Query psy15035
Match_columns 816
No_of_seqs 539 out of 2280
Neff 6.9
Searched_HMMs 46136
Date Fri Aug 16 18:46:13 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15035.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/15035hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2050|consensus 100.0 6E-91 1.3E-95 764.1 31.2 469 1-524 166-650 (652)
2 KOG0006|consensus 100.0 4.4E-48 9.5E-53 395.8 10.3 199 605-816 1-231 (446)
3 cd07920 Pumilio Pumilio-family 100.0 2.6E-41 5.6E-46 370.8 27.5 302 1-346 12-321 (322)
4 KOG1488|consensus 100.0 3.9E-40 8.6E-45 367.9 21.0 293 1-365 181-477 (503)
5 cd07920 Pumilio Pumilio-family 100.0 4.9E-39 1.1E-43 352.8 23.2 266 2-278 49-322 (322)
6 KOG1488|consensus 100.0 6.5E-33 1.4E-37 310.1 21.4 259 10-279 227-496 (503)
7 COG5099 RNA-binding protein of 100.0 2.7E-30 5.8E-35 304.9 22.2 294 5-367 447-741 (777)
8 KOG2049|consensus 100.0 1.9E-30 4.2E-35 292.8 16.4 276 2-353 220-498 (536)
9 PF08144 CPL: CPL (NUC119) dom 100.0 2.9E-30 6.2E-35 250.4 10.6 145 266-458 1-146 (148)
10 KOG2050|consensus 99.9 9.8E-24 2.1E-28 234.0 22.2 289 21-353 146-446 (652)
11 KOG2049|consensus 99.9 5.3E-23 1.1E-27 232.7 14.3 265 3-277 257-531 (536)
12 COG5099 RNA-binding protein of 99.9 6.1E-22 1.3E-26 234.4 18.6 259 8-277 486-756 (777)
13 KOG0896|consensus 99.8 1.9E-22 4.1E-27 185.0 2.0 79 521-600 2-80 (138)
14 cd01793 Fubi Fubi ubiquitin-li 99.7 4.2E-17 9.1E-22 140.5 8.3 73 605-679 1-74 (74)
15 KOG0004|consensus 99.7 3.6E-17 7.7E-22 155.0 6.2 78 605-682 1-79 (156)
16 cd01802 AN1_N ubiquitin-like d 99.7 1.6E-16 3.5E-21 145.3 9.6 79 601-679 24-103 (103)
17 cd01807 GDX_N ubiquitin-like d 99.7 1.4E-16 3E-21 137.3 8.2 72 605-676 1-73 (74)
18 PTZ00044 ubiquitin; Provisiona 99.7 2.1E-16 4.6E-21 136.7 8.5 75 605-679 1-76 (76)
19 cd01810 ISG15_repeat2 ISG15 ub 99.6 7.3E-16 1.6E-20 132.8 7.8 73 607-679 1-74 (74)
20 KOG2188|consensus 99.6 1.3E-14 2.9E-19 163.5 19.6 244 6-277 343-604 (650)
21 cd01797 NIRF_N amino-terminal 99.6 9.7E-16 2.1E-20 133.3 8.2 74 605-678 1-77 (78)
22 cd01803 Ubiquitin Ubiquitin. U 99.6 1.4E-15 3.1E-20 131.2 8.4 75 605-679 1-76 (76)
23 KOG0003|consensus 99.6 1E-16 2.2E-21 141.0 0.6 75 605-679 1-76 (128)
24 cd01806 Nedd8 Nebb8-like ubiq 99.6 3.3E-15 7.1E-20 129.0 9.0 75 605-679 1-76 (76)
25 cd01804 midnolin_N Ubiquitin-l 99.6 3.8E-15 8.3E-20 129.6 8.5 75 604-679 1-76 (78)
26 cd01791 Ubl5 UBL5 ubiquitin-li 99.6 3.9E-15 8.4E-20 127.7 8.0 71 604-674 1-71 (73)
27 cd01798 parkin_N amino-termina 99.6 3.8E-15 8.3E-20 126.9 7.1 68 607-674 1-68 (70)
28 KOG0005|consensus 99.5 4.2E-15 9.1E-20 117.2 4.2 70 605-674 1-70 (70)
29 cd01794 DC_UbP_C dendritic cel 99.5 1.1E-14 2.4E-19 124.0 6.9 67 608-674 2-68 (70)
30 cd01805 RAD23_N Ubiquitin-like 99.5 2.9E-14 6.3E-19 123.6 8.7 70 605-674 1-72 (77)
31 cd01809 Scythe_N Ubiquitin-lik 99.5 3E-14 6.4E-19 121.7 8.1 70 605-674 1-70 (72)
32 cd01800 SF3a120_C Ubiquitin-li 99.5 3.1E-14 6.8E-19 123.3 7.4 71 612-682 5-76 (76)
33 cd01808 hPLIC_N Ubiquitin-like 99.5 6.4E-14 1.4E-18 119.7 7.5 69 605-674 1-69 (71)
34 cd01792 ISG15_repeat1 ISG15 ub 99.5 8.6E-14 1.9E-18 121.8 7.5 71 604-674 2-74 (80)
35 COG5078 Ubiquitin-protein liga 99.5 2.8E-14 6.2E-19 138.1 4.9 108 525-641 6-118 (153)
36 cd01796 DDI1_N DNA damage indu 99.5 1.2E-13 2.5E-18 118.1 7.0 68 607-674 1-70 (71)
37 PF00240 ubiquitin: Ubiquitin 99.4 1.9E-13 4.1E-18 115.9 7.1 67 610-676 1-68 (69)
38 KOG0425|consensus 99.4 1.4E-13 2.9E-18 129.8 6.3 85 526-614 7-98 (171)
39 cd01790 Herp_N Homocysteine-re 99.4 3.9E-13 8.5E-18 116.1 7.3 71 604-674 1-77 (79)
40 cd01812 BAG1_N Ubiquitin-like 99.4 5.3E-13 1.1E-17 113.8 7.3 69 605-674 1-69 (71)
41 cd01813 UBP_N UBP ubiquitin pr 99.4 6.8E-13 1.5E-17 114.3 7.4 69 605-674 1-72 (74)
42 cd01763 Sumo Small ubiquitin-r 99.4 1.6E-12 3.4E-17 115.7 9.5 79 601-679 8-87 (87)
43 KOG0417|consensus 99.4 3.4E-13 7.5E-18 127.5 4.6 107 526-642 3-114 (148)
44 KOG2188|consensus 99.4 1.4E-10 2.9E-15 131.6 25.2 421 3-511 103-594 (650)
45 KOG0419|consensus 99.3 7.2E-13 1.6E-17 121.2 4.4 109 523-641 3-116 (152)
46 smart00213 UBQ Ubiquitin homol 99.2 1.6E-11 3.4E-16 102.0 6.8 64 605-669 1-64 (64)
47 KOG0426|consensus 99.2 1.2E-11 2.6E-16 113.0 4.4 70 526-599 6-75 (165)
48 cd01815 BMSC_UbP_N Ubiquitin-l 99.2 1.8E-11 3.9E-16 104.4 5.0 53 623-675 19-74 (75)
49 TIGR00601 rad23 UV excision re 99.2 5.2E-11 1.1E-15 132.4 9.5 70 605-674 1-73 (378)
50 PLN00172 ubiquitin conjugating 99.1 6.8E-11 1.5E-15 115.4 7.3 107 526-642 3-114 (147)
51 cd01799 Hoil1_N Ubiquitin-like 99.1 1.2E-10 2.5E-15 100.6 6.7 64 610-674 8-73 (75)
52 cd01814 NTGP5 Ubiquitin-like N 99.1 1.5E-10 3.3E-15 105.2 7.2 76 604-679 4-94 (113)
53 PTZ00390 ubiquitin-conjugating 99.1 2E-10 4.4E-15 112.7 7.5 107 526-642 4-115 (152)
54 KOG0010|consensus 99.0 2.8E-10 6.2E-15 126.4 7.6 70 604-674 15-84 (493)
55 KOG0421|consensus 99.0 4.3E-10 9.4E-15 104.5 6.0 114 522-645 27-145 (175)
56 cd01769 UBL Ubiquitin-like dom 99.0 1.1E-09 2.3E-14 92.2 7.3 66 609-674 2-67 (69)
57 KOG0011|consensus 98.9 2.9E-09 6.2E-14 112.9 8.5 70 605-674 1-72 (340)
58 PF00179 UQ_con: Ubiquitin-con 98.9 6.1E-10 1.3E-14 108.0 3.1 102 528-638 1-108 (140)
59 cd01795 USP48_C USP ubiquitin- 98.9 2.4E-09 5.2E-14 94.6 6.3 59 616-674 16-75 (107)
60 cd00195 UBCc Ubiquitin-conjuga 98.9 2.5E-09 5.4E-14 103.9 5.9 103 527-639 2-110 (141)
61 PF11976 Rad60-SLD: Ubiquitin- 98.8 7.2E-09 1.6E-13 88.6 7.2 70 605-674 1-71 (72)
62 smart00212 UBCc Ubiquitin-conj 98.8 5.2E-09 1.1E-13 102.1 4.3 105 527-640 1-111 (145)
63 KOG0418|consensus 98.7 6.5E-09 1.4E-13 101.5 2.8 107 525-641 4-119 (200)
64 KOG0001|consensus 98.7 1.1E-07 2.4E-12 80.0 8.8 71 607-677 2-73 (75)
65 cd01789 Alp11_N Ubiquitin-like 98.6 1.4E-07 3.1E-12 83.3 9.1 70 605-674 2-79 (84)
66 KOG4574|consensus 98.5 4.3E-07 9.2E-12 105.7 11.3 237 25-271 536-774 (1007)
67 KOG0894|consensus 98.5 1.4E-07 3.1E-12 94.0 4.8 67 525-595 6-72 (244)
68 PF00806 PUF: Pumilio-family R 98.4 1.4E-07 3.1E-12 69.1 2.9 35 32-66 1-35 (35)
69 KOG0424|consensus 98.4 3.9E-07 8.5E-12 85.5 6.2 110 527-642 7-124 (158)
70 KOG4574|consensus 98.4 4.3E-07 9.2E-12 105.7 7.3 260 10-281 557-852 (1007)
71 KOG0422|consensus 98.4 1.1E-07 2.5E-12 88.6 2.1 107 525-640 3-114 (153)
72 PLN02560 enoyl-CoA reductase 98.4 6.5E-07 1.4E-11 97.6 7.9 70 605-674 1-81 (308)
73 KOG0428|consensus 98.4 2.9E-07 6.2E-12 93.1 4.6 69 522-595 9-77 (314)
74 KOG4248|consensus 98.4 6.3E-07 1.4E-11 106.9 7.4 73 606-679 4-77 (1143)
75 PF14560 Ubiquitin_2: Ubiquiti 98.3 1.8E-06 3.8E-11 76.9 7.5 70 605-674 2-81 (87)
76 PF13881 Rad60-SLD_2: Ubiquiti 98.3 6.2E-06 1.3E-10 76.6 10.2 73 605-677 3-90 (111)
77 cd01788 ElonginB Ubiquitin-lik 98.3 2.4E-06 5.2E-11 77.7 7.0 75 605-679 1-84 (119)
78 smart00025 Pumilio Pumilio-lik 98.1 1.6E-06 3.4E-11 63.1 2.6 34 33-66 2-35 (36)
79 KOG0427|consensus 98.1 2.3E-06 5E-11 78.8 3.3 106 524-639 15-125 (161)
80 cd01801 Tsc13_N Ubiquitin-like 98.0 1.3E-05 2.8E-10 69.6 6.0 52 622-673 20-74 (77)
81 PF11543 UN_NPL4: Nuclear pore 98.0 8.4E-06 1.8E-10 71.3 4.6 73 601-674 1-78 (80)
82 cd00196 UBQ Ubiquitin-like pro 97.9 5.2E-05 1.1E-09 60.5 7.3 65 610-674 3-67 (69)
83 PF00806 PUF: Pumilio-family R 97.8 1.1E-05 2.5E-10 58.9 2.7 35 68-103 1-35 (35)
84 KOG0423|consensus 97.6 2.4E-05 5.2E-10 75.3 1.5 64 528-595 14-77 (223)
85 KOG1872|consensus 97.6 0.00011 2.5E-09 82.0 7.0 69 605-674 4-73 (473)
86 KOG3493|consensus 97.3 8.2E-05 1.8E-09 60.6 1.0 69 606-674 3-71 (73)
87 smart00025 Pumilio Pumilio-lik 97.3 0.00025 5.5E-09 51.3 3.6 34 69-103 2-35 (36)
88 cd01811 OASL_repeat1 2'-5' oli 97.1 0.0021 4.6E-08 54.3 7.3 69 605-674 1-74 (80)
89 PF13019 Telomere_Sde2: Telome 96.9 0.0034 7.4E-08 61.6 8.1 78 605-682 1-91 (162)
90 KOG4495|consensus 96.7 0.0018 3.9E-08 57.1 4.2 60 607-667 5-66 (110)
91 KOG1769|consensus 96.7 0.012 2.5E-07 52.9 9.0 75 605-679 21-96 (99)
92 KOG0416|consensus 96.3 0.0019 4.1E-08 62.8 2.0 43 556-599 28-70 (189)
93 PF00789 UBX: UBX domain; Int 96.1 0.031 6.6E-07 48.9 8.3 72 603-674 5-81 (82)
94 PF08817 YukD: WXG100 protein 95.9 0.013 2.9E-07 51.1 5.1 70 605-674 3-79 (79)
95 PF11470 TUG-UBL1: GLUT4 regul 95.9 0.023 4.9E-07 47.7 6.0 62 612-673 4-65 (65)
96 PF10302 DUF2407: DUF2407 ubiq 95.5 0.03 6.5E-07 50.9 5.8 59 607-665 3-66 (97)
97 smart00166 UBX Domain present 95.4 0.074 1.6E-06 46.4 8.1 71 604-674 4-79 (80)
98 KOG0895|consensus 95.0 0.03 6.5E-07 68.5 5.7 68 526-597 284-351 (1101)
99 cd01772 SAKS1_UBX SAKS1-like U 94.9 0.13 2.8E-06 44.9 7.9 69 605-674 5-78 (79)
100 cd01767 UBX UBX (ubiquitin reg 94.5 0.21 4.5E-06 43.2 8.2 67 605-673 3-74 (77)
101 cd01770 p47_UBX p47-like ubiqu 94.5 0.16 3.5E-06 44.3 7.4 69 604-672 4-76 (79)
102 cd01773 Faf1_like1_UBX Faf1 ik 94.4 0.24 5.2E-06 43.6 8.2 70 604-674 5-79 (82)
103 KOG0420|consensus 94.0 0.054 1.2E-06 53.1 3.7 71 524-599 28-99 (184)
104 KOG0895|consensus 93.9 0.014 3E-07 71.3 -0.6 40 556-595 879-918 (1101)
105 KOG0013|consensus 93.9 0.11 2.4E-06 52.8 5.8 62 613-674 155-216 (231)
106 cd01774 Faf1_like2_UBX Faf1 ik 93.9 0.36 7.8E-06 42.8 8.4 71 603-674 3-83 (85)
107 COG5417 Uncharacterized small 93.5 0.4 8.7E-06 40.8 7.5 70 604-673 4-80 (81)
108 cd01771 Faf1_UBX Faf1 UBX doma 93.2 0.58 1.3E-05 41.0 8.6 71 603-674 3-78 (80)
109 KOG3206|consensus 92.3 0.36 7.8E-06 49.0 6.7 71 605-675 2-80 (234)
110 COG5227 SMT3 Ubiquitin-like pr 91.3 0.32 6.9E-06 42.9 4.4 70 605-674 25-94 (103)
111 TIGR00207 fliG flagellar motor 90.9 15 0.00033 41.0 18.6 168 55-226 50-229 (338)
112 PRK06437 hypothetical protein; 90.4 1.8 3.8E-05 36.6 8.1 62 608-678 4-65 (67)
113 PRK05686 fliG flagellar motor 89.5 19 0.00042 40.2 18.0 163 56-223 54-229 (339)
114 KOG1639|consensus 88.3 0.73 1.6E-05 48.1 5.0 70 605-674 1-77 (297)
115 cd06406 PB1_P67 A PB1 domain i 85.2 3.2 7E-05 36.3 6.6 38 616-653 12-49 (80)
116 PRK08364 sulfur carrier protei 82.8 10 0.00023 32.1 8.8 65 605-679 5-70 (70)
117 PF15044 CLU_N: Mitochondrial 82.6 2 4.3E-05 37.3 4.3 54 621-674 1-56 (76)
118 PF14836 Ubiquitin_3: Ubiquiti 81.3 8.1 0.00018 34.5 7.7 64 615-679 14-84 (88)
119 cd00754 MoaD Ubiquitin domain 80.4 7.5 0.00016 33.3 7.3 59 616-679 17-80 (80)
120 PLN02799 Molybdopterin synthas 80.4 7.1 0.00015 34.0 7.2 70 605-679 2-82 (82)
121 PRK06488 sulfur carrier protei 79.9 9.2 0.0002 31.8 7.4 64 605-679 1-65 (65)
122 cd06409 PB1_MUG70 The MUG70 pr 79.7 4.4 9.5E-05 36.1 5.5 43 607-649 3-48 (86)
123 KOG0012|consensus 79.3 2.2 4.9E-05 47.0 4.3 62 613-674 11-74 (380)
124 KOG4250|consensus 79.0 3.1 6.7E-05 49.9 5.6 44 611-654 321-364 (732)
125 PF09379 FERM_N: FERM N-termin 78.3 7.3 0.00016 33.4 6.6 66 609-674 1-75 (80)
126 PF14453 ThiS-like: ThiS-like 77.1 10 0.00022 31.1 6.5 54 605-674 1-54 (57)
127 PRK07194 fliG flagellar motor 75.1 1.5E+02 0.0031 33.3 18.5 87 55-141 48-140 (334)
128 PRK07440 hypothetical protein; 73.4 22 0.00047 30.3 7.9 69 601-679 1-70 (70)
129 cd01760 RBD Ubiquitin-like dom 68.9 10 0.00023 32.5 5.0 45 607-651 2-46 (72)
130 smart00455 RBD Raf-like Ras-bi 68.5 12 0.00025 32.0 5.2 44 608-651 3-46 (70)
131 TIGR01687 moaD_arch MoaD famil 66.3 38 0.00082 29.7 8.3 63 613-679 13-88 (88)
132 PRK05659 sulfur carrier protei 65.1 37 0.00079 28.1 7.6 65 605-679 1-66 (66)
133 PF08144 CPL: CPL (NUC119) dom 64.9 21 0.00045 35.1 6.9 67 216-282 58-133 (148)
134 smart00295 B41 Band 4.1 homolo 64.5 40 0.00087 34.0 9.4 71 604-674 3-81 (207)
135 smart00666 PB1 PB1 domain. Pho 64.4 22 0.00048 30.6 6.3 45 606-651 3-47 (81)
136 KOG4583|consensus 64.3 3.4 7.5E-05 45.1 1.4 73 602-674 7-85 (391)
137 PRK05863 sulfur carrier protei 64.2 33 0.00071 28.6 7.0 64 605-679 1-65 (65)
138 TIGR01682 moaD molybdopterin c 63.7 41 0.00089 29.0 7.9 62 613-679 13-80 (80)
139 PF12754 Blt1: Cell-cycle cont 63.0 2.4 5.2E-05 46.1 0.0 64 603-666 77-160 (309)
140 TIGR00207 fliG flagellar motor 61.7 1.9E+02 0.0042 32.4 14.7 155 93-265 51-230 (338)
141 cd06407 PB1_NLP A PB1 domain i 61.4 27 0.00058 30.8 6.3 46 605-651 1-47 (82)
142 PRK06944 sulfur carrier protei 61.0 55 0.0012 26.9 7.9 64 605-679 1-65 (65)
143 cd00565 ThiS ThiaminS ubiquiti 60.9 38 0.00083 28.0 6.9 60 613-679 5-65 (65)
144 PF11620 GABP-alpha: GA-bindin 60.5 18 0.00039 32.0 4.8 59 616-674 4-62 (88)
145 PF02597 ThiS: ThiS family; I 59.6 30 0.00066 29.2 6.3 62 616-679 13-77 (77)
146 PTZ00380 microtubule-associate 59.4 14 0.0003 35.1 4.3 66 586-662 23-88 (121)
147 PRK05686 fliG flagellar motor 59.1 3E+02 0.0064 30.8 17.3 148 94-260 55-228 (339)
148 PF14451 Ub-Mut7C: Mut7-C ubiq 57.4 34 0.00074 30.1 6.2 52 614-674 22-74 (81)
149 PRK06083 sulfur carrier protei 55.9 63 0.0014 28.6 7.7 66 604-679 18-84 (84)
150 PF00564 PB1: PB1 domain; Int 55.7 35 0.00076 29.4 6.1 46 605-651 2-48 (84)
151 KOG0429|consensus 55.4 11 0.00024 38.9 3.1 66 524-594 19-86 (258)
152 TIGR01683 thiS thiamine biosyn 52.7 60 0.0013 26.8 6.8 60 613-679 4-64 (64)
153 PRK08053 sulfur carrier protei 52.1 94 0.002 25.9 7.9 65 605-679 1-66 (66)
154 cd06411 PB1_p51 The PB1 domain 50.5 42 0.00092 29.3 5.5 36 616-651 8-43 (78)
155 smart00154 ZnF_AN1 AN1-like Zi 49.4 13 0.00029 27.9 2.0 26 758-797 12-37 (39)
156 KOG2213|consensus 48.2 4.8E+02 0.01 29.9 17.8 107 178-288 131-251 (460)
157 PF02196 RBD: Raf-like Ras-bin 47.4 49 0.0011 28.2 5.5 53 607-659 3-57 (71)
158 cd06408 PB1_NoxR The PB1 domai 47.1 88 0.0019 27.9 7.1 46 605-652 3-48 (86)
159 PF05773 RWD: RWD domain; Int 46.3 21 0.00045 32.4 3.4 62 528-594 5-68 (113)
160 PF14732 UAE_UbL: Ubiquitin/SU 45.3 39 0.00085 30.1 4.7 54 619-674 2-67 (87)
161 TIGR02958 sec_mycoba_snm4 secr 44.5 82 0.0018 36.8 8.5 68 606-674 4-78 (452)
162 KOG2086|consensus 43.6 32 0.00069 38.7 4.7 68 604-671 305-376 (380)
163 cd05992 PB1 The PB1 domain is 41.5 69 0.0015 27.3 5.7 44 607-651 3-47 (81)
164 PRK07696 sulfur carrier protei 40.6 1.5E+02 0.0032 24.9 7.3 65 605-679 1-67 (67)
165 COG2104 ThiS Sulfur transfer p 37.1 2.3E+02 0.005 24.1 7.9 59 614-679 9-68 (68)
166 PF14533 USP7_C2: Ubiquitin-sp 36.8 64 0.0014 33.6 5.5 112 518-644 35-162 (213)
167 cd01817 RGS12_RBD Ubiquitin do 36.0 1.6E+02 0.0034 25.5 6.7 42 611-652 6-47 (73)
168 PF10790 DUF2604: Protein of U 34.1 1.5E+02 0.0032 25.0 5.9 62 613-674 4-69 (76)
169 PRK11840 bifunctional sulfur c 33.9 1.9E+02 0.0041 32.3 8.7 67 605-681 1-68 (326)
170 COG2051 RPS27A Ribosomal prote 33.8 28 0.0006 29.3 1.8 21 723-743 14-34 (67)
171 PF08783 DWNN: DWNN domain; I 33.5 71 0.0015 27.7 4.3 33 608-640 2-36 (74)
172 PRK01777 hypothetical protein; 33.3 2.7E+02 0.0058 25.3 8.2 63 604-675 3-75 (95)
173 PF08337 Plexin_cytopl: Plexin 32.7 47 0.001 39.4 4.1 73 604-676 189-290 (539)
174 KOG2689|consensus 32.5 97 0.0021 33.4 6.0 72 603-674 209-285 (290)
175 PF11069 DUF2870: Protein of u 32.4 56 0.0012 29.8 3.6 22 646-668 3-24 (98)
176 PF02017 CIDE-N: CIDE-N domain 32.4 90 0.002 27.3 4.8 48 625-674 21-70 (78)
177 PF04286 DUF445: Protein of un 31.7 6.4E+02 0.014 27.7 13.0 51 210-262 289-342 (367)
178 smart00144 PI3K_rbd PI3-kinase 31.2 2E+02 0.0044 26.5 7.3 74 601-674 14-102 (108)
179 COG1536 FliG Flagellar motor s 31.2 8E+02 0.017 27.6 17.0 163 54-222 51-228 (339)
180 PF00794 PI3K_rbd: PI3-kinase 30.7 1.8E+02 0.0039 26.5 6.9 74 601-674 13-100 (106)
181 cd01777 SNX27_RA Ubiquitin dom 30.3 77 0.0017 28.3 4.1 41 606-646 3-43 (87)
182 cd06396 PB1_NBR1 The PB1 domai 29.6 1.2E+02 0.0027 26.7 5.2 35 607-642 3-39 (81)
183 PRK00415 rps27e 30S ribosomal 27.5 47 0.001 27.5 2.1 22 722-743 5-26 (59)
184 PF14533 USP7_C2: Ubiquitin-sp 26.7 1.7E+02 0.0036 30.5 6.6 58 615-674 34-99 (213)
185 cd01818 TIAM1_RBD Ubiquitin do 26.5 1.2E+02 0.0026 26.4 4.4 40 608-647 3-42 (77)
186 PF01667 Ribosomal_S27e: Ribos 25.9 44 0.00095 27.3 1.6 21 723-743 2-22 (55)
187 PF10925 DUF2680: Protein of u 25.8 3.5E+02 0.0076 22.4 6.9 54 22-81 2-57 (59)
188 smart00266 CAD Domains present 25.8 1.5E+02 0.0034 25.7 5.0 55 617-674 12-68 (74)
189 cd01764 Urm1 Urm1-like ubuitin 25.3 1.4E+02 0.0031 26.9 5.0 59 619-679 23-94 (94)
190 smart00314 RA Ras association 25.1 1.9E+02 0.0041 25.3 5.8 44 605-648 5-51 (90)
191 KOG1296|consensus 25.0 41 0.00088 32.8 1.5 43 724-781 26-68 (161)
192 cd01768 RA RA (Ras-associating 24.1 2E+02 0.0042 25.0 5.7 35 614-648 12-48 (87)
193 cd06410 PB1_UP2 Uncharacterize 24.0 2E+02 0.0043 26.3 5.7 40 609-649 17-56 (97)
194 KOG3076|consensus 23.8 1.3E+02 0.0028 30.9 4.8 95 529-638 79-181 (206)
195 PRK07194 fliG flagellar motor 23.3 3.3E+02 0.0071 30.5 8.6 134 51-220 26-163 (334)
196 PRK14720 transcript cleavage f 22.5 1.7E+03 0.037 28.5 16.5 94 12-105 36-141 (906)
197 cd01615 CIDE_N CIDE_N domain, 22.3 2E+02 0.0043 25.3 5.0 63 608-674 6-70 (78)
198 PF01428 zf-AN1: AN1-like Zinc 21.4 59 0.0013 24.8 1.5 28 757-798 12-39 (43)
199 cd01766 Ufm1 Urm1-like ubiquit 21.3 4.2E+02 0.0091 23.0 6.6 61 618-678 19-81 (82)
200 PTZ00083 40S ribosomal protein 21.0 93 0.002 27.6 2.8 24 720-743 27-50 (85)
201 KOG1364|consensus 20.8 85 0.0018 35.0 3.1 66 605-670 278-349 (356)
202 PRK11130 moaD molybdopterin sy 20.4 5.4E+02 0.012 22.2 7.6 56 619-679 19-81 (81)
203 PF10209 DUF2340: Uncharacteri 20.4 1.7E+02 0.0037 27.8 4.6 54 621-674 22-106 (122)
No 1
>KOG2050|consensus
Probab=100.00 E-value=6e-91 Score=764.06 Aligned_cols=469 Identities=33% Similarity=0.485 Sum_probs=418.8
Q ss_pred CccccccCCchHHHHhhhhcCCHHHHHHHHHHHhHHHHHhhcCcchhHHHHHHHhcCCHHHHHHHHHHHhHHHHHHhhCc
Q psy15035 1 MGQIVFSHDMSRIIQWLLKLSSPQMKKDIVKELLPFTVAMIKSKYSNALVKHMLKSGDENTKNEIIKALQPHVVTLLSHT 80 (816)
Q Consensus 1 i~~l~~~hd~sRvIQ~~lk~gt~eqR~~I~~EL~~~i~eL~~d~yg~~vVQKlL~~gs~eqr~~Ii~e~~g~v~~L~~h~ 80 (816)
|.+|+++||+|||||+|++||++++|++||+||.|.+++||+++||.|+|||||+||+++||+.||++|+||+++|++|+
T Consensus 166 i~~lv~aHDtSRViQt~Vky~s~~~r~~if~eL~p~~v~l~kskY~k~~v~KmLkyGsk~q~a~iI~sl~Ghv~kLlRH~ 245 (652)
T KOG2050|consen 166 ISKLVFAHDTSRVIQTCVKYGSEAQREQIFEELLPFFVELAKSKYAKFFVQKMLKYGSKAQKAKIINSLRGHVVKLLRHR 245 (652)
T ss_pred HHHHHHHhhhHHHHHHHHHhcCHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHhcCCHHHHHHHHHHHhhhHHHHHhhh
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CchHHHHHHHHhcCCHHHHHHHHHHHhcCcceeeccCCcchhHHhhcCChhHHHHHHHHHHHHHHHhhhhhcccCCcchh
Q psy15035 81 TASPVLMYAHDQVASPAQKLAMRQELYGGLYESTGDKKINCLGDIFEQSPEMKTAILSVTKKTILKSLQKTQVTGSALLH 160 (816)
Q Consensus 81 ~G~~VVqk~~~~~at~eQr~~Li~e~yg~~~~l~kd~~~~~l~~ile~~pekk~~Il~~l~~~l~~lv~K~~~~~~~ivh 160 (816)
+|++||+++|++|+|.+||+.|+.||||++|.+|++....+|.++++..|++|..|+++|.++|.++++| +.++++++|
T Consensus 246 eaa~Vve~ay~~~A~l~Qr~~li~EfYG~efqlfK~sn~~Tl~kil~~~pekk~~I~~~l~~~I~~v~eK-g~v~~tivH 324 (652)
T KOG2050|consen 246 EAAYVVEYAYNDFATLEQRQYLIQEFYGDEFQLFKDSNDKTLDKILAEAPEKKASILRHLKAIITPVAEK-GSVDHTIVH 324 (652)
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHhhHHHHHHhccCcccHHHHHHhChHhHHHHHHHHHHHhHHHhhc-chhHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999 999999999
Q ss_pred hhHHHhhhcCCChhhHHHHHHHhCCCCccccccCcChHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHhhCcCchHHHHHH
Q psy15035 161 AVLLDFISHSSDSPDLMEVLEMLAPLPLLPFVHSKAGASVAMHIIWNATNKLKKKIVKELKGHLREVATSEFGHLVLVTL 240 (816)
Q Consensus 161 ~vl~ey~~~~~~~~~~~~iie~l~~~~l~~L~~tk~Gs~Vv~~cl~~~~~kdRk~Iik~lk~~v~~La~d~~G~~Vlq~~ 240 (816)
++|++|+.+|++ +.+.++++.+++. +++|+||++||+|+++|+|+|+||+||.|||+||+|+.++|.|+|||+||.++
T Consensus 325 k~mlEy~~~ade-~e~~e~l~ll~el-v~e~vHT~dGS~vAm~li~~a~aKeRK~IiK~~K~h~~K~A~~~yGh~vlia~ 402 (652)
T KOG2050|consen 325 KLMLEYLTIADE-EEKSELLELLKEL-VPEMVHTRDGSRVAMKLIWHATAKERKLIIKNMKEHVEKIANDEYGHLVLIAL 402 (652)
T ss_pred HHHHHHHHhCCH-HHHHHHHHHHHHH-HHHHhcCCchHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHhhccCceehhhh
Confidence 999999999999 9999999999999 99999999999999999999999999999999999999999999999999999
Q ss_pred HccCCchHHHHHHHHHHHHHhHHhHhcChhhHHHHHHhhccCCCCCcCHHHHHhhccCCccccCCCCHHHHHHHHHHhhc
Q psy15035 241 LDNVDDTLLLKKALLPELLAEVVPLANHEYGRKVIAHLVSWCDPGFFHPTCIAHVKSGDEFSTSKKDRDIRNKEILEAVS 320 (816)
Q Consensus 241 l~~~DDt~l~~k~Iv~eL~~~l~~L~~d~yG~~Vl~~Ll~~~~~~~f~~~i~~~L~~~~~~~~sKKd~~~Rr~EL~~~~~ 320 (816)
|+|+|||+++.|.|++++.+.+..|..|+|||+|++||+.|+|++||+|+.+++|++++.+.+|||||.+||.||+..++
T Consensus 403 ldc~DDT~l~kk~i~~e~~~el~~li~Dk~Grrv~lyll~p~D~~~f~~e~ie~l~~~d~~k~sKKdp~vRr~eLla~is 482 (652)
T KOG2050|consen 403 LDCTDDTKLLKKLIYDELKSELKSLISDKYGRRVILYLLAPRDGRYFVPEFIEVLEELDSNKHSKKDPLVRRIELLAAIS 482 (652)
T ss_pred hcccchHHHHHHHHHHHHHHHHHHHhccchhhhhhhhhccCCccccccHHHHHHHHhcccccccccCHHHHHHHHHHhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHhcHHHHHccCChhH-HHHHHHhccCCc----ChHHHHHHHHHHHhhhccccchhhhhccccCchhhhhhhhh
Q psy15035 321 EPLLSSIAKDADFWLSTGSVAM-VTAVILKNALGP----GLKEAFDSVANVIVDLERRVPLELKKDFASGNKNKQKKAAQ 395 (816)
Q Consensus 321 ~~Ll~~i~~~~~~ll~d~~g~~-vv~~iL~~~~g~----~~~~~~~aia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 395 (816)
|.|+.+|.+|+++++.+++||+ +|..+|....|+ +++.+.+++..... .+
T Consensus 483 p~lis~~s~~aeeil~e~~~~~~lV~~~l~~~~~~~d~~~~q~~a~a~l~~~~----~~--------------------- 537 (652)
T KOG2050|consen 483 PSLISLLSENAEEILAEALKSQVLVEASLGAEDGDKDPDEKQAAAEAALPAFK----AI--------------------- 537 (652)
T ss_pred HHHHHHHHHhHHHHHHHhhcceeeHHhhhcCcccccChhhHHHHHHHHHHHhc----cC---------------------
Confidence 9999999999999999999999 576777766665 23345555433220 00
Q ss_pred hccCCCccccccCCCCCCCcccCCCCccccCCCcccCchhHHHHHHHHhcCccccc-------ccCcch--HHHHHHhcC
Q psy15035 396 QNKGGEKNQTAQGKKGTEGKKEAGNEKEEETTPFIEHPGFHTVLKKLLQHDRDNVA-------KELPTL--SESIVAKAS 466 (816)
Q Consensus 396 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~lk~Li~~~~~~~~-------~~~~~f--~~~l~~~i~ 466 (816)
|..+++ ..|..++|.+|.++ .|+|.|+.. .+...| +..|++++.
T Consensus 538 ---------------~~~~~~---------p~h~~~~~~~~~il---~q~g~w~~~~~k~~~~~~~~g~~~~k~l~e~l~ 590 (652)
T KOG2050|consen 538 ---------------PEEAKK---------PKHQEEEPAAHLIL---GQEGAWMHIEKKRILKNNREGEGVPKLLLENLS 590 (652)
T ss_pred ---------------cccccC---------CcchhcccchhhHH---hccccchhHHHHHHhhhcCCccccHHHHHHHhh
Confidence 011111 14555566655553 344444332 112222 269999999
Q ss_pred hhhHhhhhccCCceeehHHHhhcCChhhHHHHHhhhcchhhh--hcccccccceeeecch
Q psy15035 467 KEVLDFWTKCNRACFILVLILESGMESCVSELKSKLSPFKTK--LSSQKFSGAKVLLIVP 524 (816)
Q Consensus 467 ~~~l~~w~~~nr~~fvl~~llE~~~~~~~~~~~~~lk~~~~~--l~~~~~~Ga~~ll~vp 524 (816)
+.+|.+|+++|||||||++|+|+.+..+.+..+..+...... ++...++|+++|++..
T Consensus 591 sk~L~sWa~~nrg~fvL~allE~~~~~v~~k~ka~~~r~~~~~~~~~~a~kg~~~L~~~l 650 (652)
T KOG2050|consen 591 SKNLKSWASVNRGCFVLLALLETCDDQVEEKKKAKLLRLVLSGILKDSATKGAELLAEKL 650 (652)
T ss_pred HHHHHHHHccCcchhhHHHHHHhcCHHhhhhHHHHHHHhhhhhhcccccCccHHHHHHHh
Confidence 999999999999999999999999999988888877766553 4445688999987643
No 2
>KOG0006|consensus
Probab=100.00 E-value=4.4e-48 Score=395.76 Aligned_cols=199 Identities=33% Similarity=0.596 Sum_probs=164.2
Q ss_pred eEEEEEec---CCceEEEEcCCCCcHHHHHHHHhhhhCCCCCCeEEEECCeecCCCccccccCCCCCCEEEEeeCCCC--
Q psy15035 605 LMINIKSN---TGNTVCVNLDPASDIRNVKEMIAPKLGLKYEEVKIIFAGKELEDTTIISECDLGQQSILHAVKSSPE-- 679 (816)
Q Consensus 605 M~V~Vk~~---~g~t~~v~V~~~~TV~~LK~~I~~~~Gip~~~qrLif~Gk~L~d~~tL~~~~I~~~stl~lvr~~gg-- 679 (816)
|.++|+.+ ..++++|+|+.+.+|.+||+.|++++|+|+++.++||+||+|+++.|++.|++.+++.+|++++++-
T Consensus 1 m~~lvqf~~~~~~h~l~v~v~~~t~I~~lke~Vak~~gvp~D~L~viFaGKeLs~~ttv~~cDL~qqs~~hi~~lRP~~~ 80 (446)
T KOG0006|consen 1 MIVLVQFNKTGSSHGLPVEVDSDTSIFQLKEVVAKRQGVPADQLRVIFAGKELSNDTTVQNCDLSQQSATHIMLLRPWRK 80 (446)
T ss_pred CeEEEEeCCccccCceeEEEecCCCHHHHHHHHHHhhCCChhheEEEEeccccccCceeecccccccchhhhhccCcccc
Confidence 56777776 4467899999999999999999999999999999999999999999999999999999999954442
Q ss_pred C---CcCCC-----------CCCCCCcccccccccchhhhccCCCCCCCCCCCCCCCcccc-------------ceeccC
Q psy15035 680 N---NKIQK-----------SKPMNSTLTDFHIQELDEESARSSSPDITQEPVTPSKAHFY-------------LRVRCA 732 (816)
Q Consensus 680 ~---~~~~~-----------~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~-------------lRv~C~ 732 (816)
+ +.+++ ..|.++..-++.|.+. +.-.+..+...+.++||| |||||+
T Consensus 81 ~qk~ns~~~~e~Epslt~~a~~p~~~~~l~~~l~td-------sr~~~~~~~~~si~~sFyV~Ck~Cd~v~~GKLRV~C~ 153 (446)
T KOG0006|consen 81 GQKFNSTGGDENEPSLTNGATLPGDSVGLTAKLTTD-------SRKDAGSPAGRSILGSFYVWCKNCDDVKRGKLRVYCQ 153 (446)
T ss_pred ccccccccccccCccccccccccCcccceeeEeeec-------cccccCCcccceecceeEEEecchhhccCCceEEEee
Confidence 1 11222 2222233323333222 111222233488899999 999999
Q ss_pred cCCCceeEecCCCCCccccccCcceeccccCCCCCCCCcccceeEeecccccccCCCCCccccccccccccCCccccccc
Q psy15035 733 QCKSGAVIVDRDPQSWSDVLEPRQISCHCTEEHCTTGPVSWAEFYFKCAQHVSANMNQVDECLPLSLVTSNVRKIPCLAC 812 (816)
Q Consensus 733 ~C~~~~~t~~~~p~~w~dvl~~~ri~g~c~~~~c~~~~~~~a~f~fkc~~h~~~~~~~~~~~~~l~~~~~n~~~~~c~~c 812 (816)
+|++++|||+++||||||||+|+||+|+|++++| |+.||||||||++||++ |+|+++||+||++|+|+|+|++|
T Consensus 154 ~C~~~s~tv~~~P~cWdDVLks~Ripg~Ces~~~---pg~fAEFfFKC~ah~~~---~k~~aa~lhli~~N~~ni~C~~C 227 (446)
T KOG0006|consen 154 KCSSTSVTVKSEPQCWDDVLKSKRIPGVCESCCT---PGLFAEFFFKCGAHPTS---DKETAAALHLIATNSRNITCITC 227 (446)
T ss_pred cccCceEEEecCccchhhhhhcccCccccccccC---CcchHhheehhccCCCc---cccchhHHHHhhcccccceeEEe
Confidence 9999999999999999999999999999999777 45899999999999997 79999999999999999999999
Q ss_pred ccCC
Q psy15035 813 TDVW 816 (816)
Q Consensus 813 ~d~~ 816 (816)
|||+
T Consensus 228 tdv~ 231 (446)
T KOG0006|consen 228 TDVR 231 (446)
T ss_pred cCCc
Confidence 9986
No 3
>cd07920 Pumilio Pumilio-family RNA binding domain. Puf repeats (also labelled PUM-HD or Pumilio homology domain) mediate sequence specific RNA binding in fly Pumilio, worm FBF-1 and FBF-2, and many other proteins such as vertebrate Pumilio. These proteins function as translational repressors in early embryonic development by binding to sequences in the 3' UTR of target mRNAs, such as the nanos response element (NRE) in fly Hunchback mRNA, or the point mutation element (PME) in worm fem-3 mRNA. Other proteins that contain Puf domains are also plausible RNA binding proteins. Yeast PUF1 (JSN1), for instance, appears to contain a single RNA-recognition motif (RRM) domain. Puf repeat proteins have been observed to function asymmetrically and may be responsible for creating protein gradients involved in the specification of cell fate and differentiation. Puf domains usually occur as a tandem repeat of 8 domains. This model encompasses all 8 tandem repeats. Some proteins may have fewer (canon
Probab=100.00 E-value=2.6e-41 Score=370.82 Aligned_cols=302 Identities=19% Similarity=0.271 Sum_probs=273.1
Q ss_pred CccccccCCchHHHHhhhhcCCHHHHHHHHHHHhHHHHHhhcCcchhHHHHHHHhcCCHHHHHHHHHHHhHHHHHHhhCc
Q psy15035 1 MGQIVFSHDMSRIIQWLLKLSSPQMKKDIVKELLPFTVAMIKSKYSNALVKHMLKSGDENTKNEIIKALQPHVVTLLSHT 80 (816)
Q Consensus 1 i~~l~~~hd~sRvIQ~~lk~gt~eqR~~I~~EL~~~i~eL~~d~yg~~vVQKlL~~gs~eqr~~Ii~e~~g~v~~L~~h~ 80 (816)
+.++|.+|+|||+||++|+++++++|.+||++|.|++.+||.|+||||||||+++++++++|..|++++.|++++|+.|+
T Consensus 12 ~~~l~~~~~gsr~lQ~~l~~~~~~~~~~i~~~l~~~~~~l~~~~~g~~vvq~~l~~~~~~~~~~i~~~~~~~~~~l~~~~ 91 (322)
T cd07920 12 IVEFAKDQHGSRFLQQKLEEATPEEKELIFDEILPHVVELMVDPFGNYVIQKLFEHGTEEQRLQLLEKILGHVVRLSLDM 91 (322)
T ss_pred hhhccCCchhhHHHHHHhccCCHHHHHHHHHHHHHhHHHHhcCccccHHHHHHHHhCCHHHHHHHHHHHHHHHHHHcccc
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CchHHHHHHHHhcCCHHHHHHHHHHHhcCcceeeccC-CcchhHHhhcC-ChhHHHHHHHHHHHHHHHhhhhhcccCCcc
Q psy15035 81 TASPVLMYAHDQVASPAQKLAMRQELYGGLYESTGDK-KINCLGDIFEQ-SPEMKTAILSVTKKTILKSLQKTQVTGSAL 158 (816)
Q Consensus 81 ~G~~VVqk~~~~~at~eQr~~Li~e~yg~~~~l~kd~-~~~~l~~ile~-~pekk~~Il~~l~~~l~~lv~K~~~~~~~i 158 (816)
|||+|||++| ++++++|+..|+++++++...|++|. |+++++++++. .|+.+..|++.+.+.+..+... ..|+.+
T Consensus 92 ~g~~vlqkll-~~~~~~~~~~i~~~l~~~~~~L~~d~~gn~Vvq~~l~~~~~~~~~~i~~~l~~~~~~l~~~--~~G~~v 168 (322)
T cd07920 92 YGCRVIQKLL-ESISEEQISLLVKELRGHVVELVKDQNGNHVIQKCIEKFPPEDLQFIIDAFKGNCVALSTH--PYGCRV 168 (322)
T ss_pred hhHHHHHHHH-HhcCHHHHHHHHHHHHHCHHHHhhcccccHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHcC--ccccHH
Confidence 9999999999 58889999999999999999999998 99999999998 5789999999999999888876 577777
Q ss_pred hhhhHHHhhhcCCChhhHHHHHHHhCCCCccccccCcChHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHhhCcCchHHHH
Q psy15035 159 LHAVLLDFISHSSDSPDLMEVLEMLAPLPLLPFVHSKAGASVAMHIIWNATNKLKKKIVKELKGHLREVATSEFGHLVLV 238 (816)
Q Consensus 159 vh~vl~ey~~~~~~~~~~~~iie~l~~~~l~~L~~tk~Gs~Vv~~cl~~~~~kdRk~Iik~lk~~v~~La~d~~G~~Vlq 238 (816)
+++++ ..+++ +++..+++.+.++ +..|+.+++|++|+|++++++++++++.|++.+++++..|++|+||++|++
T Consensus 169 vq~~l----~~~~~-~~~~~l~~~l~~~-~~~L~~d~~Gn~vvq~~l~~~~~~~~~~i~~~l~~~~~~l~~~k~Gs~Vve 242 (322)
T cd07920 169 IQRCL----EHCSE-EQREPLLEEILEH-ALELVQDQFGNYVVQHVLELGDPDDTSRIIEKLLGNIVQLSCHKFASNVVE 242 (322)
T ss_pred HHHHH----HhCCH-HHHHHHHHHHHHH-HHHHhcCCchhhHHHHHHhcCCHHHHHHHHHHHHHHHHHHHcCcchHHHHH
Confidence 77655 44666 8999999999999 999999999999999999999999999999999999999999999999999
Q ss_pred HHHccCCchHHHHHHHHHHHH------HhHHhHhcChhhHHHHHHhhccCCCCCcCHHHHHhhccCCccccCCCCHHHHH
Q psy15035 239 TLLDNVDDTLLLKKALLPELL------AEVVPLANHEYGRKVIAHLVSWCDPGFFHPTCIAHVKSGDEFSTSKKDRDIRN 312 (816)
Q Consensus 239 ~~l~~~DDt~l~~k~Iv~eL~------~~l~~L~~d~yG~~Vl~~Ll~~~~~~~f~~~i~~~L~~~~~~~~sKKd~~~Rr 312 (816)
++|+..+. ..++.|++++. +++.+|+.|+||++||+++|...++ ..+
T Consensus 243 ~~l~~~~~--~~~~~ii~~l~~~~~~~~~l~~l~~d~~Gn~Viq~~l~~~~~-------------------------~~~ 295 (322)
T cd07920 243 KCLKHASK--EERELIIDEILASGNETSALDTLMKDQYGNYVIQTALDVAKE-------------------------EQR 295 (322)
T ss_pred HHHHHCCH--HHHHHHHHHHhcCCCchhHHHHHhCCCcccHHHHHHHHhCCH-------------------------HHH
Confidence 99999864 45788999995 4889999999999999999976441 112
Q ss_pred HHHHHhhchhHHHHHHhcHHHHHccCChhHHHHH
Q psy15035 313 KEILEAVSEPLLSSIAKDADFWLSTGSVAMVTAV 346 (816)
Q Consensus 313 ~EL~~~~~~~Ll~~i~~~~~~ll~d~~g~~vv~~ 346 (816)
++ +++.+..++.+|..+++|+.|+..
T Consensus 296 ~~--------i~~~l~~~~~~L~~~~~G~~v~~~ 321 (322)
T cd07920 296 EL--------LVEAIRPHLPSLRKSPYGKHILAK 321 (322)
T ss_pred HH--------HHHHHHHHHHHHcCCCcHHHHHHh
Confidence 22 344456678888899999999864
No 4
>KOG1488|consensus
Probab=100.00 E-value=3.9e-40 Score=367.88 Aligned_cols=293 Identities=15% Similarity=0.234 Sum_probs=246.3
Q ss_pred CccccccCCchHHHHhhhhcCCH-HHHHHHHHHHhHHHHHhhcCcchhHHHHHHHhcCCHHHHHHHHHHHhHHHHHHhhC
Q psy15035 1 MGQIVFSHDMSRIIQWLLKLSSP-QMKKDIVKELLPFTVAMIKSKYSNALVKHMLKSGDENTKNEIIKALQPHVVTLLSH 79 (816)
Q Consensus 1 i~~l~~~hd~sRvIQ~~lk~gt~-eqR~~I~~EL~~~i~eL~~d~yg~~vVQKlL~~gs~eqr~~Ii~e~~g~v~~L~~h 79 (816)
+++++.+++|||+||+.++..+. +++..||+||.+.+.+||.|.||||||||+++||+.+||..+...++||+..|+.+
T Consensus 181 ~v~f~~Dq~GsrfiQqkl~~~~~~~ek~~if~ei~~~~~~L~~dvFGNyvIQkffE~gt~~q~~~l~~~~~g~v~~Lsld 260 (503)
T KOG1488|consen 181 LVEFAKDQHGSRFIQQKLETASDNEEKQAVFDEILPPALELMTDVFGNYVIQKFFEHGTEDQRNLLHSQIKGHVLELSLD 260 (503)
T ss_pred ceeecCCcccchHHHHhccccccHHHHHHHHHHHHHHHHHHHHHHhcCchhhhhhccCCHHHHHHHHHHHHhhhhhhhcc
Confidence 46899999999999999999988 99999999999999999999999999999999999999999999999999999999
Q ss_pred cCchHHHHHHHHhcCCHHHHHHHHHHHhcCcceeeccC-CcchhHHhhcCChhHHHHHHHHHHHHHHHhhhhhcccCCcc
Q psy15035 80 TTASPVLMYAHDQVASPAQKLAMRQELYGGLYESTGDK-KINCLGDIFEQSPEMKTAILSVTKKTILKSLQKTQVTGSAL 158 (816)
Q Consensus 80 ~~G~~VVqk~~~~~at~eQr~~Li~e~yg~~~~l~kd~-~~~~l~~ile~~pekk~~Il~~l~~~l~~lv~K~~~~~~~i 158 (816)
+|||||||+++ ++-+..++..|++|+-++..++.+|. ++|++|+++|.
T Consensus 261 ~ygCRVIQkal-e~id~~~~~~Li~ELd~~vl~~v~DQngnHViQK~ie~------------------------------ 309 (503)
T KOG1488|consen 261 MYGCRVIQKAL-EKVDVSLQIQLIDELDGHLLKCVKDQNGNHVIQKCIET------------------------------ 309 (503)
T ss_pred cccchhHHHHH-HhcCHHHHHHHHHHHHhhHHHHHhhcccceehhhhhhc------------------------------
Confidence 99999999999 58888888888888866666555554 55555555544
Q ss_pred hhhhHHHhhhcCCChhhHHHHHHHhCC--CCccccccCcChHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHhhCcCchHH
Q psy15035 159 LHAVLLDFISHSSDSPDLMEVLEMLAP--LPLLPFVHSKAGASVAMHIIWNATNKLKKKIVKELKGHLREVATSEFGHLV 236 (816)
Q Consensus 159 vh~vl~ey~~~~~~~~~~~~iie~l~~--~~l~~L~~tk~Gs~Vv~~cl~~~~~kdRk~Iik~lk~~v~~La~d~~G~~V 236 (816)
.++ +....|++.+.+ + +..++.+++||+|+|++|+++++++...|+.+|..++..|+.|+|||||
T Consensus 310 -----------~p~-~~~~Fiv~~f~~~~~-~~~ls~~~YGCRVIQr~lE~c~~~~~~~i~~ei~~~~~~L~~dQygNYV 376 (503)
T KOG1488|consen 310 -----------LPP-DAWQFIVDFFSGDDN-LLELSTHKYGCRVIQRILEHCSEDQKQPLMEEIIRNCDQLAQDQYGNYV 376 (503)
T ss_pred -----------cCh-HHHHHHHHHhcCCCc-eeEeeccCcccHHHHHHhhcCChHhhhHHHHHHHHHHHHHHhhhhhhHH
Confidence 333 555566666666 7 9999999999999999999999999999999999999999999999999
Q ss_pred HHHHHccCCchHHHHHHHHHHHHHhHHhHhcChhhHHHHHHhhccCCCCCcCHHHHHhhccCCccccCCCCHHHHHHHHH
Q psy15035 237 LVTLLDNVDDTLLLKKALLPELLAEVVPLANHEYGRKVIAHLVSWCDPGFFHPTCIAHVKSGDEFSTSKKDRDIRNKEIL 316 (816)
Q Consensus 237 lq~~l~~~DDt~l~~k~Iv~eL~~~l~~L~~d~yG~~Vl~~Ll~~~~~~~f~~~i~~~L~~~~~~~~sKKd~~~Rr~EL~ 316 (816)
||+++++.+. ..+..|++.|.+++..++.+||+++|+..+|....+..+.-.+-+++...++.+
T Consensus 377 IQHVie~g~~--~~~~~I~~~l~~~ll~~Sq~KfASnVVEk~~~~a~~~~r~~i~~Ei~~~~~~~~-------------- 440 (503)
T KOG1488|consen 377 IQHVIEHGSP--YRDTIIIKCLLGNLLSMSQHKFASNVVEKAFLFAPPLLRALIMNEIFPGYVEHP-------------- 440 (503)
T ss_pred HHHHHhcCCh--hhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHhcCCccCCc--------------
Confidence 9999998654 456778999999999999999999999999976554333333333333332211
Q ss_pred HhhchhHHHHHHhcHHHHHccCChhHHHHHHHhccCCcChHHHHHHHHH
Q psy15035 317 EAVSEPLLSSIAKDADFWLSTGSVAMVTAVILKNALGPGLKEAFDSVAN 365 (816)
Q Consensus 317 ~~~~~~Ll~~i~~~~~~ll~d~~g~~vv~~iL~~~~g~~~~~~~~aia~ 365 (816)
+-+..||.|.|||||||.++..+..+++...+.+|-.
T Consensus 441 ------------~~L~~mmkdQYgNYVVQkmi~~~~~~q~~~i~~rI~~ 477 (503)
T KOG1488|consen 441 ------------DALDIMMKDQYGNYVVQKMIDICGPEQRELIKSRVKP 477 (503)
T ss_pred ------------cHHHHHHHHhhhhhHHHHHHHhcCHHHHHHHHHHHHH
Confidence 2357799999999999999999977766666666543
No 5
>cd07920 Pumilio Pumilio-family RNA binding domain. Puf repeats (also labelled PUM-HD or Pumilio homology domain) mediate sequence specific RNA binding in fly Pumilio, worm FBF-1 and FBF-2, and many other proteins such as vertebrate Pumilio. These proteins function as translational repressors in early embryonic development by binding to sequences in the 3' UTR of target mRNAs, such as the nanos response element (NRE) in fly Hunchback mRNA, or the point mutation element (PME) in worm fem-3 mRNA. Other proteins that contain Puf domains are also plausible RNA binding proteins. Yeast PUF1 (JSN1), for instance, appears to contain a single RNA-recognition motif (RRM) domain. Puf repeat proteins have been observed to function asymmetrically and may be responsible for creating protein gradients involved in the specification of cell fate and differentiation. Puf domains usually occur as a tandem repeat of 8 domains. This model encompasses all 8 tandem repeats. Some proteins may have fewer (canon
Probab=100.00 E-value=4.9e-39 Score=352.80 Aligned_cols=266 Identities=18% Similarity=0.283 Sum_probs=251.5
Q ss_pred ccccccCCchHHHHhhhhcCCHHHHHHHHHHHhHHHHHhhcCcchhHHHHHHHhcCCHHHHHHHHHHHhHHHHHHhhCcC
Q psy15035 2 GQIVFSHDMSRIIQWLLKLSSPQMKKDIVKELLPFTVAMIKSKYSNALVKHMLKSGDENTKNEIIKALQPHVVTLLSHTT 81 (816)
Q Consensus 2 ~~l~~~hd~sRvIQ~~lk~gt~eqR~~I~~EL~~~i~eL~~d~yg~~vVQKlL~~gs~eqr~~Ii~e~~g~v~~L~~h~~ 81 (816)
.+++.+++|++|||++|+++++++|..|++++.|++.+|+.|+||+|+|||++++++++++..|++++++++.+|+.|+|
T Consensus 49 ~~l~~~~~g~~vvq~~l~~~~~~~~~~i~~~~~~~~~~l~~~~~g~~vlqkll~~~~~~~~~~i~~~l~~~~~~L~~d~~ 128 (322)
T cd07920 49 VELMVDPFGNYVIQKLFEHGTEEQRLQLLEKILGHVVRLSLDMYGCRVIQKLLESISEEQISLLVKELRGHVVELVKDQN 128 (322)
T ss_pred HHHhcCccccHHHHHHHHhCCHHHHHHHHHHHHHHHHHHcccchhHHHHHHHHHhcCHHHHHHHHHHHHHCHHHHhhccc
Confidence 46889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chHHHHHHHHhcCCHHHHHHHHHHHhcCcceeeccC-CcchhHHhhcC-ChhHHHHHHHHHHHHHHHhhhhhcccCCcch
Q psy15035 82 ASPVLMYAHDQVASPAQKLAMRQELYGGLYESTGDK-KINCLGDIFEQ-SPEMKTAILSVTKKTILKSLQKTQVTGSALL 159 (816)
Q Consensus 82 G~~VVqk~~~~~at~eQr~~Li~e~yg~~~~l~kd~-~~~~l~~ile~-~pekk~~Il~~l~~~l~~lv~K~~~~~~~iv 159 (816)
|++|||+++ ++++++++..|+++|+|+.+.++.+. |+++++++++. .|+.+..+++.+.+++..++.+ ..|++++
T Consensus 129 gn~Vvq~~l-~~~~~~~~~~i~~~l~~~~~~l~~~~~G~~vvq~~l~~~~~~~~~~l~~~l~~~~~~L~~d--~~Gn~vv 205 (322)
T cd07920 129 GNHVIQKCI-EKFPPEDLQFIIDAFKGNCVALSTHPYGCRVIQRCLEHCSEEQREPLLEEILEHALELVQD--QFGNYVV 205 (322)
T ss_pred ccHHHHHHH-HhCCHHHHHHHHHHHHHHHHHHHcCccccHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhcC--CchhhHH
Confidence 999999999 58899999999999999999999988 99999999997 5689999999999999999988 8999999
Q ss_pred hhhHHHhhhcCCChhhHHHHHHHhCCCCccccccCcChHHHHHHHHhhcCHHHHHHHHHHHH------HHHHHHhhCcCc
Q psy15035 160 HAVLLDFISHSSDSPDLMEVLEMLAPLPLLPFVHSKAGASVAMHIIWNATNKLKKKIVKELK------GHLREVATSEFG 233 (816)
Q Consensus 160 h~vl~ey~~~~~~~~~~~~iie~l~~~~l~~L~~tk~Gs~Vv~~cl~~~~~kdRk~Iik~lk------~~v~~La~d~~G 233 (816)
++++ ...++ +.+..+++.+.++ +..|+++++||+|+++|+.++++++|+.|++++. +++.+|++|+||
T Consensus 206 q~~l----~~~~~-~~~~~i~~~l~~~-~~~l~~~k~Gs~Vve~~l~~~~~~~~~~ii~~l~~~~~~~~~l~~l~~d~~G 279 (322)
T cd07920 206 QHVL----ELGDP-DDTSRIIEKLLGN-IVQLSCHKFASNVVEKCLKHASKEERELIIDEILASGNETSALDTLMKDQYG 279 (322)
T ss_pred HHHH----hcCCH-HHHHHHHHHHHHH-HHHHHcCcchHHHHHHHHHHCCHHHHHHHHHHHhcCCCchhHHHHHhCCCcc
Confidence 8875 34555 8899999999999 9999999999999999999999999999999995 599999999999
Q ss_pred hHHHHHHHccCCchHHHHHHHHHHHHHhHHhHhcChhhHHHHHHh
Q psy15035 234 HLVLVTLLDNVDDTLLLKKALLPELLAEVVPLANHEYGRKVIAHL 278 (816)
Q Consensus 234 ~~Vlq~~l~~~DDt~l~~k~Iv~eL~~~l~~L~~d~yG~~Vl~~L 278 (816)
|||||++|+.++++ .++.|+..|.+++.+|+.++||++|+..|
T Consensus 280 n~Viq~~l~~~~~~--~~~~i~~~l~~~~~~L~~~~~G~~v~~~~ 322 (322)
T cd07920 280 NYVIQTALDVAKEE--QRELLVEAIRPHLPSLRKSPYGKHILAKL 322 (322)
T ss_pred cHHHHHHHHhCCHH--HHHHHHHHHHHHHHHHcCCCcHHHHHHhC
Confidence 99999999999854 58999999999999999999999999864
No 6
>KOG1488|consensus
Probab=100.00 E-value=6.5e-33 Score=310.09 Aligned_cols=259 Identities=16% Similarity=0.237 Sum_probs=242.8
Q ss_pred chHHHHhhhhcCCHHHHHHHHHHHhHHHHHhhcCcchhHHHHHHHhcCCHHHHHHHHHHHhHHHHHHhhCcCchHHHHHH
Q psy15035 10 MSRIIQWLLKLSSPQMKKDIVKELLPFTVAMIKSKYSNALVKHMLKSGDENTKNEIIKALQPHVVTLLSHTTASPVLMYA 89 (816)
Q Consensus 10 ~sRvIQ~~lk~gt~eqR~~I~~EL~~~i~eL~~d~yg~~vVQKlL~~gs~eqr~~Ii~e~~g~v~~L~~h~~G~~VVqk~ 89 (816)
|==|||+++++|+.+||..+...++|++.+||.|.||||||||-|++-+.+++.+++.|+.+++.+++.|.+|+|||||+
T Consensus 227 GNyvIQkffE~gt~~q~~~l~~~~~g~v~~Lsld~ygCRVIQkale~id~~~~~~Li~ELd~~vl~~v~DQngnHViQK~ 306 (503)
T KOG1488|consen 227 GNYVIQKFFEHGTEDQRNLLHSQIKGHVLELSLDMYGCRVIQKALEKVDVSLQIQLIDELDGHLLKCVKDQNGNHVIQKC 306 (503)
T ss_pred cCchhhhhhccCCHHHHHHHHHHHHhhhhhhhcccccchhHHHHHHhcCHHHHHHHHHHHHhhHHHHHhhcccceehhhh
Confidence 44589999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCCHHHHHHHHHHHhc--CcceeeccC-CcchhHHhhcC-ChhHHHHHHHHHHHHHHHhhhhhcccCCcchhhhHHH
Q psy15035 90 HDQVASPAQKLAMRQELYG--GLYESTGDK-KINCLGDIFEQ-SPEMKTAILSVTKKTILKSLQKTQVTGSALLHAVLLD 165 (816)
Q Consensus 90 ~~~~at~eQr~~Li~e~yg--~~~~l~kd~-~~~~l~~ile~-~pekk~~Il~~l~~~l~~lv~K~~~~~~~ivh~vl~e 165 (816)
+ +....+-...|++.|.+ +.+.+..|. |++++|.++|. .++.+..||+++..++..|+++ .+||+++|+++
T Consensus 307 i-e~~p~~~~~Fiv~~f~~~~~~~~ls~~~YGCRVIQr~lE~c~~~~~~~i~~ei~~~~~~L~~d--QygNYVIQHVi-- 381 (503)
T KOG1488|consen 307 I-ETLPPDAWQFIVDFFSGDDNLLELSTHKYGCRVIQRILEHCSEDQKQPLMEEIIRNCDQLAQD--QYGNYVIQHVI-- 381 (503)
T ss_pred h-hccChHHHHHHHHHhcCCCceeEeeccCcccHHHHHHhhcCChHhhhHHHHHHHHHHHHHHhh--hhhhHHHHHHH--
Confidence 9 57788889999999999 899999998 99999999999 5667777999999999999999 99999999886
Q ss_pred hhhcCCChhhHHHHHHHhCCCCccccccCcChHHHHHHHHhhcCHHHHHHHHHHHH-------HHHHHHhhCcCchHHHH
Q psy15035 166 FISHSSDSPDLMEVLEMLAPLPLLPFVHSKAGASVAMHIIWNATNKLKKKIVKELK-------GHLREVATSEFGHLVLV 238 (816)
Q Consensus 166 y~~~~~~~~~~~~iie~l~~~~l~~L~~tk~Gs~Vv~~cl~~~~~kdRk~Iik~lk-------~~v~~La~d~~G~~Vlq 238 (816)
++..+ +++..|++.|.++ ++.|+.+|+.|+||++|+.+|++.+|..|++++- +-+..|+.|+|||||+|
T Consensus 382 --e~g~~-~~~~~I~~~l~~~-ll~~Sq~KfASnVVEk~~~~a~~~~r~~i~~Ei~~~~~~~~~~L~~mmkdQYgNYVVQ 457 (503)
T KOG1488|consen 382 --EHGSP-YRDTIIIKCLLGN-LLSMSQHKFASNVVEKAFLFAPPLLRALIMNEIFPGYVEHPDALDIMMKDQYGNYVVQ 457 (503)
T ss_pred --hcCCh-hhhhhHHHHHHhh-HHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHhcCCccCCccHHHHHHHHhhhhhHHH
Confidence 55777 8899999999999 9999999999999999999999999999999996 35788999999999999
Q ss_pred HHHccCCchHHHHHHHHHHHHHhHHhHhcChhhHHHHHHhh
Q psy15035 239 TLLDNVDDTLLLKKALLPELLAEVVPLANHEYGRKVIAHLV 279 (816)
Q Consensus 239 ~~l~~~DDt~l~~k~Iv~eL~~~l~~L~~d~yG~~Vl~~Ll 279 (816)
+++++++... ++.|...|+.++..|....||+++|..|=
T Consensus 458 kmi~~~~~~q--~~~i~~rI~~h~~~Lrk~syGKhIia~le 496 (503)
T KOG1488|consen 458 KMIDICGPEQ--RELIKSRVKPHASRLRKFSYGKHIIAKLE 496 (503)
T ss_pred HHHHhcCHHH--HHHHHHHHHHHHHHHccCccHHHHHHHHH
Confidence 9999997665 78899999999999999999999998764
No 7
>COG5099 RNA-binding protein of the Puf family, translational repressor [Translation, ribosomal structure and biogenesis]
Probab=99.97 E-value=2.7e-30 Score=304.90 Aligned_cols=294 Identities=18% Similarity=0.253 Sum_probs=237.0
Q ss_pred cccCCchHHHHhhhhcCCHHHHHHHHHHHhHHHHHhhcCcchhHHHHHHHhcCCHHHHHHHHHHHhHHHHHHhhCcCchH
Q psy15035 5 VFSHDMSRIIQWLLKLSSPQMKKDIVKELLPFTVAMIKSKYSNALVKHMLKSGDENTKNEIIKALQPHVVTLLSHTTASP 84 (816)
Q Consensus 5 ~~~hd~sRvIQ~~lk~gt~eqR~~I~~EL~~~i~eL~~d~yg~~vVQKlL~~gs~eqr~~Ii~e~~g~v~~L~~h~~G~~ 84 (816)
+++++|||.||+.|+.-+.++...||.|+.+.+.+||.|.||||||||+|+||+.+||..++..+.++++.|..|+||||
T Consensus 447 ~~Dq~g~r~LQk~Lds~s~~~~~~~~~e~~d~~~eLs~d~fGNyliQK~fe~~s~~q~~~ml~~~~~~~~~ls~~~~Gtr 526 (777)
T COG5099 447 CKDQHGSRFLQKLLDSNSSPEIEVIFNEILDQLVELSSDYFGNYLIQKLFEYGSEIQKSIMLSKSSKHLVSLSVHKYGTR 526 (777)
T ss_pred cCCcHHHHHHHHHhcccchHHHHHHHHHHhhhhHHHHHhhhcchhhHHHHHhccHHHHHHHHHHhhhhHHHhhccccccH
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhcCcceeeccCCcchhHHhhcCChhHHHHHHHHHHHHHHHhhhhhcccCCcchhhhHH
Q psy15035 85 VLMYAHDQVASPAQKLAMRQELYGGLYESTGDKKINCLGDIFEQSPEMKTAILSVTKKTILKSLQKTQVTGSALLHAVLL 164 (816)
Q Consensus 85 VVqk~~~~~at~eQr~~Li~e~yg~~~~l~kd~~~~~l~~ile~~pekk~~Il~~l~~~l~~lv~K~~~~~~~ivh~vl~ 164 (816)
|+|++++...++.|...|+ ++|...+..++.+ ..|++++|+++.
T Consensus 527 v~QK~id~~~t~~qi~~lv----------------------------------~~l~~~~~~li~d--qngNHviqKci~ 570 (777)
T COG5099 527 VLQKAIDIVSTDIQISLLV----------------------------------EELRPYCLQLIKD--QNGNHVIQKCIE 570 (777)
T ss_pred HHHHHHhccCchhhHHHHH----------------------------------HHhhhhhHHHHHh--ccCCHHHHHHHH
Confidence 9999996444444443544 4555555566666 677777666653
Q ss_pred HhhhcCCChhhHHHHHHHhCCCCccccccCcChHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHhhCcCchHHHHHHHccC
Q psy15035 165 DFISHSSDSPDLMEVLEMLAPLPLLPFVHSKAGASVAMHIIWNATNKLKKKIVKELKGHLREVATSEFGHLVLVTLLDNV 244 (816)
Q Consensus 165 ey~~~~~~~~~~~~iie~l~~~~l~~L~~tk~Gs~Vv~~cl~~~~~kdRk~Iik~lk~~v~~La~d~~G~~Vlq~~l~~~ 244 (816)
. .+. +....+++.+.++ +.+++++++||+|+|+|+++++.++.+.++..|..++..|++|+|||||||++++..
T Consensus 571 ~----~~~-~~~~fif~~~~~~-~~~is~~r~Gs~vvq~~le~~~~~~~~~~~~~Ii~~~~~L~~dq~GNyvvq~il~~g 644 (777)
T COG5099 571 K----FNK-EKNQFIFDSINEN-LYDLSTHRYGSRVVQRCLENCNSEDKENLVEEIISNSKYLSQDQYGNYVVQHILDNG 644 (777)
T ss_pred h----cCc-cccchHHHHHHhh-hHhhhccccccHHHHHHHHhccHhHHHHHHHHHHHHHHhhccCCcchhhhhHHhhcC
Confidence 3 444 6677888999999 999999999999999999999999999999999999999999999999999999986
Q ss_pred CchHHHHHHHHHHHHH-hHHhHhcChhhHHHHHHhhccCCCCCcCHHHHHhhccCCccccCCCCHHHHHHHHHHhhchhH
Q psy15035 245 DDTLLLKKALLPELLA-EVVPLANHEYGRKVIAHLVSWCDPGFFHPTCIAHVKSGDEFSTSKKDRDIRNKEILEAVSEPL 323 (816)
Q Consensus 245 DDt~l~~k~Iv~eL~~-~l~~L~~d~yG~~Vl~~Ll~~~~~~~f~~~i~~~L~~~~~~~~sKKd~~~Rr~EL~~~~~~~L 323 (816)
-.+. ++.|+..+.. ++.+|+.++||+.||+.++.-.........|+..+... ...||.
T Consensus 645 ~~~~--k~~i~~~~l~~~v~elS~~kfaSnvVeK~i~~~~~~~~~~ril~~~~~~----~~~~~~--------------- 703 (777)
T COG5099 645 AEPN--KERIIIKLLSKRVVELSTHKFASNVVEKCIKYASDSFKRSRILNELTNR----GIEKPG--------------- 703 (777)
T ss_pred CCcc--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHhcc----cccCCh---------------
Confidence 4443 5677777777 99999999999999999997755333212233322220 001110
Q ss_pred HHHHHhcHHHHHccCChhHHHHHHHhccCCcChHHHHHHHHHHH
Q psy15035 324 LSSIAKDADFWLSTGSVAMVTAVILKNALGPGLKEAFDSVANVI 367 (816)
Q Consensus 324 l~~i~~~~~~ll~d~~g~~vv~~iL~~~~g~~~~~~~~aia~~~ 367 (816)
-+..|+.|.+|+||+|.++..+...++.-+.++|-.++
T Consensus 704 ------~l~~i~~d~y~Nyv~q~~~~~s~~~~~~l~~~~i~~~~ 741 (777)
T COG5099 704 ------FLMLILDDQYANYVIQYLLDVSPEIQRSLLARAIKKVI 741 (777)
T ss_pred ------HHHHHHHhhhcchHHHHHHhhCchhhHHHHHHHHHHHH
Confidence 14567788999999999999988765555555554433
No 8
>KOG2049|consensus
Probab=99.97 E-value=1.9e-30 Score=292.77 Aligned_cols=276 Identities=16% Similarity=0.189 Sum_probs=235.9
Q ss_pred ccccccCCchHHHHhhhhcCCHHHHHHHHHHHhHHHHHhhcCcchhHHHHHHHhcCCHHHHHHHHHHHhH---HHHHHhh
Q psy15035 2 GQIVFSHDMSRIIQWLLKLSSPQMKKDIVKELLPFTVAMIKSKYSNALVKHMLKSGDENTKNEIIKALQP---HVVTLLS 78 (816)
Q Consensus 2 ~~l~~~hd~sRvIQ~~lk~gt~eqR~~I~~EL~~~i~eL~~d~yg~~vVQKlL~~gs~eqr~~Ii~e~~g---~v~~L~~ 78 (816)
.-+|++++|||++|..+..++...-..||.|+..++.+||.|+||+|+||||++.|+++||..|+..+.. .+++++.
T Consensus 220 ~~~akd~~gc~~lq~~~~~~~~~~~~~if~~~~~~~~~Lm~d~fGny~vqkl~~~~~~eq~~~i~~~lts~p~~fv~i~~ 299 (536)
T KOG2049|consen 220 NLIAKDQHGCRLLQKLLSEGTKVSILKIFLETIQDVPELMEDPFGNYLVQKLLEVCDEEQLTKIVSLLTSDPRLFVEICT 299 (536)
T ss_pred hhhcccccCCcccccCcccCccccHHHHHHHHHHHHHHHHhccchhHHHHHHHHhhCHHHHHHHHHHHhcCccceeEeee
Confidence 3478999999999999999999999999999999999999999999999999999999999999998876 6999999
Q ss_pred CcCchHHHHHHHHhcCCHHHHHHHHHHHhcCcceeeccCCcchhHHhhcCChhHHHHHHHHHHHHHHHhhhhhcccCCcc
Q psy15035 79 HTTASPVLMYAHDQVASPAQKLAMRQELYGGLYESTGDKKINCLGDIFEQSPEMKTAILSVTKKTILKSLQKTQVTGSAL 158 (816)
Q Consensus 79 h~~G~~VVqk~~~~~at~eQr~~Li~e~yg~~~~l~kd~~~~~l~~ile~~pekk~~Il~~l~~~l~~lv~K~~~~~~~i 158 (816)
++||+++||++++...+.+|...++..+ ......++.+ .+|+++
T Consensus 300 N~~GTr~iQkl~~~~~~~dqI~~~~~ai----------------------------------~~~fl~L~~D--~~g~~V 343 (536)
T KOG2049|consen 300 NMYGTRAVQKLLGKSDSVDQISLFLDAI----------------------------------KPNFLHLIKD--KNGNHV 343 (536)
T ss_pred cCchhHHHHHHHhccccHHHHHHHHHHH----------------------------------HhhhHHhhhh--cchhHH
Confidence 9999999999998777777666655554 4444445555 778888
Q ss_pred hhhhHHHhhhcCCChhhHHHHHHHhCCCCccccccCcChHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHhhCcCchHHHH
Q psy15035 159 LHAVLLDFISHSSDSPDLMEVLEMLAPLPLLPFVHSKAGASVAMHIIWNATNKLKKKIVKELKGHLREVATSEFGHLVLV 238 (816)
Q Consensus 159 vh~vl~ey~~~~~~~~~~~~iie~l~~~~l~~L~~tk~Gs~Vv~~cl~~~~~kdRk~Iik~lk~~v~~La~d~~G~~Vlq 238 (816)
++++|.. .++ ++...+++.+... +.++|.+++||+|+++||.++...+|..++.++-.+...|+.|+|||||+|
T Consensus 344 iq~cl~~----f~~-~~~~~l~e~i~~~-c~~iA~~~hGCcvLq~cl~~~~~~~rd~Lv~~i~~naL~Ls~d~~GNyvVQ 417 (536)
T KOG2049|consen 344 IQRCLRV----FSK-EKNEFLYEAILRY-CLDLATDQHGCCVLQKCLDYSRGEQRDRLVEEISRNALLLSNDPYGNYVVQ 417 (536)
T ss_pred HHHHHHh----cCc-hhhhHHHHHHHHH-HHHHHHhccccchhHHHhcchhHHHHHHHHHHHHHHhHhhhcCccccchhh
Confidence 8777644 344 7778999999999 999999999999999999999999999999999999999999999999999
Q ss_pred HHHccCCchHHHHHHHHHHHHHhHHhHhcChhhHHHHHHhhccCCCCCcCHHHHHhhccCCccccCCCCHHHHHHHHHHh
Q psy15035 239 TLLDNVDDTLLLKKALLPELLAEVVPLANHEYGRKVIAHLVSWCDPGFFHPTCIAHVKSGDEFSTSKKDRDIRNKEILEA 318 (816)
Q Consensus 239 ~~l~~~DDt~l~~k~Iv~eL~~~l~~L~~d~yG~~Vl~~Ll~~~~~~~f~~~i~~~L~~~~~~~~sKKd~~~Rr~EL~~~ 318 (816)
++++.=|-. . ...|+..+.++..+|+..|||++|++.||..+.... .+.+.++|.
T Consensus 418 yvl~L~~~~-~-t~~i~~~L~g~~veLS~qKfgS~vVEk~L~~~~~~~-~~iV~ell~---------------------- 472 (536)
T KOG2049|consen 418 YVLELNDPS-C-TVNIAEKLRGHYVELSFQKFGSHVVEKLLKVRESSR-AQIVLELLS---------------------- 472 (536)
T ss_pred hhhhhcCcc-h-HHHHHHhhhhHHHHHHHHhhccHHHHHHHhcCcchh-hHHHHHHHc----------------------
Confidence 999864322 2 346899999999999999999999999998755322 122222222
Q ss_pred hchhHHHHHHhcHHHHHccCChhHHHHHHHhccCC
Q psy15035 319 VSEPLLSSIAKDADFWLSTGSVAMVTAVILKNALG 353 (816)
Q Consensus 319 ~~~~Ll~~i~~~~~~ll~d~~g~~vv~~iL~~~~g 353 (816)
. +++..|++|+||+||||.+|..+.+
T Consensus 473 -------~--~~~~~Ll~D~ygNyViq~AL~vtk~ 498 (536)
T KOG2049|consen 473 -------C--DELDRLLRDPYGNYVIQTALRVTKV 498 (536)
T ss_pred -------c--ccHHHHhhCccchHHHHHHHHHhhh
Confidence 1 5788999999999999999999987
No 9
>PF08144 CPL: CPL (NUC119) domain; InterPro: IPR012959 This C-terminal domain is found in Penguin-like proteins (CPL) and is associated with Pumilio like repeats [].; GO: 0003723 RNA binding
Probab=99.96 E-value=2.9e-30 Score=250.40 Aligned_cols=145 Identities=37% Similarity=0.504 Sum_probs=128.5
Q ss_pred hcChhhHHHHHHhhccCCCCCcCHHHHHhhccCCccccCCCCHHHHHHHHHHhhchhHHHHHHhcHHHHHccCChhHHHH
Q psy15035 266 ANHEYGRKVIAHLVSWCDPGFFHPTCIAHVKSGDEFSTSKKDRDIRNKEILEAVSEPLLSSIAKDADFWLSTGSVAMVTA 345 (816)
Q Consensus 266 ~~d~yG~~Vl~~Ll~~~~~~~f~~~i~~~L~~~~~~~~sKKd~~~Rr~EL~~~~~~~Ll~~i~~~~~~ll~d~~g~~vv~ 345 (816)
++|+|||+||+|||.|+|++||+|.+++.|.+++.+.|||||+++||+||+++++|+|+++|.+|+++||++++||+||.
T Consensus 1 i~dk~gRr~llYLl~~~d~~~f~p~~i~~L~~~d~~~tSKKd~~~Rr~ELl~~~sp~Ll~~i~~~~~~ll~~~~g~~~i~ 80 (148)
T PF08144_consen 1 INDKYGRRVLLYLLSPRDPRYFSPEIIKLLKEGDRNATSKKDPEVRRKELLEAISPPLLEAIAENAEELLSSSFGCQFIT 80 (148)
T ss_pred CCCccCceeeeeeccCCCcccCCHHHHHHHhhhcccccccCCHHHHHHHHHHHhhHHHHHHHHHhHHHHHhcCcccHHHH
Confidence 37999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhccCCcChHHHHHHHHHHHhhhccccchhhhhccccCchhhhhhhhhhccCCCccccccCCCCCCCcccCCCCcccc
Q psy15035 346 VILKNALGPGLKEAFDSVANVIVDLERRVPLELKKDFASGNKNKQKKAAQQNKGGEKNQTAQGKKGTEGKKEAGNEKEEE 425 (816)
Q Consensus 346 ~iL~~~~g~~~~~~~~aia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 425 (816)
+||.++.|| ..++++||+++++.+- .+++.+++
T Consensus 81 eiL~~~~gd-k~~a~~Aia~~~~~~~--------------------------------------------~~~~~~~e-- 113 (148)
T PF08144_consen 81 EILLSATGD-KSAALEAIASLAAEPL--------------------------------------------FPGDIDEE-- 113 (148)
T ss_pred HHHhccCcc-HHHHHHHHHHHHhhcc--------------------------------------------CCCCCcCc--
Confidence 999999999 6899999999885420 02334445
Q ss_pred CCCcccCchhHHHHHHHHhcCccccccc-CcchH
Q psy15035 426 TTPFIEHPGFHTVLKKLLQHDRDNVAKE-LPTLS 458 (816)
Q Consensus 426 ~~~~~~~p~~~r~lk~Li~~~~~~~~~~-~~~f~ 458 (816)
.|+++||++||+||+|||+|++...++ +..|+
T Consensus 114 -~H~i~~p~~~r~lK~Liq~~~~~~~~~~~~~~~ 146 (148)
T PF08144_consen 114 -YHLIEHPFGHRMLKKLIQGDKKMKENNKEKKFV 146 (148)
T ss_pred -cchhcCchHHHHHHHHHHCCCcccccCCcceee
Confidence 899999999999999999999654443 44554
No 10
>KOG2050|consensus
Probab=99.92 E-value=9.8e-24 Score=233.99 Aligned_cols=289 Identities=16% Similarity=0.209 Sum_probs=238.4
Q ss_pred CCHHHHHHHHHHH----hHHHHHhhcCcchhHHHHHHHhcCCHHHHHHHHHHHhHHHHHHhhCcCchHHHHHHHHhcCCH
Q psy15035 21 SSPQMKKDIVKEL----LPFTVAMIKSKYSNALVKHMLKSGDENTKNEIIKALQPHVVTLLSHTTASPVLMYAHDQVASP 96 (816)
Q Consensus 21 gt~eqR~~I~~EL----~~~i~eL~~d~yg~~vVQKlL~~gs~eqr~~Ii~e~~g~v~~L~~h~~G~~VVqk~~~~~at~ 96 (816)
...+.|..++.|| ++++.+|+..+...||||.|++||+++||..|++++.|.+++|+.++||-+.||+++ .|+++
T Consensus 146 ~~ke~R~klv~el~~likg~i~~lv~aHDtSRViQt~Vky~s~~~r~~if~eL~p~~v~l~kskY~k~~v~KmL-kyGsk 224 (652)
T KOG2050|consen 146 TPKEERDKLVSELYKLIKGKISKLVFAHDTSRVIQTCVKYGSEAQREQIFEELLPFFVELAKSKYAKFFVQKML-KYGSK 224 (652)
T ss_pred CcHHHHHHHHHHHHHHHhhhHHHHHHHhhhHHHHHHHHHhcCHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHHH-hcCCH
Confidence 4569999998886 679999999999999999999999999999999999999999999999999999999 69999
Q ss_pred HHHHHHHHHHhcCcceeeccC-CcchhHHhhcC--ChhHHHHHHHHHHHHHHHhhhhhcccCCcchhhhHHHhhhcCCCh
Q psy15035 97 AQKLAMRQELYGGLYESTGDK-KINCLGDIFEQ--SPEMKTAILSVTKKTILKSLQKTQVTGSALLHAVLLDFISHSSDS 173 (816)
Q Consensus 97 eQr~~Li~e~yg~~~~l~kd~-~~~~l~~ile~--~pekk~~Il~~l~~~l~~lv~K~~~~~~~ivh~vl~ey~~~~~~~ 173 (816)
.|++.||.+|||++..|.+|. +..++...+.. ++++|..+++++++....++.. ...-+ +.+++. -.+
T Consensus 225 ~q~a~iI~sl~Ghv~kLlRH~eaa~Vve~ay~~~A~l~Qr~~li~EfYG~efqlfK~--sn~~T-l~kil~-----~~p- 295 (652)
T KOG2050|consen 225 AQKAKIINSLRGHVVKLLRHREAAYVVEYAYNDFATLEQRQYLIQEFYGDEFQLFKD--SNDKT-LDKILA-----EAP- 295 (652)
T ss_pred HHHHHHHHHHhhhHHHHHhhhHHHHHHHHHHHhhccHHHHHHHHHHHhhHHHHHHhc--cCccc-HHHHHH-----hCh-
Confidence 999999999999999999998 66777777776 7899999999999999998866 22222 223322 233
Q ss_pred hhHHHHHHHhCCCCccccccCcC----hH-HHHHHHHhhcCHHHHHHHHHHHHHHHHHHhhCcCchHHHHHHHccCCchH
Q psy15035 174 PDLMEVLEMLAPLPLLPFVHSKA----GA-SVAMHIIWNATNKLKKKIVKELKGHLREVATSEFGHLVLVTLLDNVDDTL 248 (816)
Q Consensus 174 ~~~~~iie~l~~~~l~~L~~tk~----Gs-~Vv~~cl~~~~~kdRk~Iik~lk~~v~~La~d~~G~~Vlq~~l~~~DDt~ 248 (816)
+.+..|+..|... +..++.... =. .|+...+.+++++.+..++..++..+.+|.+.+.|..|.+.|+.. .|.
T Consensus 296 ekk~~I~~~l~~~-I~~v~eKg~v~~tivHk~mlEy~~~ade~e~~e~l~ll~elv~e~vHT~dGS~vAm~li~~--a~a 372 (652)
T KOG2050|consen 296 EKKASILRHLKAI-ITPVAEKGSVDHTIVHKLMLEYLTIADEEEKSELLELLKELVPEMVHTRDGSRVAMKLIWH--ATA 372 (652)
T ss_pred HhHHHHHHHHHHH-hHHHhhcchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHhh--CCH
Confidence 6666777666655 444332211 11 356668899999999999999999999999999999999999955 677
Q ss_pred HHHHHHHHHHHHhHHhHhcChhhHHHHHHhhccCCCCCcCHHHHHhhccCCccccCCCCHHHHHHHHHHhhchhHHHHHH
Q psy15035 249 LLKKALLPELLAEVVPLANHEYGRKVIAHLVSWCDPGFFHPTCIAHVKSGDEFSTSKKDRDIRNKEILEAVSEPLLSSIA 328 (816)
Q Consensus 249 l~~k~Iv~eL~~~l~~L~~d~yG~~Vl~~Ll~~~~~~~f~~~i~~~L~~~~~~~~sKKd~~~Rr~EL~~~~~~~Ll~~i~ 328 (816)
.-||.|++.|.+++..+++++||+.||..+|++.|.+.+... .+..-+.
T Consensus 373 KeRK~IiK~~K~h~~K~A~~~yGh~vlia~ldc~DDT~l~kk-------------------------------~i~~e~~ 421 (652)
T KOG2050|consen 373 KERKLIIKNMKEHVEKIANDEYGHLVLIALLDCTDDTKLLKK-------------------------------LIYDELK 421 (652)
T ss_pred HHHHHHHHHHHHHHHHHHhhccCceehhhhhcccchHHHHHH-------------------------------HHHHHHH
Confidence 789999999999999999999999999999999764332111 1223356
Q ss_pred hcHHHHHccCChhHHHHHHHhccCC
Q psy15035 329 KDADFWLSTGSVAMVTAVILKNALG 353 (816)
Q Consensus 329 ~~~~~ll~d~~g~~vv~~iL~~~~g 353 (816)
+++..++.|+||.-|++.+|.-..|
T Consensus 422 ~el~~li~Dk~Grrv~lyll~p~D~ 446 (652)
T KOG2050|consen 422 SELKSLISDKYGRRVILYLLAPRDG 446 (652)
T ss_pred HHHHHHhccchhhhhhhhhccCCcc
Confidence 7889999999999999999976434
No 11
>KOG2049|consensus
Probab=99.89 E-value=5.3e-23 Score=232.73 Aligned_cols=265 Identities=16% Similarity=0.188 Sum_probs=232.2
Q ss_pred cccccCCchHHHHhhhhcCCHHHHHHHHHHHhH---HHHHhhcCcchhHHHHHHHhcC-CHHHHHHHHHHHhHHHHHHhh
Q psy15035 3 QIVFSHDMSRIIQWLLKLSSPQMKKDIVKELLP---FTVAMIKSKYSNALVKHMLKSG-DENTKNEIIKALQPHVVTLLS 78 (816)
Q Consensus 3 ~l~~~hd~sRvIQ~~lk~gt~eqR~~I~~EL~~---~i~eL~~d~yg~~vVQKlL~~g-s~eqr~~Ii~e~~g~v~~L~~ 78 (816)
++-.++.|.=++|+++..++.+||.+|..-|.. .++.++.+.||.+.||||++-. +.+|...++..+...+..|++
T Consensus 257 ~Lm~d~fGny~vqkl~~~~~~eq~~~i~~~lts~p~~fv~i~~N~~GTr~iQkl~~~~~~~dqI~~~~~ai~~~fl~L~~ 336 (536)
T KOG2049|consen 257 ELMEDPFGNYLVQKLLEVCDEEQLTKIVSLLTSDPRLFVEICTNMYGTRAVQKLLGKSDSVDQISLFLDAIKPNFLHLIK 336 (536)
T ss_pred HHHhccchhHHHHHHHHhhCHHHHHHHHHHHhcCccceeEeeecCchhHHHHHHHhccccHHHHHHHHHHHHhhhHHhhh
Confidence 455677888899999999999999999999876 6999999999999999999964 788999999999999999999
Q ss_pred CcCchHHHHHHHHhcCCHHHHHHHHHHHhcCcceeeccC-CcchhHHhhcC-ChhHHHHHHHHHHHHHHHhhhhhcccCC
Q psy15035 79 HTTASPVLMYAHDQVASPAQKLAMRQELYGGLYESTGDK-KINCLGDIFEQ-SPEMKTAILSVTKKTILKSLQKTQVTGS 156 (816)
Q Consensus 79 h~~G~~VVqk~~~~~at~eQr~~Li~e~yg~~~~l~kd~-~~~~l~~ile~-~pekk~~Il~~l~~~l~~lv~K~~~~~~ 156 (816)
+.||+||||++++ .-++++...|.+..+-....+..|. |+.+|+++|.. ..+.|+.+++++..+...+.++ ..|+
T Consensus 337 D~~g~~Viq~cl~-~f~~~~~~~l~e~i~~~c~~iA~~~hGCcvLq~cl~~~~~~~rd~Lv~~i~~naL~Ls~d--~~GN 413 (536)
T KOG2049|consen 337 DKNGNHVIQRCLR-VFSKEKNEFLYEAILRYCLDLATDQHGCCVLQKCLDYSRGEQRDRLVEEISRNALLLSND--PYGN 413 (536)
T ss_pred hcchhHHHHHHHH-hcCchhhhHHHHHHHHHHHHHHHhccccchhHHHhcchhHHHHHHHHHHHHHHhHhhhcC--cccc
Confidence 9999999999995 7788999999998888888888877 99999999998 5689999999999999999999 8999
Q ss_pred cchhhhHHHhhhcCCChhhHHHHHHHhCCCCccccccCcChHHHHHHHHhhcCHHHHHHHHHHHHH--HHHHHhhCcCch
Q psy15035 157 ALLHAVLLDFISHSSDSPDLMEVLEMLAPLPLLPFVHSKAGASVAMHIIWNATNKLKKKIVKELKG--HLREVATSEFGH 234 (816)
Q Consensus 157 ~ivh~vl~ey~~~~~~~~~~~~iie~l~~~~l~~L~~tk~Gs~Vv~~cl~~~~~kdRk~Iik~lk~--~v~~La~d~~G~ 234 (816)
+++|.++..... .....|++.|.++ +++|+..|+||+||++||.++.+. +..|+.++.. ++..|+.|+|||
T Consensus 414 yvVQyvl~L~~~-----~~t~~i~~~L~g~-~veLS~qKfgS~vVEk~L~~~~~~-~~~iV~ell~~~~~~~Ll~D~ygN 486 (536)
T KOG2049|consen 414 YVVQYVLELNDP-----SCTVNIAEKLRGH-YVELSFQKFGSHVVEKLLKVRESS-RAQIVLELLSCDELDRLLRDPYGN 486 (536)
T ss_pred chhhhhhhhcCc-----chHHHHHHhhhhH-HHHHHHHhhccHHHHHHHhcCcch-hhHHHHHHHccccHHHHhhCccch
Confidence 999988755433 4456999999999 999999999999999999988764 4778888876 999999999999
Q ss_pred HHHHHHHccCCc--hHHHHHHHHHHHHHhHHhHhcChhhHHHHHH
Q psy15035 235 LVLVTLLDNVDD--TLLLKKALLPELLAEVVPLANHEYGRKVIAH 277 (816)
Q Consensus 235 ~Vlq~~l~~~DD--t~l~~k~Iv~eL~~~l~~L~~d~yG~~Vl~~ 277 (816)
||||++|.+... +.-.+..++..+...+..|...+||+++...
T Consensus 487 yViq~AL~vtk~~~~~~~~~~lv~~~~~~~~~lr~~p~~~~~~~~ 531 (536)
T KOG2049|consen 487 YVIQTALRVTKVKLREDLFGLLVQKLMPRIRLLRNNPGGNIALIK 531 (536)
T ss_pred HHHHHHHHHhhhcccchhhHHHHHHHhhhhHHhhcCcccceeeeh
Confidence 999999998753 0124667888888999999999999987643
No 12
>COG5099 RNA-binding protein of the Puf family, translational repressor [Translation, ribosomal structure and biogenesis]
Probab=99.88 E-value=6.1e-22 Score=234.38 Aligned_cols=259 Identities=15% Similarity=0.227 Sum_probs=176.7
Q ss_pred CCchHHHHhhhhcCCHHHHHHHHHHHhHHHHHhhcCcchhHHHHHHHhcCC-HHHHHHHHHHHhHHHHHHhhCcCchHHH
Q psy15035 8 HDMSRIIQWLLKLSSPQMKKDIVKELLPFTVAMIKSKYSNALVKHMLKSGD-ENTKNEIIKALQPHVVTLLSHTTASPVL 86 (816)
Q Consensus 8 hd~sRvIQ~~lk~gt~eqR~~I~~EL~~~i~eL~~d~yg~~vVQKlL~~gs-~eqr~~Ii~e~~g~v~~L~~h~~G~~VV 86 (816)
--|==+||++++||+.+||.....-+.+++..|+.++||+|++||++++.+ ++|...|++++.+.+..|+++.+|+|||
T Consensus 486 ~fGNyliQK~fe~~s~~q~~~ml~~~~~~~~~ls~~~~Gtrv~QK~id~~~t~~qi~~lv~~l~~~~~~li~dqngNHvi 565 (777)
T COG5099 486 YFGNYLIQKLFEYGSEIQKSIMLSKSSKHLVSLSVHKYGTRVLQKAIDIVSTDIQISLLVEELRPYCLQLIKDQNGNHVI 565 (777)
T ss_pred hhcchhhHHHHHhccHHHHHHHHHHhhhhHHHhhccccccHHHHHHHhccCchhhHHHHHHHhhhhhHHHHHhccCCHHH
Confidence 335458999999999999999999999999999999999999999999985 4455599999999999999999999999
Q ss_pred HHHHHhcCCHHHHHHHHHHHhcCcceeeccC-CcchhHHhhcC-ChhHHHHHHHHHHHHHHHhhhhhcccCCcchhhhHH
Q psy15035 87 MYAHDQVASPAQKLAMRQELYGGLYESTGDK-KINCLGDIFEQ-SPEMKTAILSVTKKTILKSLQKTQVTGSALLHAVLL 164 (816)
Q Consensus 87 qk~~~~~at~eQr~~Li~e~yg~~~~l~kd~-~~~~l~~ile~-~pekk~~Il~~l~~~l~~lv~K~~~~~~~ivh~vl~ 164 (816)
|++++ -...+-...|++.+-.+.+.+..+. |++++|.++|. ..+.+..+++++..++..++++ ..|++++++++
T Consensus 566 qKci~-~~~~~~~~fif~~~~~~~~~is~~r~Gs~vvq~~le~~~~~~~~~~~~~Ii~~~~~L~~d--q~GNyvvq~il- 641 (777)
T COG5099 566 QKCIE-KFNKEKNQFIFDSINENLYDLSTHRYGSRVVQRCLENCNSEDKENLVEEIISNSKYLSQD--QYGNYVVQHIL- 641 (777)
T ss_pred HHHHH-hcCccccchHHHHHHhhhHhhhccccccHHHHHHHHhccHhHHHHHHHHHHHHHHhhccC--CcchhhhhHHh-
Confidence 99995 4455555666666666666555554 66666666666 3444556666666666666665 66666665554
Q ss_pred HhhhcCCChhhHHHHHHHhCC-CCccccccCcChHHHHHHHHhhcCHHH-HHHHHHHHHH-------HHHHHhhCcCchH
Q psy15035 165 DFISHSSDSPDLMEVLEMLAP-LPLLPFVHSKAGASVAMHIIWNATNKL-KKKIVKELKG-------HLREVATSEFGHL 235 (816)
Q Consensus 165 ey~~~~~~~~~~~~iie~l~~-~~l~~L~~tk~Gs~Vv~~cl~~~~~kd-Rk~Iik~lk~-------~v~~La~d~~G~~ 235 (816)
+.+.. ..+..++..+.. . +++|+.+|+|+.||++||.++.... |..|++.+.. -+..|+.|.||||
T Consensus 642 ---~~g~~-~~k~~i~~~~l~~~-v~elS~~kfaSnvVeK~i~~~~~~~~~~ril~~~~~~~~~~~~~l~~i~~d~y~Ny 716 (777)
T COG5099 642 ---DNGAE-PNKERIIIKLLSKR-VVELSTHKFASNVVEKCIKYASDSFKRSRILNELTNRGIEKPGFLMLILDDQYANY 716 (777)
T ss_pred ---hcCCC-cchhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHhcccccCChHHHHHHHhhhcch
Confidence 23333 444444444444 5 6666666666666666666666555 3666666642 2556666666666
Q ss_pred HHHHHHccCCchHHHHHHHHHHHHHhHHhHhcChhhHHHHHH
Q psy15035 236 VLVTLLDNVDDTLLLKKALLPELLAEVVPLANHEYGRKVIAH 277 (816)
Q Consensus 236 Vlq~~l~~~DDt~l~~k~Iv~eL~~~l~~L~~d~yG~~Vl~~ 277 (816)
|+|++++..... -+..+...+...+..|...+||++++.-
T Consensus 717 v~q~~~~~s~~~--~~~l~~~~i~~~~~~l~~s~~g~~i~~~ 756 (777)
T COG5099 717 VIQYLLDVSPEI--QRSLLARAIKKVIPSLKKSMYGQHILAL 756 (777)
T ss_pred HHHHHHhhCchh--hHHHHHHHHHHHHHHHhcCCccHHHHHH
Confidence 666666655432 2333444445555566666666665443
No 13
>KOG0896|consensus
Probab=99.85 E-value=1.9e-22 Score=184.99 Aligned_cols=79 Identities=54% Similarity=0.868 Sum_probs=75.6
Q ss_pred ecchhhhHHHHHHHhhhcCCCCCcceeccccCCCCcccceEEEEeCCCCCCCCCcchhhhhchhhhhhhhhhhheeccCC
Q psy15035 521 LIVPRNFRLLEELEHGQRGVGDGTISWGLENDDDMTLTHWTGMIIGPPRTSTTGHIMDTIIGYIMSVLNEILHLFWISRK 600 (816)
Q Consensus 521 l~vp~~~~l~~el~~~~~~~~~~~~s~gl~~~~d~~l~~w~~~i~GP~~t~~e~~~~~l~i~f~~~yp~~~p~~~~~~~~ 600 (816)
++|||||||++||++++||.+|+++|||+++++|++|+.|+|+|+|||+|.|||++|+++|.|.++||+.||.++ |..+
T Consensus 2 ~~vPrnfrlleele~g~kg~g~~~~s~gl~d~~dmtl~rWtg~IiGPprT~yEnRiysLKI~Cgp~YPe~PP~vr-f~tk 80 (138)
T KOG0896|consen 2 VKVPRNFRLLEELEEGEKGIGDGTVSWGLEDDDDMTLTRWTGTIIGPPRTMYENRIYSLKIECGPKYPELPPTVR-FGTK 80 (138)
T ss_pred CccccchhhhhhhccccccccCceeeccccCCCcceEeeeccceeCCCCcccccceeeEEEecCCCCCCCCceeE-EEEE
Confidence 469999999999999999999999999999999999999999999999999999999999999999999999996 6554
No 14
>cd01793 Fubi Fubi ubiquitin-like protein. Fubi is a ubiquitin-like protein encoded by the fau gene which has an N-terminal ubiquitin-like domain (also referred to as FUBI) fused to the ribosomal protein S30. Fubi is thought to be a tumor suppressor protein and the FUBI domain may act as a substitute or an inhibitor of ubiquitin or one of ubiquitin's close relatives UCRP, FAT10, and Nedd8.
Probab=99.70 E-value=4.2e-17 Score=140.54 Aligned_cols=73 Identities=18% Similarity=0.373 Sum_probs=70.5
Q ss_pred eEEEEEecCCceEEEEcCCCCcHHHHHHHHhhhhCCCCCCeEEEECCeecCCCccccccCCCCCCEEEEe-eCCCC
Q psy15035 605 LMINIKSNTGNTVCVNLDPASDIRNVKEMIAPKLGLKYEEVKIIFAGKELEDTTIISECDLGQQSILHAV-KSSPE 679 (816)
Q Consensus 605 M~V~Vk~~~g~t~~v~V~~~~TV~~LK~~I~~~~Gip~~~qrLif~Gk~L~d~~tL~~~~I~~~stl~lv-r~~gg 679 (816)
|+|+||+. ++++++|++++||++||++|++++|+|+++|+|+|+|++|+|+.||++|+|++++|||++ |++||
T Consensus 1 mqi~vk~~--~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~Li~~Gk~L~D~~tL~~~~i~~~~tl~l~~~l~GG 74 (74)
T cd01793 1 MQLFVRAQ--NTHTLEVTGQETVSDIKAHVAGLEGIDVEDQVLLLAGVPLEDDATLGQCGVEELCTLEVAGRLLGG 74 (74)
T ss_pred CEEEEECC--CEEEEEECCcCcHHHHHHHHHhhhCCCHHHEEEEECCeECCCCCCHHHcCCCCCCEEEEEEecCCC
Confidence 89999984 789999999999999999999999999999999999999999999999999999999999 99986
No 15
>KOG0004|consensus
Probab=99.68 E-value=3.6e-17 Score=154.97 Aligned_cols=78 Identities=33% Similarity=0.538 Sum_probs=75.5
Q ss_pred eEEEEEecCCceEEEEcCCCCcHHHHHHHHhhhhCCCCCCeEEEECCeecCCCccccccCCCCCCEEEEe-eCCCCCCc
Q psy15035 605 LMINIKSNTGNTVCVNLDPASDIRNVKEMIAPKLGLKYEEVKIIFAGKELEDTTIISECDLGQQSILHAV-KSSPENNK 682 (816)
Q Consensus 605 M~V~Vk~~~g~t~~v~V~~~~TV~~LK~~I~~~~Gip~~~qrLif~Gk~L~d~~tL~~~~I~~~stl~lv-r~~gg~~~ 682 (816)
|+|||++++|++++.+|++++||..+|.+|+..+|||+++|||||+|++|+|+++|+||+|+..+|+|++ |++||.++
T Consensus 1 m~ifVk~l~~kti~~eve~~~ti~~~Kakiq~~egIp~dqqrlifag~qLedgrtlSDY~Iqkestl~l~l~l~Gg~kk 79 (156)
T KOG0004|consen 1 MQIFVKTLTGKTITLEVEANDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGAKK 79 (156)
T ss_pred CccchhhccccceeeeecccccHHHHHHhhhcccCCCchhhhhhhhhcccccCCccccccccccceEEEEEEecCCccc
Confidence 7899999999999999999999999999999999999999999999999999999999999999999999 99999544
No 16
>cd01802 AN1_N ubiquitin-like domain of AN1. AN1 (also known as ANUBL1 and RSD-7) is ubiquitin-like protein with a testis-specific expression in rats that has an N-terminal ubiquitin-like domain and a C-terminal zinc-binding domain. Unlike ubiquitin polyproteins and most ubiquitin fusion proteins, the N-terminal ubiquitin-like domain of An1 does not undergo proteolytic processing. The function of AN1 is unknown.
Probab=99.67 E-value=1.6e-16 Score=145.30 Aligned_cols=79 Identities=20% Similarity=0.286 Sum_probs=76.4
Q ss_pred CCCceEEEEEecCCceEEEEcCCCCcHHHHHHHHhhhhCCCCCCeEEEECCeecCCCccccccCCCCCCEEEEe-eCCCC
Q psy15035 601 PDNTLMINIKSNTGNTVCVNLDPASDIRNVKEMIAPKLGLKYEEVKIIFAGKELEDTTIISECDLGQQSILHAV-KSSPE 679 (816)
Q Consensus 601 ~~~~M~V~Vk~~~g~t~~v~V~~~~TV~~LK~~I~~~~Gip~~~qrLif~Gk~L~d~~tL~~~~I~~~stl~lv-r~~gg 679 (816)
.+.+|+|+||+..|++++++|++++||.+||++|+++.|+|+++|+|+|+|+.|+|+.+|++|+|+++++||++ |++||
T Consensus 24 ~~~~M~I~Vk~l~G~~~~leV~~~~TV~~lK~kI~~~~gip~~~QrLi~~Gk~L~D~~tL~dy~I~~~stL~l~~~l~GG 103 (103)
T cd01802 24 FYDTMELFIETLTGTCFELRVSPFETVISVKAKIQRLEGIPVAQQHLIWNNMELEDEYCLNDYNISEGCTLKLVLAMRGG 103 (103)
T ss_pred cCCCEEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHhCCChHHEEEEECCEECCCCCcHHHcCCCCCCEEEEEEecCCC
Confidence 56689999999999999999999999999999999999999999999999999999999999999999999999 98886
No 17
>cd01807 GDX_N ubiquitin-like domain of GDX. GDX contains an N-terminal ubiquitin-like domain as well as an uncharacterized c-terminal domain. The function of GDX is unknown.
Probab=99.67 E-value=1.4e-16 Score=137.34 Aligned_cols=72 Identities=19% Similarity=0.473 Sum_probs=70.2
Q ss_pred eEEEEEecCCceEEEEcCCCCcHHHHHHHHhhhhCCCCCCeEEEECCeecCCCccccccCCCCCCEEEEe-eC
Q psy15035 605 LMINIKSNTGNTVCVNLDPASDIRNVKEMIAPKLGLKYEEVKIIFAGKELEDTTIISECDLGQQSILHAV-KS 676 (816)
Q Consensus 605 M~V~Vk~~~g~t~~v~V~~~~TV~~LK~~I~~~~Gip~~~qrLif~Gk~L~d~~tL~~~~I~~~stl~lv-r~ 676 (816)
|+|+||+.+|++++++|++++||++||+.|++++|+|+++|+|+|+|++|+|+.+|++|||+++++||++ |.
T Consensus 1 m~i~vk~~~G~~~~l~v~~~~tV~~lK~~i~~~~gi~~~~q~L~~~G~~L~d~~~L~~~~i~~~~~l~l~~~~ 73 (74)
T cd01807 1 MFLTVKLLQGRECSLQVSEKESVSTLKKLVSEHLNVPEEQQRLLFKGKALADDKRLSDYSIGPNAKLNLVVRP 73 (74)
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCCHHHeEEEECCEECCCCCCHHHCCCCCCCEEEEEEcC
Confidence 8999999999999999999999999999999999999999999999999999999999999999999999 63
No 18
>PTZ00044 ubiquitin; Provisional
Probab=99.66 E-value=2.1e-16 Score=136.74 Aligned_cols=75 Identities=25% Similarity=0.476 Sum_probs=73.2
Q ss_pred eEEEEEecCCceEEEEcCCCCcHHHHHHHHhhhhCCCCCCeEEEECCeecCCCccccccCCCCCCEEEEe-eCCCC
Q psy15035 605 LMINIKSNTGNTVCVNLDPASDIRNVKEMIAPKLGLKYEEVKIIFAGKELEDTTIISECDLGQQSILHAV-KSSPE 679 (816)
Q Consensus 605 M~V~Vk~~~g~t~~v~V~~~~TV~~LK~~I~~~~Gip~~~qrLif~Gk~L~d~~tL~~~~I~~~stl~lv-r~~gg 679 (816)
|+|+||+.+|++++++|++++||++||++|++++|+|+++|+|+|+|+.|+|+.+|++|+|+++++||++ |++||
T Consensus 1 m~i~vk~~~G~~~~l~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~g~~L~d~~~l~~~~i~~~~~i~l~~~~~gg 76 (76)
T PTZ00044 1 MQILIKTLTGKKQSFNFEPDNTVQQVKMALQEKEGIDVKQIRLIYSGKQMSDDLKLSDYKVVPGSTIHMVLQLRGG 76 (76)
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCCHHHeEEEECCEEccCCCcHHHcCCCCCCEEEEEEEccCC
Confidence 8999999999999999999999999999999999999999999999999999999999999999999999 88876
No 19
>cd01810 ISG15_repeat2 ISG15 ubiquitin-like protein, second repeat of 2. ISG15 is a ubiquitin-like protein containing two ubiquitin homology domains and becomes conjugated to a variety of proteins when cells are treated with type I interferon or lipopolysaccharide. Although ISG15 has properties similar to those of other ubiquitin-like molecules, it is a unique member of the ubiquitin-like superfamily, whose expression and conjugation to target proteins are tightly regulated by specific signaling pathways, indicating it may have specialized functions in the immune system.
Probab=99.62 E-value=7.3e-16 Score=132.84 Aligned_cols=73 Identities=12% Similarity=0.277 Sum_probs=70.9
Q ss_pred EEEEecCCceEEEEcCCCCcHHHHHHHHhhhhCCCCCCeEEEECCeecCCCccccccCCCCCCEEEEe-eCCCC
Q psy15035 607 INIKSNTGNTVCVNLDPASDIRNVKEMIAPKLGLKYEEVKIIFAGKELEDTTIISECDLGQQSILHAV-KSSPE 679 (816)
Q Consensus 607 V~Vk~~~g~t~~v~V~~~~TV~~LK~~I~~~~Gip~~~qrLif~Gk~L~d~~tL~~~~I~~~stl~lv-r~~gg 679 (816)
||||++.|++++++|++++||++||++|+++.|+|+++|+|+|+|+.|+|+.+|++|||+++++|+++ |++||
T Consensus 1 i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~G~~L~D~~tL~~~~i~~~~tl~l~~~l~gg 74 (74)
T cd01810 1 ILVRNDKGRSSIYEVQLTQTVATLKQQVSQRERVQADQFWLSFEGRPMEDEHPLGEYGLKPGCTVFMNLRLRGG 74 (74)
T ss_pred CEEECCCCCEEEEEECCcChHHHHHHHHHHHhCCCHHHeEEEECCEECCCCCCHHHcCCCCCCEEEEEEEccCC
Confidence 68999999999999999999999999999999999999999999999999999999999999999999 88876
No 20
>KOG2188|consensus
Probab=99.62 E-value=1.3e-14 Score=163.53 Aligned_cols=244 Identities=17% Similarity=0.203 Sum_probs=180.6
Q ss_pred ccCCchHHHHhhhhcCCHHHHHHHHHHHhHHHHHhhcCcchhHHHHHHHhcCC-HHHHHHHHHHHhHHHHHHhhCcCchH
Q psy15035 6 FSHDMSRIIQWLLKLSSPQMKKDIVKELLPFTVAMIKSKYSNALVKHMLKSGD-ENTKNEIIKALQPHVVTLLSHTTASP 84 (816)
Q Consensus 6 ~~hd~sRvIQ~~lk~gt~eqR~~I~~EL~~~i~eL~~d~yg~~vVQKlL~~gs-~eqr~~Ii~e~~g~v~~L~~h~~G~~ 84 (816)
.++.|||++..+++.+++..+......+++++.+|+.++.|||+||+||.+.+ .++...||+++.+++-.|+.+.|..-
T Consensus 343 ~d~tgSrllE~Imeva~~~~~~lf~~~f~~rl~~La~~p~aNF~lQrli~h~~~~e~v~~v~eeL~P~~~~LL~~g~~gV 422 (650)
T KOG2188|consen 343 SDQTGSRLLEVIMEVASESLLSLFYIVFCGRLDELAVHPIANFPLQRLINHLTSLEDVGSVIEELAPKLSSLLEQGNSGV 422 (650)
T ss_pred hcCcccHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhCccccchHHHHHHhccCHHHHHHHHHHHhHHHHHHHHcCCchH
Confidence 36889999999999999999977788889999999999999999999999976 99999999999999999999988764
Q ss_pred HHH---HHHHhcCCHHH--HHHHHHHHhcCcceeeccCCcchhHHhhcCChhHHHHHHHHHHH-----HHH--Hhhhhhc
Q psy15035 85 VLM---YAHDQVASPAQ--KLAMRQELYGGLYESTGDKKINCLGDIFEQSPEMKTAILSVTKK-----TIL--KSLQKTQ 152 (816)
Q Consensus 85 VVq---k~~~~~at~eQ--r~~Li~e~yg~~~~l~kd~~~~~l~~ile~~pekk~~Il~~l~~-----~l~--~lv~K~~ 152 (816)
|.- ..- .+++.+. .+.|++.|+. +++.+++.+.--|.. ... ...++
T Consensus 423 v~sLia~~~-rl~s~q~~~l~~Li~a~~~-------------------~~~~~k~il~~lL~~~~~~g~~~~~~~t~~-- 480 (650)
T KOG2188|consen 423 VASLIAASA-RLGSYQDKMLQQLIQAFHA-------------------ASESKKNILPCLLFSLTLFGCVGEWFLTEK-- 480 (650)
T ss_pred hHHHHHHHH-hhchhHHHHHHHHHHHHhc-------------------CChhhcchHHHHHHHhhhcccccccccHHH--
Confidence 322 222 2222221 1223333321 223333332211111 110 11122
Q ss_pred ccCCcchhhhHHHhhhcCCC---hhhHHHHHHHhCCCCccccccCcChHHHHHHHHhh--cCHHHHHHHHHHHHHHHHHH
Q psy15035 153 VTGSALLHAVLLDFISHSSD---SPDLMEVLEMLAPLPLLPFVHSKAGASVAMHIIWN--ATNKLKKKIVKELKGHLREV 227 (816)
Q Consensus 153 ~~~~~ivh~vl~ey~~~~~~---~~~~~~iie~l~~~~l~~L~~tk~Gs~Vv~~cl~~--~~~kdRk~Iik~lk~~v~~L 227 (816)
.++...++++-+.+++. .-..+-|.+...++ +.+++.+..|||||+..|.- ..++.|+.+|..+.++...|
T Consensus 481 ---~h~~ga~lle~lv~f~k~~i~~litsll~L~~eq-i~e~~~~~~~ShlIeavL~S~~l~~~~~~kLi~~l~g~~~~L 556 (650)
T KOG2188|consen 481 ---FHQKGAVLLEELVNFSKTHIQTLITSLLSLSEEQ-ILEMSCNGVGSHLIEAVLASKDLGEKIKEKLINILDGSFVTL 556 (650)
T ss_pred ---HhhchhHHHHHHHhhchhhhHHHHHHHHhhhHHH-HHHHhcCCchHHHHHHHHHhccccHHHHHHHHHHhhccchhe
Confidence 11122334444444443 12445555556688 99999999999999999987 78999999999999999999
Q ss_pred hhCcCchHHHHHHHccCCchHHHHHHHHHHHHHhHHhHhcChhhHHHHHH
Q psy15035 228 ATSEFGHLVLVTLLDNVDDTLLLKKALLPELLAEVVPLANHEYGRKVIAH 277 (816)
Q Consensus 228 a~d~~G~~Vlq~~l~~~DDt~l~~k~Iv~eL~~~l~~L~~d~yG~~Vl~~ 277 (816)
+.+.||++|..+|++.++ .+.+..|.++|.+--..+..++||++|...
T Consensus 557 a~~~~GSrv~eK~wea~~--~~~k~rIakeL~~~~~~vk~s~~gk~v~~~ 604 (650)
T KOG2188|consen 557 ALSTFGSRVFEKCWEATD--VLYKERIAKELVGIHNDVKSSKYGKFVMLN 604 (650)
T ss_pred eecCcccHHHHHHHHHhh--HHHHHHHHHHHHhhccccccCcchHHHHHh
Confidence 999999999999999998 446888999999999999999999999854
No 21
>cd01797 NIRF_N amino-terminal ubiquitin-like domain of Np95 and NIRF. NIRF_N This CD represents the amino-terminal ubiquitin-like domain of a family of nuclear proteins that includes Np95 and NIRF (Np95/ICBP90-like RING finger) protein. Both Np95 and NIRF have a domain architecture consisting of a ubiquitin-like domain, a PHD finger, a YDG/SRA domain, Rb-binding motifs and a RING finger domain. Both Np95 and NIRF are ubiquitin ligases that ubiquitinate PCNP (PEST-containing nuclear proteins). While Np95 is capable of binding histones, NIRF is involved in cell cycle regulation.
Probab=99.62 E-value=9.7e-16 Score=133.27 Aligned_cols=74 Identities=19% Similarity=0.468 Sum_probs=70.1
Q ss_pred eEEEEEecCCce-EEEE-cCCCCcHHHHHHHHhhhhCCCCCCeEEEECCeecCCCccccccCCCCCCEEEEe-eCCC
Q psy15035 605 LMINIKSNTGNT-VCVN-LDPASDIRNVKEMIAPKLGLKYEEVKIIFAGKELEDTTIISECDLGQQSILHAV-KSSP 678 (816)
Q Consensus 605 M~V~Vk~~~g~t-~~v~-V~~~~TV~~LK~~I~~~~Gip~~~qrLif~Gk~L~d~~tL~~~~I~~~stl~lv-r~~g 678 (816)
|+|+||+.+|++ ++++ +++++||.+||++|++.+|+|+++|||+|+|+.|+|+.||++|||+++++||++ |..+
T Consensus 1 M~I~vk~~~G~~~~~l~~v~~~~TV~~lK~~i~~~~gi~~~~QrLi~~Gk~L~D~~tL~~y~i~~~~~i~l~~~~~~ 77 (78)
T cd01797 1 MWIQVRTMDGKETRTVDSLSRLTKVEELREKIQELFNVEPECQRLFYRGKQMEDGHTLFDYNVGLNDIIQLLVRQDP 77 (78)
T ss_pred CEEEEEcCCCCEEEEeeccCCcCcHHHHHHHHHHHhCCCHHHeEEEeCCEECCCCCCHHHcCCCCCCEEEEEEecCC
Confidence 899999999997 6895 899999999999999999999999999999999999999999999999999999 7543
No 22
>cd01803 Ubiquitin Ubiquitin. Ubiquitin (includes Ubq/RPL40e and Ubq/RPS27a fusions as well as homopolymeric multiubiquitin protein chains)
Probab=99.61 E-value=1.4e-15 Score=131.24 Aligned_cols=75 Identities=35% Similarity=0.585 Sum_probs=73.3
Q ss_pred eEEEEEecCCceEEEEcCCCCcHHHHHHHHhhhhCCCCCCeEEEECCeecCCCccccccCCCCCCEEEEe-eCCCC
Q psy15035 605 LMINIKSNTGNTVCVNLDPASDIRNVKEMIAPKLGLKYEEVKIIFAGKELEDTTIISECDLGQQSILHAV-KSSPE 679 (816)
Q Consensus 605 M~V~Vk~~~g~t~~v~V~~~~TV~~LK~~I~~~~Gip~~~qrLif~Gk~L~d~~tL~~~~I~~~stl~lv-r~~gg 679 (816)
|+|+||+.+|+++.++|++++||++||++|++++|+|+++|+|+|+|+.|+|+.+|++|+++++++||++ |++||
T Consensus 1 m~i~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~g~~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~~gg 76 (76)
T cd01803 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76 (76)
T ss_pred CEEEEEcCCCCEEEEEECCcCcHHHHHHHHHHHhCCCHHHeEEEECCEECCCCCcHHHcCCCCCCEEEEEEEccCC
Confidence 8999999999999999999999999999999999999999999999999999999999999999999999 98886
No 23
>KOG0003|consensus
Probab=99.61 E-value=1e-16 Score=141.05 Aligned_cols=75 Identities=33% Similarity=0.577 Sum_probs=73.5
Q ss_pred eEEEEEecCCceEEEEcCCCCcHHHHHHHHhhhhCCCCCCeEEEECCeecCCCccccccCCCCCCEEEEe-eCCCC
Q psy15035 605 LMINIKSNTGNTVCVNLDPASDIRNVKEMIAPKLGLKYEEVKIIFAGKELEDTTIISECDLGQQSILHAV-KSSPE 679 (816)
Q Consensus 605 M~V~Vk~~~g~t~~v~V~~~~TV~~LK~~I~~~~Gip~~~qrLif~Gk~L~d~~tL~~~~I~~~stl~lv-r~~gg 679 (816)
|++|+++.+|+|++++|+|++||.++|.+|+.+.|+||++|+|+|+|++|+|+.||++|||+..+|+|++ |++||
T Consensus 1 ~~~~~~~~~GKT~~le~EpS~ti~~vKA~i~~~~Gi~~~~~~L~~~~k~LED~~Tla~Y~i~~~~Tl~~~~rL~GG 76 (128)
T KOG0003|consen 1 MQIFVKTLTGKTITLEVEPSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76 (128)
T ss_pred CcEEEEEeeCceEEEEecccchHHHHHHHhccccCCCHHHHHHHhcccccccCCcccccCccchhhhhhhHHHhcC
Confidence 6789999999999999999999999999999999999999999999999999999999999999999999 99998
No 24
>cd01806 Nedd8 Nebb8-like ubiquitin protein. Nedd8 (also known as Rub1) has a single conserved ubiquitin-like domain that is part of a protein modification pathway similar to that of ubiquitin. Nedd8 modifies a family of molecular scaffold proteins called cullins that are responsible for assembling the ROC1/Rbx1 RING-based E3 ubiquitin ligases, of which several play a direct role in tumorigenesis.
Probab=99.60 E-value=3.3e-15 Score=129.01 Aligned_cols=75 Identities=24% Similarity=0.531 Sum_probs=72.9
Q ss_pred eEEEEEecCCceEEEEcCCCCcHHHHHHHHhhhhCCCCCCeEEEECCeecCCCccccccCCCCCCEEEEe-eCCCC
Q psy15035 605 LMINIKSNTGNTVCVNLDPASDIRNVKEMIAPKLGLKYEEVKIIFAGKELEDTTIISECDLGQQSILHAV-KSSPE 679 (816)
Q Consensus 605 M~V~Vk~~~g~t~~v~V~~~~TV~~LK~~I~~~~Gip~~~qrLif~Gk~L~d~~tL~~~~I~~~stl~lv-r~~gg 679 (816)
|+|+||+.+|+++.++|++++||++||++|+...|+|+++|+|+|+|+.|.|+.+|++|+|++|++||++ +.+||
T Consensus 1 m~i~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~g~~~~~qrL~~~g~~L~d~~tl~~~~i~~g~~i~l~~~~~gg 76 (76)
T cd01806 1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDDKTAADYKLEGGSVLHLVLALRGG 76 (76)
T ss_pred CEEEEEeCCCCEEEEEECCCCCHHHHHHHHhHhhCCChhhEEEEECCeEccCCCCHHHcCCCCCCEEEEEEEccCC
Confidence 7899999999999999999999999999999999999999999999999999999999999999999999 88876
No 25
>cd01804 midnolin_N Ubiquitin-like domain of midnolin. midnolin_N Midnolin (midbrain nucleolar protein) is expressed in the nucleolus and is thought to regulate genes involved in neurogenesis. Midnolin contains an amino-terminal ubiquitin-like domain.
Probab=99.59 E-value=3.8e-15 Score=129.64 Aligned_cols=75 Identities=21% Similarity=0.363 Sum_probs=72.0
Q ss_pred ceEEEEEecCCceEEEEcCCCCcHHHHHHHHhhhhCCCCCCeEEEECCeecCCCccccccCCCCCCEEEEe-eCCCC
Q psy15035 604 TLMINIKSNTGNTVCVNLDPASDIRNVKEMIAPKLGLKYEEVKIIFAGKELEDTTIISECDLGQQSILHAV-KSSPE 679 (816)
Q Consensus 604 ~M~V~Vk~~~g~t~~v~V~~~~TV~~LK~~I~~~~Gip~~~qrLif~Gk~L~d~~tL~~~~I~~~stl~lv-r~~gg 679 (816)
+|+|+||+..|++++++|++++||++||++|+++.|+|+++|||+|+|+.|+|+ +|++|||++|++|+++ .++||
T Consensus 1 ~m~I~Vk~~~G~~~~l~v~~~~TV~~LK~~I~~~~~~~~~~qrL~~~Gk~L~d~-~L~~~gi~~~~~i~l~~~~~~~ 76 (78)
T cd01804 1 PMNLNIHSTTGTRFDLSVPPDETVEGLKKRISQRLKVPKERLALLHRETRLSSG-KLQDLGLGDGSKLTLVPTVEAG 76 (78)
T ss_pred CeEEEEEECCCCEEEEEECCcCHHHHHHHHHHHHhCCChHHEEEEECCcCCCCC-cHHHcCCCCCCEEEEEeecccc
Confidence 499999999999999999999999999999999999999999999999999999 9999999999999999 77766
No 26
>cd01791 Ubl5 UBL5 ubiquitin-like modifier. UBL5 (also known as HUB1) is a ubiquitin-like modifier that is both widely expressed and highly phylogenetically conserved. At the C-terminal end of the ubiquitin-like fold of UBL5 is a di-tyrosine motif followed by a single variable residue instead of the characteristic di-glycine found in all other ubiquitin-like modifiers. ULB5 interacts with a cyclin-like kinase called CLK4 but not with other cyclin-like kinase family members.
Probab=99.58 E-value=3.9e-15 Score=127.67 Aligned_cols=71 Identities=17% Similarity=0.253 Sum_probs=68.9
Q ss_pred ceEEEEEecCCceEEEEcCCCCcHHHHHHHHhhhhCCCCCCeEEEECCeecCCCccccccCCCCCCEEEEe
Q psy15035 604 TLMINIKSNTGNTVCVNLDPASDIRNVKEMIAPKLGLKYEEVKIIFAGKELEDTTIISECDLGQQSILHAV 674 (816)
Q Consensus 604 ~M~V~Vk~~~g~t~~v~V~~~~TV~~LK~~I~~~~Gip~~~qrLif~Gk~L~d~~tL~~~~I~~~stl~lv 674 (816)
+|+|+||+..|+.+.++|++++||++||++|+++.|+|+++|||+|+|+.|+|+.||++|||++|++|||.
T Consensus 1 ~~~i~vkt~~Gk~~~~~v~~~~TV~~LK~~I~~~~~~~~~~qrLi~~Gk~L~D~~tL~~ygi~~~stv~l~ 71 (73)
T cd01791 1 MIEVVCNDRLGKKVRVKCNPDDTIGDLKKLIAAQTGTRPEKIVLKKWYTIFKDHISLGDYEIHDGMNLELY 71 (73)
T ss_pred CEEEEEECCCCCEEEEEeCCCCcHHHHHHHHHHHhCCChHHEEEEeCCcCCCCCCCHHHcCCCCCCEEEEE
Confidence 48999999999999999999999999999999999999999999999999999999999999999999985
No 27
>cd01798 parkin_N amino-terminal ubiquitin-like of parkin protein. parkin_N parkin protein is a RING-type E3 ubiquitin ligase with an amino-terminal ubiquitin-like (Ubl) domain and an RBR signature consisting of two RING finger domains separated by an IBR/DRIL domain. Naturally occurring mutations in parkin are thought to cause the disease AR_JP (autosomal-recessive juvenile parkinsonism). Parkin binds the Rpn10 subunit of 26S proteasomes through its Ubl domain.
Probab=99.57 E-value=3.8e-15 Score=126.91 Aligned_cols=68 Identities=53% Similarity=0.916 Sum_probs=66.8
Q ss_pred EEEEecCCceEEEEcCCCCcHHHHHHHHhhhhCCCCCCeEEEECCeecCCCccccccCCCCCCEEEEe
Q psy15035 607 INIKSNTGNTVCVNLDPASDIRNVKEMIAPKLGLKYEEVKIIFAGKELEDTTIISECDLGQQSILHAV 674 (816)
Q Consensus 607 V~Vk~~~g~t~~v~V~~~~TV~~LK~~I~~~~Gip~~~qrLif~Gk~L~d~~tL~~~~I~~~stl~lv 674 (816)
|+||+..|++++++|++++||++||+.|++++|+|+++|+|+|+|++|+|+.+|++|||+++++|||+
T Consensus 1 i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~q~Li~~G~~L~d~~~l~~~~i~~~stl~l~ 68 (70)
T cd01798 1 VYVRTNTGHTFPVEVDPDTDIKQLKEVVAKRQGVPPDQLRVIFAGKELRNTTTIQECDLGQQSILHAV 68 (70)
T ss_pred CEEEcCCCCEEEEEECCCChHHHHHHHHHHHHCCCHHHeEEEECCeECCCCCcHHHcCCCCCCEEEEE
Confidence 58999999999999999999999999999999999999999999999999999999999999999998
No 28
>KOG0005|consensus
Probab=99.54 E-value=4.2e-15 Score=117.24 Aligned_cols=70 Identities=27% Similarity=0.580 Sum_probs=68.3
Q ss_pred eEEEEEecCCceEEEEcCCCCcHHHHHHHHhhhhCCCCCCeEEEECCeecCCCccccccCCCCCCEEEEe
Q psy15035 605 LMINIKSNTGNTVCVNLDPASDIRNVKEMIAPKLGLKYEEVKIIFAGKELEDTTIISECDLGQQSILHAV 674 (816)
Q Consensus 605 M~V~Vk~~~g~t~~v~V~~~~TV~~LK~~I~~~~Gip~~~qrLif~Gk~L~d~~tL~~~~I~~~stl~lv 674 (816)
|.|.||+++|+.+.++++|+++|+.+|+.|+++.||||.+|||||+|+++.|+.|-.+|++..||++|++
T Consensus 1 m~iKvktLt~KeIeidIep~DkverIKErvEEkeGIPp~qqrli~~gkqm~DD~tA~~Y~~~~GSVlHlv 70 (70)
T KOG0005|consen 1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYAGKQMNDDKTAAHYNLLGGSVLHLV 70 (70)
T ss_pred CeeeEeeeccceEEEeeCcchHHHHHHHHhhhhcCCCchhhhhhhccccccccccHHHhhhccceeEeeC
Confidence 6789999999999999999999999999999999999999999999999999999999999999999985
No 29
>cd01794 DC_UbP_C dendritic cell derived ubiquitin-like protein. DC_UbP (dendritic cell derived ubiquitin-like protein) is a ubiquitin-like protein from human dendritic cells that is expressed in the mitochondrion. The ubiquitin-like domain of this protein is found at the C-terminus and lacks the canonical gly-gly motif of ubiquitin required for ubiquitinization. DC_UbP is expressed in tumor cells but not in normal human adult tissue suggesting a role for DC_UbP in tumorogenesis.
Probab=99.54 E-value=1.1e-14 Score=124.01 Aligned_cols=67 Identities=18% Similarity=0.357 Sum_probs=65.3
Q ss_pred EEEecCCceEEEEcCCCCcHHHHHHHHhhhhCCCCCCeEEEECCeecCCCccccccCCCCCCEEEEe
Q psy15035 608 NIKSNTGNTVCVNLDPASDIRNVKEMIAPKLGLKYEEVKIIFAGKELEDTTIISECDLGQQSILHAV 674 (816)
Q Consensus 608 ~Vk~~~g~t~~v~V~~~~TV~~LK~~I~~~~Gip~~~qrLif~Gk~L~d~~tL~~~~I~~~stl~lv 674 (816)
.||..+|++++++|++++||++||++|++++|+|+++|+|+|+|+.|+|+.+|++|+|+++++|||+
T Consensus 2 ~vk~~~G~~~~l~v~~~~TV~~lK~~I~~~~gi~~~~q~Li~~G~~L~D~~~l~~~~i~~~~tv~~~ 68 (70)
T cd01794 2 KVRLSTGKDVKLSVSSKDTVGQLKKQLQAAEGVDPCCQRWFFSGKLLTDKTRLQETKIQKDYVVQVI 68 (70)
T ss_pred eEEcCCCCEEEEEECCcChHHHHHHHHHHHhCCCHHHeEEEECCeECCCCCCHHHcCCCCCCEEEEE
Confidence 5789999999999999999999999999999999999999999999999999999999999999987
No 30
>cd01805 RAD23_N Ubiquitin-like domain of RAD23. RAD23 belongs to a family of adaptor molecules having affinity for both the proteasome and ubiquitinylated proteins and thought to shuttle these ubiquitinylated proteins to the proteasome for destruction. RAD23 interacts with ubiquitin through its C-terminal ubiquitin-associated domains (UBA) and with the proteasome through its N-terminal ubiquitin-like domain (UBL).
Probab=99.53 E-value=2.9e-14 Score=123.65 Aligned_cols=70 Identities=26% Similarity=0.455 Sum_probs=68.8
Q ss_pred eEEEEEecCCceEEEEcCCCCcHHHHHHHHhhhhCC--CCCCeEEEECCeecCCCccccccCCCCCCEEEEe
Q psy15035 605 LMINIKSNTGNTVCVNLDPASDIRNVKEMIAPKLGL--KYEEVKIIFAGKELEDTTIISECDLGQQSILHAV 674 (816)
Q Consensus 605 M~V~Vk~~~g~t~~v~V~~~~TV~~LK~~I~~~~Gi--p~~~qrLif~Gk~L~d~~tL~~~~I~~~stl~lv 674 (816)
|+|+||+.+|++++++|++++||.+||+.|++++|+ |+++|+|+|+|+.|+|+.+|++|||++|++|+++
T Consensus 1 m~i~vk~~~g~~~~l~v~~~~TV~~lK~~i~~~~~i~~~~~~q~L~~~G~~L~d~~~L~~~~i~~~~~i~~~ 72 (77)
T cd01805 1 MKITFKTLKQQTFPIEVDPDDTVAELKEKIEEEKGCDYPPEQQKLIYSGKILKDDTTLEEYKIDEKDFVVVM 72 (77)
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHhhCCCCChhHeEEEECCEEccCCCCHHHcCCCCCCEEEEE
Confidence 899999999999999999999999999999999999 9999999999999999999999999999999988
No 31
>cd01809 Scythe_N Ubiquitin-like domain of Scythe protein. Scythe protein (also known as Bat3) is an apoptotic regulator that is highly conserved in eukaryotes and contains a ubiquitin-like domain near its N-terminus. Scythe binds reaper, a potent apoptotic inducer, and Scythe/Reaper are thought to signal apoptosis, in part through regulating the folding and activity of apoptotic signaling molecules.
Probab=99.52 E-value=3e-14 Score=121.72 Aligned_cols=70 Identities=24% Similarity=0.463 Sum_probs=68.7
Q ss_pred eEEEEEecCCceEEEEcCCCCcHHHHHHHHhhhhCCCCCCeEEEECCeecCCCccccccCCCCCCEEEEe
Q psy15035 605 LMINIKSNTGNTVCVNLDPASDIRNVKEMIAPKLGLKYEEVKIIFAGKELEDTTIISECDLGQQSILHAV 674 (816)
Q Consensus 605 M~V~Vk~~~g~t~~v~V~~~~TV~~LK~~I~~~~Gip~~~qrLif~Gk~L~d~~tL~~~~I~~~stl~lv 674 (816)
|+|+||++.|+++++++++++||.+||++|++.+|+|++.|+|+|+|+.|+|+.+|++|||++|++||++
T Consensus 1 i~i~vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~l~l~ 70 (72)
T cd01809 1 IEIKVKTLDSQTHTFTVEEEITVLDLKEKIAEEVGIPVEQQRLIYSGRVLKDDETLSEYKVEDGHTIHLV 70 (72)
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEECCEECCCcCcHHHCCCCCCCEEEEE
Confidence 7899999999999999999999999999999999999999999999999999999999999999999998
No 32
>cd01800 SF3a120_C Ubiquitin-like domain of Mammalian splicing factor SF3a_120. SF3a120_C Mammalian splicing factor SF3a consists of three subunits of 60, 66, and 120 kDa and functions early during pre-mRNA splicing by converting the U2 snRNP to its active form. The 120kDa subunit (SF3a120) has a carboxy-terminal ubiquitin-like domain and two SWAP (suppressor-of-white-apricot) domains, referred to collectively as the SURP module, at its amino-terminus.
Probab=99.51 E-value=3.1e-14 Score=123.31 Aligned_cols=71 Identities=18% Similarity=0.289 Sum_probs=67.4
Q ss_pred cCCceEEEEcCCCCcHHHHHHHHhhhhCCCCCCeEEEECCeecCCCccccccCCCCCCEEEEe-eCCCCCCc
Q psy15035 612 NTGNTVCVNLDPASDIRNVKEMIAPKLGLKYEEVKIIFAGKELEDTTIISECDLGQQSILHAV-KSSPENNK 682 (816)
Q Consensus 612 ~~g~t~~v~V~~~~TV~~LK~~I~~~~Gip~~~qrLif~Gk~L~d~~tL~~~~I~~~stl~lv-r~~gg~~~ 682 (816)
++|++++++|++++||++||++|+..+|+|+++|+|+|+|+.|+|+.+|++|+|+++++|||+ +++||+++
T Consensus 5 l~g~~~~l~v~~~~TV~~lK~~i~~~~gip~~~q~L~~~G~~L~d~~tL~~~~i~~g~~l~v~~~~~gg~~~ 76 (76)
T cd01800 5 LNGQMLNFTLQLSDPVSVLKVKIHEETGMPAGKQKLQYEGIFIKDSNSLAYYNLANGTIIHLQLKERGGRKK 76 (76)
T ss_pred cCCeEEEEEECCCCcHHHHHHHHHHHHCCCHHHEEEEECCEEcCCCCcHHHcCCCCCCEEEEEEecCCCcCC
Confidence 478999999999999999999999999999999999999999999999999999999999999 98888653
No 33
>cd01808 hPLIC_N Ubiquitin-like domain of hPLIC-1 and hPLIC2. hPLIC-1 and hPLIC-2 (human homologs of the yeast ubiquitin-like Dsk2 protein) are type2 UBL's (ubiquitin-like) proteins that are thought to serve as adaptors that link the ubiquitination machinery to the proteasome. The hPLIC's have an N-terminal UBL domain that binds the S5a subunit of the proteasome and a C-terminal UBA (ubiquitin-associated) domain that binds a ubiquitylated protein.
Probab=99.49 E-value=6.4e-14 Score=119.72 Aligned_cols=69 Identities=22% Similarity=0.443 Sum_probs=66.2
Q ss_pred eEEEEEecCCceEEEEcCCCCcHHHHHHHHhhhhCCCCCCeEEEECCeecCCCccccccCCCCCCEEEEe
Q psy15035 605 LMINIKSNTGNTVCVNLDPASDIRNVKEMIAPKLGLKYEEVKIIFAGKELEDTTIISECDLGQQSILHAV 674 (816)
Q Consensus 605 M~V~Vk~~~g~t~~v~V~~~~TV~~LK~~I~~~~Gip~~~qrLif~Gk~L~d~~tL~~~~I~~~stl~lv 674 (816)
|+|+||+..|+ .++++++++||++||+.|+++.|+|+++|+|+|+|+.|+|+.+|++|||+++++||++
T Consensus 1 ~~i~vk~~~g~-~~l~v~~~~TV~~lK~~I~~~~~i~~~~~~Li~~Gk~L~d~~tL~~~~i~~~stl~l~ 69 (71)
T cd01808 1 IKVTVKTPKDK-EEIEIAEDASVKDFKEAVSKKFKANQEQLVLIFAGKILKDTDTLTQHNIKDGLTVHLV 69 (71)
T ss_pred CEEEEEcCCCC-EEEEECCCChHHHHHHHHHHHhCCCHHHEEEEECCeEcCCCCcHHHcCCCCCCEEEEE
Confidence 57899999997 4899999999999999999999999999999999999999999999999999999998
No 34
>cd01792 ISG15_repeat1 ISG15 ubiquitin-like protein, first repeat of 2. ISG15 is a ubiquitin-like protein containing two ubiquitin homology domains that becomes conjugated to a variety of proteins when cells are treated with type I interferon or lipopolysaccharide. Although ISG15 has properties similar to those of other ubiquitin-like molecules, it is a unique member of the ubiquitin-like superfamily, whose expression and conjugation to target proteins are tightly regulated by specific signaling pathways, indicating it may have specialized functions in the immune system.
Probab=99.47 E-value=8.6e-14 Score=121.80 Aligned_cols=71 Identities=23% Similarity=0.292 Sum_probs=69.2
Q ss_pred ceEEEEEecCCceEEEEcCCCCcHHHHHHHHhhhhCCCCCCeEE--EECCeecCCCccccccCCCCCCEEEEe
Q psy15035 604 TLMINIKSNTGNTVCVNLDPASDIRNVKEMIAPKLGLKYEEVKI--IFAGKELEDTTIISECDLGQQSILHAV 674 (816)
Q Consensus 604 ~M~V~Vk~~~g~t~~v~V~~~~TV~~LK~~I~~~~Gip~~~qrL--if~Gk~L~d~~tL~~~~I~~~stl~lv 674 (816)
.|+|+||+..|+++.++|++++||++||++|+++.|+|+++|+| +|+|+.|.|+.+|++|||++|++|+++
T Consensus 2 ~~~i~Vk~~~G~~~~~~v~~~~TV~~lK~~I~~~~~i~~~~qrL~~~~~G~~L~D~~tL~~~gi~~gs~l~l~ 74 (80)
T cd01792 2 GWDLKVKMLGGNEFLVSLRDSMTVSELKQQIAQKIGVPAFQQRLAHLDSREVLQDGVPLVSQGLGPGSTVLLV 74 (80)
T ss_pred ceEEEEEeCCCCEEEEEcCCCCcHHHHHHHHHHHhCCCHHHEEEEeccCCCCCCCCCCHHHcCCCCCCEEEEE
Confidence 38999999999999999999999999999999999999999999 999999999999999999999999999
No 35
>COG5078 Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.47 E-value=2.8e-14 Score=138.10 Aligned_cols=108 Identities=28% Similarity=0.402 Sum_probs=83.7
Q ss_pred hhhHHHHHHHhhhcCCCCCcceeccccCCCCcccceEEEEeCCCCCCCCCcchhhhhchhhhhhhhhhhheeccCCCCCc
Q psy15035 525 RNFRLLEELEHGQRGVGDGTISWGLENDDDMTLTHWTGMIIGPPRTSTTGHIMDTIIGYIMSVLNEILHLFWISRKPDNT 604 (816)
Q Consensus 525 ~~~~l~~el~~~~~~~~~~~~s~gl~~~~d~~l~~w~~~i~GP~~t~~e~~~~~l~i~f~~~yp~~~p~~~~~~~~~~~~ 604 (816)
+.+||++|+++++++++.+ +|++..+++ +|++|.++|.||++|+||||+|.+.|.||++||++||+| +|-.++
T Consensus 6 a~~RL~kE~~~l~~~~~~~-~~a~p~~d~--~l~~w~~~i~GP~dtpYegg~f~~~l~fP~~YP~~PPkv-~F~t~i--- 78 (153)
T COG5078 6 ALKRLLKELKKLQKDPPPG-ISAGPVDDD--NLFHWEATITGPPDTPYEGGIFKLTLEFPEDYPFKPPKV-RFTTKI--- 78 (153)
T ss_pred HHHHHHHHHHHHhcCCCCc-eEEEECCCC--cceeEEEEEECCCCCCcCCCEEEEEEECCCCCCCCCCee-eeccCC---
Confidence 7899999999999997555 888876555 667999999999999999999999999999999999999 476651
Q ss_pred eEEEEEecCCceEEEE-----cCCCCcHHHHHHHHhhhhCCC
Q psy15035 605 LMINIKSNTGNTVCVN-----LDPASDIRNVKEMIAPKLGLK 641 (816)
Q Consensus 605 M~V~Vk~~~g~t~~v~-----V~~~~TV~~LK~~I~~~~Gip 641 (816)
..-.|- .+|+ ++++ -+|..||..+-..|....+-|
T Consensus 79 ~HPNV~-~~G~-vCLdIL~~~WsP~~~l~sILlsl~slL~~P 118 (153)
T COG5078 79 FHPNVD-PSGN-VCLDILKDRWSPVYTLETILLSLQSLLLSP 118 (153)
T ss_pred cCCCcC-CCCC-ChhHHHhCCCCccccHHHHHHHHHHHHcCC
Confidence 111333 3344 3443 346778888887777776543
No 36
>cd01796 DDI1_N DNA damage inducible protein 1 ubiquitin-like domain. DDI1_N DDI1 (DNA damage inducible protein 1) has an amino-terminal ubiquitin-like domain, an retroviral protease-like (RVP-like) domain, and a UBA (ubiquitin-associated) domain. This CD represents the amino-terminal ubiquitin-like domain of DDI1.
Probab=99.46 E-value=1.2e-13 Score=118.12 Aligned_cols=68 Identities=18% Similarity=0.415 Sum_probs=64.6
Q ss_pred EEEEec-CCceEEEEcCCCCcHHHHHHHHhhhhCCCCCCeEEEECCeecCCC-ccccccCCCCCCEEEEe
Q psy15035 607 INIKSN-TGNTVCVNLDPASDIRNVKEMIAPKLGLKYEEVKIIFAGKELEDT-TIISECDLGQQSILHAV 674 (816)
Q Consensus 607 V~Vk~~-~g~t~~v~V~~~~TV~~LK~~I~~~~Gip~~~qrLif~Gk~L~d~-~tL~~~~I~~~stl~lv 674 (816)
|+||+. +|+++.++|++++||++||++|++++|+|+++|+|+|+|+.|+|+ .+|++|||+++++||+.
T Consensus 1 l~v~~~~~g~~~~l~v~~~~TV~~lK~~I~~~~gip~~~q~Li~~Gk~L~D~~~~L~~~gi~~~~~l~l~ 70 (71)
T cd01796 1 ITVYTARSETTFSLDVDPDLELENFKALCEAESGIPASQQQLIYNGRELVDNKRLLALYGVKDGDLVVLR 70 (71)
T ss_pred CEEEECCCCCEEEEEECCcCCHHHHHHHHHHHhCCCHHHeEEEECCeEccCCcccHHHcCCCCCCEEEEe
Confidence 478999 999999999999999999999999999999999999999999987 68999999999999974
No 37
>PF00240 ubiquitin: Ubiquitin family; InterPro: IPR000626 Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2, IPR000608 from INTERPRO), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade. There are many different E3 ligases, which are responsible for the type of ubiquitin chain formed, the specificity of the target protein, and the regulation of the ubiquitinylation process []. Ubiquitinylation is an important regulatory tool that controls the concentration of key signalling proteins, such as those involved in cell cycle control, as well as removing misfolded, damaged or mutant proteins that could be harmful to the cell. Several ubiquitin-like molecules have been discovered, such as Ufm1 (IPR005375 from INTERPRO), SUMO1 (IPR003653 from INTERPRO), NEDD8, Rad23 (IPR004806 from INTERPRO), Elongin B and Parkin (IPR003977 from INTERPRO), the latter being involved in Parkinson's disease []. Ubiquitin is a protein of 76 amino acid residues, found in all eukaryotic cells and whose sequence is extremely well conserved from protozoan to vertebrates. Ubiquitin acts through its post-translational attachment (ubiquitinylation) to other proteins, where these modifications alter the function, location or trafficking of the protein, or targets it for destruction by the 26S proteasome []. The terminal glycine in the C-terminal 4-residue tail of ubiquitin can form an isopeptide bond with a lysine residue in the target protein, or with a lysine in another ubiquitin molecule to form a ubiquitin chain that attaches itself to a target protein. Ubiquitin has seven lysine residues, any one of which can be used to link ubiquitin molecules together, resulting in different structures that alter the target protein in different ways. It appears that Lys(11)-, Lys(29) and Lys(48)-linked poly-ubiquitin chains target the protein to the proteasome for degradation, while mono-ubiquitinylated and Lys(6)- or Lys(63)-linked poly-ubiquitin chains signal reversible modifications in protein activity, location or trafficking []. For example, Lys(63)-linked poly-ubiquitinylation is known to be involved in DNA damage tolerance, inflammatory response, protein trafficking and signal transduction through kinase activation []. In addition, the length of the ubiquitin chain alters the fate of the target protein. Regulatory proteins such as transcription factors and histones are frequent targets of ubquitinylation [].; GO: 0005515 protein binding; PDB: 2DZI_A 2XEW_E 3NOB_E 2KWU_B 2Y5B_F 3PHD_G 2KWV_B 2KOX_A 2XK5_B 3NHE_B ....
Probab=99.44 E-value=1.9e-13 Score=115.90 Aligned_cols=67 Identities=31% Similarity=0.591 Sum_probs=64.6
Q ss_pred EecCCceEEEEcCCCCcHHHHHHHHhhhhCCCCCCeEEEECCeecCCCccccccCCCCCCEEEEe-eC
Q psy15035 610 KSNTGNTVCVNLDPASDIRNVKEMIAPKLGLKYEEVKIIFAGKELEDTTIISECDLGQQSILHAV-KS 676 (816)
Q Consensus 610 k~~~g~t~~v~V~~~~TV~~LK~~I~~~~Gip~~~qrLif~Gk~L~d~~tL~~~~I~~~stl~lv-r~ 676 (816)
|+.+|++++++|++++||.+||+.|+.++|+|+++|+|+|+|+.|+|+.||++|||++|++|+++ |.
T Consensus 1 k~~~g~~~~~~v~~~~tV~~lK~~i~~~~~~~~~~~~L~~~G~~L~d~~tL~~~~i~~~~~I~l~~k~ 68 (69)
T PF00240_consen 1 KTLSGKTFTLEVDPDDTVADLKQKIAEETGIPPEQQRLIYNGKELDDDKTLSDYGIKDGSTIHLVIKP 68 (69)
T ss_dssp EETTSEEEEEEEETTSBHHHHHHHHHHHHTSTGGGEEEEETTEEESTTSBTGGGTTSTTEEEEEEESS
T ss_pred CCCCCcEEEEEECCCCCHHHhhhhcccccccccccceeeeeeecccCcCcHHHcCCCCCCEEEEEEec
Confidence 67899999999999999999999999999999999999999999999999999999999999998 53
No 38
>KOG0425|consensus
Probab=99.43 E-value=1.4e-13 Score=129.83 Aligned_cols=85 Identities=27% Similarity=0.401 Sum_probs=71.0
Q ss_pred hhHHHHHHHhhhcCCCCCcceeccccCCCCcccceEEEEeCCCCCCCCCcchhhhhchhhhhhhhhhhheeccCC-----
Q psy15035 526 NFRLLEELEHGQRGVGDGTISWGLENDDDMTLTHWTGMIIGPPRTSTTGHIMDTIIGYIMSVLNEILHLFWISRK----- 600 (816)
Q Consensus 526 ~~~l~~el~~~~~~~~~~~~s~gl~~~~d~~l~~w~~~i~GP~~t~~e~~~~~l~i~f~~~yp~~~p~~~~~~~~----- 600 (816)
...|++||+++|+.+.+| +|+||++++|++ .|..+|+|||+|.||||+|.+.+.||.+||++||+| +|-+.
T Consensus 7 ~~ll~~qlk~L~~~pv~g-f~~glvd~~dif--~WeV~i~gppdTlYeGG~FkA~m~FP~dYP~sPP~~-rF~s~mwHPN 82 (171)
T KOG0425|consen 7 SLLLLKQLKELQEEPVEG-FSVGLVDDSDIF--EWEVAIIGPPDTLYEGGFFKAHMKFPQDYPLSPPTF-RFTSKMWHPN 82 (171)
T ss_pred HHHHHHHHHHHhcCCCCc-cccccccCCcee--EEEEEEEcCCCccccCceeEEEEeCcccCCCCCCce-eeehhhcCCC
Confidence 356899999999998777 899999888776 999999999999999999999999999999999998 57665
Q ss_pred --CCCceEEEEEecCC
Q psy15035 601 --PDNTLMINIKSNTG 614 (816)
Q Consensus 601 --~~~~M~V~Vk~~~g 614 (816)
.++.|=|.|=...|
T Consensus 83 vy~~G~vCISILH~pg 98 (171)
T KOG0425|consen 83 VYEDGDVCISILHPPG 98 (171)
T ss_pred cCCCCCEEEEeecCCC
Confidence 23345555544333
No 39
>cd01790 Herp_N Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain protein. Herp (Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain protein) , is an integral membrane protein that is induced by the endoplasmic reticulum (ER) stress response pathway and is involved in improving the balance of folding capacity and protein loads in the ER. Herp has an N-terminal ubiquitin-like domain that is involved in Herp degradation, but is not necessary for its enhancement of amyloid beta-protein generation.
Probab=99.41 E-value=3.9e-13 Score=116.15 Aligned_cols=71 Identities=17% Similarity=0.189 Sum_probs=64.5
Q ss_pred ceEEEEEecCCce--EEEEcCCCCcHHHHHHHHhhhhC--CCCCCeEEEECCeecCCCccccccC--CCCCCEEEEe
Q psy15035 604 TLMINIKSNTGNT--VCVNLDPASDIRNVKEMIAPKLG--LKYEEVKIIFAGKELEDTTIISECD--LGQQSILHAV 674 (816)
Q Consensus 604 ~M~V~Vk~~~g~t--~~v~V~~~~TV~~LK~~I~~~~G--ip~~~qrLif~Gk~L~d~~tL~~~~--I~~~stl~lv 674 (816)
+|.++||+++|++ |.+++++++||.+||++|+...+ .|+++|||||+||.|+|+.||++|. +.++.|||||
T Consensus 1 ~i~l~IK~~~~~~~~~~ve~~~~~TV~~lK~~i~~~~~~~~~~~~QrLIy~GKiLkD~~tL~~~~~~~~~~~tiHLV 77 (79)
T cd01790 1 PVTLLIKSPNQKYEDQTVSCFLNWTVGELKTHLSRVYPSKPLEQDQRLIYSGKLLPDHLKLRDVLRKQDEYHMVHLV 77 (79)
T ss_pred CeEEEEECCCCCeEEEEEecCCcChHHHHHHHHHHhcCCCCChhHeEEEEcCeeccchhhHHHHhhcccCCceEEEE
Confidence 3789999999988 66667999999999999999875 5579999999999999999999996 9999999998
No 40
>cd01812 BAG1_N Ubiquitin-like domain of BAG1. BAG1_N N-terminal ubiquitin-like (Ubl) domain of the BAG1 protein. This domain occurs together with the BAG domain and is closely related to the Ubl domain of a family of deubiquitinases that includes Rpn11, UBP6 (USP14), USP7 (HAUSP).
Probab=99.40 E-value=5.3e-13 Score=113.75 Aligned_cols=69 Identities=22% Similarity=0.441 Sum_probs=66.7
Q ss_pred eEEEEEecCCceEEEEcCCCCcHHHHHHHHhhhhCCCCCCeEEEECCeecCCCccccccCCCCCCEEEEe
Q psy15035 605 LMINIKSNTGNTVCVNLDPASDIRNVKEMIAPKLGLKYEEVKIIFAGKELEDTTIISECDLGQQSILHAV 674 (816)
Q Consensus 605 M~V~Vk~~~g~t~~v~V~~~~TV~~LK~~I~~~~Gip~~~qrLif~Gk~L~d~~tL~~~~I~~~stl~lv 674 (816)
|+|+||+. |+++.++|++++||++||++|+..+|+|+++|+|+|+|+.|.|+.+|++|||++|++|+++
T Consensus 1 i~i~vk~~-g~~~~i~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~g~~l~d~~~L~~~~i~~g~~l~v~ 69 (71)
T cd01812 1 IRVRVKHG-GESHDLSISSQATFGDLKKMLAPVTGVEPRDQKLIFKGKERDDAETLDMSGVKDGSKVMLL 69 (71)
T ss_pred CEEEEEEC-CEEEEEEECCCCcHHHHHHHHHHhhCCChHHeEEeeCCcccCccCcHHHcCCCCCCEEEEe
Confidence 57999996 9999999999999999999999999999999999999999999999999999999999997
No 41
>cd01813 UBP_N UBP ubiquitin processing protease. The UBP (ubiquitin processing protease) domain (also referred to as USP which stands for "ubiquitin-specific protease") is present at in a large family of cysteine proteases that specifically cleave ubiquitin conjugates. This family includes Rpn11, UBP6 (USP14), USP7 (HAUSP). This domain is closely related to the amino-terminal ubiquitin-like domain of BAG1 (Bcl2-associated anthanogene1) protein and is found only in eukaryotes.
Probab=99.39 E-value=6.8e-13 Score=114.26 Aligned_cols=69 Identities=22% Similarity=0.256 Sum_probs=66.0
Q ss_pred eEEEEEecCCceEEEEcCCCCcHHHHHHHHhhhhCCCCCCeEEEE---CCeecCCCccccccCCCCCCEEEEe
Q psy15035 605 LMINIKSNTGNTVCVNLDPASDIRNVKEMIAPKLGLKYEEVKIIF---AGKELEDTTIISECDLGQQSILHAV 674 (816)
Q Consensus 605 M~V~Vk~~~g~t~~v~V~~~~TV~~LK~~I~~~~Gip~~~qrLif---~Gk~L~d~~tL~~~~I~~~stl~lv 674 (816)
|.|.||+ +|+++.++|++++||++||++|++++|+|+++|+|+| .|+.|.|+.+|++|+|++|+.|+|+
T Consensus 1 ~~i~vk~-~g~~~~v~v~~~~Tv~~lK~~i~~~tgvp~~~QKLi~~~~~Gk~l~D~~~L~~~~i~~g~~i~lm 72 (74)
T cd01813 1 VPVIVKW-GGQEYSVTTLSEDTVLDLKQFIKTLTGVLPERQKLLGLKVKGKPAEDDVKISALKLKPNTKIMMM 72 (74)
T ss_pred CEEEEEE-CCEEEEEEECCCCCHHHHHHHHHHHHCCCHHHEEEEeecccCCcCCCCcCHHHcCCCCCCEEEEE
Confidence 5689999 6899999999999999999999999999999999996 9999999999999999999999998
No 42
>cd01763 Sumo Small ubiquitin-related modifier (SUMO). Small ubiquitin-related modifier (SUMO) proteins are conjugated to numerous intracellular targets and serve to modulate protein interaction, localization, activity or stability. SUMO (also known as "Smt3" and "sentrin" in other organisms) is linked to several different pathways, including nucleocytoplasmic transport. Attachment of SUMO to targets proteins is stimulated by PIAS (Protein inhibitor of activated STATs) proteins which serve as E3-like ligases.
Probab=99.38 E-value=1.6e-12 Score=115.66 Aligned_cols=79 Identities=14% Similarity=0.370 Sum_probs=76.2
Q ss_pred CCCceEEEEEecCCceEEEEcCCCCcHHHHHHHHhhhhCCCCCCeEEEECCeecCCCccccccCCCCCCEEEEe-eCCCC
Q psy15035 601 PDNTLMINIKSNTGNTVCVNLDPASDIRNVKEMIAPKLGLKYEEVKIIFAGKELEDTTIISECDLGQQSILHAV-KSSPE 679 (816)
Q Consensus 601 ~~~~M~V~Vk~~~g~t~~v~V~~~~TV~~LK~~I~~~~Gip~~~qrLif~Gk~L~d~~tL~~~~I~~~stl~lv-r~~gg 679 (816)
.+..|+|+|++.+|+++.++|.+++|+..||++++++.|+|+++|+|+|+|+.|+++.|+.+|+++++++|+++ +++||
T Consensus 8 ~~~~i~I~v~~~~g~~~~~~v~~~~~l~~l~~~y~~~~gi~~~~~rf~f~G~~L~~~~T~~~l~m~d~d~I~v~l~l~GG 87 (87)
T cd01763 8 ISEHINLKVKGQDGNEVFFKIKRSTPLKKLMEAYCQRQGLSMNSVRFLFDGQRIRDNQTPDDLGMEDGDEIEVMLEQTGG 87 (87)
T ss_pred CCCeEEEEEECCCCCEEEEEEcCCCHHHHHHHHHHHHhCCCccceEEEECCeECCCCCCHHHcCCCCCCEEEEEEecccC
Confidence 46689999999999999999999999999999999999999999999999999999999999999999999999 98886
No 43
>KOG0417|consensus
Probab=99.37 E-value=3.4e-13 Score=127.49 Aligned_cols=107 Identities=26% Similarity=0.331 Sum_probs=80.9
Q ss_pred hhHHHHHHHhhhcCCCCCcceeccccCCCCcccceEEEEeCCCCCCCCCcchhhhhchhhhhhhhhhhheeccCCCCCce
Q psy15035 526 NFRLLEELEHGQRGVGDGTISWGLENDDDMTLTHWTGMIIGPPRTSTTGHIMDTIIGYIMSVLNEILHLFWISRKPDNTL 605 (816)
Q Consensus 526 ~~~l~~el~~~~~~~~~~~~s~gl~~~~d~~l~~w~~~i~GP~~t~~e~~~~~l~i~f~~~yp~~~p~~~~~~~~~~~~M 605 (816)
..||.+|+++++++++.+ +++| +++.+|++|.++|.||++||||||+|.+.|.||++||.+||+| +|..++ .
T Consensus 3 ~~RI~kE~~~l~~dp~~~-~~~~---~~~dnl~~w~a~I~GP~~SpYEgG~F~l~I~~p~~YP~~PPkV-~F~TkI---y 74 (148)
T KOG0417|consen 3 SKRIIKELQDLLRDPPPG-CSAG---PVGDNLFHWQATILGPPGSPYEGGVFFLEIHFPEDYPFKPPKV-RFLTKI---Y 74 (148)
T ss_pred HHHHHHHHHHHhcCCCCC-CccC---CCCCceeeEEEEEECCCCCCcCCCEEEEEEECCCCCCCCCCce-Eeeccc---c
Confidence 349999999999997766 8887 4445677999999999999999999999999999999999999 476641 0
Q ss_pred EEEEEecCCceEEEE-----cCCCCcHHHHHHHHhhhhCCCC
Q psy15035 606 MINIKSNTGNTVCVN-----LDPASDIRNVKEMIAPKLGLKY 642 (816)
Q Consensus 606 ~V~Vk~~~g~t~~v~-----V~~~~TV~~LK~~I~~~~Gip~ 642 (816)
.=.|.. .|. +.++ =+|..||..+-..|.....=|-
T Consensus 75 HPNI~~-~G~-IclDILk~~WsPAl~i~~VllsI~sLL~~Pn 114 (148)
T KOG0417|consen 75 HPNIDS-NGR-ICLDILKDQWSPALTISKVLLSICSLLSDPN 114 (148)
T ss_pred cCCcCc-ccc-chHHhhhccCChhhHHHHHHHHHHHHhcCCC
Confidence 112221 232 3333 3567788888888888775443
No 44
>KOG2188|consensus
Probab=99.36 E-value=1.4e-10 Score=131.63 Aligned_cols=421 Identities=14% Similarity=0.094 Sum_probs=249.6
Q ss_pred cccccCCchHHHHhhhhcCCHHHHHHHHHHHhHHHHHhhcCcchhHHHHHHHhcC-----------C-------------
Q psy15035 3 QIVFSHDMSRIIQWLLKLSSPQMKKDIVKELLPFTVAMIKSKYSNALVKHMLKSG-----------D------------- 58 (816)
Q Consensus 3 ~l~~~hd~sRvIQ~~lk~gt~eqR~~I~~EL~~~i~eL~~d~yg~~vVQKlL~~g-----------s------------- 58 (816)
++|..+-+|-++|.++-.++..|-..+|.++.|++..++.++||.||.|++|+.. +
T Consensus 103 ~l~tnqi~Sk~le~l~~f~d~~ql~~ff~~~~g~lr~i~~~r~gshVle~~L~~~a~~vg~e~~~~s~dea~~~ke~p~~ 182 (650)
T KOG2188|consen 103 DLATNQIGSKVLEDLLGFSDSRQLCDFFSALNGVLRSIAQHRFGSHVLESALEKLAALVGQEAALLSEDEAAVEKEGPFV 182 (650)
T ss_pred ehhccchhHHHHHHHhccCCchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhCccccccchhhhcccccCccc
Confidence 5788899999999999999999999999999999999999999999999998751 1
Q ss_pred --HHHHHHHHHHHhHHHH-HHhhCcCchHHHHHHHHhcCCH----HHHHHHHHHHhcCcceeeccC------C----cch
Q psy15035 59 --ENTKNEIIKALQPHVV-TLLSHTTASPVLMYAHDQVASP----AQKLAMRQELYGGLYESTGDK------K----INC 121 (816)
Q Consensus 59 --~eqr~~Ii~e~~g~v~-~L~~h~~G~~VVqk~~~~~at~----eQr~~Li~e~yg~~~~l~kd~------~----~~~ 121 (816)
++--..+..++.+|+. .|+.|.||++|+-.++....+. +-...+..++.-+.-...-+. + ...
T Consensus 183 t~e~~~~~m~nei~~~~~~~l~~~~~gshv~rt~~l~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pqsFp~~l~~ 262 (650)
T KOG2188|consen 183 TCENLLLLMLNEISPHVLKTLMELIFGSHVLRTILLLLFSMCPIAESEHKLALRKAAHRGMDDWDAVTTPPQSFPQRLIV 262 (650)
T ss_pred ccchHHHHHHHHhhHHHHHHHHHHHHhHHHHHHHHHHHccCcchhhhHHHHHHHHHhhccccchhhhhcChhhccHHHHH
Confidence 1223567788999999 9999999999999888644332 222222222211100000000 0 000
Q ss_pred hHHhhc-CCh--------hHHHHHHHHHHHHHHHhhhhhcccCCcchhhhHH-HhhhcCCChhhHHHH--HHH-------
Q psy15035 122 LGDIFE-QSP--------EMKTAILSVTKKTILKSLQKTQVTGSALLHAVLL-DFISHSSDSPDLMEV--LEM------- 182 (816)
Q Consensus 122 l~~ile-~~p--------ekk~~Il~~l~~~l~~lv~K~~~~~~~ivh~vl~-ey~~~~~~~~~~~~i--ie~------- 182 (816)
+..... ..+ +-+..+++..... ++++ +++ .+-.+.++ +.+..+ +-.
T Consensus 263 ~i~~~l~~~~~~s~~~~~~~k~~~vDk~~s~---v~q~-----------~i~l~~~~~~~~-~~~~~~~lv~~~~~~~e~ 327 (650)
T KOG2188|consen 263 WICTGLSALQDVSESKKRDLKGYEVDKSSSN---VLQK-----------AIRLAFDENKND-QFMESPRLVTKFQLFNEK 327 (650)
T ss_pred HHhhhccccccchhhhhhHHHHHHHHHHHHH---HHHH-----------HHHHHhhhhcch-hhhhhhhHHHhhhhcccc
Confidence 111111 111 1111222111111 1111 111 11001111 100000 000
Q ss_pred -----hCCCCccccccCcChHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHhhCcCchHHHHHHHccCCchHHHHHHHHHH
Q psy15035 183 -----LAPLPLLPFVHSKAGASVAMHIIWNATNKLKKKIVKELKGHLREVATSEFGHLVLVTLLDNVDDTLLLKKALLPE 257 (816)
Q Consensus 183 -----l~~~~l~~L~~tk~Gs~Vv~~cl~~~~~kdRk~Iik~lk~~v~~La~d~~G~~Vlq~~l~~~DDt~l~~k~Iv~e 257 (816)
....-+.++..++.||+++..++..++++-+..+...+++.+.+||.|+.||.+||++++++-+.+.+ ..|+.|
T Consensus 328 d~~~~kE~~~~k~~l~d~tgSrllE~Imeva~~~~~~lf~~~f~~rl~~La~~p~aNF~lQrli~h~~~~e~v-~~v~ee 406 (650)
T KOG2188|consen 328 DGLWGKERSFLKELLSDQTGSRLLEVIMEVASESLLSLFYIVFCGRLDELAVHPIANFPLQRLINHLTSLEDV-GSVIEE 406 (650)
T ss_pred CcccccccHHHHHHHhcCcccHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhCccccchHHHHHHhccCHHHH-HHHHHH
Confidence 00110234455889999999999999999998888999999999999999999999999999766654 689999
Q ss_pred HHHhHHhHhcChhhHHHHHHhhccC-CCCCcCHHHHHhhcc-CCccccCCCCHHHHHHHHHHhhchhHHHHHHhcHHHHH
Q psy15035 258 LLAEVVPLANHEYGRKVIAHLVSWC-DPGFFHPTCIAHVKS-GDEFSTSKKDRDIRNKEILEAVSEPLLSSIAKDADFWL 335 (816)
Q Consensus 258 L~~~l~~L~~d~yG~~Vl~~Ll~~~-~~~~f~~~i~~~L~~-~~~~~~sKKd~~~Rr~EL~~~~~~~Ll~~i~~~~~~ll 335 (816)
|.+++..|....|-= |+..|+... .-.+.-..+++.|.+ ...+.-++|.--- .||- .........+|-
T Consensus 407 L~P~~~~LL~~g~~g-Vv~sLia~~~rl~s~q~~~l~~Li~a~~~~~~~~k~il~---~lL~------~~~~~g~~~~~~ 476 (650)
T KOG2188|consen 407 LAPKLSSLLEQGNSG-VVASLIAASARLGSYQDKMLQQLIQAFHAASESKKNILP---CLLF------SLTLFGCVGEWF 476 (650)
T ss_pred HhHHHHHHHHcCCch-HhHHHHHHHHhhchhHHHHHHHHHHHHhcCChhhcchHH---HHHH------Hhhhcccccccc
Confidence 999999998766543 344444331 111112334443333 2222222222111 1111 111222222332
Q ss_pred c----cCChhHHHHHHHhccCCcChHHHHHHHHHHHhhhccccchhhhhccccCchhhhhhhhhhccCCCccccccCCCC
Q psy15035 336 S----TGSVAMVTAVILKNALGPGLKEAFDSVANVIVDLERRVPLELKKDFASGNKNKQKKAAQQNKGGEKNQTAQGKKG 411 (816)
Q Consensus 336 ~----d~~g~~vv~~iL~~~~g~~~~~~~~aia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 411 (816)
. ...|++++++++.....- ++.+++.+.++-. . |
T Consensus 477 ~t~~~h~~ga~lle~lv~f~k~~-i~~litsll~L~~---e-------------------------------q------- 514 (650)
T KOG2188|consen 477 LTEKFHQKGAVLLEELVNFSKTH-IQTLITSLLSLSE---E-------------------------------Q------- 514 (650)
T ss_pred cHHHHhhchhHHHHHHHhhchhh-hHHHHHHHHhhhH---H-------------------------------H-------
Confidence 2 225899999999876644 5667777655321 1 1
Q ss_pred CCCcccCCCCccccCCCcccCchhHHHHHHHHhcCcccccccCcchHHHHHHhcChhhHhhhhccCCceeehHHHhhcCC
Q psy15035 412 TEGKKEAGNEKEEETTPFIEHPGFHTVLKKLLQHDRDNVAKELPTLSESIVAKASKEVLDFWTKCNRACFILVLILESGM 491 (816)
Q Consensus 412 ~~~~~~~~~~~~~~~~~~~~~p~~~r~lk~Li~~~~~~~~~~~~~f~~~l~~~i~~~~l~~w~~~nr~~fvl~~llE~~~ 491 (816)
..++.-++.++|++-..++.-. -++.+.+.|+..+..+ ...-+..-.|++|.=.++|..+
T Consensus 515 --------------i~e~~~~~~~ShlIeavL~S~~-----l~~~~~~kLi~~l~g~-~~~La~~~~GSrv~eK~wea~~ 574 (650)
T KOG2188|consen 515 --------------ILEMSCNGVGSHLIEAVLASKD-----LGEKIKEKLINILDGS-FVTLALSTFGSRVFEKCWEATD 574 (650)
T ss_pred --------------HHHHhcCCchHHHHHHHHHhcc-----ccHHHHHHHHHHhhcc-chheeecCcccHHHHHHHHHhh
Confidence 1455667888999998888621 1568888888888643 3344423379999999999988
Q ss_pred hhhHHHHHhhhcchhhhhcc
Q psy15035 492 ESCVSELKSKLSPFKTKLSS 511 (816)
Q Consensus 492 ~~~~~~~~~~lk~~~~~l~~ 511 (816)
..-+...-++|-.....+|.
T Consensus 575 ~~~k~rIakeL~~~~~~vk~ 594 (650)
T KOG2188|consen 575 VLYKERIAKELVGIHNDVKS 594 (650)
T ss_pred HHHHHHHHHHHHhhcccccc
Confidence 55554444444443334443
No 45
>KOG0419|consensus
Probab=99.34 E-value=7.2e-13 Score=121.20 Aligned_cols=109 Identities=20% Similarity=0.360 Sum_probs=84.2
Q ss_pred chhhhHHHHHHHhhhcCCCCCcceeccccCCCCcccceEEEEeCCCCCCCCCcchhhhhchhhhhhhhhhhheeccCCCC
Q psy15035 523 VPRNFRLLEELEHGQRGVGDGTISWGLENDDDMTLTHWTGMIIGPPRTSTTGHIMDTIIGYIMSVLNEILHLFWISRKPD 602 (816)
Q Consensus 523 vp~~~~l~~el~~~~~~~~~~~~s~gl~~~~d~~l~~w~~~i~GP~~t~~e~~~~~l~i~f~~~yp~~~p~~~~~~~~~~ 602 (816)
-|...||++++++++++++.| +|. .+-+.++..|+++|+||.+||||||.|+++|+|.++||++||.+ +|.+.|
T Consensus 3 tpArrrLmrDfkrlqedpp~g-isa---~P~~~niM~W~a~I~Gp~~tp~e~gtFkLtl~FteeYpnkPP~V-rFvs~m- 76 (152)
T KOG0419|consen 3 TPARRRLMRDFKRLQEDPPAG-ISA---APVENNIMEWNAVIFGPQDTPFEGGTFKLTLEFTEEYPNKPPTV-RFVSKM- 76 (152)
T ss_pred chHHHHHHHHHHHhhcCCCCC-ccC---CCCccceeeeeeeEEcCCCCCcCCceEEEEEEcccccCCCCCee-Eeeeec-
Confidence 477899999999999997777 776 34445677999999999999999999999999999999999998 576652
Q ss_pred CceEEEEEecCCceEEEEc-----CCCCcHHHHHHHHhhhhCCC
Q psy15035 603 NTLMINIKSNTGNTVCVNL-----DPASDIRNVKEMIAPKLGLK 641 (816)
Q Consensus 603 ~~M~V~Vk~~~g~t~~v~V-----~~~~TV~~LK~~I~~~~Gip 641 (816)
..-.| ..+|. +++++ +++.+|..+--.|+....=|
T Consensus 77 --FHPNv-ya~G~-iClDiLqNrWsp~Ydva~ILtsiQslL~dP 116 (152)
T KOG0419|consen 77 --FHPNV-YADGS-ICLDILQNRWSPTYDVASILTSIQSLLNDP 116 (152)
T ss_pred --cCCCc-CCCCc-chHHHHhcCCCCchhHHHHHHHHHHHhcCC
Confidence 11122 22343 44443 57778999988888877533
No 46
>smart00213 UBQ Ubiquitin homologues. Ubiquitin-mediated proteolysis is involved in the regulated turnover of proteins required for controlling cell cycle progression
Probab=99.24 E-value=1.6e-11 Score=101.96 Aligned_cols=64 Identities=25% Similarity=0.518 Sum_probs=61.3
Q ss_pred eEEEEEecCCceEEEEcCCCCcHHHHHHHHhhhhCCCCCCeEEEECCeecCCCccccccCCCCCC
Q psy15035 605 LMINIKSNTGNTVCVNLDPASDIRNVKEMIAPKLGLKYEEVKIIFAGKELEDTTIISECDLGQQS 669 (816)
Q Consensus 605 M~V~Vk~~~g~t~~v~V~~~~TV~~LK~~I~~~~Gip~~~qrLif~Gk~L~d~~tL~~~~I~~~s 669 (816)
|+|+||+.+ +++.++|++++||++||+.|+..+|+|+++|+|+|+|+.|.|+.+|++|||++|+
T Consensus 1 ~~i~vk~~~-~~~~~~v~~~~tv~~lk~~i~~~~~~~~~~~~L~~~g~~L~d~~tL~~~~i~~~~ 64 (64)
T smart00213 1 IELTVKTLD-GTITLEVKPSDTVSELKEKIAELTGIPVEQQRLIYKGKVLEDDRTLADYNIQDGS 64 (64)
T ss_pred CEEEEEECC-ceEEEEECCCCcHHHHHHHHHHHHCCCHHHEEEEECCEECCCCCCHHHcCCcCCC
Confidence 789999988 7899999999999999999999999999999999999999999999999999875
No 47
>KOG0426|consensus
Probab=99.20 E-value=1.2e-11 Score=112.97 Aligned_cols=70 Identities=20% Similarity=0.296 Sum_probs=60.7
Q ss_pred hhHHHHHHHhhhcCCCCCcceeccccCCCCcccceEEEEeCCCCCCCCCcchhhhhchhhhhhhhhhhheeccC
Q psy15035 526 NFRLLEELEHGQRGVGDGTISWGLENDDDMTLTHWTGMIIGPPRTSTTGHIMDTIIGYIMSVLNEILHLFWISR 599 (816)
Q Consensus 526 ~~~l~~el~~~~~~~~~~~~s~gl~~~~d~~l~~w~~~i~GP~~t~~e~~~~~l~i~f~~~yp~~~p~~~~~~~ 599 (816)
-.||++|++++.+++++| +-+|-.+.| +.+.|.+.|.||++|+|+||.|.+++.||.+||.+||+| +|--
T Consensus 6 lkRLm~EykqLt~~~P~G-IvAgP~~Ed--nfF~W~cLI~GP~~T~f~~GvfpA~l~FP~DYPLsPPkm-~Ftc 75 (165)
T KOG0426|consen 6 LKRLMAEYKQLTLNPPEG-IVAGPINED--NFFEWECLIQGPEDTCFEGGVFPARLSFPLDYPLSPPKM-RFTC 75 (165)
T ss_pred HHHHHHHHHHHccCCCCc-ceeCCCCcc--ceeeeeeeeeCCCCCcccCCccceeeecCCCCCCCCCce-eeec
Confidence 469999999999998888 777755444 445999999999999999999999999999999999998 3543
No 48
>cd01815 BMSC_UbP_N Ubiquitin-like domain of BMSC-UbP. BMSC_UbP (bone marrow stromal cell-derived ubiquitin-like protein) has an N-terminal ubiquitin-like (UBQ) domain and a C-terminal ubiquitin-associated (UBA) domain, a domain architecture similar to those of the UBIN, Chap1, and ubiquilin proteins. This CD represents the N-terminal ubiquitin-like domain.
Probab=99.19 E-value=1.8e-11 Score=104.39 Aligned_cols=53 Identities=23% Similarity=0.436 Sum_probs=49.5
Q ss_pred CCCcHHHHHHHHhhhh--CCC-CCCeEEEECCeecCCCccccccCCCCCCEEEEee
Q psy15035 623 PASDIRNVKEMIAPKL--GLK-YEEVKIIFAGKELEDTTIISECDLGQQSILHAVK 675 (816)
Q Consensus 623 ~~~TV~~LK~~I~~~~--Gip-~~~qrLif~Gk~L~d~~tL~~~~I~~~stl~lvr 675 (816)
.++||.+||++|+++. |+| +++|||||+||.|+|+.||++|||+++++|||+|
T Consensus 19 ~~~TV~~LK~kI~~~~~egi~~~dqQrLIy~GKiL~D~~TL~dygI~~gstlhLv~ 74 (75)
T cd01815 19 GGYQVSTLKQLIAAQLPDSLPDPELIDLIHCGRKLKDDQTLDFYGIQSGSTIHILR 74 (75)
T ss_pred ccCcHHHHHHHHHHhhccCCCChHHeEEEeCCcCCCCCCcHHHcCCCCCCEEEEEe
Confidence 5789999999999995 575 9999999999999999999999999999999984
No 49
>TIGR00601 rad23 UV excision repair protein Rad23. All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. In humans, Rad23 complexes with the XPC protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.18 E-value=5.2e-11 Score=132.36 Aligned_cols=70 Identities=19% Similarity=0.442 Sum_probs=68.5
Q ss_pred eEEEEEecCCceEEEEcCCCCcHHHHHHHHhhhhC---CCCCCeEEEECCeecCCCccccccCCCCCCEEEEe
Q psy15035 605 LMINIKSNTGNTVCVNLDPASDIRNVKEMIAPKLG---LKYEEVKIIFAGKELEDTTIISECDLGQQSILHAV 674 (816)
Q Consensus 605 M~V~Vk~~~g~t~~v~V~~~~TV~~LK~~I~~~~G---ip~~~qrLif~Gk~L~d~~tL~~~~I~~~stl~lv 674 (816)
|+|+||++.|++|.|+|++++||.+||++|+...| +|+++|||||+||.|+|+.+|++|+|+++++|+++
T Consensus 1 MkItVKtl~g~~~~IeV~~~~TV~dLK~kI~~~~g~~~ip~~~QkLIy~GkiL~Dd~tL~dy~I~e~~~Ivvm 73 (378)
T TIGR00601 1 MTLTFKTLQQQKFKIDMEPDETVKELKEKIEAEQGKDAYPVAQQKLIYSGKILSDDKTVREYKIKEKDFVVVM 73 (378)
T ss_pred CEEEEEeCCCCEEEEEeCCcChHHHHHHHHHHhhCCCCCChhHeEEEECCEECCCCCcHHHcCCCCCCEEEEE
Confidence 89999999999999999999999999999999999 99999999999999999999999999999999888
No 50
>PLN00172 ubiquitin conjugating enzyme; Provisional
Probab=99.14 E-value=6.8e-11 Score=115.45 Aligned_cols=107 Identities=22% Similarity=0.277 Sum_probs=82.7
Q ss_pred hhHHHHHHHhhhcCCCCCcceeccccCCCCcccceEEEEeCCCCCCCCCcchhhhhchhhhhhhhhhhheeccCCCCCce
Q psy15035 526 NFRLLEELEHGQRGVGDGTISWGLENDDDMTLTHWTGMIIGPPRTSTTGHIMDTIIGYIMSVLNEILHLFWISRKPDNTL 605 (816)
Q Consensus 526 ~~~l~~el~~~~~~~~~~~~s~gl~~~~d~~l~~w~~~i~GP~~t~~e~~~~~l~i~f~~~yp~~~p~~~~~~~~~~~~M 605 (816)
..||++||+++++.++.+ ++++.. +.++++|.++|.||++|+|+||.|.+.|.||++||.+||++. |..++ .
T Consensus 3 ~~Rl~kE~~~l~~~~~~~-~~~~~~---~~nl~~w~~~i~GP~~tpyegg~f~~~i~fp~~YP~~pP~v~-f~t~i---~ 74 (147)
T PLN00172 3 TKRIQKEHKDLLKDPPSN-CSAGPS---DENLFRWTASIIGPSDSPYAGGVFFLSILFPPDYPFKPPKVQ-FTTKI---Y 74 (147)
T ss_pred HHHHHHHHHHHHhCCCCC-eEEEEC---CCChheEEEEEECCCCCCCCCCEEEEEEECCcccCCCCCEEE-EecCc---c
Confidence 469999999999986665 788753 346789999999999999999999999999999999999984 76642 1
Q ss_pred EEEEEecCCceEEEEc-----CCCCcHHHHHHHHhhhhCCCC
Q psy15035 606 MINIKSNTGNTVCVNL-----DPASDIRNVKEMIAPKLGLKY 642 (816)
Q Consensus 606 ~V~Vk~~~g~t~~v~V-----~~~~TV~~LK~~I~~~~Gip~ 642 (816)
.-.|. .+| .+.+++ .|..||.++-..|.....-|-
T Consensus 75 HPNv~-~~G-~iCl~il~~~W~p~~ti~~il~~i~~ll~~P~ 114 (147)
T PLN00172 75 HPNIN-SNG-SICLDILRDQWSPALTVSKVLLSISSLLTDPN 114 (147)
T ss_pred cceEC-CCC-EEEcccCcCCCCCcCcHHHHHHHHHHHHhCCC
Confidence 11232 234 345542 578899999888888776553
No 51
>cd01799 Hoil1_N Ubiquitin-like domain of HOIL1. HOIL1_N HOIL-1 (heme-oxidized IRP2 ubiquitin ligase-1) is an E3 ubiquitin-protein ligase that recognizes heme-oxidized IRP2 (iron regulatory protein2) and is thought to affect the turnover of oxidatively damaged proteins. Hoil-1 has an amino-terminal ubiquitin-like domain as well as an RBR signature consisting of two RING finger domains separated by an IBR/DRIL domain.
Probab=99.12 E-value=1.2e-10 Score=100.56 Aligned_cols=64 Identities=11% Similarity=0.182 Sum_probs=59.0
Q ss_pred EecCCceEEEEcCCCCcHHHHHHHHhhhhCCCCCCeEEEECCeecC-CCccccccCCC-CCCEEEEe
Q psy15035 610 KSNTGNTVCVNLDPASDIRNVKEMIAPKLGLKYEEVKIIFAGKELE-DTTIISECDLG-QQSILHAV 674 (816)
Q Consensus 610 k~~~g~t~~v~V~~~~TV~~LK~~I~~~~Gip~~~qrLif~Gk~L~-d~~tL~~~~I~-~~stl~lv 674 (816)
|...|.+++++|++++||++||.+|+.++|+|+++|+| |+|+.|. |+.+|++||++ +|+++||.
T Consensus 8 ~~~~~~t~~l~v~~~~TV~~lK~kI~~~~gip~~~QrL-~~G~~L~dD~~tL~~ygi~~~g~~~~l~ 73 (75)
T cd01799 8 AQSHTVTIWLTVRPDMTVAQLKDKVFLDYGFPPAVQRW-VIGQRLARDQETLYSHGIRTNGDSAFLY 73 (75)
T ss_pred cccCCCeEEEEECCCCcHHHHHHHHHHHHCcCHHHEEE-EcCCeeCCCcCCHHHcCCCCCCCEEEEE
Confidence 44568899999999999999999999999999999999 9999995 77999999998 88999985
No 52
>cd01814 NTGP5 Ubiquitin-like NTGP5 and ATGP4. NTGP5 and ATGP4 are plant-specific isoprenylated GTP-binding proteins with a single fold that resembles ubiquitin. The function of these proteins is unknown.
Probab=99.11 E-value=1.5e-10 Score=105.25 Aligned_cols=76 Identities=26% Similarity=0.361 Sum_probs=65.6
Q ss_pred ceEEEEEecCCceE-EEEcCCCCcHHHHHHHHh-----hhhCCC--CCCeEEEECCeecCCCccccccC------CCCCC
Q psy15035 604 TLMINIKSNTGNTV-CVNLDPASDIRNVKEMIA-----PKLGLK--YEEVKIIFAGKELEDTTIISECD------LGQQS 669 (816)
Q Consensus 604 ~M~V~Vk~~~g~t~-~v~V~~~~TV~~LK~~I~-----~~~Gip--~~~qrLif~Gk~L~d~~tL~~~~------I~~~s 669 (816)
.+.|.+|..+|..+ +..+++++||++||++|+ .++|+| +++|+|||+||.|+|+.||++|+ +...+
T Consensus 4 ~~e~kfrl~dg~digp~~~~~sdTV~~lKekI~~~~p~~ke~~P~~~~~qKLIysGKiLeD~~TL~d~~~p~g~~~~~~~ 83 (113)
T cd01814 4 QIEIKFRLYDGSDIGPKRYPAATTVDFLKERVVSQWPKDKEVGPKTVNEVKLISAGKILENSKTVGECRSPVGDIAGGVI 83 (113)
T ss_pred cEEEEEEccCCCccCccccChhhHHHHHHHHHHHhcccccccCCCCHHHeEEEeCCeecCCCCcHHHhCCcccccCCCce
Confidence 45678888888654 778899999999999999 556677 99999999999999999999999 77789
Q ss_pred EEEEe-eCCCC
Q psy15035 670 ILHAV-KSSPE 679 (816)
Q Consensus 670 tl~lv-r~~gg 679 (816)
|+||+ |.+..
T Consensus 84 TmHvvlr~~~~ 94 (113)
T cd01814 84 TMHVVVQPPLA 94 (113)
T ss_pred EEEEEecCCCC
Confidence 99999 76554
No 53
>PTZ00390 ubiquitin-conjugating enzyme; Provisional
Probab=99.08 E-value=2e-10 Score=112.65 Aligned_cols=107 Identities=21% Similarity=0.186 Sum_probs=81.8
Q ss_pred hhHHHHHHHhhhcCCCCCcceeccccCCCCcccceEEEEeCCCCCCCCCcchhhhhchhhhhhhhhhhheeccCCCCCce
Q psy15035 526 NFRLLEELEHGQRGVGDGTISWGLENDDDMTLTHWTGMIIGPPRTSTTGHIMDTIIGYIMSVLNEILHLFWISRKPDNTL 605 (816)
Q Consensus 526 ~~~l~~el~~~~~~~~~~~~s~gl~~~~d~~l~~w~~~i~GP~~t~~e~~~~~l~i~f~~~yp~~~p~~~~~~~~~~~~M 605 (816)
..||++||++++++++++ +.+... +.++++|.++|.||++|||+||+|.+.|.||++||.+||++. |..++ .
T Consensus 4 ~kRl~~E~~~l~~~~~~~-i~~~~~---~~d~~~w~~~i~GP~~tpY~gg~f~~~i~~p~~YP~~pP~v~-F~t~i---~ 75 (152)
T PTZ00390 4 SKRIEKETQNLANDPPPG-IKAEPD---PGNYRHFKILMEGPDGTPYEGGYYKLELFLPEQYPMEPPKVR-FLTKI---Y 75 (152)
T ss_pred HHHHHHHHHHHHhCCCCC-eEEEEC---CCCccEEEEEEEcCCCCCCcCcEEEEEEECccccCCCCCEEE-EecCC---e
Confidence 469999999999987666 676543 235679999999999999999999999999999999999984 76642 1
Q ss_pred EEEEEecCCceEEEEc-----CCCCcHHHHHHHHhhhhCCCC
Q psy15035 606 MINIKSNTGNTVCVNL-----DPASDIRNVKEMIAPKLGLKY 642 (816)
Q Consensus 606 ~V~Vk~~~g~t~~v~V-----~~~~TV~~LK~~I~~~~Gip~ 642 (816)
.-.|- .+| .+++++ .|..||.++-..|.....-|-
T Consensus 76 HPNV~-~~G-~iCl~iL~~~W~p~~ti~~iL~~i~~ll~~P~ 115 (152)
T PTZ00390 76 HPNID-KLG-RICLDILKDKWSPALQIRTVLLSIQALLSAPE 115 (152)
T ss_pred eceEC-CCC-eEECccCcccCCCCCcHHHHHHHHHHHHhCCC
Confidence 22332 244 345553 378899999888887776543
No 54
>KOG0010|consensus
Probab=99.05 E-value=2.8e-10 Score=126.41 Aligned_cols=70 Identities=23% Similarity=0.446 Sum_probs=67.8
Q ss_pred ceEEEEEecCCceEEEEcCCCCcHHHHHHHHhhhhCCCCCCeEEEECCeecCCCccccccCCCCCCEEEEe
Q psy15035 604 TLMINIKSNTGNTVCVNLDPASDIRNVKEMIAPKLGLKYEEVKIIFAGKELEDTTIISECDLGQQSILHAV 674 (816)
Q Consensus 604 ~M~V~Vk~~~g~t~~v~V~~~~TV~~LK~~I~~~~Gip~~~qrLif~Gk~L~d~~tL~~~~I~~~stl~lv 674 (816)
.++|+||+..+ .+.+.|..+.||.+||+.|++.+++|+++++|||+||.|+|+.||..|||++|.|||||
T Consensus 15 ~irV~Vkt~~d-k~~~~V~~~ssV~qlKE~I~~~f~a~~dqlvLIfaGrILKD~dTL~~~gI~Dg~TvHLV 84 (493)
T KOG0010|consen 15 LIRVTVKTPKD-KYEVNVASDSSVLQLKELIAQRFGAPPDQLVLIYAGRILKDDDTLKQYGIQDGHTVHLV 84 (493)
T ss_pred eeEEEEecCCc-ceeEecccchHHHHHHHHHHHhcCCChhHeeeeecCccccChhhHHHcCCCCCcEEEEE
Confidence 58899999877 78999999999999999999999999999999999999999999999999999999999
No 55
>KOG0421|consensus
Probab=99.01 E-value=4.3e-10 Score=104.46 Aligned_cols=114 Identities=20% Similarity=0.210 Sum_probs=77.3
Q ss_pred cchhhhHHHHHHHhhhcCCCCCcceeccccCCCCcccceEEEEeCCCCCCCCCcchhhhhchhhhhhhhhhhheeccCCC
Q psy15035 522 IVPRNFRLLEELEHGQRGVGDGTISWGLENDDDMTLTHWTGMIIGPPRTSTTGHIMDTIIGYIMSVLNEILHLFWISRKP 601 (816)
Q Consensus 522 ~vp~~~~l~~el~~~~~~~~~~~~s~gl~~~~d~~l~~w~~~i~GP~~t~~e~~~~~l~i~f~~~yp~~~p~~~~~~~~~ 601 (816)
.-+-.+||+.||..+.-. ++.+.++.+++| +++.|.|+|-||.+|+|||..|++.+.||.+||.+||++- |..-+
T Consensus 27 ~~~V~KRLq~ELm~Lmms---~~~gISAFP~~d-nlf~WvGtItGp~dTvyegl~yklSl~Fp~~YPy~pP~vk-Fltpc 101 (175)
T KOG0421|consen 27 GHSVTKRLQSELMGLMMS---NTPGISAFPESD-NLFKWVGTITGPKDTVYEGLKYKLSLSFPNNYPYKPPTVK-FLTPC 101 (175)
T ss_pred CchHHHHHHHHHHHHHhc---CCCCcccCcCcC-ceeEEeeEeeCCCCccccCcEEEEEEecCCCCCCCCCeeE-eeccc
Confidence 345578999999999844 334455567776 8899999999999999999999999999999999999873 44321
Q ss_pred CCceEEEEEecCCceEEEEcC-C----CCcHHHHHHHHhhhhCCCCCCe
Q psy15035 602 DNTLMINIKSNTGNTVCVNLD-P----ASDIRNVKEMIAPKLGLKYEEV 645 (816)
Q Consensus 602 ~~~M~V~Vk~~~g~t~~v~V~-~----~~TV~~LK~~I~~~~Gip~~~q 645 (816)
..-.|-. .|. +++++- . -..|..+--.|+...|-|-..-
T Consensus 102 ---~HPNVD~-~Gn-IcLDILkdKWSa~YdVrTILLSiQSLLGEPNn~S 145 (175)
T KOG0421|consen 102 ---FHPNVDL-SGN-ICLDILKDKWSAVYDVRTILLSIQSLLGEPNNSS 145 (175)
T ss_pred ---cCCCccc-ccc-chHHHHHHHHHHHHhHHHHHHHHHHHhCCCCCCC
Confidence 1112211 222 344432 1 1235555556667777665443
No 56
>cd01769 UBL Ubiquitin-like domain of UBL. UBLs function by remodeling the surface of their target proteins, changing their target's half-life, enzymatic activity, protein-protein interactions, subcellular localization or other properties. At least 10 different ubiquitin-like modifications exist in mammals, and attachment of different ubls to a target leads to different biological consequences. Ubl-conjugation cascades are initiated by activating enzymes, which also coordinate the ubls with their downstream pathways.
Probab=98.99 E-value=1.1e-09 Score=92.20 Aligned_cols=66 Identities=33% Similarity=0.536 Sum_probs=63.5
Q ss_pred EEecCCceEEEEcCCCCcHHHHHHHHhhhhCCCCCCeEEEECCeecCCCccccccCCCCCCEEEEe
Q psy15035 609 IKSNTGNTVCVNLDPASDIRNVKEMIAPKLGLKYEEVKIIFAGKELEDTTIISECDLGQQSILHAV 674 (816)
Q Consensus 609 Vk~~~g~t~~v~V~~~~TV~~LK~~I~~~~Gip~~~qrLif~Gk~L~d~~tL~~~~I~~~stl~lv 674 (816)
||..+|+.+.+++++++||.+||+.|+.++|+|++.|+|+|+|+.|+|+.+|.+|++.++++|+++
T Consensus 2 v~~~~~~~~~~~~~~~~ti~~lK~~i~~~~~~~~~~~~l~~~g~~l~d~~~l~~~~v~~~~~i~v~ 67 (69)
T cd01769 2 VKTLTGKTFELEVSPDDTVAELKAKIAAKEGVPPEQQRLIYAGKILKDDKTLSDYGIQDGSTLHLV 67 (69)
T ss_pred eEccCCCEEEEEECCCChHHHHHHHHHHHHCcChHHEEEEECCcCCCCcCCHHHCCCCCCCEEEEE
Confidence 677789999999999999999999999999999999999999999999999999999999999987
No 57
>KOG0011|consensus
Probab=98.91 E-value=2.9e-09 Score=112.95 Aligned_cols=70 Identities=23% Similarity=0.451 Sum_probs=67.8
Q ss_pred eEEEEEecCCceEEEEcCCCCcHHHHHHHHhhhhC--CCCCCeEEEECCeecCCCccccccCCCCCCEEEEe
Q psy15035 605 LMINIKSNTGNTVCVNLDPASDIRNVKEMIAPKLG--LKYEEVKIIFAGKELEDTTIISECDLGQQSILHAV 674 (816)
Q Consensus 605 M~V~Vk~~~g~t~~v~V~~~~TV~~LK~~I~~~~G--ip~~~qrLif~Gk~L~d~~tL~~~~I~~~stl~lv 674 (816)
|+|+||++.|++|++++.|++||.++|++|+...| .|.++|+|||+||.|.|+.|+.+|+|.++..|.++
T Consensus 1 m~lt~KtL~q~~F~iev~Pe~tV~evK~kIet~~g~dyP~~~QkLIy~GkiL~D~~tv~Eykv~E~~fiVvM 72 (340)
T KOG0011|consen 1 MKLTVKTLKQQTFTIEVKPEDTVVEVKKKIETEKGPDYPAEQQKLIYSGKILKDETTVGEYKVKEKKFIVVM 72 (340)
T ss_pred CeeEeeeccCceeEeecCcchhHHHHHHHHHhccCCCCchhhheeeecceeccCCcchhhhccccCceEEEE
Confidence 88999999999999999999999999999999999 99999999999999999999999999998887777
No 58
>PF00179 UQ_con: Ubiquitin-conjugating enzyme; InterPro: IPR000608 The post-translational attachment of ubiquitin (IPR000626 from INTERPRO) to proteins (ubiquitinylation) alters the function, location or trafficking of a protein, or targets it to the 26S proteasome for degradation [, , ]. Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade []. The E1 enzyme mediates an ATP-dependent transfer of a thioester-linked ubiquitin molecule to a cysteine residue on the E2 enzyme. The E2 enzyme (6.3.2.19 from EC) then either transfers the ubiquitin moiety directly to a substrate, or to an E3 ligase, which can also ubiquitinylate a substrate. There are several different E2 enzymes (over 30 in humans), which are broadly grouped into four classes, all of which have a core catalytic domain (containing the active site cysteine), and some of which have short N- and C-terminal amino acid extensions: class I enzymes consist of just the catalytic core domain (UBC), class II possess a UBC and a C-terminal extension, class III possess a UBC and an N-terminal extension, and class IV possess a UBC and both N- and C-terminal extensions. These extensions appear to be important for some subfamily function, including E2 localisation and protein-protein interactions []. In addition, there are proteins with an E2-like fold that are devoid of catalytic activity, but which appear to assist in poly-ubiquitin chain formation.; GO: 0016881 acid-amino acid ligase activity; PDB: 2AAK_A 3SY2_C 1FBV_C 3SQV_C 1C4Z_D 1JAT_B 2GMI_B 2H2Y_D 2R0J_A 3E95_B ....
Probab=98.91 E-value=6.1e-10 Score=107.95 Aligned_cols=102 Identities=26% Similarity=0.359 Sum_probs=73.8
Q ss_pred HHHHHHHhhhcCCCCCcceeccccCCCCcccceEEEEeCCCCCCCCCcchhhhhchhhhhhhhhhhheeccCCCCCceEE
Q psy15035 528 RLLEELEHGQRGVGDGTISWGLENDDDMTLTHWTGMIIGPPRTSTTGHIMDTIIGYIMSVLNEILHLFWISRKPDNTLMI 607 (816)
Q Consensus 528 ~l~~el~~~~~~~~~~~~s~gl~~~~d~~l~~w~~~i~GP~~t~~e~~~~~l~i~f~~~yp~~~p~~~~~~~~~~~~M~V 607 (816)
||++||+++++.++.| ++++..++ .++.+|.++|.||++|+|+||+|.+.|.||++||.+||.+. |.+.+-..
T Consensus 1 Rl~~E~~~l~~~~~~~-~~~~~~~~--~~~~~w~~~i~gp~~t~y~gg~f~~~i~~p~~YP~~pP~v~-f~t~i~HP--- 73 (140)
T PF00179_consen 1 RLQKELKELQKNPPPG-ISVQPSED--DNLFEWHVTIFGPPGTPYEGGIFKFRISFPPDYPFSPPKVR-FLTPIFHP--- 73 (140)
T ss_dssp HHHHHHHHHHHSHTTT-EEEEEEST--TETTEEEEEEEBETTSTTTTSEEEEEEEETTTTTTS--EEE-ESSS-SBT---
T ss_pred CHHHHHHHHhhCCCCC-EEEEECCC--CChheEEEEEeccCccceecccccccccccccccccccccc-cccccccc---
Confidence 8999999999986666 88887653 45669999999999999999999999999999999999995 77651111
Q ss_pred EEEecCCceEEEEc------CCCCcHHHHHHHHhhhh
Q psy15035 608 NIKSNTGNTVCVNL------DPASDIRNVKEMIAPKL 638 (816)
Q Consensus 608 ~Vk~~~g~t~~v~V------~~~~TV~~LK~~I~~~~ 638 (816)
.|- .+|. +.+++ .+..||.++-..|....
T Consensus 74 ni~-~~G~-icl~~l~~~~W~p~~~i~~il~~i~~ll 108 (140)
T PF00179_consen 74 NID-ENGR-ICLDILNPESWSPSYTIESILLSIQSLL 108 (140)
T ss_dssp TB--TTSB-BGHGGGTTTTC-TTSHHHHHHHHHHHHH
T ss_pred ccc-cccc-chhhhhhcccCCcccccccHHHHHHHHH
Confidence 111 2333 33332 35667888777776655
No 59
>cd01795 USP48_C USP ubiquitin-specific protease. The USP (ubiquitin-specific protease) family is one of at least seven deubiquitylating enzyme (DUB) families capable of deconjugating ubiquitin and ubiquitin-like adducts. While the USP's have a conserved catalytic core domain, they differ in their domain architectures. This subfamily, which includes USP31, and USP48, has a carboxy-terminal ubiquitin-like domain in addition to a DUSP (domain of ubiquitin-specific proteases) domain,
Probab=98.90 E-value=2.4e-09 Score=94.55 Aligned_cols=59 Identities=12% Similarity=0.168 Sum_probs=55.8
Q ss_pred eEEEEcCCCCcHHHHHHHHhhhhCCCCCCeEEEECCeecC-CCccccccCCCCCCEEEEe
Q psy15035 616 TVCVNLDPASDIRNVKEMIAPKLGLKYEEVKIIFAGKELE-DTTIISECDLGQQSILHAV 674 (816)
Q Consensus 616 t~~v~V~~~~TV~~LK~~I~~~~Gip~~~qrLif~Gk~L~-d~~tL~~~~I~~~stl~lv 674 (816)
..+++|++++||.+||..|...+|+||++|+|+|+|+.|. |.+||++|||..+|+|+|.
T Consensus 16 ~~~L~V~~~~TVg~LK~lImQ~f~V~P~dQkL~~dG~~L~DDsrTLssyGv~sgSvl~Ll 75 (107)
T cd01795 16 EKALLVSANQTLKELKIQIMHAFSVAPFDQNLSIDGKILSDDCATLGTLGVIPESVILLK 75 (107)
T ss_pred CceEEeCccccHHHHHHHHHHHhcCCcccceeeecCceeccCCccHHhcCCCCCCEEEEE
Confidence 3578899999999999999999999999999999999996 6789999999999999999
No 60
>cd00195 UBCc Ubiquitin-conjugating enzyme E2, catalytic (UBCc) domain. This is part of the ubiquitin-mediated protein degradation pathway in which a thiol-ester linkage forms between a conserved cysteine and the C-terminus of ubiquitin and complexes with ubiquitin protein ligase enzymes, E3. This pathway regulates many fundamental cellular processes. There are also other E2s which form thiol-ester linkages without the use of E3s as well as several UBC homologs (TSG101, Mms2, Croc-1 and similar proteins) which lack the active site cysteine essential for ubiquitination and appear to function in DNA repair pathways which were omitted from the scope of this CD.
Probab=98.87 E-value=2.5e-09 Score=103.86 Aligned_cols=103 Identities=26% Similarity=0.358 Sum_probs=76.1
Q ss_pred hHHHHHHHhhhcCCCCCcceeccccCCCCcccceEEEEeCCCCCCCCCcchhhhhchhhhhhhhhhhheeccCCCCCceE
Q psy15035 527 FRLLEELEHGQRGVGDGTISWGLENDDDMTLTHWTGMIIGPPRTSTTGHIMDTIIGYIMSVLNEILHLFWISRKPDNTLM 606 (816)
Q Consensus 527 ~~l~~el~~~~~~~~~~~~s~gl~~~~d~~l~~w~~~i~GP~~t~~e~~~~~l~i~f~~~yp~~~p~~~~~~~~~~~~M~ 606 (816)
.||++|++++++.++.| +.+... +.++++|.++|.||++|+|+||+|.+.+.||++||.+||.+ +|...+- .
T Consensus 2 ~Rl~~E~~~l~~~~~~~-~~v~~~---~~~~~~w~~~i~g~~~t~y~g~~~~~~~~~p~~yP~~pP~v-~f~~~i~---H 73 (141)
T cd00195 2 KRLQKELKDLKKDPPSG-ISAEPV---EENLLEWHGTIRGPPDTPYEGGIFKLDIEFPEDYPFKPPKV-RFVTKIY---H 73 (141)
T ss_pred chHHHHHHHHHhCCCCC-eEEEEC---CCChhEEEEEEecCCCCCccCCEEEEEEECCCccCCCCCeE-EEeCCcc---c
Confidence 48999999999997666 676542 23677999999999999999999999999999999999998 4754421 1
Q ss_pred EEEEecCCceEEEE------cCCCCcHHHHHHHHhhhhC
Q psy15035 607 INIKSNTGNTVCVN------LDPASDIRNVKEMIAPKLG 639 (816)
Q Consensus 607 V~Vk~~~g~t~~v~------V~~~~TV~~LK~~I~~~~G 639 (816)
-.|- .+|. +.++ -.+..||.++-..|....-
T Consensus 74 pnV~-~~G~-icl~~l~~~~W~p~~~l~~il~~i~~~l~ 110 (141)
T cd00195 74 PNVD-ENGK-ICLSILKTHGWSPAYTLRTVLLSLQSLLN 110 (141)
T ss_pred CCCC-CCCC-CchhhcCCCCcCCcCcHHHHHHHHHHHHh
Confidence 1222 2343 3333 2345688888777776654
No 61
>PF11976 Rad60-SLD: Ubiquitin-2 like Rad60 SUMO-like; InterPro: IPR022617 This entry includes small ubiquitin-related modifier (SUMO) proteins. SUMOs are small proteins that are covalently attached to lysines as post-translational modifications and are used to control multiple cellular process including signal transduction, nuclear transport and DNA replication and repair []. Unlike ubiquitin, they are not involved in protein degradation. This entry also contains the C-terminal Rad60 DNA repair protein SUMO-like domain.; PDB: 3RD2_A 2JXX_A 3RCZ_A 3GOE_A 3A4S_D 3A4R_B 2IO1_D 1U4A_A 2K1F_A 1WZ0_A ....
Probab=98.84 E-value=7.2e-09 Score=88.61 Aligned_cols=70 Identities=19% Similarity=0.450 Sum_probs=65.9
Q ss_pred eEEEEEecCCceEEEEcCCCCcHHHHHHHHhhhhCCCC-CCeEEEECCeecCCCccccccCCCCCCEEEEe
Q psy15035 605 LMINIKSNTGNTVCVNLDPASDIRNVKEMIAPKLGLKY-EEVKIIFAGKELEDTTIISECDLGQQSILHAV 674 (816)
Q Consensus 605 M~V~Vk~~~g~t~~v~V~~~~TV~~LK~~I~~~~Gip~-~~qrLif~Gk~L~d~~tL~~~~I~~~stl~lv 674 (816)
|+|+|+..+|+.+.+.|.+++++..|++..+++.|+|+ ++++|+|.|+.|+++.|++++||++|++|+++
T Consensus 1 I~i~v~~~~~~~~~~~v~~~~~~~~l~~~~~~~~~i~~~~~~~l~fdG~~L~~~~T~~~~~ied~d~Idv~ 71 (72)
T PF11976_consen 1 ITIKVRSQDGKEIKFKVKPTTTVSKLIEKYCEKKGIPPEESIRLIFDGKRLDPNDTPEDLGIEDGDTIDVI 71 (72)
T ss_dssp EEEEEEETTSEEEEEEEETTSCCHHHHHHHHHHHTTTT-TTEEEEETTEEE-TTSCHHHHT-STTEEEEEE
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHhhCCCccceEEEEECCEEcCCCCCHHHCCCCCCCEEEEE
Confidence 78999999999999999999999999999999999999 99999999999999999999999999999985
No 62
>smart00212 UBCc Ubiquitin-conjugating enzyme E2, catalytic domain homologues. Proteins destined for proteasome-mediated degradation may be ubiquitinated. Ubiquitination follows conjugation of ubiquitin to a conserved cysteine residue of UBC homologues. This pathway functions in regulating many fundamental processes required for cell viability.TSG101 is one of several UBC homologues that lacks this active site cysteine.
Probab=98.76 E-value=5.2e-09 Score=102.13 Aligned_cols=105 Identities=30% Similarity=0.408 Sum_probs=77.0
Q ss_pred hHHHHHHHhhhcCCCCCcceeccccCCCCcccceEEEEeCCCCCCCCCcchhhhhchhhhhhhhhhhheeccCCCCCceE
Q psy15035 527 FRLLEELEHGQRGVGDGTISWGLENDDDMTLTHWTGMIIGPPRTSTTGHIMDTIIGYIMSVLNEILHLFWISRKPDNTLM 606 (816)
Q Consensus 527 ~~l~~el~~~~~~~~~~~~s~gl~~~~d~~l~~w~~~i~GP~~t~~e~~~~~l~i~f~~~yp~~~p~~~~~~~~~~~~M~ 606 (816)
.||++||++++++++.+ +.+-. .+|.+++.|.++|.||++|+|+|+.|.+.+.||++||..||.+. |... ...
T Consensus 1 ~Rl~~E~~~~~~~~~~~-~~v~~--~~~~~~~~w~~~i~gp~~~~y~g~~f~~~l~~p~~yP~~pP~v~-f~~~---i~H 73 (145)
T smart00212 1 KRLLKELKELLKDPPPG-ISAYP--VDEDNLLEWTGTIVGPPGTPYEGGIFKLTIEFPPDYPFKPPKVK-FITK---IYH 73 (145)
T ss_pred ChHHHHHHHHHhCCCCC-eEEEE--CCCCChheEEEEEEcCCCCCcCCcEEEEEEECCcccCCCCCEEE-EeCC---ceE
Confidence 48999999999997766 44432 23336779999999999999999999999999999999999996 6553 122
Q ss_pred EEEEecCCceEEEE-c-----CCCCcHHHHHHHHhhhhCC
Q psy15035 607 INIKSNTGNTVCVN-L-----DPASDIRNVKEMIAPKLGL 640 (816)
Q Consensus 607 V~Vk~~~g~t~~v~-V-----~~~~TV~~LK~~I~~~~Gi 640 (816)
-.|- .+|. +.+. + .+..++.++-..|....--
T Consensus 74 p~i~-~~G~-icl~~l~~~~W~p~~~l~~il~~i~~~l~~ 111 (145)
T smart00212 74 PNVD-SSGE-ICLDILKQEKWSPATTLETVLLSIQSLLSE 111 (145)
T ss_pred eeEC-CCCC-EehhhcCCCCCCCCCcHHHHHHHHHHHHhC
Confidence 2332 2443 3443 2 2567888888877776543
No 63
>KOG0418|consensus
Probab=98.70 E-value=6.5e-09 Score=101.53 Aligned_cols=107 Identities=20% Similarity=0.187 Sum_probs=75.3
Q ss_pred hhhHHHHHHHhhhcCCC--CCcceeccccCCCCcccceEEEEeCCCCCCCCCcchhhhhchhhhhhhhhhhheeccCC--
Q psy15035 525 RNFRLLEELEHGQRGVG--DGTISWGLENDDDMTLTHWTGMIIGPPRTSTTGHIMDTIIGYIMSVLNEILHLFWISRK-- 600 (816)
Q Consensus 525 ~~~~l~~el~~~~~~~~--~~~~s~gl~~~~d~~l~~w~~~i~GP~~t~~e~~~~~l~i~f~~~yp~~~p~~~~~~~~-- 600 (816)
|-.|+.+|+++..+++. ...+-.-+.+ .++++-+|+|-||++||||||.|.+.|.+|++||++||+|. |..+
T Consensus 4 ~~~ri~~e~k~v~~~~eisq~~I~ve~vn---~~~~~ikG~I~GP~~TPYEGG~FeldI~iPe~YPF~pPkv~-F~TkIw 79 (200)
T KOG0418|consen 4 AFKRINREQKEVLDDPEISQAGIIVEMVN---ENLKEIKGHIAGPEDTPYEGGVFELDIKIPENYPFKPPKVK-FITKIW 79 (200)
T ss_pred HHHHHHHHHHHhccChhhhhcceEEEEcc---CChhhceeEecCCCCCCCCCceEEEEEecCCCCCCCCCcee-eeeeee
Confidence 56789999999987742 2223443333 34568899999999999999999999999999999999994 7775
Q ss_pred CCCceEEEEEecCCceEEEEcC-----CCCcHHHHHHHHhhhhCCC
Q psy15035 601 PDNTLMINIKSNTGNTVCVNLD-----PASDIRNVKEMIAPKLGLK 641 (816)
Q Consensus 601 ~~~~M~V~Vk~~~g~t~~v~V~-----~~~TV~~LK~~I~~~~Gip 641 (816)
-+ .|-..+| .+++++. +..|+..+--.++.....|
T Consensus 80 HP-----nVSs~tG-aICLDilkd~Wa~slTlrtvLislQalL~~p 119 (200)
T KOG0418|consen 80 HP-----NVSSQTG-AICLDILKDQWAASLTLRTVLISLQALLCAP 119 (200)
T ss_pred cC-----CCCcccc-cchhhhhhcccchhhhHHHHHHHHHHHHcCC
Confidence 12 1222233 3566543 4557766666666666543
No 64
>KOG0001|consensus
Probab=98.66 E-value=1.1e-07 Score=79.99 Aligned_cols=71 Identities=31% Similarity=0.529 Sum_probs=67.5
Q ss_pred EEEEecCCceEEEEcCCCCcHHHHHHHHhhhhCCCCCCeEEEECCeecCCCccccccCCCCCCEEEEe-eCC
Q psy15035 607 INIKSNTGNTVCVNLDPASDIRNVKEMIAPKLGLKYEEVKIIFAGKELEDTTIISECDLGQQSILHAV-KSS 677 (816)
Q Consensus 607 V~Vk~~~g~t~~v~V~~~~TV~~LK~~I~~~~Gip~~~qrLif~Gk~L~d~~tL~~~~I~~~stl~lv-r~~ 677 (816)
+++++..|+++.+++.+..+|..+|.+|+...|+|+++|++.|.|+.|+|+.+|.+|+|..+++++++ +++
T Consensus 2 ~~~~~~~gk~~~~~~~~~~~i~~~k~~i~~~~~~~~~~q~~~~~~~~l~d~~~l~~~~i~~~~~~~l~~~~~ 73 (75)
T KOG0001|consen 2 IFVKTLDGKTITLEVSPSDTIEVVKAKIRDKEGIPVDQQRLIFGGKPLEDGRTLADYNIQEGSTLHLVLSLR 73 (75)
T ss_pred EEEEecCCCEEEEEecCCCHHHHHHHHHHhhcCCCCeeEEEEECCEECcCCCcHHHhCCCCCCEEEEEEecC
Confidence 57888899999999999999999999999999999999999999999999999999999999999998 654
No 65
>cd01789 Alp11_N Ubiquitin-like domain of Alp11 tubulin-folding cofactor B. Alp11, also known as tubulin-folding cofactor B, is one of at least three proteins required for the proper folding of tubulins prior to their incorporation into microtubules. These cofactors are necessary for the biogenesis of microtubules and for cell viability. Alp11 has three domains including an N-terminal ubiquitin-like domain (represented by this CD) which executes the essential function, a central coiled-coil domain necessary for maintenance of cellular alpha-tubulin levels, and a C-terminal CLIP-170 domain is required for efficient binding to alpha-tubulin.
Probab=98.64 E-value=1.4e-07 Score=83.29 Aligned_cols=70 Identities=16% Similarity=0.358 Sum_probs=59.2
Q ss_pred eEEEEEecC-CceEEEEcCCCCcHHHHHHHHhhhhCCCCCCeEE-EECCe-----ec-CCCccccccCCCCCCEEEEe
Q psy15035 605 LMINIKSNT-GNTVCVNLDPASDIRNVKEMIAPKLGLKYEEVKI-IFAGK-----EL-EDTTIISECDLGQQSILHAV 674 (816)
Q Consensus 605 M~V~Vk~~~-g~t~~v~V~~~~TV~~LK~~I~~~~Gip~~~qrL-if~Gk-----~L-~d~~tL~~~~I~~~stl~lv 674 (816)
+.|+|+... .......+++++||.+||++++..+|+||..|+| +|.|+ .| +|+.+|++||+++|.+||++
T Consensus 2 v~v~i~~~~~~~~~ekr~~~~~Tv~~lK~kl~~~~G~~~~~mrL~l~~~~~~~~~~l~~d~~~L~~y~~~dg~~IhVv 79 (84)
T cd01789 2 VTVNITSSADSFSFEKKYSRGLTIAELKKKLELVVGTPASSMRLQLFDGDDKLVSKLDDDDALLGSYPVDDGCRIHVI 79 (84)
T ss_pred EEEEEEeCCCceeeeEecCCCCcHHHHHHHHHHHHCCCccceEEEEEcCCCCeEeecCCCccEeeeccCCCCCEEEEE
Confidence 456776643 2334445999999999999999999999999999 58888 56 68889999999999999999
No 66
>KOG4574|consensus
Probab=98.52 E-value=4.3e-07 Score=105.74 Aligned_cols=237 Identities=11% Similarity=0.075 Sum_probs=171.1
Q ss_pred HHHHHHHHHhHHHHHhhcCcchhHHHHHHHhcCCHHHHHHHHHHHhHHHHHHhhCcCchHHHHHHHHhcCCHHHHHHHHH
Q psy15035 25 MKKDIVKELLPFTVAMIKSKYSNALVKHMLKSGDENTKNEIIKALQPHVVTLLSHTTASPVLMYAHDQVASPAQKLAMRQ 104 (816)
Q Consensus 25 qR~~I~~EL~~~i~eL~~d~yg~~vVQKlL~~gs~eqr~~Ii~e~~g~v~~L~~h~~G~~VVqk~~~~~at~eQr~~Li~ 104 (816)
+...+.-+..+...+|.-|=-||-|+||++++++.-.++.+...--..+..+..|+||.++.|++++..-++.|...+.+
T Consensus 536 Eied~ai~mLDe~~elsSdylGNtVvqkfFe~sS~~ik~aml~r~s~ylts~gvHknGtw~~qk~ik~a~te~qik~iv~ 615 (1007)
T KOG4574|consen 536 EIEDLAILMLDELPELSSDYLGNTVVQKFFELSSDIIKDAMLRRGSKYLTSMGVHKNGTWACQKIIKMAFTERQIKLIVR 615 (1007)
T ss_pred hHHHHHHHHhccCCcchhhhhcchhhHHHHhhccHHHHHHHHhhhhhhhhhccccccchHHHHHHHHHhhchhhhheeee
Confidence 44445556667778888888999999999999999899998888888889999999999999999975555555555444
Q ss_pred HHhcCcceeeccC-CcchhHHhhcCChhHHHHHHHHHHHHHHHhhhhhcccCCcchhhhHHHhhhcCCChhhHHHHHHHh
Q psy15035 105 ELYGGLYESTGDK-KINCLGDIFEQSPEMKTAILSVTKKTILKSLQKTQVTGSALLHAVLLDFISHSSDSPDLMEVLEML 183 (816)
Q Consensus 105 e~yg~~~~l~kd~-~~~~l~~ile~~pekk~~Il~~l~~~l~~lv~K~~~~~~~ivh~vl~ey~~~~~~~~~~~~iie~l 183 (816)
-.-...-.+++|. +++++|++|.-.-.....|++.+..+...++|. ..|..-+-.++.- .++.. ++....++.+
T Consensus 616 g~dpyc~~l~~dqfgnyvaqd~LkF~fp~nsFVfE~v~s~~~~ivQs--rfGsravrAcle~--lNa~~-e~qsl~~~s~ 690 (1007)
T KOG4574|consen 616 GVDPYCTPLLNDQFGNYVAQDSLKFGFPWNSFVFESVFSHFWDIVQS--RFGSRAVRACLEA--LNANT-EDQSLVRESC 690 (1007)
T ss_pred ccCcchhhHHHHhhcceeeeeehhccCccchHHHHHHHHHHHHHHHH--hhhhHHHHHHHHH--hccCc-hhhhhhhhhh
Confidence 3333334445555 789999999875556677889999999888888 5665544444322 23444 5555555554
Q ss_pred CCCCccccccCcChHHHHHHHHhhcCHHHHHHHH-HHHHHHHHHHhhCcCchHHHHHHHccCCchHHHHHHHHHHHHHhH
Q psy15035 184 APLPLLPFVHSKAGASVAMHIIWNATNKLKKKIV-KELKGHLREVATSEFGHLVLVTLLDNVDDTLLLKKALLPELLAEV 262 (816)
Q Consensus 184 ~~~~l~~L~~tk~Gs~Vv~~cl~~~~~kdRk~Ii-k~lk~~v~~La~d~~G~~Vlq~~l~~~DDt~l~~k~Iv~eL~~~l 262 (816)
.=.-.-.++..-.|...+..++..+.--.|..++ ..+-+++.++|.|+-|+.+++++++...|.+ .++.|++ ++
T Consensus 691 iIs~ss~latnsng~llvtw~lDns~~~nrh~~l~~~lt~el~~lC~h~Lgsttv~Kl~n~~qepv-s~ekii~----hl 765 (1007)
T KOG4574|consen 691 IISKSSYLATNSNGLLLVTWLLDNSSLPNRHTILAHGLTKELVMLCFHKLGSTTVLKLLNLRQEPV-SREKIIE----HL 765 (1007)
T ss_pred hhhchhhhhhcCccceeeeeecccccccchhhHHhhhhhhccchhhhhhccchhhhhhhhcCCChH-HHHHHHH----HH
Confidence 4221456777888999999999888766666544 3345899999999999999999999887776 3555554 45
Q ss_pred HhHhcChhh
Q psy15035 263 VPLANHEYG 271 (816)
Q Consensus 263 ~~L~~d~yG 271 (816)
..+...+-+
T Consensus 766 f~~~n~kd~ 774 (1007)
T KOG4574|consen 766 FHLRNFKDS 774 (1007)
T ss_pred hhccccccc
Confidence 545444444
No 67
>KOG0894|consensus
Probab=98.47 E-value=1.4e-07 Score=94.00 Aligned_cols=67 Identities=13% Similarity=0.034 Sum_probs=57.3
Q ss_pred hhhHHHHHHHhhhcCCCCCcceeccccCCCCcccceEEEEeCCCCCCCCCcchhhhhchhhhhhhhhhhhe
Q psy15035 525 RNFRLLEELEHGQRGVGDGTISWGLENDDDMTLTHWTGMIIGPPRTSTTGHIMDTIIGYIMSVLNEILHLF 595 (816)
Q Consensus 525 ~~~~l~~el~~~~~~~~~~~~s~gl~~~~d~~l~~w~~~i~GP~~t~~e~~~~~l~i~f~~~yp~~~p~~~ 595 (816)
...||++|+..++|+|.+. +-+ .+...++.+|.=.|-||++|||+||.|--++.||++||.+||.+-
T Consensus 6 a~kRl~keY~~l~k~Pv~~-i~A---~P~p~nILEWHYvl~GpedTPy~GG~YhGkl~FP~eyP~KPPaI~ 72 (244)
T KOG0894|consen 6 AVKRLQKEYRALCKDPVPY-IVA---RPNPNNILEWHYVLRGPEDTPYYGGYYHGKLIFPPEYPFKPPAIT 72 (244)
T ss_pred HHHHHHHHHHHHHhCCchh-hcc---CCCccceeeeEEEeeCCCCCCccCceeeeEEeCCCCCCCCCCeeE
Confidence 4689999999999997666 443 344445569999999999999999999999999999999999873
No 68
>PF00806 PUF: Pumilio-family RNA binding repeat; InterPro: IPR001313 The drosophila pumilio gene codes for an unusual protein that binds through the Puf domain that usually occurs as a tandem repeat of eight domains. The FBF-2 protein of Caenorhabditis elegans also has a Puf domain. Both proteins function as translational repressors in early embryonic development by binding sequences in the 3' UTR of target mRNAs [, ]. The same type of repetitive domain has been found in in a number of other proteins from all eukaryotic kingdoms. The Puf proteins characterised to date have been reported to bind to 3'-untranslated region (UTR) sequences encompassing a so-called UGUR tetranucleotide motif and thereby to repress gene expression by affecting mRNA translation or stability. In Saccharomyces cerevisiae (Baker's yeast), five proteins, termed Puf1p to Puf5p, bear six to eight Puf repeats []. Puf3p binds nearly exclusively to cytoplasmic mRNAs that encode mitochondrial proteins; Puf1p and Puf2p interact preferentially with mRNAs encoding membrane-associated proteins; Puf4p preferentially binds mRNAs encoding nucleolar ribosomal RNA-processing factors; and Puf5p is associated with mRNAs encoding chromatin modifiers and components of the spindle pole body. This suggests the existence of an extensive network of RNA-protein interactions that coordinate the post-transcriptional fate of large sets of cytotopically and functionally related RNAs through each stage of its lifecycle.; GO: 0003723 RNA binding; PDB: 3BX2_A 4DZS_B 3BX3_B 3BWT_A 3GVT_B 3GVO_A 1IB2_A 3Q0N_A 2YJY_A 1M8Z_A ....
Probab=98.43 E-value=1.4e-07 Score=69.06 Aligned_cols=35 Identities=23% Similarity=0.362 Sum_probs=31.5
Q ss_pred HHhHHHHHhhcCcchhHHHHHHHhcCCHHHHHHHH
Q psy15035 32 ELLPFTVAMIKSKYSNALVKHMLKSGDENTKNEII 66 (816)
Q Consensus 32 EL~~~i~eL~~d~yg~~vVQKlL~~gs~eqr~~Ii 66 (816)
|+.+++.+|+.|+||||||||+|+++++++++.|+
T Consensus 1 ~i~~~~~~l~~d~~Gn~VvQk~le~~~~~~~~~il 35 (35)
T PF00806_consen 1 EIKGNLVELSKDQYGNYVVQKCLEHASPEQRQLIL 35 (35)
T ss_dssp CHTTTHHHHHTSTTHHHHHHHHHHHSSHHHHHHHH
T ss_pred ChHHHHHHHHhccccCHHHHHHHHHCCHHHHHhhC
Confidence 47889999999999999999999999999998875
No 69
>KOG0424|consensus
Probab=98.42 E-value=3.9e-07 Score=85.46 Aligned_cols=110 Identities=18% Similarity=0.174 Sum_probs=79.5
Q ss_pred hHHHHHHHhhhcCCCCCcceeccccCC-CCcccceEEEEeCCCCCCCCCcchhhhhchhhhhhhhhhhheeccCC-----
Q psy15035 527 FRLLEELEHGQRGVGDGTISWGLENDD-DMTLTHWTGMIIGPPRTSTTGHIMDTIIGYIMSVLNEILHLFWISRK----- 600 (816)
Q Consensus 527 ~~l~~el~~~~~~~~~~~~s~gl~~~~-d~~l~~w~~~i~GP~~t~~e~~~~~l~i~f~~~yp~~~p~~~~~~~~----- 600 (816)
-||++|=+...|+.+-|.+--=+...| -++++.|..+|-||.+|+||||.|.+++.||++||.+||.+. |-.-
T Consensus 7 ~rl~eErk~wrk~hp~gf~AkP~~~~dg~~nl~~Wec~IPG~~~t~wEGg~y~l~v~F~~dyP~~PPkck-F~~pl~HPN 85 (158)
T KOG0424|consen 7 NRLAEERKKWRKDHPFGFYAKPVKNADGTLNLMNWECGIPGKKGTPWEGGLYKLTVNFPDDYPSSPPKCK-FKPPLFHPN 85 (158)
T ss_pred HHHHHHHHHHhhcCCCceeeeccCCCCCcceeEEEEeecCCCCCCcCcCceEEEEEeCCccCCCCCCccc-cCCCCcCCC
Confidence 489999999998877664433332333 578999999999999999999999999999999999999874 4332
Q ss_pred --CCCceEEEEEecCCceEEEEcCCCCcHHHHHHHHhhhhCCCC
Q psy15035 601 --PDNTLMINIKSNTGNTVCVNLDPASDIRNVKEMIAPKLGLKY 642 (816)
Q Consensus 601 --~~~~M~V~Vk~~~g~t~~v~V~~~~TV~~LK~~I~~~~Gip~ 642 (816)
.+++ |.+..++.. -+=.|..||.++---|+...+-|-
T Consensus 86 Vypsgt--VcLsiL~e~---~~W~paitikqiL~gIqdLL~~Pn 124 (158)
T KOG0424|consen 86 VYPSGT--VCLSILNEE---KDWRPAITIKQILLGIQDLLDTPN 124 (158)
T ss_pred cCCCCc--Eehhhhccc---cCCCchhhHHHHHHHHHHHhcCCC
Confidence 2222 222222111 112466789999999998887664
No 70
>KOG4574|consensus
Probab=98.40 E-value=4.3e-07 Score=105.74 Aligned_cols=260 Identities=15% Similarity=0.162 Sum_probs=168.7
Q ss_pred chHHHHhhhhcCCHHHHHHHHHHHhHHHHHhhcCcchhHHHHHHHhcC-CHHHHHHHHHHHhHHHHHHhhCcCchHHHHH
Q psy15035 10 MSRIIQWLLKLSSPQMKKDIVKELLPFTVAMIKSKYSNALVKHMLKSG-DENTKNEIIKALQPHVVTLLSHTTASPVLMY 88 (816)
Q Consensus 10 ~sRvIQ~~lk~gt~eqR~~I~~EL~~~i~eL~~d~yg~~vVQKlL~~g-s~eqr~~Ii~e~~g~v~~L~~h~~G~~VVqk 88 (816)
|=-|+|+.+++++.-.+++........+..+..++||.+..||+++.. ++-|...|+.-..+....|+.+.||+||+|+
T Consensus 557 GNtVvqkfFe~sS~~ik~aml~r~s~ylts~gvHknGtw~~qk~ik~a~te~qik~iv~g~dpyc~~l~~dqfgnyvaqd 636 (1007)
T KOG4574|consen 557 GNTVVQKFFELSSDIIKDAMLRRGSKYLTSMGVHKNGTWACQKIIKMAFTERQIKLIVRGVDPYCTPLLNDQFGNYVAQD 636 (1007)
T ss_pred cchhhHHHHhhccHHHHHHHHhhhhhhhhhccccccchHHHHHHHHHhhchhhhheeeeccCcchhhHHHHhhcceeeee
Confidence 445999999999999888888888889999999999999999999986 7778899999999999999999999999999
Q ss_pred HHHhcCCHHHHHHHHHHHhcCcceeecc-CCcchhHHhhcC---ChhHHHHHHHHHHHHHHHhhhhhcccCCcchhhhHH
Q psy15035 89 AHDQVASPAQKLAMRQELYGGLYESTGD-KKINCLGDIFEQ---SPEMKTAILSVTKKTILKSLQKTQVTGSALLHAVLL 164 (816)
Q Consensus 89 ~~~~~at~eQr~~Li~e~yg~~~~l~kd-~~~~~l~~ile~---~pekk~~Il~~l~~~l~~lv~K~~~~~~~ivh~vl~ 164 (816)
.++-+-..- ..++++.|.+...+.+. -+.+.+..+|+. .++......+.+.-.......- ...|--++-..+
T Consensus 637 ~LkF~fp~n--sFVfE~v~s~~~~ivQsrfGsravrAcle~lNa~~e~qsl~~~s~iIs~ss~lat-nsng~llvtw~l- 712 (1007)
T KOG4574|consen 637 SLKFGFPWN--SFVFESVFSHFWDIVQSRFGSRAVRACLEALNANTEDQSLVRESCIISKSSYLAT-NSNGLLLVTWLL- 712 (1007)
T ss_pred ehhccCccc--hHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhccCchhhhhhhhhhhhhchhhhhh-cCccceeeeeec-
Confidence 986322221 22334444444434433 266677777775 5566666555554432222221 233333332222
Q ss_pred HhhhcCCChhhHHHHHHHhCCCCccccccCcChHHHHHHHHhhcCHHH-HHHHHHHHHH---------------------
Q psy15035 165 DFISHSSDSPDLMEVLEMLAPLPLLPFVHSKAGASVAMHIIWNATNKL-KKKIVKELKG--------------------- 222 (816)
Q Consensus 165 ey~~~~~~~~~~~~iie~l~~~~l~~L~~tk~Gs~Vv~~cl~~~~~kd-Rk~Iik~lk~--------------------- 222 (816)
.++.-......++.-+.+. +..++.++-|+-++++++.+..+.. |+.|++.|-.
T Consensus 713 ---Dns~~~nrh~~l~~~lt~e-l~~lC~h~Lgsttv~Kl~n~~qepvs~ekii~hlf~~~n~kd~~lt~Vl~~~~~gpm 788 (1007)
T KOG4574|consen 713 ---DNSSLPNRHTILAHGLTKE-LVMLCFHKLGSTTVLKLLNLRQEPVSREKIIEHLFHLRNFKDSALTEVLTEANYGPM 788 (1007)
T ss_pred ---ccccccchhhHHhhhhhhc-cchhhhhhccchhhhhhhhcCCChHHHHHHHHHHhhccccccchhhhhhhhhccccc
Confidence 2221113334555556678 9999999999999999999887666 8888887741
Q ss_pred ---------HHHHHhhCcCchHHHHHHHccCCchHHHHHHHHHHHHHhHHhHhcChhhHHHHHHhhcc
Q psy15035 223 ---------HLREVATSEFGHLVLVTLLDNVDDTLLLKKALLPELLAEVVPLANHEYGRKVIAHLVSW 281 (816)
Q Consensus 223 ---------~v~~La~d~~G~~Vlq~~l~~~DDt~l~~k~Iv~eL~~~l~~L~~d~yG~~Vl~~Ll~~ 281 (816)
.+...-.++|+.+|.+.|++.-- + .-..+..|.+.+--++..+||.+-++.++.-
T Consensus 789 fiikvi~~p~iel~f~dQf~kvvrq~il~~~a--~--~narv~~LleevgliSasksgs~s~q~~~ss 852 (1007)
T KOG4574|consen 789 FIIKVITKPTIELAFRDQFIKVVRQVILNSPA--V--SNARVQRLLEEVGLISASKSGSQSIQMHISS 852 (1007)
T ss_pred eeeeeeccccchHHHHHHHHHHHHHHHHhcCC--c--cHHHHHHHHHHHhhhccccchhHHHHhhhcc
Confidence 22333345555555555554321 1 1112244555555555566666666555543
No 71
>KOG0422|consensus
Probab=98.40 E-value=1.1e-07 Score=88.56 Aligned_cols=107 Identities=18% Similarity=0.212 Sum_probs=73.7
Q ss_pred hhhHHHHHHHhhhcCCCCCcceeccccCCCCcccceEEEEeCCCCCCCCCcchhhhhchhhhhhhhhhhheeccCCCCCc
Q psy15035 525 RNFRLLEELEHGQRGVGDGTISWGLENDDDMTLTHWTGMIIGPPRTSTTGHIMDTIIGYIMSVLNEILHLFWISRKPDNT 604 (816)
Q Consensus 525 ~~~~l~~el~~~~~~~~~~~~s~gl~~~~d~~l~~w~~~i~GP~~t~~e~~~~~l~i~f~~~yp~~~p~~~~~~~~~~~~ 604 (816)
...||.+||++++++.... +-.- ..+|.++..|+|.|+ |+..||..|+|++.|+||.+||++||.+- |-.++
T Consensus 3 a~~Rl~kEL~dl~~~~~~~-~rn~--~~~e~nll~wt~lli-pd~ppY~kgaF~l~I~fp~eYPFKPP~i~-f~tki--- 74 (153)
T KOG0422|consen 3 APRRLRKELADLQKNKMKF-FRNI--EVDEANLLKWTGLLI-PDKPPYNKGAFRLEIDFPVEYPFKPPKIK-FKTKI--- 74 (153)
T ss_pred hhHHHHHHHHHHHhccHHH-Hhhh--hcccccceeEEeEec-CCCCCccCcceEEEeeCCCCCCCCCCeee-eeeee---
Confidence 3579999999999885442 3322 345667789999998 99999999999999999999999999984 43320
Q ss_pred eEEEEEecCCce----EEEE-cCCCCcHHHHHHHHhhhhCC
Q psy15035 605 LMINIKSNTGNT----VCVN-LDPASDIRNVKEMIAPKLGL 640 (816)
Q Consensus 605 M~V~Vk~~~g~t----~~v~-V~~~~TV~~LK~~I~~~~Gi 640 (816)
..-.|-- .|+. +..+ -.|.++.+++-+.+-....-
T Consensus 75 YHpNVDe-~gqvClPiis~EnWkP~T~teqVlqaLi~liN~ 114 (153)
T KOG0422|consen 75 YHPNVDE-KGQVCLPIISAENWKPATRTEQVLQALIALIND 114 (153)
T ss_pred ccCCCCC-CCceeeeeeecccccCcccHHHHHHHHHHHhcC
Confidence 0111211 2442 1122 22677888888777666543
No 72
>PLN02560 enoyl-CoA reductase
Probab=98.38 E-value=6.5e-07 Score=97.59 Aligned_cols=70 Identities=14% Similarity=0.312 Sum_probs=63.3
Q ss_pred eEEEEEecCCceE---EEEcCCCCcHHHHHHHHhhhhCC-CCCCeEEEE---CCe----ecCCCccccccCCCCCCEEEE
Q psy15035 605 LMINIKSNTGNTV---CVNLDPASDIRNVKEMIAPKLGL-KYEEVKIIF---AGK----ELEDTTIISECDLGQQSILHA 673 (816)
Q Consensus 605 M~V~Vk~~~g~t~---~v~V~~~~TV~~LK~~I~~~~Gi-p~~~qrLif---~Gk----~L~d~~tL~~~~I~~~stl~l 673 (816)
|+|+|+..+|+.+ ++++++++||+|||++|+++.++ ++++|||++ .|+ .|+|+.+|+++|+++|++|++
T Consensus 1 M~I~Vk~~~Gk~i~~~~lev~~~aTV~dLK~~Isk~~~~~~~~RqRL~~~~~~gk~~g~~L~d~ktL~d~gv~~gstLy~ 80 (308)
T PLN02560 1 MKVTVVSRSGREIIKGGLEVPDSATVADLKKAIHKRKKKYYPSRQRLTLPLPPGKTRPTVLDDSKSLKDYGLGDGGTVVF 80 (308)
T ss_pred CEEEEEcCCCCeecceeEEcCCCCcHHHHHHHHHHHcCCCChhheEEEEecCCCCcCccccCCCCCHHhcCCCCCceEEE
Confidence 7899998889887 79999999999999999999987 899999998 343 789999999999999999877
Q ss_pred e
Q psy15035 674 V 674 (816)
Q Consensus 674 v 674 (816)
-
T Consensus 81 k 81 (308)
T PLN02560 81 K 81 (308)
T ss_pred E
Confidence 6
No 73
>KOG0428|consensus
Probab=98.38 E-value=2.9e-07 Score=93.11 Aligned_cols=69 Identities=22% Similarity=0.158 Sum_probs=59.6
Q ss_pred cchhhhHHHHHHHhhhcCCCCCcceeccccCCCCcccceEEEEeCCCCCCCCCcchhhhhchhhhhhhhhhhhe
Q psy15035 522 IVPRNFRLLEELEHGQRGVGDGTISWGLENDDDMTLTHWTGMIIGPPRTSTTGHIMDTIIGYIMSVLNEILHLF 595 (816)
Q Consensus 522 ~vp~~~~l~~el~~~~~~~~~~~~s~gl~~~~d~~l~~w~~~i~GP~~t~~e~~~~~l~i~f~~~yp~~~p~~~ 595 (816)
+-|...||++|-.|++ +|.|..-+. +-+.+|++|.=+|=||++|-||||+|.-+|.||.+||.+||.++
T Consensus 9 KnpaVkRlmkEa~El~-~Ptd~yha~----plEdNlFEWhFtiRGp~dtdFeGGiYHGRI~lPadYPmKPPs~i 77 (314)
T KOG0428|consen 9 KNPAVKRLMKEAAELK-DPTDHYHAQ----PLEDNLFEWHFTIRGPPDTDFEGGIYHGRIVLPADYPMKPPSII 77 (314)
T ss_pred cCHHHHHHHHHHHHhc-Cchhhhhhc----cchhceeeEEEEeeCCCCCCccCceeeeeEecCCCCCCCCCeEE
Confidence 4678899999999998 777775443 33346789999999999999999999999999999999999886
No 74
>KOG4248|consensus
Probab=98.36 E-value=6.3e-07 Score=106.85 Aligned_cols=73 Identities=19% Similarity=0.420 Sum_probs=69.8
Q ss_pred EEEEEecCCceEEEEcCCCCcHHHHHHHHhhhhCCCCCCeEEEECCeecCCCccccccCCCCCCEEEEe-eCCCC
Q psy15035 606 MINIKSNTGNTVCVNLDPASDIRNVKEMIAPKLGLKYEEVKIIFAGKELEDTTIISECDLGQQSILHAV-KSSPE 679 (816)
Q Consensus 606 ~V~Vk~~~g~t~~v~V~~~~TV~~LK~~I~~~~Gip~~~qrLif~Gk~L~d~~tL~~~~I~~~stl~lv-r~~gg 679 (816)
.|.|||++.++.++.|...+||.+||..|.++..|+.+.|||||.|+.|.|++++++|+| +|-+|||+ |.+++
T Consensus 4 ~v~vktld~r~~t~~ig~q~ti~~~~d~~r~~~ni~s~~qr~i~~grvl~~~k~vq~~~v-dgk~~hlverppp~ 77 (1143)
T KOG4248|consen 4 NVLVKTLDSRTRTFIIGAQMTIKEFKDHIRASVNIPSEKQRLIYQGRVLQDDKKVQEYNV-DGKVIHLVERPPPQ 77 (1143)
T ss_pred ceeeeecccceeEEEechHHHHHHHHHHHHHhcccccccceeeecceeeccchhhhhccC-CCeEEEeeccCCCC
Confidence 389999999999999999999999999999999999999999999999999999999999 99999999 86655
No 75
>PF14560 Ubiquitin_2: Ubiquitin-like domain; PDB: 1WJN_A 2KJ6_A 2KJR_A 1V6E_A 1T0Y_A.
Probab=98.31 E-value=1.8e-06 Score=76.86 Aligned_cols=70 Identities=14% Similarity=0.295 Sum_probs=57.9
Q ss_pred eEEEEEecCC--ceEEEEcCCCCcHHHHHHHHhhhhCCCCCCeEEEEC----C---eec-CCCccccccCCCCCCEEEEe
Q psy15035 605 LMINIKSNTG--NTVCVNLDPASDIRNVKEMIAPKLGLKYEEVKIIFA----G---KEL-EDTTIISECDLGQQSILHAV 674 (816)
Q Consensus 605 M~V~Vk~~~g--~t~~v~V~~~~TV~~LK~~I~~~~Gip~~~qrLif~----G---k~L-~d~~tL~~~~I~~~stl~lv 674 (816)
++|+|..... ......+++++||.+||.+++..+|+|++.|+|.+. | ..+ +|.++|++||+.+|.+||++
T Consensus 2 v~l~It~~~~~~~~~ekr~~~~~Tv~eLK~kl~~~~Gi~~~~m~L~l~~~~~~~~~~~~~dd~~~L~~y~~~dg~~i~V~ 81 (87)
T PF14560_consen 2 VKLFITSSNSKQRSVEKRFPKSITVSELKQKLEKLTGIPPSDMRLQLKSDKDDSKIEELDDDDATLGSYGIKDGMRIHVV 81 (87)
T ss_dssp EEEEEEESSSSSSEEEEEEETTSBHHHHHHHHHHHHTS-TTTEEEEEE-TSSSSEEEESSGSSSBCCHHT-STTEEEEEE
T ss_pred EEEEEEeCCCCCeeEEEEcCCCCCHHHHHHHHHHHhCCCcccEEEEEEecCCCccccccCCCccEeecCCCCCCCEEEEE
Confidence 4678877654 477888999999999999999999999999999765 2 223 57899999999999999999
No 76
>PF13881 Rad60-SLD_2: Ubiquitin-2 like Rad60 SUMO-like; PDB: 1SE9_A 1WGH_A 2GOW_A.
Probab=98.26 E-value=6.2e-06 Score=76.56 Aligned_cols=73 Identities=23% Similarity=0.498 Sum_probs=55.5
Q ss_pred eEEEEEecCCc-eEEEEcCCCCcHHHHHHHHhhhh-------CCCCCCeEEEECCeecCCCccccccCCCCCC------E
Q psy15035 605 LMINIKSNTGN-TVCVNLDPASDIRNVKEMIAPKL-------GLKYEEVKIIFAGKELEDTTIISECDLGQQS------I 670 (816)
Q Consensus 605 M~V~Vk~~~g~-t~~v~V~~~~TV~~LK~~I~~~~-------Gip~~~qrLif~Gk~L~d~~tL~~~~I~~~s------t 670 (816)
+.+.++..+|. +-++..++++||++||+.|.... -..+..+||||.||.|+|..||++|.+..+. +
T Consensus 3 i~lkf~l~~G~d~~~~~~~~~~TV~~lKe~i~~~WP~d~~~~p~s~~~lRLI~~GriL~d~~tL~~~~~~~~~~~~~~~v 82 (111)
T PF13881_consen 3 IELKFRLADGKDIGPFRFDPSTTVADLKERIWAEWPEDWEERPKSPSDLRLIYAGRILEDNKTLSDCRLPSGETPGGPTV 82 (111)
T ss_dssp EEEEEEETTS-EEEEEEE-TTSBHHHHHHHHHHSSSTTSSSTT-SGGGEEEEETTEEE-SSSBTGGGT--TTSETT--EE
T ss_pred EEEEEEEeCCCcccccccCccChHHHHHHHHHHHCccccccCCCChhhEEEEeCCeecCCcCcHHHhCCCCCCCCCCCEE
Confidence 45666777898 78899999999999999999764 2355679999999999999999999987755 6
Q ss_pred EEEe-eCC
Q psy15035 671 LHAV-KSS 677 (816)
Q Consensus 671 l~lv-r~~ 677 (816)
+||+ |..
T Consensus 83 mHlvvrp~ 90 (111)
T PF13881_consen 83 MHLVVRPN 90 (111)
T ss_dssp EEEEE-SS
T ss_pred EEEEecCC
Confidence 8888 644
No 77
>cd01788 ElonginB Ubiquitin-like domain of Elongin B. Elongin B is part of an E3 ubiquitin ligase complex called VEC that activates ubiquitylation by the E2 ubiquitin-conjugating enzyme Ubc5. VEC is composed of von Hippel-Lindau tumor suppressor protein (pVHL), elongin C, cullin 2, NEDD8, and Rbx1. ElonginB binds elonginC to form the elonginBC complex which is a positive regulator of RNA polymerase II elongation factor Elongin A. The BC complex then binds VHL (von Hippel-Lindau) tumour suppressor protein to form a VCB ternary complex. Elongin B has a ubiquitin-llike domain.
Probab=98.25 E-value=2.4e-06 Score=77.72 Aligned_cols=75 Identities=12% Similarity=0.248 Sum_probs=61.7
Q ss_pred eEEEEEecC-CceEEEEcCCCCcHHHHHHHHhhhhCCCCCCeEEEECCeecCCCccccccCC-------CCCCEEEEe-e
Q psy15035 605 LMINIKSNT-GNTVCVNLDPASDIRNVKEMIAPKLGLKYEEVKIIFAGKELEDTTIISECDL-------GQQSILHAV-K 675 (816)
Q Consensus 605 M~V~Vk~~~-g~t~~v~V~~~~TV~~LK~~I~~~~Gip~~~qrLif~Gk~L~d~~tL~~~~I-------~~~stl~lv-r 675 (816)
|.+|++-.- -.|+.+++.++.||.+||++|+.....||++|+|+-.+..|+|+.||++||+ +...+|-|. |
T Consensus 1 MdvFlmIrR~KTTiF~dakes~tVlelK~~iegI~k~pp~dQrL~kd~qvLeD~kTL~d~g~t~~~akaq~pA~vgLa~r 80 (119)
T cd01788 1 MDVFLMIRRHKTTIFTDAKESTTVYELKRIVEGILKRPPEDQRLYKDDQLLDDGKTLGDCGFTSQTARPQAPATVGLAFR 80 (119)
T ss_pred CceEEEEEecceEEEeecCCcccHHHHHHHHHHHhcCChhHheeecCceeecccccHHHcCccccccccCCCCeEEEEEe
Confidence 334444432 3467899999999999999999999999999999977788999999999999 668888888 7
Q ss_pred CCCC
Q psy15035 676 SSPE 679 (816)
Q Consensus 676 ~~gg 679 (816)
...|
T Consensus 81 ~~d~ 84 (119)
T cd01788 81 SSDD 84 (119)
T ss_pred cCCC
Confidence 5433
No 78
>smart00025 Pumilio Pumilio-like repeats. Pumilio-like repeats that bind RNA.
Probab=98.12 E-value=1.6e-06 Score=63.14 Aligned_cols=34 Identities=24% Similarity=0.501 Sum_probs=31.2
Q ss_pred HhHHHHHhhcCcchhHHHHHHHhcCCHHHHHHHH
Q psy15035 33 LLPFTVAMIKSKYSNALVKHMLKSGDENTKNEII 66 (816)
Q Consensus 33 L~~~i~eL~~d~yg~~vVQKlL~~gs~eqr~~Ii 66 (816)
+++++.+|+.|+||+|||||+|+++++.+|..|+
T Consensus 2 ~~~~~~~l~~~~~g~~viqk~l~~~~~~~~~~i~ 35 (36)
T smart00025 2 IKGHLLELSKDQYGNRVVQKLLEHASESQREQII 35 (36)
T ss_pred chHHHHHHHhcchhhHHHHHHHHHCCHHHHHHhh
Confidence 5789999999999999999999999999988876
No 79
>KOG0427|consensus
Probab=98.08 E-value=2.3e-06 Score=78.77 Aligned_cols=106 Identities=21% Similarity=0.271 Sum_probs=75.9
Q ss_pred hhhhHHHHHHHhhhcCCCCCcceeccccCCCCcccceEEEEeCCCCCCCCCcchhhhhchhhhhhhhhhhheeccCCCCC
Q psy15035 524 PRNFRLLEELEHGQRGVGDGTISWGLENDDDMTLTHWTGMIIGPPRTSTTGHIMDTIIGYIMSVLNEILHLFWISRKPDN 603 (816)
Q Consensus 524 p~~~~l~~el~~~~~~~~~~~~s~gl~~~~d~~l~~w~~~i~GP~~t~~e~~~~~l~i~f~~~yp~~~p~~~~~~~~~~~ 603 (816)
....||++||.++|-+++.| +-. +-. ++|+.|..-+.|-|+|.|+|..|++.++||+.||...|.++ |... .
T Consensus 15 ~at~RLqKEl~e~q~~pP~G-~~~---~v~-dnlqqWii~v~Ga~GTLYa~e~~qLq~~F~~~YP~esPqVm-F~~~--~ 86 (161)
T KOG0427|consen 15 IATNRLQKELSEWQNNPPTG-FKH---RVT-DNLQQWIIEVTGAPGTLYANETYQLQVEFPEHYPMESPQVM-FVGP--A 86 (161)
T ss_pred HHHHHHHHHHHHHhcCCCCc-cee---ecc-cchheeEEEEecCCceeecCcEEEEEEecCCCCCCCCCeEE-EecC--C
Confidence 44679999999999887777 343 233 36789999999999999999999999999999999888887 5443 2
Q ss_pred ceEEEEEecCCceEEEEc-----CCCCcHHHHHHHHhhhhC
Q psy15035 604 TLMINIKSNTGNTVCVNL-----DPASDIRNVKEMIAPKLG 639 (816)
Q Consensus 604 ~M~V~Vk~~~g~t~~v~V-----~~~~TV~~LK~~I~~~~G 639 (816)
...-.|=. +|+ +.+++ .|..+|..+=-.|-.-..
T Consensus 87 P~HPHiYS-NGH-ICL~iL~d~WsPAmsv~SvClSIlSMLS 125 (161)
T KOG0427|consen 87 PLHPHIYS-NGH-ICLDILYDSWSPAMSVQSVCLSILSMLS 125 (161)
T ss_pred CCCCceec-CCe-EEEEeecccCCcchhhHHHHHHHHHHHc
Confidence 22234423 455 44543 355577776555544443
No 80
>cd01801 Tsc13_N Ubiquitin-like domain of Tsc13. Tsc13_N N-terminal domain of Tsc13. Tsc13 is an enoyl reductase involved in elongation of long chain fatty acids that localizes to the endoplasmic reticulum and is highly enriched in a novel structure marking nuclear-vacuolar junctions.
Probab=97.98 E-value=1.3e-05 Score=69.61 Aligned_cols=52 Identities=21% Similarity=0.307 Sum_probs=47.4
Q ss_pred CCCCcHHHHHHHHhhhhC-CCCCCeEEE--ECCeecCCCccccccCCCCCCEEEE
Q psy15035 622 DPASDIRNVKEMIAPKLG-LKYEEVKII--FAGKELEDTTIISECDLGQQSILHA 673 (816)
Q Consensus 622 ~~~~TV~~LK~~I~~~~G-ip~~~qrLi--f~Gk~L~d~~tL~~~~I~~~stl~l 673 (816)
+++.||++||..|++..+ +++++|||. +.|+.|.|+.+|.+||+.+|++|++
T Consensus 20 ~~~aTV~dlk~~i~~~~~~~~~~Rqrl~~~~~g~~L~d~~tL~~~gv~~g~~lyv 74 (77)
T cd01801 20 SGDATIADLKKLIAKSSPQLTVNRQSLRLEPKGKSLKDDDTLVDLGVGAGATLYV 74 (77)
T ss_pred CCCccHHHHHHHHHHHcCCCCcceeEEEeCCCCcccCCcccHhhcCCCCCCEEEE
Confidence 588999999999999976 589999884 8999999999999999999999886
No 81
>PF11543 UN_NPL4: Nuclear pore localisation protein NPL4; InterPro: IPR024682 Npl4, along with Ufd1, forms the heterodimer adaptor complex UN, which is involved in the recruitment of p97, an AAA ATPase, for tasks involving the ubiquitin pathway. Npl4 has a N-terminal ubiquitin-like domain which has within its structure a beta-grasp fold with a helical insert []. This entry represents the ubiquitin-like domain.; PDB: 2PJH_A 1WF9_A.
Probab=97.97 E-value=8.4e-06 Score=71.29 Aligned_cols=73 Identities=19% Similarity=0.345 Sum_probs=44.1
Q ss_pred CCCceEEEEEecCCceEEEEcCCCCcHHHHHHHHhhhhCCCCCCeEEEEC---Ceec--CCCccccccCCCCCCEEEEe
Q psy15035 601 PDNTLMINIKSNTGNTVCVNLDPASDIRNVKEMIAPKLGLKYEEVKIIFA---GKEL--EDTTIISECDLGQQSILHAV 674 (816)
Q Consensus 601 ~~~~M~V~Vk~~~g~t~~v~V~~~~TV~~LK~~I~~~~Gip~~~qrLif~---Gk~L--~d~~tL~~~~I~~~stl~lv 674 (816)
|.++|.|.||+.+|. +.|++++++|+.+|+++|++..++|.+.|.|..+ ...+ .++.||+++||+.|+.|+|.
T Consensus 1 ~~~~milRvrS~dG~-~Rie~~~~~t~~~L~~kI~~~l~~~~~~~~L~~~~~~~~~l~s~~~~tl~~lglkHGdmlyL~ 78 (80)
T PF11543_consen 1 MASSMILRVRSKDGM-KRIEVSPSSTLSDLKEKISEQLSIPDSSQSLSKDRNNKEELKSSDSKTLSSLGLKHGDMLYLK 78 (80)
T ss_dssp -----EEEEE-SSEE-EEEEE-TTSBHHHHHHHHHHHS---TTT---BSSGGGGGCSSS-TT-CCCCT---TT-EEE--
T ss_pred CCccEEEEEECCCCC-EEEEcCCcccHHHHHHHHHHHcCCCCcceEEEecCCCCcccccCCcCCHHHcCCCCccEEEEe
Confidence 457899999997664 6799999999999999999999999999888532 1344 47889999999999999875
No 82
>cd00196 UBQ Ubiquitin-like proteins. Ubiquitin homologs; Includes ubiquitin and ubiquitin-like proteins. Ubiquitin-mediated proteolysis is part of the regulated turnover of proteins required for controlling cell cycle progression. Other family members are protein modifiers that perform a wide range of functions. Ubiquitination usually results in a covalent bond between the C-terminus of ubiquitin and the epsilon-amino group of a substrate lysine. The three-step mechanism requires an activating enzyme (E1) that forms a thiol ester with the C-terminal carboxy group, a conjugating enzyme (E2) that transiently carries the activated ubiquitin molecule as a thiol ester, and a ligase (E3) that transfers the activated ubiquitin from the E2 to the substrate lysine residue. In poly-ubiquitination, ubiquitin itself is the substrate.
Probab=97.86 E-value=5.2e-05 Score=60.49 Aligned_cols=65 Identities=31% Similarity=0.437 Sum_probs=60.2
Q ss_pred EecCCceEEEEcCCCCcHHHHHHHHhhhhCCCCCCeEEEECCeecCCCccccccCCCCCCEEEEe
Q psy15035 610 KSNTGNTVCVNLDPASDIRNVKEMIAPKLGLKYEEVKIIFAGKELEDTTIISECDLGQQSILHAV 674 (816)
Q Consensus 610 k~~~g~t~~v~V~~~~TV~~LK~~I~~~~Gip~~~qrLif~Gk~L~d~~tL~~~~I~~~stl~lv 674 (816)
+..+|....+.+.+..|+++|+..|..+.|++++.++|+++|..+.+...+.++++.++++|++.
T Consensus 3 ~~~~~~~~~~~~~~~~tv~~l~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~ 67 (69)
T cd00196 3 KLNDGKTVELLVPSGTTVADLKEKLAKKLGLPPEQQRLLVNGKILPDSLTLEDYGLQDGDELVLV 67 (69)
T ss_pred EecCCCEEEEEcCCCCcHHHHHHHHHHHHCcChHHeEEEECCeECCCCCcHHHcCCCCCCEEEEE
Confidence 34468888999999999999999999999999999999999999999998899999999999987
No 83
>PF00806 PUF: Pumilio-family RNA binding repeat; InterPro: IPR001313 The drosophila pumilio gene codes for an unusual protein that binds through the Puf domain that usually occurs as a tandem repeat of eight domains. The FBF-2 protein of Caenorhabditis elegans also has a Puf domain. Both proteins function as translational repressors in early embryonic development by binding sequences in the 3' UTR of target mRNAs [, ]. The same type of repetitive domain has been found in in a number of other proteins from all eukaryotic kingdoms. The Puf proteins characterised to date have been reported to bind to 3'-untranslated region (UTR) sequences encompassing a so-called UGUR tetranucleotide motif and thereby to repress gene expression by affecting mRNA translation or stability. In Saccharomyces cerevisiae (Baker's yeast), five proteins, termed Puf1p to Puf5p, bear six to eight Puf repeats []. Puf3p binds nearly exclusively to cytoplasmic mRNAs that encode mitochondrial proteins; Puf1p and Puf2p interact preferentially with mRNAs encoding membrane-associated proteins; Puf4p preferentially binds mRNAs encoding nucleolar ribosomal RNA-processing factors; and Puf5p is associated with mRNAs encoding chromatin modifiers and components of the spindle pole body. This suggests the existence of an extensive network of RNA-protein interactions that coordinate the post-transcriptional fate of large sets of cytotopically and functionally related RNAs through each stage of its lifecycle.; GO: 0003723 RNA binding; PDB: 3BX2_A 4DZS_B 3BX3_B 3BWT_A 3GVT_B 3GVO_A 1IB2_A 3Q0N_A 2YJY_A 1M8Z_A ....
Probab=97.84 E-value=1.1e-05 Score=58.92 Aligned_cols=35 Identities=20% Similarity=0.233 Sum_probs=31.3
Q ss_pred HHhHHHHHHhhCcCchHHHHHHHHhcCCHHHHHHHH
Q psy15035 68 ALQPHVVTLLSHTTASPVLMYAHDQVASPAQKLAMR 103 (816)
Q Consensus 68 e~~g~v~~L~~h~~G~~VVqk~~~~~at~eQr~~Li 103 (816)
++.|++.+|+.|+|||||||++++ +++++|+..|+
T Consensus 1 ~i~~~~~~l~~d~~Gn~VvQk~le-~~~~~~~~~il 35 (35)
T PF00806_consen 1 EIKGNLVELSKDQYGNYVVQKCLE-HASPEQRQLIL 35 (35)
T ss_dssp CHTTTHHHHHTSTTHHHHHHHHHH-HSSHHHHHHHH
T ss_pred ChHHHHHHHHhccccCHHHHHHHH-HCCHHHHHhhC
Confidence 367899999999999999999995 69999988775
No 84
>KOG0423|consensus
Probab=97.59 E-value=2.4e-05 Score=75.35 Aligned_cols=64 Identities=19% Similarity=0.217 Sum_probs=55.0
Q ss_pred HHHHHHHhhhcCCCCCcceeccccCCCCcccceEEEEeCCCCCCCCCcchhhhhchhhhhhhhhhhhe
Q psy15035 528 RLLEELEHGQRGVGDGTISWGLENDDDMTLTHWTGMIIGPPRTSTTGHIMDTIIGYIMSVLNEILHLF 595 (816)
Q Consensus 528 ~l~~el~~~~~~~~~~~~s~gl~~~~d~~l~~w~~~i~GP~~t~~e~~~~~l~i~f~~~yp~~~p~~~ 595 (816)
.|.+||..+...|+|| +-+ +.+++ +++...+.|-||-+|||+||+|+..+.+..+||.+||+=+
T Consensus 14 ~~~kEl~~l~~~PPdG-IKV-~~Nee--D~tdiqa~IeGP~GTPYa~GlFRmKL~L~kDFP~sPPKgY 77 (223)
T KOG0423|consen 14 QLAKELKSLDESPPDG-IKV-VVNEE--DFTDIQADIEGPVGTPYANGLFRMKLALSKDFPHSPPKGY 77 (223)
T ss_pred HHHHHHHhcccCCCCc-eEE-ecChH--HhHHHHhhccCCCCCccccceeeehhhhcCCCCCCCCcce
Confidence 5689999999998988 565 33444 4468899999999999999999999999999999999865
No 85
>KOG1872|consensus
Probab=97.59 E-value=0.00011 Score=81.97 Aligned_cols=69 Identities=16% Similarity=0.141 Sum_probs=65.2
Q ss_pred eEEEEEecCCceEEEE-cCCCCcHHHHHHHHhhhhCCCCCCeEEEECCeecCCCccccccCCCCCCEEEEe
Q psy15035 605 LMINIKSNTGNTVCVN-LDPASDIRNVKEMIAPKLGLKYEEVKIIFAGKELEDTTIISECDLGQQSILHAV 674 (816)
Q Consensus 605 M~V~Vk~~~g~t~~v~-V~~~~TV~~LK~~I~~~~Gip~~~qrLif~Gk~L~d~~tL~~~~I~~~stl~lv 674 (816)
..|.||+ .|+.++++ ++.++|+..||..+...+|+||++|+++..|+.+.|+-.+....|++|.+++|+
T Consensus 4 ~~v~VKW-~gk~y~v~~l~~d~t~~vlKaqlf~LTgV~PeRQKv~vKGg~a~dd~~~~al~iKpn~~lmMm 73 (473)
T KOG1872|consen 4 DTVIVKW-GGKKYPVETLSTDETPSVLKAQLFALTGVPPERQKVMVKGGLAKDDVDWGALQIKPNETLMMM 73 (473)
T ss_pred ceEeeee-cCccccceeccCCCchHHHHHHHHHhcCCCccceeEEEecccccccccccccccCCCCEEEee
Confidence 3478888 68899998 999999999999999999999999999999999999999999999999999999
No 86
>KOG3493|consensus
Probab=97.31 E-value=8.2e-05 Score=60.62 Aligned_cols=69 Identities=17% Similarity=0.247 Sum_probs=60.5
Q ss_pred EEEEEecCCceEEEEcCCCCcHHHHHHHHhhhhCCCCCCeEEEECCeecCCCccccccCCCCCCEEEEe
Q psy15035 606 MINIKSNTGNTVCVNLDPASDIRNVKEMIAPKLGLKYEEVKIIFAGKELEDTTIISECDLGQQSILHAV 674 (816)
Q Consensus 606 ~V~Vk~~~g~t~~v~V~~~~TV~~LK~~I~~~~Gip~~~qrLif~Gk~L~d~~tL~~~~I~~~stl~lv 674 (816)
+|.+...-|+...|...+++||+|+|+.|+.++|..++...|---+..++|..+|++|.|.+|..+.+-
T Consensus 3 ev~~nDrLGKKVRvKCn~dDtiGD~KKliaaQtGT~~~kivl~k~~~i~kd~I~L~dyeihdg~~lely 71 (73)
T KOG3493|consen 3 EVVLNDRLGKKVRVKCNTDDTIGDLKKLIAAQTGTRPEKIVLKKWYTIFKDHITLSDYEIHDGMNLELY 71 (73)
T ss_pred eehhhhhcCceEEEEeCCcccccCHHHHHHHhhCCChhHhHHHhhhhhhhcccceeeEEeccCccEEEe
Confidence 456666678999999999999999999999999999998888766677899999999999999888763
No 87
>smart00025 Pumilio Pumilio-like repeats. Pumilio-like repeats that bind RNA.
Probab=97.30 E-value=0.00025 Score=51.33 Aligned_cols=34 Identities=18% Similarity=0.194 Sum_probs=30.6
Q ss_pred HhHHHHHHhhCcCchHHHHHHHHhcCCHHHHHHHH
Q psy15035 69 LQPHVVTLLSHTTASPVLMYAHDQVASPAQKLAMR 103 (816)
Q Consensus 69 ~~g~v~~L~~h~~G~~VVqk~~~~~at~eQr~~Li 103 (816)
+.|++.+|+.|+|||+|||+++ +++++.++..++
T Consensus 2 ~~~~~~~l~~~~~g~~viqk~l-~~~~~~~~~~i~ 35 (36)
T smart00025 2 IKGHLLELSKDQYGNRVVQKLL-EHASESQREQII 35 (36)
T ss_pred chHHHHHHHhcchhhHHHHHHH-HHCCHHHHHHhh
Confidence 5789999999999999999999 599988888765
No 88
>cd01811 OASL_repeat1 2'-5' oligoadenylate synthetase-like protein, repeat 1 of 2. OASL_repeat1 (2'-5' oligoadenylate synthetase-like protein) belongs to a family of interferon-induced 2'-5' oligoadenylate synthetases which are important for the antiviral activity of interferons. While each member of this famliy has a conserved N-terminal OAS catalytic domain, only OASL has two tandem ubiquitin-like repeats located at the C-terminus and this CD represents one of those repeats.
Probab=97.10 E-value=0.0021 Score=54.28 Aligned_cols=69 Identities=14% Similarity=0.241 Sum_probs=61.3
Q ss_pred eEEEEEecCCceEEEEcCCCCcHHHHHHHHhhhhCCCCCCeEEEEC---C--eecCCCccccccCCCCCCEEEEe
Q psy15035 605 LMINIKSNTGNTVCVNLDPASDIRNVKEMIAPKLGLKYEEVKIIFA---G--KELEDTTIISECDLGQQSILHAV 674 (816)
Q Consensus 605 M~V~Vk~~~g~t~~v~V~~~~TV~~LK~~I~~~~Gip~~~qrLif~---G--k~L~d~~tL~~~~I~~~stl~lv 674 (816)
++|+|+..++...++.|+|..+|..+|++|....|++- .|||.|. | +.|.+..+|++|||-.+..|.|+
T Consensus 1 iqVtV~q~g~~dl~l~vnPy~pI~k~K~kI~~~~~~~g-~qrLsfQepgg~rqlL~s~~sLA~yGiFs~~~i~ll 74 (80)
T cd01811 1 IQVTVEQTGYSDWILRVNPYSPIRKIKEKIRRSRNCSG-LQRLSFQEPGGERQLLSSRKSLADYGIFSKTNICLL 74 (80)
T ss_pred CEEEeeecCCCceEEEeCCcchHHHHHHHHHHhhCccc-ceEEEeecCCcccccccccccHhhhcceeccEEEEE
Confidence 47899998888899999999999999999999999998 9999983 3 33689999999999888888887
No 89
>PF13019 Telomere_Sde2: Telomere stability and silencing
Probab=96.90 E-value=0.0034 Score=61.65 Aligned_cols=78 Identities=13% Similarity=0.177 Sum_probs=61.7
Q ss_pred eEEEEEecCC----ceEEEEcCCCCcHHHHHHHHhhhhCCCCCCe-EEEE-CCeec--CCCccccccCCCCC----CEEE
Q psy15035 605 LMINIKSNTG----NTVCVNLDPASDIRNVKEMIAPKLGLKYEEV-KIIF-AGKEL--EDTTIISECDLGQQ----SILH 672 (816)
Q Consensus 605 M~V~Vk~~~g----~t~~v~V~~~~TV~~LK~~I~~~~Gip~~~q-rLif-~Gk~L--~d~~tL~~~~I~~~----stl~ 672 (816)
|+|+|++..| .++.+.++++.||.+|+..|....++|...+ .|.+ .|+.| .++..++++.-.++ .+++
T Consensus 1 i~Vlvss~~g~~lp~tl~~~lp~~ttv~dL~~~l~~~~~~~~~~~~~L~~~~n~~l~~~~~~~~s~l~~~~~~~~~~~l~ 80 (162)
T PF13019_consen 1 INVLVSSFDGLTLPPTLSLSLPSTTTVSDLKDRLSERLPIPSSSQLYLTTNSNGQLSPSSDIPLSSLLSSSQDSDFITLR 80 (162)
T ss_pred CeEEEecCCCCCCCCeEEeeCCCCCcHHHHHHHHHhhcCCCccceeEEEEeCCCeeCCCccccHHhhccCcCCCCceEEE
Confidence 6899999999 5899999999999999999999999999884 4444 45566 45666666654333 4688
Q ss_pred Ee-eCCCCCCc
Q psy15035 673 AV-KSSPENNK 682 (816)
Q Consensus 673 lv-r~~gg~~~ 682 (816)
+. |+.||+..
T Consensus 81 l~~rl~GGKGG 91 (162)
T PF13019_consen 81 LSLRLRGGKGG 91 (162)
T ss_pred EEEeccCCCcc
Confidence 88 99999776
No 90
>KOG4495|consensus
Probab=96.73 E-value=0.0018 Score=57.13 Aligned_cols=60 Identities=13% Similarity=0.279 Sum_probs=49.5
Q ss_pred EEEEecCCceEEEEcCCCCcHHHHHHHHhhhhCCCCCCeEEEE-CC-eecCCCccccccCCCC
Q psy15035 607 INIKSNTGNTVCVNLDPASDIRNVKEMIAPKLGLKYEEVKIIF-AG-KELEDTTIISECDLGQ 667 (816)
Q Consensus 607 V~Vk~~~g~t~~v~V~~~~TV~~LK~~I~~~~Gip~~~qrLif-~G-k~L~d~~tL~~~~I~~ 667 (816)
+.||- ...++.++.+++.||-+||.+++....-|++.|||+. .. +.|+|+.||+++|...
T Consensus 5 ~~VrR-~kttif~da~es~tV~elK~~l~gi~~~Pvn~qrL~kmd~eqlL~D~ktL~d~gfts 66 (110)
T KOG4495|consen 5 LRVRR-HKTTIFTDAKESSTVFELKRKLEGILKRPVNEQRLYKMDTEQLLDDGKTLGDCGFTS 66 (110)
T ss_pred eeeee-cceeEEeecCccccHHHHHHHHHHHHhCCCcchheeecCHHHHhhccchhhhccccc
Confidence 34444 2346789999999999999999999999999999986 33 5679999999998753
No 91
>KOG1769|consensus
Probab=96.67 E-value=0.012 Score=52.92 Aligned_cols=75 Identities=12% Similarity=0.380 Sum_probs=66.3
Q ss_pred eEEEEEecCCceEEEEcCCCCcHHHHHHHHhhhhCCCCCCeEEEECCeecCCCccccccCCCCCCEEEEe-eCCCC
Q psy15035 605 LMINIKSNTGNTVCVNLDPASDIRNVKEMIAPKLGLKYEEVKIIFAGKELEDTTIISECDLGQQSILHAV-KSSPE 679 (816)
Q Consensus 605 M~V~Vk~~~g~t~~v~V~~~~TV~~LK~~I~~~~Gip~~~qrLif~Gk~L~d~~tL~~~~I~~~stl~lv-r~~gg 679 (816)
+.+.|+.-+|.+..+.|..+++...|+..-+++.|++..++|++|+|+.+....|-.++++++++.|-++ ...||
T Consensus 21 i~LKV~gqd~~~~~Fkikr~t~LkKLM~aYc~r~Gl~~~s~RFlFdG~rI~~~~TP~~L~mEd~D~Iev~~~q~gG 96 (99)
T KOG1769|consen 21 INLKVKGQDGSVVVFKIKRHTPLKKLMKAYCERQGLSMNSLRFLFDGQRIRETHTPADLEMEDGDEIEVVQEQTGG 96 (99)
T ss_pred EEEEEecCCCCEEEEEeecCChHHHHHHHHHHHcCCccceEEEEECCcCcCCCCChhhhCCcCCcEEEEEeecccC
Confidence 4455555456677889999999999999999999999999999999999999999999999999999999 55555
No 92
>KOG0416|consensus
Probab=96.32 E-value=0.0019 Score=62.83 Aligned_cols=43 Identities=7% Similarity=0.030 Sum_probs=38.4
Q ss_pred cccceEEEEeCCCCCCCCCcchhhhhchhhhhhhhhhhheeccC
Q psy15035 556 TLTHWTGMIIGPPRTSTTGHIMDTIIGYIMSVLNEILHLFWISR 599 (816)
Q Consensus 556 ~l~~w~~~i~GP~~t~~e~~~~~l~i~f~~~yp~~~p~~~~~~~ 599 (816)
.|++....+.||-+||||||++.+.+++|++||.+-|++ .|..
T Consensus 28 ~m~ef~V~f~GP~ds~YegGvWkv~V~lPd~YP~KSPSI-GFvn 70 (189)
T KOG0416|consen 28 GMQEFYVKFHGPKDSPYEGGVWKVRVELPDNYPFKSPSI-GFVN 70 (189)
T ss_pred cccEEEEEeeCCCCCcccCceEEEEEECCCCCCCCCCcc-ccee
Confidence 456899999999999999999999999999999999988 3544
No 93
>PF00789 UBX: UBX domain; InterPro: IPR001012 The UBX domain is found in ubiquitin-regulatory proteins, which are members of the ubiquitination pathway, as well as a number of other proteins including FAF-1 (FAS-associated factor 1), the human Rep-8 reproduction protein and several hypothetical proteins from yeast. The function of the UBX domain is not known although the fragment of avian FAF-1 containing the UBX domain causes apoptosis of transfected cells.; GO: 0005515 protein binding; PDB: 3QX1_A 1H8C_A 3QCA_B 3QQ8_B 3QC8_B 3R3M_A 3QWZ_B 1S3S_H 1JRU_A 1I42_A ....
Probab=96.09 E-value=0.031 Score=48.89 Aligned_cols=72 Identities=17% Similarity=0.306 Sum_probs=62.5
Q ss_pred CceEEEEEecCCceEEEEcCCCCcHHHHHHHHhhhhCCCCCC-eEEE--ECCeecCCC--ccccccCCCCCCEEEEe
Q psy15035 603 NTLMINIKSNTGNTVCVNLDPASDIRNVKEMIAPKLGLKYEE-VKII--FAGKELEDT--TIISECDLGQQSILHAV 674 (816)
Q Consensus 603 ~~M~V~Vk~~~g~t~~v~V~~~~TV~~LK~~I~~~~Gip~~~-qrLi--f~Gk~L~d~--~tL~~~~I~~~stl~lv 674 (816)
....|.||.++|+.+.-...+++||.+|..-|......+... ..|+ |-.+.+.+. .||++.|+.++++|+|-
T Consensus 5 ~~~~I~vRlpdG~~l~~~F~~~~tl~~l~~~v~~~~~~~~~~~f~L~~~~Pr~~l~~~~~~tl~e~~l~p~~~l~v~ 81 (82)
T PF00789_consen 5 DVVRIQVRLPDGSRLQRRFPKSDTLQDLYDFVESQLFSPEESDFELITAFPRRELTDEDSKTLEEAGLLPSATLIVE 81 (82)
T ss_dssp SEEEEEEEETTSTEEEEEEETTSBHHHHHHHHHHHHHCTTTSSEEEEESSSTEECCSTTTSBTCCCTTSSCEEEEEE
T ss_pred CEEEEEEECCCCCEEEEEECCcchHHHHHHHHHHhcCCCCCccEEEEeCCCCcCCCccccccHHHhcCCCCeEEEEE
Confidence 457899999999999999999999999999999998887765 7786 677888644 69999999999999874
No 94
>PF08817 YukD: WXG100 protein secretion system (Wss), protein YukD; InterPro: IPR014921 YukD is a bacterial protein that adopts a ubiquitin-like fold []. Ubiquitin covalently binds to protein and flags them for protein degradation, however conjugation assays have indicated that YukD lacks the capacity for covalent bond formation with other proteins []. ; PDB: 2BPS_B.
Probab=95.91 E-value=0.013 Score=51.06 Aligned_cols=70 Identities=13% Similarity=0.254 Sum_probs=50.3
Q ss_pred eEEEEEecCCceEEEEcCCCCcHHHHHHHHhhhhCCCCCC------eEEE-ECCeecCCCccccccCCCCCCEEEEe
Q psy15035 605 LMINIKSNTGNTVCVNLDPASDIRNVKEMIAPKLGLKYEE------VKII-FAGKELEDTTIISECDLGQQSILHAV 674 (816)
Q Consensus 605 M~V~Vk~~~g~t~~v~V~~~~TV~~LK~~I~~~~Gip~~~------qrLi-f~Gk~L~d~~tL~~~~I~~~stl~lv 674 (816)
..|+|....|+.+.+.++.+.+|++|...+.+..+.+... .+|. -+|..|+++.||+++||.+|+++++.
T Consensus 3 ~rVtv~~~~~~~~Dl~lP~~vpv~~li~~l~~~~~~~~~~~~~~~~~~L~~~~g~~L~~~~tL~~~gV~dGd~L~L~ 79 (79)
T PF08817_consen 3 CRVTVDAGNGRQVDLALPADVPVAELIPELVELLGLPGDDPPGHGQWVLARAGGRPLDPDQTLADAGVRDGDVLVLR 79 (79)
T ss_dssp EEEEEE-TT--EEEEEEETTSBTTHHHHHHHHHS---S---TT-E-EEEG-GGTEEEETTSBCGGGT--TT-EEEE-
T ss_pred EEEEEEcCCCcEEEEEcCCCCcHHHHHHHHHHHhCCccCCCCCcceEEEEecCCcccCCcCcHhHcCCCCCCEEEeC
Confidence 4678877667899999999999999999999988764332 3454 57999999999999999999999873
No 95
>PF11470 TUG-UBL1: GLUT4 regulating protein TUG; InterPro: IPR021569 TUG is a GLUT4 regulating protein and functions to retain membrane vesicles containing GLUT4 intracellularly. TUG releases the GLUT4 containing vesicles to the cellular exocytic machinery in response to insulin stimulation which allows translocation to the plasma membrane []. TUG has an N-terminal ubiquitin-like domain (UBL1) which in similar proteins appears to participate in protein-protein interactions []. The region does have a area of negative electrostatic potential and increased backbone motility which leads to suggestions of a potential protein-protein interaction site []. ; PDB: 2AL3_A.
Probab=95.85 E-value=0.023 Score=47.73 Aligned_cols=62 Identities=18% Similarity=0.190 Sum_probs=47.0
Q ss_pred cCCceEEEEcCCCCcHHHHHHHHhhhhCCCCCCeEEEECCeecCCCccccccCCCCCCEEEE
Q psy15035 612 NTGNTVCVNLDPASDIRNVKEMIAPKLGLKYEEVKIIFAGKELEDTTIISECDLGQQSILHA 673 (816)
Q Consensus 612 ~~g~t~~v~V~~~~TV~~LK~~I~~~~Gip~~~qrLif~Gk~L~d~~tL~~~~I~~~stl~l 673 (816)
.+++.+.|.|.|++++.++-+....++|+++++-.|.|+++.|+-+.++.-.|+.+|+.+.|
T Consensus 4 ~~~rr~~vkvtp~~~l~~VL~eac~k~~l~~~~~~L~h~~k~ldlslp~R~snL~n~akLeL 65 (65)
T PF11470_consen 4 YNFRRFKVKVTPNTTLNQVLEEACKKFGLDPSSYDLKHNNKPLDLSLPFRLSNLPNNAKLEL 65 (65)
T ss_dssp TTS-EEEE---TTSBHHHHHHHHHHHTT--GGG-EEEETTEEESSS-BHHHH---SS-EEEE
T ss_pred cCCcEEEEEECCCCCHHHHHHHHHHHcCCCccceEEEECCEEeccccceeecCCCCCCEEeC
Confidence 46889999999999999999999999999999999999999999999999999999998865
No 96
>PF10302 DUF2407: DUF2407 ubiquitin-like domain; InterPro: IPR019413 This entry represents a family of proteins of unknown function found in fungi. They contain a characteristic GFDRL sequence motif.
Probab=95.47 E-value=0.03 Score=50.89 Aligned_cols=59 Identities=19% Similarity=0.319 Sum_probs=45.5
Q ss_pred EEEEecCC-ceEEEEcC--CCCcHHHHHHHHhhhhC--CCCCCeEEEECCeecCCCccccccCC
Q psy15035 607 INIKSNTG-NTVCVNLD--PASDIRNVKEMIAPKLG--LKYEEVKIIFAGKELEDTTIISECDL 665 (816)
Q Consensus 607 V~Vk~~~g-~t~~v~V~--~~~TV~~LK~~I~~~~G--ip~~~qrLif~Gk~L~d~~tL~~~~I 665 (816)
|.||+.++ .-++++|+ .+.||.+||+.|....+ ..-..+||||+|+.|.|+..|+..-.
T Consensus 3 l~IRFs~sipDl~L~I~~~~~~Tv~~LK~lIR~~~p~~~s~~rLRlI~~Gr~L~d~t~l~~~l~ 66 (97)
T PF10302_consen 3 LTIRFSDSIPDLPLDIPSPNTTTVAWLKQLIRERLPPEPSRRRLRLIYAGRLLNDHTDLSSELK 66 (97)
T ss_pred EEEEECCCCCCceeecCCCCcccHHHHHHHHHhhcCCCCccccEEeeecCcccCccchhhhhhc
Confidence 45666542 34677777 88999999999999984 45556789999999999888876543
No 97
>smart00166 UBX Domain present in ubiquitin-regulatory proteins. Present in FAF1 and Shp1p.
Probab=95.45 E-value=0.074 Score=46.43 Aligned_cols=71 Identities=15% Similarity=0.222 Sum_probs=59.8
Q ss_pred ceEEEEEecCCceEEEEcCCCCcHHHHHHHHhhhhCCCCCCeEEE--ECCeecCC---CccccccCCCCCCEEEEe
Q psy15035 604 TLMINIKSNTGNTVCVNLDPASDIRNVKEMIAPKLGLKYEEVKII--FAGKELED---TTIISECDLGQQSILHAV 674 (816)
Q Consensus 604 ~M~V~Vk~~~g~t~~v~V~~~~TV~~LK~~I~~~~Gip~~~qrLi--f~Gk~L~d---~~tL~~~~I~~~stl~lv 674 (816)
.-.|.||..+|..+.-...+++||++|.+-|....+.+.....|+ |-.+.+.+ +.||.+.|+.++.+|.|-
T Consensus 4 ~~~I~iRlPdG~ri~~~F~~~~tl~~v~~~v~~~~~~~~~~f~L~t~~Prk~l~~~d~~~tL~e~gL~p~~~l~v~ 79 (80)
T smart00166 4 QCRLQIRLPDGSRLVRRFPSSDTLRTVYEFVSAALTDGNDPFTLNSPFPRRTFTKDDYSKTLLELALLPSSTLVLE 79 (80)
T ss_pred eEEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHcccCCCCCEEEEeCCCCcCCccccccCCHHHCCCCCceEEEEe
Confidence 457899999999999999999999999999977677777777886 77788853 479999999998888763
No 98
>KOG0895|consensus
Probab=95.04 E-value=0.03 Score=68.47 Aligned_cols=68 Identities=16% Similarity=0.210 Sum_probs=58.3
Q ss_pred hhHHHHHHHhhhcCCCCCcceeccccCCCCcccceEEEEeCCCCCCCCCcchhhhhchhhhhhhhhhhheec
Q psy15035 526 NFRLLEELEHGQRGVGDGTISWGLENDDDMTLTHWTGMIIGPPRTSTTGHIMDTIIGYIMSVLNEILHLFWI 597 (816)
Q Consensus 526 ~~~l~~el~~~~~~~~~~~~s~gl~~~~d~~l~~w~~~i~GP~~t~~e~~~~~l~i~f~~~yp~~~p~~~~~ 597 (816)
..+..+|+.-+.++.+.+++- .+++..|+.-.+.|+||.+|||++|+|.+.|.||..||-.||.+-+.
T Consensus 284 skrv~ke~~llskdlpEgifv----rp~e~RMd~I~alIig~~gtPy~~glf~Fdiq~P~~yPa~pp~v~~l 351 (1101)
T KOG0895|consen 284 SKKVAKELKLLSKDLPEGIFV----RPDEGRMDLIKALIIGPDGTPYADGLFLFDIQFPDTYPAVPPHVKYL 351 (1101)
T ss_pred HHHHHHHhhhhcccCCCCccc----cccccccceeeeEEecCCCCCCcCCceeeEeecCCCCCCCCceeEEe
Confidence 567899999999998888433 45566777899999999999999999999999999999999988543
No 99
>cd01772 SAKS1_UBX SAKS1-like UBX domain. SAKS1 (SAPK-substrate-1), also known as Y33K, is a widely expressed protein containing N-terminal UBA (ubiquitin-associated) and C-terminal UBX (ubiqiutin-like) domains that was identified as a substrate of stress-activated protein kinases (SAPKs). SAKS1 is related evolutionarily to two other UBA/UBX-containing proteins, p47 and Faf1. The UBA and UBX domains of SAKS1 bind ubiquitin tetramers and valosin-containing protein (VCP), respectively suggesting a role for SAKS1 as an adaptor that directs VCP to polyubiquitinated proteins facilitating its destruction by the proteasome. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=94.89 E-value=0.13 Score=44.88 Aligned_cols=69 Identities=16% Similarity=0.241 Sum_probs=57.8
Q ss_pred eEEEEEecCCceEEEEcCCCCcHHHHHHHHhhhhCCCCCCeEEE--ECCeecCC---CccccccCCCCCCEEEEe
Q psy15035 605 LMINIKSNTGNTVCVNLDPASDIRNVKEMIAPKLGLKYEEVKII--FAGKELED---TTIISECDLGQQSILHAV 674 (816)
Q Consensus 605 M~V~Vk~~~g~t~~v~V~~~~TV~~LK~~I~~~~Gip~~~qrLi--f~Gk~L~d---~~tL~~~~I~~~stl~lv 674 (816)
-.|.||..+|..+.-..+.++|+++|.+-|....+-+ ....|+ |-.|.+.+ +.||.+.|+.+..+|.|.
T Consensus 5 ~~i~iRlp~G~~~~~~F~~~~tl~~v~~fV~~~~~~~-~~f~L~t~fPrk~~~~~d~~~TL~elgL~Psa~L~v~ 78 (79)
T cd01772 5 TRIQIRLLDGTTLKQTFKAREQLAAVRLFVELNTGNG-GPFTLMTPFPRKVFTEDDMEKPLQELGLVPSAVLIVT 78 (79)
T ss_pred EEEEEECCCCCEEEEEeCCCChHHHHHHHHHHcCCCC-CCEEEEeCCCCeECCcccccCCHHHCCCCCceEEEEe
Confidence 5689999999999999999999999999998766543 456776 78888853 579999999999998874
No 100
>cd01767 UBX UBX (ubiquitin regulatory X) domain. The UBX (ubiquitin regulatory X) domain has a beta-grasp fold that is structurally quite similar to ubiquitin although UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins. Most UBX-containing proteins including p47, FAF1, and SAKS1 (Y33K) also contain a UBA (ubiquitin-associated) domain and are thought to serve as adaptor molecules that shuttle proteins to the proteasome for degradation.
Probab=94.49 E-value=0.21 Score=43.20 Aligned_cols=67 Identities=13% Similarity=0.266 Sum_probs=54.0
Q ss_pred eEEEEEecCCceEEEEcCCCCcHHHHHHHHhhhhCCCCCCeEEE--ECCeecC---CCccccccCCCCCCEEEE
Q psy15035 605 LMINIKSNTGNTVCVNLDPASDIRNVKEMIAPKLGLKYEEVKII--FAGKELE---DTTIISECDLGQQSILHA 673 (816)
Q Consensus 605 M~V~Vk~~~g~t~~v~V~~~~TV~~LK~~I~~~~Gip~~~qrLi--f~Gk~L~---d~~tL~~~~I~~~stl~l 673 (816)
-.|.||.++|..+.-....++||++|.+-|....+- .....|+ |-.+.+. .+.||.+.|+.+ +++.+
T Consensus 3 t~i~iRlpdG~~~~~~F~~~~tl~~l~~fv~~~~~~-~~~f~L~t~~Pr~~~~~~~~~~TL~e~gL~~-s~~~~ 74 (77)
T cd01767 3 TKIQIRLPDGKRLEQRFNSTHKLSDVRDFVESNGPP-AEPFTLMTSFPRRVLTDLDYELTLQEAGLVN-EVVFQ 74 (77)
T ss_pred EEEEEEcCCCCEEEEEeCCCCCHHHHHHHHHHcCCC-CCCEEEEeCCCCccCCCCCccCcHHHcCCcc-ceEEE
Confidence 468999999999999999999999999999876543 4566776 6678785 488999999995 44444
No 101
>cd01770 p47_UBX p47-like ubiquitin domain. p47_UBX p47 is an adaptor molecule of the cytosolic AAA ATPase p97. The principal role of the p97-p47 complex is to regulate membrane fusion events. Mono-ubiquitin recognition by p47 is crucial for p97-p47-mediated Golgi membrane fusion events. p47 has carboxy-terminal SEP and UBX domains. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=94.47 E-value=0.16 Score=44.35 Aligned_cols=69 Identities=19% Similarity=0.337 Sum_probs=55.7
Q ss_pred ceEEEEEecCCceEEEEcCCCCcHHHHHHHHhhhhCC-CCCCeEEE--ECCeecC-CCccccccCCCCCCEEE
Q psy15035 604 TLMINIKSNTGNTVCVNLDPASDIRNVKEMIAPKLGL-KYEEVKII--FAGKELE-DTTIISECDLGQQSILH 672 (816)
Q Consensus 604 ~M~V~Vk~~~g~t~~v~V~~~~TV~~LK~~I~~~~Gi-p~~~qrLi--f~Gk~L~-d~~tL~~~~I~~~stl~ 672 (816)
.-.|.||..+|+.+....+.++||++|.+-|....+- ......|+ |-.+.|. ++.||.+.|+.+.+.++
T Consensus 4 ~t~iqiRlpdG~r~~~rF~~~~tv~~l~~~v~~~~~~~~~~~f~L~t~fP~k~l~~~~~Tl~eagL~~s~v~q 76 (79)
T cd01770 4 TTSIQIRLADGKRLVQKFNSSHRVSDVRDFIVNARPEFAARPFTLMTAFPVKELSDESLTLKEANLLNAVIVQ 76 (79)
T ss_pred eeEEEEECCCCCEEEEEeCCCCcHHHHHHHHHHhCCCCCCCCEEEecCCCCcccCCCCCcHHHCCCcCcEEEE
Confidence 4578999999999999999999999999999987643 23456675 7788885 58899999998755443
No 102
>cd01773 Faf1_like1_UBX Faf1 ike-1 UBX domain. Faf1_like1 is a protein of unknown function with a domain architecture that includes the UAS (ubiquitin-associated) and UBX (ubiquitin-like) domains. This protein is related to other UBA/UBX-containing proteins like Faf1, p47, and SAKS1 and may serve as an adaptor molecule that shuttles proteins to the proteasome for degradation. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=94.35 E-value=0.24 Score=43.55 Aligned_cols=70 Identities=13% Similarity=0.233 Sum_probs=61.1
Q ss_pred ceEEEEEecCCceEEEEcCCCCcHHHHHHHHhhhhCCCCCCeEEE--ECCeecC---CCccccccCCCCCCEEEEe
Q psy15035 604 TLMINIKSNTGNTVCVNLDPASDIRNVKEMIAPKLGLKYEEVKII--FAGKELE---DTTIISECDLGQQSILHAV 674 (816)
Q Consensus 604 ~M~V~Vk~~~g~t~~v~V~~~~TV~~LK~~I~~~~Gip~~~qrLi--f~Gk~L~---d~~tL~~~~I~~~stl~lv 674 (816)
.-+|.||.++|....-....++++++|-.-|.. .|.+++...|+ |--|.+. .+.||.+.|+.+..+|.|-
T Consensus 5 ~t~i~vRlP~G~r~~rrF~~~~~L~~v~~fv~~-~g~~~~~f~L~t~FPRr~~~~~d~~~TL~e~GL~P~~~LfVq 79 (82)
T cd01773 5 KARLMLRYPDGKREQIALPEQAKLLALVRHVQS-KGYPNERFELLTNFPRRKLSHLDYDITLQEAGLCPQETVFVQ 79 (82)
T ss_pred eeEEEEECCCCCEEEEEeCCCCcHHHHHHHHHh-cCCCCCCEEEecCCCCcccCCcccCCCHHHcCCCCCcEEEEe
Confidence 347899999999999999999999999999998 68899999998 6667773 3579999999999999886
No 103
>KOG0420|consensus
Probab=93.95 E-value=0.054 Score=53.14 Aligned_cols=71 Identities=14% Similarity=0.028 Sum_probs=49.4
Q ss_pred hhhhHHHHHHHhhhcCCCCCcceecccc-CCCCcccceEEEEeCCCCCCCCCcchhhhhchhhhhhhhhhhheeccC
Q psy15035 524 PRNFRLLEELEHGQRGVGDGTISWGLEN-DDDMTLTHWTGMIIGPPRTSTTGHIMDTIIGYIMSVLNEILHLFWISR 599 (816)
Q Consensus 524 p~~~~l~~el~~~~~~~~~~~~s~gl~~-~~d~~l~~w~~~i~GP~~t~~e~~~~~l~i~f~~~yp~~~p~~~~~~~ 599 (816)
..-+||.++.-+++ -..+.+.+..+ ++|.+-....-+| -|+.-.|.||.|.+.+.+|+.||..||++- |..
T Consensus 28 ~a~lrl~~di~eln---Lp~t~~~s~~~~~~d~~~~~~elti-~PdEGyY~gGkf~F~~~v~~~Yp~~PPKVk-Clt 99 (184)
T KOG0420|consen 28 AALLRLKKDILELN---LPPTCSLSFPDSPDDLNNLEFELTI-TPDEGYYQGGKFRFKFKVPNAYPHEPPKVK-CLT 99 (184)
T ss_pred HHHHHHHhhhhhcc---CCCccccccccCCcccccceEEEEE-ccCcceecCceEEEEEECCCCCCCCCCeee-eee
Confidence 44567777777776 33335544434 3443322455555 499999999999999999999999999884 544
No 104
>KOG0895|consensus
Probab=93.89 E-value=0.014 Score=71.26 Aligned_cols=40 Identities=8% Similarity=0.031 Sum_probs=36.4
Q ss_pred cccceEEEEeCCCCCCCCCcchhhhhchhhhhhhhhhhhe
Q psy15035 556 TLTHWTGMIIGPPRTSTTGHIMDTIIGYIMSVLNEILHLF 595 (816)
Q Consensus 556 ~l~~w~~~i~GP~~t~~e~~~~~l~i~f~~~yp~~~p~~~ 595 (816)
.|--..++|+||.+|||.+|.|++.+.||.+||-.||-+.
T Consensus 879 r~d~~~~~~~g~~~tpy~~~~f~fd~~~~~~yp~~pp~~~ 918 (1101)
T KOG0895|consen 879 RMDLLRAVIVGAAGTPYQDGLFFFDFQFPQDYPSSPPLVH 918 (1101)
T ss_pred HHHHHHHHhhCCCCCccccceEEEEeecCCCCCCCCCceE
Confidence 4445789999999999999999999999999999999886
No 105
>KOG0013|consensus
Probab=93.87 E-value=0.11 Score=52.76 Aligned_cols=62 Identities=18% Similarity=0.261 Sum_probs=57.0
Q ss_pred CCceEEEEcCCCCcHHHHHHHHhhhhCCCCCCeEEEECCeecCCCccccccCCCCCCEEEEe
Q psy15035 613 TGNTVCVNLDPASDIRNVKEMIAPKLGLKYEEVKIIFAGKELEDTTIISECDLGQQSILHAV 674 (816)
Q Consensus 613 ~g~t~~v~V~~~~TV~~LK~~I~~~~Gip~~~qrLif~Gk~L~d~~tL~~~~I~~~stl~lv 674 (816)
++..+.+.+...+|+.++|..+..+.|+.+-.|+++|.|+.|-+...|..|+|+.|....+-
T Consensus 155 T~~d~~lta~~~Dtv~eik~~L~Aaeg~D~~sQrif~Sg~~l~dkt~LeEc~iekg~rYvlq 216 (231)
T KOG0013|consen 155 TREDFWLTAPHYDTVGEIKRALRAAEGVDPLSQRIFFSGGVLVDKTDLEECKIEKGQRYVLQ 216 (231)
T ss_pred hhhheeecccCcCcHHHHHHHHHHhhccchhhheeeccCCceeccccceeeeecCCCEEEEE
Confidence 57788999999999999999999999999999999999999999999999999999665444
No 106
>cd01774 Faf1_like2_UBX Faf1 ike-2 UBX domain. Faf1_like2 is a protein of unknown function with a domain architecture that includes the UAS (ubiquitin-associated) and UBX (ubiquitin-like) domains. This protein is related to other UBA/UBX-containing proteins like Faf1, p47, and SAKS1 and may serve as an adaptor molecule that shuttles proteins to the proteasome for degradation. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=93.86 E-value=0.36 Score=42.84 Aligned_cols=71 Identities=18% Similarity=0.218 Sum_probs=58.7
Q ss_pred CceEEEEEecCCceEEEEcCCCCcHHHHHHHHhhhhCCCCCCeEEEECC--eecC--------CCccccccCCCCCCEEE
Q psy15035 603 NTLMINIKSNTGNTVCVNLDPASDIRNVKEMIAPKLGLKYEEVKIIFAG--KELE--------DTTIISECDLGQQSILH 672 (816)
Q Consensus 603 ~~M~V~Vk~~~g~t~~v~V~~~~TV~~LK~~I~~~~Gip~~~qrLif~G--k~L~--------d~~tL~~~~I~~~stl~ 672 (816)
...+|.||.++|..+.-....++||++|..-|.. .+-.++...|+++= +.+. .+.||.+.||.+..+|.
T Consensus 3 ~~~~I~iRlp~G~Rl~rrF~~~~tl~~l~~fv~~-~~~~~~~f~L~t~FPrr~~~~~~~~~~~~~~TL~eaGL~~s~~L~ 81 (85)
T cd01774 3 DTVKIVFKLPNGTRVERRFLFTQSLRVIHDFLFS-LKETPEKFQIVTNFPRRVLPCLPSEGDPPPPTLLEAGLSNSEVLF 81 (85)
T ss_pred ceEEEEEECCCCCEEEEEeCCCCcHHHHHHHHHh-CCCCCCcEEEecCCCCccccccccccCcCCCCHHHcCCCCccEEE
Confidence 3568999999999998899999999999999965 45566888998544 7775 36799999999888876
Q ss_pred Ee
Q psy15035 673 AV 674 (816)
Q Consensus 673 lv 674 (816)
|-
T Consensus 82 V~ 83 (85)
T cd01774 82 VQ 83 (85)
T ss_pred Ee
Confidence 63
No 107
>COG5417 Uncharacterized small protein [Function unknown]
Probab=93.53 E-value=0.4 Score=40.81 Aligned_cols=70 Identities=13% Similarity=0.259 Sum_probs=58.5
Q ss_pred ceEEEE--EecCCceEEEEcCCCCcHHHHHHHHhhhhCC-----CCCCeEEEECCeecCCCccccccCCCCCCEEEE
Q psy15035 604 TLMINI--KSNTGNTVCVNLDPASDIRNVKEMIAPKLGL-----KYEEVKIIFAGKELEDTTIISECDLGQQSILHA 673 (816)
Q Consensus 604 ~M~V~V--k~~~g~t~~v~V~~~~TV~~LK~~I~~~~Gi-----p~~~qrLif~Gk~L~d~~tL~~~~I~~~stl~l 673 (816)
-|+|+| +.-+|.++.+.++...+|..|-..+.+...+ .-.++|+.-.++.|.++..|.+|+|.+|+.+.+
T Consensus 4 ~ikVTvD~t~y~g~~yDLrl~d~~pikklIdivwe~~kis~~~reg~~Ikv~nKa~llsgd~kL~d~~IadGD~Lei 80 (81)
T COG5417 4 HIKVTVDFTNYNGGTYDLRLPDYLPIKKLIDIVWESLKISIFDREGTQIKVMNKAQLLSGDDKLIDYQIADGDILEI 80 (81)
T ss_pred eEEEEEEeEecCCceEEEeccccchHHHHHHHHHHHhhccccccCCCEEEEeccceEecCCceEEeccccCCCEEEe
Confidence 366666 3346899999999999999999988887653 235678999999999999999999999998865
No 108
>cd01771 Faf1_UBX Faf1 UBX domain. Faf1 (fas-associated factor1) is a nucleolar protein that was first identified as an interaction partner of the death receptor Fas. Faf1 contains N-terminal UAS (ubiquitin-associated) and C-terminal UBX (ubiquitin-like) domains and is closely related to other UBA/UBX-containing proteins like p47, Rep8 and SAKS1. Faf1 is thought to be involved in 18S rRNA synthesis and/or 40S ribosomal subunit assembly. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=93.22 E-value=0.58 Score=41.00 Aligned_cols=71 Identities=15% Similarity=0.249 Sum_probs=60.9
Q ss_pred CceEEEEEecCCceEEEEcCCCCcHHHHHHHHhhhhCCCCCCeEEE--ECCeecC---CCccccccCCCCCCEEEEe
Q psy15035 603 NTLMINIKSNTGNTVCVNLDPASDIRNVKEMIAPKLGLKYEEVKII--FAGKELE---DTTIISECDLGQQSILHAV 674 (816)
Q Consensus 603 ~~M~V~Vk~~~g~t~~v~V~~~~TV~~LK~~I~~~~Gip~~~qrLi--f~Gk~L~---d~~tL~~~~I~~~stl~lv 674 (816)
...+|.||.++|..+.-....++++++|-.-|... |.++...+|+ |=-+.+. .+.||.+.|+.++.+|.|-
T Consensus 3 ~~~~i~iRlP~G~r~~rrF~~t~~L~~l~~fv~~~-~~~~~~f~L~t~fPRk~~~~~d~~~TL~e~gL~p~~~L~Ve 78 (80)
T cd01771 3 PISKLRVRTPSGDFLERRFLGDTPLQVLLNFVASK-GYPIDEYKLLSSWPRRDLTQLDPNFTLLELKLYPQETLILE 78 (80)
T ss_pred CeEEEEEECCCCCEEEEEeCCCCcHHHHHHHHHhc-CCCCCCEEEecCCCCCCCcCCCCCCcHHHcCCCCCcEEEEE
Confidence 34678999999999988999999999999999875 8888889997 7778774 3579999999999988875
No 109
>KOG3206|consensus
Probab=92.33 E-value=0.36 Score=49.03 Aligned_cols=71 Identities=13% Similarity=0.246 Sum_probs=56.0
Q ss_pred eEEEEEecCCc-eEEEEcCCCCcHHHHHHHHhhhhCCCCCCeEE-EECC-----eecC-CCccccccCCCCCCEEEEee
Q psy15035 605 LMINIKSNTGN-TVCVNLDPASDIRNVKEMIAPKLGLKYEEVKI-IFAG-----KELE-DTTIISECDLGQQSILHAVK 675 (816)
Q Consensus 605 M~V~Vk~~~g~-t~~v~V~~~~TV~~LK~~I~~~~Gip~~~qrL-if~G-----k~L~-d~~tL~~~~I~~~stl~lvr 675 (816)
+.|+|-+.... ......+++.||++||.+++-.+|.+++..+| +|.| ..|+ ++..|..|+..+|-.||++-
T Consensus 2 v~v~Iss~~~~~~~Ekr~~~~ltl~q~K~KLe~~~G~~~~~M~l~l~~~~d~~~~~lsn~d~~lg~~~~~Dg~rihviD 80 (234)
T KOG3206|consen 2 VRVVISSSLNDFRTEKRLSNSLTLAQFKDKLELLTGTEAESMELELYDGDDKKVSALSNEDADLGFYKVEDGLRIHVID 80 (234)
T ss_pred eEEEEecccccchhhhhcCCcCcHHHHHhhhhhhhCCCccceEEEEEcCCCceeeeccCCcccccccCCCCceEEEEEe
Confidence 34556443222 24456789999999999999999999999998 5776 3454 67899999999999999993
No 110
>COG5227 SMT3 Ubiquitin-like protein (sentrin) [Posttranslational modification, protein turnover, chaperones]
Probab=91.28 E-value=0.32 Score=42.85 Aligned_cols=70 Identities=11% Similarity=0.360 Sum_probs=62.4
Q ss_pred eEEEEEecCCceEEEEcCCCCcHHHHHHHHhhhhCCCCCCeEEEECCeecCCCccccccCCCCCCEEEEe
Q psy15035 605 LMINIKSNTGNTVCVNLDPASDIRNVKEMIAPKLGLKYEEVKIIFAGKELEDTTIISECDLGQQSILHAV 674 (816)
Q Consensus 605 M~V~Vk~~~g~t~~v~V~~~~TV~~LK~~I~~~~Gip~~~qrLif~Gk~L~d~~tL~~~~I~~~stl~lv 674 (816)
+.+.|-.-+|.++.+.|..+++...|....+++.|-..+..|++|+|+.++.++|-.+++.+++..|.++
T Consensus 25 inLkvv~qd~telfFkiKktT~f~klm~af~~rqGK~m~slRfL~dG~rI~~dqTP~dldmEdnd~iEav 94 (103)
T COG5227 25 INLKVVDQDGTELFFKIKKTTTFKKLMDAFSRRQGKNMSSLRFLFDGKRIDLDQTPGDLDMEDNDEIEAV 94 (103)
T ss_pred cceEEecCCCCEEEEEEeccchHHHHHHHHHHHhCcCcceeEEEEcceecCCCCChhhcCCccchHHHHH
Confidence 3344444467788899999999999999999999999999999999999999999999999999988877
No 111
>TIGR00207 fliG flagellar motor switch protein FliG. The fliG protein along with fliM and fliN interact to form the switch complex of the bacterial flagellar motor located at the base of the basal body. This complex interacts with chemotaxis proteins (eg CHEY). In addition the complex interacts with other components of the motor that determine the direction of flagellar rotation. The model contains putative members of the fliG family at scores of less than 100 from Agrobacterium radiobacter and Sinorhizobium meliloti as well as fliG-like genes from treponema pallidum and Borrelia burgdorferi. That is why the suggested cutoff is set at 20 but was set at 100 to construct the family.
Probab=90.90 E-value=15 Score=41.04 Aligned_cols=168 Identities=15% Similarity=0.141 Sum_probs=99.3
Q ss_pred hcCCHHHHHHHHHHHhHHHHHHhhCc-CchHHHHHHHHhcCCHHHHHHHHHHHhcCc-----ceeeccCCcchhHHhhcC
Q psy15035 55 KSGDENTKNEIIKALQPHVVTLLSHT-TASPVLMYAHDQVASPAQKLAMRQELYGGL-----YESTGDKKINCLGDIFEQ 128 (816)
Q Consensus 55 ~~gs~eqr~~Ii~e~~g~v~~L~~h~-~G~~VVqk~~~~~at~eQr~~Li~e~yg~~-----~~l~kd~~~~~l~~ile~ 128 (816)
.+-++++...|+++|...+..-..-. -|-..++++++..-.+++-..|+.++++.. |.....-....|..+|.+
T Consensus 50 ~~v~~~~~~~vl~eF~~~~~~~~~~~~g~~~~~~~~L~~alg~~~a~~il~~i~~~~~~~~~~~~L~~~~~~~la~~l~~ 129 (338)
T TIGR00207 50 TQIDNQQKDDVLEEFEQIAEAQAYINIGGLDYAREVLEKALGEEKAASILNDLTSSLQTAPGFEFLRKAEPQQIADFIQQ 129 (338)
T ss_pred CCCCHHHHHHHHHHHHHHHHhcCCccCChHHHHHHHHHHhcCHHHHHHHHHHHhcccccCchhHHHHCCCHHHHHHHHHc
Confidence 35589999999999998876654333 335566777766667777888999998862 222233356777777777
Q ss_pred -ChhHHHHHHHHHHHHHHHhhhhhcccCCcchhhhHHHhh--hcCCChhhHHHHHHHhCCCCccccc---cCcChHHHHH
Q psy15035 129 -SPEMKTAILSVTKKTILKSLQKTQVTGSALLHAVLLDFI--SHSSDSPDLMEVLEMLAPLPLLPFV---HSKAGASVAM 202 (816)
Q Consensus 129 -~pekk~~Il~~l~~~l~~lv~K~~~~~~~ivh~vl~ey~--~~~~~~~~~~~iie~l~~~~l~~L~---~tk~Gs~Vv~ 202 (816)
+|.....|+.+|....-.-+=. .+- -.....++..-. ...++ +...++-+.|... +..+. ....|...+.
T Consensus 130 EhPQ~iAliLs~L~p~~AA~VL~-~Lp-~~~~~ei~~ria~l~~vs~-~~i~~ie~~L~~~-~~~~~~~~~~~gG~~~~a 205 (338)
T TIGR00207 130 EHPQTIALILSHLDPAQAADILS-LFP-EEVQAEVARRIATMGRTSP-EVVAEVERVLEGK-LDSLNSDYTKMGGVRAVA 205 (338)
T ss_pred cCHHHHHHHHHcCCHHHHHHHHH-hCC-HHHHHHHHHHHHhcCCCCH-HHHHHHHHHHHHH-HHhhccccccCChHHHHH
Confidence 6777777777665443222211 011 011111221111 11233 3333322222322 22221 2457889999
Q ss_pred HHHhhcCHHHHHHHHHHHHHHHHH
Q psy15035 203 HIIWNATNKLKKKIVKELKGHLRE 226 (816)
Q Consensus 203 ~cl~~~~~kdRk~Iik~lk~~v~~ 226 (816)
.+|.+.+...++.|+..|...=.+
T Consensus 206 ~ILN~~~~~~~~~il~~L~~~dp~ 229 (338)
T TIGR00207 206 EIINLMDRKTEKTIITSLEEFDPE 229 (338)
T ss_pred HHHHhCCchHHHHHHHHHHHhCHH
Confidence 999999999999999999854333
No 112
>PRK06437 hypothetical protein; Provisional
Probab=90.36 E-value=1.8 Score=36.61 Aligned_cols=62 Identities=15% Similarity=0.230 Sum_probs=48.5
Q ss_pred EEEecCCceEEEEcCCCCcHHHHHHHHhhhhCCCCCCeEEEECCeecCCCccccccCCCCCCEEEEeeCCC
Q psy15035 608 NIKSNTGNTVCVNLDPASDIRNVKEMIAPKLGLKYEEVKIIFAGKELEDTTIISECDLGQQSILHAVKSSP 678 (816)
Q Consensus 608 ~Vk~~~g~t~~v~V~~~~TV~~LK~~I~~~~Gip~~~qrLif~Gk~L~d~~tL~~~~I~~~stl~lvr~~g 678 (816)
+++-++++.-.++++...||.+|-+. .|++++..-+.-+|+.+. .++-|.+|+.|.+++.-|
T Consensus 4 ~~~v~g~~~~~~~i~~~~tv~dLL~~----Lgi~~~~vaV~vNg~iv~-----~~~~L~dgD~Veiv~~V~ 65 (67)
T PRK06437 4 MIRVKGHINKTIEIDHELTVNDIIKD----LGLDEEEYVVIVNGSPVL-----EDHNVKKEDDVLILEVFS 65 (67)
T ss_pred eEEecCCcceEEEcCCCCcHHHHHHH----cCCCCccEEEEECCEECC-----CceEcCCCCEEEEEeccc
Confidence 34444566678888989999998865 589999888899999997 566677899999994333
No 113
>PRK05686 fliG flagellar motor switch protein G; Validated
Probab=89.53 E-value=19 Score=40.22 Aligned_cols=163 Identities=12% Similarity=0.112 Sum_probs=92.6
Q ss_pred cCCHHHHHHHHHHHhHHHHHHhh-CcCchHHHHHHHHhcCCHHHHHHHHHHHhcCcc----eeeccCCcchhHHhhcC-C
Q psy15035 56 SGDENTKNEIIKALQPHVVTLLS-HTTASPVLMYAHDQVASPAQKLAMRQELYGGLY----ESTGDKKINCLGDIFEQ-S 129 (816)
Q Consensus 56 ~gs~eqr~~Ii~e~~g~v~~L~~-h~~G~~VVqk~~~~~at~eQr~~Li~e~yg~~~----~l~kd~~~~~l~~ile~-~ 129 (816)
.-+++....++++|...+..-.. ..-|-..+.++++..-.+++-..|+.++++..- .-...-....++.+|.+ +
T Consensus 54 ~vs~~~~~~vL~ef~~~~~~~~~~~~gg~~~~~~iL~~~l~~~~a~~il~~i~~~~~~~~fe~L~~ld~~~l~~lL~~Eh 133 (339)
T PRK05686 54 NVSPEQVEAVLEEFEDEFEAGAYILMGGIDYARSLLEKALGEEKADSILERILESLGTSGFDFLRKMDPQQLANFIRNEH 133 (339)
T ss_pred CCCHHHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHcCHHHHHHHHHHHhccccCchHHHHhcCCHHHHHHHHHhcC
Confidence 34788888888888887765432 345556678888655677778888888887422 22222255556666665 4
Q ss_pred hhHHHHHHHHHHHHHHHhhhhhcc---cCCcchhhhHHHhhhcCCChhhHHHHHHHhCCCCcccc----ccCcChHHHHH
Q psy15035 130 PEMKTAILSVTKKTILKSLQKTQV---TGSALLHAVLLDFISHSSDSPDLMEVLEMLAPLPLLPF----VHSKAGASVAM 202 (816)
Q Consensus 130 pekk~~Il~~l~~~l~~lv~K~~~---~~~~ivh~vl~ey~~~~~~~~~~~~iie~l~~~~l~~L----~~tk~Gs~Vv~ 202 (816)
|+.-..+++++......-+=. .+ ...-++.++. .+...++ +....+-+.|... +..+ .....|...+-
T Consensus 134 pqtiA~iLs~l~~~~aa~vL~-~l~~~~~~~v~~ria--~l~~v~~-~~~~~i~~~L~~~-l~~~~~~~~~~~~g~~~~a 208 (339)
T PRK05686 134 PQTIALILSYLKPDQAAEILS-LLPEELRADVMMRIA--TLEGVSP-EALKEVEEVLEKK-LSSMANADRTKMGGVKTVA 208 (339)
T ss_pred HHHHHHHHhCCCHHHHHHHHH-hCCHHHHHHHHHHHH--ccCCCCH-HHHHHHHHHHHHH-HhhcccccccccCcHHHHH
Confidence 455555554444332222111 00 0111222221 1122233 3333333443433 3221 24568999999
Q ss_pred HHHhhcCHHHHHHHHHHHHHH
Q psy15035 203 HIIWNATNKLKKKIVKELKGH 223 (816)
Q Consensus 203 ~cl~~~~~kdRk~Iik~lk~~ 223 (816)
.+|.+.+...++.|+..|...
T Consensus 209 ~Iln~~~~~~~~~il~~L~~~ 229 (339)
T PRK05686 209 EILNNLDRQTEKTILESLEEE 229 (339)
T ss_pred HHHhcCCchHHHHHHHHHHhh
Confidence 999999999999999999854
No 114
>KOG1639|consensus
Probab=88.27 E-value=0.73 Score=48.13 Aligned_cols=70 Identities=19% Similarity=0.239 Sum_probs=52.3
Q ss_pred eEEEEEecCCc-eEE-EEcCCCCcHHHHHHHHhhhh-CCCCCCe----EEEECCeecCCCccccccCCCCCCEEEEe
Q psy15035 605 LMINIKSNTGN-TVC-VNLDPASDIRNVKEMIAPKL-GLKYEEV----KIIFAGKELEDTTIISECDLGQQSILHAV 674 (816)
Q Consensus 605 M~V~Vk~~~g~-t~~-v~V~~~~TV~~LK~~I~~~~-Gip~~~q----rLif~Gk~L~d~~tL~~~~I~~~stl~lv 674 (816)
|.|++...++. .+. .+.+...||.|+++.+..+. .+-+..+ |+--+|+.|-|+++|++|+..+|.++.+-
T Consensus 1 m~It~~srs~~~~~~~~~~s~~~ti~d~~~~~~~~~~k~~~~~~r~tlr~e~kgkpl~~~s~l~e~~~~s~~~i~vK 77 (297)
T KOG1639|consen 1 MEITIASRSKGLRIKEKDLSGSETIDDLLKAISAKNLKITPYRIRLTLRVEPKGKPLIDNSKLQEYGDGSGATIYVK 77 (297)
T ss_pred CceeeeccCCCceeeeecCCCCCcHHHHHHHHHHhhhccCccchhheeeccCCCccccchhHHHHhccCCCCEEEEe
Confidence 67888776652 344 56778899999997776664 5555333 34468999999999999999999777665
No 115
>cd06406 PB1_P67 A PB1 domain is present in p67 proteins which forms a signaling complex with p40, a crucial step for activation of NADPH oxidase during phagocytosis. PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes . A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants. The p67 proteins contain
Probab=85.19 E-value=3.2 Score=36.32 Aligned_cols=38 Identities=18% Similarity=0.322 Sum_probs=35.4
Q ss_pred eEEEEcCCCCcHHHHHHHHhhhhCCCCCCeEEEECCee
Q psy15035 616 TVCVNLDPASDIRNVKEMIAPKLGLKYEEVKIIFAGKE 653 (816)
Q Consensus 616 t~~v~V~~~~TV~~LK~~I~~~~Gip~~~qrLif~Gk~ 653 (816)
++.+.|++..+..+|.++|.++.++|++...|.|.-..
T Consensus 12 tIaIrvp~~~~y~~L~~ki~~kLkl~~e~i~LsYkde~ 49 (80)
T cd06406 12 TVAIQVARGLSYATLLQKISSKLELPAEHITLSYKSEA 49 (80)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCCchhcEEEeccCC
Confidence 89999999999999999999999999999999987654
No 116
>PRK08364 sulfur carrier protein ThiS; Provisional
Probab=82.84 E-value=10 Score=32.12 Aligned_cols=65 Identities=9% Similarity=0.157 Sum_probs=47.0
Q ss_pred eEEEEEecCCceEEEEcCCCCcHHHHHHHHhhhhCCCCCCeEEEECCeecCCCccccccCCCCCCEEEEe-eCCCC
Q psy15035 605 LMINIKSNTGNTVCVNLDPASDIRNVKEMIAPKLGLKYEEVKIIFAGKELEDTTIISECDLGQQSILHAV-KSSPE 679 (816)
Q Consensus 605 M~V~Vk~~~g~t~~v~V~~~~TV~~LK~~I~~~~Gip~~~qrLif~Gk~L~d~~tL~~~~I~~~stl~lv-r~~gg 679 (816)
|+|++.. .+....+++++..||.+|-+.+ |+++....+..+|..... +.-+.+|+.|.++ ...||
T Consensus 5 m~v~vng-~~~~~~~~~~~~~tv~~ll~~l----~~~~~~v~v~vNg~iv~~-----~~~l~~gD~Veii~~V~GG 70 (70)
T PRK08364 5 IRVKVIG-RGIEKEIEWRKGMKVADILRAV----GFNTESAIAKVNGKVALE-----DDPVKDGDYVEVIPVVSGG 70 (70)
T ss_pred EEEEEec-cccceEEEcCCCCcHHHHHHHc----CCCCccEEEEECCEECCC-----CcCcCCCCEEEEEccccCC
Confidence 4555522 1235678888999999998764 788877778899998854 5567889999999 44443
No 117
>PF15044 CLU_N: Mitochondrial function, CLU-N-term
Probab=82.56 E-value=2 Score=37.32 Aligned_cols=54 Identities=19% Similarity=0.388 Sum_probs=46.6
Q ss_pred cCCCCcHHHHHHHHhhhhC-CCCCCeEEEECCeecCCCccccccC-CCCCCEEEEe
Q psy15035 621 LDPASDIRNVKEMIAPKLG-LKYEEVKIIFAGKELEDTTIISECD-LGQQSILHAV 674 (816)
Q Consensus 621 V~~~~TV~~LK~~I~~~~G-ip~~~qrLif~Gk~L~d~~tL~~~~-I~~~stl~lv 674 (816)
|+++++|.|+++.+..... -.-....|.++|+.|++...|++.. +++++++.|+
T Consensus 1 v~~~d~v~dvrq~L~~~~~t~~~Tn~~L~~~g~~L~~~~el~~i~~~~~~~~L~lv 56 (76)
T PF15044_consen 1 VSPTDTVQDVRQVLAESPETCYLTNFSLEHNGQRLDDFVELSEIEGIKDGCVLELV 56 (76)
T ss_pred CChhhHHHHHHHHHHhCccccceeEEEEEECCCccCCchhhhhhhCCCCCcEEEEE
Confidence 6789999999999988765 4556678899999999999998875 8889999998
No 118
>PF14836 Ubiquitin_3: Ubiquitin-like domain; PDB: 3JYU_A 4A3O_B 3PPA_A 3T9L_A 4A3P_A 3PV1_A.
Probab=81.33 E-value=8.1 Score=34.52 Aligned_cols=64 Identities=11% Similarity=0.170 Sum_probs=44.5
Q ss_pred ceEEEEcCCCCcHHHHHHHHhhhhCCCCCCeEEEE----CCee-cC-CCccccccCCCCCCEEEEe-eCCCC
Q psy15035 615 NTVCVNLDPASDIRNVKEMIAPKLGLKYEEVKIIF----AGKE-LE-DTTIISECDLGQQSILHAV-KSSPE 679 (816)
Q Consensus 615 ~t~~v~V~~~~TV~~LK~~I~~~~Gip~~~qrLif----~Gk~-L~-d~~tL~~~~I~~~stl~lv-r~~gg 679 (816)
..++...+..+||..+...+.+.+.| +.+-||.- ++.+ |. .+.|+.+.||.+|-+|.+- |...|
T Consensus 14 ~~~t~~FSk~DTI~~v~~~~rklf~i-~~E~RLW~~~~~~~~e~L~~~~~Tv~da~L~~gQ~vliE~rn~DG 84 (88)
T PF14836_consen 14 SVLTKQFSKTDTIGFVEKEMRKLFNI-QEETRLWNKYSENSYELLNNPEITVEDAGLYDGQVVLIEERNEDG 84 (88)
T ss_dssp EEEEEEE-TTSBHHHHHHHHHHHCT--TS-EEEEEECTTTCEEEE--TTSBTTTTT--TTEEEEEEE--TTS
T ss_pred cHhHhhccccChHHHHHHHHHHHhCC-CccceehhccCCcchhhhCCCCccHHHccCcCCCEEEEEeeccCC
Confidence 35677789999999999999999999 66789863 2333 54 5679999999999988887 76544
No 119
>cd00754 MoaD Ubiquitin domain of MoaD-like proteins. MoaD family. Members of this family are involved in biosynthesis of the molybdenum cofactor (Moco), an essential cofactor of a diverse group of redox enzymes. Moco biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea and eukaryotes. Moco contains a tricyclic pyranopterin, termed molybdopterin (MPT), that contains the cis-dithiolene group responsible for molybdenum ligation. This dithiolene group is generated by MPT synthase, the second major step in Moco biosynthesis. MPT synthase consists of a large (MoeE) and small (MoaD) subunit. The small subunit is inserted into the lare subunit to form the active site. The small subunit, which is structurally similar to ubiquitin, contains a C-terminal thiocarboxylated glycine residue that serves as a sulfur donor for the synthesis of the MPT dithiolene group.
Probab=80.44 E-value=7.5 Score=33.32 Aligned_cols=59 Identities=10% Similarity=0.131 Sum_probs=45.0
Q ss_pred eEEEEcCCCCcHHHHHHHHhhhhCC----CCCCeEEEECCeecCCCccccccCCCCCCEEEEe-eCCCC
Q psy15035 616 TVCVNLDPASDIRNVKEMIAPKLGL----KYEEVKIIFAGKELEDTTIISECDLGQQSILHAV-KSSPE 679 (816)
Q Consensus 616 t~~v~V~~~~TV~~LK~~I~~~~Gi----p~~~qrLif~Gk~L~d~~tL~~~~I~~~stl~lv-r~~gg 679 (816)
...++++...||.+|.+.+..+.+- ......+.-+|+... .+.-|.+|+.|.++ +..||
T Consensus 17 ~~~~~~~~~~tv~~ll~~l~~~~~~~~~~~~~~~~v~vNg~~v~-----~~~~l~~gD~v~i~ppv~GG 80 (80)
T cd00754 17 EEELELPEGATVGELLDALEARYPGLLEELLARVRIAVNGEYVR-----LDTPLKDGDEVAIIPPVSGG 80 (80)
T ss_pred eEEEECCCCCcHHHHHHHHHHHCchHHHhhhhcEEEEECCeEcC-----CCcccCCCCEEEEeCCCCCC
Confidence 4677888889999999999887542 334556777998887 35568889999999 66655
No 120
>PLN02799 Molybdopterin synthase sulfur carrier subunit
Probab=80.43 E-value=7.1 Score=33.98 Aligned_cols=70 Identities=14% Similarity=0.145 Sum_probs=47.1
Q ss_pred eEEEEEec------CC-ceEEEEcCCCCcHHHHHHHHhhhh-CCCC--CCeEEEECCeecCCCccccccCCCCCCEEEEe
Q psy15035 605 LMINIKSN------TG-NTVCVNLDPASDIRNVKEMIAPKL-GLKY--EEVKIIFAGKELEDTTIISECDLGQQSILHAV 674 (816)
Q Consensus 605 M~V~Vk~~------~g-~t~~v~V~~~~TV~~LK~~I~~~~-Gip~--~~qrLif~Gk~L~d~~tL~~~~I~~~stl~lv 674 (816)
|+|.|+.- .| ....++++...||++|.+.+..+. ++.. ....+..+|+...+ +.-|.+|++|.++
T Consensus 2 m~i~V~~fa~~re~~g~~~~~~~~~~~~tv~~L~~~l~~~~p~l~~~~~~~~vavN~~~v~~-----~~~l~dgDeVai~ 76 (82)
T PLN02799 2 VEIKVLFFARARELTGVSDMTLELPAGSTTADCLAELVAKFPSLEEVRSCCVLALNEEYTTE-----SAALKDGDELAII 76 (82)
T ss_pred eEEEEEehHHHHHHhCCCeEEEECCCCCcHHHHHHHHHHHChhHHHHhhCcEEEECCEEcCC-----CcCcCCCCEEEEe
Confidence 66777664 34 456788888999999999997664 1111 11235567776543 4557789999999
Q ss_pred -eCCCC
Q psy15035 675 -KSSPE 679 (816)
Q Consensus 675 -r~~gg 679 (816)
+..||
T Consensus 77 PpvsGG 82 (82)
T PLN02799 77 PPISGG 82 (82)
T ss_pred CCCCCC
Confidence 55554
No 121
>PRK06488 sulfur carrier protein ThiS; Validated
Probab=79.86 E-value=9.2 Score=31.78 Aligned_cols=64 Identities=8% Similarity=0.099 Sum_probs=44.2
Q ss_pred eEEEEEecCCceEEEEcCCCCcHHHHHHHHhhhhCCCCCCeEEEECCeecCCCccccccCCCCCCEEEEe-eCCCC
Q psy15035 605 LMINIKSNTGNTVCVNLDPASDIRNVKEMIAPKLGLKYEEVKIIFAGKELEDTTIISECDLGQQSILHAV-KSSPE 679 (816)
Q Consensus 605 M~V~Vk~~~g~t~~v~V~~~~TV~~LK~~I~~~~Gip~~~qrLif~Gk~L~d~~tL~~~~I~~~stl~lv-r~~gg 679 (816)
|+|+| +|+.+.+ + ..|+.+|...+ +++++...+-.+|..+. ...-.+.-|.+|+.|-++ ...||
T Consensus 1 m~i~~---Ng~~~~~--~-~~tl~~Ll~~l----~~~~~~vavavN~~iv~-~~~~~~~~L~dgD~Ieiv~~V~GG 65 (65)
T PRK06488 1 MKLFV---NGETLQT--E-ATTLALLLAEL----DYEGNWLATAVNGELVH-KEARAQFVLHEGDRIEILSPMQGG 65 (65)
T ss_pred CEEEE---CCeEEEc--C-cCcHHHHHHHc----CCCCCeEEEEECCEEcC-HHHcCccccCCCCEEEEEEeccCC
Confidence 44554 5676665 3 35899998764 67776666778998776 333445668889999999 55554
No 122
>cd06409 PB1_MUG70 The MUG70 protein is a product of the meiotically up-regulated gene 70 which has a role in meiosis and harbors a PB1 domain. The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domains depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic amino acid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is
Probab=79.71 E-value=4.4 Score=36.06 Aligned_cols=43 Identities=16% Similarity=0.335 Sum_probs=37.2
Q ss_pred EEEEecCCceEEEEcCCCCcHHHHHHHHhhhhCCCCC---CeEEEE
Q psy15035 607 INIKSNTGNTVCVNLDPASDIRNVKEMIAPKLGLKYE---EVKIIF 649 (816)
Q Consensus 607 V~Vk~~~g~t~~v~V~~~~TV~~LK~~I~~~~Gip~~---~qrLif 649 (816)
+.+|.+.|+++-+.+.|++++.+|++.|+++.|+... ...|.|
T Consensus 3 FK~~~~~GrvhRf~~~~s~~~~~L~~~I~~Rl~~d~~~~~~~~L~Y 48 (86)
T cd06409 3 FKFKDPKGRVHRFRLRPSESLEELRTLISQRLGDDDFETHLYALSY 48 (86)
T ss_pred EEeeCCCCCEEEEEecCCCCHHHHHHHHHHHhCCccccCCcccEEE
Confidence 4678889999999999999999999999999999874 555555
No 123
>KOG0012|consensus
Probab=79.33 E-value=2.2 Score=47.00 Aligned_cols=62 Identities=11% Similarity=0.229 Sum_probs=56.9
Q ss_pred CCceEEEEcCCCCcHHHHHHHHhhhhCCCCCCeEEEECCeecCC--CccccccCCCCCCEEEEe
Q psy15035 613 TGNTVCVNLDPASDIRNVKEMIAPKLGLKYEEVKIIFAGKELED--TTIISECDLGQQSILHAV 674 (816)
Q Consensus 613 ~g~t~~v~V~~~~TV~~LK~~I~~~~Gip~~~qrLif~Gk~L~d--~~tL~~~~I~~~stl~lv 674 (816)
..+.++++|+......+++...+..+|++.+..-|+|+++++.+ ..++.+||+..+.++.+-
T Consensus 11 ~~~~~~i~v~~dg~L~nl~aL~~~d~g~~~~~~~li~n~~~l~s~~s~~l~Q~g~~~~dsl~lr 74 (380)
T KOG0012|consen 11 FEKKFPIPVTTDGELNNLAALCWKDTGIVYDPSDLIYNPRPLVSNESQGLTQIGLKDGDSLALR 74 (380)
T ss_pred ceeeeccccccccchhhHHHHHHHHhCcccchhhcccCCCccccchhhhhhhcccccceeEecc
Confidence 56789999999999999999999999999999999999999964 578999999999988877
No 124
>KOG4250|consensus
Probab=79.03 E-value=3.1 Score=49.86 Aligned_cols=44 Identities=11% Similarity=0.188 Sum_probs=39.2
Q ss_pred ecCCceEEEEcCCCCcHHHHHHHHhhhhCCCCCCeEEEECCeec
Q psy15035 611 SNTGNTVCVNLDPASDIRNVKEMIAPKLGLKYEEVKIIFAGKEL 654 (816)
Q Consensus 611 ~~~g~t~~v~V~~~~TV~~LK~~I~~~~Gip~~~qrLif~Gk~L 654 (816)
+.++..+.+-++++.|+..+++.|...+|||+..|-|+|.|...
T Consensus 321 ~~~~~~~~~~~~~~ntl~~~~~~I~~~Tgipe~~qeLL~e~~~~ 364 (732)
T KOG4250|consen 321 MVQATSHEYYVHADNTLHSLIERISKQTGIPEGKQELLFEGGLS 364 (732)
T ss_pred eccceEEEEecChhhhHHHHHHHHHHhhCCCCccceeeeecCcc
Confidence 44667788999999999999999999999999999999987654
No 125
>PF09379 FERM_N: FERM N-terminal domain ; InterPro: IPR018979 This domain is the N-terminal ubiquitin-like structural domain of the FERM domain. The FERM domain (F for 4.1 protein, E for ezrin, R for radixin and M for moesin) is a widespread protein module involved in localising proteins to the plasma membrane []. FERM domains are found in a number of cytoskeletal-associated proteins that associate with various proteins at the interface between the plasma membrane and the cytoskeleton. The FERM domain is located at the N terminus of the majority of FERM-containing proteins [, ], which includes: Band 4.1, which links the spectrin-actin cytoskeleton of erythrocytes to the plasma membrane. Ezrin, a component of the undercoat of the microvilli plasma membrane. Moesin, which is probably involved in binding major cytoskeletal structures to the plasma membrane. Radixin, which is involved in the binding of the barbed end of actin filaments to the plasma membrane in the undercoat of the cell- to-cell adherens junction. Talin, a cytoskeletal protein concentrated in regions of cell-substratum contact and, in lymphocytes, of cell-cell contacts. Filopodin, a slime mold protein that binds actin and which is involved in the control of cell motility and chemotaxis. Merlin (or schwannomin). Protein NBL4. Unconventional myosins X, VIIa and XV, which are mutated in congenital deafness. Focal-adhesion kinases (FAKs), cytoplasmic protein tyrosine kinases involved in signalling through integrins. Janus tyrosine kinases (JAKs), cytoplasmic tyrosine kinases that are non-covalently associated with the cytoplasmic tails of receptors for cytokines or polypeptidic hormones. Non-receptor tyrosine-protein kinase TYK2. Protein-tyrosine phosphatases PTPN3 and PTPN4, enzyme that appear to act at junctions between the membrane and the cytoskeleton. Protein-tyrosine phosphatases PTPN14 and PTP-D1, PTP-RL10 and PTP2E. Caenorhabditis elegans protein phosphatase ptp-1. Ezrin, moesin, and radixin are highly related proteins (ERM protein family), but the other proteins in which the FERM domain is found do not share any region of similarity outside of this domain. ERM proteins are made of three domains, the FERM domain, a central helical domain and a C-terminal tail domain, which binds F-actin. The amino-acid sequence of the FERM domain is highly conserved among ERM proteins and is responsible for membrane association by direct binding to the cytoplasmic domain or tail of integral membrane proteins. ERM proteins are regulated by an intramolecular association of the FERM and C-terminal tail domains that masks their binding sites for other molecules. For cytoskeleton-membrane cross-linking, the dormant molecules becomes activated and the FERM domain attaches to the membrane by binding specific membrane proteins, while the last 34 residues of the tail bind actin filaments. Aside from binding to membranes, the activated FERM domain of ERM proteins can also bind the guanine nucleotide dissociation inhibitor of Rho GTPase (RhoDGI), which suggests that in addition to functioning as a cross-linker, ERM proteins may influence Rho signalling pathways. The crystal structure of the FERM domain reveals that it is composed of three structural modules (F1, F2, and F3) that together form a compact clover-shaped structure []. The FERM domain has also been called the amino-terminal domain, the 30kDa domain, 4.1N30, the membrane-cytoskeletal-linking domain, the ERM-like domain, the ezrin-like domain of the band 4.1 superfamily, the conserved N-terminal region, and the membrane attachment domain [].; PDB: 1EF1_B 1SGH_A 1E5W_A 2KC2_A 2KMA_A 3IVF_A 1H4R_B 3U8Z_A 1ISN_A 3BIN_A ....
Probab=78.34 E-value=7.3 Score=33.44 Aligned_cols=66 Identities=21% Similarity=0.246 Sum_probs=49.7
Q ss_pred EEecCCceEEEEcCCCCcHHHHHHHHhhhhCCCCCC-eEEEE----CC--eecCCCccccccCCC--CCCEEEEe
Q psy15035 609 IKSNTGNTVCVNLDPASDIRNVKEMIAPKLGLKYEE-VKIIF----AG--KELEDTTIISECDLG--QQSILHAV 674 (816)
Q Consensus 609 Vk~~~g~t~~v~V~~~~TV~~LK~~I~~~~Gip~~~-qrLif----~G--k~L~d~~tL~~~~I~--~~stl~lv 674 (816)
|+.++|...+++|+++.|+.+|=+.|+...|+...+ .-|.| +| .-|+.+.+|.+.... ...++++.
T Consensus 1 V~llD~~~~~~~v~~~~t~~~l~~~v~~~l~l~e~~~FgL~~~~~~~~~~~wL~~~k~l~~q~~~~~~~~~l~fr 75 (80)
T PF09379_consen 1 VRLLDGTTKTFEVDPKTTGQDLLEQVCDKLGLKEKEYFGLQYQVDKDGEHHWLDLDKKLKKQLKKNNPPFTLYFR 75 (80)
T ss_dssp EEESSEEEEEEEEETTSBHHHHHHHHHHHHTTSSGGGEEEEE-EBTTSSEEEE-SSSBGGGSTBTSSSSEEEEEE
T ss_pred CCCcCCCcEEEEEcCCCcHHHHHHHHHHHcCCCCccEEEEEEeecCCCcceeccCcccHHHHcCCCCCCEEEEEE
Confidence 677899999999999999999999999999986544 45667 22 336788888888777 33344443
No 126
>PF14453 ThiS-like: ThiS-like ubiquitin
Probab=77.14 E-value=10 Score=31.05 Aligned_cols=54 Identities=9% Similarity=0.228 Sum_probs=40.1
Q ss_pred eEEEEEecCCceEEEEcCCCCcHHHHHHHHhhhhCCCCCCeEEEECCeecCCCccccccCCCCCCEEEEe
Q psy15035 605 LMINIKSNTGNTVCVNLDPASDIRNVKEMIAPKLGLKYEEVKIIFAGKELEDTTIISECDLGQQSILHAV 674 (816)
Q Consensus 605 M~V~Vk~~~g~t~~v~V~~~~TV~~LK~~I~~~~Gip~~~qrLif~Gk~L~d~~tL~~~~I~~~stl~lv 674 (816)
|+|+| +|+ .+++....|..+||..+... + =.+|++|-+..++ +-|++|+.|.++
T Consensus 1 M~I~v---N~k--~~~~~~~~tl~~lr~~~k~~----~--DI~I~NGF~~~~d-----~~L~e~D~v~~I 54 (57)
T PF14453_consen 1 MKIKV---NEK--EIETEENTTLFELRKESKPD----A--DIVILNGFPTKED-----IELKEGDEVFLI 54 (57)
T ss_pred CEEEE---CCE--EEEcCCCcCHHHHHHhhCCC----C--CEEEEcCcccCCc-----cccCCCCEEEEE
Confidence 56666 334 57888999999999986642 2 2679999988874 555668888887
No 127
>PRK07194 fliG flagellar motor switch protein G; Reviewed
Probab=75.14 E-value=1.5e+02 Score=33.26 Aligned_cols=87 Identities=9% Similarity=0.077 Sum_probs=55.0
Q ss_pred hcCCHHHHHHHHHHHhHHHHHHhhCcCch-HHHHHHHHhcCCHHHHHHHHHHHhcCc----ceeeccCCcchhHHhhcC-
Q psy15035 55 KSGDENTKNEIIKALQPHVVTLLSHTTAS-PVLMYAHDQVASPAQKLAMRQELYGGL----YESTGDKKINCLGDIFEQ- 128 (816)
Q Consensus 55 ~~gs~eqr~~Ii~e~~g~v~~L~~h~~G~-~VVqk~~~~~at~eQr~~Li~e~yg~~----~~l~kd~~~~~l~~ile~- 128 (816)
.+-++++...++.+|...+..-..-..|+ ..+.++++..-.++.-..|+.++++.. +.-.+.-....|..+|.+
T Consensus 48 ~~v~~~~~~~vl~eF~~~~~~~~~~~~g~~~~~~~~L~~alg~~~a~~il~~i~~~~~~~~~~~L~~~~~~~la~~l~~E 127 (334)
T PRK07194 48 SGIKVDQARQVLQRFFDDYREQSGINGASRSYLQRTLNKALGGDIAKSLINSIYGDEIRHRMQRLQWVDPQQLARLIANE 127 (334)
T ss_pred CCCCHHHHHHHHHHHHHHHHhcCCcccchHHHHHHHHHHHcCHHHHHHHHHHHhccccCchHHHHHCCCHHHHHHHHHcc
Confidence 45689999999999988876554433343 345666655556777777888887653 222223355666666666
Q ss_pred ChhHHHHHHHHHH
Q psy15035 129 SPEMKTAILSVTK 141 (816)
Q Consensus 129 ~pekk~~Il~~l~ 141 (816)
+|.+-..|+.+|.
T Consensus 128 hPQ~iAiiL~~L~ 140 (334)
T PRK07194 128 HLQMQAVFLAFLP 140 (334)
T ss_pred CHHHHHHHHHhcC
Confidence 5666666666553
No 128
>PRK07440 hypothetical protein; Provisional
Probab=73.40 E-value=22 Score=30.31 Aligned_cols=69 Identities=14% Similarity=0.268 Sum_probs=48.7
Q ss_pred CCCceEEEEEecCCceEEEEcCCCCcHHHHHHHHhhhhCCCCCCeEEEECCeecCCCccccccCCCCCCEEEEe-eCCCC
Q psy15035 601 PDNTLMINIKSNTGNTVCVNLDPASDIRNVKEMIAPKLGLKYEEVKIIFAGKELEDTTIISECDLGQQSILHAV-KSSPE 679 (816)
Q Consensus 601 ~~~~M~V~Vk~~~g~t~~v~V~~~~TV~~LK~~I~~~~Gip~~~qrLif~Gk~L~d~~tL~~~~I~~~stl~lv-r~~gg 679 (816)
|+++|+|+| +|+. +++....||.+|-. ..++++...-+-.+|..+.- ..-.+.-+++|+.|.++ -..||
T Consensus 1 ~~~~m~i~v---NG~~--~~~~~~~tl~~lL~----~l~~~~~~vav~~N~~iv~r-~~w~~~~L~~gD~IEIv~~v~GG 70 (70)
T PRK07440 1 MSNPITLQV---NGET--RTCSSGTSLPDLLQ----QLGFNPRLVAVEYNGEILHR-QFWEQTQVQPGDRLEIVTIVGGG 70 (70)
T ss_pred CCCceEEEE---CCEE--EEcCCCCCHHHHHH----HcCCCCCeEEEEECCEEeCH-HHcCceecCCCCEEEEEEEecCC
Confidence 456777777 4564 66677889998875 46888888888899987752 22335557889999999 44443
No 129
>cd01760 RBD Ubiquitin-like domain of RBD-like S/T kinases. The ras-binding domain (RBD) of the serine/threonine kinase raf is structurally quite similar to the beta-grasp fold of ubiquitin. A raf-like RBD is also present in RGS12 and other members of a family of GTPase activating proteins and TIAM1, a guanine nucleotide exchange protein.
Probab=68.93 E-value=10 Score=32.54 Aligned_cols=45 Identities=22% Similarity=0.349 Sum_probs=39.8
Q ss_pred EEEEecCCceEEEEcCCCCcHHHHHHHHhhhhCCCCCCeEEEECC
Q psy15035 607 INIKSNTGNTVCVNLDPASDIRNVKEMIAPKLGLKYEEVKIIFAG 651 (816)
Q Consensus 607 V~Vk~~~g~t~~v~V~~~~TV~~LK~~I~~~~Gip~~~qrLif~G 651 (816)
+.|-.++|+...|.|.|..||.|+-+++.++.|+.++.-.|.+.|
T Consensus 2 ~~V~LPng~~t~V~vrpg~ti~d~L~~~c~kr~l~~~~~~v~~~~ 46 (72)
T cd01760 2 CRVYLPNGQRTVVPVRPGMSVRDVLAKACKKRGLNPECCDVFLLG 46 (72)
T ss_pred EEEECcCCCeEEEEECCCCCHHHHHHHHHHHcCCCHHHEEEEEec
Confidence 355677899999999999999999999999999999998887664
No 130
>smart00455 RBD Raf-like Ras-binding domain.
Probab=68.52 E-value=12 Score=32.01 Aligned_cols=44 Identities=18% Similarity=0.283 Sum_probs=39.5
Q ss_pred EEEecCCceEEEEcCCCCcHHHHHHHHhhhhCCCCCCeEEEECC
Q psy15035 608 NIKSNTGNTVCVNLDPASDIRNVKEMIAPKLGLKYEEVKIIFAG 651 (816)
Q Consensus 608 ~Vk~~~g~t~~v~V~~~~TV~~LK~~I~~~~Gip~~~qrLif~G 651 (816)
.|-.++|+...|.+.|..||.|+-..+.++.|+.++.-.|...|
T Consensus 3 ~v~LP~~~~~~V~vrpg~tl~e~L~~~~~kr~l~~~~~~v~~~g 46 (70)
T smart00455 3 KVHLPDNQRTVVKVRPGKTVRDALAKALKKRGLNPECCVVRLRG 46 (70)
T ss_pred EEECCCCCEEEEEECCCCCHHHHHHHHHHHcCCCHHHEEEEEcC
Confidence 45567899999999999999999999999999999998888755
No 131
>TIGR01687 moaD_arch MoaD family protein, archaeal. Members of this family appear to be archaeal versions of MoaD, subunit 1 of molybdopterin converting factor. This model has been split from the bacterial/eukaryotic equivalog model TIGR01682 because the presence of two members of this family in a substantial number of archaeal species suggests that roles might not be interchangeable.
Probab=66.27 E-value=38 Score=29.71 Aligned_cols=63 Identities=11% Similarity=0.191 Sum_probs=44.3
Q ss_pred CC-ceEEEEcCCCCcHHHHHHHHhhhhCC-----------CCCCeEEEECCeecCCCccccccCCCCCCEEEEe-eCCCC
Q psy15035 613 TG-NTVCVNLDPASDIRNVKEMIAPKLGL-----------KYEEVKIIFAGKELEDTTIISECDLGQQSILHAV-KSSPE 679 (816)
Q Consensus 613 ~g-~t~~v~V~~~~TV~~LK~~I~~~~Gi-----------p~~~qrLif~Gk~L~d~~tL~~~~I~~~stl~lv-r~~gg 679 (816)
.| ....++++ ..||.+|.+.+.++.+- ......+..+|+....+.. .-|++|+.|.++ +..||
T Consensus 13 ~g~~~~~v~~~-~~tv~~l~~~l~~~~p~~~~~~l~~~~~~~~~~~v~vN~~~v~~~~~---~~l~dgdev~i~PpvsGG 88 (88)
T TIGR01687 13 TGKKSEEIEIE-GKTVGDLLNELMARYPKEFSELFKEGLGLVPNVIILVNGRNVDWGLG---TELKDGDVVAIFPPVSGG 88 (88)
T ss_pred hCCceEEEEeC-CCCHHHHHHHHHHHCcHHHHHhCccCCcccccEEEEECCEecCccCC---CCCCCCCEEEEeCCCcCC
Confidence 34 35677876 88999999999887631 1123566778887765432 568899999999 66665
No 132
>PRK05659 sulfur carrier protein ThiS; Validated
Probab=65.14 E-value=37 Score=28.11 Aligned_cols=65 Identities=14% Similarity=0.207 Sum_probs=44.9
Q ss_pred eEEEEEecCCceEEEEcCCCCcHHHHHHHHhhhhCCCCCCeEEEECCeecCCCccccccCCCCCCEEEEe-eCCCC
Q psy15035 605 LMINIKSNTGNTVCVNLDPASDIRNVKEMIAPKLGLKYEEVKIIFAGKELEDTTIISECDLGQQSILHAV-KSSPE 679 (816)
Q Consensus 605 M~V~Vk~~~g~t~~v~V~~~~TV~~LK~~I~~~~Gip~~~qrLif~Gk~L~d~~tL~~~~I~~~stl~lv-r~~gg 679 (816)
|+|+| +|+. ++++...||.++-.. .|+++...-+..+|..+.... -.+.-+++|+.|.++ ...||
T Consensus 1 m~i~v---NG~~--~~~~~~~tl~~lL~~----l~~~~~~vav~vNg~iv~r~~-~~~~~l~~gD~vei~~~vgGG 66 (66)
T PRK05659 1 MNIQL---NGEP--RELPDGESVAALLAR----EGLAGRRVAVEVNGEIVPRSQ-HASTALREGDVVEIVHALGGG 66 (66)
T ss_pred CEEEE---CCeE--EEcCCCCCHHHHHHh----cCCCCCeEEEEECCeEeCHHH-cCcccCCCCCEEEEEEEecCC
Confidence 44544 5664 566777899988764 689998888889997775322 234447789999999 44443
No 133
>PF08144 CPL: CPL (NUC119) domain; InterPro: IPR012959 This C-terminal domain is found in Penguin-like proteins (CPL) and is associated with Pumilio like repeats [].; GO: 0003723 RNA binding
Probab=64.86 E-value=21 Score=35.13 Aligned_cols=67 Identities=15% Similarity=0.259 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHHhhCcCchHHHHHHHccCCchH-HHHHHHHHHHHHh--------HHhHhcChhhHHHHHHhhccC
Q psy15035 216 IVKELKGHLREVATSEFGHLVLVTLLDNVDDTL-LLKKALLPELLAE--------VVPLANHEYGRKVIAHLVSWC 282 (816)
Q Consensus 216 Iik~lk~~v~~La~d~~G~~Vlq~~l~~~DDt~-l~~k~Iv~eL~~~--------l~~L~~d~yG~~Vl~~Ll~~~ 282 (816)
|++.+..+...|+.+.+|+.||.-+|...++.+ ..-+.|++-+... =.-+..+++|++++-.|+.+.
T Consensus 58 Ll~~i~~~~~~ll~~~~g~~~i~eiL~~~~gdk~~a~~Aia~~~~~~~~~~~~~~e~H~i~~p~~~r~lK~Liq~~ 133 (148)
T PF08144_consen 58 LLEAIAENAEELLSSSFGCQFITEILLSATGDKSAALEAIASLAAEPLFPGDIDEEYHLIEHPFGHRMLKKLIQGD 133 (148)
T ss_pred HHHHHHHhHHHHHhcCcccHHHHHHHhccCccHHHHHHHHHHHHhhccCCCCCcCccchhcCchHHHHHHHHHHCC
Confidence 344445566667777777777766666543321 1112343333322 124668899999998888764
No 134
>smart00295 B41 Band 4.1 homologues. Also known as ezrin/radixin/moesin (ERM) protein domains. Present in myosins, ezrin, radixin, moesin, protein tyrosine phosphatases. Plasma membrane-binding domain. These proteins play structural and regulatory roles in the assembly and stabilization of specialized plasmamembrane domains. Some PDZ domain containing proteins bind one or more of this family. Now includes JAKs.
Probab=64.49 E-value=40 Score=34.03 Aligned_cols=71 Identities=17% Similarity=0.262 Sum_probs=51.6
Q ss_pred ceEEEEEecCCceEEEEcCCCCcHHHHHHHHhhhhCCCCCC-eEEEEC---C---eecCCCccccccCCC-CCCEEEEe
Q psy15035 604 TLMINIKSNTGNTVCVNLDPASDIRNVKEMIAPKLGLKYEE-VKIIFA---G---KELEDTTIISECDLG-QQSILHAV 674 (816)
Q Consensus 604 ~M~V~Vk~~~g~t~~v~V~~~~TV~~LK~~I~~~~Gip~~~-qrLif~---G---k~L~d~~tL~~~~I~-~~stl~lv 674 (816)
.+.+.|..++|.+..+.+++++|++++-+.|+.+.|++..+ .-|.+- + ..|+...+|.+.... ....+++.
T Consensus 3 ~~~~~V~l~dg~~~~~~~~~~~t~~ev~~~v~~~~~l~~~~~F~L~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~l~fr 81 (207)
T smart00295 3 PRVLKVYLLDGTTLEFEVDSSTTAEELLETVCRKLGIRESEYFGLQFEDPDEDLSHWLDPAKTLLDQDVKSEPLTLYFR 81 (207)
T ss_pred cEEEEEEecCCCEEEEEECCCCCHHHHHHHHHHHhCCCccceeEEEEEcCCCCcCeeCCCccCHHHhcCCCCCcEEEEE
Confidence 45678888999999999999999999999999999996532 234331 1 346667777776655 34455555
No 135
>smart00666 PB1 PB1 domain. Phox and Bem1p domain, present in many eukaryotic cytoplasmic signalling proteins. The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.
Probab=64.36 E-value=22 Score=30.59 Aligned_cols=45 Identities=11% Similarity=0.331 Sum_probs=38.4
Q ss_pred EEEEEecCCceEEEEcCCCCcHHHHHHHHhhhhCCCCCCeEEEECC
Q psy15035 606 MINIKSNTGNTVCVNLDPASDIRNVKEMIAPKLGLKYEEVKIIFAG 651 (816)
Q Consensus 606 ~V~Vk~~~g~t~~v~V~~~~TV~~LK~~I~~~~Gip~~~qrLif~G 651 (816)
.|.++. +|.+..+.+++..|-.+|+.+|..+.+++.....|-|..
T Consensus 3 ~vK~~~-~~~~~~~~~~~~~s~~dL~~~i~~~~~~~~~~~~l~Y~D 47 (81)
T smart00666 3 DVKLRY-GGETRRLSVPRDISFEDLRSKVAKRFGLDNQSFTLKYQD 47 (81)
T ss_pred cEEEEE-CCEEEEEEECCCCCHHHHHHHHHHHhCCCCCCeEEEEEC
Confidence 456666 678889999999999999999999999988788887864
No 136
>KOG4583|consensus
Probab=64.28 E-value=3.4 Score=45.06 Aligned_cols=73 Identities=19% Similarity=0.254 Sum_probs=53.4
Q ss_pred CCceEEEEEecCCc--eEEEEcCCCCcHHHHHHHHhhhhC--CCCCCeEEEECCeecCCCccccccCCCC--CCEEEEe
Q psy15035 602 DNTLMINIKSNTGN--TVCVNLDPASDIRNVKEMIAPKLG--LKYEEVKIIFAGKELEDTTIISECDLGQ--QSILHAV 674 (816)
Q Consensus 602 ~~~M~V~Vk~~~g~--t~~v~V~~~~TV~~LK~~I~~~~G--ip~~~qrLif~Gk~L~d~~tL~~~~I~~--~stl~lv 674 (816)
+.+..++||..+.+ -..|..+..+||++||.-++.-.- --+.+|||||.||.|.|..-|.|.-++. --++|++
T Consensus 7 e~~v~lliks~Nq~y~dl~i~~dl~wtv~~Lk~hls~VyPskpl~~dqrliYsgkllld~qcl~d~lrkq~k~Hv~hlv 85 (391)
T KOG4583|consen 7 EFPVTLLIKSPNQSYKDLSISLDLKWTVGDLKVHLSQVYPSKPLELDQRLIYSGKLLLDHQCLTDWLRKQVKEHVKHLV 85 (391)
T ss_pred CcceEEEecCCCccccceeeehhhhhhHHHHhhhHhhcCCCCCchhhHHHHhhccccccchhHHHHHHHHHHHHHHHHh
Confidence 34556778887543 456777789999999998876652 1234789999999999999998876644 3446666
No 137
>PRK05863 sulfur carrier protein ThiS; Provisional
Probab=64.18 E-value=33 Score=28.62 Aligned_cols=64 Identities=13% Similarity=0.212 Sum_probs=44.9
Q ss_pred eEEEEEecCCceEEEEcCCCCcHHHHHHHHhhhhCCCCCCeEEEECCeecCCCccccccCCCCCCEEEEe-eCCCC
Q psy15035 605 LMINIKSNTGNTVCVNLDPASDIRNVKEMIAPKLGLKYEEVKIIFAGKELEDTTIISECDLGQQSILHAV-KSSPE 679 (816)
Q Consensus 605 M~V~Vk~~~g~t~~v~V~~~~TV~~LK~~I~~~~Gip~~~qrLif~Gk~L~d~~tL~~~~I~~~stl~lv-r~~gg 679 (816)
|+|+| +|+. .++++..|+.+|-+. .++|+...-+..+|..+..+.- ..+ +++|+.|.++ ...||
T Consensus 1 m~i~v---NG~~--~~~~~~~tl~~ll~~----l~~~~~~vav~~N~~iv~r~~~-~~~-L~~gD~ieIv~~VgGG 65 (65)
T PRK05863 1 MIVVV---NEEQ--VEVDEQTTVAALLDS----LGFPEKGIAVAVDWSVLPRSDW-ATK-LRDGARLEVVTAVQGG 65 (65)
T ss_pred CEEEE---CCEE--EEcCCCCcHHHHHHH----cCCCCCcEEEEECCcCcChhHh-hhh-cCCCCEEEEEeeccCC
Confidence 44555 5565 455577888888765 6899999999999997753222 235 8999999999 44443
No 138
>TIGR01682 moaD molybdopterin converting factor, subunit 1, non-archaeal. The C-terminal Gly-Gly of this model is critical to function.
Probab=63.72 E-value=41 Score=29.02 Aligned_cols=62 Identities=16% Similarity=0.191 Sum_probs=44.4
Q ss_pred CCc-eEEEEcCCC-CcHHHHHHHHhhhhC-CC--CCCeEEEECCeecCCCccccccCCCCCCEEEEe-eCCCC
Q psy15035 613 TGN-TVCVNLDPA-SDIRNVKEMIAPKLG-LK--YEEVKIIFAGKELEDTTIISECDLGQQSILHAV-KSSPE 679 (816)
Q Consensus 613 ~g~-t~~v~V~~~-~TV~~LK~~I~~~~G-ip--~~~qrLif~Gk~L~d~~tL~~~~I~~~stl~lv-r~~gg 679 (816)
.|+ ...++++.. .||.+|...+..+.+ +- .....+.-+|+...+ +.-|++|+.|.++ +..||
T Consensus 13 ~g~~~~~~~~~~~~~tv~~L~~~L~~~~p~l~~~~~~~~v~vn~~~v~~-----~~~l~dgDevai~PpvsGG 80 (80)
T TIGR01682 13 AGTDEETLELPDESTTVGELKEHLAKEGPELAASRGQVMVAVNEEYVTD-----DALLNEGDEVAFIPPVSGG 80 (80)
T ss_pred hCCCeEEEECCCCCcCHHHHHHHHHHhCchhhhhccceEEEECCEEcCC-----CcCcCCCCEEEEeCCCCCC
Confidence 344 357888876 899999999988864 11 123456678887764 5678889999999 66654
No 139
>PF12754 Blt1: Cell-cycle control medial ring component; InterPro: IPR024737 During size-dependent cell cycle transitions controlled by the ubiquitous cyclin-dependent kinase Cdk1, Blt1 has been shown to co-localise with Cdr2 in the medial interphase nodes, as well as with Mid1 which was previously shown to localise to similar interphase structures. Physical interactions between Blt1-Mid1, Blt1-Cdr2 and Cdr2-Mid1 were detected, indicating that medial cortical nodes are formed by the ordered, Cdr2-dependent assembly of multiple interacting proteins during interphase[].; PDB: 2LO0_A.
Probab=62.96 E-value=2.4 Score=46.08 Aligned_cols=64 Identities=14% Similarity=0.404 Sum_probs=0.0
Q ss_pred CceEEEEEecCCceEEEEcC---C--CCcHHHHHHHHhh----------hhCCCCCCeE-----EEECCeecCCCccccc
Q psy15035 603 NTLMINIKSNTGNTVCVNLD---P--ASDIRNVKEMIAP----------KLGLKYEEVK-----IIFAGKELEDTTIISE 662 (816)
Q Consensus 603 ~~M~V~Vk~~~g~t~~v~V~---~--~~TV~~LK~~I~~----------~~Gip~~~qr-----Lif~Gk~L~d~~tL~~ 662 (816)
..+.|.+|.+....+.+.+. + +.||.++|..++. .+++|.+.++ |+|+.|.+.|+.||.+
T Consensus 77 ~sItV~Lks~rnp~l~i~L~~~~plattSv~dlk~~v~~rv~~~~~~~~~~~vp~dKik~~~~~lL~~kkPv~~~ktl~e 156 (309)
T PF12754_consen 77 KSITVHLKSLRNPPLDISLPNVPPLATTSVQDLKDAVQQRVHPSQATYDETRVPLDKIKNFRCRLLYKKKPVGDSKTLAE 156 (309)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ceEEEEeecCCCCCceeEeCCCCcCCcCcHHHHHHHHHhhhcccccccccccCCHHHhhhhhhhheecCccCCCcCcHHH
Confidence 35667777765554433322 3 6899999999999 8999999999 9999999999999888
Q ss_pred cCCC
Q psy15035 663 CDLG 666 (816)
Q Consensus 663 ~~I~ 666 (816)
..=.
T Consensus 157 ~l~~ 160 (309)
T PF12754_consen 157 VLAD 160 (309)
T ss_dssp ----
T ss_pred HHhc
Confidence 6543
No 140
>TIGR00207 fliG flagellar motor switch protein FliG. The fliG protein along with fliM and fliN interact to form the switch complex of the bacterial flagellar motor located at the base of the basal body. This complex interacts with chemotaxis proteins (eg CHEY). In addition the complex interacts with other components of the motor that determine the direction of flagellar rotation. The model contains putative members of the fliG family at scores of less than 100 from Agrobacterium radiobacter and Sinorhizobium meliloti as well as fliG-like genes from treponema pallidum and Borrelia burgdorferi. That is why the suggested cutoff is set at 20 but was set at 100 to construct the family.
Probab=61.73 E-value=1.9e+02 Score=32.37 Aligned_cols=155 Identities=13% Similarity=0.189 Sum_probs=86.3
Q ss_pred cCCHHHHHHHHHHHhcCccee--eccCCcchhHHhhcC--ChhHHHHHHHHHHHHHHHhhhhhcccCCcchhhhHHHhhh
Q psy15035 93 VASPAQKLAMRQELYGGLYES--TGDKKINCLGDIFEQ--SPEMKTAILSVTKKTILKSLQKTQVTGSALLHAVLLDFIS 168 (816)
Q Consensus 93 ~at~eQr~~Li~e~yg~~~~l--~kd~~~~~l~~ile~--~pekk~~Il~~l~~~l~~lv~K~~~~~~~ivh~vl~ey~~ 168 (816)
.-++++...+++||+...-.. ....+...+.++|+. .+++-..|++.+.... .. +-.|+++.
T Consensus 51 ~v~~~~~~~vl~eF~~~~~~~~~~~~g~~~~~~~~L~~alg~~~a~~il~~i~~~~---------~~-----~~~~~~L~ 116 (338)
T TIGR00207 51 QIDNQQKDDVLEEFEQIAEAQAYINIGGLDYAREVLEKALGEEKAASILNDLTSSL---------QT-----APGFEFLR 116 (338)
T ss_pred CCCHHHHHHHHHHHHHHHHhcCCccCChHHHHHHHHHHhcCHHHHHHHHHHHhccc---------cc-----CchhHHHH
Confidence 557777888888886543211 112234455777776 3556666666554321 00 11245555
Q ss_pred cCCChhhHHHHHHHhCCCCccccccCcChHHHHHHHHhhcCHHHHHHHHHHHH------------------HHHHHHhh-
Q psy15035 169 HSSDSPDLMEVLEMLAPLPLLPFVHSKAGASVAMHIIWNATNKLKKKIVKELK------------------GHLREVAT- 229 (816)
Q Consensus 169 ~~~~~~~~~~iie~l~~~~l~~L~~tk~Gs~Vv~~cl~~~~~kdRk~Iik~lk------------------~~v~~La~- 229 (816)
..++ +....++..=++. ...++-.+=+...+-..|.+-+++.|..|+..|- ..+..+..
T Consensus 117 ~~~~-~~la~~l~~EhPQ-~iAliLs~L~p~~AA~VL~~Lp~~~~~ei~~ria~l~~vs~~~i~~ie~~L~~~~~~~~~~ 194 (338)
T TIGR00207 117 KAEP-QQIADFIQQEHPQ-TIALILSHLDPAQAADILSLFPEEVQAEVARRIATMGRTSPEVVAEVERVLEGKLDSLNSD 194 (338)
T ss_pred CCCH-HHHHHHHHccCHH-HHHHHHHcCCHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhccc
Confidence 5555 5555555544455 5555555556677777777788888877775542 12222221
Q ss_pred --CcCchHHHHHHHccCCchHHHHHHHHHHHHHhHHhH
Q psy15035 230 --SEFGHLVLVTLLDNVDDTLLLKKALLPELLAEVVPL 265 (816)
Q Consensus 230 --d~~G~~Vlq~~l~~~DDt~l~~k~Iv~eL~~~l~~L 265 (816)
..-|...+..+|...|-.. .+.|+..|...=+++
T Consensus 195 ~~~~gG~~~~a~ILN~~~~~~--~~~il~~L~~~dp~l 230 (338)
T TIGR00207 195 YTKMGGVRAVAEIINLMDRKT--EKTIITSLEEFDPEL 230 (338)
T ss_pred cccCChHHHHHHHHHhCCchH--HHHHHHHHHHhCHHH
Confidence 2236677778888876442 556777776533333
No 141
>cd06407 PB1_NLP A PB1 domain is present in NIN like proteins (NLP), a key enzyme in a process of establishment of symbiosis betweeen legumes and nitrogen fixing bacteria (Rhizobium). The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes like osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-inte
Probab=61.44 E-value=27 Score=30.82 Aligned_cols=46 Identities=13% Similarity=0.245 Sum_probs=36.2
Q ss_pred eEEEEEecCCceEEEEcCCCCcHHHHHHHHhhhhCCCC-CCeEEEECC
Q psy15035 605 LMINIKSNTGNTVCVNLDPASDIRNVKEMIAPKLGLKY-EEVKIIFAG 651 (816)
Q Consensus 605 M~V~Vk~~~g~t~~v~V~~~~TV~~LK~~I~~~~Gip~-~~qrLif~G 651 (816)
|+|.+.. +|..+.+.++++.+..+|++.|+++.++.. ....|-|-.
T Consensus 1 ~~vK~~~-~~d~~r~~l~~~~~~~~L~~~i~~r~~~~~~~~f~LkY~D 47 (82)
T cd06407 1 VRVKATY-GEEKIRFRLPPSWGFTELKQEIAKRFKLDDMSAFDLKYLD 47 (82)
T ss_pred CEEEEEe-CCeEEEEEcCCCCCHHHHHHHHHHHhCCCCCCeeEEEEEC
Confidence 3455544 567899999999999999999999999875 556666644
No 142
>PRK06944 sulfur carrier protein ThiS; Provisional
Probab=61.02 E-value=55 Score=26.89 Aligned_cols=64 Identities=14% Similarity=0.175 Sum_probs=41.3
Q ss_pred eEEEEEecCCceEEEEcCCCCcHHHHHHHHhhhhCCCCCCeEEEECCeecCCCccccccCCCCCCEEEEe-eCCCC
Q psy15035 605 LMINIKSNTGNTVCVNLDPASDIRNVKEMIAPKLGLKYEEVKIIFAGKELEDTTIISECDLGQQSILHAV-KSSPE 679 (816)
Q Consensus 605 M~V~Vk~~~g~t~~v~V~~~~TV~~LK~~I~~~~Gip~~~qrLif~Gk~L~d~~tL~~~~I~~~stl~lv-r~~gg 679 (816)
|+|+| +|+. +++++..||.++.+.+ ++++ ...+..+|.....+. -.+.-+++|+.|.++ ...||
T Consensus 1 m~i~v---Ng~~--~~~~~~~tl~~ll~~l----~~~~-~~~v~vN~~~v~~~~-~~~~~L~~gD~vei~~~v~GG 65 (65)
T PRK06944 1 MDIQL---NQQT--LSLPDGATVADALAAY----GARP-PFAVAVNGDFVARTQ-HAARALAAGDRLDLVQPVAGG 65 (65)
T ss_pred CEEEE---CCEE--EECCCCCcHHHHHHhh----CCCC-CeEEEECCEEcCchh-cccccCCCCCEEEEEeeccCC
Confidence 44554 4554 5667788999998765 4442 456778888764321 223347889999999 55554
No 143
>cd00565 ThiS ThiaminS ubiquitin-like sulfur carrier protein. ThiS (ThiaminS) is a sulfur carrier protein involved in thiamin biosynthesis in bacteria. The ThiS fold, like those of two closely related proteins MoaD and Urm1, is similar to that of ubiquitin although there is little or no sequence similarity.
Probab=60.87 E-value=38 Score=28.04 Aligned_cols=60 Identities=13% Similarity=0.230 Sum_probs=43.3
Q ss_pred CCceEEEEcCCCCcHHHHHHHHhhhhCCCCCCeEEEECCeecCCCccccccCCCCCCEEEEe-eCCCC
Q psy15035 613 TGNTVCVNLDPASDIRNVKEMIAPKLGLKYEEVKIIFAGKELEDTTIISECDLGQQSILHAV-KSSPE 679 (816)
Q Consensus 613 ~g~t~~v~V~~~~TV~~LK~~I~~~~Gip~~~qrLif~Gk~L~d~~tL~~~~I~~~stl~lv-r~~gg 679 (816)
+|+. ++++...||.+|.+.+ +++++...+..+|+....+ .-.+.-|.+|+.|.++ ...||
T Consensus 5 Ng~~--~~~~~~~tv~~ll~~l----~~~~~~i~V~vNg~~v~~~-~~~~~~L~~gD~V~ii~~v~GG 65 (65)
T cd00565 5 NGEP--REVEEGATLAELLEEL----GLDPRGVAVALNGEIVPRS-EWASTPLQDGDRIEIVTAVGGG 65 (65)
T ss_pred CCeE--EEcCCCCCHHHHHHHc----CCCCCcEEEEECCEEcCHH-HcCceecCCCCEEEEEEeccCC
Confidence 3454 5667788999998764 6888888888999887543 2223457889999999 55554
No 144
>PF11620 GABP-alpha: GA-binding protein alpha chain; InterPro: IPR024668 GA-binding protein alpha is a transcription factor capable of interacting with purine rich repeats (GA repeats). This N-terminal domain found in the transcription factor GABP alpha consists of a five-stranded beta-sheet crossed by a distorted helix and has been termed OST domain. The surface of the GABP alpha OST domain contains two clusters of negatively-charged residues suggesting there are positively-charged partner proteins. The OST domain binds to the CH1 and CH3 domains of the co-activator histone acetyltransferase CBP/p300 [].; PDB: 2JUO_A.
Probab=60.50 E-value=18 Score=32.01 Aligned_cols=59 Identities=10% Similarity=0.271 Sum_probs=42.9
Q ss_pred eEEEEcCCCCcHHHHHHHHhhhhCCCCCCeEEEECCeecCCCccccccCCCCCCEEEEe
Q psy15035 616 TVCVNLDPASDIRNVKEMIAPKLGLKYEEVKIIFAGKELEDTTIISECDLGQQSILHAV 674 (816)
Q Consensus 616 t~~v~V~~~~TV~~LK~~I~~~~Gip~~~qrLif~Gk~L~d~~tL~~~~I~~~stl~lv 674 (816)
.+...++-..++..||..++.+.|+.-+...+...+..|+++.+|-+-+++-.-+|.+.
T Consensus 4 vI~q~mDI~epl~~Lk~lLe~Rl~~~L~~~~f~LQD~~L~~~k~L~dQcVqgeGlVQln 62 (88)
T PF11620_consen 4 VIMQHMDIREPLSTLKKLLERRLGISLSDYEFWLQDIQLEPHKSLVDQCVQGEGLVQLN 62 (88)
T ss_dssp EEEEEEESSSBGGGHHHHSHHHH-S--SS-EEEETTEE--TTSBTTTSS----SEEEEE
T ss_pred eEEEEEecCCcHHHHHHHHHHhhCCCcCCCeEEeccceecCCccHHHhhccccCEEEEE
Confidence 35566777889999999999999999999899889988999999999999888888877
No 145
>PF02597 ThiS: ThiS family; InterPro: IPR003749 ThiS (thiaminS) is a 66 aa protein involved in sulphur transfer. ThiS is coded in the thiCEFSGH operon in Escherichia coli. This family of proteins have two conserved Glycines at the COOH terminus. Thiocarboxylate is formed at the last G in the activation process. Sulphur is transferred from ThiI to ThiS in a reaction catalysed by IscS []. MoaD, a protein involved in sulphur transfer during molybdopterin synthesis, is about the same length and shows limited sequence similarity to ThiS. Both have the conserved GG at the COOH end.; PDB: 1JW9_D 1JWB_D 1JWA_D 3BII_D 1NVI_D 1FMA_D 1FM0_D 2QIE_G 2Q5W_D 2K5P_A ....
Probab=59.59 E-value=30 Score=29.20 Aligned_cols=62 Identities=15% Similarity=0.138 Sum_probs=48.6
Q ss_pred eEEEEcCCCCcHHHHHHHHhhhhCC--CCCCeEEEECCeecCCCccccccCCCCCCEEEEe-eCCCC
Q psy15035 616 TVCVNLDPASDIRNVKEMIAPKLGL--KYEEVKIIFAGKELEDTTIISECDLGQQSILHAV-KSSPE 679 (816)
Q Consensus 616 t~~v~V~~~~TV~~LK~~I~~~~Gi--p~~~qrLif~Gk~L~d~~tL~~~~I~~~stl~lv-r~~gg 679 (816)
...+.+....||.+|.+.+..+.+- ......+..+|+...+ .-.+.-+++|+.|.++ ...||
T Consensus 13 ~~~~~~~~~~tv~~ll~~l~~~~p~~~~~~~~~v~vN~~~v~~--~~~~~~l~~gD~V~i~ppvsGG 77 (77)
T PF02597_consen 13 EEEIEVPEGSTVRDLLEALAERYPELALRDRVAVAVNGEIVPD--DGLDTPLKDGDEVAILPPVSGG 77 (77)
T ss_dssp EEEEEESSTSBHHHHHHHHCHHTGGGHTTTTEEEEETTEEEGG--GTTTSBEETTEEEEEEESTSTS
T ss_pred CeEEecCCCCcHHHHHHHHHhhccccccCccEEEEECCEEcCC--ccCCcCcCCCCEEEEECCCCCC
Confidence 5678889999999999999887741 3356778899998888 3556667889999999 66665
No 146
>PTZ00380 microtubule-associated protein (MAP); Provisional
Probab=59.36 E-value=14 Score=35.05 Aligned_cols=66 Identities=9% Similarity=0.174 Sum_probs=46.4
Q ss_pred hhhhhhhhheeccCCCCCceEEEEEecCCceEEEEcCCCCcHHHHHHHHhhhhCCCCCCeEEEECCeecCCCccccc
Q psy15035 586 SVLNEILHLFWISRKPDNTLMINIKSNTGNTVCVNLDPASDIRNVKEMIAPKLGLKYEEVKIIFAGKELEDTTIISE 662 (816)
Q Consensus 586 ~yp~~~p~~~~~~~~~~~~M~V~Vk~~~g~t~~v~V~~~~TV~~LK~~I~~~~Gip~~~qrLif~Gk~L~d~~tL~~ 662 (816)
.||++.|-+- -+... .+.+.--+-|+.+.||+++...|..+.++++++.-|+.++..+..+.++++
T Consensus 23 kyPdrIPVIv--Ek~~~---------s~dK~KfllVP~d~tV~qF~~iIRkrl~l~~~k~flfVnn~lp~~s~~mg~ 88 (121)
T PTZ00380 23 KYPGHVAVVV--EAAEK---------AGSKVHFLALPRDATVAELEAAVRQALGTSAKKVTLAIEGSTPAVTATVGD 88 (121)
T ss_pred HCCCccEEEE--eecCC---------CCCceEEEEcCCCCcHHHHHHHHHHHcCCChhHEEEEECCccCCccchHHH
Confidence 5888888663 22111 113444446999999999999999999999998655566655566667665
No 147
>PRK05686 fliG flagellar motor switch protein G; Validated
Probab=59.12 E-value=3e+02 Score=30.81 Aligned_cols=148 Identities=19% Similarity=0.218 Sum_probs=88.4
Q ss_pred CCHHHHHHHHHHHhcCcce--eeccCCcchhHHhhcC--ChhHHHHHHHHHHHHHHHhhhhhcccCCcchhhhHHHhhhc
Q psy15035 94 ASPAQKLAMRQELYGGLYE--STGDKKINCLGDIFEQ--SPEMKTAILSVTKKTILKSLQKTQVTGSALLHAVLLDFISH 169 (816)
Q Consensus 94 at~eQr~~Li~e~yg~~~~--l~kd~~~~~l~~ile~--~pekk~~Il~~l~~~l~~lv~K~~~~~~~ivh~vl~ey~~~ 169 (816)
-++++...++++|+...-. .....+...+.++++. .+++-..|++.+.+. + . .-.|+++..
T Consensus 55 vs~~~~~~vL~ef~~~~~~~~~~~~gg~~~~~~iL~~~l~~~~a~~il~~i~~~------~-~--------~~~fe~L~~ 119 (339)
T PRK05686 55 VSPEQVEAVLEEFEDEFEAGAYILMGGIDYARSLLEKALGEEKADSILERILES------L-G--------TSGFDFLRK 119 (339)
T ss_pred CCHHHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHcCHHHHHHHHHHHhcc------c-c--------CchHHHHhc
Confidence 3455666667777655321 1222355668888885 455666677666532 1 0 114566666
Q ss_pred CCChhhHHHHHHHhCCCCccccccCcChHHHHHHHHhhcCHHHHHHHHHHHH------------------HHHHHHh---
Q psy15035 170 SSDSPDLMEVLEMLAPLPLLPFVHSKAGASVAMHIIWNATNKLKKKIVKELK------------------GHLREVA--- 228 (816)
Q Consensus 170 ~~~~~~~~~iie~l~~~~l~~L~~tk~Gs~Vv~~cl~~~~~kdRk~Iik~lk------------------~~v~~La--- 228 (816)
.++ +....++....+. ...++-.+-...+...+|.+-++..|..|+..|- ..+..+.
T Consensus 120 ld~-~~l~~lL~~Ehpq-tiA~iLs~l~~~~aa~vL~~l~~~~~~~v~~ria~l~~v~~~~~~~i~~~L~~~l~~~~~~~ 197 (339)
T PRK05686 120 MDP-QQLANFIRNEHPQ-TIALILSYLKPDQAAEILSLLPEELRADVMMRIATLEGVSPEALKEVEEVLEKKLSSMANAD 197 (339)
T ss_pred CCH-HHHHHHHHhcCHH-HHHHHHhCCCHHHHHHHHHhCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHHHhhccccc
Confidence 666 7777777777766 6666666666667777777777777777775552 1222211
Q ss_pred -hCcCchHHHHHHHccCCchHHHHHHHHHHHHH
Q psy15035 229 -TSEFGHLVLVTLLDNVDDTLLLKKALLPELLA 260 (816)
Q Consensus 229 -~d~~G~~Vlq~~l~~~DDt~l~~k~Iv~eL~~ 260 (816)
...-|...+-.+|...|... .+.|+..|..
T Consensus 198 ~~~~~g~~~~a~Iln~~~~~~--~~~il~~L~~ 228 (339)
T PRK05686 198 RTKMGGVKTVAEILNNLDRQT--EKTILESLEE 228 (339)
T ss_pred ccccCcHHHHHHHHhcCCchH--HHHHHHHHHh
Confidence 23357777778888776542 4556666654
No 148
>PF14451 Ub-Mut7C: Mut7-C ubiquitin
Probab=57.35 E-value=34 Score=30.11 Aligned_cols=52 Identities=21% Similarity=0.370 Sum_probs=43.4
Q ss_pred CceEEEEcCCCCcHHHHHHHHhhhhCCCCCCeEEEE-CCeecCCCccccccCCCCCCEEEEe
Q psy15035 614 GNTVCVNLDPASDIRNVKEMIAPKLGLKYEEVKIIF-AGKELEDTTIISECDLGQQSILHAV 674 (816)
Q Consensus 614 g~t~~v~V~~~~TV~~LK~~I~~~~Gip~~~qrLif-~Gk~L~d~~tL~~~~I~~~stl~lv 674 (816)
+..+.+.+++..||.++-+. .|||..+..+|+ +|+.-.- +|-+++|+.|.+.
T Consensus 22 ~~~~~~~~~~~~tvkd~IEs----LGVP~tEV~~i~vNG~~v~~-----~~~~~~Gd~v~V~ 74 (81)
T PF14451_consen 22 GGPFTHPFDGGATVKDVIES----LGVPHTEVGLILVNGRPVDF-----DYRLKDGDRVAVY 74 (81)
T ss_pred CCceEEecCCCCcHHHHHHH----cCCChHHeEEEEECCEECCC-----cccCCCCCEEEEE
Confidence 45788899999999998875 899999998875 8887765 4777889999988
No 149
>PRK06083 sulfur carrier protein ThiS; Provisional
Probab=55.86 E-value=63 Score=28.64 Aligned_cols=66 Identities=11% Similarity=0.124 Sum_probs=46.8
Q ss_pred ceEEEEEecCCceEEEEcCCCCcHHHHHHHHhhhhCCCCCCeEEEECCeecCCCccccccCCCCCCEEEEe-eCCCC
Q psy15035 604 TLMINIKSNTGNTVCVNLDPASDIRNVKEMIAPKLGLKYEEVKIIFAGKELEDTTIISECDLGQQSILHAV-KSSPE 679 (816)
Q Consensus 604 ~M~V~Vk~~~g~t~~v~V~~~~TV~~LK~~I~~~~Gip~~~qrLif~Gk~L~d~~tL~~~~I~~~stl~lv-r~~gg 679 (816)
.|+|+| +|+. .+++...||.+|-+. .++++...-+-.+|..+. ...-+++-|.+|+.|.++ ...||
T Consensus 18 ~m~I~V---NG~~--~~~~~~~tl~~LL~~----l~~~~~~vAVevNg~iVp-r~~w~~t~L~egD~IEIv~~VgGG 84 (84)
T PRK06083 18 LITISI---NDQS--IQVDISSSLAQIIAQ----LSLPELGCVFAINNQVVP-RSEWQSTVLSSGDAISLFQAIAGG 84 (84)
T ss_pred eEEEEE---CCeE--EEcCCCCcHHHHHHH----cCCCCceEEEEECCEEeC-HHHcCcccCCCCCEEEEEEEecCC
Confidence 455555 5664 556677889888775 588887777789998873 344556668899999999 44443
No 150
>PF00564 PB1: PB1 domain; InterPro: IPR000270 The Phox and Bem1p domain, is present in many eukaryotic cytoplasmic signalling proteins. The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.; GO: 0005515 protein binding; PDB: 1IPG_A 1IP9_A 2KFK_A 1WMH_A 1VD2_A 1WI0_A 1OEY_C 1PQS_A 1Q1O_A 1TZ1_A ....
Probab=55.72 E-value=35 Score=29.40 Aligned_cols=46 Identities=15% Similarity=0.382 Sum_probs=37.5
Q ss_pred eEEEEEecCCceEE-EEcCCCCcHHHHHHHHhhhhCCCCCCeEEEECC
Q psy15035 605 LMINIKSNTGNTVC-VNLDPASDIRNVKEMIAPKLGLKYEEVKIIFAG 651 (816)
Q Consensus 605 M~V~Vk~~~g~t~~-v~V~~~~TV~~LK~~I~~~~Gip~~~qrLif~G 651 (816)
+.|.+... |.... +.+.++.|..+|+..|+.+.|.+.....|-|..
T Consensus 2 ~~vK~~~~-~~~~~~~~~~~~~s~~~L~~~i~~~~~~~~~~~~l~Y~D 48 (84)
T PF00564_consen 2 VRVKVRYG-GDIRRIISLPSDVSFDDLRSKIREKFGLLDEDFQLKYKD 48 (84)
T ss_dssp EEEEEEET-TEEEEEEEECSTSHHHHHHHHHHHHHTTSTSSEEEEEEE
T ss_pred EEEEEEEC-CeeEEEEEcCCCCCHHHHHHHHHHHhCCCCccEEEEeeC
Confidence 45666664 44444 899999999999999999999998888998854
No 151
>KOG0429|consensus
Probab=55.36 E-value=11 Score=38.87 Aligned_cols=66 Identities=18% Similarity=0.148 Sum_probs=47.5
Q ss_pred hhhhHHHHHHHhhhcCCCCCcceeccccCCCCcccceEEEEeCCCCCCCCCcchhhhhchhhhhhh--hhhhh
Q psy15035 524 PRNFRLLEELEHGQRGVGDGTISWGLENDDDMTLTHWTGMIIGPPRTSTTGHIMDTIIGYIMSVLN--EILHL 594 (816)
Q Consensus 524 p~~~~l~~el~~~~~~~~~~~~s~gl~~~~d~~l~~w~~~i~GP~~t~~e~~~~~l~i~f~~~yp~--~~p~~ 594 (816)
..-..|+.|+....+..-+| +=+ -++=.+=..|=|+|++-.+ .|.|++|+++|-.|++||. .-|++
T Consensus 19 ~qey~llAEf~lV~~ekL~g-Iyv---iPSyan~l~WFGViFvr~G-iyaggVFRFtIliPdnfPdd~dlPrv 86 (258)
T KOG0429|consen 19 LQEYALLAEFVLVCREKLDG-IYV---IPSYANKLLWFGVIFVRKG-IYAGGVFRFTILIPDNFPDDSDLPRV 86 (258)
T ss_pred HHHHHHHHHHHHHHhccCCc-eEE---cccccccceEEEEEEEecc-cccCceEEEEEEcCccCCCcCCCCeE
Confidence 33456899999888666666 333 2343444589999996554 6889999999999999994 34444
No 152
>TIGR01683 thiS thiamine biosynthesis protein ThiS. This model represents ThiS, a small thiamine-biosynthesis protein related to MoaD, a molybdenum cofactor biosynthesis protein. Both proteins are involved in sulfur transfer. ThiS has a conserved Gly-Gly C-terminus that is modified, in reactions requiring ThiI, ThiF, IscS, and a sulfur atom from Cys, into the thiocarboxylate that provides the sulfur for thiazole biosynthesis.
Probab=52.70 E-value=60 Score=26.79 Aligned_cols=60 Identities=17% Similarity=0.221 Sum_probs=42.3
Q ss_pred CCceEEEEcCCCCcHHHHHHHHhhhhCCCCCCeEEEECCeecCCCccccccCCCCCCEEEEe-eCCCC
Q psy15035 613 TGNTVCVNLDPASDIRNVKEMIAPKLGLKYEEVKIIFAGKELEDTTIISECDLGQQSILHAV-KSSPE 679 (816)
Q Consensus 613 ~g~t~~v~V~~~~TV~~LK~~I~~~~Gip~~~qrLif~Gk~L~d~~tL~~~~I~~~stl~lv-r~~gg 679 (816)
+|+. ++++...||.+|.+. .+++++...+..+|+.+..+ .-.++-|++|+.|.++ ...||
T Consensus 4 Ng~~--~~~~~~~tv~~ll~~----l~~~~~~v~v~vN~~iv~~~-~~~~~~L~~gD~veii~~V~GG 64 (64)
T TIGR01683 4 NGEP--VEVEDGLTLAALLES----LGLDPRRVAVAVNGEIVPRS-EWDDTILKEGDRIEIVTFVGGG 64 (64)
T ss_pred CCeE--EEcCCCCcHHHHHHH----cCCCCCeEEEEECCEEcCHH-HcCceecCCCCEEEEEEeccCC
Confidence 4554 555677899999886 46778777788999887422 1224568889999999 55554
No 153
>PRK08053 sulfur carrier protein ThiS; Provisional
Probab=52.06 E-value=94 Score=25.87 Aligned_cols=65 Identities=5% Similarity=0.011 Sum_probs=43.9
Q ss_pred eEEEEEecCCceEEEEcCCCCcHHHHHHHHhhhhCCCCCCeEEEECCeecCCCccccccCCCCCCEEEEe-eCCCC
Q psy15035 605 LMINIKSNTGNTVCVNLDPASDIRNVKEMIAPKLGLKYEEVKIIFAGKELEDTTIISECDLGQQSILHAV-KSSPE 679 (816)
Q Consensus 605 M~V~Vk~~~g~t~~v~V~~~~TV~~LK~~I~~~~Gip~~~qrLif~Gk~L~d~~tL~~~~I~~~stl~lv-r~~gg 679 (816)
|+|+| +|+. +++....||.+|.+. .+.++....+-.+|..+.. ..-.+.-|.+|+.|.++ ...||
T Consensus 1 m~i~v---Ng~~--~~~~~~~tl~~ll~~----l~~~~~~vaVavN~~iv~r-~~w~~~~L~~gD~Ieii~~v~GG 66 (66)
T PRK08053 1 MQILF---NDQP--MQCAAGQTVHELLEQ----LNQLQPGAALAINQQIIPR-EQWAQHIVQDGDQILLFQVIAGG 66 (66)
T ss_pred CEEEE---CCeE--EEcCCCCCHHHHHHH----cCCCCCcEEEEECCEEeCh-HHcCccccCCCCEEEEEEEccCC
Confidence 45555 5565 455677899998865 4666666778899988752 12234458889999999 55554
No 154
>cd06411 PB1_p51 The PB1 domain is present in the p51 protein, a homolog of the p67 protein. p51 plays an important role in NADPH oxidase activation during phagosytosis. The PB1 domain is a modular domain mediating specific protein-protein interaction in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain mo
Probab=50.50 E-value=42 Score=29.32 Aligned_cols=36 Identities=11% Similarity=0.305 Sum_probs=33.5
Q ss_pred eEEEEcCCCCcHHHHHHHHhhhhCCCCCCeEEEECC
Q psy15035 616 TVCVNLDPASDIRNVKEMIAPKLGLKYEEVKIIFAG 651 (816)
Q Consensus 616 t~~v~V~~~~TV~~LK~~I~~~~Gip~~~qrLif~G 651 (816)
|+.+.+.+..+..+|..+|+++...|++...|.|.-
T Consensus 8 TVai~v~~g~~y~~L~~~ls~kL~l~~~~~~LSY~~ 43 (78)
T cd06411 8 TVALRAPRGADVSSLRALLSQALPQQAQRGQLSYRA 43 (78)
T ss_pred EEEEEccCCCCHHHHHHHHHHHhcCChhhcEEEecC
Confidence 778899999999999999999999999999998864
No 155
>smart00154 ZnF_AN1 AN1-like Zinc finger. Zinc finger at the C-terminus of An1, a ubiquitin-like protein in Xenopus laevis.
Probab=49.43 E-value=13 Score=27.93 Aligned_cols=26 Identities=27% Similarity=0.692 Sum_probs=20.0
Q ss_pred eccccCCCCCCCCcccceeEeecccccccCCCCCcccccc
Q psy15035 758 SCHCTEEHCTTGPVSWAEFYFKCAQHVSANMNQVDECLPL 797 (816)
Q Consensus 758 ~g~c~~~~c~~~~~~~a~f~fkc~~h~~~~~~~~~~~~~l 797 (816)
...|. .|.+ .| |++|+.. |++.+.-+
T Consensus 12 ~f~C~--~C~~------~F---C~~HR~~---e~H~C~~~ 37 (39)
T smart00154 12 GFKCR--HCGN------LF---CGEHRLP---EDHDCPGD 37 (39)
T ss_pred CeECC--ccCC------cc---ccccCCc---cccCCccc
Confidence 56788 7866 78 9999997 68777544
No 156
>KOG2213|consensus
Probab=48.17 E-value=4.8e+02 Score=29.92 Aligned_cols=107 Identities=17% Similarity=0.131 Sum_probs=62.3
Q ss_pred HHHHHhCCCCccccccCcChHHHHH---HHHhhcCHHHHHHHHHHHH-----------HHHHHHhhCcCchHHHHHHHcc
Q psy15035 178 EVLEMLAPLPLLPFVHSKAGASVAM---HIIWNATNKLKKKIVKELK-----------GHLREVATSEFGHLVLVTLLDN 243 (816)
Q Consensus 178 ~iie~l~~~~l~~L~~tk~Gs~Vv~---~cl~~~~~kdRk~Iik~lk-----------~~v~~La~d~~G~~Vlq~~l~~ 243 (816)
+|.+-+.+. ..+++...--.++++ +.+.+-+.++-..+++-+. ..+.+|+.-.-|--=+-+ |+.
T Consensus 131 fi~tKl~~l-~~e~L~kevE~~iv~eikkal~dVtgeef~lfm~~L~~lk~~~~k~~~a~lqeLa~~~e~~a~lda-f~~ 208 (460)
T KOG2213|consen 131 FIRTKLITL-KGEVLTKEVERHIVDEIKKALEDVTGEEFTLFMDILASLKSLQTKAGEARLQELAEEQEGLADLDA-FNV 208 (460)
T ss_pred HHHHHhhcc-cHHHhhhHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhcccCCCCHHHHHHHHHHHhhhhccCc-ccC
Confidence 344444444 444444333333333 2445556666555555443 235555554444433334 666
Q ss_pred CCchHHHHHHHHHHHHHhHHhHhcChhhHHHHHHhhccCCCCCcC
Q psy15035 244 VDDTLLLKKALLPELLAEVVPLANHEYGRKVIAHLVSWCDPGFFH 288 (816)
Q Consensus 244 ~DDt~l~~k~Iv~eL~~~l~~L~~d~yG~~Vl~~Ll~~~~~~~f~ 288 (816)
.|+... ..+++-+.-.++-.+....+.+.+.|+=..--|.+|.
T Consensus 209 sD~d~V--dRfisCl~~AvPfFargapSskf~~y~n~~~ip~~fd 251 (460)
T KOG2213|consen 209 SDADYV--DRFISCLLMAVPFFARGAPSSKFVEYLNKHIIPHHFD 251 (460)
T ss_pred CChHHH--HHHHHHHHHhhhhhhcCCchhHHHHHHHhhhcccccc
Confidence 776654 3488888889999999999999999987665555443
No 157
>PF02196 RBD: Raf-like Ras-binding domain; InterPro: IPR003116 This is the Ras-binding domain found in proteins related to Ras. It is found in association with the PE-bind and pkinase domains.; GO: 0005057 receptor signaling protein activity, 0007165 signal transduction; PDB: 1RFA_A 1C1Y_B 3KUD_B 1GUA_B 3KUC_B 2L05_A 3NY5_D 1RRB_A 1WFY_A 1WXM_A.
Probab=47.42 E-value=49 Score=28.22 Aligned_cols=53 Identities=21% Similarity=0.248 Sum_probs=38.1
Q ss_pred EEEEecCCceEEEEcCCCCcHHHHHHHHhhhhCCCCCCeEEEEC--CeecCCCcc
Q psy15035 607 INIKSNTGNTVCVNLDPASDIRNVKEMIAPKLGLKYEEVKIIFA--GKELEDTTI 659 (816)
Q Consensus 607 V~Vk~~~g~t~~v~V~~~~TV~~LK~~I~~~~Gip~~~qrLif~--Gk~L~d~~t 659 (816)
+.|-.++|+...+.|.|..||.|+-.++.++.|+.++...+... .+.|.-+..
T Consensus 3 ~~v~LP~~q~t~V~vrpg~ti~d~L~~~~~kr~L~~~~~~V~~~~~~k~l~~~~d 57 (71)
T PF02196_consen 3 CRVHLPNGQRTVVQVRPGMTIRDALSKACKKRGLNPECCDVRLVGEKKPLDWDQD 57 (71)
T ss_dssp EEEEETTTEEEEEEE-TTSBHHHHHHHHHHTTT--CCCEEEEEEEEEEEE-TTSB
T ss_pred EEEECCCCCEEEEEEcCCCCHHHHHHHHHHHcCCCHHHEEEEEcCCCccccCCCc
Confidence 35556789999999999999999999999999999987666433 344544443
No 158
>cd06408 PB1_NoxR The PB1 domain is present in the Epichloe festucae NoxR protein (NADPH oxidase regulator), a key regulator of NADPH oxidase isoform, NoxA. NoxA is essential for growth control of the fungal endophyte in plant tissue in the process of symbiotic interaction between a fungi and its plant host. The Epichloe festucae p67(phox)-like regulator, NoxR, dispensable in culture but essential in plants for the symbiotic interaction. Plants infected with a noxR deletion mutant show severe stunting and premature senescence, whereas hyphae in the meristematic tissues show increased branching leading to increased fungal colonization of pseudostem and leaf blade tissue. The PB1 domain is a modular domain mediating specific protein-protein interactions which a play role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is
Probab=47.11 E-value=88 Score=27.93 Aligned_cols=46 Identities=17% Similarity=0.430 Sum_probs=36.7
Q ss_pred eEEEEEecCCceEEEEcCCCCcHHHHHHHHhhhhCCCCCCeEEEECCe
Q psy15035 605 LMINIKSNTGNTVCVNLDPASDIRNVKEMIAPKLGLKYEEVKIIFAGK 652 (816)
Q Consensus 605 M~V~Vk~~~g~t~~v~V~~~~TV~~LK~~I~~~~Gip~~~qrLif~Gk 652 (816)
|+|.|.. +|.++.+.|+++.+-.+|..+|..+.|+. ..+.|-|..-
T Consensus 3 ikVKv~~-~~Dv~~i~v~~~i~f~dL~~kIrdkf~~~-~~~~iKykDE 48 (86)
T cd06408 3 IRVKVHA-QDDTRYIMIGPDTGFADFEDKIRDKFGFK-RRLKIKMKDD 48 (86)
T ss_pred EEEEEEe-cCcEEEEEcCCCCCHHHHHHHHHHHhCCC-CceEEEEEcC
Confidence 5555654 67899999999999999999999999995 4566656543
No 159
>PF05773 RWD: RWD domain; InterPro: IPR006575 The RWD eukaryotic domain is found in RING finger (IPR001841 from INTERPRO) and WD repeat (IPR001680 from INTERPRO) containing proteins and DEXDc-like helicase (IPR001410 from INTERPRO) subfamily related to the ubiquitin-conjugating enzymes domain (IPR000608 from INTERPRO). ; GO: 0005515 protein binding; PDB: 2EBM_A 2EBK_A 2DAX_A 2DAW_A 2DAY_A 2DMF_A 1UKX_A 2YZ0_A.
Probab=46.29 E-value=21 Score=32.36 Aligned_cols=62 Identities=11% Similarity=-0.085 Sum_probs=33.3
Q ss_pred HHHHHHHhhhcCCCCCcceeccccCCCCcccceEEEEeC--CCCCCCCCcchhhhhchhhhhhhhhhhh
Q psy15035 528 RLLEELEHGQRGVGDGTISWGLENDDDMTLTHWTGMIIG--PPRTSTTGHIMDTIIGYIMSVLNEILHL 594 (816)
Q Consensus 528 ~l~~el~~~~~~~~~~~~s~gl~~~~d~~l~~w~~~i~G--P~~t~~e~~~~~l~i~f~~~yp~~~p~~ 594 (816)
...+|++-++.=-++....+ ....-..+..++-+ ...+......+.+.+.||++||..+|.+
T Consensus 5 ~~~~EieaL~sIy~~~~~~~-----~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~p~~YP~~~P~i 68 (113)
T PF05773_consen 5 QQEEEIEALQSIYPDDFIEI-----ESKSPPSLEVKLDESSSSFESSSFPSVTLHFTLPPGYPESPPKI 68 (113)
T ss_dssp HHHHHHHHHHHHSSSSESSS-----TSSSSEEEEEEE--CEECCTTTTSEEEEEEEEE-SSTTSS--EE
T ss_pred HHHHHHHHHHHHcCCCcccc-----ccCCCCceeeeecccccccccccceeEEEEEeCCCcCCCcCCEE
Confidence 35678888874434442111 11122256666632 2334444567789999999999888765
No 160
>PF14732 UAE_UbL: Ubiquitin/SUMO-activating enzyme ubiquitin-like domain; PDB: 1Y8Q_B 1Y8R_E 3KYD_B 3KYC_B.
Probab=45.33 E-value=39 Score=30.07 Aligned_cols=54 Identities=24% Similarity=0.318 Sum_probs=31.1
Q ss_pred EEcC-CCCcHHHHHHHHhh-hhCCCCCCeEEEECCeec----------CCCccccccCCCCCCEEEEe
Q psy15035 619 VNLD-PASDIRNVKEMIAP-KLGLKYEEVKIIFAGKEL----------EDTTIISECDLGQQSILHAV 674 (816)
Q Consensus 619 v~V~-~~~TV~~LK~~I~~-~~Gip~~~qrLif~Gk~L----------~d~~tL~~~~I~~~stl~lv 674 (816)
|.++ ..+|+.+|-+.|-+ +.|+..-. +.++|+.| ..+++|+++||.+|+.+.+.
T Consensus 2 v~~d~~~~TL~~lv~~Vlk~~Lg~~~P~--v~~~~~ilyd~de~~~~~~l~k~L~elgi~~gs~L~v~ 67 (87)
T PF14732_consen 2 VKVDTKKMTLGDLVEKVLKKKLGMNEPD--VSVGGTILYDSDEEEYDDNLPKKLSELGIVNGSILTVD 67 (87)
T ss_dssp EEE-TTT-BHHHHHHHCCCCCS--SSEE--EEES-EEEE-SSSSSSTTCTTSBGGGGT--TT-EEEEE
T ss_pred EEEechhCcHHHHHHHHHHhccCCCCCE--EEeCCCEEEcCCcchhhhcccCChhHcCCCCCCEEEEE
Confidence 3344 46699999998755 66765422 23355444 23468999999999999887
No 161
>TIGR02958 sec_mycoba_snm4 secretion protein snm4. Members of this family are the 12-transmembrane domain protein snm4, where snm stands for secretion in mycocbacteria. This system acts on Mycobacterium tuberculosis related pair of virulence factors ESAT-6 and CFP-10 and on other homologs. The system is conserved in many Actinobacteria, including the non-pathogenic Mycobacterium smegmatis.
Probab=44.55 E-value=82 Score=36.80 Aligned_cols=68 Identities=13% Similarity=0.156 Sum_probs=54.6
Q ss_pred EEEEEecCCceEEEEcCCCCcHHHHHHHHhhhhCC----C--CCCeEEE-ECCeecCCCccccccCCCCCCEEEEe
Q psy15035 606 MINIKSNTGNTVCVNLDPASDIRNVKEMIAPKLGL----K--YEEVKII-FAGKELEDTTIISECDLGQQSILHAV 674 (816)
Q Consensus 606 ~V~Vk~~~g~t~~v~V~~~~TV~~LK~~I~~~~Gi----p--~~~qrLi-f~Gk~L~d~~tL~~~~I~~~stl~lv 674 (816)
.|+|...+ +.+.+-++.+..|+|+-..+-+..|- + +..-.|. -+|..|+.++||.+.||.||+++++.
T Consensus 4 RVtV~~~~-~~~DlaLPa~~PvaellP~ll~~~~~~~~~~~~~~~w~L~r~gG~pL~~~~sL~~~gV~DG~~L~L~ 78 (452)
T TIGR02958 4 RVTVLAGR-RAVDVALPADVPVAELIPDLVDLLDDRGAAELGAVRWALARAGGSPLDPDASLAEAGVRDGELLVLV 78 (452)
T ss_pred EEEEeeCC-eeeeeecCCCCcHHHHHHHHHHHhCcccccCCCCcceEEecCCCCCCCCCCCHHHcCCCCCCeEEEe
Confidence 57787754 45788899999999999999988764 1 2223343 57889999999999999999999999
No 162
>KOG2086|consensus
Probab=43.56 E-value=32 Score=38.70 Aligned_cols=68 Identities=18% Similarity=0.316 Sum_probs=53.7
Q ss_pred ceEEEEEecCCceEEEEcCCCCcHHHHHHHHhhhhCC-CCCCeEEE--ECCeecC-CCccccccCCCCCCEE
Q psy15035 604 TLMINIKSNTGNTVCVNLDPASDIRNVKEMIAPKLGL-KYEEVKII--FAGKELE-DTTIISECDLGQQSIL 671 (816)
Q Consensus 604 ~M~V~Vk~~~g~t~~v~V~~~~TV~~LK~~I~~~~Gi-p~~~qrLi--f~Gk~L~-d~~tL~~~~I~~~stl 671 (816)
+-.|.||..+|.-+...++...||.|++.-|.....- +...+-|+ |--|.|. ++.||++.||.+...|
T Consensus 305 tTsIQIRLanG~RlV~~fN~sHTv~DIR~fI~~aRp~~~~~~F~L~~~FPpk~l~D~sqTle~AgL~Nsvlv 376 (380)
T KOG2086|consen 305 TTSIQIRLANGTRLVLKFNHSHTVSDIREFIDTARPGDSSTYFILMMAFPPKPLSDDSQTLEEAGLLNSVLV 376 (380)
T ss_pred cceEEEEecCCceeeeeccCcccHHHHHHHHHhcCCCCcCCceeeeecCCCcccCCcchhHHhccchhhhhh
Confidence 4568889999998889999999999999999988754 44455554 5668886 5779999999876544
No 163
>cd05992 PB1 The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as a noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants.
Probab=41.48 E-value=69 Score=27.31 Aligned_cols=44 Identities=18% Similarity=0.318 Sum_probs=34.9
Q ss_pred EEEEecCCceEEEEcC-CCCcHHHHHHHHhhhhCCCCCCeEEEECC
Q psy15035 607 INIKSNTGNTVCVNLD-PASDIRNVKEMIAPKLGLKYEEVKIIFAG 651 (816)
Q Consensus 607 V~Vk~~~g~t~~v~V~-~~~TV~~LK~~I~~~~Gip~~~qrLif~G 651 (816)
|.++.. |....+.++ ...|..+|+.+|.++.+.+.....|-|..
T Consensus 3 vK~~~~-~~~~~~~~~~~~~s~~~L~~~i~~~~~~~~~~~~l~y~D 47 (81)
T cd05992 3 VKVKYG-GEIRRFVVVSRSISFEDLRSKIAEKFGLDAVSFKLKYPD 47 (81)
T ss_pred EEEEec-CCCEEEEEecCCCCHHHHHHHHHHHhCCCCCcEEEEeeC
Confidence 455553 567778888 89999999999999999987666776655
No 164
>PRK07696 sulfur carrier protein ThiS; Provisional
Probab=40.56 E-value=1.5e+02 Score=24.93 Aligned_cols=65 Identities=12% Similarity=0.134 Sum_probs=43.3
Q ss_pred eEEEEEecCCceEEEEcCCC-CcHHHHHHHHhhhhCCCCCCeEEEECCeecCCCccccccCCCCCCEEEEe-eCCCC
Q psy15035 605 LMINIKSNTGNTVCVNLDPA-SDIRNVKEMIAPKLGLKYEEVKIIFAGKELEDTTIISECDLGQQSILHAV-KSSPE 679 (816)
Q Consensus 605 M~V~Vk~~~g~t~~v~V~~~-~TV~~LK~~I~~~~Gip~~~qrLif~Gk~L~d~~tL~~~~I~~~stl~lv-r~~gg 679 (816)
|+|+| +|+.+ +++.. .||.+|-+. .|+++...-+-.+|..+..+ .-.++-|++|+.|.++ -..||
T Consensus 1 m~I~v---NG~~~--~~~~~~~tv~~lL~~----l~~~~~~vav~vN~~iv~r~-~w~~~~L~~gD~iEIv~~VgGG 67 (67)
T PRK07696 1 MNLKI---NGNQI--EVPESVKTVAELLTH----LELDNKIVVVERNKDILQKD-DHTDTSVFDGDQIEIVTFVGGG 67 (67)
T ss_pred CEEEE---CCEEE--EcCCCcccHHHHHHH----cCCCCCeEEEEECCEEeCHH-HcCceecCCCCEEEEEEEecCC
Confidence 44554 56654 55554 578887764 68888877788999887532 2334557889999999 44443
No 165
>COG2104 ThiS Sulfur transfer protein involved in thiamine biosynthesis [Coenzyme metabolism]
Probab=37.08 E-value=2.3e+02 Score=24.07 Aligned_cols=59 Identities=17% Similarity=0.272 Sum_probs=43.1
Q ss_pred CceEEEEcCCCCcHHHHHHHHhhhhCCCCCCeEEEECCeecCCCccccccCCCCCCEEEEee-CCCC
Q psy15035 614 GNTVCVNLDPASDIRNVKEMIAPKLGLKYEEVKIIFAGKELEDTTIISECDLGQQSILHAVK-SSPE 679 (816)
Q Consensus 614 g~t~~v~V~~~~TV~~LK~~I~~~~Gip~~~qrLif~Gk~L~d~~tL~~~~I~~~stl~lvr-~~gg 679 (816)
|+ +++++...|+++|-.. .|++++..-+..+|..+..+ --.+.-+++++.|.+++ ..||
T Consensus 9 g~--~~e~~~~~tv~dLL~~----l~~~~~~vav~vNg~iVpr~-~~~~~~l~~gD~ievv~~v~GG 68 (68)
T COG2104 9 GK--EVEIAEGTTVADLLAQ----LGLNPEGVAVAVNGEIVPRS-QWADTILKEGDRIEVVRVVGGG 68 (68)
T ss_pred CE--EEEcCCCCcHHHHHHH----hCCCCceEEEEECCEEccch-hhhhccccCCCEEEEEEeecCC
Confidence 55 4677777999999875 78999888889999887632 22355577789999883 4443
No 166
>PF14533 USP7_C2: Ubiquitin-specific protease C-terminal; PDB: 2YLM_A.
Probab=36.83 E-value=64 Score=33.62 Aligned_cols=112 Identities=21% Similarity=0.303 Sum_probs=52.6
Q ss_pred eeeecchhhhHHHHHHHhhhcCCCCCcceeccccCCCCcccceEE---EEeC--CCCCCCCCc--chhhhhc-hhhhhhh
Q psy15035 518 KVLLIVPRNFRLLEELEHGQRGVGDGTISWGLENDDDMTLTHWTG---MIIG--PPRTSTTGH--IMDTIIG-YIMSVLN 589 (816)
Q Consensus 518 ~~ll~vp~~~~l~~el~~~~~~~~~~~~s~gl~~~~d~~l~~w~~---~i~G--P~~t~~e~~--~~~l~i~-f~~~yp~ 589 (816)
.+-+-||++.-+.+=|+++++..+- .+.+...|+-|.+ .|.+ .++++-.+- ...+.++ .|.+...
T Consensus 35 ~~~~~vpk~~tV~Dll~~l~~k~~~-------~~~~~~~lrl~ev~~~ki~~~~~~d~~i~~l~~~~~~r~E~ip~ee~~ 107 (213)
T PF14533_consen 35 EYELLVPKTGTVSDLLEELQKKVGF-------SEEGTGKLRLWEVSNHKIYKILSEDEPISSLNDYITLRIEEIPEEELN 107 (213)
T ss_dssp EEEE--BTT-BHHHHHHHHHTT-----------TT----EEEEEEETTEEEEEE-TTSBGGGS--TTEEEEEE--GGGSS
T ss_pred EEEEEECCCCCHHHHHHHHHHHcCC-------CcCCcCcEEEEEeECCEEEeecCCCCchhhccCcceeeeecCChHHhh
Confidence 4556788887766666666644111 1233346667766 3332 233333211 0012232 4544422
Q ss_pred h--------hhhheeccCCCCCceEEEEEecCCceEEEEcCCCCcHHHHHHHHhhhhCCCCCC
Q psy15035 590 E--------ILHLFWISRKPDNTLMINIKSNTGNTVCVNLDPASDIRNVKEMIAPKLGLKYEE 644 (816)
Q Consensus 590 ~--------~p~~~~~~~~~~~~M~V~Vk~~~g~t~~v~V~~~~TV~~LK~~I~~~~Gip~~~ 644 (816)
. ...+|+|.+..+ ..-|-.|.+.|.+..|..++|+.|++++|++..+
T Consensus 108 ~~~~~~~~~li~V~hf~k~~~--------~~hGiPF~f~v~~gE~f~~tK~Rl~~rlgv~~ke 162 (213)
T PF14533_consen 108 LDDESEGEKLIPVFHFHKDPS--------RTHGIPFLFVVKPGETFSDTKERLQKRLGVSDKE 162 (213)
T ss_dssp --TT--TEEEEEEEEESSSTT---------EEEEEEEEEEETT--HHHHHHHHHHHH---HHH
T ss_pred cccccccceEEEEEEEecCcc--------ccCCCCEEEEeeCCCcHHHHHHHHHHHhCCChhh
Confidence 2 234444444322 1136678899999999999999999999998754
No 167
>cd01817 RGS12_RBD Ubiquitin domain of RGS12 and RGS14. RGS12 (regulator of G signalling 12), and RGS14, are members of a family of GTPase-activating proteins (GAP's) specific for the G-alpha subunit, which act as key inhibitors of G-protein-mediated cell responses in eukaryotes. Their domain architecture includes tandem RBD domains as well as PDZ , PTB, and RGS, and GoLoco domains.
Probab=35.97 E-value=1.6e+02 Score=25.55 Aligned_cols=42 Identities=26% Similarity=0.486 Sum_probs=37.5
Q ss_pred ecCCceEEEEcCCCCcHHHHHHHHhhhhCCCCCCeEEEECCe
Q psy15035 611 SNTGNTVCVNLDPASDIRNVKEMIAPKLGLKYEEVKIIFAGK 652 (816)
Q Consensus 611 ~~~g~t~~v~V~~~~TV~~LK~~I~~~~Gip~~~qrLif~Gk 652 (816)
.++|++..|.+.|..||.|+-.++.++.|++++.--++..|+
T Consensus 6 LPdg~~T~V~vrpG~ti~d~L~kllekRgl~~~~~~vf~~g~ 47 (73)
T cd01817 6 LPDGSTTVVPTRPGESIRDLLSGLCEKRGINYAAVDLFLVGG 47 (73)
T ss_pred CCCCCeEEEEecCCCCHHHHHHHHHHHcCCChhHEEEEEecC
Confidence 568888899999999999999999999999999888876664
No 168
>PF10790 DUF2604: Protein of Unknown function (DUF2604); InterPro: IPR019726 This entry represents bacterial proteins with undetermined function.
Probab=34.12 E-value=1.5e+02 Score=24.97 Aligned_cols=62 Identities=15% Similarity=0.173 Sum_probs=50.7
Q ss_pred CCceEEEEcCCCCcHHHHHHHHhhhh---CCCCCCeEEE-ECCeecCCCccccccCCCCCCEEEEe
Q psy15035 613 TGNTVCVNLDPASDIRNVKEMIAPKL---GLKYEEVKII-FAGKELEDTTIISECDLGQQSILHAV 674 (816)
Q Consensus 613 ~g~t~~v~V~~~~TV~~LK~~I~~~~---Gip~~~qrLi-f~Gk~L~d~~tL~~~~I~~~stl~lv 674 (816)
+|+...++.+++...--+.++.-+.+ |-|++.-.|- -+|..|+-++.+.|||+.++-++.+.
T Consensus 4 NGqPv~VEANvnaPLh~v~akALe~sgNvgQP~ENWElkDe~G~vlD~~kKveD~GftngvkLFLs 69 (76)
T PF10790_consen 4 NGQPVQVEANVNAPLHPVRAKALEQSGNVGQPPENWELKDESGQVLDVNKKVEDFGFTNGVKLFLS 69 (76)
T ss_pred CCCceeeecCCCCcchHHHHHHHhhccccCCCcccceeeccCCcEeeccchhhhccccccceEEEE
Confidence 57888899888888777777666665 5788876664 47888899999999999999999887
No 169
>PRK11840 bifunctional sulfur carrier protein/thiazole synthase protein; Provisional
Probab=33.88 E-value=1.9e+02 Score=32.26 Aligned_cols=67 Identities=15% Similarity=0.149 Sum_probs=48.7
Q ss_pred eEEEEEecCCceEEEEcCCCCcHHHHHHHHhhhhCCCCCCeEEEECCeecCCCccccccCCCCCCEEEEe-eCCCCCC
Q psy15035 605 LMINIKSNTGNTVCVNLDPASDIRNVKEMIAPKLGLKYEEVKIIFAGKELEDTTIISECDLGQQSILHAV-KSSPENN 681 (816)
Q Consensus 605 M~V~Vk~~~g~t~~v~V~~~~TV~~LK~~I~~~~Gip~~~qrLif~Gk~L~d~~tL~~~~I~~~stl~lv-r~~gg~~ 681 (816)
|+|+| +|+. +++....||.+|-+. .+++++..-+..+|+.+. ...-.++-|++|+.|.++ ...||..
T Consensus 1 M~I~V---NGk~--~el~e~~TL~dLL~~----L~i~~~~VAVeVNgeIVp-r~~w~~t~LkeGD~IEII~~VgGGs~ 68 (326)
T PRK11840 1 MRIRL---NGEP--RQVPAGLTIAALLAE----LGLAPKKVAVERNLEIVP-RSEYGQVALEEGDELEIVHFVGGGSD 68 (326)
T ss_pred CEEEE---CCEE--EecCCCCcHHHHHHH----cCCCCCeEEEEECCEECC-HHHcCccccCCCCEEEEEEEecCCCC
Confidence 44554 4664 566777899888765 689999989999999885 223345668899999999 6666633
No 170
>COG2051 RPS27A Ribosomal protein S27E [Translation, ribosomal structure and biogenesis]
Probab=33.79 E-value=28 Score=29.35 Aligned_cols=21 Identities=29% Similarity=0.740 Sum_probs=17.0
Q ss_pred ccccceeccCcCCCceeEecC
Q psy15035 723 AHFYLRVRCAQCKSGAVIVDR 743 (816)
Q Consensus 723 ~~f~lRv~C~~C~~~~~t~~~ 743 (816)
.+|||||+|..|..-.+..++
T Consensus 14 ~s~Fl~VkCpdC~N~q~vFsh 34 (67)
T COG2051 14 RSRFLRVKCPDCGNEQVVFSH 34 (67)
T ss_pred CceEEEEECCCCCCEEEEecc
Confidence 689999999999987774443
No 171
>PF08783 DWNN: DWNN domain; InterPro: IPR014891 The ~75-residue DWNN (Domain With No Name) domain is highly conserved through eukaryotic species but is absent in prokaryotes. The DWNN domain is found only at the N terminus of the RBBP6 family of proteins which includes: Mammalian RBBP6, a splicing-associated protein that plays a role in the induction of apoptosis and regulation of the cell cycle. Drosophila melanogaster (Fruit fly) SNAMA (something that sticks like glue), a protein that appears to play a role in apoptosis. All of the identified RBBP6 homologues include the DWNN domain, a CCHC-type zinc finger (see PDOC50158 from PROSITEDOC) and a RING-type zinc finger (see PDOC00449 from PROSITEDOC). The three domain form is found in plants, protozoa, fungi and microsporidia. The RBBP6 homologues in vertebrates, insects and worms are longer and include additional domains. In addition to forming part of the full-length RBBP6 protein, the DWNN domain is also expressed in vertebrates as a small protein containing a DWNN domain and a short C-terminal tail (RBBP6 variant 3). The DWNN domain adopts a fold similar to the ubiquitin one, characterised by two alpha-helices and four beta-sheets ordered as beta-beta-alpha-beta-alpha-beta along the sequence. The similarity of DWNN domain to ubiquitin and the presence of the RING finger suggest that the DWNN domain may act as an ubiquitin-like modifier, possibly playing a role in the regulation of the splicing machinery [, ]. ; GO: 0008270 zinc ion binding, 0005634 nucleus; PDB: 2C7H_A.
Probab=33.51 E-value=71 Score=27.69 Aligned_cols=33 Identities=18% Similarity=0.205 Sum_probs=20.5
Q ss_pred EEEecCCc-eEEEEcC-CCCcHHHHHHHHhhhhCC
Q psy15035 608 NIKSNTGN-TVCVNLD-PASDIRNVKEMIAPKLGL 640 (816)
Q Consensus 608 ~Vk~~~g~-t~~v~V~-~~~TV~~LK~~I~~~~Gi 640 (816)
+-|+.+.+ ...|.++ ..-||.+||..|..+.++
T Consensus 2 ~YKFkS~k~~~~i~fdG~~Isv~dLKr~I~~~~~l 36 (74)
T PF08783_consen 2 HYKFKSQKDYDTITFDGTSISVFDLKREIIEKKKL 36 (74)
T ss_dssp EEEETT-SSEEEEEESSSEEEHHHHHHHHHHHHT-
T ss_pred eEEecccCCccEEEECCCeeEHHHHHHHHHHHhCC
Confidence 34444333 2346666 356999999999777655
No 172
>PRK01777 hypothetical protein; Validated
Probab=33.26 E-value=2.7e+02 Score=25.28 Aligned_cols=63 Identities=8% Similarity=0.061 Sum_probs=43.2
Q ss_pred ceEEEEEec--C-CceEEEEcCCCCcHHHHHHHHhhhhCCCCC--Ce-----EEEECCeecCCCccccccCCCCCCEEEE
Q psy15035 604 TLMINIKSN--T-GNTVCVNLDPASDIRNVKEMIAPKLGLKYE--EV-----KIIFAGKELEDTTIISECDLGQQSILHA 673 (816)
Q Consensus 604 ~M~V~Vk~~--~-g~t~~v~V~~~~TV~~LK~~I~~~~Gip~~--~q-----rLif~Gk~L~d~~tL~~~~I~~~stl~l 673 (816)
.|+|.|=.. + .....++++...||.++-.. .||+.+ +. .+.-+|+.... +.-+++|++|-+
T Consensus 3 ~i~v~V~ya~~~~~~~~~l~vp~GtTv~dal~~----sgi~~~~pei~~~~~~vgI~Gk~v~~-----d~~L~dGDRVeI 73 (95)
T PRK01777 3 KIRVEVVYALPERQYLQRLTLQEGATVEEAIRA----SGLLELRTDIDLAKNKVGIYSRPAKL-----TDVLRDGDRVEI 73 (95)
T ss_pred eeEEEEEEECCCceEEEEEEcCCCCcHHHHHHH----cCCCccCcccccccceEEEeCeECCC-----CCcCCCCCEEEE
Confidence 566766543 2 23467899999999998766 477665 33 55567776655 445677999999
Q ss_pred ee
Q psy15035 674 VK 675 (816)
Q Consensus 674 vr 675 (816)
.|
T Consensus 74 yr 75 (95)
T PRK01777 74 YR 75 (95)
T ss_pred ec
Confidence 94
No 173
>PF08337 Plexin_cytopl: Plexin cytoplasmic RasGAP domain; InterPro: IPR013548 This domain is found at C terminus of various plexins (e.g. P51805 from SWISSPROT). Plexins are receptors for semaphorins, and plexin signalling is important in pathfinding and patterning of both neurons and developing blood vessels [, ]. The cytoplasmic region, which has been called a SEX domain [], and is involved in downstream signalling pathways, by interaction with proteins such as Rac1, RhoD, Rnd1 and other plexins []. ; PDB: 3H6N_A 4E71_A 4E74_A 3IG3_A 2REX_C 2JPH_A 2R2O_A 3HM6_X 3SU8_X 3SUA_E ....
Probab=32.72 E-value=47 Score=39.43 Aligned_cols=73 Identities=21% Similarity=0.332 Sum_probs=47.1
Q ss_pred ceEEEEEec--CCceEEEEcCCCCcHHHHHHHHhhhh--CCC------CCCeEEEE--C--Ce-ecCCC-----------
Q psy15035 604 TLMINIKSN--TGNTVCVNLDPASDIRNVKEMIAPKL--GLK------YEEVKIIF--A--GK-ELEDT----------- 657 (816)
Q Consensus 604 ~M~V~Vk~~--~g~t~~v~V~~~~TV~~LK~~I~~~~--Gip------~~~qrLif--~--Gk-~L~d~----------- 657 (816)
+|.++|-.. .+..++|.|-.-|||.++|++|-... +.| +++.-|-+ + |+ .|+|.
T Consensus 189 ~ltl~v~~~~~~~~~i~VkVLdCDTItQVKeKiLDavyk~~p~S~rp~~~d~dLEwr~~~~~~~iL~D~D~ts~~~~~wk 268 (539)
T PF08337_consen 189 TLTLNVVPQEEGSEEIPVKVLDCDTITQVKEKILDAVYKNTPYSQRPRADDVDLEWRQGRGGRLILQDEDSTSKVEGGWK 268 (539)
T ss_dssp EEEEEEECTTTSSTCEEEEEETTSBHHHHHHHHHHHHTTTS-GGGS--GGGEEEEEEETTSEEEEESSSSTTSEEETTEE
T ss_pred EEEEEEEecCCCCceEEEEEEecCcccHHHHHHHHHHHcCCCCCCCCCccccceeeecCCCCcccccCCCCCcccCCCce
Confidence 345554333 23458899999999999999998774 333 34455533 2 23 45443
Q ss_pred --ccccccCCCCCCEEEEe-eC
Q psy15035 658 --TIISECDLGQQSILHAV-KS 676 (816)
Q Consensus 658 --~tL~~~~I~~~stl~lv-r~ 676 (816)
.||+.|+|.+|++|-|+ +.
T Consensus 269 rLNTL~HY~V~dga~vaLv~k~ 290 (539)
T PF08337_consen 269 RLNTLAHYKVPDGATVALVPKQ 290 (539)
T ss_dssp E--BHHHHT--TTEEEEEEES-
T ss_pred EeccHhhcCCCCCceEEEeecc
Confidence 37999999999999999 43
No 174
>KOG2689|consensus
Probab=32.52 E-value=97 Score=33.40 Aligned_cols=72 Identities=14% Similarity=0.199 Sum_probs=57.1
Q ss_pred CceEEEEEecCCceEEEEcCCCCcHHHHHHHHhhhhCCCCCCeEEE--ECCeecC---CCccccccCCCCCCEEEEe
Q psy15035 603 NTLMINIKSNTGNTVCVNLDPASDIRNVKEMIAPKLGLKYEEVKII--FAGKELE---DTTIISECDLGQQSILHAV 674 (816)
Q Consensus 603 ~~M~V~Vk~~~g~t~~v~V~~~~TV~~LK~~I~~~~Gip~~~qrLi--f~Gk~L~---d~~tL~~~~I~~~stl~lv 674 (816)
+.-.+.||..+|+|+..+.++..|...++.-|.-..|...+-..+. |--+.+. -..+|..+++.+.+++.+-
T Consensus 209 s~crlQiRl~DG~Tl~~tF~a~E~L~~VR~wVd~n~~~~~~P~~f~t~fPR~tf~edD~~KpLq~L~L~Psa~lil~ 285 (290)
T KOG2689|consen 209 SQCRLQIRLPDGQTLTQTFNARETLAAVRLWVDLNRGDGLDPYSFHTGFPRVTFTEDDELKPLQELDLVPSAVLILE 285 (290)
T ss_pred cceEEEEEcCCCCeeeeecCchhhHHHHHHHHHHhccCCCCCeeeecCCCceecccccccccHHHhccccchheecc
Confidence 3456789999999999999999999999999999998766544443 4444453 3568999999999888765
No 175
>PF11069 DUF2870: Protein of unknown function (DUF2870); InterPro: IPR021298 This is a eukaryotic family of proteins with unknown function.
Probab=32.44 E-value=56 Score=29.76 Aligned_cols=22 Identities=32% Similarity=0.652 Sum_probs=18.9
Q ss_pred EEEECCeecCCCccccccCCCCC
Q psy15035 646 KIIFAGKELEDTTIISECDLGQQ 668 (816)
Q Consensus 646 rLif~Gk~L~d~~tL~~~~I~~~ 668 (816)
.|.|+||+|..+.+|++| |+.+
T Consensus 3 ~LW~aGK~l~~~k~l~dy-~GkN 24 (98)
T PF11069_consen 3 QLWWAGKELQRGKKLSDY-IGKN 24 (98)
T ss_pred eEEeccccccCCCcHHHh-cCCC
Confidence 588999999999999999 5443
No 176
>PF02017 CIDE-N: CIDE-N domain; InterPro: IPR003508 This domain consists of caspase-activated (CAD) nucleases, which induce DNA fragmentation and chromatin condensation during apoptosis, and the cell death activator proteins CIDE-A and CIDE-B, which are inhibitors of CAD nuclease. The two proteins interact through the region defined by the method signatures.; GO: 0006915 apoptosis, 0005622 intracellular; PDB: 1IBX_A 2EEL_A 1F2R_I 1C9F_A 1D4B_A.
Probab=32.42 E-value=90 Score=27.35 Aligned_cols=48 Identities=25% Similarity=0.439 Sum_probs=35.7
Q ss_pred CcHHHHHHHHhhhhCCCCCCeEEEE--CCeecCCCccccccCCCCCCEEEEe
Q psy15035 625 SDIRNVKEMIAPKLGLKYEEVKIIF--AGKELEDTTIISECDLGQQSILHAV 674 (816)
Q Consensus 625 ~TV~~LK~~I~~~~Gip~~~qrLif--~Gk~L~d~~tL~~~~I~~~stl~lv 674 (816)
.|.++|+.+...+.+++.+..+|+. .|.+.+|+.=+.. +.+++.+++.
T Consensus 21 ~sL~eL~~K~~~~l~~~~~~~~lvL~eDGT~VddEeyF~t--Lp~nT~lm~L 70 (78)
T PF02017_consen 21 SSLEELLEKACDKLQLPEEPVRLVLEEDGTEVDDEEYFQT--LPDNTVLMLL 70 (78)
T ss_dssp SSHHHHHHHHHHHHT-SSSTCEEEETTTTCBESSCHHHCC--SSSSEEEEEE
T ss_pred CCHHHHHHHHHHHhCCCCcCcEEEEeCCCcEEccHHHHhh--CCCCCEEEEE
Confidence 5899999999999999987888865 6777776554443 5667777666
No 177
>PF04286 DUF445: Protein of unknown function (DUF445); InterPro: IPR007383 This entry contains proteins of unknown function. They are predicted to be transmembrane proteins with 2 or 3 TM domains.
Probab=31.72 E-value=6.4e+02 Score=27.73 Aligned_cols=51 Identities=22% Similarity=0.401 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhC---cCchHHHHHHHccCCchHHHHHHHHHHHHHhH
Q psy15035 210 NKLKKKIVKELKGHLREVATS---EFGHLVLVTLLDNVDDTLLLKKALLPELLAEV 262 (816)
Q Consensus 210 ~kdRk~Iik~lk~~v~~La~d---~~G~~Vlq~~l~~~DDt~l~~k~Iv~eL~~~l 262 (816)
++-+..|.+.+...+..+... ..|..| ..-++..|+..+ .+.|...+...+
T Consensus 289 ~~l~~~i~~~i~~~l~~~v~~~~~~i~~~V-~~~l~~~~~~~l-~~~i~~~v~~dL 342 (367)
T PF04286_consen 289 PELREKINRFIENLLERIVESNHIDIGEIV-EEKLNSLDDEEL-EELIESKVGKDL 342 (367)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHCCCHHHH-HHHHHHHHHHHh
Confidence 566666777777666666655 233333 333345554443 333443333333
No 178
>smart00144 PI3K_rbd PI3-kinase family, Ras-binding domain. Certain members of the PI3K family possess Ras-binding domains in their N-termini. These regions show some similarity (although not highly significant similarity) to Ras-binding RA domains (unpublished observation).
Probab=31.23 E-value=2e+02 Score=26.51 Aligned_cols=74 Identities=15% Similarity=0.157 Sum_probs=49.9
Q ss_pred CCCceEEEEEecC-CceEEEEcCCCCcHHHHHHHHhhh------hCCCCC-CeEEEECCee--cCCCccccccC-----C
Q psy15035 601 PDNTLMINIKSNT-GNTVCVNLDPASDIRNVKEMIAPK------LGLKYE-EVKIIFAGKE--LEDTTIISECD-----L 665 (816)
Q Consensus 601 ~~~~M~V~Vk~~~-g~t~~v~V~~~~TV~~LK~~I~~~------~Gip~~-~qrLif~Gk~--L~d~~tL~~~~-----I 665 (816)
..+.+.|.|...+ ..++++.+++++|+.+|.+.+-.+ ..-+++ +..|--.|+. |..+..|.+|. +
T Consensus 14 ~~~~i~v~i~~~~~~~~~t~~v~~~~~p~~li~~~l~k~~~~~~~~~~~~~dyvLkV~G~~Eyl~~~~~L~~~~yIr~cl 93 (108)
T smart00144 14 IANKILIVVHLEKDQQTKTLKVNPNCTPDSVLAQAFTKMLSLHDQVDPTSEDYILKVCGRDEYLLGDHPLGSFEYIRNCL 93 (108)
T ss_pred cCCeEEEEEEEccCceeEEEEECCCCCHHHHHHHHHHHHHhccccccCCCCcEEEEecCcEEEEeCCeeeechHHHHHHH
Confidence 3445666666543 467999999999999999887776 122333 5556555654 56777777776 5
Q ss_pred CCCCEEEEe
Q psy15035 666 GQQSILHAV 674 (816)
Q Consensus 666 ~~~stl~lv 674 (816)
..|..+||+
T Consensus 94 ~~~~~~~L~ 102 (108)
T smart00144 94 KNGREPHLV 102 (108)
T ss_pred hcCCCceEE
Confidence 557777776
No 179
>COG1536 FliG Flagellar motor switch protein [Cell motility and secretion]
Probab=31.22 E-value=8e+02 Score=27.60 Aligned_cols=163 Identities=13% Similarity=0.159 Sum_probs=79.2
Q ss_pred HhcCCHHHHHHHHHHHhHHHHHHhh-CcCchHHHHHHHHhcCCHHHHHHHHHHHhcCcc-----eeeccCCcchhHHhhc
Q psy15035 54 LKSGDENTKNEIIKALQPHVVTLLS-HTTASPVLMYAHDQVASPAQKLAMRQELYGGLY-----ESTGDKKINCLGDIFE 127 (816)
Q Consensus 54 L~~gs~eqr~~Ii~e~~g~v~~L~~-h~~G~~VVqk~~~~~at~eQr~~Li~e~yg~~~-----~l~kd~~~~~l~~ile 127 (816)
++..++++...++.+|..-+.+-.. ..-|..-.+.+++..-..+.-..++..+++... ...+......|.++|.
T Consensus 51 lk~v~~~~~~~il~eF~~~~~~~~~i~~~~~~~~~~lL~kalg~~~a~~i~~~i~~~~~~~~~~~~l~~~~p~~l~~~i~ 130 (339)
T COG1536 51 LKTVSPEEKEQVLEEFEELFTEQAGINKGADEYARELLEKALGEEKAESLLERITGSAIQTSPFDLLRKLDPSQLADLIK 130 (339)
T ss_pred ccCCCHHHHHHHHHHHHHHHHhccccccChHHHHHHHHHHhCcHhHHHHHHHHhhhccccccHHHHhhhCCHHHHHHHHH
Confidence 4566788888888888776655552 222222233333212233444456666766422 2222223444666666
Q ss_pred C-ChhHHHHHHHHHHHHHHHhh----hhhcccCCcchhhhHHHhhhcCCChhhHHHHHHHhCCCCcccc----ccCcChH
Q psy15035 128 Q-SPEMKTAILSVTKKTILKSL----QKTQVTGSALLHAVLLDFISHSSDSPDLMEVLEMLAPLPLLPF----VHSKAGA 198 (816)
Q Consensus 128 ~-~pekk~~Il~~l~~~l~~lv----~K~~~~~~~ivh~vl~ey~~~~~~~~~~~~iie~l~~~~l~~L----~~tk~Gs 198 (816)
+ +|.....|+.++......-+ .+ ...+.++-++. -+...++ +...++-..+... +..+ .....|.
T Consensus 131 ~EhPQtia~iLs~L~~~~aa~vL~~l~~--e~r~~v~~Ria--~l~~v~p-~al~~i~~~l~~~-l~~~~~~~~~~~gg~ 204 (339)
T COG1536 131 NEHPQTIALILSYLPPDQAAEILSTLPE--ELRADVVKRIA--TLEGVSP-EALAELENVLEKK-LQSLVNEDYSKLGGI 204 (339)
T ss_pred ccccHHHHHHHHhcCHHHHHHHHHhCCH--HHHHHHHHHHH--hhccCCH-HHHHHHHHHHHHH-HHhhccccccccccH
Confidence 6 66666666666655432111 11 11111222211 1112233 3333333333333 2222 2345566
Q ss_pred HHHHHHHhhcCHHHHHHHHHHHHH
Q psy15035 199 SVAMHIIWNATNKLKKKIVKELKG 222 (816)
Q Consensus 199 ~Vv~~cl~~~~~kdRk~Iik~lk~ 222 (816)
.++-..+.+-.-...+.|+..+..
T Consensus 205 ~~~aeIlN~~d~~~e~~il~~l~~ 228 (339)
T COG1536 205 KAAAEILNLLDRGTEKTILESLEE 228 (339)
T ss_pred hHHHHHHHhcchhHHHHHHHHHhh
Confidence 777777777776667777666653
No 180
>PF00794 PI3K_rbd: PI3-kinase family, ras-binding domain; InterPro: IPR000341 Phosphatidylinositol 3-kinase (PI3K) (2.7.1.137 from EC) is an enzyme that phosphorylates phosphoinositides on the 3-hydroxyl group of the inositol ring. A subset of PI3Ks has the capacity to bind and be activated by the GTP-bound small GTPase p21Ras (Ras). PI3Ks are recognised as one of the principal effectors of Ras signalling to the cell-cycle control machinery. In the structure of the Ras-PI3K gamma complex, contacts between the two molecules are made primarily via the so-called switch I region of Ras and the PI3K RBD. The RBD fold comprises a five-stranded mixed beta-sheet, flanked by two alpha-helices. Interaction between Ras and the PI3K RBD is primarily polar in character and, as characterised by kinetic measurements, is reversible and transient [].; GO: 0016303 1-phosphatidylinositol-3-kinase activity, 0005942 phosphatidylinositol 3-kinase complex; PDB: 2RD0_A 3HIZ_A 3HHM_A 1E8W_A 1E8X_A 1E7V_A 1E90_A 1E7U_A 2Y3A_A 3L54_A ....
Probab=30.67 E-value=1.8e+02 Score=26.50 Aligned_cols=74 Identities=18% Similarity=0.243 Sum_probs=46.7
Q ss_pred CCCceEEEEEec-CCceEEEEcCCCCcHHHHHHHHhhh--hCCCCC----CeEEEECCee--cCCCccccccC-----CC
Q psy15035 601 PDNTLMINIKSN-TGNTVCVNLDPASDIRNVKEMIAPK--LGLKYE----EVKIIFAGKE--LEDTTIISECD-----LG 666 (816)
Q Consensus 601 ~~~~M~V~Vk~~-~g~t~~v~V~~~~TV~~LK~~I~~~--~Gip~~----~qrLif~Gk~--L~d~~tL~~~~-----I~ 666 (816)
.++.+.|.|... .+.++++.++.+.|+.+|...+-.+ .+..+. +..|--.|+. |..+.+|.+|. +.
T Consensus 13 ~~~~i~v~v~~~~~~~~~t~~~~~~~t~~~li~~~l~k~~~~~~~~~~~~dyvLKV~G~~EyL~g~~~L~~y~yIr~cl~ 92 (106)
T PF00794_consen 13 QNNKIKVSVHFENSQQSFTFQVDPNSTPEELIAQALKKKLKDLLPPDPEDDYVLKVCGREEYLLGDHPLSQYEYIRQCLK 92 (106)
T ss_dssp SSSEEEEEEEETTCSEEEEEEEETTS-HHHHHHHHHHHHHHHTT-CHHHHGEEEEETTSSEEE-SSS-GGGBHHHHHHHH
T ss_pred CCCeEEEEEEEcCCCcEEEEEECCCCCHHHHHHHHHHHHHhhcCCcccccCEEEEecCceEEeeCCeeeeccHHHHHHHh
Confidence 455678888887 5567999999999999999888877 222221 4555455544 56777888776 34
Q ss_pred CCCEEEEe
Q psy15035 667 QQSILHAV 674 (816)
Q Consensus 667 ~~stl~lv 674 (816)
.+-.++|+
T Consensus 93 ~~~~~~L~ 100 (106)
T PF00794_consen 93 RGKDPHLV 100 (106)
T ss_dssp CT--EEEE
T ss_pred cCCCcEEE
Confidence 45555554
No 181
>cd01777 SNX27_RA Ubiquitin domain of SNX27 (sorting nexin protein 27). SNX27_RA SNX27 (sorting nexin protein 27) belongs to a large family of endosome-localized proteins related to sorting nexin1 which is implicated in regulating membrane traffic. The domain architecture of SNX27 includes an amino-terminal PDZ domain, a PX (PhoX homologous) domain, and a carboxy-terminal RA (RAS-associated) domain.
Probab=30.34 E-value=77 Score=28.34 Aligned_cols=41 Identities=17% Similarity=0.188 Sum_probs=35.6
Q ss_pred EEEEEecCCceEEEEcCCCCcHHHHHHHHhhhhCCCCCCeE
Q psy15035 606 MINIKSNTGNTVCVNLDPASDIRNVKEMIAPKLGLKYEEVK 646 (816)
Q Consensus 606 ~V~Vk~~~g~t~~v~V~~~~TV~~LK~~I~~~~Gip~~~qr 646 (816)
++-|-.++|.++.|++..+++..++=+.+..+.|+|.+-..
T Consensus 3 ~L~V~Lpdg~~i~V~v~~s~~a~~Vleav~~kl~L~~e~~~ 43 (87)
T cd01777 3 ELRIALPDKATVTVRVRKNATTDQVYQALVAKAGMDSYTQN 43 (87)
T ss_pred EEEEEccCCCEEEEEEEEcccHHHHHHHHHHHhCCCHHHHh
Confidence 34555678999999999999999999999999999998654
No 182
>cd06396 PB1_NBR1 The PB1 domain is an essential part of NBR1 protein, next to BRCA1, a scaffold protein mediating specific protein-protein interaction with both titin protein kinase and with another scaffold protein p62. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. The NBR1 protein contains a type I PB1 domain.
Probab=29.64 E-value=1.2e+02 Score=26.73 Aligned_cols=35 Identities=14% Similarity=0.305 Sum_probs=28.9
Q ss_pred EEEEecCCceEEEEcCC--CCcHHHHHHHHhhhhCCCC
Q psy15035 607 INIKSNTGNTVCVNLDP--ASDIRNVKEMIAPKLGLKY 642 (816)
Q Consensus 607 V~Vk~~~g~t~~v~V~~--~~TV~~LK~~I~~~~Gip~ 642 (816)
|.+.. +|.+..+.+++ +.|.++|++.|+...++++
T Consensus 3 vKaty-~~d~~rf~~~~~~~~~~~~L~~ev~~rf~l~~ 39 (81)
T cd06396 3 LKVTY-NGESQSFLVSDSENTTWASVEAMVKVSFGLND 39 (81)
T ss_pred EEEEE-CCeEEEEEecCCCCCCHHHHHHHHHHHhCCCc
Confidence 44444 57788888888 7799999999999999993
No 183
>PRK00415 rps27e 30S ribosomal protein S27e; Reviewed
Probab=27.52 E-value=47 Score=27.45 Aligned_cols=22 Identities=23% Similarity=0.667 Sum_probs=17.8
Q ss_pred CccccceeccCcCCCceeEecC
Q psy15035 722 KAHFYLRVRCAQCKSGAVIVDR 743 (816)
Q Consensus 722 ~~~f~lRv~C~~C~~~~~t~~~ 743 (816)
-+|||++|+|..|..-.+..+.
T Consensus 5 p~S~F~~VkCp~C~n~q~vFsh 26 (59)
T PRK00415 5 PRSRFLKVKCPDCGNEQVVFSH 26 (59)
T ss_pred CCCeEEEEECCCCCCeEEEEec
Confidence 3789999999999987765544
No 184
>PF14533 USP7_C2: Ubiquitin-specific protease C-terminal; PDB: 2YLM_A.
Probab=26.74 E-value=1.7e+02 Score=30.53 Aligned_cols=58 Identities=16% Similarity=0.206 Sum_probs=34.3
Q ss_pred ceEEEEcCCCCcHHHHHHHHhhhhCCCCC---CeEE--EECCee---cCCCccccccCCCCCCEEEEe
Q psy15035 615 NTVCVNLDPASDIRNVKEMIAPKLGLKYE---EVKI--IFAGKE---LEDTTIISECDLGQQSILHAV 674 (816)
Q Consensus 615 ~t~~v~V~~~~TV~~LK~~I~~~~Gip~~---~qrL--if~Gk~---L~d~~tL~~~~I~~~stl~lv 674 (816)
+.+.+-|+.+.||.||...++.+.+++.+ .+|| +++||. +..+.++.+. .+..++.+-
T Consensus 34 ~~~~~~vpk~~tV~Dll~~l~~k~~~~~~~~~~lrl~ev~~~ki~~~~~~d~~i~~l--~~~~~~r~E 99 (213)
T PF14533_consen 34 QEYELLVPKTGTVSDLLEELQKKVGFSEEGTGKLRLWEVSNHKIYKILSEDEPISSL--NDYITLRIE 99 (213)
T ss_dssp -EEEE--BTT-BHHHHHHHHHTT----TT----EEEEEEETTEEEEEE-TTSBGGGS----TTEEEEE
T ss_pred eEEEEEECCCCCHHHHHHHHHHHcCCCcCCcCcEEEEEeECCEEEeecCCCCchhhc--cCcceeeee
Confidence 35788899999999999999999999776 5555 367765 4677778776 444444443
No 185
>cd01818 TIAM1_RBD Ubiquitin domain of Tiam1 guanine nucleotide exchange factor. Tiam1 (T lymphoma invasion and metastasis 1) a guanine nucleotide exchange factor that activates Rac, is an important regulator of Rho GTPase functions in tumor cells including regulation of cell shape and invasiveness in epithelial cells and fibroblasts. TIAM1 has an RBD (Ras-binding domain) similar to that of Raf kinase as well as PH (pleckstrin homology), PDZ, and RhoGEF domains.
Probab=26.48 E-value=1.2e+02 Score=26.42 Aligned_cols=40 Identities=15% Similarity=0.107 Sum_probs=35.5
Q ss_pred EEEecCCceEEEEcCCCCcHHHHHHHHhhhhCCCCCCeEE
Q psy15035 608 NIKSNTGNTVCVNLDPASDIRNVKEMIAPKLGLKYEEVKI 647 (816)
Q Consensus 608 ~Vk~~~g~t~~v~V~~~~TV~~LK~~I~~~~Gip~~~qrL 647 (816)
.|-..+|+...+.|.|.+|+.|+-+.+.++-|+.|..-.|
T Consensus 3 ~V~lPn~~~~~v~vrp~~tv~dvLe~aCk~~~ldp~eh~L 42 (77)
T cd01818 3 WVCLPDNQPVLTYLRPGMSVEDFLESACKRKQLDPMEHYL 42 (77)
T ss_pred EEECCCCceEEEEECCCCCHHHHHHHHHHhcCCChhHhee
Confidence 4556789999999999999999999999999999887655
No 186
>PF01667 Ribosomal_S27e: Ribosomal protein S27; InterPro: IPR000592 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. A number of eukaryotic and archaeal ribosomal proteins can be grouped on the basis of sequence similarities. One of these families include mammalian, yeast, Chlamydomonas reinhardtii and Entamoeba histolytica S27, and Methanocaldococcus jannaschii (Methanococcus jannaschii) MJ0250 []. These proteins have from 62 to 87 amino acids. They contain, in their central section, a putative zinc-finger region of the type C-x(2)-C-x(14)-C-x(2)-C.; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 1QXF_A 3IZ6_X 2XZN_6 2XZM_6 3U5G_b 3IZB_X 3U5C_b.
Probab=25.90 E-value=44 Score=27.27 Aligned_cols=21 Identities=14% Similarity=0.619 Sum_probs=13.8
Q ss_pred ccccceeccCcCCCceeEecC
Q psy15035 723 AHFYLRVRCAQCKSGAVIVDR 743 (816)
Q Consensus 723 ~~f~lRv~C~~C~~~~~t~~~ 743 (816)
+|+|++|+|..|..-....++
T Consensus 2 ~S~Fm~VkCp~C~~~q~vFSh 22 (55)
T PF01667_consen 2 NSYFMDVKCPGCYNIQTVFSH 22 (55)
T ss_dssp S--EEEEE-TTT-SEEEEETT
T ss_pred CccEEEEECCCCCCeeEEEec
Confidence 578999999999988875554
No 187
>PF10925 DUF2680: Protein of unknown function (DUF2680); InterPro: IPR024485 Members in this family of proteins are annotated as YckD however currently no function is known.
Probab=25.83 E-value=3.5e+02 Score=22.37 Aligned_cols=54 Identities=17% Similarity=0.295 Sum_probs=39.7
Q ss_pred CHHHHHHHHHHHhHHHHHhhcCcchhHHHHHHHhcC--CHHHHHHHHHHHhHHHHHHhhCcC
Q psy15035 22 SPQMKKDIVKELLPFTVAMIKSKYSNALVKHMLKSG--DENTKNEIIKALQPHVVTLLSHTT 81 (816)
Q Consensus 22 t~eqR~~I~~EL~~~i~eL~~d~yg~~vVQKlL~~g--s~eqr~~Ii~e~~g~v~~L~~h~~ 81 (816)
|++|...| ++|...++++-+ -+|.|.+++| |++|-+.|...+..+...+-.+-|
T Consensus 2 T~~Qk~el-~~l~~qm~e~kK-----~~idk~Ve~G~iTqeqAd~ik~~id~~~~~~~qnGf 57 (59)
T PF10925_consen 2 TDQQKKEL-KALYKQMLELKK-----QIIDKYVEAGVITQEQADAIKKHIDQRQEYMQQNGF 57 (59)
T ss_pred CHHHHHHH-HHHHHHHHHHHH-----HHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHcCC
Confidence 45555555 677777777654 5789999999 899999999988877766655544
No 188
>smart00266 CAD Domains present in proteins implicated in post-mortem DNA fragmentation.
Probab=25.80 E-value=1.5e+02 Score=25.66 Aligned_cols=55 Identities=20% Similarity=0.317 Sum_probs=39.3
Q ss_pred EEEEcCCCCcHHHHHHHHhhhhCCCCCCeEEEE--CCeecCCCccccccCCCCCCEEEEe
Q psy15035 617 VCVNLDPASDIRNVKEMIAPKLGLKYEEVKIIF--AGKELEDTTIISECDLGQQSILHAV 674 (816)
Q Consensus 617 ~~v~V~~~~TV~~LK~~I~~~~Gip~~~qrLif--~Gk~L~d~~tL~~~~I~~~stl~lv 674 (816)
...-|-. .|.++|+.+..++.++|....+|.. .|.+++|+.=+.. +.+++.++++
T Consensus 12 ~k~GV~A-~sL~eL~~K~~~~l~l~~~~~~l~L~eDGT~VddEeyF~t--Lp~nt~l~~L 68 (74)
T smart00266 12 VRKGVAA-SSLEELLSKVCDKLALPDSPVTLVLEEDGTIVDDEEYFQT--LPDNTELMAL 68 (74)
T ss_pred eeEEEEc-CCHHHHHHHHHHHhCCCCCCcEEEEecCCcEEccHHHHhc--CCCCcEEEEE
Confidence 3333433 3799999999999999976666643 7888877655544 5667777666
No 189
>cd01764 Urm1 Urm1-like ubuitin domain. Urm1 (Ubiquitin-Related Modifier1) The Urm1 fold, like those of two closely related proteins MoaD (molybdopterin synthase) and ThiS (sulfur carrier protein), is similar to that of ubiquitin although there is little or no sequence similarity. The C-terminal glycines of Urm1 are conjugated to an E1-like protein Uba4 as part of a novel conjugation system in yeast. The Urm1 fold is found only in eukaryotes.
Probab=25.25 E-value=1.4e+02 Score=26.88 Aligned_cols=59 Identities=12% Similarity=0.195 Sum_probs=36.5
Q ss_pred EEcCCCCcHHHHHHHHhhhhCCCCCCeEEEECCee-------cCCCc---cc--cccCCCCCCEEEEe-eCCCC
Q psy15035 619 VNLDPASDIRNVKEMIAPKLGLKYEEVKIIFAGKE-------LEDTT---II--SECDLGQQSILHAV-KSSPE 679 (816)
Q Consensus 619 v~V~~~~TV~~LK~~I~~~~Gip~~~qrLif~Gk~-------L~d~~---tL--~~~~I~~~stl~lv-r~~gg 679 (816)
++++...||.+|-..+.... |+..-+++..+.. |-|+. .+ .++-+++|+.|.++ ...||
T Consensus 23 ~~~~~~~tV~dll~~L~~~~--~~~~~~lf~~~g~lr~~i~VlvN~~di~~l~g~~t~L~dgD~v~i~P~v~GG 94 (94)
T cd01764 23 LDGEKPVTVGDLLDYVASNL--LEERPDLFIEGGSVRPGIIVLINDTDWELLGEEDYILEDGDHVVFISTLHGG 94 (94)
T ss_pred ccCCCCCcHHHHHHHHHHhC--chhhhhhEecCCcccCCEEEEECCccccccCCcccCCCCcCEEEEECCCCCC
Confidence 34446779999999998776 3333344433211 22222 23 35779999999999 55554
No 190
>smart00314 RA Ras association (RalGDS/AF-6) domain. RasGTP effectors (in cases of AF6, canoe and RalGDS); putative RasGTP effectors in other cases. Kalhammer et al. have shown that not all RA domains bind RasGTP. Predicted structure similar to that determined, and that of the RasGTP-binding domain of Raf kinase. Predicted RA domains in PLC210 and nore1 found to bind RasGTP. Included outliers (Grb7, Grb14, adenylyl cyclases etc.)
Probab=25.08 E-value=1.9e+02 Score=25.30 Aligned_cols=44 Identities=18% Similarity=0.300 Sum_probs=33.2
Q ss_pred eEEEEEe-cCCceEEEEcCCCCcHHHHHHHHhhhhCCCC--CCeEEE
Q psy15035 605 LMINIKS-NTGNTVCVNLDPASDIRNVKEMIAPKLGLKY--EEVKII 648 (816)
Q Consensus 605 M~V~Vk~-~~g~t~~v~V~~~~TV~~LK~~I~~~~Gip~--~~qrLi 648 (816)
++|+.-. .++...+|.|++++|..++-..+.++.|++. ....|+
T Consensus 5 lrV~~~~~~~~~~kti~v~~~tTa~~Vi~~~l~k~~l~~~~~~y~L~ 51 (90)
T smart00314 5 LRVYVDDLPGGTYKTLRVSSRTTARDVIQQLLEKFHLTDDPEEYVLV 51 (90)
T ss_pred EEEecccCCCCcEEEEEECCCCCHHHHHHHHHHHhCCCCCcccEEEE
Confidence 4455433 2356678999999999999999999999975 455553
No 191
>KOG1296|consensus
Probab=24.98 E-value=41 Score=32.75 Aligned_cols=43 Identities=23% Similarity=0.612 Sum_probs=28.8
Q ss_pred cccceeccCcCCCceeEecCCCCCccccccCcceeccccCCCCCCCCcccceeEeecc
Q psy15035 724 HFYLRVRCAQCKSGAVIVDRDPQSWSDVLEPRQISCHCTEEHCTTGPVSWAEFYFKCA 781 (816)
Q Consensus 724 ~f~lRv~C~~C~~~~~t~~~~p~~w~dvl~~~ri~g~c~~~~c~~~~~~~a~f~fkc~ 781 (816)
+||+..+|.+|+-. +--|-+|-.-.+. .-+|+ -..|.|++||-
T Consensus 26 rf~~kLkCtnCgE~-------~dkw~~I~l~E~~-------~~pg~-Rgta~~v~KCK 68 (161)
T KOG1296|consen 26 RFYLKLKCTNCGEL-------SDKWQYITLNEEV-------AMPGS-RGTASFVMKCK 68 (161)
T ss_pred eeEEEecccccccc-------CCceEEEEeeeee-------cCCCC-cchhhHhhhhh
Confidence 49999999999873 4578777665555 22322 22568888873
No 192
>cd01768 RA RA (Ras-associating) ubiquitin domain. The RA (Ras-associating) domain is structurally similar to ubiquitin and is present in one or two copies in a number of signalling molecules that bind and regulate a small GTPase called Ras or the Ras-related GTPases, Ral and Rap. RA-containing proteins include RalGDS, AF6, RIN1, RASSF1, SNX27, CYR1, STE50, and phospholipase C epsilon.
Probab=24.07 E-value=2e+02 Score=24.98 Aligned_cols=35 Identities=17% Similarity=0.361 Sum_probs=29.2
Q ss_pred CceEEEEcCCCCcHHHHHHHHhhhhCCC--CCCeEEE
Q psy15035 614 GNTVCVNLDPASDIRNVKEMIAPKLGLK--YEEVKII 648 (816)
Q Consensus 614 g~t~~v~V~~~~TV~~LK~~I~~~~Gip--~~~qrLi 648 (816)
+...+|.|++++|..++-..+.++.|+. +.+..|+
T Consensus 12 ~~~kti~V~~~~t~~~Vi~~~l~k~~l~~~~~~y~L~ 48 (87)
T cd01768 12 GTYKTLRVSKDTTAQDVIQQLLKKFGLDDDPEDYALV 48 (87)
T ss_pred ccEEEEEECCCCCHHHHHHHHHHHhCCcCCcccEEEE
Confidence 5567899999999999999999999987 5555554
No 193
>cd06410 PB1_UP2 Uncharacterized protein 2. The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions.
Probab=24.01 E-value=2e+02 Score=26.26 Aligned_cols=40 Identities=15% Similarity=0.287 Sum_probs=34.7
Q ss_pred EEecCCceEEEEcCCCCcHHHHHHHHhhhhCCCCCCeEEEE
Q psy15035 609 IKSNTGNTVCVNLDPASDIRNVKEMIAPKLGLKYEEVKIIF 649 (816)
Q Consensus 609 Vk~~~g~t~~v~V~~~~TV~~LK~~I~~~~Gip~~~qrLif 649 (816)
++..+|.+-.+.|+.+.|..+|+.++.+..+++.. ..|-|
T Consensus 17 l~Y~GG~tr~i~V~r~~s~~el~~kl~~~~~~~~~-~~lky 56 (97)
T cd06410 17 LRYVGGETRIVSVDRSISFKELVSKLSELFGAGVV-VTLKY 56 (97)
T ss_pred EEEcCCceEEEEEcCCCCHHHHHHHHHHHhCCCCc-eEEEE
Confidence 57889999999999999999999999999999876 44433
No 194
>KOG3076|consensus
Probab=23.77 E-value=1.3e+02 Score=30.88 Aligned_cols=95 Identities=15% Similarity=0.048 Sum_probs=55.8
Q ss_pred HHHHHHhhhcCCCCCcceecccc-CCCCcccceEEEEe--CCCCCCCCCcchhhhhchhhhhhhhhhhheeccCCCCCce
Q psy15035 529 LLEELEHGQRGVGDGTISWGLEN-DDDMTLTHWTGMII--GPPRTSTTGHIMDTIIGYIMSVLNEILHLFWISRKPDNTL 605 (816)
Q Consensus 529 l~~el~~~~~~~~~~~~s~gl~~-~~d~~l~~w~~~i~--GP~~t~~e~~~~~l~i~f~~~yp~~~p~~~~~~~~~~~~M 605 (816)
|-++|.++. +|--+.+|--. -+-.++..|.+.|+ .|.-.|-..|.+...-.|-.-.-..++++
T Consensus 79 L~~~l~e~~---~d~v~lAG~M~iLs~~fl~~~~~~iiNIHPaLlpaFkG~~a~k~Aleagv~~~Gctv----------- 144 (206)
T KOG3076|consen 79 LAEVLLELG---TDLVCLAGYMRILSGEFLSQLPKRIINIHPALLPAFKGLHAIKQALEAGVKLSGCTV----------- 144 (206)
T ss_pred HHHHHHHhC---CCEEEehhhHHHcCHHHHhhcccceEecccccccccCCchHHHHHHHhccccccceE-----------
Confidence 444444543 44433444321 23458889999986 57776666777654333322222233333
Q ss_pred EEEEEe--cCCceE---EEEcCCCCcHHHHHHHHhhhh
Q psy15035 606 MINIKS--NTGNTV---CVNLDPASDIRNVKEMIAPKL 638 (816)
Q Consensus 606 ~V~Vk~--~~g~t~---~v~V~~~~TV~~LK~~I~~~~ 638 (816)
=||-. -+|..+ .+.|.++||++.|-++|...+
T Consensus 145 -HfV~EevD~G~iI~q~~v~V~~~Dt~esl~qrv~~aE 181 (206)
T KOG3076|consen 145 -HFVIEEVDTGPIIAQMAVPVIPGDTLESLEQRVHDAE 181 (206)
T ss_pred -EEehhhccCCCceEEEeeeecCCCCHHHHHHHHHHHH
Confidence 34433 256654 467889999999999998775
No 195
>PRK07194 fliG flagellar motor switch protein G; Reviewed
Probab=23.32 E-value=3.3e+02 Score=30.45 Aligned_cols=134 Identities=5% Similarity=0.041 Sum_probs=76.0
Q ss_pred HHHHhcCCHHHHHHHHHHHhHHHHHHhhCcCchHHHHHHHHhcCCHHHHHHHHHHHhcCccee--eccCCcchhHHhhcC
Q psy15035 51 KHMLKSGDENTKNEIIKALQPHVVTLLSHTTASPVLMYAHDQVASPAQKLAMRQELYGGLYES--TGDKKINCLGDIFEQ 128 (816)
Q Consensus 51 QKlL~~gs~eqr~~Ii~e~~g~v~~L~~h~~G~~VVqk~~~~~at~eQr~~Li~e~yg~~~~l--~kd~~~~~l~~ile~ 128 (816)
-++|++-++++...|..++.. + ..-++++...+++||+...-.. +...+...+.++++.
T Consensus 26 a~vl~~L~~~ei~~l~~~m~~------------------l-~~v~~~~~~~vl~eF~~~~~~~~~~~~g~~~~~~~~L~~ 86 (334)
T PRK07194 26 AMVMQQLSREEVQRLSQKMAR------------------L-SGIKVDQARQVLQRFFDDYREQSGINGASRSYLQRTLNK 86 (334)
T ss_pred HHHHhcCCHHHHHHHHHHHHh------------------C-CCCCHHHHHHHHHHHHHHHHhcCCcccchHHHHHHHHHH
Confidence 455566666666665554321 1 3567788888888886553211 111123345677766
Q ss_pred --ChhHHHHHHHHHHHHHHHhhhhhcccCCcchhhhHHHhhhcCCChhhHHHHHHHhCCCCccccccCcChHHHHHHHHh
Q psy15035 129 --SPEMKTAILSVTKKTILKSLQKTQVTGSALLHAVLLDFISHSSDSPDLMEVLEMLAPLPLLPFVHSKAGASVAMHIIW 206 (816)
Q Consensus 129 --~pekk~~Il~~l~~~l~~lv~K~~~~~~~ivh~vl~ey~~~~~~~~~~~~iie~l~~~~l~~L~~tk~Gs~Vv~~cl~ 206 (816)
.+++-..|++.+...- .. -.|+++...++ +....++..=+++ ...++-.+=|...+-..|.
T Consensus 87 alg~~~a~~il~~i~~~~---------~~------~~~~~L~~~~~-~~la~~l~~EhPQ-~iAiiL~~L~~e~AA~VL~ 149 (334)
T PRK07194 87 ALGGDIAKSLINSIYGDE---------IR------HRMQRLQWVDP-QQLARLIANEHLQ-MQAVFLAFLPPESAAAVLK 149 (334)
T ss_pred HcCHHHHHHHHHHHhccc---------cC------chHHHHHCCCH-HHHHHHHHccCHH-HHHHHHHhcCHHHHHHHHH
Confidence 3556666666544321 00 13455665666 5555555555555 5555555556677777777
Q ss_pred hcCHHHHHHHHHHH
Q psy15035 207 NATNKLKKKIVKEL 220 (816)
Q Consensus 207 ~~~~kdRk~Iik~l 220 (816)
+-+++.+..|+..|
T Consensus 150 ~Lpe~~~~~v~~ri 163 (334)
T PRK07194 150 YLPEDRQDDILYRI 163 (334)
T ss_pred hCCHHHHHHHHHHH
Confidence 77777777776555
No 196
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=22.53 E-value=1.7e+03 Score=28.54 Aligned_cols=94 Identities=14% Similarity=0.119 Sum_probs=72.5
Q ss_pred HHHHhhhhcCCHHHHHHHHHHHhH------------HHHHhhcCcchhHHHHHHHhcCCHHHHHHHHHHHhHHHHHHhhC
Q psy15035 12 RIIQWLLKLSSPQMKKDIVKELLP------------FTVAMIKSKYSNALVKHMLKSGDENTKNEIIKALQPHVVTLLSH 79 (816)
Q Consensus 12 RvIQ~~lk~gt~eqR~~I~~EL~~------------~i~eL~~d~yg~~vVQKlL~~gs~eqr~~Ii~e~~g~v~~L~~h 79 (816)
++|+.....+..++-..+.++... -+..+..++|+++..-.++.--+.+.+-.|++.++..+.....+
T Consensus 36 ~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv~~l~~~~~~~~~~~ve~~~~~i~~~~~~ 115 (906)
T PRK14720 36 DLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLLNLIDSFSQNLKWAIVEHICDKILLYGEN 115 (906)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhhhhhhhcccccchhHHHHHHHHHHhhhhh
Confidence 566666666777777777666321 23788999999999999999888887889999999999999999
Q ss_pred cCchHHHHHHHHhcCCHHHHHHHHHH
Q psy15035 80 TTASPVLMYAHDQVASPAQKLAMRQE 105 (816)
Q Consensus 80 ~~G~~VVqk~~~~~at~eQr~~Li~e 105 (816)
+|+-+.+-.+|+.....+.-..+.++
T Consensus 116 k~Al~~LA~~Ydk~g~~~ka~~~yer 141 (906)
T PRK14720 116 KLALRTLAEAYAKLNENKKLKGVWER 141 (906)
T ss_pred hHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 99999999999766555544444433
No 197
>cd01615 CIDE_N CIDE_N domain, found at the N-terminus of the CIDE (cell death-inducing DFF45-like effector) proteins, as well as CAD nuclease (caspase-activated DNase/DNA fragmentation factor, DFF40) and its inhibitor, ICAD(DFF45). These proteins are associated with the chromatin condensation and DNA fragmentation events of apoptosis; the CIDE_N domain is thought to regulate the activity of ICAD/DFF45, and the CAD/DFF40 and CIDE nucleases during apoptosis. The CIDE-N domain is also found in the FSP27/CIDE-C protein.
Probab=22.25 E-value=2e+02 Score=25.29 Aligned_cols=63 Identities=14% Similarity=0.284 Sum_probs=42.1
Q ss_pred EEEecCCceEEEEcCCCCcHHHHHHHHhhhhCCCCCCeEEEE--CCeecCCCccccccCCCCCCEEEEe
Q psy15035 608 NIKSNTGNTVCVNLDPASDIRNVKEMIAPKLGLKYEEVKIIF--AGKELEDTTIISECDLGQQSILHAV 674 (816)
Q Consensus 608 ~Vk~~~g~t~~v~V~~~~TV~~LK~~I~~~~Gip~~~qrLif--~Gk~L~d~~tL~~~~I~~~stl~lv 674 (816)
.|+.. .++...-|-.. |.++|+.+..++.++|....+|+. .|.+++|+.=+.. +.+++.++++
T Consensus 6 kV~~~-~r~~k~GV~A~-sL~eL~~K~~~~l~l~~~~~~lvL~eDGTeVddEeYF~t--Lp~nT~l~~l 70 (78)
T cd01615 6 KVCDS-DRSRKKGVAAS-SLEELLSKACEKLKLPSAPVTLVLEEDGTEVDDEEYFQT--LPDNTVLMLL 70 (78)
T ss_pred EEecC-CCCeeEEEEcC-CHHHHHHHHHHHcCCCCCCeEEEEeCCCcEEccHHHHhc--CCCCcEEEEE
Confidence 34443 23334444433 799999999999999776666653 7888876654444 5667777776
No 198
>PF01428 zf-AN1: AN1-like Zinc finger; InterPro: IPR000058 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the AN1-type zinc finger domain, which has a dimetal (zinc)-bound alpha/beta fold. This domain was first identified as a zinc finger at the C terminus of AN1 Q91889 from SWISSPROT, a ubiquitin-like protein in Xenopus laevis []. The AN1-type zinc finger contains six conserved cysteines and two histidines that could potentially coordinate 2 zinc atoms. Certain stress-associated proteins (SAP) contain AN1 domain, often in combination with A20 zinc finger domains (SAP8) or C2H2 domains (SAP16) []. For example, the human protein Znf216 has an A20 zinc-finger at the N terminus and an AN1 zinc-finger at the C terminus, acting to negatively regulate the NFkappaB activation pathway and to interact with components of the immune response like RIP, IKKgamma and TRAF6. The interact of Znf216 with IKK-gamma and RIP is mediated by the A20 zinc-finger domain, while its interaction with TRAF6 is mediated by the AN1 zinc-finger domain; therefore, both zinc-finger domains are involved in regulating the immune response []. The AN1 zinc finger domain is also found in proteins containing a ubiquitin-like domain, which are involved in the ubiquitination pathway []. Proteins containing an AN1-type zinc finger include: Ascidian posterior end mark 6 (pem-6) protein []. Human AWP1 protein (associated with PRK1), which is expressed during early embryogenesis []. Human immunoglobulin mu binding protein 2 (SMUBP-2), mutations in which cause muscular atrophy with respiratory distress type 1 []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 1WFP_A 1WYS_A 1WG2_A 1WFH_A 1X4W_A 1WFE_A 1WFL_A 1X4V_A.
Probab=21.40 E-value=59 Score=24.83 Aligned_cols=28 Identities=29% Similarity=0.778 Sum_probs=19.1
Q ss_pred eeccccCCCCCCCCcccceeEeecccccccCCCCCccccccc
Q psy15035 757 ISCHCTEEHCTTGPVSWAEFYFKCAQHVSANMNQVDECLPLS 798 (816)
Q Consensus 757 i~g~c~~~~c~~~~~~~a~f~fkc~~h~~~~~~~~~~~~~l~ 798 (816)
+...|. .|.+ .| |.+|+.. |++.+..++
T Consensus 12 ~~~~C~--~C~~------~F---C~~Hr~~---e~H~C~~~~ 39 (43)
T PF01428_consen 12 LPFKCK--HCGK------SF---CLKHRLP---EDHNCSKLQ 39 (43)
T ss_dssp SHEE-T--TTS-------EE----TTTHST---TTCT-SSTT
T ss_pred CCeECC--CCCc------cc---CccccCc---cccCCcchh
Confidence 567788 7865 89 9999997 788887664
No 199
>cd01766 Ufm1 Urm1-like ubiquitin domain. Ufm1 (ubiquitin-fold modifier 1) is a post-translational UBL (ubiquitin-like) modifier with a tertiary structure similar to that of ubiquitin. Ufm1 is initially expressed as a precursor which undergoes C-terminal cleavage to expose a conserved glycine residue that is required for the conjugation reactions involving Ufm1.
Probab=21.29 E-value=4.2e+02 Score=22.99 Aligned_cols=61 Identities=13% Similarity=0.160 Sum_probs=49.9
Q ss_pred EEEcCCCCcHHHHHHHHhhhhCCCCCCeEEEE-CCeecCCCccccccCCCCCCEEEEe-eCCC
Q psy15035 618 CVNLDPASDIRNVKEMIAPKLGLKYEEVKIIF-AGKELEDTTIISECDLGQQSILHAV-KSSP 678 (816)
Q Consensus 618 ~v~V~~~~TV~~LK~~I~~~~Gip~~~qrLif-~Gk~L~d~~tL~~~~I~~~stl~lv-r~~g 678 (816)
.+.|..+.....+-+-.+++..+|+..--+|- .|--+...+|-...=++.|+-+.++ |.+-
T Consensus 19 vlsVpE~aPftAvlkfaAEeFkv~~~TsAiiTndGvGINP~qtAGnvflkhgselrliPRDrv 81 (82)
T cd01766 19 VLSVPESTPFTAVLKFAAEEFKVPAATSAIITNDGIGINPAQTAGNVFLKHGSELRLIPRDRV 81 (82)
T ss_pred EEeccccCchHHHHHHHHHhcCCCccceeEEecCccccChhhcccceeeecCCEeeecccccC
Confidence 35788887777777888999999998877765 5666788899999999999999999 7654
No 200
>PTZ00083 40S ribosomal protein S27; Provisional
Probab=20.98 E-value=93 Score=27.62 Aligned_cols=24 Identities=13% Similarity=0.569 Sum_probs=19.0
Q ss_pred CCCccccceeccCcCCCceeEecC
Q psy15035 720 PSKAHFYLRVRCAQCKSGAVIVDR 743 (816)
Q Consensus 720 ~~~~~f~lRv~C~~C~~~~~t~~~ 743 (816)
+.-+|||++|+|..|..-....+.
T Consensus 27 ~~PnS~Fm~VkCp~C~n~q~VFSh 50 (85)
T PTZ00083 27 QGPNSYFMDVKCPGCSQITTVFSH 50 (85)
T ss_pred cCCCCeEEEEECCCCCCeeEEEec
Confidence 334799999999999987775554
No 201
>KOG1364|consensus
Probab=20.84 E-value=85 Score=34.97 Aligned_cols=66 Identities=14% Similarity=0.159 Sum_probs=54.5
Q ss_pred eEEEEEecCCceEEEEcCCCCcHHHHHHHHhhhh-CCCCCCeEEEECC---eec--CCCccccccCCCCCCE
Q psy15035 605 LMINIKSNTGNTVCVNLDPASDIRNVKEMIAPKL-GLKYEEVKIIFAG---KEL--EDTTIISECDLGQQSI 670 (816)
Q Consensus 605 M~V~Vk~~~g~t~~v~V~~~~TV~~LK~~I~~~~-Gip~~~qrLif~G---k~L--~d~~tL~~~~I~~~st 670 (816)
-.|.||+++|+-.......+++|.-|=..+.... |-+-+.++|+++- |.| ..+.|+.++||.+..+
T Consensus 278 t~i~vR~pdG~R~qrkf~~sepv~ll~~~~~s~~dg~~k~~FkLv~a~P~~k~l~~~~daT~~eaGL~nS~~ 349 (356)
T KOG1364|consen 278 TSIQVRFPDGRRKQRKFLKSEPVQLLWSFCYSHMDGSDKKRFKLVQAIPASKTLDYGADATFKEAGLANSET 349 (356)
T ss_pred eEEEEecCCccHHHHhhccccHHHHHHHHHHHhhcccccccceeeecccchhhhhccccchHHHhccCcccc
Confidence 4589999999887777788999998887776664 7888889999887 555 4678999999999876
No 202
>PRK11130 moaD molybdopterin synthase small subunit; Provisional
Probab=20.39 E-value=5.4e+02 Score=22.16 Aligned_cols=56 Identities=9% Similarity=0.055 Sum_probs=34.5
Q ss_pred EEcCC-CCcHHHHHHHHhhhhC-----CCCCCeEEEECCeecCCCccccccCCCCCCEEEEe-eCCCC
Q psy15035 619 VNLDP-ASDIRNVKEMIAPKLG-----LKYEEVKIIFAGKELEDTTIISECDLGQQSILHAV-KSSPE 679 (816)
Q Consensus 619 v~V~~-~~TV~~LK~~I~~~~G-----ip~~~qrLif~Gk~L~d~~tL~~~~I~~~stl~lv-r~~gg 679 (816)
+++++ ..||.+|++.+.++.. ......++.-++..-.+ +.-|++|+.|-++ +..||
T Consensus 19 ~~v~~~~~tv~~l~~~L~~~~~~~~~~~~~~~~~~aVN~~~~~~-----~~~l~dgDeVai~PPVsGG 81 (81)
T PRK11130 19 LELAADFPTVEALRQHLAQKGDRWALALEDGKLLAAVNQTLVSF-----DHPLTDGDEVAFFPPVTGG 81 (81)
T ss_pred EEecCCCCCHHHHHHHHHHhCccHHhhhcCCCEEEEECCEEcCC-----CCCCCCCCEEEEeCCCCCC
Confidence 34433 4799999999988752 12233344445533222 3458889999999 55554
No 203
>PF10209 DUF2340: Uncharacterized conserved protein (DUF2340); InterPro: IPR018794 This entry consists of small proteins of approximately 150 amino acids whose function is unknown.
Probab=20.38 E-value=1.7e+02 Score=27.80 Aligned_cols=54 Identities=19% Similarity=0.266 Sum_probs=37.7
Q ss_pred cCC-CCcHHHHHHHHhhh----hCCCCC------CeEEEEC-----------------Ceec---CCCccccccCCCCCC
Q psy15035 621 LDP-ASDIRNVKEMIAPK----LGLKYE------EVKIIFA-----------------GKEL---EDTTIISECDLGQQS 669 (816)
Q Consensus 621 V~~-~~TV~~LK~~I~~~----~Gip~~------~qrLif~-----------------Gk~L---~d~~tL~~~~I~~~s 669 (816)
|+. +.||.+|++.+.+. .|+||- ..+|+.. +..| +++.||.++||.+.+
T Consensus 22 vdL~~~Tv~~l~~~v~~~I~t~~~~~Pfrn~~yDtlKIy~~AHg~Kt~nLvInle~De~~iL~~~~~~~tL~~~gv~nET 101 (122)
T PF10209_consen 22 VDLKDTTVKDLKEQVKQDIKTRPGLPPFRNVKYDTLKIYTKAHGSKTNNLVINLEDDEDWILDVSDDDKTLKELGVENET 101 (122)
T ss_pred CCcccCcHHHHHHHHHHHHhcCCCCCCceeeecceEEEEecCCCCCcCCceeeccCCcceeeecCCCCCcHHHcCCCccc
Confidence 665 88999988777665 466664 3444321 1456 678899999999988
Q ss_pred EEEEe
Q psy15035 670 ILHAV 674 (816)
Q Consensus 670 tl~lv 674 (816)
-|-+.
T Consensus 102 EiSfF 106 (122)
T PF10209_consen 102 EISFF 106 (122)
T ss_pred eeeee
Confidence 88776
Done!