Query psy15032
Match_columns 226
No_of_seqs 150 out of 1489
Neff 6.0
Searched_HMMs 46136
Date Fri Aug 16 18:41:19 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15032.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/15032hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0417|consensus 100.0 2.8E-37 6.1E-42 250.3 9.4 124 79-219 3-126 (148)
2 COG5078 Ubiquitin-protein liga 100.0 1.4E-36 3.1E-41 249.7 13.6 122 78-215 6-127 (153)
3 PLN00172 ubiquitin conjugating 100.0 1.3E-33 2.9E-38 231.0 12.5 125 78-219 2-126 (147)
4 PTZ00390 ubiquitin-conjugating 100.0 4.9E-33 1.1E-37 229.0 14.5 121 78-215 3-123 (152)
5 KOG0419|consensus 100.0 3.7E-33 7.9E-38 221.8 11.2 116 76-206 3-118 (152)
6 KOG0426|consensus 100.0 1.6E-31 3.5E-36 212.7 10.5 126 77-209 4-135 (165)
7 PF00179 UQ_con: Ubiquitin-con 100.0 6.2E-31 1.3E-35 212.0 12.4 119 81-214 1-119 (140)
8 KOG0424|consensus 100.0 7.4E-31 1.6E-35 211.2 11.8 124 78-213 5-130 (158)
9 KOG0425|consensus 100.0 9.9E-31 2.1E-35 213.2 11.5 121 78-208 6-135 (171)
10 cd00195 UBCc Ubiquitin-conjuga 100.0 3.6E-29 7.7E-34 202.1 12.7 120 80-215 2-121 (141)
11 KOG0418|consensus 100.0 4.1E-29 8.8E-34 209.0 10.7 115 78-206 4-121 (200)
12 smart00212 UBCc Ubiquitin-conj 100.0 3.5E-28 7.7E-33 197.1 13.2 121 80-215 1-121 (145)
13 KOG0421|consensus 100.0 2.2E-28 4.7E-33 197.2 10.1 117 76-207 28-144 (175)
14 KOG0422|consensus 99.9 1E-27 2.2E-32 192.3 9.4 116 77-206 2-117 (153)
15 KOG0427|consensus 99.9 1.7E-25 3.6E-30 178.1 11.4 119 78-213 16-135 (161)
16 KOG0894|consensus 99.9 1.8E-25 3.8E-30 190.7 11.9 123 78-222 6-128 (244)
17 KOG0416|consensus 99.9 5.1E-23 1.1E-27 170.1 8.4 111 79-206 5-116 (189)
18 KOG0420|consensus 99.9 1.1E-22 2.4E-27 168.3 8.3 113 78-206 29-143 (184)
19 KOG0423|consensus 99.9 6.1E-23 1.3E-27 170.2 4.3 115 78-207 11-125 (223)
20 KOG0428|consensus 99.8 2.1E-20 4.6E-25 162.5 9.4 114 75-203 9-122 (314)
21 KOG0895|consensus 99.7 8.2E-18 1.8E-22 168.9 7.1 122 79-219 853-979 (1101)
22 KOG0896|consensus 99.7 2.9E-17 6.2E-22 131.3 8.4 131 74-214 2-132 (138)
23 KOG0429|consensus 99.6 2.5E-15 5.5E-20 129.1 10.2 120 77-210 19-140 (258)
24 KOG0895|consensus 99.6 6.6E-15 1.4E-19 148.2 11.5 141 54-204 254-405 (1101)
25 PF14461 Prok-E2_B: Prokaryoti 97.9 2.9E-05 6.4E-10 62.4 6.0 72 126-205 34-108 (133)
26 PF05743 UEV: UEV domain; Int 97.7 0.00014 3E-09 57.9 7.6 81 109-204 31-118 (121)
27 KOG0897|consensus 97.7 4.1E-05 8.8E-10 60.3 4.1 69 130-207 13-81 (122)
28 KOG2391|consensus 97.1 0.0024 5.3E-08 58.9 8.9 110 80-205 23-139 (365)
29 PF08694 UFC1: Ubiquitin-fold 95.8 0.0064 1.4E-07 49.9 2.6 103 77-194 24-135 (161)
30 PF05773 RWD: RWD domain; Int 94.3 0.21 4.5E-06 37.5 6.9 69 80-153 4-74 (113)
31 PF14462 Prok-E2_E: Prokaryoti 93.3 0.99 2.1E-05 36.2 9.3 95 98-202 14-120 (122)
32 smart00591 RWD domain in RING 90.9 1.3 2.8E-05 32.9 7.1 26 127-152 40-65 (107)
33 KOG3357|consensus 90.2 0.4 8.8E-06 39.0 3.9 81 77-168 27-118 (167)
34 PF14457 Prok-E2_A: Prokaryoti 88.2 0.73 1.6E-05 38.5 4.2 63 132-204 57-127 (162)
35 KOG0309|consensus 56.1 45 0.00098 34.7 7.5 41 111-152 449-491 (1081)
36 KOG4018|consensus 44.1 19 0.00042 31.5 2.5 20 129-148 50-69 (215)
37 cd00421 intradiol_dioxygenase 40.8 35 0.00076 27.6 3.5 25 127-151 65-90 (146)
38 PF09765 WD-3: WD-repeat regio 40.6 82 0.0018 28.7 6.2 91 77-204 99-189 (291)
39 smart00340 HALZ homeobox assoc 39.4 25 0.00054 23.2 1.9 16 77-92 19-34 (44)
40 PF06113 BRE: Brain and reprod 39.0 71 0.0015 29.9 5.5 64 124-202 61-125 (333)
41 cd03457 intradiol_dioxygenase_ 37.0 41 0.00088 28.7 3.4 26 126-151 85-110 (188)
42 PF06113 BRE: Brain and reprod 35.0 45 0.00097 31.2 3.5 27 128-155 306-332 (333)
43 TIGR03737 PRTRC_B PRTRC system 31.1 65 0.0014 28.5 3.8 17 151-168 131-150 (228)
44 cd03459 3,4-PCD Protocatechuat 30.0 64 0.0014 26.7 3.4 25 127-151 72-101 (158)
45 PF14460 Prok-E2_D: Prokaryoti 22.7 39 0.00085 28.2 0.9 18 150-168 89-109 (175)
46 PF08483 IstB_IS21_ATP: IstB-l 22.1 10 0.00022 23.1 -2.0 18 209-226 2-19 (30)
47 TIGR02423 protocat_alph protoc 21.6 1.1E+02 0.0023 26.3 3.4 25 127-151 96-125 (193)
48 COG4464 CapC Capsular polysacc 21.0 62 0.0013 28.8 1.8 18 14-31 117-134 (254)
49 cd03463 3,4-PCD_alpha Protocat 20.4 1.2E+02 0.0027 25.7 3.4 25 127-151 92-121 (185)
No 1
>KOG0417|consensus
Probab=100.00 E-value=2.8e-37 Score=250.26 Aligned_cols=124 Identities=31% Similarity=0.600 Sum_probs=112.0
Q ss_pred HHHHHHHHHHhHcCCCCCcEEEEecCCCCCCcceEEEEEeCCCCCCCCCCeEEEEEEeCCCCCCCCCeeeeeccccccee
Q psy15032 79 NFRLLEELEHGQRGVGDGTISWGLENDDDMTLTHWTGMIIGPPRTPYENRMYSLKIECGPRYPDEPPQCRFVSRINMTCI 158 (226)
Q Consensus 79 ~rRL~kEL~~L~~~~~~g~is~~~~~~d~~nl~~W~~~I~Gp~~TpYeGG~f~~~I~fP~~YP~~PP~V~F~TpI~HPNV 158 (226)
.+||.+|+++|++++++| +++.+.++ |++.|+++|.||.|||||||+|++.|.||++||++||+|+|.|+||||||
T Consensus 3 ~~RI~kE~~~l~~dp~~~-~~~~~~~d---nl~~w~a~I~GP~~SpYEgG~F~l~I~~p~~YP~~PPkV~F~TkIyHPNI 78 (148)
T KOG0417|consen 3 SKRIIKELQDLLRDPPPG-CSAGPVGD---NLFHWQATILGPPGSPYEGGVFFLEIHFPEDYPFKPPKVRFLTKIYHPNI 78 (148)
T ss_pred HHHHHHHHHHHhcCCCCC-CccCCCCC---ceeeEEEEEECCCCCCcCCCEEEEEEECCCCCCCCCCceEeecccccCCc
Confidence 569999999999999988 88886555 79999999999999999999999999999999999999999999999999
Q ss_pred eCCCCeEEccchhhcccccCCCCCCCCCCCCHHHHHHHHHHHHhccccCCCCCCCCcccCC
Q psy15032 159 NNTSGIVVVIMFWVMIEAKATHYPVDLKTGTPDQVYLIVCVLIRYQVDLTDRPFQPYLSGL 219 (226)
Q Consensus 159 ~~~~G~ICl~~LsiL~~w~~~~W~Pa~s~~tI~~VL~~I~sLL~~~~~~~~~~~q~~~~~l 219 (226)
+ .+|+||+| +|.. .|+|+++ |..||++|++||++|+. |+|.-+.++.+
T Consensus 79 ~-~~G~IclD---ILk~----~WsPAl~---i~~VllsI~sLL~~Pnp--ddPL~~~ia~~ 126 (148)
T KOG0417|consen 79 D-SNGRICLD---ILKD----QWSPALT---ISKVLLSICSLLSDPNP--DDPLVPDIAEL 126 (148)
T ss_pred C-ccccchHH---hhhc----cCChhhH---HHHHHHHHHHHhcCCCC--CccccHHHHHH
Confidence 9 99999955 7874 7999886 99999999999999976 67776665543
No 2
>COG5078 Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.4e-36 Score=249.71 Aligned_cols=122 Identities=32% Similarity=0.531 Sum_probs=111.9
Q ss_pred HHHHHHHHHHHhHcCCCCCcEEEEecCCCCCCcceEEEEEeCCCCCCCCCCeEEEEEEeCCCCCCCCCeeeeecccccce
Q psy15032 78 RNFRLLEELEHGQRGVGDGTISWGLENDDDMTLTHWTGMIIGPPRTPYENRMYSLKIECGPRYPDEPPQCRFVSRINMTC 157 (226)
Q Consensus 78 r~rRL~kEL~~L~~~~~~g~is~~~~~~d~~nl~~W~~~I~Gp~~TpYeGG~f~~~I~fP~~YP~~PP~V~F~TpI~HPN 157 (226)
+.+||++|+++|+++++++ +++.+.+++ |+++|+++|.||++||||||.|++.|+||++||++||+|+|.|+|||||
T Consensus 6 a~~RL~kE~~~l~~~~~~~-~~a~p~~d~--~l~~w~~~i~GP~dtpYegg~f~~~l~fP~~YP~~PPkv~F~t~i~HPN 82 (153)
T COG5078 6 ALKRLLKELKKLQKDPPPG-ISAGPVDDD--NLFHWEATITGPPDTPYEGGIFKLTLEFPEDYPFKPPKVRFTTKIFHPN 82 (153)
T ss_pred HHHHHHHHHHHHhcCCCCc-eEEEECCCC--cceeEEEEEECCCCCCcCCCEEEEEEECCCCCCCCCCeeeeccCCcCCC
Confidence 7899999999999999888 899988875 7999999999999999999999999999999999999999999999999
Q ss_pred eeCCCCeEEccchhhcccccCCCCCCCCCCCCHHHHHHHHHHHHhccccCCCCCCCCc
Q psy15032 158 INNTSGIVVVIMFWVMIEAKATHYPVDLKTGTPDQVYLIVCVLIRYQVDLTDRPFQPY 215 (226)
Q Consensus 158 V~~~~G~ICl~~LsiL~~w~~~~W~Pa~s~~tI~~VL~~I~sLL~~~~~~~~~~~q~~ 215 (226)
|| .+|+|| |++|+ +.|+|+++ +++||++|++||.+|+. +.|++..
T Consensus 83 V~-~~G~vC---LdIL~----~~WsP~~~---l~sILlsl~slL~~PN~--~~Pln~d 127 (153)
T COG5078 83 VD-PSGNVC---LDILK----DRWSPVYT---LETILLSLQSLLLSPNP--DSPLNTE 127 (153)
T ss_pred cC-CCCCCh---hHHHh----CCCCcccc---HHHHHHHHHHHHcCCCC--CCCCChH
Confidence 99 999999 55777 48999876 99999999999999866 5565543
No 3
>PLN00172 ubiquitin conjugating enzyme; Provisional
Probab=100.00 E-value=1.3e-33 Score=230.98 Aligned_cols=125 Identities=26% Similarity=0.478 Sum_probs=111.1
Q ss_pred HHHHHHHHHHHhHcCCCCCcEEEEecCCCCCCcceEEEEEeCCCCCCCCCCeEEEEEEeCCCCCCCCCeeeeecccccce
Q psy15032 78 RNFRLLEELEHGQRGVGDGTISWGLENDDDMTLTHWTGMIIGPPRTPYENRMYSLKIECGPRYPDEPPQCRFVSRINMTC 157 (226)
Q Consensus 78 r~rRL~kEL~~L~~~~~~g~is~~~~~~d~~nl~~W~~~I~Gp~~TpYeGG~f~~~I~fP~~YP~~PP~V~F~TpI~HPN 157 (226)
+.+||++|+++|+++++++ +++.+.++ |+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|+|||||
T Consensus 2 a~~Rl~kE~~~l~~~~~~~-~~~~~~~~---nl~~w~~~i~GP~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPN 77 (147)
T PLN00172 2 ATKRIQKEHKDLLKDPPSN-CSAGPSDE---NLFRWTASIIGPSDSPYAGGVFFLSILFPPDYPFKPPKVQFTTKIYHPN 77 (147)
T ss_pred hHHHHHHHHHHHHhCCCCC-eEEEECCC---ChheEEEEEECCCCCCCCCCEEEEEEECCcccCCCCCEEEEecCcccce
Confidence 3589999999999998888 88887654 7999999999999999999999999999999999999999999999999
Q ss_pred eeCCCCeEEccchhhcccccCCCCCCCCCCCCHHHHHHHHHHHHhccccCCCCCCCCcccCC
Q psy15032 158 INNTSGIVVVIMFWVMIEAKATHYPVDLKTGTPDQVYLIVCVLIRYQVDLTDRPFQPYLSGL 219 (226)
Q Consensus 158 V~~~~G~ICl~~LsiL~~w~~~~W~Pa~s~~tI~~VL~~I~sLL~~~~~~~~~~~q~~~~~l 219 (226)
|+ .+|.||++ +|. +.|+|+++ |++||.+|++||.+|+. +.|+++..+.+
T Consensus 78 v~-~~G~iCl~---il~----~~W~p~~t---i~~il~~i~~ll~~P~~--~~p~n~~aa~~ 126 (147)
T PLN00172 78 IN-SNGSICLD---ILR----DQWSPALT---VSKVLLSISSLLTDPNP--DDPLVPEIARV 126 (147)
T ss_pred EC-CCCEEEcc---cCc----CCCCCcCc---HHHHHHHHHHHHhCCCC--CCchHHHHHHH
Confidence 99 89999955 665 47999876 99999999999999944 56877766554
No 4
>PTZ00390 ubiquitin-conjugating enzyme; Provisional
Probab=100.00 E-value=4.9e-33 Score=228.95 Aligned_cols=121 Identities=24% Similarity=0.401 Sum_probs=107.8
Q ss_pred HHHHHHHHHHHhHcCCCCCcEEEEecCCCCCCcceEEEEEeCCCCCCCCCCeEEEEEEeCCCCCCCCCeeeeecccccce
Q psy15032 78 RNFRLLEELEHGQRGVGDGTISWGLENDDDMTLTHWTGMIIGPPRTPYENRMYSLKIECGPRYPDEPPQCRFVSRINMTC 157 (226)
Q Consensus 78 r~rRL~kEL~~L~~~~~~g~is~~~~~~d~~nl~~W~~~I~Gp~~TpYeGG~f~~~I~fP~~YP~~PP~V~F~TpI~HPN 157 (226)
..|||++|+++|++++++| +.+.+.++ |+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|+|||||
T Consensus 3 ~~kRl~~E~~~l~~~~~~~-i~~~~~~~---d~~~w~~~i~GP~~tpY~gg~f~~~i~~p~~YP~~pP~v~F~t~i~HPN 78 (152)
T PTZ00390 3 ISKRIEKETQNLANDPPPG-IKAEPDPG---NYRHFKILMEGPDGTPYEGGYYKLELFLPEQYPMEPPKVRFLTKIYHPN 78 (152)
T ss_pred HHHHHHHHHHHHHhCCCCC-eEEEECCC---CccEEEEEEEcCCCCCCcCcEEEEEEECccccCCCCCEEEEecCCeece
Confidence 5799999999999999888 78877654 7999999999999999999999999999999999999999999999999
Q ss_pred eeCCCCeEEccchhhcccccCCCCCCCCCCCCHHHHHHHHHHHHhccccCCCCCCCCc
Q psy15032 158 INNTSGIVVVIMFWVMIEAKATHYPVDLKTGTPDQVYLIVCVLIRYQVDLTDRPFQPY 215 (226)
Q Consensus 158 V~~~~G~ICl~~LsiL~~w~~~~W~Pa~s~~tI~~VL~~I~sLL~~~~~~~~~~~q~~ 215 (226)
|+ .+|.||++ +|+ +.|+|+++ |.+||++|++||.+|+. +.|....
T Consensus 79 V~-~~G~iCl~---iL~----~~W~p~~t---i~~iL~~i~~ll~~P~~--~~pln~~ 123 (152)
T PTZ00390 79 ID-KLGRICLD---ILK----DKWSPALQ---IRTVLLSIQALLSAPEP--DDPLDTS 123 (152)
T ss_pred EC-CCCeEECc---cCc----ccCCCCCc---HHHHHHHHHHHHhCCCC--CCchHHH
Confidence 99 89999955 665 47999876 99999999999999844 5555443
No 5
>KOG0419|consensus
Probab=100.00 E-value=3.7e-33 Score=221.80 Aligned_cols=116 Identities=22% Similarity=0.468 Sum_probs=107.6
Q ss_pred ccHHHHHHHHHHHhHcCCCCCcEEEEecCCCCCCcceEEEEEeCCCCCCCCCCeEEEEEEeCCCCCCCCCeeeeeccccc
Q psy15032 76 VPRNFRLLEELEHGQRGVGDGTISWGLENDDDMTLTHWTGMIIGPPRTPYENRMYSLKIECGPRYPDEPPQCRFVSRINM 155 (226)
Q Consensus 76 ~~r~rRL~kEL~~L~~~~~~g~is~~~~~~d~~nl~~W~~~I~Gp~~TpYeGG~f~~~I~fP~~YP~~PP~V~F~TpI~H 155 (226)
.++-|||++|+++|+++++.| ++..+.++ |+++|.++|+||.+|||+||+|++.|+|+++||.+||.|+|.+.+||
T Consensus 3 tpArrrLmrDfkrlqedpp~g-isa~P~~~---niM~W~a~I~Gp~~tp~e~gtFkLtl~FteeYpnkPP~VrFvs~mFH 78 (152)
T KOG0419|consen 3 TPARRRLMRDFKRLQEDPPAG-ISAAPVEN---NIMEWNAVIFGPQDTPFEGGTFKLTLEFTEEYPNKPPTVRFVSKMFH 78 (152)
T ss_pred chHHHHHHHHHHHhhcCCCCC-ccCCCCcc---ceeeeeeeEEcCCCCCcCCceEEEEEEcccccCCCCCeeEeeeeccC
Confidence 457799999999999999999 88888877 79999999999999999999999999999999999999999999999
Q ss_pred ceeeCCCCeEEccchhhcccccCCCCCCCCCCCCHHHHHHHHHHHHhcccc
Q psy15032 156 TCINNTSGIVVVIMFWVMIEAKATHYPVDLKTGTPDQVYLIVCVLIRYQVD 206 (226)
Q Consensus 156 PNV~~~~G~ICl~~LsiL~~w~~~~W~Pa~s~~tI~~VL~~I~sLL~~~~~ 206 (226)
|||| .+|.+|+| +|.+ .|+|.+ ++..||.+||+||++|+.
T Consensus 79 PNvy-a~G~iClD---iLqN----rWsp~Y---dva~ILtsiQslL~dPn~ 118 (152)
T KOG0419|consen 79 PNVY-ADGSICLD---ILQN----RWSPTY---DVASILTSIQSLLNDPNP 118 (152)
T ss_pred CCcC-CCCcchHH---HHhc----CCCCch---hHHHHHHHHHHHhcCCCC
Confidence 9999 89999955 7775 899965 599999999999999965
No 6
>KOG0426|consensus
Probab=99.97 E-value=1.6e-31 Score=212.69 Aligned_cols=126 Identities=21% Similarity=0.345 Sum_probs=111.7
Q ss_pred cHHHHHHHHHHHhHcCCCCCcEEEEecCCCCCCcceEEEEEeCCCCCCCCCCeEEEEEEeCCCCCCCCCeeeeecccccc
Q psy15032 77 PRNFRLLEELEHGQRGVGDGTISWGLENDDDMTLTHWTGMIIGPPRTPYENRMYSLKIECGPRYPDEPPQCRFVSRINMT 156 (226)
Q Consensus 77 ~r~rRL~kEL~~L~~~~~~g~is~~~~~~d~~nl~~W~~~I~Gp~~TpYeGG~f~~~I~fP~~YP~~PP~V~F~TpI~HP 156 (226)
.++|||++|+++|..++|+| +.+.+.++| |+++|.|+|.||++|+|+||+|-.++.||.|||..||+++|...+|||
T Consensus 4 ~AlkRLm~EykqLt~~~P~G-IvAgP~~Ed--nfF~W~cLI~GP~~T~f~~GvfpA~l~FP~DYPLsPPkm~Ftc~~fHP 80 (165)
T KOG0426|consen 4 TALKRLMAEYKQLTLNPPEG-IVAGPINED--NFFEWECLIQGPEDTCFEGGVFPARLSFPLDYPLSPPKMRFTCEMFHP 80 (165)
T ss_pred hHHHHHHHHHHHHccCCCCc-ceeCCCCcc--ceeeeeeeeeCCCCCcccCCccceeeecCCCCCCCCCceeeecccccC
Confidence 47899999999999999999 788888776 899999999999999999999999999999999999999999999999
Q ss_pred eeeCCCCeEEccchhhcccc------cCCCCCCCCCCCCHHHHHHHHHHHHhccccCCC
Q psy15032 157 CINNTSGIVVVIMFWVMIEA------KATHYPVDLKTGTPDQVYLIVCVLIRYQVDLTD 209 (226)
Q Consensus 157 NV~~~~G~ICl~~LsiL~~w------~~~~W~Pa~s~~tI~~VL~~I~sLL~~~~~~~~ 209 (226)
||+ .+|+||.++|..-++. ..+.|+|..+ ++.||+++.++|..|+||.-
T Consensus 81 Niy-~dG~VCISILHaPGDDP~~YEls~ERWSPVQS---vEKILLSV~SMLaEPNdESg 135 (165)
T KOG0426|consen 81 NIY-PDGRVCISILHAPGDDPMGYELSAERWSPVQS---VEKILLSVVSMLAEPNDESG 135 (165)
T ss_pred ccc-CCCeEEEEEeeCCCCCCccchhhhhcCChHHH---HHHHHHHHHHHHcCCCcccC
Confidence 999 9999995543322221 2467999877 99999999999999998753
No 7
>PF00179 UQ_con: Ubiquitin-conjugating enzyme; InterPro: IPR000608 The post-translational attachment of ubiquitin (IPR000626 from INTERPRO) to proteins (ubiquitinylation) alters the function, location or trafficking of a protein, or targets it to the 26S proteasome for degradation [, , ]. Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade []. The E1 enzyme mediates an ATP-dependent transfer of a thioester-linked ubiquitin molecule to a cysteine residue on the E2 enzyme. The E2 enzyme (6.3.2.19 from EC) then either transfers the ubiquitin moiety directly to a substrate, or to an E3 ligase, which can also ubiquitinylate a substrate. There are several different E2 enzymes (over 30 in humans), which are broadly grouped into four classes, all of which have a core catalytic domain (containing the active site cysteine), and some of which have short N- and C-terminal amino acid extensions: class I enzymes consist of just the catalytic core domain (UBC), class II possess a UBC and a C-terminal extension, class III possess a UBC and an N-terminal extension, and class IV possess a UBC and both N- and C-terminal extensions. These extensions appear to be important for some subfamily function, including E2 localisation and protein-protein interactions []. In addition, there are proteins with an E2-like fold that are devoid of catalytic activity, but which appear to assist in poly-ubiquitin chain formation.; GO: 0016881 acid-amino acid ligase activity; PDB: 2AAK_A 3SY2_C 1FBV_C 3SQV_C 1C4Z_D 1JAT_B 2GMI_B 2H2Y_D 2R0J_A 3E95_B ....
Probab=99.97 E-value=6.2e-31 Score=211.95 Aligned_cols=119 Identities=29% Similarity=0.527 Sum_probs=101.3
Q ss_pred HHHHHHHHhHcCCCCCcEEEEecCCCCCCcceEEEEEeCCCCCCCCCCeEEEEEEeCCCCCCCCCeeeeecccccceeeC
Q psy15032 81 RLLEELEHGQRGVGDGTISWGLENDDDMTLTHWTGMIIGPPRTPYENRMYSLKIECGPRYPDEPPQCRFVSRINMTCINN 160 (226)
Q Consensus 81 RL~kEL~~L~~~~~~g~is~~~~~~d~~nl~~W~~~I~Gp~~TpYeGG~f~~~I~fP~~YP~~PP~V~F~TpI~HPNV~~ 160 (226)
||++|+++++++++.| +.+.+.+++ |+.+|+++|.||++|||+||.|+|+|.||++||++||+|+|.|+||||||+
T Consensus 1 Rl~~E~~~l~~~~~~~-~~~~~~~~~--~~~~w~~~i~gp~~t~y~gg~f~~~i~~p~~YP~~pP~v~f~t~i~HPni~- 76 (140)
T PF00179_consen 1 RLQKELKELQKNPPPG-ISVQPSEDD--NLFEWHVTIFGPPGTPYEGGIFKFRISFPPDYPFSPPKVRFLTPIFHPNID- 76 (140)
T ss_dssp HHHHHHHHHHHSHTTT-EEEEEESTT--ETTEEEEEEEBETTSTTTTSEEEEEEEETTTTTTS--EEEESSS-SBTTB--
T ss_pred CHHHHHHHHhhCCCCC-EEEEECCCC--ChheEEEEEeccCccceeccccccccccccccccccccccccccccccccc-
Confidence 8999999999999989 888877753 699999999999999999999999999999999999999999999999999
Q ss_pred CCCeEEccchhhcccccCCCCCCCCCCCCHHHHHHHHHHHHhccccCCCCCCCC
Q psy15032 161 TSGIVVVIMFWVMIEAKATHYPVDLKTGTPDQVYLIVCVLIRYQVDLTDRPFQP 214 (226)
Q Consensus 161 ~~G~ICl~~LsiL~~w~~~~W~Pa~s~~tI~~VL~~I~sLL~~~~~~~~~~~q~ 214 (226)
.+|+|| +++|.. +.|+|+++ |.+||.+|+++|.++ ..+++.+.
T Consensus 77 ~~G~ic---l~~l~~---~~W~p~~~---i~~il~~i~~ll~~p--~~~~~~n~ 119 (140)
T PF00179_consen 77 ENGRIC---LDILNP---ESWSPSYT---IESILLSIQSLLSEP--NPEDPLNE 119 (140)
T ss_dssp TTSBBG---HGGGTT---TTC-TTSH---HHHHHHHHHHHHHST--CTTSTSSH
T ss_pred ccccch---hhhhhc---ccCCcccc---cccHHHHHHHHHhCC--CCCCcchH
Confidence 999999 557773 45999775 999999999999888 44555544
No 8
>KOG0424|consensus
Probab=99.97 E-value=7.4e-31 Score=211.24 Aligned_cols=124 Identities=24% Similarity=0.366 Sum_probs=109.5
Q ss_pred HHHHHHHHHHHhHcCCCCCcEEEEecC-CC-CCCcceEEEEEeCCCCCCCCCCeEEEEEEeCCCCCCCCCeeeeeccccc
Q psy15032 78 RNFRLLEELEHGQRGVGDGTISWGLEN-DD-DMTLTHWTGMIIGPPRTPYENRMYSLKIECGPRYPDEPPQCRFVSRINM 155 (226)
Q Consensus 78 r~rRL~kEL~~L~~~~~~g~is~~~~~-~d-~~nl~~W~~~I~Gp~~TpYeGG~f~~~I~fP~~YP~~PP~V~F~TpI~H 155 (226)
...||+.|-+.+.++.+.| +.+.+.. .| ..|++.|+|.|.|++||+||||.|.+.|.||++||..||+|+|.+++||
T Consensus 5 ~~~rl~eErk~wrk~hp~g-f~AkP~~~~dg~~nl~~Wec~IPG~~~t~wEGg~y~l~v~F~~dyP~~PPkckF~~pl~H 83 (158)
T KOG0424|consen 5 ALNRLAEERKKWRKDHPFG-FYAKPVKNADGTLNLMNWECGIPGKKGTPWEGGLYKLTVNFPDDYPSSPPKCKFKPPLFH 83 (158)
T ss_pred HHHHHHHHHHHHhhcCCCc-eeeeccCCCCCcceeEEEEeecCCCCCCcCcCceEEEEEeCCccCCCCCCccccCCCCcC
Confidence 5789999999999999999 5655543 33 6799999999999999999999999999999999999999999999999
Q ss_pred ceeeCCCCeEEccchhhcccccCCCCCCCCCCCCHHHHHHHHHHHHhccccCCCCCCC
Q psy15032 156 TCINNTSGIVVVIMFWVMIEAKATHYPVDLKTGTPDQVYLIVCVLIRYQVDLTDRPFQ 213 (226)
Q Consensus 156 PNV~~~~G~ICl~~LsiL~~w~~~~W~Pa~s~~tI~~VL~~I~sLL~~~~~~~~~~~q 213 (226)
|||| .+|.|| |++|++ ...|+|+++ |.+||++||.||.+|+- ..|+|
T Consensus 84 PNVy-psgtVc---LsiL~e--~~~W~pait---ikqiL~gIqdLL~~Pn~--~~pAq 130 (158)
T KOG0424|consen 84 PNVY-PSGTVC---LSILNE--EKDWRPAIT---IKQILLGIQDLLDTPNI--TSPAQ 130 (158)
T ss_pred CCcC-CCCcEe---hhhhcc--ccCCCchhh---HHHHHHHHHHHhcCCCC--CCchh
Confidence 9999 899999 678986 335999876 99999999999999954 44554
No 9
>KOG0425|consensus
Probab=99.97 E-value=9.9e-31 Score=213.18 Aligned_cols=121 Identities=25% Similarity=0.422 Sum_probs=109.3
Q ss_pred HHHHHHHHHHHhHcCCCCCcEEEEecCCCCCCcceEEEEEeCCCCCCCCCCeEEEEEEeCCCCCCCCCeeeeecccccce
Q psy15032 78 RNFRLLEELEHGQRGVGDGTISWGLENDDDMTLTHWTGMIIGPPRTPYENRMYSLKIECGPRYPDEPPQCRFVSRINMTC 157 (226)
Q Consensus 78 r~rRL~kEL~~L~~~~~~g~is~~~~~~d~~nl~~W~~~I~Gp~~TpYeGG~f~~~I~fP~~YP~~PP~V~F~TpI~HPN 157 (226)
...-|+++|++|++++.+| +++.+.+++ |+++|.+.|.||++|+|+||.|+..+.||.+||.+||+++|+|++||||
T Consensus 6 a~~ll~~qlk~L~~~pv~g-f~~glvd~~--dif~WeV~i~gppdTlYeGG~FkA~m~FP~dYP~sPP~~rF~s~mwHPN 82 (171)
T KOG0425|consen 6 ASLLLLKQLKELQEEPVEG-FSVGLVDDS--DIFEWEVAIIGPPDTLYEGGFFKAHMKFPQDYPLSPPTFRFTSKMWHPN 82 (171)
T ss_pred hHHHHHHHHHHHhcCCCCc-cccccccCC--ceeEEEEEEEcCCCccccCceeEEEEeCcccCCCCCCceeeehhhcCCC
Confidence 4567889999999999999 899998876 7999999999999999999999999999999999999999999999999
Q ss_pred eeCCCCeEEccchhhccccc---------CCCCCCCCCCCCHHHHHHHHHHHHhccccCC
Q psy15032 158 INNTSGIVVVIMFWVMIEAK---------ATHYPVDLKTGTPDQVYLIVCVLIRYQVDLT 208 (226)
Q Consensus 158 V~~~~G~ICl~~LsiL~~w~---------~~~W~Pa~s~~tI~~VL~~I~sLL~~~~~~~ 208 (226)
|| ++|+|| +|+|..-. .+.|.|.- |+++||++|.+||++|+++.
T Consensus 83 vy-~~G~vC---ISILH~pgdD~~gyE~~~erW~Pv~---tvetIllSiIsmL~~PN~~S 135 (171)
T KOG0425|consen 83 VY-EDGDVC---ISILHPPGDDPSGYELPSERWLPVQ---TVETILLSIISMLNSPNDES 135 (171)
T ss_pred cC-CCCCEE---EEeecCCCCCcccCCChhhccCCcc---chhHhHHHHHHHHcCCCCCC
Confidence 99 999999 66776532 55799955 59999999999999998853
No 10
>cd00195 UBCc Ubiquitin-conjugating enzyme E2, catalytic (UBCc) domain. This is part of the ubiquitin-mediated protein degradation pathway in which a thiol-ester linkage forms between a conserved cysteine and the C-terminus of ubiquitin and complexes with ubiquitin protein ligase enzymes, E3. This pathway regulates many fundamental cellular processes. There are also other E2s which form thiol-ester linkages without the use of E3s as well as several UBC homologs (TSG101, Mms2, Croc-1 and similar proteins) which lack the active site cysteine essential for ubiquitination and appear to function in DNA repair pathways which were omitted from the scope of this CD.
Probab=99.96 E-value=3.6e-29 Score=202.09 Aligned_cols=120 Identities=28% Similarity=0.497 Sum_probs=106.5
Q ss_pred HHHHHHHHHhHcCCCCCcEEEEecCCCCCCcceEEEEEeCCCCCCCCCCeEEEEEEeCCCCCCCCCeeeeecccccceee
Q psy15032 80 FRLLEELEHGQRGVGDGTISWGLENDDDMTLTHWTGMIIGPPRTPYENRMYSLKIECGPRYPDEPPQCRFVSRINMTCIN 159 (226)
Q Consensus 80 rRL~kEL~~L~~~~~~g~is~~~~~~d~~nl~~W~~~I~Gp~~TpYeGG~f~~~I~fP~~YP~~PP~V~F~TpI~HPNV~ 159 (226)
|||++|++++++++++| +.+.+.++ |++.|+++|.||++|||+||.|+++|.||++||++||+|+|.|+++||||+
T Consensus 2 ~Rl~~E~~~l~~~~~~~-~~v~~~~~---~~~~w~~~i~g~~~t~y~g~~~~~~~~~p~~yP~~pP~v~f~~~i~HpnV~ 77 (141)
T cd00195 2 KRLQKELKDLKKDPPSG-ISAEPVEE---NLLEWHGTIRGPPDTPYEGGIFKLDIEFPEDYPFKPPKVRFVTKIYHPNVD 77 (141)
T ss_pred chHHHHHHHHHhCCCCC-eEEEECCC---ChhEEEEEEecCCCCCccCCEEEEEEECCCccCCCCCeEEEeCCcccCCCC
Confidence 79999999999999888 78887665 699999999999999999999999999999999999999999999999999
Q ss_pred CCCCeEEccchhhcccccCCCCCCCCCCCCHHHHHHHHHHHHhccccCCCCCCCCc
Q psy15032 160 NTSGIVVVIMFWVMIEAKATHYPVDLKTGTPDQVYLIVCVLIRYQVDLTDRPFQPY 215 (226)
Q Consensus 160 ~~~G~ICl~~LsiL~~w~~~~W~Pa~s~~tI~~VL~~I~sLL~~~~~~~~~~~q~~ 215 (226)
.+|.|| +++|.. +.|+|+++ +.+||.+|+++|.++.. +.++++.
T Consensus 78 -~~G~ic---l~~l~~---~~W~p~~~---l~~il~~i~~~l~~p~~--~~~~n~~ 121 (141)
T cd00195 78 -ENGKIC---LSILKT---HGWSPAYT---LRTVLLSLQSLLNEPNP--SDPLNAE 121 (141)
T ss_pred -CCCCCc---hhhcCC---CCcCCcCc---HHHHHHHHHHHHhCCCC--CCchhHH
Confidence 999999 557764 25999776 99999999999997743 5565543
No 11
>KOG0418|consensus
Probab=99.96 E-value=4.1e-29 Score=209.03 Aligned_cols=115 Identities=23% Similarity=0.406 Sum_probs=104.2
Q ss_pred HHHHHHHHHHHhHcCC---CCCcEEEEecCCCCCCcceEEEEEeCCCCCCCCCCeEEEEEEeCCCCCCCCCeeeeecccc
Q psy15032 78 RNFRLLEELEHGQRGV---GDGTISWGLENDDDMTLTHWTGMIIGPPRTPYENRMYSLKIECGPRYPDEPPQCRFVSRIN 154 (226)
Q Consensus 78 r~rRL~kEL~~L~~~~---~~g~is~~~~~~d~~nl~~W~~~I~Gp~~TpYeGG~f~~~I~fP~~YP~~PP~V~F~TpI~ 154 (226)
+.+||++|++++.+++ ..| |.+...++ |+.+.++.|.||+|||||||+|.++|++|++|||+||+|+|.|+||
T Consensus 4 ~~~ri~~e~k~v~~~~eisq~~-I~ve~vn~---~~~~ikG~I~GP~~TPYEGG~FeldI~iPe~YPF~pPkv~F~TkIw 79 (200)
T KOG0418|consen 4 AFKRINREQKEVLDDPEISQAG-IIVEMVNE---NLKEIKGHIAGPEDTPYEGGVFELDIKIPENYPFKPPKVKFITKIW 79 (200)
T ss_pred HHHHHHHHHHHhccChhhhhcc-eEEEEccC---ChhhceeEecCCCCCCCCCceEEEEEecCCCCCCCCCceeeeeeee
Confidence 6899999999999887 345 88888876 6899999999999999999999999999999999999999999999
Q ss_pred cceeeCCCCeEEccchhhcccccCCCCCCCCCCCCHHHHHHHHHHHHhcccc
Q psy15032 155 MTCINNTSGIVVVIMFWVMIEAKATHYPVDLKTGTPDQVYLIVCVLIRYQVD 206 (226)
Q Consensus 155 HPNV~~~~G~ICl~~LsiL~~w~~~~W~Pa~s~~tI~~VL~~I~sLL~~~~~ 206 (226)
||||...+|.|||| +|. +.|.|++ |+..+|++||++|+.+..
T Consensus 80 HPnVSs~tGaICLD---ilk----d~Wa~sl---TlrtvLislQalL~~pEp 121 (200)
T KOG0418|consen 80 HPNVSSQTGAICLD---ILK----DQWAASL---TLRTVLISLQALLCAPEP 121 (200)
T ss_pred cCCCCcccccchhh---hhh----cccchhh---hHHHHHHHHHHHHcCCCC
Confidence 99999899999955 676 5899976 599999999999998843
No 12
>smart00212 UBCc Ubiquitin-conjugating enzyme E2, catalytic domain homologues. Proteins destined for proteasome-mediated degradation may be ubiquitinated. Ubiquitination follows conjugation of ubiquitin to a conserved cysteine residue of UBC homologues. This pathway functions in regulating many fundamental processes required for cell viability.TSG101 is one of several UBC homologues that lacks this active site cysteine.
Probab=99.96 E-value=3.5e-28 Score=197.11 Aligned_cols=121 Identities=31% Similarity=0.570 Sum_probs=105.2
Q ss_pred HHHHHHHHHhHcCCCCCcEEEEecCCCCCCcceEEEEEeCCCCCCCCCCeEEEEEEeCCCCCCCCCeeeeecccccceee
Q psy15032 80 FRLLEELEHGQRGVGDGTISWGLENDDDMTLTHWTGMIIGPPRTPYENRMYSLKIECGPRYPDEPPQCRFVSRINMTCIN 159 (226)
Q Consensus 80 rRL~kEL~~L~~~~~~g~is~~~~~~d~~nl~~W~~~I~Gp~~TpYeGG~f~~~I~fP~~YP~~PP~V~F~TpI~HPNV~ 159 (226)
+||++|+++++++.++| +.+.+.+++ |++.|+++|.||++|||+||.|++.|.||++||.+||+|+|.++++||||+
T Consensus 1 ~Rl~~E~~~~~~~~~~~-~~v~~~~~~--~~~~w~~~i~gp~~~~y~g~~f~~~l~~p~~yP~~pP~v~f~~~i~Hp~i~ 77 (145)
T smart00212 1 KRLLKELKELLKDPPPG-ISAYPVDED--NLLEWTGTIVGPPGTPYEGGIFKLTIEFPPDYPFKPPKVKFITKIYHPNVD 77 (145)
T ss_pred ChHHHHHHHHHhCCCCC-eEEEECCCC--ChheEEEEEEcCCCCCcCCcEEEEEEECCcccCCCCCEEEEeCCceEeeEC
Confidence 59999999999999888 776666543 799999999999999999999999999999999999999999999999999
Q ss_pred CCCCeEEccchhhcccccCCCCCCCCCCCCHHHHHHHHHHHHhccccCCCCCCCCc
Q psy15032 160 NTSGIVVVIMFWVMIEAKATHYPVDLKTGTPDQVYLIVCVLIRYQVDLTDRPFQPY 215 (226)
Q Consensus 160 ~~~G~ICl~~LsiL~~w~~~~W~Pa~s~~tI~~VL~~I~sLL~~~~~~~~~~~q~~ 215 (226)
.+|.|| +++|.. +.|+|+++ +.+||.+|+++|.++.. +.++++.
T Consensus 78 -~~G~ic---l~~l~~---~~W~p~~~---l~~il~~i~~~l~~p~~--~~~~n~e 121 (145)
T smart00212 78 -SSGEIC---LDILKQ---EKWSPATT---LETVLLSIQSLLSEPNP--DSPLNAD 121 (145)
T ss_pred -CCCCEe---hhhcCC---CCCCCCCc---HHHHHHHHHHHHhCCCC--CCcccHH
Confidence 799999 456662 47999765 99999999999998633 5555543
No 13
>KOG0421|consensus
Probab=99.95 E-value=2.2e-28 Score=197.23 Aligned_cols=117 Identities=25% Similarity=0.353 Sum_probs=106.2
Q ss_pred ccHHHHHHHHHHHhHcCCCCCcEEEEecCCCCCCcceEEEEEeCCCCCCCCCCeEEEEEEeCCCCCCCCCeeeeeccccc
Q psy15032 76 VPRNFRLLEELEHGQRGVGDGTISWGLENDDDMTLTHWTGMIIGPPRTPYENRMYSLKIECGPRYPDEPPQCRFVSRINM 155 (226)
Q Consensus 76 ~~r~rRL~kEL~~L~~~~~~g~is~~~~~~d~~nl~~W~~~I~Gp~~TpYeGG~f~~~I~fP~~YP~~PP~V~F~TpI~H 155 (226)
-.-.|||++||..|.....+| |++.+++| |++.|.++|.||.+|+|+|-.|++.+.||.+||+.||.|+|+|+.||
T Consensus 28 ~~V~KRLq~ELm~Lmms~~~g-ISAFP~~d---nlf~WvGtItGp~dTvyegl~yklSl~Fp~~YPy~pP~vkFltpc~H 103 (175)
T KOG0421|consen 28 HSVTKRLQSELMGLMMSNTPG-ISAFPESD---NLFKWVGTITGPKDTVYEGLKYKLSLSFPNNYPYKPPTVKFLTPCFH 103 (175)
T ss_pred chHHHHHHHHHHHHHhcCCCC-cccCcCcC---ceeEEeeEeeCCCCccccCcEEEEEEecCCCCCCCCCeeEeeccccC
Confidence 346799999999999888889 88887766 79999999999999999999999999999999999999999999999
Q ss_pred ceeeCCCCeEEccchhhcccccCCCCCCCCCCCCHHHHHHHHHHHHhccccC
Q psy15032 156 TCINNTSGIVVVIMFWVMIEAKATHYPVDLKTGTPDQVYLIVCVLIRYQVDL 207 (226)
Q Consensus 156 PNV~~~~G~ICl~~LsiL~~w~~~~W~Pa~s~~tI~~VL~~I~sLL~~~~~~ 207 (226)
|||| ..|.|||| +|.+ .|+..+ +++.||++||+||-.|++.
T Consensus 104 PNVD-~~GnIcLD---ILkd----KWSa~Y---dVrTILLSiQSLLGEPNn~ 144 (175)
T KOG0421|consen 104 PNVD-LSGNICLD---ILKD----KWSAVY---DVRTILLSIQSLLGEPNNS 144 (175)
T ss_pred CCcc-ccccchHH---HHHH----HHHHHH---hHHHHHHHHHHHhCCCCCC
Confidence 9999 99999955 7774 788644 5999999999999999774
No 14
>KOG0422|consensus
Probab=99.95 E-value=1e-27 Score=192.27 Aligned_cols=116 Identities=23% Similarity=0.396 Sum_probs=102.1
Q ss_pred cHHHHHHHHHHHhHcCCCCCcEEEEecCCCCCCcceEEEEEeCCCCCCCCCCeEEEEEEeCCCCCCCCCeeeeecccccc
Q psy15032 77 PRNFRLLEELEHGQRGVGDGTISWGLENDDDMTLTHWTGMIIGPPRTPYENRMYSLKIECGPRYPDEPPQCRFVSRINMT 156 (226)
Q Consensus 77 ~r~rRL~kEL~~L~~~~~~g~is~~~~~~d~~nl~~W~~~I~Gp~~TpYeGG~f~~~I~fP~~YP~~PP~V~F~TpI~HP 156 (226)
.+.+||.+||++|+++.... +.-...+ +.|+..|.+.|. |.+.||..|.|+++|.||.+|||+||+|.|.|+||||
T Consensus 2 ~a~~Rl~kEL~dl~~~~~~~-~rn~~~~--e~nll~wt~lli-pd~ppY~kgaF~l~I~fp~eYPFKPP~i~f~tkiYHp 77 (153)
T KOG0422|consen 2 AAPRRLRKELADLQKNKMKF-FRNIEVD--EANLLKWTGLLI-PDKPPYNKGAFRLEIDFPVEYPFKPPKIKFKTKIYHP 77 (153)
T ss_pred chhHHHHHHHHHHHhccHHH-Hhhhhcc--cccceeEEeEec-CCCCCccCcceEEEeeCCCCCCCCCCeeeeeeeeccC
Confidence 36799999999999987654 3322222 338999999999 9999999999999999999999999999999999999
Q ss_pred eeeCCCCeEEccchhhcccccCCCCCCCCCCCCHHHHHHHHHHHHhcccc
Q psy15032 157 CINNTSGIVVVIMFWVMIEAKATHYPVDLKTGTPDQVYLIVCVLIRYQVD 206 (226)
Q Consensus 157 NV~~~~G~ICl~~LsiL~~w~~~~W~Pa~s~~tI~~VL~~I~sLL~~~~~ 206 (226)
||| +.|.|| ++++.+ +.|.|++. ++|||+++.+++++|.-
T Consensus 78 NVD-e~gqvC---lPiis~---EnWkP~T~---teqVlqaLi~liN~P~p 117 (153)
T KOG0422|consen 78 NVD-EKGQVC---LPIISA---ENWKPATR---TEQVLQALIALINDPEP 117 (153)
T ss_pred CCC-CCCcee---eeeeec---ccccCccc---HHHHHHHHHHHhcCCCc
Confidence 999 889999 778884 89999998 99999999999999943
No 15
>KOG0427|consensus
Probab=99.93 E-value=1.7e-25 Score=178.11 Aligned_cols=119 Identities=25% Similarity=0.411 Sum_probs=106.9
Q ss_pred HHHHHHHHHHHhHcCCCCCcEEEEecCCCCCCcceEEEEEeCCCCCCCCCCeEEEEEEeCCCCCCCCCeeeeeccc-ccc
Q psy15032 78 RNFRLLEELEHGQRGVGDGTISWGLENDDDMTLTHWTGMIIGPPRTPYENRMYSLKIECGPRYPDEPPQCRFVSRI-NMT 156 (226)
Q Consensus 78 r~rRL~kEL~~L~~~~~~g~is~~~~~~d~~nl~~W~~~I~Gp~~TpYeGG~f~~~I~fP~~YP~~PP~V~F~TpI-~HP 156 (226)
+.+||+|||.+++.++|.| +..... + |+..|++-+.|.+||.|+|..|.+.++||+.||++.|+|.|..++ .||
T Consensus 16 at~RLqKEl~e~q~~pP~G-~~~~v~-d---nlqqWii~v~Ga~GTLYa~e~~qLq~~F~~~YP~esPqVmF~~~~P~HP 90 (161)
T KOG0427|consen 16 ATNRLQKELSEWQNNPPTG-FKHRVT-D---NLQQWIIEVTGAPGTLYANETYQLQVEFPEHYPMESPQVMFVGPAPLHP 90 (161)
T ss_pred HHHHHHHHHHHHhcCCCCc-ceeecc-c---chheeEEEEecCCceeecCcEEEEEEecCCCCCCCCCeEEEecCCCCCC
Confidence 6799999999999999999 676633 3 699999999999999999999999999999999999999999998 799
Q ss_pred eeeCCCCeEEccchhhcccccCCCCCCCCCCCCHHHHHHHHHHHHhccccCCCCCCC
Q psy15032 157 CINNTSGIVVVIMFWVMIEAKATHYPVDLKTGTPDQVYLIVCVLIRYQVDLTDRPFQ 213 (226)
Q Consensus 157 NV~~~~G~ICl~~LsiL~~w~~~~W~Pa~s~~tI~~VL~~I~sLL~~~~~~~~~~~q 213 (226)
+|| +||.||| ++|. |.|+|+++ +.+|.++|.+||++. .++++|.-
T Consensus 91 HiY-SNGHICL---~iL~----d~WsPAms---v~SvClSIlSMLSSs-~eKqrP~D 135 (161)
T KOG0427|consen 91 HIY-SNGHICL---DILY----DSWSPAMS---VQSVCLSILSMLSSS-KEKQRPTD 135 (161)
T ss_pred cee-cCCeEEE---Eeec----ccCCcchh---hHHHHHHHHHHHccC-ccccCCCc
Confidence 999 9999995 5776 48999997 999999999999987 66666653
No 16
>KOG0894|consensus
Probab=99.93 E-value=1.8e-25 Score=190.72 Aligned_cols=123 Identities=16% Similarity=0.223 Sum_probs=105.2
Q ss_pred HHHHHHHHHHHhHcCCCCCcEEEEecCCCCCCcceEEEEEeCCCCCCCCCCeEEEEEEeCCCCCCCCCeeeeecccccce
Q psy15032 78 RNFRLLEELEHGQRGVGDGTISWGLENDDDMTLTHWTGMIIGPPRTPYENRMYSLKIECGPRYPDEPPQCRFVSRINMTC 157 (226)
Q Consensus 78 r~rRL~kEL~~L~~~~~~g~is~~~~~~d~~nl~~W~~~I~Gp~~TpYeGG~f~~~I~fP~~YP~~PP~V~F~TpI~HPN 157 (226)
+.|||+||++.|++++.++ +.+.+.++ ||.+||.+|.||++|||+||.|+.+|.||++||++||.|+++||-..-
T Consensus 6 a~kRl~keY~~l~k~Pv~~-i~A~P~p~---nILEWHYvl~GpedTPy~GG~YhGkl~FP~eyP~KPPaI~MiTPNGRF- 80 (244)
T KOG0894|consen 6 AVKRLQKEYRALCKDPVPY-IVARPNPN---NILEWHYVLRGPEDTPYYGGYYHGKLIFPPEYPFKPPAITMITPNGRF- 80 (244)
T ss_pred HHHHHHHHHHHHHhCCchh-hccCCCcc---ceeeeEEEeeCCCCCCccCceeeeEEeCCCCCCCCCCeeEEECCCCce-
Confidence 6899999999999999999 88888877 799999999999999999999999999999999999999999953111
Q ss_pred eeCCCCeEEccchhhcccccCCCCCCCCCCCCHHHHHHHHHHHHhccccCCCCCCCCcccCCCCC
Q psy15032 158 INNTSGIVVVIMFWVMIEAKATHYPVDLKTGTPDQVYLIVCVLIRYQVDLTDRPFQPYLSGLPDS 222 (226)
Q Consensus 158 V~~~~G~ICl~~LsiL~~w~~~~W~Pa~s~~tI~~VL~~I~sLL~~~~~~~~~~~q~~~~~l~~~ 222 (226)
..+-++||+ +.+++++.|+|.|+ +..||.++.++|.+. -|..+++..+
T Consensus 81 --ktntRLCLS----iSDfHPdsWNP~Ws---VStILtGLlSFM~e~--------~pTtGSI~tS 128 (244)
T KOG0894|consen 81 --KTNTRLCLS----ISDFHPDSWNPGWS---VSTILTGLLSFMTED--------SPTTGSIETS 128 (244)
T ss_pred --ecCceEEEe----ccccCcCcCCCccc---HHHHHHHHHHHHhcC--------CCccCccccc
Confidence 134579966 35567899999998 999999999999987 4565555443
No 17
>KOG0416|consensus
Probab=99.88 E-value=5.1e-23 Score=170.08 Aligned_cols=111 Identities=21% Similarity=0.313 Sum_probs=95.1
Q ss_pred HHHHHHHHHHhHcCCCCCcEEEEecCCCCCCcceEEEEEeCCCCCCCCCCeEEEEEEeCCCCCCCCCeeeeeccccccee
Q psy15032 79 NFRLLEELEHGQRGVGDGTISWGLENDDDMTLTHWTGMIIGPPRTPYENRMYSLKIECGPRYPDEPPQCRFVSRINMTCI 158 (226)
Q Consensus 79 ~rRL~kEL~~L~~~~~~g~is~~~~~~d~~nl~~W~~~I~Gp~~TpYeGG~f~~~I~fP~~YP~~PP~V~F~TpI~HPNV 158 (226)
.||+..|..+|.... +.+...++ ++.+++|.+.||.+|||+||+++++|++|++||++.|.|.|.++||||||
T Consensus 5 ~rRid~Dv~KL~~s~----yeV~~ind---~m~ef~V~f~GP~ds~YegGvWkv~V~lPd~YP~KSPSIGFvnKIfHPNI 77 (189)
T KOG0416|consen 5 KRRIDTDVMKLLMSD----YEVTIIND---GMQEFYVKFHGPKDSPYEGGVWKVRVELPDNYPFKSPSIGFVNKIFHPNI 77 (189)
T ss_pred ccchhhHHHHHHhcC----CeEEEecC---cccEEEEEeeCCCCCcccCceEEEEEECCCCCCCCCCcccceeeccCCCc
Confidence 489999999988663 55666665 59999999999999999999999999999999999999999999999999
Q ss_pred eCCCCeEEccchhhcccccCCCCCCCCCCCCHHHHHHHH-HHHHhcccc
Q psy15032 159 NNTSGIVVVIMFWVMIEAKATHYPVDLKTGTPDQVYLIV-CVLIRYQVD 206 (226)
Q Consensus 159 ~~~~G~ICl~~LsiL~~w~~~~W~Pa~s~~tI~~VL~~I-~sLL~~~~~ 206 (226)
+..+|.|| |.++++ .|+|.+. +..|+..+ -.||.+|+.
T Consensus 78 De~SGsVC---LDViNQ----tWSp~yD---L~NIfetfLPQLL~YPNp 116 (189)
T KOG0416|consen 78 DEASGSVC---LDVINQ----TWSPLYD---LVNIFETFLPQLLRYPNP 116 (189)
T ss_pred hhccCccH---HHHHhh----hhhHHHH---HHHHHHHHhHHHhcCCCC
Confidence 99999999 558886 7998665 76666553 578888865
No 18
>KOG0420|consensus
Probab=99.88 E-value=1.1e-22 Score=168.34 Aligned_cols=113 Identities=18% Similarity=0.261 Sum_probs=92.1
Q ss_pred HHHHHHHHHHHhHcCCCCCcEEEEec--CCCCCCcceEEEEEeCCCCCCCCCCeEEEEEEeCCCCCCCCCeeeeeccccc
Q psy15032 78 RNFRLLEELEHGQRGVGDGTISWGLE--NDDDMTLTHWTGMIIGPPRTPYENRMYSLKIECGPRYPDEPPQCRFVSRINM 155 (226)
Q Consensus 78 r~rRL~kEL~~L~~~~~~g~is~~~~--~~d~~nl~~W~~~I~Gp~~TpYeGG~f~~~I~fP~~YP~~PP~V~F~TpI~H 155 (226)
+..||++|+.++. .|++ ++.... .++. +..+..++|. |.++.|+||.|.|.+.+|+.||++||+|+|+|+|||
T Consensus 29 a~lrl~~di~eln--Lp~t-~~~s~~~~~~d~-~~~~~elti~-PdEGyY~gGkf~F~~~v~~~Yp~~PPKVkCltkV~H 103 (184)
T KOG0420|consen 29 ALLRLKKDILELN--LPPT-CSLSFPDSPDDL-NNLEFELTIT-PDEGYYQGGKFRFKFKVPNAYPHEPPKVKCLTKVYH 103 (184)
T ss_pred HHHHHHhhhhhcc--CCCc-cccccccCCccc-ccceEEEEEc-cCcceecCceEEEEEECCCCCCCCCCeeeeeecccc
Confidence 4566666666654 4444 443322 2332 3346899998 999999999999999999999999999999999999
Q ss_pred ceeeCCCCeEEccchhhcccccCCCCCCCCCCCCHHHHHHHHHHHHhcccc
Q psy15032 156 TCINNTSGIVVVIMFWVMIEAKATHYPVDLKTGTPDQVYLIVCVLIRYQVD 206 (226)
Q Consensus 156 PNV~~~~G~ICl~~LsiL~~w~~~~W~Pa~s~~tI~~VL~~I~sLL~~~~~ 206 (226)
|||+ .+|.|| |++|++ .|.|+. ++.+|+.+++.||.+++.
T Consensus 104 PNId-~~GnVC---LnILRe----dW~P~l---nL~sIi~GL~~LF~epn~ 143 (184)
T KOG0420|consen 104 PNID-LDGNVC---LNILRE----DWRPVL---NLNSIIYGLQFLFLEPNP 143 (184)
T ss_pred CCcC-CcchHH---HHHHHh----cCcccc---chHHHHHHHHHHhccCCC
Confidence 9999 999999 678985 799966 499999999999999974
No 19
>KOG0423|consensus
Probab=99.87 E-value=6.1e-23 Score=170.21 Aligned_cols=115 Identities=23% Similarity=0.353 Sum_probs=104.2
Q ss_pred HHHHHHHHHHHhHcCCCCCcEEEEecCCCCCCcceEEEEEeCCCCCCCCCCeEEEEEEeCCCCCCCCCeeeeecccccce
Q psy15032 78 RNFRLLEELEHGQRGVGDGTISWGLENDDDMTLTHWTGMIIGPPRTPYENRMYSLKIECGPRYPDEPPQCRFVSRINMTC 157 (226)
Q Consensus 78 r~rRL~kEL~~L~~~~~~g~is~~~~~~d~~nl~~W~~~I~Gp~~TpYeGG~f~~~I~fP~~YP~~PP~V~F~TpI~HPN 157 (226)
-.|-|.+|+++|...+|+| |.+.+.++ |+....+.|.||.||||++|.|++.+.+..|||..||+-+|+|+|||||
T Consensus 11 vik~~~kEl~~l~~~PPdG-IKV~~Nee---D~tdiqa~IeGP~GTPYa~GlFRmKL~L~kDFP~sPPKgYFlTKIFHPN 86 (223)
T KOG0423|consen 11 VIKQLAKELKSLDESPPDG-IKVVVNEE---DFTDIQADIEGPVGTPYANGLFRMKLALSKDFPHSPPKGYFLTKIFHPN 86 (223)
T ss_pred HHHHHHHHHHhcccCCCCc-eEEecChH---HhHHHHhhccCCCCCccccceeeehhhhcCCCCCCCCcceeeeeeccCC
Confidence 4578899999999999999 78777666 5888999999999999999999999999999999999999999999999
Q ss_pred eeCCCCeEEccchhhcccccCCCCCCCCCCCCHHHHHHHHHHHHhccccC
Q psy15032 158 INNTSGIVVVIMFWVMIEAKATHYPVDLKTGTPDQVYLIVCVLIRYQVDL 207 (226)
Q Consensus 158 V~~~~G~ICl~~LsiL~~w~~~~W~Pa~s~~tI~~VL~~I~sLL~~~~~~ 207 (226)
|. .||+||++ .|.. .|+|+.. |..||+.|..||-.|+.|
T Consensus 87 Va-aNGEICVN---tLKk----DW~p~LG---irHvLltikCLLI~PnPE 125 (223)
T KOG0423|consen 87 VA-ANGEICVN---TLKK----DWNPSLG---IRHVLLTIKCLLIEPNPE 125 (223)
T ss_pred cc-cCceehhh---hhhc----ccCcccc---hhhHhhhhheeeecCChH
Confidence 99 99999955 6663 7999887 999999999999988654
No 20
>KOG0428|consensus
Probab=99.82 E-value=2.1e-20 Score=162.49 Aligned_cols=114 Identities=18% Similarity=0.232 Sum_probs=96.3
Q ss_pred CccHHHHHHHHHHHhHcCCCCCcEEEEecCCCCCCcceEEEEEeCCCCCCCCCCeEEEEEEeCCCCCCCCCeeeeecccc
Q psy15032 75 VVPRNFRLLEELEHGQRGVGDGTISWGLENDDDMTLTHWTGMIIGPPRTPYENRMYSLKIECGPRYPDEPPQCRFVSRIN 154 (226)
Q Consensus 75 ~~~r~rRL~kEL~~L~~~~~~g~is~~~~~~d~~nl~~W~~~I~Gp~~TpYeGG~f~~~I~fP~~YP~~PP~V~F~TpI~ 154 (226)
+.+++|||++|.++|+ ++.+. +.+.+.+| |+++|+++|.||.||-|+||+|+.+|.||.|||++||.+-.+|+..
T Consensus 9 KnpaVkRlmkEa~El~-~Ptd~-yha~plEd---NlFEWhFtiRGp~dtdFeGGiYHGRI~lPadYPmKPPs~iLLTpNG 83 (314)
T KOG0428|consen 9 KNPAVKRLMKEAAELK-DPTDH-YHAQPLED---NLFEWHFTIRGPPDTDFEGGIYHGRIVLPADYPMKPPSIILLTPNG 83 (314)
T ss_pred cCHHHHHHHHHHHHhc-Cchhh-hhhccchh---ceeeEEEEeeCCCCCCccCceeeeeEecCCCCCCCCCeEEEEcCCC
Confidence 4568999999999999 66666 66677776 8999999999999999999999999999999999999999999543
Q ss_pred cceeeCCCCeEEccchhhcccccCCCCCCCCCCCCHHHHHHHHHHHHhc
Q psy15032 155 MTCINNTSGIVVVIMFWVMIEAKATHYPVDLKTGTPDQVYLIVCVLIRY 203 (226)
Q Consensus 155 HPNV~~~~G~ICl~~LsiL~~w~~~~W~Pa~s~~tI~~VL~~I~sLL~~ 203 (226)
..- .|-+|||+ + ..++++.|.|.|+ |+..|++|..+|-.
T Consensus 84 RFE---~nkKiCLS---I-SgyHPEtWqPSWS---iRTALlAlIgFmPt 122 (314)
T KOG0428|consen 84 RFE---VNKKICLS---I-SGYHPETWQPSWS---IRTALLALIGFMPT 122 (314)
T ss_pred cee---eCceEEEE---e-cCCCccccCcchh---HHHHHHHHHccccC
Confidence 322 34689955 3 4467899999998 99999999988754
No 21
>KOG0895|consensus
Probab=99.71 E-value=8.2e-18 Score=168.92 Aligned_cols=122 Identities=17% Similarity=0.264 Sum_probs=103.3
Q ss_pred HHHHHHHHHHhHcCCCCCcEEEEecCCCCCCcceEEEEEeCCCCCCCCCCeEEEEEEeCCCCCCCCCeeeeecc--cccc
Q psy15032 79 NFRLLEELEHGQRGVGDGTISWGLENDDDMTLTHWTGMIIGPPRTPYENRMYSLKIECGPRYPDEPPQCRFVSR--INMT 156 (226)
Q Consensus 79 ~rRL~kEL~~L~~~~~~g~is~~~~~~d~~nl~~W~~~I~Gp~~TpYeGG~f~~~I~fP~~YP~~PP~V~F~Tp--I~HP 156 (226)
.+..+.|++.|....+.| +.++..++ .|....++|.||.||||.+|.|.|+|.||++||..||.|++.+. .++|
T Consensus 853 ~~~~~~~~~~~~~~~~~~-~~vr~~e~---r~d~~~~~~~g~~~tpy~~~~f~fd~~~~~~yp~~pp~~~~~s~~~r~np 928 (1101)
T KOG0895|consen 853 AKKVQTEWKILPLSLPSG-IFVRAYED---RMDLLRAVIVGAAGTPYQDGLFFFDFQFPQDYPSSPPLVHYHSGGVRLNP 928 (1101)
T ss_pred HHHHHHHHHhhhccCCCc-eEEEechH---HHHHHHHHhhCCCCCccccceEEEEeecCCCCCCCCCceEeecCceeeCc
Confidence 455566777778888888 66666555 47778999999999999999999999999999999999999986 4899
Q ss_pred eeeCCCCeEEccchhhccccc---CCCCCCCCCCCCHHHHHHHHHHHHhccccCCCCCCCCcccCC
Q psy15032 157 CINNTSGIVVVIMFWVMIEAK---ATHYPVDLKTGTPDQVYLIVCVLIRYQVDLTDRPFQPYLSGL 219 (226)
Q Consensus 157 NV~~~~G~ICl~~LsiL~~w~---~~~W~Pa~s~~tI~~VL~~I~sLL~~~~~~~~~~~q~~~~~l 219 (226)
|+| .+|+|| |++|++|. .+-|+|.. +|.|||.+||+|+-.. +|||--.
T Consensus 929 nly-~~g~vc---~s~l~tw~g~~~e~w~~~s---~~lq~l~s~q~l~l~~--------~py~ne~ 979 (1101)
T KOG0895|consen 929 NLY-EDGKVC---LSLLNTWHGRGNEVWNPSS---SILQVLVSIQGLVLNE--------EPYFNEA 979 (1101)
T ss_pred ccc-ccccee---hhhhccccCCCccccCcch---hHHHHHHHhhhhhccc--------ccccCcc
Confidence 999 999999 77999995 56799944 5999999999999876 6777543
No 22
>KOG0896|consensus
Probab=99.71 E-value=2.9e-17 Score=131.32 Aligned_cols=131 Identities=53% Similarity=0.896 Sum_probs=114.9
Q ss_pred CCccHHHHHHHHHHHhHcCCCCCcEEEEecCCCCCCcceEEEEEeCCCCCCCCCCeEEEEEEeCCCCCCCCCeeeeeccc
Q psy15032 74 SVVPRNFRLLEELEHGQRGVGDGTISWGLENDDDMTLTHWTGMIIGPPRTPYENRMYSLKIECGPRYPDEPPQCRFVSRI 153 (226)
Q Consensus 74 ~~~~r~rRL~kEL~~L~~~~~~g~is~~~~~~d~~nl~~W~~~I~Gp~~TpYeGG~f~~~I~fP~~YP~~PP~V~F~TpI 153 (226)
+++||..||.+||++=++...+|.+++...+++|.-+..|..+|.||+.|+||+.+|.++|...++||..||.|+|.|++
T Consensus 2 ~~vPrnfrlleele~g~kg~g~~~~s~gl~d~~dmtl~rWtg~IiGPprT~yEnRiysLKI~Cgp~YPe~PP~vrf~tki 81 (138)
T KOG0896|consen 2 VKVPRNFRLLEELEEGEKGIGDGTVSWGLEDDDDMTLTRWTGTIIGPPRTMYENRIYSLKIECGPKYPELPPTVRFGTKI 81 (138)
T ss_pred CccccchhhhhhhccccccccCceeeccccCCCcceEeeeccceeCCCCcccccceeeEEEecCCCCCCCCceeEEEEEe
Confidence 46789999999999999999999999999999888889999999999999999999999999999999999999999999
Q ss_pred ccceeeCCCCeEEccchhhcccccCCCCCCCCCCCCHHHHHHHHHHHHhccccCCCCCCCC
Q psy15032 154 NMTCINNTSGIVVVIMFWVMIEAKATHYPVDLKTGTPDQVYLIVCVLIRYQVDLTDRPFQP 214 (226)
Q Consensus 154 ~HPNV~~~~G~ICl~~LsiL~~w~~~~W~Pa~s~~tI~~VL~~I~sLL~~~~~~~~~~~q~ 214 (226)
--+.|+..+|.|.-..+..|..|..+ |++..||..++-.+....+ ...+||
T Consensus 82 nm~gvn~~~g~Vd~~~i~~L~~W~~~--------y~~~~vl~~lr~~m~~~eN--~kl~qp 132 (138)
T KOG0896|consen 82 NMNGVNSSNGVVDPRDITVLARWQRS--------YSIKMVLGQLRKEMMSKEN--RKLPQP 132 (138)
T ss_pred eecccccCCCccCccccchhhccccc--------chhhHHHHhhhHHHHHHHh--hcccCC
Confidence 99999988999987667788865543 3599999999986666544 566666
No 23
>KOG0429|consensus
Probab=99.62 E-value=2.5e-15 Score=129.13 Aligned_cols=120 Identities=18% Similarity=0.145 Sum_probs=104.3
Q ss_pred cHHHHHHHHHHHhHcCCCCCcEEEEecCCCCCCcceEEEEEeCCCCCCCCCCeEEEEEEeCCCCCC--CCCeeeeecccc
Q psy15032 77 PRNFRLLEELEHGQRGVGDGTISWGLENDDDMTLTHWTGMIIGPPRTPYENRMYSLKIECGPRYPD--EPPQCRFVSRIN 154 (226)
Q Consensus 77 ~r~rRL~kEL~~L~~~~~~g~is~~~~~~d~~nl~~W~~~I~Gp~~TpYeGG~f~~~I~fP~~YP~--~PP~V~F~TpI~ 154 (226)
.....|+.|+..+.+...+| +.+.|... |-+.|.++|++..| .|.||+|+|.|.+|++||. .-|+|.|.++++
T Consensus 19 ~qey~llAEf~lV~~ekL~g-IyviPSya---n~l~WFGViFvr~G-iyaggVFRFtIliPdnfPdd~dlPrvvF~q~vf 93 (258)
T KOG0429|consen 19 LQEYALLAEFVLVCREKLDG-IYVIPSYA---NKLLWFGVIFVRKG-IYAGGVFRFTILIPDNFPDDSDLPRVVFEQSVF 93 (258)
T ss_pred HHHHHHHHHHHHHHhccCCc-eEEccccc---ccceEEEEEEEecc-cccCceEEEEEEcCccCCCcCCCCeEEeecccc
Confidence 35678999999999999999 66676665 57899999996655 9999999999999999995 469999999999
Q ss_pred cceeeCCCCeEEccchhhcccccCCCCCCCCCCCCHHHHHHHHHHHHhccccCCCC
Q psy15032 155 MTCINNTSGIVVVIMFWVMIEAKATHYPVDLKTGTPDQVYLIVCVLIRYQVDLTDR 210 (226)
Q Consensus 155 HPNV~~~~G~ICl~~LsiL~~w~~~~W~Pa~s~~tI~~VL~~I~sLL~~~~~~~~~ 210 (226)
||+|.+.++.+|++ ..+++|+++.-. |.+||..+|.+|.++.+..+.
T Consensus 94 HP~icp~skeLdl~--raf~eWRk~ehh-------iwqvL~ylqriF~dpd~si~k 140 (258)
T KOG0429|consen 94 HPLICPKSKELDLN--RAFPEWRKEEHH-------IWQVLVYLQRIFYDPDVSIDK 140 (258)
T ss_pred ccccCCCccceeHh--hhhhhhhccccH-------HHHHHHHHHHHhcCcccchhh
Confidence 99999999999976 578889887555 999999999999999887763
No 24
>KOG0895|consensus
Probab=99.59 E-value=6.6e-15 Score=148.23 Aligned_cols=141 Identities=19% Similarity=0.254 Sum_probs=115.1
Q ss_pred ecccCCCCCCCCccccccc-----cCCccHHHHHHHHHHHhHcCCCCCcEEEEecCCCCCCcceEEEEEeCCCCCCCCCC
Q psy15032 54 CFHKENYPFCTNFHCYLKL-----FSVVPRNFRLLEELEHGQRGVGDGTISWGLENDDDMTLTHWTGMIIGPPRTPYENR 128 (226)
Q Consensus 54 ~f~~~~~~~~~~~~~~~~s-----~~~~~r~rRL~kEL~~L~~~~~~g~is~~~~~~d~~nl~~W~~~I~Gp~~TpYeGG 128 (226)
.+.+.+.....+++.+... .-.....+|+++|++.+.++.++| +.+.+.+. .|...+++|.||.||||++|
T Consensus 254 ~i~kf~~~ed~~~~~~~~k~~~~k~hs~~~skrv~ke~~llskdlpEg-ifvrp~e~---RMd~I~alIig~~gtPy~~g 329 (1101)
T KOG0895|consen 254 LIPKFKLVEDKSFHHYAKKGKSSKPHSKNWSKKVAKELKLLSKDLPEG-IFVRPDEG---RMDLIKALIIGPDGTPYADG 329 (1101)
T ss_pred chhhhccccccccccccccCCCCCccchhhHHHHHHHhhhhcccCCCC-cccccccc---ccceeeeEEecCCCCCCcCC
Confidence 3344444444444444422 223357899999999999999999 55555544 58999999999999999999
Q ss_pred eEEEEEEeCCCCCCCCCeeeeecc---cccceeeCCCCeEEccchhhcccccC---CCCCCCCCCCCHHHHHHHHHHHHh
Q psy15032 129 MYSLKIECGPRYPDEPPQCRFVSR---INMTCINNTSGIVVVIMFWVMIEAKA---THYPVDLKTGTPDQVYLIVCVLIR 202 (226)
Q Consensus 129 ~f~~~I~fP~~YP~~PP~V~F~Tp---I~HPNV~~~~G~ICl~~LsiL~~w~~---~~W~Pa~s~~tI~~VL~~I~sLL~ 202 (226)
.|.|+|.||..||..||.|+++|. .+.||.| .+|+|| |++|.+|.+ +.|.|..+ ++.++|.+||.++.
T Consensus 330 lf~Fdiq~P~~yPa~pp~v~~lt~~~~R~nPNlY-n~GKVc---LslLgTwtg~~~e~wtp~~~--sl~qvL~sIQ~Li~ 403 (1101)
T KOG0895|consen 330 LFLFDIQFPDTYPAVPPHVKYLTGGGVRLNPNLY-NDGKVC---LSLLGTWTGSRREKWTPNGS--SLLQVLESIQGLIL 403 (1101)
T ss_pred ceeeEeecCCCCCCCCceeEEeeccceeecCCcc-cCceEE---eeeeeecccccccCCCcccc--chhhhhhhhhhhhc
Confidence 999999999999999999999987 4899999 899999 678999987 77888744 79999999999998
Q ss_pred cc
Q psy15032 203 YQ 204 (226)
Q Consensus 203 ~~ 204 (226)
+.
T Consensus 404 ~e 405 (1101)
T KOG0895|consen 404 NE 405 (1101)
T ss_pred cc
Confidence 76
No 25
>PF14461 Prok-E2_B: Prokaryotic E2 family B
Probab=97.88 E-value=2.9e-05 Score=62.37 Aligned_cols=72 Identities=10% Similarity=0.125 Sum_probs=57.1
Q ss_pred CCCeEEEEEEeCCCCCCCCCeeeeeccc---ccceeeCCCCeEEccchhhcccccCCCCCCCCCCCCHHHHHHHHHHHHh
Q psy15032 126 ENRMYSLKIECGPRYPDEPPQCRFVSRI---NMTCINNTSGIVVVIMFWVMIEAKATHYPVDLKTGTPDQVYLIVCVLIR 202 (226)
Q Consensus 126 eGG~f~~~I~fP~~YP~~PP~V~F~TpI---~HPNV~~~~G~ICl~~LsiL~~w~~~~W~Pa~s~~tI~~VL~~I~sLL~ 202 (226)
.|+.+.+.|.||++||..||.|....+. +=|||+ .+|.+|+- .- +-.-+.|.|.- ++.++|.....+|.
T Consensus 34 ~~~~~~l~l~~p~~FP~~pp~v~l~d~~~~~~~pHv~-~~G~LCl~--~~--~~~~D~~~P~~---~~~~~l~~a~~lL~ 105 (133)
T PF14461_consen 34 GGGPFPLRLVFPDDFPYLPPRVYLEDPKQFPLLPHVE-SDGKLCLL--DE--ELVLDPWDPEG---IIADCLERAIRLLE 105 (133)
T ss_pred CCeEEEEEEEECCcccCcCCEEEecCccccCccCeEc-CCCeEEEe--cC--CcccCccCHHH---HHHHHHHHHHHHHH
Confidence 6899999999999999999999888654 579999 79999941 11 11235678754 49999999999998
Q ss_pred ccc
Q psy15032 203 YQV 205 (226)
Q Consensus 203 ~~~ 205 (226)
+..
T Consensus 106 ~~~ 108 (133)
T PF14461_consen 106 DGL 108 (133)
T ss_pred Hhh
Confidence 653
No 26
>PF05743 UEV: UEV domain; InterPro: IPR008883 The N-terminal ubiquitin E2 variant (UEV) domain is ~145 amino acid residues in length and shows significant sequence similarity to E2 ubiquitin ligases but is unable to catalyze ubiquitin transfer as it lacks the active site cysteine that forms the transient thioester bond with the C terminus of ubiquitin (Ub). Nevertheless, at least some UEVs have retained the ability to bind Ub, and appear to act either as cofactors in ubiquitylation reactions, or as ubiquitin sensors. UEV domains also frequently contain other protein recognition motifs, and may generally serve to couple protein and Ub binding functions to facilitate the formation of multiprotein complexes [, , , ]. The UEV domain consists of a twisted four-stranded antiparallel beta-sheet having a meander topology, with four alpha-helices packed against one face of the sheet. The UEV fold is generally similar to canonical E2 ligases in the hydrophobic core and 'active site' regions, but differs significantly at both its N- and C-termini [, ]. The UEV domain is found in the eukaryotic tumour susceptibility gene 101 protein (TSG101). Altered transcripts of this gene have been detected in sporadic breast cancers and many other Homo sapiens malignancies. However, the involvement of this gene in neoplastic transformation and tumourigenesis is still elusive. TSG101 is required for normal cell function of embryonic and adult tissues but this gene is not a tumour suppressor for sporadic forms of breast cancer [].; GO: 0006464 protein modification process, 0015031 protein transport; PDB: 3R3Q_A 3R42_A 1UZX_A 3OBX_A 3OBS_A 3P9H_A 2F0R_A 3P9G_A 3OBQ_A 3OBU_A ....
Probab=97.74 E-value=0.00014 Score=57.92 Aligned_cols=81 Identities=15% Similarity=0.144 Sum_probs=53.9
Q ss_pred CcceEEEEEeCCCCCCCCCCeEE--EEEEeCCCCCCCCCeeeeeccc-----ccceeeCCCCeEEccchhhcccccCCCC
Q psy15032 109 TLTHWTGMIIGPPRTPYENRMYS--LKIECGPRYPDEPPQCRFVSRI-----NMTCINNTSGIVVVIMFWVMIEAKATHY 181 (226)
Q Consensus 109 nl~~W~~~I~Gp~~TpYeGG~f~--~~I~fP~~YP~~PP~V~F~TpI-----~HPNV~~~~G~ICl~~LsiL~~w~~~~W 181 (226)
++....++|. -.|.|..|. +.|.+|.+||.+||.|...-.. -+.+|+ .+|+|. ++.|.+|..
T Consensus 31 ~LL~L~Gtip----i~y~g~~y~iPi~Iwlp~~yP~~pP~v~v~pt~~m~I~~~~~Vd-~~G~v~---~pyL~~W~~--- 99 (121)
T PF05743_consen 31 LLLCLYGTIP----ITYKGSTYNIPICIWLPENYPYSPPIVYVRPTPSMVIKPSHHVD-SNGRVY---LPYLQNWNP--- 99 (121)
T ss_dssp EEEEEEEEEE----ECCTTCCEEEEEEEEE-TTTTTSSSEEEE-GCCTECCGGCCCB--TTSBB----SHHHHT--T---
T ss_pred eEEEEecCcc----cccCCcccceeEEEEEcccCCCCCCEEEEeCCCCCCcCCCCeEC-CCCCEe---CchhccCCC---
Confidence 4555666664 357888885 5678999999999999765332 244999 999999 789997653
Q ss_pred CCCCCCCCHHHHHHHHHHHHhcc
Q psy15032 182 PVDLKTGTPDQVYLIVCVLIRYQ 204 (226)
Q Consensus 182 ~Pa~s~~tI~~VL~~I~sLL~~~ 204 (226)
..+ ++.+++..++..|...
T Consensus 100 --~~s--~L~~lv~~l~~~F~~~ 118 (121)
T PF05743_consen 100 --PSS--NLVDLVQELQAVFSEE 118 (121)
T ss_dssp --TTS---HHHHHHHHHHCCCHS
T ss_pred --CCC--CHHHHHHHHHHHHhHc
Confidence 222 5888888888777653
No 27
>KOG0897|consensus
Probab=97.71 E-value=4.1e-05 Score=60.29 Aligned_cols=69 Identities=12% Similarity=0.104 Sum_probs=52.7
Q ss_pred EEEEEEeCCCCCCCCCeeeeecccccceeeCCCCeEEccchhhcccccCCCCCCCCCCCCHHHHHHHHHHHHhccccC
Q psy15032 130 YSLKIECGPRYPDEPPQCRFVSRINMTCINNTSGIVVVIMFWVMIEAKATHYPVDLKTGTPDQVYLIVCVLIRYQVDL 207 (226)
Q Consensus 130 f~~~I~fP~~YP~~PP~V~F~TpI~HPNV~~~~G~ICl~~LsiL~~w~~~~W~Pa~s~~tI~~VL~~I~sLL~~~~~~ 207 (226)
.-+.+.|+++||+.||.++...|+..-.-...+|+|| +.+|.. ..|+.++ +|+.++++|...+.....-
T Consensus 13 ill~~~f~~~fp~~ppf~rvv~p~~~~Gyvl~ggAIc---mellt~---qgwssay---~Ve~vi~qiaatlVkG~~r 81 (122)
T KOG0897|consen 13 ILLLDIFDDNFPFMPPFPRVVKPLEDEGYVLEGGAIC---MELLTK---QGWSSAY---EVERVIMQIAATLVKGGAR 81 (122)
T ss_pred eEeeeecccCCCCCCCcceeeeecccCCEEecchhhH---HHHHcc---ccccchh---hHHHHHHHHHHHhhcccee
Confidence 4456789999999999999888765444333789999 557774 5688644 5999999999998776443
No 28
>KOG2391|consensus
Probab=97.14 E-value=0.0024 Score=58.85 Aligned_cols=110 Identities=16% Similarity=0.110 Sum_probs=74.5
Q ss_pred HHHHHHHHHhHcCCCCCcEEEEecCCCCCCcceEEEEEeCCCCCCCCCCeEE--EEEEeCCCCCCCCCeeeeeccc----
Q psy15032 80 FRLLEELEHGQRGVGDGTISWGLENDDDMTLTHWTGMIIGPPRTPYENRMYS--LKIECGPRYPDEPPQCRFVSRI---- 153 (226)
Q Consensus 80 rRL~kEL~~L~~~~~~g~is~~~~~~d~~nl~~W~~~I~Gp~~TpYeGG~f~--~~I~fP~~YP~~PP~V~F~TpI---- 153 (226)
+.+...+.....-.| +.-+....++...+++...++|. .+|.|..|. +.|.+.+.||..||.|...-.-
T Consensus 23 ~~~l~lls~~~sL~P-~t~tf~~~Dg~s~~ll~~~GTIp----~~~~G~tYnIPV~iWlldtyP~~pP~c~VnPT~~M~i 97 (365)
T KOG2391|consen 23 QDLLNLLSSFKSLRP-KTDTFTHNDGRSRLLLQLDGTIP----VPYQGVTYNIPVIIWLLDTYPYYPPICYVNPTSTMII 97 (365)
T ss_pred HHHHHHHHhccccCc-ccceEEecCCCccchhhccCccc----ccccCCcccceEEEEecccCCCCCCeEEecCCchhhh
Confidence 344444444444333 32444555555546666666665 578888887 4567999999999999664321
Q ss_pred -ccceeeCCCCeEEccchhhcccccCCCCCCCCCCCCHHHHHHHHHHHHhccc
Q psy15032 154 -NMTCINNTSGIVVVIMFWVMIEAKATHYPVDLKTGTPDQVYLIVCVLIRYQV 205 (226)
Q Consensus 154 -~HPNV~~~~G~ICl~~LsiL~~w~~~~W~Pa~s~~tI~~VL~~I~sLL~~~~ 205 (226)
-|-+|+ .+|+|- |+.|.+| .|.-+ ++..++..+.+.|.+..
T Consensus 98 k~~~hVd-~nG~V~---LPYLh~W-----~~pss--dLv~Liq~l~a~f~~~p 139 (365)
T KOG2391|consen 98 KVHEHVD-PNGKVY---LPYLHNW-----DPPSS--DLVGLIQELIAAFSEDP 139 (365)
T ss_pred HHhhccC-CCCeEe---chhhccC-----CCccc--hHHHHHHHHHHHhcCCC
Confidence 389999 999999 8999964 44332 68888888888887653
No 29
>PF08694 UFC1: Ubiquitin-fold modifier-conjugating enzyme 1; InterPro: IPR014806 Ubiquitin-like (UBL) post-translational modifiers are covalently linked to most, if not all, target protein(s) through an enzymatic cascade analogous to ubiquitylation, consisting of E1 (activating), E2 (conjugating), and E3 (ligating) enzymes. Ubiquitin-fold modifier 1 (Ufm1) a ubiquitin-like protein is activated by a novel E1-like enzyme, Uba5, by forming a high-energy thioester bond. Activated Ufm1 is then transferred to its cognate E2-like enzyme, Ufc1, in a similar thioester linkage. This family represents the E2-like enzyme [].; PDB: 2Z6P_A 2K07_A 2Z6O_A 3EVX_D 3KPA_A.
Probab=95.85 E-value=0.0064 Score=49.86 Aligned_cols=103 Identities=12% Similarity=0.047 Sum_probs=46.6
Q ss_pred cHHHHHHHHHHHhHcC------CCCCcEEEEecCCCCCCcceEEEEEeCCCCCCCCCCe--EEEEEEeCCCCCCCCCeee
Q psy15032 77 PRNFRLLEELEHGQRG------VGDGTISWGLENDDDMTLTHWTGMIIGPPRTPYENRM--YSLKIECGPRYPDEPPQCR 148 (226)
Q Consensus 77 ~r~rRL~kEL~~L~~~------~~~g~is~~~~~~d~~nl~~W~~~I~Gp~~TpYeGG~--f~~~I~fP~~YP~~PP~V~ 148 (226)
....||..|+..|-+. .....+.+....++ +.|.+.--- .|+--. |.+++.+|..||..||.+.
T Consensus 24 ~W~~RLKEEy~aLI~Yv~~nK~~DndWF~lesn~~G----T~W~GkCW~----~h~l~kYEF~~eFdIP~tYP~t~pEi~ 95 (161)
T PF08694_consen 24 LWVQRLKEEYQALIKYVENNKENDNDWFRLESNKEG----TRWFGKCWY----IHNLLKYEFDLEFDIPVTYPTTAPEIA 95 (161)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTT---EEEEE-TTS----SEEEEEEEE----EETTEEEEEEEEEE--TTTTTS----B
T ss_pred HHHHHHHHHHHHHHHHHHhcccccCCeEEeccCCCC----CccccEEEE----EeeeeeEEEeeecCCCccCCCCCccee
Confidence 4678999999987541 11223454433332 455433210 122233 4455678999999999997
Q ss_pred eecc-cccceeeCCCCeEEccchhhcccccCCCCCCCCCCCCHHHHH
Q psy15032 149 FVSR-INMTCINNTSGIVVVIMFWVMIEAKATHYPVDLKTGTPDQVY 194 (226)
Q Consensus 149 F~Tp-I~HPNV~~~~G~ICl~~LsiL~~w~~~~W~Pa~s~~tI~~VL 194 (226)
.-.= ---.-.| .+|+|||+ ..+-.-|- ...|... |...+
T Consensus 96 lPeLdGKTaKMY-RGGkIClt-~HFkPLWa--kN~PkfG---IaHal 135 (161)
T PF08694_consen 96 LPELDGKTAKMY-RGGKICLT-DHFKPLWA--KNVPKFG---IAHAL 135 (161)
T ss_dssp -GGGTTT-SSBC-CCCBB----TTHHHHHH--CTTTT-----HHHHH
T ss_pred ccccCCchhhhh-cCceEeee-cccchhhh--hcCCchh---HHHHH
Confidence 5210 0112335 78999987 45555564 2455554 55443
No 30
>PF05773 RWD: RWD domain; InterPro: IPR006575 The RWD eukaryotic domain is found in RING finger (IPR001841 from INTERPRO) and WD repeat (IPR001680 from INTERPRO) containing proteins and DEXDc-like helicase (IPR001410 from INTERPRO) subfamily related to the ubiquitin-conjugating enzymes domain (IPR000608 from INTERPRO). ; GO: 0005515 protein binding; PDB: 2EBM_A 2EBK_A 2DAX_A 2DAW_A 2DAY_A 2DMF_A 1UKX_A 2YZ0_A.
Probab=94.33 E-value=0.21 Score=37.51 Aligned_cols=69 Identities=19% Similarity=0.167 Sum_probs=39.6
Q ss_pred HHHHHHHHHhHcCCCCCcEEEEecCCCCCCcceEEEEEe--CCCCCCCCCCeEEEEEEeCCCCCCCCCeeeeeccc
Q psy15032 80 FRLLEELEHGQRGVGDGTISWGLENDDDMTLTHWTGMII--GPPRTPYENRMYSLKIECGPRYPDEPPQCRFVSRI 153 (226)
Q Consensus 80 rRL~kEL~~L~~~~~~g~is~~~~~~d~~nl~~W~~~I~--Gp~~TpYeGG~f~~~I~fP~~YP~~PP~V~F~TpI 153 (226)
.+...|+..|+.-=++. + ...... +-..+.+.+. ....+.-....+.+.+.||++||..+|.|...++.
T Consensus 4 e~~~~EieaL~sIy~~~-~-~~~~~~---~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~p~~YP~~~P~i~l~~~~ 74 (113)
T PF05773_consen 4 EQQEEEIEALQSIYPDD-F-IEIESK---SPPSLEVKLDESSSSFESSSFPSVTLHFTLPPGYPESPPKISLESPK 74 (113)
T ss_dssp HHHHHHHHHHHHHSSSS-E-SSSTSS---SSEEEEEEE--CEECCTTTTSEEEEEEEEE-SSTTSS--EEEEEEES
T ss_pred HHHHHHHHHHHHHcCCC-c-cccccC---CCCceeeeecccccccccccceeEEEEEeCCCcCCCcCCEEEEEcCC
Confidence 46678888888643333 2 011111 2344555552 12333344557899999999999999999887754
No 31
>PF14462 Prok-E2_E: Prokaryotic E2 family E
Probab=93.33 E-value=0.99 Score=36.18 Aligned_cols=95 Identities=16% Similarity=0.221 Sum_probs=60.8
Q ss_pred EEEEecCCCCCCcceEEEEEeC--CCCCCCCCCeEEEEEEeCCCCCCCCCeeeeecccccceeeCCC-CeE--Eccchhh
Q psy15032 98 ISWGLENDDDMTLTHWTGMIIG--PPRTPYENRMYSLKIECGPRYPDEPPQCRFVSRINMTCINNTS-GIV--VVIMFWV 172 (226)
Q Consensus 98 is~~~~~~d~~nl~~W~~~I~G--p~~TpYeGG~f~~~I~fP~~YP~~PP~V~F~TpI~HPNV~~~~-G~I--Cl~~Lsi 172 (226)
+.++...++. ..|.+ |.| .+.+.|.+..-.+-|.+|+.||..+|.+-+..| -+...+ |.| |-+....
T Consensus 14 ~~~E~v~eg~---~~~li-i~~~~LP~G~y~~~~~dili~iP~gYP~~~~DmfY~~P----~L~~~~G~~iP~~~~~~~~ 85 (122)
T PF14462_consen 14 LRWETVTEGG---RRWLI-IKGYPLPEGKYNHNEVDILILIPPGYPDAPLDMFYVYP----PLKLADGGPIPNAAEVTQT 85 (122)
T ss_pred ceEEEEEeCC---ccEEE-EeCCcCCCCccCccceEEEEECCCCCCCCCCCcEEECC----ceEccCCCcCCchhcchhh
Confidence 5555555542 44654 554 556679999999999999999999988876654 332233 334 4332222
Q ss_pred cc--cc-----cCCCCCCCCCCCCHHHHHHHHHHHHh
Q psy15032 173 MI--EA-----KATHYPVDLKTGTPDQVYLIVCVLIR 202 (226)
Q Consensus 173 L~--~w-----~~~~W~Pa~s~~tI~~VL~~I~sLL~ 202 (226)
+. +| +...|.|... ++.+.|.-|...|.
T Consensus 86 ~~G~~wQrWSRH~~~W~P~~D--~l~T~l~~v~~~L~ 120 (122)
T PF14462_consen 86 FDGRTWQRWSRHNNPWRPGVD--DLWTHLARVEHALA 120 (122)
T ss_pred cCCeeeeeecCCCCCCCCCCC--cHHHHHHHHHHHHh
Confidence 22 12 3456888665 88888888877664
No 32
>smart00591 RWD domain in RING finger and WD repeat containing proteins and DEXDc-like helicases subfamily related to the UBCc domain.
Probab=90.89 E-value=1.3 Score=32.87 Aligned_cols=26 Identities=23% Similarity=0.485 Sum_probs=22.3
Q ss_pred CCeEEEEEEeCCCCCCCCCeeeeecc
Q psy15032 127 NRMYSLKIECGPRYPDEPPQCRFVSR 152 (226)
Q Consensus 127 GG~f~~~I~fP~~YP~~PP~V~F~Tp 152 (226)
.-.+.+.+.||++||..+|.|.+.+.
T Consensus 40 ~~~~~l~~~~p~~YP~~~P~i~~~~~ 65 (107)
T smart00591 40 YVSLTLQVKLPENYPDEAPPISLLNS 65 (107)
T ss_pred ceEEEEEEECCCCCCCCCCCeEEECC
Confidence 34588999999999999999988764
No 33
>KOG3357|consensus
Probab=90.22 E-value=0.4 Score=38.96 Aligned_cols=81 Identities=15% Similarity=0.224 Sum_probs=47.1
Q ss_pred cHHHHHHHHHHHhHcCCCCCcEEEEecCCCCCCcceEEEEEeCCCCCCCCCCe----------EEEEEEeCCCCCCCCCe
Q psy15032 77 PRNFRLLEELEHGQRGVGDGTISWGLENDDDMTLTHWTGMIIGPPRTPYENRM----------YSLKIECGPRYPDEPPQ 146 (226)
Q Consensus 77 ~r~rRL~kEL~~L~~~~~~g~is~~~~~~d~~nl~~W~~~I~Gp~~TpYeGG~----------f~~~I~fP~~YP~~PP~ 146 (226)
....||..|++.|-...... .+++ ..|.-+=.-++||-|-|.+ |.+++.+|-.||-..|.
T Consensus 27 ~wvqrlkeey~sli~yvqnn-------k~~d---~dwfrlesn~egtrwfgkcwy~hnllkyefdvefdipityp~tape 96 (167)
T KOG3357|consen 27 LWVQRLKEEYQSLIAYVQNN-------KSND---NDWFRLESNKEGTRWFGKCWYVHNLLKYEFDVEFDIPITYPTTAPE 96 (167)
T ss_pred HHHHHHHHHHHHHHHHHHhC-------cccC---CcceEeccCccccceehhhhHhhhhhhheeeeeeccccccCCCCcc
Confidence 36789999999986532111 1111 2244333457777776653 34555679999999998
Q ss_pred eeeeccc-ccceeeCCCCeEEcc
Q psy15032 147 CRFVSRI-NMTCINNTSGIVVVI 168 (226)
Q Consensus 147 V~F~TpI-~HPNV~~~~G~ICl~ 168 (226)
+..---- ----.| .+|+|||.
T Consensus 97 ialpeldgktakmy-rggkiclt 118 (167)
T KOG3357|consen 97 IALPELDGKTAKMY-RGGKICLT 118 (167)
T ss_pred ccccccCchhhhhh-cCceEeec
Confidence 8642100 011234 68999954
No 34
>PF14457 Prok-E2_A: Prokaryotic E2 family A
Probab=88.24 E-value=0.73 Score=38.52 Aligned_cols=63 Identities=11% Similarity=0.059 Sum_probs=46.6
Q ss_pred EEEEeCCCCCCCCCeeeeecccc---cceeeCCC-----CeEEccchhhcccccCCCCCCCCCCCCHHHHHHHHHHHHhc
Q psy15032 132 LKIECGPRYPDEPPQCRFVSRIN---MTCINNTS-----GIVVVIMFWVMIEAKATHYPVDLKTGTPDQVYLIVCVLIRY 203 (226)
Q Consensus 132 ~~I~fP~~YP~~PP~V~F~TpI~---HPNV~~~~-----G~ICl~~LsiL~~w~~~~W~Pa~s~~tI~~VL~~I~sLL~~ 203 (226)
+.|.|+.+||..+|.|.+.-+.| +||++ .. ..+|+- ...|. .|.+.++ ++.+|..|..-|.+
T Consensus 57 ~~i~~~~~~~~~~P~v~~lR~dFP~~lpH~~-~~~~~~p~~lCl~----~~~~~--e~~~~~g---~~~~l~rl~~Wl~~ 126 (162)
T PF14457_consen 57 VAIVFPPDSPLSAPEVPALRKDFPGNLPHQN-PGPEGEPVSLCLY----EGPWS--EWRPSWG---PEGFLDRLFDWLRD 126 (162)
T ss_pred EEEEecCCCCCCCccchhhHhhCCCCCCccC-CCCCCCCccceEe----cCCHH--HhhhccC---HHHHHHHHHHHHHH
Confidence 56899999999999888776543 58887 44 689943 23332 4666664 99999999988876
Q ss_pred c
Q psy15032 204 Q 204 (226)
Q Consensus 204 ~ 204 (226)
.
T Consensus 127 a 127 (162)
T PF14457_consen 127 A 127 (162)
T ss_pred H
Confidence 4
No 35
>KOG0309|consensus
Probab=56.05 E-value=45 Score=34.67 Aligned_cols=41 Identities=15% Similarity=0.325 Sum_probs=28.5
Q ss_pred ceEEEEEeCCCCCCCCCC-eEEEEEEeCCCCCCC-CCeeeeecc
Q psy15032 111 THWTGMIIGPPRTPYENR-MYSLKIECGPRYPDE-PPQCRFVSR 152 (226)
Q Consensus 111 ~~W~~~I~Gp~~TpYeGG-~f~~~I~fP~~YP~~-PP~V~F~Tp 152 (226)
.+-.+.+.||-..- +|= ..++.|.||.+||.+ +|+.+|..+
T Consensus 449 Rsctvsln~p~~~~-d~y~flrm~V~FP~nYPn~a~P~Fq~e~~ 491 (1081)
T KOG0309|consen 449 RSCTVSLNCPNHRV-DDYIFLRMLVKFPANYPNNAAPSFQFENP 491 (1081)
T ss_pred ceEEEEecCCCCcc-ccceeEEEEEeccccCCCCCCCceEEecC
Confidence 44566777765433 222 247889999999996 699998754
No 36
>KOG4018|consensus
Probab=44.09 E-value=19 Score=31.51 Aligned_cols=20 Identities=30% Similarity=0.532 Sum_probs=18.4
Q ss_pred eEEEEEEeCCCCCCCCCeee
Q psy15032 129 MYSLKIECGPRYPDEPPQCR 148 (226)
Q Consensus 129 ~f~~~I~fP~~YP~~PP~V~ 148 (226)
.+.+.+.++++||.++|-+.
T Consensus 50 ~~~l~~s~tEnYPDe~Pli~ 69 (215)
T KOG4018|consen 50 SFILVFSLTENYPDEAPLIE 69 (215)
T ss_pred cEEEEEEccCCCCCCCccee
Confidence 78899999999999999993
No 37
>cd00421 intradiol_dioxygenase Intradiol dioxygenases catalyze the critical ring-cleavage step in the conversion of catecholate derivatives to citric acid cycle intermediates. This family contains catechol 1,2-dioxygenases and protocatechuate 3,4-dioxygenases which are mononuclear non-heme iron enzymes that catalyze the oxygenation of catecholates to aliphatic acids via the cleavage of aromatic rings. The members are intradiol-cleaving enzymes which break the catechol C1-C2 bond and utilize Fe3+, as opposed to the extradiol-cleaving enzymes which break the C2-C3 or C1-C6 bond and utilize Fe2+ and Mn+. Catechol 1,2-dioxygenases are mostly homodimers with one catalytic ferric ion per monomer. Protocatechuate 3,4-dioxygenases form more diverse oligomers.
Probab=40.76 E-value=35 Score=27.56 Aligned_cols=25 Identities=24% Similarity=0.503 Sum_probs=22.8
Q ss_pred CCeEEEEEEeCCCCC-CCCCeeeeec
Q psy15032 127 NRMYSLKIECGPRYP-DEPPQCRFVS 151 (226)
Q Consensus 127 GG~f~~~I~fP~~YP-~~PP~V~F~T 151 (226)
.|.|.|.-.+|--|| ..||.|+|..
T Consensus 65 ~G~y~f~ti~Pg~Y~~~R~~HiH~~V 90 (146)
T cd00421 65 DGRYRFRTIKPGPYPIGRPPHIHFKV 90 (146)
T ss_pred CcCEEEEEEcCCCCCCCCCCEEEEEE
Confidence 488999999999999 9999999874
No 38
>PF09765 WD-3: WD-repeat region; InterPro: IPR019162 This entry represents a region of approximately 100 residues containing three WD repeats and six cysteine residues- possibly as three cysteine-bridges associated with FancL. FancL is the ubiquitin ligase protein that mediates ubiquitination of FancD2, a key step in the DNA damage pathway [, ]. FancL belongs to the multisubunit Fanconi anemia (FA) complex, which is composed of subunits: FancA, FancB, FancC, FancE, FancF, FancG, FancL/PHF9 and FancM. The WD repeats are required for interaction of FancL with other subunits of the FA complex []. In humans defects in FancL are a cause of Fanconi anemia (FA) [MIM:227650], and the FA complex is not found in FA patients. FA is a genetically heterogeneous, autosomal recessive disorder characterised by progressive pancytopenia, a diverse assortment of congenital malformations, and a predisposition to the development of malignancies. At the cellular level it is associated with hypersensitivity to DNA-damaging agents, chromosomal instability (increased chromosome breakage), and defective DNA repair.; PDB: 3ZQS_B 3K1L_A.
Probab=40.60 E-value=82 Score=28.71 Aligned_cols=91 Identities=18% Similarity=0.184 Sum_probs=56.2
Q ss_pred cHHHHHHHHHHHhHcCCCCCcEEEEecCCCCCCcceEEEEEeCCCCCCCCCCeEEEEEEeCCCCCCCCCeeeeecccccc
Q psy15032 77 PRNFRLLEELEHGQRGVGDGTISWGLENDDDMTLTHWTGMIIGPPRTPYENRMYSLKIECGPRYPDEPPQCRFVSRINMT 156 (226)
Q Consensus 77 ~r~rRL~kEL~~L~~~~~~g~is~~~~~~d~~nl~~W~~~I~Gp~~TpYeGG~f~~~I~fP~~YP~~PP~V~F~TpI~HP 156 (226)
..-.+|.+|+.++..+.. +.+...+ ++...++.+.... ....++|.+|.+||.++|.+..--|+
T Consensus 99 ~~ys~ll~EIe~IGW~kl---~~i~~d~----~ls~i~l~~~D~~------R~H~l~l~l~~~yp~~~p~~~~~~P~--- 162 (291)
T PF09765_consen 99 QYYSNLLKEIEAIGWDKL---VQIQFDD----DLSTIKLKIFDSS------RQHYLELKLPSNYPFEPPSCSLDLPI--- 162 (291)
T ss_dssp GGC-CHHHHHHHHHCGCC---EEEEE-C----CCSEEEEEEETTC------EEEEEEEETTTTTTTSEEEECS-TTS---
T ss_pred HHHHHHHHHHHHhccccc---eEEecCC----CccEEEEEEEcCC------ceEEEEEEECCCCCCCCceeeCCCCc---
Confidence 355789999999887642 3333232 4788888887322 35779999999999999976432211
Q ss_pred eeeCCCCeEEccchhhcccccCCCCCCCCCCCCHHHHHHHHHHHHhcc
Q psy15032 157 CINNTSGIVVVIMFWVMIEAKATHYPVDLKTGTPDQVYLIVCVLIRYQ 204 (226)
Q Consensus 157 NV~~~~G~ICl~~LsiL~~w~~~~W~Pa~s~~tI~~VL~~I~sLL~~~ 204 (226)
.+-- .|.|..+ ++.+|+..++..+..-
T Consensus 163 --------------~~~~-----~w~~~~s--sL~~v~~qF~~~le~l 189 (291)
T PF09765_consen 163 --------------PFSL-----SWSPSQS--SLKDVVQQFQEALESL 189 (291)
T ss_dssp ---------------HHH-----HHHCHT---SHHHHHHHHHHHHHHT
T ss_pred --------------chhh-----hhccccc--CHHHHHHHHHHHHHHH
Confidence 1111 2444111 4888888887777654
No 39
>smart00340 HALZ homeobox associated leucin zipper.
Probab=39.39 E-value=25 Score=23.17 Aligned_cols=16 Identities=25% Similarity=0.177 Sum_probs=13.1
Q ss_pred cHHHHHHHHHHHhHcC
Q psy15032 77 PRNFRLLEELEHGQRG 92 (226)
Q Consensus 77 ~r~rRL~kEL~~L~~~ 92 (226)
..++||++|+++|..-
T Consensus 19 eeNrRL~ke~~eLral 34 (44)
T smart00340 19 EENRRLQKEVQELRAL 34 (44)
T ss_pred HHHHHHHHHHHHHHhc
Confidence 3579999999999864
No 40
>PF06113 BRE: Brain and reproductive organ-expressed protein (BRE); InterPro: IPR010358 This family consists of several eukaryotic brain and reproductive organ-expressed (BRE) proteins. BRE is a putative stress-modulating gene, found able to down-regulate TNF-alpha-induced-NF-kappaB activation upon over expression. A total of six isoforms are produced by alternative splicing predominantly at either end of the gene. Compared to normal cells, immortalised human cell lines uniformly express higher levels of BRE. Peripheral blood monocytes respond to LPS by down-regulating the expression of all the BRE isoforms. It is thought that the function of BRE and its isoforms is to regulate peroxisomal activities [].
Probab=39.01 E-value=71 Score=29.88 Aligned_cols=64 Identities=13% Similarity=0.165 Sum_probs=43.5
Q ss_pred CCCCCeEEEEEEeCCCCCCCCCeeeeec-ccccceeeCCCCeEEccchhhcccccCCCCCCCCCCCCHHHHHHHHHHHHh
Q psy15032 124 PYENRMYSLKIECGPRYPDEPPQCRFVS-RINMTCINNTSGIVVVIMFWVMIEAKATHYPVDLKTGTPDQVYLIVCVLIR 202 (226)
Q Consensus 124 pYeGG~f~~~I~fP~~YP~~PP~V~F~T-pI~HPNV~~~~G~ICl~~LsiL~~w~~~~W~Pa~s~~tI~~VL~~I~sLL~ 202 (226)
||.|-..+-+|.|-..||..||-+.|.. .-|+|... .++.|.+|... . +..+..++..+...-.
T Consensus 61 Py~~~~l~W~viFd~~~p~~pPDfiF~eD~~F~pd~s---------~l~~L~~Wd~~--d----p~~Ll~li~EL~~~Y~ 125 (333)
T PF06113_consen 61 PYCGEYLKWDVIFDAQYPEFPPDFIFGEDDNFLPDPS---------KLPSLVNWDPS--D----PNCLLNLISELRQLYK 125 (333)
T ss_pred eccCCEEEEEEEEcCCCCCCCCCEEeCCCcCcCCChh---------hcchhhcCCCC--C----chHHHHHHHHHHHHHH
Confidence 5888889999999999999999999973 34788432 13457765422 2 1236666666655443
No 41
>cd03457 intradiol_dioxygenase_like Intradiol dioxygenase supgroup. Intradiol dioxygenases catalyze the critical ring-cleavage step in the conversion of catecholate derivatives to citric acid cycle intermediates. They break the catechol C1-C2 bond and utilize Fe3+, as opposed to the extradiol-cleaving enzymes which break the C2-C3 or C1-C6 bond and utilize Fe2+ and Mn+. The family contains catechol 1,2-dioxygenases and protocatechuate 3,4-dioxygenases. The specific function of this subgroup is unknown.
Probab=37.04 E-value=41 Score=28.68 Aligned_cols=26 Identities=12% Similarity=0.229 Sum_probs=23.4
Q ss_pred CCCeEEEEEEeCCCCCCCCCeeeeec
Q psy15032 126 ENRMYSLKIECGPRYPDEPPQCRFVS 151 (226)
Q Consensus 126 eGG~f~~~I~fP~~YP~~PP~V~F~T 151 (226)
+.|.|.|+=.+|--||..+|.|+|.-
T Consensus 85 ~~G~~~F~TI~PG~Y~gR~~HIH~~V 110 (188)
T cd03457 85 ADGVVTFTTIFPGWYPGRATHIHFKV 110 (188)
T ss_pred CCccEEEEEECCCCCCCCCceEEEEE
Confidence 35889999999999999999999975
No 42
>PF06113 BRE: Brain and reproductive organ-expressed protein (BRE); InterPro: IPR010358 This family consists of several eukaryotic brain and reproductive organ-expressed (BRE) proteins. BRE is a putative stress-modulating gene, found able to down-regulate TNF-alpha-induced-NF-kappaB activation upon over expression. A total of six isoforms are produced by alternative splicing predominantly at either end of the gene. Compared to normal cells, immortalised human cell lines uniformly express higher levels of BRE. Peripheral blood monocytes respond to LPS by down-regulating the expression of all the BRE isoforms. It is thought that the function of BRE and its isoforms is to regulate peroxisomal activities [].
Probab=35.04 E-value=45 Score=31.17 Aligned_cols=27 Identities=15% Similarity=0.328 Sum_probs=22.6
Q ss_pred CeEEEEEEeCCCCCCCCCeeeeeccccc
Q psy15032 128 RMYSLKIECGPRYPDEPPQCRFVSRINM 155 (226)
Q Consensus 128 G~f~~~I~fP~~YP~~PP~V~F~TpI~H 155 (226)
-.|-++|.+|..||...|.+.|.+ +||
T Consensus 306 F~flvHi~Lp~~FP~~qP~ltlqS-~yH 332 (333)
T PF06113_consen 306 FTFLVHISLPIQFPKDQPSLTLQS-VYH 332 (333)
T ss_pred eEEEEEEeccCCCCCcCCeEEEEe-ecc
Confidence 347778899999999999999987 555
No 43
>TIGR03737 PRTRC_B PRTRC system protein B. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. This protein family is designated protein B.
Probab=31.11 E-value=65 Score=28.52 Aligned_cols=17 Identities=6% Similarity=0.157 Sum_probs=13.1
Q ss_pred cccccc---eeeCCCCeEEcc
Q psy15032 151 SRINMT---CINNTSGIVVVI 168 (226)
Q Consensus 151 TpI~HP---NV~~~~G~ICl~ 168 (226)
|++||+ ||+ .+|+||+.
T Consensus 131 T~L~~aPffNV~-~~G~VC~G 150 (228)
T TIGR03737 131 TKLYQAPLFNVW-SNGEICAG 150 (228)
T ss_pred CeeccCCcCccC-CCCeEeeC
Confidence 556664 999 89999954
No 44
>cd03459 3,4-PCD Protocatechuate 3,4-dioxygenase (3,4-PCD) catalyzes the oxidative ring cleavage of 3,4-dihydroxybenzoate to produce beta-carboxy-cis,cis-muconate. 3,4-PCDs are large aggregates of 12 protomers, each composed of an alpha- and beta-subunit and an Fe3+ ion bound in the beta-subunit at the alpha-beta-subunit interface. 3,4-PCD is a member of the aromatic dioxygenases which are non-heme iron intradiol-cleaving enzymes that break the C1-C2 bond and utilize Fe3+.
Probab=30.04 E-value=64 Score=26.68 Aligned_cols=25 Identities=16% Similarity=0.258 Sum_probs=22.3
Q ss_pred CCeEEEEEEeCCCCC-----CCCCeeeeec
Q psy15032 127 NRMYSLKIECGPRYP-----DEPPQCRFVS 151 (226)
Q Consensus 127 GG~f~~~I~fP~~YP-----~~PP~V~F~T 151 (226)
.|.|.|.-.+|--|| ..||.|+|.-
T Consensus 72 ~G~~~f~Ti~Pg~Y~~p~~~~R~~HIH~~V 101 (158)
T cd03459 72 DGRYRFRTIKPGAYPWRNGAWRAPHIHVSV 101 (158)
T ss_pred CCcEEEEEECCCCcCCCCCCCcCCEEEEEE
Confidence 478999999999999 8999999874
No 45
>PF14460 Prok-E2_D: Prokaryotic E2 family D
Probab=22.71 E-value=39 Score=28.20 Aligned_cols=18 Identities=11% Similarity=-0.016 Sum_probs=14.0
Q ss_pred eccccc---ceeeCCCCeEEcc
Q psy15032 150 VSRINM---TCINNTSGIVVVI 168 (226)
Q Consensus 150 ~TpI~H---PNV~~~~G~ICl~ 168 (226)
.|++|| +||+ .+|+||..
T Consensus 89 ~T~Ly~aPf~NV~-~~g~vC~G 109 (175)
T PF14460_consen 89 DTPLYHAPFFNVY-SNGSVCWG 109 (175)
T ss_pred CCeeEeCCccccC-CCCcEeeC
Confidence 466676 5999 89999954
No 46
>PF08483 IstB_IS21_ATP: IstB-like ATP binding N-terminal; InterPro: IPR013690 This bacterial domain is found to the N terminus of the IPR002611 from INTERPRO-like ATP binding domain in proteins which are putative transposase subunits [].
Probab=22.05 E-value=10 Score=23.05 Aligned_cols=18 Identities=28% Similarity=0.230 Sum_probs=14.6
Q ss_pred CCCCCCcccCCCCCCCCC
Q psy15032 209 DRPFQPYLSGLPDSEWLA 226 (226)
Q Consensus 209 ~~~~q~~~~~l~~~~~~~ 226 (226)
+...||....|+++|||+
T Consensus 2 eQ~~~p~~~~LsFeERl~ 19 (30)
T PF08483_consen 2 EQQEQPDTQELSFEERLG 19 (30)
T ss_pred hhhhCcchhhcCHHHHHH
Confidence 455789999999999974
No 47
>TIGR02423 protocat_alph protocatechuate 3,4-dioxygenase, alpha subunit. This model represents the alpha chain of protocatechuate 3,4-dioxygenase. The most closely related family outside this family is that of the beta chain (TIGR02422), typically encoded in an adjacent locus. This enzyme acts in the degradation of aromatic compounds by way of p-hydroxybenzoate to succinate and acetyl-CoA.
Probab=21.64 E-value=1.1e+02 Score=26.25 Aligned_cols=25 Identities=12% Similarity=0.240 Sum_probs=21.5
Q ss_pred CCeEEEEEEeCCCCCC-----CCCeeeeec
Q psy15032 127 NRMYSLKIECGPRYPD-----EPPQCRFVS 151 (226)
Q Consensus 127 GG~f~~~I~fP~~YP~-----~PP~V~F~T 151 (226)
.|.|.|.-..|-.||. .||.|+|.-
T Consensus 96 ~G~y~f~TI~Pg~Yp~~~g~~R~~HiH~~V 125 (193)
T TIGR02423 96 SGEFTFETVKPGAVPDRDGVLQAPHINVSV 125 (193)
T ss_pred CCCEEEEEEcCCCcCCCCCCCcCCeEEEEE
Confidence 4779999999999998 889888864
No 48
>COG4464 CapC Capsular polysaccharide biosynthesis protein [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=21.01 E-value=62 Score=28.83 Aligned_cols=18 Identities=39% Similarity=0.676 Sum_probs=14.7
Q ss_pred hhhHHHHHHhhcceeeee
Q psy15032 14 FAPYLLYQIQMKGIKKIT 31 (226)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~ 31 (226)
+|--|+|++|+|||+-|-
T Consensus 117 ya~~lf~elq~kGi~PII 134 (254)
T COG4464 117 YADQLFFELQSKGIIPII 134 (254)
T ss_pred hHHHHHHHHHHCCceeee
Confidence 455689999999998773
No 49
>cd03463 3,4-PCD_alpha Protocatechuate 3,4-dioxygenase (3,4-PCD) , alpha subunit. 3,4-PCD catalyzes the oxidative ring cleavage of 3,4-dihydroxybenzoate to produce beta-carboxy-cis,cis-muconate. 3,4-PCDs are large aggregates of 12 protomers, each composed of an alpha- and beta-subunit and an Fe3+ ion bound in the beta-subunit at the alpha-subunit-beta-subunit interface. 3,4-PCD is a member of the aromatic dioxygenases which are non-heme iron intradiol-cleaving enzymes that break the C1-C2 bond and utilize Fe3+.
Probab=20.35 E-value=1.2e+02 Score=25.73 Aligned_cols=25 Identities=12% Similarity=0.174 Sum_probs=20.7
Q ss_pred CCeEEEEEEeCCCCCC-----CCCeeeeec
Q psy15032 127 NRMYSLKIECGPRYPD-----EPPQCRFVS 151 (226)
Q Consensus 127 GG~f~~~I~fP~~YP~-----~PP~V~F~T 151 (226)
.|.|.|.-.+|--||. .||.|+|.-
T Consensus 92 ~G~y~F~Ti~Pg~Y~~~~g~~R~~HIH~~V 121 (185)
T cd03463 92 DGRFSFTTVKPGAVPGRDGAGQAPHINVWV 121 (185)
T ss_pred CCCEEEEEEcCCCcCCCCCCCcCCeEEEEE
Confidence 3789999999999995 888888763
Done!