RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy1503
(265 letters)
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC
transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo
sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A
1ckz_A
Length = 229
Score = 295 bits (758), Expect = e-102
Identities = 77/179 (43%), Positives = 108/179 (60%), Gaps = 1/179 (0%)
Query: 83 SNGKGHVSLDNVTAQWSLQNADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELR 142
S V ++NVTA W + L ++ + QL + G+ GAGKTSLL +I+ EL
Sbjct: 1 SLTTTEVVMENVTAFWE-EGGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELE 59
Query: 143 ISSGKVSLGGTVSYASQEPWIFAATIRQNILFGLPYLRRRYADVIRVCALQDDFDSLPNG 202
S GK+ G +S+ SQ WI TI++NI+FG+ Y RY VI+ C L++D
Sbjct: 60 PSEGKIKHSGRISFCSQFSWIMPGTIKENIIFGVSYDEYRYRSVIKACQLEEDISKFAEK 119
Query: 203 DFTVVGERGASLSGGQKARINLARAVYKNADIYLLDDPLSAVDMHVGKHLFEDCISGCL 261
D V+GE G +LSGGQ+ARI+LARAVYK+AD+YLLD P +D+ K +FE C+ +
Sbjct: 120 DNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLM 178
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins,
MRP1/ABCC1, nucleotide-binding domain, ATP- binding,
hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Length = 237
Score = 287 bits (737), Expect = 9e-99
Identities = 80/172 (46%), Positives = 113/172 (65%), Gaps = 1/172 (0%)
Query: 87 GHVSLDNVTAQWSLQNADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSG 146
+++ N T W+ ++ TLN ++ + L ++G +G GK+SLL +L E+ G
Sbjct: 2 NSITVRNATFTWA-RSDPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEG 60
Query: 147 KVSLGGTVSYASQEPWIFAATIRQNILFGLPYLRRRYADVIRVCALQDDFDSLPNGDFTV 206
V++ G+V+Y Q+ WI ++R+NILFG Y VI+ CAL D + LP+GD T
Sbjct: 61 HVAIKGSVAYVPQQAWIQNDSLRENILFGCQLEEPYYRSVIQACALLPDLEILPSGDRTE 120
Query: 207 VGERGASLSGGQKARINLARAVYKNADIYLLDDPLSAVDMHVGKHLFEDCIS 258
+GE+G +LSGGQK R++LARAVY NADIYL DDPLSAVD HVGKH+FE+ I
Sbjct: 121 IGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFENVIG 172
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding
cassette, transport protein; HET: ATP; 2.05A {Homo
sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A*
1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A*
1xfa_A*
Length = 290
Score = 289 bits (741), Expect = 1e-98
Identities = 78/210 (37%), Positives = 113/210 (53%), Gaps = 12/210 (5%)
Query: 58 RLSTDRVLNFL------LLGEHEPRKINSVHSNGKGHVSLDNVTAQWSLQNADLTLNAVS 111
+ + V F L + + N SNG +S N + + L ++
Sbjct: 4 EVVMENVTAFWEEGFGELFEKAKQNNNNRKTSNGDDSLSFSNFSLLGTP-----VLKDIN 58
Query: 112 ITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSLGGTVSYASQEPWIFAATIRQN 171
+ QL + G+ GAGKTSLL +I+ EL S GK+ G +S+ SQ WI TI++N
Sbjct: 59 FKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGRISFCSQNSWIMPGTIKEN 118
Query: 172 ILFGLPYLRRRYADVIRVCALQDDFDSLPNGDFTVVGERGASLSGGQKARINLARAVYKN 231
I+ G+ Y RY VI+ C L++D D V+GE G +LSGGQ+ARI+LARAVYK+
Sbjct: 119 II-GVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKD 177
Query: 232 ADIYLLDDPLSAVDMHVGKHLFEDCISGCL 261
AD+YLLD P +D+ K +FE C+ +
Sbjct: 178 ADLYLLDSPFGYLDVLTEKEIFESCVCKLM 207
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP,
cyclic peptide, membrane protein; 3.80A {Mus musculus}
PDB: 3g61_A* 3g60_A*
Length = 1284
Score = 130 bits (328), Expect = 3e-34
Identities = 62/217 (28%), Positives = 101/217 (46%), Gaps = 28/217 (12%)
Query: 53 IFFGGRLSTDRVLNFLLLGEHEPRKINSVHSNG------KGHVSLDNVTAQWSLQNADLT 106
F R + V + +++P I+S +G +G++ N+ + +
Sbjct: 350 AFANARGAAYEVFKII---DNKP-SIDSFSKSGHKPDNIQGNLEFKNIHFSYPSRKEVQI 405
Query: 107 LNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSLGGT------------- 153
L +++ K Q ++G G GK++ + ++ G VS+ G
Sbjct: 406 LKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPLDGMVSIDGQDIRTINVRYLREI 465
Query: 154 VSYASQEPWIFAATIRQNILFGLPYLRRRYADVIRVC--ALQDDF-DSLPNGDFTVVGER 210
+ SQEP +FA TI +NI +G + ++ + A DF LP+ T+VGER
Sbjct: 466 IGVVSQEPVLFATTIAENIRYGREDVTM--DEIEKAVKEANAYDFIMKLPHQFDTLVGER 523
Query: 211 GASLSGGQKARINLARAVYKNADIYLLDDPLSAVDMH 247
GA LSGGQK RI +ARA+ +N I LLD+ SA+D
Sbjct: 524 GAQLSGGQKQRIAIARALVRNPKILLLDEATSALDTE 560
Score = 117 bits (295), Expect = 5e-30
Identities = 65/249 (26%), Positives = 109/249 (43%), Gaps = 40/249 (16%)
Query: 30 RGLYMTFNLFTTRMALFCTLTS----FIFFG----GRLSTDRVLNFLLLGEHEPRKINSV 81
+ L N+ A+ + F +S ++ + E P +I+S
Sbjct: 962 QQLMTFENVLLVFSAIVFGAMAVGQVSSFAPDYAKATVSASHIIRII---EKTP-EIDSY 1017
Query: 82 HSNG------KGHVSLDNVTAQWSLQNADLTLNAVSITFKPKQLACIIGAIGAGKTSLLH 135
+ G +G+V V + + + L +S+ K Q ++G+ G GK++++
Sbjct: 1018 STQGLKPNMLEGNVQFSGVVFNYPTRPSIPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQ 1077
Query: 136 IILNELR---ISSGKVSLGGT-------------VSYASQEPWIFAATIRQNILFGLPYL 179
++ R +G V L G + SQEP +F +I +NI +G
Sbjct: 1078 LLE---RFYDPMAGSVFLDGKEIKQLNVQWLRAQLGIVSQEPILFDCSIAENIAYGDNSR 1134
Query: 180 RRRYADVIRVC--ALQDDF-DSLPNGDFTVVGERGASLSGGQKARINLARAVYKNADIYL 236
Y +++R A F DSLP+ T VG++G LSGGQK RI +ARA+ + I L
Sbjct: 1135 VVSYEEIVRAAKEANIHQFIDSLPDKYNTRVGDKGTQLSGGQKQRIAIARALVRQPHILL 1194
Query: 237 LDDPLSAVD 245
LD+ SA+D
Sbjct: 1195 LDEATSALD 1203
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP;
2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Length = 271
Score = 116 bits (293), Expect = 1e-31
Identities = 51/176 (28%), Positives = 84/176 (47%), Gaps = 17/176 (9%)
Query: 86 KGHVSLDNVTAQWSLQNADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISS 145
KG V +V+ + L ++ T P ++ ++G G+GK+++ ++ N + +
Sbjct: 14 KGLVKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTG 73
Query: 146 GKVSLGGT-------------VSYASQEPWIFAATIRQNILFGLPYLRRRYADVIRVC-- 190
GKV L G V+ QEP +F + R+NI +GL ++ V
Sbjct: 74 GKVLLDGEPLVQYDHHYLHTQVAAVGQEPLLFGRSFRENIAYGLTRTPTM-EEITAVAME 132
Query: 191 ALQDDF-DSLPNGDFTVVGERGASLSGGQKARINLARAVYKNADIYLLDDPLSAVD 245
+ DF P G T VGE G LSGGQ+ + LARA+ + + +LD+ SA+D
Sbjct: 133 SGAHDFISGFPQGYDTEVGETGNQLSGGQRQAVALARALIRKPRLLILDNATSALD 188
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB;
ABC-transporter, transport protein; HET: ADP; 1.60A
{Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A*
2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Length = 247
Score = 113 bits (285), Expect = 1e-30
Identities = 48/176 (27%), Positives = 83/176 (47%), Gaps = 19/176 (10%)
Query: 86 KGHVSLDNVTAQWSLQNADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISS 145
++ N+ ++ ++ + L+ ++++ K ++ I+G G+GK++L +I +
Sbjct: 5 HHDITFRNIRFRYK-PDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPEN 63
Query: 146 GKVSLGGT-------------VSYASQEPWIFAATIRQNILFGLPYLRRRYADVIRVC-- 190
G+V + G V Q+ + +I NI P + VI
Sbjct: 64 GQVLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSV--EKVIYAAKL 121
Query: 191 ALQDDF-DSLPNGDFTVVGERGASLSGGQKARINLARAVYKNADIYLLDDPLSAVD 245
A DF L G T+VGE+GA LSGGQ+ RI +ARA+ N I + D+ SA+D
Sbjct: 122 AGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALD 177
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial;
membrane protein, mitochondrial transport; HET: ACP LMT
CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Length = 595
Score = 118 bits (297), Expect = 2e-30
Identities = 72/301 (23%), Positives = 120/301 (39%), Gaps = 75/301 (24%)
Query: 8 FTALVDQARKIEIGVVQKTSYLRGLYMTFNLFTTRMALFCTLTSFIFFGGRL------ST 61
+ + VD ++ K ++ R + + + S ++ GG L +
Sbjct: 227 YASKVDHVMQLAR----KEAFARAGFFGATGL----SGNLIVLSVLYKGGLLMGSAHMTV 278
Query: 62 DRVLNFLL--------LG-----------------------EHEPRKINSVHSNG----- 85
+ +FL+ +G E EP K+
Sbjct: 279 GELSSFLMYAFWVGISIGGLSSFYSELMKGLGAGGRLWELLEREP-KLPFNEGVILNEKS 337
Query: 86 -KGHVSLDNVTAQWSLQNADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELR-- 142
+G + NV + + S++ + ++G G+GK+++L ++L R
Sbjct: 338 FQGALEFKNVHFAYPARPEVPIFQDFSLSIPSGSVTALVGPSGSGKSTVLSLLL---RLY 394
Query: 143 -ISSGKVSLGGT-------------VSYASQEPWIFAATIRQNILFGLPYLRR-RYADVI 187
+SG +SL G + SQEP +F+ +I +NI +G ++
Sbjct: 395 DPASGTISLDGHDIRQLNPVWLRSKIGTVSQEPILFSCSIAENIAYGADDPSSVTAEEIQ 454
Query: 188 RVC--ALQDDF-DSLPNGDFTVVGERGASLSGGQKARINLARAVYKNADIYLLDDPLSAV 244
RV A F + P G TVVGE+G LSGGQK RI +ARA+ KN I LLD+ SA+
Sbjct: 455 RVAEVANAVAFIRNFPQGFNTVVGEKGVLLSGGQKQRIAIARALLKNPKILLLDEATSAL 514
Query: 245 D 245
D
Sbjct: 515 D 515
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease
protein; asymmetric dimer, tetramer, P-glycoprotein;
HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Length = 243
Score = 111 bits (280), Expect = 6e-30
Identities = 43/161 (26%), Positives = 79/161 (49%), Gaps = 29/161 (18%)
Query: 107 LNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELR---ISSGKVSLGGT---------- 153
L +S +P + G G GK+++ ++ R ++G++++ G
Sbjct: 18 LRDISFEAQPNSIIAFAGPSGGGKSTIFSLLE---RFYQPTAGEITIDGQPIDNISLENW 74
Query: 154 ---VSYASQEPWIFAATIRQNILFGLPYLRRRYA---DVIRVC--ALQDDF-DSLPNGDF 204
+ + SQ+ I A TIR+N+ +G D+ +V A F +++P+
Sbjct: 75 RSQIGFVSQDSAIMAGTIRENLTYG----LEGDYTDEDLWQVLDLAFARSFVENMPDQLN 130
Query: 205 TVVGERGASLSGGQKARINLARAVYKNADIYLLDDPLSAVD 245
T VGERG +SGGQ+ R+ +ARA +N I +LD+ +++D
Sbjct: 131 TEVGERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLD 171
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION
channel, transport protein, casse protein; 2.00A {Homo
sapiens} PDB: 2onj_A* 2hyd_A
Length = 578
Score = 116 bits (293), Expect = 6e-30
Identities = 58/208 (27%), Positives = 101/208 (48%), Gaps = 26/208 (12%)
Query: 60 STDRVLNFLLLGEHEPRKINSVH-SNGKGHVSLDNVTAQWSLQNADLTLNAVSITFKPKQ 118
S DRV + + + +G + +D+V+ Q++ N L ++++ + +
Sbjct: 310 SMDRVFQLIDEDYDIKNGVGAQPIEIKQGRIDIDHVSFQYN-DNEAPILKDINLSIEKGE 368
Query: 119 LACIIGAIGAGKTSLLHIILNELR---ISSGKVSLGGT----VSYAS---------QEPW 162
+G G GK++L+++I R ++SG++ + G S Q+
Sbjct: 369 TVAFVGMSGGGKSTLINLIP---RFYDVTSGQILIDGHNIKDFLTGSLRNQIGLVQQDNI 425
Query: 163 IFAATIRQNILFGLPYLRRRYADVIRVC--ALQDDF-DSLPNGDFTVVGERGASLSGGQK 219
+F+ T+++NIL G P +V+ A DF +LP G T VGERG LSGGQK
Sbjct: 426 LFSDTVKENILLGRPTATD--EEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQK 483
Query: 220 ARINLARAVYKNADIYLLDDPLSAVDMH 247
R+++AR N I +LD+ SA+D+
Sbjct: 484 QRLSIARIFLNNPPILILDEATSALDLE 511
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter,
transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Length = 587
Score = 116 bits (293), Expect = 7e-30
Identities = 54/181 (29%), Positives = 93/181 (51%), Gaps = 19/181 (10%)
Query: 83 SNGKGHVSLDNVTAQWSLQNADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELR 142
N +G VS +NV ++ +N D L+ V+ + KP L ++G G+GK++L+++I +
Sbjct: 336 PNVEGSVSFENVEFRYF-ENTDPVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLID 394
Query: 143 ISSGKVSLGGT-------------VSYASQEPWIFAATIRQNILFGLPYLRRRYADVIRV 189
G+V + +S QE +F+ TI++N+ +G +++
Sbjct: 395 PERGRVEVDELDVRTVKLKDLRGHISAVPQETVLFSGTIKENLKWGREDATD--DEIVEA 452
Query: 190 CAL-Q-DDF-DSLPNGDFTVVGERGASLSGGQKARINLARAVYKNADIYLLDDPLSAVDM 246
+ Q DF SLP G + V G + SGGQK R+++ARA+ K + +LDD S+VD
Sbjct: 453 AKIAQIHDFIISLPEGYDSRVERGGRNFSGGQKQRLSIARALVKKPKVLILDDCTSSVDP 512
Query: 247 H 247
Sbjct: 513 I 513
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter,
lipid flippase, hydrolase, inner membrane, lipid
transport, membrane; HET: ANP; 3.70A {Salmonella
typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A*
3b5z_A* 3b5w_A
Length = 582
Score = 116 bits (293), Expect = 7e-30
Identities = 50/207 (24%), Positives = 87/207 (42%), Gaps = 29/207 (14%)
Query: 60 STDRVLNFLLLGEHEPRKINSVH--SNGKGHVSLDNVTAQWSLQNADLTLNAVSITFKPK 117
+ + L + E K G + NVT + + L +++
Sbjct: 314 ACQTLFAIL---DSEQEKDEGKRVIDRATGDLEFRNVTFTYPGREVP-ALRNINLKIPAG 369
Query: 118 QLACIIGAIGAGKTSLLHIILNELR---ISSGKVSLGGT-------------VSYASQEP 161
+ ++G G+GK+++ +I R I G + + G V+ SQ
Sbjct: 370 KTVALVGRSGSGKSTIASLIT---RFYDIDEGHILMDGHDLREYTLASLRNQVALVSQNV 426
Query: 162 WIFAATIRQNILFGLPYLRRRYADVIRVC--ALQDDF-DSLPNGDFTVVGERGASLSGGQ 218
+F T+ NI + R + A DF + + NG T++GE G LSGGQ
Sbjct: 427 HLFNDTVANNIAYARTEEYSR-EQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQ 485
Query: 219 KARINLARAVYKNADIYLLDDPLSAVD 245
+ RI +ARA+ +++ I +LD+ SA+D
Sbjct: 486 RQRIAIARALLRDSPILILDEATSALD 512
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter,
lipid flippase, hydrolase, inner membrane, lipid
transport, membrane; 5.50A {Vibrio cholerae}
Length = 582
Score = 113 bits (286), Expect = 6e-29
Identities = 52/206 (25%), Positives = 92/206 (44%), Gaps = 27/206 (13%)
Query: 60 STDRVLNFLLLGEHEPRKINSVH-SNGKGHVSLDNVTAQWSLQNADLTLNAVSITFKPKQ 118
+ + F L+ R G V + +VT + + L+ VS + +
Sbjct: 314 ACQTL--FGLMDLETERDNGKYEAERVNGEVDVKDVTFTYQGKE-KPALSHVSFSIPQGK 370
Query: 119 LACIIGAIGAGKTSLLHIILNELR---ISSGKVSLGGT-------------VSYASQEPW 162
++G G+GK+++ ++ R + SG + L G + SQ
Sbjct: 371 TVALVGRSGSGKSTIANLFT---RFYDVDSGSICLDGHDVRDYKLTNLRRHFALVSQNVH 427
Query: 163 IFAATIRQNILFGLPYLRRRYADVIRVC--ALQDDF-DSLPNGDFTVVGERGASLSGGQK 219
+F TI NI + R + + A +F +++P G TV+GE G SLSGGQ+
Sbjct: 428 LFNDTIANNIAYAAEGEYTR-EQIEQAARQAHAMEFIENMPQGLDTVIGENGTSLSGGQR 486
Query: 220 ARINLARAVYKNADIYLLDDPLSAVD 245
R+ +ARA+ ++A + +LD+ SA+D
Sbjct: 487 QRVAIARALLRDAPVLILDEATSALD 512
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter,
ABCB6, nucleotide binding domain, heme BIOS transport
protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A*
3nhb_A*
Length = 306
Score = 109 bits (274), Expect = 1e-28
Identities = 60/178 (33%), Positives = 85/178 (47%), Gaps = 20/178 (11%)
Query: 86 KGHVSLDNVTAQWSLQNADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISS 145
KG + +NV +S + TL VS T P Q ++G GAGK+++L ++ ISS
Sbjct: 51 KGRIEFENVH--FSYADGRETLQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFYDISS 108
Query: 146 GKVSLGG----TVSYAS---------QEPWIFAATIRQNILFGLPYLRRRYADVIRVC-- 190
G + + G V+ AS Q+ +F TI NI +G +V
Sbjct: 109 GCIRIDGQDISQVTQASLRSHIGVVPQDTVLFNDTIADNIRYGRVTAGN--DEVEAAAQA 166
Query: 191 ALQDDF-DSLPNGDFTVVGERGASLSGGQKARINLARAVYKNADIYLLDDPLSAVDMH 247
A D + P G T VGERG LSGG+K R+ +AR + K I LLD+ SA+D
Sbjct: 167 AGIHDAIMAFPEGYRTQVGERGLKLSGGEKQRVAIARTILKAPGIILLDEATSALDTS 224
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural
genomics, structural genomics consortium, SGC; 2.20A
{Plasmodium yoelii yoelii str}
Length = 260
Score = 105 bits (265), Expect = 1e-27
Identities = 45/180 (25%), Positives = 83/180 (46%), Gaps = 23/180 (12%)
Query: 86 KGHVSLDNVTAQWSLQNADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRI-- 143
++ +V + Q TL +++ ++G G+GK+++ ++ R
Sbjct: 15 GVNIEFSDVNFSYPKQTNHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLY---RFYD 71
Query: 144 SSGKVSLGG----TVSYAS---------QEPWIFAATIRQNILFGLPYLRRRYADVIRVC 190
+ G + +GG + S Q+ +F TI+ NIL+G +VI+
Sbjct: 72 AEGDIKIGGKNVNKYNRNSIRSIIGIVPQDTILFNETIKYNILYGKLDATD--EEVIKAT 129
Query: 191 --ALQDDF-DSLPNGDFTVVGERGASLSGGQKARINLARAVYKNADIYLLDDPLSAVDMH 247
A DF ++LP T+VG +G LSGG++ RI +AR + K+ I + D+ S++D
Sbjct: 130 KSAQLYDFIEALPKKWDTIVGNKGMKLSGGERQRIAIARCLLKDPKIVIFDEATSSLDSK 189
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288;
multidrug transporter, transport protein; HET: ANP;
2.90A {Thermotoga maritima}
Length = 598
Score = 93.8 bits (234), Expect = 6e-22
Identities = 49/205 (23%), Positives = 90/205 (43%), Gaps = 26/205 (12%)
Query: 60 STDRVLNFLLLGEHEPRKINSVHSNGKGHVSLDNVTAQWSLQNADLTLNAVSITFKPKQL 119
S +R+ L L E + +G + NV +S L ++ KP Q
Sbjct: 326 SAERIFEILDLEEEKDDPDAVELREVRGEIEFKNVW--FSYDKKKPVLKDITFHIKPGQK 383
Query: 120 ACIIGAIGAGKTSLLHIILNELR---ISSGKVSLGG----TVSYAS---------QEPWI 163
++G G+GKT+++++++ R + G++ + G + +S Q+ +
Sbjct: 384 VALVGPTGSGKTTIVNLLM---RFYDVDRGQILVDGIDIRKIKRSSLRSSIGIVLQDTIL 440
Query: 164 FAATIRQNILFGLPYLRRRYADVIRVC--ALQDDF-DSLPNGDFTVVGERGASLSGGQKA 220
F+ T+++N+ +G P ++ D F LP G TV+ + G LS GQ+
Sbjct: 441 FSTTVKENLKYGNPGATD--EEIKEAAKLTHSDHFIKHLPEGYETVLTDNGEDLSQGQRQ 498
Query: 221 RINLARAVYKNADIYLLDDPLSAVD 245
+ + RA N I +LD+ S VD
Sbjct: 499 LLAITRAFLANPKILILDEATSNVD 523
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance
regulator, residues 1193-1427...; CFTR, ABC transporter,
nucleotide binding domain, NBD; HET: B44; 2.70A {Homo
sapiens}
Length = 390
Score = 91.7 bits (228), Expect = 1e-21
Identities = 42/180 (23%), Positives = 78/180 (43%), Gaps = 25/180 (13%)
Query: 86 KGHVSLDNVTAQWSLQNADLTLNAVSITFKPKQLACIIGAIGAGKTSLL----------- 134
G +++ ++TA+++ + + L +S + P Q ++G G+GK++LL
Sbjct: 17 GGQMTVKDLTAKYT-EGGNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLNTEG 75
Query: 135 HIILNELRISS-GKVSLGGTVSYASQEPWIFAATIRQNI-LFGLPYLRRRYAD-----VI 187
I ++ + S Q+ +IF+ T R+N+ ++D V
Sbjct: 76 EIQIDGVSWDSITLEQWRKAFGVIPQKVFIFSGTFRKNLDPNA------AHSDQEIWKVA 129
Query: 188 RVCALQDDFDSLPNGDFTVVGERGASLSGGQKARINLARAVYKNADIYLLDDPLSAVDMH 247
L+ + P V+ + G LS G K + LAR+V A I LLD+P + +D
Sbjct: 130 DEVGLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPV 189
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural
genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Length = 263
Score = 85.5 bits (212), Expect = 5e-20
Identities = 34/181 (18%), Positives = 66/181 (36%), Gaps = 28/181 (15%)
Query: 89 VSLDNVTAQWSLQNADLT-LNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGK 147
+ L NV S + + L +++ + I+G G+GKT+LL I + L SG
Sbjct: 2 IQLKNVGITLSGKGYERFSLENINLEVN-GEKVIILGPNGSGKTTLLRAI-SGLLPYSGN 59
Query: 148 VSLGGT--------VSYASQEP--WIFAATIRQNILFGLPYL---RRRYADVIRVCALQD 194
+ + G + Y++ P + T+ + R + ++++ L +
Sbjct: 60 IFINGMEVRKIRNYIRYSTNLPEAYEIGVTVNDIVYLYEELKGLDRDLFLEMLKALKLGE 119
Query: 195 DF-DSLPNGDFTVVGERGASLSGGQKARINLARAVYKNADIYLLDDPLSAVDMHVGKHLF 253
+ LS GQ + + A+ +I LD+P VD +
Sbjct: 120 EILRRKLY-----------KLSAGQSVLVRTSLALASQPEIVGLDEPFENVDAARRHVIS 168
Query: 254 E 254
Sbjct: 169 R 169
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET:
ATP; NMR {Saccharomyces cerevisiae}
Length = 608
Score = 86.2 bits (214), Expect = 2e-19
Identities = 37/154 (24%), Positives = 61/154 (39%), Gaps = 25/154 (16%)
Query: 104 DLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSLGGTVSYASQEPW- 162
D LN F ++ ++G G GKT+L+ ++ L+ G+ VS Q+
Sbjct: 365 DFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKPDEGQDIPKLNVSMKPQKIAP 424
Query: 163 --------IFAATIRQNILFGLPYLRRRYADVIRVCALQDDFDSLPNGDFTVVGERGASL 214
+F IR L + DV++ + D D L
Sbjct: 425 KFPGTVRQLFFKKIRGQFLN-----PQFQTDVVKPLRIDDIIDQEVQ-----------HL 468
Query: 215 SGGQKARINLARAVYKNADIYLLDDPLSAVDMHV 248
SGG+ R+ + A+ ADIYL+D+P + +D
Sbjct: 469 SGGELQRVAIVLALGIPADIYLIDEPSAYLDSEQ 502
Score = 54.6 bits (132), Expect = 8e-09
Identities = 26/178 (14%), Positives = 56/178 (31%), Gaps = 44/178 (24%)
Query: 110 VSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSLGGTVS-------------- 155
T +P Q+ ++G G GK++ L I+ + + + G+
Sbjct: 96 RLPTPRPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRFDDPPEWQEIIKYFRGSELQNY 155
Query: 156 ----------------YASQEPWIFA---ATIRQNILFGLPYLRRRYADVIRVCALQDDF 196
Y P + + + + I++ L++
Sbjct: 156 FTKMLEDDIKAIIKPQYVDNIPRAIKGPVQKVGELLKLRMEKSPEDVKRYIKILQLENVL 215
Query: 197 DSLPNGDFTVVGERGASLSGGQKARINLARAVYKNADIYLLDDPLSAVDMHVGKHLFE 254
LSGG+ R + + + AD+Y+ D+P S +D+ + +
Sbjct: 216 KRDIE-----------KLSGGELQRFAIGMSCVQEADVYMFDEPSSYLDVKQRLNAAQ 262
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur
cluster, adenosine diphosphate, nucleotide-binding; HET:
ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Length = 607
Score = 84.3 bits (209), Expect = 1e-18
Identities = 33/148 (22%), Positives = 66/148 (44%), Gaps = 19/148 (12%)
Query: 107 LNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSLGGTVSYASQEPWI--- 163
L + ++ I+G G GKT+ + ++ + GKV TV+Y + +I
Sbjct: 372 LEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWDLTVAY--KPQYIKAE 429
Query: 164 FAATIRQNIL-FGLPYLRRRY--ADVIRVCALQDDFDSLPNGDFTVVGERGASLSGGQKA 220
+ T+ + + L + ++++ + D +D LSGG+
Sbjct: 430 YEGTVYELLSKIDSSKLNSNFYKTELLKPLGIIDLYDRNVE-----------DLSGGELQ 478
Query: 221 RINLARAVYKNADIYLLDDPLSAVDMHV 248
R+ +A + ++ADIYLLD+P + +D+
Sbjct: 479 RVAIAATLLRDADIYLLDEPSAYLDVEQ 506
Score = 54.2 bits (131), Expect = 1e-08
Identities = 29/169 (17%), Positives = 57/169 (33%), Gaps = 45/169 (26%)
Query: 110 VSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSLGGTVS-------------- 155
K + I+G G GKT+ + I+ +L + + +
Sbjct: 110 RLPIVKDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDNVIRAFRGNELQNYFE 169
Query: 156 --------------YASQEPWIFAATIRQNILFGLPYL--RRRYADVIRVCALQDDFDSL 199
Y P +R+ L + ++ +V++ L++ D
Sbjct: 170 RLKNGEIRPVVKPQYVDLLPKAVKGKVRE----LLKKVDEVGKFEEVVKELELENVLDRE 225
Query: 200 PNGDFTVVGERGASLSGGQKARINLARAVYKNADIYLLDDPLSAVDMHV 248
+ LSGG+ R+ +A A+ + A Y D+P S +D+
Sbjct: 226 LH-----------QLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQ 263
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative
iron chelatin ABC transporter, nucleotide binding
domain; 2.40A {Haemophilus influenzae}
Length = 253
Score = 80.7 bits (200), Expect = 2e-18
Identities = 38/149 (25%), Positives = 67/149 (44%), Gaps = 15/149 (10%)
Query: 107 LNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSLGGTVSYASQEP-WIFA 165
++ + ++G G GK++LL ++L R GK+ + ++ + Q FA
Sbjct: 21 FQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKIEVYQSIGFVPQFFSSPFA 80
Query: 166 ATIRQNILFG-LPYLRR----RYADVIRVC-ALQD-DFDSLPNGDFTVVGERGASLSGGQ 218
++ +L G ++ + D AL + L +FT SLSGGQ
Sbjct: 81 YSVLDIVLMGRSTHINTFAKPKSHDYQVAMQALDYLNLTHLAKREFT-------SLSGGQ 133
Query: 219 KARINLARAVYKNADIYLLDDPLSAVDMH 247
+ I +ARA+ + LLD+P SA+D+
Sbjct: 134 RQLILIARAIASECKLILLDEPTSALDLA 162
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis,
hydrolyase/translation complex; HET: ADP; 1.90A
{Pyrococcus furiosus}
Length = 538
Score = 80.4 bits (199), Expect = 2e-17
Identities = 34/151 (22%), Positives = 67/151 (44%), Gaps = 19/151 (12%)
Query: 104 DLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSLGGTVSYASQEPWI 163
L K ++ I+G G GKT+ + ++ + GK+ TV+Y + +I
Sbjct: 299 SFRLEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKIEWDLTVAY--KPQYI 356
Query: 164 ---FAATIRQNIL-FGLPYLRRRY--ADVIRVCALQDDFDSLPNGDFTVVGERGASLSGG 217
+ T+ + + L + ++++ + D +D N LSGG
Sbjct: 357 KADYEGTVYELLSKIDASKLNSNFYKTELLKPLGIIDLYDREVN-----------ELSGG 405
Query: 218 QKARINLARAVYKNADIYLLDDPLSAVDMHV 248
+ R+ +A + ++ADIYLLD+P + +D+
Sbjct: 406 ELQRVAIAATLLRDADIYLLDEPSAYLDVEQ 436
Score = 54.2 bits (131), Expect = 1e-08
Identities = 28/167 (16%), Positives = 57/167 (34%), Gaps = 41/167 (24%)
Query: 110 VSITFKPKQLACIIGAIGAGKTSLLHIILNEL------RISSGKVSL------------- 150
K + I+G G GK++ + I+ +L S +
Sbjct: 40 RLPVVKEGMVVGIVGPNGTGKSTAVKILAGQLIPNLCGDNDSWDGVIRAFRGNELQNYFE 99
Query: 151 ---GGTVSYASQEPWIFAATI----RQNILFGLPY--LRRRYADVIRVCALQDDFDSLPN 201
G + + + I + ++ L + +V++ L++ +
Sbjct: 100 KLKNGEIRPVVKPQ--YVDLIPKAVKGKVIELLKKADETGKLEEVVKALELENVLEREIQ 157
Query: 202 GDFTVVGERGASLSGGQKARINLARAVYKNADIYLLDDPLSAVDMHV 248
LSGG+ R+ +A A+ +NA Y D+P S +D+
Sbjct: 158 -----------HLSGGELQRVAIAAALLRNATFYFFDEPSSYLDIRQ 193
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase,
translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Length = 538
Score = 77.8 bits (192), Expect = 1e-16
Identities = 37/151 (24%), Positives = 64/151 (42%), Gaps = 17/151 (11%)
Query: 104 DLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSLGGT-VSYASQEPW 162
D L + K ++ I+G G GKT+ I++ E+ G V+ +SY Q +
Sbjct: 281 DFQLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEITADEGSVTPEKQILSYKPQRIF 340
Query: 163 I-FAATIRQN----ILFGLPYLRRRYADVIRVCALQDDFDSLPNGDFTVVGERGASLSGG 217
+ T++Q L + +V + L +S N LSGG
Sbjct: 341 PNYDGTVQQYLENASKDALSTSSWFFEEVTKRLNLHRLLESNVN-----------DLSGG 389
Query: 218 QKARINLARAVYKNADIYLLDDPLSAVDMHV 248
+ ++ +A + K AD+Y+LD P S +D+
Sbjct: 390 ELQKLYIAATLAKEADLYVLDQPSSYLDVEE 420
Score = 53.1 bits (128), Expect = 3e-08
Identities = 32/164 (19%), Positives = 60/164 (36%), Gaps = 39/164 (23%)
Query: 113 TFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSL------------GGTVSYASQE 160
T K + ++G G GKT++L I+ E+ + G + G + +E
Sbjct: 21 TPKNNTILGVLGKNGVGKTTVLKILAGEIIPNFGDPNSKVGKDEVLKRFRGKEIYNYFKE 80
Query: 161 PW---------IFAATIRQNILFGL-------PYLRRRYADVIRVCALQDDFDSLPNGDF 204
+ I L G R + +V + + + ++ N
Sbjct: 81 LYSNELKIVHKIQYVEYASKFLKGTVNEILTKIDERGKKDEVKELLNMTNLWNKDAN--- 137
Query: 205 TVVGERGASLSGGQKARINLARAVYKNADIYLLDDPLSAVDMHV 248
LSGG R+ +A ++ + AD+Y+ D P S +D+
Sbjct: 138 --------ILSGGGLQRLLVAASLLREADVYIFDQPSSYLDVRE 173
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette,
hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Length = 279
Score = 73.4 bits (181), Expect = 2e-15
Identities = 36/183 (19%), Positives = 62/183 (33%), Gaps = 35/183 (19%)
Query: 89 VSLDNVTAQWSLQNADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKV 148
+ LD + + L +S + G GAGKT+LL+I+ +SG V
Sbjct: 22 IQLDQIGRMKQGKTI---LKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATSGTV 78
Query: 149 SLGGT------------------VSYASQEPWIFAATIRQNILFGL-----PYLRRRYAD 185
+L G VS++ E + + ++ G Y
Sbjct: 79 NLFGKMPGKVGYSAETVRQHIGFVSHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEI 138
Query: 186 VIRVCALQDDFD--SLPNGDFTVVGERGASLSGGQKARINLARAVYKNADIYLLDDPLSA 243
L + LS G+K R+ +ARA+ + +LD+P +
Sbjct: 139 RNEAHQLLKLVGMSAKAQQYIG-------YLSTGEKQRVMIARALMGQPQVLILDEPAAG 191
Query: 244 VDM 246
+D
Sbjct: 192 LDF 194
>1sgw_A Putative ABC transporter; structural genomics, P protein structure
initiative, southeast collaboratory for S genomics,
secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Length = 214
Score = 69.1 bits (170), Expect = 2e-14
Identities = 34/153 (22%), Positives = 60/153 (39%), Gaps = 26/153 (16%)
Query: 107 LNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSLGG--------TVSYAS 158
L +++T + + G G GKT+LL I L+ G++ G + +
Sbjct: 25 LERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPITKVKGKIFFLP 84
Query: 159 QEPWIFAA-TIRQNILF-----GLPYLRRRYADVIRVCALQDDFDSLPNGDFTVVGERGA 212
+E + ++ + G+ + D + + D L
Sbjct: 85 EEIIVPRKISVEDYLKAVASLYGVKVNKNEIMDALESVEVLDLKKKLGE----------- 133
Query: 213 SLSGGQKARINLARAVYKNADIYLLDDPLSAVD 245
LS G R+ LA + NA+IY+LDDP+ A+D
Sbjct: 134 -LSQGTIRRVQLASTLLVNAEIYVLDDPVVAID 165
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta
motif, beta sandwich, ligand binding protein; 1.90A
{Alicyclobacillus acidocaldarius}
Length = 355
Score = 70.3 bits (173), Expect = 4e-14
Identities = 47/201 (23%), Positives = 83/201 (41%), Gaps = 42/201 (20%)
Query: 76 RKINSVHSNGKGHVSLDNVTAQWSLQNADLTLNAVSITFKPKQLACIIGAIGAGKTSLLH 135
R + H +G + V + ++ VS + ++ ++G G+GKT++L
Sbjct: 2 RGHHHHHHHGSMTIEFVGVEKIYP--GGARSVRGVSFQIREGEMVGLLGPSGSGKTTILR 59
Query: 136 IILNELRISSGKVSLGG--------------TV--SYASQEPWIFA-ATIRQNILFGL-- 176
+I R + G V +GG V +YA +F T+ N+ FGL
Sbjct: 60 LIAGLERPTKGDVWIGGKRVTDLPPQKRNVGLVFQNYA-----LFQHMTVYDNVSFGLRE 114
Query: 177 -----PYLRRRYADVIRVCALQDDFDSLPNGDFTVVGERGASLSGGQKARINLARAVYKN 231
+ R +++R L+ + P LSGGQ+ R+ LARA+
Sbjct: 115 KRVPKDEMDARVRELLRFMRLESYANRFP-----------HELSGGQQQRVALARALAPR 163
Query: 232 ADIYLLDDPLSAVDMHVGKHL 252
+ L D+P +A+D + + L
Sbjct: 164 PQVLLFDEPFAAIDTQIRREL 184
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane
protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Length = 240
Score = 65.6 bits (161), Expect = 6e-13
Identities = 41/175 (23%), Positives = 66/175 (37%), Gaps = 44/175 (25%)
Query: 93 NVTAQWSLQNADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSLGG 152
+ ++ + ++G GAGK+ L +I ++ G+V L G
Sbjct: 6 RAEKRLGNFRLNVDFEM------GRDYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNG 59
Query: 153 --------------TV--SYASQEPWIFA-ATIRQNILFGL-----PYLRRRYADVIRVC 190
V YA +F ++ +NI +GL RR ++
Sbjct: 60 ADITPLPPERRGIGFVPQDYA-----LFPHLSVYRNIAYGLRNVERVERDRRVREMAEKL 114
Query: 191 ALQDDFDSLPNGDFTVVGERGASLSGGQKARINLARAVYKNADIYLLDDPLSAVD 245
+ D P LSGG++ R+ LARA+ + LLD+PLSAVD
Sbjct: 115 GIAHLLDRKPA-----------RLSGGERQRVALARALVIQPRLLLLDEPLSAVD 158
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane,
membrane, transmembrane, transport, ATP- binding,
hydrolase, nucleotide-binding, periplasm; HET: 1PE;
2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Length = 249
Score = 63.0 bits (154), Expect = 5e-12
Identities = 33/164 (20%), Positives = 57/164 (34%), Gaps = 35/164 (21%)
Query: 107 LNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSLGGT------------- 153
L +S + ++ ++G GAGK++LL + G + G
Sbjct: 16 LGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTS-GKGSIQFAGQPLEAWSATKLALH 74
Query: 154 VSYASQEPWI-FAATIRQNILFG-LPYLRRRYAD-VIRVCALQDDFDSLPNGDFTVVGER 210
+Y SQ+ FA + + R + V AL D
Sbjct: 75 RAYLSQQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGALALDD----KLGRSTN----- 125
Query: 211 GASLSGGQKARINLARA-------VYKNADIYLLDDPLSAVDMH 247
LSGG+ R+ LA + LLD+P++++D+
Sbjct: 126 --QLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVA 167
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding
domain, ABC motor domain, ferric iron transport, cell
inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Length = 359
Score = 63.4 bits (155), Expect = 7e-12
Identities = 45/189 (23%), Positives = 79/189 (41%), Gaps = 47/189 (24%)
Query: 88 HVSLDNVTAQWSLQNADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGK 147
+ + +++ + LN +S++ P ++ IIGA G GKT+LL + + SG+
Sbjct: 4 ALHIGHLSKSFQNTPV---LNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGE 60
Query: 148 VSLGGTV--------------------SYASQEPWIFA-ATIRQNILFGLPY-------L 179
+SL G +F T+ +NI +GL
Sbjct: 61 ISLSGKTIFSKNTNLPVRERRLGYLVQEGV-----LFPHLTVYRNIAYGLGNGKGRTAQE 115
Query: 180 RRRYADVIRVCALQDDFDSLPNGDFTVVGERGASLSGGQKARINLARAVYKNADIYLLDD 239
R+R ++ + + + P LSGGQ+ R LARA+ + ++ LLD+
Sbjct: 116 RQRIEAMLELTGISELAGRYP-----------HELSGGQQQRAALARALAPDPELILLDE 164
Query: 240 PLSAVDMHV 248
P SA+D +
Sbjct: 165 PFSALDEQL 173
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase,
ATP-binding cassette, ATPase, transport protein; 1.45A
{Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB:
1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Length = 353
Score = 61.9 bits (151), Expect = 2e-11
Identities = 44/183 (24%), Positives = 78/183 (42%), Gaps = 40/183 (21%)
Query: 89 VSLDNVTAQWSLQNADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHII--LNELRISSG 146
+ + NV+ + + + L+ V+I + + I+G GAGKT+ + II L+ S+G
Sbjct: 4 IIVKNVSKVFK-KGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDV--PSTG 60
Query: 147 KVSLGGTV----SYASQEPW------IFAA-------TIRQNILFGL-------PYLRRR 182
++ + P +F T +NI F L +R+R
Sbjct: 61 ELYFDDRLVASNGKLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKR 120
Query: 183 YADVIRVCALQDDFDSLPNGDFTVVGERGASLSGGQKARINLARAVYKNADIYLLDDPLS 242
+V ++ + + P LSG Q+ R+ LARA+ K+ + LLD+P S
Sbjct: 121 VEEVAKILDIHHVLNHFP-----------RELSGAQQQRVALARALVKDPSLLLLDEPFS 169
Query: 243 AVD 245
+D
Sbjct: 170 NLD 172
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I
ABC type importer, methionine uptake transporter,
membrane protein; HET: ADP; 2.90A {Escherichia coli}
PDB: 3tuj_C 3tuz_C* 3dhw_C
Length = 366
Score = 61.6 bits (150), Expect = 3e-11
Identities = 52/192 (27%), Positives = 86/192 (44%), Gaps = 38/192 (19%)
Query: 80 SVHSNGKGHVSLDNVTAQWSLQNADLT-LNAVSITFKPKQLACIIGAIGAGKTSLLHIIL 138
+ + K + L N+T + + LN VS+ Q+ +IGA GAGK++L+ +
Sbjct: 16 HIDDDDKHMIKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCV- 74
Query: 139 NEL-RISSGKVSLGGT-VSYASQEPW---------IF-------AATIRQNILFGL---- 176
N L R + G V + G ++ S+ IF + T+ N+ L
Sbjct: 75 NLLERPTEGSVLVDGQELTTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDN 134
Query: 177 ---PYLRRRYADVIRVCALQDDFDSLPNGDFTVVGERGASLSGGQKARINLARAVYKNAD 233
++RR +++ + L D DS P ++LSGGQK R+ +ARA+ N
Sbjct: 135 TPKDEVKRRVTELLSLVGLGDKHDSYP-----------SNLSGGQKQRVAIARALASNPK 183
Query: 234 IYLLDDPLSAVD 245
+ L D SA+D
Sbjct: 184 VLLCDQATSALD 195
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein;
ATP-binding, nucleotide-binding, membrane,
transmembrane, transport protein; 3.00A {Methanosarcina
acetivorans} SCOP: b.40.6.3 c.37.1.12
Length = 348
Score = 61.0 bits (149), Expect = 5e-11
Identities = 46/178 (25%), Positives = 83/178 (46%), Gaps = 41/178 (23%)
Query: 89 VSLDNVTAQWSLQNADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKV 148
+ +++++ +W + +L+ +S+ + + I+G GAGKT L +I SG++
Sbjct: 2 IEIESLSRKW----KNFSLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRI 57
Query: 149 SLGG--------------TV--SYASQEPWIFA-ATIRQNILFGLPYLR----RRYADVI 187
L G V +Y+ +F +++N+ FG+ + +R D
Sbjct: 58 LLDGKDVTDLSPEKHDIAFVYQNYS-----LFPHMNVKKNLEFGMRMKKIKDPKRVLDTA 112
Query: 188 RVCALQDDFDSLPNGDFTVVGERGASLSGGQKARINLARAVYKNADIYLLDDPLSAVD 245
R ++ D P +LSGG++ R+ LARA+ N I LLD+PLSA+D
Sbjct: 113 RDLKIEHLLDRNP-----------LTLSGGEQQRVALARALVTNPKILLLDEPLSALD 159
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein
biosynthesis, nucleotide-binding, phosphorylation, RNA-
binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces
cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Length = 986
Score = 60.8 bits (147), Expect = 9e-11
Identities = 31/133 (23%), Positives = 51/133 (38%), Gaps = 13/133 (9%)
Query: 110 VSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSLGGTVSYASQEPWIFAA--T 167
+ K + I G G GK++L+ I N Y + + +
Sbjct: 454 TQLRLKRARRYGICGPNGCGKSTLMRAIANGQVDGFPTQE-ECRTVYVEHDIDGTHSDTS 512
Query: 168 IRQNILFGLPYLRRRYADVIRVCALQDDFDSLPNGDFTVVGERGASLSGGQKARINLARA 227
+ + + D + D+ ++P +LSGG K ++ LARA
Sbjct: 513 VLDFVFESGVGTKEAIKDKLIEFGFTDEMIAMPIS----------ALSGGWKMKLALARA 562
Query: 228 VYKNADIYLLDDP 240
V +NADI LLD+P
Sbjct: 563 VLRNADILLLDEP 575
Score = 45.4 bits (107), Expect = 1e-05
Identities = 11/29 (37%), Positives = 18/29 (62%)
Query: 212 ASLSGGQKARINLARAVYKNADIYLLDDP 240
LSGGQK ++ LA ++ + +LD+P
Sbjct: 900 RGLSGGQKVKLVLAAGTWQRPHLIVLDEP 928
Score = 45.0 bits (106), Expect = 1e-05
Identities = 21/90 (23%), Positives = 39/90 (43%), Gaps = 3/90 (3%)
Query: 73 HEPRKINSVHSNGKGHVSLDNVTAQWSLQNADLTLNAVSITFKPKQLACIIGAIGAGKTS 132
EP + V + K V + N+ Q+ + + ++ +IG GAGK++
Sbjct: 656 PEPGYLEGVKTKQKAIVKVTNMEFQYPGTSKPQ-ITDINFQCSLSSRIAVIGPNGAGKST 714
Query: 133 LLHIILNELRISSGKVSLGGTVS--YASQE 160
L++++ EL +SG+V Y Q
Sbjct: 715 LINVLTGELLPTSGEVYTHENCRIAYIKQH 744
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint
center for structural genomics, JCSG, protein structu
initiative, PSI; 2.10A {Thermotoga maritima} SCOP:
c.37.1.12
Length = 256
Score = 58.3 bits (142), Expect = 2e-10
Identities = 33/159 (20%), Positives = 61/159 (38%), Gaps = 31/159 (19%)
Query: 107 LNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSLGG------------TV 154
L +S + ++ +IG GAGKT+ L II ++ SSG V++ G +
Sbjct: 31 LKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVEEPHEVRKLI 90
Query: 155 SYASQEPWIFAA-TIRQNILF-----GLPY--LRRRYADVIRVCALQDDFDSLPNGDFTV 206
SY +E + + + F + + L + +
Sbjct: 91 SYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERATEIAGLGEKIKDRVS----- 145
Query: 207 VGERGASLSGGQKARINLARAVYKNADIYLLDDPLSAVD 245
+ S G ++ +ARA+ N + +LD+P S +D
Sbjct: 146 ------TYSKGMVRKLLIARALMVNPRLAILDEPTSGLD 178
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell
membrane, cobalt transport, hydrolase, ION transport;
2.30A {Clostridium perfringens atcc 13124}
Length = 275
Score = 56.0 bits (136), Expect = 2e-09
Identities = 34/163 (20%), Positives = 70/163 (42%), Gaps = 35/163 (21%)
Query: 107 LNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSLGGT-VSYASQEPW--- 162
L +++ K ++ I+G G GK++L L+ SSG++ + Y+ +
Sbjct: 24 LKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRILFDNKPIDYSRKGIMKLR 83
Query: 163 -------------IFAATIRQNILFG-----LPY--LRRRYADVIRVCALQDDFDSLPNG 202
+F+A++ Q++ FG LP +R+R + ++ ++ D +
Sbjct: 84 ESIGIVFQDPDNQLFSASVYQDVSFGAVNMKLPEDEIRKRVDNALKRTGIEHLKDKPTH- 142
Query: 203 DFTVVGERGASLSGGQKARINLARAVYKNADIYLLDDPLSAVD 245
LS GQK R+ +A + + +LD+P + +D
Sbjct: 143 ----------CLSFGQKKRVAIAGVLVMEPKVLILDEPTAGLD 175
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding
protein; structural genomics, NPPSFA; 1.94A {Pyrococcus
horikoshii}
Length = 362
Score = 55.7 bits (135), Expect = 3e-09
Identities = 41/187 (21%), Positives = 80/187 (42%), Gaps = 55/187 (29%)
Query: 89 VSLDNVTAQWSLQNADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHII--LNELRISSG 146
+ L+N+ ++ A LN +++ K + ++G G+GK++LL+ I + + +SG
Sbjct: 4 IKLENIVKKFGNFTA---LNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYK--PTSG 58
Query: 147 KVSLGGTV----------------SYA-----SQEPWIFAATIRQNILFGL-------PY 178
K+ ++A T+ +NI F L
Sbjct: 59 KIYFDEKDVTELPPKDRNVGLVFQNWALYPHM---------TVYKNIAFPLELRKAPREE 109
Query: 179 LRRRYADVIRVCALQDDFDSLPNGDFTVVGERGASLSGGQKARINLARAVYKNADIYLLD 238
+ ++ +V ++ + + P LSGGQ+ R+ +ARA+ K ++ LLD
Sbjct: 110 IDKKVREVAKMLHIDKLLNRYP-----------WQLSGGQQQRVAIARALVKEPEVLLLD 158
Query: 239 DPLSAVD 245
+PLS +D
Sbjct: 159 EPLSNLD 165
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha
and beta proteins (A/B) TM0421, structural genomics,
NPPSFA; 2.11A {Thermotoga maritima}
Length = 359
Score = 54.1 bits (131), Expect = 1e-08
Identities = 40/187 (21%), Positives = 73/187 (39%), Gaps = 55/187 (29%)
Query: 89 VSLDNVTAQWSLQNADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHII--LNELRISSG 146
+ + N+ + ++ VS K + ++G G GKT+ L ++ + + +SG
Sbjct: 4 IRVVNLKKYF---GKVKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYK--PTSG 58
Query: 147 KVSLGGTV----------------SYA-----SQEPWIFAATIRQNILFGL-------PY 178
++ + +YA T+ +NI F L
Sbjct: 59 EIYFDDVLVNDIPPKYREVGMVFQNYALYPHM---------TVFENIAFPLRARRISKDE 109
Query: 179 LRRRYADVIRVCALQDDFDSLPNGDFTVVGERGASLSGGQKARINLARAVYKNADIYLLD 238
+ +R ++ R + + D P LSGGQ+ R+ LARA+ K + L D
Sbjct: 110 VEKRVVEIARKLLIDNLLDRKP-----------TQLSGGQQQRVALARALVKQPKVLLFD 158
Query: 239 DPLSAVD 245
+PLS +D
Sbjct: 159 EPLSNLD 165
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active
transport, sugar uptake and regulation, transport
protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3
b.40.6.3 c.37.1.12 PDB: 1vci_A*
Length = 372
Score = 53.4 bits (129), Expect = 2e-08
Identities = 46/187 (24%), Positives = 79/187 (42%), Gaps = 55/187 (29%)
Query: 89 VSLDNVTAQWSLQNADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHII--LNELRISSG 146
V L+N+T ++ A +N +++T K + ++G G GKT+ L +I L E + G
Sbjct: 12 VKLENLTKRFGNFTA---VNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEE--PTEG 66
Query: 147 KVSLGGTV----------------SYA-----SQEPWIFAATIRQNILFGL-------PY 178
++ G SYA T+ +NI F L
Sbjct: 67 RIYFGDRDVTYLPPKDRNISMVFQSYAVWPHM---------TVYENIAFPLKIKKFPKDE 117
Query: 179 LRRRYADVIRVCALQDDFDSLPNGDFTVVGERGASLSGGQKARINLARAVYKNADIYLLD 238
+ +R + +++ + P A LSGGQ+ R+ +ARA+ D+ L+D
Sbjct: 118 IDKRVRWAAELLQIEELLNRYP-----------AQLSGGQRQRVAVARAIVVEPDVLLMD 166
Query: 239 DPLSAVD 245
+PLS +D
Sbjct: 167 EPLSNLD 173
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport,
maltose uptake and regulation, sugar binding protein;
1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3
c.37.1.12 PDB: 2d62_A
Length = 372
Score = 53.0 bits (128), Expect = 2e-08
Identities = 42/184 (22%), Positives = 74/184 (40%), Gaps = 43/184 (23%)
Query: 89 VSLDNVTAQWSLQNADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHII--LNELRISSG 146
V L +V + A + +S+ K + ++G G GKT+ L +I L E S G
Sbjct: 4 VRLVDVWKVFGEVTA---VREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEE--PSRG 58
Query: 147 KVSLGGTVSYASQEPWIFAA------------------TIRQNILFGL-------PYLRR 181
++ +G + ++ T+ NI F L + +
Sbjct: 59 QIYIGDKLVADPEKGIFVPPKDRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQ 118
Query: 182 RYADVIRVCALQDDFDSLPNGDFTVVGERGASLSGGQKARINLARAVYKNADIYLLDDPL 241
R +V + L + + P LSGGQ+ R+ L RA+ + ++L+D+PL
Sbjct: 119 RVREVAELLGLTELLNRKP-----------RELSGGQRQRVALGRAIVRKPQVFLMDEPL 167
Query: 242 SAVD 245
S +D
Sbjct: 168 SNLD 171
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI,
protein structure initiative, midwest center for
structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga
maritima} SCOP: c.37.1.12
Length = 240
Score = 52.1 bits (126), Expect = 3e-08
Identities = 37/154 (24%), Positives = 65/154 (42%), Gaps = 29/154 (18%)
Query: 107 LNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSLGGTVSYASQEPW---- 162
+ + + Q+ +IGA GAGKT+ L I +R GK+ G ++
Sbjct: 22 IKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQ-DITNKPAHVINR 80
Query: 163 -----------IFAA-TIRQNILFGLPYLRRRYADVIRVCALQDDFDSLPNGDFTVVGER 210
IF T+ +N++ G Y R+ + R L+ F P + ER
Sbjct: 81 MGIALVPEGRRIFPELTVYENLMMGA-YNRKDKEGIKR--DLEWIFSLFP-----RLKER 132
Query: 211 ----GASLSGGQKARINLARAVYKNADIYLLDDP 240
G +LSGG++ + + RA+ + ++D+P
Sbjct: 133 LKQLGGTLSGGEQQMLAIGRALMSRPKLLMMDEP 166
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET:
ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A*
2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Length = 263
Score = 51.4 bits (124), Expect = 6e-08
Identities = 38/164 (23%), Positives = 65/164 (39%), Gaps = 37/164 (22%)
Query: 107 LNAVSITFKPKQLACIIGAIGAGKTSLLHIILNEL-RISSGKVSLGGTVSYAS------- 158
L +++ + ++ +IG G+GK++ L + N L G++ + G A
Sbjct: 40 LKGINVHIREGEVVVVIGPSGSGKSTFLRCL-NLLEDFDEGEIIIDGINLKAKDTNLNKV 98
Query: 159 --------QEPWIFA-ATIRQNILFGLPYLRRRYADVIRVCALQ--------DDFDSLPN 201
Q +F T+ NI +R+ + A++ D + P
Sbjct: 99 REEVGMVFQRFNLFPHMTVLNNITLAPMKVRKWPREKAEAKAMELLDKVGLKDKAHAYP- 157
Query: 202 GDFTVVGERGASLSGGQKARINLARAVYKNADIYLLDDPLSAVD 245
SLSGGQ R+ +ARA+ I L D+P SA+D
Sbjct: 158 ----------DSLSGGQAQRVAIARALAMEPKIMLFDEPTSALD 191
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP;
1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Length = 262
Score = 50.6 bits (122), Expect = 1e-07
Identities = 37/176 (21%), Positives = 65/176 (36%), Gaps = 49/176 (27%)
Query: 107 LNAVSITFKPKQLACIIGAIGAGKTSLLHIILNEL-RISSGKVSLGGT-VSYASQEPWIF 164
L VS+ + + IIG+ G+GK++ L I N L + S G + + G ++ +
Sbjct: 22 LKGVSLQARAGDVISIIGSSGSGKSTFLRCI-NFLEKPSEGAIIVNGQNINLVRDKDGQL 80
Query: 165 AA--------------------------TIRQNILFGLPYLRRRYADVIRVCA------- 191
T+ +N++ + R A
Sbjct: 81 KVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKHDARERALKYLAKV 140
Query: 192 -LQDDFDSL-PNGDFTVVGERGASLSGGQKARINLARAVYKNADIYLLDDPLSAVD 245
+ + P LSGGQ+ R+++ARA+ D+ L D+P SA+D
Sbjct: 141 GIDERAQGKYP-----------VHLSGGQQQRVSIARALAMEPDVLLFDEPTSALD 185
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt
transport, TM02 hydrolase, inner membrane, membrane,
nucleotide-binding; 2.30A {Thermotoga maritima}
Length = 266
Score = 50.3 bits (121), Expect = 2e-07
Identities = 38/159 (23%), Positives = 60/159 (37%), Gaps = 31/159 (19%)
Query: 107 LNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSLGG----------TVSY 156
L VS+ + + G G+GK++LL I+ + +SG V G +
Sbjct: 23 LENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSGDVLYDGERKKGYEIRRNIGI 82
Query: 157 ASQEP--WIFAATIRQNILFGL------PYLRRRYADVIRVCALQDD--FDSLPNGDFTV 206
A Q P FA + + F + + L D D +P
Sbjct: 83 AFQYPEDQFFAERVFDEVAFAVKNFYPDRDPVPLVKKAMEFVGLDFDSFKDRVPF----- 137
Query: 207 VGERGASLSGGQKARINLARAVYKNADIYLLDDPLSAVD 245
LSGG+K R+ +A + DI +LD+PL +D
Sbjct: 138 ------FLSGGEKRRVAIASVIVHEPDILILDEPLVGLD 170
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein;
structural genomics; 1.70A {Aquifex aeolicus} PDB:
2pcl_A
Length = 224
Score = 48.3 bits (116), Expect = 5e-07
Identities = 42/179 (23%), Positives = 72/179 (40%), Gaps = 48/179 (26%)
Query: 107 LNAVSITFKPKQLACIIGAIGAGKTSLLHII--LNELRISSGKVSLGGT-VSYASQEPWI 163
L +S++ K + IIGA G+GK++LL+I+ L+ + GKV L G V Y +++
Sbjct: 20 LKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLD--APTEGKVFLEGKEVDYTNEKE-- 75
Query: 164 FAATIRQNILFG--------LPYL--------------------RRRYADVIRVCALQDD 195
+ +R N G +P L + R ++ L D
Sbjct: 76 -LSLLR-NRKLGFVFQFHYLIPELTALENVIVPMLKMGKPKKEAKERGEYLLSELGLGDK 133
Query: 196 FDSLPNGDFTVVGERGASLSGGQKARINLARAVYKNADIYLLDDPLSAVDMHVGKHLFE 254
P LSGG++ R+ +ARA+ + D+P +D K + +
Sbjct: 134 LSRKPY-----------ELSGGEQQRVAIARALANEPILLFADEPTGNLDSANTKRVMD 181
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding
protein; beta-core domain; HET: ADP; 1.60A
{Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB:
1gaj_A 1g9x_A*
Length = 257
Score = 46.7 bits (112), Expect = 2e-06
Identities = 32/163 (19%), Positives = 62/163 (38%), Gaps = 34/163 (20%)
Query: 107 LNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKVSLGGTVSYASQEPW-IFA 165
L+ VSI+ + IIG G+GK++L+++I L+ G+V ++EP ++
Sbjct: 23 LDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENK-DITNKEPAELYH 81
Query: 166 ATI-R--QNI-LFG------------------------LPYLRRRYADVIRVCALQDDFD 197
I R Q + +++ +F
Sbjct: 82 YGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFL 141
Query: 198 SLPNGDFTVVGERGASLSGGQKARINLARAVYKNADIYLLDDP 240
L + + + LSGGQ + + RA+ N + ++D+P
Sbjct: 142 KLSH----LYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDEP 180
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 45.4 bits (107), Expect = 1e-05
Identities = 54/304 (17%), Positives = 96/304 (31%), Gaps = 105/304 (34%)
Query: 5 EKPFT-----ALVDQARKIEIGVV-----QKTS--Y---LRGLYMTFNLFTTRMALFCTL 49
++PF AL + +V Q + Y LR LY T+++ +
Sbjct: 134 KRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQTYHVL---------V 184
Query: 50 TSFIFFGGRLSTDRVLNFLLLGEHEPRKINSVHSNGKGHVSLDNVTAQWSLQNADLT--- 106
I + L+ L+ V + G L+ +W L+N T
Sbjct: 185 GDLIK-----FSAETLSELI---RTTLDAEKVFTQG-----LN--ILEW-LENPSNTPDK 228
Query: 107 --LNAVSITFKPKQLACIIGAIGAGKTSLLH--IILNELRISSGKV--SLGGTVSY---- 156
L ++ I+ P +IG L H + L + G++ L G +
Sbjct: 229 DYLLSIPISC-P-----LIGV-----IQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGL 277
Query: 157 ------ASQEPW-IFAATIRQ--NILF--GLPYLRRRYADVIRVCALQDDF--DSLPNGD 203
A + W F ++R+ +LF G+ R + +L DSL N +
Sbjct: 278 VTAVAIAETDSWESFFVSVRKAITVLFFIGV-----RCYEAYPNTSLPPSILEDSLENNE 332
Query: 204 ------FTVVGERGASLSGGQK--ARINLARAVYKNADIYLLDDPLSAVDMHVGKHLFED 255
++ + Q + N K +I L++ V
Sbjct: 333 GVPSPMLSI---SNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGA----KNLV------- 378
Query: 256 CISG 259
+SG
Sbjct: 379 -VSG 381
Score = 32.7 bits (74), Expect = 0.16
Identities = 27/188 (14%), Positives = 53/188 (28%), Gaps = 60/188 (31%)
Query: 8 FTALVD---QARKIEIGVVQKTSYL--RG----LYMTFN----LFTTRMALFCTLTS--- 51
F +VD + KI + + ++ R L T L A F L S
Sbjct: 1693 FETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPALTLMEKAAFEDLKSKGL 1752
Query: 52 ----FIF-------------FGGRLSTD---RVLNF--LLLGEHEPRKINSVHSNGKGHV 89
F +S + V+ + + + PR G+ +
Sbjct: 1753 IPADATFAGHSLGEYAALASLADVMSIESLVEVVFYRGMTMQVAVPR-----DELGRSNY 1807
Query: 90 SLDNVTAQWSLQNADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHII-LNELRISSGK- 147
+ + V+ +F + L ++ +G L+ I+ N +
Sbjct: 1808 GM-----------IAINPGRVAASFSQEALQYVVERVGKRTGWLVEIVNYN----VENQQ 1852
Query: 148 VSLGGTVS 155
G +
Sbjct: 1853 YVAAGDLR 1860
Score = 28.9 bits (64), Expect = 2.0
Identities = 35/160 (21%), Positives = 54/160 (33%), Gaps = 53/160 (33%)
Query: 72 EHEPRKIN--------SV--HSNGKGHVSLDNVTAQWSLQNADLTLNAVSITFKPKQLAC 121
RK+ + HS+ L + L N DL +++F K +
Sbjct: 408 PFSERKLKFSNRFLPVASPFHSH-----LLVPAS---DLINKDLV--KNNVSFNAKDIQI 457
Query: 122 IIGAIGAGKTSLLHIILNELRISSGKV--SLGGTVSYASQEP--W----IFAATIRQNIL 173
+ G +LR+ SG + + V + P W F AT +IL
Sbjct: 458 PVYDTFDGS---------DLRVLSGSISERI---VDCIIRLPVKWETTTQFKAT---HIL 502
Query: 174 -FG------LPYLRRRYADV--IRVCALQDDFDSLPNGDF 204
FG L L R D +RV + D P+ D+
Sbjct: 503 DFGPGGASGLGVLTHRNKDGTGVRV-IVAGTLDINPDDDY 541
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 44.5 bits (104), Expect = 2e-05
Identities = 34/239 (14%), Positives = 69/239 (28%), Gaps = 61/239 (25%)
Query: 22 VVQKTSYLRGLYMTFNLFTTRMALFCTLTSFIFFGGRLSTD--------------RVLNF 67
++ + G F ++ F L + +
Sbjct: 54 IIMSKDAVSGTLRLFWTLLSKQ----EEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMT 109
Query: 68 LLLGEHEPRKINSVHSNGKGHVS-LDNVTAQWSLQNADLTLNAVSITFKPKQLACIIGAI 126
+ E R N K +VS L L+ A L L +P + I G +
Sbjct: 110 RMYIEQRDRLYNDNQVFAKYNVSRLQPY---LKLRQALLEL-------RPAKNVLIDGVL 159
Query: 127 GAGKTSLLHIILNELRISSGKVSLGGTVSYASQEPWIFAATIRQ-----NILFGLPYLRR 181
G+GKT + + ++ + + + W+ ++ +L L L
Sbjct: 160 GSGKTWVALDVCLSYKV---QCKMDFKIF------WL---NLKNCNSPETVLEMLQKLLY 207
Query: 182 RYADVIRVCALQDDFDSLPNGDFTVVGERGASLSGGQKARINLARAVYKNADIYL-LDD 239
+ + ++ S + + + S + R L Y+N L L +
Sbjct: 208 Q---------IDPNWTSRSDHSSNI---KLRIHSIQAELRRLLKSKPYENC--LLVLLN 252
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral
membrane protein, ATPase, ABC transporter, membrane
transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia
coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A*
3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Length = 381
Score = 43.3 bits (103), Expect = 4e-05
Identities = 44/184 (23%), Positives = 69/184 (37%), Gaps = 55/184 (29%)
Query: 89 VSLDNVTAQWSLQNADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHII--LNELRISSG 146
V L NVT W +++ + +G G GK++LL +I L I+SG
Sbjct: 4 VQLQNVTKAWGEVVV---SKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLET--ITSG 58
Query: 147 KVSLGGTV----------------SYA-----SQEPWIFAATIRQNILFGL-------PY 178
+ +G SYA ++ +N+ FGL
Sbjct: 59 DLFIGEKRMNDTPPAERGVGMVFQSYALYPHL---------SVAENMSFGLKLAGAKKEV 109
Query: 179 LRRRYADVIRVCALQDDFDSLPNGDFTVVGERGASLSGGQKARINLARAVYKNADIYLLD 238
+ +R V V L D P +LSGGQ+ R+ + R + ++LLD
Sbjct: 110 INQRVNQVAEVLQLAHLLDRKP-----------KALSGGQRQRVAIGRTLVAEPSVFLLD 158
Query: 239 DPLS 242
+PLS
Sbjct: 159 EPLS 162
>3tif_A Uncharacterized ABC transporter ATP-binding prote;
nucleotide-binding domain, ABC transporter ATPase; HET:
ADP; 1.80A {Methanocaldococcus jannaschii dsm
2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Length = 235
Score = 39.8 bits (94), Expect = 4e-04
Identities = 40/173 (23%), Positives = 69/173 (39%), Gaps = 40/173 (23%)
Query: 107 LNAVSITFKPKQLACIIGAIGAGKTSLLHII--LNELRISSGKVSLGGT-VSYASQEPWI 163
L V++ K + I+G G+GK+++L+II L+ + + G+V + + +
Sbjct: 21 LKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLD--KPTEGEVYIDNIKTNDLDDDE-- 76
Query: 164 FAATIRQNILFG-------------------LPYLRRRYADVIRVCALQDDFDSLPNGDF 204
IR G LP + + + + + L
Sbjct: 77 -LTKIR-RDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECL----- 129
Query: 205 TVVG--ERGAS-----LSGGQKARINLARAVYKNADIYLLDDPLSAVDMHVGK 250
+ ER A+ LSGGQ+ R+ +ARA+ N I L D P A+D G+
Sbjct: 130 KMAELEERFANHKPNQLSGGQQQRVAIARALANNPPIILADQPTWALDSKTGE 182
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold,
coiled-coils, ATP binding, DNA bindi MRE11, replication;
HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A*
1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Length = 339
Score = 37.3 bits (86), Expect = 0.003
Identities = 11/47 (23%), Positives = 20/47 (42%), Gaps = 6/47 (12%)
Query: 214 LSGGQKARINLA------RAVYKNADIYLLDDPLSAVDMHVGKHLFE 254
LSGG++ + LA + + +LD+P +D + L
Sbjct: 249 LSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLIT 295
Score = 35.0 bits (80), Expect = 0.017
Identities = 14/40 (35%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
Query: 99 SLQNADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIIL 138
+++N + + + FK + IIG G+GK+SLL IL
Sbjct: 7 TVKNF-RSHSDTVVEFKEG-INLIIGQNGSGKSSLLDAIL 44
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding,
chromatin regulator, growth regulation, hydrolase,
nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo
sapiens} PDB: 2xsz_A*
Length = 456
Score = 32.6 bits (74), Expect = 0.10
Identities = 14/69 (20%), Positives = 27/69 (39%), Gaps = 2/69 (2%)
Query: 122 IIGAIGAGKTSLLHIILNELRISSGKVSLGGTVSYASQ--EPWIFAATIRQNILFGLPYL 179
+ G G GKT+L I EL + G+ Y+++ + + R+ I +
Sbjct: 68 LAGPPGTGKTALALAIAQELGSKVPFCPMVGSEVYSTEIKKTEVLMENFRRAIGLRIKET 127
Query: 180 RRRYADVIR 188
+ Y +
Sbjct: 128 KEVYEGEVT 136
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold,
coiled-coils, ATPase, exonuclease, endonucle binding,
DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB:
3qkr_A*
Length = 203
Score = 31.9 bits (73), Expect = 0.12
Identities = 11/23 (47%), Positives = 16/23 (69%), Gaps = 1/23 (4%)
Query: 112 ITFKPKQLACIIGAIGAGKTSLL 134
+ FK + + IIG G+GK+SLL
Sbjct: 19 VEFK-EGINLIIGQNGSGKSSLL 40
>1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication;
1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B*
1us8_B*
Length = 148
Score = 31.6 bits (72), Expect = 0.13
Identities = 11/48 (22%), Positives = 20/48 (41%), Gaps = 6/48 (12%)
Query: 213 SLSGGQKARINLA------RAVYKNADIYLLDDPLSAVDMHVGKHLFE 254
LSGG++ + LA + + +LD+P +D + L
Sbjct: 57 FLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLIT 104
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase;
HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A*
2jas_A*
Length = 205
Score = 31.5 bits (71), Expect = 0.17
Identities = 8/23 (34%), Positives = 13/23 (56%)
Query: 121 CIIGAIGAGKTSLLHIILNELRI 143
I G +GAGK+++ I +L
Sbjct: 4 AIFGTVGAGKSTISAEISKKLGY 26
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication;
1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A*
1us8_A*
Length = 149
Score = 30.4 bits (69), Expect = 0.27
Identities = 11/24 (45%), Positives = 15/24 (62%), Gaps = 1/24 (4%)
Query: 111 SITFKPKQLACIIGAIGAGKTSLL 134
+ FK + IIG G+GK+SLL
Sbjct: 18 VVEFKEG-INLIIGQNGSGKSSLL 40
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A
{Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A
1ko5_A* 1ko8_A* 1kof_A*
Length = 175
Score = 30.4 bits (68), Expect = 0.34
Identities = 24/121 (19%), Positives = 48/121 (39%), Gaps = 23/121 (19%)
Query: 111 SITFKPKQLACIIGAIGAGKTSL-------LHIILNE-----LRISSGKVSLGGTVSYAS 158
S T + ++G G+GK+++ LH + R + K++ G ++
Sbjct: 2 STTNHDHHIYVLMGVSGSGKSAVASEVAHQLHAAFLDGDFLHPRRNIEKMASGEPLNDDD 61
Query: 159 QEPWIFA--------ATIRQNILFGLPYLRRRYADVIRVCALQDDFDSL-PNGDFTVVGE 209
++PW+ A + L L++ Y D++R + + GDF V+
Sbjct: 62 RKPWLQALNDAAFAMQRTNKVSLIVCSALKKHYRDLLR--EGNPNLSFIYLKGDFDVIES 119
Query: 210 R 210
R
Sbjct: 120 R 120
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC
transporter ATPase domain-like; HET: DNA ADP; 2.70A
{Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Length = 371
Score = 31.0 bits (70), Expect = 0.37
Identities = 10/23 (43%), Positives = 15/23 (65%), Gaps = 1/23 (4%)
Query: 112 ITFKPKQLACIIGAIGAGKTSLL 134
I F+ K + IIG G+GK+S+
Sbjct: 21 IKFE-KGIVAIIGENGSGKSSIF 42
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex,
transferase; HET: DTP; 2.80A {Homo sapiens} SCOP:
c.37.1.1
Length = 241
Score = 30.9 bits (69), Expect = 0.38
Identities = 5/21 (23%), Positives = 10/21 (47%)
Query: 121 CIIGAIGAGKTSLLHIILNEL 141
I G I GK++ + ++
Sbjct: 6 SIEGNIAVGKSTFVKLLTKTY 26
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein,
feedback inhibition, deoxyribonucleoside kinase, salvage
pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP:
c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A*
2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A*
1zm7_A* 1zmx_A*
Length = 230
Score = 30.4 bits (68), Expect = 0.44
Identities = 8/21 (38%), Positives = 11/21 (52%)
Query: 121 CIIGAIGAGKTSLLHIILNEL 141
I G IG+GKT+ L+
Sbjct: 24 LIEGNIGSGKTTYLNHFEKYK 44
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC,
cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo
sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B*
2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A*
2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A*
2zi7_B* 2zia_A* 3kfx_A* ...
Length = 263
Score = 30.2 bits (67), Expect = 0.57
Identities = 7/21 (33%), Positives = 12/21 (57%)
Query: 121 CIIGAIGAGKTSLLHIILNEL 141
I G I AGK++ ++I+
Sbjct: 28 SIEGNIAAGKSTFVNILKQLC 48
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase,
winged-helix domain, ATP hydrolysis, walker A, walker B,
sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga
maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A*
1in8_A* 1in7_A* 1j7k_A*
Length = 334
Score = 30.2 bits (69), Expect = 0.58
Identities = 13/26 (50%), Positives = 17/26 (65%), Gaps = 4/26 (15%)
Query: 127 GAGKTSLLHIILNEL----RISSGKV 148
G GKT+L HII +EL ++SG V
Sbjct: 61 GLGKTTLAHIIASELQTNIHVTSGPV 86
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide,
hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP:
a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Length = 324
Score = 30.2 bits (69), Expect = 0.63
Identities = 12/26 (46%), Positives = 17/26 (65%), Gaps = 4/26 (15%)
Query: 127 GAGKTSLLHIILNEL----RISSGKV 148
G GKT+L H+I +EL R++SG
Sbjct: 48 GLGKTTLAHVIAHELGVNLRVTSGPA 73
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding
protein; 2.30A {Archaeoglobus fulgidus}
Length = 221
Score = 29.9 bits (68), Expect = 0.64
Identities = 9/21 (42%), Positives = 14/21 (66%)
Query: 122 IIGAIGAGKTSLLHIILNELR 142
I+GAIG+GKT L+ + +
Sbjct: 35 IMGAIGSGKTLLIERTIERIG 55
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable
holliday junction DNA helicase; HET: ADP; 2.69A
{Campylobacter jejuni subsp}
Length = 338
Score = 29.8 bits (68), Expect = 0.75
Identities = 8/26 (30%), Positives = 15/26 (57%), Gaps = 4/26 (15%)
Query: 127 GAGKTSLLHIILNEL----RISSGKV 148
G GKT+L +II E+ + ++ +
Sbjct: 65 GLGKTTLANIISYEMSANIKTTAAPM 90
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and
beta protein; HET: GSP; 1.90A {Methanocaldococcus
jannaschii} PDB: 2hf8_A*
Length = 226
Score = 29.5 bits (67), Expect = 0.77
Identities = 9/21 (42%), Positives = 16/21 (76%)
Query: 122 IIGAIGAGKTSLLHIILNELR 142
+GAIG+GKT L+ +++ L+
Sbjct: 43 FMGAIGSGKTLLIEKLIDNLK 63
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga
maritima} PDB: 3qg5_A 3tho_A*
Length = 365
Score = 29.8 bits (67), Expect = 0.78
Identities = 10/25 (40%), Positives = 14/25 (56%), Gaps = 1/25 (4%)
Query: 110 VSITFKPKQLACIIGAIGAGKTSLL 134
V I F+ + + G GAGK+SL
Sbjct: 17 VDIEFQ-SGITVVEGPNGAGKSSLF 40
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function
initiative, EFI, STRU genomics, transferase; 1.60A
{Janibacter SP}
Length = 200
Score = 29.3 bits (65), Expect = 0.99
Identities = 25/124 (20%), Positives = 46/124 (37%), Gaps = 21/124 (16%)
Query: 113 TFKPKQLACIIGAIGAGKTSL-------LHIILNE-----LRISSGKVSLGGTVSYASQE 160
T +P + ++G G+GKT++ + E + + G ++ +
Sbjct: 25 TGEPTRHVVVMGVSGSGKTTIAHGVADETGLEFAEADAFHSPENIATMQRGIPLTDEDRW 84
Query: 161 PWI--FAATIRQNILFGLPY------LRRRYADVIRVCALQDDFDSLPNGDFTVVGERGA 212
PW+ A + G+ L+R Y DV+R DF +G V+ R +
Sbjct: 85 PWLRSLAEWMDARADAGVSTIITCSALKRTYRDVLREGPPSVDF-LHLDGPAEVIKGRMS 143
Query: 213 SLSG 216
G
Sbjct: 144 KREG 147
>2qgz_A Helicase loader, putative primosome component; structural genomics,
PSI-2, protein structure initiative; 2.40A
{Streptococcus pyogenes serotype M3}
Length = 308
Score = 29.0 bits (65), Expect = 1.3
Identities = 9/29 (31%), Positives = 15/29 (51%)
Query: 122 IIGAIGAGKTSLLHIILNELRISSGKVSL 150
+ G +G GK+ LL + +EL G +
Sbjct: 157 LYGDMGIGKSYLLAAMAHELSEKKGVSTT 185
>2fna_A Conserved hypothetical protein; structural genomics, joint center
for structural genomics, J protein structure initiative,
PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus}
SCOP: a.4.5.11 c.37.1.20
Length = 357
Score = 28.9 bits (64), Expect = 1.8
Identities = 8/26 (30%), Positives = 15/26 (57%)
Query: 117 KQLACIIGAIGAGKTSLLHIILNELR 142
+ ++G GK+S++ I +NEL
Sbjct: 30 APITLVLGLRRTGKSSIIKIGINELN 55
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL
helix motif, transcription regulator; 3.20A
{Streptococcus pneumoniae}
Length = 253
Score = 28.7 bits (63), Expect = 2.0
Identities = 9/28 (32%), Positives = 14/28 (50%), Gaps = 1/28 (3%)
Query: 115 KPKQLACIIGAIGAGKTSLLHIILNELR 142
+P + G GAGKT++ I E +
Sbjct: 31 QPI-AILLGGQSGAGKTTIHRIKQKEFQ 57
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with
oligonucleotide binding fold, central GTP binding
domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5
c.37.1.8
Length = 307
Score = 28.3 bits (64), Expect = 2.8
Identities = 10/23 (43%), Positives = 16/23 (69%)
Query: 127 GAGKTSLLHIILNELRISSGKVS 149
G GK+SLL+ I EL + + ++S
Sbjct: 183 GVGKSSLLNAISPELGLRTNEIS 205
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural
genomics, BSGC structure funded by NIH, protein
structure initiative, PSI; HET: GDP; 2.80A {Thermotoga
maritima} SCOP: b.40.4.5 c.37.1.8
Length = 301
Score = 27.9 bits (63), Expect = 3.2
Identities = 10/23 (43%), Positives = 15/23 (65%)
Query: 127 GAGKTSLLHIILNELRISSGKVS 149
G GK+SLL+ I L++ +VS
Sbjct: 179 GVGKSSLLNAINPGLKLRVSEVS 201
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA
sliding clamp, AAA+ at polymerase, DNA-binding protein;
HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP:
a.80.1.1 c.37.1.20
Length = 516
Score = 27.9 bits (62), Expect = 3.7
Identities = 16/69 (23%), Positives = 25/69 (36%), Gaps = 2/69 (2%)
Query: 75 PRKINSVHSNGKGHVSLDNVTAQWSLQNADLTLNAVSITFKPKQLACII-GAIGAGKTSL 133
P + V N + L N A W + + A ++ G G GKT+
Sbjct: 35 PTNLQQVCGNKGSVMKLKNWLANWE-NSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTA 93
Query: 134 LHIILNELR 142
H++ EL
Sbjct: 94 AHLVAQELG 102
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase;
NMR {Homo sapiens} SCOP: c.37.1.11
Length = 189
Score = 27.4 bits (60), Expect = 4.2
Identities = 10/28 (35%), Positives = 14/28 (50%)
Query: 122 IIGAIGAGKTSLLHIILNELRISSGKVS 149
+ G G GKT+L+H L+ S V
Sbjct: 6 LTGPPGVGKTTLIHKASEVLKSSGVPVD 33
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292;
mixed alpha-beta protein, rossman fold, signaling
protein, transferase; 1.40A {Aquifex aeolicus} SCOP:
c.37.1.11
Length = 178
Score = 27.3 bits (60), Expect = 4.4
Identities = 9/25 (36%), Positives = 13/25 (52%)
Query: 122 IIGAIGAGKTSLLHIILNELRISSG 146
I G G GKT+L+ I+ L +
Sbjct: 5 ITGEPGVGKTTLVKKIVERLGKRAI 29
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A
motif, P-loop, signature motif,
replication/recombination complex; HET: DNA; 1.61A
{Deinococcus radiodurans}
Length = 359
Score = 27.6 bits (62), Expect = 4.5
Identities = 10/26 (38%), Positives = 14/26 (53%), Gaps = 1/26 (3%)
Query: 109 AVSITFKPKQLACIIGAIGAGKTSLL 134
++ F + I G GAGKT+LL
Sbjct: 19 PGTLNFPEG-VTGIYGENGAGKTNLL 43
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3;
winged-helix domain, helix-turn-helix, AAA+ ATPase
domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A
{Sulfolobus solfataricus}
Length = 384
Score = 27.4 bits (60), Expect = 4.9
Identities = 11/51 (21%), Positives = 17/51 (33%)
Query: 122 IIGAIGAGKTSLLHIILNELRISSGKVSLGGTVSYASQEPWIFAATIRQNI 172
+G G GKT + I NE+ + V A T + +
Sbjct: 50 FLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCREVGGTPQAVL 100
>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial
conjugation, F1-ATPase-like quaternary structure, ring
helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB:
1e9s_A 1gki_A* 1gl7_A* 1gl6_A*
Length = 437
Score = 27.6 bits (61), Expect = 4.9
Identities = 14/79 (17%), Positives = 26/79 (32%), Gaps = 2/79 (2%)
Query: 71 GEHEPRKINSVHSNGKGHVSLDNVTAQWSLQNADLTLNAVSITFKPKQL-ACIIGAIGAG 129
GE G VS + + +T+ V + + + GA G G
Sbjct: 7 GEFGGAPFKRFLR-GTRIVSGGKLKRMTREKAKQVTVAGVPMPRDAEPRHLLVNGATGTG 65
Query: 130 KTSLLHIILNELRISSGKV 148
K+ LL + + ++
Sbjct: 66 KSVLLRELAYTGLLRGDRM 84
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus
abyssi}
Length = 350
Score = 27.4 bits (60), Expect = 5.9
Identities = 10/29 (34%), Positives = 14/29 (48%)
Query: 114 FKPKQLACIIGAIGAGKTSLLHIILNELR 142
+ L ++G GK+SLL LNE
Sbjct: 28 LENYPLTLLLGIRRVGKSSLLRAFLNERP 56
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET:
GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Length = 270
Score = 27.2 bits (60), Expect = 6.0
Identities = 8/25 (32%), Positives = 15/25 (60%)
Query: 122 IIGAIGAGKTSLLHIILNELRISSG 146
++G G GK+S ++ I+ E +S
Sbjct: 44 VMGKGGVGKSSTVNSIIGERVVSIS 68
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding
protein, ring protein, octamer, AAA ATPase; 3.20A {Homo
sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Length = 343
Score = 27.2 bits (60), Expect = 6.4
Identities = 9/39 (23%), Positives = 14/39 (35%)
Query: 122 IIGAIGAGKTSLLHIILNELRISSGKVSLGGTVSYASQE 160
G GKT L H + ++ GG + + E
Sbjct: 127 AFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTE 165
>2w58_A DNAI, primosome component (helicase loader); ATP-binding,
nucleotide-binding, hydrolase; HET: ADP; 2.50A
{Geobacillus kaustophilus HTA426}
Length = 202
Score = 26.6 bits (59), Expect = 6.8
Identities = 11/20 (55%), Positives = 13/20 (65%)
Query: 122 IIGAIGAGKTSLLHIILNEL 141
+ G+ G GKT LL I NEL
Sbjct: 59 LHGSFGVGKTYLLAAIANEL 78
>1osn_A Thymidine kinase, VZV-TK; chickenpox, BVDU-MP, transferase; HET:
BVP ADP; 3.20A {Human herpesvirus 3} SCOP: c.37.1.1
Length = 341
Score = 27.1 bits (59), Expect = 7.0
Identities = 8/28 (28%), Positives = 14/28 (50%)
Query: 121 CIIGAIGAGKTSLLHIILNELRISSGKV 148
+ GA G GKT+ L+ I+ ++
Sbjct: 16 YLDGAYGIGKTTAAEEFLHHFAITPNRI 43
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium,
SGC, cytoplasm, nucleotide-binding, nucleus,
phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB:
2q3f_A*
Length = 196
Score = 26.9 bits (59), Expect = 7.0
Identities = 7/27 (25%), Positives = 18/27 (66%), Gaps = 2/27 (7%)
Query: 115 KPKQLACIIGAIGAGKTSLLHIILNEL 141
KP+ L ++G +GK+S+ ++ +++
Sbjct: 20 KPRIL--LMGLRRSGKSSIQKVVFHKM 44
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair,
nucleotide excision repai hydrolase-DNA complex; HET:
DNA; 2.90A {Thermotoga maritima}
Length = 916
Score = 27.0 bits (61), Expect = 7.0
Identities = 13/30 (43%), Positives = 18/30 (60%), Gaps = 3/30 (10%)
Query: 214 LSGGQKARINLARAVYKNAD---IYLLDDP 240
LSGG+ RI LA + K +Y+LD+P
Sbjct: 806 LSGGEAQRIKLASELRKRDTGRTLYILDEP 835
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase;
1.90A {Tomato mosaic virus}
Length = 446
Score = 27.1 bits (59), Expect = 7.8
Identities = 9/49 (18%), Positives = 16/49 (32%), Gaps = 3/49 (6%)
Query: 100 LQNADLTLNAVSITFKPKQLACIIGAIGAGKTSLLHIILNELRISSGKV 148
L+ L ++ + G G GKT IL+ + +
Sbjct: 144 LRTLRRLLKDGEPHVSSAKVVLVDGVPGCGKT---KEILSRVNFEEDLI 189
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed
alpha-beta fold, elongated beta-sheet, walker A motif,
P-loop structural motif; 1.90A {Escherichia coli} SCOP:
c.37.1.10 PDB: 1p9n_A
Length = 174
Score = 26.4 bits (57), Expect = 8.8
Identities = 7/22 (31%), Positives = 10/22 (45%)
Query: 121 CIIGAIGAGKTSLLHIILNELR 142
G GKT+LL ++ L
Sbjct: 10 AFAAWSGTGKTTLLKKLIPALC 31
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA
repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A
{Geobacillus}
Length = 670
Score = 26.7 bits (60), Expect = 9.8
Identities = 11/30 (36%), Positives = 21/30 (70%), Gaps = 3/30 (10%)
Query: 214 LSGGQKARINLARAVYKNAD---IYLLDDP 240
LSGG+ R+ LA +++ ++ +Y+LD+P
Sbjct: 544 LSGGEAQRVKLAAELHRRSNGRTLYILDEP 573
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR
complex, HMR, HML, TELO AAA+ domain, structural,
nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Length = 318
Score = 26.4 bits (57), Expect = 9.8
Identities = 8/26 (30%), Positives = 15/26 (57%)
Query: 122 IIGAIGAGKTSLLHIILNELRISSGK 147
I A + K L++ +++EL SS +
Sbjct: 50 ITNADDSTKFQLVNDVMDELITSSAR 75
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.324 0.139 0.414
Gapped
Lambda K H
0.267 0.0529 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,004,153
Number of extensions: 232738
Number of successful extensions: 844
Number of sequences better than 10.0: 1
Number of HSP's gapped: 780
Number of HSP's successfully gapped: 126
Length of query: 265
Length of database: 6,701,793
Length adjustment: 92
Effective length of query: 173
Effective length of database: 4,133,061
Effective search space: 715019553
Effective search space used: 715019553
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 56 (25.8 bits)