RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy15032
(226 letters)
>d2a4da1 d.20.1.1 (A:82-220) Ubiquitin conjugating enzyme, UBC
{Human (Homo sapiens), E2 variant 1 [TaxId: 9606]}
Length = 139
Score = 114 bits (287), Expect = 3e-33
Identities = 68/91 (74%), Positives = 82/91 (90%)
Query: 75 VVPRNFRLLEELEHGQRGVGDGTISWGLENDDDMTLTHWTGMIIGPPRTPYENRMYSLKI 134
VPRNFRLLEELE GQ+GVGDGT+SWGLE+D+DMTLT WTGMIIGPPRT YENR+YSLKI
Sbjct: 3 KVPRNFRLLEELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTIYENRIYSLKI 62
Query: 135 ECGPRYPDEPPQCRFVSRINMTCINNTSGIV 165
ECGP+YP+ PP RFV++INM +N+++G+V
Sbjct: 63 ECGPKYPEAPPFVRFVTKINMNGVNSSNGVV 93
>d1jatb_ d.20.1.1 (B:) Ubiquitin conjugating enzyme, UBC {Baker's
yeast (Saccharomyces cerevisiae), mms2 [TaxId: 4932]}
Length = 136
Score = 109 bits (274), Expect = 3e-31
Identities = 53/92 (57%), Positives = 71/92 (77%)
Query: 74 SVVPRNFRLLEELEHGQRGVGDGTISWGLENDDDMTLTHWTGMIIGPPRTPYENRMYSLK 133
S VPRNFRLLEELE G++G G + S+GL + DD+T+T W G I+GPP + +ENR+YSL
Sbjct: 1 SKVPRNFRLLEELEKGEKGFGPESCSYGLADSDDITMTKWNGTILGPPHSNHENRIYSLS 60
Query: 134 IECGPRYPDEPPQCRFVSRINMTCINNTSGIV 165
I+CGP YPD PP+ F+S+IN+ C+N T+G V
Sbjct: 61 IDCGPNYPDSPPKVTFISKINLPCVNPTTGEV 92
>d2awfa1 d.20.1.1 (A:7-131) Ubiquitin conjugating enzyme, UBC {Human
(Homo sapiens), E2 G1 [TaxId: 9606]}
Length = 125
Score = 62.8 bits (152), Expect = 2e-13
Identities = 24/90 (26%), Positives = 43/90 (47%), Gaps = 3/90 (3%)
Query: 79 NFRLLEELEHGQRGVGDGTISWGLENDDDMTLTHWTGMIIGPPRTPYENRMYSLKIECGP 138
+ L +L + +G S GL +D+D+ W +IIGPP T YE ++ +
Sbjct: 1 SLLLRRQLAELNKNPVEG-FSAGLIDDNDLY--RWEVLIIGPPDTLYEGGVFKAHLTFPK 57
Query: 139 RYPDEPPQCRFVSRINMTCINNTSGIVVVI 168
YP PP+ +F++ I ++ + + I
Sbjct: 58 DYPLRPPKMKFITEIWHPNVDKNGDVCISI 87
>d1pzva_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Nematode
(Caenorhabditis elegans), E2-19 kDa [TaxId: 6239]}
Length = 161
Score = 59.8 bits (144), Expect = 5e-12
Identities = 27/91 (29%), Positives = 47/91 (51%), Gaps = 3/91 (3%)
Query: 79 NFRLLEELEHGQRGVGDGTISWGLENDDDMTLTHWTGMIIGPPRTPYENRMYSLKIECGP 138
+ L ++L +R DG S GL +D+D+ W ++IGPP T YE + ++
Sbjct: 2 SLLLKKQLADMRRVPVDG-FSAGLVDDNDIY--KWEVLVIGPPDTLYEGGFFKAILDFPR 58
Query: 139 RYPDEPPQCRFVSRINMTCINNTSGIVVVIM 169
YP +PP+ +F+S I I+ + + I+
Sbjct: 59 DYPQKPPKMKFISEIWHPNIDKEGNVCISIL 89
>d1fzya_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Baker's
yeast (Saccharomyces cerevisiae), ubc1 [TaxId: 4932]}
Length = 149
Score = 57.9 bits (139), Expect = 2e-11
Identities = 23/96 (23%), Positives = 48/96 (50%), Gaps = 3/96 (3%)
Query: 78 RNFRLLEELEHGQRGVGDGTISWGLENDDDMTLTHWTGMIIGPPRTPYENRMYSLKIECG 137
R R+++E++ + I+ ++ D+ H G +GPP TPYE + + IE
Sbjct: 2 RAKRIMKEIQAVKDDPAAH-ITLEFVSESDIH--HLKGTFLGPPGTPYEGGKFVVDIEVP 58
Query: 138 PRYPDEPPQCRFVSRINMTCINNTSGIVVVIMFWVM 173
YP +PP+ +F +++ I++ +G + + +
Sbjct: 59 MEYPFKPPKMQFDTKVYHPNISSVTGAICLDILKNA 94
>d2uyza1 d.20.1.1 (A:3-158) Ubiquitin conjugating enzyme, UBC {Human
(Homo sapiens), ubc9 [TaxId: 9606]}
Length = 156
Score = 55.2 bits (132), Expect = 2e-10
Identities = 22/90 (24%), Positives = 43/90 (47%), Gaps = 1/90 (1%)
Query: 81 RLLEELEHGQRGVGDGTISWGLEN-DDDMTLTHWTGMIIGPPRTPYENRMYSLKIECGPR 139
RL +E + ++ G ++ +N D M L +W I G TP+E ++ L++
Sbjct: 6 RLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKDD 65
Query: 140 YPDEPPQCRFVSRINMTCINNTSGIVVVIM 169
YP PP+C+F + + + + + I+
Sbjct: 66 YPSSPPKCKFEPPLFHPNVYPSGTVSLSIL 95
>d2a7la1 d.20.1.1 (A:1-117) Ubiquitin-protein ligase W (E2 W) {Human
(Homo sapiens) [TaxId: 9606]}
Length = 117
Score = 53.9 bits (129), Expect = 3e-10
Identities = 21/83 (25%), Positives = 33/83 (39%), Gaps = 2/83 (2%)
Query: 81 RLLEELEHGQRGVGDGTISWGLENDDDMTLTHWTGMIIGPPRTPYENRMYSLKIECGPRY 140
RL +EL Q G ++ ++ + +T W + G P T YE + L + RY
Sbjct: 7 RLQKELLALQNDPPPG-MTLNEKSVQNS-ITQWIVDMEGAPGTLYEGEKFQLLFKFSSRY 64
Query: 141 PDEPPQCRFVSRINMTCINNTSG 163
P + PQ F + S
Sbjct: 65 PFDSPQVMFTGENIPVHPHVYSN 87
>d1z2ua1 d.20.1.1 (A:1-147) Ubiquitin conjugating enzyme, UBC
{Caenorhabditis elegans, E2 2 [TaxId: 6239]}
Length = 147
Score = 54.4 bits (130), Expect = 4e-10
Identities = 30/101 (29%), Positives = 46/101 (45%), Gaps = 5/101 (4%)
Query: 81 RLLEELEHGQRGVGDGTISWGLENDDDMTLTHWTGMIIGPPRTPYENRMYSLKIECGPRY 140
R+ +EL+ R S G DD L HW I+GPP +PY+ ++ L I Y
Sbjct: 5 RIQKELQDLGRDPPAQ-CSAGPVGDD---LFHWQATIMGPPESPYQGGVFFLTIHFPTDY 60
Query: 141 PDEPPQCRFVSRINMTCINNTSGIVVVIMFWVMIEAKATHY 181
P +PP+ F +RI I N++G + + + T
Sbjct: 61 PFKPPKVAFTTRIYHPNI-NSNGSICLDILRSQWSPALTIS 100
>d2fo3a1 d.20.1.1 (A:9-117) Putative ubiquitin-conjugating enzyme,
E2 domain {Plasmodium chabaudi [TaxId: 5825]}
Length = 109
Score = 53.2 bits (127), Expect = 4e-10
Identities = 18/86 (20%), Positives = 35/86 (40%), Gaps = 4/86 (4%)
Query: 80 FRLLEELEHGQRGVGDGTISWGLENDDDMTLTHWTGMIIGPPRTPYENRMYSLKIECGPR 139
+R+ +EL + + + ++ + W +G T Y N +Y LKI
Sbjct: 1 YRIQKELHNFLNNPPIN-CTLDVHPNN---IRIWIVKYVGLENTIYANEVYKLKIIFPDD 56
Query: 140 YPDEPPQCRFVSRINMTCINNTSGIV 165
YP +PP F+ + ++G +
Sbjct: 57 YPLKPPIVYFLQKPPKHTHVYSNGDI 82
>d1wzva1 d.20.1.1 (A:2-151) Ubiquitin conjugating enzyme, UBC {Human
(Homo sapiens), E2 L6 [TaxId: 9606]}
Length = 150
Score = 54.4 bits (130), Expect = 4e-10
Identities = 21/91 (23%), Positives = 44/91 (48%), Gaps = 4/91 (4%)
Query: 81 RLLEELEHGQRGVGDGTISWGLENDDDMTLTHWTGMIIGPPRTPYENRMYSLKIECGPRY 140
R+++ELE Q+ + +D + + W ++ P + PY + ++L+I P Y
Sbjct: 4 RVVKELEDLQKKPPPY-LRNLSSDDAN--VLVWHA-LLLPDQPPYHLKAFNLRISFPPEY 59
Query: 141 PDEPPQCRFVSRINMTCINNTSGIVVVIMFW 171
P +PP +F ++I ++ I + I+
Sbjct: 60 PFKPPMIKFTTKIYHPNVDENGQICLPIISS 90
>d1y8xa1 d.20.1.1 (A:27-183) Ubiquitin conjugating enzyme, UBC
{Human (Homo sapiens), E2 M [TaxId: 9606]}
Length = 157
Score = 53.1 bits (127), Expect = 1e-09
Identities = 15/88 (17%), Positives = 36/88 (40%), Gaps = 6/88 (6%)
Query: 81 RLLEELEHGQRGVGDGTISWGLENDDDMTLTHWTGMIIGPPRTPYENRMYSLKIECGPRY 140
R+ +++ T + DD L ++ ++I P Y++ + + G Y
Sbjct: 7 RIQKDINELNL---PKTCDISFSDPDD--LLNFK-LVICPDEGFYKSGKFVFSFKVGQGY 60
Query: 141 PDEPPQCRFVSRINMTCINNTSGIVVVI 168
P +PP+ + + + I+ + + I
Sbjct: 61 PHDPPKVKCETMVYHPNIDLEGNVCLNI 88
>d2f4za1 d.20.1.1 (A:32-192) Hypothetical protein Tgtwinscan_2721,
E2 domain {Toxoplasma gondii [TaxId: 5811]}
Length = 161
Score = 53.3 bits (127), Expect = 1e-09
Identities = 27/94 (28%), Positives = 43/94 (45%), Gaps = 4/94 (4%)
Query: 70 LKLFSVVPRNFRLLEELEHGQRGVGDGTISWGLENDDDMTLTHWTGMIIGPPRTPYENRM 129
LK + + + R + G +S + D + W G I GP TPYE
Sbjct: 7 LKELADIQQLQRAHDSEPAATHSTSHG-VSAQIVGGD---IHRWRGFIAGPLGTPYEGGH 62
Query: 130 YSLKIECGPRYPDEPPQCRFVSRINMTCINNTSG 163
++L I P YP PP+ +FV++I I++ +G
Sbjct: 63 FTLDIVIPPDYPYNPPKMKFVTKIWHPNISSQTG 96
>d2z5da1 d.20.1.1 (A:23-174) Ubiquitin conjugating enzyme, UBC
{Human (Homo sapiens), E2 H [TaxId: 9606]}
Length = 152
Score = 52.4 bits (125), Expect = 2e-09
Identities = 17/74 (22%), Positives = 33/74 (44%)
Query: 110 LTHWTGMIIGPPRTPYENRMYSLKIECGPRYPDEPPQCRFVSRINMTCINNTSGIVVVIM 169
L + GP TPYE ++ ++++ +YP + P F+++I I+ SG V + +
Sbjct: 28 LNEFVVKFYGPQGTPYEGGVWKVRVDLPDKYPFKSPSIGFMNKIFHPNIDEASGTVCLDV 87
Query: 170 FWVMIEAKATHYPV 183
A +
Sbjct: 88 INQTWTALYDLTNI 101
>d1y6la_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Human
(Homo sapiens), ubch8 [TaxId: 9606]}
Length = 148
Score = 51.3 bits (122), Expect = 4e-09
Identities = 27/90 (30%), Positives = 42/90 (46%), Gaps = 4/90 (4%)
Query: 81 RLLEELEHGQRGVGDGTISWGLENDDDMTLTHWTGMIIGPPRTPYENRMYSLKIECGPRY 140
R+ +EL S G + D+ + W I+GPP + YE ++ L I P Y
Sbjct: 6 RIQKELAEITLDPPPN-CSAGPKGDN---IYEWRSTILGPPGSVYEGGVFFLDITFSPDY 61
Query: 141 PDEPPQCRFVSRINMTCINNTSGIVVVIMF 170
P +PP+ F +RI IN+ I + I+
Sbjct: 62 PFKPPKVTFRTRIYHCNINSQGVICLDILK 91
>d1ayza_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Baker's
yeast (Saccharomyces cerevisiae), ubc2 (RAD6) [TaxId:
4932]}
Length = 153
Score = 50.5 bits (120), Expect = 1e-08
Identities = 25/84 (29%), Positives = 40/84 (47%), Gaps = 4/84 (4%)
Query: 81 RLLEELEHGQRGVGDGTISWGLENDDDMTLTHWTGMIIGPPRTPYENRMYSLKIECGPRY 140
RL+ + + + G +S D+ M W MIIGP TPYE+ + L +E Y
Sbjct: 7 RLMRDFKRMKEDAPPG-VSASPLPDNVM---VWNAMIIGPADTPYEDGTFRLLLEFDEEY 62
Query: 141 PDEPPQCRFVSRINMTCINNTSGI 164
P++PP +F+S + + I
Sbjct: 63 PNKPPHVKFLSEMFHPNVYANGEI 86
>d2bepa1 d.20.1.1 (A:1-154) Ubiquitin-conjugating enzyme E2-25 kDa,
E2 domain {Cow (Bos taurus) [TaxId: 9913]}
Length = 154
Score = 50.2 bits (119), Expect = 1e-08
Identities = 26/93 (27%), Positives = 44/93 (47%), Gaps = 5/93 (5%)
Query: 81 RLLEELEHGQRG--VGDGTISWGLENDDDMTLTHWTGMIIGPPRTPYENRMYSLKIECGP 138
R+ E + + I L +++ T G I GPP TPYE Y L+I+
Sbjct: 8 RIKREFKEVLKSEETSKNQIKVDLVDEN---FTELRGEIAGPPDTPYEGGRYQLEIKIPE 64
Query: 139 RYPDEPPQCRFVSRINMTCINNTSGIVVVIMFW 171
YP PP+ RF+++I I++ +G + + +
Sbjct: 65 TYPFNPPKVRFITKIWHPNISSVTGAICLDILK 97
>d1yf9a1 d.20.1.1 (A:13-170) Ubiquitin conjugating enzyme, UBC
{Leishmania major [TaxId: 5664]}
Length = 158
Score = 49.3 bits (117), Expect = 3e-08
Identities = 14/57 (24%), Positives = 25/57 (43%)
Query: 103 ENDDDMTLTHWTGMIIGPPRTPYENRMYSLKIECGPRYPDEPPQCRFVSRINMTCIN 159
+ T+ + GP TPYE+ + L ++ YP + P F +RI ++
Sbjct: 18 KVYPSDTVAEFWVEFKGPEGTPYEDGTWMLHVQLPSDYPFKSPSIGFCNRILHPNVD 74
>d1yrva1 d.20.1.1 (A:1-148) Ubiquitin conjugating enzyme, UBC {Human
(Homo sapiens), E2 U [TaxId: 9606]}
Length = 148
Score = 49.0 bits (116), Expect = 3e-08
Identities = 13/79 (16%), Positives = 29/79 (36%), Gaps = 4/79 (5%)
Query: 81 RLLEELEHGQRGVGDGTISWGLENDDDMTLTHWTGMIIGPPRTPYENRMYSLKIECGPRY 140
L + + G I+ ++D + W I G + ++ ++ L I Y
Sbjct: 8 LLHRDFCDLKENNYKG-ITAKPVSED---MMEWEVEIEGLQNSVWQGLVFQLTIHFTSEY 63
Query: 141 PDEPPQCRFVSRINMTCIN 159
PP +F++ ++
Sbjct: 64 NYAPPVVKFITIPFHPNVD 82
>d1yh2a1 d.20.1.1 (A:1-154) Ubiquitin conjugating enzyme, UBC {Human
(Homo sapiens), E2 T [TaxId: 9606]}
Length = 154
Score = 48.7 bits (115), Expect = 4e-08
Identities = 26/84 (30%), Positives = 38/84 (45%), Gaps = 4/84 (4%)
Query: 78 RNFRLLEELEHGQRGVGDGTISWGLENDDDMTLTHWTGMIIGPPRTPYENRMYSLKIECG 137
R RL EL G I+ + D + I+G TPYE ++ L++
Sbjct: 3 RASRLKRELHMLATEPPPG-ITCWQDKDQ---MDDLRAQILGGANTPYEKGVFKLEVIIP 58
Query: 138 PRYPDEPPQCRFVSRINMTCINNT 161
RYP EPPQ RF++ I I++
Sbjct: 59 ERYPFEPPQIRFLTPIYHPNIDSA 82
>d1jata_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Baker's
yeast (Saccharomyces cerevisiae), ubc13 [TaxId: 4932]}
Length = 152
Score = 47.8 bits (113), Expect = 8e-08
Identities = 23/93 (24%), Positives = 46/93 (49%), Gaps = 4/93 (4%)
Query: 81 RLLEELEHGQRGVGDGTISWGLENDDDMTLTHWTGMIIGPPRTPYENRMYSLKIECGPRY 140
R+++E E G I+ +D+ L ++ I GP ++PYE+ ++ L++ Y
Sbjct: 7 RIIKETEKLVSDPVPG-ITAEPHDDN---LRYFQVTIEGPEQSPYEDGIFELELYLPDDY 62
Query: 141 PDEPPQCRFVSRINMTCINNTSGIVVVIMFWVM 173
P E P+ RF+++I I+ I + ++
Sbjct: 63 PMEAPKVRFLTKIYHPNIDRLGRICLDVLKTNW 95
>d1i7ka_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Human
(Homo sapiens), ubch10 [TaxId: 9606]}
Length = 146
Score = 47.5 bits (112), Expect = 1e-07
Identities = 26/85 (30%), Positives = 36/85 (42%), Gaps = 4/85 (4%)
Query: 77 PRNFRLLEELEHGQRGVGDGTISWGLENDDDMTLTHWTGMIIGPPRTPYENRMYSLKIEC 136
P RL +EL GD IS E+D+ L W G I G T YE+ Y L +E
Sbjct: 1 PVGKRLQQELMTLMMS-GDKGISAFPESDN---LFKWVGTIHGAAGTVYEDLRYKLSLEF 56
Query: 137 GPRYPDEPPQCRFVSRINMTCINNT 161
YP P +F++ ++
Sbjct: 57 PSGYPYNAPTVKFLTPCYHPNVDTQ 81
>d2e2ca_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Clam
(Spisula solidissima), E-2C [TaxId: 6584]}
Length = 156
Score = 47.4 bits (112), Expect = 1e-07
Identities = 23/81 (28%), Positives = 36/81 (44%), Gaps = 4/81 (4%)
Query: 81 RLLEELEHGQRGVGDGTISWGLENDDDMTLTHWTGMIIGPPRTPYENRMYSLKIECGPRY 140
RL +EL GD I+ + D+ L W + GP T YE+ Y L +E Y
Sbjct: 13 RLQQELRTLLMS-GDPGITAFPDGDN---LFKWVATLDGPKDTVYESLKYKLTLEFPSDY 68
Query: 141 PDEPPQCRFVSRINMTCINNT 161
P +PP +F + ++ +
Sbjct: 69 PYKPPVVKFTTPCWHPNVDQS 89
>d1c4zd_ d.20.1.1 (D:) Ubiquitin conjugating enzyme, UBC {Human
(Homo sapiens), ubch7 [TaxId: 9606]}
Length = 144
Score = 45.5 bits (107), Expect = 5e-07
Identities = 20/91 (21%), Positives = 42/91 (46%), Gaps = 4/91 (4%)
Query: 81 RLLEELEHGQRGVGDGTISWGLENDDDMTLTHWTGMIIGPPRTPYENRMYSLKIECGPRY 140
RL++ELE ++ + ++ + L W G+I P PY+ + ++I Y
Sbjct: 3 RLMKELEEIRKCGMKNFRNIQVDEAN---LLTWQGLI-VPDNPPYDKGAFRIEINFPAEY 58
Query: 141 PDEPPQCRFVSRINMTCINNTSGIVVVIMFW 171
P +PP+ F ++I I+ + + ++
Sbjct: 59 PFKPPKITFKTKIYHPNIDEKGQVCLPVISA 89
>d1zuoa1 d.20.1.1 (A:201-362) Ubiquitin-conjugating enzyme E2 Q2,
C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 162
Score = 46.0 bits (108), Expect = 5e-07
Identities = 17/97 (17%), Positives = 28/97 (28%), Gaps = 13/97 (13%)
Query: 81 RLLEELEHGQRGVGDGTISWGLENDDDMTLTHWTGMIIGPP------------RTPYENR 128
RL++EL R T + +E +D L W + +
Sbjct: 8 RLMKELRDIYRSQSYKTGIYSVELINDS-LYDWHVKLQKVDPDSPLHSDLQILKEKEGIE 66
Query: 129 MYSLKIECGPRYPDEPPQCRFVSRINMTCINNTSGIV 165
L +P +PP R V + G +
Sbjct: 67 YILLNFSFKDNFPFDPPFVRVVLPVLSGGYVLGGGAL 103
>d2f4wa1 d.20.1.1 (A:12-168) Ubiquitin conjugating enzyme, UBC
{Human (Homo sapiens), E2 J2 [TaxId: 9606]}
Length = 157
Score = 41.7 bits (97), Expect = 1e-05
Identities = 16/91 (17%), Positives = 33/91 (36%), Gaps = 4/91 (4%)
Query: 81 RLLEELEHGQRGVGDGTISWGLENDDDMTLTHWTGMIIGPPRTPYENRMYSLKIECGPRY 140
RL ++ ++ + L ++ + W ++ GP TPYE Y K+ +
Sbjct: 5 RLKQDYLRIKKDPVPYICAEPLPSN----ILEWHYVVRGPEMTPYEGGYYHGKLIFPREF 60
Query: 141 PDEPPQCRFVSRINMTCINNTSGIVVVIMFW 171
P +PP ++ N + +
Sbjct: 61 PFKPPSIYMITPNGRFKCNTRLCLSITDFHP 91
>d1s1qa_ d.20.1.2 (A:) Tumor susceptibility gene 101 (TSG101) {Human
(Homo sapiens) [TaxId: 9606]}
Length = 141
Score = 41.1 bits (96), Expect = 2e-05
Identities = 11/53 (20%), Positives = 17/53 (32%), Gaps = 2/53 (3%)
Query: 110 LTHWTGMIIGPPRTPYENRMYSL--KIECGPRYPDEPPQCRFVSRINMTCINN 160
+ + G PY Y++ + YP PP C +MT
Sbjct: 46 SSRELMNLTGTIPVPYRGNTYNIPICLWLLDTYPYNPPICFVKPTSSMTIKTG 98
>d2ucza_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Baker's
yeast (Saccharomyces cerevisiae), ubc7 [TaxId: 4932]}
Length = 164
Score = 40.9 bits (95), Expect = 2e-05
Identities = 26/88 (29%), Positives = 44/88 (50%), Gaps = 3/88 (3%)
Query: 81 RLLEELEHGQRGVGDGTISWGLENDDDMTLTHWTGMIIGPPRTPYENRMYSLKIECGPRY 140
RLL+EL+ + G I G ++++++ W +I GPP TPY + +++ K+E Y
Sbjct: 7 RLLKELQQLIKDSPPG-IVAGPKSENNIF--IWDCLIQGPPDTPYADGVFNAKLEFPKDY 63
Query: 141 PDEPPQCRFVSRINMTCINNTSGIVVVI 168
P PP+ F I I + + I
Sbjct: 64 PLSPPKLTFTPSILHPNIYPNGEVCISI 91
>d1zdna1 d.20.1.1 (A:6-156) Ubiquitin conjugating enzyme, UBC
{Human(Homo sapiens), E2 S [TaxId: 9606]}
Length = 151
Score = 40.5 bits (94), Expect = 3e-05
Identities = 20/81 (24%), Positives = 34/81 (41%), Gaps = 4/81 (4%)
Query: 81 RLLEELEHGQRGVGDGTISWGLENDDDMTLTHWTGMIIGPPRTPYENRMYSLKIECGPRY 140
+ +E+ DG + E D LT I GP TPY ++ +K+ G +
Sbjct: 10 LVYKEVTTLTADPPDGIKVFPNEED----LTDLQVTIEGPEGTPYAGGLFRMKLLLGKDF 65
Query: 141 PDEPPQCRFVSRINMTCINNT 161
P PP+ F+++I +
Sbjct: 66 PASPPKGYFLTKIFHPNVGAN 86
>d3ehwa1 b.85.4.1 (A:24-159) Deoxyuridine 5'-triphosphate
nucleotidohydrolase (dUTPase) {Human (Homo sapiens)
[TaxId: 9606]}
Length = 136
Score = 28.6 bits (63), Expect = 0.32
Identities = 11/79 (13%), Positives = 22/79 (27%), Gaps = 4/79 (5%)
Query: 20 YQIQMKGIKKITLKHSINICALRIFHQESSTILVCFHKENYPFCTNFH----CYLKLFSV 75
++ + KH I++ A I + V L +
Sbjct: 55 CYGRVAPRSGLAAKHFIDVGAGVIDEDYRGNVGVVLFNFGKEKFEVKKGDRIAQLICERI 114
Query: 76 VPRNFRLLEELEHGQRGVG 94
++ L+ +RG G
Sbjct: 115 FYPEIEEVQALDDTERGSG 133
>d1uzxa_ d.20.1.2 (A:) Vacuolar protein sorting-associated {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 152
Score = 28.4 bits (63), Expect = 0.47
Identities = 10/73 (13%), Positives = 19/73 (26%), Gaps = 7/73 (9%)
Query: 96 GTISWGLENDDDMTLTHWTGMIIGPPRTPYENRMYS---LKIECGPRYPDEPPQCRFVSR 152
T + + L G I T + + + YP +PP
Sbjct: 41 RTRVFTHSDGTPQLLLSIYGTI----STGEDGSSPHSIPVIMWVPSMYPVKPPFISINLE 96
Query: 153 INMTCINNTSGIV 165
++S +
Sbjct: 97 NFDMNTISSSLPI 109
>d1ffya3 c.26.1.1 (A:1-200,A:395-644) Isoleucyl-tRNA synthetase
(IleRS) {Staphylococcus aureus [TaxId: 1280]}
Length = 450
Score = 27.2 bits (59), Expect = 1.7
Identities = 22/209 (10%), Positives = 45/209 (21%), Gaps = 4/209 (1%)
Query: 7 FAHRHRVFAPYLLYQIQMKGIKKITLKHSINICALRIFHQESSTILVCFHKENYPFCTNF 66
++ + + +I H IF
Sbjct: 175 LIYKGKKPVYWSPSSESSLAEAEIEYPHDWRTKKPVIFRATPQWFASISKVRQDILDAIE 234
Query: 67 HCYLKLFSVVPRNFRLLEELEHG----QRGVGDGTISWGLENDDDMTLTHWTGMIIGPPR 122
+ K+ R + ++ + QR G + EN + + +
Sbjct: 235 NTNFKVNWGKTRIYNMVRDRGEWVISRQRVWGVPLPVFYAENGEIIMTKETVNHVADLFA 294
Query: 123 TPYENRMYSLKIECGPRYPDEPPQCRFVSRINMTCINNTSGIVVVIMFWVMIEAKATHYP 182
N + + + P + T I + V+ +P
Sbjct: 295 EHGSNIWFEREAKDLLPEGFTHPGSPNGTFTKETDIMDVWFDSGSSHRGVLETRPELSFP 354
Query: 183 VDLKTGTPDQVYLIVCVLIRYQVDLTDRP 211
D+ DQ I V
Sbjct: 355 ADMYLEGSDQYRGWFNSSITTSVATRGVS 383
>d3bzna1 d.161.1.1 (A:2-429) Menaquinone-specific isochorismate
synthase MenF {Escherichia coli [TaxId: 562]}
Length = 428
Score = 26.7 bits (58), Expect = 2.4
Identities = 6/76 (7%), Positives = 17/76 (22%), Gaps = 7/76 (9%)
Query: 43 IFHQESSTILVCFHKENYPFCTNFHCYLKLFSVVP-------RNFRLLEELEHGQRGVGD 95
+ L + + C +L + + E R
Sbjct: 309 VLRLRKVQHLRRCIWTSLNKADDVICLHQLQPTAAVAGLPRDLARQFIARHEPFTREWYA 368
Query: 96 GTISWGLENDDDMTLT 111
G+ + + ++
Sbjct: 369 GSAGYLSLQQSEFCVS 384
>d1ddma_ b.55.1.2 (A:) Numb {Fruit fly (Drosophila melanogaster)
[TaxId: 7227]}
Length = 135
Score = 25.3 bits (55), Expect = 4.1
Identities = 10/59 (16%), Positives = 24/59 (40%)
Query: 21 QIQMKGIKKITLKHSINICALRIFHQESSTILVCFHKENYPFCTNFHCYLKLFSVVPRN 79
++ + + ++ LR+ E+ ++V E FC + + FS + R+
Sbjct: 42 VLRQSRRRPVRGLLHVSGDGLRVVDDETKGLIVDQTIEKVSFCAPDRNHERGFSYICRD 100
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.326 0.141 0.461
Gapped
Lambda K H
0.267 0.0488 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 932,616
Number of extensions: 44386
Number of successful extensions: 145
Number of sequences better than 10.0: 1
Number of HSP's gapped: 142
Number of HSP's successfully gapped: 40
Length of query: 226
Length of database: 2,407,596
Length adjustment: 82
Effective length of query: 144
Effective length of database: 1,281,736
Effective search space: 184569984
Effective search space used: 184569984
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 51 (24.0 bits)