BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy15035
(816 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2HLW|A Chain A, Solution Structure Of The Human Ubiquitin-Conjugating
Enzyme Variant Uev1a
Length = 170
Score = 102 bits (253), Expect = 1e-21, Method: Composition-based stats.
Identities = 50/72 (69%), Positives = 58/72 (80%), Gaps = 3/72 (4%)
Query: 499 KSKLSPFKTKLSSQKFSGAKVLLIVPRNFRLLEELEHGQRGVGDGTISWGLENDDDMTLT 558
+SKLS + +L +KF V VPRNFRLLEELE GQ+GVGDGT+SWGLE+D+DMTLT
Sbjct: 13 QSKLSD-EGRLEPRKFHCKGVK--VPRNFRLLEELEEGQKGVGDGTVSWGLEDDEDMTLT 69
Query: 559 HWTGMIIGPPRT 570
WTGMIIGPPRT
Sbjct: 70 RWTGMIIGPPRT 81
>pdb|2A4D|A Chain A, Structure Of The Human Ubiquitin-Conjugating Enzyme E2
Variant 1 (Uev- 1)
Length = 160
Score = 101 bits (251), Expect = 2e-21, Method: Composition-based stats.
Identities = 42/48 (87%), Positives = 46/48 (95%)
Query: 523 VPRNFRLLEELEHGQRGVGDGTISWGLENDDDMTLTHWTGMIIGPPRT 570
VPRNFRLLEELE GQ+GVGDGT+SWGLE+D+DMTLT WTGMIIGPPRT
Sbjct: 24 VPRNFRLLEELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRT 71
>pdb|3VON|B Chain B, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|D Chain D, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|F Chain F, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|I Chain I, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|K Chain K, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|M Chain M, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|P Chain P, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|R Chain R, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|T Chain T, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|W Chain W, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|Y Chain Y, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|AA Chain a, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|DD Chain d, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|FF Chain f, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|HH Chain h, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|KK Chain k, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|MM Chain m, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|OO Chain o, Crystalstructure Of The Ubiquitin Protease
Length = 138
Score = 100 bits (250), Expect = 3e-21, Method: Composition-based stats.
Identities = 43/54 (79%), Positives = 48/54 (88%)
Query: 523 VPRNFRLLEELEHGQRGVGDGTISWGLENDDDMTLTHWTGMIIGPPRTSTTGHI 576
VPRNFRLLEELE GQ+GVGDGT+SWGLE+D+DMTLT WTGMIIGPPRT+ I
Sbjct: 4 VPRNFRLLEELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTNYENRI 57
>pdb|4EPO|A Chain A, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|E Chain E, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|I Chain I, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
Length = 149
Score = 100 bits (250), Expect = 3e-21, Method: Composition-based stats.
Identities = 43/54 (79%), Positives = 48/54 (88%)
Query: 523 VPRNFRLLEELEHGQRGVGDGTISWGLENDDDMTLTHWTGMIIGPPRTSTTGHI 576
VPRNFRLLEELE GQ+GVGDGT+SWGLE+D+DMTLT WTGMIIGPPRT+ I
Sbjct: 14 VPRNFRLLEELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTNYENRI 67
>pdb|1ZGU|A Chain A, Solution Structure Of The Human Mms2-Ubiquitin Complex
Length = 139
Score = 100 bits (250), Expect = 3e-21, Method: Composition-based stats.
Identities = 43/54 (79%), Positives = 48/54 (88%)
Query: 523 VPRNFRLLEELEHGQRGVGDGTISWGLENDDDMTLTHWTGMIIGPPRTSTTGHI 576
VPRNFRLLEELE GQ+GVGDGT+SWGLE+D+DMTLT WTGMIIGPPRT+ I
Sbjct: 3 VPRNFRLLEELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTNYENRI 56
>pdb|1J74|A Chain A, Crystal Structure Of Mms2
pdb|1J7D|A Chain A, Crystal Structure Of Hmms2-Hubc13
Length = 145
Score = 100 bits (250), Expect = 3e-21, Method: Composition-based stats.
Identities = 43/54 (79%), Positives = 48/54 (88%)
Query: 523 VPRNFRLLEELEHGQRGVGDGTISWGLENDDDMTLTHWTGMIIGPPRTSTTGHI 576
VPRNFRLLEELE GQ+GVGDGT+SWGLE+D+DMTLT WTGMIIGPPRT+ I
Sbjct: 9 VPRNFRLLEELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTNYENRI 62
>pdb|2C2V|C Chain C, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
pdb|2C2V|F Chain F, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
pdb|2C2V|I Chain I, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
pdb|2C2V|L Chain L, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
Length = 142
Score = 99.4 bits (246), Expect = 7e-21, Method: Composition-based stats.
Identities = 41/48 (85%), Positives = 46/48 (95%)
Query: 523 VPRNFRLLEELEHGQRGVGDGTISWGLENDDDMTLTHWTGMIIGPPRT 570
VPRNFRLLEELE GQ+GVGDGT+SWGLE+D+DMTLT WTGMI+GPPRT
Sbjct: 6 VPRNFRLLEELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMILGPPRT 53
>pdb|2GMI|B Chain B, Mms2UBC13~UBIQUITIN
Length = 137
Score = 68.9 bits (167), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 29/54 (53%), Positives = 39/54 (72%)
Query: 523 VPRNFRLLEELEHGQRGVGDGTISWGLENDDDMTLTHWTGMIIGPPRTSTTGHI 576
VPRNFRLLEELE G++G G + S+GL + DD+T+T W G I+GPP ++ I
Sbjct: 4 VPRNFRLLEELEKGEKGFGPESCSYGLADSDDITMTKWNGTILGPPHSNHENRI 57
>pdb|1JAT|B Chain B, Mms2UBC13 UBIQUITIN CONJUGATING ENZYME COMPLEX
Length = 138
Score = 68.9 bits (167), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 29/54 (53%), Positives = 39/54 (72%)
Query: 523 VPRNFRLLEELEHGQRGVGDGTISWGLENDDDMTLTHWTGMIIGPPRTSTTGHI 576
VPRNFRLLEELE G++G G + S+GL + DD+T+T W G I+GPP ++ I
Sbjct: 5 VPRNFRLLEELEKGEKGFGPESCSYGLADSDDITMTKWNGTILGPPHSNHENRI 58
>pdb|3E95|C Chain C, Crystal Structure Of The Plasmodium Falciparum Ubiquitin
Conjugating Enzyme Complex, Pfubc13-Pfuev1a
Length = 158
Score = 60.5 bits (145), Expect = 3e-09, Method: Composition-based stats.
Identities = 27/50 (54%), Positives = 38/50 (76%)
Query: 521 LIVPRNFRLLEELEHGQRGVGDGTISWGLENDDDMTLTHWTGMIIGPPRT 570
+IVPR+FRLL+ELE GQ+G +S+GLE+ DD+TL++W+ I G P T
Sbjct: 22 VIVPRSFRLLDELERGQKGNVSEGVSFGLESADDITLSNWSCTIFGQPGT 71
>pdb|2Q0V|A Chain A, Crystal Structure Of Ubiquitin Conjugating Enzyme E2,
Putative, From Plasmodium Falciparum
Length = 156
Score = 60.5 bits (145), Expect = 4e-09, Method: Composition-based stats.
Identities = 27/49 (55%), Positives = 37/49 (75%)
Query: 522 IVPRNFRLLEELEHGQRGVGDGTISWGLENDDDMTLTHWTGMIIGPPRT 570
IVPR+FRLL+ELE GQ+G +S+GLE+ DD+TL++W+ I G P T
Sbjct: 19 IVPRSFRLLDELERGQKGNVSEGVSFGLESADDITLSNWSCTIFGQPGT 67
>pdb|2K25|A Chain A, Automated Nmr Structure Of The Ubb By Fapsy
pdb|2KX0|A Chain A, The Solution Structure Of Ubb+1, Frameshift Mutant Of
Ubiquitin B
Length = 103
Score = 59.3 bits (142), Expect = 9e-09, Method: Composition-based stats.
Identities = 28/74 (37%), Positives = 48/74 (64%)
Query: 601 PDNTLMINIKSNTGNTVCVNLDPASDIRNVKEMIAPKLGLKYEEVKIIFAGKELEDTTII 660
P ++ I +K+ TG T+ + ++P+ I NVK I K G+ ++ ++IFAGK+LED +
Sbjct: 5 PRGSMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL 64
Query: 661 SECDLGQQSILHAV 674
SE ++ ++S LH V
Sbjct: 65 SEYNIQKESTLHLV 78
>pdb|1IYF|A Chain A, Solution Structure Of Ubiquitin-Like Domain Of Human
Parkin
Length = 81
Score = 58.5 bits (140), Expect = 2e-08, Method: Composition-based stats.
Identities = 25/75 (33%), Positives = 49/75 (65%)
Query: 601 PDNTLMINIKSNTGNTVCVNLDPASDIRNVKEMIAPKLGLKYEEVKIIFAGKELEDTTII 660
P ++++ ++ N+ + V +D + I +KE++A + G+ +++++IFAGKEL + +
Sbjct: 2 PLGSMIVFVRFNSSHGFPVEVDSDTSIFQLKEVVAKRQGVPADQLRVIFAGKELRNDWTV 61
Query: 661 SECDLGQQSILHAVK 675
CDL QQSI+H V+
Sbjct: 62 QNCDLDQQSIVHIVQ 76
>pdb|2KNB|A Chain A, Solution Nmr Structure Of The Parkin Ubl Domain In Complex
With The Endophilin-A1 Sh3 Domain
Length = 81
Score = 58.2 bits (139), Expect = 2e-08, Method: Composition-based stats.
Identities = 25/75 (33%), Positives = 49/75 (65%)
Query: 601 PDNTLMINIKSNTGNTVCVNLDPASDIRNVKEMIAPKLGLKYEEVKIIFAGKELEDTTII 660
P ++++ ++ N+ V +D + I +KE++A + G+ +++++IFAGKEL++ +
Sbjct: 2 PLGSMIVFVRFNSSYGFPVEVDSDTSIFQLKEVVAKRQGVPADQLRVIFAGKELQNHLTV 61
Query: 661 SECDLGQQSILHAVK 675
CDL QQSI+H V+
Sbjct: 62 QNCDLEQQSIVHIVQ 76
>pdb|2OJR|A Chain A, Structure Of Ubiquitin Solved By Sad Using The Lanthanide-
Binding Tag
Length = 111
Score = 57.4 bits (137), Expect = 3e-08, Method: Composition-based stats.
Identities = 28/79 (35%), Positives = 48/79 (60%)
Query: 596 WISRKPDNTLMINIKSNTGNTVCVNLDPASDIRNVKEMIAPKLGLKYEEVKIIFAGKELE 655
WI + I +K+ TG T+ + ++P+ I NVK I K G+ ++ ++IFAGK+LE
Sbjct: 27 WIEGDELLAMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLE 86
Query: 656 DTTIISECDLGQQSILHAV 674
D +S+ ++ ++S LH V
Sbjct: 87 DGRTLSDYNIQKESTLHLV 105
>pdb|3VDZ|A Chain A, Tailoring Encodable Lanthanide-Binding Tags As Mri
Contrast Agents: Xq-Dse3-Ubiquitin At 2.4 Angstroms
pdb|3VDZ|B Chain B, Tailoring Encodable Lanthanide-Binding Tags As Mri
Contrast Agents: Xq-Dse3-Ubiquitin At 2.4 Angstroms
Length = 111
Score = 56.2 bits (134), Expect = 8e-08, Method: Composition-based stats.
Identities = 26/70 (37%), Positives = 46/70 (65%)
Query: 605 LMINIKSNTGNTVCVNLDPASDIRNVKEMIAPKLGLKYEEVKIIFAGKELEDTTIISECD 664
+ I +K+ TG T+ + ++P+ I NVK I K G+ ++ ++IFAGK+LED +S+ +
Sbjct: 36 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 95
Query: 665 LGQQSILHAV 674
+ ++S LH V
Sbjct: 96 IQKESTLHLV 105
>pdb|3JVZ|X Chain X, E2~ubiquitin-Hect
pdb|3JVZ|Y Chain Y, E2~ubiquitin-Hect
pdb|3JW0|X Chain X, E2~ubiquitin-Hect
pdb|3JW0|Y Chain Y, E2~ubiquitin-Hect
pdb|4AUQ|C Chain C, Structure Of Birc7-Ubch5b-Ub Complex.
pdb|4AUQ|F Chain F, Structure Of Birc7-Ubch5b-Ub Complex
Length = 81
Score = 55.8 bits (133), Expect = 8e-08, Method: Composition-based stats.
Identities = 26/71 (36%), Positives = 47/71 (66%)
Query: 604 TLMINIKSNTGNTVCVNLDPASDIRNVKEMIAPKLGLKYEEVKIIFAGKELEDTTIISEC 663
++ I +K+ TG T+ + ++P+ I NVK I K G+ ++ ++IFAGK+LED +S+
Sbjct: 5 SMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDY 64
Query: 664 DLGQQSILHAV 674
++ ++S LH V
Sbjct: 65 NIQKESTLHLV 75
>pdb|2ZCB|A Chain A, Crystal Structure Of Ubiquitin P37aP38A
pdb|2ZCB|B Chain B, Crystal Structure Of Ubiquitin P37aP38A
pdb|2ZCB|C Chain C, Crystal Structure Of Ubiquitin P37aP38A
Length = 76
Score = 55.8 bits (133), Expect = 8e-08, Method: Composition-based stats.
Identities = 26/70 (37%), Positives = 46/70 (65%)
Query: 605 LMINIKSNTGNTVCVNLDPASDIRNVKEMIAPKLGLKYEEVKIIFAGKELEDTTIISECD 664
+ I +K+ TG T+ + ++P+ I NVK I K G+ ++ ++IFAGK+LED +S+ +
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIAADQQRLIFAGKQLEDGRTLSDYN 60
Query: 665 LGQQSILHAV 674
+ ++S LH V
Sbjct: 61 IQKESTLHLV 70
>pdb|1YIW|A Chain A, X-Ray Crystal Structure Of A Chemically Synthesized
Ubiquitin
pdb|1YIW|B Chain B, X-Ray Crystal Structure Of A Chemically Synthesized
Ubiquitin
pdb|1YIW|C Chain C, X-Ray Crystal Structure Of A Chemically Synthesized
Ubiquitin
pdb|2FCQ|A Chain A, X-Ray Crystal Structure Of A Chemically Synthesized
Ubiquitin With A Cubic Space Group
pdb|2FCQ|B Chain B, X-Ray Crystal Structure Of A Chemically Synthesized
Ubiquitin With A Cubic Space Group
Length = 76
Score = 55.8 bits (133), Expect = 1e-07, Method: Composition-based stats.
Identities = 27/70 (38%), Positives = 46/70 (65%)
Query: 605 LMINIKSNTGNTVCVNLDPASDIRNVKEMIAPKLGLKYEEVKIIFAGKELEDTTIISECD 664
L I +K+ TG T+ + ++P+ I NVK I K G+ ++ ++IFAGK+LED +S+ +
Sbjct: 1 LQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 665 LGQQSILHAV 674
+ ++S LH V
Sbjct: 61 IQKESTLHLV 70
>pdb|3Q3F|A Chain A, Engineering Domain-Swapped Binding Interfaces By Mutually
Exclusive Folding: Insertion Of Ubiquitin Into Position
103 Of Barnase
Length = 189
Score = 55.8 bits (133), Expect = 1e-07, Method: Composition-based stats.
Identities = 26/68 (38%), Positives = 45/68 (66%)
Query: 607 INIKSNTGNTVCVNLDPASDIRNVKEMIAPKLGLKYEEVKIIFAGKELEDTTIISECDLG 666
I +K+ TG T+ + ++P+ I NVK I K G+ ++ ++IFAGK+LED +S+ ++
Sbjct: 108 IFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQ 167
Query: 667 QQSILHAV 674
++S LH V
Sbjct: 168 KESTLHLV 175
>pdb|2ZVN|A Chain A, Nemo Cozi Domain Incomplex With Diubiquitin In P212121
Space Group
pdb|2ZVN|G Chain G, Nemo Cozi Domain Incomplex With Diubiquitin In P212121
Space Group
pdb|2ZVN|C Chain C, Nemo Cozi Domain Incomplex With Diubiquitin In P212121
Space Group
pdb|2ZVN|E Chain E, Nemo Cozi Domain Incomplex With Diubiquitin In P212121
Space Group
pdb|2ZVO|A Chain A, Nemo Cozi Domain In Complex With Diubiquitin In C2 Space
Group
pdb|2ZVO|G Chain G, Nemo Cozi Domain In Complex With Diubiquitin In C2 Space
Group
pdb|3AXC|A Chain A, Crystal Structure Of Linear Diubiquitin
Length = 154
Score = 55.5 bits (132), Expect = 1e-07, Method: Composition-based stats.
Identities = 26/71 (36%), Positives = 47/71 (66%)
Query: 604 TLMINIKSNTGNTVCVNLDPASDIRNVKEMIAPKLGLKYEEVKIIFAGKELEDTTIISEC 663
++ I +K+ TG T+ + ++P+ I NVK I K G+ ++ ++IFAGK+LED +S+
Sbjct: 2 SMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDY 61
Query: 664 DLGQQSILHAV 674
++ ++S LH V
Sbjct: 62 NIQKESTLHLV 72
Score = 55.1 bits (131), Expect = 2e-07, Method: Composition-based stats.
Identities = 26/70 (37%), Positives = 46/70 (65%)
Query: 605 LMINIKSNTGNTVCVNLDPASDIRNVKEMIAPKLGLKYEEVKIIFAGKELEDTTIISECD 664
+ I +K+ TG T+ + ++P+ I NVK I K G+ ++ ++IFAGK+LED +S+ +
Sbjct: 79 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 138
Query: 665 LGQQSILHAV 674
+ ++S LH V
Sbjct: 139 IQKESTLHLV 148
>pdb|3AI5|A Chain A, Crystal Structure Of Yeast Enhanced Green Fluorescent
Protein- Ubiquitin Fusion Protein
Length = 307
Score = 55.5 bits (132), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 47/71 (66%)
Query: 604 TLMINIKSNTGNTVCVNLDPASDIRNVKEMIAPKLGLKYEEVKIIFAGKELEDTTIISEC 663
++ I +K+ TG T+ + ++P+ I NVK I K G+ ++ ++IFAGK+LED +S+
Sbjct: 233 SMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDY 292
Query: 664 DLGQQSILHAV 674
++ ++S LH V
Sbjct: 293 NIQKESTLHLV 303
>pdb|4AP4|C Chain C, Rnf4 - Ubch5a - Ubiquitin Heterotrimeric Complex
pdb|4AP4|F Chain F, Rnf4 - Ubch5a - Ubiquitin Heterotrimeric Complex
Length = 80
Score = 55.5 bits (132), Expect = 1e-07, Method: Composition-based stats.
Identities = 26/70 (37%), Positives = 46/70 (65%)
Query: 605 LMINIKSNTGNTVCVNLDPASDIRNVKEMIAPKLGLKYEEVKIIFAGKELEDTTIISECD 664
+ I +K+ TG T+ + ++P+ I NVK I K G+ ++ ++IFAGK+LED +S+ +
Sbjct: 5 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 64
Query: 665 LGQQSILHAV 674
+ ++S LH V
Sbjct: 65 IQKESTLHLV 74
>pdb|2LD9|A Chain A, Backbone Structure Of Ubiquitin Determined Using Backbone
Amide Noes And Backbone N-H And N-C Rdcs
Length = 77
Score = 55.5 bits (132), Expect = 1e-07, Method: Composition-based stats.
Identities = 26/70 (37%), Positives = 46/70 (65%)
Query: 605 LMINIKSNTGNTVCVNLDPASDIRNVKEMIAPKLGLKYEEVKIIFAGKELEDTTIISECD 664
+ I +K+ TG T+ + ++P+ I NVK I K G+ ++ ++IFAGK+LED +S+ +
Sbjct: 2 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 61
Query: 665 LGQQSILHAV 674
+ ++S LH V
Sbjct: 62 IQKESTLHLV 71
>pdb|2ZEQ|A Chain A, Crystal Structure Of Ubiquitin-Like Domain Of Murine
Parkin
pdb|1MG8|A Chain A, Nmr Structure Of Ubiquitin-Like Domain In Murine Parkin
Length = 78
Score = 55.1 bits (131), Expect = 1e-07, Method: Composition-based stats.
Identities = 24/71 (33%), Positives = 46/71 (64%)
Query: 605 LMINIKSNTGNTVCVNLDPASDIRNVKEMIAPKLGLKYEEVKIIFAGKELEDTTIISECD 664
+++ ++ N+ V +D + I +KE++A + G+ +++++IFAGKEL + + CD
Sbjct: 3 MIVFVRFNSSYGFPVEVDSDTSILQLKEVVAKRQGVPADQLRVIFAGKELPNHLTVQNCD 62
Query: 665 LGQQSILHAVK 675
L QQSI+H V+
Sbjct: 63 LEQQSIVHIVQ 73
>pdb|3U30|A Chain A, Crystal Structure Of A Linear-Specific Ubiquitin Fab Bound
To Linear Ubiquitin
pdb|3U30|D Chain D, Crystal Structure Of A Linear-Specific Ubiquitin Fab Bound
To Linear Ubiquitin
Length = 172
Score = 55.1 bits (131), Expect = 1e-07, Method: Composition-based stats.
Identities = 26/70 (37%), Positives = 46/70 (65%)
Query: 605 LMINIKSNTGNTVCVNLDPASDIRNVKEMIAPKLGLKYEEVKIIFAGKELEDTTIISECD 664
+ I +K+ TG T+ + ++P+ I NVK I K G+ ++ ++IFAGK+LED +S+ +
Sbjct: 21 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 80
Query: 665 LGQQSILHAV 674
+ ++S LH V
Sbjct: 81 IQKESTLHLV 90
Score = 55.1 bits (131), Expect = 1e-07, Method: Composition-based stats.
Identities = 26/70 (37%), Positives = 46/70 (65%)
Query: 605 LMINIKSNTGNTVCVNLDPASDIRNVKEMIAPKLGLKYEEVKIIFAGKELEDTTIISECD 664
+ I +K+ TG T+ + ++P+ I NVK I K G+ ++ ++IFAGK+LED +S+ +
Sbjct: 97 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 156
Query: 665 LGQQSILHAV 674
+ ++S LH V
Sbjct: 157 IQKESTLHLV 166
>pdb|1SIF|A Chain A, Crystal Structure Of A Multiple Hydrophobic Core Mutant Of
Ubiquitin
Length = 88
Score = 55.1 bits (131), Expect = 1e-07, Method: Composition-based stats.
Identities = 27/70 (38%), Positives = 45/70 (64%)
Query: 605 LMINIKSNTGNTVCVNLDPASDIRNVKEMIAPKLGLKYEEVKIIFAGKELEDTTIISECD 664
L + IK+ TG T V ++P+ I N+K I K G+ ++ ++IFAGK+LED +S+ +
Sbjct: 10 LQLFIKTLTGKTFTVEMEPSDTIENLKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 69
Query: 665 LGQQSILHAV 674
+ ++S LH V
Sbjct: 70 IQKESTLHLV 79
>pdb|3K9O|B Chain B, The Crystal Structure Of E2-25k And Ubb+1 Complex
Length = 96
Score = 55.1 bits (131), Expect = 1e-07, Method: Composition-based stats.
Identities = 26/70 (37%), Positives = 46/70 (65%)
Query: 605 LMINIKSNTGNTVCVNLDPASDIRNVKEMIAPKLGLKYEEVKIIFAGKELEDTTIISECD 664
+ I +K+ TG T+ + ++P+ I NVK I K G+ ++ ++IFAGK+LED +S+ +
Sbjct: 2 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 61
Query: 665 LGQQSILHAV 674
+ ++S LH V
Sbjct: 62 IQKESTLHLV 71
>pdb|2XK5|B Chain B, Crystal Structure Of K6-Linked Diubiquitin
Length = 76
Score = 55.1 bits (131), Expect = 2e-07, Method: Composition-based stats.
Identities = 26/70 (37%), Positives = 46/70 (65%)
Query: 605 LMINIKSNTGNTVCVNLDPASDIRNVKEMIAPKLGLKYEEVKIIFAGKELEDTTIISECD 664
+ I +K+ TG T+ + ++P+ I NVK I K G+ ++ ++IFAGK+LED +S+ +
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPQQQRLIFAGKQLEDGRTLSDYN 60
Query: 665 LGQQSILHAV 674
+ ++S LH V
Sbjct: 61 IQKESTLHLV 70
>pdb|2ZNV|B Chain B, Crystal Structure Of Human Amsh-Lp Dub Domain In Complex
With Lys63-Linked Ubiquitin Dimer
pdb|2ZNV|E Chain E, Crystal Structure Of Human Amsh-Lp Dub Domain In Complex
With Lys63-Linked Ubiquitin Dimer
pdb|3A1Q|B Chain B, Crystal Structure Of The Mouse Rap80 Uims In Complex With
Lys63-Linked Di-Ubiquitin
pdb|3A1Q|E Chain E, Crystal Structure Of The Mouse Rap80 Uims In Complex With
Lys63-Linked Di-Ubiquitin
pdb|3H7P|A Chain A, Crystal Structure Of K63-Linked Di-Ubiquitin
pdb|3JSV|A Chain A, Crystal Structure Of Mouse Nemo Cozi In Complex With
Lys63- Linked Di-Ubiquitin
pdb|3A9J|A Chain A, Crystal Structure Of The Mouse Tab2-Nzf In Complex With
Lys63-Linked Di-Ubiquitin
pdb|3A9K|A Chain A, Crystal Structure Of The Mouse Tab3-Nzf In Complex With
Lys63-Linked Di-Ubiquitin
Length = 76
Score = 55.1 bits (131), Expect = 2e-07, Method: Composition-based stats.
Identities = 26/70 (37%), Positives = 46/70 (65%)
Query: 605 LMINIKSNTGNTVCVNLDPASDIRNVKEMIAPKLGLKYEEVKIIFAGKELEDTTIISECD 664
+ I +K+ TG T+ + ++P+ I NVK I K G+ ++ ++IFAGK+LED +S+ +
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 665 LGQQSILHAV 674
+ ++S LH V
Sbjct: 61 IQRESTLHLV 70
>pdb|3DVG|Y Chain Y, Crystal Structure Of K63-Specific Fab Apu.3a8 Bound To
K63-Linked Di- Ubiquitin
pdb|3DVN|Y Chain Y, Crystal Structure Of K63-specific Fab Apu2.16 Bound To
K63-linked Di- Ubiquitin
pdb|3DVN|V Chain V, Crystal Structure Of K63-specific Fab Apu2.16 Bound To
K63-linked Di- Ubiquitin
Length = 79
Score = 55.1 bits (131), Expect = 2e-07, Method: Composition-based stats.
Identities = 26/70 (37%), Positives = 46/70 (65%)
Query: 605 LMINIKSNTGNTVCVNLDPASDIRNVKEMIAPKLGLKYEEVKIIFAGKELEDTTIISECD 664
+ I +K+ TG T+ + ++P+ I NVK I K G+ ++ ++IFAGK+LED +S+ +
Sbjct: 4 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 63
Query: 665 LGQQSILHAV 674
+ ++S LH V
Sbjct: 64 IQRESTLHLV 73
>pdb|2W9N|A Chain A, Crystal Structure Of Linear Di-Ubiquitin
Length = 152
Score = 55.1 bits (131), Expect = 2e-07, Method: Composition-based stats.
Identities = 26/70 (37%), Positives = 46/70 (65%)
Query: 605 LMINIKSNTGNTVCVNLDPASDIRNVKEMIAPKLGLKYEEVKIIFAGKELEDTTIISECD 664
+ I +K+ TG T+ + ++P+ I NVK I K G+ ++ ++IFAGK+LED +S+ +
Sbjct: 77 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 136
Query: 665 LGQQSILHAV 674
+ ++S LH V
Sbjct: 137 IQKESTLHLV 146
Score = 54.3 bits (129), Expect = 3e-07, Method: Composition-based stats.
Identities = 26/68 (38%), Positives = 45/68 (66%)
Query: 607 INIKSNTGNTVCVNLDPASDIRNVKEMIAPKLGLKYEEVKIIFAGKELEDTTIISECDLG 666
I +K+ TG T+ + ++P+ I NVK I K G+ ++ ++IFAGK+LED +S+ ++
Sbjct: 3 IFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQ 62
Query: 667 QQSILHAV 674
++S LH V
Sbjct: 63 KESTLHLV 70
>pdb|1AAR|A Chain A, Structure Of A Diubiquitin Conjugate And A Model For
Interaction With Ubiquitin Conjugating Enzyme (E2)
pdb|1AAR|B Chain B, Structure Of A Diubiquitin Conjugate And A Model For
Interaction With Ubiquitin Conjugating Enzyme (E2)
pdb|1TBE|A Chain A, Structure Of Tetraubiquitin Shows How Multiubiquitin
Chains Can Be Formed
pdb|1TBE|B Chain B, Structure Of Tetraubiquitin Shows How Multiubiquitin
Chains Can Be Formed
pdb|1F9J|A Chain A, Structure Of A New Crystal Form Of Tetraubiquitin
pdb|1F9J|B Chain B, Structure Of A New Crystal Form Of Tetraubiquitin
pdb|1P3Q|U Chain U, Mechanism Of Ubiquitin Recognition By The Cue Domain Of
Vps9
pdb|1P3Q|V Chain V, Mechanism Of Ubiquitin Recognition By The Cue Domain Of
Vps9
pdb|1UZX|B Chain B, A Complex Of The Vps23 Uev With Ubiquitin
pdb|1YD8|U Chain U, Complex Of Human Gga3 Gat Domain And Ubiquitin
pdb|1YD8|V Chain V, Complex Of Human Gga3 Gat Domain And Ubiquitin
pdb|1WR6|E Chain E, Crystal Structure Of Gga3 Gat Domain In Complex With
Ubiquitin
pdb|1WR6|F Chain F, Crystal Structure Of Gga3 Gat Domain In Complex With
Ubiquitin
pdb|1WR6|G Chain G, Crystal Structure Of Gga3 Gat Domain In Complex With
Ubiquitin
pdb|1WR6|H Chain H, Crystal Structure Of Gga3 Gat Domain In Complex With
Ubiquitin
pdb|1WRD|B Chain B, Crystal Structure Of Tom1 Gat Domain In Complex With
Ubiquitin
pdb|2D3G|A Chain A, Double Sided Ubiquitin Binding Of Hrs-Uim
pdb|2D3G|B Chain B, Double Sided Ubiquitin Binding Of Hrs-Uim
pdb|2C7M|B Chain B, Human Rabex-5 Residues 1-74 In Complex With Ubiquitin
pdb|2C7N|B Chain B, Human Rabex-5 Residues 1-74 In Complex With Ubiquitin
pdb|2C7N|D Chain D, Human Rabex-5 Residues 1-74 In Complex With Ubiquitin
pdb|2C7N|F Chain F, Human Rabex-5 Residues 1-74 In Complex With Ubiquitin
pdb|2C7N|H Chain H, Human Rabex-5 Residues 1-74 In Complex With Ubiquitin
pdb|2C7N|J Chain J, Human Rabex-5 Residues 1-74 In Complex With Ubiquitin
pdb|2C7N|L Chain L, Human Rabex-5 Residues 1-74 In Complex With Ubiquitin
pdb|2FID|A Chain A, Crystal Structure Of A Bovine Rabex-5 Fragment Complexed
With Ubiquitin
pdb|2FIF|A Chain A, Crystal Structure Of A Bovine Rabex-5 Fragment Complexed
With Ubiquitin
pdb|2FIF|C Chain C, Crystal Structure Of A Bovine Rabex-5 Fragment Complexed
With Ubiquitin
pdb|2FIF|E Chain E, Crystal Structure Of A Bovine Rabex-5 Fragment Complexed
With Ubiquitin
pdb|2G45|B Chain B, Co-Crystal Structure Of Znf Ubp Domain From The
Deubiquitinating Enzyme Isopeptidase T (Isot) In Complex
With Ubiquitin
pdb|2G45|E Chain E, Co-Crystal Structure Of Znf Ubp Domain From The
Deubiquitinating Enzyme Isopeptidase T (Isot) In Complex
With Ubiquitin
pdb|2HD5|B Chain B, Usp2 In Complex With Ubiquitin
pdb|2GMI|C Chain C, Mms2UBC13~UBIQUITIN
pdb|2DX5|B Chain B, The Complex Structure Between The Mouse Eap45-Glue Domain
And Ubiquitin
pdb|2HTH|A Chain A, Structural Basis For Ubiquitin Recognition By The Human
Eap45ESCRT-Ii Glue Domain
pdb|2OOB|B Chain B, Crystal Structure Of The Uba Domain From Cbl-B Ubiquitin
Ligase In Complex With Ubiquitin
pdb|2O6V|A Chain A, Crystal Structure And Solution Nmr Studies Of Lys48-Linked
Tetraubiquitin At Neutral Ph
pdb|2O6V|C Chain C, Crystal Structure And Solution Nmr Studies Of Lys48-Linked
Tetraubiquitin At Neutral Ph
pdb|2O6V|E Chain E, Crystal Structure And Solution Nmr Studies Of Lys48-Linked
Tetraubiquitin At Neutral Ph
pdb|2O6V|G Chain G, Crystal Structure And Solution Nmr Studies Of Lys48-Linked
Tetraubiquitin At Neutral Ph
pdb|2PE9|A Chain A, Nmr Based Structure Of The Open Conformation Of Lys48-
Linked Di-Ubiquitin Using Experimental Global Rotational
Diffusion Tensor From Nmr Relaxation Measurements
pdb|2PE9|B Chain B, Nmr Based Structure Of The Open Conformation Of Lys48-
Linked Di-Ubiquitin Using Experimental Global Rotational
Diffusion Tensor From Nmr Relaxation Measurements
pdb|2PEA|A Chain A, Nmr Based Structure Of The Closed Conformation Of Lys48-
Linked Di-Ubiquitin Using Experimental Global Rotational
Diffusion Tensor From Nmr Relaxation Measurements
pdb|2PEA|B Chain B, Nmr Based Structure Of The Closed Conformation Of Lys48-
Linked Di-Ubiquitin Using Experimental Global Rotational
Diffusion Tensor From Nmr Relaxation Measurements
pdb|1UBI|A Chain A, Synthetic Structural And Biological Studies Of The
Ubiquitin System. Part 1
pdb|1UBQ|A Chain A, Structure Of Ubiquitin Refined At 1.8 Angstroms Resolution
pdb|2QHO|A Chain A, Crystal Structure Of The Uba Domain From Edd Ubiquitin
Ligase In Complex With Ubiquitin
pdb|2QHO|C Chain C, Crystal Structure Of The Uba Domain From Edd Ubiquitin
Ligase In Complex With Ubiquitin
pdb|2QHO|E Chain E, Crystal Structure Of The Uba Domain From Edd Ubiquitin
Ligase In Complex With Ubiquitin
pdb|2QHO|G Chain G, Crystal Structure Of The Uba Domain From Edd Ubiquitin
Ligase In Complex With Ubiquitin
pdb|1D3Z|A Chain A, Ubiquitin Nmr Structure
pdb|1FXT|B Chain B, Structure Of A Conjugating Enzyme-Ubiquitin Thiolester
Complex
pdb|1Q5W|B Chain B, Ubiquitin Recognition By Npl4 Zinc-Fingers
pdb|1V80|A Chain A, Solution Structures Of Ubiquitin At 30 Bar And 3 Kbar
pdb|1V81|A Chain A, Solution Structures Of Ubiquitin At 30 Bar And 3 Kbar
pdb|1XQQ|A Chain A, Simultaneous Determination Of Protein Structure And
Dynamics
pdb|2BGF|A Chain A, Nmr Structure Of Lys48-Linked Di-Ubiquitin Using Chemical
Shift Perturbation Data Together With Rdcs And 15n-
Relaxation Data
pdb|2BGF|B Chain B, Nmr Structure Of Lys48-Linked Di-Ubiquitin Using Chemical
Shift Perturbation Data Together With Rdcs And 15n-
Relaxation Data
pdb|2DEN|B Chain B, Solution Structure Of The Ubiquitin-Associated Domain Of
Human Bmsc-Ubp And Its Complex With Ubiquitin
pdb|2FUH|B Chain B, Solution Structure Of The Ubch5cUB NON-Covalent Complex
pdb|2NR2|A Chain A, The Mumo (Minimal Under-Restraining Minimal Over-
Restraining) Method For The Determination Of Native
States Ensembles Of Proteins
pdb|2ZCC|A Chain A, Ubiquitin Crystallized Under High Pressure
pdb|2ZCC|B Chain B, Ubiquitin Crystallized Under High Pressure
pdb|2ZCC|C Chain C, Ubiquitin Crystallized Under High Pressure
pdb|2JF5|A Chain A, Crystal Structure Of Lys63-Linked Di-Ubiquitin
pdb|2JF5|B Chain B, Crystal Structure Of Lys63-Linked Di-Ubiquitin
pdb|2JY6|A Chain A, Solution Structure Of The Complex Of Ubiquitin And
Ubiquilin 1 Uba Domain
pdb|2JZZ|A Chain A, Solid-State Nmr Structure Of Microcrystalline Ubiquitin
pdb|2Z59|B Chain B, Complex Structures Of Mouse Rpn13 (22-130aa) And Ubiquitin
pdb|2K39|A Chain A, Recognition Dynamics Up To Microseconds Revealed From Rdc
Derived Ubiquitin Ensemble In Solution
pdb|2JRI|B Chain B, Solution Structure Of The Josephin Domain Of Ataxin-3 In
Complex With Ubiquitin Molecule.
pdb|2JRI|C Chain C, Solution Structure Of The Josephin Domain Of Ataxin-3 In
Complex With Ubiquitin Molecule.
pdb|3EFU|A Chain A, X-Ray Structure Of Human Ubiquitin-Hg(Ii) Adduct
pdb|3EEC|A Chain A, X-Ray Structure Of Human Ubiquitin Cd(Ii) Adduct
pdb|3EEC|B Chain B, X-Ray Structure Of Human Ubiquitin Cd(Ii) Adduct
pdb|3EHV|A Chain A, X-Ray Structure Of Human Ubiquitin Zn(Ii) Adduct
pdb|3EHV|B Chain B, X-Ray Structure Of Human Ubiquitin Zn(Ii) Adduct
pdb|3EHV|C Chain C, X-Ray Structure Of Human Ubiquitin Zn(Ii) Adduct
pdb|2K8B|A Chain A, Solution Structure Of Plaa Family Ubiquitin Binding Domain
(Pfuc) Cis Isomer In Complex With Ubiquitin
pdb|2K8C|A Chain A, Solution Structure Of Plaa Family Ubiquitin Binding Domain
(Pfuc) Trans Isomer In Complex With Ubiquitin
pdb|3H1U|A Chain A, Structure Of Ubiquitin In Complex With Cd Ions
pdb|3H1U|B Chain B, Structure Of Ubiquitin In Complex With Cd Ions
pdb|3HM3|A Chain A, The Structure And Conformation Of Lys-63 Linked
Tetra-Ubiquitin
pdb|3HM3|B Chain B, The Structure And Conformation Of Lys-63 Linked
Tetra-Ubiquitin
pdb|3HM3|C Chain C, The Structure And Conformation Of Lys-63 Linked
Tetra-Ubiquitin
pdb|3HM3|D Chain D, The Structure And Conformation Of Lys-63 Linked
Tetra-Ubiquitin
pdb|2KDE|B Chain B, Nmr Structure Of Major S5a (196-306):k48 Linked
Diubiquitin Species
pdb|2KDE|C Chain C, Nmr Structure Of Major S5a (196-306):k48 Linked
Diubiquitin Species
pdb|2KDF|B Chain B, Nmr Structure Of Minor S5a (196-306):k48 Linked
Diubiquitin Species
pdb|2KDF|C Chain C, Nmr Structure Of Minor S5a (196-306):k48 Linked
Diubiquitin Species
pdb|3H7P|B Chain B, Crystal Structure Of K63-Linked Di-Ubiquitin
pdb|2KLG|A Chain A, Pere Nmr Structure Of Ubiquitin
pdb|2KN5|A Chain A, A Correspondence Between Solution-State Dynamics Of An
Individual Protein And The Sequence And Conformational
Diversity Of Its Family
pdb|2WWZ|A Chain A, Tab2 Nzf Domain In Complex With Lys63-Linked Di-Ubiquitin,
P212121
pdb|2WWZ|B Chain B, Tab2 Nzf Domain In Complex With Lys63-Linked Di-Ubiquitin,
P212121
pdb|2WX0|A Chain A, Tab2 Nzf Domain In Complex With Lys63-Linked Di-Ubiquitin,
P21
pdb|2WX0|B Chain B, Tab2 Nzf Domain In Complex With Lys63-Linked Di-Ubiquitin,
P21
pdb|2WX0|E Chain E, Tab2 Nzf Domain In Complex With Lys63-Linked Di-Ubiquitin,
P21
pdb|2WX0|F Chain F, Tab2 Nzf Domain In Complex With Lys63-Linked Di-Ubiquitin,
P21
pdb|2WX1|A Chain A, Tab2 Nzf Domain In Complex With Lys63-Linked
Tri-Ubiquitin, P212121
pdb|2WX1|B Chain B, Tab2 Nzf Domain In Complex With Lys63-Linked
Tri-Ubiquitin, P212121
pdb|3A33|B Chain B, Ubch5b~ubiquitin Conjugate
pdb|3M3J|A Chain A, A New Crystal Form Of Lys48-Linked Diubiquitin
pdb|3M3J|B Chain B, A New Crystal Form Of Lys48-Linked Diubiquitin
pdb|3M3J|C Chain C, A New Crystal Form Of Lys48-Linked Diubiquitin
pdb|3M3J|D Chain D, A New Crystal Form Of Lys48-Linked Diubiquitin
pdb|3M3J|E Chain E, A New Crystal Form Of Lys48-Linked Diubiquitin
pdb|3M3J|F Chain F, A New Crystal Form Of Lys48-Linked Diubiquitin
pdb|3NHE|B Chain B, High Resolution Structure (1.26a) Of Usp2a In Complex With
Ubiquitin
pdb|2XEW|A Chain A, Crystal Structure Of K11-Linked Diubiquitin
pdb|2XEW|B Chain B, Crystal Structure Of K11-Linked Diubiquitin
pdb|2XEW|C Chain C, Crystal Structure Of K11-Linked Diubiquitin
pdb|2XEW|D Chain D, Crystal Structure Of K11-Linked Diubiquitin
pdb|2XEW|E Chain E, Crystal Structure Of K11-Linked Diubiquitin
pdb|2XEW|F Chain F, Crystal Structure Of K11-Linked Diubiquitin
pdb|2XEW|G Chain G, Crystal Structure Of K11-Linked Diubiquitin
pdb|2XEW|H Chain H, Crystal Structure Of K11-Linked Diubiquitin
pdb|2XEW|I Chain I, Crystal Structure Of K11-Linked Diubiquitin
pdb|2XEW|J Chain J, Crystal Structure Of K11-Linked Diubiquitin
pdb|2XEW|K Chain K, Crystal Structure Of K11-Linked Diubiquitin
pdb|2XEW|L Chain L, Crystal Structure Of K11-Linked Diubiquitin
pdb|2XK5|A Chain A, Crystal Structure Of K6-Linked Diubiquitin
pdb|3ALB|A Chain A, Cyclic Lys48-Linked Tetraubiquitin
pdb|3ALB|B Chain B, Cyclic Lys48-Linked Tetraubiquitin
pdb|3ALB|C Chain C, Cyclic Lys48-Linked Tetraubiquitin
pdb|3ALB|D Chain D, Cyclic Lys48-Linked Tetraubiquitin
pdb|3OFI|C Chain C, Crystal Structure Of Human Insulin-Degrading Enzyme In
Complex With Ubiquitin
pdb|3OFI|D Chain D, Crystal Structure Of Human Insulin-Degrading Enzyme In
Complex With Ubiquitin
pdb|2KWU|B Chain B, Solution Structure Of Ubm2 Of Murine Polymerase Iota In
Complex With Ubiquitin
pdb|2KWV|B Chain B, Solution Structure Of Ubm1 Of Murine Polymerase Iota In
Complex With Ubiquitin
pdb|2KTF|A Chain A, Solution Nmr Structure Of Human Polymerase Iota Ubm2 In
Complex With Ubiquitin
pdb|2L0F|A Chain A, Solution Nmr Structure Of Human Polymerase Iota Ubm2
(P692a Mutant) In Complex With Ubiquitin
pdb|2L0T|A Chain A, Solution Structure Of The Complex Of Ubiquitin And The Vhs
Domain Of Stam2
pdb|3N30|A Chain A, Crystal Structure Of Cubic Zn3-Hub (Human Ubiquitin)
Adduct
pdb|3N30|B Chain B, Crystal Structure Of Cubic Zn3-Hub (Human Ubiquitin)
Adduct
pdb|3N32|A Chain A, The Crystal Structure Of Human Ubiquitin Adduct With
Zeise's Salt
pdb|2L3Z|A Chain A, Proton-Detected 4d Dream Solid-State Nmr Structure Of
Ubiquitin
pdb|3PHD|E Chain E, Crystal Structure Of Human Hdac6 In Complex With Ubiquitin
pdb|3PHD|F Chain F, Crystal Structure Of Human Hdac6 In Complex With Ubiquitin
pdb|3PHD|G Chain G, Crystal Structure Of Human Hdac6 In Complex With Ubiquitin
pdb|3PHD|H Chain H, Crystal Structure Of Human Hdac6 In Complex With Ubiquitin
pdb|2XBB|C Chain C, Nedd4 Hect:ub Complex
pdb|2XBB|D Chain D, Nedd4 Hect:ub Complex
pdb|2KOX|A Chain A, Nmr Residual Dipolar Couplings Identify Long Range
Correlated Motions In The Backbone Of The Protein
Ubiquitin
pdb|2RR9|A Chain A, The Solution Structure Of The K63-Ub2:tuims Complex
pdb|2RR9|B Chain B, The Solution Structure Of The K63-Ub2:tuims Complex
pdb|3NS8|A Chain A, Crystal Structure Of An Open Conformation Of Lys48-Linked
Diubiquitin At Ph 7.5
pdb|3NS8|B Chain B, Crystal Structure Of An Open Conformation Of Lys48-Linked
Diubiquitin At Ph 7.5
pdb|3AUL|A Chain A, Crystal Structure Of Wild-Type Lys48-Linked Diubiquitin In
An Open Conformation
pdb|3AUL|B Chain B, Crystal Structure Of Wild-Type Lys48-Linked Diubiquitin In
An Open Conformation
pdb|4DDG|I Chain I, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDG|E Chain E, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDG|F Chain F, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDG|O Chain O, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDG|P Chain P, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDI|G Chain G, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDI|H Chain H, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDI|I Chain I, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|3UGB|B Chain B, Ubch5c~ubiquitin Conjugate
pdb|3TBL|D Chain D, Structure Of Mono-Ubiquitinated Pcna: Implications For Dna
Polymerase Switching And Okazaki Fragment Maturation
pdb|3TBL|E Chain E, Structure Of Mono-Ubiquitinated Pcna: Implications For Dna
Polymerase Switching And Okazaki Fragment Maturation
pdb|4DDG|D Chain D, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDG|G Chain G, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDG|H Chain H, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDG|M Chain M, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDG|N Chain N, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDG|Q Chain Q, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDG|R Chain R, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDI|D Chain D, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDI|E Chain E, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDI|F Chain F, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|2LJ5|A Chain A, Description Of The Structural Fluctuations Of Proteins
From Structure- Based Calculations Of Residual Dipolar
Couplings
pdb|3VHT|C Chain C, Crystal Structure Of Gfp-Wrnip1 Ubz Domain Fusion Protein
In Complex With Ubiquitin
pdb|2LVO|A Chain A, Structure Of The Gp78cue Domain Bound To Monubiquitin
pdb|2LVP|A Chain A, Gp78cue Domain Bound To The Distal Ubiquitin Of K48-Linked
Diubiquitin
pdb|2LVP|B Chain B, Gp78cue Domain Bound To The Distal Ubiquitin Of K48-Linked
Diubiquitin
pdb|2LVQ|A Chain A, Gp78cue Domain Bound To The Proximal Ubiquitin Of
K48-Linked Diubiquitin
pdb|2LVQ|B Chain B, Gp78cue Domain Bound To The Proximal Ubiquitin Of
K48-Linked Diubiquitin
pdb|3VUW|A Chain A, Crystal Structure Of A20 Zf7 In Complex With Linear
Ubiquitin, Form I
pdb|3VUW|B Chain B, Crystal Structure Of A20 Zf7 In Complex With Linear
Ubiquitin, Form I
pdb|3VUW|C Chain C, Crystal Structure Of A20 Zf7 In Complex With Linear
Ubiquitin, Form I
pdb|3VUX|A Chain A, Crystal Structure Of A20 Zf7 In Complex With Linear
Ubiquitin, Form Ii
pdb|3VUX|B Chain B, Crystal Structure Of A20 Zf7 In Complex With Linear
Ubiquitin, Form Ii
pdb|3VUX|C Chain C, Crystal Structure Of A20 Zf7 In Complex With Linear
Ubiquitin, Form Ii
pdb|3VUY|A Chain A, Crystal Structure Of A20 Zf7 In Complex With Linear
Tetraubiquitin
pdb|3VUY|C Chain C, Crystal Structure Of A20 Zf7 In Complex With Linear
Tetraubiquitin
pdb|3VUY|B Chain B, Crystal Structure Of A20 Zf7 In Complex With Linear
Tetraubiquitin
Length = 76
Score = 55.1 bits (131), Expect = 2e-07, Method: Composition-based stats.
Identities = 26/70 (37%), Positives = 46/70 (65%)
Query: 605 LMINIKSNTGNTVCVNLDPASDIRNVKEMIAPKLGLKYEEVKIIFAGKELEDTTIISECD 664
+ I +K+ TG T+ + ++P+ I NVK I K G+ ++ ++IFAGK+LED +S+ +
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 665 LGQQSILHAV 674
+ ++S LH V
Sbjct: 61 IQKESTLHLV 70
>pdb|3B08|A Chain A, Crystal Structure Of The Mouse Hoil1-L-Nzf In Complex With
Linear Di- Ubiquitin
pdb|3B08|D Chain D, Crystal Structure Of The Mouse Hoil1-L-Nzf In Complex With
Linear Di- Ubiquitin
pdb|3B08|G Chain G, Crystal Structure Of The Mouse Hoil1-L-Nzf In Complex With
Linear Di- Ubiquitin
pdb|3B08|J Chain J, Crystal Structure Of The Mouse Hoil1-L-Nzf In Complex With
Linear Di- Ubiquitin
pdb|3B0A|A Chain A, Crystal Structure Of The Mouse Hoil1-L-Nzf In Complex With
Linear Di- Ubiquitin
pdb|3B0A|D Chain D, Crystal Structure Of The Mouse Hoil1-L-Nzf In Complex With
Linear Di- Ubiquitin
Length = 152
Score = 55.1 bits (131), Expect = 2e-07, Method: Composition-based stats.
Identities = 26/70 (37%), Positives = 46/70 (65%)
Query: 605 LMINIKSNTGNTVCVNLDPASDIRNVKEMIAPKLGLKYEEVKIIFAGKELEDTTIISECD 664
+ I +K+ TG T+ + ++P+ I NVK I K G+ ++ ++IFAGK+LED +S+ +
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 665 LGQQSILHAV 674
+ ++S LH V
Sbjct: 61 IQKESTLHLV 70
Score = 55.1 bits (131), Expect = 2e-07, Method: Composition-based stats.
Identities = 26/70 (37%), Positives = 46/70 (65%)
Query: 605 LMINIKSNTGNTVCVNLDPASDIRNVKEMIAPKLGLKYEEVKIIFAGKELEDTTIISECD 664
+ I +K+ TG T+ + ++P+ I NVK I K G+ ++ ++IFAGK+LED +S+ +
Sbjct: 77 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 136
Query: 665 LGQQSILHAV 674
+ ++S LH V
Sbjct: 137 IQKESTLHLV 146
>pdb|2KHW|B Chain B, Solution Structure Of The Human Polymerase Iota Ubm2-
Ubiquitin Complex
pdb|3K9P|B Chain B, The Crystal Structure Of E2-25k And Ubiquitin Complex
pdb|3OJ3|A Chain A, Crystal Structure Of The A20 Znf4 And Ubiquitin Complex
pdb|3OJ3|B Chain B, Crystal Structure Of The A20 Znf4 And Ubiquitin Complex
pdb|3OJ3|C Chain C, Crystal Structure Of The A20 Znf4 And Ubiquitin Complex
pdb|3OJ3|D Chain D, Crystal Structure Of The A20 Znf4 And Ubiquitin Complex
pdb|3OJ3|E Chain E, Crystal Structure Of The A20 Znf4 And Ubiquitin Complex
pdb|3OJ3|F Chain F, Crystal Structure Of The A20 Znf4 And Ubiquitin Complex
pdb|3OJ3|G Chain G, Crystal Structure Of The A20 Znf4 And Ubiquitin Complex
pdb|3OJ3|H Chain H, Crystal Structure Of The A20 Znf4 And Ubiquitin Complex
pdb|3OJ4|B Chain B, Crystal Structure Of The A20 Znf4, Ubiquitin And Ubch5a
Complex
pdb|3OJ4|E Chain E, Crystal Structure Of The A20 Znf4, Ubiquitin And Ubch5a
Complex
pdb|3PTF|C Chain C, X-Ray Structure Of The Non-Covalent Complex Between Ubch5a
And Ubiquitin
pdb|3PTF|D Chain D, X-Ray Structure Of The Non-Covalent Complex Between Ubch5a
And Ubiquitin
Length = 79
Score = 55.1 bits (131), Expect = 2e-07, Method: Composition-based stats.
Identities = 26/70 (37%), Positives = 46/70 (65%)
Query: 605 LMINIKSNTGNTVCVNLDPASDIRNVKEMIAPKLGLKYEEVKIIFAGKELEDTTIISECD 664
+ I +K+ TG T+ + ++P+ I NVK I K G+ ++ ++IFAGK+LED +S+ +
Sbjct: 4 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 63
Query: 665 LGQQSILHAV 674
+ ++S LH V
Sbjct: 64 IQKESTLHLV 73
>pdb|3DVG|X Chain X, Crystal Structure Of K63-Specific Fab Apu.3a8 Bound To
K63-Linked Di- Ubiquitin
pdb|3DVN|X Chain X, Crystal Structure Of K63-specific Fab Apu2.16 Bound To
K63-linked Di- Ubiquitin
pdb|3DVN|U Chain U, Crystal Structure Of K63-specific Fab Apu2.16 Bound To
K63-linked Di- Ubiquitin
Length = 80
Score = 55.1 bits (131), Expect = 2e-07, Method: Composition-based stats.
Identities = 26/70 (37%), Positives = 46/70 (65%)
Query: 605 LMINIKSNTGNTVCVNLDPASDIRNVKEMIAPKLGLKYEEVKIIFAGKELEDTTIISECD 664
+ I +K+ TG T+ + ++P+ I NVK I K G+ ++ ++IFAGK+LED +S+ +
Sbjct: 4 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 63
Query: 665 LGQQSILHAV 674
+ ++S LH V
Sbjct: 64 IQKESTLHLV 73
>pdb|2ZNV|C Chain C, Crystal Structure Of Human Amsh-Lp Dub Domain In Complex
With Lys63-Linked Ubiquitin Dimer
pdb|2ZNV|F Chain F, Crystal Structure Of Human Amsh-Lp Dub Domain In Complex
With Lys63-Linked Ubiquitin Dimer
pdb|3A1Q|A Chain A, Crystal Structure Of The Mouse Rap80 Uims In Complex With
Lys63-Linked Di-Ubiquitin
pdb|3A1Q|D Chain D, Crystal Structure Of The Mouse Rap80 Uims In Complex With
Lys63-Linked Di-Ubiquitin
pdb|3JSV|B Chain B, Crystal Structure Of Mouse Nemo Cozi In Complex With
Lys63- Linked Di-Ubiquitin
pdb|3A9J|B Chain B, Crystal Structure Of The Mouse Tab2-Nzf In Complex With
Lys63-Linked Di-Ubiquitin
pdb|3A9K|B Chain B, Crystal Structure Of The Mouse Tab3-Nzf In Complex With
Lys63-Linked Di-Ubiquitin
Length = 77
Score = 55.1 bits (131), Expect = 2e-07, Method: Composition-based stats.
Identities = 26/70 (37%), Positives = 46/70 (65%)
Query: 605 LMINIKSNTGNTVCVNLDPASDIRNVKEMIAPKLGLKYEEVKIIFAGKELEDTTIISECD 664
+ I +K+ TG T+ + ++P+ I NVK I K G+ ++ ++IFAGK+LED +S+ +
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 665 LGQQSILHAV 674
+ ++S LH V
Sbjct: 61 IQKESTLHLV 70
>pdb|2K6D|B Chain B, Cin85 Sh3-C Domain In Complex With Ubiquitin
pdb|2KJH|B Chain B, Nmr Based Structural Model Of The Ubch8-Ubiquitin Complex
pdb|4DHJ|D Chain D, The Structure Of A Ceotub1 Ubiquitin Aldehyde Ubc13~ub
Complex
pdb|4DHJ|H Chain H, The Structure Of A Ceotub1 Ubiquitin Aldehyde Ubc13~ub
Complex
pdb|4DHZ|E Chain E, The Structure Of HCEOTUB1-Ubiquitin Aldehyde-Ubc13~ub
Length = 76
Score = 54.7 bits (130), Expect = 2e-07, Method: Composition-based stats.
Identities = 26/70 (37%), Positives = 46/70 (65%)
Query: 605 LMINIKSNTGNTVCVNLDPASDIRNVKEMIAPKLGLKYEEVKIIFAGKELEDTTIISECD 664
+ I +K+ TG T+ + ++P+ I NVK I K G+ ++ ++IFAGK+LED +S+ +
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 665 LGQQSILHAV 674
+ ++S LH V
Sbjct: 61 IQKESTLHLV 70
>pdb|1XD3|B Chain B, Crystal Structure Of Uchl3-Ubvme Complex
pdb|1XD3|D Chain D, Crystal Structure Of Uchl3-Ubvme Complex
pdb|2IBI|B Chain B, Covalent Ubiquitin-Usp2 Complex
pdb|2J7Q|B Chain B, Crystal Structure Of The Ubiquitin-Specific Protease
Encoded By Murine Cytomegalovirus Tegument Protein M48
In Complex With A Ubquitin-Based Suicide Substrate
pdb|2J7Q|D Chain D, Crystal Structure Of The Ubiquitin-Specific Protease
Encoded By Murine Cytomegalovirus Tegument Protein M48
In Complex With A Ubquitin-Based Suicide Substrate
pdb|3C0R|B Chain B, Structure Of Ovarian Tumor (Otu) Domain In Complex With
Ubiquitin
pdb|3C0R|D Chain D, Structure Of Ovarian Tumor (Otu) Domain In Complex With
Ubiquitin
pdb|3BY4|B Chain B, Structure Of Ovarian Tumor (Otu) Domain In Complex With
Ubiquitin
pdb|3I3T|B Chain B, Crystal Structure Of Covalent Ubiquitin-usp21 Complex
pdb|3I3T|D Chain D, Crystal Structure Of Covalent Ubiquitin-usp21 Complex
pdb|3I3T|F Chain F, Crystal Structure Of Covalent Ubiquitin-usp21 Complex
pdb|3I3T|H Chain H, Crystal Structure Of Covalent Ubiquitin-usp21 Complex
pdb|3IHP|C Chain C, Covalent Ubiquitin-Usp5 Complex
pdb|3IHP|D Chain D, Covalent Ubiquitin-Usp5 Complex
pdb|3IFW|B Chain B, Crystal Structure Of The S18y Variant Of Ubiquitin Carboxy
T Hydrolase L1 Bound To Ubiquitin Vinylmethylester.
pdb|3KVF|B Chain B, Crystal Structure Of The I93m Mutant Of Ubiquitin Carboxy
Te Hydrolase L1 Bound To Ubiquitin Vinylmethylester
pdb|3KW5|B Chain B, Crystal Structure Of Ubiquitin Carboxy Terminal Hydrolase
L1 Ubiquitin Vinylmethylester
pdb|3PT2|B Chain B, Structure Of A Viral Otu Domain Protease Bound To
Ubiquitin
pdb|3PRM|B Chain B, Structural Analysis Of A Viral Otu Domain Protease From
The Crimean- Congo Hemorrhagic Fever Virus In Complex
With Human Ubiquitin
pdb|3PRM|D Chain D, Structural Analysis Of A Viral Otu Domain Protease From
The Crimean- Congo Hemorrhagic Fever Virus In Complex
With Human Ubiquitin
pdb|3PRP|B Chain B, Structural Analysis Of A Viral Otu Domain Protease From
The Crimean- Congo Hemorrhagic Fever Virus In Complex
With Human Ubiquitin
pdb|3PRP|D Chain D, Structural Analysis Of A Viral Otu Domain Protease From
The Crimean- Congo Hemorrhagic Fever Virus In Complex
With Human Ubiquitin
pdb|3PHW|B Chain B, Otu Domain Of Crimean Congo Hemorrhagic Fever Virus In
Complex With Ubiquitin
pdb|3PHW|D Chain D, Otu Domain Of Crimean Congo Hemorrhagic Fever Virus In
Complex With Ubiquitin
pdb|3PHW|F Chain F, Otu Domain Of Crimean Congo Hemorrhagic Fever Virus In
Complex With Ubiquitin
pdb|3PHW|H Chain H, Otu Domain Of Crimean Congo Hemorrhagic Fever Virus In
Complex With Ubiquitin
pdb|4HXD|A Chain A, Diversity Of Ubiquitin And Isg15 Specificity Amongst
Nairoviruses Viral Ovarian Tumor Domain Proteases
pdb|4HXD|C Chain C, Diversity Of Ubiquitin And Isg15 Specificity Amongst
Nairoviruses Viral Ovarian Tumor Domain Proteases
Length = 75
Score = 54.7 bits (130), Expect = 2e-07, Method: Composition-based stats.
Identities = 26/70 (37%), Positives = 46/70 (65%)
Query: 605 LMINIKSNTGNTVCVNLDPASDIRNVKEMIAPKLGLKYEEVKIIFAGKELEDTTIISECD 664
+ I +K+ TG T+ + ++P+ I NVK I K G+ ++ ++IFAGK+LED +S+ +
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 665 LGQQSILHAV 674
+ ++S LH V
Sbjct: 61 IQKESTLHLV 70
>pdb|1CMX|B Chain B, Structural Basis For The Specificity Of Ubiquitin C-
Terminal Hydrolases
pdb|1CMX|D Chain D, Structural Basis For The Specificity Of Ubiquitin C-
Terminal Hydrolases
pdb|1NBF|C Chain C, Crystal Structure Of A Ubp-Family Deubiquitinating Enzyme
In Isolation And In Complex With Ubiquitin Aldehyde
pdb|1NBF|D Chain D, Crystal Structure Of A Ubp-Family Deubiquitinating Enzyme
In Isolation And In Complex With Ubiquitin Aldehyde
pdb|2AYO|B Chain B, Structure Of Usp14 Bound To Ubquitin Aldehyde
pdb|2WDT|B Chain B, Crystal Structure Of Plasmodium Falciparum Uchl3 In
Complex With The Suicide Inhibitor Ubvme
pdb|2WDT|D Chain D, Crystal Structure Of Plasmodium Falciparum Uchl3 In
Complex With The Suicide Inhibitor Ubvme
pdb|3MHS|D Chain D, Structure Of The Saga Ubp8SGF11SUS1SGF73 DUB MODULE BOUND
Ubiquitin Aldehyde
pdb|3O65|B Chain B, Crystal Structure Of A Josephin-Ubiquitin Complex:
Evolutionary Restraints On Ataxin-3 Deubiquitinating
Activity
pdb|3O65|D Chain D, Crystal Structure Of A Josephin-Ubiquitin Complex:
Evolutionary Restraints On Ataxin-3 Deubiquitinating
Activity
pdb|3O65|F Chain F, Crystal Structure Of A Josephin-Ubiquitin Complex:
Evolutionary Restraints On Ataxin-3 Deubiquitinating
Activity
pdb|3O65|H Chain H, Crystal Structure Of A Josephin-Ubiquitin Complex:
Evolutionary Restraints On Ataxin-3 Deubiquitinating
Activity
pdb|3TMP|B Chain B, The Catalytic Domain Of Human Deubiquitinase Duba In
Complex With Ubiquitin Aldehyde
pdb|3TMP|D Chain D, The Catalytic Domain Of Human Deubiquitinase Duba In
Complex With Ubiquitin Aldehyde
pdb|3TMP|F Chain F, The Catalytic Domain Of Human Deubiquitinase Duba In
Complex With Ubiquitin Aldehyde
pdb|3TMP|H Chain H, The Catalytic Domain Of Human Deubiquitinase Duba In
Complex With Ubiquitin Aldehyde
pdb|4DHJ|B Chain B, The Structure Of A Ceotub1 Ubiquitin Aldehyde Ubc13~ub
Complex
pdb|4DHJ|F Chain F, The Structure Of A Ceotub1 Ubiquitin Aldehyde Ubc13~ub
Complex
pdb|4DHJ|J Chain J, The Structure Of A Ceotub1 Ubiquitin Aldehyde Ubc13~ub
Complex
pdb|4DHJ|M Chain M, The Structure Of A Ceotub1 Ubiquitin Aldehyde Ubc13~ub
Complex
pdb|4DHZ|B Chain B, The Structure Of HCEOTUB1-Ubiquitin Aldehyde-Ubc13~ub
pdb|4IUM|B Chain B, Equine Arteritis Virus Papain-like Protease 2 (plp2)
Covalently Bound To Ubiquitin
pdb|3ZNH|B Chain B, Crimean Congo Hemorrhagic Fever Virus Otu Domain In
Complex With Ubiquitin-propargyl
Length = 76
Score = 54.7 bits (130), Expect = 2e-07, Method: Composition-based stats.
Identities = 26/70 (37%), Positives = 46/70 (65%)
Query: 605 LMINIKSNTGNTVCVNLDPASDIRNVKEMIAPKLGLKYEEVKIIFAGKELEDTTIISECD 664
+ I +K+ TG T+ + ++P+ I NVK I K G+ ++ ++IFAGK+LED +S+ +
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 665 LGQQSILHAV 674
+ ++S LH V
Sbjct: 61 IQKESTLHLV 70
>pdb|3NOB|A Chain A, Structure Of K11-Linked Di-Ubiquitin
pdb|3NOB|B Chain B, Structure Of K11-Linked Di-Ubiquitin
pdb|3NOB|C Chain C, Structure Of K11-Linked Di-Ubiquitin
pdb|3NOB|D Chain D, Structure Of K11-Linked Di-Ubiquitin
pdb|3NOB|E Chain E, Structure Of K11-Linked Di-Ubiquitin
pdb|3NOB|F Chain F, Structure Of K11-Linked Di-Ubiquitin
pdb|3NOB|G Chain G, Structure Of K11-Linked Di-Ubiquitin
pdb|3NOB|H Chain H, Structure Of K11-Linked Di-Ubiquitin
Length = 78
Score = 54.7 bits (130), Expect = 2e-07, Method: Composition-based stats.
Identities = 26/70 (37%), Positives = 46/70 (65%)
Query: 605 LMINIKSNTGNTVCVNLDPASDIRNVKEMIAPKLGLKYEEVKIIFAGKELEDTTIISECD 664
+ I +K+ TG T+ + ++P+ I NVK I K G+ ++ ++IFAGK+LED +S+ +
Sbjct: 3 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 62
Query: 665 LGQQSILHAV 674
+ ++S LH V
Sbjct: 63 IQKESTLHLV 72
>pdb|4HJK|A Chain A, U7ub7 Disulfide Variant
Length = 77
Score = 54.7 bits (130), Expect = 2e-07, Method: Composition-based stats.
Identities = 26/71 (36%), Positives = 45/71 (63%)
Query: 605 LMINIKSNTGNTVCVNLDPASDIRNVKEMIAPKLGLKYEEVKIIFAGKELEDTTIISECD 664
+ I +K TG T + ++P+ I NVK I K+G ++ ++IFAGK+LED +S+ +
Sbjct: 2 MQIFVKCLTGKTNTLEVEPSDTIENVKAKIQDKIGYPPDQQRLIFAGKQLEDGRTLSDYN 61
Query: 665 LGQQSILHAVK 675
+ ++S LH V+
Sbjct: 62 IQKESTLHCVR 72
>pdb|2Y5B|B Chain B, Structure Of Usp21 In Complex With Linear
Diubiquitin-Aldehyde
pdb|2Y5B|F Chain F, Structure Of Usp21 In Complex With Linear
Diubiquitin-Aldehyde
Length = 152
Score = 54.7 bits (130), Expect = 2e-07, Method: Composition-based stats.
Identities = 26/70 (37%), Positives = 46/70 (65%)
Query: 605 LMINIKSNTGNTVCVNLDPASDIRNVKEMIAPKLGLKYEEVKIIFAGKELEDTTIISECD 664
+ I +K+ TG T+ + ++P+ I NVK I K G+ ++ ++IFAGK+LED +S+ +
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 665 LGQQSILHAV 674
+ ++S LH V
Sbjct: 61 IQKESTLHLV 70
Score = 54.7 bits (130), Expect = 2e-07, Method: Composition-based stats.
Identities = 26/70 (37%), Positives = 46/70 (65%)
Query: 605 LMINIKSNTGNTVCVNLDPASDIRNVKEMIAPKLGLKYEEVKIIFAGKELEDTTIISECD 664
+ I +K+ TG T+ + ++P+ I NVK I K G+ ++ ++IFAGK+LED +S+ +
Sbjct: 77 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 136
Query: 665 LGQQSILHAV 674
+ ++S LH V
Sbjct: 137 IQKESTLHLV 146
>pdb|3RUL|A Chain A, New Strategy To Analyze Structures Of Glycopeptide-Target
Complexes
pdb|3RUL|B Chain B, New Strategy To Analyze Structures Of Glycopeptide-Target
Complexes
pdb|3RUL|C Chain C, New Strategy To Analyze Structures Of Glycopeptide-Target
Complexes
pdb|3RUL|D Chain D, New Strategy To Analyze Structures Of Glycopeptide-Target
Complexes
pdb|3VFK|A Chain A, The Structure Of Monodechloro-Teicoplanin In Complex With
Its Ligand, Using Ubiquitin As A Ligand Carrier
Length = 79
Score = 54.7 bits (130), Expect = 2e-07, Method: Composition-based stats.
Identities = 26/70 (37%), Positives = 46/70 (65%)
Query: 605 LMINIKSNTGNTVCVNLDPASDIRNVKEMIAPKLGLKYEEVKIIFAGKELEDTTIISECD 664
+ I +K+ TG T+ + ++P+ I NVK I K G+ ++ ++IFAGK+LED +S+ +
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 665 LGQQSILHAV 674
+ ++S LH V
Sbjct: 61 IQKESTLHLV 70
>pdb|3B1L|X Chain X, Crystal Structure Of Parkin Ubiquitin-Like Domain R33q
Mutant
Length = 76
Score = 54.3 bits (129), Expect = 2e-07, Method: Composition-based stats.
Identities = 24/71 (33%), Positives = 46/71 (64%)
Query: 605 LMINIKSNTGNTVCVNLDPASDIRNVKEMIAPKLGLKYEEVKIIFAGKELEDTTIISECD 664
+++ ++ N+ V +D + I +KE++A + G+ +++++IFAGKEL + + CD
Sbjct: 1 MIVFVRFNSSYGFPVEVDSDTSILQLKEVVAKQQGVPADQLRVIFAGKELPNHLTVQNCD 60
Query: 665 LGQQSILHAVK 675
L QQSI+H V+
Sbjct: 61 LEQQSIVHIVQ 71
>pdb|1YX5|B Chain B, Solution Structure Of S5a Uim-1UBIQUITIN COMPLEX
pdb|1YX6|B Chain B, Solution Structure Of S5a Uim-2UBIQUITIN COMPLEX
Length = 98
Score = 54.3 bits (129), Expect = 3e-07, Method: Composition-based stats.
Identities = 26/70 (37%), Positives = 46/70 (65%)
Query: 605 LMINIKSNTGNTVCVNLDPASDIRNVKEMIAPKLGLKYEEVKIIFAGKELEDTTIISECD 664
+ I +K+ TG T+ + ++P+ I NVK I K G+ ++ ++IFAGK+LED +S+ +
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 665 LGQQSILHAV 674
+ ++S LH V
Sbjct: 61 IQKESTLHLV 70
>pdb|1S1Q|B Chain B, Tsg101(Uev) Domain In Complex With Ubiquitin
pdb|1S1Q|D Chain D, Tsg101(Uev) Domain In Complex With Ubiquitin
pdb|1G6J|A Chain A, Structure Of Recombinant Human Ubiquitin In Aot Reverse
Micelles
Length = 76
Score = 54.3 bits (129), Expect = 3e-07, Method: Composition-based stats.
Identities = 26/68 (38%), Positives = 45/68 (66%)
Query: 607 INIKSNTGNTVCVNLDPASDIRNVKEMIAPKLGLKYEEVKIIFAGKELEDTTIISECDLG 666
I +K+ TG T+ + ++P+ I NVK I K G+ ++ ++IFAGK+LED +S+ ++
Sbjct: 3 IFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQ 62
Query: 667 QQSILHAV 674
++S LH V
Sbjct: 63 KESTLHLV 70
>pdb|2O6V|D Chain D, Crystal Structure And Solution Nmr Studies Of Lys48-Linked
Tetraubiquitin At Neutral Ph
pdb|2O6V|H Chain H, Crystal Structure And Solution Nmr Studies Of Lys48-Linked
Tetraubiquitin At Neutral Ph
Length = 76
Score = 54.3 bits (129), Expect = 3e-07, Method: Composition-based stats.
Identities = 25/70 (35%), Positives = 46/70 (65%)
Query: 605 LMINIKSNTGNTVCVNLDPASDIRNVKEMIAPKLGLKYEEVKIIFAGKELEDTTIISECD 664
+ I +K+ TG T+ + ++P+ I NVK I K G+ ++ ++IFAG++LED +S+ +
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGRQLEDGRTLSDYN 60
Query: 665 LGQQSILHAV 674
+ ++S LH V
Sbjct: 61 IQRESTLHLV 70
>pdb|1ZGU|B Chain B, Solution Structure Of The Human Mms2-Ubiquitin Complex
Length = 76
Score = 54.3 bits (129), Expect = 3e-07, Method: Composition-based stats.
Identities = 25/70 (35%), Positives = 46/70 (65%)
Query: 605 LMINIKSNTGNTVCVNLDPASDIRNVKEMIAPKLGLKYEEVKIIFAGKELEDTTIISECD 664
+ I +K+ TG T+ + ++P+ I NVK I K G+ ++ ++IFAG++LED +S+ +
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGRQLEDGRTLSDYN 60
Query: 665 LGQQSILHAV 674
+ ++S LH V
Sbjct: 61 IQKESTLHLV 70
>pdb|3LDZ|F Chain F, Crystal Structure Of Human Stam1 Vhs Domain In Complex
With Ubiquitin
pdb|3LDZ|E Chain E, Crystal Structure Of Human Stam1 Vhs Domain In Complex
With Ubiquitin
pdb|3LDZ|G Chain G, Crystal Structure Of Human Stam1 Vhs Domain In Complex
With Ubiquitin
Length = 73
Score = 54.3 bits (129), Expect = 3e-07, Method: Composition-based stats.
Identities = 26/70 (37%), Positives = 46/70 (65%)
Query: 605 LMINIKSNTGNTVCVNLDPASDIRNVKEMIAPKLGLKYEEVKIIFAGKELEDTTIISECD 664
+ I +K+ TG T+ + ++P+ I NVK I K G+ ++ ++IFAGK+LED +S+ +
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 665 LGQQSILHAV 674
+ ++S LH V
Sbjct: 61 IQKESTLHLV 70
>pdb|3ONS|A Chain A, Crystal Structure Of Human Ubiquitin In A New Crystal Form
Length = 72
Score = 54.3 bits (129), Expect = 3e-07, Method: Composition-based stats.
Identities = 26/70 (37%), Positives = 46/70 (65%)
Query: 605 LMINIKSNTGNTVCVNLDPASDIRNVKEMIAPKLGLKYEEVKIIFAGKELEDTTIISECD 664
+ I +K+ TG T+ + ++P+ I NVK I K G+ ++ ++IFAGK+LED +S+ +
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 665 LGQQSILHAV 674
+ ++S LH V
Sbjct: 61 IQKESTLHLV 70
>pdb|1C3T|A Chain A, Rotamer Strain As A Determinant Of Protein Structural
Specificity
Length = 76
Score = 53.9 bits (128), Expect = 3e-07, Method: Composition-based stats.
Identities = 25/70 (35%), Positives = 46/70 (65%)
Query: 605 LMINIKSNTGNTVCVNLDPASDIRNVKEMIAPKLGLKYEEVKIIFAGKELEDTTIISECD 664
+ + +K+ TG T+ V L+P+ + N+K I K G+ ++ ++IFAGK+LED +S+ +
Sbjct: 1 MQLFVKTLTGKTLTVELEPSDTVENLKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 665 LGQQSILHAV 674
L ++S +H V
Sbjct: 61 LQKESTIHLV 70
>pdb|3V6C|B Chain B, Crystal Structure Of Usp2 In Complex With Mutated
Ubiquitin
Length = 91
Score = 53.5 bits (127), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 46/74 (62%)
Query: 601 PDNTLMINIKSNTGNTVCVNLDPASDIRNVKEMIAPKLGLKYEEVKIIFAGKELEDTTII 660
P ++ I + + TG + + ++P+ I NVK I K G+ ++ ++IFAGK+LED +
Sbjct: 14 PRGSMQIFVNTLTGTHITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL 73
Query: 661 SECDLGQQSILHAV 674
S+ ++ ++S LH V
Sbjct: 74 SDYNIQKESTLHLV 87
>pdb|3OLM|D Chain D, Structure And Function Of A Ubiquitin Binding Site Within
The Catalytic Domain Of A Hect Ubiquitin Ligase
Length = 79
Score = 53.5 bits (127), Expect = 5e-07, Method: Composition-based stats.
Identities = 26/72 (36%), Positives = 46/72 (63%)
Query: 603 NTLMINIKSNTGNTVCVNLDPASDIRNVKEMIAPKLGLKYEEVKIIFAGKELEDTTIISE 662
N + I +K+ TG T+ + ++ + I NVK I K G+ ++ ++IFAGK+LED +S+
Sbjct: 2 NAMQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSD 61
Query: 663 CDLGQQSILHAV 674
++ ++S LH V
Sbjct: 62 YNIQKESTLHLV 73
>pdb|4HK2|A Chain A, U7ub25.2540
pdb|4HK2|B Chain B, U7ub25.2540
pdb|4HK2|C Chain C, U7ub25.2540
pdb|4HK2|D Chain D, U7ub25.2540
Length = 78
Score = 53.1 bits (126), Expect = 6e-07, Method: Composition-based stats.
Identities = 26/72 (36%), Positives = 44/72 (61%)
Query: 604 TLMINIKSNTGNTVCVNLDPASDIRNVKEMIAPKLGLKYEEVKIIFAGKELEDTTIISEC 663
++ I +K TG T + ++P+ I NVK I KLG+ ++ +IFAGK LED +S+
Sbjct: 2 SMQIFVKFRTGKTYTLEVEPSDTIENVKAKIQDKLGIPPDQQWLIFAGKRLEDGRTLSDY 61
Query: 664 DLGQQSILHAVK 675
++ ++S L V+
Sbjct: 62 NIQKESTLRGVR 73
>pdb|2O6V|B Chain B, Crystal Structure And Solution Nmr Studies Of Lys48-Linked
Tetraubiquitin At Neutral Ph
pdb|2O6V|F Chain F, Crystal Structure And Solution Nmr Studies Of Lys48-Linked
Tetraubiquitin At Neutral Ph
Length = 76
Score = 53.1 bits (126), Expect = 6e-07, Method: Composition-based stats.
Identities = 25/70 (35%), Positives = 45/70 (64%)
Query: 605 LMINIKSNTGNTVCVNLDPASDIRNVKEMIAPKLGLKYEEVKIIFAGKELEDTTIISECD 664
+ I +K+ TG T+ + ++P+ I NVK I K G+ ++ ++IFAG +LED +S+ +
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGXQLEDGRTLSDYN 60
Query: 665 LGQQSILHAV 674
+ ++S LH V
Sbjct: 61 IQRESTLHLV 70
>pdb|2JVC|A Chain A, Nmr Solution Structure Of Ubiquitin Like Protein
Length = 82
Score = 52.8 bits (125), Expect = 7e-07, Method: Composition-based stats.
Identities = 25/74 (33%), Positives = 47/74 (63%)
Query: 601 PDNTLMINIKSNTGNTVCVNLDPASDIRNVKEMIAPKLGLKYEEVKIIFAGKELEDTTII 660
P ++ I +K+ TG T+ +++D A + VK I K G+ ++ ++IF GK+LED+ +
Sbjct: 2 PLGSMQIFVKTLTGKTITIDVDHADTVGAVKAKIYDKEGIPPDQQRLIFGGKQLEDSNAM 61
Query: 661 SECDLGQQSILHAV 674
S+ ++ ++S LH V
Sbjct: 62 SDYNVQKESTLHLV 75
>pdb|1YJ1|A Chain A, X-Ray Crystal Structure Of A Chemically Synthesized
[d-Gln35]ubiquitin
pdb|1YJ1|B Chain B, X-Ray Crystal Structure Of A Chemically Synthesized
[d-Gln35]ubiquitin
pdb|1YJ1|C Chain C, X-Ray Crystal Structure Of A Chemically Synthesized
[d-Gln35]ubiquitin
pdb|2FCM|A Chain A, X-Ray Crystal Structure Of A Chemically Synthesized
[d-Gln35]ubiquitin With A Cubic Space Group
pdb|2FCM|B Chain B, X-Ray Crystal Structure Of A Chemically Synthesized
[d-Gln35]ubiquitin With A Cubic Space Group
pdb|2FCN|A Chain A, X-Ray Crystal Structure Of A Chemically Synthesized
[d-Val35]ubiquitin With A Cubic Space Group
pdb|2FCN|B Chain B, X-Ray Crystal Structure Of A Chemically Synthesized
[d-Val35]ubiquitin With A Cubic Space Group
Length = 76
Score = 52.4 bits (124), Expect = 9e-07, Method: Composition-based stats.
Identities = 26/70 (37%), Positives = 45/70 (64%)
Query: 605 LMINIKSNTGNTVCVNLDPASDIRNVKEMIAPKLGLKYEEVKIIFAGKELEDTTIISECD 664
L I +K+ TG T+ + ++P+ I NVK I K + ++ ++IFAGK+LED +S+ +
Sbjct: 1 LQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEXIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 665 LGQQSILHAV 674
+ ++S LH V
Sbjct: 61 IQKESTLHLV 70
>pdb|2FCS|A Chain A, X-Ray Crystal Structure Of A Chemically Synthesized
[l-Gln35]ubiquitin With A Cubic Space Group
pdb|2FCS|B Chain B, X-Ray Crystal Structure Of A Chemically Synthesized
[l-Gln35]ubiquitin With A Cubic Space Group
Length = 76
Score = 52.4 bits (124), Expect = 9e-07, Method: Composition-based stats.
Identities = 26/70 (37%), Positives = 45/70 (64%)
Query: 605 LMINIKSNTGNTVCVNLDPASDIRNVKEMIAPKLGLKYEEVKIIFAGKELEDTTIISECD 664
L I +K+ TG T+ + ++P+ I NVK I K + ++ ++IFAGK+LED +S+ +
Sbjct: 1 LQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEQIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 665 LGQQSILHAV 674
+ ++S LH V
Sbjct: 61 IQKESTLHLV 70
>pdb|4A18|K Chain K, T.Thermophila 60s Ribosomal Subunit In Complex With
Initiation Factor 6. This File Contains 26s Rrna And
Proteins Of Molecule 1
pdb|4A1B|K Chain K, T.Thermophila 60s Ribosomal Subunit In Complex With
Initiation Factor 6. This File Contains 26s Rrna And
Proteins Of Molecule 3.
pdb|4A1D|K Chain K, T.Thermophila 60s Ribosomal Subunit In Complex With
Initiation Factor 6. This File Contains 26s Rrna And
Proteins Of Molecule 4.
pdb|4A19|K Chain K, T.Thermophila 60s Ribosomal Subunit In Complex With
Initiation Factor 6. This File Contains 26s Rrna And
Proteins Of Molecule 2.
pdb|4ADX|5 Chain 5, The Cryo-Em Structure Of The Archaeal 50s Ribosomal
Subunit In Complex With Initiation Factor 6
Length = 129
Score = 52.4 bits (124), Expect = 1e-06, Method: Composition-based stats.
Identities = 25/70 (35%), Positives = 46/70 (65%)
Query: 605 LMINIKSNTGNTVCVNLDPASDIRNVKEMIAPKLGLKYEEVKIIFAGKELEDTTIISECD 664
+ I +K+ TG T+ ++++ + I NVK I K G+ ++ ++IFAGK+LED +S+ +
Sbjct: 1 MQIFVKTLTGKTITLDVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 665 LGQQSILHAV 674
+ ++S LH V
Sbjct: 61 IQKESTLHLV 70
>pdb|4HCN|B Chain B, Crystal Structure Of Burkholderia Pseudomallei Effector
Protein Chbp In Complex With Ubiquitin
Length = 98
Score = 52.4 bits (124), Expect = 1e-06, Method: Composition-based stats.
Identities = 25/70 (35%), Positives = 45/70 (64%)
Query: 605 LMINIKSNTGNTVCVNLDPASDIRNVKEMIAPKLGLKYEEVKIIFAGKELEDTTIISECD 664
+ I +K+ TG T+ + ++ + I NVK I K G+ ++ ++IFAGK+LED +S+ +
Sbjct: 23 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 82
Query: 665 LGQQSILHAV 674
+ ++S LH V
Sbjct: 83 IQKESTLHLV 92
>pdb|3V6E|B Chain B, Crystal Structure Of Usp2 And A Mutant Form Of Ubiquitin
Length = 91
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 46/74 (62%)
Query: 601 PDNTLMINIKSNTGNTVCVNLDPASDIRNVKEMIAPKLGLKYEEVKIIFAGKELEDTTII 660
P ++ I + + +G + + ++P+ I NVK I K G+ ++ ++IFAGK+LED +
Sbjct: 14 PRGSMQIFVNTLSGKHITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL 73
Query: 661 SECDLGQQSILHAV 674
S+ ++ ++S LH V
Sbjct: 74 SDYNIQKESTLHLV 87
>pdb|2JWZ|A Chain A, Mutations In The Hydrophobic Core Of Ubiquitin
Differentially Affect Its Recognition By Receptor
Proteins
Length = 76
Score = 52.0 bits (123), Expect = 1e-06, Method: Composition-based stats.
Identities = 25/70 (35%), Positives = 46/70 (65%)
Query: 605 LMINIKSNTGNTVCVNLDPASDIRNVKEMIAPKLGLKYEEVKIIFAGKELEDTTIISECD 664
+ I +K+ TG T+ + ++ + I NVK I K G+ ++ ++IFAGK+LED +S+ +
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 665 LGQQSILHAV 674
+ ++S LH+V
Sbjct: 61 IQKESTLHSV 70
>pdb|1UD7|A Chain A, Solution Structure Of The Designed Hydrophobic Core Mutant
Of Ubiquitin, 1d7
Length = 76
Score = 52.0 bits (123), Expect = 1e-06, Method: Composition-based stats.
Identities = 23/70 (32%), Positives = 45/70 (64%)
Query: 605 LMINIKSNTGNTVCVNLDPASDIRNVKEMIAPKLGLKYEEVKIIFAGKELEDTTIISECD 664
+ + +K+ TG TV + ++P+ + N K I K G+ ++ ++IFAGK+LED +S+ +
Sbjct: 1 MQVFLKTLTGKTVTIEVEPSDTVENFKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 665 LGQQSILHAV 674
+ ++S +H V
Sbjct: 61 IQKESTIHLV 70
>pdb|3L0W|B Chain B, Structure Of Split Monoubiquitinated Pcna With Ubiquitin
In Position Two
pdb|3L10|B Chain B, Structure Of Split Monoubiquitinated Pcna With Ubiquitin
In Position One
Length = 169
Score = 52.0 bits (123), Expect = 1e-06, Method: Composition-based stats.
Identities = 25/70 (35%), Positives = 45/70 (64%)
Query: 605 LMINIKSNTGNTVCVNLDPASDIRNVKEMIAPKLGLKYEEVKIIFAGKELEDTTIISECD 664
+ I +K+ TG T+ + ++ + I NVK I K G+ ++ ++IFAGK+LED +S+ +
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 665 LGQQSILHAV 674
+ ++S LH V
Sbjct: 61 IQKESTLHLV 70
>pdb|4II3|B Chain B, Crystal Structure Of S. Pombe Ubiquitin Activating Enzyme
1 (uba1) In Complex With Ubiquitin And Atp/mg
pdb|4II3|D Chain D, Crystal Structure Of S. Pombe Ubiquitin Activating Enzyme
1 (uba1) In Complex With Ubiquitin And Atp/mg
Length = 96
Score = 51.6 bits (122), Expect = 2e-06, Method: Composition-based stats.
Identities = 25/70 (35%), Positives = 45/70 (64%)
Query: 605 LMINIKSNTGNTVCVNLDPASDIRNVKEMIAPKLGLKYEEVKIIFAGKELEDTTIISECD 664
+ I +K+ TG T+ + ++ + I NVK I K G+ ++ ++IFAGK+LED +S+ +
Sbjct: 21 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 80
Query: 665 LGQQSILHAV 674
+ ++S LH V
Sbjct: 81 IQKESTLHLV 90
>pdb|1OTR|B Chain B, Solution Structure Of A Cue-Ubiquitin Complex
pdb|1Q0W|B Chain B, Solution Structure Of Vps27 Amino-Terminal Uim-Ubiquitin
Complex
pdb|1WR1|A Chain A, The Complex Sturcture Of Dsk2p Uba With Ubiquitin
pdb|2G3Q|B Chain B, Solution Structure Of Ede1 Uba-Ubiquitin Complex
pdb|2JT4|B Chain B, Solution Structure Of The Sla1 Sh3-3-Ubiquitin Complex
pdb|3CMM|B Chain B, Crystal Structure Of The Uba1-Ubiquitin Complex
pdb|3CMM|D Chain D, Crystal Structure Of The Uba1-Ubiquitin Complex
pdb|2L00|B Chain B, Solution Structure Of The Non-Covalent Complex Of The
Znf216 A20 Domain With Ubiquitin
Length = 76
Score = 51.2 bits (121), Expect = 2e-06, Method: Composition-based stats.
Identities = 25/70 (35%), Positives = 45/70 (64%)
Query: 605 LMINIKSNTGNTVCVNLDPASDIRNVKEMIAPKLGLKYEEVKIIFAGKELEDTTIISECD 664
+ I +K+ TG T+ + ++ + I NVK I K G+ ++ ++IFAGK+LED +S+ +
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 665 LGQQSILHAV 674
+ ++S LH V
Sbjct: 61 IQKESTLHLV 70
>pdb|3U5E|MM Chain m, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 60s
Subunit, Ribosome A
pdb|3U5I|MM Chain m, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 60s
Subunit, Ribosome B
pdb|4B6A|MM Chain m, Cryo-Em Structure Of The 60s Ribosomal Subunit In Complex
With Arx1 And Rei1
Length = 128
Score = 51.2 bits (121), Expect = 2e-06, Method: Composition-based stats.
Identities = 25/70 (35%), Positives = 45/70 (64%)
Query: 605 LMINIKSNTGNTVCVNLDPASDIRNVKEMIAPKLGLKYEEVKIIFAGKELEDTTIISECD 664
+ I +K+ TG T+ + ++ + I NVK I K G+ ++ ++IFAGK+LED +S+ +
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 665 LGQQSILHAV 674
+ ++S LH V
Sbjct: 61 IQKESTLHLV 70
>pdb|4GSW|A Chain A, Crystal Structure Of Ubiquitin From Entamoeba Histolytica
To 2.15 Angstrom
pdb|4GSW|B Chain B, Crystal Structure Of Ubiquitin From Entamoeba Histolytica
To 2.15 Angstrom
pdb|4GU2|A Chain A, Crystal Structure Of Ubiquitin From Entamoeba Histolytica
To 1.35 Angstrom
Length = 80
Score = 51.2 bits (121), Expect = 2e-06, Method: Composition-based stats.
Identities = 24/72 (33%), Positives = 45/72 (62%)
Query: 603 NTLMINIKSNTGNTVCVNLDPASDIRNVKEMIAPKLGLKYEEVKIIFAGKELEDTTIISE 662
N + I +K+ TG T+ + ++P I +K I K G+ ++ ++IFAGK+LE+ +S+
Sbjct: 2 NAMQIFVKTLTGKTITLEVEPNDSIDAIKAKIQEKEGIPPDQQRLIFAGKQLEEGKTLSD 61
Query: 663 CDLGQQSILHAV 674
++ ++S LH V
Sbjct: 62 YNIQKESTLHLV 73
>pdb|1OGW|A Chain A, Synthetic Ubiquitin With Fluoro-Leu At 50 And 67
Length = 76
Score = 50.8 bits (120), Expect = 3e-06, Method: Composition-based stats.
Identities = 24/70 (34%), Positives = 44/70 (62%)
Query: 605 LMINIKSNTGNTVCVNLDPASDIRNVKEMIAPKLGLKYEEVKIIFAGKELEDTTIISECD 664
+ I +K+ TG T+ + ++P+ I NVK I K G+ ++ ++IFAGK+ ED +S+ +
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQXEDGRTLSDYN 60
Query: 665 LGQQSILHAV 674
+ ++S H V
Sbjct: 61 IQKESTXHLV 70
>pdb|3U5C|FF Chain f, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome A
Length = 152
Score = 50.4 bits (119), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 45/70 (64%)
Query: 605 LMINIKSNTGNTVCVNLDPASDIRNVKEMIAPKLGLKYEEVKIIFAGKELEDTTIISECD 664
+ I +K+ TG T+ + ++ + I NVK I K G+ ++ ++IFAGK+LED +S+ +
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 665 LGQQSILHAV 674
+ ++S LH V
Sbjct: 61 IQKESTLHLV 70
>pdb|3U5G|FF Chain f, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome B
Length = 152
Score = 50.4 bits (119), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 45/70 (64%)
Query: 605 LMINIKSNTGNTVCVNLDPASDIRNVKEMIAPKLGLKYEEVKIIFAGKELEDTTIISECD 664
+ I +K+ TG T+ + ++ + I NVK I K G+ ++ ++IFAGK+LED +S+ +
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 665 LGQQSILHAV 674
+ ++S LH V
Sbjct: 61 IQKESTLHLV 70
>pdb|2GBK|A Chain A, Crystal Structure Of The 9-10 Moad Insertion Mutant Of
Ubiquitin
pdb|2GBK|B Chain B, Crystal Structure Of The 9-10 Moad Insertion Mutant Of
Ubiquitin
pdb|2GBK|C Chain C, Crystal Structure Of The 9-10 Moad Insertion Mutant Of
Ubiquitin
pdb|2GBK|D Chain D, Crystal Structure Of The 9-10 Moad Insertion Mutant Of
Ubiquitin
Length = 83
Score = 50.4 bits (119), Expect = 4e-06, Method: Composition-based stats.
Identities = 23/61 (37%), Positives = 40/61 (65%)
Query: 614 GNTVCVNLDPASDIRNVKEMIAPKLGLKYEEVKIIFAGKELEDTTIISECDLGQQSILHA 673
G T+ + ++P+ I NVK I K G+ ++ ++IFAGK+LED +S+ ++ ++S LH
Sbjct: 17 GKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHL 76
Query: 674 V 674
V
Sbjct: 77 V 77
>pdb|3H7S|A Chain A, Crystal Structures Of K63-Linked Di- And Tri-Ubiquitin
Reveal A Highly Extended Chain Architecture
pdb|3H7S|B Chain B, Crystal Structures Of K63-Linked Di- And Tri-Ubiquitin
Reveal A Highly Extended Chain Architecture
Length = 76
Score = 50.1 bits (118), Expect = 4e-06, Method: Composition-based stats.
Identities = 26/71 (36%), Positives = 46/71 (64%), Gaps = 1/71 (1%)
Query: 605 LMINIKSNTGNTVCVNLDPASDIRNVKEMIAPKLGLKYEEVKIIFAGKELEDTTIISECD 664
+ I +K+ TG T+ + ++P+ I NVK I K G+ ++ ++IFAGK+LED +S+ +
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 665 LGQ-QSILHAV 674
+ + +S LH V
Sbjct: 61 IQKRESTLHLV 71
>pdb|4I6L|B Chain B, Crystal Structure Of Otub1 In Complex With Ubiquitin
Variant
Length = 76
Score = 49.7 bits (117), Expect = 6e-06, Method: Composition-based stats.
Identities = 24/71 (33%), Positives = 46/71 (64%)
Query: 604 TLMINIKSNTGNTVCVNLDPASDIRNVKEMIAPKLGLKYEEVKIIFAGKELEDTTIISEC 663
++ I +K+ TG T+ + ++P+ I NVK I K G+ ++ K++FA K+LED +S+
Sbjct: 2 SMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQKLLFARKQLEDGRTLSDY 61
Query: 664 DLGQQSILHAV 674
++ ++S L+ V
Sbjct: 62 NIHKESFLYLV 72
>pdb|3MTN|B Chain B, Usp21 In Complex With A Ubiquitin-based, Usp21-specific
Inhibitor
pdb|3MTN|D Chain D, Usp21 In Complex With A Ubiquitin-based, Usp21-specific
Inhibitor
Length = 85
Score = 49.7 bits (117), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 43/67 (64%)
Query: 605 LMINIKSNTGNTVCVNLDPASDIRNVKEMIAPKLGLKYEEVKIIFAGKELEDTTIISECD 664
+ I +K+ TG T+ + ++P+ I NVK I K G+ ++ ++IFAGK+LED +S+ +
Sbjct: 4 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 63
Query: 665 LGQQSIL 671
+ + S L
Sbjct: 64 IQKWSTL 70
>pdb|3ZF7|SS Chain s, High-resolution Cryo-electron Microscopy Structure Of The
Trypanosoma Brucei Ribosome
Length = 128
Score = 49.7 bits (117), Expect = 7e-06, Method: Composition-based stats.
Identities = 23/70 (32%), Positives = 45/70 (64%)
Query: 605 LMINIKSNTGNTVCVNLDPASDIRNVKEMIAPKLGLKYEEVKIIFAGKELEDTTIISECD 664
+ I +K+ TG T+ + ++ + I NVK I K G+ ++ ++IFAGK+LE+ +++ +
Sbjct: 1 MQIFVKTLTGKTIALEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEEGRTLADYN 60
Query: 665 LGQQSILHAV 674
+ ++S LH V
Sbjct: 61 IQKESTLHLV 70
>pdb|2GBR|A Chain A, Crystal Structure Of The 35-36 Moad Insertion Mutant Of
Ubiquitin
pdb|2GBR|B Chain B, Crystal Structure Of The 35-36 Moad Insertion Mutant Of
Ubiquitin
pdb|2GBR|C Chain C, Crystal Structure Of The 35-36 Moad Insertion Mutant Of
Ubiquitin
Length = 81
Score = 49.7 bits (117), Expect = 7e-06, Method: Composition-based stats.
Identities = 26/75 (34%), Positives = 46/75 (61%), Gaps = 5/75 (6%)
Query: 605 LMINIKSNTGNTVCVNLDPASDIRNVKEMIAPK-----LGLKYEEVKIIFAGKELEDTTI 659
+ I +K+ TG T+ + ++P+ I NVK I K L + ++ ++IFAGK+LED
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGRWALAIPPDQQRLIFAGKQLEDGRT 60
Query: 660 ISECDLGQQSILHAV 674
+S+ ++ ++S LH V
Sbjct: 61 LSDYNIQKESTLHLV 75
>pdb|1ZW7|A Chain A, Elimination Of The C-Cap In Ubiquitin Structure, Dynamics
And Thermodynamic Consequences
Length = 82
Score = 48.1 bits (113), Expect = 2e-05, Method: Composition-based stats.
Identities = 24/70 (34%), Positives = 44/70 (62%)
Query: 605 LMINIKSNTGNTVCVNLDPASDIRNVKEMIAPKLGLKYEEVKIIFAGKELEDTTIISECD 664
+ I +K+ TG T+ + ++ + I NVK I G+ ++ ++IFAGK+LED +S+ +
Sbjct: 1 MQIFVKTLTGATITLEVESSDTIDNVKSKIQAAPGIPPDQQELIFAGKQLEDGRTLSDYN 60
Query: 665 LGQQSILHAV 674
+ ++S LH V
Sbjct: 61 IQKESTLHLV 70
>pdb|2GBJ|A Chain A, Crystal Structure Of The 9-10 8 Glycine Insertion Mutant
Of Ubiquitin.
pdb|2GBJ|B Chain B, Crystal Structure Of The 9-10 8 Glycine Insertion Mutant
Of Ubiquitin
Length = 84
Score = 47.8 bits (112), Expect = 3e-05, Method: Composition-based stats.
Identities = 22/59 (37%), Positives = 39/59 (66%)
Query: 616 TVCVNLDPASDIRNVKEMIAPKLGLKYEEVKIIFAGKELEDTTIISECDLGQQSILHAV 674
T+ + ++P+ I NVK I K G+ ++ ++IFAGK+LED +S+ ++ ++S LH V
Sbjct: 20 TITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 78
>pdb|2KDI|A Chain A, Solution Structure Of A UbiquitinUIM FUSION PROTEIN
Length = 114
Score = 47.4 bits (111), Expect = 3e-05, Method: Composition-based stats.
Identities = 23/65 (35%), Positives = 42/65 (64%)
Query: 610 KSNTGNTVCVNLDPASDIRNVKEMIAPKLGLKYEEVKIIFAGKELEDTTIISECDLGQQS 669
K+ TG T+ + ++ + I NVK I K G+ ++ ++I+AGK+LED +S+ ++ ++S
Sbjct: 15 KTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIWAGKQLEDGRTLSDYNIQRES 74
Query: 670 ILHAV 674
LH V
Sbjct: 75 TLHLV 79
>pdb|4II2|B Chain B, Crystal Structure Of Ubiquitin Activating Enzyme 1 (uba1)
In Complex With The Ub E2 Ubc4, Ubiquitin, And Atp/mg
Length = 83
Score = 47.0 bits (110), Expect = 4e-05, Method: Composition-based stats.
Identities = 20/70 (28%), Positives = 45/70 (64%)
Query: 605 LMINIKSNTGNTVCVNLDPASDIRNVKEMIAPKLGLKYEEVKIIFAGKELEDTTIISECD 664
+ I +++ TG T+ + ++ + I NV+ I + G+ ++ ++IFAG++LED +++ +
Sbjct: 8 MQIFVRTLTGRTITLEVESSDTIDNVRARIQDREGIPPDQQRLIFAGRQLEDGRTLADYN 67
Query: 665 LGQQSILHAV 674
+ ++S LH V
Sbjct: 68 IQRESTLHLV 77
>pdb|3N3K|B Chain B, The Catalytic Domain Of Usp8 In Complex With A Usp8
Specific Inhibitor
Length = 85
Score = 45.4 bits (106), Expect = 1e-04, Method: Composition-based stats.
Identities = 22/65 (33%), Positives = 40/65 (61%)
Query: 605 LMINIKSNTGNTVCVNLDPASDIRNVKEMIAPKLGLKYEEVKIIFAGKELEDTTIISECD 664
+ I +K+ G T+ + ++P+ I NVK I K G+ ++ ++IFAGK+LED +S+ +
Sbjct: 4 MRIVVKTLMGRTIILEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 63
Query: 665 LGQQS 669
+ S
Sbjct: 64 IHNHS 68
>pdb|2GBM|A Chain A, Crystal Structure Of The 35-36 8 Glycine Insertion Mutant
Of Ubiquitin
pdb|2GBM|B Chain B, Crystal Structure Of The 35-36 8 Glycine Insertion Mutant
Of Ubiquitin
pdb|2GBM|C Chain C, Crystal Structure Of The 35-36 8 Glycine Insertion Mutant
Of Ubiquitin
pdb|2GBM|D Chain D, Crystal Structure Of The 35-36 8 Glycine Insertion Mutant
Of Ubiquitin
pdb|2GBN|A Chain A, Crystal Structure Of The 35-36 8 Glycine Insertion Mutant
Of Ubiquitin
Length = 84
Score = 45.1 bits (105), Expect = 1e-04, Method: Composition-based stats.
Identities = 26/78 (33%), Positives = 46/78 (58%), Gaps = 8/78 (10%)
Query: 605 LMINIKSNTGNTVCVNLDPASDIRNVKEMIAPK--------LGLKYEEVKIIFAGKELED 656
+ I +K+ TG T+ + ++P+ I NVK I K G+ ++ ++IFAGK+LED
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGGGGGGGGGIPPDQQRLIFAGKQLED 60
Query: 657 TTIISECDLGQQSILHAV 674
+S+ ++ ++S LH V
Sbjct: 61 GRTLSDYNIQKESTLHLV 78
>pdb|3DBH|I Chain I, Structural Dissection Of A Gating Mechanism Preventing
Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1-
Uba3arg190ala-Nedd8ala72arg)
pdb|3DBH|J Chain J, Structural Dissection Of A Gating Mechanism Preventing
Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1-
Uba3arg190ala-Nedd8ala72arg)
pdb|3DBH|K Chain K, Structural Dissection Of A Gating Mechanism Preventing
Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1-
Uba3arg190ala-Nedd8ala72arg)
pdb|3DBH|L Chain L, Structural Dissection Of A Gating Mechanism Preventing
Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1-
Uba3arg190ala-Nedd8ala72arg)
pdb|3DBR|I Chain I, Structural Dissection Of A Gating Mechanism Preventing
Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1-
Uba3arg190gln-Nedd8ala72arg)
pdb|3DBR|J Chain J, Structural Dissection Of A Gating Mechanism Preventing
Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1-
Uba3arg190gln-Nedd8ala72arg)
pdb|3DBR|K Chain K, Structural Dissection Of A Gating Mechanism Preventing
Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1-
Uba3arg190gln-Nedd8ala72arg)
pdb|3DBR|L Chain L, Structural Dissection Of A Gating Mechanism Preventing
Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1-
Uba3arg190gln-Nedd8ala72arg)
Length = 88
Score = 44.7 bits (104), Expect = 2e-04, Method: Composition-based stats.
Identities = 17/71 (23%), Positives = 43/71 (60%)
Query: 604 TLMINIKSNTGNTVCVNLDPASDIRNVKEMIAPKLGLKYEEVKIIFAGKELEDTTIISEC 663
+++I +K+ TG + ++++P + +KE + K G+ ++ ++I++GK++ D ++
Sbjct: 12 SMLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADY 71
Query: 664 DLGQQSILHAV 674
+ S+LH V
Sbjct: 72 KILGGSVLHLV 82
>pdb|3DBL|I Chain I, Structural Dissection Of A Gating Mechanism Preventing
Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1-
Uba3arg190wt-Nedd8ala72gln)
pdb|3DBL|J Chain J, Structural Dissection Of A Gating Mechanism Preventing
Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1-
Uba3arg190wt-Nedd8ala72gln)
pdb|3DBL|K Chain K, Structural Dissection Of A Gating Mechanism Preventing
Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1-
Uba3arg190wt-Nedd8ala72gln)
pdb|3DBL|L Chain L, Structural Dissection Of A Gating Mechanism Preventing
Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1-
Uba3arg190wt-Nedd8ala72gln)
Length = 88
Score = 44.7 bits (104), Expect = 2e-04, Method: Composition-based stats.
Identities = 17/71 (23%), Positives = 43/71 (60%)
Query: 604 TLMINIKSNTGNTVCVNLDPASDIRNVKEMIAPKLGLKYEEVKIIFAGKELEDTTIISEC 663
+++I +K+ TG + ++++P + +KE + K G+ ++ ++I++GK++ D ++
Sbjct: 12 SMLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADY 71
Query: 664 DLGQQSILHAV 674
+ S+LH V
Sbjct: 72 KILGGSVLHLV 82
>pdb|2NVU|I Chain I, Structure Of Appbp1-Uba3~nedd8-Nedd8-Mgatp-Ubc12(C111a), A
Trapped Ubiquitin-Like Protein Activation Complex
pdb|2NVU|J Chain J, Structure Of Appbp1-Uba3~nedd8-Nedd8-Mgatp-Ubc12(C111a), A
Trapped Ubiquitin-Like Protein Activation Complex
Length = 81
Score = 44.7 bits (104), Expect = 2e-04, Method: Composition-based stats.
Identities = 17/71 (23%), Positives = 43/71 (60%)
Query: 604 TLMINIKSNTGNTVCVNLDPASDIRNVKEMIAPKLGLKYEEVKIIFAGKELEDTTIISEC 663
+++I +K+ TG + ++++P + +KE + K G+ ++ ++I++GK++ D ++
Sbjct: 5 SMLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADY 64
Query: 664 DLGQQSILHAV 674
+ S+LH V
Sbjct: 65 KILGGSVLHLV 75
>pdb|1BT0|A Chain A, Structure Of Ubiquitin-Like Protein, Rub1
Length = 76
Score = 44.3 bits (103), Expect = 3e-04, Method: Composition-based stats.
Identities = 20/70 (28%), Positives = 41/70 (58%)
Query: 605 LMINIKSNTGNTVCVNLDPASDIRNVKEMIAPKLGLKYEEVKIIFAGKELEDTTIISECD 664
++I +K+ TG + ++++P I +KE + K G+ + ++I+AGK+L D + +
Sbjct: 1 MLIKVKTLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLIYAGKQLADDKTAKDYN 60
Query: 665 LGQQSILHAV 674
+ S+LH V
Sbjct: 61 IEGGSVLHLV 70
>pdb|4F8C|B Chain B, Structure Of The Cif:nedd8 Complex - Yersinia
Pseudotuberculosis Cycle Inhibiting Factor In Complex
With Human Nedd8
pdb|4F8C|D Chain D, Structure Of The Cif:nedd8 Complex - Yersinia
Pseudotuberculosis Cycle Inhibiting Factor In Complex
With Human Nedd8
pdb|4FBJ|B Chain B, Structure Of The Cif:nedd8 Complex - Photorhabdus
Luminescens Cycle Inhibiting Factor In Complex With
Human Nedd8
Length = 88
Score = 43.9 bits (102), Expect = 3e-04, Method: Composition-based stats.
Identities = 17/70 (24%), Positives = 42/70 (60%)
Query: 605 LMINIKSNTGNTVCVNLDPASDIRNVKEMIAPKLGLKYEEVKIIFAGKELEDTTIISECD 664
++I +K+ TG + ++++P + +KE + K G+ ++ ++I++GK++ D ++
Sbjct: 1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYK 60
Query: 665 LGQQSILHAV 674
+ S+LH V
Sbjct: 61 ILGGSVLHLV 70
>pdb|2BKR|B Chain B, Nedd8 Nedp1 Complex
Length = 77
Score = 43.9 bits (102), Expect = 3e-04, Method: Composition-based stats.
Identities = 17/71 (23%), Positives = 43/71 (60%)
Query: 604 TLMINIKSNTGNTVCVNLDPASDIRNVKEMIAPKLGLKYEEVKIIFAGKELEDTTIISEC 663
+++I +K+ TG + ++++P + +KE + K G+ ++ ++I++GK++ D ++
Sbjct: 1 SMLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADY 60
Query: 664 DLGQQSILHAV 674
+ S+LH V
Sbjct: 61 KILGGSVLHLV 71
>pdb|1IB2|A Chain A, Crystal Structure Of A Pumilio-Homology Domain
pdb|1M8Z|A Chain A, Crystal Structure Of A Pumilio-Homology Domain
pdb|1M8W|A Chain A, Crystal Structure Of The Pumilio-Homology Domain From
Human Pumilio1 In Complex With Nre1-19 Rna
pdb|1M8W|B Chain B, Crystal Structure Of The Pumilio-Homology Domain From
Human Pumilio1 In Complex With Nre1-19 Rna
pdb|1M8X|A Chain A, Crystal Structure Of The Pumilio-Homology Domain From
Human Pumilio1 In Complex With Nre1-14 Rna
pdb|1M8X|B Chain B, Crystal Structure Of The Pumilio-Homology Domain From
Human Pumilio1 In Complex With Nre1-14 Rna
pdb|1M8Y|A Chain A, Crystal Structure Of The Pumilio-Homology Domain From
Human Pumilio1 In Complex With Nre2-10 Rna
pdb|1M8Y|B Chain B, Crystal Structure Of The Pumilio-Homology Domain From
Human Pumilio1 In Complex With Nre2-10 Rna
pdb|3Q0L|A Chain A, Crystal Structure Of The Pumilio-Homology Domain From
Human Pumilio1 In Complex With P38alpha Nrea
pdb|3Q0L|B Chain B, Crystal Structure Of The Pumilio-Homology Domain From
Human Pumilio1 In Complex With P38alpha Nrea
pdb|3Q0M|A Chain A, Crystal Structure Of The Pumilio-Homology Domain From
Human Pumilio1 In Complex With P38alpha Nreb
pdb|3Q0M|B Chain B, Crystal Structure Of The Pumilio-Homology Domain From
Human Pumilio1 In Complex With P38alpha Nreb
pdb|3Q0N|A Chain A, Crystal Structure Of The Pumilio-Homology Domain From
Human Pumilio1 In Complex With Erk2 Nre
pdb|3Q0N|B Chain B, Crystal Structure Of The Pumilio-Homology Domain From
Human Pumilio1 In Complex With Erk2 Nre
pdb|3Q0O|A Chain A, Crystal Structure Of The Pumilio-Homology Domain From
Human Pumilio1 In Complex With Erk2 Nre
pdb|3Q0O|B Chain B, Crystal Structure Of The Pumilio-Homology Domain From
Human Pumilio1 In Complex With Erk2 Nre
pdb|3Q0P|A Chain A, Crystal Structure Of The Pumilio-Homology Domain From
Human Pumilio1 In Complex With Hunchback Nre
pdb|3Q0P|B Chain B, Crystal Structure Of The Pumilio-Homology Domain From
Human Pumilio1 In Complex With Hunchback Nre
Length = 349
Score = 43.9 bits (102), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 44/75 (58%)
Query: 12 RIIQWLLKLSSPQMKKDIVKELLPFTVAMIKSKYSNALVKHMLKSGDENTKNEIIKALQP 71
R+IQ +L+ P I++EL T +++ +Y N +++H+L+ G K++I+ ++
Sbjct: 181 RVIQRILEHCLPDQTLPILEELHQHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIVAEIRG 240
Query: 72 HVVTLLSHTTASPVL 86
+V+ L H AS V+
Sbjct: 241 NVLVLSQHKFASNVV 255
Score = 33.5 bits (75), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 12/47 (25%), Positives = 27/47 (57%)
Query: 40 MIKSKYSNALVKHMLKSGDENTKNEIIKALQPHVVTLLSHTTASPVL 86
M+K +Y+N +V+ M+ + + ++ ++PH+ TL +T +L
Sbjct: 288 MMKDQYANYVVQKMIDVAEPGQRKIVMHKIRPHIATLRKYTYGKHIL 334
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 38/174 (21%), Positives = 73/174 (41%), Gaps = 12/174 (6%)
Query: 12 RIIQWLLKLSSPQMKKDIVKELLPFTVAMIKSKYSNALVKHMLKSGDENTKNEIIKALQP 71
R+IQ L+ + ++V+EL + +K + N +V+ ++ + II A +
Sbjct: 109 RVIQKALEFIPSDQQNEMVRELDGHVLKCVKDQNGNHVVQKCIECVQPQSLQFIIDAFKG 168
Query: 72 HVVTLLSHTTASPVLMYAHDQVASPAQKLAMRQELYGGLYESTGDKKIN-CLGDIFEQS- 129
V L +H V+ + P Q L + +EL+ + D+ N + + E
Sbjct: 169 QVFALSTHPYGCRVIQRILEHCL-PDQTLPILEELHQHTEQLVQDQYGNYVIQHVLEHGR 227
Query: 130 PEMKTAILSVTKKTIL---------KSLQKTQVTGSALLHAVLLDFISHSSDSP 174
PE K+ I++ + +L ++K S AVL+D + +D P
Sbjct: 228 PEDKSKIVAEIRGNVLVLSQHKFASNVVEKCVTHASRTERAVLIDEVCTMNDGP 281
>pdb|4HCP|B Chain B, Crystal Structure Of Burkholderia Pseudomallei Effector
Protein Chbp In Complex With Nedd8
Length = 78
Score = 43.5 bits (101), Expect = 4e-04, Method: Composition-based stats.
Identities = 17/70 (24%), Positives = 42/70 (60%)
Query: 605 LMINIKSNTGNTVCVNLDPASDIRNVKEMIAPKLGLKYEEVKIIFAGKELEDTTIISECD 664
++I +K+ TG + ++++P + +KE + K G+ ++ ++I++GK++ D ++
Sbjct: 3 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYK 62
Query: 665 LGQQSILHAV 674
+ S+LH V
Sbjct: 63 ILGGSVLHLV 72
>pdb|1NDD|B Chain B, Structure Of Nedd8
pdb|1NDD|A Chain A, Structure Of Nedd8
pdb|1NDD|C Chain C, Structure Of Nedd8
pdb|1NDD|D Chain D, Structure Of Nedd8
pdb|1R4M|I Chain I, Appbp1-Uba3-Nedd8, An E1-Ubiquitin-Like Protein Complex
pdb|1R4M|J Chain J, Appbp1-Uba3-Nedd8, An E1-Ubiquitin-Like Protein Complex
pdb|1R4M|K Chain K, Appbp1-Uba3-Nedd8, An E1-Ubiquitin-Like Protein Complex
pdb|1R4M|L Chain L, Appbp1-Uba3-Nedd8, An E1-Ubiquitin-Like Protein Complex
pdb|1R4N|I Chain I, Appbp1-Uba3-Nedd8, An E1-Ubiquitin-Like Protein Complex
With Atp
pdb|1R4N|J Chain J, Appbp1-Uba3-Nedd8, An E1-Ubiquitin-Like Protein Complex
With Atp
pdb|1R4N|K Chain K, Appbp1-Uba3-Nedd8, An E1-Ubiquitin-Like Protein Complex
With Atp
pdb|1R4N|L Chain L, Appbp1-Uba3-Nedd8, An E1-Ubiquitin-Like Protein Complex
With Atp
pdb|1XT9|B Chain B, Crystal Structure Of Den1 In Complex With Nedd8
pdb|2KO3|A Chain A, Nedd8 Solution Structure
Length = 76
Score = 43.5 bits (101), Expect = 5e-04, Method: Composition-based stats.
Identities = 17/70 (24%), Positives = 42/70 (60%)
Query: 605 LMINIKSNTGNTVCVNLDPASDIRNVKEMIAPKLGLKYEEVKIIFAGKELEDTTIISECD 664
++I +K+ TG + ++++P + +KE + K G+ ++ ++I++GK++ D ++
Sbjct: 1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYK 60
Query: 665 LGQQSILHAV 674
+ S+LH V
Sbjct: 61 ILGGSVLHLV 70
>pdb|3GZN|I Chain I, Structure Of Nedd8-Activating Enzyme In Complex With Nedd8
And Mln4924
pdb|3GZN|J Chain J, Structure Of Nedd8-Activating Enzyme In Complex With Nedd8
And Mln4924
Length = 82
Score = 43.5 bits (101), Expect = 5e-04, Method: Composition-based stats.
Identities = 17/70 (24%), Positives = 42/70 (60%)
Query: 605 LMINIKSNTGNTVCVNLDPASDIRNVKEMIAPKLGLKYEEVKIIFAGKELEDTTIISECD 664
++I +K+ TG + ++++P + +KE + K G+ ++ ++I++GK++ D ++
Sbjct: 7 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYK 66
Query: 665 LGQQSILHAV 674
+ S+LH V
Sbjct: 67 ILGGSVLHLV 76
>pdb|3BSB|A Chain A, Crystal Structure Of Human Pumilio1 In Complex With
Cyclinb Reverse Rna
pdb|3BSB|B Chain B, Crystal Structure Of Human Pumilio1 In Complex With
Cyclinb Reverse Rna
pdb|3BSX|A Chain A, Crystal Structure Of Human Pumilio 1 In Complex With Puf5
Rna
pdb|3BSX|B Chain B, Crystal Structure Of Human Pumilio 1 In Complex With Puf5
Rna
Length = 343
Score = 43.5 bits (101), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 44/75 (58%)
Query: 12 RIIQWLLKLSSPQMKKDIVKELLPFTVAMIKSKYSNALVKHMLKSGDENTKNEIIKALQP 71
R+IQ +L+ P I++EL T +++ +Y N +++H+L+ G K++I+ ++
Sbjct: 181 RVIQRILEHCLPDQTLPILEELHQHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIVAEIRG 240
Query: 72 HVVTLLSHTTASPVL 86
+V+ L H AS V+
Sbjct: 241 NVLVLSQHKFASNVV 255
Score = 33.1 bits (74), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 12/47 (25%), Positives = 27/47 (57%)
Query: 40 MIKSKYSNALVKHMLKSGDENTKNEIIKALQPHVVTLLSHTTASPVL 86
M+K +Y+N +V+ M+ + + ++ ++PH+ TL +T +L
Sbjct: 288 MMKDQYANYVVQKMIDVAEPGQRKIVMHKIRPHIATLRKYTYGKHIL 334
Score = 32.0 bits (71), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 38/174 (21%), Positives = 73/174 (41%), Gaps = 12/174 (6%)
Query: 12 RIIQWLLKLSSPQMKKDIVKELLPFTVAMIKSKYSNALVKHMLKSGDENTKNEIIKALQP 71
R+IQ L+ + ++V+EL + +K + N +V+ ++ + II A +
Sbjct: 109 RVIQKALEFIPSDQQNEMVRELDGHVLKCVKDQNGNHVVQKCIECVQPQSLQFIIDAFKG 168
Query: 72 HVVTLLSHTTASPVLMYAHDQVASPAQKLAMRQELYGGLYESTGDKKIN-CLGDIFEQS- 129
V L +H V+ + P Q L + +EL+ + D+ N + + E
Sbjct: 169 QVFALSTHPYGCRVIQRILEHCL-PDQTLPILEELHQHTEQLVQDQYGNYVIQHVLEHGR 227
Query: 130 PEMKTAILSVTKKTIL---------KSLQKTQVTGSALLHAVLLDFISHSSDSP 174
PE K+ I++ + +L ++K S AVL+D + +D P
Sbjct: 228 PEDKSKIVAEIRGNVLVLSQHKFASNVVEKCVTHASRTERAVLIDEVCTMNDGP 281
>pdb|3H3D|X Chain X, Drosophila Pumilio Rna Binding Domain (Puf Domain)
pdb|3H3D|Y Chain Y, Drosophila Pumilio Rna Binding Domain (Puf Domain)
Length = 323
Score = 43.5 bits (101), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 44/75 (58%)
Query: 12 RIIQWLLKLSSPQMKKDIVKELLPFTVAMIKSKYSNALVKHMLKSGDENTKNEIIKALQP 71
R+IQ +L+ + + I+ EL T +I+ +Y N +++H+L+ G + K+ +I +++
Sbjct: 183 RVIQRILEHCTAEQTTPILDELHEHTEQLIQDQYGNYVIQHVLEHGKQEDKSILINSVRG 242
Query: 72 HVVTLLSHTTASPVL 86
V+ L H AS V+
Sbjct: 243 KVLVLSQHKFASNVV 257
Score = 33.1 bits (74), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 38/75 (50%)
Query: 12 RIIQWLLKLSSPQMKKDIVKELLPFTVAMIKSKYSNALVKHMLKSGDENTKNEIIKALQP 71
R+IQ L+ SP+ +++IV EL + +K + N +V+ ++ D II A +
Sbjct: 111 RVIQKALESISPEQQQEIVHELDGHVLKCVKDQNGNHVVQKCIECVDPVALQFIINAFKG 170
Query: 72 HVVTLLSHTTASPVL 86
V +L +H V+
Sbjct: 171 QVYSLSTHPYGCRVI 185
>pdb|1GJZ|A Chain A, Solution Structure Of A Dimeric N-Terminal Fragment Of
Human Ubiquitin
pdb|1GJZ|B Chain B, Solution Structure Of A Dimeric N-Terminal Fragment Of
Human Ubiquitin
Length = 53
Score = 43.5 bits (101), Expect = 5e-04, Method: Composition-based stats.
Identities = 20/52 (38%), Positives = 35/52 (67%)
Query: 604 TLMINIKSNTGNTVCVNLDPASDIRNVKEMIAPKLGLKYEEVKIIFAGKELE 655
++ I +K+ TG T+ + ++P+ I NVK I K G+ ++ ++IFAGK+LE
Sbjct: 2 SMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLE 53
>pdb|3DQV|A Chain A, Structural Insights Into Nedd8 Activation Of Cullin-Ring
Ligases: Conformational Control Of Conjugation
pdb|3DQV|B Chain B, Structural Insights Into Nedd8 Activation Of Cullin-Ring
Ligases: Conformational Control Of Conjugation
Length = 81
Score = 42.7 bits (99), Expect = 7e-04, Method: Composition-based stats.
Identities = 17/69 (24%), Positives = 40/69 (57%)
Query: 606 MINIKSNTGNTVCVNLDPASDIRNVKEMIAPKLGLKYEEVKIIFAGKELEDTTIISECDL 665
+I +K+ TG + ++++P + +KE + K G+ ++ ++I++GK+ D ++ +
Sbjct: 7 LIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQXNDEKTAADYKI 66
Query: 666 GQQSILHAV 674
S+LH V
Sbjct: 67 XGGSVLHLV 75
>pdb|3GVO|A Chain A, Structure And Rna Binding Of The Mouse Pumilio-2 Puf
Domain
pdb|3GVT|A Chain A, Structure And Rna Binding Of The Mouse Pumilio-2 Puf
Domain
pdb|3GVT|B Chain B, Structure And Rna Binding Of The Mouse Pumilio-2 Puf
Domain
Length = 351
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 44/75 (58%)
Query: 12 RIIQWLLKLSSPQMKKDIVKELLPFTVAMIKSKYSNALVKHMLKSGDENTKNEIIKALQP 71
R+IQ +L+ + + I++EL T +++ +Y N +++H+L+ G K++I+ ++
Sbjct: 183 RVIQRILEHCTAEQTLPILEELHQHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIVSEIRG 242
Query: 72 HVVTLLSHTTASPVL 86
V+ L H AS V+
Sbjct: 243 KVLALSQHKFASNVV 257
Score = 33.1 bits (74), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 13/47 (27%), Positives = 27/47 (57%)
Query: 40 MIKSKYSNALVKHMLKSGDENTKNEIIKALQPHVVTLLSHTTASPVL 86
M+K +Y+N +V+ M+ + + I+ ++PH+ TL +T +L
Sbjct: 290 MMKDQYANYVVQKMIDMAEPAQRKIIMHKIRPHITTLRKYTYGKHIL 336
Score = 31.6 bits (70), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 39/174 (22%), Positives = 74/174 (42%), Gaps = 12/174 (6%)
Query: 12 RIIQWLLKLSSPQMKKDIVKELLPFTVAMIKSKYSNALVKHMLKSGDENTKNEIIKALQP 71
R+IQ L+ S + ++VKEL + +K + N +V+ ++ + II A +
Sbjct: 111 RVIQKALESISSDQQSEMVKELDGHVLKCVKDQNGNHVVQKCIECVQPQSLQFIIDAFKG 170
Query: 72 HVVTLLSHTTASPVLMYAHDQVASPAQKLAMRQELYGGLYESTGDKKIN-CLGDIFEQS- 129
V L +H V+ + + Q L + +EL+ + D+ N + + E
Sbjct: 171 QVFVLSTHPYGCRVIQRILEH-CTAEQTLPILEELHQHTEQLVQDQYGNYVIQHVLEHGR 229
Query: 130 PEMKTAILSVTKKTIL---------KSLQKTQVTGSALLHAVLLDFISHSSDSP 174
PE K+ I+S + +L ++K S A+L+D + +D P
Sbjct: 230 PEDKSKIVSEIRGKVLALSQHKFASNVVEKCVTHASRAERALLIDEVCCQNDGP 283
>pdb|3Q0Q|A Chain A, Crystal Structure Of The Pumilio-Homology Domain From
Human Pumilio2 In Complex With P38alpha Nrea
pdb|3Q0R|A Chain A, Crystal Structure Of The Pumilio-Homology Domain From
Human Pumilio2 In Complex With P38alpha Nreb
pdb|3Q0S|A Chain A, Crystal Structure Of The Pumilio-Homology Domain From
Human Pumilio2 In Complex With Erk2 Nre
Length = 351
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 44/75 (58%)
Query: 12 RIIQWLLKLSSPQMKKDIVKELLPFTVAMIKSKYSNALVKHMLKSGDENTKNEIIKALQP 71
R+IQ +L+ + + I++EL T +++ +Y N +++H+L+ G K++I+ ++
Sbjct: 183 RVIQRILEHCTAEQTLPILEELHQHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIVSEIRG 242
Query: 72 HVVTLLSHTTASPVL 86
V+ L H AS V+
Sbjct: 243 KVLALSQHKFASNVV 257
Score = 33.1 bits (74), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 13/47 (27%), Positives = 27/47 (57%)
Query: 40 MIKSKYSNALVKHMLKSGDENTKNEIIKALQPHVVTLLSHTTASPVL 86
M+K +Y+N +V+ M+ + + I+ ++PH+ TL +T +L
Sbjct: 290 MMKDQYANYVVQKMIDMAEPAQRKIIMHKIRPHITTLRKYTYGKHIL 336
>pdb|2YJY|A Chain A, A Specific And Modular Binding Code For Cytosine
Recognition In Puf Domains
pdb|2YJY|B Chain B, A Specific And Modular Binding Code For Cytosine
Recognition In Puf Domains
Length = 350
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 44/75 (58%)
Query: 12 RIIQWLLKLSSPQMKKDIVKELLPFTVAMIKSKYSNALVKHMLKSGDENTKNEIIKALQP 71
R+IQ +L+ P I++EL T +++ +Y + +++H+L+ G K++I+ ++
Sbjct: 182 RVIQRILEHCLPDQTLPILEELHQHTEQLVQDQYGSYVIRHVLEHGRPEDKSKIVAEIRG 241
Query: 72 HVVTLLSHTTASPVL 86
+V+ L H AS V+
Sbjct: 242 NVLVLSQHKFASNVV 256
Score = 33.5 bits (75), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 12/47 (25%), Positives = 27/47 (57%)
Query: 40 MIKSKYSNALVKHMLKSGDENTKNEIIKALQPHVVTLLSHTTASPVL 86
M+K +Y+N +V+ M+ + + ++ ++PH+ TL +T +L
Sbjct: 289 MMKDQYANYVVQKMIDVAEPGQRKIVMHKIRPHIATLRKYTYGKHIL 335
Score = 29.6 bits (65), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 37/174 (21%), Positives = 73/174 (41%), Gaps = 12/174 (6%)
Query: 12 RIIQWLLKLSSPQMKKDIVKELLPFTVAMIKSKYSNALVKHMLKSGDENTKNEIIKALQP 71
R+IQ L+ + ++V+EL + +K + N +V+ ++ + II A +
Sbjct: 110 RVIQKALEFIPSDQQNEMVRELDGHVLKCVKDQNGNHVVQKCIECVQPQSLQFIIDAFKG 169
Query: 72 HVVTLLSHTTASPVLMYAHDQVASPAQKLAMRQELYGGLYESTGDKKIN-CLGDIFEQS- 129
V L +H V+ + P Q L + +EL+ + D+ + + + E
Sbjct: 170 QVFALSTHPYGCRVIQRILEHCL-PDQTLPILEELHQHTEQLVQDQYGSYVIRHVLEHGR 228
Query: 130 PEMKTAILSVTKKTIL---------KSLQKTQVTGSALLHAVLLDFISHSSDSP 174
PE K+ I++ + +L ++K S AVL+D + +D P
Sbjct: 229 PEDKSKIVAEIRGNVLVLSQHKFASNVVEKCVTHASRTERAVLIDEVCTMNDGP 282
>pdb|3M62|B Chain B, Crystal Structure Of Ufd2 In Complex With The
Ubiquitin-Like (Ubl) Domain Of Rad23
Length = 106
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/79 (26%), Positives = 44/79 (55%), Gaps = 2/79 (2%)
Query: 617 VCVNLDPASDIRNVKEMIAPKLGLKYEEVKIIFAGKELEDTTIISECDL--GQQSILHAV 674
V ++L+P++ I K +A + + ++K+I++GK L+D+ +SEC L G Q +
Sbjct: 14 VPLDLEPSNTILETKTKLAQSISCEESQIKLIYSGKVLQDSKTVSECGLKDGDQVVFMVS 73
Query: 675 KSSPENNKIQKSKPMNSTL 693
+ K+ + P +S++
Sbjct: 74 QKKSTKTKVTERDPNSSSV 92
>pdb|3K49|A Chain A, Puf3 Rna Binding Domain Bound To Cox17 Rna 3' Utr
Recognition Sequence Site B
pdb|3K49|C Chain C, Puf3 Rna Binding Domain Bound To Cox17 Rna 3' Utr
Recognition Sequence Site B
pdb|3K49|E Chain E, Puf3 Rna Binding Domain Bound To Cox17 Rna 3' Utr
Recognition Sequence Site B
pdb|3K4E|A Chain A, Puf3 Rna Binding Domain Bound To Cox17 Rna 3' Utr
Recognition Sequence Site A
pdb|3K4E|C Chain C, Puf3 Rna Binding Domain Bound To Cox17 Rna 3' Utr
Recognition Sequence Site A
pdb|3K4E|E Chain E, Puf3 Rna Binding Domain Bound To Cox17 Rna 3' Utr
Recognition Sequence Site A
Length = 369
Score = 40.4 bits (93), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 46/82 (56%), Gaps = 8/82 (9%)
Query: 12 RIIQWLLKLSSPQMKKDIVKELLPFTVAMIKSKYSNALVKHMLKSGDENT-------KNE 64
R+IQ LL+ S + ++ I+ EL F +I+ +Y N +++++L+ D+ T K E
Sbjct: 188 RVIQRLLEFGSSEDQESILNELKDFIPYLIQDQYGNYVIQYVLQQ-DQFTNKEMVDIKQE 246
Query: 65 IIKALQPHVVTLLSHTTASPVL 86
II+ + +VV H AS V+
Sbjct: 247 IIETVANNVVEYSKHKFASNVV 268
>pdb|2BWE|S Chain S, The Crystal Structure Of The Complex Between The Uba And
Ubl Domains Of Dsk2
pdb|2BWE|T Chain T, The Crystal Structure Of The Complex Between The Uba And
Ubl Domains Of Dsk2
pdb|2BWE|U Chain U, The Crystal Structure Of The Complex Between The Uba And
Ubl Domains Of Dsk2
pdb|2BWF|A Chain A, Crystal Sturcture Of The Ubl Domain Of Dsk2 From S.
Cerevisiae
pdb|2BWF|B Chain B, Crystal Sturcture Of The Ubl Domain Of Dsk2 From S.
Cerevisiae
Length = 77
Score = 35.0 bits (79), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 38/77 (49%), Gaps = 1/77 (1%)
Query: 602 DNTLMINIKSNTGNTVCVNLDPASDIRNVKEMIAPKLGLKYEEVKIIFAGKELEDTTIIS 661
D +L I+IKS + VN+ P S + KE I G+ ++I++GK L+D +
Sbjct: 2 DMSLNIHIKSGQ-DKWEVNVAPESTVLQFKEAINKANGIPVANQRLIYSGKILKDDQTVE 60
Query: 662 ECDLGQQSILHAVKSSP 678
+ +H VKS P
Sbjct: 61 SYHIQDGHSVHLVKSQP 77
>pdb|3M63|B Chain B, Crystal Structure Of Ufd2 In Complex With The
Ubiquitin-Like (Ubl) Domain Of Dsk2
Length = 101
Score = 34.3 bits (77), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 37/75 (49%), Gaps = 1/75 (1%)
Query: 604 TLMINIKSNTGNTVCVNLDPASDIRNVKEMIAPKLGLKYEEVKIIFAGKELEDTTIISEC 663
+L I+IKS + VN+ P S + KE I G+ ++I++GK L+D +
Sbjct: 28 SLNIHIKSGQ-DKWEVNVAPESTVLQFKEAINKANGIPVANQRLIYSGKILKDDQTVESY 86
Query: 664 DLGQQSILHAVKSSP 678
+ +H VKS P
Sbjct: 87 HIQDGHSVHLVKSQP 101
>pdb|1UEL|A Chain A, Solution Structure Of Ubiquitin-Like Domain Of Hhr23b
Complexed With Ubiquitin-Interacting Motif Of Proteasome
Subunit S5a
Length = 95
Score = 32.0 bits (71), Expect = 1.4, Method: Composition-based stats.
Identities = 19/78 (24%), Positives = 41/78 (52%), Gaps = 3/78 (3%)
Query: 605 LMINIKSNTGNTVCVNLDPASDIRNVKEMIAPKLGLKYEEV---KIIFAGKELEDTTIIS 661
+ + +K+ T +++DP ++ +KE I + G V K+I+AGK L D T +
Sbjct: 1 MQVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALK 60
Query: 662 ECDLGQQSILHAVKSSPE 679
E + +++ + + + P+
Sbjct: 61 EYKIDEKNFVVVMVTKPK 78
>pdb|1P1A|A Chain A, Nmr Structure Of Ubiquitin-Like Domain Of Hhr23b
Length = 85
Score = 32.0 bits (71), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 19/78 (24%), Positives = 41/78 (52%), Gaps = 3/78 (3%)
Query: 605 LMINIKSNTGNTVCVNLDPASDIRNVKEMIAPKLGLKYEEV---KIIFAGKELEDTTIIS 661
+ + +K+ T +++DP ++ +KE I + G V K+I+AGK L D T +
Sbjct: 4 MQVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALK 63
Query: 662 ECDLGQQSILHAVKSSPE 679
E + +++ + + + P+
Sbjct: 64 EYKIDEKNFVVVMVTKPK 81
>pdb|3TTO|A Chain A, Crystal Structure Of Leuconostoc Mesenteroides Nrrl B-1299
N- Terminally Truncated Dextransucrase Dsr-E In
Triclinic Form
pdb|3TTO|B Chain B, Crystal Structure Of Leuconostoc Mesenteroides Nrrl B-1299
N- Terminally Truncated Dextransucrase Dsr-E In
Triclinic Form
pdb|3TTO|C Chain C, Crystal Structure Of Leuconostoc Mesenteroides Nrrl B-1299
N- Terminally Truncated Dextransucrase Dsr-E In
Triclinic Form
pdb|3TTO|D Chain D, Crystal Structure Of Leuconostoc Mesenteroides Nrrl B-1299
N- Terminally Truncated Dextransucrase Dsr-E In
Triclinic Form
pdb|3TTQ|A Chain A, Crystal Structure Of Leuconostoc Mesenteroides Nrrl B-1299
N- Terminally Truncated Dextransucrase Dsr-E In
Orthorhombic Apo-Form At 1.9 Angstrom Resolution
Length = 1108
Score = 30.4 bits (67), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 34/174 (19%), Positives = 72/174 (41%), Gaps = 20/174 (11%)
Query: 643 EEVKIIFAGKELEDTTIISECDLGQQSILHAVKSSPENNKIQKSKPMNSTLTDFHIQELD 702
+ + ++ AG + +TI ++ + +S L + N+ K+KP+ + L D L
Sbjct: 485 QHISLVEAGLDAGTSTIHNDALI--ESNLREAATLSLTNEPGKNKPLTNMLQDVDGGTLI 542
Query: 703 EESARSSSPDITQEPVTPSKAHFYLRVRCAQCKSGAVIVDRDPQSWSDVLEPRQISCHCT 762
+ ++S T+ TP+ + + + Q K GA I D W++ T
Sbjct: 543 TDHTQNS----TENQATPNYSIIHAHDKGVQEKVGAAITDATGADWTNF----------T 588
Query: 763 EEHCTTGPVSWAEFYFKCAQHVSANMNQVDECLPLSLVTSNVRKIPCLACTDVW 816
+E G E ++K + + N + +L+ +N +P + D++
Sbjct: 589 DEQLKAG----LELFYKDQRATNKKYNSYNIPSIYALMLTNKDTVPRMYYGDMY 638
>pdb|1WX8|A Chain A, Solution Structure Of The N-Terminal Ubiquitin-Like Domain
In The 4931431f19rik Protein
Length = 96
Score = 30.0 bits (66), Expect = 5.0, Method: Composition-based stats.
Identities = 17/53 (32%), Positives = 28/53 (52%)
Query: 625 SDIRNVKEMIAPKLGLKYEEVKIIFAGKELEDTTIISECDLGQQSILHAVKSS 677
S++R K+ I+ L + + +IF GK L D I+S+ + S +H V S
Sbjct: 37 SNVRRFKKQISKYLHCNADRLVLIFTGKILRDQDILSQRGILDGSTVHVVVRS 89
>pdb|2KD0|A Chain A, Nmr Solution Structure Of O64736 Protein From Arabidopsis
Thaliana. Northeast Structural Genomics Consortium Mega
Target Ar3445a
Length = 85
Score = 30.0 bits (66), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 15/63 (23%), Positives = 34/63 (53%)
Query: 614 GNTVCVNLDPASDIRNVKEMIAPKLGLKYEEVKIIFAGKELEDTTIISECDLGQQSILHA 673
G ++ +++ P ++++K + P + K+IF GK L +T+ + + D+G + L
Sbjct: 21 GKSIPLSVSPDCTVKDLKSQLQPITNVLPRGQKLIFKGKVLVETSTLKQSDVGSGAKLML 80
Query: 674 VKS 676
+ S
Sbjct: 81 MAS 83
>pdb|3MQ3|A Chain A, Crystal Structure Of Native Bovine Pdp1c
pdb|3N3C|A Chain A, Crystal Structure Of Native Bovine Pdp1c
Length = 467
Score = 29.6 bits (65), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 42/80 (52%), Gaps = 10/80 (12%)
Query: 18 LKLSSPQMK-KDIVKE------LLPF-TVAMIKSKYSNALVKHMLKSG-DENTKNEIIKA 68
LKL P+ + K +VK+ L+PF +K K+S L K +++SG D+ NE K
Sbjct: 254 LKLEHPKNEAKSVVKQDRLLGLLMPFRAFGDVKFKWSIDLQKRVIESGPDQLNDNEYTKF 313
Query: 69 LQPHVVTLLSHTTASPVLMY 88
+ P+ T + TA P + Y
Sbjct: 314 IPPNYYT-PPYLTAEPEVTY 332
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.132 0.391
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 20,905,893
Number of Sequences: 62578
Number of extensions: 794678
Number of successful extensions: 2152
Number of sequences better than 100.0: 119
Number of HSP's better than 100.0 without gapping: 112
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 2008
Number of HSP's gapped (non-prelim): 147
length of query: 816
length of database: 14,973,337
effective HSP length: 107
effective length of query: 709
effective length of database: 8,277,491
effective search space: 5868741119
effective search space used: 5868741119
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (26.2 bits)