BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy15032
(226 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1J74|A Chain A, Crystal Structure Of Mms2
pdb|1J7D|A Chain A, Crystal Structure Of Hmms2-Hubc13
Length = 145
Score = 163 bits (413), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 70/90 (77%), Positives = 82/90 (91%)
Query: 76 VPRNFRLLEELEHGQRGVGDGTISWGLENDDDMTLTHWTGMIIGPPRTPYENRMYSLKIE 135
VPRNFRLLEELE GQ+GVGDGT+SWGLE+D+DMTLT WTGMIIGPPRT YENR+YSLK+E
Sbjct: 9 VPRNFRLLEELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTNYENRIYSLKVE 68
Query: 136 CGPRYPDEPPQCRFVSRINMTCINNTSGIV 165
CGP+YP+ PP RFV++INM INN+SG+V
Sbjct: 69 CGPKYPEAPPSVRFVTKINMNGINNSSGMV 98
>pdb|4EPO|A Chain A, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|E Chain E, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|I Chain I, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
Length = 149
Score = 163 bits (412), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 70/90 (77%), Positives = 82/90 (91%)
Query: 76 VPRNFRLLEELEHGQRGVGDGTISWGLENDDDMTLTHWTGMIIGPPRTPYENRMYSLKIE 135
VPRNFRLLEELE GQ+GVGDGT+SWGLE+D+DMTLT WTGMIIGPPRT YENR+YSLK+E
Sbjct: 14 VPRNFRLLEELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTNYENRIYSLKVE 73
Query: 136 CGPRYPDEPPQCRFVSRINMTCINNTSGIV 165
CGP+YP+ PP RFV++INM INN+SG+V
Sbjct: 74 CGPKYPEAPPSVRFVTKINMNGINNSSGMV 103
>pdb|3VON|B Chain B, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|D Chain D, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|F Chain F, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|I Chain I, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|K Chain K, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|M Chain M, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|P Chain P, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|R Chain R, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|T Chain T, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|W Chain W, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|Y Chain Y, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|AA Chain a, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|DD Chain d, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|FF Chain f, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|HH Chain h, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|KK Chain k, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|MM Chain m, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|OO Chain o, Crystalstructure Of The Ubiquitin Protease
Length = 138
Score = 163 bits (412), Expect = 9e-41, Method: Compositional matrix adjust.
Identities = 70/90 (77%), Positives = 82/90 (91%)
Query: 76 VPRNFRLLEELEHGQRGVGDGTISWGLENDDDMTLTHWTGMIIGPPRTPYENRMYSLKIE 135
VPRNFRLLEELE GQ+GVGDGT+SWGLE+D+DMTLT WTGMIIGPPRT YENR+YSLK+E
Sbjct: 4 VPRNFRLLEELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTNYENRIYSLKVE 63
Query: 136 CGPRYPDEPPQCRFVSRINMTCINNTSGIV 165
CGP+YP+ PP RFV++INM INN+SG+V
Sbjct: 64 CGPKYPEAPPSVRFVTKINMNGINNSSGMV 93
>pdb|1ZGU|A Chain A, Solution Structure Of The Human Mms2-Ubiquitin Complex
Length = 139
Score = 162 bits (411), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 70/90 (77%), Positives = 82/90 (91%)
Query: 76 VPRNFRLLEELEHGQRGVGDGTISWGLENDDDMTLTHWTGMIIGPPRTPYENRMYSLKIE 135
VPRNFRLLEELE GQ+GVGDGT+SWGLE+D+DMTLT WTGMIIGPPRT YENR+YSLK+E
Sbjct: 3 VPRNFRLLEELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTNYENRIYSLKVE 62
Query: 136 CGPRYPDEPPQCRFVSRINMTCINNTSGIV 165
CGP+YP+ PP RFV++INM INN+SG+V
Sbjct: 63 CGPKYPEAPPSVRFVTKINMNGINNSSGMV 92
>pdb|2HLW|A Chain A, Solution Structure Of The Human Ubiquitin-Conjugating
Enzyme Variant Uev1a
Length = 170
Score = 159 bits (401), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 71/100 (71%), Positives = 85/100 (85%), Gaps = 3/100 (3%)
Query: 66 FHCYLKLFSVVPRNFRLLEELEHGQRGVGDGTISWGLENDDDMTLTHWTGMIIGPPRTPY 125
FHC VPRNFRLLEELE GQ+GVGDGT+SWGLE+D+DMTLT WTGMIIGPPRT Y
Sbjct: 27 FHCK---GVKVPRNFRLLEELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTIY 83
Query: 126 ENRMYSLKIECGPRYPDEPPQCRFVSRINMTCINNTSGIV 165
ENR+YSLKIECGP+YP+ PP RFV++INM +N+++G+V
Sbjct: 84 ENRIYSLKIECGPKYPEAPPFVRFVTKINMNGVNSSNGVV 123
>pdb|2A4D|A Chain A, Structure Of The Human Ubiquitin-Conjugating Enzyme E2
Variant 1 (Uev- 1)
Length = 160
Score = 157 bits (396), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 68/90 (75%), Positives = 82/90 (91%)
Query: 76 VPRNFRLLEELEHGQRGVGDGTISWGLENDDDMTLTHWTGMIIGPPRTPYENRMYSLKIE 135
VPRNFRLLEELE GQ+GVGDGT+SWGLE+D+DMTLT WTGMIIGPPRT YENR+YSLKIE
Sbjct: 24 VPRNFRLLEELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTIYENRIYSLKIE 83
Query: 136 CGPRYPDEPPQCRFVSRINMTCINNTSGIV 165
CGP+YP+ PP RFV++INM +N+++G+V
Sbjct: 84 CGPKYPEAPPFVRFVTKINMNGVNSSNGVV 113
>pdb|2C2V|C Chain C, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
pdb|2C2V|F Chain F, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
pdb|2C2V|I Chain I, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
pdb|2C2V|L Chain L, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
Length = 142
Score = 156 bits (395), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 67/90 (74%), Positives = 82/90 (91%)
Query: 76 VPRNFRLLEELEHGQRGVGDGTISWGLENDDDMTLTHWTGMIIGPPRTPYENRMYSLKIE 135
VPRNFRLLEELE GQ+GVGDGT+SWGLE+D+DMTLT WTGMI+GPPRT YENR+YSLKIE
Sbjct: 6 VPRNFRLLEELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMILGPPRTIYENRIYSLKIE 65
Query: 136 CGPRYPDEPPQCRFVSRINMTCINNTSGIV 165
CGP+YP+ PP RFV++INM +N+++G+V
Sbjct: 66 CGPKYPEAPPFVRFVTKINMNGVNSSNGVV 95
>pdb|2GMI|B Chain B, Mms2UBC13~UBIQUITIN
Length = 137
Score = 124 bits (311), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 53/93 (56%), Positives = 71/93 (76%)
Query: 73 FSVVPRNFRLLEELEHGQRGVGDGTISWGLENDDDMTLTHWTGMIIGPPRTPYENRMYSL 132
S VPRNFRLLEELE G++G G + S+GL + DD+T+T W G I+GPP + +ENR+YSL
Sbjct: 1 MSKVPRNFRLLEELEKGEKGFGPESCSYGLADSDDITMTKWNGTILGPPHSNHENRIYSL 60
Query: 133 KIECGPRYPDEPPQCRFVSRINMTCINNTSGIV 165
I+CGP YPD PP+ F+S+IN+ C+N T+G V
Sbjct: 61 SIDCGPNYPDSPPKVTFISKINLPCVNPTTGEV 93
>pdb|1JAT|B Chain B, Mms2UBC13 UBIQUITIN CONJUGATING ENZYME COMPLEX
Length = 138
Score = 124 bits (311), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 53/93 (56%), Positives = 71/93 (76%)
Query: 73 FSVVPRNFRLLEELEHGQRGVGDGTISWGLENDDDMTLTHWTGMIIGPPRTPYENRMYSL 132
S VPRNFRLLEELE G++G G + S+GL + DD+T+T W G I+GPP + +ENR+YSL
Sbjct: 2 MSKVPRNFRLLEELEKGEKGFGPESCSYGLADSDDITMTKWNGTILGPPHSNHENRIYSL 61
Query: 133 KIECGPRYPDEPPQCRFVSRINMTCINNTSGIV 165
I+CGP YPD PP+ F+S+IN+ C+N T+G V
Sbjct: 62 SIDCGPNYPDSPPKVTFISKINLPCVNPTTGEV 94
>pdb|3E95|C Chain C, Crystal Structure Of The Plasmodium Falciparum Ubiquitin
Conjugating Enzyme Complex, Pfubc13-Pfuev1a
Length = 158
Score = 101 bits (251), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 44/91 (48%), Positives = 65/91 (71%)
Query: 75 VVPRNFRLLEELEHGQRGVGDGTISWGLENDDDMTLTHWTGMIIGPPRTPYENRMYSLKI 134
+VPR+FRLL+ELE GQ+G +S+GLE+ DD+TL++W+ I G P T +ENR+YSL I
Sbjct: 23 IVPRSFRLLDELERGQKGNVSEGVSFGLESADDITLSNWSCTIFGQPGTVFENRIYSLTI 82
Query: 135 ECGPRYPDEPPQCRFVSRINMTCINNTSGIV 165
C YPD PP +F ++I M+C++N ++
Sbjct: 83 FCDDNYPDSPPTVKFDTKIEMSCVDNCGRVI 113
>pdb|2Q0V|A Chain A, Crystal Structure Of Ubiquitin Conjugating Enzyme E2,
Putative, From Plasmodium Falciparum
Length = 156
Score = 100 bits (250), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 44/91 (48%), Positives = 65/91 (71%)
Query: 75 VVPRNFRLLEELEHGQRGVGDGTISWGLENDDDMTLTHWTGMIIGPPRTPYENRMYSLKI 134
+VPR+FRLL+ELE GQ+G +S+GLE+ DD+TL++W+ I G P T +ENR+YSL I
Sbjct: 19 IVPRSFRLLDELERGQKGNVSEGVSFGLESADDITLSNWSCTIFGQPGTVFENRIYSLTI 78
Query: 135 ECGPRYPDEPPQCRFVSRINMTCINNTSGIV 165
C YPD PP +F ++I M+C++N ++
Sbjct: 79 FCDDNYPDSPPTVKFDTKIEMSCVDNCGRVI 109
>pdb|2BEP|A Chain A, Crystal Structure Of Ubiquitin Conjugating Enzyme E2-25k
pdb|2BF8|A Chain A, Crystal Structure Of Sumo Modified Ubiquitin Conjugating
Enzyme E2-25k
Length = 159
Score = 49.7 bits (117), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 33/59 (55%)
Query: 107 DMTLTHWTGMIIGPPRTPYENRMYSLKIECGPRYPDEPPQCRFVSRINMTCINNTSGIV 165
D T G I GPP TPYE Y L+I+ YP PP+ RF+++I I++ +G +
Sbjct: 37 DENFTELRGEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITKIWHPNISSVTGAI 95
>pdb|1YLA|A Chain A, Ubiquitin-Conjugating Enzyme E2-25 Kda (Huntington
Interacting Protein 2)
pdb|1YLA|B Chain B, Ubiquitin-Conjugating Enzyme E2-25 Kda (Huntington
Interacting Protein 2)
pdb|2O25|A Chain A, Ubiquitin-Conjugating Enzyme E2-25 Kda Complexed With
Sumo-1- Conjugating Enzyme Ubc9
pdb|2O25|B Chain B, Ubiquitin-Conjugating Enzyme E2-25 Kda Complexed With
Sumo-1- Conjugating Enzyme Ubc9
Length = 202
Score = 49.7 bits (117), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 33/59 (55%)
Query: 107 DMTLTHWTGMIIGPPRTPYENRMYSLKIECGPRYPDEPPQCRFVSRINMTCINNTSGIV 165
D T G I GPP TPYE Y L+I+ YP PP+ RF+++I I++ +G +
Sbjct: 35 DENFTELRGEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITKIWHPNISSVTGAI 93
>pdb|3K9O|A Chain A, The Crystal Structure Of E2-25k And Ubb+1 Complex
Length = 201
Score = 49.7 bits (117), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 33/59 (55%)
Query: 107 DMTLTHWTGMIIGPPRTPYENRMYSLKIECGPRYPDEPPQCRFVSRINMTCINNTSGIV 165
D T G I GPP TPYE Y L+I+ YP PP+ RF+++I I++ +G +
Sbjct: 34 DENFTELRGEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITKIWHPNISSVTGAI 92
>pdb|3E46|A Chain A, Crystal Structure Of Ubiquitin-Conjugating Enzyme E2-25kda
(Huntington Interacting Protein 2) M172a Mutant
pdb|3F92|A Chain A, Crystal Structure Of Ubiquitin-Conjugating Enzyme E2-25kda
(Huntington Interacting Protein 2) M172a Mutant
Crystallized At Ph 8.5
Length = 253
Score = 49.7 bits (117), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 33/59 (55%)
Query: 107 DMTLTHWTGMIIGPPRTPYENRMYSLKIECGPRYPDEPPQCRFVSRINMTCINNTSGIV 165
D T G I GPP TPYE Y L+I+ YP PP+ RF+++I I++ +G +
Sbjct: 86 DENFTELRGEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITKIWHPNISSVTGAI 144
>pdb|3K9P|A Chain A, The Crystal Structure Of E2-25k And Ubiquitin Complex
Length = 217
Score = 49.3 bits (116), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 33/59 (55%)
Query: 107 DMTLTHWTGMIIGPPRTPYENRMYSLKIECGPRYPDEPPQCRFVSRINMTCINNTSGIV 165
D T G I GPP TPYE Y L+I+ YP PP+ RF+++I I++ +G +
Sbjct: 50 DENFTELRGEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITKIWHPNISSVTGAI 108
>pdb|1Z2U|A Chain A, The 1.1a Crystallographic Structure Of Ubiquitin-
Conjugating Enzyme (Ubc-2) From Caenorhabditis Elegans:
Functional And Evolutionary Significance
Length = 150
Score = 47.8 bits (112), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 44/89 (49%), Gaps = 4/89 (4%)
Query: 81 RLLEELEHGQRGVGDGTISWGLENDDDMTLTHWTGMIIGPPRTPYENRMYSLKIECGPRY 140
R+ +EL+ R S G DD L HW I+GPP +PY+ ++ L I Y
Sbjct: 8 RIQKELQDLGRDP-PAQCSAGPVGDD---LFHWQATIMGPPESPYQGGVFFLTIHFPTDY 63
Query: 141 PDEPPQCRFVSRINMTCINNTSGIVVVIM 169
P +PP+ F +RI IN+ I + I+
Sbjct: 64 PFKPPKVAFTTRIYHPNINSNGSICLDIL 92
>pdb|2F4Z|A Chain A, Toxoplasma Gondii Ubiquitin Conjugating Enzyme
Tgtwinscan_2721- E2 Domain
pdb|2F4Z|B Chain B, Toxoplasma Gondii Ubiquitin Conjugating Enzyme
Tgtwinscan_2721- E2 Domain
Length = 193
Score = 46.2 bits (108), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 31/53 (58%)
Query: 113 WTGMIIGPPRTPYENRMYSLKIECGPRYPDEPPQCRFVSRINMTCINNTSGIV 165
W G I GP TPYE ++L I P YP PP+ +FV++I I++ +G +
Sbjct: 77 WRGFIAGPLGTPYEGGHFTLDIVIPPDYPYNPPKMKFVTKIWHPNISSQTGAI 129
>pdb|1AYZ|A Chain A, Crystal Structure Of The Saccharomyces Cerevisiae
Ubiquitin- Conjugating Enzyme Rad6 (Ubc2) At 2.6a
Resolution
pdb|1AYZ|B Chain B, Crystal Structure Of The Saccharomyces Cerevisiae
Ubiquitin- Conjugating Enzyme Rad6 (Ubc2) At 2.6a
Resolution
pdb|1AYZ|C Chain C, Crystal Structure Of The Saccharomyces Cerevisiae
Ubiquitin- Conjugating Enzyme Rad6 (Ubc2) At 2.6a
Resolution
Length = 169
Score = 46.2 bits (108), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 39/78 (50%), Gaps = 4/78 (5%)
Query: 76 VPRNFRLLEELEHGQRGVGDGTISWGLENDDDMTLTHWTGMIIGPPRTPYENRMYSLKIE 135
P RL+ + + + G + L ++ + W MIIGP TPYE+ + L +E
Sbjct: 3 TPARRRLMRDFKRMKEDAPPGVSASPLPDN----VMVWNAMIIGPADTPYEDGTFRLLLE 58
Query: 136 CGPRYPDEPPQCRFVSRI 153
YP++PP +F+S +
Sbjct: 59 FDEEYPNKPPHVKFLSEM 76
>pdb|1JAS|A Chain A, Hsubc2b
pdb|2YB6|A Chain A, Native Human Rad6
pdb|2YBF|A Chain A, Complex Of Rad18 (Rad6 Binding Domain) With Rad6b
pdb|2Y4W|A Chain A, Solution Structure Of Human Ubiquitin Conjugating Enzyme
Rad6b
Length = 152
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 38/78 (48%), Gaps = 4/78 (5%)
Query: 76 VPRNFRLLEELEHGQRGVGDGTISWGLENDDDMTLTHWTGMIIGPPRTPYENRMYSLKIE 135
P RL+ + + Q G EN+ + W +I GP TP+E+ + L IE
Sbjct: 3 TPARRRLMRDFKRLQEDPPVGVSGAPSENN----IMQWNAVIFGPEGTPFEDGTFKLVIE 58
Query: 136 CGPRYPDEPPQCRFVSRI 153
YP++PP RF+S++
Sbjct: 59 FSEEYPNKPPTVRFLSKM 76
>pdb|2OXQ|A Chain A, Structure Of The Ubch5 :chip U-Box Complex
pdb|2OXQ|B Chain B, Structure Of The Ubch5 :chip U-Box Complex
Length = 152
Score = 45.8 bits (107), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 44/89 (49%), Gaps = 4/89 (4%)
Query: 81 RLLEELEHGQRGVGDGTISWGLENDDDMTLTHWTGMIIGPPRTPYENRMYSLKIECGPRY 140
R+ +EL+ QR S G DD L HW I+GP +PY+ ++ L I Y
Sbjct: 10 RIQKELQDLQRDPP-AQCSAGPVGDD---LFHWQATIMGPSDSPYQGGVFFLTIHFPTDY 65
Query: 141 PDEPPQCRFVSRINMTCINNTSGIVVVIM 169
P +PP+ F ++I IN+ I + I+
Sbjct: 66 PFKPPKVAFTTKIYHPNINSNGSICLDIL 94
>pdb|1PZV|A Chain A, Crystal Structures Of Two Ubc (E2) Enzymes Of The
Ubiquitin- Conjugating System In Caenorhabditis Elegans
Length = 164
Score = 45.8 bits (107), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 40/138 (28%), Positives = 65/138 (47%), Gaps = 19/138 (13%)
Query: 82 LLEELEHGQRGVGDGTISWGLENDDDMTLTHWTGMIIGPPRTPYENRMYSLKIECGPRYP 141
L ++L +R DG S GL +D+D + W ++IGPP T YE + ++ YP
Sbjct: 8 LKKQLADMRRVPVDG-FSAGLVDDND--IYKWEVLVIGPPDTLYEGGFFKAILDFPRDYP 64
Query: 142 DEPPQCRFVSRINMTCINNTSGIVVVIMFWVMIEAKATHYPVDLKTG--TPDQVYLIV-- 197
+PP+ +F+S I I+ + + I+ H P D K G P++ +L V
Sbjct: 65 QKPPKMKFISEIWHPNIDKEGNVCISIL----------HDPGDDKWGYERPEERWLPVHT 114
Query: 198 --CVLIRYQVDLTDRPFQ 213
+L+ LTD F+
Sbjct: 115 VETILLSVISMLTDPNFE 132
>pdb|2PWQ|A Chain A, Crystal Structure Of A Putative Ubiquitin Conjugating
Enzyme From Plasmodium Yoelii
Length = 216
Score = 45.4 bits (106), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 31/59 (52%)
Query: 107 DMTLTHWTGMIIGPPRTPYENRMYSLKIECGPRYPDEPPQCRFVSRINMTCINNTSGIV 165
D W G I GP TPYE ++L I YP PP+ +FV++I I++ +G +
Sbjct: 49 DSNFFEWVGFIKGPEGTPYEGGHFTLAITIPNDYPYNPPKIKFVTKIWHPNISSQTGAI 107
>pdb|2AAK|A Chain A, Ubiquitin Conjugating Enzyme From Arabidopsis Thaliana
Length = 152
Score = 45.1 bits (105), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 42/78 (53%), Gaps = 4/78 (5%)
Query: 76 VPRNFRLLEELEHGQRGVGDGTISWGLENDDDMTLTHWTGMIIGPPRTPYENRMYSLKIE 135
P RL+ + + Q+ G IS G D+++ L W +I GP TP++ + L ++
Sbjct: 3 TPARKRLMRDFKRLQQDPPAG-IS-GAPQDNNIML--WNAVIFGPDDTPWDGGTFKLSLQ 58
Query: 136 CGPRYPDEPPQCRFVSRI 153
YP++PP RFVSR+
Sbjct: 59 FSEDYPNKPPTVRFVSRM 76
>pdb|1FXT|A Chain A, Structure Of A Conjugating Enzyme-Ubiquitin Thiolester
Complex
pdb|1FZY|A Chain A, Crystal Structure Of Saccharomyces Cerevisiae Ubiquitin
Conjugating Enzyme 1
pdb|1FZY|B Chain B, Crystal Structure Of Saccharomyces Cerevisiae Ubiquitin
Conjugating Enzyme 1
Length = 149
Score = 45.1 bits (105), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 44/88 (50%), Gaps = 3/88 (3%)
Query: 78 RNFRLLEELEHGQRGVGDGTISWGLENDDDMTLTHWTGMIIGPPRTPYENRMYSLKIECG 137
R R+++E+ Q D LE + + H G +GPP TPYE + + IE
Sbjct: 2 RAKRIMKEI---QAVKDDPAAHITLEFVSESDIHHLKGTFLGPPGTPYEGGKFVVDIEVP 58
Query: 138 PRYPDEPPQCRFVSRINMTCINNTSGIV 165
YP +PP+ +F +++ I++ +G +
Sbjct: 59 MEYPFKPPKMQFDTKVYHPNISSVTGAI 86
>pdb|4DDG|A Chain A, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDG|B Chain B, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDG|C Chain C, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDG|J Chain J, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDG|K Chain K, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDG|L Chain L, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDI|A Chain A, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDI|B Chain B, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDI|C Chain C, Crystal Structure Of Human Otub1UBCH5B~UBUB
Length = 399
Score = 45.1 bits (105), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 34/64 (53%), Gaps = 2/64 (3%)
Query: 106 DDMTLTHWTGMIIGPPRTPYENRMYSLKIECGPRYPDEPPQCRFVSRINMTCINNTSGIV 165
DDM HW I+GP +PY+ ++ L I YP +PP+ F +RI IN+ I
Sbjct: 30 DDMF--HWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSIS 87
Query: 166 VVIM 169
+ I+
Sbjct: 88 LDIL 91
>pdb|1Z3D|A Chain A, Protein Crystal Growth Improvement Leading To The 2.5a
Crystallographic Structure Of Ubiquitin-Conjugating
Enzyme (Ubc-1) From Caenorhabditis Elegans
Length = 157
Score = 44.7 bits (104), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 40/79 (50%), Gaps = 4/79 (5%)
Query: 75 VVPRNFRLLEELEHGQRGVGDGTISWGLENDDDMTLTHWTGMIIGPPRTPYENRMYSLKI 134
P RL+ + + Q G +S D+ +T W +I GP TP+E+ + L +
Sbjct: 5 TTPSRRRLMRDFKKLQEDPPAG-VSGAPTEDNILT---WEAIIFGPQETPFEDGTFKLSL 60
Query: 135 ECGPRYPDEPPQCRFVSRI 153
E YP++PP +F+S++
Sbjct: 61 EFTEEYPNKPPTVKFISKM 79
>pdb|1Q34|A Chain A, Crystal Structures Of Two Ubc (E2) Enzymes Of The
Ubiquitin- Conjugating System In Caenorhabditis Elegans
pdb|1Q34|B Chain B, Crystal Structures Of Two Ubc (E2) Enzymes Of The
Ubiquitin- Conjugating System In Caenorhabditis Elegans
pdb|1Q34|C Chain C, Crystal Structures Of Two Ubc (E2) Enzymes Of The
Ubiquitin- Conjugating System In Caenorhabditis Elegans
Length = 163
Score = 44.7 bits (104), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 40/79 (50%), Gaps = 4/79 (5%)
Query: 75 VVPRNFRLLEELEHGQRGVGDGTISWGLENDDDMTLTHWTGMIIGPPRTPYENRMYSLKI 134
P RL+ + + Q G +S D+ +T W +I GP TP+E+ + L +
Sbjct: 2 TTPSRRRLMRDFKKLQEDPPAG-VSGAPTEDNILT---WEAIIFGPQETPFEDGTFKLSL 57
Query: 135 ECGPRYPDEPPQCRFVSRI 153
E YP++PP +F+S++
Sbjct: 58 EFTEEYPNKPPTVKFISKM 76
>pdb|2YHO|B Chain B, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
pdb|2YHO|D Chain D, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
pdb|2YHO|F Chain F, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
pdb|2YHO|H Chain H, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
Length = 149
Score = 44.3 bits (103), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 43/89 (48%), Gaps = 4/89 (4%)
Query: 81 RLLEELEHGQRGVGDGTISWGLENDDDMTLTHWTGMIIGPPRTPYENRMYSLKIECGPRY 140
R+ +EL QR S G DD L HW I+GPP + Y+ ++ L + Y
Sbjct: 7 RIQKELSDLQRDPP-AHCSAGPVGDD---LFHWQATIMGPPDSAYQGGVFFLTVHFPTDY 62
Query: 141 PDEPPQCRFVSRINMTCINNTSGIVVVIM 169
P +PP+ F ++I IN+ I + I+
Sbjct: 63 PFKPPKIAFTTKIYHPNINSNGSICLDIL 91
>pdb|2C4P|A Chain A, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5a
pdb|2C4P|B Chain B, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5a
Length = 165
Score = 44.3 bits (103), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 48/102 (47%), Gaps = 8/102 (7%)
Query: 72 LFSVVPRNF----RLLEELEHGQRGVGDGTISWGLENDDDMTLTHWTGMIIGPPRTPYEN 127
+ +VPR R+ +EL QR S G DD L HW I+GPP + Y+
Sbjct: 10 MSGLVPRGSMALKRIQKELSDLQRD-PPAHCSAGPVGDD---LFHWQATIMGPPDSAYQG 65
Query: 128 RMYSLKIECGPRYPDEPPQCRFVSRINMTCINNTSGIVVVIM 169
++ L + YP +PP+ F ++I IN+ I + I+
Sbjct: 66 GVFFLTVHFPTDYPFKPPKIAFTTKIYHPNINSNGSICLDIL 107
>pdb|3OJ4|A Chain A, Crystal Structure Of The A20 Znf4, Ubiquitin And Ubch5a
Complex
pdb|3OJ4|D Chain D, Crystal Structure Of The A20 Znf4, Ubiquitin And Ubch5a
Complex
pdb|3PTF|A Chain A, X-Ray Structure Of The Non-Covalent Complex Between Ubch5a
And Ubiquitin
pdb|3PTF|B Chain B, X-Ray Structure Of The Non-Covalent Complex Between Ubch5a
And Ubiquitin
Length = 153
Score = 44.3 bits (103), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 43/89 (48%), Gaps = 4/89 (4%)
Query: 81 RLLEELEHGQRGVGDGTISWGLENDDDMTLTHWTGMIIGPPRTPYENRMYSLKIECGPRY 140
R+ +EL QR S G DD L HW I+GPP + Y+ ++ L + Y
Sbjct: 11 RIQKELSDLQRDPP-AHCSAGPVGDD---LFHWQATIMGPPDSAYQGGVFFLTVHFPTDY 66
Query: 141 PDEPPQCRFVSRINMTCINNTSGIVVVIM 169
P +PP+ F ++I IN+ I + I+
Sbjct: 67 PFKPPKIAFTTKIYHPNINSNGSICLDIL 95
>pdb|4II2|C Chain C, Crystal Structure Of Ubiquitin Activating Enzyme 1 (uba1)
In Complex With The Ub E2 Ubc4, Ubiquitin, And Atp/mg
Length = 163
Score = 43.9 bits (102), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 35/71 (49%), Gaps = 3/71 (4%)
Query: 99 SWGLENDDDMTLTHWTGMIIGPPRTPYENRMYSLKIECGPRYPDEPPQCRFVSRINMTCI 158
S G DD L HW I+GP +PY ++ L I YP +PP+ F +RI I
Sbjct: 22 SAGPVGDD---LFHWQATIMGPADSPYAGGVFFLSIHFPTDYPFKPPKVNFTTRIYHPNI 78
Query: 159 NNTSGIVVVIM 169
N+ I + I+
Sbjct: 79 NSNGSICLDIL 89
>pdb|4AUQ|A Chain A, Structure Of Birc7-Ubch5b-Ub Complex.
pdb|4AUQ|D Chain D, Structure Of Birc7-Ubch5b-Ub Complex
Length = 147
Score = 43.9 bits (102), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 34/64 (53%), Gaps = 2/64 (3%)
Query: 106 DDMTLTHWTGMIIGPPRTPYENRMYSLKIECGPRYPDEPPQCRFVSRINMTCINNTSGIV 165
DDM HW I+GP +PY+ ++ L I YP +PP+ F +RI IN+ I
Sbjct: 28 DDMF--HWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPAINSNGSIS 85
Query: 166 VVIM 169
+ I+
Sbjct: 86 LDIL 89
>pdb|2Y9P|A Chain A, Pex4p-Pex22p Mutant Ii Structure
Length = 172
Score = 43.5 bits (101), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 41/88 (46%), Gaps = 5/88 (5%)
Query: 70 LKLFSVVPRNFRLLEELEHGQRGVGDGTISWGLENDDDMTLTHWTGMIIGPPRTPYENRM 129
+K + V+ + + + + RG+ + L D+ L+ W +I GP TPYEN
Sbjct: 12 VKEYKVILKTLASDDPIANPYRGIIES-----LNPIDETDLSKWEAIISGPSDTPYENHQ 66
Query: 130 YSLKIECGPRYPDEPPQCRFVSRINMTC 157
+ + IE YP PP+ F+ + C
Sbjct: 67 FRILIEVPSSYPMNPPKISFMQNNILHC 94
>pdb|2Y9M|A Chain A, Pex4p-Pex22p Structure
Length = 172
Score = 43.1 bits (100), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 41/88 (46%), Gaps = 5/88 (5%)
Query: 70 LKLFSVVPRNFRLLEELEHGQRGVGDGTISWGLENDDDMTLTHWTGMIIGPPRTPYENRM 129
+K + V+ + + + + RG+ + L D+ L+ W +I GP TPYEN
Sbjct: 12 VKEYKVILKTLASDDPIANPYRGIIES-----LNPIDETDLSKWEAIISGPSDTPYENHQ 66
Query: 130 YSLKIECGPRYPDEPPQCRFVSRINMTC 157
+ + IE YP PP+ F+ + C
Sbjct: 67 FRILIEVPSSYPMNPPKISFMQNNILHC 94
>pdb|1TTE|A Chain A, The Structure Of A Class Ii Ubiquitin-Conjugating Enzyme,
Ubc1
Length = 215
Score = 43.1 bits (100), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 31/54 (57%)
Query: 112 HWTGMIIGPPRTPYENRMYSLKIECGPRYPDEPPQCRFVSRINMTCINNTSGIV 165
H G +GPP TPYE + + IE YP +PP+ +F +++ I++ +G +
Sbjct: 34 HLKGTFLGPPGTPYEGGKFVVDIEVPMEYPFKPPKMQFDTKVYHPNISSVTGAI 87
>pdb|1QCQ|A Chain A, Ubiquitin Conjugating Enzyme
Length = 148
Score = 43.1 bits (100), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 42/89 (47%), Gaps = 4/89 (4%)
Query: 81 RLLEELEHGQRGVGDGTISWGLENDDDMTLTHWTGMIIGPPRTPYENRMYSLKIECGPRY 140
R+ +EL +R + S G DD L HW I+GP +PY ++ L I Y
Sbjct: 6 RIAKELSDLERDPP-TSCSAGPVGDD---LYHWQASIMGPADSPYAGGVFFLSIHFPTDY 61
Query: 141 PDEPPQCRFVSRINMTCINNTSGIVVVIM 169
P +PP+ F ++I IN I + I+
Sbjct: 62 PFKPPKISFTTKIYHPNINANGNICLDIL 90
>pdb|2Y9O|A Chain A, Pex4p-Pex22p Mutant I Structure
Length = 172
Score = 43.1 bits (100), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 25/45 (55%)
Query: 106 DDMTLTHWTGMIIGPPRTPYENRMYSLKIECGPRYPDEPPQCRFV 150
D+ L+ W +I GP TPYEN + + IE YP PP+ F+
Sbjct: 43 DETDLSKWEAIISGPSDTPYENHQFRILIEVPSSYPMNPPKISFM 87
>pdb|3A33|A Chain A, Ubch5b~ubiquitin Conjugate
Length = 150
Score = 42.7 bits (99), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 34/64 (53%), Gaps = 2/64 (3%)
Query: 106 DDMTLTHWTGMIIGPPRTPYENRMYSLKIECGPRYPDEPPQCRFVSRINMTCINNTSGIV 165
DDM HW I+GP +PY+ ++ L I YP +PP+ F +RI IN+ I
Sbjct: 31 DDMF--HWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSIS 88
Query: 166 VVIM 169
+ I+
Sbjct: 89 LDIL 92
>pdb|3JVZ|A Chain A, E2~ubiquitin-Hect
pdb|3JVZ|B Chain B, E2~ubiquitin-Hect
pdb|3JW0|A Chain A, E2~ubiquitin-Hect
pdb|3JW0|B Chain B, E2~ubiquitin-Hect
Length = 146
Score = 42.7 bits (99), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 34/64 (53%), Gaps = 2/64 (3%)
Query: 106 DDMTLTHWTGMIIGPPRTPYENRMYSLKIECGPRYPDEPPQCRFVSRINMTCINNTSGIV 165
DDM HW I+GP +PY+ ++ L I YP +PP+ F +RI IN+ I
Sbjct: 27 DDMF--HWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSIS 84
Query: 166 VVIM 169
+ I+
Sbjct: 85 LDIL 88
>pdb|1UR6|A Chain A, Nmr Based Structural Model Of The Ubch5b-Cnot4 Complex
pdb|1W4U|A Chain A, Nmr Solution Structure Of The Ubiquitin Conjugating Enzyme
Ubch5b
pdb|4A49|B Chain B, Structure Of Phosphotyr371-C-Cbl-Ubch5b Complex
pdb|4A4B|C Chain C, Structure Of Modified Phosphotyr371-C-Cbl-Ubch5b-Zap-70
Complex
pdb|4A4C|C Chain C, Structure Of Phosphotyr371-C-Cbl-Ubch5b-Zap-70 Complex
Length = 147
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 34/64 (53%), Gaps = 2/64 (3%)
Query: 106 DDMTLTHWTGMIIGPPRTPYENRMYSLKIECGPRYPDEPPQCRFVSRINMTCINNTSGIV 165
DDM HW I+GP +PY+ ++ L I YP +PP+ F +RI IN+ I
Sbjct: 28 DDMF--HWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSIC 85
Query: 166 VVIM 169
+ I+
Sbjct: 86 LDIL 89
>pdb|2ESQ|A Chain A, Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b Mutant
Ser94gly
Length = 149
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 34/64 (53%), Gaps = 2/64 (3%)
Query: 106 DDMTLTHWTGMIIGPPRTPYENRMYSLKIECGPRYPDEPPQCRFVSRINMTCINNTSGIV 165
DDM HW I+GP +PY+ ++ L I YP +PP+ F +RI IN+ I
Sbjct: 30 DDMF--HWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSIC 87
Query: 166 VVIM 169
+ I+
Sbjct: 88 LDIL 91
>pdb|2ESK|A Chain A, Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b, Wild-Type
Length = 149
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 34/64 (53%), Gaps = 2/64 (3%)
Query: 106 DDMTLTHWTGMIIGPPRTPYENRMYSLKIECGPRYPDEPPQCRFVSRINMTCINNTSGIV 165
DDM HW I+GP +PY+ ++ L I YP +PP+ F +RI IN+ I
Sbjct: 30 DDMF--HWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSIC 87
Query: 166 VVIM 169
+ I+
Sbjct: 88 LDIL 91
>pdb|3EB6|B Chain B, Structure Of The Ciap2 Ring Domain Bound To Ubch5b
Length = 149
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 34/64 (53%), Gaps = 2/64 (3%)
Query: 106 DDMTLTHWTGMIIGPPRTPYENRMYSLKIECGPRYPDEPPQCRFVSRINMTCINNTSGIV 165
DDM HW I+GP +PY+ ++ L I YP +PP+ F +RI IN+ I
Sbjct: 30 DDMF--HWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSIC 87
Query: 166 VVIM 169
+ I+
Sbjct: 88 LDIL 91
>pdb|2C4O|A Chain A, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
pdb|2CLW|A Chain A, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
Length = 165
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 34/64 (53%), Gaps = 2/64 (3%)
Query: 106 DDMTLTHWTGMIIGPPRTPYENRMYSLKIECGPRYPDEPPQCRFVSRINMTCINNTSGIV 165
DDM HW I+GP +PY+ ++ L I YP +PP+ F +RI IN+ I
Sbjct: 46 DDMF--HWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSIX 103
Query: 166 VVIM 169
+ I+
Sbjct: 104 LDIL 107
>pdb|3TGD|A Chain A, Crystal Structure Of The Human Ubiquitin-Conjugating
Enzyme (E2) Ubch5b
Length = 152
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 34/64 (53%), Gaps = 2/64 (3%)
Query: 106 DDMTLTHWTGMIIGPPRTPYENRMYSLKIECGPRYPDEPPQCRFVSRINMTCINNTSGIV 165
DDM HW I+GP +PY+ ++ L I YP +PP+ F +RI IN+ I
Sbjct: 33 DDMF--HWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSIC 90
Query: 166 VVIM 169
+ I+
Sbjct: 91 LDIL 94
>pdb|3L1Y|A Chain A, Crystal Structure Of Human Ubc4 E2 Conjugating Enzyme
Length = 157
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 34/64 (53%), Gaps = 2/64 (3%)
Query: 106 DDMTLTHWTGMIIGPPRTPYENRMYSLKIECGPRYPDEPPQCRFVSRINMTCINNTSGIV 165
DDM HW I+GP +PY+ ++ L I YP +PP+ F +RI IN+ I
Sbjct: 38 DDMF--HWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSIC 95
Query: 166 VVIM 169
+ I+
Sbjct: 96 LDIL 99
>pdb|3UGB|A Chain A, Ubch5c~ubiquitin Conjugate
Length = 147
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 34/64 (53%), Gaps = 2/64 (3%)
Query: 106 DDMTLTHWTGMIIGPPRTPYENRMYSLKIECGPRYPDEPPQCRFVSRINMTCINNTSGIV 165
DDM HW I+GP +PY+ ++ L I YP +PP+ F +RI IN+ I
Sbjct: 28 DDMF--HWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSIS 85
Query: 166 VVIM 169
+ I+
Sbjct: 86 LDIL 89
>pdb|2FUH|A Chain A, Solution Structure Of The Ubch5cUB NON-Covalent Complex
Length = 146
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 34/64 (53%), Gaps = 2/64 (3%)
Query: 106 DDMTLTHWTGMIIGPPRTPYENRMYSLKIECGPRYPDEPPQCRFVSRINMTCINNTSGIV 165
DDM HW I+GP +PY+ ++ L I YP +PP+ F +RI IN+ I
Sbjct: 27 DDMF--HWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSIC 84
Query: 166 VVIM 169
+ I+
Sbjct: 85 LDIL 88
>pdb|2AYV|A Chain A, Crystal Structure Of A Putative Ubiquitin-Conjugating
Enzyme E2 From Toxoplasma Gondii
Length = 166
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 33/64 (51%), Gaps = 2/64 (3%)
Query: 106 DDMTLTHWTGMIIGPPRTPYENRMYSLKIECGPRYPDEPPQCRFVSRINMTCINNTSGIV 165
DDM HW I+GP +PY ++ L I YP +PP+ F ++I IN+ I
Sbjct: 48 DDMF--HWQATIMGPEDSPYSGGVFFLNIHFPSDYPFKPPKVNFTTKIYHPNINSQGAIC 105
Query: 166 VVIM 169
+ I+
Sbjct: 106 LDIL 109
>pdb|3RPG|A Chain A, Bmi1RING1B-Ubch5c Complex Structure
Length = 149
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 34/64 (53%), Gaps = 2/64 (3%)
Query: 106 DDMTLTHWTGMIIGPPRTPYENRMYSLKIECGPRYPDEPPQCRFVSRINMTCINNTSGIV 165
DDM HW I+GP +PY+ ++ L I YP +PP+ F +RI IN+ I
Sbjct: 30 DDMF--HWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSIC 87
Query: 166 VVIM 169
+ I+
Sbjct: 88 LDIL 91
>pdb|1X23|A Chain A, Crystal Structure Of Ubch5c
pdb|1X23|B Chain B, Crystal Structure Of Ubch5c
pdb|1X23|C Chain C, Crystal Structure Of Ubch5c
pdb|1X23|D Chain D, Crystal Structure Of Ubch5c
Length = 155
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 34/64 (53%), Gaps = 2/64 (3%)
Query: 106 DDMTLTHWTGMIIGPPRTPYENRMYSLKIECGPRYPDEPPQCRFVSRINMTCINNTSGIV 165
DDM HW I+GP +PY+ ++ L I YP +PP+ F +RI IN+ I
Sbjct: 36 DDMF--HWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSIC 93
Query: 166 VVIM 169
+ I+
Sbjct: 94 LDIL 97
>pdb|3L1Z|A Chain A, Crystal Structure Of The U-Box Domain Of Human E4b
Ubiquitin Ligase In Complex With Ubch5c E2 Ubiquitin
Conjugating Enzyme
Length = 157
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 34/64 (53%), Gaps = 2/64 (3%)
Query: 106 DDMTLTHWTGMIIGPPRTPYENRMYSLKIECGPRYPDEPPQCRFVSRINMTCINNTSGIV 165
DDM HW I+GP +PY+ ++ L I YP +PP+ F +RI IN+ I
Sbjct: 38 DDMF--HWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSIC 95
Query: 166 VVIM 169
+ I+
Sbjct: 96 LDIL 99
>pdb|2C4O|B Chain B, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
pdb|2C4O|C Chain C, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
pdb|2C4O|D Chain D, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
pdb|2CLW|B Chain B, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
pdb|2CLW|C Chain C, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
pdb|2CLW|D Chain D, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
Length = 165
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 34/64 (53%), Gaps = 2/64 (3%)
Query: 106 DDMTLTHWTGMIIGPPRTPYENRMYSLKIECGPRYPDEPPQCRFVSRINMTCINNTSGIV 165
DDM HW I+GP +PY+ ++ L I YP +PP+ F +RI IN+ I
Sbjct: 46 DDMF--HWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSIC 103
Query: 166 VVIM 169
+ I+
Sbjct: 104 LDIL 107
>pdb|4AP4|B Chain B, Rnf4 - Ubch5a - Ubiquitin Heterotrimeric Complex
pdb|4AP4|E Chain E, Rnf4 - Ubch5a - Ubiquitin Heterotrimeric Complex
Length = 153
Score = 41.6 bits (96), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 32/60 (53%)
Query: 110 LTHWTGMIIGPPRTPYENRMYSLKIECGPRYPDEPPQCRFVSRINMTCINNTSGIVVVIM 169
L HW I+GPP + Y+ ++ L + YP +PP+ F ++I IN+ I + I+
Sbjct: 36 LFHWQATIMGPPDSAYQGGVFFLTVHFPTDYPFKPPKIAFTTKIYHPNINSNGSIKLDIL 95
>pdb|2AWF|A Chain A, Structure Of Human Ubiquitin-Conjugating Enzyme E2 G1
Length = 172
Score = 41.2 bits (95), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 32/64 (50%)
Query: 106 DDMTLTHWTGMIIGPPRTPYENRMYSLKIECGPRYPDEPPQCRFVSRINMTCINNTSGIV 165
DD L W +IIGPP T YE ++ + YP PP+ +F++ I ++ +
Sbjct: 43 DDNDLYRWEVLIIGPPDTLYEGGVFKAHLTFPKDYPLRPPKMKFITEIWHPNVDKNGDVC 102
Query: 166 VVIM 169
+ I+
Sbjct: 103 ISIL 106
>pdb|2ESP|A Chain A, Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b Mutant
Ile88ala
Length = 149
Score = 41.2 bits (95), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 32/61 (52%), Gaps = 2/61 (3%)
Query: 106 DDMTLTHWTGMIIGPPRTPYENRMYSLKIECGPRYPDEPPQCRFVSRINMTCINNTSGIV 165
DDM HW I+GP +PY+ ++ L I YP +PP+ F +RI IN+ I
Sbjct: 30 DDMF--HWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSIC 87
Query: 166 V 166
+
Sbjct: 88 L 88
>pdb|2ESO|A Chain A, Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b Mutant
Ile37ala
Length = 149
Score = 40.8 bits (94), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 33/64 (51%), Gaps = 2/64 (3%)
Query: 106 DDMTLTHWTGMIIGPPRTPYENRMYSLKIECGPRYPDEPPQCRFVSRINMTCINNTSGIV 165
DDM HW +GP +PY+ ++ L I YP +PP+ F +RI IN+ I
Sbjct: 30 DDMF--HWQATAMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSIC 87
Query: 166 VVIM 169
+ I+
Sbjct: 88 LDIL 91
>pdb|2UCZ|A Chain A, Ubiquitin Conjugating Enzyme (Ubc7) From Saccharomyces
Cerevisiae
Length = 165
Score = 40.8 bits (94), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 42/73 (57%), Gaps = 3/73 (4%)
Query: 81 RLLEELEHGQRGVGDGTISWGLENDDDMTLTHWTGMIIGPPRTPYENRMYSLKIECGPRY 140
RLL+EL+ + G ++ G ++++++ + W +I GPP TPY + +++ K+E Y
Sbjct: 8 RLLKELQQLIKDSPPGIVA-GPKSENNIFI--WDCLIQGPPDTPYADGVFNAKLEFPKDY 64
Query: 141 PDEPPQCRFVSRI 153
P PP+ F I
Sbjct: 65 PLSPPKLTFTPSI 77
>pdb|1Y6L|A Chain A, Human Ubiquitin Conjugating Enzyme E2e2
pdb|1Y6L|B Chain B, Human Ubiquitin Conjugating Enzyme E2e2
pdb|1Y6L|C Chain C, Human Ubiquitin Conjugating Enzyme E2e2
Length = 149
Score = 40.8 bits (94), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 31/58 (53%)
Query: 112 HWTGMIIGPPRTPYENRMYSLKIECGPRYPDEPPQCRFVSRINMTCINNTSGIVVVIM 169
W I+GPP + YE ++ L I P YP +PP+ F +RI IN+ I + I+
Sbjct: 34 EWRSTILGPPGSVYEGGVFFLDITFSPDYPFKPPKVTFRTRIYHCNINSQGVICLDIL 91
>pdb|3BZH|A Chain A, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme E2
E1
Length = 194
Score = 40.8 bits (94), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 49/99 (49%), Gaps = 10/99 (10%)
Query: 78 RNFRLLE-ELEHGQRGVGDGTI------SWGLENDDDMTLTHWTGMIIGPPRTPYENRMY 130
+N +LL + Q+ + D T+ S G + D+ + W I+GPP + YE ++
Sbjct: 41 KNSKLLSTSAKRIQKELADITLDPPPNCSAGPKGDN---IYEWRSTILGPPGSVYEGGVF 97
Query: 131 SLKIECGPRYPDEPPQCRFVSRINMTCINNTSGIVVVIM 169
L I P YP +PP+ F +RI IN+ I + I+
Sbjct: 98 FLDITFTPEYPFKPPKVTFRTRIYHCNINSQGVICLDIL 136
>pdb|3E95|A Chain A, Crystal Structure Of The Plasmodium Falciparum Ubiquitin
Conjugating Enzyme Complex, Pfubc13-Pfuev1a
pdb|3E95|B Chain B, Crystal Structure Of The Plasmodium Falciparum Ubiquitin
Conjugating Enzyme Complex, Pfubc13-Pfuev1a
Length = 151
Score = 40.8 bits (94), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 33/58 (56%)
Query: 112 HWTGMIIGPPRTPYENRMYSLKIECGPRYPDEPPQCRFVSRINMTCINNTSGIVVVIM 169
H+ +I GP TPYE Y L++ +YP EPP+ RF+++I I+ I + I+
Sbjct: 32 HFNILINGPDGTPYEGGTYKLELFLPEQYPMEPPKVRFLTKIYHPNIDKLGRICLDIL 89
>pdb|2R0J|A Chain A, Crystal Structure Of The Putative Ubiquitin Conjugating
Enzyme, Pfe1350c, From Plasmodium Falciparum
Length = 149
Score = 40.8 bits (94), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 33/58 (56%)
Query: 112 HWTGMIIGPPRTPYENRMYSLKIECGPRYPDEPPQCRFVSRINMTCINNTSGIVVVIM 169
H+ +I GP TPYE Y L++ +YP EPP+ RF+++I I+ I + I+
Sbjct: 32 HFNILINGPDGTPYEGGTYKLELFLPEQYPMEPPKVRFLTKIYHPNIDKLGRICLDIL 89
>pdb|1YH2|A Chain A, Ubiquitin-Conjugating Enzyme Hspc150
Length = 169
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 40/92 (43%), Gaps = 4/92 (4%)
Query: 78 RNFRLLEELEHGQRGVGDGTISWGLENDDDMTLTHWTGMIIGPPRTPYENRMYSLKIECG 137
R RL EL G W D + I+G TPYE ++ L++
Sbjct: 5 RASRLKRELHMLATEPPPGITCW----QDKDQMDDLRAQILGGANTPYEKGVFKLEVIIP 60
Query: 138 PRYPDEPPQCRFVSRINMTCINNTSGIVVVIM 169
RYP EPPQ RF++ I I++ I + ++
Sbjct: 61 ERYPFEPPQIRFLTPIYHPNIDSAGRICLDVL 92
>pdb|3RCZ|B Chain B, Rad60 Sld2 Ubc9 Complex
Length = 163
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 25/47 (53%)
Query: 104 NDDDMTLTHWTGMIIGPPRTPYENRMYSLKIECGPRYPDEPPQCRFV 150
+D + L +W I G P+T +E +Y L + YP PP+CRF
Sbjct: 38 SDGGLDLMNWKVGIPGKPKTSWEGGLYKLTMAFPEEYPTRPPKCRFT 84
>pdb|3RZ3|A Chain A, Human Cdc34 E2 In Complex With Cc0651 Inhibitor
pdb|3RZ3|B Chain B, Human Cdc34 E2 In Complex With Cc0651 Inhibitor
pdb|3RZ3|C Chain C, Human Cdc34 E2 In Complex With Cc0651 Inhibitor
pdb|3RZ3|D Chain D, Human Cdc34 E2 In Complex With Cc0651 Inhibitor
Length = 183
Score = 38.1 bits (87), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 36/79 (45%), Gaps = 10/79 (12%)
Query: 106 DDMTLTHWTGMIIGPPRTPYENRMYSLKIECGPRYPDEPPQCRFVSRINMTCINNTSGIV 165
D+ L +W I GPP T YE + +++ YP PP RF++++ I T +
Sbjct: 33 DEGDLYNWEVAIFGPPNTYYEGGYFKARLKFPIDYPYSPPAFRFLTKMWHPNIYETGDVC 92
Query: 166 VVIMFWVMIEAKATHYPVD 184
+ I+ H PVD
Sbjct: 93 ISIL----------HPPVD 101
>pdb|2OB4|A Chain A, Human Ubiquitin-Conjugating Enzyme Cdc34
Length = 180
Score = 38.1 bits (87), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 36/79 (45%), Gaps = 10/79 (12%)
Query: 106 DDMTLTHWTGMIIGPPRTPYENRMYSLKIECGPRYPDEPPQCRFVSRINMTCINNTSGIV 165
D+ L +W I GPP T YE + +++ YP PP RF++++ I T +
Sbjct: 30 DEGDLYNWEVAIFGPPNTYYEGGYFKARLKFPIDYPYSPPAFRFLTKMWHPNIYETGDVC 89
Query: 166 VVIMFWVMIEAKATHYPVD 184
+ I+ H PVD
Sbjct: 90 ISIL----------HPPVD 98
>pdb|1KPS|A Chain A, Structural Basis For E2-Mediated Sumo Conjugation Revealed
By A Complex Between Ubiquitin Conjugating Enzyme Ubc9
And Rangap1
pdb|1KPS|C Chain C, Structural Basis For E2-Mediated Sumo Conjugation Revealed
By A Complex Between Ubiquitin Conjugating Enzyme Ubc9
And Rangap1
Length = 159
Score = 37.7 bits (86), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 36/70 (51%), Gaps = 1/70 (1%)
Query: 81 RLLEELEHGQRGVGDGTISWGLEN-DDDMTLTHWTGMIIGPPRTPYENRMYSLKIECGPR 139
RL +E + ++ G ++ +N D M L +W I G TP+E ++ L++
Sbjct: 9 RLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKDD 68
Query: 140 YPDEPPQCRF 149
YP PP+C+F
Sbjct: 69 YPSSPPKCKF 78
>pdb|2GRQ|A Chain A, Crystal Structure Of Human Rangap1-Ubc9-D127a
Length = 161
Score = 37.7 bits (86), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 36/70 (51%), Gaps = 1/70 (1%)
Query: 81 RLLEELEHGQRGVGDGTISWGLEN-DDDMTLTHWTGMIIGPPRTPYENRMYSLKIECGPR 139
RL +E + ++ G ++ +N D M L +W I G TP+E ++ L++
Sbjct: 11 RLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKDD 70
Query: 140 YPDEPPQCRF 149
YP PP+C+F
Sbjct: 71 YPSSPPKCKF 80
>pdb|1U9A|A Chain A, Human Ubiquitin-Conjugating Enzyme Ubc9
pdb|1U9B|A Chain A, MurineHUMAN UBIQUITIN-Conjugating Enzyme Ubc9
Length = 160
Score = 37.7 bits (86), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 36/70 (51%), Gaps = 1/70 (1%)
Query: 81 RLLEELEHGQRGVGDGTISWGLEN-DDDMTLTHWTGMIIGPPRTPYENRMYSLKIECGPR 139
RL +E + ++ G ++ +N D M L +W I G TP+E ++ L++
Sbjct: 10 RLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKDD 69
Query: 140 YPDEPPQCRF 149
YP PP+C+F
Sbjct: 70 YPSSPPKCKF 79
>pdb|2GRR|A Chain A, Crystal Structure Of Human Rangap1-Ubc9-D127s
Length = 161
Score = 37.7 bits (86), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 36/70 (51%), Gaps = 1/70 (1%)
Query: 81 RLLEELEHGQRGVGDGTISWGLEN-DDDMTLTHWTGMIIGPPRTPYENRMYSLKIECGPR 139
RL +E + ++ G ++ +N D M L +W I G TP+E ++ L++
Sbjct: 11 RLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKDD 70
Query: 140 YPDEPPQCRF 149
YP PP+C+F
Sbjct: 71 YPSSPPKCKF 80
>pdb|4FH1|A Chain A, S. Cerevisiae Ubc13-N79a
Length = 153
Score = 37.7 bits (86), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 46/89 (51%), Gaps = 4/89 (4%)
Query: 81 RLLEELEHGQRGVGDGTISWGLENDDDMTLTHWTGMIIGPPRTPYENRMYSLKIECGPRY 140
R+++E E + V D E DD L ++ I GP ++PYE+ ++ L++ Y
Sbjct: 7 RIIKETE---KLVSDPVPGITAEPHDD-NLRYFQVTIEGPEQSPYEDGIFELELYLPDDY 62
Query: 141 PDEPPQCRFVSRINMTCINNTSGIVVVIM 169
P E P+ RF+++I I+ I + ++
Sbjct: 63 PMEAPKVRFLTKIYHPAIDRLGRISLDVL 91
>pdb|1Z5S|A Chain A, Crystal Structure Of A Complex Between Ubc9, Sumo-1,
Rangap1 And Nup358RANBP2
pdb|2PX9|B Chain B, The Intrinsic Affinity Between E2 And The Cys Domain Of E1
In Ubiquitin-Like Modifications
pdb|2VRR|A Chain A, Structure Of Sumo Modified Ubc9
pdb|2XWU|A Chain A, Crystal Structure Of Importin 13 - Ubc9 Complex
pdb|3UIN|A Chain A, Complex Between Human Rangap1-Sumo2, Ubc9 And The Ir1
Domain From Ranbp2
Length = 158
Score = 37.7 bits (86), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 36/70 (51%), Gaps = 1/70 (1%)
Query: 81 RLLEELEHGQRGVGDGTISWGLEN-DDDMTLTHWTGMIIGPPRTPYENRMYSLKIECGPR 139
RL +E + ++ G ++ +N D M L +W I G TP+E ++ L++
Sbjct: 8 RLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKDD 67
Query: 140 YPDEPPQCRF 149
YP PP+C+F
Sbjct: 68 YPSSPPKCKF 77
>pdb|2GRO|A Chain A, Crystal Structure Of Human Rangap1-Ubc9-N85q
Length = 161
Score = 37.7 bits (86), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 36/70 (51%), Gaps = 1/70 (1%)
Query: 81 RLLEELEHGQRGVGDGTISWGLEN-DDDMTLTHWTGMIIGPPRTPYENRMYSLKIECGPR 139
RL +E + ++ G ++ +N D M L +W I G TP+E ++ L++
Sbjct: 11 RLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKDD 70
Query: 140 YPDEPPQCRF 149
YP PP+C+F
Sbjct: 71 YPSSPPKCKF 80
>pdb|2GRN|A Chain A, Crystal Structure Of Human Rangap1-Ubc9
pdb|2PE6|A Chain A, Non-Covalent Complex Between Human Sumo-1 And Human Ubc9
Length = 161
Score = 37.7 bits (86), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 36/70 (51%), Gaps = 1/70 (1%)
Query: 81 RLLEELEHGQRGVGDGTISWGLEN-DDDMTLTHWTGMIIGPPRTPYENRMYSLKIECGPR 139
RL +E + ++ G ++ +N D M L +W I G TP+E ++ L++
Sbjct: 11 RLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKDD 70
Query: 140 YPDEPPQCRF 149
YP PP+C+F
Sbjct: 71 YPSSPPKCKF 80
>pdb|2UYZ|A Chain A, Non-Covalent Complex Between Ubc9 And Sumo1
Length = 158
Score = 37.4 bits (85), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 36/70 (51%), Gaps = 1/70 (1%)
Query: 81 RLLEELEHGQRGVGDGTISWGLEN-DDDMTLTHWTGMIIGPPRTPYENRMYSLKIECGPR 139
RL +E + ++ G ++ +N D M L +W I G TP+E ++ L++
Sbjct: 8 RLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKDD 67
Query: 140 YPDEPPQCRF 149
YP PP+C+F
Sbjct: 68 YPSSPPKCKF 77
>pdb|2O25|C Chain C, Ubiquitin-Conjugating Enzyme E2-25 Kda Complexed With
Sumo-1- Conjugating Enzyme Ubc9
pdb|2O25|D Chain D, Ubiquitin-Conjugating Enzyme E2-25 Kda Complexed With
Sumo-1- Conjugating Enzyme Ubc9
pdb|1A3S|A Chain A, Human Ubc9
Length = 160
Score = 37.4 bits (85), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 36/70 (51%), Gaps = 1/70 (1%)
Query: 81 RLLEELEHGQRGVGDGTISWGLEN-DDDMTLTHWTGMIIGPPRTPYENRMYSLKIECGPR 139
RL +E + ++ G ++ +N D M L +W I G TP+E ++ L++
Sbjct: 10 RLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKDD 69
Query: 140 YPDEPPQCRF 149
YP PP+C+F
Sbjct: 70 YPSSPPKCKF 79
>pdb|2GRP|A Chain A, Crystal Structure Of Human Rangap1-Ubc9-Y87a
Length = 161
Score = 37.4 bits (85), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 36/70 (51%), Gaps = 1/70 (1%)
Query: 81 RLLEELEHGQRGVGDGTISWGLEN-DDDMTLTHWTGMIIGPPRTPYENRMYSLKIECGPR 139
RL +E + ++ G ++ +N D M L +W I G TP+E ++ L++
Sbjct: 11 RLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKDD 70
Query: 140 YPDEPPQCRF 149
YP PP+C+F
Sbjct: 71 YPSSPPKCKF 80
>pdb|2KJH|A Chain A, Nmr Based Structural Model Of The Ubch8-Ubiquitin Complex
Length = 152
Score = 37.4 bits (85), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 22/91 (24%), Positives = 45/91 (49%), Gaps = 4/91 (4%)
Query: 79 NFRLLEELEHGQRGVGDGTISWGLENDDDMTLTHWTGMIIGPPRTPYENRMYSLKIECGP 138
+ R+++ELE Q+ + DD + W +++ P + PY + ++L+I P
Sbjct: 3 SMRVVKELEDLQKKPPPYLRNLS---SDDANVLVWHALLL-PDQPPYHLKAFNLRISFPP 58
Query: 139 RYPDEPPQCRFVSRINMTCINNTSGIVVVIM 169
YP +PP +F ++I ++ I + I+
Sbjct: 59 EYPFKPPMIKFTTKIYHPNVDENGQICLPII 89
>pdb|1WZV|A Chain A, Crystal Structure Of Ubch8
pdb|1WZV|B Chain B, Crystal Structure Of Ubch8
pdb|1WZW|A Chain A, Crystal Structure Of Ubch8
Length = 155
Score = 37.4 bits (85), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 22/91 (24%), Positives = 45/91 (49%), Gaps = 4/91 (4%)
Query: 79 NFRLLEELEHGQRGVGDGTISWGLENDDDMTLTHWTGMIIGPPRTPYENRMYSLKIECGP 138
+ R+++ELE Q+ + DD + W +++ P + PY + ++L+I P
Sbjct: 6 SMRVVKELEDLQKKPPPYLRNLS---SDDANVLVWHALLL-PDQPPYHLKAFNLRISFPP 61
Query: 139 RYPDEPPQCRFVSRINMTCINNTSGIVVVIM 169
YP +PP +F ++I ++ I + I+
Sbjct: 62 EYPFKPPMIKFTTKIYHPNVDENGQICLPII 92
>pdb|3UIO|A Chain A, Complex Between Human Rangap1-Sumo2, Ubc9 And The Ir1
Domain From Ranbp2 Containing Ir2 Motif Ii
pdb|3UIP|A Chain A, Complex Between Human Rangap1-Sumo1, Ubc9 And The Ir1
Domain From Ranbp2 Containing Ir2 Motif Ii
Length = 158
Score = 37.4 bits (85), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 36/70 (51%), Gaps = 1/70 (1%)
Query: 81 RLLEELEHGQRGVGDGTISWGLEN-DDDMTLTHWTGMIIGPPRTPYENRMYSLKIECGPR 139
RL +E + ++ G ++ +N D M L +W I G TP+E ++ L++
Sbjct: 8 RLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKDD 67
Query: 140 YPDEPPQCRF 149
YP PP+C+F
Sbjct: 68 YPSSPPKCKF 77
>pdb|3A4S|A Chain A, The Crystal Structure Of The Sld2:ubc9 Complex
pdb|3A4S|B Chain B, The Crystal Structure Of The Sld2:ubc9 Complex
Length = 163
Score = 37.4 bits (85), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 36/70 (51%), Gaps = 1/70 (1%)
Query: 81 RLLEELEHGQRGVGDGTISWGLEN-DDDMTLTHWTGMIIGPPRTPYENRMYSLKIECGPR 139
RL +E + ++ G ++ +N D M L +W I G TP+E ++ L++
Sbjct: 13 RLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKDD 72
Query: 140 YPDEPPQCRF 149
YP PP+C+F
Sbjct: 73 YPSSPPKCKF 82
>pdb|4GPR|A Chain A, Crystal Structure Of Ehubc5, A Ubiquitin Conjugating
Enzyme From Entamoeba Histolytica
Length = 151
Score = 37.0 bits (84), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 30/58 (51%)
Query: 112 HWTGMIIGPPRTPYENRMYSLKIECGPRYPDEPPQCRFVSRINMTCINNTSGIVVVIM 169
HWT I GP +PY+ ++ L + YP + P+ F++++ IN I + I+
Sbjct: 35 HWTATITGPDDSPYQGGLFFLDVHFPVDYPFKAPRVTFMTKVYHPNINKNGVICLDIL 92
>pdb|2GMI|A Chain A, Mms2UBC13~UBIQUITIN
Length = 152
Score = 36.6 bits (83), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 46/89 (51%), Gaps = 4/89 (4%)
Query: 81 RLLEELEHGQRGVGDGTISWGLENDDDMTLTHWTGMIIGPPRTPYENRMYSLKIECGPRY 140
R+++E E + V D E DD L ++ I GP ++PYE+ ++ L++ Y
Sbjct: 7 RIIKETE---KLVSDPVPGITAEPHDD-NLRYFQVTIEGPEQSPYEDGIFELELYLPDDY 62
Query: 141 PDEPPQCRFVSRINMTCINNTSGIVVVIM 169
P E P+ RF+++I I+ I + ++
Sbjct: 63 PMEAPKVRFLTKIYHPNIDRLGRISLDVL 91
>pdb|1ZDN|A Chain A, Ubiquitin-Conjugating Enzyme E2s
pdb|1ZDN|B Chain B, Ubiquitin-Conjugating Enzyme E2s
Length = 158
Score = 36.2 bits (82), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 34/66 (51%), Gaps = 2/66 (3%)
Query: 104 NDDDMTLTHWTGMIIGPPRTPYENRMYSLKIECGPRYPDEPPQCRFVSRINMTCINNTSG 163
N++D+T T I GP TPY ++ +K+ G +P PP+ F+++I +
Sbjct: 38 NEEDLTDLQVT--IEGPEGTPYAGGLFRMKLLLGKDFPASPPKGYFLTKIFHPNVGANGE 95
Query: 164 IVVVIM 169
I V ++
Sbjct: 96 ICVNVL 101
>pdb|1JBB|A Chain A, Ubiquitin Conjugating Enzyme, Ubc13
pdb|1JBB|B Chain B, Ubiquitin Conjugating Enzyme, Ubc13
Length = 153
Score = 36.2 bits (82), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 46/89 (51%), Gaps = 4/89 (4%)
Query: 81 RLLEELEHGQRGVGDGTISWGLENDDDMTLTHWTGMIIGPPRTPYENRMYSLKIECGPRY 140
R+++E E + V D E DD L ++ I GP ++PYE+ ++ L++ Y
Sbjct: 7 RIIKETE---KLVSDPVPGITAEPHDD-NLRYFQVTIEGPEQSPYEDGIFELELYLPDDY 62
Query: 141 PDEPPQCRFVSRINMTCINNTSGIVVVIM 169
P E P+ RF+++I I+ I + ++
Sbjct: 63 PMEAPKVRFLTKIYHPNIDRLGRICLDVL 91
>pdb|1JAT|A Chain A, Mms2UBC13 UBIQUITIN CONJUGATING ENZYME COMPLEX
Length = 155
Score = 36.2 bits (82), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 35/63 (55%)
Query: 107 DMTLTHWTGMIIGPPRTPYENRMYSLKIECGPRYPDEPPQCRFVSRINMTCINNTSGIVV 166
D L ++ I GP ++PYE+ ++ L++ YP E P+ RF+++I I+ I +
Sbjct: 31 DDNLRYFQVTIEGPEQSPYEDGIFELELYLPDDYPMEAPKVRFLTKIYHPNIDRLGRICL 90
Query: 167 VIM 169
++
Sbjct: 91 DVL 93
>pdb|1C4Z|D Chain D, Structure Of E6ap: Insights Into Ubiquitination Pathway
pdb|1FBV|C Chain C, Structure Of A Cbl-Ubch7 Complex: Ring Domain Function In
Ubiquitin-Protein Ligases
Length = 154
Score = 34.7 bits (78), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 22/89 (24%), Positives = 44/89 (49%), Gaps = 4/89 (4%)
Query: 81 RLLEELEHGQRGVGDGTISWGLENDDDMTLTHWTGMIIGPPRTPYENRMYSLKIECGPRY 140
RL++ELE ++ G ++ D+ L W G+I+ P PY+ + ++I Y
Sbjct: 6 RLMKELEEIRKC---GMKNFRNIQVDEANLLTWQGLIV-PDNPPYDKGAFRIEINFPAEY 61
Query: 141 PDEPPQCRFVSRINMTCINNTSGIVVVIM 169
P +PP+ F ++I I+ + + ++
Sbjct: 62 PFKPPKITFKTKIYHPNIDEKGQVCLPVI 90
>pdb|3SQV|C Chain C, Crystal Structure Of E. Coli O157:h7 E3 Ubiquitin Ligase,
Nlel, With A Human E2, Ubch7
pdb|3SQV|D Chain D, Crystal Structure Of E. Coli O157:h7 E3 Ubiquitin Ligase,
Nlel, With A Human E2, Ubch7
pdb|3SY2|C Chain C, Crystal Structure Of The Salmonella E3 Ubiquitin Ligase
Sopa In Complex With The Human E2 Ubch7
pdb|3SY2|D Chain D, Crystal Structure Of The Salmonella E3 Ubiquitin Ligase
Sopa In Complex With The Human E2 Ubch7
Length = 156
Score = 34.7 bits (78), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 22/89 (24%), Positives = 44/89 (49%), Gaps = 4/89 (4%)
Query: 81 RLLEELEHGQRGVGDGTISWGLENDDDMTLTHWTGMIIGPPRTPYENRMYSLKIECGPRY 140
RL++ELE ++ G ++ D+ L W G+I+ P PY+ + ++I Y
Sbjct: 8 RLMKELEEIRKC---GMKNFRNIQVDEANLLTWQGLIV-PDNPPYDKGAFRIEINFPAEY 63
Query: 141 PDEPPQCRFVSRINMTCINNTSGIVVVIM 169
P +PP+ F ++I I+ + + ++
Sbjct: 64 PFKPPKITFKTKIYHPNIDEKGQVCLPVI 92
>pdb|2Z5D|A Chain A, Human Ubiquitin-Conjugating Enzyme E2 H
pdb|2Z5D|B Chain B, Human Ubiquitin-Conjugating Enzyme E2 H
Length = 179
Score = 34.7 bits (78), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 31/59 (52%), Gaps = 3/59 (5%)
Query: 119 GPPRTPYENRMYSLKIECGPRYPDEPPQCRFVSRINMTCINNTSGIV---VVIMFWVMI 174
GP TPYE ++ ++++ +YP + P F+++I I+ SG V V+ W +
Sbjct: 59 GPQGTPYEGGVWKVRVDLPDKYPFKSPSIGFMNKIFHPNIDEASGTVCLDVINQTWTAL 117
>pdb|2E2C|A Chain A, E2-C, An Ubiquitin Conjugating Enzyme Required For The
Destruction Of Mitotic Cyclins
Length = 156
Score = 33.9 bits (76), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 29/64 (45%)
Query: 106 DDMTLTHWTGMIIGPPRTPYENRMYSLKIECGPRYPDEPPQCRFVSRINMTCINNTSGIV 165
D L W + GP T YE+ Y L +E YP +PP +F + ++ + I
Sbjct: 34 DGDNLFKWVATLDGPKDTVYESLKYKLTLEFPSDYPYKPPVVKFTTPCWHPNVDQSGNIC 93
Query: 166 VVIM 169
+ I+
Sbjct: 94 LDIL 97
>pdb|4DS2|A Chain A, Ubiquitin Conjugating Enzyme (Putative) From Trypanosoma
Cruzi
pdb|4DS2|B Chain B, Ubiquitin Conjugating Enzyme (Putative) From Trypanosoma
Cruzi
Length = 167
Score = 33.1 bits (74), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 40/96 (41%), Gaps = 5/96 (5%)
Query: 82 LLEELEHGQRGVGDGTI-SWGLENDDDMTLTHWTGMIIGPPRTPY--ENRMYSLKIECGP 138
LLEE++ G+ S + + D T+ +W + P + Y Y L +
Sbjct: 20 LLEEVDANNEANSSGSPHSTAIFSVDTDTIYNWILKVKAPADSVYGGAGNTYQLSVLFSD 79
Query: 139 RYPDEPPQCRFVSRINMTCINNTSGIV--VVIMFWV 172
YP EPP RFV+ + + GI +V FW
Sbjct: 80 DYPHEPPTVRFVTPVYSPLVTGEGGICDRMVNDFWT 115
>pdb|1I7K|A Chain A, Crystal Structure Of Human Mitotic-Specific Ubiquitin-
Conjugating Enzyme, Ubch10
pdb|1I7K|B Chain B, Crystal Structure Of Human Mitotic-Specific Ubiquitin-
Conjugating Enzyme, Ubch10
Length = 179
Score = 33.1 bits (74), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 28/58 (48%), Gaps = 3/58 (5%)
Query: 94 GDGTISWGLENDDDMTLTHWTGMIIGPPRTPYENRMYSLKIECGPRYPDEPPQCRFVS 151
GD IS E+D+ L W G I G T YE+ Y L +E YP P +F++
Sbjct: 46 GDKGISAFPESDN---LFKWVGTIHGAAGTVYEDLRYKLSLEFPSGYPYNAPTVKFLT 100
>pdb|3I9Y|A Chain A, Crystal Structure Of The V. Parahaemolyticus Histidine
Kinase Sensor Tors Sensor Domain
Length = 276
Score = 32.0 bits (71), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 35/85 (41%), Gaps = 9/85 (10%)
Query: 132 LKIECGPRYPDEPPQCRFVSRINMTCINNTSGIVVVIMFWVMIEAKATHYPVDLKTGTPD 191
L E R + + ++ T + NTS I V A TH L+ D
Sbjct: 93 LAKEIDTRVEEMRLLSEELEQLTRTQVQNTSTIAV---------ANVTHIYDLLEANKKD 143
Query: 192 QVYLIVCVLIRYQVDLTDRPFQPYL 216
QVY + L+ +DLT+R + +L
Sbjct: 144 QVYQALDALVEVDLDLTERLHELHL 168
>pdb|3O1H|A Chain A, Crystal Structure Of The Tors Sensor Domain - Tort Complex
In The Presence Of Tmao
pdb|3O1I|A Chain A, Crystal Structure Of The Tors Sensor Domain - Tort Complex
In The Absence Of Ligand
pdb|3O1I|B Chain B, Crystal Structure Of The Tors Sensor Domain - Tort Complex
In The Absence Of Ligand
pdb|3O1J|A Chain A, Crystal Structure Of The Tors Sensor Domain - Tort Complex
In The Absence Of Isopropanol
pdb|3O1J|B Chain B, Crystal Structure Of The Tors Sensor Domain - Tort Complex
In The Absence Of Isopropanol
Length = 277
Score = 31.6 bits (70), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 35/85 (41%), Gaps = 9/85 (10%)
Query: 132 LKIECGPRYPDEPPQCRFVSRINMTCINNTSGIVVVIMFWVMIEAKATHYPVDLKTGTPD 191
L E R + + ++ T + NTS I V A TH L+ D
Sbjct: 93 LAKEIDTRVEEMRLLSEELEQLTRTQVQNTSTIAV---------ANVTHIYDLLEANKKD 143
Query: 192 QVYLIVCVLIRYQVDLTDRPFQPYL 216
QVY + L+ +DLT+R + +L
Sbjct: 144 QVYQALDALVEVDLDLTERLHELHL 168
>pdb|1TDJ|A Chain A, Threonine Deaminase (Biosynthetic) From E. Coli
Length = 514
Score = 31.2 bits (69), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 31/64 (48%), Gaps = 6/64 (9%)
Query: 81 RLLEELEHGQRGVGDGTISWGLENDDDMTLTHWTGMIIGPPRTPYENRMYSLKIECGPRY 140
R LEE + + + DG S +DD+M H M+ G P P + R+YS + +
Sbjct: 387 RGLEERKEILQMLNDGGYSVVDLSDDEMAKLHVRYMVGGRPSHPLQERLYSFE------F 440
Query: 141 PDEP 144
P+ P
Sbjct: 441 PESP 444
>pdb|3ZQS|A Chain A, Human Fancl Central Domain
pdb|3ZQS|B Chain B, Human Fancl Central Domain
Length = 186
Score = 31.2 bits (69), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 33/143 (23%), Positives = 54/143 (37%), Gaps = 20/143 (13%)
Query: 13 VFAPYLLYQIQMKGIKKITLKHSINICALRIFHQESSTILVCFHKENYPFCTNFHCYLKL 72
V+A I++K +H I + + ES V F PFC ++ L
Sbjct: 19 VYADTCFSTIKLKAEDASGREHLITLKLKAKYPAESPDYFVDFP---VPFCASWTPQSSL 75
Query: 73 FSVVPRNFRLLEELEHGQRGVGDGTISWGLENDDDMTLTHWTGMIIGPPRTPYENRM--- 129
S+ + +E L+ W + D++ W PPR+ R+
Sbjct: 76 ISIYSQFLAAIESLKAF----------WDVM--DEIDEKTWVLEPEKPPRSATARRIALG 123
Query: 130 --YSLKIECGPRYPDEPPQCRFV 150
S+ IE PR+P P+C F+
Sbjct: 124 NNVSINIEVDPRHPTMLPECFFL 146
>pdb|3ONG|B Chain B, Crystal Structure Of Uba2ufd-ubc9: Insights Into E1-e2
Interactions In Sumo Pathways
pdb|3ONG|D Chain D, Crystal Structure Of Uba2ufd-ubc9: Insights Into E1-e2
Interactions In Sumo Pathways
Length = 159
Score = 31.2 bits (69), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 21/45 (46%)
Query: 105 DDDMTLTHWTGMIIGPPRTPYENRMYSLKIECGPRYPDEPPQCRF 149
D M L W I G T + +Y + +E YP +PP+ +F
Sbjct: 35 DGSMDLQKWEAGIPGKEGTNWAGGVYPITVEYPNEYPSKPPKVKF 79
>pdb|2GJD|A Chain A, Distinct Functional Domains Of Ubc9 Dictate Cell Survival
And Resistance To Genotoxic Stress
pdb|2GJD|B Chain B, Distinct Functional Domains Of Ubc9 Dictate Cell Survival
And Resistance To Genotoxic Stress
pdb|2GJD|C Chain C, Distinct Functional Domains Of Ubc9 Dictate Cell Survival
And Resistance To Genotoxic Stress
pdb|2GJD|D Chain D, Distinct Functional Domains Of Ubc9 Dictate Cell Survival
And Resistance To Genotoxic Stress
pdb|2EKE|A Chain A, Structure Of A Sumo-Binding-Motif Mimic Bound To Smt3p-
Ubc9p: Conservation Of A Noncovalent Ubiquitin-Like
Protein-E2 Complex As A Platform For Selective
Interactions Within A Sumo Pathway
pdb|2EKE|B Chain B, Structure Of A Sumo-Binding-Motif Mimic Bound To Smt3p-
Ubc9p: Conservation Of A Noncovalent Ubiquitin-Like
Protein-E2 Complex As A Platform For Selective
Interactions Within A Sumo Pathway
Length = 157
Score = 30.8 bits (68), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 21/45 (46%)
Query: 105 DDDMTLTHWTGMIIGPPRTPYENRMYSLKIECGPRYPDEPPQCRF 149
D M L W I G T + +Y + +E YP +PP+ +F
Sbjct: 33 DGSMDLQKWEAGIPGKEGTNWAGGVYPITVEYPNEYPSKPPKVKF 77
>pdb|1YF9|A Chain A, Structural Analysis Of Leishmania Major Ubiquitin
Conjugating Enzyme E2
pdb|1YF9|B Chain B, Structural Analysis Of Leishmania Major Ubiquitin
Conjugating Enzyme E2
pdb|1YF9|C Chain C, Structural Analysis Of Leishmania Major Ubiquitin
Conjugating Enzyme E2
Length = 171
Score = 30.4 bits (67), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 24/47 (51%)
Query: 119 GPPRTPYENRMYSLKIECGPRYPDEPPQCRFVSRINMTCINNTSGIV 165
GP TPYE+ + L ++ YP + P F +RI ++ SG V
Sbjct: 46 GPEGTPYEDGTWMLHVQLPSDYPFKSPSIGFCNRILHPNVDERSGSV 92
>pdb|2A7L|A Chain A, Structure Of The Human Hypothetical Ubiquitin-Conjugating
Enzyme, Loc55284
pdb|2A7L|B Chain B, Structure Of The Human Hypothetical Ubiquitin-Conjugating
Enzyme, Loc55284
Length = 136
Score = 30.4 bits (67), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 20/44 (45%)
Query: 109 TLTHWTGMIIGPPRTPYENRMYSLKIECGPRYPDEPPQCRFVSR 152
++T W + G P T YE + L + RYP + PQ F
Sbjct: 52 SITQWIVDMEGAPGTLYEGEKFQLLFKFSSRYPFDSPQVMFTGE 95
>pdb|3HCT|B Chain B, Crystal Structure Of Traf6 In Complex With Ubc13 In The P1
Space Group
pdb|3HCU|B Chain B, Crystal Structure Of Traf6 In Complex With Ubc13 In The C2
Space Group
pdb|3HCU|D Chain D, Crystal Structure Of Traf6 In Complex With Ubc13 In The C2
Space Group
Length = 155
Score = 30.4 bits (67), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 15/64 (23%), Positives = 32/64 (50%)
Query: 106 DDMTLTHWTGMIIGPPRTPYENRMYSLKIECGPRYPDEPPQCRFVSRINMTCINNTSGIV 165
D+ ++ +I GP +P+E + L++ YP P+ RF+++I ++ I
Sbjct: 31 DESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPKVRFMTKIYHPNVDKLGRIC 90
Query: 166 VVIM 169
+ I+
Sbjct: 91 LDIL 94
>pdb|3VON|C Chain C, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|E Chain E, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|G Chain G, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|J Chain J, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|L Chain L, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|N Chain N, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|Q Chain Q, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|S Chain S, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|U Chain U, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|X Chain X, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|Z Chain Z, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|BB Chain b, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|EE Chain e, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|GG Chain g, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|II Chain i, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|LL Chain l, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|NN Chain n, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|PP Chain p, Crystalstructure Of The Ubiquitin Protease
Length = 148
Score = 30.4 bits (67), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 15/64 (23%), Positives = 32/64 (50%)
Query: 106 DDMTLTHWTGMIIGPPRTPYENRMYSLKIECGPRYPDEPPQCRFVSRINMTCINNTSGIV 165
D+ ++ +I GP +P+E + L++ YP P+ RF+++I ++ I
Sbjct: 26 DESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPKVRFMTKIYHPNVDKLGRIC 85
Query: 166 VVIM 169
+ I+
Sbjct: 86 LDIL 89
>pdb|2C2V|B Chain B, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
pdb|2C2V|E Chain E, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
pdb|2C2V|H Chain H, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
pdb|2C2V|K Chain K, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
Length = 154
Score = 30.0 bits (66), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 15/64 (23%), Positives = 32/64 (50%)
Query: 106 DDMTLTHWTGMIIGPPRTPYENRMYSLKIECGPRYPDEPPQCRFVSRINMTCINNTSGIV 165
D+ ++ +I GP +P+E + L++ YP P+ RF+++I ++ I
Sbjct: 30 DESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPKVRFMTKIYHPNVDKLGRIC 89
Query: 166 VVIM 169
+ I+
Sbjct: 90 LDIL 93
>pdb|1J7D|B Chain B, Crystal Structure Of Hmms2-Hubc13
pdb|4DHI|D Chain D, Structure Of C. Elegans Otub1 Bound To Human Ubc13
pdb|4DHJ|C Chain C, The Structure Of A Ceotub1 Ubiquitin Aldehyde Ubc13~ub
Complex
pdb|4DHJ|K Chain K, The Structure Of A Ceotub1 Ubiquitin Aldehyde Ubc13~ub
Complex
pdb|4DHJ|G Chain G, The Structure Of A Ceotub1 Ubiquitin Aldehyde Ubc13~ub
Complex
pdb|4DHJ|N Chain N, The Structure Of A Ceotub1 Ubiquitin Aldehyde Ubc13~ub
Complex
pdb|4DHZ|F Chain F, The Structure Of HCEOTUB1-Ubiquitin Aldehyde-Ubc13~ub
Length = 152
Score = 30.0 bits (66), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 15/64 (23%), Positives = 32/64 (50%)
Query: 106 DDMTLTHWTGMIIGPPRTPYENRMYSLKIECGPRYPDEPPQCRFVSRINMTCINNTSGIV 165
D+ ++ +I GP +P+E + L++ YP P+ RF+++I ++ I
Sbjct: 28 DESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPKVRFMTKIYHPNVDKLGRIC 87
Query: 166 VVIM 169
+ I+
Sbjct: 88 LDIL 91
>pdb|4EPO|B Chain B, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|F Chain F, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|J Chain J, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
Length = 155
Score = 30.0 bits (66), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 15/64 (23%), Positives = 32/64 (50%)
Query: 106 DDMTLTHWTGMIIGPPRTPYENRMYSLKIECGPRYPDEPPQCRFVSRINMTCINNTSGIV 165
D+ ++ +I GP +P+E + L++ YP P+ RF+++I ++ I
Sbjct: 33 DESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPKVRFMTKIYHPNVDKLGRIC 92
Query: 166 VVIM 169
+ I+
Sbjct: 93 LDIL 96
>pdb|3LHQ|A Chain A, Dna-Binding Transcriptional Repressor Acrr From Salmonella
Typhimurium.
pdb|3LHQ|B Chain B, Dna-Binding Transcriptional Repressor Acrr From Salmonella
Typhimurium
Length = 220
Score = 29.6 bits (65), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 33/75 (44%), Gaps = 10/75 (13%)
Query: 70 LKLFSVVPRNFRLLEELEHGQRGVGDGTISWGLENDDDMTLTHWTGMIIGPPRTPYENRM 129
L+LFS + L E+ + GV G I W +N D+ W E+ +
Sbjct: 24 LRLFSQQGVSATSLAEIANAA-GVTRGAIYWHFKNKSDLFSEIWE---------LSESNI 73
Query: 130 YSLKIECGPRYPDEP 144
L+IE ++PD+P
Sbjct: 74 GELEIEYQAKFPDDP 88
>pdb|2FO3|A Chain A, Plasmodium Vivax Ubiquitin Conjugating Enzyme E2
Length = 125
Score = 27.3 bits (59), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 19/40 (47%)
Query: 113 WTGMIIGPPRTPYENRMYSLKIECGPRYPDEPPQCRFVSR 152
W +G T Y N +Y LKI YP +PP F+ +
Sbjct: 38 WIVKYVGLENTIYANEVYKLKIIFPDDYPLKPPIVYFLQK 77
>pdb|2H2Y|A Chain A, Crystal Structure Of Ubiquitin Conjugating Enzyme E2 From
Plasmodium Falciparum
pdb|2H2Y|B Chain B, Crystal Structure Of Ubiquitin Conjugating Enzyme E2 From
Plasmodium Falciparum
pdb|2H2Y|C Chain C, Crystal Structure Of Ubiquitin Conjugating Enzyme E2 From
Plasmodium Falciparum
pdb|2H2Y|D Chain D, Crystal Structure Of Ubiquitin Conjugating Enzyme E2 From
Plasmodium Falciparum
Length = 136
Score = 27.3 bits (59), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 13/40 (32%), Positives = 19/40 (47%)
Query: 113 WTGMIIGPPRTPYENRMYSLKIECGPRYPDEPPQCRFVSR 152
W +G T Y N +Y +KI YP +PP F+ +
Sbjct: 52 WIVQYVGLENTIYANEVYKIKIIFPDNYPLKPPIVYFLQK 91
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.326 0.141 0.461
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,338,670
Number of Sequences: 62578
Number of extensions: 302278
Number of successful extensions: 703
Number of sequences better than 100.0: 117
Number of HSP's better than 100.0 without gapping: 111
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 590
Number of HSP's gapped (non-prelim): 117
length of query: 226
length of database: 14,973,337
effective HSP length: 95
effective length of query: 131
effective length of database: 9,028,427
effective search space: 1182723937
effective search space used: 1182723937
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 50 (23.9 bits)