CA-------LQDDFDSLPNGDFTVVGERGASLSGGQKARINLARAVYKNADIYLLDDPLS 242
L D + P+ LSGGQ+ R+ +ARA+ + I L D+P
Sbjct: 121 AEELLERVGLGDRLNHYPS-----------ELSGGQQQRVAIARALANDPKIILADEPTG 169
Query: 243 AVD 245
+D
Sbjct: 170 NLD 172
>gnl|CDD|213265 cd03298, ABC_ThiQ_thiamine_transporter, ATP-binding cassette domain
of the thiamine transport system. Part of the
binding-protein-dependent transport system tbpA-thiPQ
for thiamine and TPP. Probably responsible for the
translocation of thiamine across the membrane. ABC
transporters are a large family of proteins involved in
the transport of a wide variety of different compounds,
like sugars, ions, peptides, and more complex organic
molecules. The nucleotide binding domain shows the
highest similarity between all members of the family.
ABC transporters are a subset of nucleotide hydrolases
that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing proteins.
Length = 211
Score = 68.3 bits (167), Expect = 8e-14
Identities = 49/172 (28%), Positives = 78/172 (45%), Gaps = 27/172 (15%)
Query: 89 VSLDNVTAQWSLQNADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKV 148
V LD + +S + +TF ++ I+G G+GK++LL++I SG+V
Sbjct: 1 VRLDKIR--FSYGEQPMHF---DLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRV 55
Query: 149 SLGGT-----------VSYASQEPWIFA-ATIRQNILFGL-PYLRRRYAD--VIRVCALQ 193
+ G VS QE +FA T+ QN+ GL P L+ D I V +
Sbjct: 56 LINGVDVTAAPPADRPVSMLFQENNLFAHLTVEQNVGLGLSPGLKLTAEDRQAIEVALAR 115
Query: 194 DDFDSLPNGDFTVVGERGASLSGGQKARINLARAVYKNADIYLLDDPLSAVD 245
L LSGG++ R+ LAR + ++ + LLD+P +A+D
Sbjct: 116 VGLAGL-------EKRLPGELSGGERQRVALARVLVRDKPVLLLDEPFAALD 160
>gnl|CDD|130041 TIGR00968, 3a0106s01, sulfate ABC transporter, ATP-binding protein.
[Transport and binding proteins, Anions].
Length = 237
Score = 68.7 bits (168), Expect = 8e-14
Identities = 48/165 (29%), Positives = 75/165 (45%), Gaps = 30/165 (18%)
Query: 107 LNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSLGGT-----------VS 155
L+ V++ L ++G G+GK++LL II + SG++ L G +
Sbjct: 16 LDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPDSGRIRLNGQDATRVHARDRKIG 75
Query: 156 YASQEPWIFA-ATIRQNILFGLPYLRR-------RYADVIRVCALQDDFDSLPNGDFTVV 207
+ Q +F T+R NI FGL + R +++ + L+ D PN
Sbjct: 76 FVFQHYALFKHLTVRDNIAFGLEIRKHPKAKIKARVEELLELVQLEGLGDRYPN------ 129
Query: 208 GERGASLSGGQKARINLARAVYKNADIYLLDDPLSAVDMHVGKHL 252
LSGGQ+ R+ LARA+ + LLD+P A+D V K L
Sbjct: 130 -----QLSGGQRQRVALARALAVEPQVLLLDEPFGALDAKVRKEL 169
>gnl|CDD|226927 COG4555, NatA, ABC-type Na+ transport system, ATPase component
[Energy production and conversion / Inorganic ion
transport and metabolism].
Length = 245
Score = 68.6 bits (168), Expect = 9e-14
Identities = 42/176 (23%), Positives = 71/176 (40%), Gaps = 45/176 (25%)
Query: 105 LTLNAVSITFKPKQLAC--------------IIGAIGAGKTSLLHIILNELRISSGKVSL 150
L + ++ ++ K A ++G GAGKT+LL +I L SGKV++
Sbjct: 2 LEVTDLTKSYGSKVQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDSGKVTI 61
Query: 151 GG--TVSYAS-----------QEPWIFAATIRQNIL-FGLPY------LRRRYADVIRVC 190
G TV S + T R+N+ F ++ R A++ +
Sbjct: 62 DGVDTVRDPSFVRRKIGVLFGERGLYARLTARENLKYFARLNGLSRKEIKARIAELSKRL 121
Query: 191 ALQDDFDSLPNGDFTVVGERGASLSGGQKARINLARAVYKNADIYLLDDPLSAVDM 246
L + D R S G K ++ +ARA+ + I +LD+P S +D+
Sbjct: 122 QLLEYLD-----------RRVGEFSTGMKQKVAIARALVHDPSILVLDEPTSGLDI 166
>gnl|CDD|234152 TIGR03265, PhnT2, putative 2-aminoethylphosphonate ABC transporter,
ATP-binding protein. This ABC transporter ATP-binding
protein is found in a number of genomes in operon-like
contexts strongly suggesting a substrate specificity for
2-aminoethylphosphonate (2-AEP). The characterized
PhnSTUV system is absent in the genomes in which this
system is found. These genomes encode systems for the
catabolism of 2-AEP, making the need for a
2-AEP-specific transporter likely [Transport and binding
proteins, Amino acids, peptides and amines].
Length = 353
Score = 69.7 bits (171), Expect = 1e-13
Identities = 58/185 (31%), Positives = 87/185 (47%), Gaps = 33/185 (17%)
Query: 87 GHVSLDNVTAQWSLQNADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSG 146
++S+DN+ ++ A L +S++ K + C++G G GKT+LL II R ++G
Sbjct: 3 PYLSIDNIRKRF---GAFTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAG 59
Query: 147 KVSLGGTV----------------SYASQEPWIFAA-TIRQNILFGLPYLRRRYADVI-- 187
+ GG SYA +F T+ NI +GL R +
Sbjct: 60 TIYQGGRDITRLPPQKRDYGIVFQSYA-----LFPNLTVADNIAYGL-KNRGMGRAEVAE 113
Query: 188 RVCALQDDFDSLPNGDFTVVGERGASLSGGQKARINLARAVYKNADIYLLDDPLSAVDMH 247
RV L D LP + LSGGQ+ R+ LARA+ + + LLD+PLSA+D
Sbjct: 114 RVAELLDLVG-LP----GSERKYPGQLSGGQQQRVALARALATSPGLLLLDEPLSALDAR 168
Query: 248 VGKHL 252
V +HL
Sbjct: 169 VREHL 173
>gnl|CDD|213224 cd03257, ABC_NikE_OppD_transporters, ATP-binding cassette domain of
nickel/oligopeptides specific transporters. The ABC
transporter subfamily specific for the transport of
dipeptides, oligopeptides (OppD), and nickel (NikDE).
The NikABCDE system of E. coli belongs to this family
and is composed of the periplasmic binding protein NikA,
two integral membrane components (NikB and NikC), and
two ATPase (NikD and NikE). The NikABCDE transporter is
synthesized under anaerobic conditions to meet the
increased demand for nickel resulting from hydrogenase
synthesis. The molecular mechanism of nickel uptake in
many bacteria and most archaea is not known. Many other
members of this ABC family are also involved in the
uptake of dipeptides and oligopeptides. The oligopeptide
transport system (Opp) is a five-component ABC transport
composed of a membrane-anchored substrate binding
proteins (SRP), OppA, two transmembrane proteins, OppB
and OppC, and two ATP-binding domains, OppD and OppF.
Length = 228
Score = 67.9 bits (167), Expect = 1e-13
Identities = 40/163 (24%), Positives = 70/163 (42%), Gaps = 24/163 (14%)
Query: 107 LNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSLGGT------------- 153
L+ VS + K + ++G G+GK++L IL L+ +SG + G
Sbjct: 21 LDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGSIIFDGKDLLKLSRRLRKIR 80
Query: 154 ---VSYASQEPWIFAA-----TIRQNILFGLPYLRRRYADVIRVCALQDDFDSLPNGDFT 205
+ Q+P ++ TI + I L + R A+ + +
Sbjct: 81 RKEIQMVFQDP--MSSLNPRMTIGEQIAEPLRIHGKLSKKEARKEAVLLLLVGVGLPE-E 137
Query: 206 VVGERGASLSGGQKARINLARAVYKNADIYLLDDPLSAVDMHV 248
V+ LSGGQ+ R+ +ARA+ N + + D+P SA+D+ V
Sbjct: 138 VLNRYPHELSGGQRQRVAIARALALNPKLLIADEPTSALDVSV 180
>gnl|CDD|130344 TIGR01277, thiQ, thiamine ABC transporter, ATP-binding protein.
This model describes the energy-transducing ATPase
subunit ThiQ of the ThiBPQ thiamine (and thiamine
pyrophosphate) ABC transporter in several
Proteobacteria. This protein is found so far only in
Proteobacteria, and is found in complete genomes only if
the ThiB and ThiP subunits are also found [Transport and
binding proteins, Other].
Length = 213
Score = 67.6 bits (165), Expect = 1e-13
Identities = 48/143 (33%), Positives = 69/143 (48%), Gaps = 30/143 (20%)
Query: 122 IIGAIGAGKTSLLHIILNELRISSGKVSLGGT-----------VSYASQEPWIFA-ATIR 169
I+G GAGK++LL++I + +SG + + VS QE +FA T+R
Sbjct: 29 IMGPSGAGKSTLLNLIAGFIEPASGSIKVNDQSHTGLAPYQRPVSMLFQENNLFAHLTVR 88
Query: 170 QNILFGL-PYLR------RRYADVIRVCALQDDFDSLPNGDFTVVGERGASLSGGQKARI 222
QNI GL P L+ + D + + D D LP LSGGQ+ R+
Sbjct: 89 QNIGLGLHPGLKLNAEQQEKVVDAAQQVGIADYLDRLPE-----------QLSGGQRQRV 137
Query: 223 NLARAVYKNADIYLLDDPLSAVD 245
LAR + + I LLD+P SA+D
Sbjct: 138 ALARCLVRPNPILLLDEPFSALD 160
>gnl|CDD|213263 cd03296, ABC_CysA_sulfate_importer, ATP-binding cassette domain of
the sulfate transporter. Part of the ABC transporter
complex cysAWTP involved in sulfate import. Responsible
for energy coupling to the transport system. The complex
is composed of two ATP-binding proteins (cysA), two
transmembrane proteins (cysT and cysW), and a
solute-binding protein (cysP). ABC transporters are a
large family of proteins involved in the transport of a
wide variety of different compounds, like sugars, ions,
peptides, and more complex organic molecules. The
nucleotide binding domain shows the highest similarity
between all members of the family. ABC transporters are
a subset of nucleotide hydrolases that contain a
signature motif, Q-loop, and H-loop/switch region, in
addition to, the Walker A motif/P-loop and Walker B
motif commonly found in a number of ATP- and GTP-binding
and hydrolyzing proteins.
Length = 239
Score = 67.7 bits (166), Expect = 2e-13
Identities = 48/169 (28%), Positives = 74/169 (43%), Gaps = 34/169 (20%)
Query: 107 LNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSLGG-----------TVS 155
L+ VS+ +L ++G G+GKT+LL +I R SG + GG V
Sbjct: 18 LDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDATDVPVQERNVG 77
Query: 156 YASQEPWIFA-ATIRQNILFGLPY-----------LRRRYADVIRVCALQDDFDSLPNGD 203
+ Q +F T+ N+ FGL +R + +++++ L D P
Sbjct: 78 FVFQHYALFRHMTVFDNVAFGLRVKPRSERPPEAEIRAKVHELLKLVQLDWLADRYPA-- 135
Query: 204 FTVVGERGASLSGGQKARINLARAVYKNADIYLLDDPLSAVDMHVGKHL 252
LSGGQ+ R+ LARA+ + LLD+P A+D V K L
Sbjct: 136 ---------QLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKEL 175
>gnl|CDD|226905 COG4525, TauB, ABC-type taurine transport system, ATPase component
[Inorganic ion transport and metabolism].
Length = 259
Score = 67.5 bits (165), Expect = 3e-13
Identities = 42/177 (23%), Positives = 74/177 (41%), Gaps = 34/177 (19%)
Query: 88 HVSLDNVTAQWSLQNADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGK 147
+++ +++ + + L VS+T +L ++G G GKT+LL++I + S G
Sbjct: 3 MLNVSHLSLSYEGKPRSA-LEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPSRGS 61
Query: 148 VSLGG-TVSYASQE-----------PWIFAATIRQNILFGL------PYLRRRYAD-VIR 188
+ L G + E PW+ + N+ FGL RR A ++
Sbjct: 62 IQLNGRRIEGPGAERGVVFQNEALLPWL---NVIDNVAFGLQLRGIEKAQRREIAHQMLA 118
Query: 189 VCALQDDFDSLPNGDFTVVGERGASLSGGQKARINLARAVYKNADIYLLDDPLSAVD 245
+ L+ LSGG + R+ +ARA+ + LLD+P A+D
Sbjct: 119 LVGLEGAEHKYI-----------WQLSGGMRQRVGIARALAVEPQLLLLDEPFGALD 164
>gnl|CDD|213191 cd03224, ABC_TM1139_LivF_branched, ATP-binding cassette domain of
branched-chain amino acid transporter. LivF (TM1139) is
part of the LIV-I bacterial ABC-type two-component
transport system that imports neutral, branched-chain
amino acids. The E. coli branched-chain amino acid
transporter comprises a heterodimer of ABC transporters
(LivF and LivG), a heterodimer of six-helix TM domains
(LivM and LivH), and one of two alternative soluble
periplasmic substrate binding proteins (LivK or LivJ).
ABC transporters are a large family of proteins involved
in the transport of a wide variety of different
compounds, like sugars, ions, peptides, and more complex
organic molecules.
Length = 222
Score = 66.3 bits (163), Expect = 4e-13
Identities = 46/156 (29%), Positives = 69/156 (44%), Gaps = 34/156 (21%)
Query: 107 LNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSLGGT------------- 153
L VS+T ++ ++G GAGKT+LL I+ L SG + G
Sbjct: 16 LFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGLPPHERARA 75
Query: 154 -VSYASQEPWIFAA-TIRQNILFGLPYLRRR---YADVIRVCALQDDFDSLPNGDFTVVG 208
+ Y + IF T+ +N+L G Y RRR A + RV L F +
Sbjct: 76 GIGYVPEGRRIFPELTVEENLLLGA-YARRRAKRKARLERVYEL-----------FPRLK 123
Query: 209 ER----GASLSGGQKARINLARAVYKNADIYLLDDP 240
ER +LSGG++ + +ARA+ + LLD+P
Sbjct: 124 ERRKQLAGTLSGGEQQMLAIARALMSRPKLLLLDEP 159
>gnl|CDD|182716 PRK10771, thiQ, thiamine transporter ATP-binding subunit;
Provisional.
Length = 232
Score = 66.5 bits (163), Expect = 4e-13
Identities = 49/143 (34%), Positives = 70/143 (48%), Gaps = 30/143 (20%)
Query: 122 IIGAIGAGKTSLLHIILNELRISSGKVSLGGT-----------VSYASQEPWIFA-ATIR 169
I+G GAGK++LL++I L +SG ++L G VS QE +F+ T+
Sbjct: 30 ILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQDHTTTPPSRRPVSMLFQENNLFSHLTVA 89
Query: 170 QNILFGL-PYL------RRRYADVIRVCALQDDFDSLPNGDFTVVGERGASLSGGQKARI 222
QNI GL P L R + + R ++D LP LSGGQ+ R+
Sbjct: 90 QNIGLGLNPGLKLNAAQREKLHAIARQMGIEDLLARLP-----------GQLSGGQRQRV 138
Query: 223 NLARAVYKNADIYLLDDPLSAVD 245
LAR + + I LLD+P SA+D
Sbjct: 139 ALARCLVREQPILLLDEPFSALD 161
>gnl|CDD|213267 cd03300, ABC_PotA_N, ATP-binding cassette domain of the polyamine
transporter. PotA is an ABC-type transporter and the
ATPase component of the
spermidine/putrescine-preferential uptake system
consisting of PotA, -B, -C, and -D. PotA has two domains
with the N-terminal domain containing the ATPase
activity and the residues required for homodimerization
with PotA and heterdimerization with PotB. ABC
transporters are a large family of proteins involved in
the transport of a wide variety of different compounds,
like sugars, ions, peptides, and more complex organic
molecules. The nucleotide binding domain shows the
highest similarity between all members of the family.
ABC transporters are a subset of nucleotide hydrolases
that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing proteins.
Length = 232
Score = 66.1 bits (162), Expect = 6e-13
Identities = 51/188 (27%), Positives = 88/188 (46%), Gaps = 43/188 (22%)
Query: 89 VSLDNVTAQWSLQNADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKV 148
+ L+NV+ + + L+ VS+ K + ++G G GKT+LL +I +SG++
Sbjct: 1 IELENVSKFY---GGFVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEI 57
Query: 149 SLGG--------------TV--SYASQEPWIFA-ATIRQNILFGLPY-------LRRRYA 184
L G TV +YA +F T+ +NI FGL ++ R A
Sbjct: 58 LLDGKDITNLPPHKRPVNTVFQNYA-----LFPHLTVFENIAFGLRLKKLPKAEIKERVA 112
Query: 185 DVIRVCALQDDFDSLPNGDFTVVGERGASLSGGQKARINLARAVYKNADIYLLDDPLSAV 244
+ + + L+ + P + LSGGQ+ R+ +ARA+ + LLD+PL A+
Sbjct: 113 EALDLVQLEGYANRKP-----------SQLSGGQQQRVAIARALVNEPKVLLLDEPLGAL 161
Query: 245 DMHVGKHL 252
D+ + K +
Sbjct: 162 DLKLRKDM 169
>gnl|CDD|224050 COG1125, OpuBA, ABC-type proline/glycine betaine transport systems,
ATPase components [Amino acid transport and metabolism].
Length = 309
Score = 66.6 bits (163), Expect = 8e-13
Identities = 45/176 (25%), Positives = 84/176 (47%), Gaps = 29/176 (16%)
Query: 89 VSLDNVTAQWSLQNADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKV 148
+ +NV+ ++ + A ++ V++T + + +IG G+GKT+ L +I + +SG++
Sbjct: 2 IEFENVSKRYGNKKA---VDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEI 58
Query: 149 SLGGT-------------VSYASQEPWIFA-ATIRQNILFGLPYL----RRRYADVIRVC 190
+ G + Y Q+ +F T+ +NI +P L + R R
Sbjct: 59 LIDGEDISDLDPVELRRKIGYVIQQIGLFPHLTVAENIAT-VPKLLGWDKERIKK--RAD 115
Query: 191 ALQDDFDSLPNGDFTVVGER-GASLSGGQKARINLARAVYKNADIYLLDDPLSAVD 245
L D L ++ +R LSGGQ+ R+ +ARA+ + I L+D+P A+D
Sbjct: 116 ELLDLVG-LDPSEY---ADRYPHELSGGQQQRVGVARALAADPPILLMDEPFGALD 167
>gnl|CDD|213187 cd03220, ABC_KpsT_Wzt, ATP-binding cassette component of
polysaccharide transport system. The KpsT/Wzt ABC
transporter subfamily is involved in extracellular
polysaccharide export. Among the variety of
membrane-linked or extracellular polysaccharides
excreted by bacteria, only capsular polysaccharides,
lipopolysaccharides, and teichoic acids have been shown
to be exported by ABC transporters. A typical system is
made of a conserved integral membrane and an ABC. In
addition to these proteins, capsular polysaccharide
exporter systems require two 'accessory' proteins to
perform their function: a periplasmic (E.coli) or a
lipid-anchored outer membrane protein called OMA
(Neisseria meningitidis and Haemophilus influenza) and a
cytoplasmic membrane protein MPA2.
Length = 224
Score = 65.2 bits (160), Expect = 9e-13
Identities = 43/164 (26%), Positives = 64/164 (39%), Gaps = 41/164 (25%)
Query: 98 WSLQNADLTLNA-VSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSLGGTVSY 156
W+L++ + I +IG GAGK++LL ++ SG V++ G VS
Sbjct: 36 WALKDVSFEVPRGERI--------GLIGRNGAGKSTLLRLLAGIYPPDSGTVTVRGRVS- 86
Query: 157 ASQEPWIFA--------ATIRQNILF-----GL--PYLRRRYADVIRVCALQDDFDSLPN 201
+ T R+NI GL + + ++I L D D LP
Sbjct: 87 -----SLLGLGGGFNPELTGRENIYLNGRLLGLSRKEIDEKIDEIIEFSELGDFID-LP- 139
Query: 202 GDFTVVGERGASLSGGQKARINLARAVYKNADIYLLDDPLSAVD 245
V S G KAR+ A A DI L+D+ L+ D
Sbjct: 140 -----VKT----YSSGMKARLAFAIATALEPDILLIDEVLAVGD 174
>gnl|CDD|224049 COG1124, DppF, ABC-type dipeptide/oligopeptide/nickel transport
system, ATPase component [Amino acid transport and
metabolism / Inorganic ion transport and metabolism].
Length = 252
Score = 65.7 bits (161), Expect = 1e-12
Identities = 46/187 (24%), Positives = 80/187 (42%), Gaps = 41/187 (21%)
Query: 89 VSLDNVTAQWSLQNADLT-LNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGK 147
+S+ N++ + LN VS+ + + I+G G+GK++L ++ + SSG
Sbjct: 4 LSVRNLSIVYGGGKFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSSGS 63
Query: 148 VSLGGTV--------------------SYASQEPWIFAATIRQNIL-----FGLPYLRRR 182
+ L G Y+S P T+ + + GL ++R
Sbjct: 64 ILLDGKPLAPKKRAKAFYRPVQMVFQDPYSSLNPRR---TVGRILSEPLRPHGLSKSQQR 120
Query: 183 YADVIRVCALQDDF-DSLPNGDFTVVGERGASLSGGQKARINLARAVYKNADIYLLDDPL 241
A+++ L F D P+ LSGGQ+ RI +ARA+ + +LD+P
Sbjct: 121 IAELLDQVGLPPSFLDRRPH-----------ELSGGQRQRIAIARALIPEPKLLILDEPT 169
Query: 242 SAVDMHV 248
SA+D+ V
Sbjct: 170 SALDVSV 176
>gnl|CDD|234199 TIGR03410, urea_trans_UrtE, urea ABC transporter, ATP-binding
protein UrtE. Members of this protein family are ABC
transporter ATP-binding subunits associated with urea
transport and metabolism. This protein is found in a
conserved five-gene transport operon typically found
adjacent to urease genes. It was shown in Cyanobacteria
that disruption leads to the loss of high-affinity urea
transport activity [Transport and binding proteins,
Amino acids, peptides and amines].
Length = 230
Score = 65.2 bits (160), Expect = 1e-12
Identities = 46/150 (30%), Positives = 72/150 (48%), Gaps = 23/150 (15%)
Query: 107 LNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSLGGT------------- 153
L VS+ ++ C++G G GKT+LL ++ L + SG + L G
Sbjct: 16 LRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGEDITKLPPHERARA 75
Query: 154 -VSYASQEPWIFAA-TIRQNILFGLPYLRRRYADVI-RVCALQDDFDSLPNGDFTVVGER 210
++Y Q IF T+ +N+L GL L RR + + L F L ++G R
Sbjct: 76 GIAYVPQGREIFPRLTVEENLLTGLAALPRRSRKIPDEIYEL---FPVL----KEMLGRR 128
Query: 211 GASLSGGQKARINLARAVYKNADIYLLDDP 240
G LSGGQ+ ++ +ARA+ + LLD+P
Sbjct: 129 GGDLSGGQQQQLAIARALVTRPKLLLLDEP 158
>gnl|CDD|132302 TIGR03258, PhnT, 2-aminoethylphosphonate ABC transport system,
ATP-binding component PhnT. This ATP-binding component
of an ABC transport system is found in Salmonella and
Burkholderia lineages in the vicinity of enzymes for the
breakdown of 2-aminoethylphosphonate.
Length = 362
Score = 66.6 bits (162), Expect = 1e-12
Identities = 50/192 (26%), Positives = 92/192 (47%), Gaps = 35/192 (18%)
Query: 85 GKGHVSLDNVTAQWSLQNADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRIS 144
G + +D++ + A+ L+ +S+ + +L +IG G GKT+LL I ++ +
Sbjct: 2 ACGGIRIDHLRVAY---GANTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAA 58
Query: 145 --SGKVSLGGT-VSYAS----------QEPWIFA-ATIRQNILFGLPYLR-------RRY 183
+G++++ +++A Q +F + N+ FGL + R
Sbjct: 59 GLTGRIAIADRDLTHAPPHKRGLALLFQNYALFPHLKVEDNVAFGLRAQKMPKADIAERV 118
Query: 184 ADVIRVCALQDDFDSLPNGDFTVVGERGASLSGGQKARINLARAVYKNADIYLLDDPLSA 243
AD +++ L D LP A LSGG + RI +ARA+ D+ LLD+PLSA
Sbjct: 119 ADALKLVGLGDAAAHLP-----------AQLSGGMQQRIAIARAIAIEPDVLLLDEPLSA 167
Query: 244 VDMHVGKHLFED 255
+D ++ ++ E+
Sbjct: 168 LDANIRANMREE 179
>gnl|CDD|162242 TIGR01187, potA, spermidine/putrescine ABC transporter ATP-binding
subunit. This model describes spermidine/putrescine ABC
transporter, ATP binding subunit in bacteria and its
equivalents in archaea. This transport system belong to
the larger ATP-Binding Cassette (ABC) transporter
superfamily. The characteristic feature of these
transporter is the obligatory coupling of ATP hydrolysis
to substrate translocation. The minimal configuration of
bacterial ABC transport system: an ATPase or ATP binding
subunit; An integral membrane protein; a hydrophilic
polypetpide, which likely functions as substrate binding
protein. Polyamines like spermidine and putrescine play
vital role in cell proliferation, differentiation, and
ion homeostasis. The concentration of polyamines within
the cell are regulated by biosynthesis, degradation and
transport (uptake and efflux included) [Transport and
binding proteins, Amino acids, peptides and amines].
Length = 325
Score = 66.0 bits (161), Expect = 2e-12
Identities = 42/143 (29%), Positives = 68/143 (47%), Gaps = 30/143 (20%)
Query: 122 IIGAIGAGKTSLLHIILNELRISSGKVSLGGT-----------VSYASQEPWIFA-ATIR 169
++G G GKT+LL ++ + SG + L G ++ Q +F T+
Sbjct: 1 LLGPSGCGKTTLLRLLAGFEQPDSGSIMLDGEDVTNVPPHLRHINMVFQSYALFPHMTVE 60
Query: 170 QNILFGLPY-------LRRRYADVIRVCALQDDFDSLPNGDFTVVGERGASLSGGQKARI 222
+N+ FGL ++ R + +R+ L++ D P+ LSGGQ+ R+
Sbjct: 61 ENVAFGLKMRKVPRAEIKPRVLEALRLVQLEEFADRKPH-----------QLSGGQQQRV 109
Query: 223 NLARAVYKNADIYLLDDPLSAVD 245
LARA+ I LLD+PLSA+D
Sbjct: 110 ALARALVFKPKILLLDEPLSALD 132
>gnl|CDD|223487 COG0410, LivF, ABC-type branched-chain amino acid transport
systems, ATPase component [Amino acid transport and
metabolism].
Length = 237
Score = 64.4 bits (158), Expect = 3e-12
Identities = 42/153 (27%), Positives = 72/153 (47%), Gaps = 27/153 (17%)
Query: 107 LNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSLGGT------------- 153
L VS+ + ++ ++G GAGKT+LL I+ +R SG++ G
Sbjct: 19 LRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFDGEDITGLPPHERARL 78
Query: 154 -VSYASQEPWIFAA-TIRQNILFGLPYLRRRYADVIRVCALQDDFDSLPNGDFTVVGER- 210
++Y + IF T+ +N+L G Y RR R L++ ++ P + ER
Sbjct: 79 GIAYVPEGRRIFPRLTVEENLLLGA-YARRDKEAQERD--LEEVYELFPR-----LKERR 130
Query: 211 ---GASLSGGQKARINLARAVYKNADIYLLDDP 240
+LSGG++ + +ARA+ + LLD+P
Sbjct: 131 NQRAGTLSGGEQQMLAIARALMSRPKLLLLDEP 163
>gnl|CDD|213230 cd03263, ABC_subfamily_A, ATP-binding cassette domain of the lipid
transporters, subfamily A. The ABCA subfamily mediates
the transport of a variety of lipid compounds. Mutations
of members of ABCA subfamily are associated with human
genetic diseases, such as, familial high-density
lipoprotein (HDL) deficiency, neonatal surfactant
deficiency, degenerative retinopathies, and congenital
keratinization disorders. The ABCA1 protein is involved
in disorders of cholesterol transport and high-density
lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein
transports vitamin A derivatives in the outer segments
of photoreceptor cells, and therefore, performs a
crucial step in the visual cycle. The ABCA genes are not
present in yeast. However, evolutionary studies of ABCA
genes indicate that they arose as transporters that
subsequently duplicated and that certain sets of ABCA
genes were lost in different eukaryotic lineages.
Length = 220
Score = 63.7 bits (156), Expect = 3e-12
Identities = 42/174 (24%), Positives = 74/174 (42%), Gaps = 36/174 (20%)
Query: 107 LNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSLGGT------------V 154
++ +S+ ++ ++G GAGKT+ L ++ ELR +SG + G +
Sbjct: 18 VDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSIRTDRKAARQSL 77
Query: 155 SYASQE---PWIFAATIRQNILF-----GLP--YLRRRYADVIRVCALQDDFDSLPNGDF 204
Y Q T+R+++ F GLP ++ ++RV L D +
Sbjct: 78 GYCPQFDALFDEL--TVREHLRFYARLKGLPKSEIKEEVELLLRVLGLTDKANKRAR--- 132
Query: 205 TVVGERGASLSGGQKARINLARAVYKNADIYLLDDPLSAVDMHVGKHLFEDCIS 258
+LSGG K +++LA A+ + LLD+P S +D + D I
Sbjct: 133 --------TLSGGMKRKLSLAIALIGGPSVLLLDEPTSGLD-PASRRAIWDLIL 177
>gnl|CDD|213186 cd03219, ABC_Mj1267_LivG_branched, ATP-binding cassette component
of branched chain amino acids transport system. The
Mj1267/LivG ABC transporter subfamily is involved in the
transport of the hydrophobic amino acids leucine,
isoleucine and valine. MJ1267 is a branched-chain amino
acid transporter with 29% similarity to both the LivF
and LivG components of the E. coli branched-chain amino
acid transporter. MJ1267 contains an insertion from
residues 114 to 123 characteristic of LivG
(Leucine-Isoleucine-Valine) homologs. The branched-chain
amino acid transporter from E. coli comprises a
heterodimer of ABCs (LivF and LivG), a heterodimer of
six-helix TM domains (LivM and LivH), and one of two
alternative soluble periplasmic substrate binding
proteins (LivK or LivJ).
Length = 236
Score = 64.0 bits (157), Expect = 4e-12
Identities = 41/168 (24%), Positives = 68/168 (40%), Gaps = 43/168 (25%)
Query: 107 LNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSLGGT------------- 153
L+ VS + +P ++ +IG GAGKT+L ++I LR +SG V G
Sbjct: 16 LDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLPPHEIARL 75
Query: 154 -VSYASQEPWIFAA-TIRQNILFGLPY-----------------LRRRYADVIRVCALQD 194
+ Q P +F T+ +N++ R R +++ L D
Sbjct: 76 GIGRTFQIPRLFPELTVLENVMVAAQARTGSGLLLARARREEREARERAEELLERVGLAD 135
Query: 195 DFDSLPNGDFTVVGERGASLSGGQKARINLARAVYKNADIYLLDDPLS 242
D LS GQ+ R+ +ARA+ + + LLD+P +
Sbjct: 136 LADRPA-----------GELSYGQQRRLEIARALATDPKLLLLDEPAA 172
>gnl|CDD|224051 COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase
component [Amino acid transport and metabolism].
Length = 240
Score = 63.7 bits (156), Expect = 5e-12
Identities = 41/163 (25%), Positives = 72/163 (44%), Gaps = 36/163 (22%)
Query: 107 LNAVSITFKPKQLACIIGAIGAGKTSLLHIILNEL-RISSGKVSLGGTVSYAS------- 158
L +S++ + ++ IIG G+GK++LL + N L SG +++ G
Sbjct: 18 LKGISLSVEKGEVVVIIGPSGSGKSTLLRCL-NGLEEPDSGSITVDGEDVGDKKDILKLR 76
Query: 159 -------QEPWIFA-ATIRQNILFGLPYLRRRYADVIRVCALQ--------DDFDSLPNG 202
Q+ +F T+ +N+ +++ R AL+ D D+ P
Sbjct: 77 RKVGMVFQQFNLFPHLTVLENVTLAPVKVKKLSKAEAREKALELLEKVGLADKADAYP-- 134
Query: 203 DFTVVGERGASLSGGQKARINLARAVYKNADIYLLDDPLSAVD 245
A LSGGQ+ R+ +ARA+ + + L D+P SA+D
Sbjct: 135 ---------AQLSGGQQQRVAIARALAMDPKVMLFDEPTSALD 168
>gnl|CDD|226628 COG4148, ModC, ABC-type molybdate transport system, ATPase
component [Inorganic ion transport and metabolism].
Length = 352
Score = 64.3 bits (157), Expect = 6e-12
Identities = 43/163 (26%), Positives = 75/163 (46%), Gaps = 37/163 (22%)
Query: 103 ADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSLGGTV-------- 154
A+ TL A IT + G G+GKTSL+++I R G++ L G V
Sbjct: 17 ANFTLPARGIT-------ALFGPSGSGKTSLINMIAGLTRPDEGRIELNGRVLVDAEKGI 69
Query: 155 ---------SYASQEPWIFA-ATIRQNILFGLPYLRRRYAD-VIRVCALQDDFDSLPNGD 203
Y Q+ +F T+R N+ +G+ R D ++ + ++ D P
Sbjct: 70 FLPPEKRRIGYVFQDARLFPHYTVRGNLRYGMWKSMRAQFDQLVALLGIEHLLDRYPG-- 127
Query: 204 FTVVGERGASLSGGQKARINLARAVYKNADIYLLDDPLSAVDM 246
+LSGG+K R+ + RA+ ++ L+D+PL+++D+
Sbjct: 128 ---------TLSGGEKQRVAIGRALLTAPELLLMDEPLASLDL 161
>gnl|CDD|213223 cd03256, ABC_PhnC_transporter, ATP-binding cassette domain of the
binding protein-dependent phosphonate transport system.
Phosphonates are a class of organophosphorus compounds
characterized by a chemically stable
carbon-to-phosphorus (C-P) bond. Phosphonates are
widespread among naturally occurring compounds in all
kingdoms of wildlife, but only prokaryotic
microorganisms are able to cleave this bond. Certain
bacteria such as E. coli can use alkylphosphonates as a
phosphorus source. ABC transporters are a subset of
nucleotide hydrolases that contain a signature motif,
Q-loop, and H-loop/switch region, in addition to, the
Walker A motif/P-loop and Walker B motif commonly found
in a number of ATP- and GTP-binding and hydrolyzing
proteins.
Length = 241
Score = 63.4 bits (155), Expect = 6e-12
Identities = 44/181 (24%), Positives = 78/181 (43%), Gaps = 33/181 (18%)
Query: 91 LDNVTAQWSLQNADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSL 150
++N++ + N L VS++ P + +IG GAGK++LL + + +SG V +
Sbjct: 3 VENLSKTYP--NGKKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLI 60
Query: 151 GGTV----------SYASQEPWIFAA-------TIRQNILFG-LPY------LRRRY--A 184
GT Q IF ++ +N+L G L L +
Sbjct: 61 DGTDINKLKGKALRQLRRQIGMIFQQFNLIERLSVLENVLSGRLGRRSTWRSLFGLFPKE 120
Query: 185 DVIRVCALQDDFDSLPNGDFTVVGERGASLSGGQKARINLARAVYKNADIYLLDDPLSAV 244
+ R A + L +R LSGGQ+ R+ +ARA+ + + L D+P++++
Sbjct: 121 EKQRALAALERVGLL-----DKAYQRADQLSGGQQQRVAIARALMQQPKLILADEPVASL 175
Query: 245 D 245
D
Sbjct: 176 D 176
>gnl|CDD|183056 PRK11248, tauB, taurine transporter ATP-binding subunit;
Provisional.
Length = 255
Score = 63.2 bits (154), Expect = 9e-12
Identities = 45/168 (26%), Positives = 78/168 (46%), Gaps = 24/168 (14%)
Query: 91 LDNVTAQWSLQNADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSL 150
+ ++ A + + A L +++T + +L ++G G GKT+LL++I + G ++L
Sbjct: 4 ISHLYADYGGKPA---LEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITL 60
Query: 151 GGT-VSYASQE-----------PWIFAATIRQNILFGLPYLRRRYADVIRVCALQDDFDS 198
G V E PW ++ N+ FGL + A V ++ L+
Sbjct: 61 DGKPVEGPGAERGVVFQNEGLLPW---RNVQDNVAFGL-----QLAGVEKMQRLEIAHQM 112
Query: 199 LPNGDFTVVGERGA-SLSGGQKARINLARAVYKNADIYLLDDPLSAVD 245
L +R LSGGQ+ R+ +ARA+ N + LLD+P A+D
Sbjct: 113 LKKVGLEGAEKRYIWQLSGGQRQRVGIARALAANPQLLLLDEPFGALD 160
>gnl|CDD|226164 COG3638, COG3638, ABC-type phosphate/phosphonate transport system,
ATPase component [Inorganic ion transport and
metabolism].
Length = 258
Score = 63.0 bits (154), Expect = 9e-12
Identities = 40/167 (23%), Positives = 73/167 (43%), Gaps = 35/167 (20%)
Query: 107 LNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSLGGT------------- 153
L V++ ++ IIG GAGK++LL + + +SG++ G
Sbjct: 20 LKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEILFNGVQITKLKGKELRKL 79
Query: 154 ---VSYASQEPWIFA-ATIRQNILFGLPYLRRRYADVIRVC-----------ALQDDFDS 198
+ Q+ + ++ +N+L G R Y R AL D +
Sbjct: 80 RRDIGMIFQQFNLVPRLSVLENVLLG----RLGYTSTWRSLFGLFSKEDKAQAL-DALER 134
Query: 199 LPNGDFTVVGERGASLSGGQKARINLARAVYKNADIYLLDDPLSAVD 245
+ D +R ++LSGGQ+ R+ +ARA+ + I L D+P++++D
Sbjct: 135 VGILDK--AYQRASTLSGGQQQRVAIARALVQQPKIILADEPVASLD 179
>gnl|CDD|224058 COG1135, AbcC, ABC-type metal ion transport system, ATPase
component [Inorganic ion transport and metabolism].
Length = 339
Score = 63.4 bits (155), Expect = 1e-11
Identities = 52/185 (28%), Positives = 79/185 (42%), Gaps = 41/185 (22%)
Query: 89 VSLDNVTAQWS--LQNADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNEL-RISS 145
+ L+NV+ + L+ VS+ ++ IIG GAGK++LL +I N L R +S
Sbjct: 2 IELENVSKTFGQTGTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLI-NLLERPTS 60
Query: 146 GKVSLGGT----------------VSYASQEPWIFAA-TIRQNILF-----GLPYLRRRY 183
G V + G + Q + ++ T+ +N+ F G+P
Sbjct: 61 GSVFVDGQDLTALSEAELRQLRQKIGMIFQHFNLLSSRTVFENVAFPLELAGVPK-AEIK 119
Query: 184 ADVIRVCA---LQDDFDSLPNGDFTVVGERGASLSGGQKARINLARAVYKNADIYLLDDP 240
V + L D D P A LSGGQK R+ +ARA+ N I L D+
Sbjct: 120 QRVAELLELVGLSDKADRYP-----------AQLSGGQKQRVAIARALANNPKILLCDEA 168
Query: 241 LSAVD 245
SA+D
Sbjct: 169 TSALD 173
>gnl|CDD|213225 cd03258, ABC_MetN_methionine_transporter, ATP-binding cassette
domain of methionine transporter. MetN (also known as
YusC) is an ABC-type transporter encoded by metN of the
metNPQ operon in Bacillus subtilis that is involved in
methionine transport. Other members of this system
include the MetP permease and the MetQ substrate binding
protein. ABC transporters are a subset of nucleotide
hydrolases that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing proteins.
Length = 233
Score = 62.2 bits (152), Expect = 1e-11
Identities = 50/183 (27%), Positives = 83/183 (45%), Gaps = 38/183 (20%)
Query: 89 VSLDNVTAQWSLQNADLT-LNAVSITFKPKQLACIIGAIGAGKTSLLHIILNEL-RISSG 146
+ L NV+ + +T L VS++ ++ IIG GAGK++L+ I N L R +SG
Sbjct: 2 IELKNVSKVFGDTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCI-NGLERPTSG 60
Query: 147 KVSLGGT----------------VSYASQEPWIFAA-TIRQNILFGL-------PYLRRR 182
V + GT + Q + ++ T+ +N+ L + R
Sbjct: 61 SVLVDGTDLTLLSGKELRKARRRIGMIFQHFNLLSSRTVFENVALPLEIAGVPKAEIEER 120
Query: 183 YADVIRVCALQDDFDSLPNGDFTVVGERGASLSGGQKARINLARAVYKNADIYLLDDPLS 242
+++ + L+D D+ P A LSGGQK R+ +ARA+ N + L D+ S
Sbjct: 121 VLELLELVGLEDKADAYP-----------AQLSGGQKQRVGIARALANNPKVLLCDEATS 169
Query: 243 AVD 245
A+D
Sbjct: 170 ALD 172
>gnl|CDD|188099 TIGR00972, 3a0107s01c2, phosphate ABC transporter, ATP-binding
protein. This model represents the ATP-binding protein
of a family of ABC transporters for inorganic phosphate.
In the model species Escherichia coli, a constitutive
transporter for inorganic phosphate, with low affinity,
is also present. The high affinity transporter that
includes this polypeptide is induced when extracellular
phosphate concentrations are low. The proteins most
similar to the members of this family but not included
appear to be amino acid transporters [Transport and
binding proteins, Anions].
Length = 247
Score = 62.3 bits (152), Expect = 1e-11
Identities = 47/169 (27%), Positives = 73/169 (43%), Gaps = 39/169 (23%)
Query: 107 LNAVSITFKPKQLACIIGAIGAGKTSLLHII--LNEL----RISSGKVSLGGTVSYAS-- 158
L +++ Q+ +IG G GK++LL + +N+L RI GKV G Y
Sbjct: 17 LKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIE-GKVLFDGQDIYDKKI 75
Query: 159 -------------QEPWIFAATIRQNILFGL--------PYLRRRYADVIRVCALQDDF- 196
Q+P F +I NI +G L + ++ AL D+
Sbjct: 76 DVVELRRRVGMVFQKPNPFPMSIYDNIAYGPRLHGIKDKKELDEIVEESLKKAALWDEVK 135
Query: 197 DSLPNGDFTVVGERGASLSGGQKARINLARAVYKNADIYLLDDPLSAVD 245
D L + LSGGQ+ R+ +ARA+ ++ LLD+P SA+D
Sbjct: 136 DRLHDSAL--------GLSGGQQQRLCIARALAVEPEVLLLDEPTSALD 176
>gnl|CDD|213201 cd03234, ABCG_White, White pigment protein homolog of ABCG
transporter subfamily. The White subfamily represents
ABC transporters homologous to the Drosophila white
gene, which acts as a dimeric importer for eye pigment
precursors. The eye pigmentation of Drosophila is
developed from the synthesis and deposition in the cells
of red pigments, which are synthesized from guanine, and
brown pigments, which are synthesized from tryptophan.
The pigment precursors are encoded by the white, brown,
and scarlet genes, respectively. Evidence from genetic
and biochemical studies suggest that the White and Brown
proteins function as heterodimers to import guanine,
while the White and Scarlet proteins function to import
tryptophan. However, a recent study also suggests that
White may be involved in the transport of a metabolite,
such as 3-hydroxykynurenine, across intracellular
membranes. Mammalian ABC transporters belonging to the
White subfamily (ABCG1, ABCG5, and ABCG8) have been
shown to be involved in the regulation of
lipid-trafficking mechanisms in macrophages,
hepatocytes, and intestinal mucosa cells. ABCG1 (ABC8),
the human homolog of the Drosophila white gene is
induced in monocyte-derived macrophages during
cholesterol influx mediated by acetylated low-density
lipoprotein. It is possible that human ABCG1 forms
heterodimers with several heterologous partners.
Length = 226
Score = 61.9 bits (151), Expect = 1e-11
Identities = 42/181 (23%), Positives = 80/181 (44%), Gaps = 17/181 (9%)
Query: 88 HVSLDNVTAQWSLQNAD-LTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELR---I 143
+ +V + N LN VS+ + Q+ I+G+ G+GKT+LL I +
Sbjct: 3 VLPWWDVGLKAKNWNKYARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGT 62
Query: 144 SSGKVSLGG----------TVSYASQ-EPWIFAATIRQNILFGLPY-LRRRYADVIRVCA 191
+SG++ G V+Y Q + + T+R+ + + L R+ +D IR
Sbjct: 63 TSGQILFNGQPRKPDQFQKCVAYVRQDDILLPGLTVRETLTYTAILRLPRKSSDAIRK-K 121
Query: 192 LQDDFDSLPNGDFTVVGERGASLSGGQKARINLARAVYKNADIYLLDDPLSAVDMHVGKH 251
+D + G +SGG++ R+++A + + + +LD+P S +D +
Sbjct: 122 RVEDVLLRDLALTRIGGNLVKGISGGERRRVSIAVQLLWDPKVLILDEPTSGLDSFTALN 181
Query: 252 L 252
L
Sbjct: 182 L 182
>gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport
systems, contain duplicated ATPase [General function
prediction only].
Length = 539
Score = 63.4 bits (155), Expect = 2e-11
Identities = 36/166 (21%), Positives = 65/166 (39%), Gaps = 38/166 (22%)
Query: 107 LNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSLGGTVSYASQEPW---- 162
++ VS + + ++G G+GK++L I+ L SSG + G +
Sbjct: 307 VDDVSFDLREGETLGLVGESGSGKSTLARILAGLLPPSSGSIIFDGQDLDLTGGELRRLR 366
Query: 163 -----IF---------AATIRQNI--------LFGLPYLRRRYADVI-RVCALQDDFDSL 199
+F T+ + R R A+++ V + D
Sbjct: 367 RRIQMVFQDPYSSLNPRMTVGDILAEPLRIHGGGSGAERRARVAELLELVGLPPEFLDRY 426
Query: 200 PNGDFTVVGERGASLSGGQKARINLARAVYKNADIYLLDDPLSAVD 245
P+ LSGGQ+ R+ +ARA+ + +LD+P+SA+D
Sbjct: 427 PH-----------ELSGGQRQRVAIARALALEPKLLILDEPVSALD 461
Score = 50.7 bits (122), Expect = 3e-07
Identities = 35/178 (19%), Positives = 66/178 (37%), Gaps = 55/178 (30%)
Query: 107 LNAVSITFKPKQLACIIGAIGAGKTSLLHIILN----ELRISSGKVSLGGT--------- 153
+ VS +P ++ I+G G+GK++L ++ RI+SG+V L G
Sbjct: 25 VRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLGLSERE 84
Query: 154 --------VSYASQEPWIFAA-----TIRQNILFGLPYLRR------RYADVIRVCALQ- 193
++ Q+P + TI + + L + L+
Sbjct: 85 MRKLRGKRIAMIFQDP--MTSLNPVMTIG-DQIREALRLHGKGSRAEARKRAVE--LLEQ 139
Query: 194 ------DDFDSLPNGDFTVVGERGASLSGGQKARINLARAVYKNADIYLLDDPLSAVD 245
+ D P+ LSGG + R+ +A A+ + + D+P +A+D
Sbjct: 140 VGLPDPERRDRYPH-----------QLSGGMRQRVMIAMALALKPKLLIADEPTTALD 186
>gnl|CDD|226620 COG4136, COG4136, ABC-type uncharacterized transport system, ATPase
component [General function prediction only].
Length = 213
Score = 61.4 bits (149), Expect = 2e-11
Identities = 47/180 (26%), Positives = 76/180 (42%), Gaps = 35/180 (19%)
Query: 87 GHVSLDNVTAQWSLQNADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRIS-- 144
G + L NV+ + L V+ T ++ ++G G GK++LL ++ L
Sbjct: 1 GMLCLKNVSLR---LPGSCLLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFS 57
Query: 145 -SGKVSLGGT-----------VSYASQEPWIFAA-TIRQNILFGLP-----YLRRRYAD- 185
+G++ L + Q+ +F ++ QN+LF LP RR A+
Sbjct: 58 CTGELWLNEQRLDMLPAAQRQIGILFQDALLFPHLSVGQNLLFALPATLKGNARRNAANA 117
Query: 186 VIRVCALQDDFDSLPNGDFTVVGERGASLSGGQKARINLARAVYKNADIYLLDDPLSAVD 245
+ L F P A+LSGGQ+AR+ L RA+ LLD+P S +D
Sbjct: 118 ALERSGLDGAFHQDP-----------ATLSGGQRARVALLRALLAQPKALLLDEPFSRLD 166
>gnl|CDD|213266 cd03299, ABC_ModC_like, ATP-binding cassette domain similar to the
molybdate transporter. Archaeal protein closely related
to ModC. ModC is an ABC-type transporter and the ATPase
component of a molybdate transport system that also
includes the periplasmic binding protein ModA and the
membrane protein ModB. ABC transporters are a large
family of proteins involved in the transport of a wide
variety of different compounds, like sugars, ions,
peptides, and more complex organic molecules. The
nucleotide binding domain shows the highest similarity
between all members of the family. ABC transporters are
a subset of nucleotide hydrolases that contain a
signature motif, Q-loop, and H-loop/switch region, in
addition to, the Walker A motif/P-loop and Walker B
motif commonly found in a number of ATP- and GTP-binding
and hydrolyzing proteins.
Length = 235
Score = 61.6 bits (150), Expect = 3e-11
Identities = 41/143 (28%), Positives = 67/143 (46%), Gaps = 30/143 (20%)
Query: 122 IIGAIGAGKTSLLHIILNELRISSGKVSLGGT-----------VSYASQEPWIFA-ATIR 169
I+G G+GK+ LL I ++ SGK+ L G +SY Q +F T+
Sbjct: 30 ILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDITNLPPEKRDISYVPQNYALFPHMTVY 89
Query: 170 QNILFGL-------PYLRRRYADVIRVCALQDDFDSLPNGDFTVVGERGASLSGGQKARI 222
+NI +GL + R+ ++ + + + P +LSGG++ R+
Sbjct: 90 KNIAYGLKKRKVDKKEIERKVLEIAEMLGIDHLLNRKP-----------ETLSGGEQQRV 138
Query: 223 NLARAVYKNADIYLLDDPLSAVD 245
+ARA+ N I LLD+P SA+D
Sbjct: 139 AIARALVVNPKILLLDEPFSALD 161
>gnl|CDD|130234 TIGR01166, cbiO, cobalt transport protein ATP-binding subunit.
This model describes the ATP binding subunit of the
multisubunit cobalt transporter in bacteria and its
equivalents in archaea. The model is restricted to ATP
subunit that is a part of the cobalt transporter, which
belongs to the ABC transporter superfamily (ATP Binding
Cassette). The model excludes ATP binding subunit that
are associated with other transporters belonging to ABC
transporter superfamily. This superfamily includes two
groups, one which catalyze the uptake of small
molecules, including ions from the external milieu and
the other group which is engaged in the efflux of small
molecular weight compounds and ions from within the
cell. Energy derived from the hydrolysis of ATP drive
the both the process of uptake and efflux [Transport and
binding proteins, Cations and iron carrying compounds].
Length = 190
Score = 60.5 bits (147), Expect = 3e-11
Identities = 42/163 (25%), Positives = 69/163 (42%), Gaps = 35/163 (21%)
Query: 107 LNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSLGGT------------- 153
L ++ + ++ ++GA GAGK++LL + LR SG V + G
Sbjct: 8 LKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGEPLDYSRKGLLERR 67
Query: 154 --VSYASQEP--WIFAATIRQNILFGLPYL-------RRRYADVIRVCALQDDFDSLPNG 202
V Q+P +FAA + Q++ FG L RR + + + +
Sbjct: 68 QRVGLVFQDPDDQLFAADVDQDVAFGPLNLGLSEAEVERRVREALTAVGASGLRERPTH- 126
Query: 203 DFTVVGERGASLSGGQKARINLARAVYKNADIYLLDDPLSAVD 245
LSGG+K R+ +A AV D+ LLD+P + +D
Sbjct: 127 ----------CLSGGEKKRVAIAGAVAMRPDVLLLDEPTAGLD 159
>gnl|CDD|213269 cd03369, ABCC_NFT1, ATP-binding cassette domain 2 of NFT1,
subfamily C. Domain 2 of NFT1 (New full-length MRP-type
transporter 1). NFT1 belongs to the MRP (multidrug
resistance-associated protein) family of ABC
transporters. Some of the MRP members have five
additional transmembrane segments in their N-terminus,
but the function of these additional membrane-spanning
domains is not clear. The MRP was found in the
multidrug-resisting lung cancer cell in which
p-glycoprotein was not overexpressed. MRP exports
glutathione by drug stimulation, as well as, certain
substrates in conjugated forms with anions such as
glutathione, glucuronate, and sulfate.
Length = 207
Score = 60.9 bits (148), Expect = 3e-11
Identities = 46/176 (26%), Positives = 82/176 (46%), Gaps = 36/176 (20%)
Query: 87 GHVSLDNVTAQWSLQNADL--TLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRIS 144
G + ++N++ +++ DL L VS K + I+G GAGK++L+ + L
Sbjct: 5 GEIEVENLSVRYA---PDLPPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAE 61
Query: 145 SGKVSLGG-------------TVSYASQEPWIFAATIRQNILFGLPYLRRRYADVIRVCA 191
GK+ + G +++ Q+P +F+ TIR N+ P+ Y+D A
Sbjct: 62 EGKIEIDGIDISTIPLEDLRSSLTIIPQDPTLFSGTIRSNLD---PF--DEYSDEEIYGA 116
Query: 192 LQDDFDSLPNGDFTVVGERGASLSGGQKARINLARAVYKNADIYLLDDPLSAVDMH 247
L+ V E G +LS GQ+ + LARA+ K + +LD+ +++D
Sbjct: 117 LR-------------VSEGGLNLSQGQRQLLCLARALLKRPRVLVLDEATASIDYA 159
>gnl|CDD|237421 PRK13539, PRK13539, cytochrome c biogenesis protein CcmA;
Provisional.
Length = 207
Score = 60.7 bits (148), Expect = 4e-11
Identities = 46/180 (25%), Positives = 72/180 (40%), Gaps = 32/180 (17%)
Query: 102 NADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSLGGTVSYASQEP 161
+ + +S T + + G G+GKT+LL +I L ++G + L G +P
Sbjct: 13 GGRVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKLDG---GDIDDP 69
Query: 162 WIFAA--------------TIRQNILFGLPYLRRRYADVIRVCA---LQDDFDSLPNGDF 204
+ A T+ +N+ F +L D+ L LP G
Sbjct: 70 DVAEACHYLGHRNAMKPALTVAENLEFWAAFLGGEELDIAAALEAVGLAPLAH-LPFGY- 127
Query: 205 TVVGERGASLSGGQKARINLARAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGCLTSG 264
LS GQK R+ LAR + N I++LD+P +A+D LF + I L G
Sbjct: 128 ---------LSAGQKRRVALARLLVSNRPIWILDEPTAALDAA-AVALFAELIRAHLAQG 177
>gnl|CDD|213256 cd03289, ABCC_CFTR2, ATP-binding cassette domain 2 of
CFTR,subfamily C. The cystic fibrosis transmembrane
regulator (CFTR), the product of the gene mutated in
patients with cystic fibrosis, has adapted the ABC
transporter structural motif to form a tightly regulated
anion channel at the apical surface of many epithelia.
Use of the term assembly of a functional ion channel
implies the coming together of subunits or at least
smaller not-yet functional components of the active
whole. In fact, on the basis of current knowledge only
the CFTR polypeptide itself is required to form an ATP-
and protein kinase A-dependent low-conductance chloride
channel of the type present in the apical membrane of
many epithelial cells. CFTR displays the typical
organization (IM-ABC)2 and carries a characteristic
hydrophilic R-domain that separates IM1-ABC1 from
IM2-ABC2.
Length = 275
Score = 61.4 bits (149), Expect = 4e-11
Identities = 54/195 (27%), Positives = 92/195 (47%), Gaps = 32/195 (16%)
Query: 87 GHVSLDNVTAQWSLQNADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSG 146
G +++ ++TA+++ + + L +S + P Q ++G G+GK++LL L L G
Sbjct: 1 GQMTVKDLTAKYT-EGGNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLNTE-G 58
Query: 147 KVSLGGTVSYAS--------------QEPWIFAATIRQNILFGLPYLRRRYADVIRVC-- 190
+ + G VS+ S Q+ +IF+ T R+N+ PY + ++ +V
Sbjct: 59 DIQIDG-VSWNSVPLQKWRKAFGVIPQKVFIFSGTFRKNLD---PYGKWSDEEIWKVAEE 114
Query: 191 -ALQDDFDSLPNG-DFTVVGERGASLSGGQKARINLARAVYKNADIYLLDDPLSAVD--- 245
L+ + P DF +V + G LS G K + LAR+V A I LLD+P + +D
Sbjct: 115 VGLKSVIEQFPGQLDFVLV-DGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPIT 173
Query: 246 ----MHVGKHLFEDC 256
K F DC
Sbjct: 174 YQVIRKTLKQAFADC 188
>gnl|CDD|182993 PRK11144, modC, molybdate transporter ATP-binding protein;
Provisional.
Length = 352
Score = 61.8 bits (151), Expect = 4e-11
Identities = 43/164 (26%), Positives = 74/164 (45%), Gaps = 37/164 (22%)
Query: 102 NADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSLGGTV------- 154
+LTL A IT I G GAGKTSL++ I R G++ L G V
Sbjct: 16 TVNLTLPAQGIT-------AIFGRSGAGKTSLINAISGLTRPQKGRIVLNGRVLFDAEKG 68
Query: 155 ----------SYASQEPWIFAA-TIRQNILFGL-PYLRRRYADVIRVCALQDDFDSLPNG 202
Y Q+ +F +R N+ +G+ + ++ ++ + ++ D P
Sbjct: 69 ICLPPEKRRIGYVFQDARLFPHYKVRGNLRYGMAKSMVAQFDKIVALLGIEPLLDRYP-- 126
Query: 203 DFTVVGERGASLSGGQKARINLARAVYKNADIYLLDDPLSAVDM 246
SLSGG+K R+ + RA+ ++ L+D+PL+++D+
Sbjct: 127 ---------GSLSGGEKQRVAIGRALLTAPELLLMDEPLASLDL 161
>gnl|CDD|226643 COG4175, ProV, ABC-type proline/glycine betaine transport system,
ATPase component [Amino acid transport and metabolism].
Length = 386
Score = 62.0 bits (151), Expect = 4e-11
Identities = 41/171 (23%), Positives = 73/171 (42%), Gaps = 46/171 (26%)
Query: 105 LTLNAVSITFKPKQLACIIGAIGAGKTSLLHII--LNELRISSGKVSLGG---------- 152
+ +N S+ + ++ I+G G+GK++L+ ++ L E + G++ + G
Sbjct: 42 VGVNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIE--PTRGEILVDGKDIAKLSAAE 99
Query: 153 -------TVSYASQE----PWIFAATIRQNILFGLPYL-------RRRYADVIRVCALQD 194
+S Q P T+ +N+ FGL R + + + L+
Sbjct: 100 LRELRRKKISMVFQSFALLPHR---TVLENVAFGLEVQGVPKAEREERALEALELVGLEG 156
Query: 195 DFDSLPNGDFTVVGERGASLSGGQKARINLARAVYKNADIYLLDDPLSAVD 245
D PN LSGG + R+ LARA+ + DI L+D+ SA+D
Sbjct: 157 YADKYPN-----------ELSGGMQQRVGLARALANDPDILLMDEAFSALD 196
>gnl|CDD|237649 PRK14254, PRK14254, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 285
Score = 61.0 bits (148), Expect = 6e-11
Identities = 47/167 (28%), Positives = 78/167 (46%), Gaps = 37/167 (22%)
Query: 107 LNAVSITFKPKQLACIIGAIGAGKTSLLHII--LNEL----RISSGKVSLGGTVSYAS-- 158
L+ VS+ Q+ +IG G GK++ L I +N+L R+ G+++ G Y +
Sbjct: 55 LDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVE-GELTFRGKNVYDADV 113
Query: 159 -------------QEPWIFAATIRQNILFGLPY------LRRRYADVIRVCALQDDF-DS 198
Q+P F +I N+ +GL + R + +R AL D+ D
Sbjct: 114 DPVALRRRIGMVFQKPNPFPKSIYDNVAYGLKIQGYDGDIDERVEESLRRAALWDEVKDQ 173
Query: 199 LPNGDFTVVGERGASLSGGQKARINLARAVYKNADIYLLDDPLSAVD 245
L G LSGGQ+ R+ +ARA+ + ++ L+D+P SA+D
Sbjct: 174 L--------DSSGLDLSGGQQQRLCIARAIAPDPEVILMDEPASALD 212
>gnl|CDD|185016 PRK15056, PRK15056, manganese/iron transporter ATP-binding protein;
Provisional.
Length = 272
Score = 60.7 bits (147), Expect = 6e-11
Identities = 51/176 (28%), Positives = 84/176 (47%), Gaps = 25/176 (14%)
Query: 89 VSLDNVTAQWSLQNADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKV 148
+ +++VT W +N L S T +A ++G G+GK++L ++ +R++SGK+
Sbjct: 7 IVVNDVTVTW--RNGHTALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLASGKI 64
Query: 149 SLGGT----------VSYASQEP---WIFAATIRQNILFG----LPYLRRRYA-DVIRVC 190
S+ G V+Y Q W F + ++ G + +LRR D V
Sbjct: 65 SILGQPTRQALQKNLVAYVPQSEEVDWSFPVLVEDVVMMGRYGHMGWLRRAKKRDRQIVT 124
Query: 191 ALQDDFDSLPNGDFTVVGERGASLSGGQKARINLARAVYKNADIYLLDDPLSAVDM 246
A D + +GE LSGGQK R+ LARA+ + + LLD+P + VD+
Sbjct: 125 AALARVDMV-EFRHRQIGE----LSGGQKKRVFLARAIAQQGQVILLDEPFTGVDV 175
>gnl|CDD|236523 PRK09452, potA, putrescine/spermidine ABC transporter ATPase
protein; Reviewed.
Length = 375
Score = 61.5 bits (150), Expect = 7e-11
Identities = 53/199 (26%), Positives = 85/199 (42%), Gaps = 51/199 (25%)
Query: 75 PRKINSVHSNGKGHVSLDNVTAQWS----LQNADLTLNAVSITFKPKQLACIIGAIGAGK 130
+K+N S+ V L ++ + + N DLT+N + ++G G GK
Sbjct: 1 SKKLNKQPSSLSPLVELRGISKSFDGKEVISNLDLTINN-------GEFLTLLGPSGCGK 53
Query: 131 TSLLHIILNELRISSGKVSLGG--------------TV--SYASQEPWIFA-ATIRQNIL 173
T++L +I SG++ L G TV SYA +F T+ +N+
Sbjct: 54 TTVLRLIAGFETPDSGRIMLDGQDITHVPAENRHVNTVFQSYA-----LFPHMTVFENVA 108
Query: 174 FGL-------PYLRRRYADVIRVCALQDDFDSLPNGDFTVVGERGASLSGGQKARINLAR 226
FGL + R + +R+ L++ P LSGGQ+ R+ +AR
Sbjct: 109 FGLRMQKTPAAEITPRVMEALRMVQLEEFAQRKP-----------HQLSGGQQQRVAIAR 157
Query: 227 AVYKNADIYLLDDPLSAVD 245
AV + LLD+ LSA+D
Sbjct: 158 AVVNKPKVLLLDESLSALD 176
>gnl|CDD|130254 TIGR01186, proV, glycine betaine/L-proline transport ATP binding
subunit. This model describes the glycine
betaine/L-proline ATP binding subunit in bacteria and
its equivalents in archaea. This transport system belong
to the larger ATP-Binding Cassette (ABC) transporter
superfamily. The characteristic feature of these
transporter is the obligatory coupling of ATP hydrolysis
to substrate translocation. The minimal configuration of
bacterial ABC transport system: an ATPase or ATP binding
subunit; An integral membrane protein; a hydrophilic
polypetpide, which likely functions as substrate binding
protein. Functionally, this transport system is involved
in osmoregulation. Under conditions of stress, the
organism recruits these transport system to accumulate
glycine betaine and other solutes which offer
osmo-protection. It has been demonstrated that glycine
betaine uptake is accompanied by symport with sodium
ions. The locus has been named variously as proU or
opuA. A gene library from L.lactis functionally
complements an E.coli proU mutant. The comlementing
locus is similar to a opuA locus in B.sutlis. This
clarifies the differences in nomenclature [Transport and
binding proteins, Amino acids, peptides and amines].
Length = 363
Score = 61.4 bits (149), Expect = 7e-11
Identities = 34/166 (20%), Positives = 70/166 (42%), Gaps = 36/166 (21%)
Query: 105 LTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSLGGT----------- 153
+N + ++ I+G G+GK++ + ++ + ++G++ + G
Sbjct: 7 KGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQSPVELR 66
Query: 154 ------VSYASQEPWIFA-ATIRQNILFGLPYL-------RRRYADVIRVCALQDDFDSL 199
+ Q+ +F TI QN G L + + +++++ L++
Sbjct: 67 EVRRKKIGMVFQQFALFPHMTILQNTSLGPELLGWPEQERKEKALELLKLVGLEEYEHRY 126
Query: 200 PNGDFTVVGERGASLSGGQKARINLARAVYKNADIYLLDDPLSAVD 245
P+ LSGG + R+ LARA+ DI L+D+ SA+D
Sbjct: 127 PD-----------ELSGGMQQRVGLARALAAEPDILLMDEAFSALD 161
>gnl|CDD|184585 PRK14239, PRK14239, phosphate transporter ATP-binding protein;
Provisional.
Length = 252
Score = 60.2 bits (146), Expect = 8e-11
Identities = 46/167 (27%), Positives = 79/167 (47%), Gaps = 33/167 (19%)
Query: 106 TLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSLGGTVSYAS------- 158
LN+VS+ F P ++ +IG G+GK++LL I N + + +V++ G++ Y
Sbjct: 20 ALNSVSLDFYPNEITALIGPSGSGKSTLLRSI-NRMNDLNPEVTITGSIVYNGHNIYSPR 78
Query: 159 --------------QEPWIFAATIRQNILFGLPYLRRRYADVIRVCALQDDFDSLPNGD- 203
Q+P F +I +N+++GL R + L + + G
Sbjct: 79 TDTVDLRKEIGMVFQQPNPFPMSIYENVVYGL-----RLKGIKDKQVLDEAVEKSLKGAS 133
Query: 204 -FTVVGER----GASLSGGQKARINLARAVYKNADIYLLDDPLSAVD 245
+ V +R LSGGQ+ R+ +AR + + I LLD+P SA+D
Sbjct: 134 IWDEVKDRLHDSALGLSGGQQQRVCIARVLATSPKIILLDEPTSALD 180
>gnl|CDD|224042 COG1117, PstB, ABC-type phosphate transport system, ATPase
component [Inorganic ion transport and metabolism].
Length = 253
Score = 60.2 bits (147), Expect = 1e-10
Identities = 44/168 (26%), Positives = 74/168 (44%), Gaps = 38/168 (22%)
Query: 107 LNAVSITFKPKQLACIIGAIGAGKTSLLHII--LNEL----RISSGKVSLGG-------- 152
L +++ ++ +IG G GK++LL + +N+L R+ G+V L G
Sbjct: 23 LKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVE-GEVLLDGKNIYDPKV 81
Query: 153 -------TVSYASQEPWIFAATIRQNILFGLPY-------LRRRYADVIRVCALQDDF-D 197
V Q+P F +I N+ +GL L ++ AL D+ D
Sbjct: 82 DVVELRRRVGMVFQKPNPFPMSIYDNVAYGLRLHGIKDKELDEIVESSLKKAALWDEVKD 141
Query: 198 SLPNGDFTVVGERGASLSGGQKARINLARAVYKNADIYLLDDPLSAVD 245
L + LSGGQ+ R+ +ARA+ ++ L+D+P SA+D
Sbjct: 142 RL--------HKSALGLSGGQQQRLCIARALAVKPEVLLMDEPTSALD 181
>gnl|CDD|213228 cd03261, ABC_Org_Solvent_Resistant, ATP-binding cassette transport
system involved in resistant to organic solvents. ABC
transporters are a large family of proteins involved in
the transport of a wide variety of different compounds,
like sugars, ions, peptides, and more complex organic
molecules. The nucleotide binding domain shows the
highest similarity between all members of the family.
ABC transporters are a subset of nucleotide hydrolases
that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing proteins.
Length = 235
Score = 59.8 bits (146), Expect = 1e-10
Identities = 42/164 (25%), Positives = 71/164 (43%), Gaps = 36/164 (21%)
Query: 107 LNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSLGGT------------- 153
L V + + ++ IIG G+GK++LL +I+ LR SG+V + G
Sbjct: 16 LKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDISGLSEAELYRL 75
Query: 154 ---VSYASQEPWIFAA-TIRQNILFGL--------PYLRRRYADVIRVCALQDDFDSLPN 201
+ Q +F + T+ +N+ F L +R + + L+ D P
Sbjct: 76 RRRMGMLFQSGALFDSLTVFENVAFPLREHTRLSEEEIREIVLEKLEAVGLRGAEDLYP- 134
Query: 202 GDFTVVGERGASLSGGQKARINLARAVYKNADIYLLDDPLSAVD 245
A LSGG K R+ LARA+ + ++ L D+P + +D
Sbjct: 135 ----------AELSGGMKKRVALARALALDPELLLYDEPTAGLD 168
>gnl|CDD|237648 PRK14250, PRK14250, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 241
Score = 59.4 bits (144), Expect = 2e-10
Identities = 40/159 (25%), Positives = 76/159 (47%), Gaps = 28/159 (17%)
Query: 104 DLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSLGGT---------- 153
L +S+ F+ + I+G GAGK++L+ +I + + G + + G
Sbjct: 16 KEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSILIDGVDIKTIDVIDL 75
Query: 154 ---VSYASQEPWIFAATIRQNILFGLPYLR-RRYADV---IRVCALQDDFDSLPNGDFTV 206
+ Q+P +F T++ NI +G P L+ + DV + + L ++ + +
Sbjct: 76 RRKIGMVFQQPHLFEGTVKDNIEYG-PMLKGEKNVDVEYYLSIVGLNKEYATRDVKN--- 131
Query: 207 VGERGASLSGGQKARINLARAVYKNADIYLLDDPLSAVD 245
LSGG+ R+++AR + N ++ LLD+P SA+D
Sbjct: 132 -------LSGGEAQRVSIARTLANNPEVLLLDEPTSALD 163
>gnl|CDD|213229 cd03262, ABC_HisP_GlnQ, ATP-binding cassette domain of the
histidine and glutamine transporters. HisP and GlnQ are
the ATP-binding components of the bacterial periplasmic
histidine and glutamine permeases, respectively.
Histidine permease is a multi-subunit complex containing
the HisQ and HisM integral membrane subunits and two
copies of HisP. HisP has properties intermediate between
those of integral and peripheral membrane proteins and
is accessible from both sides of the membrane,
presumably by its interaction with HisQ and HisM. The
two HisP subunits form a homodimer within the complex.
The domain structure of the amino acid uptake systems is
typical for prokaryotic extracellular solute binding
protein-dependent uptake systems. All of the amino acid
uptake systems also have at least one, and in a few
cases, two extracellular solute binding proteins located
in the periplasm of Gram-negative bacteria, or attached
to the cell membrane of Gram-positive bacteria. The
best-studied member of the PAAT (polar amino acid
transport) family is the HisJQMP system of S.
typhimurium, where HisJ is the extracellular solute
binding proteins and HisP is the ABC protein.
Length = 213
Score = 59.1 bits (144), Expect = 2e-10
Identities = 43/164 (26%), Positives = 68/164 (41%), Gaps = 37/164 (22%)
Query: 107 LNAVSITFKPKQLACIIGAIGAGKTSLLHIILNEL-RISSGKVSLGGTVSYASQEPW--- 162
L + +T K ++ IIG G+GK++LL I N L SG + + G ++
Sbjct: 16 LKGIDLTVKKGEVVVIIGPSGSGKSTLLRCI-NLLEEPDSGTIIIDGLKLTDDKKNINEL 74
Query: 163 ------------IFA-ATIRQNILFGLPYLRRRYADVIRVCALQ--------DDFDSLPN 201
+F T+ +NI ++ AL+ D D+ P
Sbjct: 75 RQKVGMVFQQFNLFPHLTVLENITLAPIKVKGMSKAEAEERALELLEKVGLADKADAYP- 133
Query: 202 GDFTVVGERGASLSGGQKARINLARAVYKNADIYLLDDPLSAVD 245
A LSGGQ+ R+ +ARA+ N + L D+P SA+D
Sbjct: 134 ----------AQLSGGQQQRVAIARALAMNPKVMLFDEPTSALD 167
>gnl|CDD|213261 cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette domain of the
osmoprotectant proline/glycine betaine uptake system.
This family comprises the glycine betaine/L-proline ATP
binding subunit in bacteria and its equivalents in
archaea. This transport system belong to the larger
ATP-Binding Cassette (ABC) transporter superfamily. The
characteristic feature of these transporters is the
obligatory coupling of ATP hydrolysis to substrate
translocation. ABC transporters are a subset of
nucleotide hydrolases that contain a signature motif,
Q-loop, and H-loop/switch region, in addition to, the
Walker A motif/P-loop and Walker B motif commonly found
in a number of ATP- and GTP-binding and hydrolyzing
proteins.
Length = 269
Score = 59.2 bits (144), Expect = 2e-10
Identities = 44/164 (26%), Positives = 75/164 (45%), Gaps = 36/164 (21%)
Query: 107 LNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSLGGT-VSYASQEPWI-- 163
+N VS+ + ++ I+G G+GK++LL I + +SGKV + G ++ S++
Sbjct: 40 VNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAMSRKELREL 99
Query: 164 -----------FA----ATIRQNILFGLPYL-------RRRYADVIRVCALQDDFDSLPN 201
FA T+ +N+ FGL R A+ + + L+ P+
Sbjct: 100 RRKKISMVFQSFALLPHRTVLENVAFGLEVQGVPRAEREERAAEALELVGLEGWEHKYPD 159
Query: 202 GDFTVVGERGASLSGGQKARINLARAVYKNADIYLLDDPLSAVD 245
LSGG + R+ LARA+ + DI L+D+ SA+D
Sbjct: 160 -----------ELSGGMQQRVGLARALAVDPDILLMDEAFSALD 192
>gnl|CDD|172733 PRK14245, PRK14245, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 250
Score = 58.9 bits (142), Expect = 2e-10
Identities = 44/168 (26%), Positives = 79/168 (47%), Gaps = 37/168 (22%)
Query: 107 LNAVSITFKPKQLACIIGAIGAGKTSLLHII--LNELRISS---GKVSLGGTVSYAS--- 158
L +S+ + K + IG G GK++ L + +N+L ++ G++ + G Y
Sbjct: 19 LKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDGRNIYDKGVQ 78
Query: 159 ------------QEPWIFAATIRQNILFGL--------PYLRRRYADVIRVCALQDDF-D 197
Q P F +I +N+ +GL ++R+R + ++ AL D+ D
Sbjct: 79 VDELRKNVGMVFQRPNPFPKSIFENVAYGLRVNGVKDNAFIRQRVEETLKGAALWDEVKD 138
Query: 198 SLPNGDFTVVGERGASLSGGQKARINLARAVYKNADIYLLDDPLSAVD 245
L F +LSGGQ+ R+ +ARA+ + + L+D+P SA+D
Sbjct: 139 KLKESAF--------ALSGGQQQRLCIARAMAVSPSVLLMDEPASALD 178
>gnl|CDD|213188 cd03221, ABCF_EF-3, ATP-binding cassette domain of elongation
factor 3, subfamily F. Elongation factor 3 (EF-3) is a
cytosolic protein required by fungal ribosomes for in
vitro protein synthesis and for in vivo growth. EF-3
stimulates the binding of the EF-1: GTP: aa-tRNA ternary
complex to the ribosomal A site by facilitated release
of the deacylated tRNA from the E site. The reaction
requires ATP hydrolysis. EF-3 contains two ATP
nucleotide binding sequence (NBS) motifs. NBSI is
sufficient for the intrinsic ATPase activity. NBSII is
essential for the ribosome-stimulated functions.
Length = 144
Score = 57.1 bits (139), Expect = 3e-10
Identities = 35/152 (23%), Positives = 57/152 (37%), Gaps = 55/152 (36%)
Query: 89 VSLDNVTAQWSLQNADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKV 148
+ L+N++ + L L +S+T P ++G GAGK++LL +I EL
Sbjct: 1 IELENLSKTYG---GKLLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPDE--- 54
Query: 149 SLGGTVSYASQEPWIFAATIRQNILFGLPYLRRRYADVIRVCALQDDFDSLPNGDFTVVG 208
G V+ W I Y +
Sbjct: 55 ---GIVT------WGSTVKI--------GYFEQ--------------------------- 70
Query: 209 ERGASLSGGQKARINLARAVYKNADIYLLDDP 240
LSGG+K R+ LA+ + +N ++ LLD+P
Sbjct: 71 -----LSGGEKMRLALAKLLLENPNLLLLDEP 97
>gnl|CDD|213262 cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cassette domain of
the osmoprotectant transporter. OpuCA is a the ATP
binding component of a bacterial solute transporter that
serves a protective role to cells growing in a
hyperosmolar environment. ABC (ATP-binding cassette)
transporter nucleotide-binding domain; ABC transporters
are a large family of proteins involved in the transport
of a wide variety of different compounds, like sugars,
ions, peptides, and more complex organic molecules. The
nucleotide binding domain shows the highest similarity
between all members of the family. ABC transporters are
a subset of nucleotide hydrolases that contain a
signature motif, Q-loop, and H-loop/switch region, in
addition, to the Walker A motif/P-loop and Walker B
motif commonly found in a number of ATP- and GTP-binding
and hydrolyzing proteins.
Length = 242
Score = 58.5 bits (142), Expect = 3e-10
Identities = 42/177 (23%), Positives = 78/177 (44%), Gaps = 30/177 (16%)
Query: 89 VSLDNVTAQWSLQNADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKV 148
+ +NVT ++ +N +++ + +IG G+GKT+ + +I + +SG++
Sbjct: 1 IEFENVTKRY--GGGKKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEI 58
Query: 149 SLGG-------------TVSYASQEPWIFA-ATIRQNI-----LFGLPYLRRRYADVIRV 189
+ G + Y Q+ +F T+ +NI L P + R R
Sbjct: 59 FIDGEDIREQDPVELRRKIGYVIQQIGLFPHMTVEENIALVPKLLKWPKEKIRE----RA 114
Query: 190 CALQDDFDSLPNGDFTVVGER-GASLSGGQKARINLARAVYKNADIYLLDDPLSAVD 245
L L +F +R LSGGQ+ R+ +ARA+ + + L+D+P A+D
Sbjct: 115 DELLALVG-LDPAEF---ADRYPHELSGGQQQRVGVARALAADPPLLLMDEPFGALD 167
>gnl|CDD|225438 COG2884, FtsE, Predicted ATPase involved in cell division [Cell
division and chromosome partitioning].
Length = 223
Score = 58.4 bits (142), Expect = 3e-10
Identities = 42/181 (23%), Positives = 77/181 (42%), Gaps = 37/181 (20%)
Query: 89 VSLDNVTAQWSLQNADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKV 148
+ +NV+ + L VS + + G GAGK++LL +I E R + GK+
Sbjct: 2 IRFENVSKAYP--GGREALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKI 59
Query: 149 SLGG---TVSYASQEPW-------IFA-------ATIRQNILFGL-------PYLRRRYA 184
+ G + + P+ +F T+ +N+ L +RRR +
Sbjct: 60 LVNGHDLSRLKGREIPFLRRQIGVVFQDFRLLPDRTVYENVALPLRVIGKPPREIRRRVS 119
Query: 185 DVIRVCALQDDFDSLPNGDFTVVGERGASLSGGQKARINLARAVYKNADIYLLDDPLSAV 244
+V+ + L+ +LP+ LSGG++ R+ +ARA+ + L D+P +
Sbjct: 120 EVLDLVGLKHKARALPS-----------QLSGGEQQRVAIARAIVNQPAVLLADEPTGNL 168
Query: 245 D 245
D
Sbjct: 169 D 169
>gnl|CDD|182733 PRK10790, PRK10790, putative multidrug transporter
membrane\ATP-binding components; Provisional.
Length = 592
Score = 59.3 bits (144), Expect = 5e-10
Identities = 42/172 (24%), Positives = 89/172 (51%), Gaps = 15/172 (8%)
Query: 87 GHVSLDNVTAQWSLQNADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSG 146
G + +DNV+ ++ ++ +L L ++++ + ++G G+GK++L +++ ++ G
Sbjct: 339 GRIDIDNVS--FAYRDDNLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPLTEG 396
Query: 147 KVSLGG----TVSYAS---------QEPWIFAATIRQNILFGLPYLRRRYADVIRVCALQ 193
++ L G ++S++ Q+P + A T N+ G + + L
Sbjct: 397 EIRLDGRPLSSLSHSVLRQGVAMVQQDPVVLADTFLANVTLGRDISEEQVWQALETVQLA 456
Query: 194 DDFDSLPNGDFTVVGERGASLSGGQKARINLARAVYKNADIYLLDDPLSAVD 245
+ SLP+G +T +GE+G +LS GQK + LAR + + I +LD+ + +D
Sbjct: 457 ELARSLPDGLYTPLGEQGNNLSVGQKQLLALARVLVQTPQILILDEATANID 508
>gnl|CDD|237646 PRK14237, PRK14237, phosphate transporter ATP-binding protein;
Provisional.
Length = 267
Score = 57.8 bits (140), Expect = 6e-10
Identities = 46/171 (26%), Positives = 71/171 (41%), Gaps = 43/171 (25%)
Query: 107 LNAVSITFKPKQLACIIGAIGAGKTSLLHIILNEL--RISSGKVSLGGTVSYAS------ 158
+ + + F+ ++ +IG G+GK++ L LN + I +V+ G + Y
Sbjct: 36 IKGIDMQFEKNKITALIGPSGSGKSTYLRS-LNRMNDTIDIARVT--GQILYRGIDINRK 92
Query: 159 ---------------QEPWIFAATIRQNILFGL--------PYLRRRYADVIRVCALQDD 195
Q P FA +I +NI F L L ++ AL D
Sbjct: 93 EINVYEMRKHIGMVFQRPNPFAKSIYENITFALERAGVKDKKVLDEIVETSLKQAALWDQ 152
Query: 196 F-DSLPNGDFTVVGERGASLSGGQKARINLARAVYKNADIYLLDDPLSAVD 245
D L T LSGGQ+ R+ +ARA+ DI L+D+P SA+D
Sbjct: 153 VKDDLHKSALT--------LSGGQQQRLCIARAIAVKPDILLMDEPASALD 195
>gnl|CDD|131721 TIGR02673, FtsE, cell division ATP-binding protein FtsE. This
model describes FtsE, a member of the ABC transporter
ATP-binding protein family. This protein, and its
permease partner FtsX, localize to the division site. In
a number of species, the ftsEX gene pair is located next
to FtsY, the signal recognition particle-docking protein
[Cellular processes, Cell division].
Length = 214
Score = 57.3 bits (139), Expect = 7e-10
Identities = 41/194 (21%), Positives = 76/194 (39%), Gaps = 45/194 (23%)
Query: 88 HVSLDNVTAQWSLQNADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGK 147
+VS +L + VS+ + + + G GAGKT+LL ++ L S G+
Sbjct: 6 NVSKAYPGGVAALHD-------VSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQ 58
Query: 148 VSLGGT----------------VSYASQE-PWIFAATIRQNILFGL-------PYLRRRY 183
V + G + Q+ + T+ +N+ L ++RR
Sbjct: 59 VRIAGEDVNRLRGRQLPLLRRRIGVVFQDFRLLPDRTVYENVALPLEVRGKKEREIQRRV 118
Query: 184 ADVIRVCALQDDFDSLPNGDFTVVGERGASLSGGQKARINLARAVYKNADIYLLDDPLSA 243
+R L+ D+ P LSGG++ R+ +ARA+ + + L D+P
Sbjct: 119 GAALRQVGLEHKADAFPE-----------QLSGGEQQRVAIARAIVNSPPLLLADEPTGN 167
Query: 244 VDMHVGK---HLFE 254
+D + + L +
Sbjct: 168 LDPDLSERILDLLK 181
>gnl|CDD|213255 cd03288, ABCC_SUR2, ATP-binding cassette domain 2 of the
sulfonylurea receptor SUR. The SUR domain 2. The
sulfonylurea receptor SUR is an ATP binding cassette
(ABC) protein of the ABCC/MRP family. Unlike other ABC
proteins, it has no intrinsic transport function,
neither active nor passive, but associates with the
potassium channel proteins Kir6.1 or Kir6.2 to form the
ATP-sensitive potassium (K(ATP)) channel. Within the
channel complex, SUR serves as a regulatory subunit that
fine-tunes the gating of Kir6.x in response to
alterations in cellular metabolism. It constitutes a
major pharmaceutical target as it binds numerous drugs,
K(ATP) channel openers and blockers, capable of up- or
down-regulating channel activity.
Length = 257
Score = 57.6 bits (139), Expect = 8e-10
Identities = 46/173 (26%), Positives = 78/173 (45%), Gaps = 14/173 (8%)
Query: 87 GHVSLDNVTAQWSLQNADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSG 146
G + + ++ ++ N L V KP Q I G G+GK+SL + I G
Sbjct: 18 GEIKIHDLCVRYE-NNLKPVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIFDG 76
Query: 147 KVSLGGT-------------VSYASQEPWIFAATIRQNILFGLPYLRRRYADVIRVCALQ 193
K+ + G +S Q+P +F+ +IR N+ R + + + L+
Sbjct: 77 KIVIDGIDISKLPLHTLRSRLSIILQDPILFSGSIRFNLDPECKCTDDRLWEALEIAQLK 136
Query: 194 DDFDSLPNGDFTVVGERGASLSGGQKARINLARAVYKNADIYLLDDPLSAVDM 246
+ SLP G VV E G + S GQ+ LARA + + I ++D+ +++DM
Sbjct: 137 NMVKSLPGGLDAVVTEGGENFSVGQRQLFCLARAFVRKSSILIMDEATASIDM 189
>gnl|CDD|226963 COG4604, CeuD, ABC-type enterochelin transport system, ATPase
component [Inorganic ion transport and metabolism].
Length = 252
Score = 56.9 bits (138), Expect = 1e-09
Identities = 50/186 (26%), Positives = 85/186 (45%), Gaps = 40/186 (21%)
Query: 89 VSLDNVTAQWSLQNADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKV 148
++++NV+ + + L+ VS+ + IIG GAGK++LL ++ L+ SG++
Sbjct: 2 ITIENVSKSY---GTKVVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKKDSGEI 58
Query: 149 SLGG-------------TVSYASQEPWIFAA-TIRQNILFG-LPYLRRRYA--------D 185
++ G +S QE I + T+R + FG PY + R +
Sbjct: 59 TIDGLELTSTPSKELAKKLSILKQENHINSRLTVRDLVGFGRFPYSQGRLTKEDRRIINE 118
Query: 186 VIRVCALQDDFDSLPNGDFTVVGERGASLSGGQKARINLARAVYKNADIYLLDDPLSAVD 245
I L+D D + LSGGQ+ R +A + ++ D LLD+PL+ +D
Sbjct: 119 AIEYLHLEDLSDRYLD-----------ELSGGQRQRAFIAMVLAQDTDYVLLDEPLNNLD 167
Query: 246 MHVGKH 251
M KH
Sbjct: 168 M---KH 170
>gnl|CDD|213235 cd03268, ABC_BcrA_bacitracin_resist, ATP-binding cassette domain of
the bacitracin-resistance transporter. The BcrA
subfamily represents ABC transporters involved in
peptide antibiotic resistance. Bacitracin is a
dodecapeptide antibiotic produced by B. licheniformis
and B. subtilis. The synthesis of bacitracin is
non-ribosomally catalyzed by a multi-enzyme complex
BcrABC. Bacitracin has potent antibiotic activity
against gram-positive bacteria. The inhibition of
peptidoglycan biosynthesis is the best characterized
bacterial effect of bacitracin. The bacitracin
resistance of B. licheniformis is mediated by the ABC
transporter Bcr which is composed of two identical BcrA
ATP-binding subunits and one each of the integral
membrane proteins, BcrB and BcrC. B. subtilis cells
carrying bcr genes on high-copy number plasmids develop
collateral detergent sensitivity, a similar phenomenon
in human cells with overexpressed multi-drug resistance
P-glycoprotein.
Length = 208
Score = 56.5 bits (137), Expect = 1e-09
Identities = 37/157 (23%), Positives = 66/157 (42%), Gaps = 32/157 (20%)
Query: 107 LNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSLGG-----TVSYASQ-- 159
L+ +S+ K ++ +G GAGKT+ + IIL ++ SG+++ G + +
Sbjct: 16 LDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSYQKNIEALRRIG 75
Query: 160 ----EPWIFAA-TIRQNILFGLPYLRRRYADVIRVCALQDDFDSLPNGDFTVVGERGA-- 212
P + T R+N+ L R + V VVG + +
Sbjct: 76 ALIEAPGFYPNLTARENLRLLARLLGIRKKRIDEVLD--------------VVGLKDSAK 121
Query: 213 ----SLSGGQKARINLARAVYKNADIYLLDDPLSAVD 245
S G K R+ +A A+ N D+ +LD+P + +D
Sbjct: 122 KKVKGFSLGMKQRLGIALALLGNPDLLILDEPTNGLD 158
>gnl|CDD|226617 COG4133, CcmA, ABC-type transport system involved in cytochrome c
biogenesis, ATPase component [Posttranslational
modification, protein turnover, chaperones].
Length = 209
Score = 56.1 bits (136), Expect = 1e-09
Identities = 42/188 (22%), Positives = 74/188 (39%), Gaps = 22/188 (11%)
Query: 89 VSLDNVTAQWSLQNADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKV 148
+ +N++ + + + +S T + I G GAGKT+LL I+ LR +G+
Sbjct: 3 LEAENLSCE---RGERTLFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLRPDAGE- 58
Query: 149 SLGGTVSYASQEPWIFAATIRQNILF--GLPYLRRRYADVIRVCALQDDFDSLPNGD--- 203
V + + + Q +L+ P ++ + + Q S
Sbjct: 59 -----VYWQGEPIQNVRESYHQALLYLGHQPGIKTELTALENLHFWQRFHGSGNAATIWE 113
Query: 204 -FTVVGERG------ASLSGGQKARINLARAVYKNADIYLLDDPLSAVDMHVGKHLFEDC 256
VG G LS GQ+ R+ LAR A +++LD+P +A+D G L
Sbjct: 114 ALAQVGLAGLEDLPVGQLSAGQQRRVALARLWLSPAPLWILDEPFTALDKE-GVALLTAL 172
Query: 257 ISGCLTSG 264
++ G
Sbjct: 173 MAAHAAQG 180
>gnl|CDD|172730 PRK14242, PRK14242, phosphate transporter ATP-binding protein;
Provisional.
Length = 253
Score = 56.7 bits (137), Expect = 1e-09
Identities = 48/170 (28%), Positives = 77/170 (45%), Gaps = 37/170 (21%)
Query: 105 LTLNAVSITFKPKQLACIIGAIGAGKTSLLHII--LNEL---RISSGKVSLGGTVSYAS- 158
L+ +S+ F+ Q+ +IG G GK++ L + +N+L G++ L G Y
Sbjct: 20 QALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYDPH 79
Query: 159 --------------QEPWIFAATIRQNILFGL--------PYLRRRYADVIRVCALQDDF 196
Q+P F +I +N+ +GL YL R +R AL D+
Sbjct: 80 VDVVELRRRVGMVFQKPNPFPKSIFENVAYGLRVNGVKDKAYLAERVERSLRHAALWDEV 139
Query: 197 -DSLPNGDFTVVGERGASLSGGQKARINLARAVYKNADIYLLDDPLSAVD 245
D L E LSGGQ+ R+ +ARA+ ++ L+D+P SA+D
Sbjct: 140 KDRL--------HESALGLSGGQQQRLCIARALAVEPEVLLMDEPASALD 181
>gnl|CDD|237422 PRK13548, hmuV, hemin importer ATP-binding subunit; Provisional.
Length = 258
Score = 56.3 bits (137), Expect = 2e-09
Identities = 45/159 (28%), Positives = 72/159 (45%), Gaps = 24/159 (15%)
Query: 107 LNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSLGGTVSYASQEPWIFA- 165
L+ VS+T +P ++ I+G GAGK++LL + EL SG+V L G A P A
Sbjct: 18 LDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEVRLNGR-PLADWSPAELAR 76
Query: 166 --ATIRQNILFGLPYLRRRYADVIRV-----CALQDDFDSLPNGDFTVVGERG------A 212
A + Q+ P+ +V+ + + + D+L V
Sbjct: 77 RRAVLPQHSSLSFPFTVE---EVVAMGRAPHGLSRAEDDALVAAALAQVDLAHLAGRDYP 133
Query: 213 SLSGGQKARINLARA---VYKNAD---IYLLDDPLSAVD 245
LSGG++ R+ LAR +++ LLD+P SA+D
Sbjct: 134 QLSGGEQQRVQLARVLAQLWEPDGPPRWLLLDEPTSALD 172
>gnl|CDD|224044 COG1119, ModF, ABC-type molybdenum transport system, ATPase
component/photorepair protein PhrA [Inorganic ion
transport and metabolism].
Length = 257
Score = 56.2 bits (136), Expect = 2e-09
Identities = 47/193 (24%), Positives = 78/193 (40%), Gaps = 42/193 (21%)
Query: 89 VSLDNVTAQWSLQNADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKV 148
+ L NV+ + +N L +S P + I+G GAGKT+LL ++ E SSG V
Sbjct: 32 IELKNVSVR---RNGKKILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHPPSSGDV 88
Query: 149 SLGGTVSYASQEPWIFAATIRQNILFGLPYLRRRYADVIRVCALQDDFDSLPNGDFTVVG 208
+L G + IF +R+ I L R+ V D + +G F +G
Sbjct: 89 TLLGRR--FGKGETIF--ELRKRIGLVSSELHERFRVRETV------RDVVLSGFFASIG 138
Query: 209 ----------------------------ERGASLSGGQKARINLARAVYKNADIYLLDDP 240
SLS G++ R+ +ARA+ K+ ++ +LD+P
Sbjct: 139 IYQEDLTAEDLAAAQWLLELLGAKHLADRPFGSLSQGEQRRVLIARALVKDPELLILDEP 198
Query: 241 LSAVDMHVGKHLF 253
+D+ +
Sbjct: 199 AQGLDLI-AREQL 210
>gnl|CDD|163483 TIGR03771, anch_rpt_ABC, anchored repeat-type ABC transporter,
ATP-binding subunit. This protein family is the
ATP-binding cassette subunit of binding
protein-dependent ABC transporter complex that strictly
co-occurs with TIGR03769. TIGRFAMs model TIGR03769
describes a protein domain that occurs singly or as one
of up to three repeats in proteins of a number of
Actinobacteria, including Propionibacterium acnes
KPA171202. The TIGR03769 domain occurs both in an
adjacent gene for the substrate-binding protein and in
additional (often nearby) proteins, often with
LPXTG-like sortase recognition signals. Homologous
ATP-binding subunits outside the scope of this family
include manganese transporter MntA in Synechocystis sp.
PCC 6803 and chelated iron transporter subunits. The
function of this transporter complex is unknown
[Transport and binding proteins, Unknown substrate].
Length = 223
Score = 56.0 bits (135), Expect = 2e-09
Identities = 44/152 (28%), Positives = 71/152 (46%), Gaps = 23/152 (15%)
Query: 112 ITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSLGG--------TVSYASQE--- 160
++ +L ++G GAGKT+LL IL + + G V + G + Y Q
Sbjct: 1 LSADKGELLGLLGPNGAGKTTLLRAILGLIPPAKGTVKVAGASPGKGWRHIGYVPQRHEF 60
Query: 161 PWIFAATIRQNILFG----LPYLRR-RYADVIRVCALQDDFDSLPNGDFTVVGERG-ASL 214
W F ++ ++ G + +LRR AD V D+L T + +R L
Sbjct: 61 AWDFPISVAHTVMSGRTGHIGWLRRPCVADFAAVR------DALRRVGLTELADRPVGEL 114
Query: 215 SGGQKARINLARAVYKNADIYLLDDPLSAVDM 246
SGGQ+ R+ +ARA+ + LLD+P + +DM
Sbjct: 115 SGGQRQRVLVARALATRPSVLLLDEPFTGLDM 146
>gnl|CDD|132027 TIGR02982, heterocyst_DevA, ABC exporter ATP-binding subunit, DevA
family. Members of this protein family are found mostly
in the Cyanobacteria, but also in the Planctomycetes.
Cyanobacterial examples are involved in heterocyst
formation, by which some fraction of members of the
colony undergo a developmental change and become capable
of nitrogen fixation. The DevBCA proteins are thought
export of either heterocyst-specific glycolipids or an
enzyme essential for formation of the laminated layer
found in heterocysts.
Length = 220
Score = 55.8 bits (135), Expect = 2e-09
Identities = 48/173 (27%), Positives = 76/173 (43%), Gaps = 36/173 (20%)
Query: 107 LNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVS-LGGTVSYASQEP---- 161
L +++ P ++ + G G+GKT+LL +I + G + LG + AS++
Sbjct: 21 LFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSVQEGSLKVLGQELYGASEKELVQL 80
Query: 162 -----WIFAA-------TIRQNILFGL---PYL-----RRRYADVIRVCALQDDFDSLPN 201
+IF A T RQN+ L P L R R ++ L D D P+
Sbjct: 81 RRNIGYIFQAHNLLGFLTARQNVQMALELQPNLSYQEARERARAMLEAVGLGDHLDYYPH 140
Query: 202 GDFTVVGERGASLSGGQKARINLARAVYKNADIYLLDDPLSAVDMHVGKHLFE 254
LSGGQK R+ +ARA+ + L D+P +A+D G+ + E
Sbjct: 141 N-----------LSGGQKQRVAIARALVHRPKLVLADEPTAALDSKSGRDVVE 182
>gnl|CDD|172747 PRK14259, PRK14259, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 269
Score = 56.0 bits (135), Expect = 2e-09
Identities = 50/188 (26%), Positives = 77/188 (40%), Gaps = 46/188 (24%)
Query: 89 VSLDNVTAQWSLQNADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHII--LNELRISS- 145
+SL NVT + A + V ++ +IG G GK+++L + +N+L I
Sbjct: 14 ISLQNVTISYGTFEA---VKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDL-IEGC 69
Query: 146 ---GKVSLGGTVSYAS---------------QEPWIFAATIRQNILFGLPYLRRRYADVI 187
G+V GT Y Q+P F +I +NI FG
Sbjct: 70 SLKGRVLFDGTDLYDPRVDPVEVRRRIGMVFQQPNPFPKSIYENIAFG-----------A 118
Query: 188 RVCALQDDFDSLPNGDFTV----------VGERGASLSGGQKARINLARAVYKNADIYLL 237
R+ D D L + E G SLSGGQ+ R+ +AR + ++ L+
Sbjct: 119 RINGYTGDMDELVERSLRKAAVWDECKDKLNESGYSLSGGQQQRLCIARTIAIEPEVILM 178
Query: 238 DDPLSAVD 245
D+P SA+D
Sbjct: 179 DEPCSALD 186
>gnl|CDD|131368 TIGR02315, ABC_phnC, phosphonate ABC transporter, ATP-binding
protein. Phosphonates are a class of
phosphorus-containing organic compound with a stable
direct C-P bond rather than a C-O-P linkage. A number of
bacterial species have operons, typically about 14 genes
in size, with genes for ATP-dependent transport of
phosphonates, degradation, and regulation of the
expression of the system. Members of this protein family
are the ATP-binding cassette component of tripartite ABC
transporters of phosphonates [Transport and binding
proteins, Anions].
Length = 243
Score = 55.8 bits (135), Expect = 3e-09
Identities = 46/174 (26%), Positives = 70/174 (40%), Gaps = 39/174 (22%)
Query: 102 NADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSLGGT-------- 153
N L +++ P + IIG GAGK++LL I + SSG + L GT
Sbjct: 13 NGKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSILLEGTDITKLRGK 72
Query: 154 --------VSYASQE-PWIFAATIRQNILFGLPYLRRRYADVIRVCALQDDFDSLPNGD- 203
+ Q I T+ +N+L G R Y R D
Sbjct: 73 KLRKLRRRIGMIFQHYNLIERLTVLENVLHG----RLGYKPTWRSL-----LGRFSEEDK 123
Query: 204 ------FTVVG------ERGASLSGGQKARINLARAVYKNADIYLLDDPLSAVD 245
VG +R LSGGQ+ R+ +ARA+ + D+ L D+P++++D
Sbjct: 124 ERALSALERVGLADKAYQRADQLSGGQQQRVAIARALAQQPDLILADEPIASLD 177
>gnl|CDD|131377 TIGR02324, CP_lyasePhnL, phosphonate C-P lyase system protein PhnL.
Members of this family are the PhnL protein of C-P
lyase systems for utilization of phosphonates. These
systems resemble phosphonatase-based systems in having a
three component ABC transporter, where TIGR01097 is the
permease, TIGR01098 is the phosphonates binding protein,
and TIGR02315 is the ATP-binding cassette (ABC) protein.
They differ, however, in having, typically, ten or more
additional genes, many of which are believed to form a
membrane-associated C-P lysase complex. This protein
(PhnL) and the adjacent-encoded PhnK (TIGR02323)
resemble transporter ATP-binding proteins but are
suggested, based on mutatgenesis studies, to be part of
this C-P lyase complex rather than part of a transporter
per se.
Length = 224
Score = 55.5 bits (134), Expect = 3e-09
Identities = 44/163 (26%), Positives = 66/163 (40%), Gaps = 29/163 (17%)
Query: 107 LNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKV---SLGGTVSYASQEPWI 163
L VS+T + + G GAGK++LL + SG++ G V A P
Sbjct: 24 LKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLPDSGRILVRHEGAWVDLAQASPRE 83
Query: 164 FAATIRQNILFGLPYLRRRYADVI-RVCALQDDFDSL-PNG-DFTVVGERGASL------ 214
R+ I + +LR VI RV AL+ + L G R L
Sbjct: 84 VLEVRRKTIGYVSQFLR-----VIPRVSALEVVAEPLLERGVPREAARARARELLARLNI 138
Query: 215 ------------SGGQKARINLARAVYKNADIYLLDDPLSAVD 245
SGG++ R+N+AR + I LLD+P +++D
Sbjct: 139 PERLWHLPPATFSGGEQQRVNIARGFIADYPILLLDEPTASLD 181
>gnl|CDD|182692 PRK10744, pstB, phosphate transporter ATP-binding protein;
Provisional.
Length = 260
Score = 55.4 bits (134), Expect = 4e-09
Identities = 46/170 (27%), Positives = 71/170 (41%), Gaps = 41/170 (24%)
Query: 107 LNAVSITFKPKQLACIIGAIGAGKTSLLHIILN-------ELRISSGKVSLGGT------ 153
L +++ Q+ IG G GK++LL N E R + G++ L G
Sbjct: 29 LKNINLDIAKNQVTAFIGPSGCGKSTLLRT-FNRMYELYPEQR-AEGEILLDGENILTPK 86
Query: 154 ---------VSYASQEPWIFAATIRQNILFGLPYLRR--------RYADVIRVCALQDDF 196
V Q+P F +I NI FG+ + R + AL ++
Sbjct: 87 QDIALLRAKVGMVFQKPTPFPMSIYDNIAFGVRLFEKLSRAEMDERVEWALTKAALWNEV 146
Query: 197 -DSLPNGDFTVVGERGASLSGGQKARINLARAVYKNADIYLLDDPLSAVD 245
D L + G SLSGGQ+ R+ +AR + ++ LLD+P SA+D
Sbjct: 147 KDKL--------HQSGYSLSGGQQQRLCIARGIAIRPEVLLLDEPCSALD 188
>gnl|CDD|237650 PRK14265, PRK14265, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 274
Score = 55.4 bits (133), Expect = 4e-09
Identities = 52/183 (28%), Positives = 80/183 (43%), Gaps = 41/183 (22%)
Query: 105 LTLNAVSITFKPKQLACIIGAIGAGKTSLLHII--LNEL--------------------R 142
L L V + K++ IG G GK++LL +N+L +
Sbjct: 34 LALVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNIYDSQ 93
Query: 143 ISSGKVSLGGTVSYASQEPWIFAATIRQNILFGLPY-------LRRRYADVIRVCALQDD 195
I+S V L V Q P F +I +NI F P L D +R A+ ++
Sbjct: 94 INS--VKLRRQVGMVFQRPNPFPKSIYENIAFA-PRANGYKGNLDELVEDSLRRAAIWEE 150
Query: 196 F-DSLPNGDFTVVGERGASLSGGQKARINLARAVYKNADIYLLDDPLSAVDMHVGKHLFE 254
D L E+G +LSGGQ+ R+ +ARA+ D+ L+D+P SA+D + + E
Sbjct: 151 VKDKLK--------EKGTALSGGQQQRLCIARAIAMKPDVLLMDEPCSALDPISTRQVEE 202
Query: 255 DCI 257
C+
Sbjct: 203 LCL 205
>gnl|CDD|227019 COG4674, COG4674, Uncharacterized ABC-type transport system, ATPase
component [General function prediction only].
Length = 249
Score = 55.0 bits (133), Expect = 5e-09
Identities = 39/168 (23%), Positives = 66/168 (39%), Gaps = 48/168 (28%)
Query: 107 LNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSLGGTVSYAS-------- 158
LN +S + P +L +IG GAGKT+L+ +I + R G+V G
Sbjct: 21 LNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTRPQEGEVLFDGDTDLTKLPEHRIAR 80
Query: 159 -------QEPWIFAA-TIRQNI---------LFGLPYLRRRYAD---------VIRVCAL 192
Q+P +F T+R+N+ +F + R R + I +
Sbjct: 81 AGIGRKFQKPTVFENLTVRENLELALNRDKSVFASLFARLRAEERRRIDELLATIGLGDE 140
Query: 193 QDDFDSLPNGDFTVVGERGASLSGGQKARINLARAVYKNADIYLLDDP 240
+D +L LS GQK + + + ++ + LLD+P
Sbjct: 141 RDRLAAL--------------LSHGQKQWLEIGMLLAQDPKLLLLDEP 174
>gnl|CDD|172743 PRK14255, PRK14255, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 252
Score = 55.0 bits (132), Expect = 5e-09
Identities = 47/168 (27%), Positives = 75/168 (44%), Gaps = 37/168 (22%)
Query: 107 LNAVSITFKPKQLACIIGAIGAGKTSLLHII--LNELRIS---SGKVSLGGTVSYAS--- 158
L + + F ++ +IG G GK++ L + +N+L +G VSL G YA
Sbjct: 21 LKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYAPNED 80
Query: 159 ------------QEPWIFAATIRQNILFGL--------PYLRRRYADVIRVCALQDDF-D 197
Q+P F +I +N+++GL L ++ A+ D+ D
Sbjct: 81 VVQLRKQVGMVFQQPNPFPFSIYENVIYGLRLAGVKDKAVLDEAVETSLKQAAIWDEVKD 140
Query: 198 SLPNGDFTVVGERGASLSGGQKARINLARAVYKNADIYLLDDPLSAVD 245
L E SLSGGQ+ R+ +AR + D+ LLD+P SA+D
Sbjct: 141 HL--------HESALSLSGGQQQRVCIARVLAVKPDVILLDEPTSALD 180
>gnl|CDD|183226 PRK11607, potG, putrescine transporter ATP-binding subunit;
Provisional.
Length = 377
Score = 55.6 bits (134), Expect = 6e-09
Identities = 46/173 (26%), Positives = 86/173 (49%), Gaps = 35/173 (20%)
Query: 93 NVTAQWSLQNADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSLGG 152
N+T + Q+A ++ VS+T ++ ++GA G GK++LL ++ + ++G++ L G
Sbjct: 24 NLTKSFDGQHA---VDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDG 80
Query: 153 TVSYASQEPW------IFAA-------TIRQNILFGLPY-------LRRRYADVIRVCAL 192
V + P+ +F + T+ QNI FGL + R +++ + +
Sbjct: 81 -VDLSHVPPYQRPINMMFQSYALFPHMTVEQNIAFGLKQDKLPKAEIASRVNEMLGLVHM 139
Query: 193 QDDFDSLPNGDFTVVGERGASLSGGQKARINLARAVYKNADIYLLDDPLSAVD 245
Q+ P+ LSGGQ+ R+ LAR++ K + LLD+P+ A+D
Sbjct: 140 QEFAKRKPH-----------QLSGGQRQRVALARSLAKRPKLLLLDEPMGALD 181
>gnl|CDD|130252 TIGR01184, ntrCD, nitrate transport ATP-binding subunits C and D.
This model describes the ATP binding subunits of nitrate
transport in bacteria and archaea. This protein belongs
to the ATP-binding cassette (ABC) superfamily. It is
thought that the two subunits encoded by ntrC and ntrD
form the binding surface for interaction with ATP. This
model is restricted in identifying ATP binding subunit
associated with the nitrate transport. Nitrate
assimilation is aided by other proteins derived from the
operon which among others include products of ntrA - a
regulatory protein; ntrB - a hydropbobic transmembrane
permease and narB - a reductase [Transport and binding
proteins, Anions, Transport and binding proteins,
Other].
Length = 230
Score = 54.8 bits (132), Expect = 6e-09
Identities = 43/157 (27%), Positives = 72/157 (45%), Gaps = 29/157 (18%)
Query: 107 LNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSLGG----------TVSY 156
L V++T + + +IG G GK++LL++I + +SG V L G V +
Sbjct: 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQITEPGPDRMVVF 60
Query: 157 A--SQEPWIFAATIRQNILFGLPYLRRRYADVIRVCALQDDFDSLPNGDFTVVGERGAS- 213
S PW+ T+R+NI + + + R +++ +VG A+
Sbjct: 61 QNYSLLPWL---TVRENIALAVDRVLPDLSKSERRAIVEEHIA--------LVGLTEAAD 109
Query: 214 -----LSGGQKARINLARAVYKNADIYLLDDPLSAVD 245
LSGG K R+ +ARA+ + LLD+P A+D
Sbjct: 110 KRPGQLSGGMKQRVAIARALSIRPKVLLLDEPFGALD 146
>gnl|CDD|213259 cd03292, ABC_FtsE_transporter, ATP-binding cassette domain of the
cell division transporter. FtsE is a hydrophilic
nucleotide-binding protein that binds FtsX to form a
heterodimeric ATP-binding cassette (ABC)-type
transporter that associates with the bacterial inner
membrane. The FtsE/X transporter is thought to be
involved in cell division and is important for assembly
or stability of the septal ring.
Length = 214
Score = 54.3 bits (131), Expect = 6e-09
Identities = 39/177 (22%), Positives = 74/177 (41%), Gaps = 37/177 (20%)
Query: 93 NVTAQWSLQNADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSLGG 152
NVT + N L+ ++I+ + ++G GAGK++LL +I E +SG + + G
Sbjct: 5 NVTKTYP--NGTAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNG 62
Query: 153 T---------VSYASQE--------PWIFAATIRQNILFGLPY-------LRRRYADVIR 188
+ Y ++ + + +N+ F L +R+R +
Sbjct: 63 QDVSDLRGRAIPYLRRKIGVVFQDFRLLPDRNVYENVAFALEVTGVPPREIRKRVPAALE 122
Query: 189 VCALQDDFDSLPNGDFTVVGERGASLSGGQKARINLARAVYKNADIYLLDDPLSAVD 245
+ L +LP LSGG++ R+ +ARA+ + I + D+P +D
Sbjct: 123 LVGLSHKHRALPAE-----------LSGGEQQRVAIARAIVNSPTILIADEPTGNLD 168
>gnl|CDD|184582 PRK14236, PRK14236, phosphate transporter ATP-binding protein;
Provisional.
Length = 272
Score = 54.6 bits (132), Expect = 8e-09
Identities = 50/169 (29%), Positives = 74/169 (43%), Gaps = 39/169 (23%)
Query: 107 LNAVSITFKPKQLACIIGAIGAGKTSLLHII--LNEL----RISSGKVSLGGTVSYAS-- 158
L +S+ ++ IG G GK++LL +N+L RI G++ L G Y
Sbjct: 41 LFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIE-GEIRLDGQNIYDKKV 99
Query: 159 -------------QEPWIFAATIRQNILFGLPYL---RRRYADVI-----RVCALQDDF- 196
Q P F +I +N+++GL RR D R AL D+
Sbjct: 100 DVAELRRRVGMVFQRPNPFPKSIYENVVYGLRLQGINNRRVLDEAVERSLRGAALWDEVK 159
Query: 197 DSLPNGDFTVVGERGASLSGGQKARINLARAVYKNADIYLLDDPLSAVD 245
D L E LSGGQ+ R+ +ARA+ ++ LLD+P SA+D
Sbjct: 160 DRL--------HENAFGLSGGQQQRLVIARAIAIEPEVLLLDEPTSALD 200
>gnl|CDD|213198 cd03231, ABC_CcmA_heme_exporter, Cytochrome c biogenesis
ATP-binding export protein. CcmA, the ATP-binding
component of the bacterial CcmAB transporter. The CCM
family is involved in bacterial cytochrome c biogenesis.
Cytochrome c maturation in E. coli requires the ccm
operon, which encodes eight membrane proteins
(CcmABCDEFGH). CcmE is a periplasmic heme chaperon that
binds heme covalently and transfers it onto
apocytochrome c in the presence of CcmF, CcmG, and CcmH.
The CcmAB proteins represent an ABC transporter and the
CcmCD proteins participate in heme transfer to CcmE.
Length = 201
Score = 53.7 bits (129), Expect = 8e-09
Identities = 39/146 (26%), Positives = 66/146 (45%), Gaps = 11/146 (7%)
Query: 107 LNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSLGGTV------SYASQE 160
+ +S T + + G G+GKT+LL I+ +G+V L G S A
Sbjct: 16 FSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGPLDFQRDSIARGL 75
Query: 161 PWIFAATIRQNILFGLPYLRRRYADVIRVCALQDDFDSLPNGDFTVVGERG-ASLSGGQK 219
++ A + L L LR +AD + + ++L +R A LS GQ+
Sbjct: 76 LYLGHAPGIKTTLSVLENLRFWHAD----HSDEQVEEALARVGLNGFEDRPVAQLSAGQQ 131
Query: 220 ARINLARAVYKNADIYLLDDPLSAVD 245
R+ LAR + +++LD+P +A+D
Sbjct: 132 RRVALARLLLSGRPLWILDEPTTALD 157
>gnl|CDD|184588 PRK14243, PRK14243, phosphate transporter ATP-binding protein;
Provisional.
Length = 264
Score = 54.4 bits (131), Expect = 9e-09
Identities = 50/170 (29%), Positives = 75/170 (44%), Gaps = 39/170 (22%)
Query: 105 LTLNAVSITFKPKQLACIIGAIGAGKTSLLHII--LNELRISS----GKVSLGGTVSYAS 158
L + V + Q+ IG G GK+++L LN+L I GKV+ G YA
Sbjct: 24 LAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDL-IPGFRVEGKVTFHGKNLYAP 82
Query: 159 ---------------QEPWIFAATIRQNILFGLPYLRRRYADV-------IRVCALQDDF 196
Q+P F +I NI +G + D+ +R AL D+
Sbjct: 83 DVDPVEVRRRIGMVFQKPNPFPKSIYDNIAYG-ARINGYKGDMDELVERSLRQAALWDEV 141
Query: 197 -DSLPNGDFTVVGERGASLSGGQKARINLARAVYKNADIYLLDDPLSAVD 245
D L + G SLSGGQ+ R+ +ARA+ ++ L+D+P SA+D
Sbjct: 142 KDKLK--------QSGLSLSGGQQQRLCIARAIAVQPEVILMDEPCSALD 183
>gnl|CDD|184586 PRK14240, PRK14240, phosphate transporter ATP-binding protein;
Provisional.
Length = 250
Score = 54.3 bits (131), Expect = 9e-09
Identities = 50/185 (27%), Positives = 85/185 (45%), Gaps = 49/185 (26%)
Query: 99 SLQNADL------TLNAVSITFKPKQLACIIGAIGAGKTSLLHII--LNEL----RISSG 146
S+++ DL L +++ + Q+ +IG G GK++ L + +N+L +I G
Sbjct: 5 SVKDLDLFYGDFQALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIE-G 63
Query: 147 KVSLGGTVSYAS---------------QEPWIFAATIRQNILFGLPYLR----RRYADVI 187
+V L G Y S Q+P F +I N+ +G P ++ D I
Sbjct: 64 EVLLDGQDIYKSDIDVNQLRKRVGMVFQQPNPFPMSIYDNVAYG-PRTHGIKDKKKLDEI 122
Query: 188 -----RVCALQDDF-DSLPNGDFTVVGERGA-SLSGGQKARINLARAVYKNADIYLLDDP 240
+ AL D+ D L ++ A LSGGQ+ R+ +ARA+ ++ L+D+P
Sbjct: 123 VEKSLKGAALWDEVKDRL---------KKSALGLSGGQQQRLCIARALAVEPEVLLMDEP 173
Query: 241 LSAVD 245
SA+D
Sbjct: 174 TSALD 178
>gnl|CDD|224057 COG1134, TagH, ABC-type polysaccharide/polyol phosphate transport
system, ATPase component [Carbohydrate transport and
metabolism / Cell envelope biogenesis, outer membrane].
Length = 249
Score = 54.2 bits (131), Expect = 9e-09
Identities = 42/156 (26%), Positives = 65/156 (41%), Gaps = 32/156 (20%)
Query: 107 LNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSLGGTVSYASQEPWIFA- 165
L +S + IIG GAGK++LL +I + +SGKV + G V+ +
Sbjct: 43 LKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYKPTSGKVKVTGKVA------PLIEL 96
Query: 166 -------ATIRQNILF-----GLPY--LRRRYADVIRVCALQDDFDSLPNGDFTVVGERG 211
T R+NI GL + + ++I +F L GDF +
Sbjct: 97 GAGFDPELTGRENIYLRGLILGLTRKEIDEKVDEII-------EFAEL--GDFIDQPVK- 146
Query: 212 ASLSGGQKARINLARAVYKNADIYLLDDPLSAVDMH 247
+ S G AR+ + A + DI LLD+ L+ D
Sbjct: 147 -TYSSGMYARLAFSVATHVEPDILLLDEVLAVGDAA 181
>gnl|CDD|213180 cd03213, ABCG_EPDR, Eye pigment and drug resistance transporter
subfamily G of the ATP-binding cassette superfamily.
ABCG transporters are involved in eye pigment (EP)
precursor transport, regulation of lipid-trafficking
mechanisms, and pleiotropic drug resistance (DR). DR is
a well-described phenomenon occurring in fungi and
shares several similarities with processes in bacteria
and higher eukaryotes. Compared to other members of the
ABC transporter subfamilies, the ABCG transporter family
is composed of proteins that have an ATP-binding
cassette domain at the N-terminus and a TM
(transmembrane) domain at the C-terminus.
Length = 194
Score = 53.7 bits (130), Expect = 9e-09
Identities = 41/160 (25%), Positives = 64/160 (40%), Gaps = 33/160 (20%)
Query: 93 NVTAQWSLQNADLT-LNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELR--ISSGKVS 149
VT + S + L VS KP +L I+G GAGK++LL+ + SG+V
Sbjct: 10 TVTVKSSPSKSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLGVSGEVL 69
Query: 150 LGGTVSYASQEPWIFAATIRQNILFGLPYLRRR----YADVIRVCALQDDFDSLPNGDFT 205
+ G I + +IL P L R +A +R
Sbjct: 70 INGRPLDKRSFRKIIGYVPQDDILH--PTLTVRETLMFAAKLR----------------- 110
Query: 206 VVGERGASLSGGQKARINLARAVYKNADIYLLDDPLSAVD 245
LSGG++ R+++A + N + LD+P S +D
Sbjct: 111 -------GLSGGERKRVSIALELVSNPSLLFLDEPTSGLD 143
>gnl|CDD|172741 PRK14253, PRK14253, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 249
Score = 54.1 bits (130), Expect = 1e-08
Identities = 46/168 (27%), Positives = 80/168 (47%), Gaps = 38/168 (22%)
Query: 107 LNAVSITFKPKQLACIIGAIGAGKTSLLHII--LNEL----RISSGKVSLGGTVSYAS-- 158
L ++++ +Q+ +IG G GK++LL + +N+L +I+ GK+++ G Y +
Sbjct: 19 LKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKIT-GKLTMDGEDIYGNID 77
Query: 159 ------------QEPWIFAATIRQNILFGL--------PYLRRRYADVIRVCALQDDF-D 197
Q+P F +I +N+ +GL L +R AL D+ D
Sbjct: 78 VADLRIKVGMVFQKPNPFPMSIYENVAYGLRAQGIKDKKVLDEVVERSLRGAALWDEVKD 137
Query: 198 SLPNGDFTVVGERGASLSGGQKARINLARAVYKNADIYLLDDPLSAVD 245
L + F LSGGQ+ R+ +AR + D+ L+D+P SA+D
Sbjct: 138 RLKSHAF--------GLSGGQQQRLCIARTIAMEPDVILMDEPTSALD 177
>gnl|CDD|226646 COG4178, COG4178, ABC-type uncharacterized transport system,
permease and ATPase components [General function
prediction only].
Length = 604
Score = 55.0 bits (133), Expect = 1e-08
Identities = 41/181 (22%), Positives = 76/181 (41%), Gaps = 16/181 (8%)
Query: 72 EHEPRKINSVHSNGKGHVSLDNVTAQWSLQNADLTLNAVSITFKPKQLACIIGAIGAGKT 131
+ N ++L+N++ + L+ ++ +P + I G GAGKT
Sbjct: 376 PARTGRRIDFDDNADHGITLENLSL--RTPDGQTLLSELNFEVRPGERLLITGESGAGKT 433
Query: 132 SLLHIILNEL-RISSGKVSL--GGTVSYASQEPWIFAATIRQNILFGLPYLRRRYADVIR 188
SLL + L SG++S+ + + Q P++ T+R+ + + A+++
Sbjct: 434 SLLRAL-AGLWPWGSGRISMPADSALLFLPQRPYLPQGTLREALCYPNAAPDFSDAELVA 492
Query: 189 V---CALQDDFDSLP-NGDFTVVGERGASLSGGQKARINLARAVYKNADIYLLDDPLSAV 244
V L D + L + V LSGG++ R+ AR + LD+ SA+
Sbjct: 493 VLHKVGLGDLAERLDEEDRWDRV------LSGGEQQRLAFARLLLHKPKWVFLDEATSAL 546
Query: 245 D 245
D
Sbjct: 547 D 547
>gnl|CDD|224026 COG1101, PhnK, ABC-type uncharacterized transport system, ATPase
component [General function prediction only].
Length = 263
Score = 53.9 bits (130), Expect = 1e-08
Identities = 43/164 (26%), Positives = 70/164 (42%), Gaps = 30/164 (18%)
Query: 107 LNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSLGG-------------T 153
LN +S+ +IG+ GAGK++LL+ I +L+ +SG++ + G
Sbjct: 22 LNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKPTSGQILIDGVDVTKKSVAKRANL 81
Query: 154 VSYASQEPWIFAA---TIRQNIL--------FGL-PYLRRRYADVIRVCALQDDFDSLPN 201
++ Q+P A TI +N+ GL L R R + L
Sbjct: 82 LARVFQDPLAGTAPELTIEENLALAESRGKKRGLSSALNERRRSSFR-----ERLARLGL 136
Query: 202 GDFTVVGERGASLSGGQKARINLARAVYKNADIYLLDDPLSAVD 245
G + +R LSGGQ+ ++L A I LLD+ +A+D
Sbjct: 137 GLENRLSDRIGLLSGGQRQALSLLMATLHPPKILLLDEHTAALD 180
>gnl|CDD|172740 PRK14252, PRK14252, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 265
Score = 53.9 bits (129), Expect = 1e-08
Identities = 47/172 (27%), Positives = 75/172 (43%), Gaps = 39/172 (22%)
Query: 105 LTLNAVSITFKPKQLACIIGAIGAGKTSLLH-----------------IIL-----NELR 142
L +++ KQ+ +IG G GK++ L IIL N L
Sbjct: 30 QALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHPDNVNILS 89
Query: 143 ISSGKVSLGGTVSYASQEPWIFAATIRQNILFGL--------PYLRRRYADVIRVCALQD 194
+ + +S Q+P F +I +N+ +GL L R + +R AL D
Sbjct: 90 PEVDPIEVRMRISMVFQKPNPFPKSIFENVAYGLRIRGVKRRSILEERVENALRNAALWD 149
Query: 195 DF-DSLPNGDFTVVGERGASLSGGQKARINLARAVYKNADIYLLDDPLSAVD 245
+ D L G+ +LSGGQ+ R+ +ARA+ + +I L D+P SA+D
Sbjct: 150 EVKDRL--------GDLAFNLSGGQQQRLCIARALATDPEILLFDEPTSALD 193
>gnl|CDD|224053 COG1129, MglA, ABC-type sugar transport system, ATPase component
[Carbohydrate transport and metabolism].
Length = 500
Score = 54.4 bits (132), Expect = 2e-08
Identities = 43/181 (23%), Positives = 80/181 (44%), Gaps = 44/181 (24%)
Query: 100 LQNADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSLGG-TVSYAS 158
L LT+ + ++G GAGK++L+ I+ SG++ + G V+++S
Sbjct: 24 LDGVSLTVRPGEVH-------ALLGENGAGKSTLMKILSGVYPPDSGEILIDGKPVAFSS 76
Query: 159 -------------QEPWIFAA-TIRQNILFG-LP----------YLRRRYADVIRVCALQ 193
QE + ++ +NI G P +RRR +++ L
Sbjct: 77 PRDALAAGIATVHQELSLVPNLSVAENIFLGREPTRRFGLIDRKAMRRRARELLARLGLD 136
Query: 194 DDFDSLPNGDFTVVGERGASLSGGQKARINLARAVYKNADIYLLDDPLSAVDMHVGKHLF 253
D D T+VG+ LS Q+ + +ARA+ +A + +LD+P +A+ + + LF
Sbjct: 137 IDPD-------TLVGD----LSIAQRQMVEIARALSFDARVLILDEPTAALTVKETERLF 185
Query: 254 E 254
+
Sbjct: 186 D 186
Score = 44.0 bits (105), Expect = 4e-05
Identities = 39/185 (21%), Positives = 65/185 (35%), Gaps = 43/185 (23%)
Query: 89 VSLDNVTAQWSLQNADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKV 148
+ + N++ +++ T+ A I I G +GAG+T L + SSG++
Sbjct: 264 LEVRNLSGGGKVRDVSFTVRAGEI-------LGIAGLVGAGRTELARALFGARPASSGEI 316
Query: 149 SLGG-TVSYASQEPWIFA-----------------ATIRQNILF--------GLPYLRRR 182
L G V S I A +I +NI RR+
Sbjct: 317 LLDGKPVRIRSPRDAIKAGIAYVPEDRKSEGLVLDMSIAENITLASLRRFSRRGLIDRRK 376
Query: 183 YADVIRVCALQDDFDSLPNGDFTVVGERGASLSGG--QKARINLARAVYKNADIYLLDDP 240
+ +G +LSGG QK + LAR + + + +LD+P
Sbjct: 377 ERALAE--RYIRRLRIKTPSPEQPIG----TLSGGNQQK--VVLARWLATDPKVLILDEP 428
Query: 241 LSAVD 245
+D
Sbjct: 429 TRGID 433
>gnl|CDD|184597 PRK14270, PRK14270, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 251
Score = 53.4 bits (128), Expect = 2e-08
Identities = 45/170 (26%), Positives = 75/170 (44%), Gaps = 41/170 (24%)
Query: 107 LNAVSITFKPKQLACIIGAIGAGKTSLLHII--LNEL----RISSGKVSLGG-------- 152
LN +++ ++ +IG G GK++ L + +N+L +I G+V L G
Sbjct: 20 LNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIE-GEVLLDGKNIYDKDV 78
Query: 153 -------TVSYASQEPWIFAATIRQNILFGLPYLR----RRYADVI-----RVCALQDDF 196
V Q+P F +I N+ +G P + ++ D I + AL D+
Sbjct: 79 DVVELRKRVGMVFQKPNPFPMSIYDNVAYG-PRIHGIKDKKELDKIVEWALKKAALWDEV 137
Query: 197 -DSLPNGDFTVVGERGASLSGGQKARINLARAVYKNADIYLLDDPLSAVD 245
D L LSGGQ+ R+ +AR + D+ L+D+P SA+D
Sbjct: 138 KDDLKKSAL--------KLSGGQQQRLCIARTIAVKPDVILMDEPTSALD 179
>gnl|CDD|213233 cd03266, ABC_NatA_sodium_exporter, ATP-binding cassette domain of
the Na+ transporter. NatA is the ATPase component of a
bacterial ABC-type Na+ transport system called NatAB,
which catalyzes ATP-dependent electrogenic Na+ extrusion
without mechanically coupled proton or K+ uptake. NatB
possess six putative membrane spanning regions at its
C-terminus. In B. subtilis, NatAB is inducible by agents
such as ethanol and protonophores, which lower the
proton-motive force across the membrane. The closest
sequence similarity to NatA is exhibited by DrrA of the
two-component daunorubicin- and doxorubicin-efflux
system. Hence, the functional NatAB is presumably
assembled with two copies of a single ATP-binding
protein and a single integral membrane protein.
Length = 218
Score = 52.8 bits (127), Expect = 2e-08
Identities = 40/167 (23%), Positives = 73/167 (43%), Gaps = 29/167 (17%)
Query: 107 LNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSLGGTVSYASQEPWIFAA 166
++ VS T KP ++ ++G GAGKT+ L ++ L +G ++ G +EP A
Sbjct: 21 VDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFD--VVKEP--AEA 76
Query: 167 -----------------TIRQNILF--GLPYLRRRYADVIRVCALQDDFDSLPNGDFTVV 207
T R+N+ + GL L+ L++ D L + +
Sbjct: 77 RRRLGFVSDSTGLYDRLTARENLEYFAGLYGLKGDELTA----RLEELADRLGMEEL--L 130
Query: 208 GERGASLSGGQKARINLARAVYKNADIYLLDDPLSAVDMHVGKHLFE 254
R S G + ++ +ARA+ + + LLD+P + +D+ + L E
Sbjct: 131 DRRVGGFSTGMRQKVAIARALVHDPPVLLLDEPTTGLDVMATRALRE 177
>gnl|CDD|224052 COG1127, Ttg2A, ABC-type transport system involved in resistance to
organic solvents, ATPase component [Secondary
metabolites biosynthesis, transport, and catabolism].
Length = 263
Score = 53.0 bits (128), Expect = 3e-08
Identities = 42/167 (25%), Positives = 67/167 (40%), Gaps = 41/167 (24%)
Query: 107 LNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSLGGTVSYASQEPWIFAA 166
L+ V + ++ I+G G+GK++LL +IL LR G++ I
Sbjct: 24 LDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEI-------------LIDGE 70
Query: 167 TIRQNILFGLPYLRRRYADVIRVCALQDDFDSLPNGDFTV-------------------- 206
I Q L +R+R + + AL N F +
Sbjct: 71 DIPQLSEEELYEIRKRMGVLFQQGALFSSLTVFENVAFPLREHTKLPESLIRELVLMKLE 130
Query: 207 -VGERG-------ASLSGGQKARINLARAVYKNADIYLLDDPLSAVD 245
VG RG + LSGG + R+ LARA+ + ++ LD+P S +D
Sbjct: 131 LVGLRGAAADLYPSELSGGMRKRVALARAIALDPELLFLDEPTSGLD 177
>gnl|CDD|132050 TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine ABC transporter,
ATP-binding protein. Members of this family are the
ATP-binding protein of a conserved four gene ABC
transporter operon found next to ectoine unilization
operons and ectoine biosynthesis operons. Ectoine is a
compatible solute that protects enzymes from high
osmolarity. It is released by some species in response
to hypoosmotic shock, and it is taken up by a number of
bacteria as a compatible solute or for consumption. This
family shows strong sequence similiarity to a number of
amino acid ABC transporter ATP-binding proteins.
Length = 252
Score = 52.9 bits (127), Expect = 3e-08
Identities = 45/193 (23%), Positives = 78/193 (40%), Gaps = 51/193 (26%)
Query: 89 VSLDNVTAQWSLQNADLT-LNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGK 147
V +VT ++ LT L+ ++ + + +IG G+GK+++L I++ I G+
Sbjct: 1 VRFSDVTKRF----GILTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPIDEGQ 56
Query: 148 VSLGGTVSYASQE---PWIFA-----ATIRQNI-----LFGL-------------PYL-- 179
+ + G Y P + A +R I F L P L
Sbjct: 57 IQVEGEQLYHMPGRNGPLVPADEKHLRQMRNKIGMVFQSFNLFPHKTVLDNVTEAPVLVL 116
Query: 180 -------RRRYADVIRVCALQDDFDSLPNGDFTVVGERGASLSGGQKARINLARAVYKNA 232
+R +++ + L D D +P A LSGGQ+ R+ +ARA+
Sbjct: 117 GMARAEAEKRAMELLDMVGLADKADHMP-----------AQLSGGQQQRVAIARALAMRP 165
Query: 233 DIYLLDDPLSAVD 245
+ L D+ SA+D
Sbjct: 166 KVMLFDEVTSALD 178
>gnl|CDD|184594 PRK14264, PRK14264, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 305
Score = 52.9 bits (127), Expect = 3e-08
Identities = 51/188 (27%), Positives = 77/188 (40%), Gaps = 59/188 (31%)
Query: 104 DLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNEL--RISS----GKVSLGGTVSYA 157
D L VS+ K + +IG G GK++ L LN + RI + G V L G Y
Sbjct: 58 DHALKGVSMDIPEKSVTALIGPSGCGKSTFLRC-LNRMNDRIKAARIDGSVELDGQDIYQ 116
Query: 158 S---------------QEPWIFAATIRQNILFGLPYLRRRYADV---------------- 186
Q P F +IR+NI +G P R++ D+
Sbjct: 117 DGVNLVELRKRVGMVFQSPNPFPKSIRENISYG-P---RKHGDINTGLLARLLGRDDKDA 172
Query: 187 --------IRVCALQDDF-DSLPNGDFTVVGERGASLSGGQKARINLARAVYKNADIYLL 237
+R AL D+ D L + LSGGQ+ R+ +AR + + ++ L+
Sbjct: 173 EDELVERSLRQAALWDEVNDRL--------DDNALGLSGGQQQRLCIARCLAVDPEVILM 224
Query: 238 DDPLSAVD 245
D+P SA+D
Sbjct: 225 DEPASALD 232
>gnl|CDD|172750 PRK14262, PRK14262, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 250
Score = 52.6 bits (126), Expect = 4e-08
Identities = 49/168 (29%), Positives = 74/168 (44%), Gaps = 37/168 (22%)
Query: 107 LNAVSITFKPKQLACIIGAIGAGKTSLLHII--LNE----LRISSGKVSLGGT------- 153
+ V++ Q+ IIG G GKT+LL I +N+ R+ GK+ G
Sbjct: 19 VKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVE-GKIYFKGQDIYDPQL 77
Query: 154 --------VSYASQEPWIFAATIRQNILFGLPY--------LRRRYADVIRVCALQDDFD 197
V Q+P F +I N+ FG L R + ++ AL D+
Sbjct: 78 DVTEYRKKVGMVFQKPTPFPMSIYDNVAFGPRIHGVKSKHKLDRIVEESLKKAALWDEVK 137
Query: 198 SLPNGDFTVVGERGASLSGGQKARINLARAVYKNADIYLLDDPLSAVD 245
S N + G LSGGQ+ R+ +ARA+ ++ LLD+P SA+D
Sbjct: 138 SELN-------KPGTRLSGGQQQRLCIARALAVEPEVILLDEPTSALD 178
>gnl|CDD|172739 PRK14251, PRK14251, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 251
Score = 52.3 bits (125), Expect = 4e-08
Identities = 48/189 (25%), Positives = 86/189 (45%), Gaps = 51/189 (26%)
Query: 88 HVSLDNVTAQWSLQNADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHII------LNEL 141
H+S N A L+ +S+ F+ K+L +IG G GK++ L + + +
Sbjct: 11 HLSYGNYEA----------LHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENI 60
Query: 142 RISSGKVSLGGTVSYAS---------------QEPWIFAATIRQNILFGL--------PY 178
+I+ G++ G Y S Q+P F ++ N+ +GL
Sbjct: 61 KIT-GEIKFEGQNIYGSKMDLVELRKEVGMVFQQPTPFPFSVYDNVAYGLKIAGVKDKEL 119
Query: 179 LRRRYADVIRVCAL-QDDFDSLPNGDFTVVGERGA-SLSGGQKARINLARAVYKNADIYL 236
+ +R + ++ A+ ++ D+L +R A + SGGQ+ RI +ARA+ + L
Sbjct: 120 IDQRVEESLKQAAIWKETKDNL---------DRNAQAFSGGQQQRICIARALAVRPKVVL 170
Query: 237 LDDPLSAVD 245
LD+P SA+D
Sbjct: 171 LDEPTSALD 179
>gnl|CDD|184204 PRK13645, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 289
Score = 52.3 bits (125), Expect = 5e-08
Identities = 44/182 (24%), Positives = 76/182 (41%), Gaps = 27/182 (14%)
Query: 87 GHVSLDNVTAQWSLQNAD--LTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRIS 144
+ LDNV+ ++ + LN S+TFK ++ C+IG G+GK++++ + +
Sbjct: 5 KDIILDNVSYTYAKKTPFEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISE 64
Query: 145 SGKVSLG---------------------GTVSYASQEPWIFAATIRQNILFGLPYLRRRY 183
+G+ +G G V + E +F TI ++I FG L
Sbjct: 65 TGQTIVGDYAIPANLKKIKEVKRLRKEIGLV-FQFPEYQLFQETIEKDIAFGPVNLGENK 123
Query: 184 ADVIRVCALQDDFDSLPNGDFTVVGERGASLSGGQKARINLARAVYKNADIYLLDDPLSA 243
+ + LP V LSGGQK R+ LA + + + +LD+P
Sbjct: 124 QEAYKKVPELLKLVQLPE---DYVKRSPFELSGGQKRRVALAGIIAMDGNTLVLDEPTGG 180
Query: 244 VD 245
+D
Sbjct: 181 LD 182
>gnl|CDD|233305 TIGR01189, ccmA, heme ABC exporter, ATP-binding protein CcmA. This
model describes the cyt c biogenesis protein encoded by
ccmA in bacteria. An exception is, an arabidopsis
protein. Quite likely this is encoded by an organelle.
Bacterial c-type cytocromes are located on the
periplasmic side of the cytoplasmic membrane. Several
gene products encoded in a locus designated as 'ccm' are
implicated in the transport and assembly of the
functional cytochrome C. This cluster includes genes:
ccmA;B;C;D;E;F;G and H. The posttranslational pathway
includes the transport of heme moiety, the secretion of
the apoprotein and the covalent attachment of the heme
with the apoprotein. The proteins ccmA and B represent
an ABC transporter; ccmC and D participate in heme
transfer to ccmE, which function as a periplasmic heme
chaperone. The presence of ccmF, G and H is suggested to
be obligatory for the final functional assembly of
cytochrome c [Protein fate, Protein and peptide
secretion and trafficking, Transport and binding
proteins, Other].
Length = 198
Score = 51.6 bits (124), Expect = 5e-08
Identities = 42/175 (24%), Positives = 66/175 (37%), Gaps = 36/175 (20%)
Query: 90 SLDNVTAQWSLQNADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVS 149
+ N+ + + +S T + + G G GKT+LL I+ LR SG+V
Sbjct: 2 AARNLACS---RGERMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVR 58
Query: 150 LGGTVS------------YASQEPWIFAA-TIRQNILFGLPYLRRRYADVIRVCALQDDF 196
GT Y P + + +N+ F +
Sbjct: 59 WNGTALAEQRDEPHRNILYLGHLPGLKPELSALENLHFWAAIHGGAQRTI---------E 109
Query: 197 DSLPNGDFTVVGERG------ASLSGGQKARINLARAVYKNADIYLLDDPLSAVD 245
D+L VG G A LS GQ+ R+ LAR A +++LD+P +A+D
Sbjct: 110 DAL-----AAVGLTGFEDLPAAQLSAGQQRRLALARLWLSRAPLWILDEPTTALD 159
>gnl|CDD|234200 TIGR03411, urea_trans_UrtD, urea ABC transporter, ATP-binding
protein UrtD. Members of this protein family are ABC
transporter ATP-binding subunits associated with urea
transport and metabolism. This protein is found in a
conserved five-gene transport operon typically found
adjacent to urease genes. It was shown in Cyanobacteria
that disruption leads to the loss of high-affinity urea
transport activity [Transport and binding proteins,
Amino acids, peptides and amines].
Length = 242
Score = 52.2 bits (126), Expect = 5e-08
Identities = 46/183 (25%), Positives = 72/183 (39%), Gaps = 51/183 (27%)
Query: 88 HVSLDNVTAQWSLQNADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGK 147
VS D A LN +S+ P +L IIG GAGKT+++ +I + R G
Sbjct: 9 SVSFDGFKA----------LNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPDEGS 58
Query: 148 VSLGGT--------------VSYASQEPWIFAA-TIRQNI---------LFGLPYLRR-- 181
V GGT + Q+P +F T+ +N+ +F + R
Sbjct: 59 VLFGGTDLTGLPEHQIARAGIGRKFQKPTVFENLTVFENLELALPRDKSVFASLFFRLSA 118
Query: 182 ----RYADVIRVCALQDDFDSLPNGDFTVVGERGASLSGGQKARINLARAVYKNADIYLL 237
R +V+ L D+ D L LS GQK + + + ++ + LL
Sbjct: 119 EEKDRIEEVLETIGLADEADRL-----------AGLLSHGQKQWLEIGMLLMQDPKLLLL 167
Query: 238 DDP 240
D+P
Sbjct: 168 DEP 170
>gnl|CDD|188353 TIGR03608, L_ocin_972_ABC, putative bacteriocin export ABC
transporter, lactococcin 972 group. A gene pair with a
fairly wide distribution consists of a polypeptide
related to the lactococcin 972 (see TIGR01653) and
multiple-membrane-spanning putative immunity protein
(see TIGR01654). This model represents a small clade
within the ABC transporters that regularly are found
adjacent to these bacteriocin system gene pairs and are
likely serve as export proteins [Cellular processes,
Toxin production and resistance, Transport and binding
proteins, Unknown substrate].
Length = 206
Score = 51.5 bits (124), Expect = 5e-08
Identities = 45/167 (26%), Positives = 74/167 (44%), Gaps = 40/167 (23%)
Query: 107 LNAVSITFKPKQLACIIGAIGAGKTSLLHII-LNELRISSGKVSLGG--TVSYASQEPWI 163
L+ +++T + ++ IIG G+GK++LL+II L E + SG+V L G T S++
Sbjct: 14 LDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLE-KFDSGQVYLNGQETPPLNSKKASK 72
Query: 164 F----------------AATIRQNILFGLPYLRRRYADVIR--VCALQDDFDSLPNGDFT 205
F T+ +N+ GL Y + + AL+
Sbjct: 73 FRREKLGYLFQNFALIENETVEENLDLGLKYKKLSKKEKREKKKEALEK----------- 121
Query: 206 VVGERGA------SLSGGQKARINLARAVYKNADIYLLDDPLSAVDM 246
VG LSGG++ R+ LARA+ K + L D+P ++D
Sbjct: 122 -VGLNLKLKQKIYELSGGEQQRVALARAILKPPPLILADEPTGSLDP 167
>gnl|CDD|163585 TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC transporter,
ATP-binding protein. This small clade of ABC-type
transporter ATP-binding protein components is found as a
three gene cassette along with a periplasmic
substrate-binding protein (TIGR03868) and a permease
(TIGR03869). The organisms containing this cassette are
all Actinobacteria and all contain numerous genes
requiring the coenzyme F420. This model was defined
based on five such organisms, four of which are lacking
all F420 biosynthetic capability save the final
side-chain polyglutamate attachment step (via the gene
cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and
marine actinobacterium PHSC20C1 this cassette is in an
apparent operon with the cofE gene and, in PHSC20C1,
also with a F420-dependent glucose-6-phosphate
dehydrogenase (TIGR03554). Based on these observations
we propose that this ATP-binding protein is a component
of an F420-0 (that is, F420 lacking only the
polyglutamate tail) transporter.
Length = 256
Score = 51.7 bits (124), Expect = 7e-08
Identities = 40/163 (24%), Positives = 75/163 (46%), Gaps = 28/163 (17%)
Query: 105 LTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSLGGT----------- 153
L ++ V +T P L ++G G+GK++LL ++ LR +G V L G
Sbjct: 15 LIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDLAGVDLHGLSRRARA 74
Query: 154 --VSYASQE-PWIFAATIRQNILFG-LPYLRRRYAD------VIRVCALQDDFDSLPNGD 203
V+ Q+ T+R + G +P+ D V+ + + L + D
Sbjct: 75 RRVALVEQDSDTAVPLTVRDVVALGRIPHRSLWAGDSPHDAAVVDRALARTELSHLADRD 134
Query: 204 FTVVGERGASLSGGQKARINLARAVYKNADIYLLDDPLSAVDM 246
+ +LSGG++ R+++ARA+ + + LLD+P + +D+
Sbjct: 135 MS-------TLSGGERQRVHVARALAQEPKLLLLDEPTNHLDV 170
>gnl|CDD|184590 PRK14249, PRK14249, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 251
Score = 51.6 bits (123), Expect = 8e-08
Identities = 48/168 (28%), Positives = 76/168 (45%), Gaps = 37/168 (22%)
Query: 107 LNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGK------------------- 147
L +++ F +Q+ IIG G GK++LL + I SG
Sbjct: 20 LKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDNENIYSPNLD 79
Query: 148 -VSLGGTVSYASQEPWIFAATIRQNILFGLPYL----RRRYADVI----RVCALQDDF-D 197
V+L V Q+P F +I N+ FG L + R +V+ R AL D+ D
Sbjct: 80 VVNLRKRVGMVFQQPNPFPKSIFDNVAFGPRMLGTTAQSRLDEVVEKSLRQAALWDEVKD 139
Query: 198 SLPNGDFTVVGERGASLSGGQKARINLARAVYKNADIYLLDDPLSAVD 245
+L + G +LSGGQ+ R+ +AR + ++ L+D+P SA+D
Sbjct: 140 NL--------HKSGLALSGGQQQRLCIARVLAIEPEVILMDEPCSALD 179
>gnl|CDD|185336 PRK15439, PRK15439, autoinducer 2 ABC transporter ATP-binding
protein LsrA; Provisional.
Length = 510
Score = 52.4 bits (126), Expect = 8e-08
Identities = 38/162 (23%), Positives = 75/162 (46%), Gaps = 23/162 (14%)
Query: 107 LNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSLGGT-VSYAS------- 158
L + T ++ ++G GAGK++L+ II + SG + +GG + +
Sbjct: 27 LKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTLEIGGNPCARLTPAKAHQL 86
Query: 159 ------QEPWIFAA-TIRQNILFGLPYLRRRYADVIRVCALQDDFDSLPNGDFTVVGERG 211
QEP +F ++++NILFGLP +R A + ++ L + D +
Sbjct: 87 GIYLVPQEPLLFPNLSVKENILFGLP---KRQASMQKMKQLLAALGCQLDLDSS-----A 138
Query: 212 ASLSGGQKARINLARAVYKNADIYLLDDPLSAVDMHVGKHLF 253
SL + + + R + +++ I +LD+P +++ + LF
Sbjct: 139 GSLEVADRQIVEILRGLMRDSRILILDEPTASLTPAETERLF 180
>gnl|CDD|237652 PRK14275, PRK14275, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 286
Score = 51.8 bits (124), Expect = 8e-08
Identities = 58/201 (28%), Positives = 89/201 (44%), Gaps = 42/201 (20%)
Query: 75 PRKINSVHSNGKGHVSLDNVTAQWSLQNADLTLNAVSITFKPKQLACIIGAIGAGKTSLL 134
P + V GK HV N + + A +NA ++ K + IIG G GK++ L
Sbjct: 26 PPERKKVSGGGKPHVVAKNFSIYYGEFEAVKKVNADILS---KYVTAIIGPSGCGKSTFL 82
Query: 135 HII--LNELRIS---SGKVSLGGTVSYAS---------------QEPWIFAATIRQNILF 174
I +N+L S +G + G Y Q+P F +I NI +
Sbjct: 83 RAINRMNDLIPSCHTTGALMFDGEDIYGKFTDEVLLRKKIGMVFQKPNPFPKSIFDNIAY 142
Query: 175 GLPYL-----RRRYADVI----RVCALQDDF-DSLPNGDFTVVGERGASLSGGQKARINL 224
G P L +++ +++ R AL D+ D L D +G LSGGQ+ R+ +
Sbjct: 143 G-PRLHGINDKKQLEEIVEKSLRKAALWDEVSDRL---DKNALG-----LSGGQQQRLCV 193
Query: 225 ARAVYKNADIYLLDDPLSAVD 245
AR + +I LLD+P SA+D
Sbjct: 194 ARTLAVEPEILLLDEPTSALD 214
>gnl|CDD|227118 COG4778, PhnL, ABC-type phosphonate transport system, ATPase
component [Inorganic ion transport and metabolism].
Length = 235
Score = 51.3 bits (123), Expect = 8e-08
Identities = 42/163 (25%), Positives = 67/163 (41%), Gaps = 29/163 (17%)
Query: 107 LNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSL---GGTVSYASQEPWI 163
L VS++ + + G G+GK++LL + G++ + G V + EP
Sbjct: 27 LRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYANYLPDEGQILVRHEGEWVDLVTAEPRE 86
Query: 164 FAATIRQNILFGLPYLRRRYADVI-RVCALQDDFDSL-PNG-DFTVVGERGASL------ 214
R I + +LR VI RV AL + L G V + A L
Sbjct: 87 VLEVRRTTIGYVSQFLR-----VIPRVSALDVVAEPLLARGVPREVARAKAADLLTRLNL 141
Query: 215 ------------SGGQKARINLARAVYKNADIYLLDDPLSAVD 245
SGG++ R+N+AR + I LLD+P +++D
Sbjct: 142 PERLWSLAPATFSGGEQQRVNIARGFIVDYPILLLDEPTASLD 184
>gnl|CDD|184207 PRK13648, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 269
Score = 51.7 bits (124), Expect = 9e-08
Identities = 44/188 (23%), Positives = 78/188 (41%), Gaps = 34/188 (18%)
Query: 89 VSLDNVTAQWSLQNADLTLNAVSITFKPKQLACIIGAIGAGKTSLL------------HI 136
+ NV+ Q+ +A TL VS Q I+G G+GK+++ I
Sbjct: 8 IVFKNVSFQYQ-SDASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEI 66
Query: 137 ILNELRISSGKVS-LGGTVSYASQEP--WIFAATIRQNILFGL-----PY--LRRRYADV 186
N I+ L + Q P + ++ ++ FGL PY + RR ++
Sbjct: 67 FYNNQAITDDNFEKLRKHIGIVFQNPDNQFVGSIVKYDVAFGLENHAVPYDEMHRRVSEA 126
Query: 187 IRVCALQDDFDSLPNGDFTVVGERGASLSGGQKARINLARAVYKNADIYLLDDPLSAVDM 246
++ + + D PN +LSGGQK R+ +A + N + +LD+ S +D
Sbjct: 127 LKQVDMLERADYEPN-----------ALSGGQKQRVAIAGVLALNPSVIILDEATSMLDP 175
Query: 247 HVGKHLFE 254
++L +
Sbjct: 176 DARQNLLD 183
>gnl|CDD|226967 COG4608, AppF, ABC-type oligopeptide transport system, ATPase
component [Amino acid transport and metabolism].
Length = 268
Score = 51.4 bits (124), Expect = 9e-08
Identities = 34/140 (24%), Positives = 61/140 (43%), Gaps = 28/140 (20%)
Query: 107 LNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSLGGTVSYASQEPWIFAA 166
++ VS + K + ++G G GK++L +IL +SG++ G
Sbjct: 29 VDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLEEPTSGEILFEG-------------- 74
Query: 167 TIRQNILFGLPYLRRRYADVIRVCALQDDF-DSLPNGDFTVVGERGASLSGGQKARINLA 225
+ R R +++ L ++F P+ LSGGQ+ RI +A
Sbjct: 75 --KDITKLSKEERRERVLELLEKVGLPEEFLYRYPH-----------ELSGGQRQRIGIA 121
Query: 226 RAVYKNADIYLLDDPLSAVD 245
RA+ N + + D+P+SA+D
Sbjct: 122 RALALNPKLIVADEPVSALD 141
>gnl|CDD|184199 PRK13639, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 275
Score = 51.2 bits (123), Expect = 1e-07
Identities = 41/165 (24%), Positives = 75/165 (45%), Gaps = 39/165 (23%)
Query: 107 LNAVSITFKPKQLACIIGAIGAGKTSL-LHIILNE-LRISSGKVSLGG------------ 152
L ++ + ++ ++G GAGK++L LH N L+ +SG+V + G
Sbjct: 18 LKGINFKAEKGEMVALLGPNGAGKSTLFLH--FNGILKPTSGEVLIKGEPIKYDKKSLLE 75
Query: 153 ---TVSYASQEP--WIFAATIRQNILFG-----LPY--LRRRYADVIRVCALQDDFDSLP 200
TV Q P +FA T+ +++ FG L + +R + ++ ++ + P
Sbjct: 76 VRKTVGIVFQNPDDQLFAPTVEEDVAFGPLNLGLSKEEVEKRVKEALKAVGMEGFENKPP 135
Query: 201 NGDFTVVGERGASLSGGQKARINLARAVYKNADIYLLDDPLSAVD 245
+ LSGGQK R+ +A + +I +LD+P S +D
Sbjct: 136 H-----------HLSGGQKKRVAIAGILAMKPEIIVLDEPTSGLD 169
>gnl|CDD|131367 TIGR02314, ABC_MetN, D-methionine ABC transporter, ATP-binding
protein. Members of this family are the ATP-binding
protein of the D-methionine ABC transporter complex.
Known members belong to the Proteobacteria.
Length = 343
Score = 51.8 bits (124), Expect = 1e-07
Identities = 50/184 (27%), Positives = 81/184 (44%), Gaps = 40/184 (21%)
Query: 89 VSLDNVTAQWSLQNADLT-LNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGK 147
+ L N+T + + LN VS+ Q+ +IGA GAGK++L+ + R +SG
Sbjct: 2 IKLSNITKVFHQGTKTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGS 61
Query: 148 VSLGGTVSYASQEPWIFAATIRQNI--------------LFG---LP---------YLRR 181
V + G + A R+ I +FG LP ++R
Sbjct: 62 VIVDGQDLTTLSNSELTKA--RRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEIKR 119
Query: 182 RYADVIRVCALQDDFDSLPNGDFTVVGERGASLSGGQKARINLARAVYKNADIYLLDDPL 241
+ +++ + L D DS P ++LSGGQK R+ +ARA+ N + L D+
Sbjct: 120 KVTELLALVGLGDKHDSYP-----------SNLSGGQKQRVAIARALASNPKVLLCDEAT 168
Query: 242 SAVD 245
SA+D
Sbjct: 169 SALD 172
>gnl|CDD|213231 cd03264, ABC_drug_resistance_like, ABC-type multidrug transport
system, ATPase component. The biological function of
this family is not well characterized, but display ABC
domains similar to members of ABCA subfamily. ABC
transporters are a large family of proteins involved in
the transport of a wide variety of different compounds,
like sugars, ions, peptides, and more complex organic
molecules. The nucleotide binding domain shows the
highest similarity between all members of the family.
ABC transporters are a subset of nucleotide hydrolases
that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing proteins.
Length = 211
Score = 50.7 bits (122), Expect = 1e-07
Identities = 45/170 (26%), Positives = 78/170 (45%), Gaps = 31/170 (18%)
Query: 89 VSLDNVTAQWSLQNADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKV 148
+ L+N+T ++ + A L+ VS+T P ++G GAGKT+L+ I+ SSG +
Sbjct: 1 LQLENLTKRYGKKRA---LDGVSLTLGPGMYG-LLGPNGAGKTTLMRILATLTPPSSGTI 56
Query: 149 SLGG------------TVSYASQEPWIFAA-TIR-----QNILFGLPYLRRRYADVIRVC 190
+ G + Y QE ++ T+R L G+P + A V V
Sbjct: 57 RIDGQDVLKQPQKLRRRIGYLPQEFGVYPNFTVREFLDYIAWLKGIPS-KEVKARVDEVL 115
Query: 191 ALQDDFDSLPNGDFTVVGERGASLSGGQKARINLARAVYKNADIYLLDDP 240
L + D ++ SLSGG + R+ +A+A+ + I ++D+P
Sbjct: 116 ELVNLGD--------RAKKKIGSLSGGMRRRVGIAQALVGDPSILIVDEP 157
>gnl|CDD|188317 TIGR03415, ABC_choXWV_ATP, choline ABC transporter, ATP-binding
protein. Members of this protein family are the
ATP-binding subunit of a three-protein transporter. This
family belongs, more broadly, to the family of proline
and glycine-betaine transporters, but members have been
identified by direct characterization and by
bioinformatic means as choline transporters. Many
species have several closely-related members of this
family, probably with variable abilities to act
additionally on related quaternary amines [Transport and
binding proteins, Amino acids, peptides and amines].
Length = 382
Score = 51.7 bits (124), Expect = 1e-07
Identities = 46/167 (27%), Positives = 72/167 (43%), Gaps = 34/167 (20%)
Query: 105 LTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELR-ISSGKVSL--GG--------- 152
L ++ S+ + ++ ++G G+GK++LL + N L +S G V + G
Sbjct: 38 LGVHNASLDIEEGEICVLMGLSGSGKSTLLRAV-NGLNPVSRGSVLVKDGDGSVDVANCD 96
Query: 153 ----------TVSYASQE----PWIFAATIRQNILFGLPYLRRRYADVIRVCALQDDFDS 198
VS Q+ PW T+ +N+ FGL A+ + Q +
Sbjct: 97 AATLRRLRTHRVSMVFQQFALLPWR---TVEENVAFGLEMQGMPKAERRKRVDEQLELVG 153
Query: 199 LPNGDFTVVGERGASLSGGQKARINLARAVYKNADIYLLDDPLSAVD 245
L GE LSGG + R+ LARA A I L+D+P SA+D
Sbjct: 154 LAQWADRKPGE----LSGGMQQRVGLARAFATEAPILLMDEPFSALD 196
>gnl|CDD|184587 PRK14241, PRK14241, phosphate transporter ATP-binding protein;
Provisional.
Length = 258
Score = 50.5 bits (121), Expect = 2e-07
Identities = 45/163 (27%), Positives = 73/163 (44%), Gaps = 32/163 (19%)
Query: 110 VSITFKPKQLACIIGAIGAGKTSLL------HIILNELRISSGKVSLGGTVSYAS----- 158
V++ +P+ + IG G GK+++L H ++ R+ G+V L G Y
Sbjct: 23 VNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVE-GEVLLDGEDLYGPGVDPV 81
Query: 159 ----------QEPWIFAA-TIRQNILFGLPYLRRRYADVIRVCALQDDFDSLPNGD-FTV 206
Q P F +IR N++ GL R + + SL + +
Sbjct: 82 AVRRTIGMVFQRPNPFPTMSIRDNVVAGLKLNGVRNKKDLDELVEK----SLRGANLWNE 137
Query: 207 VGER----GASLSGGQKARINLARAVYKNADIYLLDDPLSAVD 245
V +R G LSGGQ+ R+ +ARA+ D+ L+D+P SA+D
Sbjct: 138 VKDRLDKPGGGLSGGQQQRLCIARAIAVEPDVLLMDEPCSALD 180
>gnl|CDD|213183 cd03216, ABC_Carb_Monos_I, First domain of the ATP-binding cassette
component of monosaccharide transport system. This
family represents the domain I of the carbohydrate
uptake proteins that transport only monosaccharides
(Monos). The Carb_Monos family is involved in the uptake
of monosaccharides, such as pentoses (such as xylose,
arabinose, and ribose) and hexoses (such as xylose,
arabinose, and ribose), that cannot be broken down to
simple sugars by hydrolysis. Pentoses include xylose,
arabinose, and ribose. Important hexoses include
glucose, galactose, and fructose. In members of the
Carb_monos family, the single hydrophobic gene product
forms a homodimer while the ABC protein represents a
fusion of two nucleotide-binding domains. However, it is
assumed that two copies of the ABC domains are present
in the assembled transporter.
Length = 163
Score = 49.3 bits (119), Expect = 2e-07
Identities = 34/149 (22%), Positives = 65/149 (43%), Gaps = 42/149 (28%)
Query: 107 LNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSLGGT-VSYASQEPWIFA 165
L+ VS++ + ++ ++G GAGK++L+ I+ + SG++ + G VS+AS
Sbjct: 16 LDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEILVDGKEVSFAS------- 68
Query: 166 ATIRQNILFGLPYLRRRYADVIRVCALQDDFDSLPNGDFTVVGERGASLSGGQKARINLA 225
D+ G V LS G++ + +A
Sbjct: 69 -----------------------------PRDARRAGIAMV-----YQLSVGERQMVEIA 94
Query: 226 RAVYKNADIYLLDDPLSAVDMHVGKHLFE 254
RA+ +NA + +LD+P +A+ + LF+
Sbjct: 95 RALARNARLLILDEPTAALTPAEVERLFK 123
>gnl|CDD|172200 PRK13652, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 277
Score = 50.6 bits (121), Expect = 2e-07
Identities = 40/161 (24%), Positives = 67/161 (41%), Gaps = 33/161 (20%)
Query: 107 LNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSLGG-------------T 153
LN ++ +IG GAGK++L L+ +SG V + G
Sbjct: 20 LNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVLIRGEPITKENIREVRKF 79
Query: 154 VSYASQEP--WIFAATIRQNILFGLPYL-------RRRYADVIRVCALQDDFDSLPNGDF 204
V Q P IF+ T+ Q+I FG L R + + + L++ D +P+
Sbjct: 80 VGLVFQNPDDQIFSPTVEQDIAFGPINLGLDEETVAHRVSSALHMLGLEELRDRVPH--- 136
Query: 205 TVVGERGASLSGGQKARINLARAVYKNADIYLLDDPLSAVD 245
LSGG+K R+ +A + + +LD+P + +D
Sbjct: 137 --------HLSGGEKKRVAIAGVIAMEPQVLVLDEPTAGLD 169
>gnl|CDD|226631 COG4152, COG4152, ABC-type uncharacterized transport system, ATPase
component [General function prediction only].
Length = 300
Score = 50.4 bits (121), Expect = 2e-07
Identities = 40/174 (22%), Positives = 74/174 (42%), Gaps = 31/174 (17%)
Query: 89 VSLDNVTAQWSLQNADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKV 148
+ ++ VT + + A ++ +S P ++ ++G GAGKT+ +IL L + G++
Sbjct: 3 LEIEGVTKSFGDKKA---VDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEPTEGEI 59
Query: 149 SL-GGTVSYASQEPWIFAATIRQNILFGLPYLRRRYA-----DVIRVCA------LQDDF 196
+ GG +S I+ I + LP R Y D ++ A +
Sbjct: 60 TWNGGPLSQ----------EIKNRIGY-LPEERGLYPKMTVEDQLKYLAELKGMPKAEIQ 108
Query: 197 DSLPN--GDFTVVGERGA---SLSGGQKARINLARAVYKNADIYLLDDPLSAVD 245
L +VG++ LS G + +I AV ++ +LD+P S +D
Sbjct: 109 KKLQAWLERLEIVGKKTKKIKELSKGNQQKIQFISAVIHEPELLILDEPFSGLD 162
>gnl|CDD|213190 cd03223, ABCD_peroxisomal_ALDP, ATP-binding cassette domain of
peroxisomal transporter, subfamily D. Peroxisomal
ATP-binding cassette transporter (Pat) is involved in
the import of very long-chain fatty acids (VLCFA) into
the peroxisome. The peroxisomal membrane forms a
permeability barrier for a wide variety of metabolites
required for and formed during fatty acid
beta-oxidation. To communicate with the cytoplasm and
mitochondria, peroxisomes need dedicated proteins to
transport such hydrophilic molecules across their
membranes. X-linked adrenoleukodystrophy (X-ALD) is
caused by mutations in the ALD gene, which encodes ALDP
(adrenoleukodystrophy protein ), a peroxisomal integral
membrane protein that is a member of the ATP-binding
cassette (ABC) transporter protein family. The disease
is characterized by a striking and unpredictable
variation in phenotypic expression. Phenotypes include
the rapidly progressive childhood cerebral form (CCALD),
the milder adult form, adrenomyeloneuropathy (AMN), and
variants without neurologic involvement (i.e.
asymptomatic).
Length = 166
Score = 48.7 bits (117), Expect = 3e-07
Identities = 34/161 (21%), Positives = 62/161 (38%), Gaps = 40/161 (24%)
Query: 89 VSLDNVTAQWSLQNADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNEL-RISSGK 147
+ L+N++ + + L +S KP I G G GK+SL + L SG+
Sbjct: 1 IELENLSLA--TPDGRVLLKDLSFEIKPGDRLLITGPSGTGKSSLFRAL-AGLWPWGSGR 57
Query: 148 VSL--GGTVSYASQEPWIFAATIRQNILFGLPYLRRRYADVIRVCALQDDFDSLPNGDFT 205
+ + G + + Q P++ T+R+ +++ P+
Sbjct: 58 IGMPEGEDLLFLPQRPYLPLGTLREQLIY--PWDDV------------------------ 91
Query: 206 VVGERGASLSGGQKARINLARAVYKNADIYLLDDPLSAVDM 246
LSGG++ R+ AR + LD+ SA+D
Sbjct: 92 --------LSGGEQQRLAFARLLLHKPKFVFLDEATSALDE 124
>gnl|CDD|172744 PRK14256, PRK14256, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 252
Score = 50.0 bits (119), Expect = 3e-07
Identities = 48/187 (25%), Positives = 80/187 (42%), Gaps = 41/187 (21%)
Query: 89 VSLDNVTAQWSLQNADLTLNAVSITFKPKQLACIIGAIGAGKTSLL------HIILNELR 142
V L+ + + +A + VS+ F + IIG G GK+++L H ++ R
Sbjct: 5 VKLEQLNVHFGKNHA---VKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSAR 61
Query: 143 ISSGKVSLGGT---------------VSYASQEPWIFAA-TIRQNILFGLPY---LRRRY 183
++ GK+ L T V Q+P F A +I N++ G + R
Sbjct: 62 VT-GKILLDDTDIYDRGVDPVSIRRRVGMVFQKPNPFPAMSIYDNVIAGYKLNGRVNRSE 120
Query: 184 ADVI-----RVCALQDDFDSLPNGDFTVVGERGASLSGGQKARINLARAVYKNADIYLLD 238
AD I + AL D+ + LSGGQ+ R+ +AR + ++ L+D
Sbjct: 121 ADEIVESSLKRVALWDEVKDRLKSN-------AMELSGGQQQRLCIARTIAVKPEVILMD 173
Query: 239 DPLSAVD 245
+P SA+D
Sbjct: 174 EPASALD 180
>gnl|CDD|223488 COG0411, LivG, ABC-type branched-chain amino acid transport
systems, ATPase component [Amino acid transport and
metabolism].
Length = 250
Score = 49.5 bits (119), Expect = 4e-07
Identities = 38/158 (24%), Positives = 68/158 (43%), Gaps = 25/158 (15%)
Query: 107 LNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSLGGT------------- 153
+N VS+ +P ++ +IG GAGKT+L ++I + SSG V G
Sbjct: 20 VNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPSSGTVIFRGRDITGLPPHRIARL 79
Query: 154 -VSYASQEPWIFAA-TIRQNILFGLPYLRRRYADVIRVCALQDDFDSLPNGDFTV---VG 208
++ Q +F T+ +N+ G + R + ++ + + + VG
Sbjct: 80 GIARTFQITRLFPGLTVLENVAVGA-HARLGLSGLLGRPRARKEEREARERARELLEFVG 138
Query: 209 ------ERGASLSGGQKARINLARAVYKNADIYLLDDP 240
+LS GQ+ R+ +ARA+ + LLD+P
Sbjct: 139 LGELADRPAGNLSYGQQRRLEIARALATQPKLLLLDEP 176
>gnl|CDD|213232 cd03265, ABC_DrrA, Daunorubicin/doxorubicin resistance ATP-binding
protein. DrrA is the ATP-binding protein component of a
bacterial exporter complex that confers resistance to
the antibiotics daunorubicin and doxorubicin. In
addition to DrrA, the complex includes an integral
membrane protein called DrrB. DrrA belongs to the ABC
family of transporters and shares sequence and
functional similarities with a protein found in cancer
cells called P-glycoprotein. ABC transporters are a
large family of proteins involved in the transport of a
wide variety of different compounds, like sugars, ions,
peptides, and more complex organic molecules. The
nucleotide binding domain shows the highest similarity
between all members of the family. ABC transporters are
a subset of nucleotide hydrolases that contain a
signature motif, Q-loop, and H-loop/switch region in
addition to the Walker A motif/P-loop and Walker B motif
commonly found in a number of ATP- and GTP-binding and
hydrolyzing proteins.
Length = 220
Score = 48.9 bits (117), Expect = 5e-07
Identities = 34/168 (20%), Positives = 72/168 (42%), Gaps = 31/168 (18%)
Query: 107 LNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSLGG------------TV 154
+ VS + ++ ++G GAGKT+ + ++ L+ +SG+ ++ G +
Sbjct: 16 VRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVVREPREVRRRI 75
Query: 155 SYASQEPWIFAA-TIRQNI-----LFGLPY--LRRRYADVIRVCALQDDFDSLPNGDFTV 206
Q+ + T +N+ L+G+P R R +++ L + D
Sbjct: 76 GIVFQDLSVDDELTGWENLYIHARLYGVPGAERRERIDELLDFVGLLEAAD--------- 126
Query: 207 VGERGASLSGGQKARINLARAVYKNADIYLLDDPLSAVDMHVGKHLFE 254
+ SGG + R+ +AR++ ++ LD+P +D H++E
Sbjct: 127 --RLVKTYSGGMRRRLEIARSLVHRPEVLFLDEPTIGLDPQTRAHVWE 172
>gnl|CDD|226364 COG3845, COG3845, ABC-type uncharacterized transport systems,
ATPase components [General function prediction only].
Length = 501
Score = 49.9 bits (120), Expect = 5e-07
Identities = 40/173 (23%), Positives = 75/173 (43%), Gaps = 36/173 (20%)
Query: 107 LNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSLGGT-VSYAS------- 158
+ VS++ K ++ ++G GAGK++L+ I+ + SG++ + G V S
Sbjct: 20 NDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPDSGEIRVDGKEVRIKSPRDAIRL 79
Query: 159 ------QEPWIF-AATIRQNILFGLPYL----------RRRYADVIRVCALQDDFDSLPN 201
Q + T+ +NI+ GL R R ++ L D D+
Sbjct: 80 GIGMVHQHFMLVPTLTVAENIILGLEPSKGGLIDRRQARARIKELSERYGLPVDPDAK-- 137
Query: 202 GDFTVVGERGASLSGGQKARINLARAVYKNADIYLLDDPLSAVDMHVGKHLFE 254
V + LS G++ R+ + +A+Y+ A + +LD+P + + LFE
Sbjct: 138 -----VAD----LSVGEQQRVEILKALYRGARLLILDEPTAVLTPQEADELFE 181
Score = 31.0 bits (71), Expect = 0.71
Identities = 32/159 (20%), Positives = 55/159 (34%), Gaps = 45/159 (28%)
Query: 121 CIIGAIGAGKTSLLHIILNELRISSGKVSLGGTVSYASQEPWIFAATIRQNILFGLPYL- 179
I G G G++ L+ I + +SG++ L G + + + R+ GL Y+
Sbjct: 288 GIAGVAGNGQSELVEAISGLRKPASGRILLNG-------KDVLGRLSPRERRRLGLAYVP 340
Query: 180 --RRRYA-----------------------------DVIRVCA--LQDDFDSLPNGDFTV 206
R + IR A L ++FD
Sbjct: 341 EDRHGHGLVLDLSLAENLVLGRHDKKPFSRGGFLDRRAIRKFARELIEEFDVRAPSP--- 397
Query: 207 VGERGASLSGGQKARINLARAVYKNADIYLLDDPLSAVD 245
SLSGG + ++ LAR + + D+ + P +D
Sbjct: 398 -DAPARSLSGGNQQKLILARELARRPDLLIAAQPTRGLD 435
>gnl|CDD|172759 PRK14271, PRK14271, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 276
Score = 48.9 bits (116), Expect = 7e-07
Identities = 51/169 (30%), Positives = 75/169 (44%), Gaps = 40/169 (23%)
Query: 107 LNAVSITFKPKQLACIIGAIGAGKTSLLHIILNEL--RIS----SGKVSLGGT------- 153
L+ VS+ F + + ++G G+GKT+ L LN + ++S SG V LGG
Sbjct: 37 LDQVSMGFPARAVTSLMGPTGSGKTTFLRT-LNRMNDKVSGYRYSGDVLLGGRSIFNYRD 95
Query: 154 -------VSYASQEPWIFAATIRQNILFGLPYLRRRYADVIRVCALQDDFDSLPNGDFTV 206
V Q P F +I N+L G+ R + V R +F + T
Sbjct: 96 VLEFRRRVGMLFQRPNPFPMSIMDNVLAGV----RAHKLVPR-----KEFRGVAQARLTE 146
Query: 207 VGERGA----------SLSGGQKARINLARAVYKNADIYLLDDPLSAVD 245
VG A LSGGQ+ + LAR + N ++ LLD+P SA+D
Sbjct: 147 VGLWDAVKDRLSDSPFRLSGGQQQLLCLARTLAVNPEVLLLDEPTSALD 195
>gnl|CDD|172749 PRK14261, PRK14261, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 253
Score = 48.7 bits (116), Expect = 8e-07
Identities = 45/171 (26%), Positives = 77/171 (45%), Gaps = 41/171 (23%)
Query: 106 TLNAVSITFKPKQLACIIGAIGAGKTSLLHII--LNEL----RISSGKVSLGGT------ 153
L ++I+ ++ +IG G GK++LL +N+L RI+ G + G
Sbjct: 21 ALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRIT-GDILYNGENIMDSG 79
Query: 154 ---------VSYASQEPWIFAATIRQNILFGLPYLR----RRYADVI-----RVCALQDD 195
+ Q P F +I +N+ +G P + ++ D I + AL D+
Sbjct: 80 ADVVALRRKIGMVFQRPNPFPKSIYENVAYG-PRIHGEKNKKTLDTIVEKSLKGAALWDE 138
Query: 196 F-DSLPNGDFTVVGERGASLSGGQKARINLARAVYKNADIYLLDDPLSAVD 245
D L + SLSGGQ+ R+ +AR + N ++ L+D+P SA+D
Sbjct: 139 VKDRL--------HDSALSLSGGQQQRLCIARTLAVNPEVILMDEPCSALD 181
>gnl|CDD|236554 PRK09536, btuD, corrinoid ABC transporter ATPase; Reviewed.
Length = 402
Score = 49.1 bits (117), Expect = 8e-07
Identities = 40/162 (24%), Positives = 71/162 (43%), Gaps = 28/162 (17%)
Query: 107 LNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSLGG-------------T 153
L+ V ++ + L ++G GAGKT+LL I L ++G V + G
Sbjct: 19 LDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEALSARAASRR 78
Query: 154 VSYASQEPWI-FAATIRQNILFGLPYLRRRYAD-------VIRVCALQDDFDSLPNGDFT 205
V+ Q+ + F +RQ + G R R+ + + + T
Sbjct: 79 VASVPQDTSLSFEFDVRQVVEMGRTPHRSRFDTWTETDRAAVERAMERTGVAQFADRPVT 138
Query: 206 VVGERGASLSGGQKARINLARAVYKNADIYLLDDPLSAVDMH 247
SLSGG++ R+ LARA+ + + LLD+P +++D++
Sbjct: 139 -------SLSGGERQRVLLARALAQATPVLLLDEPTASLDIN 173
>gnl|CDD|184195 PRK13635, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 279
Score = 48.5 bits (116), Expect = 9e-07
Identities = 42/181 (23%), Positives = 79/181 (43%), Gaps = 38/181 (20%)
Query: 89 VSLDNVTAQWSLQNADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKV 148
+ +++++ ++ A L VS + + I+G G+GK++L ++ L +G +
Sbjct: 6 IRVEHISFRYP-DAATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTI 64
Query: 149 SLGGTVSYASQEP-W--------IF--------AATIRQNILFGL-------PYLRRRYA 184
++GG V S+E W +F AT++ ++ FGL + R
Sbjct: 65 TVGGMV--LSEETVWDVRRQVGMVFQNPDNQFVGATVQDDVAFGLENIGVPREEMVERVD 122
Query: 185 DVIRVCALQDDFDSLPNGDFTVVGERGASLSGGQKARINLARAVYKNADIYLLDDPLSAV 244
+R ++D + P LSGGQK R+ +A + DI +LD+ S +
Sbjct: 123 QALRQVGMEDFLNREP-----------HRLSGGQKQRVAIAGVLALQPDIIILDEATSML 171
Query: 245 D 245
D
Sbjct: 172 D 172
>gnl|CDD|182817 PRK10895, PRK10895, lipopolysaccharide ABC transporter ATP-binding
protein; Provisional.
Length = 241
Score = 48.4 bits (115), Expect = 1e-06
Identities = 41/164 (25%), Positives = 70/164 (42%), Gaps = 44/164 (26%)
Query: 110 VSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSLGGT--------------VS 155
VS+T ++ ++G GAGKT+ ++++ + +G + + +
Sbjct: 22 VSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISLLPLHARARRGIG 81
Query: 156 YASQEPWIFAATIRQNILFGLPYLRRR---YADVIRVCALQDDFDSLPNGD--------F 204
Y QE IF RR Y +++ V ++DD + D F
Sbjct: 82 YLPQEASIF----------------RRLSVYDNLMAVLQIRDDLSAEQREDRANELMEEF 125
Query: 205 TVVGER---GASLSGGQKARINLARAVYKNADIYLLDDPLSAVD 245
+ R G SLSGG++ R+ +ARA+ N LLD+P + VD
Sbjct: 126 HIEHLRDSMGQSLSGGERRRVEIARALAANPKFILLDEPFAGVD 169
>gnl|CDD|131816 TIGR02769, nickel_nikE, nickel import ATP-binding protein NikE.
This family represents the NikE subunit of a
multisubunit nickel import ABC transporter complex.
Nickel, once imported, may be used in urease and in
certain classes of hydrogenase and superoxide dismutase
[Transport and binding proteins, Cations and iron
carrying compounds].
Length = 265
Score = 47.9 bits (114), Expect = 1e-06
Identities = 41/169 (24%), Positives = 70/169 (41%), Gaps = 39/169 (23%)
Query: 107 LNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSLGG-------------- 152
L VS++ + + ++G G GK++L ++L + + G VS G
Sbjct: 27 LTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQGTVSFRGQDLYQLDRKQRRAF 86
Query: 153 --TV------SYASQEP-----WIFAATIRQNILFGLPYLRRRYADVIRVCALQ-DDFDS 198
V S ++ P I +R + R A+++ + L+ +D D
Sbjct: 87 RRDVQLVFQDSPSAVNPRMTVRQIIGEPLRHLTSLDESEQKARIAELLDMVGLRSEDADK 146
Query: 199 LPNGDFTVVGERGASLSGGQKARINLARAVYKNADIYLLDDPLSAVDMH 247
LP LSGGQ RIN+ARA+ + +LD+ +S +DM
Sbjct: 147 LP-----------RQLSGGQLQRINIARALAVKPKLIVLDEAVSNLDMV 184
>gnl|CDD|237645 PRK14235, PRK14235, phosphate transporter ATP-binding protein;
Provisional.
Length = 267
Score = 48.2 bits (115), Expect = 1e-06
Identities = 46/170 (27%), Positives = 78/170 (45%), Gaps = 40/170 (23%)
Query: 107 LNAVSITFKPKQLACIIGAIGAGKTSLLHII--LNEL----RISSGKVSLGGTVSYAS-- 158
L V + K + IG G GK++ L + +N+ R++ GK++L G Y
Sbjct: 35 LFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVT-GKITLDGEDIYDPRL 93
Query: 159 -------------QEPWIFAATIRQNILFG--LPYLRRRYADV-------IRVCALQDDF 196
Q+P F +I +N+ +G + L R A++ +R L ++
Sbjct: 94 DVVELRARVGMVFQKPNPFPKSIYENVAYGPRIHGLARSKAELDEIVETSLRKAGLWEEV 153
Query: 197 -DSLPNGDFTVVGERGASLSGGQKARINLARAVYKNADIYLLDDPLSAVD 245
D L E G LSGGQ+ R+ +ARA+ + ++ L+D+P SA+D
Sbjct: 154 KDRL--------HEPGTGLSGGQQQRLCIARAIAVSPEVILMDEPCSALD 195
>gnl|CDD|172751 PRK14263, PRK14263, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 261
Score = 48.1 bits (114), Expect = 1e-06
Identities = 33/94 (35%), Positives = 48/94 (51%), Gaps = 15/94 (15%)
Query: 159 QEPWIFAATIRQNILFGLPYLR------RRYADVIRVCALQDDF-DSLPNGDFTVVGERG 211
Q+P F+ +I N+ FGL R R ++ AL D+ D L G
Sbjct: 96 QQPNPFSMSIFDNVAFGLRLNRYKGDLGDRVKHALQGAALWDEVKDKLK--------VSG 147
Query: 212 ASLSGGQKARINLARAVYKNADIYLLDDPLSAVD 245
SLSGGQ+ R+ +ARA+ ++ LLD+P SA+D
Sbjct: 148 LSLSGGQQQRLCIARAIATEPEVLLLDEPCSALD 181
>gnl|CDD|183231 PRK11614, livF, leucine/isoleucine/valine transporter ATP-binding
subunit; Provisional.
Length = 237
Score = 47.6 bits (113), Expect = 1e-06
Identities = 41/168 (24%), Positives = 79/168 (47%), Gaps = 25/168 (14%)
Query: 89 VSLDNVTAQWSLQNADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKV 148
+S D V+A + A L+ VS+ ++ +IGA GAGKT+LL + + R +SG++
Sbjct: 6 LSFDKVSAHYGKIQA---LHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRI 62
Query: 149 SLGG--------------TVSYASQEPWIFA-ATIRQNILFGLPYL-RRRYADVIRVCAL 192
G V+ + +F+ T+ +N+ G + R ++ + R+ +
Sbjct: 63 VFDGKDITDWQTAKIMREAVAIVPEGRRVFSRMTVEENLAMGGFFAERDQFQE--RIKWV 120
Query: 193 QDDFDSLPNGDFTVVGERGASLSGGQKARINLARAVYKNADIYLLDDP 240
+ F L +R ++SGG++ + + RA+ + LLD+P
Sbjct: 121 YELFPRL----HERRIQRAGTMSGGEQQMLAIGRALMSQPRLLLLDEP 164
>gnl|CDD|172762 PRK14274, PRK14274, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 259
Score = 47.6 bits (113), Expect = 2e-06
Identities = 42/168 (25%), Positives = 70/168 (41%), Gaps = 37/168 (22%)
Query: 107 LNAVSITFKPKQLACIIGAIGAGKTSLL-----------------HIILNELRISSGKV- 148
L ++++ ++ IIG G GK++ + + N I GKV
Sbjct: 28 LKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGKVD 87
Query: 149 --SLGGTVSYASQEPWIFAATIRQNILFG--------LPYLRRRYADVIRVCALQDDF-D 197
L + Q+ F +I N+ +G L+ ++ AL D+ D
Sbjct: 88 LVELRKNIGMVFQKGNPFPQSIFDNVAYGPRIHGTKNKKKLQEIVEKSLKDVALWDEVKD 147
Query: 198 SLPNGDFTVVGERGASLSGGQKARINLARAVYKNADIYLLDDPLSAVD 245
L + SLSGGQ+ R+ +ARA+ N D+ L+D+P SA+D
Sbjct: 148 RL--------HTQALSLSGGQQQRLCIARALATNPDVLLMDEPTSALD 187
>gnl|CDD|213204 cd03237, ABC_RNaseL_inhibitor_domain2, The ATP-binding cassette
domain 2 of RNase L inhibitor. The ABC ATPase, RNase L
inhibitor (RLI), is a key enzyme in ribosomal
biogenesis, formation of translation preinitiation
complexes, and assembly of HIV capsids. RLI's are not
transport proteins and thus cluster with a group of
soluble proteins that lack the transmembrane components
commonly found in other members of the family.
Structurally, RLI's have an N-terminal Fe-S domain and
two nucleotide-binding domains which are arranged to
form two composite active sites in their interface
cleft. RLI is one of the most conserved enzymes between
archaea and eukaryotes with a sequence identity of more
than 48%. The high degree of evolutionary conservation
suggests that RLI performs a central role in archaeal
and eukaryotic physiology.
Length = 246
Score = 47.4 bits (113), Expect = 2e-06
Identities = 36/150 (24%), Positives = 64/150 (42%), Gaps = 22/150 (14%)
Query: 104 DLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKV-SLGGTVSYASQEPW 162
+ TL + ++ I+G G GKT+ + ++ L+ G + TVSY Q
Sbjct: 12 EFTLEVEGGSISESEVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELDTVSYKPQYIK 71
Query: 163 I-FAATIRQ------NILFGLPYLRRRYADVIRVCALQDDFDSLPNGDFTVVGERGASLS 215
+ T+R + PY + ++ + ++ D LS
Sbjct: 72 ADYEGTVRDLLSSITKDFYTHPYFK---TEIAKPLQIEQILDREVP-----------ELS 117
Query: 216 GGQKARINLARAVYKNADIYLLDDPLSAVD 245
GG+ R+ +A + K+ADIYLLD+P + +D
Sbjct: 118 GGELQRVAIAACLSKDADIYLLDEPSAYLD 147
>gnl|CDD|172748 PRK14260, PRK14260, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 259
Score = 47.7 bits (113), Expect = 2e-06
Identities = 40/174 (22%), Positives = 71/174 (40%), Gaps = 39/174 (22%)
Query: 102 NADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSLGGTVSYASQ-- 159
N + +S+ ++ IIG G GK++ + LN + G V + G V + Q
Sbjct: 18 NTSKAIEGISMDIYRNKVTAIIGPSGCGKSTFIKT-LNRISELEGPVKVEGVVDFFGQNI 76
Query: 160 -------------------EPWIFAATIRQNILFGLPYLRRR--------YADVIRVCAL 192
P F +I +N+ +G+ + ++ AL
Sbjct: 77 YDPRININRLRRQIGMVFQRPNPFPMSIYENVAYGVRISAKLPQADLDEIVESALKGAAL 136
Query: 193 QDDF-DSLPNGDFTVVGERGASLSGGQKARINLARAVYKNADIYLLDDPLSAVD 245
+ D L + + +G LSGGQ+ R+ +ARA+ + L+D+P SA+D
Sbjct: 137 WQEVKDKL---NKSALG-----LSGGQQQRLCIARALAIKPKVLLMDEPCSALD 182
>gnl|CDD|182182 PRK09984, PRK09984, phosphonate/organophosphate ester transporter
subunit; Provisional.
Length = 262
Score = 47.7 bits (113), Expect = 2e-06
Identities = 44/179 (24%), Positives = 78/179 (43%), Gaps = 44/179 (24%)
Query: 102 NADLTLNAVSITFKPKQLACIIGAIGAGKTSLLH----IILNELRISSGKVSLGGTVSYA 157
N L+AV + ++ ++G G+GK++LL +I + S LG TV
Sbjct: 15 NQHQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQRE 74
Query: 158 -----------SQEPWIFAA-------TIRQNILFG----LPYLR---RRYADVIRVCAL 192
+ +IF ++ +N+L G P+ R + + AL
Sbjct: 75 GRLARDIRKSRANTGYIFQQFNLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRAL 134
Query: 193 QDDFDSLPNGDFTVVG------ERGASLSGGQKARINLARAVYKNADIYLLDDPLSAVD 245
Q T VG +R ++LSGGQ+ R+ +ARA+ + A + L D+P++++D
Sbjct: 135 QA---------LTRVGMVHFAHQRVSTLSGGQQQRVAIARALMQQAKVILADEPIASLD 184
>gnl|CDD|237419 PRK13536, PRK13536, nodulation factor exporter subunit NodI;
Provisional.
Length = 340
Score = 47.9 bits (114), Expect = 2e-06
Identities = 45/173 (26%), Positives = 76/173 (43%), Gaps = 22/173 (12%)
Query: 107 LNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVS-LG-------------- 151
+N +S T + ++G GAGK+++ +IL +GK++ LG
Sbjct: 57 VNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKITVLGVPVPARARLARARI 116
Query: 152 GTVSYASQEPWIFAATIRQNILFGLPYLRRRYADVIRVCALQDDFDSLPNGDFTVVGERG 211
G V F T+R+N+L Y ++ V +F L + R
Sbjct: 117 GVVPQFDNLDLEF--TVRENLLVFGRYFGMSTREIEAVIPSLLEFARLESK----ADARV 170
Query: 212 ASLSGGQKARINLARAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGCLTSG 264
+ LSGG K R+ LARA+ + + +LD+P + +D H +HL + + L G
Sbjct: 171 SDLSGGMKRRLTLARALINDPQLLILDEPTTGLDPH-ARHLIWERLRSLLARG 222
>gnl|CDD|172745 PRK14257, PRK14257, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 329
Score = 47.8 bits (113), Expect = 2e-06
Identities = 44/180 (24%), Positives = 76/180 (42%), Gaps = 43/180 (23%)
Query: 98 WSLQNADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHII--LNEL-------------- 141
W + L+ +++ K ++ IG G GK++ L + LN+L
Sbjct: 89 WYMNRTKHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLG 148
Query: 142 -RISSGKVS---LGGTVSYASQEPWIFAATIRQNILFG--------LPYLRRRYADVIRV 189
S K+S L + Q+P F +I N+ +G L + ++
Sbjct: 149 TNTRSKKISSLELRTRIGMVFQKPTPFEMSIFDNVAYGPRNNGINDRKILEKIVEKSLKS 208
Query: 190 CAL----QDDFDSLPNGDFTVVGERGASLSGGQKARINLARAVYKNADIYLLDDPLSAVD 245
AL +DD D + G +LSGGQ+ R+ +ARA+ ++ L+D+P SA+D
Sbjct: 209 AALWDEVKDDLD-----------KAGNALSGGQQQRLCIARAIALEPEVLLMDEPTSALD 257
>gnl|CDD|163431 TIGR03719, ABC_ABC_ChvD, ATP-binding cassette protein, ChvD family.
Members of this protein family have two copies of the
ABC transporter ATP-binding cassette, but are found
outside the common ABC transporter operon structure that
features integral membrane permease proteins and
substrate-binding proteins encoded next to the
ATP-binding cassette (ABC domain) protein. The member
protein ChvD from Agrobacterium tumefaciens was
identified as both a candidate to interact with VirB8,
based on yeast two-hybrid analysis, and as an apparent
regulator of VirG. The general function of this protein
family is unknown.
Length = 552
Score = 47.6 bits (114), Expect = 3e-06
Identities = 38/141 (26%), Positives = 64/141 (45%), Gaps = 45/141 (31%)
Query: 122 IIGAIGAGKTSLLHIILNELRISSGKVSLGGTV--SYASQ-----EPWIFAATIRQNILF 174
+IG GAGK++L +I + + SG + +G TV +Y Q +P T+ + I
Sbjct: 353 VIGPNGAGKSTLFRMITGQEQPDSGTIKIGETVKLAYVDQSRDALDP---NKTVWEEISG 409
Query: 175 GLPYLRRRYADVIRVCALQDDFDSLPNGDFTV-----VGE---RGA-------SLSGGQK 219
GL D+I++ G V VG +G+ LSGG++
Sbjct: 410 GL--------DIIQL------------GKREVPSRAYVGRFNFKGSDQQKKVGQLSGGER 449
Query: 220 ARINLARAVYKNADIYLLDDP 240
R++LA+ + ++ LLD+P
Sbjct: 450 NRVHLAKTLKSGGNVLLLDEP 470
Score = 47.6 bits (114), Expect = 3e-06
Identities = 42/173 (24%), Positives = 72/173 (41%), Gaps = 44/173 (25%)
Query: 107 LNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKV--SLGGTVSYASQEPWI- 163
L +S++F P ++G GAGK++LL I+ + +G+ + G V Y QEP +
Sbjct: 21 LKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFNGEARPAPGIKVGYLPQEPQLD 80
Query: 164 FAATIRQNILFGLPYLRR---RYADV-IRVCALQDDFDSL-------------------- 199
T+R+N+ G+ ++ R+ ++ + D D+L
Sbjct: 81 PTKTVRENVEEGVAEIKDALDRFNEISAKFAEPDADMDALLAEQAELQEIIDAADAWDLD 140
Query: 200 ------------PNGDFTVVGERGASLSGGQKARINLARAVYKNADIYLLDDP 240
P D V LSGG++ R+ L R + D+ LLD+P
Sbjct: 141 RKLEIAMDALRCPPWDADV-----TKLSGGERRRVALCRLLLSKPDMLLLDEP 188
>gnl|CDD|237651 PRK14266, PRK14266, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 250
Score = 46.9 bits (111), Expect = 3e-06
Identities = 43/169 (25%), Positives = 76/169 (44%), Gaps = 39/169 (23%)
Query: 107 LNAVSITFKPKQLACIIGAIGAGKTSLLHII--LNELRISS----GKVSLGGT------- 153
L V++ + +IG G GK++ + + +N+L I G + L G
Sbjct: 19 LKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDL-IPGFRHEGHIYLDGVDIYDPAV 77
Query: 154 --------VSYASQEPWIFAATIRQNILFGL--------PYLRRRYADVIRVCALQDDF- 196
V Q+P F +I N+ +GL ++ R + ++ AL D+
Sbjct: 78 DVVELRKKVGMVFQKPNPFPKSIFDNVAYGLRIHGEDDEDFIEERVEESLKAAALWDEVK 137
Query: 197 DSLPNGDFTVVGERGASLSGGQKARINLARAVYKNADIYLLDDPLSAVD 245
D L D + +G LSGGQ+ R+ +AR + + ++ L+D+P SA+D
Sbjct: 138 DKL---DKSALG-----LSGGQQQRLCIARTIAVSPEVILMDEPCSALD 178
>gnl|CDD|233208 TIGR00956, 3a01205, Pleiotropic Drug Resistance (PDR) Family
protein. [Transport and binding proteins, Other].
Length = 1394
Score = 47.4 bits (113), Expect = 5e-06
Identities = 45/164 (27%), Positives = 76/164 (46%), Gaps = 33/164 (20%)
Query: 107 LNAVSITFKPKQLACIIGAIGAGKTSLLH---------IILNELRISSGK---VSLGGTV 154
LN V KP L ++GA GAGKT+LL+ +I R+ +G+ S ++
Sbjct: 779 LNNVDGWVKPGTLTALMGASGAGKTTLLNVLAERVTTGVITGGDRLVNGRPLDSSFQRSI 838
Query: 155 SYASQEPW-IFAATIRQNILFGLPYLRR----------RYAD-VIRVCALQDDFDSLPNG 202
Y Q+ + +T+R+++ F YLR+ Y + VI++ ++ D+
Sbjct: 839 GYVQQQDLHLPTSTVRESLRFS-AYLRQPKSVSKSEKMEYVEEVIKLLEMESYADA---- 893
Query: 203 DFTVVGERGASLSGGQKARINLA-RAVYKNADIYLLDDPLSAVD 245
VVG G L+ Q+ R+ + V K + LD+P S +D
Sbjct: 894 ---VVGVPGEGLNVEQRKRLTIGVELVAKPKLLLFLDEPTSGLD 934
Score = 30.1 bits (68), Expect = 1.6
Identities = 39/168 (23%), Positives = 62/168 (36%), Gaps = 44/168 (26%)
Query: 107 LNAVSITFKPKQLACIIGAIGAGKTSLLHIILNEL----RISSGKVS------------L 150
L + KP +L ++G G+G ++LL I + G ++
Sbjct: 77 LKPMDGLIKPGELTVVLGRPGSGCSTLLKTIASNTDGFHIGVEGVITYDGITPEEIKKHY 136
Query: 151 GGTVSYASQ-----------EPWIFAATIR--QNILFGLPYL--RRRYADVI-RVCALQD 194
G V Y ++ E FAA + QN G+ + ADV L
Sbjct: 137 RGDVVYNAETDVHFPHLTVGETLDFAARCKTPQNRPDGVSREEYAKHIADVYMATYGLSH 196
Query: 195 DFDSLPNGDFTVVGE---RGASLSGGQKARINLARAVYKNADIYLLDD 239
+ T VG RG +SGG++ R+++A A A I D+
Sbjct: 197 TRN-------TKVGNDFVRG--VSGGERKRVSIAEASLGGAKIQCWDN 235
>gnl|CDD|236947 PRK11650, ugpC, glycerol-3-phosphate transporter ATP-binding
subunit; Provisional.
Length = 356
Score = 46.8 bits (112), Expect = 5e-06
Identities = 42/180 (23%), Positives = 78/180 (43%), Gaps = 40/180 (22%)
Query: 89 VSLDNVTAQWSLQNADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKV 148
+ L V + + + + + ++G G GK++LL ++ RI+SG++
Sbjct: 4 LKLQAVRKSY--DGKTQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERITSGEI 61
Query: 149 SLGGTV----------------SYASQEPWIFAATIRQNILFGL-------PYLRRRYAD 185
+GG V +YA P + ++R+N+ +GL + R A+
Sbjct: 62 WIGGRVVNELEPADRDIAMVFQNYALY-PHM---SVRENMAYGLKIRGMPKAEIEERVAE 117
Query: 186 VIRVCALQDDFDSLPNGDFTVVGERGASLSGGQKARINLARAVYKNADIYLLDDPLSAVD 245
R+ L+ D P LSGGQ+ R+ + RA+ + ++L D+PLS +D
Sbjct: 118 AARILELEPLLDRKP-----------RELSGGQRQRVAMGRAIVREPAVFLFDEPLSNLD 166
>gnl|CDD|184128 PRK13541, PRK13541, cytochrome c biogenesis protein CcmA;
Provisional.
Length = 195
Score = 45.2 bits (107), Expect = 7e-06
Identities = 38/158 (24%), Positives = 61/158 (38%), Gaps = 28/158 (17%)
Query: 99 SLQNADLTLN-----AVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSLGGT 153
SL + +SITF P + I GA G GK+SLL +I ++ SSG +
Sbjct: 3 SLHQLQFNIEQKNLFDLSITFLPSAITYIKGANGCGKSSLLRMIAGIMQPSSGNIYYKNC 62
Query: 154 VSYASQEPWI------FAATIRQNILFGLPYLRRRYADVIRVCA------LQDDFDSLPN 201
+P+ + + L + Y + A L D D
Sbjct: 63 NINNIAKPYCTYIGHNLGLKLEMTVFENLKFWSEIYNSAETLYAAIHYFKLHDLLD---- 118
Query: 202 GDFTVVGERGASLSGGQKARINLARAVYKNADIYLLDD 239
E+ SLS G + + +AR + +D++LLD+
Sbjct: 119 -------EKCYSLSSGMQKIVAIARLIACQSDLWLLDE 149
>gnl|CDD|130324 TIGR01257, rim_protein, retinal-specific rim ABC transporter. This
model describes the photoreceptor protein (rim protein)
in eukaryotes. It is the member of ABC transporter
superfamily. Rim protein is a membrane glycoprotein which
is localized in the photoreceptor outer segment discs.
Mutation/s in its genetic loci is implicated in the
recessive Stargardt's disease [Transport and binding
proteins, Other].
Length = 2272
Score = 46.9 bits (111), Expect = 7e-06
Identities = 42/153 (27%), Positives = 73/153 (47%), Gaps = 19/153 (12%)
Query: 107 LNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSLGG------------TV 154
++ ++ITF Q+ +G GAGKT+ L I+ L +SG V +GG ++
Sbjct: 946 VDRLNITFYENQITAFLGHNGAGKTTTLSILTGLLPPTSGTVLVGGKDIETNLDAVRQSL 1005
Query: 155 SYASQEPWIF-AATIRQNILFGLPYLRRRYADV-IRVCALQDDFDSLPNGDFTVVGERGA 212
Q +F T+ ++ILF R + + + + A+ +D G E
Sbjct: 1006 GMCPQHNILFHHLTVAEHILFYAQLKGRSWEEAQLEMEAMLED-----TGLHHKRNEEAQ 1060
Query: 213 SLSGGQKARINLARAVYKNADIYLLDDPLSAVD 245
LSGG + ++++A A +A + +LD+P S VD
Sbjct: 1061 DLSGGMQRKLSVAIAFVGDAKVVVLDEPTSGVD 1093
>gnl|CDD|184593 PRK14258, PRK14258, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 261
Score = 45.8 bits (108), Expect = 7e-06
Identities = 40/165 (24%), Positives = 72/165 (43%), Gaps = 31/165 (18%)
Query: 107 LNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSLGGTVSYASQ------- 159
L VS+ ++ IIG G GK++ L LN + +V + G V + +Q
Sbjct: 23 LEGVSMEIYQSKVTAIIGPSGCGKSTFLKC-LNRMNELESEVRVEGRVEFFNQNIYERRV 81
Query: 160 --------------EPWIFAATIRQNILFGLPYLRRR---YADVIRVCALQDD--FDSLP 200
+P +F ++ N+ +G+ + R D I AL+D +D +
Sbjct: 82 NLNRLRRQVSMVHPKPNLFPMSVYDNVAYGVKIVGWRPKLEIDDIVESALKDADLWDEIK 141
Query: 201 NGDFTVVGERGASLSGGQKARINLARAVYKNADIYLLDDPLSAVD 245
+ + + LSGGQ+ R+ +ARA+ + L+D+P +D
Sbjct: 142 HK----IHKSALDLSGGQQQRLCIARALAVKPKVLLMDEPCFGLD 182
>gnl|CDD|237420 PRK13537, PRK13537, nodulation ABC transporter NodI; Provisional.
Length = 306
Score = 46.0 bits (109), Expect = 7e-06
Identities = 48/180 (26%), Positives = 81/180 (45%), Gaps = 32/180 (17%)
Query: 105 LTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSLGGT-----VSYASQ 159
L ++ +S + + ++G GAGKT+ L ++L +G +SL G +A Q
Sbjct: 21 LVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSISLCGEPVPSRARHARQ 80
Query: 160 EPWIFAA--------TIRQNIL-----FGLP--YLRRRYADVIRVCALQDDFDSLPNGDF 204
+ T+R+N+L FGL R ++ L++ D+
Sbjct: 81 RVGVVPQFDNLDPDFTVRENLLVFGRYFGLSAAAARALVPPLLEFAKLENKADA------ 134
Query: 205 TVVGERGASLSGGQKARINLARAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGCLTSG 264
VGE LSGG K R+ LARA+ + D+ +LD+P + +D +HL + + L G
Sbjct: 135 -KVGE----LSGGMKRRLTLARALVNDPDVLVLDEPTTGLDPQ-ARHLMWERLRSLLARG 188
>gnl|CDD|183044 PRK11231, fecE, iron-dicitrate transporter ATP-binding subunit;
Provisional.
Length = 255
Score = 45.8 bits (109), Expect = 7e-06
Identities = 43/161 (26%), Positives = 72/161 (44%), Gaps = 28/161 (17%)
Query: 107 LNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSLGGT--VSYASQE---- 160
LN +S++ ++ +IG G GK++LL L SG V LG +S++
Sbjct: 18 LNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPISMLSSRQLARR 77
Query: 161 ----PWIFAA----TIRQNILFGL-PYL----RRRYADVIRVC-ALQD-DFDSLPNGDFT 205
P T+R+ + +G P+L R D RV A++ + L +
Sbjct: 78 LALLPQHHLTPEGITVRELVAYGRSPWLSLWGRLSAEDNARVNQAMEQTRINHLAD---- 133
Query: 206 VVGERGASLSGGQKARINLARAVYKNADIYLLDDPLSAVDM 246
R LSGGQ+ R LA + ++ + LLD+P + +D+
Sbjct: 134 ---RRLTDLSGGQRQRAFLAMVLAQDTPVVLLDEPTTYLDI 171
>gnl|CDD|237457 PRK13647, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 274
Score = 45.9 bits (109), Expect = 7e-06
Identities = 39/163 (23%), Positives = 71/163 (43%), Gaps = 37/163 (22%)
Query: 107 LNAVSITFKPKQLACIIGAIGAGKTS-LLHIILNELRISS-GKVSLGGTVSYASQEPWI- 163
L +S++ ++G GAGK++ LLH LN + + G+V + G A E W+
Sbjct: 21 LKGLSLSIPEGSKTALLGPNGAGKSTLLLH--LNGIYLPQRGRVKVMGREVNAENEKWVR 78
Query: 164 --------------FAATIRQNILFGLPYLR-------RRYADVIRVCALQDDFDSLPNG 202
F++T+ ++ FG + RR + ++ + D D P
Sbjct: 79 SKVGLVFQDPDDQVFSSTVWDDVAFGPVNMGLDKDEVERRVEEALKAVRMWDFRDKPPY- 137
Query: 203 DFTVVGERGASLSGGQKARINLARAVYKNADIYLLDDPLSAVD 245
LS GQK R+ +A + + D+ +LD+P++ +D
Sbjct: 138 ----------HLSYGQKKRVAIAGVLAMDPDVIVLDEPMAYLD 170
>gnl|CDD|214640 smart00382, AAA, ATPases associated with a variety of cellular
activities. AAA - ATPases associated with a variety of
cellular activities. This profile/alignment only detects
a fraction of this vast family. The poorly conserved
N-terminal helix is missing from the alignment.
Length = 148
Score = 44.7 bits (105), Expect = 7e-06
Identities = 30/139 (21%), Positives = 47/139 (33%), Gaps = 38/139 (27%)
Query: 116 PKQLACIIGAIGAGKTSLLHIILNELRISSGKVSLGGTVSYASQEPWIFAATIRQNILFG 175
P ++ I+G G+GKT+L + EL G V I
Sbjct: 1 PGEVILIVGPPGSGKTTLARALARELGPPGGGV-----------------------IYID 37
Query: 176 LPYLRRRYADVIRVCALQDDFDSLPNGDFTVVGERGASLSGGQKARINLARAVYKNADIY 235
+ D + + +VG + AS SG + R+ LA A D+
Sbjct: 38 GEDILEEVLDQLLL---------------IIVGGKKASGSGELRLRLALALARKLKPDVL 82
Query: 236 LLDDPLSAVDMHVGKHLFE 254
+LD+ S +D L
Sbjct: 83 ILDEITSLLDAEQEALLLL 101
>gnl|CDD|233207 TIGR00955, 3a01204, The Eye Pigment Precursor Transporter (EPP)
Family protein. [Transport and binding proteins,
Other].
Length = 617
Score = 46.6 bits (111), Expect = 8e-06
Identities = 44/187 (23%), Positives = 78/187 (41%), Gaps = 22/187 (11%)
Query: 80 SVHSNGKGHVSLDNVTAQWSLQNADLT-LNAVSITFKPKQLACIIGAIGAGKTSLLHIIL 138
V +G + + + + L VS KP +L ++G+ GAGKT+L++ +
Sbjct: 13 RVAQDGSWKQLVSRLRGCFCRERPRKHLLKNVSGVAKPGELLAVMGSSGAGKTTLMNALA 72
Query: 139 NELR---ISSGKVSLGGTV----------SYASQ-EPWIFAATIRQNILFGLPYLR--RR 182
SG V L G +Y Q + +I T+R++++F +LR RR
Sbjct: 73 FRSPKGVKGSGSVLLNGMPIDAKEMRAISAYVQQDDLFIPTLTVREHLMF-QAHLRMPRR 131
Query: 183 YADVIRVCALQDDFD--SLPNGDFTVVGERGA--SLSGGQKARINLARAVYKNADIYLLD 238
+ + + L T +G G LSGG++ R+ A + + + D
Sbjct: 132 VTKKEKRERVDEVLQALGLRKCANTRIGVPGRVKGLSGGERKRLAFASELLTDPPLLFCD 191
Query: 239 DPLSAVD 245
+P S +D
Sbjct: 192 EPTSGLD 198
>gnl|CDD|182829 PRK10908, PRK10908, cell division protein FtsE; Provisional.
Length = 222
Score = 45.3 bits (107), Expect = 8e-06
Identities = 43/163 (26%), Positives = 68/163 (41%), Gaps = 35/163 (21%)
Query: 107 LNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSLGG---TVSYASQEPW- 162
L V+ +P ++A + G GAGK++LL +I R S+GK+ G T + P+
Sbjct: 18 LQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRLKNREVPFL 77
Query: 163 ------IFA-------ATIRQNILFGLPY-------LRRRYADVIRVCALQDDFDSLPNG 202
IF T+ N+ L +RRR + + L D + P
Sbjct: 78 RRQIGMIFQDHHLLMDRTVYDNVAIPLIIAGASGDDIRRRVSAALDKVGLLDKAKNFP-- 135
Query: 203 DFTVVGERGASLSGGQKARINLARAVYKNADIYLLDDPLSAVD 245
LSGG++ R+ +ARAV + L D+P +D
Sbjct: 136 ---------IQLSGGEQQRVGIARAVVNKPAVLLADEPTGNLD 169
>gnl|CDD|184209 PRK13650, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 279
Score = 45.5 bits (108), Expect = 9e-06
Identities = 47/179 (26%), Positives = 78/179 (43%), Gaps = 33/179 (18%)
Query: 89 VSLDNVTAQWSLQNADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKV 148
+ + N+T ++ TLN VS K + IIG G+GK++ + +I L SG++
Sbjct: 5 IEVKNLTFKYKEDQEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQI 64
Query: 149 SLGG-------------TVSYASQEP--WIFAATIRQNILFGL-----PY--LRRRYADV 186
+ G + Q P AT+ ++ FGL P+ ++ R +
Sbjct: 65 IIDGDLLTEENVWDIRHKIGMVFQNPDNQFVGATVEDDVAFGLENKGIPHEEMKERVNEA 124
Query: 187 IRVCALQDDFDSLPNGDFTVVGERGASLSGGQKARINLARAVYKNADIYLLDDPLSAVD 245
+ + +QD + P A LSGGQK R+ +A AV I +LD+ S +D
Sbjct: 125 LELVGMQDFKEREP-----------ARLSGGQKQRVAIAGAVAMRPKIIILDEATSMLD 172
>gnl|CDD|237647 PRK14248, PRK14248, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 268
Score = 45.3 bits (107), Expect = 9e-06
Identities = 45/169 (26%), Positives = 70/169 (41%), Gaps = 39/169 (23%)
Query: 107 LNAVSITFKPKQLACIIGAIGAGKTSLLHII--LNELRISSGKVS----------LGGTV 154
+N +S+ + + +IG G GK++ L I +N+L I S + L +
Sbjct: 37 VNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDL-IPSARSEGEILYEGLNILDSNI 95
Query: 155 SYAS---------QEPWIFAATIRQNILFGLPYLRRRYADVI--------RVCALQDDF- 196
+ + Q+P F +I NI L Y R V+ AL D+
Sbjct: 96 NVVNLRREIGMVFQKPNPFPKSIYNNITHALKYAGERRKSVLDEIVEESLTKAALWDEVK 155
Query: 197 DSLPNGDFTVVGERGASLSGGQKARINLARAVYKNADIYLLDDPLSAVD 245
D L SLSGGQ+ R+ +AR + + LLD+P SA+D
Sbjct: 156 DRL--------HSSALSLSGGQQQRLCIARTLAMKPAVLLLDEPASALD 196
>gnl|CDD|182569 PRK10584, PRK10584, putative ABC transporter ATP-binding protein
YbbA; Provisional.
Length = 228
Score = 45.2 bits (107), Expect = 1e-05
Identities = 45/171 (26%), Positives = 67/171 (39%), Gaps = 42/171 (24%)
Query: 107 LNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSL-GGTVSYASQEPWIFA 165
L V + K + +IG G+GK++LL I+ SSG+VSL G + +E
Sbjct: 26 LTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQMDEEA---R 82
Query: 166 ATIR-QNILF-----------------GLPYL---------RRRYADVIRVCALQDDFDS 198
A +R +++ F LP L R ++ L D
Sbjct: 83 AKLRAKHVGFVFQSFMLIPTLNALENVELPALLRGESSRQSRNGAKALLEQLGLGKRLDH 142
Query: 199 LPNGDFTVVGERGASLSGGQKARINLARAVYKNADIYLLDDPLSAVDMHVG 249
LP A LSGG++ R+ LARA D+ D+P +D G
Sbjct: 143 LP-----------AQLSGGEQQRVALARAFNGRPDVLFADEPTGNLDRQTG 182
>gnl|CDD|172757 PRK14269, PRK14269, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 246
Score = 45.0 bits (106), Expect = 1e-05
Identities = 41/162 (25%), Positives = 72/162 (44%), Gaps = 34/162 (20%)
Query: 110 VSITFKPKQLACIIGAIGAGKTSLLHII---------LNELRISSGK-------VSLGGT 153
+++ + ++ +IGA G GK++ L ++ L GK V+L
Sbjct: 21 INMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVALRKN 80
Query: 154 VSYASQEPWIFAATIRQNILFGLPYLRRRYADVIRVCALQDDFDSLPNGDFTVVG----- 208
V Q+P +F +I +NI + P L + +D+ ++L VG
Sbjct: 81 VGMVFQQPNVFVKSIYENISYA-PKLHGMIKN-------KDEEEALVVDCLQKVGLFEEV 132
Query: 209 -----ERGASLSGGQKARINLARAVYKNADIYLLDDPLSAVD 245
+ +LSGGQ+ R+ +ARA+ + LLD+P SA+D
Sbjct: 133 KDKLKQNALALSGGQQQRLCIARALAIKPKLLLLDEPTSALD 174
>gnl|CDD|183063 PRK11264, PRK11264, putative amino-acid ABC transporter ATP-binding
protein YecC; Provisional.
Length = 250
Score = 45.1 bits (107), Expect = 1e-05
Identities = 44/161 (27%), Positives = 74/161 (45%), Gaps = 25/161 (15%)
Query: 107 LNAVSITFKPKQLACIIGAIGAGKTSLLHIILNEL------RISSGKVSLGGTVSYASQE 160
L+ + + KP ++ IIG G+GKT+LL I N L I G +++ S + Q+
Sbjct: 19 LHGIDLEVKPGEVVAIIGPSGSGKTTLLRCI-NLLEQPEAGTIRVGDITIDTARSLSQQK 77
Query: 161 PWIFAATIRQNI-----LFGLPYLRRRYADVIRVCAL-----QDDFDSLPNGDFTVVGER 210
I +RQ++ F L R ++I + +++ + VG
Sbjct: 78 GLIRQ--LRQHVGFVFQNFNLFPHRTVLENIIEGPVIVKGEPKEEATARARELLAKVGLA 135
Query: 211 GAS------LSGGQKARINLARAVYKNADIYLLDDPLSAVD 245
G LSGGQ+ R+ +ARA+ ++ L D+P SA+D
Sbjct: 136 GKETSYPRRLSGGQQQRVAIARALAMRPEVILFDEPTSALD 176
>gnl|CDD|233206 TIGR00954, 3a01203, Peroxysomal Fatty Acyl CoA Transporter (FAT)
Family protei. [Transport and binding proteins,
Carbohydrates, organic alcohols, and acids].
Length = 659
Score = 45.9 bits (109), Expect = 1e-05
Identities = 39/143 (27%), Positives = 65/143 (45%), Gaps = 8/143 (5%)
Query: 122 IIGAIGAGKTSLLHIILNELRISSGKVSL--GGTVSYASQEPWIFAATIRQNILF---GL 176
I G G GK+SL I+ + G+++ G + Y Q P++ T+R I++
Sbjct: 483 ICGPNGCGKSSLFRILGELWPVYGGRLTKPAKGKLFYVPQRPYMTLGTLRDQIIYPDSSE 542
Query: 177 PYLRRRYADVIRVCALQD-DFDSL--PNGDFTVVGERGASLSGGQKARINLARAVYKNAD 233
RR +D L + + G ++ V + LSGG+K RI +AR Y
Sbjct: 543 DMKRRGLSDKDLEQILDNVQLTHILEREGGWSAVQDWMDVLSGGEKQRIAMARLFYHKPQ 602
Query: 234 IYLLDDPLSAVDMHVGKHLFEDC 256
+LD+ SAV + V +++ C
Sbjct: 603 FAILDECTSAVSVDVEGYMYRLC 625
>gnl|CDD|184132 PRK13547, hmuV, hemin importer ATP-binding subunit; Provisional.
Length = 272
Score = 45.2 bits (107), Expect = 1e-05
Identities = 44/172 (25%), Positives = 74/172 (43%), Gaps = 33/172 (19%)
Query: 107 LNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRIS--------SGKVSLGGTVSYAS 158
L +S+ +P ++ ++G GAGK++LL + +L +G V+L G A
Sbjct: 17 LRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGEPLAAI 76
Query: 159 QEPWI--------------FAATIRQNILFG-LPYLRRRYADVIRVCALQDDFDSLPNGD 203
P + FA + R+ +L G P+ RR A R + +L
Sbjct: 77 DAPRLARLRAVLPQAAQPAFAFSAREIVLLGRYPHARRAGALTHRDGEIAWQALALAGAT 136
Query: 204 FTVVGERGASLSGGQKARINLARAVYK---------NADIYLLDDPLSAVDM 246
+VG +LSGG+ AR+ AR + + LLD+P +A+D+
Sbjct: 137 -ALVGRDVTTLSGGELARVQFARVLAQLWPPHDAAQPPRYLLLDEPTAALDL 187
>gnl|CDD|184125 PRK13538, PRK13538, cytochrome c biogenesis protein CcmA;
Provisional.
Length = 204
Score = 44.4 bits (106), Expect = 1e-05
Identities = 43/156 (27%), Positives = 60/156 (38%), Gaps = 32/156 (20%)
Query: 109 AVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSLGGT------VSYASQEPW 162
+S T +L I G GAGKTSLL I+ R +G+V G Y +
Sbjct: 19 GLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPDAGEVLWQGEPIRRQRDEYHQDLLY 78
Query: 163 IFAA-------TIRQNILFGLPYLRRRYADVIRVCALQDDFDSLPNGDFTVVGERG---- 211
+ T +N+ F L D AL VG G
Sbjct: 79 LGHQPGIKTELTALENLRFYQR-LHGPGDDEALWEALAQ------------VGLAGFEDV 125
Query: 212 --ASLSGGQKARINLARAVYKNADIYLLDDPLSAVD 245
LS GQ+ R+ LAR A +++LD+P +A+D
Sbjct: 126 PVRQLSAGQQRRVALARLWLTRAPLWILDEPFTAID 161
>gnl|CDD|183055 PRK11247, ssuB, aliphatic sulfonates transport ATP-binding subunit;
Provisional.
Length = 257
Score = 44.7 bits (106), Expect = 1e-05
Identities = 45/153 (29%), Positives = 63/153 (41%), Gaps = 29/153 (18%)
Query: 107 LNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSLGGTVSYAS-------- 158
LN + + Q ++G G GK++LL + L L S L GT A
Sbjct: 28 LNQLDLHIPAGQFVAVVGRSGCGKSTLLRL-LAGLETPSAGELLAGTAPLAEAREDTRLM 86
Query: 159 -QE----PWIFAATIRQNILFGLP-YLRRRYADVIRVCALQDDFDSLPNGDFTVVGERGA 212
Q+ PW + N+ GL R + L D + P A
Sbjct: 87 FQDARLLPW---KKVIDNVGLGLKGQWRDAALQALAAVGLADRANEWP-----------A 132
Query: 213 SLSGGQKARINLARAVYKNADIYLLDDPLSAVD 245
+LSGGQK R+ LARA+ + LLD+PL A+D
Sbjct: 133 ALSGGQKQRVALARALIHRPGLLLLDEPLGALD 165
>gnl|CDD|188394 TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-binding subunit,
PQQ-dependent alcohol dehydrogenase system. Members of
this protein family are the ATP-binding subunit of an
ABC transporter system that is associated with PQQ
biosynthesis and PQQ-dependent alcohol dehydrogenases.
While this family shows homology to several efflux ABC
transporter subunits, the presence of a periplasmic
substrate-binding protein and association with systems
for catabolism of alcohols suggests a role in import
rather than detoxification [Transport and binding
proteins, Carbohydrates, organic alcohols, and acids].
Length = 236
Score = 44.2 bits (105), Expect = 2e-05
Identities = 37/158 (23%), Positives = 64/158 (40%), Gaps = 29/158 (18%)
Query: 107 LNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSLGGTVSYASQEPWIFAA 166
L+ VS T +P + ++G GAGK++L ++ G++S+ G A
Sbjct: 17 LDDVSFTVRPGRFVALLGPNGAGKSTLFSLLTRLYVAQEGQISVAG-HDLRRAPRAALAR 75
Query: 167 --------------TIRQNILF-----GLPYLRRRYADVIRVCALQDDFDSLPNGDFTVV 207
++RQN+ + GL R A R+ L D
Sbjct: 76 LGVVFQQPTLDLDLSVRQNLRYHAALHGLS---RAEARA-RIAELLARLGLAERAD---- 127
Query: 208 GERGASLSGGQKARINLARAVYKNADIYLLDDPLSAVD 245
++ L+GG + R+ +ARA+ + LLD+P +D
Sbjct: 128 -DKVRELNGGHRRRVEIARALLHRPALLLLDEPTVGLD 164
>gnl|CDD|182561 PRK10575, PRK10575, iron-hydroxamate transporter ATP-binding
subunit; Provisional.
Length = 265
Score = 44.4 bits (105), Expect = 2e-05
Identities = 41/165 (24%), Positives = 74/165 (44%), Gaps = 36/165 (21%)
Query: 107 LNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSLGGT------------- 153
L+ +S+TF ++ +IG G+GK++LL ++ S G++ L
Sbjct: 27 LHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPLESWSSKAFARK 86
Query: 154 VSYASQE-PWIFAATIRQNILFG-LPYL----------RRRYADVIRVCALQDDFDSLPN 201
V+Y Q+ P T+R+ + G P+ R + + I + L+ L +
Sbjct: 87 VAYLPQQLPAAEGMTVRELVAIGRYPWHGALGRFGAADREKVEEAISLVGLKPLAHRLVD 146
Query: 202 GDFTVVGERGASLSGGQKARINLARAVYKNADIYLLDDPLSAVDM 246
SLSGG++ R +A V +++ LLD+P SA+D+
Sbjct: 147 -----------SLSGGERQRAWIAMLVAQDSRCLLLDEPTSALDI 180
>gnl|CDD|237455 PRK13637, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 287
Score = 44.3 bits (105), Expect = 2e-05
Identities = 42/165 (25%), Positives = 70/165 (42%), Gaps = 37/165 (22%)
Query: 107 LNAVSITFKPKQLACIIGAIGAGKTSLLH------------IILNELRISSGKVSLG--- 151
L+ V+I + + +IG G+GK++L+ II++ + I+ KV L
Sbjct: 23 LDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITDKKVKLSDIR 82
Query: 152 ---GTVSYASQEPWIFAATIRQNILFGLPYL-------RRRYADVIRVCALQDDFDSLPN 201
G V + E +F TI ++I FG L R + + L
Sbjct: 83 KKVGLV-FQYPEYQLFEETIEKDIAFGPINLGLSEEEIENRVKRAMNIVGL--------- 132
Query: 202 GDFTVVGERGA-SLSGGQKARINLARAVYKNADIYLLDDPLSAVD 245
D+ ++ LSGGQK R+ +A V I +LD+P + +D
Sbjct: 133 -DYEDYKDKSPFELSGGQKRRVAIAGVVAMEPKILILDEPTAGLD 176
>gnl|CDD|182528 PRK10535, PRK10535, macrolide transporter ATP-binding /permease
protein; Provisional.
Length = 648
Score = 44.7 bits (106), Expect = 3e-05
Identities = 43/161 (26%), Positives = 75/161 (46%), Gaps = 20/161 (12%)
Query: 107 LNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSLGGTVSYASQEPWIFAA 166
L +S+ ++ I+GA G+GK++L++I+ + +SG + G A+ + A
Sbjct: 24 LKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKPTSGTYRVAGQ-DVATLDADALAQ 82
Query: 167 TIRQNILFG--------LPYLRRR--------YADVIRVCALQDDFDSLPN-GDFTVVGE 209
R++ FG L +L YA + R L + L G V
Sbjct: 83 LRREH--FGFIFQRYHLLSHLTAAQNVEVPAVYAGLERKQRLLRAQELLQRLGLEDRVEY 140
Query: 210 RGASLSGGQKARINLARAVYKNADIYLLDDPLSAVDMHVGK 250
+ + LSGGQ+ R+++ARA+ + L D+P A+D H G+
Sbjct: 141 QPSQLSGGQQQRVSIARALMNGGQVILADEPTGALDSHSGE 181
>gnl|CDD|184127 PRK13540, PRK13540, cytochrome c biogenesis protein CcmA;
Provisional.
Length = 200
Score = 43.8 bits (103), Expect = 3e-05
Identities = 41/159 (25%), Positives = 67/159 (42%), Gaps = 32/159 (20%)
Query: 105 LTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSLGGT------VSYAS 158
L +S L + G+ GAGKT+LL +I L G++ +Y
Sbjct: 15 PLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKGEILFERQSIKKDLCTYQK 74
Query: 159 Q----------EPWIFAATIRQNILFGLPYLRRRYA--DVIRVCALQDDFDSLPNGDFTV 206
Q P++ T+R+N L+ + + ++ R+ +L+ D P G
Sbjct: 75 QLCFVGHRSGINPYL---TLRENCLYDIHFSPGAVGITELCRLFSLEHLID-YPCG---- 126
Query: 207 VGERGASLSGGQKARINLARAVYKNADIYLLDDPLSAVD 245
LS GQK ++ L R A ++LLD+PL A+D
Sbjct: 127 ------LLSSGQKRQVALLRLWMSKAKLWLLDEPLVALD 159
>gnl|CDD|213184 cd03217, ABC_FeS_Assembly, ABC-type transport system involved in
Fe-S cluster assembly, ATPase component. Biosynthesis
of iron-sulfur clusters (Fe-S) depends on multi-protein
systems. The SUF system of E. coli and Erwinia
chrysanthemi is important for Fe-S biogenesis under
stressful conditions. The SUF system is made of six
proteins: SufC is an atypical cytoplasmic ABC-ATPase,
which forms a complex with SufB and SufD; SufA plays the
role of a scaffold protein for assembly of iron-sulfur
clusters and delivery to target proteins; SufS is a
cysteine desulfurase which mobilizes the sulfur atom
from cysteine and provides it to the cluster; SufE has
no associated function yet.
Length = 200
Score = 43.7 bits (104), Expect = 3e-05
Identities = 32/144 (22%), Positives = 62/144 (43%), Gaps = 26/144 (18%)
Query: 107 LNAVSITFKPKQLACIIGAIGAGKTSLLHIILN--ELRISSGKVSLGGTVSYASQEPWIF 164
L V++T K ++ ++G G+GK++L I+ + ++ G++ G
Sbjct: 16 LKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKG------------ 63
Query: 165 AATIRQNILFGLPYLRRRYADVIRVCALQD--DFDSLPNGDFTVVGERGASLSGGQKARI 222
++I P R R + A Q + + N DF + SGG+K R
Sbjct: 64 -----EDITDLPPEERARLGIFL---AFQYPPEIPGVKNADF--LRYVNEGFSGGEKKRN 113
Query: 223 NLARAVYKNADIYLLDDPLSAVDM 246
+ + + D+ +LD+P S +D+
Sbjct: 114 EILQLLLLEPDLAILDEPDSGLDI 137
>gnl|CDD|132561 TIGR03522, GldA_ABC_ATP, gliding motility-associated ABC
transporter ATP-binding subunit GldA. Members of this
protein family are exclusive to the Bacteroidetes phylum
(previously Cytophaga-Flavobacteria-Bacteroides). GldA
is an ABC transporter ATP-binding protein (pfam00005)
linked to a type of rapid surface gliding motility found
in certain Bacteroidetes, such as Flavobacterium
johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA
abolish the gliding phenotype. Gliding motility appears
closely linked to chitin utilization in the model
species Flavobacterium johnsoniae. Bacteroidetes with
members of this protein family appear to have all of the
genes associated with gliding motility.
Length = 301
Score = 44.0 bits (104), Expect = 3e-05
Identities = 40/184 (21%), Positives = 80/184 (43%), Gaps = 48/184 (26%)
Query: 89 VSLDNVTAQWSLQNADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKV 148
+ + ++T + QNA L+ VS + ++ +G GAGK++ + II L SG V
Sbjct: 3 IRVSSLTKLYGTQNA---LDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPDSGSV 59
Query: 149 SLGG-TVSYASQEPWIFAATIRQNI------------------------LFGLP--YLRR 181
+ G V +E +++NI ++G+ L++
Sbjct: 60 QVCGEDVLQNPKE-------VQRNIGYLPEHNPLYLDMYVREYLQFIAGIYGMKGQLLKQ 112
Query: 182 RYADVIRVCALQDDFDSLPNGDFTVVGERGASLSGGQKARINLARAVYKNADIYLLDDPL 241
R ++I + L+ + +G+ LS G + R+ LA+A+ + + +LD+P
Sbjct: 113 RVEEMIELVGLRPE-------QHKKIGQ----LSKGYRQRVGLAQALIHDPKVLILDEPT 161
Query: 242 SAVD 245
+ +D
Sbjct: 162 TGLD 165
>gnl|CDD|237452 PRK13632, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 271
Score = 44.2 bits (105), Expect = 3e-05
Identities = 41/175 (23%), Positives = 78/175 (44%), Gaps = 26/175 (14%)
Query: 89 VSLDNVTAQWSLQNADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKV 148
+ ++NV+ + + + L VS + I+G G+GK+++ I+ L+ SG++
Sbjct: 8 IKVENVSFSYP-NSENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEI 66
Query: 149 SLGG-TVSYAS------------QEP--WIFAATIRQNILFGLP---YLRRRYADVIRVC 190
+ G T+S + Q P AT+ +I FGL ++ D+I
Sbjct: 67 KIDGITISKENLKEIRKKIGIIFQNPDNQFIGATVEDDIAFGLENKKVPPKKMKDIIDDL 126
Query: 191 ALQDDFDSLPNGDFTVVGERGASLSGGQKARINLARAVYKNADIYLLDDPLSAVD 245
A + + + + +LSGGQK R+ +A + N +I + D+ S +D
Sbjct: 127 AKKVGMEDY-------LDKEPQNLSGGQKQRVAIASVLALNPEIIIFDESTSMLD 174
>gnl|CDD|236992 PRK11819, PRK11819, putative ABC transporter ATP-binding protein;
Reviewed.
Length = 556
Score = 44.7 bits (107), Expect = 3e-05
Identities = 39/141 (27%), Positives = 65/141 (46%), Gaps = 45/141 (31%)
Query: 122 IIGAIGAGKTSLLHIILNELRISSGKVSLGGTV--SYASQ-----EPWIFAATIRQNILF 174
IIG GAGK++L +I + + SG + +G TV +Y Q +P T+ + I
Sbjct: 355 IIGPNGAGKSTLFKMITGQEQPDSGTIKIGETVKLAYVDQSRDALDP---NKTVWEEISG 411
Query: 175 GLPYLRRRYADVIRVCALQDDFDSLPNGDFTV-----VGE---RGA-------SLSGGQK 219
GL D+I+V G+ + VG +G LSGG++
Sbjct: 412 GL--------DIIKV------------GNREIPSRAYVGRFNFKGGDQQKKVGVLSGGER 451
Query: 220 ARINLARAVYKNADIYLLDDP 240
R++LA+ + + ++ LLD+P
Sbjct: 452 NRLHLAKTLKQGGNVLLLDEP 472
Score = 41.3 bits (98), Expect = 3e-04
Identities = 41/158 (25%), Positives = 64/158 (40%), Gaps = 44/158 (27%)
Query: 122 IIGAIGAGKTSLLHIILNELRISSGKVSL--GGTVSYASQEPWIFAA-TIRQNILFGLPY 178
++G GAGK++LL I+ + G+ G V Y QEP + T+R+N+ G+
Sbjct: 38 VLGLNGAGKSTLLRIMAGVDKEFEGEARPAPGIKVGYLPQEPQLDPEKTVRENVEEGVAE 97
Query: 179 LRR----------RYADVI--------RVCALQD--------DFDS----------LPNG 202
++ YA+ LQ+ D DS P
Sbjct: 98 VKAALDRFNEIYAAYAEPDADFDALAAEQGELQEIIDAADAWDLDSQLEIAMDALRCPPW 157
Query: 203 DFTVVGERGASLSGGQKARINLARAVYKNADIYLLDDP 240
D V LSGG++ R+ L R + + D+ LLD+P
Sbjct: 158 DAKV-----TKLSGGERRRVALCRLLLEKPDMLLLDEP 190
>gnl|CDD|131266 TIGR02211, LolD_lipo_ex, lipoprotein releasing system, ATP-binding
protein. This model represents LolD, a member of the
ABC transporter family (pfam00005). LolD is involved in
localization of lipoproteins in some bacteria. It works
with a transmembrane protein LolC, which in some species
is a paralogous pair LolC and LolE. Depending on whether
the residue immediately following the new, modified
N-terminal Cys residue, the nascent lipoprotein may be
carried further by LolA and LolB to the outer membrane,
or remain at the inner membrane. The top scoring
proteins excluded by this model include homologs from
the archaeal genus Methanosarcina [Protein fate, Protein
and peptide secretion and trafficking].
Length = 221
Score = 43.5 bits (103), Expect = 3e-05
Identities = 44/177 (24%), Positives = 75/177 (42%), Gaps = 42/177 (23%)
Query: 106 TLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSLGG-TVSYASQEPWIF 164
L VS++ ++ I+G+ G+GK++LLH++ +SG+V G ++S S
Sbjct: 20 VLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGEVLFNGQSLSKLSSNE--- 76
Query: 165 AATIRQNILFGLPYLRRRYADVI-RVCALQDDFDSLPN-------GDFTV---------- 206
LR + I + L DF +L N G +V
Sbjct: 77 -----------RAKLRNKKLGFIYQFHHLLPDFTALENVAMPLLIGKKSVKEAKERAYEM 125
Query: 207 ---VG------ERGASLSGGQKARINLARAVYKNADIYLLDDPLSAVDMHVGKHLFE 254
VG R + LSGG++ R+ +ARA+ + L D+P +D + K +F+
Sbjct: 126 LEKVGLEHRINHRPSELSGGERQRVAIARALVNQPSLVLADEPTGNLDNNNAKIIFD 182
>gnl|CDD|130256 TIGR01188, drrA, daunorubicin resistance ABC transporter
ATP-binding subunit. This model describes daunorubicin
resistance ABC transporter, ATP binding subunit in
bacteria and archaea. This model is restricted in its
scope to preferentially recognize the ATP binding
subunit associated with effux of the drug, daunorubicin.
This transport system belong to the larger ATP-Binding
Cassette (ABC) transporter superfamily. The
characteristic feature of these transporter is the
obligatory coupling of ATP hydrolysis to substrate
translocation. The minimal configuration of bacterial
ABC transport system: an ATPase or ATP binding subunit;
An integral membrane protein; a hydrophilic polypetpide,
which likely functions as substrate binding protein. In
eukaryotes proteins of similar function include p-gyco
proteins, multidrug resistance protein etc [Transport
and binding proteins, Other].
Length = 302
Score = 43.9 bits (104), Expect = 3e-05
Identities = 34/144 (23%), Positives = 63/144 (43%), Gaps = 31/144 (21%)
Query: 122 IIGAIGAGKTSLLHIILNELRISSGKVSLGG------------TVSYASQEPWIFAA-TI 168
+G GAGKT+ + ++ LR +SG + G ++ Q + T
Sbjct: 24 FLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVREPRKVRRSIGIVPQYASVDEDLTG 83
Query: 169 RQNI-----LFGLPY--LRRRYADVIRVCALQDDFDSLPNGDFTVVGERGASLSGGQKAR 221
R+N+ L+GLP R +++ + L + D VG + SGG + R
Sbjct: 84 RENLEMMGRLYGLPKDEAEERAEELLELFELGEAADRP-------VG----TYSGGMRRR 132
Query: 222 INLARAVYKNADIYLLDDPLSAVD 245
+++A ++ D+ LD+P + +D
Sbjct: 133 LDIAASLIHQPDVLFLDEPTTGLD 156
>gnl|CDD|184129 PRK13543, PRK13543, cytochrome c biogenesis protein CcmA;
Provisional.
Length = 214
Score = 43.3 bits (102), Expect = 4e-05
Identities = 44/151 (29%), Positives = 66/151 (43%), Gaps = 17/151 (11%)
Query: 124 GAIGAGKTSLLHIILNELRISSGKVSLGGTVSYASQEPWIFAATIRQNILFGLPYLRRRY 183
G GAGKT+LL ++ L + SG++ + G + A L LP L+
Sbjct: 44 GDNGAGKTTLLRVLAGLLHVESGQIQIDGKTATRGDRSRFMA------YLGHLPGLKADL 97
Query: 184 A---DVIRVCALQD-DFDSLPNGDFTVVGERGAS------LSGGQKARINLARAVYKNAD 233
+ ++ +C L +P +VG G LS GQK R+ LAR A
Sbjct: 98 STLENLHFLCGLHGRRAKQMPGSALAIVGLAGYEDTLVRQLSAGQKKRLALARLWLSPAP 157
Query: 234 IYLLDDPLSAVDMHVGKHLFEDCISGCLTSG 264
++LLD+P + +D+ G L IS L G
Sbjct: 158 LWLLDEPYANLDLE-GITLVNRMISAHLRGG 187
>gnl|CDD|184584 PRK14238, PRK14238, phosphate transporter ATP-binding protein;
Provisional.
Length = 271
Score = 43.7 bits (103), Expect = 4e-05
Identities = 45/205 (21%), Positives = 80/205 (39%), Gaps = 45/205 (21%)
Query: 77 KINSVHSNGKGHVSLDNVTAQWSLQNADL------TLNAVSITFKPKQLACIIGAIGAGK 130
+ +V + + + QN +L L +++ ++ IIG G GK
Sbjct: 4 TVVNVQVKNEEKIETAPKKVVFDTQNLNLWYGEDHALKNINLDIHENEVTAIIGPSGCGK 63
Query: 131 TSLLH-----------------IILNELRISSGKVS---LGGTVSYASQEPWIFAATIRQ 170
++ + I+ + I S L V Q+P F +I
Sbjct: 64 STYIKTLNRMVELVPSVKTTGKILYRDQNIFDKSYSVEELRTNVGMVFQKPNPFPKSIYD 123
Query: 171 NILFGLPYLR----RRYADVI-----RVCALQDDF-DSLPNGDFTVVGERGASLSGGQKA 220
N+ +G P + ++ D I R A+ D+ D L + + LSGGQ+
Sbjct: 124 NVTYG-PKIHGIKDKKTLDEIVEKSLRGAAIWDELKDRLHDNAY--------GLSGGQQQ 174
Query: 221 RINLARAVYKNADIYLLDDPLSAVD 245
R+ +AR + D+ L+D+P SA+D
Sbjct: 175 RLCIARCLAIEPDVILMDEPTSALD 199
>gnl|CDD|224166 COG1245, COG1245, Predicted ATPase, RNase L inhibitor (RLI) homolog
[General function prediction only].
Length = 591
Score = 44.2 bits (105), Expect = 4e-05
Identities = 33/135 (24%), Positives = 61/135 (45%), Gaps = 27/135 (20%)
Query: 122 IIGAIGA---GKTSLLHIILNELRISSGKVSLGGTVSYASQ--EPWIFAATIRQNIL--- 173
+IG +G GKT+ + ++ ++ G VSY Q P + T+ +
Sbjct: 369 VIGILGPNGIGKTTFVKLLAGVIKPDEGSEE-DLKVSYKPQYISP-DYDGTVEDLLRSAI 426
Query: 174 ---FGLPYLRRRYADVIRVCALQDDFDSLPNGDFTVVGERGASLSGGQKARINLARAVYK 230
FG Y + ++++ L+D + + LSGG+ R+ +A A+ +
Sbjct: 427 RSAFGSSYFK---TEIVKPLNLEDLLERPVDE-----------LSGGELQRVAIAAALSR 472
Query: 231 NADIYLLDDPLSAVD 245
AD+YLLD+P + +D
Sbjct: 473 EADLYLLDEPSAYLD 487
Score = 36.9 bits (86), Expect = 0.009
Identities = 42/161 (26%), Positives = 66/161 (40%), Gaps = 39/161 (24%)
Query: 113 TFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSLGGTVSYASQEPWI--FAATIRQ 170
T +P ++ I+G G GK++ L I+ EL K +LG S + I F T Q
Sbjct: 96 TPRPGKVVGILGPNGIGKSTALKILAGEL-----KPNLGRYEDPPSWDEVIKRFRGTELQ 150
Query: 171 NILFGLPYLRRRYADVIRVCALQDDFDSLP----------------NGDF---------- 204
N Y ++ Y +R D +P G F
Sbjct: 151 N------YFKKLYEGELRAVHKPQYVDLIPKVVKGKVGELLKKVDERGKFDEVVERLGLE 204
Query: 205 TVVGERGASLSGGQKARINLARAVYKNADIYLLDDPLSAVD 245
V+ + LSGG+ R+ +A A+ ++AD+Y D+P S +D
Sbjct: 205 NVLDRDVSELSGGELQRVAIAAALLRDADVYFFDEPSSYLD 245
>gnl|CDD|185067 PRK15112, PRK15112, antimicrobial peptide ABC system ATP-binding
protein SapF; Provisional.
Length = 267
Score = 43.2 bits (102), Expect = 5e-05
Identities = 40/162 (24%), Positives = 68/162 (41%), Gaps = 36/162 (22%)
Query: 110 VSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSLG------GTVSYASQE-PW 162
+S T + Q IIG G+GK++L ++ + +SG++ + G SY SQ
Sbjct: 32 LSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGELLIDDHPLHFGDYSYRSQRIRM 91
Query: 163 IF-----AATIRQNI--LFGLPYL-----------RRRYADVIRVCALQDDFDSLPNGDF 204
IF + RQ I + P ++ + +V L D P+
Sbjct: 92 IFQDPSTSLNPRQRISQILDFPLRLNTDLEPEQREKQIIETLRQVGLLPDHASYYPH--- 148
Query: 205 TVVGERGASLSGGQKARINLARAVYKNADIYLLDDPLSAVDM 246
L+ GQK R+ LARA+ + + D+ L+++DM
Sbjct: 149 --------MLAPGQKQRLGLARALILRPKVIIADEALASLDM 182
>gnl|CDD|182221 PRK10070, PRK10070, glycine betaine transporter ATP-binding
subunit; Provisional.
Length = 400
Score = 43.5 bits (102), Expect = 6e-05
Identities = 45/204 (22%), Positives = 85/204 (41%), Gaps = 43/204 (21%)
Query: 67 FLLLGEHEPRKINSVHSNGKGHVSLDNVTAQWSLQNADLTLNAVSITFKPKQLACIIGAI 126
+ + GEH R + L+ +++A S+ + ++ I+G
Sbjct: 11 YKIFGEHPQRAFKYIEQGLSKEQILEKTGLSLGVKDA-------SLAIEEGEIFVIMGLS 63
Query: 127 GAGKTSLLHIILNELRISSGKVSLGGT----VSYAS-------QEPWIFAA-------TI 168
G+GK++++ ++ + + G+V + G +S A + +F + T+
Sbjct: 64 GSGKSTMVRLLNRLIEPTRGQVLIDGVDIAKISDAELREVRRKKIAMVFQSFALMPHMTV 123
Query: 169 RQNILFGLPYL-------RRRYADVIRVCALQDDFDSLPNGDFTVVGERGASLSGGQKAR 221
N FG+ R + D +R L++ S P+ LSGG + R
Sbjct: 124 LDNTAFGMELAGINAEERREKALDALRQVGLENYAHSYPD-----------ELSGGMRQR 172
Query: 222 INLARAVYKNADIYLLDDPLSAVD 245
+ LARA+ N DI L+D+ SA+D
Sbjct: 173 VGLARALAINPDILLMDEAFSALD 196
>gnl|CDD|184037 PRK13409, PRK13409, putative ATPase RIL; Provisional.
Length = 590
Score = 43.6 bits (104), Expect = 7e-05
Identities = 35/132 (26%), Positives = 58/132 (43%), Gaps = 29/132 (21%)
Query: 122 IIGAIGAGKTSLLHIILNELRISSGKVSLGGTVSYASQ----------EPWIFAATIRQN 171
I+G G GKT+ ++ L+ G+V +SY Q E + + T
Sbjct: 370 IVGPNGIGKTTFAKLLAGVLKPDEGEVDPELKISYKPQYIKPDYDGTVEDLLRSITDD-- 427
Query: 172 ILFGLPYLRRRYADVIRVCALQDDFDSLPNGDFTVVGERGASLSGGQKARINLARAVYKN 231
G Y +++I+ L+ D V + LSGG+ R+ +A + ++
Sbjct: 428 --LGSSYY---KSEIIKPLQLERLLDKN-------VKD----LSGGELQRVAIAACLSRD 471
Query: 232 ADIYLLDDPLSA 243
AD+YLLD+P SA
Sbjct: 472 ADLYLLDEP-SA 482
Score = 37.1 bits (87), Expect = 0.007
Identities = 42/154 (27%), Positives = 61/154 (39%), Gaps = 43/154 (27%)
Query: 122 IIGAIGAGKTSLLHIILNELRISSGKVSLGGTVSYASQEPWI--FAATIRQNILFGLPYL 179
I+G G GKT+ + I+ EL +LG S + + F T QN Y
Sbjct: 104 ILGPNGIGKTTAVKILSGEL-----IPNLGDYEEEPSWDEVLKRFRGTELQN------YF 152
Query: 180 RRRYADVIRVCALQDDFDSLP---NGDFTV------VGERGA------------------ 212
++ Y I+V D +P G V V ERG
Sbjct: 153 KKLYNGEIKVVHKPQYVDLIPKVFKG--KVRELLKKVDERGKLDEVVERLGLENILDRDI 210
Query: 213 -SLSGGQKARINLARAVYKNADIYLLDDPLSAVD 245
LSGG+ R+ +A A+ ++AD Y D+P S +D
Sbjct: 211 SELSGGELQRVAIAAALLRDADFYFFDEPTSYLD 244
>gnl|CDD|236863 PRK11153, metN, DL-methionine transporter ATP-binding subunit;
Provisional.
Length = 343
Score = 43.3 bits (103), Expect = 7e-05
Identities = 48/164 (29%), Positives = 76/164 (46%), Gaps = 37/164 (22%)
Query: 107 LNAVSITFKPKQLACIIGAIGAGKTSLLHIILNEL-RISSGKVSLGGT--VSYASQE--- 160
LN VS+ ++ +IGA GAGK++L+ I N L R +SG+V + G + + +E
Sbjct: 21 LNNVSLHIPAGEIFGVIGASGAGKSTLIRCI-NLLERPTSGRVLVDGQDLTALSEKELRK 79
Query: 161 -----PWIF-------AATIRQNILFGL-------PYLRRRYADVIRVCALQDDFDSLPN 201
IF + T+ N+ L ++ R +++ + L D D P
Sbjct: 80 ARRQIGMIFQHFNLLSSRTVFDNVALPLELAGTPKAEIKARVTELLELVGLSDKADRYP- 138
Query: 202 GDFTVVGERGASLSGGQKARINLARAVYKNADIYLLDDPLSAVD 245
A LSGGQK R+ +ARA+ N + L D+ SA+D
Sbjct: 139 ----------AQLSGGQKQRVAIARALASNPKVLLCDEATSALD 172
>gnl|CDD|130355 TIGR01288, nodI, ATP-binding ABC transporter family nodulation
protein NodI. This protein is required for normal
nodulation by nitrogen-fixing root nodule bacteria such
as Mesorhizobium loti. It is a member of the family of
ABC transporter ATP binding proteins and works with NodJ
to export a nodulation signal molecule. This model does
not recognize the highly divergent NodI from
Azorhizobium caulinodans [Cellular processes, Other,
Transport and binding proteins, Other].
Length = 303
Score = 43.0 bits (101), Expect = 7e-05
Identities = 45/176 (25%), Positives = 80/176 (45%), Gaps = 24/176 (13%)
Query: 105 LTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVS-LG------------ 151
+ +N +S T + ++G GAGK+++ ++L + GK++ LG
Sbjct: 18 VVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPDRGKITVLGEPVPSRARLARV 77
Query: 152 --GTVS-YASQEPWIFAATIRQNILFGLPYLRRRYADVIRVCALQDDFDSLPNGDFTVVG 208
G V + + +P T+R+N+L Y ++ V +F L + V
Sbjct: 78 AIGVVPQFDNLDPEF---TVRENLLVFGRYFGMSTREIEAVIPSLLEFARLESKADVRV- 133
Query: 209 ERGASLSGGQKARINLARAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGCLTSG 264
A LSGG K R+ LARA+ + + +LD+P + +D H +HL + + L G
Sbjct: 134 ---ALLSGGMKRRLTLARALINDPQLLILDEPTTGLDPH-ARHLIWERLRSLLARG 185
>gnl|CDD|172756 PRK14268, PRK14268, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 258
Score = 42.7 bits (100), Expect = 7e-05
Identities = 50/194 (25%), Positives = 82/194 (42%), Gaps = 41/194 (21%)
Query: 81 VHSNGKGHVSLDNVTAQWSLQNADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHII--L 138
V + + + ++N+ + + A L VS+ + +IG G GK++ + + +
Sbjct: 5 VQNVAQPQIKVENLNLWYGEKQA---LKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRM 61
Query: 139 NEL----RISSGKVSLGGTVSYAS---------------QEPWIFAATIRQNILFGLPYL 179
N+L RI GKVS+ G Y Q+P F +I N+ +G
Sbjct: 62 NDLIKNCRIE-GKVSIEGEDIYEPDVDVVELRKNVGMVFQKPNPFPMSIYDNVAYGPRIH 120
Query: 180 RRRYADV-------IRVCALQDDF-DSLPNGDFTVVGERGASLSGGQKARINLARAVYKN 231
D+ +R AL D+ D L + SLSGGQ+ R+ +AR +
Sbjct: 121 GANKKDLDGVVENALRSAALWDETSDRLKS--------PALSLSGGQQQRLCIARTLAVK 172
Query: 232 ADIYLLDDPLSAVD 245
I L D+P SA+D
Sbjct: 173 PKIILFDEPTSALD 186
>gnl|CDD|237451 PRK13631, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 320
Score = 42.9 bits (101), Expect = 8e-05
Identities = 45/180 (25%), Positives = 72/180 (40%), Gaps = 54/180 (30%)
Query: 107 LNAVSITFKPKQLACIIGAIGAGKTSLL-HIILNELRISS-GKVSLGG------------ 152
LN +S TF+ ++ IIG G+GK++L+ H N L S G + +G
Sbjct: 42 LNNISYTFEKNKIYFIIGNSGSGKSTLVTH--FNGLIKSKYGTIQVGDIYIGDKKNNHEL 99
Query: 153 -----------------TVSYASQEP--WIFAATIRQNILFGLPYL-------RRRYADV 186
VS Q P +F TI ++I+FG L ++
Sbjct: 100 ITNPYSKKIKNFKELRRRVSMVFQFPEYQLFKDTIEKDIMFGPVALGVKKSEAKKLAKFY 159
Query: 187 IRVCALQDDF-DSLPNGDFTVVGERGASLSGGQKARINLARAVYKNADIYLLDDPLSAVD 245
+ L D + + P G LSGGQK R+ +A + +I + D+P + +D
Sbjct: 160 LNKMGLDDSYLERSPFG-----------LSGGQKRRVAIAGILAIQPEILIFDEPTAGLD 208
>gnl|CDD|236729 PRK10636, PRK10636, putative ABC transporter ATP-binding protein;
Provisional.
Length = 638
Score = 43.2 bits (102), Expect = 8e-05
Identities = 44/166 (26%), Positives = 74/166 (44%), Gaps = 28/166 (16%)
Query: 105 LTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSL--GGTVSYASQEPW 162
+ L+++ + P ++G GAGK++L+ ++ EL SG++ L G + Y +Q
Sbjct: 326 IILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELAPVSGEIGLAKGIKLGYFAQHQ- 384
Query: 163 IFAATIRQNILFGLPYLR---------RRYADVIRVCALQDDFDSLP-NGDFTVVGERGA 212
L +LR R A L+D GD V E
Sbjct: 385 -------------LEFLRADESPLQHLARLAPQELEQKLRDYLGGFGFQGD--KVTEETR 429
Query: 213 SLSGGQKARINLARAVYKNADIYLLDDPLSAVDMHVGKHLFEDCIS 258
SGG+KAR+ LA V++ ++ LLD+P + +D+ + + L E I
Sbjct: 430 RFSGGEKARLVLALIVWQRPNLLLLDEPTNHLDLDMRQALTEALID 475
Score = 41.3 bits (97), Expect = 4e-04
Identities = 42/173 (24%), Positives = 71/173 (41%), Gaps = 33/173 (19%)
Query: 100 LQNADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSLGGTVSYA-- 157
L NA T+N P Q ++G G GK++LL ++ NE+ G + G A
Sbjct: 17 LDNATATIN-------PGQKVGLVGKNGCGKSTLLALLKNEISADGGSYTFPGNWQLAWV 69
Query: 158 SQEPWIFAATIRQNILFGLPYLRRRYA---------------------DVIRVCALQDDF 196
+QE + ++ G R+ A D I ++
Sbjct: 70 NQETPALPQPALEYVIDGDREYRQLEAQLHDANERNDGHAIATIHGKLDAIDAWTIRSRA 129
Query: 197 DSLPNG---DFTVVGERGASLSGGQKARINLARAVYKNADIYLLDDPLSAVDM 246
SL +G + + SGG + R+NLA+A+ +D+ LLD+P + +D+
Sbjct: 130 ASLLHGLGFSNEQLERPVSDFSGGWRMRLNLAQALICRSDLLLLDEPTNHLDL 182
>gnl|CDD|172760 PRK14272, PRK14272, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 252
Score = 42.7 bits (100), Expect = 9e-05
Identities = 44/166 (26%), Positives = 73/166 (43%), Gaps = 38/166 (22%)
Query: 110 VSITFKPKQLACIIGAIGAGKTSLLHII--LNEL----RISSGKVSLGGTVSYAS----- 158
V++ + + +IG G GKT+ L I +++L R++ G++ L G Y
Sbjct: 23 VNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVT-GRILLDGQDIYGPRVDPV 81
Query: 159 ----------QEPWIFAA-TIRQNILFGLPYL----RRRYADV----IRVCALQDDFDSL 199
Q+P F ++ N++ GL R +V +R AL D+
Sbjct: 82 AMRRRVGMVFQKPNPFPTMSVFDNVVAGLKLAGIRDRDHLMEVAERSLRGAALWDEVKDR 141
Query: 200 PNGDFTVVGERGASLSGGQKARINLARAVYKNADIYLLDDPLSAVD 245
T LSGGQ+ R+ +ARA+ +I L+D+P SA+D
Sbjct: 142 LKTPAT-------GLSGGQQQRLCIARALAVEPEILLMDEPTSALD 180
>gnl|CDD|181939 PRK09544, znuC, high-affinity zinc transporter ATPase; Reviewed.
Length = 251
Score = 42.4 bits (100), Expect = 9e-05
Identities = 42/174 (24%), Positives = 77/174 (44%), Gaps = 41/174 (23%)
Query: 89 VSLDNVTAQWSLQNADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKV 148
VSL+NV+ + + L+ VS+ KP ++ ++G GAGK++L+ ++L + G +
Sbjct: 5 VSLENVSVSFGQRR---VLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVI 61
Query: 149 --SLGGTVSYASQEPWIFA--------------ATIRQNILFGLPYLRRRYADVIRVCAL 192
+ + Y Q+ ++ T +++I LP L+R A + +
Sbjct: 62 KRNGKLRIGYVPQKLYLDTTLPLTVNRFLRLRPGTKKEDI---LPALKRVQAGHLIDAPM 118
Query: 193 QDDFDSLPNGDFTVVGERGASLSGGQKARINLARAVYKNADIYLLDDPLSAVDM 246
Q LSGG+ R+ LARA+ + +LD+P VD+
Sbjct: 119 Q-------------------KLSGGETQRVLLARALLNRPQLLVLDEPTQGVDV 153
>gnl|CDD|163452 TIGR03740, galliderm_ABC, gallidermin-class lantibiotic protection
ABC transporter, ATP-binding subunit. Model TIGR03731
represents the family of all lantibiotics related to
gallidermin, including epidermin, mutatin, and nisin.
This protein family describes the ATP-binding subunit of
a gallidermin/epidermin class lantibiotic protection
transporter. It is largely restricted to
gallidermin-family lantibiotic biosynthesis and export
cassettes, but also occurs in orphan transporter
cassettes in species that lack candidate lantibiotic
precursor and synthetase genes.
Length = 223
Score = 42.4 bits (100), Expect = 9e-05
Identities = 41/168 (24%), Positives = 76/168 (45%), Gaps = 31/168 (18%)
Query: 93 NVTAQWSLQNADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSLGG 152
N++ ++ Q A +N +S+T + ++G GAGK++LL +I LR +SG++ G
Sbjct: 5 NLSKRFGKQTA---VNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPTSGEIIFDG 61
Query: 153 ---------TVSYASQEPWIFA-ATIRQNI-----LFGLPYLRRRYADVIRVCALQDDFD 197
+ + P ++ T R+N+ L GLP R +V+ + L +
Sbjct: 62 HPWTRKDLHKIGSLIESPPLYENLTARENLKVHTTLLGLPD--SRIDEVLNIVDLTNTGK 119
Query: 198 SLPNGDFTVVGERGASLSGGQKARINLARAVYKNADIYLLDDPLSAVD 245
F S G K R+ +A A+ + + +LD+P + +D
Sbjct: 120 K-KAKQF----------SLGMKQRLGIAIALLNHPKLLILDEPTNGLD 156
>gnl|CDD|184596 PRK14267, PRK14267, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 253
Score = 42.1 bits (99), Expect = 1e-04
Identities = 41/154 (26%), Positives = 64/154 (41%), Gaps = 37/154 (24%)
Query: 122 IIGAIGAGKTSLLH-----IILNELRISSGKVSLGGTVSYAS---------------QEP 161
++G G GK++LL + LNE G+V L G Y+ Q P
Sbjct: 35 LMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSPDVDPIEVRREVGMVFQYP 94
Query: 162 WIFA-ATIRQNILFGLPY---------LRRRYADVIRVCALQDDFDSLPNGDFTVVGERG 211
F TI N+ G+ L R ++ AL D+ N +
Sbjct: 95 NPFPHLTIYDNVAIGVKLNGLVKSKKELDERVEWALKKAALWDEVKDRLN-------DYP 147
Query: 212 ASLSGGQKARINLARAVYKNADIYLLDDPLSAVD 245
++LSGGQ+ R+ +ARA+ I L+D+P + +D
Sbjct: 148 SNLSGGQRQRLVIARALAMKPKILLMDEPTANID 181
>gnl|CDD|225265 COG2401, COG2401, ABC-type ATPase fused to a predicted
acetyltransferase domain [General function prediction
only].
Length = 593
Score = 42.9 bits (101), Expect = 1e-04
Identities = 40/163 (24%), Positives = 66/163 (40%), Gaps = 42/163 (25%)
Query: 107 LNAVSITFKPKQLACIIGAIGAGKTSLLHIILNE--------LRISSGKVSLGGTVSYAS 158
L +++ KP + ++G GAGKT+LL +IL R SGKV + + ++
Sbjct: 399 LRNLNLEIKPGDVVAVVGQSGAGKTTLLRMILGAQKGRGEEKYRPDSGKVEV-PKNTVSA 457
Query: 159 QEPWIFAATIRQNILFGLPYLRRRYADVIRVCALQDDFDSLPNGDFTVVGERGAS----- 213
P + + + L +LR + D N ++ G S
Sbjct: 458 LIPGEYEPEFGEVTI--LEHLRSKTGD--------------LNAAVEILNRAGLSDAVLY 501
Query: 214 ------LSGGQKARINLARAVYKNADIYLLD------DPLSAV 244
LS GQK R LA+ + + ++ L+D D L+AV
Sbjct: 502 RRKFSELSTGQKERAKLAKLLAERPNVLLIDEFAAHLDELTAV 544
>gnl|CDD|172734 PRK14246, PRK14246, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 257
Score = 42.3 bits (99), Expect = 1e-04
Identities = 43/191 (22%), Positives = 80/191 (41%), Gaps = 37/191 (19%)
Query: 85 GKGHVSLDNVTAQWSLQNADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRIS 144
GK + N++ + N L ++I + I+G G+GK++LL ++ + I
Sbjct: 4 GKSAEDVFNISRLYLYINDKAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIY 63
Query: 145 SGKVSLGGTVSYAS-------------------QEPWIFA-ATIRQNILFGLPY------ 178
K+ + G V Y Q+P F +I NI + L
Sbjct: 64 DSKIKVDGKVLYFGKDIFQIDAIKLRKEVGMVFQQPNPFPHLSIYDNIAYPLKSHGIKEK 123
Query: 179 --LRRRYADVIRVCAL-QDDFDSLPNGDFTVVGERGASLSGGQKARINLARAVYKNADIY 235
+++ + +R L ++ +D L + LSGGQ+ R+ +ARA+ +
Sbjct: 124 REIKKIVEECLRKVGLWKEVYDRL--------NSPASQLSGGQQQRLTIARALALKPKVL 175
Query: 236 LLDDPLSAVDM 246
L+D+P S +D+
Sbjct: 176 LMDEPTSMIDI 186
>gnl|CDD|172761 PRK14273, PRK14273, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 254
Score = 41.9 bits (98), Expect = 1e-04
Identities = 41/165 (24%), Positives = 74/165 (44%), Gaps = 31/165 (18%)
Query: 107 LNAVSITFKPKQLACIIGAIGAGKTSLLHII--LNEL----RISSGKVSLGGTVSYAS-- 158
LN ++I + +IG G GK++ L + +N+L +I G V G Y++
Sbjct: 23 LNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIE-GNVIYEGKNIYSNNF 81
Query: 159 -------------QEPWIFAATIRQNILFGLPYL-----RRRYADVIRVCALQDDFDSLP 200
Q P F +I NI +G P + +++ +++ + +L
Sbjct: 82 DILELRRKIGMVFQTPNPFLMSIYDNISYG-PKIHGTKDKKKLDEIVEQSLKKS---ALW 137
Query: 201 NGDFTVVGERGASLSGGQKARINLARAVYKNADIYLLDDPLSAVD 245
N + SLSGGQ+ R+ +AR + ++ L+D+P SA+D
Sbjct: 138 NEVKDKLNTNALSLSGGQQQRLCIARTLAIEPNVILMDEPTSALD 182
>gnl|CDD|215558 PLN03073, PLN03073, ABC transporter F family; Provisional.
Length = 718
Score = 42.5 bits (100), Expect = 1e-04
Identities = 40/136 (29%), Positives = 62/136 (45%), Gaps = 26/136 (19%)
Query: 122 IIGAIGAGKTSLLHIILNELRISSGKVSLGGTVSYASQEPWIFAATIRQNILFGLP---- 177
++G G GK+++L +I EL+ SSG V + + A Q+ + GL
Sbjct: 540 MVGPNGIGKSTILKLISGELQPSSGTVF---------RSAKVRMAVFSQHHVDGLDLSSN 590
Query: 178 ---YLRRRYADVIRVCALQDDFDSLPNGDFTVVGERGA----SLSGGQKARINLARAVYK 230
Y+ R + V Q L G F V G +LSGGQK+R+ A+ +K
Sbjct: 591 PLLYMMRCFPGVPE----QKLRAHL--GSFGVTGNLALQPMYTLSGGQKSRVAFAKITFK 644
Query: 231 NADIYLLDDPLSAVDM 246
I LLD+P + +D+
Sbjct: 645 KPHILLLDEPSNHLDL 660
Score = 40.2 bits (94), Expect = 0.001
Identities = 16/35 (45%), Positives = 25/35 (71%)
Query: 213 SLSGGQKARINLARAVYKNADIYLLDDPLSAVDMH 247
+ SGG + RI LARA++ D+ LLD+P + +D+H
Sbjct: 344 TFSGGWRMRIALARALFIEPDLLLLDEPTNHLDLH 378
>gnl|CDD|213200 cd03233, ABCG_PDR_domain1, First domain of the pleiotropic drug
resistance-like subfamily G of ATP-binding cassette
transporters. The pleiotropic drug resistance (PDR) is
a well-described phenomenon occurring in fungi and
shares several similarities with processes in bacteria
and higher eukaryotes. This PDR subfamily represents
domain I of its (ABC-IM)2 organization. ABC transporters
are a large family of proteins involved in the transport
of a wide variety of different compounds including
sugars, ions, peptides, and more complex organic
molecules. The nucleotide-binding domain shows the
highest similarity between all members of the family.
ABC transporters are a subset of nucleotide hydrolases
that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing proteins.
Length = 202
Score = 41.5 bits (98), Expect = 2e-04
Identities = 34/151 (22%), Positives = 59/151 (39%), Gaps = 35/151 (23%)
Query: 107 LNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSLGGTVSYASQEPWIFAA 166
L S KP ++ ++G G+G ++LL + N G VS+ G + Y FA
Sbjct: 23 LKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRT---EGNVSVEGDIHYNGIPYKEFAE 79
Query: 167 TIRQNILFGLPYLRRRYADVIRVCALQD------------DFDSLPNGDFTVVGERGASL 214
I++ + +D DF G+ V RG +
Sbjct: 80 KYPGEIIY---------------VSEEDVHFPTLTVRETLDFALRCKGNEFV---RG--I 119
Query: 215 SGGQKARINLARAVYKNADIYLLDDPLSAVD 245
SGG++ R+++A A+ A + D+ +D
Sbjct: 120 SGGERKRVSIAEALVSRASVLCWDNSTRGLD 150
>gnl|CDD|236898 PRK11308, dppF, dipeptide transporter ATP-binding subunit;
Provisional.
Length = 327
Score = 41.9 bits (99), Expect = 2e-04
Identities = 16/34 (47%), Positives = 26/34 (76%)
Query: 215 SGGQKARINLARAVYKNADIYLLDDPLSAVDMHV 248
SGGQ+ RI +ARA+ + D+ + D+P+SA+D+ V
Sbjct: 156 SGGQRQRIAIARALMLDPDVVVADEPVSALDVSV 189
>gnl|CDD|226952 COG4586, COG4586, ABC-type uncharacterized transport system, ATPase
component [General function prediction only].
Length = 325
Score = 42.0 bits (99), Expect = 2e-04
Identities = 33/143 (23%), Positives = 60/143 (41%), Gaps = 14/143 (9%)
Query: 110 VSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSLGGTVSYASQEPWI----FA 165
+S ++ +GA GAGK++ L ++ L +SGKV + G + +E ++
Sbjct: 43 ISFEIPKGEIVGFLGANGAGKSTTLKMLTGLLLPTSGKVRVNGKDPFRRREEYLRSIGLV 102
Query: 166 ATIRQNILFGLPYLRRRYADVIRVCALQDDFDSLPNGDFTV--------VGERGASLSGG 217
+ + + LP L +V+++ D + DF + LS G
Sbjct: 103 MGQKLQLWWDLPALDS--LEVLKLIYEIPDDEFAERLDFLTEILDLEGFLKWPVRKLSLG 160
Query: 218 QKARINLARAVYKNADIYLLDDP 240
Q+ R LA A+ + LD+P
Sbjct: 161 QRMRAELAAALLHPPKVLFLDEP 183
>gnl|CDD|181906 PRK09493, glnQ, glutamine ABC transporter ATP-binding protein;
Reviewed.
Length = 240
Score = 41.6 bits (98), Expect = 2e-04
Identities = 44/165 (26%), Positives = 73/165 (44%), Gaps = 39/165 (23%)
Query: 107 LNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELR-ISSGKVSLGGTVSYASQEPWIFA 165
L+ + + ++ IIG G+GK++LL I N+L I+SG + + G +P +
Sbjct: 17 LHNIDLNIDQGEVVVIIGPSGSGKSTLLRCI-NKLEEITSGDLIVDG---LKVNDPKVDE 72
Query: 166 ATIRQ-------------------NILFGLPYLRRRYADVIRVCALQDDFDSLPNGDFTV 206
IRQ N++FG +R A +++ +
Sbjct: 73 RLIRQEAGMVFQQFYLFPHLTALENVMFGPLRVRG---------ASKEEAEKQARELLAK 123
Query: 207 VG--ERG----ASLSGGQKARINLARAVYKNADIYLLDDPLSAVD 245
VG ER + LSGGQ+ R+ +ARA+ + L D+P SA+D
Sbjct: 124 VGLAERAHHYPSELSGGQQQRVAIARALAVKPKLMLFDEPTSALD 168
>gnl|CDD|184196 PRK13636, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 283
Score = 41.4 bits (97), Expect = 2e-04
Identities = 40/166 (24%), Positives = 76/166 (45%), Gaps = 41/166 (24%)
Query: 107 LNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSLGGT-VSYAS------- 158
L ++I K ++ I+G GAGK++L + L+ SSG++ G + Y+
Sbjct: 22 LKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRILFDGKPIDYSRKGLMKLR 81
Query: 159 -------QEP--WIFAATIRQNILFG-----LPY--LRRRYADVIR---VCALQDDFDSL 199
Q+P +F+A++ Q++ FG LP +R+R + ++ + L+D
Sbjct: 82 ESVGMVFQDPDNQLFSASVYQDVSFGAVNLKLPEDEVRKRVDNALKRTGIEHLKD----- 136
Query: 200 PNGDFTVVGERGASLSGGQKARINLARAVYKNADIYLLDDPLSAVD 245
+ LS GQK R+ +A + + +LD+P + +D
Sbjct: 137 ---------KPTHCLSFGQKKRVAIAGVLVMEPKVLVLDEPTAGLD 173
>gnl|CDD|226647 COG4181, COG4181, Predicted ABC-type transport system involved in
lysophospholipase L1 biosynthesis, ATPase component
[Secondary metabolites biosynthesis, transport, and
catabolism].
Length = 228
Score = 40.8 bits (96), Expect = 3e-04
Identities = 41/188 (21%), Positives = 64/188 (34%), Gaps = 48/188 (25%)
Query: 99 SLQNADLT----------LNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKV 148
+ + T L V + K + I+G G+GK++LL ++ SSG+V
Sbjct: 8 EVHHLSKTVGQGEGELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPSSGEV 67
Query: 149 SLGGTVSYASQEPWIFAATIRQNILF-----------------GLPYL---------RRR 182
L G + E AA +++ F LP R
Sbjct: 68 RLLGQPLHKLDEDAR-AALRARHVGFVFQSFHLIPNLTALENVALPLELRGESSADSRAG 126
Query: 183 YADVIRVCALQDDFDSLPNGDFTVVGERGASLSGGQKARINLARAVYKNADIYLLDDPLS 242
++ L P A LSGG++ R+ LARA D+ D+P
Sbjct: 127 AKALLEAVGLGKRLTHYP-----------AQLSGGEQQRVALARAFAGRPDVLFADEPTG 175
Query: 243 AVDMHVGK 250
+D G
Sbjct: 176 NLDRATGD 183
>gnl|CDD|213182 cd03215, ABC_Carb_Monos_II, Second domain of the ATP-binding
cassette component of monosaccharide transport system.
This family represents domain II of the carbohydrate
uptake proteins that transport only monosaccharides
(Monos). The Carb_Monos family is involved in the uptake
of monosaccharides, such as pentoses (such as xylose,
arabinose, and ribose) and hexoses (such as xylose,
arabinose, and ribose), that cannot be broken down to
simple sugars by hydrolysis. In members of Carb_Monos
family the single hydrophobic gene product forms a
homodimer, while the ABC protein represents a fusion of
two nucleotide-binding domains. However, it is assumed
that two copies of the ABC domains are present in the
assembled transporter.
Length = 182
Score = 40.5 bits (96), Expect = 3e-04
Identities = 32/165 (19%), Positives = 64/165 (38%), Gaps = 41/165 (24%)
Query: 89 VSLDNVTAQWSLQNADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKV 148
+ + ++ + ++++ + A I I G +G G+T L + +SG++
Sbjct: 5 LEVRGLSVKGAVRDVSFEVRAGEIV-------GIAGLVGNGQTELAEALFGLRPPASGEI 57
Query: 149 SLGGTVSYASQEPWIFAATIRQNILFGLPYLRRRYADVIR--VCALQDD------FDSLP 200
+L G P RR D IR + + +D L
Sbjct: 58 TLDGK-----------------------PVTRRSPRDAIRAGIAYVPEDRKREGLVLDLS 94
Query: 201 NGDFTVVGERGASLSGGQKARINLARAVYKNADIYLLDDPLSAVD 245
+ + + LSGG + ++ LAR + ++ + +LD+P VD
Sbjct: 95 VAENIALS---SLLSGGNQQKVVLARWLARDPRVLILDEPTRGVD 136
>gnl|CDD|226637 COG4167, SapF, ABC-type antimicrobial peptide transport system,
ATPase component [Defense mechanisms].
Length = 267
Score = 41.0 bits (96), Expect = 3e-04
Identities = 40/164 (24%), Positives = 70/164 (42%), Gaps = 36/164 (21%)
Query: 110 VSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSLG------GTVSYAS----- 158
VS T + Q IIG G+GK++L ++ + +SG++ + G S+ S
Sbjct: 32 VSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGEILINDHPLHFGDYSFRSKRIRM 91
Query: 159 --QEP-----------WIFAATIRQNILFGLPYLRRRYADVIRVCALQDDFDSL-PNGDF 204
Q+P I +R N R++ + +R+ L D + P+
Sbjct: 92 IFQDPNTSLNPRLRIGQILDFPLRLNTDLEPEQRRKQIFETLRMVGLLPDHANYYPH--- 148
Query: 205 TVVGERGASLSGGQKARINLARAVYKNADIYLLDDPLSAVDMHV 248
L+ GQK R+ LARA+ I + D+ L+++DM +
Sbjct: 149 --------MLAPGQKQRVALARALILRPKIIIADEALASLDMSM 184
>gnl|CDD|226641 COG4172, COG4172, ABC-type uncharacterized transport system,
duplicated ATPase component [General function prediction
only].
Length = 534
Score = 41.5 bits (98), Expect = 3e-04
Identities = 42/172 (24%), Positives = 70/172 (40%), Gaps = 43/172 (25%)
Query: 107 LNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSLGGTVSYASQEPWIFAA 166
++ +S+T + Q ++G G+GK++L +L + S G++ G +
Sbjct: 303 VDGISLTLRRGQTLGLVGESGSGKSTLGLALLRLIP-SQGEIRFDGQDIDGLSRKEMRPL 361
Query: 167 TIRQNILFGLPY----LRRRYADVI------------------RVC-ALQDDFDSLPNGD 203
R ++F PY R +I RV AL++
Sbjct: 362 RRRMQVVFQDPYGSLSPRMTVGQIIEEGLRVHEPKLSAAERDQRVIEALEE--------- 412
Query: 204 FTVVGERGASL-------SGGQKARINLARAVYKNADIYLLDDPLSAVDMHV 248
VG A+ SGGQ+ RI +ARA+ ++ LLD+P SA+D V
Sbjct: 413 ---VGLDPATRNRYPHEFSGGQRQRIAIARALILKPELILLDEPTSALDRSV 461
Score = 29.9 bits (68), Expect = 1.3
Identities = 14/35 (40%), Positives = 24/35 (68%)
Query: 214 LSGGQKARINLARAVYKNADIYLLDDPLSAVDMHV 248
LSGGQ+ R+ +A A+ D+ + D+P +A+D+ V
Sbjct: 158 LSGGQRQRVMIAMALANEPDLLIADEPTTALDVTV 192
>gnl|CDD|213205 cd03238, ABC_UvrA, ATP-binding cassette domain of the excision
repair protein UvrA. Nucleotide excision repair in
eubacteria is a process that repairs DNA damage by the
removal of a 12-13-mer oligonucleotide containing the
lesion. Recognition and cleavage of the damaged DNA is a
multistep ATP-dependent reaction that requires the UvrA,
UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases,
with UvrA having two ATP binding sites, which have the
characteristic signature of the family of ABC proteins,
and UvrB having one ATP binding site that is
structurally related to that of helicases.
Length = 176
Score = 40.0 bits (94), Expect = 4e-04
Identities = 36/160 (22%), Positives = 65/160 (40%), Gaps = 33/160 (20%)
Query: 107 LNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSLGGTVSYASQEPWIFAA 166
L + ++ L + G G+GK++L++ L SGK L + S+ IF
Sbjct: 11 LQNLDVSIPLNVLVVVTGVSGSGKSTLVNEGLYA----SGKARLISFLPKFSRNKLIFID 66
Query: 167 TIRQNILFGLPYLRRRYADVIRVCALQDDFDSLPNGDFTVVGERGASLSGGQKARINLAR 226
++ I GL YL +G++ ++LSGG+ R+ LA
Sbjct: 67 QLQFLIDVGLGYLT--------------------------LGQKLSTLSGGELQRVKLAS 100
Query: 227 AVYKNAD--IYLLDDPLSAVDMHVGKHLFEDCISGCLTSG 264
++ +++LD+P + + L E I G + G
Sbjct: 101 ELFSEPPGTLFILDEPSTGLHQQDINQLLE-VIKGLIDLG 139
>gnl|CDD|213189 cd03222, ABC_RNaseL_inhibitor, ATP-binding cassette domain of RNase
L inhibitor. The ABC ATPase RNase L inhibitor (RLI) is
a key enzyme in ribosomal biogenesis, formation of
translation preinitiation complexes, and assembly of HIV
capsids. RLI's are not transport proteins, and thus
cluster with a group of soluble proteins that lack the
transmembrane components commonly found in other members
of the family. Structurally, RLI's have an N-terminal
Fe-S domain and two nucleotide-binding domains, which
are arranged to form two composite active sites in their
interface cleft. RLI is one of the most conserved
enzymes between archaea and eukaryotes with a sequence
identity more than 48%. The high degree of evolutionary
conservation suggests that RLI performs a central role
in archaeal and eukaryotic physiology.
Length = 177
Score = 39.9 bits (93), Expect = 4e-04
Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Query: 193 QDDFDSLPNGDFTVVGERGASLSGGQKARINLARAVYKNADIYLLDDPLSAVD 245
D D G V + LSGG+ R+ +A A+ +NA YL D+P + +D
Sbjct: 52 NGDNDEWD-GITPVYKPQYIDLSGGELQRVAIAAALLRNATFYLFDEPSAYLD 103
>gnl|CDD|213234 cd03267, ABC_NatA_like, ATP-binding cassette domain of an
uncharacterized transporter similar in sequence to NatA.
NatA is the ATPase component of a bacterial ABC-type
Na+ transport system called NatAB, which catalyzes
ATP-dependent electrogenic Na+ extrusion without
mechanically coupled to proton or K+ uptake. NatB
possess six putative membrane spanning regions at its
C-terminus. In B. subtilis, NatAB is inducible by agents
such as ethanol and protonophores, which lower the
proton-motive force across the membrane. The closest
sequence similarity to NatA is exhibited by DrrA of the
two-component daunorubicin- and doxorubicin-efflux
system. Hence, the functional NatAB is presumably
assembled with two copies of the single ATP-binding
protein and the single integral membrane protein.
Length = 236
Score = 40.4 bits (95), Expect = 4e-04
Identities = 39/160 (24%), Positives = 67/160 (41%), Gaps = 28/160 (17%)
Query: 107 LNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSLGGTVSYASQEPWIFAA 166
L +S T + ++ IG GAGKT+ L I+ L+ +SG+V + G V + ++ F
Sbjct: 37 LKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGEVRVAGLVPWKRRKK--FLR 94
Query: 167 TI------RQNILFGLP-----YLRR--------RYADVIRVCALQDDFDSLPNGDFTVV 207
I + + + LP YL R+ + + + L +
Sbjct: 95 RIGVVFGQKTQLWWDLPVIDSFYLLAAIYDLPPARFKKRLDELS-----ELLDLEELLDT 149
Query: 208 GERGASLSGGQKARINLARAVYKNADIYLLDDPLSAVDMH 247
R LS GQ+ R +A A+ +I LD+P +D+
Sbjct: 150 PVR--QLSLGQRMRAEIAAALLHEPEILFLDEPTIGLDVV 187
>gnl|CDD|182592 PRK10619, PRK10619, histidine/lysine/arginine/ornithine transporter
subunit; Provisional.
Length = 257
Score = 40.0 bits (93), Expect = 6e-04
Identities = 16/38 (42%), Positives = 26/38 (68%)
Query: 208 GERGASLSGGQKARINLARAVYKNADIYLLDDPLSAVD 245
G+ LSGGQ+ R+++ARA+ ++ L D+P SA+D
Sbjct: 147 GKYPVHLSGGQQQRVSIARALAMEPEVLLFDEPTSALD 184
>gnl|CDD|236997 PRK11831, PRK11831, putative ABC transporter ATP-binding protein
YrbF; Provisional.
Length = 269
Score = 39.7 bits (93), Expect = 7e-04
Identities = 41/163 (25%), Positives = 64/163 (39%), Gaps = 40/163 (24%)
Query: 110 VSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSLGGTVSYASQEPWIFAATIR 169
+S+T ++ I+G G GKT+LL +I ++ G++ G A ++ R
Sbjct: 26 ISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEILFDGENIPAMSRSRLYTVRKR 85
Query: 170 QNILFGLPYLRRRYADVIRVCALQDDFDSLPNGDF---------------TV------VG 208
++LF + AL D + N + TV VG
Sbjct: 86 MSMLF-------------QSGALFTDMNVFDNVAYPLREHTQLPAPLLHSTVMMKLEAVG 132
Query: 209 ERGAS------LSGGQKARINLARAVYKNADIYLLDDPLSAVD 245
RGA+ LSGG R LARA+ D+ + D+P D
Sbjct: 133 LRGAAKLMPSELSGGMARRAALARAIALEPDLIMFDEPFVGQD 175
>gnl|CDD|182893 PRK11000, PRK11000, maltose/maltodextrin transporter ATP-binding
protein; Provisional.
Length = 369
Score = 40.0 bits (94), Expect = 7e-04
Identities = 41/146 (28%), Positives = 64/146 (43%), Gaps = 38/146 (26%)
Query: 123 IGAIGAGKTSLLHIILNELRISSGKVSLG--------------GTV--SYASQEPWIFAA 166
+G G GK++LL +I I+SG + +G G V SYA P +
Sbjct: 35 VGPSGCGKSTLLRMIAGLEDITSGDLFIGEKRMNDVPPAERGVGMVFQSYALY-PHL--- 90
Query: 167 TIRQNILFGL-------PYLRRRYADVIRVCALQDDFDSLPNGDFTVVGERGASLSGGQK 219
++ +N+ FGL + +R V V L D P +LSGGQ+
Sbjct: 91 SVAENMSFGLKLAGAKKEEINQRVNQVAEVLQLAHLLDRKPK-----------ALSGGQR 139
Query: 220 ARINLARAVYKNADIYLLDDPLSAVD 245
R+ + R + ++LLD+PLS +D
Sbjct: 140 QRVAIGRTLVAEPSVFLLDEPLSNLD 165
>gnl|CDD|183244 PRK11629, lolD, lipoprotein transporter ATP-binding subunit;
Provisional.
Length = 233
Score = 39.4 bits (92), Expect = 7e-04
Identities = 45/178 (25%), Positives = 74/178 (41%), Gaps = 46/178 (25%)
Query: 107 LNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSLGG----TVSYASQEPW 162
L+ VS + ++ I+G+ G+GK++LLH++ +SG V G +S A++
Sbjct: 25 LHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMSKLSSAAK--- 81
Query: 163 IFAATIRQNILFGLPYLRRRYADVIRVCALQDDFDSLPN-------GD------------ 203
A +R L G Y + L DF +L N G
Sbjct: 82 ---AELRNQKL-GFIY---------QFHHLLPDFTALENVAMPLLIGKKKPAEINSRALE 128
Query: 204 -FTVVG------ERGASLSGGQKARINLARAVYKNADIYLLDDPLSAVDMHVGKHLFE 254
VG R + LSGG++ R+ +ARA+ N + L D+P +D +F+
Sbjct: 129 MLAAVGLEHRANHRPSELSGGERQRVAIARALVNNPRLVLADEPTGNLDARNADSIFQ 186
>gnl|CDD|236689 PRK10419, nikE, nickel transporter ATP-binding protein NikE;
Provisional.
Length = 268
Score = 39.7 bits (93), Expect = 8e-04
Identities = 41/171 (23%), Positives = 66/171 (38%), Gaps = 43/171 (25%)
Query: 107 LNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSLGG-------------- 152
LN VS++ K + ++G G GK++L +++ S G VS G
Sbjct: 28 LNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQGNVSWRGEPLAKLNRAQRKAF 87
Query: 153 --TVSYASQEP-----------WIFAATIRQNILFGLPYLRR--RYADVIRVCALQD-DF 196
+ Q+ I +R L L R R ++++R L D
Sbjct: 88 RRDIQMVFQDSISAVNPRKTVREIIREPLRH--LLSLDKAERLARASEMLRAVDLDDSVL 145
Query: 197 DSLPNGDFTVVGERGASLSGGQKARINLARAVYKNADIYLLDDPLSAVDMH 247
D P LSGGQ R+ LARA+ + +LD+ +S +D+
Sbjct: 146 DKRP-----------PQLSGGQLQRVCLARALAVEPKLLILDEAVSNLDLV 185
>gnl|CDD|184210 PRK13651, PRK13651, cobalt transporter ATP-binding subunit;
Provisional.
Length = 305
Score = 39.7 bits (93), Expect = 9e-04
Identities = 43/187 (22%), Positives = 70/187 (37%), Gaps = 60/187 (32%)
Query: 107 LNAVSITFKPKQLACIIGAIGAGKTSLL-HIILNELRI-SSGKVS--------------- 149
L+ VS+ + IIG G+GKT+ + H LN L + +G +
Sbjct: 23 LDNVSVEINQGEFIAIIGQTGSGKTTFIEH--LNALLLPDTGTIEWIFKDEKNKKKTKEK 80
Query: 150 --------LGGT----------------VSYASQEPWIFAATIRQNILFGLPYL------ 179
+ T V + E +F TI ++I+FG +
Sbjct: 81 EKVLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLFEQTIEKDIIFGPVSMGVSKEE 140
Query: 180 -RRRYADVIRVCALQDDFDSLPNGDFTVVGERGASLSGGQKARINLARAVYKNADIYLLD 238
++R A I + L + + L F LSGGQK R+ LA + D + D
Sbjct: 141 AKKRAAKYIELVGLDESY--LQRSPF--------ELSGGQKRRVALAGILAMEPDFLVFD 190
Query: 239 DPLSAVD 245
+P + +D
Sbjct: 191 EPTAGLD 197
>gnl|CDD|226961 COG4598, HisP, ABC-type histidine transport system, ATPase
component [Amino acid transport and metabolism].
Length = 256
Score = 39.3 bits (92), Expect = 9e-04
Identities = 16/34 (47%), Positives = 24/34 (70%)
Query: 212 ASLSGGQKARINLARAVYKNADIYLLDDPLSAVD 245
A LSGGQ+ R+ +ARA+ ++ L D+P SA+D
Sbjct: 151 AHLSGGQQQRVAIARALAMEPEVMLFDEPTSALD 184
>gnl|CDD|236861 PRK11147, PRK11147, ABC transporter ATPase component; Reviewed.
Length = 635
Score = 39.9 bits (94), Expect = 0.001
Identities = 46/178 (25%), Positives = 78/178 (43%), Gaps = 40/178 (22%)
Query: 100 LQNADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSLGG--TVSYA 157
L NA+L + + + C++G GAGK++L+ I+ E+ + G++ V+
Sbjct: 19 LDNAELHI-------EDNERVCLVGRNGAGKSTLMKILNGEVLLDDGRIIYEQDLIVARL 71
Query: 158 SQEPWIFAA-TIRQNILFGLP----YLRRRYADVIRVCA-------------LQDDFD-- 197
Q+P T+ + G+ YL +RY D+ + LQ+ D
Sbjct: 72 QQDPPRNVEGTVYDFVAEGIEEQAEYL-KRYHDISHLVETDPSEKNLNELAKLQEQLDHH 130
Query: 198 ---SLPNGDFTVVGERG-------ASLSGGQKARINLARAVYKNADIYLLDDPLSAVD 245
L N V+ + G +SLSGG + L RA+ N D+ LLD+P + +D
Sbjct: 131 NLWQLENRINEVLAQLGLDPDAALSSLSGGWLRKAALGRALVSNPDVLLLDEPTNHLD 188
Score = 35.7 bits (83), Expect = 0.024
Identities = 40/139 (28%), Positives = 62/139 (44%), Gaps = 41/139 (29%)
Query: 122 IIGAIGAGKTSLLHIILNELRISSGKVSLGGT--VSYASQ-----EPWIFAATIRQNILF 174
+IG G GKT+LL ++L +L+ SG++ G V+Y Q +P T+ N+
Sbjct: 350 LIGPNGCGKTTLLKLMLGQLQADSGRIHCGTKLEVAYFDQHRAELDP---EKTVMDNLAE 406
Query: 175 G-------------LPYLRRRYADVIRVCALQDDFDSLPNGDFTVVGERGASLSGGQKAR 221
G L YL+ DF P T V +LSGG++ R
Sbjct: 407 GKQEVMVNGRPRHVLGYLQ--------------DFLFHPKRAMTPV----KALSGGERNR 448
Query: 222 INLARAVYKNADIYLLDDP 240
+ LAR K +++ +LD+P
Sbjct: 449 LLLARLFLKPSNLLILDEP 467
>gnl|CDD|223521 COG0444, DppD, ABC-type dipeptide/oligopeptide/nickel transport
system, ATPase component [Amino acid transport and
metabolism / Inorganic ion transport and metabolism].
Length = 316
Score = 39.5 bits (93), Expect = 0.001
Identities = 38/176 (21%), Positives = 68/176 (38%), Gaps = 48/176 (27%)
Query: 107 LNAVSITFKPKQLACIIGAIGAGKTSLLHIILNEL-----RISSGKVSLGGT-------- 153
++ VS K ++ I+G G+GK+ L I+ L RI G++ G
Sbjct: 21 VDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSLSEK 80
Query: 154 ---------VSYASQEP-----------WIFAATIRQNILFGLPYLRRRYADVIRVCALQ 193
++ Q+P A +R + L ++ A R L
Sbjct: 81 ELRKIRGKEIAMIFQDPMTSLNPVMTIGDQIAEVLRLH----GKGLSKKEAKE-RAIELL 135
Query: 194 DDFDSLPNGDFTVVGERGAS----LSGGQKARINLARAVYKNADIYLLDDPLSAVD 245
+ +P+ + R S LSGG + R+ +A A+ N + + D+P +A+D
Sbjct: 136 ELVG-IPDPE-----RRLKSYPHELSGGMRQRVMIAMALALNPKLLIADEPTTALD 185
>gnl|CDD|213207 cd03240, ABC_Rad50, ATP-binding cassette domain of Rad50. The
catalytic domains of Rad50 are similar to the
ATP-binding cassette of ABC transporters, but are not
associated with membrane-spanning domains. The conserved
ATP-binding motifs common to Rad50 and the ABC
transporter family include the Walker A and Walker B
motifs, the Q loop, a histidine residue in the switch
region, a D-loop, and a conserved LSGG sequence. This
conserved sequence, LSGG, is the most specific and
characteristic motif of this family and is thus known as
the ABC signature sequence.
Length = 204
Score = 38.7 bits (91), Expect = 0.001
Identities = 35/149 (23%), Positives = 54/149 (36%), Gaps = 36/149 (24%)
Query: 111 SITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSLGGTVSYASQEPWIFAATIRQ 170
I F L I+G GAGKT+++ + K +L G + S+ IR+
Sbjct: 17 EIEFF-SPLTLIVGQNGAGKTTIIEAL---------KYALTGELPPNSKGGAHDPKLIRE 66
Query: 171 N-------ILF----GLPYLRRRYADVIRVCAL--QDDFDSLPNGDFTVVGERGASLSGG 217
+ F G Y R ++ Q + + ++ RG SGG
Sbjct: 67 GEVRAQVKLAFENANGKKYTITRSLAILENVIFCHQGESNWP------LLDMRG-RCSGG 119
Query: 218 QKA------RINLARAVYKNADIYLLDDP 240
+K R+ LA N I LD+P
Sbjct: 120 EKVLASLIIRLALAETFGSNCGILALDEP 148
>gnl|CDD|183077 PRK11288, araG, L-arabinose transporter ATP-binding protein;
Provisional.
Length = 501
Score = 39.5 bits (93), Expect = 0.001
Identities = 39/161 (24%), Positives = 69/161 (42%), Gaps = 36/161 (22%)
Query: 107 LNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSLGG-TVSYASQEPWIFA 165
L+ +S + Q+ ++G GAGK++LL I+ + +G + + G + +AS + A
Sbjct: 20 LDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPDAGSILIDGQEMRFASTTAALAA 79
Query: 166 --ATIRQ------------NILFG-LPY---------LRRRYADVIRVCALQDDFDSLPN 201
A I Q N+ G LP+ L + ++ L D D P+
Sbjct: 80 GVAIIYQELHLVPEMTVAENLYLGQLPHKGGIVNRRLLNYEARE--QLEHLGVDID--PD 135
Query: 202 GDFTVVGERGASLSGGQKARINLARAVYKNADIYLLDDPLS 242
LS GQ+ + +A+A+ +NA + D+P S
Sbjct: 136 -------TPLKYLSIGQRQMVEIAKALARNARVIAFDEPTS 169
Score = 28.7 bits (65), Expect = 3.7
Identities = 10/29 (34%), Positives = 19/29 (65%)
Query: 124 GAIGAGKTSLLHIILNELRISSGKVSLGG 152
G +GAG++ L+ ++ R ++G+V L G
Sbjct: 286 GLVGAGRSELMKLLYGATRRTAGQVYLDG 314
>gnl|CDD|182036 PRK09700, PRK09700, D-allose transporter ATP-binding protein;
Provisional.
Length = 510
Score = 39.4 bits (92), Expect = 0.001
Identities = 34/186 (18%), Positives = 78/186 (41%), Gaps = 45/186 (24%)
Query: 89 VSLDNVTAQWSLQNADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKV 148
+S+ + + +A L +V++T P ++ ++G GAGK++L+ ++ + G +
Sbjct: 6 ISMAGIGKSFGPVHA---LKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTI 62
Query: 149 SLGGTVSYASQEPWIFAA----------------TIRQNILFG-LP-------------Y 178
++ +Y + + A T+ +N+ G
Sbjct: 63 TINNI-NYNKLDHKLAAQLGIGIIYQELSVIDELTVLENLYIGRHLTKKVCGVNIIDWRE 121
Query: 179 LRRRYADVIRVCALQDDFDSLPNGDFTVVGERGASLSGGQKARINLARAVYKNADIYLLD 238
+R R A ++ L+ D D E+ A+LS K + +A+ + +A + ++D
Sbjct: 122 MRVRAAMMLLRVGLKVDLD-----------EKVANLSISHKQMLEIAKTLMLDAKVIIMD 170
Query: 239 DPLSAV 244
+P S++
Sbjct: 171 EPTSSL 176
>gnl|CDD|172732 PRK14244, PRK14244, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 251
Score = 38.7 bits (90), Expect = 0.001
Identities = 37/159 (23%), Positives = 63/159 (39%), Gaps = 38/159 (23%)
Query: 117 KQLACIIGAIGAGKTSLLH-----------------IILNELRISSGK---VSLGGTVSY 156
+++ IG G GK++ L + ++ + + S V L V
Sbjct: 31 REVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSVDTNVVLLRAKVGM 90
Query: 157 ASQEPWIFAATIRQNILFGLPYLRRRYADVIRVCALQDDFDSLPNGDFTVVG-------- 208
Q+P F +I N+ +G P L + + D + T VG
Sbjct: 91 VFQKPNPFPKSIYDNVAYG-PKLHGLAKN-------KKKLDEIVEKSLTSVGLWEELGDR 142
Query: 209 --ERGASLSGGQKARINLARAVYKNADIYLLDDPLSAVD 245
+ LSGGQ+ R+ +ARA+ + L+D+P SA+D
Sbjct: 143 LKDSAFELSGGQQQRLCIARAIAVKPTMLLMDEPCSALD 181
>gnl|CDD|226968 COG4615, PvdE, ABC-type siderophore export system, fused ATPase and
permease components [Secondary metabolites biosynthesis,
transport, and catabolism / Inorganic ion transport and
metabolism].
Length = 546
Score = 39.4 bits (92), Expect = 0.001
Identities = 42/163 (25%), Positives = 76/163 (46%), Gaps = 23/163 (14%)
Query: 89 VSLDNVTAQWSLQNADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKV 148
+ L NV +++ Q+ + +++T K +L +IG G+GK++L ++ + SG++
Sbjct: 323 LELRNV--RFAYQDNAFHVGPINLTIKRGELVFLIGGNGSGKSTLAMLLTGLYQPQSGEI 380
Query: 149 SLGGT-VSYASQEPW--IFAATIRQNILF---------GLPYLRRRYADVIRVCALQDDF 196
L G VS E + +F+A LF P L ++ + +
Sbjct: 381 LLDGKPVSAEQLEDYRKLFSAVFSDYHLFDQLLGPEGKASPQLIEKWLQRLELAHKT--- 437
Query: 197 DSLPNGDFTVVGERGASLSGGQKARINLARAVYKNADIYLLDD 239
SL +G F+ + LS GQK R+ L A+ + DI +LD+
Sbjct: 438 -SLNDGRFSNL-----KLSTGQKKRLALLLALLEERDILVLDE 474
>gnl|CDD|185037 PRK15079, PRK15079, oligopeptide ABC transporter ATP-binding
protein OppF; Provisional.
Length = 331
Score = 38.9 bits (91), Expect = 0.002
Identities = 36/149 (24%), Positives = 63/149 (42%), Gaps = 32/149 (21%)
Query: 122 IIGAIGAGKTSLLHIILNELRISSGKVS-LGGTVSYASQEPWIFAATIRQNI--LFGLPY 178
++G G GK++ I+ ++ + G+V+ LG + + W +R +I +F P
Sbjct: 52 VVGESGCGKSTFARAIIGLVKATDGEVAWLGKDLLGMKDDEW---RAVRSDIQMIFQDPL 108
Query: 179 L----RRRYADVI------------------RVCALQDDFDSLPNGDFTVVGERGASLSG 216
R ++I RV A+ LPN ++ SG
Sbjct: 109 ASLNPRMTIGEIIAEPLRTYHPKLSRQEVKDRVKAMMLKVGLLPN----LINRYPHEFSG 164
Query: 217 GQKARINLARAVYKNADIYLLDDPLSAVD 245
GQ RI +ARA+ + + D+P+SA+D
Sbjct: 165 GQCQRIGIARALILEPKLIICDEPVSALD 193
>gnl|CDD|131681 TIGR02633, xylG, D-xylose ABC transporter, ATP-binding protein.
Several bacterial species have enzymes xylose isomerase
and xylulokinase enzymes for xylose utilization. Members
of this protein family are the ATP-binding cassette
(ABC) subunit of the known or predicted high-affinity
xylose ABC transporter for xylose import. These genes,
which closely resemble other sugar transport ABC
transporter genes, typically are encoded near xylose
utilization enzymes and regulatory proteins. Note that
this form of the transporter contains two copies of the
ABC transporter domain (pfam00005) [Transport and
binding proteins, Carbohydrates, organic alcohols, and
acids].
Length = 500
Score = 39.0 bits (91), Expect = 0.002
Identities = 36/166 (21%), Positives = 68/166 (40%), Gaps = 38/166 (22%)
Query: 107 LNAVSITFKPKQLACIIGAIGAGKTSLLHIIL----------------NELRISSGKVSL 150
L+ + + +P + + G GAGK++L+ I+ + L+ S+ + +
Sbjct: 17 LDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSPLKASNIRDTE 76
Query: 151 GGTVSYASQE-PWIFAATIRQNILFG----LPYLRRRYADVIRVC-------ALQDDFDS 198
+ QE + ++ +NI G LP R Y + L D +
Sbjct: 77 RAGIVIIHQELTLVPELSVAENIFLGNEITLPGGRMAYNAMYLRAKNLLRELQLDADNVT 136
Query: 199 LPNGDFTVVGERGASLSGGQKARINLARAVYKNADIYLLDDPLSAV 244
P GD GGQ+ + +A+A+ K A + +LD+P S++
Sbjct: 137 RPVGD----------YGGGQQQLVEIAKALNKQARLLILDEPSSSL 172
Score = 29.4 bits (66), Expect = 2.1
Identities = 12/35 (34%), Positives = 20/35 (57%)
Query: 212 ASLSGGQKARINLARAVYKNADIYLLDDPLSAVDM 246
LSGG + + LA+ + N + +LD+P VD+
Sbjct: 402 GRLSGGNQQKAVLAKMLLTNPRVLILDEPTRGVDV 436
>gnl|CDD|184198 PRK13638, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 271
Score = 38.1 bits (88), Expect = 0.003
Identities = 42/162 (25%), Positives = 66/162 (40%), Gaps = 33/162 (20%)
Query: 107 LNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKV---------------SLG 151
L +++ F + ++GA G GK++L + LR G V +L
Sbjct: 17 LKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKPLDYSKRGLLALR 76
Query: 152 GTVSYASQEP--WIFAATIRQNILFGLPYLRRRYADVIRVCALQDDFDSLPNGDFTVVGE 209
V+ Q+P IF I +I F L L A++ R D+ T+V
Sbjct: 77 QQVATVFQDPEQQIFYTDIDSDIAFSLRNLGVPEAEITRRV---DE-------ALTLVDA 126
Query: 210 RG------ASLSGGQKARINLARAVYKNADIYLLDDPLSAVD 245
+ LS GQK R+ +A A+ A LLD+P + +D
Sbjct: 127 QHFRHQPIQCLSHGQKKRVAIAGALVLQARYLLLDEPTAGLD 168
>gnl|CDD|213236 cd03269, ABC_putative_ATPase, ATP-binding cassette domain of an
uncharacterized transporter. This subgroup is related
to the subfamily A transporters involved in drug
resistance, nodulation, lipid transport, and bacteriocin
and lantibiotic immunity. In eubacteria and archaea, the
typical organization consists of one ABC and one or two
integral membranes. ABC transporters are a large family
of proteins involved in the transport of a wide variety
of different compounds, like sugars, ions, peptides and
more complex organic molecules. The nucleotide binding
domain shows the highest similarity between all members
of the family. ABC transporters are a subset of
nucleotide hydrolases that contain a signature motif,
Q-loop, and H-loop/switch region in addition to the
Walker A motif/P-loop and Walker B motif commonly found
in a number of ATP- and GTP-binding and hydrolyzing
proteins.
Length = 210
Score = 37.3 bits (87), Expect = 0.004
Identities = 40/171 (23%), Positives = 73/171 (42%), Gaps = 33/171 (19%)
Query: 107 LNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSLGGTVSYASQEPWIFAA 166
L+ +S + + ++ ++G GAGKT+ + +IL + SG+V G +P AA
Sbjct: 16 LDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDG-------KPLDIAA 68
Query: 167 TIRQNILFG-LP-----YLRRRYADVIRVCA-------------LQDDFDSLPNGDFTVV 207
R G LP Y + + D + A + + + L ++
Sbjct: 69 RNR----IGYLPEERGLYPKMKVIDQLVYLAQLKGLKKEEARRRIDEWLERLELSEYA-- 122
Query: 208 GERGASLSGGQKARINLARAVYKNADIYLLDDPLSAVDMHVGKHLFEDCIS 258
+R LS G + ++ AV + ++ +LD+P S +D V L +D I
Sbjct: 123 NKRVEELSKGNQQKVQFIAAVIHDPELLILDEPFSGLDP-VNVELLKDVIR 172
>gnl|CDD|132313 TIGR03269, met_CoM_red_A2, methyl coenzyme M reductase system,
component A2. The enzyme that catalyzes the final step
in methanogenesis, methyl coenzyme M reductase, contains
alpha, beta, and gamma chains. In older literature, the
complex of alpha, beta, and gamma chains was termed
component C, while this single chain protein was termed
methyl coenzyme M reductase system component A2 [Energy
metabolism, Methanogenesis].
Length = 520
Score = 38.2 bits (89), Expect = 0.004
Identities = 44/210 (20%), Positives = 84/210 (40%), Gaps = 63/210 (30%)
Query: 89 VSLDNVTAQWSLQNADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHII--LNELRISSG 146
+ + N+T ++ + L +S T + ++ I+G GAGK+ L+H++ +++ +SG
Sbjct: 1 IEVKNLTKKFDGKEV---LKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSG 57
Query: 147 KV------------------------SLGGTVSYASQEPWIFAATIRQNILFGLPYLRRR 182
++ GGT+ + W + +R+ I R+R
Sbjct: 58 RIIYHVALCEKCGYVERPSKVGEPCPVCGGTLEPEEVDFWNLSDKLRRRI-------RKR 110
Query: 183 YADVI-RVCALQDD-------FDSLPNG---------------DFTVVGER----GASLS 215
A ++ R AL D ++L + + R LS
Sbjct: 111 IAIMLQRTFALYGDDTVLDNVLEALEEIGYEGKEAVGRAVDLIEMVQLSHRITHIARDLS 170
Query: 216 GGQKARINLARAVYKNADIYLLDDPLSAVD 245
GG+K R+ LAR + K ++L D+P +D
Sbjct: 171 GGEKQRVVLARQLAKEPFLFLADEPTGTLD 200
Score = 37.9 bits (88), Expect = 0.004
Identities = 41/171 (23%), Positives = 70/171 (40%), Gaps = 43/171 (25%)
Query: 107 LNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSL---------------- 150
++ VS+ K ++ I+G GAGKT+L II L +SG+V++
Sbjct: 300 VDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPTSGEVNVRVGDEWVDMTKPGPDG 359
Query: 151 -GGTVSYAS---QEPWIFA-ATIRQN----ILFGLP--YLRRRYADVIRVCALQDD---- 195
G Y QE ++ T+ N I LP R + +++ ++
Sbjct: 360 RGRAKRYIGILHQEYDLYPHRTVLDNLTEAIGLELPDELARMKAVITLKMVGFDEEKAEE 419
Query: 196 -FDSLPNGDFTVVGERGASLSGGQKARINLARAVYKNADIYLLDDPLSAVD 245
D P+ LS G++ R+ LA+ + K I +LD+P +D
Sbjct: 420 ILDKYPD-----------ELSEGERHRVALAQVLIKEPRIVILDEPTGTMD 459
>gnl|CDD|188208 TIGR02323, CP_lyasePhnK, phosphonate C-P lyase system protein PhnK.
Members of this family are the PhnK protein of C-P
lyase systems for utilization of phosphonates. These
systems resemble phosphonatase-based systems in having a
three component ABC transporter, where TIGR01097 is the
permease, TIGR01098 is the phosphonates binding protein,
and TIGR02315 is the ATP-binding cassette (ABC) protein.
They differ, however, in having, typically, ten or more
additional genes, many of which are believed to form a
membrane-associated complex. This protein (PhnK) and the
adjacent-encoded PhnL resemble transporter ATP-binding
proteins but are suggested, based on mutatgenesis
studies, to be part of this complex rather than part of
a transporter per se [Central intermediary metabolism,
Phosphorus compounds].
Length = 253
Score = 37.5 bits (87), Expect = 0.004
Identities = 40/176 (22%), Positives = 65/176 (36%), Gaps = 35/176 (19%)
Query: 108 NAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSL----GGTVS-YASQEP- 161
VS P ++ I+G G+GK++LL + L G + G + Y E
Sbjct: 20 RDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPDHGTATYIMRSGAELELYQLSEAE 79
Query: 162 --------WIFAATIRQNILFGLPYL---------------RRRYADVIRVCALQDDFDS 198
W F + QN GL R Y + IR A D+
Sbjct: 80 RRRLMRTEWGF---VHQNPRDGLRMRVSAGANIGERLMAIGARHYGN-IRATA--QDWLE 133
Query: 199 LPNGDFTVVGERGASLSGGQKARINLARAVYKNADIYLLDDPLSAVDMHVGKHLFE 254
D T + + + SGG + R+ +AR + + +D+P +D+ V L +
Sbjct: 134 EVEIDPTRIDDLPRAFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLD 189
>gnl|CDD|184203 PRK13643, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 288
Score = 37.8 bits (87), Expect = 0.004
Identities = 40/169 (23%), Positives = 75/169 (44%), Gaps = 16/169 (9%)
Query: 93 NVTAQWSLQNADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSLGG 152
N T Q + A L + + K +IG G+GK++LL + L+ + GKV++G
Sbjct: 8 NYTYQPNSPFASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGD 67
Query: 153 -TVSYASQEPWIFAATIRQNILFGLPYLRRRYADVIRVCAL--------QDDFDSLPNGD 203
VS S++ I + ++F P + V++ A ++ + +
Sbjct: 68 IVVSSTSKQKEIKPVRKKVGVVFQFPESQLFEETVLKDVAFGPQNFGIPKEKAEKIAAEK 127
Query: 204 FTVVG------ERGA-SLSGGQKARINLARAVYKNADIYLLDDPLSAVD 245
+VG E+ LSGGQ R+ +A + ++ +LD+P + +D
Sbjct: 128 LEMVGLADEFWEKSPFELSGGQMRRVAIAGILAMEPEVLVLDEPTAGLD 176
>gnl|CDD|172735 PRK14247, PRK14247, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 250
Score = 37.6 bits (87), Expect = 0.004
Identities = 41/169 (24%), Positives = 69/169 (40%), Gaps = 39/169 (23%)
Query: 107 LNAVSITFKPKQLACIIGAIGAGKTSLLHIILNEL-------RISSGKVSLGGT------ 153
L+ V++ + ++G G+GK++LL + N L R+S G+V L G
Sbjct: 19 LDGVNLEIPDNTITALMGPSGSGKSTLLRV-FNRLIELYPEARVS-GEVYLDGQDIFKMD 76
Query: 154 -------VSYASQEP-WIFAATIRQNILFGLPY---------LRRRYADVIRVCALQDDF 196
V Q P I +I +N+ GL L+ R + L D+
Sbjct: 77 VIELRRRVQMVFQIPNPIPNLSIFENVALGLKLNRLVKSKKELQERVRWALEKAQLWDEV 136
Query: 197 DSLPNGDFTVVGERGASLSGGQKARINLARAVYKNADIYLLDDPLSAVD 245
+ LSGGQ+ R+ +ARA+ ++ L D+P + +D
Sbjct: 137 KDR-------LDAPAGKLSGGQQQRLCIARALAFQPEVLLADEPTANLD 178
>gnl|CDD|236755 PRK10762, PRK10762, D-ribose transporter ATP binding protein;
Provisional.
Length = 501
Score = 37.7 bits (88), Expect = 0.004
Identities = 44/197 (22%), Positives = 86/197 (43%), Gaps = 42/197 (21%)
Query: 91 LDNVTAQWSLQNADLT---LNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGK 147
LD + L+ +L+ +N VS T + ++ + G +GAG+T L+ ++ L +SG
Sbjct: 249 LDKAPGEVRLKVDNLSGPGVNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGALPRTSGY 308
Query: 148 VSLGGT--------------VSYASQEP----WIFAATIRQNI-LFGLPYLR------RR 182
V+L G + Y S++ + ++++N+ L L Y +
Sbjct: 309 VTLDGHEVVTRSPQDGLANGIVYISEDRKRDGLVLGMSVKENMSLTALRYFSRAGGSLKH 368
Query: 183 YADVIRVCALQDDFDSL-----PNGDFTVVGERGASLSGGQKARINLARAVYKNADIYLL 237
+ V DF L P+ + +G LSGG + ++ +AR + + +L
Sbjct: 369 ADEQQAV----SDFIRLFNIKTPSME-QAIGL----LSGGNQQKVAIARGLMTRPKVLIL 419
Query: 238 DDPLSAVDMHVGKHLFE 254
D+P VD+ K +++
Sbjct: 420 DEPTRGVDVGAKKEIYQ 436
>gnl|CDD|226635 COG4161, ArtP, ABC-type arginine transport system, ATPase component
[Amino acid transport and metabolism].
Length = 242
Score = 37.1 bits (86), Expect = 0.005
Identities = 14/32 (43%), Positives = 22/32 (68%)
Query: 214 LSGGQKARINLARAVYKNADIYLLDDPLSAVD 245
LSGGQ+ R+ +ARA+ + L D+P +A+D
Sbjct: 142 LSGGQQQRVAIARALMMEPQVLLFDEPTAALD 173
>gnl|CDD|213199 cd03232, ABCG_PDR_domain2, Second domain of the pleiotropic drug
resistance-like (PDR) subfamily G of ATP-binding
cassette transporters. The pleiotropic drug resistance
(PDR) is a well-described phenomenon occurring in fungi
and shares several similarities with processes in
bacteria and higher eukaryotes. This PDR subfamily
represents domain I of its (ABC-IM)2 organization. ABC
transporters are a large family of proteins involved in
the transport of a wide variety of different compounds
including sugars, ions, peptides, and more complex
organic molecules. The nucleotide binding domain shows
the highest similarity between all members of the
family. ABC transporters are a subset of nucleotide
hydrolases that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing proteins.
Length = 192
Score = 36.5 bits (85), Expect = 0.006
Identities = 21/80 (26%), Positives = 37/80 (46%), Gaps = 12/80 (15%)
Query: 107 LNAVSITFKPKQLACIIGAIGAGKTSLLHIILN--ELRISSGKVSLGG---------TVS 155
LN +S KP L ++G GAGKT+LL ++ + +G++ + G +
Sbjct: 23 LNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKTAGVITGEILINGRPLDKNFQRSTG 82
Query: 156 YASQEPWIFA-ATIRQNILF 174
Y Q+ T+R+ + F
Sbjct: 83 YVEQQDVHSPNLTVREALRF 102
>gnl|CDD|182880 PRK10982, PRK10982, galactose/methyl galaxtoside transporter
ATP-binding protein; Provisional.
Length = 491
Score = 37.4 bits (87), Expect = 0.006
Identities = 41/169 (24%), Positives = 71/169 (42%), Gaps = 30/169 (17%)
Query: 107 LNAVSITFKPKQLACIIGAIGAGKTSLL------------HIIL--NELRISSGKVSLGG 152
L+ V++ +P + ++G GAGK++LL I+ E+ S K +L
Sbjct: 14 LDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKDSGSILFQGKEIDFKSSKEALEN 73
Query: 153 TVSYASQE-PWIFAATIRQNILFGLPYLR-------RRYADVIRVCALQDDFDSLPNGDF 204
+S QE + ++ N+ G + + Y D + + D D P
Sbjct: 74 GISMVHQELNLVLQRSVMDNMWLGRYPTKGMFVDQDKMYRDTKAIFD-ELDIDIDPR--- 129
Query: 205 TVVGERGASLSGGQKARINLARAVYKNADIYLLDDPLSAVDMHVGKHLF 253
+ A+LS Q I +A+A NA I ++D+P S++ HLF
Sbjct: 130 ----AKVATLSVSQMQMIEIAKAFSYNAKIVIMDEPTSSLTEKEVNHLF 174
>gnl|CDD|184205 PRK13646, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 286
Score = 36.7 bits (85), Expect = 0.007
Identities = 35/160 (21%), Positives = 74/160 (46%), Gaps = 26/160 (16%)
Query: 107 LNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSLGG-TVSYASQEPWI-- 163
++ V+ F+ + I+G G+GK++L+ I L+ ++G V++ T+++ +++ +I
Sbjct: 23 IHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITITHKTKDKYIRP 82
Query: 164 ----------------FAATIRQNILFGLPYLRRRYADVIRVCALQDDFDSLPNGDFT-- 205
F T+ + I+FG + +V L + F+
Sbjct: 83 VRKRIGMVFQFPESQLFEDTVEREIIFGPKNFKMNLDEV-----KNYAHRLLMDLGFSRD 137
Query: 206 VVGERGASLSGGQKARINLARAVYKNADIYLLDDPLSAVD 245
V+ + +SGGQ +I + + N DI +LD+P + +D
Sbjct: 138 VMSQSPFQMSGGQMRKIAIVSILAMNPDIIVLDEPTAGLD 177
>gnl|CDD|223473 COG0396, sufC, Cysteine desulfurase activator ATPase
[Posttranslational modification, protein turnover,
chaperones].
Length = 251
Score = 36.0 bits (84), Expect = 0.010
Identities = 34/175 (19%), Positives = 66/175 (37%), Gaps = 52/175 (29%)
Query: 107 LNAVSITFKPKQLACIIGAIGAGKTSLLHIILN--ELRISSGKVSLGGTVSYASQEPWIF 164
L V++T K ++ I+G G+GK++L + I+ + ++ G++ G
Sbjct: 20 LKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPKYEVTEGEILFDG------------ 67
Query: 165 AATIRQNILFGLPYLRRR-----------------YADVIRVCA--------LQDDFDSL 199
++IL P R R +D +R + +F
Sbjct: 68 -----EDILELSPDERARAGIFLAFQYPVEIPGVTNSDFLRAAMNARRGARGILPEFIKE 122
Query: 200 PNGDFTVVG------ERG--ASLSGGQKARINLARAVYKNADIYLLDDPLSAVDM 246
++G ER SGG+K R + + + + +LD+P S +D+
Sbjct: 123 LKEKAELLGLDEEFLERYVNEGFSGGEKKRNEILQLLLLEPKLAILDEPDSGLDI 177
>gnl|CDD|184202 PRK13642, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 277
Score = 36.2 bits (83), Expect = 0.012
Identities = 39/172 (22%), Positives = 73/172 (42%), Gaps = 19/172 (11%)
Query: 89 VSLDNVTAQWSLQNADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKV 148
+ ++N+ ++ ++ LN VS + + IIG G+GK++ +I GKV
Sbjct: 5 LEVENLVFKYEKESDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKV 64
Query: 149 SLGG-------------TVSYASQEP--WIFAATIRQNILFGLPYLRRRYADVIRVCALQ 193
+ G + Q P AT+ ++ FG+ ++I+ +
Sbjct: 65 KIDGELLTAENVWNLRRKIGMVFQNPDNQFVGATVEDDVAFGMENQGIPREEMIK--RVD 122
Query: 194 DDFDSLPNGDFTVVGERGASLSGGQKARINLARAVYKNADIYLLDDPLSAVD 245
+ ++ DF A LSGGQK R+ +A + +I +LD+ S +D
Sbjct: 123 EALLAVNMLDFKT--REPARLSGGQKQRVAVAGIIALRPEIIILDESTSMLD 172
>gnl|CDD|183133 PRK11432, fbpC, ferric transporter ATP-binding subunit;
Provisional.
Length = 351
Score = 36.2 bits (84), Expect = 0.013
Identities = 15/32 (46%), Positives = 22/32 (68%)
Query: 214 LSGGQKARINLARAVYKNADIYLLDDPLSAVD 245
+SGGQ+ R+ LARA+ + L D+PLS +D
Sbjct: 137 ISGGQQQRVALARALILKPKVLLFDEPLSNLD 168
>gnl|CDD|213203 cd03236, ABC_RNaseL_inhibitor_domain1, The ATP-binding cassette
domain 1 of RNase L inhibitor. The ABC ATPase, RNase L
inhibitor (RLI), is a key enzyme in ribosomal
biogenesis, formation of translation preinitiation
complexes, and assembly of HIV capsids. RLI s are not
transport proteins and thus cluster with a group of
soluble proteins that lack the transmembrane components
commonly found in other members of the family.
Structurally, RLIs have an N-terminal Fe-S domain and
two nucleotide binding domains which are arranged to
form two composite active sites in their interface
cleft. RLI is one of the most conserved enzymes between
archaea and eukaryotes with a sequence identity more
than 48%. The high degree of evolutionary conservation
suggests that RLI performs a central role in archaeal
and eukaryotic physiology.
Length = 255
Score = 35.8 bits (83), Expect = 0.014
Identities = 39/157 (24%), Positives = 66/157 (42%), Gaps = 33/157 (21%)
Query: 115 KPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSLGGTVSYASQEPW-----IFAATIR 169
+ Q+ ++G G GK++ L I+ +L+ + GK + W F +
Sbjct: 24 REGQVLGLVGPNGIGKSTALKILAGKLKPNLGK--------FDDPPDWDEILDEFRGSEL 75
Query: 170 QNILFGL------PYLRRRYADVI------RVCALQDDFDSLPNGDFTV-------VGER 210
QN L ++ +Y D+I +V L D D V V +R
Sbjct: 76 QNYFTKLLEGDVKVIVKPQYVDLIPKAVKGKVGELLKKKDERGKLDELVDQLELRHVLDR 135
Query: 211 GAS-LSGGQKARINLARAVYKNADIYLLDDPLSAVDM 246
LSGG+ R+ +A A+ ++AD Y D+P S +D+
Sbjct: 136 NIDQLSGGELQRVAIAAALARDADFYFFDEPSSYLDI 172
>gnl|CDD|215599 PLN03140, PLN03140, ABC transporter G family member; Provisional.
Length = 1470
Score = 36.4 bits (84), Expect = 0.016
Identities = 41/165 (24%), Positives = 72/165 (43%), Gaps = 35/165 (21%)
Query: 107 LNAVSITFKPKQLACIIGAIGAGKTSLLHI---------ILNELRIS---SGKVSLGGTV 154
L V+ F+P L ++G GAGKT+L+ + I ++RIS + +
Sbjct: 896 LREVTGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKKQETFARIS 955
Query: 155 SYASQ-----------EPWIFAATIRQNILFGLPYLRRRYADVIRVCALQD--DFDSLPN 201
Y Q E I++A +R LP + ++ V + + + D+L +
Sbjct: 956 GYCEQNDIHSPQVTVRESLIYSAFLR------LPKEVSKEEKMMFVDEVMELVELDNLKD 1009
Query: 202 GDFTVVGERGAS-LSGGQKARINLARAVYKNADIYLLDDPLSAVD 245
+VG G + LS Q+ R+ +A + N I +D+P S +D
Sbjct: 1010 ---AIVGLPGVTGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1051
>gnl|CDD|182980 PRK11124, artP, arginine transporter ATP-binding subunit;
Provisional.
Length = 242
Score = 35.4 bits (82), Expect = 0.016
Identities = 14/32 (43%), Positives = 22/32 (68%)
Query: 214 LSGGQKARINLARAVYKNADIYLLDDPLSAVD 245
LSGGQ+ R+ +ARA+ + L D+P +A+D
Sbjct: 142 LSGGQQQRVAIARALMMEPQVLLFDEPTAALD 173
>gnl|CDD|237917 PRK15134, PRK15134, microcin C ABC transporter ATP-binding protein
YejF; Provisional.
Length = 529
Score = 35.8 bits (83), Expect = 0.019
Identities = 16/43 (37%), Positives = 25/43 (58%)
Query: 212 ASLSGGQKARINLARAVYKNADIYLLDDPLSAVDMHVGKHLFE 254
A SGGQ+ RI +ARA+ + +LD+P S++D V +
Sbjct: 424 AEFSGGQRQRIAIARALILKPSLIILDEPTSSLDKTVQAQILA 466
Score = 28.9 bits (65), Expect = 2.8
Identities = 12/35 (34%), Positives = 24/35 (68%)
Query: 214 LSGGQKARINLARAVYKNADIYLLDDPLSAVDMHV 248
LSGG++ R+ +A A+ ++ + D+P +A+D+ V
Sbjct: 157 LSGGERQRVMIAMALLTRPELLIADEPTTALDVSV 191
>gnl|CDD|183080 PRK11300, livG, leucine/isoleucine/valine transporter ATP-binding
subunit; Provisional.
Length = 255
Score = 35.4 bits (82), Expect = 0.020
Identities = 13/48 (27%), Positives = 28/48 (58%)
Query: 105 LTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSLGG 152
L +N V++ + +++ +IG GAGKT++ + + + + G + L G
Sbjct: 19 LAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRG 66
>gnl|CDD|237456 PRK13641, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 287
Score = 35.2 bits (81), Expect = 0.024
Identities = 35/174 (20%), Positives = 70/174 (40%), Gaps = 36/174 (20%)
Query: 107 LNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSLGG-------------- 152
L+ +S + ++G G+GK++L+ L+ SSG +++ G
Sbjct: 23 LDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSGTITIAGYHITPETGNKNLKK 82
Query: 153 ---TVSYASQ--EPWIFAATIRQNILFGLPYL-------RRRYADVIRVCALQDDFDSLP 200
VS Q E +F T+ +++ FG + + ++ L +D
Sbjct: 83 LRKKVSLVFQFPEAQLFENTVLKDVEFGPKNFGFSEDEAKEKALKWLKKVGLSED----- 137
Query: 201 NGDFTVVGERGASLSGGQKARINLARAVYKNADIYLLDDPLSAVDMHVGKHLFE 254
++ + LSGGQ R+ +A + +I LD+P + +D K + +
Sbjct: 138 -----LISKSPFELSGGQMRRVAIAGVMAYEPEILCLDEPAAGLDPEGRKEMMQ 186
>gnl|CDD|233665 TIGR01978, sufC, FeS assembly ATPase SufC. SufC is part of the SUF
system, shown in E. coli to consist of six proteins and
believed to act in Fe-S cluster formation during
oxidative stress. SufC forms a complex with SufB and
SufD. SufC belongs to the ATP-binding cassette
transporter family (pfam00005) but is no longer thought
to be part of a transporter. The complex is reported as
cytosolic (PMID:12554644) or associated with the
membrane (PMID:11943156). The SUF system also includes a
cysteine desulfurase (SufS, enhanced by SufE) and a
probable iron-sulfur cluster assembly scaffold protein,
SufA [Biosynthesis of cofactors, prosthetic groups, and
carriers, Other].
Length = 243
Score = 34.9 bits (81), Expect = 0.027
Identities = 14/48 (29%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
Query: 107 LNAVSITFKPKQLACIIGAIGAGKTSLLHIILNE--LRISSGKVSLGG 152
L V++T K ++ I+G G+GK++L I ++SG + G
Sbjct: 16 LKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKG 63
>gnl|CDD|215634 PLN03211, PLN03211, ABC transporter G-25; Provisional.
Length = 659
Score = 35.2 bits (81), Expect = 0.032
Identities = 33/157 (21%), Positives = 75/157 (47%), Gaps = 20/157 (12%)
Query: 107 LNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISS--GKVSLGG---------TVS 155
LN V+ P ++ ++G G+GK++LL+ + ++ ++ G +
Sbjct: 84 LNGVTGMASPGEILAVLGPSGSGKSTLLNALAGRIQGNNFTGTILANNRKPTKQILKRTG 143
Query: 156 YASQEPWIFA-ATIRQNILF-GLPYLRRRYADVIRVCALQDDFDSL--PNGDFTVVGE-- 209
+ +Q+ ++ T+R+ ++F L L + ++ + L + T++G
Sbjct: 144 FVTQDDILYPHLTVRETLVFCSLLRLPKSLTKQEKILVAESVISELGLTKCENTIIGNSF 203
Query: 210 -RGASLSGGQKARINLARAVYKNADIYLLDDPLSAVD 245
RG +SGG++ R+++A + N + +LD+P S +D
Sbjct: 204 IRG--ISGGERKRVSIAHEMLINPSLLILDEPTSGLD 238
>gnl|CDD|234806 PRK00635, PRK00635, excinuclease ABC subunit A; Provisional.
Length = 1809
Score = 34.8 bits (80), Expect = 0.043
Identities = 16/43 (37%), Positives = 27/43 (62%), Gaps = 2/43 (4%)
Query: 204 FTVVGERGASLSGGQKARINLARAVYKNAD--IYLLDDPLSAV 244
+ +G+ +LS G+ R++LA+ + N IYLL+DPLS +
Sbjct: 1378 YITLGQEQDTLSDGEHYRLHLAKKISSNLTDIIYLLEDPLSGL 1420
Score = 27.5 bits (61), Expect = 9.0
Identities = 19/55 (34%), Positives = 29/55 (52%), Gaps = 3/55 (5%)
Query: 203 DFTVVGERGASLSGGQKARINLAR---AVYKNADIYLLDDPLSAVDMHVGKHLFE 254
D+ +G +SLSGG+ R+ LA A K +Y+LD+P + + H K L
Sbjct: 799 DYLPLGRPLSSLSGGEIQRLKLAYELLAPSKKPTLYVLDEPTTGLHTHDIKALIY 853
>gnl|CDD|182342 PRK10261, PRK10261, glutathione transporter ATP-binding protein;
Provisional.
Length = 623
Score = 34.1 bits (78), Expect = 0.071
Identities = 14/34 (41%), Positives = 24/34 (70%)
Query: 215 SGGQKARINLARAVYKNADIYLLDDPLSAVDMHV 248
SGGQ+ RI +ARA+ N + + D+ +SA+D+ +
Sbjct: 465 SGGQRQRICIARALALNPKVIIADEAVSALDVSI 498
>gnl|CDD|237454 PRK13634, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 290
Score = 33.5 bits (77), Expect = 0.076
Identities = 41/165 (24%), Positives = 73/165 (44%), Gaps = 42/165 (25%)
Query: 110 VSITFKPKQLACIIGAIGAGKTSLL-HIILNEL-RISSGKVSLGGTVSYASQ-------- 159
V+++ IIG G+GK++LL H LN L + +SG V++G V A +
Sbjct: 26 VNVSIPSGSYVAIIGHTGSGKSTLLQH--LNGLLQPTSGTVTIGERVITAGKKNKKLKPL 83
Query: 160 -----------EPWIFAATIRQNILFGLPY--------LRRRYADVIRVCALQDDFDSLP 200
E +F T+ ++I FG P +++ ++I + L ++ L
Sbjct: 84 RKKVGIVFQFPEHQLFEETVEKDICFG-PMNFGVSEEDAKQKAREMIELVGLPEEL--LA 140
Query: 201 NGDFTVVGERGASLSGGQKARINLARAVYKNADIYLLDDPLSAVD 245
F LSGGQ R+ +A + ++ +LD+P + +D
Sbjct: 141 RSPF--------ELSGGQMRRVAIAGVLAMEPEVLVLDEPTAGLD 177
>gnl|CDD|237894 PRK15064, PRK15064, ABC transporter ATP-binding protein;
Provisional.
Length = 530
Score = 33.7 bits (78), Expect = 0.095
Identities = 14/27 (51%), Positives = 17/27 (62%)
Query: 122 IIGAIGAGKTSLLHIILNELRISSGKV 148
IIG G GKT+LL ++ EL SG V
Sbjct: 350 IIGENGVGKTTLLRTLVGELEPDSGTV 376
Score = 33.3 bits (77), Expect = 0.12
Identities = 14/31 (45%), Positives = 23/31 (74%)
Query: 217 GQKARINLARAVYKNADIYLLDDPLSAVDMH 247
G K R+ LA+A++ N DI LLD+P + +D++
Sbjct: 159 GWKLRVLLAQALFSNPDILLLDEPTNNLDIN 189
Score = 30.6 bits (70), Expect = 0.80
Identities = 13/28 (46%), Positives = 19/28 (67%)
Query: 123 IGAIGAGKTSLLHIILNELRISSGKVSL 150
IGA G GK++ + I+ +L S+G VSL
Sbjct: 33 IGANGCGKSTFMKILGGDLEPSAGNVSL 60
>gnl|CDD|234003 TIGR02768, TraA_Ti, Ti-type conjugative transfer relaxase TraA.
This protein contains domains distinctive of a single
strand exonuclease (N-terminus, MobA/MobL, pfam03389) as
well as a helicase domain (central region, homologous to
the corresponding region of the F-type relaxase TraI,
TIGR02760). This protein likely fills the same role as
TraI(F), nicking (at the oriT site) and unwinding the
coiled plasmid prior to conjugative transfer.
Length = 744
Score = 33.6 bits (77), Expect = 0.099
Identities = 41/161 (25%), Positives = 62/161 (38%), Gaps = 18/161 (11%)
Query: 83 SNGKGH-VSLDNVTAQWSLQN--ADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILN 139
S +GH VS V A ++ AV +A ++G G GK+++L
Sbjct: 331 SQSQGHGVSPPIVDAAIDQHYRLSEEQYEAVRHVTGSGDIAVVVGRAGTGKSTMLK-AAR 389
Query: 140 ELRISSGKVSLGGTVSYASQEPWIFAATIRQNILFGLPYLRRRYADVIRVCALQDDFDSL 199
E ++G +G +S + E + I L L Y A + D L
Sbjct: 390 EAWEAAGYRVIGAALSGKAAEGLQAESGIESRTLASLEY------------AWANGRDLL 437
Query: 200 PNGDFTVVGERGASLSGGQKARINLARAVYKNADIYLLDDP 240
+ D V+ E G S Q AR+ L A A + L+ DP
Sbjct: 438 SDKDVLVIDEAGMVGS-RQMARV-LKEAEEAGAKVVLVGDP 476
>gnl|CDD|226622 COG4138, BtuD, ABC-type cobalamin transport system, ATPase
component [Coenzyme metabolism].
Length = 248
Score = 32.9 bits (75), Expect = 0.11
Identities = 38/143 (26%), Positives = 58/143 (40%), Gaps = 25/143 (17%)
Query: 122 IIGAIGAGKTSLLHIILNELRISSGKVSLGGTVSYASQEPWIFAATIR--------QNIL 173
++G GAGK++LL + + SG + G E W R Q
Sbjct: 30 LVGPNGAGKSTLL-ARMAGMTSGSGSIQFAG----QPLEAWSATELARHRAYLSQQQTPP 84
Query: 174 FGLP---YLRRRYADVIRVCALQDDFDSLPNGDFTVVGERGASLSGGQKARINLARAVYK 230
F +P YL D R L D +L D +G LSGG+ R+ LA V +
Sbjct: 85 FAMPVWHYLTLHQPDKTRTELLNDVAGALALDD--KLGRSTNQLSGGEWQRVRLAAVVLQ 142
Query: 231 -------NADIYLLDDPLSAVDM 246
+ LLD+P++++D+
Sbjct: 143 ITPDANPAGQLLLLDEPMNSLDV 165
>gnl|CDD|184131 PRK13546, PRK13546, teichoic acids export protein ATP-binding
subunit; Provisional.
Length = 264
Score = 33.3 bits (76), Expect = 0.11
Identities = 34/140 (24%), Positives = 66/140 (47%), Gaps = 5/140 (3%)
Query: 107 LNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSLGGTVSYASQEPWIFAA 166
L+ +S+ + ++G G+GK++L +II L + GKV G VS + +
Sbjct: 40 LDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLSPTVGKVDRNGEVSVIAISAGLSGQ 99
Query: 167 -TIRQNILFGLPYLRRRYADVIRVCALQDDFDSLPNGDFTVVGERGASLSGGQKARINLA 225
T +NI F + + + ++ + +F L G+F + + S G +A++ +
Sbjct: 100 LTGIENIEFKMLCMGFKRKEIKAMTPKIIEFSEL--GEF--IYQPVKKYSSGMRAKLGFS 155
Query: 226 RAVYKNADIYLLDDPLSAVD 245
+ N DI ++D+ LS D
Sbjct: 156 INITVNPDILVIDEALSVGD 175
>gnl|CDD|226592 COG4107, PhnK, ABC-type phosphonate transport system, ATPase
component [Inorganic ion transport and metabolism].
Length = 258
Score = 32.8 bits (75), Expect = 0.12
Identities = 45/182 (24%), Positives = 68/182 (37%), Gaps = 42/182 (23%)
Query: 110 VSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSL----GGTVS-YASQEP--- 161
VS P ++ I+G G+GKT+LL I L +G V+ G Y E
Sbjct: 25 VSFDLYPGEVLGIVGESGSGKTTLLKCISGRLTPDAGTVTYRMRDGQPRDLYTMSEAERR 84
Query: 162 ------WIFAATIRQNILFGLPYLR------------------RRYADVIRVCALQDDFD 197
W F + QN G LR R Y + IR A D+
Sbjct: 85 RLLRTEWGF---VHQNPRDG---LRMQVSAGGNIGERLMAIGARHYGN-IRAEAQ--DWL 135
Query: 198 SLPNGDFTVVGERGASLSGGQKARINLARAVYKNADIYLLDDPLSAVDMHVGKHLFEDCI 257
D + + + SGG + R+ +AR + + +D+P +D+ V L D +
Sbjct: 136 EEVEIDLDRIDDLPRTFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLL-DLL 194
Query: 258 SG 259
G
Sbjct: 195 RG 196
>gnl|CDD|184200 PRK13640, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 282
Score = 32.8 bits (75), Expect = 0.12
Identities = 40/164 (24%), Positives = 66/164 (40%), Gaps = 36/164 (21%)
Query: 107 LNAVSITFKPKQLACIIGAIGAGKTSLLHII--------LNELRISSGKVSLGGT----- 153
LN +S + +IG G+GK+++ +I +I+ ++L
Sbjct: 23 LNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGITLTAKTVWDI 82
Query: 154 ---VSYASQEP--WIFAATIRQNILFGL-------PYLRRRYADVIRVCALQDDFDSLPN 201
V Q P AT+ ++ FGL P + + DV+ + D DS P
Sbjct: 83 REKVGIVFQNPDNQFVGATVGDDVAFGLENRAVPRPEMIKIVRDVLADVGMLDYIDSEP- 141
Query: 202 GDFTVVGERGASLSGGQKARINLARAVYKNADIYLLDDPLSAVD 245
A+LSGGQK R+ +A + I +LD+ S +D
Sbjct: 142 ----------ANLSGGQKQRVAIAGILAVEPKIIILDESTSMLD 175
>gnl|CDD|213246 cd03279, ABC_sbcCD, ATP-binding cassette domain of sbcCD. SbcCD
and other Mre11/Rad50 (MR) complexes are implicated in
the metabolism of DNA ends. They cleave ends sealed by
hairpin structures and are thought to play a role in
removing protein bound to DNA termini.
Length = 213
Score = 32.6 bits (75), Expect = 0.13
Identities = 28/119 (23%), Positives = 44/119 (36%), Gaps = 21/119 (17%)
Query: 119 LACIIGAIGAGKTSLLHII----LNELRISSGKVSLGGTVSYASQEPWI-FAATIRQNIL 173
L I G GAGK+++L I + + +L + + F +
Sbjct: 30 LFLICGPTGAGKSTILDAITYALYGKTPRYGRQENLRSVFAPGEDTAEVSFTFQLGG--- 86
Query: 174 FGLPYLRRRYADVIRVCALQ-DDFDS---LPNGDFTVVGERGA-SLSGGQKARINLARA 227
++Y V R L D F LP G+F R +LSGG+ +L+ A
Sbjct: 87 -------KKY-RVERSRGLDYDQFTRIVLLPQGEFDRFLARPVSTLSGGETFLASLSLA 137
>gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication,
recombination, and repair].
Length = 908
Score = 33.2 bits (76), Expect = 0.15
Identities = 10/36 (27%), Positives = 17/36 (47%), Gaps = 6/36 (16%)
Query: 99 SLQNADLTLNAVSITFKPKQLACIIGAIGAGKTSLL 134
S ++ D+ + I+G GAGK+S+L
Sbjct: 13 SFKDIDIEKLF------DSGIFLIVGPNGAGKSSIL 42
>gnl|CDD|213238 cd03271, ABC_UvrA_II, ATP-binding cassette domain II of the
excision repair protein UvrA. Nucleotide excision
repair in eubacteria is a process that repairs DNA
damage by the removal of a 12-13-mer oligonucleotide
containing the lesion. Recognition and cleavage of the
damaged DNA is a multistep ATP-dependent reaction that
requires the UvrA, UvrB, and UvrC proteins. Both UvrA
and UvrB are ATPases, with UvrA having two ATP binding
sites, which have the characteristic signature of the
family of ABC proteins and UvrB having one ATP binding
site that is structurally related to that of helicases.
Length = 261
Score = 32.6 bits (75), Expect = 0.15
Identities = 52/206 (25%), Positives = 81/206 (39%), Gaps = 61/206 (29%)
Query: 107 LNAVSITFKPKQLACIIGAIGAGKTSLLHIIL-----NELRISSGKV----SLGGT---- 153
L + + L C+ G G+GK+SL++ L L + + + G
Sbjct: 11 LKNIDVDIPLGVLTCVTGVSGSGKSSLINDTLYPALARRLHLKKEQPGNHDRIEGLEHID 70
Query: 154 -VSYASQEPWI------FAAT-------IRQNILF-----GLPYLRR----RY-----AD 185
V Q P I AT IR+ LF G Y R RY AD
Sbjct: 71 KVIVIDQSP-IGRTPRSNPATYTGVFDEIRE--LFCEVCKGKRYNRETLEVRYKGKSIAD 127
Query: 186 VIR--VCALQDDFDSLPN-----------G-DFTVVGERGASLSGGQKARINLARAVYKN 231
V+ V + F+++P G + +G+ +LSGG+ RI LA+ + K
Sbjct: 128 VLDMTVEEALEFFENIPKIARKLQTLCDVGLGYIKLGQPATTLSGGEAQRIKLAKELSKR 187
Query: 232 AD---IYLLDDPLSAVDMHVGKHLFE 254
+ +Y+LD+P + + H K L E
Sbjct: 188 STGKTLYILDEPTTGLHFHDVKKLLE 213
>gnl|CDD|237453 PRK13633, PRK13633, cobalt transporter ATP-binding subunit;
Provisional.
Length = 280
Score = 32.4 bits (74), Expect = 0.21
Identities = 38/170 (22%), Positives = 69/170 (40%), Gaps = 38/170 (22%)
Query: 101 QNADLTLNAVSITFKPKQLACIIGAIGAGKTSLL-HIILNELRI-SSGKVSLGGTVSYAS 158
L L+ V++ K + I+G G+GK+++ H +N L I S GKV + G +
Sbjct: 20 STEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKH--MNALLIPSEGKVYVDGLDTSDE 77
Query: 159 QEPW----------------IFAATIRQNILFGLPYL-------RRRYADVIRVCALQDD 195
+ W I A + +++ FG L R R + ++ + +
Sbjct: 78 ENLWDIRNKAGMVFQNPDNQIVATIVEEDVAFGPENLGIPPEEIRERVDESLKKVGMYEY 137
Query: 196 FDSLPNGDFTVVGERGASLSGGQKARINLARAVYKNADIYLLDDPLSAVD 245
P+ LSGGQK R+ +A + + + D+P + +D
Sbjct: 138 RRHAPH-----------LLSGGQKQRVAIAGILAMRPECIIFDEPTAMLD 176
>gnl|CDD|233193 TIGR00929, VirB4_CagE, type IV secretion/conjugal transfer ATPase,
VirB4 family. Type IV secretion systems are found in
Gram-negative pathogens. They export proteins, DNA, or
complexes in different systems and are related to
plasmid conjugation systems. This model represents
related ATPases that include VirB4 in Agrobacterium
tumefaciens (DNA export) CagE in Helicobacter pylori
(protein export) and plasmid TraB (conjugation).
Length = 785
Score = 32.7 bits (75), Expect = 0.22
Identities = 9/23 (39%), Positives = 16/23 (69%)
Query: 120 ACIIGAIGAGKTSLLHIILNELR 142
I G G+GKT+LL+ +L +++
Sbjct: 437 TLIFGPTGSGKTTLLNFLLAQMQ 459
>gnl|CDD|183280 PRK11701, phnK, phosphonate C-P lyase system protein PhnK;
Provisional.
Length = 258
Score = 32.2 bits (74), Expect = 0.22
Identities = 14/40 (35%), Positives = 23/40 (57%)
Query: 110 VSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVS 149
VS P ++ I+G G+GKT+LL+ + L +G+V
Sbjct: 25 VSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPDAGEVH 64
>gnl|CDD|99707 cd00009, AAA, The AAA+ (ATPases Associated with a wide variety of
cellular Activities) superfamily represents an ancient
group of ATPases belonging to the ASCE (for additional
strand, catalytic E) division of the P-loop NTPase fold.
The ASCE division also includes ABC, RecA-like,
VirD4-like, PilT-like, and SF1/2 helicases. Members of
the AAA+ ATPases function as molecular chaperons, ATPase
subunits of proteases, helicases, or nucleic-acid
stimulated ATPases. The AAA+ proteins contain several
distinct features in addition to the conserved
alpha-beta-alpha core domain structure and the Walker A
and B motifs of the P-loop NTPases.
Length = 151
Score = 31.3 bits (71), Expect = 0.27
Identities = 10/28 (35%), Positives = 12/28 (42%)
Query: 121 CIIGAIGAGKTSLLHIILNELRISSGKV 148
+ G G GKT+L I NEL
Sbjct: 23 LLYGPPGTGKTTLARAIANELFRPGAPF 50
>gnl|CDD|213194 cd03227, ABC_Class2, ATP-binding cassette domain of non-transporter
proteins. ABC-type Class 2 contains systems involved in
cellular processes other than transport. These families
are characterized by the fact that the ABC subunit is
made up of duplicated, fused ABC modules (ABC2). No
known transmembrane proteins or domains are associated
with these proteins.
Length = 162
Score = 30.8 bits (70), Expect = 0.35
Identities = 15/45 (33%), Positives = 22/45 (48%), Gaps = 4/45 (8%)
Query: 214 LSGGQKARINLARAV----YKNADIYLLDDPLSAVDMHVGKHLFE 254
LSGG+K LA + K +Y+LD+ +D G+ L E
Sbjct: 78 LSGGEKELSALALILALASLKPRPLYILDEIDRGLDPRDGQALAE 122
>gnl|CDD|226459 COG3950, COG3950, Predicted ATP-binding protein involved in
virulence [General function prediction only].
Length = 440
Score = 31.4 bits (71), Expect = 0.43
Identities = 13/30 (43%), Positives = 18/30 (60%)
Query: 112 ITFKPKQLACIIGAIGAGKTSLLHIILNEL 141
ITF + I+G G+GKT++L I N L
Sbjct: 19 ITFGESETTIIVGPNGSGKTTVLDAIRNAL 48
>gnl|CDD|217424 pfam03205, MobB, Molybdopterin guanine dinucleotide synthesis
protein B. This protein contains a P-loop.
Length = 126
Score = 30.4 bits (69), Expect = 0.43
Identities = 17/80 (21%), Positives = 32/80 (40%), Gaps = 14/80 (17%)
Query: 122 IIGAIGAGKTSLLHIILNELR-------------ISSGKVSLGGTVSYAS-QEPWIFAAT 167
++G +GKT+L+ +LN L+ G++ G ++ S +EP
Sbjct: 5 VVGPKDSGKTTLIRKLLNYLKRRGYRVAVVKHLDHGQGEIDKPGKIAALSIEEPADGPEG 64
Query: 168 IRQNILFGLPYLRRRYADVI 187
Q L L R + ++
Sbjct: 65 FHQEEEMPLEELLSRLSYLV 84
>gnl|CDD|203260 pfam05496, RuvB_N, Holliday junction DNA helicase ruvB N-terminus.
The RuvB protein makes up part of the RuvABC revolvasome
which catalyzes the resolution of Holliday junctions
that arise during genetic recombination and DNA repair.
Branch migration is catalyzed by the RuvB protein that
is targeted to the Holliday junction by the structure
specific RuvA protein. This family contains the
N-terminal region of the protein.
Length = 231
Score = 30.9 bits (71), Expect = 0.49
Identities = 13/26 (50%), Positives = 17/26 (65%), Gaps = 4/26 (15%)
Query: 127 GAGKTSLLHIILNEL----RISSGKV 148
G GKT+L +II NE+ RI+SG
Sbjct: 60 GLGKTTLANIIANEMGVNIRITSGPA 85
>gnl|CDD|182852 PRK10938, PRK10938, putative molybdenum transport ATP-binding
protein ModF; Provisional.
Length = 490
Score = 31.5 bits (72), Expect = 0.49
Identities = 15/50 (30%), Positives = 25/50 (50%), Gaps = 3/50 (6%)
Query: 88 HVSLDNVTAQWSLQNADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHII 137
+ L+N + N L+ +S P + I+G GAGK++LL +I
Sbjct: 260 RIVLNNGVVSY---NDRPILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLI 306
>gnl|CDD|182336 PRK10253, PRK10253, iron-enterobactin transporter ATP-binding
protein; Provisional.
Length = 265
Score = 31.1 bits (70), Expect = 0.50
Identities = 37/152 (24%), Positives = 64/152 (42%), Gaps = 14/152 (9%)
Query: 109 AVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSLGG--TVSYASQEPWIFAA 166
+++ IIG G GK++LL + + + G V L G YAS+E
Sbjct: 25 NLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHIQHYASKEVARRIG 84
Query: 167 TIRQN------ILFGLPYLRRRYA-DVIRVCALQDDFDSL-----PNGDFTVVGERGASL 214
+ QN I R RY + ++D +++ G + + +L
Sbjct: 85 LLAQNATTPGDITVQELVARGRYPHQPLFTRWRKEDEEAVTKAMQATGITHLADQSVDTL 144
Query: 215 SGGQKARINLARAVYKNADIYLLDDPLSAVDM 246
SGGQ+ R +A + + I LLD+P + +D+
Sbjct: 145 SGGQRQRAWIAMVLAQETAIMLLDEPTTWLDI 176
>gnl|CDD|184208 PRK13649, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 280
Score = 30.9 bits (70), Expect = 0.52
Identities = 33/165 (20%), Positives = 66/165 (40%), Gaps = 42/165 (25%)
Query: 110 VSITFKPKQLACIIGAIGAGKTSLLHIILNELRI-SSGKVSLGGTVSYASQ--------- 159
V++T + IG G+GK++++ + LN L + + G V + T+ ++
Sbjct: 26 VNLTIEDGSYTAFIGHTGSGKSTIMQL-LNGLHVPTQGSVRVDDTLITSTSKNKDIKQIR 84
Query: 160 ----------EPWIFAATIRQNILFGLPY--------LRRRYADVIRVCALQDD-FDSLP 200
E +F T+ +++ FG P + + + + + F+ P
Sbjct: 85 KKVGLVFQFPESQLFEETVLKDVAFG-PQNFGVSQEEAEALAREKLALVGISESLFEKNP 143
Query: 201 NGDFTVVGERGASLSGGQKARINLARAVYKNADIYLLDDPLSAVD 245
LSGGQ R+ +A + I +LD+P + +D
Sbjct: 144 -----------FELSGGQMRRVAIAGILAMEPKILVLDEPTAGLD 177
>gnl|CDD|233062 TIGR00630, uvra, excinuclease ABC, A subunit. This family is a
member of the ABC transporter superfamily of proteins of
which all members for which functions are known except
the UvrA proteins are involved in the transport of
material through membranes. UvrA orthologs are involved
in the recognition of DNA damage as a step in nucleotide
excision repair. This family is based on the
phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis,
Stanford University) [DNA metabolism, DNA replication,
recombination, and repair].
Length = 925
Score = 31.5 bits (72), Expect = 0.54
Identities = 17/50 (34%), Positives = 28/50 (56%), Gaps = 3/50 (6%)
Query: 208 GERGASLSGGQKARINLARAVYKNAD---IYLLDDPLSAVDMHVGKHLFE 254
G+ +LSGG+ RI LA+ + K + +Y+LD+P + + K L E
Sbjct: 824 GQPATTLSGGEAQRIKLAKELSKRSTGRTLYILDEPTTGLHFDDIKKLLE 873
Score = 29.2 bits (66), Expect = 3.0
Identities = 9/32 (28%), Positives = 18/32 (56%)
Query: 107 LNAVSITFKPKQLACIIGAIGAGKTSLLHIIL 138
L ++++ CI G G+GK++L++ L
Sbjct: 624 LKNITVSIPLGLFTCITGVSGSGKSTLINDTL 655
>gnl|CDD|222160 pfam13476, AAA_23, AAA domain.
Length = 204
Score = 30.6 bits (69), Expect = 0.55
Identities = 10/25 (40%), Positives = 14/25 (56%), Gaps = 1/25 (4%)
Query: 110 VSITFKPKQLACIIGAIGAGKTSLL 134
+ I F L I G G+GKT++L
Sbjct: 13 LEIDFSKG-LTLIYGPNGSGKTTIL 36
>gnl|CDD|235150 PRK03695, PRK03695, vitamin B12-transporter ATPase; Provisional.
Length = 248
Score = 30.3 bits (69), Expect = 0.75
Identities = 38/167 (22%), Positives = 64/167 (38%), Gaps = 41/167 (24%)
Query: 107 LNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSLGGTV------------ 154
L +S + ++ ++G GAGK++LL + L SG + G
Sbjct: 12 LGPLSAEVRAGEILHLVGPNGAGKSTLLARMAGLLP-GSGSIQFAGQPLEAWSAAELARH 70
Query: 155 -SYASQEPWIFAATIRQNILFGLP---YLRRRYADVIRVCALQDDFDSLPN----GDFTV 206
+Y SQ+ Q F +P YL D R A+ + + D
Sbjct: 71 RAYLSQQ---------QTPPFAMPVFQYLTLHQPDKTRTEAVASALNEVAEALGLDDKL- 120
Query: 207 VGERGAS-LSGGQKARINLA-------RAVYKNADIYLLDDPLSAVD 245
R + LSGG+ R+ LA + + LLD+P++++D
Sbjct: 121 --GRSVNQLSGGEWQRVRLAAVVLQVWPDINPAGQLLLLDEPMNSLD 165
>gnl|CDD|221957 pfam13175, AAA_15, AAA ATPase domain. This family of domains
contain a P-loop motif that is characteristic of the AAA
superfamily.
Length = 320
Score = 30.5 bits (69), Expect = 0.86
Identities = 11/34 (32%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
Query: 108 NAVSITFKPKQLACIIGAIGAGKTSLLHIILNEL 141
N I+ + IIG G+GKT++L + N
Sbjct: 14 NLEEISLNEG-INVIIGENGSGKTTILEALDNLK 46
>gnl|CDD|238836 cd01673, dNK, Deoxyribonucleoside kinase (dNK) catalyzes the
phosphorylation of deoxyribonucleosides to yield
corresponding monophosphates (dNMPs). This family
consists of various deoxynucleoside kinases including
deoxyribo- cytidine (EC 2.7.1.74), guanosine (EC
2.7.1.113), adenosine (EC 2.7.1.76), and thymidine (EC
2.7.1.21) kinases. They are key enzymes in the salvage
of deoxyribonucleosides originating from extra- or
intracellular breakdown of DNA.
Length = 193
Score = 29.9 bits (68), Expect = 0.86
Identities = 8/21 (38%), Positives = 12/21 (57%)
Query: 121 CIIGAIGAGKTSLLHIILNEL 141
+ G IGAGK++L + L
Sbjct: 3 VVEGNIGAGKSTLAKELAEHL 23
>gnl|CDD|234619 PRK00080, ruvB, Holliday junction DNA helicase RuvB; Reviewed.
Length = 328
Score = 30.5 bits (70), Expect = 0.92
Identities = 13/24 (54%), Positives = 17/24 (70%), Gaps = 4/24 (16%)
Query: 127 GAGKTSLLHIILNEL----RISSG 146
G GKT+L +II NE+ RI+SG
Sbjct: 61 GLGKTTLANIIANEMGVNIRITSG 84
>gnl|CDD|129721 TIGR00635, ruvB, Holliday junction DNA helicase, RuvB subunit. All
proteins in this family for which functions are known
are 5'-3' DNA helicases that, as part of a complex with
RuvA homologs serve as a 5'-3' Holliday junction
helicase. RuvA specifically binds Holliday junctions as
a sandwich of two tetramers and maintains the
configuration of the junction. It forms a complex with
two hexameric rings of RuvB, the subunit that contains
helicase activity. The complex drives ATP-dependent
branch migration of the Holliday junction recombination
intermediate. The endonuclease RuvC resolves junctions
[DNA metabolism, DNA replication, recombination, and
repair].
Length = 305
Score = 30.3 bits (69), Expect = 0.95
Identities = 15/29 (51%), Positives = 19/29 (65%), Gaps = 4/29 (13%)
Query: 122 IIGAIGAGKTSLLHIILNE----LRISSG 146
+ G G GKT+L HII NE L+I+SG
Sbjct: 35 LYGPPGLGKTTLAHIIANEMGVNLKITSG 63
>gnl|CDD|237358 PRK13351, PRK13351, elongation factor G; Reviewed.
Length = 687
Score = 30.7 bits (70), Expect = 0.99
Identities = 13/33 (39%), Positives = 17/33 (51%), Gaps = 4/33 (12%)
Query: 122 IIGAIGAGKTSLLHIILNELRISSGKVSLGGTV 154
I+ I AGKT+L IL +GK+ G V
Sbjct: 13 ILAHIDAGKTTLTERILFY----TGKIHKMGEV 41
>gnl|CDD|184134 PRK13549, PRK13549, xylose transporter ATP-binding subunit;
Provisional.
Length = 506
Score = 30.3 bits (69), Expect = 1.0
Identities = 39/175 (22%), Positives = 65/175 (37%), Gaps = 60/175 (34%)
Query: 107 LNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSLGGTVSYASQEPWIF-- 164
L+ VS+ + ++ + G GAGK++L+ KV L G + + E I
Sbjct: 21 LDNVSLKVRAGEIVSLCGENGAGKSTLM------------KV-LSGVYPHGTYEGEIIFE 67
Query: 165 -----AATIR-----------------------QNILFG---LPYLRRRYADVIRVCA-- 191
A+ IR +NI G P Y +
Sbjct: 68 GEELQASNIRDTERAGIAIIHQELALVKELSVLENIFLGNEITPGGIMDYDAMYLRAQKL 127
Query: 192 ---LQDDFDSLPNGDFTVVGERGASLSGGQKARINLARAVYKNADIYLLDDPLSA 243
L+ D + P T VG L GQ+ + +A+A+ K A + +LD+P ++
Sbjct: 128 LAQLKLDIN--PA---TPVGN----LGLGQQQLVEIAKALNKQARLLILDEPTAS 173
Score = 28.4 bits (64), Expect = 4.5
Identities = 13/34 (38%), Positives = 20/34 (58%)
Query: 212 ASLSGGQKARINLARAVYKNADIYLLDDPLSAVD 245
A LSGG + + LA+ + N I +LD+P +D
Sbjct: 404 ARLSGGNQQKAVLAKCLLLNPKILILDEPTRGID 437
>gnl|CDD|221970 pfam13191, AAA_16, AAA ATPase domain. This family of domains
contain a P-loop motif that is characteristic of the AAA
superfamily.
Length = 154
Score = 29.5 bits (66), Expect = 1.0
Identities = 12/34 (35%), Positives = 17/34 (50%)
Query: 116 PKQLACIIGAIGAGKTSLLHIILNELRISSGKVS 149
+ G G GKTSLL +L L +++GK
Sbjct: 23 GPPSVLLTGPSGTGKTSLLRELLEGLLVAAGKCD 56
>gnl|CDD|225164 COG2255, RuvB, Holliday junction resolvasome, helicase subunit [DNA
replication, recombination, and repair].
Length = 332
Score = 30.2 bits (69), Expect = 1.0
Identities = 15/31 (48%), Positives = 19/31 (61%), Gaps = 4/31 (12%)
Query: 122 IIGAIGAGKTSLLHIILNEL----RISSGKV 148
+ G G GKT+L HII NEL +I+SG
Sbjct: 57 LFGPPGLGKTTLAHIIANELGVNLKITSGPA 87
>gnl|CDD|238547 cd01127, TrwB, Bacterial conjugation protein TrwB, ATP binding
domain. TrwB is a homohexamer encoded by conjugative
plasmids in Gram-negative bacteria. TrwB also has an all
alpha domain which has been hypothesized to be
responsible for DNA binding. TrwB is a component of Type
IV secretion and is responsible for the horizontal
transfer of DNA between bacteria.
Length = 410
Score = 30.0 bits (68), Expect = 1.4
Identities = 9/28 (32%), Positives = 14/28 (50%)
Query: 121 CIIGAIGAGKTSLLHIILNELRISSGKV 148
IIG G GKT+ + +L +R +
Sbjct: 46 MIIGTTGTGKTTQIRELLASIRARGDRA 73
>gnl|CDD|234274 TIGR03594, GTPase_EngA, ribosome-associated GTPase EngA. EngA
(YfgK, Der) is a ribosome-associated essential GTPase
with a duplication of its GTP-binding domain. It is
broadly to universally distributed among bacteria. It
appears to function in ribosome biogenesis or stability
[Protein synthesis, Other].
Length = 429
Score = 29.7 bits (68), Expect = 1.6
Identities = 21/81 (25%), Positives = 32/81 (39%), Gaps = 7/81 (8%)
Query: 62 DRVLNFLLLGEHEPRKINSVHSNGKGHVSLDNVTAQWSLQNADLTLNAVSITFKPKQLAC 121
F LG EP I++ H G G + LD + + + I
Sbjct: 124 AVAAEFYSLGFGEPIPISAEHGRGIGDL-LDAILELLPEEEEEEEEEDGPIKI------A 176
Query: 122 IIGAIGAGKTSLLHIILNELR 142
IIG GK++L++ +L E R
Sbjct: 177 IIGRPNVGKSTLVNALLGEER 197
>gnl|CDD|220988 pfam11119, DUF2633, Protein of unknown function (DUF2633). This
family is conserved largely in the Bacillaceae family.
Several members are named as YfgG. The function is not
known.
Length = 59
Score = 27.4 bits (61), Expect = 1.6
Identities = 10/21 (47%), Positives = 10/21 (47%)
Query: 39 FTTRMALFCTLTSFIFFGGRL 59
RM L SFI F GRL
Sbjct: 5 KNGRMTKIVLLISFIIFFGRL 25
>gnl|CDD|220739 pfam10412, TrwB_AAD_bind, Type IV secretion-system coupling protein
DNA-binding domain. The plasmid conjugative coupling
protein TrwB forms hexamers from six structurally very
similar protomers. This hexamer contains a central
channel running from the cytosolic pole (made up by the
AADs) to the membrane pole ending at the transmembrane
pore shaped by 12 transmembrane helices, rendering an
overall mushroom-like structure. The TrwB_AAD (all-alpha
domain) domain appears to be the DNA-binding domain of
the structure. TrwB, a basic integral inner-membrane
nucleoside-triphosphate-binding protein, is the
structural prototype for the type IV secretion system
coupling proteins, a family of proteins essential for
macromolecular transport between cells and export.
Length = 386
Score = 29.9 bits (68), Expect = 1.6
Identities = 13/40 (32%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Query: 104 DLTLNAVSITFK-PKQLACIIGAIGAGKTSLLHIILNELR 142
LT+ V + + Q I+G G GKT L +L+++R
Sbjct: 1 PLTIAGVPLPRRSETQHILIVGTTGTGKTQALRELLDQIR 40
>gnl|CDD|217416 pfam03193, DUF258, Protein of unknown function, DUF258.
Length = 161
Score = 29.1 bits (66), Expect = 1.6
Identities = 11/33 (33%), Positives = 22/33 (66%)
Query: 117 KQLACIIGAIGAGKTSLLHIILNELRISSGKVS 149
+ + + G G GK++LL+ +L EL + +G++S
Sbjct: 35 GKTSVLAGQSGVGKSTLLNALLPELDLRTGEIS 67
>gnl|CDD|184130 PRK13545, tagH, teichoic acids export protein ATP-binding subunit;
Provisional.
Length = 549
Score = 29.5 bits (66), Expect = 2.0
Identities = 37/150 (24%), Positives = 68/150 (45%), Gaps = 25/150 (16%)
Query: 107 LNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSLGGTVSYASQEPWIFAA 166
LN +S ++ IIG G+GK++L ++I + G V + G+ + + I +
Sbjct: 40 LNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTMPNKGTVDIKGSAALIA----ISSG 95
Query: 167 -----TIRQNI-----LFGLPYLRRRYADVI-RVCALQDDFDSLPNGDFTVVGERGASLS 215
T +NI + GL + + ++I + D G F + + + S
Sbjct: 96 LNGQLTGIENIELKGLMMGLT--KEKIKEIIPEIIEFADI------GKF--IYQPVKTYS 145
Query: 216 GGQKARINLARAVYKNADIYLLDDPLSAVD 245
G K+R+ A +V+ N DI ++D+ LS D
Sbjct: 146 SGMKSRLGFAISVHINPDILVIDEALSVGD 175
>gnl|CDD|130262 TIGR01194, cyc_pep_trnsptr, cyclic peptide transporter. This model
describes cyclic peptide transporter in bacteria.
Bacteria have elaborate pathways for the production of
toxins and secondary metabolites. Many such compounds,
including syringomycin and pyoverdine are synthesized on
non-ribosomal templates consisting of a multienzyme
complex. On several occasions the proteins of the
complex and transporter protein are present on the same
operon. Often times these compounds cross the biological
membrane by specific transporters. Syringomycin is an
amphipathic, cylclic lipodepsipeptide when inserted into
host causes formation of channels, permeable to variety
of cations. On the other hand, pyoverdine is a cyclic
octa-peptidyl dihydroxyquinoline, which is efficient in
sequestering iron for uptake [Transport and binding
proteins, Amino acids, peptides and amines, Transport
and binding proteins, Other].
Length = 555
Score = 29.5 bits (66), Expect = 2.2
Identities = 32/144 (22%), Positives = 57/144 (39%), Gaps = 16/144 (11%)
Query: 107 LNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSLGGT-VSYASQEPW--- 162
L + + + I+G G GK++L + G++ L G VS S++ +
Sbjct: 358 LGPIDLRIAQGDIVFIVGENGCGKSTLAKLFCGLYIPQEGEILLDGAAVSADSRDDYRDL 417
Query: 163 ---IFAATIRQNILFGLPYLRRRYAD----VIRVCALQDDFDSLPNGDFTVVGERGASLS 215
IFA + L G D ++ + D + +G F+ +LS
Sbjct: 418 FSAIFADFHLFDDLIGPDEGEHASLDNAQQYLQRLEIADKV-KIEDGGFSTT----TALS 472
Query: 216 GGQKARINLARAVYKNADIYLLDD 239
GQ+ R+ L A ++ I L D+
Sbjct: 473 TGQQKRLALICAWLEDRPILLFDE 496
>gnl|CDD|217051 pfam02463, SMC_N, RecF/RecN/SMC N terminal domain. This domain is
found at the N terminus of SMC proteins. The SMC
(structural maintenance of chromosomes) superfamily
proteins have ATP-binding domains at the N- and
C-termini, and two extended coiled-coil domains separated
by a hinge in the middle. The eukaryotic SMC proteins
form two kind of heterodimers: the SMC1/SMC3 and the
SMC2/SMC4 types. These heterodimers constitute an
essential part of higher order complexes, which are
involved in chromatin and DNA dynamics. This family also
includes the RecF and RecN proteins that are involved in
DNA metabolism and recombination.
Length = 1162
Score = 29.6 bits (66), Expect = 2.2
Identities = 17/43 (39%), Positives = 27/43 (62%), Gaps = 5/43 (11%)
Query: 213 SLSGGQKARINLA--RAV--YKNADIYLLDDPLSAVD-MHVGK 250
+LSGG+K + LA A+ Y+ A YLLD+ +A+D +V +
Sbjct: 1078 NLSGGEKTLVALALIFAIQKYRPAPFYLLDEIDAALDDQNVSR 1120
>gnl|CDD|239386 cd03112, CobW_like, The function of this protein family is unkown.
The amino acid sequence of YjiA protein in E. coli
contains several conserved motifs that characterizes it
as a P-loop GTPase. YijA gene is among the genes
significantly induced in response to DNA-damage caused
by mitomycin. YijA gene is a homologue of the CobW gene
which encodes the cobalamin synthesis protein/P47K.
Length = 158
Score = 28.4 bits (64), Expect = 2.3
Identities = 11/17 (64%), Positives = 14/17 (82%)
Query: 124 GAIGAGKTSLLHIILNE 140
G +GAGKT+LL+ IL E
Sbjct: 7 GFLGAGKTTLLNHILTE 23
>gnl|CDD|225982 COG3451, VirB4, Type IV secretory pathway, VirB4 components
[Intracellular trafficking and secretion].
Length = 796
Score = 29.3 bits (66), Expect = 2.5
Identities = 11/22 (50%), Positives = 13/22 (59%)
Query: 121 CIIGAIGAGKTSLLHIILNELR 142
IIG GAGKT LL +L +
Sbjct: 440 LIIGPTGAGKTVLLSFLLAQAL 461
>gnl|CDD|223256 COG0178, UvrA, Excinuclease ATPase subunit [DNA replication,
recombination, and repair].
Length = 935
Score = 29.1 bits (66), Expect = 2.9
Identities = 12/31 (38%), Positives = 18/31 (58%), Gaps = 2/31 (6%)
Query: 212 ASLSGGQKARINLARAVYKNAD--IYLLDDP 240
+LSGG+ RI LA + +Y+LD+P
Sbjct: 480 GTLSGGEAQRIRLATQIGSGLTGVLYVLDEP 510
Score = 28.7 bits (65), Expect = 3.6
Identities = 12/31 (38%), Positives = 21/31 (67%), Gaps = 3/31 (9%)
Query: 213 SLSGGQKARINLARAVYKNAD---IYLLDDP 240
+LSGG+ R+ LA+ + K + +Y+LD+P
Sbjct: 822 TLSGGEAQRVKLAKELSKRSTGKTLYILDEP 852
>gnl|CDD|236688 PRK10418, nikD, nickel transporter ATP-binding protein NikD;
Provisional.
Length = 254
Score = 28.5 bits (64), Expect = 3.1
Identities = 19/66 (28%), Positives = 33/66 (50%), Gaps = 4/66 (6%)
Query: 110 VSITFKPKQLACIIGAIGAGKT----SLLHIILNELRISSGKVSLGGTVSYASQEPWIFA 165
VS+T + ++ ++G G+GK+ + L I+ +R ++G+V L G
Sbjct: 22 VSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDGKPVAPCALRGRKI 81
Query: 166 ATIRQN 171
ATI QN
Sbjct: 82 ATIMQN 87
>gnl|CDD|206733 cd04170, EF-G_bact, Elongation factor G (EF-G) family.
Translocation is mediated by EF-G (also called
translocase). The structure of EF-G closely resembles
that of the complex between EF-Tu and tRNA. This is an
example of molecular mimicry; a protein domain evolved
so that it mimics the shape of a tRNA molecule. EF-G in
the GTP form binds to the ribosome, primarily through
the interaction of its EF-Tu-like domain with the 50S
subunit. The binding of EF-G to the ribosome in this
manner stimulates the GTPase activity of EF-G. On GTP
hydrolysis, EF-G undergoes a conformational change that
forces its arm deeper into the A site on the 30S
subunit. To accommodate this domain, the peptidyl-tRNA
in the A site moves to the P site, carrying the mRNA and
the deacylated tRNA with it. The ribosome may be
prepared for these rearrangements by the initial binding
of EF-G as well. The dissociation of EF-G leaves the
ribosome ready to accept the next aminoacyl-tRNA into
the A site. This group contains only bacterial members.
Length = 268
Score = 28.7 bits (65), Expect = 3.2
Identities = 14/41 (34%), Positives = 20/41 (48%), Gaps = 2/41 (4%)
Query: 122 IIGAIGAGKTSLLHIILNELRISS--GKVSLGGTVSYASQE 160
++G G+GKT+L +L G+V G TVS E
Sbjct: 4 LVGHSGSGKTTLAEALLYATGAIDRLGRVEDGNTVSDYDPE 44
>gnl|CDD|144046 pfam00308, Bac_DnaA, Bacterial dnaA protein.
Length = 219
Score = 28.4 bits (64), Expect = 3.3
Identities = 26/79 (32%), Positives = 32/79 (40%), Gaps = 17/79 (21%)
Query: 122 IIGAIGAGKTSLLHIILNE-LRISSGKVSLGGTVSYASQEP--WIFAATIRQNIL--FGL 176
I G +G GKT LLH I N LR V Y + E F +R N + F
Sbjct: 39 IYGGVGLGKTHLLHAIGNYALRNFPNL-----RVVYLTSEEFLNDFVDALRDNKIEAFKK 93
Query: 177 PYLRRRYADVIRVCALQDD 195
Y R D++ L DD
Sbjct: 94 SY---RNVDLL----LIDD 105
>gnl|CDD|129705 TIGR00618, sbcc, exonuclease SbcC. All proteins in this family for
which functions are known are part of an exonuclease
complex with sbcD homologs. This complex is involved in
the initiation of recombination to regulate the levels
of palindromic sequences in DNA. This family is based on
the phylogenomic analysis of JA Eisen (1999, Ph.D.
Thesis, Stanford University) [DNA metabolism, DNA
replication, recombination, and repair].
Length = 1042
Score = 28.8 bits (64), Expect = 3.7
Identities = 10/19 (52%), Positives = 12/19 (63%)
Query: 119 LACIIGAIGAGKTSLLHII 137
+ I G GAGKT+LL I
Sbjct: 28 IFLICGKTGAGKTTLLDAI 46
>gnl|CDD|177661 PLN00023, PLN00023, GTP-binding protein; Provisional.
Length = 334
Score = 28.3 bits (63), Expect = 3.8
Identities = 12/33 (36%), Positives = 21/33 (63%)
Query: 122 IIGAIGAGKTSLLHIILNELRISSGKVSLGGTV 154
++G G GK+SL+H+I+ I+ ++G TV
Sbjct: 26 VVGDSGVGKSSLVHLIVKGSSIARPPQTIGCTV 58
>gnl|CDD|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional.
Length = 880
Score = 28.5 bits (64), Expect = 4.6
Identities = 10/17 (58%), Positives = 13/17 (76%)
Query: 122 IIGAIGAGKTSLLHIIL 138
IIG G+GK+S+L IL
Sbjct: 28 IIGQNGSGKSSILEAIL 44
>gnl|CDD|224260 COG1341, COG1341, Predicted GTPase or GTP-binding protein [General
function prediction only].
Length = 398
Score = 28.1 bits (63), Expect = 4.9
Identities = 11/55 (20%), Positives = 25/55 (45%), Gaps = 14/55 (25%)
Query: 122 IIGAIGAGKTSLLHIILNELRISSGK-------------VSLGGTVSYASQEPWI 163
++G + +GK++L + N+L ++ G+ + G +S A E +
Sbjct: 78 VVGPVDSGKSTLTTYLANKL-LARGRKVAIIDADVGQSEIGPPGFISLAFPESPV 131
>gnl|CDD|206747 cd01854, YjeQ_EngC, Ribosomal interacting GTPase YjeQ/EngC, a
circularly permuted subfamily of the Ras GTPases. YjeQ
(YloQ in Bacillus subtilis) is a ribosomal small
subunit-dependent GTPase; hence also known as RsgA. YjeQ
is a late-stage ribosomal biogenesis factor involved in
the 30S subunit maturation, and it represents a protein
family whose members are broadly conserved in bacteria
and have been shown to be essential to the growth of E.
coli and B. subtilis. Proteins of the YjeQ family
contain all sequence motifs typical of the vast class of
P-loop-containing GTPases, but show a circular
permutation, with a G4-G1-G3 pattern of motifs as
opposed to the regular G1-G3-G4 pattern seen in most
GTPases. All YjeQ family proteins display a unique
domain architecture, which includes an N-terminal
OB-fold RNA-binding domain, the central permuted GTPase
domain, and a zinc knuckle-like C-terminal cysteine
domain.
Length = 211
Score = 27.7 bits (63), Expect = 5.2
Identities = 13/36 (36%), Positives = 25/36 (69%), Gaps = 1/36 (2%)
Query: 114 FKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVS 149
K K + ++G G GK++LL+ +L EL +++G++S
Sbjct: 83 LKGK-TSVLVGQSGVGKSTLLNALLPELVLATGEIS 117
>gnl|CDD|223666 COG0593, DnaA, ATPase involved in DNA replication initiation [DNA
replication, recombination, and repair].
Length = 408
Score = 28.0 bits (63), Expect = 5.6
Identities = 11/21 (52%), Positives = 12/21 (57%)
Query: 122 IIGAIGAGKTSLLHIILNELR 142
I G +G GKT LL I NE
Sbjct: 118 IYGGVGLGKTHLLQAIGNEAL 138
>gnl|CDD|206648 cd00882, Ras_like_GTPase, Rat sarcoma (Ras)-like superfamily of
small guanosine triphosphatases (GTPases). Ras-like
GTPase superfamily. The Ras-like superfamily of small
GTPases consists of several families with an extremely
high degree of structural and functional similarity. The
Ras superfamily is divided into at least four families
in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families.
This superfamily also includes proteins like the GTP
translation factors, Era-like GTPases, and G-alpha chain
of the heterotrimeric G proteins. Members of the Ras
superfamily regulate a wide variety of cellular
functions: the Ras family regulates gene expression, the
Rho family regulates cytoskeletal reorganization and
gene expression, the Rab and Sar1/Arf families regulate
vesicle trafficking, and the Ran family regulates
nucleocytoplasmic transport and microtubule
organization. The GTP translation factor family
regulates initiation, elongation, termination, and
release in translation, and the Era-like GTPase family
regulates cell division, sporulation, and DNA
replication. Members of the Ras superfamily are
identified by the GTP binding site, which is made up of
five characteristic sequence motifs, and the switch I
and switch II regions.
Length = 161
Score = 27.4 bits (61), Expect = 5.8
Identities = 8/20 (40%), Positives = 13/20 (65%)
Query: 121 CIIGAIGAGKTSLLHIILNE 140
++G G GK+SLL+ +L
Sbjct: 1 VVVGRGGVGKSSLLNALLGG 20
>gnl|CDD|176642 cd00457, PEBP, PhosphatidylEthanolamine-Binding Protein (PEBP)
domain. PhosphatidylEthanolamine-Binding Proteins
(PEBPs) are represented in all three major phylogenetic
divisions (eukaryotes, bacteria, archaea). A number of
biological roles for members of the PEBP family include
serine protease inhibition, membrane biogenesis,
regulation of flowering plant stem architecture, and
Raf-1 kinase inhibition. Although their overall
structures are similar, the members of the PEBP family
bind very different substrates including phospholipids,
opioids, and hydrophobic odorant molecules as well as
having different oligomerization states
(monomer/dimer/tetramer).
Length = 159
Score = 27.4 bits (61), Expect = 5.9
Identities = 22/79 (27%), Positives = 28/79 (35%), Gaps = 13/79 (16%)
Query: 189 VCALQDDFDSLPNGDFTVVGERGASLSGGQKARINLARAVYKNA-------------DIY 235
V + + SL N DF V L GG K N VY +Y
Sbjct: 61 VYGIPANKTSLSNDDFVVTDNGKGGLQGGFKYGKNRGGTVYIGPRPPLGHGPHRYFFQVY 120
Query: 236 LLDDPLSAVDMHVGKHLFE 254
LD+PL + G+ FE
Sbjct: 121 ALDEPLDRSKLGDGRTKFE 139
>gnl|CDD|234175 TIGR03348, VI_IcmF, type VI secretion protein IcmF. Members of
this protein family are IcmF homologs and tend to be
associated with type VI secretion systems [Cellular
processes, Pathogenesis].
Length = 1169
Score = 28.1 bits (63), Expect = 6.0
Identities = 8/14 (57%), Positives = 11/14 (78%)
Query: 122 IIGAIGAGKTSLLH 135
+IG G+GKT+LL
Sbjct: 116 VIGPPGSGKTTLLQ 129
>gnl|CDD|184377 PRK13894, PRK13894, conjugal transfer ATPase TrbB; Provisional.
Length = 319
Score = 27.8 bits (62), Expect = 6.1
Identities = 10/20 (50%), Positives = 17/20 (85%)
Query: 122 IIGAIGAGKTSLLHIILNEL 141
+IG G+GKT+L++ I+NE+
Sbjct: 153 VIGGTGSGKTTLVNAIINEM 172
>gnl|CDD|222036 pfam13304, AAA_21, AAA domain.
Length = 256
Score = 27.4 bits (60), Expect = 6.9
Identities = 15/60 (25%), Positives = 23/60 (38%), Gaps = 2/60 (3%)
Query: 119 LACIIGAIGAGKTSLLHII--LNELRISSGKVSLGGTVSYASQEPWIFAATIRQNILFGL 176
L IIG G+GK++LL + L L + G V + I + F +
Sbjct: 1 LNVIIGPNGSGKSNLLKALALLLLLLSLGLTLDRGLNVGIKLLPFLLDENEIEIPLEFEI 60
>gnl|CDD|224084 COG1162, COG1162, Predicted GTPases [General function prediction
only].
Length = 301
Score = 27.6 bits (62), Expect = 7.0
Identities = 24/105 (22%), Positives = 45/105 (42%), Gaps = 16/105 (15%)
Query: 59 LSTDRVLNFLLLGEH---EPR----KINSVHSNGKGHVSLDNVTAQW-------SLQNAD 104
+T+ + +L+L E EP KI+ + L S +N D
Sbjct: 94 FNTNLLDRYLVLAEAGGIEPVIVLNKIDLLDDEEAAVKELLREYEDIGYPVLFVSAKNGD 153
Query: 105 LTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVS 149
L ++ K + ++G G GK++L++ +L EL +G++S
Sbjct: 154 G-LEELAELLAGK-ITVLLGQSGVGKSTLINALLPELNQKTGEIS 196
>gnl|CDD|223455 COG0378, HypB, Ni2+-binding GTPase involved in regulation of
expression and maturation of urease and hydrogenase
[Posttranslational modification, protein turnover,
chaperones / Transcription].
Length = 202
Score = 27.2 bits (61), Expect = 7.2
Identities = 8/21 (38%), Positives = 13/21 (61%)
Query: 122 IIGAIGAGKTSLLHIILNELR 142
+ G G+GKT+L+ L L+
Sbjct: 18 VGGPPGSGKTALIEKTLRALK 38
>gnl|CDD|226124 COG3596, COG3596, Predicted GTPase [General function prediction
only].
Length = 296
Score = 27.4 bits (61), Expect = 7.6
Identities = 11/38 (28%), Positives = 18/38 (47%)
Query: 97 QWSLQNADLTLNAVSITFKPKQLACIIGAIGAGKTSLL 134
+ L + +T K ++GA GAGK+SL+
Sbjct: 19 SLLSERILEQLRMLQLTEKEPVNVLLMGATGAGKSSLI 56
>gnl|CDD|236707 PRK10522, PRK10522, multidrug transporter membrane
component/ATP-binding component; Provisional.
Length = 547
Score = 27.6 bits (62), Expect = 7.7
Identities = 41/161 (25%), Positives = 72/161 (44%), Gaps = 18/161 (11%)
Query: 89 VSLDNVTAQWSLQNADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKV 148
+ L NVT + Q+ ++ +++T K +L +IG G+GK++L ++ + SG++
Sbjct: 323 LELRNVTFAY--QDNGFSVGPINLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQPQSGEI 380
Query: 149 SLGG-TVSYASQEPW--IFAATIRQNILF-------GLPYLRRRYADVIRVCALQDDFDS 198
L G V+ E + +F+A LF G P + +
Sbjct: 381 LLDGKPVTAEQPEDYRKLFSAVFTDFHLFDQLLGPEGKPANPALVEKWLERLKMAHKL-E 439
Query: 199 LPNGDFTVVGERGASLSGGQKARINLARAVYKNADIYLLDD 239
L +G + + LS GQK R+ L A+ + DI LLD+
Sbjct: 440 LEDGRISNL-----KLSKGQKKRLALLLALAEERDILLLDE 475
>gnl|CDD|213240 cd03273, ABC_SMC2_euk, ATP-binding cassette domain of eukaryotic
SMC2 proteins. The structural maintenance of
chromosomes (SMC) proteins are large (approximately 110
to 170 kDa), and each is arranged into five recognizable
domains. Amino-acid sequence homology of SMC proteins
between species is largely confined to the amino- and
carboxy-terminal globular domains. The amino-terminal
domain contains a 'Walker A' nucleotide-binding domain
(GxxGxGKS/T, in the single-letter amino-acid code),
which by mutational studies has been shown to be
essential in several proteins. The carboxy-terminal
domain contains a sequence (the DA-box) that resembles a
'Walker B' motif, and a motif with homology to the
signature sequence of the ATP-binding cassette (ABC)
family of ATPases. The sequence homology within the
carboxy-terminal domain is relatively high within the
SMC1-SMC4 group, whereas SMC5 and SMC6 show some
divergence in both of these sequences. In eukaryotic
cells, the proteins are found as heterodimers of SMC1
paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6
(formerly known as Rad18).
Length = 251
Score = 27.3 bits (61), Expect = 7.8
Identities = 14/37 (37%), Positives = 25/37 (67%), Gaps = 4/37 (10%)
Query: 214 LSGGQKARINL----ARAVYKNADIYLLDDPLSAVDM 246
LSGGQ++ + L A ++K A +Y+LD+ +A+D+
Sbjct: 167 LSGGQRSLVALSLILALLLFKPAPMYILDEVDAALDL 203
>gnl|CDD|183183 PRK11537, PRK11537, putative GTP-binding protein YjiA; Provisional.
Length = 318
Score = 27.4 bits (61), Expect = 8.0
Identities = 13/26 (50%), Positives = 17/26 (65%)
Query: 115 KPKQLACIIGAIGAGKTSLLHIILNE 140
P + + G +GAGKT+LL ILNE
Sbjct: 2 NPIAVTLLTGFLGAGKTTLLRHILNE 27
>gnl|CDD|180809 PRK07049, PRK07049, methionine gamma-lyase; Validated.
Length = 427
Score = 27.3 bits (61), Expect = 8.4
Identities = 18/41 (43%), Positives = 19/41 (46%), Gaps = 9/41 (21%)
Query: 127 GAGKTSLLHI---------ILNELRISSGKVSLGGTVSYAS 158
GAG T I LN L+I VSLGGT S AS
Sbjct: 339 GAGSTFSFDIKGGQAAAFRFLNALQIFKLAVSLGGTESLAS 379
>gnl|CDD|224345 COG1428, COG1428, Deoxynucleoside kinases [Nucleotide transport and
metabolism].
Length = 216
Score = 27.3 bits (61), Expect = 8.4
Identities = 9/21 (42%), Positives = 12/21 (57%)
Query: 122 IIGAIGAGKTSLLHIILNELR 142
I G IGAGK++L + L
Sbjct: 9 IEGMIGAGKSTLAQALAEHLG 29
>gnl|CDD|233555 TIGR01740, pyrF, orotidine 5'-phosphate decarboxylase, subfamily 1.
This model represents orotidine 5'-monophosphate
decarboxylase, the PyrF protein of pyrimidine nucleotide
biosynthesis. In many eukaryotes, the region hit by this
model is part of a multifunctional protein [Purines,
pyrimidines, nucleosides, and nucleotides, Pyrimidine
ribonucleotide biosynthesis].
Length = 214
Score = 26.9 bits (60), Expect = 8.6
Identities = 16/53 (30%), Positives = 23/53 (43%), Gaps = 10/53 (18%)
Query: 201 NGDFTVV--GERGASL-SGGQKARINLARAVYKNAD-------IYLLDDPLSA 243
GDF ++ G R S + Q+ + L A AD IY +DP+ A
Sbjct: 157 TGDFLILTPGIRLDSKDADDQQRVVTLEDAKEAGADVIIVGRGIYAAEDPVEA 209
>gnl|CDD|232945 TIGR00376, TIGR00376, DNA helicase, putative. The gene product may
represent a DNA helicase. Eukaryotic members of this
family have been characterized as binding certain
single-stranded G-rich DNA sequences (GGGGT and GGGCT).
A number of related proteins are characterized as
helicases [DNA metabolism, DNA replication,
recombination, and repair].
Length = 637
Score = 27.5 bits (61), Expect = 8.9
Identities = 25/92 (27%), Positives = 33/92 (35%), Gaps = 22/92 (23%)
Query: 62 DRVLNFLLLGEHEPRKINSVHSNGKGHVSLDNVTAQWSLQNADLTLN-----AVSITFKP 116
R+L F+L G P K + +H Q D LN AV
Sbjct: 130 SRLLEFIL-GREAPSKASEIHD----------------FQFFDPNLNESQKEAVLFALSS 172
Query: 117 KQLACIIGAIGAGKTSLLHIILNELRISSGKV 148
K L I G G GKT L ++ +L +V
Sbjct: 173 KDLFLIHGPPGTGKTRTLVELIRQLVKRGLRV 204
>gnl|CDD|217465 pfam03266, NTPase_1, NTPase. This domain is found across all
species from bacteria to human, and the function was
determined first in a hyperthermophilic bacterium to be
an NTPase. The structure of one member-sequence
represents a variation of the RecA fold, and implies
that the function might be that of a DNA/RNA modifying
enzyme. The sequence carries both a Walker A and Walker
B motif which together are characteristic of ATPases or
GTPases. The protein exhibits an increased expression
profile in human liver cholangiocarcinoma when compared
to normal tissue.
Length = 168
Score = 26.8 bits (60), Expect = 8.9
Identities = 12/31 (38%), Positives = 18/31 (58%), Gaps = 2/31 (6%)
Query: 122 IIGAIGAGKTSLLHIILNELRISSGKVSLGG 152
I G G GKT+L+ ++ L+ S V +GG
Sbjct: 4 ITGPPGVGKTTLVKKVIELLK--SEGVKVGG 32
>gnl|CDD|217066 pfam02492, cobW, CobW/HypB/UreG, nucleotide-binding domain. This
domain is found in HypB, a hydrogenase expression /
formation protein, and UreG a urease accessory protein.
Both these proteins contain a P-loop nucleotide binding
motif. HypB has GTPase activity and is a guanine
nucleotide binding protein. It is not known whether UreG
binds GTP or some other nucleotide. Both enzymes are
involved in nickel binding. HypB can store nickel and is
required for nickel dependent hydrogenase expression.
UreG is required for functional incorporation of the
urease nickel metallocenter. GTP hydrolysis may required
by these proteins for nickel incorporation into other
nickel proteins. This family of domains also contains
P47K, a Pseudomonas chlororaphis protein needed for
nitrile hydratase expression, and the cobW gene product,
which may be involved in cobalamin biosynthesis in
Pseudomonas denitrificans.
Length = 178
Score = 26.8 bits (60), Expect = 9.9
Identities = 8/20 (40%), Positives = 14/20 (70%), Gaps = 1/20 (5%)
Query: 122 IIGAIGAGKTSLL-HIILNE 140
+ G +G+GKT+LL H++
Sbjct: 5 LTGFLGSGKTTLLEHLLEKN 24
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.324 0.139 0.414
Gapped
Lambda K H
0.267 0.0534 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 13,522,891
Number of extensions: 1289143
Number of successful extensions: 2185
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1906
Number of HSP's successfully gapped: 530
Length of query: 265
Length of database: 10,937,602
Length adjustment: 95
Effective length of query: 170
Effective length of database: 6,723,972
Effective search space: 1143075240
Effective search space used: 1143075240
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 58 (26.6 bits)