RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy15032
(226 letters)
>1jat_B Ubiquitin-conjugating enzyme variant MMS2; UEV, ligase; 1.60A
{Saccharomyces cerevisiae} SCOP: d.20.1.1 PDB: 2gmi_B
Length = 138
Score = 143 bits (364), Expect = 3e-44
Identities = 53/92 (57%), Positives = 71/92 (77%)
Query: 74 SVVPRNFRLLEELEHGQRGVGDGTISWGLENDDDMTLTHWTGMIIGPPRTPYENRMYSLK 133
S VPRNFRLLEELE G++G G + S+GL + DD+T+T W G I+GPP + +ENR+YSL
Sbjct: 3 SKVPRNFRLLEELEKGEKGFGPESCSYGLADSDDITMTKWNGTILGPPHSNHENRIYSLS 62
Query: 134 IECGPRYPDEPPQCRFVSRINMTCINNTSGIV 165
I+CGP YPD PP+ F+S+IN+ C+N T+G V
Sbjct: 63 IDCGPNYPDSPPKVTFISKINLPCVNPTTGEV 94
>2q0v_A Ubiquitin-conjugating enzyme E2, putative; malaria, structural G
structural genomics consortium, SGC, ligase; 2.40A
{Plasmodium falciparum} PDB: 3e95_C
Length = 156
Score = 141 bits (358), Expect = 4e-43
Identities = 44/91 (48%), Positives = 64/91 (70%)
Query: 74 SVVPRNFRLLEELEHGQRGVGDGTISWGLENDDDMTLTHWTGMIIGPPRTPYENRMYSLK 133
+VPR+FRLL+ELE GQ+G +S+GLE+ DD+TL++W+ I G P T +ENR+YSL
Sbjct: 18 GIVPRSFRLLDELERGQKGNVSEGVSFGLESADDITLSNWSCTIFGQPGTVFENRIYSLT 77
Query: 134 IECGPRYPDEPPQCRFVSRINMTCINNTSGI 164
I C YPD PP +F ++I M+C++N +
Sbjct: 78 IFCDDNYPDSPPTVKFDTKIEMSCVDNCGRV 108
>2hlw_A Ubiquitin-conjugating enzyme E2 variant 1; ubiquitin-conjugating
enzyme variant, UBC13, HUBC13, polyubiquitination,
ligase, signaling protein; NMR {Homo sapiens}
Length = 170
Score = 142 bits (359), Expect = 4e-43
Identities = 68/91 (74%), Positives = 82/91 (90%)
Query: 75 VVPRNFRLLEELEHGQRGVGDGTISWGLENDDDMTLTHWTGMIIGPPRTPYENRMYSLKI 134
VPRNFRLLEELE GQ+GVGDGT+SWGLE+D+DMTLT WTGMIIGPPRT YENR+YSLKI
Sbjct: 33 KVPRNFRLLEELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTIYENRIYSLKI 92
Query: 135 ECGPRYPDEPPQCRFVSRINMTCINNTSGIV 165
ECGP+YP+ PP RFV++INM +N+++G+V
Sbjct: 93 ECGPKYPEAPPFVRFVTKINMNGVNSSNGVV 123
>2a4d_A Ubiquitin-conjugating enzyme E2 variant 1; alternative splicing,
nuclear protein, UBL conjugation pathway,ubiquitin,
ligase, structural genomics; 1.69A {Homo sapiens} SCOP:
d.20.1.1 PDB: 2c2v_C 1j7d_A 1j74_A 1zgu_A
Length = 160
Score = 139 bits (351), Expect = 5e-42
Identities = 68/90 (75%), Positives = 82/90 (91%)
Query: 76 VPRNFRLLEELEHGQRGVGDGTISWGLENDDDMTLTHWTGMIIGPPRTPYENRMYSLKIE 135
VPRNFRLLEELE GQ+GVGDGT+SWGLE+D+DMTLT WTGMIIGPPRT YENR+YSLKIE
Sbjct: 24 VPRNFRLLEELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTIYENRIYSLKIE 83
Query: 136 CGPRYPDEPPQCRFVSRINMTCINNTSGIV 165
CGP+YP+ PP RFV++INM +N+++G+V
Sbjct: 84 CGPKYPEAPPFVRFVTKINMNGVNSSNGVV 113
>3k9o_A Ubiquitin-conjugating enzyme E2 K; E2-25K, complex structure,
ATP-binding, isopeptide BO ligase, nucleotide-binding,
UBL conjugation pathway; 1.80A {Homo sapiens} PDB:
3k9p_A 1yla_A 2o25_A
Length = 201
Score = 70.1 bits (172), Expect = 5e-15
Identities = 27/86 (31%), Positives = 43/86 (50%), Gaps = 4/86 (4%)
Query: 78 RNFRLLEELEHGQRGVGDGTISWGLENDDDMTLTHWTGMIIGPPRTPYENRMYSLKIECG 137
R R +E+ + + I L +++ T G I GPP TPYE Y L+I+
Sbjct: 9 RIKREFKEVLKSEETSKNQ-IKVDLVDEN---FTELRGEIAGPPDTPYEGGRYQLEIKIP 64
Query: 138 PRYPDEPPQCRFVSRINMTCINNTSG 163
YP PP+ RF+++I I++ +G
Sbjct: 65 ETYPFNPPKVRFITKIWHPNISSVTG 90
>3e46_A Ubiquitin-conjugating enzyme E2-25 kDa; huntington interacting,
ligase, alternative splicing, cytoplasm, UBL
conjugation, UBL conjugation pathway; 1.86A {Homo
sapiens} SCOP: a.5.2.1 d.20.1.1 PDB: 3f92_A*
Length = 253
Score = 70.7 bits (173), Expect = 6e-15
Identities = 27/86 (31%), Positives = 43/86 (50%), Gaps = 4/86 (4%)
Query: 78 RNFRLLEELEHGQRGVGDGTISWGLENDDDMTLTHWTGMIIGPPRTPYENRMYSLKIECG 137
R R +E+ + + I L +++ T G I GPP TPYE Y L+I+
Sbjct: 61 RIKREFKEVLKSEETSKNQ-IKVDLVDEN---FTELRGEIAGPPDTPYEGGRYQLEIKIP 116
Query: 138 PRYPDEPPQCRFVSRINMTCINNTSG 163
YP PP+ RF+++I I++ +G
Sbjct: 117 ETYPFNPPKVRFITKIWHPNISSVTG 142
>2bep_A Ubiquitin-conjugating enzyme E2-25 kDa; ligase, E2 conjugating
enzyme, protein degradatio structural proteomics in
europe, spine; 1.8A {Bos taurus} SCOP: d.20.1.1 PDB:
2bf8_A
Length = 159
Score = 68.1 bits (167), Expect = 1e-14
Identities = 28/89 (31%), Positives = 44/89 (49%), Gaps = 10/89 (11%)
Query: 78 RNFRLLEELEHGQRGVGDGTISWGLENDDDMTLTHWTGMIIGPPRTPYENRMYSLKIECG 137
R R +E+ + + I L +++ T G I GPP TPYE Y L+I+
Sbjct: 12 RIKREFKEVLKSEETSKNQ-IKVDLVDEN---FTELRGEIAGPPDTPYEGGRYQLEIKIP 67
Query: 138 PRYPDEPPQCRFVSRI---NMTCINNTSG 163
YP PP+ RF+++I N I++ +G
Sbjct: 68 ETYPFNPPKVRFITKIWHPN---ISSVTG 93
>1tte_A Ubiquitin-conjugating enzyme E2-24 kDa; UBC1, ubiquitin-dependent
degradation, ligase; NMR {Saccharomyces cerevisiae}
SCOP: a.5.2.1 d.20.1.1
Length = 215
Score = 68.7 bits (168), Expect = 2e-14
Identities = 22/83 (26%), Positives = 44/83 (53%), Gaps = 3/83 (3%)
Query: 81 RLLEELEHGQRGVGDGTISWGLENDDDMTLTHWTGMIIGPPRTPYENRMYSLKIECGPRY 140
R+++E++ + I+ ++ D+ H G +GPP TPYE + + IE Y
Sbjct: 6 RIMKEIQAVKDDPAAH-ITLEFVSESDIH--HLKGTFLGPPGTPYEGGKFVVDIEVPMEY 62
Query: 141 PDEPPQCRFVSRINMTCINNTSG 163
P +PP+ +F +++ I++ +G
Sbjct: 63 PFKPPKMQFDTKVYHPNISSVTG 85
>1fxt_A Ubiquitin-conjugating enzyme E2-24 kDa; ligase; NMR {Saccharomyces
cerevisiae} SCOP: d.20.1.1 PDB: 1fzy_A
Length = 149
Score = 66.1 bits (162), Expect = 4e-14
Identities = 22/83 (26%), Positives = 44/83 (53%), Gaps = 3/83 (3%)
Query: 81 RLLEELEHGQRGVGDGTISWGLENDDDMTLTHWTGMIIGPPRTPYENRMYSLKIECGPRY 140
R+++E++ + I+ ++ D+ H G +GPP TPYE + + IE Y
Sbjct: 5 RIMKEIQAVKDDPAAH-ITLEFVSESDIH--HLKGTFLGPPGTPYEGGKFVVDIEVPMEY 61
Query: 141 PDEPPQCRFVSRINMTCINNTSG 163
P +PP+ +F +++ I++ +G
Sbjct: 62 PFKPPKMQFDTKVYHPNISSVTG 84
>3h8k_A Ubiquitin-conjugating enzyme E2 G2; alpha beta, all alpha, ligase,
UBL conjugation pathway, endo reticulum, membrane,
metal-binding; 1.80A {Homo sapiens} PDB: 3fsh_A 2cyx_A
2kly_A
Length = 164
Score = 66.6 bits (163), Expect = 5e-14
Identities = 19/73 (26%), Positives = 33/73 (45%), Gaps = 3/73 (4%)
Query: 81 RLLEELEHGQRGVGDGTISWGLENDDDMTLTHWTGMIIGPPRTPYENRMYSLKIECGPRY 140
RL+ E + +G I G N+++ W +I+GP T +E ++ + Y
Sbjct: 7 RLMAEYKQLTLNPPEG-IVAGPMNEENFF--EWEALIMGPEDTCFEFGVFPAILSFPLDY 63
Query: 141 PDEPPQCRFVSRI 153
P PP+ RF +
Sbjct: 64 PLSPPKMRFTCEM 76
>2ucz_A UBC7, ubiquitin conjugating enzyme; ubiquitin conjugation, ligase,
yeast; 2.93A {Saccharomyces cerevisiae} SCOP: d.20.1.1
Length = 165
Score = 65.8 bits (161), Expect = 7e-14
Identities = 24/73 (32%), Positives = 40/73 (54%), Gaps = 3/73 (4%)
Query: 81 RLLEELEHGQRGVGDGTISWGLENDDDMTLTHWTGMIIGPPRTPYENRMYSLKIECGPRY 140
RLL+EL+ + G I G ++++++ W +I GPP TPY + +++ K+E Y
Sbjct: 8 RLLKELQQLIKDSPPG-IVAGPKSENNIF--IWDCLIQGPPDTPYADGVFNAKLEFPKDY 64
Query: 141 PDEPPQCRFVSRI 153
P PP+ F I
Sbjct: 65 PLSPPKLTFTPSI 77
>1yrv_A Ubiquitin-conjugating ligase MGC351130; structural genomics
consortium, SGC, ubiquitin- conjugating enzyme; 2.18A
{Homo sapiens} SCOP: d.20.1.1
Length = 169
Score = 65.4 bits (160), Expect = 1e-13
Identities = 13/73 (17%), Positives = 27/73 (36%), Gaps = 4/73 (5%)
Query: 81 RLLEELEHGQRGVGDGTISWGLENDDDMTLTHWTGMIIGPPRTPYENRMYSLKIECGPRY 140
L + + G I+ ++D + W I G + ++ ++ L I Y
Sbjct: 27 LLHRDFCDLKENNYKG-ITAKPVSED---MMEWEVEIEGLQNSVWQGLVFQLTIHFTSEY 82
Query: 141 PDEPPQCRFVSRI 153
PP +F++
Sbjct: 83 NYAPPVVKFITIP 95
>2a7l_A Hypothetical ubiquitin-conjugating enzyme LOC55284; structural
genomics consortium, (SGC), ligase; 1.82A {Homo sapiens}
SCOP: d.20.1.1
Length = 136
Score = 64.7 bits (158), Expect = 1e-13
Identities = 20/72 (27%), Positives = 32/72 (44%), Gaps = 2/72 (2%)
Query: 81 RLLEELEHGQRGVGDGTISWGLENDDDMTLTHWTGMIIGPPRTPYENRMYSLKIECGPRY 140
RL +EL Q G ++ ++ + ++T W + G P T YE + L + RY
Sbjct: 26 RLQKELLALQNDPPPG-MTLNEKSVQN-SITQWIVDMEGAPGTLYEGEKFQLLFKFSSRY 83
Query: 141 PDEPPQCRFVSR 152
P + PQ F
Sbjct: 84 PFDSPQVMFTGE 95
>3rz3_A Ubiquitin-conjugating enzyme E2 R1; ubiquitin conjugating enzyme
domain, E2 domain, ligase-ligas inhibitor complex; HET:
U94; 2.30A {Homo sapiens} PDB: 2ob4_A
Length = 183
Score = 65.9 bits (161), Expect = 1e-13
Identities = 23/73 (31%), Positives = 36/73 (49%), Gaps = 3/73 (4%)
Query: 81 RLLEELEHGQRGVGDGTISWGLENDDDMTLTHWTGMIIGPPRTPYENRMYSLKIECGPRY 140
LL EL+ Q +G L ++ D L +W I GPP T YE + +++ Y
Sbjct: 11 ALLLELKGLQEEPVEG-FRVTLVDEGD--LYNWEVAIFGPPNTYYEGGYFKARLKFPIDY 67
Query: 141 PDEPPQCRFVSRI 153
P PP RF++++
Sbjct: 68 PYSPPAFRFLTKM 80
>1ayz_A UBC2, ubiquitin-conjugating enzyme RAD6; ubiquitin conjugation;
2.60A {Saccharomyces cerevisiae} SCOP: d.20.1.1
Length = 169
Score = 65.4 bits (160), Expect = 1e-13
Identities = 23/73 (31%), Positives = 38/73 (52%), Gaps = 4/73 (5%)
Query: 81 RLLEELEHGQRGVGDGTISWGLENDDDMTLTHWTGMIIGPPRTPYENRMYSLKIECGPRY 140
RL+ + + + G +S D+ + W MIIGP TPYE+ + L +E Y
Sbjct: 8 RLMRDFKRMKEDAPPG-VSASPLPDN---VMVWNAMIIGPADTPYEDGTFRLLLEFDEEY 63
Query: 141 PDEPPQCRFVSRI 153
P++PP +F+S +
Sbjct: 64 PNKPPHVKFLSEM 76
>2gjd_A Ubiquitin-conjugating enzyme E2-18 kDa; UBC9P, SMT3,
crystallography, ligase; 1.75A {Saccharomyces
cerevisiae} PDB: 2eke_A 3ong_B
Length = 157
Score = 65.0 bits (159), Expect = 1e-13
Identities = 18/75 (24%), Positives = 30/75 (40%), Gaps = 3/75 (4%)
Query: 81 RLLEELEHGQRGVGDGTISWGLENDDDMT--LTHWTGMIIGPPRTPYENRMYSLKIECGP 138
RL EE + ++ G D + L W I G T + +Y + +E
Sbjct: 8 RLQEERKKWRKDHPFG-FYAKPVKKADGSMDLQKWEAGIPGKEGTNWAGGVYPITVEYPN 66
Query: 139 RYPDEPPQCRFVSRI 153
YP +PP+ +F +
Sbjct: 67 EYPSKPPKVKFPAGF 81
>2grr_A Ubiquitin-conjugating enzyme E2 I; ubiquitin, conjugation, small
ubiquitin like modifer, SMT3, ligase; 1.30A {Homo
sapiens} PDB: 2grq_A 2grn_A 2pe6_A 2gro_A 2grp_A 1u9a_A
1u9b_A 2vrr_A 2px9_B 1z5s_A 2xwu_A 3uin_A 3uio_A 3uip_A*
1kps_A 2o25_C 1a3s_A 3a4s_A 2uyz_A
Length = 161
Score = 64.2 bits (157), Expect = 3e-13
Identities = 20/74 (27%), Positives = 36/74 (48%), Gaps = 1/74 (1%)
Query: 81 RLLEELEHGQRGVGDGTISWGLENDDDMT-LTHWTGMIIGPPRTPYENRMYSLKIECGPR 139
RL +E + ++ G ++ +N D L +W I G TP+E ++ L++
Sbjct: 11 RLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKDD 70
Query: 140 YPDEPPQCRFVSRI 153
YP PP+C+F +
Sbjct: 71 YPSSPPKCKFEPPL 84
>2pwq_A Ubiquitin conjugating enzyme; structural genomics consortium, SGC,
ligase; 1.90A {Plasmodium yoelii}
Length = 216
Score = 65.6 bits (160), Expect = 3e-13
Identities = 23/73 (31%), Positives = 36/73 (49%), Gaps = 4/73 (5%)
Query: 81 RLLEELEHGQRGVGDGTISWGLENDDDMTLTHWTGMIIGPPRTPYENRMYSLKIECGPRY 140
RL +EL+ + I +++ + W G I GP TPYE ++L I Y
Sbjct: 27 RLQKELKDIENENVQE-IDAHIKDSN---FFEWVGFIKGPEGTPYEGGHFTLAITIPNDY 82
Query: 141 PDEPPQCRFVSRI 153
P PP+ +FV++I
Sbjct: 83 PYNPPKIKFVTKI 95
>2awf_A Ubiquitin-conjugating enzyme E2 G1; ligase, UBL conjugation
pathway, structural genomics, structural genomics
consortium SGC; 2.10A {Homo sapiens} SCOP: d.20.1.1 PDB:
1pzv_A
Length = 172
Score = 64.4 bits (157), Expect = 3e-13
Identities = 23/73 (31%), Positives = 37/73 (50%), Gaps = 3/73 (4%)
Query: 81 RLLEELEHGQRGVGDGTISWGLENDDDMTLTHWTGMIIGPPRTPYENRMYSLKIECGPRY 140
L +L + +G S GL +D+D+ W +IIGPP T YE ++ + Y
Sbjct: 21 LLRRQLAELNKNPVEG-FSAGLIDDNDLY--RWEVLIIGPPDTLYEGGVFKAHLTFPKDY 77
Query: 141 PDEPPQCRFVSRI 153
P PP+ +F++ I
Sbjct: 78 PLRPPKMKFITEI 90
>2f4z_A Tgtwinscan_2721 - E2 domain; ubiquitin conjugating tgtwinscan_2721,
structural genomics, structural genomics consortium,
SGC; 2.11A {Toxoplasma gondii} SCOP: d.20.1.1
Length = 193
Score = 64.8 bits (158), Expect = 3e-13
Identities = 27/85 (31%), Positives = 38/85 (44%), Gaps = 15/85 (17%)
Query: 81 RLLEELEHGQRGVGDGT------------ISWGLENDDDMTLTHWTGMIIGPPRTPYENR 128
RLL+EL Q+ +S + D + W G I GP TPYE
Sbjct: 36 RLLKELADIQQLQRAHDSEPAATHSTSHGVSAQIVGGD---IHRWRGFIAGPLGTPYEGG 92
Query: 129 MYSLKIECGPRYPDEPPQCRFVSRI 153
++L I P YP PP+ +FV++I
Sbjct: 93 HFTLDIVIPPDYPYNPPKMKFVTKI 117
>2e2c_A Ubiquitin conjugating enzyme; ubiquitin conjugation, ubiquitin
carrier protein, thioester ligase; 2.00A {Spisula
solidissima} SCOP: d.20.1.1
Length = 156
Score = 63.8 bits (156), Expect = 3e-13
Identities = 22/73 (30%), Positives = 32/73 (43%), Gaps = 4/73 (5%)
Query: 81 RLLEELEHGQRGVGDGTISWGLENDDDMTLTHWTGMIIGPPRTPYENRMYSLKIECGPRY 140
RL +EL G I+ + D+ L W + GP T YE+ Y L +E Y
Sbjct: 13 RLQQELRTLLMSGDPG-ITAFPDGDN---LFKWVATLDGPKDTVYESLKYKLTLEFPSDY 68
Query: 141 PDEPPQCRFVSRI 153
P +PP +F +
Sbjct: 69 PYKPPVVKFTTPC 81
>1jat_A Ubiquitin-conjugating enzyme E2-17.5 kDa; UEV, ligase; 1.60A
{Saccharomyces cerevisiae} SCOP: d.20.1.1 PDB: 1jbb_A
2gmi_A 3hct_B 3hcu_B 4dhi_D 1j7d_B 4dhj_C 4dhz_F
Length = 155
Score = 63.4 bits (155), Expect = 5e-13
Identities = 21/73 (28%), Positives = 40/73 (54%), Gaps = 4/73 (5%)
Query: 81 RLLEELEHGQRGVGDGTISWGLENDDDMTLTHWTGMIIGPPRTPYENRMYSLKIECGPRY 140
R+++E E G I+ +D+ L ++ I GP ++PYE+ ++ L++ Y
Sbjct: 9 RIIKETEKLVSDPVPG-ITAEPHDDN---LRYFQVTIEGPEQSPYEDGIFELELYLPDDY 64
Query: 141 PDEPPQCRFVSRI 153
P E P+ RF+++I
Sbjct: 65 PMEAPKVRFLTKI 77
>1zdn_A Ubiquitin-conjugating enzyme E2S; structural genomics consortium,
ubiquitin-conjuga enzyme, ligase, SGC; 1.93A {Homo
sapiens} SCOP: d.20.1.1
Length = 158
Score = 63.4 bits (155), Expect = 5e-13
Identities = 20/73 (27%), Positives = 33/73 (45%), Gaps = 4/73 (5%)
Query: 81 RLLEELEHGQRGVGDGTISWGLENDDDMTLTHWTGMIIGPPRTPYENRMYSLKIECGPRY 140
+ +E+ DG I +D LT I GP TPY ++ +K+ G +
Sbjct: 17 LVYKEVTTLTADPPDG-IKVFPNEED---LTDLQVTIEGPEGTPYAGGLFRMKLLLGKDF 72
Query: 141 PDEPPQCRFVSRI 153
P PP+ F+++I
Sbjct: 73 PASPPKGYFLTKI 85
>2aak_A UBC1, ubiquitin conjugating enzyme; ubiquitin conjugation, ligase;
2.40A {Arabidopsis thaliana} SCOP: d.20.1.1 PDB: 1jas_A
2y4w_A 2yb6_A 2ybf_A 1q34_A 1z3d_A
Length = 152
Score = 63.4 bits (155), Expect = 5e-13
Identities = 22/73 (30%), Positives = 40/73 (54%), Gaps = 4/73 (5%)
Query: 81 RLLEELEHGQRGVGDGTISWGLENDDDMTLTHWTGMIIGPPRTPYENRMYSLKIECGPRY 140
RL+ + + Q+ G IS ++++ + W +I GP TP++ + L ++ Y
Sbjct: 8 RLMRDFKRLQQDPPAG-ISGAPQDNN---IMLWNAVIFGPDDTPWDGGTFKLSLQFSEDY 63
Query: 141 PDEPPQCRFVSRI 153
P++PP RFVSR+
Sbjct: 64 PNKPPTVRFVSRM 76
>1i7k_A Ubiquitin-conjugating enzyme E2 H10; ligase; 1.95A {Homo sapiens}
SCOP: d.20.1.1
Length = 179
Score = 63.9 bits (156), Expect = 5e-13
Identities = 25/73 (34%), Positives = 33/73 (45%), Gaps = 4/73 (5%)
Query: 81 RLLEELEHGQRGVGDGTISWGLENDDDMTLTHWTGMIIGPPRTPYENRMYSLKIECGPRY 140
RL +EL GD IS E+D+ L W G I G T YE+ Y L +E Y
Sbjct: 34 RLQQELMTLMMS-GDKGISAFPESDN---LFKWVGTIHGAAGTVYEDLRYKLSLEFPSGY 89
Query: 141 PDEPPQCRFVSRI 153
P P +F++
Sbjct: 90 PYNAPTVKFLTPC 102
>2c2v_B Ubiquitin-conjugating enzyme E2 N; chaperone, heat-shock protein
complex, E3 ligase, ubiquitiny TPR, heat-shock protein;
2.9A {Homo sapiens} SCOP: d.20.1.1
Length = 154
Score = 63.1 bits (154), Expect = 7e-13
Identities = 16/73 (21%), Positives = 34/73 (46%), Gaps = 4/73 (5%)
Query: 81 RLLEELEHGQRGVGDGTISWGLENDDDMTLTHWTGMIIGPPRTPYENRMYSLKIECGPRY 140
R+++E + G I + + ++ +I GP +P+E + L++ Y
Sbjct: 9 RIIKETQRLLAEPVPG-IKAEPDESN---ARYFHVVIAGPQDSPFEGGTFKLELFLPEEY 64
Query: 141 PDEPPQCRFVSRI 153
P P+ RF+++I
Sbjct: 65 PMAAPKVRFMTKI 77
>1yh2_A HSPC150 protein similar to ubiquitin-conjugating enzyme; structural
genomics consortium, HSCP150, ligase, SGC; 2.00A {Homo
sapiens} SCOP: d.20.1.1
Length = 169
Score = 63.5 bits (155), Expect = 7e-13
Identities = 24/73 (32%), Positives = 34/73 (46%), Gaps = 4/73 (5%)
Query: 81 RLLEELEHGQRGVGDGTISWGLENDDDMTLTHWTGMIIGPPRTPYENRMYSLKIECGPRY 140
RL EL G I+ + D + I+G TPYE ++ L++ RY
Sbjct: 8 RLKRELHMLATEPPPG-ITCWQDKDQ---MDDLRAQILGGANTPYEKGVFKLEVIIPERY 63
Query: 141 PDEPPQCRFVSRI 153
P EPPQ RF++ I
Sbjct: 64 PFEPPQIRFLTPI 76
>2r0j_A Ubiquitin carrier protein; ubiquitin conjugating, malaria, ligas
conjugation pathway, structural genomics, structural
genomi consortium; 1.85A {Plasmodium falciparum} PDB:
3e95_A
Length = 149
Score = 63.0 bits (154), Expect = 7e-13
Identities = 22/73 (30%), Positives = 37/73 (50%), Gaps = 4/73 (5%)
Query: 81 RLLEELEHGQRGVGDGTISWGLENDDDMTLTHWTGMIIGPPRTPYENRMYSLKIECGPRY 140
R+ +E ++ G I ++ H+ +I GP TPYE Y L++ +Y
Sbjct: 5 RITKETQNLANEPPPG-IMAVPVPEN---YRHFNILINGPDGTPYEGGTYKLELFLPEQY 60
Query: 141 PDEPPQCRFVSRI 153
P EPP+ RF+++I
Sbjct: 61 PMEPPKVRFLTKI 73
>2fo3_A Ubiquitin-conjugating enzyme; SGC, UBC, structural genomics,
structural genomics consortium, unknown function; 1.86A
{Plasmodium vivax} SCOP: d.20.1.1
Length = 125
Score = 62.2 bits (152), Expect = 7e-13
Identities = 17/73 (23%), Positives = 30/73 (41%), Gaps = 4/73 (5%)
Query: 81 RLLEELEHGQRGVGDGTISWGLENDDDMTLTHWTGMIIGPPRTPYENRMYSLKIECGPRY 140
R+ +EL + + + ++ + W +G T Y N +Y LKI Y
Sbjct: 10 RIQKELHNFLNNPPIN-CTLDVHPNN---IRIWIVKYVGLENTIYANEVYKLKIIFPDDY 65
Query: 141 PDEPPQCRFVSRI 153
P +PP F+ +
Sbjct: 66 PLKPPIVYFLQKP 78
>2h2y_A Ubiquitin-conjugating enzyme; structural genomics, unknown
function, structural genomics consortium, SGC; 2.80A
{Plasmodium falciparum 3D7}
Length = 136
Score = 62.3 bits (152), Expect = 9e-13
Identities = 16/73 (21%), Positives = 30/73 (41%), Gaps = 4/73 (5%)
Query: 81 RLLEELEHGQRGVGDGTISWGLENDDDMTLTHWTGMIIGPPRTPYENRMYSLKIECGPRY 140
R+ +EL + + + + + + W +G T Y N +Y +KI Y
Sbjct: 24 RIQKELNNFLKNPPIN-CTIDVHPSN---IRIWIVQYVGLENTIYANEVYKIKIIFPDNY 79
Query: 141 PDEPPQCRFVSRI 153
P +PP F+ +
Sbjct: 80 PLKPPIVYFLQKP 92
>2onu_A Ubiquitin-conjugating enzyme, putative; UBC, plasmodium FAL
structural genomics consortium, SGC, ligase; HET: PG4;
2.38A {Plasmodium falciparum}
Length = 152
Score = 62.7 bits (153), Expect = 1e-12
Identities = 15/69 (21%), Positives = 26/69 (37%), Gaps = 9/69 (13%)
Query: 98 ISWGLENDDDMTLTHWTGMIIGPPRTPYENRMYSLKIECGPRYPDEPPQCRFVSRI---N 154
L N + M GP T YE ++ + + YP P F++++ N
Sbjct: 19 YDLELNNGS---TQDFDVMFHGPNGTAYEGGIWKVHVTLPDDYPFASPSIGFMNKLLHPN 75
Query: 155 MTCINNTSG 163
++ SG
Sbjct: 76 ---VDEASG 81
>3rcz_B SUMO-conjugating enzyme UBC9; SUMO-like domain, protein:protein
interaction, protein ligase complex; HET: DNA; 1.90A
{Schizosaccharomyces pombe}
Length = 163
Score = 62.7 bits (153), Expect = 1e-12
Identities = 23/75 (30%), Positives = 32/75 (42%), Gaps = 3/75 (4%)
Query: 81 RLLEELEHGQRGVGDGTISWGLENDDDMT--LTHWTGMIIGPPRTPYENRMYSLKIECGP 138
RL EE + +R G D L +W I G P+T +E +Y L +
Sbjct: 14 RLQEERKQWRRDHPFG-FYAKPCKSSDGGLDLMNWKVGIPGKPKTSWEGGLYKLTMAFPE 72
Query: 139 RYPDEPPQCRFVSRI 153
YP PP+CRF +
Sbjct: 73 EYPTRPPKCRFTPPL 87
>3bzh_A Ubiquitin-conjugating enzyme E2 E1; structural genomics consortium,
ubiquitin-conjuga enzyme, ligase, SGC, UBL conjugation
pathway; 1.60A {Homo sapiens} PDB: 1y6l_A
Length = 194
Score = 63.2 bits (154), Expect = 1e-12
Identities = 23/73 (31%), Positives = 35/73 (47%), Gaps = 4/73 (5%)
Query: 81 RLLEELEHGQRGVGDGTISWGLENDDDMTLTHWTGMIIGPPRTPYENRMYSLKIECGPRY 140
R+ +EL S G + D+ + W I+GPP + YE ++ L I P Y
Sbjct: 52 RIQKELADITLDPPPN-CSAGPKGDN---IYEWRSTILGPPGSVYEGGVFFLDITFTPEY 107
Query: 141 PDEPPQCRFVSRI 153
P +PP+ F +RI
Sbjct: 108 PFKPPKVTFRTRI 120
>1z2u_A Ubiquitin-conjugating enzyme E2 2; PSI, secsg, proteosome pathway,
structural genomics, protein structure initiative; 1.10A
{Caenorhabditis elegans} SCOP: d.20.1.1 PDB: 3tgd_A
2esk_A 1ur6_A 1w4u_A 4a49_B* 4a4b_C* 4a4c_C* 3eb6_B
3l1y_A 2esp_A 2eso_A 2esq_A 3l1z_A 2oxq_A 3a33_A 4ddg_D
4ddi_D 1x23_A 3rpg_A 2fuh_A ...
Length = 150
Score = 62.2 bits (152), Expect = 1e-12
Identities = 26/73 (35%), Positives = 37/73 (50%), Gaps = 4/73 (5%)
Query: 81 RLLEELEHGQRGVGDGTISWGLENDDDMTLTHWTGMIIGPPRTPYENRMYSLKIECGPRY 140
R+ +EL+ R S G DD L HW I+GPP +PY+ ++ L I Y
Sbjct: 8 RIQKELQDLGRDPPAQ-CSAGPVGDD---LFHWQATIMGPPESPYQGGVFFLTIHFPTDY 63
Query: 141 PDEPPQCRFVSRI 153
P +PP+ F +RI
Sbjct: 64 PFKPPKVAFTTRI 76
>2ayv_A Ubiquitin-conjugating enzyme E2; structural genomics, structural
genomics consortium, ubiquit ubiquitin-conjugating
enzyme, SGC, ligase; 2.00A {Toxoplasma gondii} SCOP:
d.20.1.1
Length = 166
Score = 62.7 bits (153), Expect = 1e-12
Identities = 22/73 (30%), Positives = 34/73 (46%), Gaps = 4/73 (5%)
Query: 81 RLLEELEHGQRGVGDGTISWGLENDDDMTLTHWTGMIIGPPRTPYENRMYSLKIECGPRY 140
R+ +EL + S G DD + HW I+GP +PY ++ L I Y
Sbjct: 25 RINKELNDLSKDPPTN-CSAGPVGDD---MFHWQATIMGPEDSPYSGGVFFLNIHFPSDY 80
Query: 141 PDEPPQCRFVSRI 153
P +PP+ F ++I
Sbjct: 81 PFKPPKVNFTTKI 93
>2y9m_A Ubiquitin-conjugating enzyme E2-21 kDa; ligase-transport protein
complex, ubiquitin conjugating ENZY complex, peroxisomal
protein; 2.60A {Saccharomyces cerevisiae} PDB: 2y9p_A
2y9o_A
Length = 172
Score = 62.8 bits (153), Expect = 1e-12
Identities = 24/99 (24%), Positives = 43/99 (43%), Gaps = 19/99 (19%)
Query: 81 RLLEELEHGQRGVGDG----------TISWGLENDDDMTLTHWTGMIIGPPRTPYENRMY 130
R+++E + + + S ++ D L+ W +I GP TPYEN +
Sbjct: 10 RIVKEYKVILKTLASDDPIANPYRGIIESLNPIDETD--LSKWEAIISGPSDTPYENHQF 67
Query: 131 SLKIECGPRYPDEPPQCRFV-SRI---NMTCINNTSGIV 165
+ IE YP PP+ F+ + I N + + +G +
Sbjct: 68 RILIEVPSSYPMNPPKISFMQNNILHCN---VKSATGEI 103
>2c4o_A Ubiquitin-conjugating enzyme E2 D2; thioesterification, ligase, UBL
conjugation pathway; HET: CME; 1.94A {Homo sapiens}
SCOP: d.20.1.1 PDB: 2clw_A* 2c4p_A
Length = 165
Score = 61.9 bits (151), Expect = 2e-12
Identities = 24/73 (32%), Positives = 35/73 (47%), Gaps = 4/73 (5%)
Query: 81 RLLEELEHGQRGVGDGTISWGLENDDDMTLTHWTGMIIGPPRTPYENRMYSLKIECGPRY 140
R+ +EL R S G DD + HW I+GP +PY+ ++ L I Y
Sbjct: 23 RIHKELNDLARDPPAQ-CSAGPVGDD---MFHWQATIMGPNDSPYQGGVFFLTIHFPTDY 78
Query: 141 PDEPPQCRFVSRI 153
P +PP+ F +RI
Sbjct: 79 PFKPPKVAFTTRI 91
>3fn1_B NEDD8-conjugating enzyme UBE2F; ligase, ATP-binding, cell cycle,
nucleotide-binding, UBL CON pathway; 2.50A {Homo
sapiens} PDB: 2edi_A
Length = 167
Score = 60.8 bits (148), Expect = 5e-12
Identities = 11/77 (14%), Positives = 30/77 (38%), Gaps = 4/77 (5%)
Query: 77 PRNFRLLEELEHGQRGVGDGTISWGLENDDDMTLTHWTGMIIGPPRTPYENRMYSLKIEC 136
R+ L++E+ + + + + + H + + P Y+ + + E
Sbjct: 14 VRDKLLVKEVAELEANLPCT-CKVHFPDPNKL---HCFQLTVTPDEGYYQGGKFQFETEV 69
Query: 137 GPRYPDEPPQCRFVSRI 153
Y PP+ + +++I
Sbjct: 70 PDAYNMVPPKVKCLTKI 86
>2z5d_A Ubiquitin-conjugating enzyme E2 H; UBE2H, SGC, ligase, structural
genomics, structural genomics consortium; 2.10A {Homo
sapiens}
Length = 179
Score = 59.7 bits (145), Expect = 2e-11
Identities = 16/57 (28%), Positives = 29/57 (50%), Gaps = 6/57 (10%)
Query: 110 LTHWTGMIIGPPRTPYENRMYSLKIECGPRYPDEPPQCRFVSRI---NMTCINNTSG 163
L + GP TPYE ++ ++++ +YP + P F+++I N I+ SG
Sbjct: 50 LNEFVVKFYGPQGTPYEGGVWKVRVDLPDKYPFKSPSIGFMNKIFHPN---IDEASG 103
>1yf9_A Ubiquitin carrier protein 4; SGPP, structural genomics, PSI,
protein structure initiative ubiquitin conjugating
enzyme; 2.00A {Leishmania major} SCOP: d.20.1.1
Length = 171
Score = 59.3 bits (144), Expect = 2e-11
Identities = 18/64 (28%), Positives = 28/64 (43%), Gaps = 8/64 (12%)
Query: 105 DDDMTLTHWTGMIIGPPRTPYENRMYSLKIECGPRYPDEPPQCRFVSRI---NMTCINNT 161
D + + GP TPYE+ + L ++ YP + P F +RI N ++
Sbjct: 34 SDTVA--EFWVEFKGPEGTPYEDGTWMLHVQLPSDYPFKSPSIGFCNRILHPN---VDER 88
Query: 162 SGIV 165
SG V
Sbjct: 89 SGSV 92
>3ceg_A Baculoviral IAP repeat-containing protein 6; apoptosis, ligase,
protease inhibitor, thiol protease inhibitor, UBL
conjugation pathway; HET: MSE; 2.01A {Homo sapiens}
Length = 323
Score = 60.8 bits (147), Expect = 3e-11
Identities = 12/57 (21%), Positives = 21/57 (36%), Gaps = 2/57 (3%)
Query: 104 NDDDMTLTHWTGMIIGPPRTPYENRMYSLKIECGPRYPDEPPQCRFVSRINMTCINN 160
+++ + +I GP TPY N + + YP PP + + N
Sbjct: 105 DEERLD--IMKVLITGPADTPYANGCFEFDVYFPQDYPSSPPLVNLETTGGHSVRFN 159
>4ddg_A Ubiquitin-conjugating enzyme E2 D2, ubiquitin THI OTUB1;
inhibition, hydrolase-ligase complex; 3.30A {Homo
sapiens} PDB: 4ddi_A
Length = 399
Score = 60.3 bits (146), Expect = 6e-11
Identities = 24/73 (32%), Positives = 35/73 (47%), Gaps = 4/73 (5%)
Query: 81 RLLEELEHGQRGVGDGTISWGLENDDDMTLTHWTGMIIGPPRTPYENRMYSLKIECGPRY 140
R+ +EL R S G DD + HW I+GP +PY+ ++ L I Y
Sbjct: 7 RIHKELNDLARDPPAQ-CSAGPVGDD---MFHWQATIMGPNDSPYQGGVFFLTIHFPTDY 62
Query: 141 PDEPPQCRFVSRI 153
P +PP+ F +RI
Sbjct: 63 PFKPPKVAFTTRI 75
>3o2u_A NEDD8-conjugating enzyme UBC12; E2 conjugase, ligase; 2.00A
{Saccharomyces cerevisiae} PDB: 3tdi_C
Length = 190
Score = 58.2 bits (141), Expect = 7e-11
Identities = 13/73 (17%), Positives = 26/73 (35%)
Query: 81 RLLEELEHGQRGVGDGTISWGLENDDDMTLTHWTGMIIGPPRTPYENRMYSLKIECGPRY 140
RL +L+ + D + + +I+ P Y + ++ Y
Sbjct: 33 RLKRDLDSLDLPPTVTLNVITSPDSADRSQSPKLEVIVRPDEGYYNYGSINFNLDFNEVY 92
Query: 141 PDEPPQCRFVSRI 153
P EPP+ + +I
Sbjct: 93 PIEPPKVVCLKKI 105
>1c4z_D UBCH7, ubiquitin conjugating enzyme E2; bilobal structure,
elongated shape, E3 ubiquitin ligase, E2 ubiquitin
conjugating enzyme; 2.60A {Homo sapiens} SCOP: d.20.1.1
PDB: 1fbv_C* 3sy2_C 3sqv_C
Length = 154
Score = 57.7 bits (140), Expect = 7e-11
Identities = 19/73 (26%), Positives = 35/73 (47%), Gaps = 4/73 (5%)
Query: 81 RLLEELEHGQRGVGDGTISWGLENDDDMTLTHWTGMIIGPPRTPYENRMYSLKIECGPRY 140
RL++ELE ++ ++ + L W G+I P PY+ + ++I Y
Sbjct: 6 RLMKELEEIRKCGMKN-FRNIQVDEAN--LLTWQGLI-VPDNPPYDKGAFRIEINFPAEY 61
Query: 141 PDEPPQCRFVSRI 153
P +PP+ F ++I
Sbjct: 62 PFKPPKITFKTKI 74
>1wzv_A Ubiquitin-conjugating enzyme E2 L6; ligase; 2.10A {Homo sapiens}
SCOP: d.20.1.1 PDB: 1wzw_A 2kjh_A
Length = 155
Score = 57.3 bits (139), Expect = 9e-11
Identities = 19/73 (26%), Positives = 38/73 (52%), Gaps = 4/73 (5%)
Query: 81 RLLEELEHGQRGVGDGTISWGLENDDDMTLTHWTGMIIGPPRTPYENRMYSLKIECGPRY 140
R+++ELE Q+ + +D + + W ++ P + PY + ++L+I P Y
Sbjct: 8 RVVKELEDLQKKPPPY-LRNLSSDDAN--VLVWHA-LLLPDQPPYHLKAFNLRISFPPEY 63
Query: 141 PDEPPQCRFVSRI 153
P +PP +F ++I
Sbjct: 64 PFKPPMIKFTTKI 76
>2nvu_C NEDD8-conjugating enzyme UBC12; multifunction macromolecular
complex, ubiquitin, ATP, conformational change,
thioester, switch, adenylation, protein turnover,
ligase; HET: ATP; 2.80A {Homo sapiens} SCOP: d.20.1.1
Length = 180
Score = 57.8 bits (140), Expect = 9e-11
Identities = 13/77 (16%), Positives = 30/77 (38%), Gaps = 6/77 (7%)
Query: 77 PRNFRLLEELEHGQRGVGDGTISWGLENDDDMTLTHWTGMIIGPPRTPYENRMYSLKIEC 136
R+ +++ T + DD L ++ +I P Y++ + +
Sbjct: 26 AAQLRIQKDINELNL---PKTCDISFSDPDD--LLNFKL-VICPDEGFYKSGKFVFSFKV 79
Query: 137 GPRYPDEPPQCRFVSRI 153
G YP +PP+ + + +
Sbjct: 80 GQGYPHDPPKVKCETMV 96
>1y8x_A Ubiquitin-conjugating enzyme E2 M; ubiquitin-conjugating enzyme E2
M, ligase; 2.40A {Homo sapiens} SCOP: d.20.1.1
Length = 160
Score = 56.9 bits (138), Expect = 1e-10
Identities = 13/73 (17%), Positives = 30/73 (41%), Gaps = 6/73 (8%)
Query: 81 RLLEELEHGQRGVGDGTISWGLENDDDMTLTHWTGMIIGPPRTPYENRMYSLKIECGPRY 140
R+ +++ T + DD L ++ +I P Y++ + + G Y
Sbjct: 10 RIQKDINELNL---PKTCDISFSDPDD--LLNFKL-VICPDEGFYKSGKFVFSFKVGQGY 63
Query: 141 PDEPPQCRFVSRI 153
P +PP+ + + +
Sbjct: 64 PHDPPKVKCETMV 76
>4ds2_A Ubiquitin-conjugating enzyme E2, putative; structural genomics,
PSI, protein structure initiative; 2.63A {Trypanosoma
cruzi}
Length = 167
Score = 54.0 bits (130), Expect = 2e-09
Identities = 14/59 (23%), Positives = 24/59 (40%), Gaps = 4/59 (6%)
Query: 97 TISWGLENDDDMTLTHWTGMIIGPPRTPY--ENRMYSLKIECGPRYPDEPPQCRFVSRI 153
+ + + D + +W + P + Y Y L + YP EPP RFV+ +
Sbjct: 38 STAIFSVDTDTIY--NWILKVKAPADSVYGGAGNTYQLSVLFSDDYPHEPPTVRFVTPV 94
>2f4w_A Ubiquitin-conjugating enzyme E2, J2; endoplasmic reticulum, ligase,
UBL conjugation pathway, structural genomics consortium
(SGC); 2.00A {Homo sapiens} SCOP: d.20.1.1
Length = 187
Score = 54.0 bits (130), Expect = 2e-09
Identities = 15/73 (20%), Positives = 30/73 (41%), Gaps = 4/73 (5%)
Query: 81 RLLEELEHGQRGVGDGTISWGLENDDDMTLTHWTGMIIGPPRTPYENRMYSLKIECGPRY 140
RL ++ ++ + L ++ + W ++ GP TPYE Y K+ +
Sbjct: 18 RLKQDYLRIKKDPVPYICAEPLPSN----ILEWHYVVRGPEMTPYEGGYYHGKLIFPREF 73
Query: 141 PDEPPQCRFVSRI 153
P +PP ++
Sbjct: 74 PFKPPSIYMITPN 86
>1zuo_A Hypothetical protein LOC92912; ligase, ubiquitin-conjugating
enzyme, structural genomics consortium ,SGC; 1.80A {Homo
sapiens} SCOP: d.20.1.1 PDB: 2qgx_A
Length = 186
Score = 50.3 bits (120), Expect = 5e-08
Identities = 18/85 (21%), Positives = 31/85 (36%), Gaps = 13/85 (15%)
Query: 81 RLLEELEHGQRGVGDGTISWGLENDDDMTLTHWTGMIIG-PPRTPYENRM---------- 129
RL++EL R T + +E +D +L W + P +P + +
Sbjct: 31 RLMKELRDIYRSQSYKTGIYSVELIND-SLYDWHVKLQKVDPDSPLHSDLQILKEKEGIE 89
Query: 130 -YSLKIECGPRYPDEPPQCRFVSRI 153
L +P +PP R V +
Sbjct: 90 YILLNFSFKDNFPFDPPFVRVVLPV 114
>4dng_A Uncharacterized aldehyde dehydrogenase ALDY; structural genomics,
protein structure initiative, nysgrc, P biology; 2.50A
{Bacillus subtilis}
Length = 485
Score = 30.2 bits (69), Expect = 0.56
Identities = 8/71 (11%), Positives = 24/71 (33%), Gaps = 24/71 (33%)
Query: 76 VPRNFRLLEELEHGQRGVGDGTIS---------------------WGLENDDDMTLTHWT 114
+ + + +++ G V D +++ W + ++ T+T W
Sbjct: 418 LEKGEKFALQIDSGMTHVNDQSVNDSPNIAFGGNKASGVGRFGNPWVV---EEFTVTKWI 474
Query: 115 GMIIGPPRTPY 125
+ + P+
Sbjct: 475 SIQKQYRKYPF 485
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 28.4 bits (62), Expect = 1.3
Identities = 8/27 (29%), Positives = 9/27 (33%), Gaps = 10/27 (37%)
Query: 131 SLKIECGPRY-PDEPPQCRFVSRINMT 156
SLK+ Y D P I T
Sbjct: 28 SLKL-----YADDSAPAL----AIKAT 45
>3obq_A Tumor susceptibility gene 101 protein; protein transprot, ubiquitin
binding, protein transport; 1.40A {Homo sapiens} PDB:
3obs_A 3obu_A 3obx_A 3p9g_A* 3p9h_A* 2f0r_A 1kpp_A
1kpq_A 1m4p_A 1m4q_A 1s1q_A
Length = 146
Score = 27.6 bits (61), Expect = 2.0
Identities = 14/54 (25%), Positives = 18/54 (33%), Gaps = 6/54 (11%)
Query: 104 NDDDMTLTHWTGMIIGPPRTPYENRMYSLKIEC--GPRYPDEPPQCRFVSRINM 155
L + TG I PY Y++ I YP PP C +M
Sbjct: 47 GTGSRELMNLTGTIP----VPYRGNTYNIPICLWLLDTYPYNPPICFVKPTSSM 96
>2cor_A Pinch protein; LIM domain, particularly interesting NEW Cys- His
protein, LIM and senescent cell antigen-like domains 1,
structural genomics; NMR {Homo sapiens} SCOP: g.39.1.3
g.39.1.3
Length = 79
Score = 25.9 bits (57), Expect = 3.3
Identities = 4/26 (15%), Positives = 9/26 (34%), Gaps = 2/26 (7%)
Query: 54 CFHKENYPFCTNFHCYLKLFSVVPRN 79
+ +C C+ K+ P +
Sbjct: 55 ARELKGELYCL--PCHDKMGVSGPSS 78
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 27.7 bits (61), Expect = 3.9
Identities = 18/67 (26%), Positives = 23/67 (34%), Gaps = 26/67 (38%)
Query: 168 IMFWVMIEAKATHYPVDLKTGTPDQVYL----IVCVLI------RYQV-----DLTDRPF 212
I+ W+ P + TPD+ YL I C LI Y V T
Sbjct: 215 ILEWL-------ENPSN----TPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGEL 263
Query: 213 QPYLSGL 219
+ YL G
Sbjct: 264 RSYLKGA 270
>2jtn_A LIM domain-binding protein 1, LIM/homeobox protein LHX3;
intramolecular (fusion) protein-protein complex, protein
binding/transcription complex; NMR {Mus musculus}
Length = 182
Score = 27.2 bits (60), Expect = 4.0
Identities = 5/22 (22%), Positives = 9/22 (40%), Gaps = 2/22 (9%)
Query: 54 CFHKENYPFCTNFHCYLKLFSV 75
CF + +C + + K F
Sbjct: 101 CFSRGESVYCKD--DFFKRFGT 120
>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer
protein ISL-1; protein-protein complex, LIM domain, Zn
finger, activator, D binding; 2.05A {Mus musculus} PDB:
3mmk_A
Length = 169
Score = 26.7 bits (59), Expect = 4.8
Identities = 5/22 (22%), Positives = 9/22 (40%), Gaps = 2/22 (9%)
Query: 54 CFHKENYPFCTNFHCYLKLFSV 75
CF + +C + + K F
Sbjct: 47 CFSRGESVYCKD--DFFKRFGT 66
>3k2w_A Betaine-aldehyde dehydrogenase; structural genomics, PSI-2, protein
initiative; 1.90A {Pseudoalteromonas atlantica T6C}
Length = 497
Score = 27.1 bits (61), Expect = 5.0
Identities = 4/24 (16%), Positives = 9/24 (37%)
Query: 76 VPRNFRLLEELEHGQRGVGDGTIS 99
+ + +LE G+ + G
Sbjct: 429 FANINQAISDLEVGEVYINRGMGE 452
>3jz4_A Succinate-semialdehyde dehydrogenase [NADP+]; tetramer, NADP
binding, oxidoreductase; HET: NAP; 2.30A {Escherichia
coli}
Length = 481
Score = 27.1 bits (61), Expect = 5.1
Identities = 11/24 (45%), Positives = 15/24 (62%)
Query: 76 VPRNFRLLEELEHGQRGVGDGTIS 99
+ R FR+ E LE+G G+ G IS
Sbjct: 422 LSRVFRVGEALEYGIVGINTGIIS 445
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop,
OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Length = 396
Score = 27.1 bits (61), Expect = 5.5
Identities = 6/7 (85%), Positives = 7/7 (100%)
Query: 58 ENYPFCT 64
EN+PFCT
Sbjct: 50 ENFPFCT 56
>2dax_A Protein C21ORF6; RWD domain, alpha+beta sandwich fold, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
d.20.1.3
Length = 152
Score = 26.6 bits (58), Expect = 5.7
Identities = 10/36 (27%), Positives = 15/36 (41%), Gaps = 4/36 (11%)
Query: 129 MYSLKIECGPRYPDEPPQ----CRFVSRINMTCINN 160
M+SL +YP P+ +SR T +N
Sbjct: 74 MFSLACILPFKYPAVLPEITVRSVLLSRSQQTQLNT 109
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics,
GTP1OBG, PSI, protein structure initiative; 2.80A
{Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Length = 392
Score = 26.7 bits (60), Expect = 6.1
Identities = 4/7 (57%), Positives = 5/7 (71%)
Query: 58 ENYPFCT 64
NYP+ T
Sbjct: 49 ANYPYAT 55
>3so6_A LDL receptor adaptor protein; PTB, endocytic adaptor, autosomal
reces hypercholesterolemia, ARH, cholesterol; 1.37A
{Rattus norvegicus}
Length = 137
Score = 26.0 bits (57), Expect = 6.2
Identities = 7/62 (11%), Positives = 25/62 (40%)
Query: 18 LLYQIQMKGIKKITLKHSINICALRIFHQESSTILVCFHKENYPFCTNFHCYLKLFSVVP 77
++ + G K + ++ + + +S ++ +CT + K+F+ +
Sbjct: 32 IVATAKASGKKLQKVTLKVSPRGIILTDSLTSQLIENVSIYRISYCTADKMHDKVFAYIA 91
Query: 78 RN 79
++
Sbjct: 92 QS 93
>3ifg_A Succinate-semialdehyde dehydrogenase (NADP+); niaid,.infectious
disease, ssgcid, seattle structural genomi for
infectious disease; 2.70A {Burkholderia pseudomallei}
PDB: 3ifh_Q
Length = 484
Score = 26.7 bits (60), Expect = 6.2
Identities = 10/24 (41%), Positives = 15/24 (62%)
Query: 76 VPRNFRLLEELEHGQRGVGDGTIS 99
+ R +R+ E LE+G G+ G IS
Sbjct: 425 IGRVWRVAEALEYGMVGINTGLIS 448
>3rh9_A Succinate-semialdehyde dehydrogenase (NAD(P)(+)); structural
genomics, PSI-biology, NEW YORK structural genomi
research consortium; 2.63A {Marinobacter aquaeolei}
Length = 506
Score = 26.8 bits (60), Expect = 6.3
Identities = 7/24 (29%), Positives = 8/24 (33%)
Query: 76 VPRNFRLLEELEHGQRGVGDGTIS 99
R R+ L G G GT
Sbjct: 425 AERAQRVAAGLRFGHVGWNTGTGP 448
>3cue_B Transport protein particle 31 kDa subunit; membrane traffic, GEF,
tethering complex, RAB activation, GU nucleotide
exchange factor; HET: PLM; 3.70A {Saccharomyces
cerevisiae}
Length = 283
Score = 26.8 bits (58), Expect = 6.4
Identities = 12/55 (21%), Positives = 22/55 (40%)
Query: 142 DEPPQCRFVSRINMTCINNTSGIVVVIMFWVMIEAKATHYPVDLKTGTPDQVYLI 196
+ P +F+ N++C GI+ +F T + + + VYLI
Sbjct: 214 NFPTLTQFIPGENVSCEYFVCGIIKGFLFNAGFPCGVTAHRMPQGGHSQRTVYLI 268
>2w8n_A Succinate-semialdehyde dehydrogenase, mitochondrial; mitochondrion,
oxidoreductase, transit peptide, disease mutation, SSA,
NAD, ssadh; 2.00A {Homo sapiens} PDB: 2w8o_A 2w8p_A
2w8q_A 2w8r_A*
Length = 487
Score = 26.7 bits (60), Expect = 6.4
Identities = 10/24 (41%), Positives = 15/24 (62%)
Query: 76 VPRNFRLLEELEHGQRGVGDGTIS 99
+ +R+ E+LE G GV +G IS
Sbjct: 427 PAQIWRVAEQLEVGMVGVNEGLIS 450
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics,
structure 2 function project, S2F, unknown function;
2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Length = 363
Score = 26.6 bits (60), Expect = 6.4
Identities = 6/7 (85%), Positives = 6/7 (85%)
Query: 58 ENYPFCT 64
NYPFCT
Sbjct: 30 ANYPFCT 36
>3ek1_A Aldehyde dehydrogenase; ssgcid, oxidoreductase, structural
genomics; HET: MES; 2.10A {Brucella melitensis biovar
ABORTUS2308}
Length = 504
Score = 26.8 bits (60), Expect = 6.5
Identities = 10/24 (41%), Positives = 12/24 (50%)
Query: 76 VPRNFRLLEELEHGQRGVGDGTIS 99
R R+ E LE+G G G IS
Sbjct: 443 FSRAIRVSEALEYGMVGHNTGLIS 466
>2imp_A Lactaldehyde dehydrogenase; protein-lactate-NADH ternary complex,
oxidoreductase; HET: NAI; 2.10A {Escherichia coli} PDB:
2ilu_A* 2hg2_A* 2opx_A*
Length = 479
Score = 26.7 bits (60), Expect = 7.9
Identities = 2/22 (9%), Positives = 8/22 (36%)
Query: 78 RNFRLLEELEHGQRGVGDGTIS 99
+ ++ L+ G+ +
Sbjct: 422 VAMKAIKGLKFGETYINRENFE 443
>2l4z_A DNA endonuclease RBBP8, LIM domain transcription LMO4;
protein-protein interaction, LIM-interaction DOM LMO4,
RBBP8/CTIP, LIM-only protein; HET: DNA; NMR {Homo
sapiens}
Length = 123
Score = 25.9 bits (56), Expect = 8.1
Identities = 8/35 (22%), Positives = 14/35 (40%), Gaps = 6/35 (17%)
Query: 39 CALRIFHQESSTILVCFHKENYPFCTNFHCYLKLF 73
C ++ +S + K C N Y++LF
Sbjct: 94 CQAQLGDIGTS----SYTKSGMILCRN--DYIRLF 122
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio
project on protein structural and functional analyses;
HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Length = 368
Score = 26.3 bits (59), Expect = 9.0
Identities = 5/7 (71%), Positives = 5/7 (71%)
Query: 58 ENYPFCT 64
NYPF T
Sbjct: 29 ANYPFAT 35
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.326 0.141 0.461
Gapped
Lambda K H
0.267 0.0662 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,688,190
Number of extensions: 214719
Number of successful extensions: 520
Number of sequences better than 10.0: 1
Number of HSP's gapped: 518
Number of HSP's successfully gapped: 77
Length of query: 226
Length of database: 6,701,793
Length adjustment: 90
Effective length of query: 136
Effective length of database: 4,188,903
Effective search space: 569690808
Effective search space used: 569690808
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 55 (25.1 bits)