Query psy15035
Match_columns 816
No_of_seqs 539 out of 2280
Neff 6.9
Searched_HMMs 29240
Date Fri Aug 16 18:46:52 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15035.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/15035hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3gvo_A Pumilio 2, pumilio homo 100.0 2.4E-46 8.3E-51 414.3 19.9 306 1-350 28-342 (351)
2 3k49_A MRNA-binding protein PU 100.0 1E-46 3.5E-51 420.1 15.1 304 1-367 33-340 (369)
3 3bwt_A Protein PUF4; pumilio, 100.0 3.5E-45 1.2E-49 402.1 21.0 292 1-365 15-308 (333)
4 3k62_A FEM-3 mRNA-binding fact 100.0 9.4E-42 3.2E-46 383.9 15.4 323 1-347 31-399 (412)
5 3v71_A PUF (pumilio/FBF) domai 100.0 1.7E-41 5.9E-46 379.0 16.3 325 1-350 22-381 (382)
6 3gvo_A Pumilio 2, pumilio homo 100.0 1.4E-40 4.8E-45 368.2 15.5 300 27-363 18-319 (351)
7 3bwt_A Protein PUF4; pumilio, 100.0 1.3E-36 4.5E-41 333.8 17.7 269 2-278 52-331 (333)
8 3k49_A MRNA-binding protein PU 100.0 2.2E-37 7.6E-42 344.8 9.3 267 2-278 70-357 (369)
9 3v71_A PUF (pumilio/FBF) domai 100.0 2.6E-36 8.8E-41 337.2 15.7 271 2-280 63-380 (382)
10 3k62_A FEM-3 mRNA-binding fact 100.0 1.4E-35 4.9E-40 333.6 18.6 272 2-281 72-402 (412)
11 3phx_B Ubiquitin-like protein 99.7 8.9E-18 3E-22 145.0 10.2 78 601-678 1-79 (79)
12 3u5c_f 40S ribosomal protein S 99.7 1.4E-18 4.7E-23 168.6 3.8 131 605-739 1-149 (152)
13 3plu_A Ubiquitin-like modifier 99.7 2.1E-17 7.3E-22 145.4 9.0 74 601-674 18-91 (93)
14 4fbj_B NEDD8; effector-HOST ta 99.7 3E-17 1E-21 145.0 9.9 77 605-681 1-78 (88)
15 4dwf_A HLA-B-associated transc 99.7 7.5E-17 2.6E-21 142.8 9.6 79 602-681 3-82 (90)
16 2hj8_A Interferon-induced 17 k 99.7 5E-17 1.7E-21 143.5 7.5 81 601-681 1-82 (88)
17 3dbh_I NEDD8; cell cycle, acti 99.7 1.2E-16 4.2E-21 140.5 9.7 79 601-679 9-88 (88)
18 3n3k_B Ubiquitin; hydrolase, p 99.7 9.8E-17 3.4E-21 140.1 8.9 80 603-682 2-82 (85)
19 1ndd_A NEDD8, protein (ubiquit 99.7 1.9E-16 6.6E-21 134.9 9.9 75 605-679 1-76 (76)
20 4hcn_B Polyubiquitin, ubiquiti 99.7 1.9E-16 6.6E-21 142.6 10.0 79 601-679 19-98 (98)
21 3k9o_B Ubiquitin, UBB+1; E2-25 99.7 2.6E-16 9E-21 140.9 10.3 78 605-682 2-80 (96)
22 2kan_A Uncharacterized protein 99.7 2.5E-16 8.4E-21 140.9 9.9 80 601-681 12-93 (94)
23 3mtn_B UBA80, ubcep1, ubiquiti 99.7 3.1E-16 1E-20 136.9 10.3 79 603-681 2-81 (85)
24 1wh3_A 59 kDa 2'-5'-oligoadeny 99.7 3E-16 1E-20 137.9 10.2 80 601-680 4-84 (87)
25 1wy8_A NP95-like ring finger p 99.7 4E-16 1.4E-20 137.7 10.9 81 601-681 4-87 (89)
26 1sif_A Ubiquitin; hydrophobic 99.6 2.9E-16 1E-20 138.6 9.5 78 603-680 8-86 (88)
27 3a9j_A Ubiquitin; protein comp 99.6 4.7E-16 1.6E-20 132.5 10.3 75 605-679 1-76 (76)
28 2uyz_B Small ubiquitin-related 99.6 1.9E-16 6.5E-21 136.6 7.8 76 604-679 3-79 (79)
29 1uh6_A Ubiquitin-like 5; beta- 99.6 1.9E-16 6.6E-21 142.0 7.6 72 603-674 27-98 (100)
30 1wyw_B Ubiquitin-like protein 99.6 2.6E-16 9E-21 141.5 8.4 79 601-679 18-97 (97)
31 3v6c_B Ubiquitin; structural g 99.6 5.5E-16 1.9E-20 137.7 10.3 77 601-677 14-91 (91)
32 1wgd_A Homocysteine-responsive 99.6 6.3E-16 2.2E-20 137.9 10.2 80 602-681 5-91 (93)
33 2kk8_A Uncharacterized protein 99.6 4.3E-16 1.5E-20 136.3 8.7 72 603-674 9-81 (84)
34 2faz_A Ubiquitin-like containi 99.6 7.7E-16 2.6E-20 132.4 10.0 74 603-676 1-77 (78)
35 2l7r_A Ubiquitin-like protein 99.6 5.4E-16 1.8E-20 138.4 8.7 77 601-679 16-93 (93)
36 2lxa_A Ubiquitin-like protein 99.6 3E-16 1E-20 138.0 6.8 71 604-674 1-75 (87)
37 1wgh_A Ubiquitin-like 3, HCG-1 99.6 2.5E-15 8.5E-20 138.8 12.7 83 601-683 13-106 (116)
38 1v2y_A 3300001G02RIK protein; 99.6 4.5E-16 1.5E-20 141.3 7.6 81 601-681 4-101 (105)
39 4eew_A Large proline-rich prot 99.6 9.9E-16 3.4E-20 135.0 9.1 73 601-674 14-86 (88)
40 3rt3_B Ubiquitin-like protein 99.6 1.7E-15 5.7E-20 148.4 11.6 80 601-680 78-158 (159)
41 3vdz_A Ubiquitin-40S ribosomal 99.6 1.5E-15 5.1E-20 140.0 10.2 77 603-679 34-111 (111)
42 1uel_A HHR23B, UV excision rep 99.6 2.9E-15 9.9E-20 134.1 11.3 70 605-674 1-73 (95)
43 4a20_A Ubiquitin-like protein 99.6 2E-15 6.9E-20 135.7 9.8 74 601-674 16-93 (98)
44 3m62_B UV excision repair prot 99.6 1.3E-15 4.5E-20 139.2 8.6 70 605-674 2-71 (106)
45 1yx5_B Ubiquitin; proteasome, 99.6 2.6E-15 8.9E-20 135.1 10.4 76 605-680 1-77 (98)
46 1se9_A Ubiquitin family; ubiqu 99.6 3.1E-15 1.1E-19 139.5 11.1 81 601-681 13-108 (126)
47 2xzm_9 RPS31E; ribosome, trans 99.6 1.5E-16 5.2E-21 158.3 2.3 73 605-682 1-74 (189)
48 2dzi_A Ubiquitin-like protein 99.6 2.7E-15 9.3E-20 129.7 9.9 76 601-676 4-80 (81)
49 3l0w_B Monoubiquitinated proli 99.6 2.8E-15 9.6E-20 148.3 10.9 78 605-682 1-79 (169)
50 1wju_A NEDD8 ultimate buster-1 99.6 2.4E-15 8.3E-20 134.8 9.3 74 606-679 17-94 (100)
51 1we6_A Splicing factor, putati 99.6 2.6E-15 8.9E-20 138.4 9.3 81 601-681 24-109 (111)
52 2wyq_A HHR23A, UV excision rep 99.6 4.3E-15 1.5E-19 129.8 10.2 73 602-674 3-78 (85)
53 3b1l_X E3 ubiquitin-protein li 99.4 1.2E-16 4.2E-21 136.7 0.0 74 605-678 1-75 (76)
54 2ojr_A Ubiquitin; lanthide-bin 99.6 6.7E-15 2.3E-19 135.6 11.1 78 602-679 33-111 (111)
55 4ajy_B Transcription elongatio 99.6 4E-15 1.4E-19 136.6 9.5 75 605-679 1-84 (118)
56 2gow_A HCG-1 protein, ubiquiti 99.6 5.2E-15 1.8E-19 138.6 10.4 82 601-682 14-106 (125)
57 1wx8_A Riken cDNA 4931431F19; 99.6 2.1E-15 7.3E-20 135.2 7.3 80 601-681 14-94 (96)
58 1v5o_A 1700011N24RIK protein; 99.6 7.1E-15 2.4E-19 133.4 10.7 82 601-682 4-91 (102)
59 2fnj_B Transcription elongatio 99.6 2.2E-15 7.5E-20 138.9 7.1 74 605-679 1-83 (118)
60 1yqb_A Ubiquilin 3; structural 99.6 5.4E-15 1.8E-19 133.7 9.3 78 601-679 19-97 (100)
61 1wx7_A Ubiquilin 3; ubiquitin- 99.6 9.3E-15 3.2E-19 133.5 10.5 80 601-681 14-94 (106)
62 1ttn_A DC-UBP, dendritic cell- 99.6 8E-15 2.7E-19 134.0 9.8 79 601-679 20-99 (106)
63 3q3f_A Ribonuclease/ubiquitin 99.6 5.9E-15 2E-19 147.8 9.6 152 522-681 20-183 (189)
64 2kdi_A Ubiquitin, vacuolar pro 99.6 1.1E-14 3.9E-19 134.7 10.7 79 603-681 8-87 (114)
65 1j8c_A Ubiquitin-like protein 99.5 1.3E-14 4.6E-19 136.3 10.2 79 602-681 30-109 (125)
66 2a4d_A Ubiquitin-conjugating e 99.5 2.9E-15 1E-19 146.4 5.7 115 521-640 22-143 (160)
67 2bwf_A Ubiquitin-like protein 99.5 1.7E-14 5.9E-19 123.3 9.9 70 604-674 4-73 (77)
68 2klc_A Ubiquilin-1; ubiquitin- 99.5 1.9E-14 6.6E-19 130.3 10.4 77 601-678 22-99 (101)
69 3u30_A Ubiquitin, linear DI-ub 99.5 1.3E-14 4.3E-19 144.1 9.8 80 600-679 92-172 (172)
70 1we7_A SF3A1 protein; structur 99.5 1.7E-14 5.8E-19 133.8 9.9 82 601-682 22-114 (115)
71 3u5e_m 60S ribosomal protein L 99.5 8E-16 2.8E-20 145.4 0.1 76 605-680 1-77 (128)
72 2kdb_A Homocysteine-responsive 99.5 1.6E-14 5.5E-19 130.1 7.4 73 602-674 21-99 (99)
73 2q0v_A Ubiquitin-conjugating e 99.5 8E-15 2.7E-19 142.9 5.7 115 520-641 17-139 (156)
74 1wia_A Hypothetical ubiquitin- 99.5 9.7E-14 3.3E-18 124.1 11.7 74 602-678 5-80 (95)
75 3b08_A Polyubiquitin-C, ubiqui 99.5 6.6E-14 2.3E-18 135.4 11.2 80 600-679 72-152 (152)
76 3u30_A Ubiquitin, linear DI-ub 99.5 5.2E-14 1.8E-18 139.7 10.6 79 601-679 17-96 (172)
77 2hlw_A Ubiquitin-conjugating e 99.5 8.3E-15 2.8E-19 144.7 4.4 119 515-640 28-153 (170)
78 1jat_B Ubiquitin-conjugating e 99.5 1.2E-14 4E-19 139.2 5.3 114 522-639 4-122 (138)
79 4dbg_A Ranbp-type and C3HC4-ty 99.5 1.1E-13 3.7E-18 125.1 9.2 73 602-674 22-97 (105)
80 1v5t_A 8430435I17RIK protein; 99.5 9.1E-14 3.1E-18 123.1 8.5 73 601-674 4-80 (90)
81 1wgg_A Ubiquitin carboxyl-term 99.5 1.5E-13 5.2E-18 123.2 9.9 71 602-674 5-76 (96)
82 3m63_B Ubiquitin domain-contai 99.5 3.9E-14 1.3E-18 128.2 6.0 71 603-674 27-97 (101)
83 3rt3_B Ubiquitin-like protein 99.5 1.3E-13 4.4E-18 135.0 10.1 76 604-679 2-81 (159)
84 1wxv_A BAG-family molecular ch 99.4 3.7E-13 1.3E-17 119.5 10.4 73 601-674 4-82 (92)
85 1x1m_A Ubiquitin-like protein 99.4 2.7E-13 9.3E-18 124.0 9.7 76 602-677 10-101 (107)
86 2dzm_A FAS-associated factor 1 99.4 3.7E-13 1.3E-17 121.2 9.5 71 603-674 7-79 (100)
87 3b08_A Polyubiquitin-C, ubiqui 99.4 3.8E-13 1.3E-17 130.0 10.3 75 605-679 1-76 (152)
88 2kd0_A LRR repeats and ubiquit 99.4 7.8E-13 2.7E-17 115.8 10.1 68 607-674 14-81 (85)
89 2daf_A FLJ35834 protein; hypot 99.4 2E-12 6.9E-17 118.0 11.1 73 602-674 13-86 (118)
90 1v86_A DNA segment, CHR 7, way 99.4 5.7E-13 1.9E-17 119.2 7.0 72 601-674 14-85 (95)
91 2dzj_A Synaptic glycoprotein S 99.4 6.2E-13 2.1E-17 117.2 6.8 70 604-673 10-85 (88)
92 2kjr_A CG11242; UBL, ubiquitin 99.4 1.6E-12 5.3E-17 116.2 8.8 74 601-674 12-93 (95)
93 3ai5_A Yeast enhanced green fl 99.3 1.8E-12 6.2E-17 138.8 10.1 77 601-677 230-307 (307)
94 1oqy_A HHR23A, UV excision rep 99.3 2E-12 6.9E-17 142.2 9.7 80 602-681 5-89 (368)
95 2kj6_A Tubulin folding cofacto 99.3 4.3E-12 1.5E-16 113.7 8.9 74 601-674 11-93 (97)
96 4b6w_A Tubulin-specific chaper 99.3 2.9E-12 9.8E-17 112.4 7.0 70 605-674 3-81 (86)
97 2a7l_A Hypothetical ubiquitin- 99.3 1.2E-12 4.2E-17 124.6 4.9 106 526-637 24-134 (136)
98 1fxt_A Ubiquitin-conjugating e 99.2 2.3E-12 8E-17 124.8 4.3 109 525-641 2-115 (149)
99 2awf_A Ubiquitin-conjugating e 99.2 3.5E-12 1.2E-16 126.4 5.4 108 523-641 16-143 (172)
100 2io1_B Small ubiquitin-related 99.2 1.1E-11 3.9E-16 110.4 8.1 80 601-680 4-84 (94)
101 2fo3_A Ubiquitin-conjugating e 99.2 2.7E-12 9.2E-17 120.7 4.2 108 525-642 7-120 (125)
102 2ayv_A Ubiquitin-conjugating e 99.2 3.9E-12 1.3E-16 125.3 5.3 116 515-640 12-132 (166)
103 3rcz_B SUMO-conjugating enzyme 99.2 3.7E-12 1.3E-16 125.1 5.1 112 523-641 9-129 (163)
104 2h2y_A Ubiquitin-conjugating e 99.2 4E-12 1.4E-16 121.2 4.7 109 524-642 20-134 (136)
105 1wf9_A NPL4 family protein; be 99.2 1.3E-11 4.3E-16 112.9 7.8 71 603-674 6-92 (107)
106 1yh2_A HSPC150 protein similar 99.2 4.5E-12 1.5E-16 125.4 4.7 108 524-641 4-120 (169)
107 2ucz_A UBC7, ubiquitin conjuga 99.2 6.7E-12 2.3E-16 123.7 5.5 105 524-639 4-128 (165)
108 1v6e_A Cytoskeleton-associated 99.2 3.5E-11 1.2E-15 107.5 9.6 71 604-674 7-85 (95)
109 2c4o_A Ubiquitin-conjugating e 99.2 8.3E-12 2.8E-16 122.9 4.9 106 524-639 19-129 (165)
110 3h8k_A Ubiquitin-conjugating e 99.2 9.8E-12 3.3E-16 122.4 5.4 106 526-640 5-128 (164)
111 2gjd_A Ubiquitin-conjugating e 99.2 8.3E-12 2.9E-16 122.0 4.7 111 524-641 4-123 (157)
112 2c2v_B Ubiquitin-conjugating e 99.2 8.4E-12 2.9E-16 121.5 4.6 107 525-641 6-117 (154)
113 1t0y_A Tubulin folding cofacto 99.2 5.2E-11 1.8E-15 111.4 9.8 74 601-674 3-84 (122)
114 2e2c_A Ubiquitin conjugating e 99.2 8.3E-12 2.8E-16 121.9 4.4 108 524-641 9-121 (156)
115 1ayz_A UBC2, ubiquitin-conjuga 99.2 7.3E-12 2.5E-16 123.7 4.1 108 524-641 4-116 (169)
116 2aak_A UBC1, ubiquitin conjuga 99.2 7.9E-12 2.7E-16 121.5 4.1 108 524-641 4-116 (152)
117 1zdn_A Ubiquitin-conjugating e 99.2 9.9E-12 3.4E-16 121.6 4.8 107 524-640 13-124 (158)
118 2pwq_A Ubiquitin conjugating e 99.2 1.1E-11 3.7E-16 126.9 4.7 110 523-641 22-136 (216)
119 3rz3_A Ubiquitin-conjugating e 99.2 1.4E-11 4.9E-16 123.2 5.4 106 524-640 7-132 (183)
120 2r0j_A Ubiquitin carrier prote 99.2 9.4E-12 3.2E-16 120.6 3.9 105 526-640 3-112 (149)
121 2grr_A Ubiquitin-conjugating e 99.2 1.2E-11 4E-16 121.4 4.6 109 525-640 8-125 (161)
122 4gpr_A Ubiquitin-conjugating e 99.2 1.2E-11 4.1E-16 120.1 4.6 106 525-640 5-115 (151)
123 1z2u_A Ubiquitin-conjugating e 99.2 9.9E-12 3.4E-16 120.5 3.9 106 524-639 4-114 (150)
124 2f4w_A Ubiquitin-conjugating e 99.2 9.5E-12 3.2E-16 124.8 3.9 107 523-641 13-127 (187)
125 1i7k_A Ubiquitin-conjugating e 99.2 1.1E-11 3.9E-16 123.3 4.0 108 522-639 28-140 (179)
126 3fn1_B NEDD8-conjugating enzym 99.1 2E-11 7E-16 120.4 5.3 110 522-641 12-132 (167)
127 3bzh_A Ubiquitin-conjugating e 99.1 2E-11 6.8E-16 123.1 4.8 108 523-640 47-159 (194)
128 1tte_A Ubiquitin-conjugating e 99.1 6.7E-12 2.3E-16 128.3 1.2 110 524-641 2-116 (215)
129 2io0_B Small ubiquitin-related 99.1 1.4E-10 4.8E-15 102.6 9.5 78 602-679 3-81 (91)
130 1yrv_A Ubiquitin-conjugating l 99.1 2E-11 6.8E-16 120.6 4.1 109 524-641 23-138 (169)
131 2kzr_A Ubiquitin thioesterase 99.1 5.1E-11 1.7E-15 104.4 6.2 69 605-674 1-75 (86)
132 1jat_A Ubiquitin-conjugating e 99.1 1.8E-11 6.3E-16 119.3 3.4 107 525-641 6-117 (155)
133 2f4z_A Tgtwinscan_2721 - E2 do 99.1 2.2E-11 7.7E-16 122.5 3.5 108 525-640 33-157 (193)
134 3shq_A UBLCP1; phosphatase, hy 99.1 1E-10 3.4E-15 126.9 8.2 71 603-674 4-77 (320)
135 2bep_A Ubiquitin-conjugating e 99.1 2.8E-11 9.7E-16 118.4 3.4 110 524-641 8-124 (159)
136 2y9m_A Ubiquitin-conjugating e 99.1 2.4E-11 8E-16 120.5 2.8 111 524-639 6-131 (172)
137 2d07_B Ubiquitin-like protein 99.1 3.3E-10 1.1E-14 100.7 9.1 78 602-679 15-93 (93)
138 3k9o_A Ubiquitin-conjugating e 99.0 3.9E-11 1.3E-15 122.0 2.4 110 524-641 5-121 (201)
139 1wz0_A Ubiquitin-like protein 99.0 4.7E-10 1.6E-14 101.7 9.1 79 602-680 22-101 (104)
140 3ceg_A Baculoviral IAP repeat- 99.0 5.3E-11 1.8E-15 127.9 3.4 75 523-599 75-150 (323)
141 1wm3_A Ubiquitin-like protein 99.0 7.6E-10 2.6E-14 93.6 9.2 70 605-674 2-71 (72)
142 3e46_A Ubiquitin-conjugating e 99.0 5.7E-11 1.9E-15 124.2 2.0 117 516-640 49-172 (253)
143 1y8x_A Ubiquitin-conjugating e 99.0 1.7E-10 5.9E-15 112.9 5.2 105 524-640 6-115 (160)
144 2nvu_C NEDD8-conjugating enzym 99.0 1.5E-10 5E-15 115.5 4.5 105 523-639 25-134 (180)
145 3a4r_A Nfatc2-interacting prot 99.0 1.6E-09 5.6E-14 93.3 10.1 74 601-674 4-78 (79)
146 2k8h_A Small ubiquitin protein 99.0 6.7E-10 2.3E-14 101.5 7.5 78 602-679 24-102 (110)
147 2eke_C Ubiquitin-like protein 99.0 1E-09 3.4E-14 99.6 8.4 77 602-679 29-106 (106)
148 1yf9_A Ubiquitin carrier prote 99.0 2.1E-10 7E-15 113.5 4.1 98 524-634 12-114 (171)
149 1wzv_A Ubiquitin-conjugating e 99.0 2.1E-10 7.1E-15 111.8 4.0 107 524-640 4-116 (155)
150 1c4z_D UBCH7, ubiquitin conjug 99.0 2.7E-10 9.2E-15 110.9 4.1 107 524-640 2-114 (154)
151 2z5d_A Ubiquitin-conjugating e 99.0 1.9E-10 6.6E-15 114.3 3.1 103 524-639 25-133 (179)
152 4ddg_A Ubiquitin-conjugating e 98.9 3.5E-10 1.2E-14 126.5 4.5 107 525-641 4-115 (399)
153 2onu_A Ubiquitin-conjugating e 98.9 2.1E-10 7.1E-15 111.4 1.8 101 526-638 4-110 (152)
154 3o2u_A NEDD8-conjugating enzym 98.9 1E-09 3.5E-14 110.3 5.0 108 523-640 28-144 (190)
155 4ds2_A Ubiquitin-conjugating e 98.9 3.8E-10 1.3E-14 111.3 1.3 107 524-639 8-133 (167)
156 1zuo_A Hypothetical protein LO 98.9 3E-10 1E-14 113.8 0.5 112 522-642 25-157 (186)
157 1wjn_A Tubulin-folding protein 98.8 1.9E-08 6.7E-13 89.9 9.5 73 602-674 7-90 (97)
158 3kyd_D Small ubiquitin-related 98.4 1.4E-06 4.9E-11 79.8 9.8 72 603-674 39-110 (115)
159 3pge_A SUMO-modified prolifera 98.3 1.5E-06 5.2E-11 87.3 9.8 79 602-681 27-106 (200)
160 3tix_A Ubiquitin-like protein 98.2 1.9E-06 6.5E-11 84.8 7.7 79 602-681 55-134 (207)
161 2z6o_A UFM1-conjugating enzyme 98.1 2.8E-07 9.4E-12 88.8 -0.0 63 526-599 34-106 (172)
162 2pjh_A Protein NPL4, nuclear p 98.1 1.3E-06 4.6E-11 75.1 4.0 72 602-674 2-78 (80)
163 3v7o_A Minor nucleoprotein VP3 97.9 1.3E-06 4.3E-11 87.2 0.2 77 602-679 19-96 (227)
164 4efo_A Serine/threonine-protei 97.9 1.9E-05 6.7E-10 69.5 6.7 64 611-674 20-86 (94)
165 3goe_A DNA repair protein RAD6 97.9 7.9E-05 2.7E-09 62.5 9.7 70 605-674 10-80 (82)
166 2jxx_A Nfatc2-interacting prot 97.5 0.00027 9.1E-09 62.9 8.6 73 602-674 23-96 (97)
167 3uf8_A Ubiquitin-like protein 97.4 0.00038 1.3E-08 70.8 8.5 79 601-680 18-97 (209)
168 2al3_A TUG long isoform; TUG U 97.2 0.00079 2.7E-08 58.5 7.5 73 602-674 7-79 (90)
169 3ix6_A TS, tsase, thymidylate 97.2 5.8E-05 2E-09 82.0 0.0 78 602-680 19-97 (360)
170 2l76_A Nfatc2-interacting prot 97.0 0.0026 8.9E-08 55.8 9.2 75 602-677 19-93 (95)
171 2kc2_A Talin-1, F1; FERM, adhe 96.8 0.00093 3.2E-08 62.2 4.7 69 606-674 13-120 (128)
172 3kpa_A Probable ubiquitin fold 96.5 0.00031 1.1E-08 66.1 -1.0 63 526-599 36-108 (168)
173 4da1_A Protein phosphatase 1K, 96.4 0.00051 1.8E-08 76.4 0.0 80 602-682 28-108 (389)
174 3qx1_A FAS-associated factor 1 96.3 0.012 4.1E-07 50.6 8.0 71 603-674 6-81 (84)
175 2bps_A YUKD protein; ubiquitin 96.3 0.006 2.1E-07 52.2 5.9 69 605-673 5-80 (81)
176 2dzk_A UBX domain-containing p 95.6 0.076 2.6E-06 48.0 10.4 73 602-674 11-88 (109)
177 1wj4_A KIAA0794 protein; UBX d 94.8 0.058 2E-06 50.0 7.3 73 602-675 41-118 (124)
178 2l32_A Small archaeal modifier 93.4 0.2 7E-06 41.9 7.2 65 605-679 1-66 (74)
179 2cr5_A Reproduction 8; UBX dom 93.0 0.19 6.6E-06 45.3 7.0 71 603-674 22-96 (109)
180 1ryj_A Unknown; beta/alpha pro 92.6 1.1 3.8E-05 36.8 10.4 67 603-679 3-70 (70)
181 1s3s_G P47 protein; AAA ATPase 92.5 0.23 7.8E-06 46.1 6.8 71 602-672 50-124 (127)
182 4e71_A Plexin-B2, MM1; transme 91.7 0.62 2.1E-05 42.0 8.4 71 604-674 11-108 (111)
183 2daj_A KIAA0977 protein, COBL- 88.6 0.64 2.2E-05 39.6 5.3 71 601-674 7-80 (91)
184 3r3q_A Suppressor protein STP2 88.1 0.22 7.6E-06 48.1 2.6 82 556-644 63-160 (162)
185 2r2o_A Plexin-B1; effector dom 87.9 1.6 5.4E-05 40.8 8.1 60 615-674 41-126 (138)
186 3h6n_A Plexin-D1; structural g 87.9 2.1 7E-05 39.4 8.7 62 613-674 15-102 (127)
187 3jyu_A Ubiquitin carboxyl-term 87.3 1.3 4.5E-05 45.3 8.0 64 616-679 153-224 (231)
188 1vjk_A Molybdopterin convertin 87.2 3.7 0.00013 35.8 9.9 72 603-679 8-98 (98)
189 1oey_A P67-PHOX, neutrophil cy 86.3 1.2 4E-05 38.1 5.8 48 603-652 4-51 (83)
190 3obq_A Tumor susceptibility ge 86.1 0.4 1.4E-05 45.6 3.1 79 553-639 49-137 (146)
191 4a3p_A Ubiquitin carboxyl-term 84.2 1.7 5.8E-05 43.9 7.0 64 616-679 141-212 (217)
192 4e74_A Plexin-A4; RBD, structu 83.3 2.5 8.6E-05 38.4 6.9 71 604-674 13-112 (117)
193 1tyg_B YJBS; alpha beta barrel 82.4 3.9 0.00013 35.2 7.5 69 601-679 17-87 (87)
194 3hjl_A Flagellar motor switch 82.2 15 0.00051 39.4 13.7 189 54-246 49-260 (329)
195 3rpf_C Molybdopterin convertin 82.1 4.8 0.00017 33.1 7.8 70 605-679 1-74 (74)
196 1wgk_A Riken cDNA 2900073H19 p 80.8 11 0.00036 34.1 10.1 75 601-679 8-108 (114)
197 3ivf_A Talin-1; FERM domain, c 80.2 4.9 0.00017 43.7 9.3 69 605-674 4-82 (371)
198 3kuz_A Plexin-C1; structural g 74.4 12 0.00042 34.2 8.5 60 615-674 39-124 (126)
199 2k9x_A Tburm1, uncharacterized 73.0 2.2 7.6E-05 38.4 3.3 77 601-679 1-102 (110)
200 3po0_A Small archaeal modifier 71.2 23 0.00078 29.9 9.3 60 615-679 18-89 (89)
201 2kl0_A Putative thiamin biosyn 70.2 8 0.00027 32.0 5.8 64 605-679 1-65 (73)
202 1f0z_A THis protein; ubiquitin 70.0 9.5 0.00033 30.6 6.2 60 613-679 6-66 (66)
203 3dwg_C 9.5 kDa culture filtrat 69.3 17 0.00058 31.1 8.1 73 605-679 1-93 (93)
204 1wfe_A Riken cDNA 2310008M20 p 68.9 2.8 9.7E-05 36.0 2.8 47 728-805 25-73 (86)
205 1wg2_A Zinc finger (AN1-like) 68.4 4.4 0.00015 32.8 3.6 37 728-795 15-51 (64)
206 2kvr_A Ubiquitin carboxyl-term 68.0 4 0.00014 37.8 3.9 33 618-650 59-91 (130)
207 2juo_A GA-binding protein alph 67.3 10 0.00036 32.2 5.8 58 617-674 5-62 (89)
208 1wfl_A Zinc finger protein 216 66.1 3.2 0.00011 34.5 2.5 37 728-795 25-61 (74)
209 1vd2_A Protein kinase C, IOTA 65.5 21 0.00072 30.8 7.7 50 602-652 4-54 (89)
210 3ig3_A Plxna3 protein; plexin 64.4 19 0.00066 41.4 9.2 70 605-674 234-332 (627)
211 1h4r_A Merlin; FERM, neurofibr 64.0 19 0.00065 37.9 8.8 73 601-674 19-96 (314)
212 3qa8_A MGC80376 protein; kinas 63.7 9.4 0.00032 45.1 6.9 52 612-663 319-371 (676)
213 2k5p_A THis protein, thiamine- 63.2 8.5 0.00029 32.3 4.7 65 605-679 1-69 (78)
214 3hm6_X Plexin-B1; structural g 61.7 21 0.0007 41.2 8.8 60 615-674 274-359 (644)
215 1ef1_A Moesin; membrane, FERM 61.7 23 0.00078 36.8 8.9 70 604-674 1-76 (294)
216 1fm0_D Molybdopterin convertin 59.9 24 0.00082 29.0 7.0 58 616-679 18-81 (81)
217 1wys_A Riken cDNA 2310008M20 p 58.9 5.8 0.0002 33.2 2.8 42 727-799 13-56 (75)
218 1wfh_A Zinc finger (AN1-like) 54.8 7.6 0.00026 31.4 2.7 37 728-795 15-51 (64)
219 2i1j_A Moesin; FERM, coiled-co 54.5 25 0.00084 40.7 8.2 72 602-674 2-79 (575)
220 2qjl_A URM1, ubiquitin-related 53.4 70 0.0024 27.5 9.2 72 605-679 2-99 (99)
221 4eut_A Serine/threonine-protei 50.8 29 0.001 37.4 7.8 62 613-674 320-384 (396)
222 2q5w_D Molybdopterin convertin 48.9 26 0.00088 28.6 5.3 59 615-679 16-77 (77)
223 3ivf_A Talin-1; FERM domain, c 47.5 40 0.0014 36.4 8.1 72 603-674 84-165 (371)
224 2l52_A Methanosarcina acetivor 44.4 83 0.0029 27.1 8.2 72 604-679 3-99 (99)
225 1wfp_A Zinc finger (AN1-like) 43.9 13 0.00045 30.9 2.6 37 728-795 25-61 (74)
226 1rws_A Hypothetical protein PF 43.7 11 0.00038 31.3 2.2 53 618-679 24-77 (77)
227 2c7h_A RBBP6, retinoblastoma-b 42.8 42 0.0014 28.7 5.7 70 605-678 7-82 (86)
228 2cu3_A Unknown function protei 42.1 54 0.0019 25.8 6.1 59 613-679 5-64 (64)
229 2g1e_A Hypothetical protein TA 41.5 74 0.0025 26.5 7.3 60 619-679 19-90 (90)
230 3qij_A Protein 4.1; cytoskelet 40.6 30 0.001 36.3 5.5 74 601-674 14-93 (296)
231 1x4v_A Hypothetical protein LO 38.6 10 0.00035 30.5 1.2 37 729-796 13-51 (63)
232 2kmm_A Guanosine-3',5'-BIS(dip 38.4 68 0.0023 25.5 6.3 61 605-674 1-61 (73)
233 1wgr_A Growth factor receptor- 38.1 76 0.0026 27.9 6.8 73 602-674 7-90 (100)
234 1ip9_A BEM1 protein; ubiquitin 37.4 71 0.0024 27.2 6.1 43 603-648 11-53 (85)
235 2kmc_A Fermitin family homolog 37.2 1.1E+02 0.0037 26.8 7.3 71 604-674 19-97 (102)
236 2inc_C TOUB protein; DIIRON, 4 34.3 1.8E+02 0.0062 24.5 8.1 59 616-674 14-80 (83)
237 1q1o_A Cell division control p 32.2 51 0.0017 28.9 4.6 39 603-641 4-49 (98)
238 3hjl_A Flagellar motor switch 31.1 4.6E+02 0.016 27.8 12.9 154 92-265 50-229 (329)
239 2ylm_A Ubiquitin carboxyl-term 30.6 28 0.00094 39.8 3.5 32 618-649 39-70 (530)
240 1y8x_B Ubiquitin-activating en 30.4 54 0.0019 28.7 4.5 59 616-674 6-82 (98)
241 1x4w_A Hypothetical protein FL 28.6 15 0.0005 30.0 0.5 40 728-795 15-54 (67)
242 3iz6_X 40S ribosomal protein S 25.9 55 0.0019 27.9 3.6 23 721-743 29-51 (86)
243 1qxf_A GR2, 30S ribosomal prot 24.6 34 0.0012 27.7 2.0 21 723-743 2-22 (66)
244 3u52_E Phenol hydroxylase comp 24.6 2.3E+02 0.0077 25.6 7.5 71 604-674 23-107 (119)
245 2ylm_A Ubiquitin carboxyl-term 24.0 84 0.0029 35.8 5.9 72 604-675 130-216 (530)
246 3ge3_C Toluene-4-monooxygenase 23.9 2E+02 0.0068 24.3 6.5 59 616-674 16-81 (84)
247 3u5c_b RP61, YS20, 40S ribosom 23.6 73 0.0025 26.9 3.8 24 720-743 26-49 (82)
248 3j20_W 30S ribosomal protein S 22.9 49 0.0017 26.6 2.5 23 721-743 8-30 (63)
249 2jtt_C Calcyclin-binding prote 22.4 55 0.0019 23.2 2.4 24 47-70 9-32 (35)
250 1wff_A Riken cDNA 2810002D23 p 22.3 49 0.0017 28.2 2.6 39 728-796 25-63 (85)
251 1zso_A Hypothetical protein; s 22.1 48 0.0016 31.8 2.8 42 723-782 32-75 (164)
252 3onh_A Ubiquitin-activating en 21.9 2E+02 0.0069 26.3 6.8 51 623-674 18-77 (127)
253 3au4_A Myosin-X; protein-prote 21.2 1.4E+02 0.0047 34.0 7.1 47 603-649 215-263 (555)
254 2hj1_A Hypothetical protein; s 20.9 1.9E+02 0.0065 25.1 6.3 68 603-675 11-84 (97)
255 3pkr_A FLIG, flagellar motor s 20.7 3.2E+02 0.011 28.3 9.0 32 192-223 138-169 (279)
No 1
>3gvo_A Pumilio 2, pumilio homolog 2; RNA-binding, PUF domain, RNA binding protein; HET: DTD; 1.60A {Mus musculus} SCOP: a.118.1.8 PDB: 3gvt_A 3q0q_A 3q0r_A 3q0s_A 1ib2_A 1m8w_A 1m8x_A 1m8y_A 1m8z_A 3q0l_A 3q0m_A 3q0n_A 3q0o_A 3q0p_A 2yjy_A 3bsx_A 3bsb_A 3h3d_X
Probab=100.00 E-value=2.4e-46 Score=414.34 Aligned_cols=306 Identities=17% Similarity=0.250 Sum_probs=274.1
Q ss_pred CccccccCCchHHHHhhhhcCCHHHHHHHHHHHhHHHHHhhcCcchhHHHHHHHhcCCHHHHHHHHHHHhHHHHHHhhCc
Q psy15035 1 MGQIVFSHDMSRIIQWLLKLSSPQMKKDIVKELLPFTVAMIKSKYSNALVKHMLKSGDENTKNEIIKALQPHVVTLLSHT 80 (816)
Q Consensus 1 i~~l~~~hd~sRvIQ~~lk~gt~eqR~~I~~EL~~~i~eL~~d~yg~~vVQKlL~~gs~eqr~~Ii~e~~g~v~~L~~h~ 80 (816)
|+++|++|+|||+||++|+++++++|+.||+|+.+++++||+|+||||||||+|+||+++||..|+++++|++++|+.|+
T Consensus 28 i~~la~dq~gsR~lQ~~l~~~~~~~~~~i~~ei~~~~~~L~~d~~gn~vvQklle~~~~~~~~~i~~~i~g~~~~l~~~~ 107 (351)
T 3gvo_A 28 IVEFSQDQHGSRFIQQKLERATPAERQIVFNEILQAAYQLMTDVFGNYVIQKFFEFGSLDQKLALATRIRGHVLPLALQM 107 (351)
T ss_dssp HHHHHTSHHHHHHHHHHHHHCCHHHHHHHHHHHGGGHHHHHTSTTHHHHHHHHHHHCCHHHHHHHHHHHTTCHHHHHTST
T ss_pred HHHHhcCCcchHHHHHHHhhCCHHHHHHHHHHHHHhHHHHHhChhhhHHHHHHHhhCCHHHHHHHHHHHHhhHHHHhhCH
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CchHHHHHHHHhcCCHHHHHHHHHHHhcCcceeeccC-CcchhHHhhcC-ChhHHHHHHHHHHHHHHHhhhhhcccCCcc
Q psy15035 81 TASPVLMYAHDQVASPAQKLAMRQELYGGLYESTGDK-KINCLGDIFEQ-SPEMKTAILSVTKKTILKSLQKTQVTGSAL 158 (816)
Q Consensus 81 ~G~~VVqk~~~~~at~eQr~~Li~e~yg~~~~l~kd~-~~~~l~~ile~-~pekk~~Il~~l~~~l~~lv~K~~~~~~~i 158 (816)
|||+|||++| ++++.+|+..|++||+|+.+.|++|. |++++|++++. .|+++..|++.+.+++..+... ..|+.+
T Consensus 108 ~G~rvvQk~l-e~~~~~~~~~i~~el~~~~~~L~~d~~Gn~ViQk~l~~~~~~~~~~i~~~~~~~~~~ls~~--~~G~~V 184 (351)
T 3gvo_A 108 YGCRVIQKAL-ESISSDQQSEMVKELDGHVLKCVKDQNGNHVVQKCIECVQPQSLQFIIDAFKGQVFVLSTH--PYGCRV 184 (351)
T ss_dssp THHHHHHHHH-HHSCHHHHHHHHGGGTTCHHHHHHSTTHHHHHHHHHHHSCGGGTHHHHHHTTTTHHHHHTS--TTHHHH
T ss_pred HhHHHHHHHH-HhCCHHHHHHHHHHhhhhHHHHHHhhhhhHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHhC--cHhHHH
Confidence 9999999999 58889999999999999999999998 99999999996 6889999999999988877765 455444
Q ss_pred hhhhHHHhhhcCCChhhHHHHHHHhCCCCccccccCcChHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHhhCcCchHHHH
Q psy15035 159 LHAVLLDFISHSSDSPDLMEVLEMLAPLPLLPFVHSKAGASVAMHIIWNATNKLKKKIVKELKGHLREVATSEFGHLVLV 238 (816)
Q Consensus 159 vh~vl~ey~~~~~~~~~~~~iie~l~~~~l~~L~~tk~Gs~Vv~~cl~~~~~kdRk~Iik~lk~~v~~La~d~~G~~Vlq 238 (816)
++.++..+++ +++..+++.|.++ +..|+++++||+|+|+||+++++++|+.|++.+++++..|++|+||++|++
T Consensus 185 ----vq~~le~~~~-~~~~~ii~~l~~~-~~~L~~d~~Gn~ViQ~~l~~~~~~~~~~i~~~l~~~~~~Ls~~k~gs~Vve 258 (351)
T 3gvo_A 185 ----IQRILEHCTA-EQTLPILEELHQH-TEQLVQDQYGNYVIQHVLEHGRPEDKSKIVSEIRGKVLALSQHKFASNVVE 258 (351)
T ss_dssp ----HHHHHHHSCH-HHHHHHHHHHHTT-HHHHHTSTTHHHHHHHHHHHSCHHHHHHHHHTTTTCHHHHHTSTTHHHHHH
T ss_pred ----HHHHHHHCCH-HHHHHHHHHHhhh-HHhcCCCchHHHHHHHHHHhCchhhHHHHHHHHHHHHHHHhcCcHHHHHHH
Confidence 4555566777 9999999999999 999999999999999999999999999999999999999999999999999
Q ss_pred HHHccCCchHHHHHHHHHHHHH-------hHHhHhcChhhHHHHHHhhccCCCCCcCHHHHHhhccCCccccCCCCHHHH
Q psy15035 239 TLLDNVDDTLLLKKALLPELLA-------EVVPLANHEYGRKVIAHLVSWCDPGFFHPTCIAHVKSGDEFSTSKKDRDIR 311 (816)
Q Consensus 239 ~~l~~~DDt~l~~k~Iv~eL~~-------~l~~L~~d~yG~~Vl~~Ll~~~~~~~f~~~i~~~L~~~~~~~~sKKd~~~R 311 (816)
+||++.++. .++.|+.+|.. .+..|+.|+||+|||+++|+..+ ++.
T Consensus 259 k~l~~~~~~--~r~~ii~el~~~~~~~~~~l~~l~~d~ygnyViq~~L~~~~------------------------~~~- 311 (351)
T 3gvo_A 259 KCVTHASRA--ERALLIDEVCCQNDGPHSALYTMMKDQYANYVVQKMIDMAE------------------------PAQ- 311 (351)
T ss_dssp HHHHHSCHH--HHHHHHHHHHSCEETTEEHHHHHHHSTTHHHHHHHHHHHCC------------------------HHH-
T ss_pred HHHHhCCHH--HHHHHHHHHhcccCCCChHHHHccCCcchHHHHHHHHHhCC------------------------HHH-
Confidence 999998765 47889999986 79999999999999999997543 222
Q ss_pred HHHHHHhhchhHHHHHHhcHHHHHccCChhHHHHHHHhc
Q psy15035 312 NKEILEAVSEPLLSSIAKDADFWLSTGSVAMVTAVILKN 350 (816)
Q Consensus 312 r~EL~~~~~~~Ll~~i~~~~~~ll~d~~g~~vv~~iL~~ 350 (816)
|+. +++.+..++..|..+++|..|+..+.+.
T Consensus 312 r~~--------i~~~i~~~~~~L~~~~~g~~i~~kl~~~ 342 (351)
T 3gvo_A 312 RKI--------IMHKIRPHITTLRKYTYGKHILAKLEKY 342 (351)
T ss_dssp HHH--------HHHHHGGGHHHHTTSTTTHHHHHHHHHH
T ss_pred HHH--------HHHHHHHHHHHHhcCCchHHHHHHHHHH
Confidence 233 4444555678888999999998776554
No 2
>3k49_A MRNA-binding protein PUF3; PUF3, pumilio, RNA binding, mitochondrial mRNA,, membrane, mitochondrion; HET: CIT; 2.50A {Saccharomyces cerevisiae} SCOP: a.118.1.0 PDB: 3k4e_A
Probab=100.00 E-value=1e-46 Score=420.10 Aligned_cols=304 Identities=14% Similarity=0.185 Sum_probs=253.7
Q ss_pred CccccccCCchHHHHhhhhcCCHHHHHHHHHHHhHHHHHhhcCcchhHHHHHHHhcCCHHHHHHHHHHHhHHHHHHhhCc
Q psy15035 1 MGQIVFSHDMSRIIQWLLKLSSPQMKKDIVKELLPFTVAMIKSKYSNALVKHMLKSGDENTKNEIIKALQPHVVTLLSHT 80 (816)
Q Consensus 1 i~~l~~~hd~sRvIQ~~lk~gt~eqR~~I~~EL~~~i~eL~~d~yg~~vVQKlL~~gs~eqr~~Ii~e~~g~v~~L~~h~ 80 (816)
+.++|++|+|||+||++|+++++++|+.||+||.|++.+||+|+||||||||+|++|++++|..|+++|+|++.+|+.|+
T Consensus 33 i~~l~~d~~gsR~lQ~~l~~~~~~~~~~I~~el~~~~~~L~~d~~gn~vvQkll~~~~~~~~~~i~~~~~g~~~~L~~~~ 112 (369)
T 3k49_A 33 SLEFCKDQHGSRFIQRELATSPASEKEVIFNEIRDDAIELSNDVFGNYVIQKFFEFGSKIQKNTLVDQFKGNMKQLSLQM 112 (369)
T ss_dssp HHHHHTSHHHHHHHHHHHTTCCHHHHHHHHHHHGGGHHHHHHSTTTHHHHHHHHHHCCHHHHHHHHHHHTTCHHHHHHST
T ss_pred HHHHHcCCcchHHHHHHhccCCHHHHHHHHHHHHHHHHHHhhCcccccHHHHHHHhCCHHHHHHHHHHHhhhHHHHhcCh
Confidence 35789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CchHHHHHHHHhcCCHHHHHHHHHHHhcCcceeeccCCcchhHHhhcCChhHHHHHHHHHHHHHHHhhhhhcccCCcchh
Q psy15035 81 TASPVLMYAHDQVASPAQKLAMRQELYGGLYESTGDKKINCLGDIFEQSPEMKTAILSVTKKTILKSLQKTQVTGSALLH 160 (816)
Q Consensus 81 ~G~~VVqk~~~~~at~eQr~~Li~e~yg~~~~l~kd~~~~~l~~ile~~pekk~~Il~~l~~~l~~lv~K~~~~~~~ivh 160 (816)
|||+|||++| ++++++|+..|++||+++.+.|++| ..|+++++
T Consensus 113 ~G~rVlQk~l-e~~~~~q~~~ii~el~~~~~~L~~d------------------------------------~~Gn~ViQ 155 (369)
T 3k49_A 113 YACRVIQKAL-EYIDSNQRIELVLELSDSVLQMIKD------------------------------------QNGNHVIQ 155 (369)
T ss_dssp THHHHHHHHH-HHSCHHHHHHHHGGGTTCHHHHHHS------------------------------------TTHHHHHH
T ss_pred hhHHHHHHHH-HhCCHHHHHHHHHHHHHHHHHHhcC------------------------------------cccchHHH
Confidence 9999999999 6999999999999999987766665 44455555
Q ss_pred hhHHHhhhcCCChhhHHHHHHHhCCCCccccccCcChHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHhhCcCchHHHHHH
Q psy15035 161 AVLLDFISHSSDSPDLMEVLEMLAPLPLLPFVHSKAGASVAMHIIWNATNKLKKKIVKELKGHLREVATSEFGHLVLVTL 240 (816)
Q Consensus 161 ~vl~ey~~~~~~~~~~~~iie~l~~~~l~~L~~tk~Gs~Vv~~cl~~~~~kdRk~Iik~lk~~v~~La~d~~G~~Vlq~~ 240 (816)
+++ ..+++ +.+..|++.+.++ +.+|+++++||+|+++|++++++++|+.|++++++++..|++|+|||||||++
T Consensus 156 ~~l----~~~~~-~~~~~i~~~~~~~-~~~ls~~~~Gs~Vvq~~l~~~~~~~~~~i~~~l~~~~~~L~~d~~GnyViQ~~ 229 (369)
T 3k49_A 156 KAI----ETIPI-EKLPFILSSLTGH-IYHLSTHSYGCRVIQRLLEFGSSEDQESILNELKDFIPYLIQDQYGNYVIQYV 229 (369)
T ss_dssp HHH----HHSCG-GGCHHHHHHHTTT-HHHHHTSTTHHHHHHHHHHHSCHHHHHHHHHTTTTCHHHHHHSTTHHHHHHHH
T ss_pred HHH----HhCCH-HHHHHHHHHHHHH-HHHHhCCCccCcHHHHHHHhCCHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHH
Confidence 443 22445 7788899999999 99999999999999999999999999999999999999999999999999999
Q ss_pred HccCCchHH----HHHHHHHHHHHhHHhHhcChhhHHHHHHhhccCCCCCcCHHHHHhhccCCccccCCCCHHHHHHHHH
Q psy15035 241 LDNVDDTLL----LKKALLPELLAEVVPLANHEYGRKVIAHLVSWCDPGFFHPTCIAHVKSGDEFSTSKKDRDIRNKEIL 316 (816)
Q Consensus 241 l~~~DDt~l----~~k~Iv~eL~~~l~~L~~d~yG~~Vl~~Ll~~~~~~~f~~~i~~~L~~~~~~~~sKKd~~~Rr~EL~ 316 (816)
|+..+++.. .++.|++.+.+++.+|+.++||++|++++|...++... ..++.+..... ++. .
T Consensus 230 l~~~~~~~~~~~~~~~~i~~~l~~~~~~Ls~~k~gS~Vvek~l~~~~~~~r----~~ii~~l~~~~-----~~~-----~ 295 (369)
T 3k49_A 230 LQQDQFTNKEMVDIKQEIIETVANNVVEYSKHKFASNVVEKSILYGSKNQK----DLIISKILPRD-----KNH-----A 295 (369)
T ss_dssp HTCCTTSCHHHHHHHHHHHHHHHTTHHHHHTSTTHHHHHHHHHHHSCHHHH----HHHHTTTSCSS-----HHH-----H
T ss_pred HhcCCchhhhhHhHHHHHHHHHHHHHHHHHhhhHhhHHHHHHHHhCCHHHH----HHHHHHHhccc-----ccc-----c
Confidence 999988752 46789999999999999999999999999976542111 11111111000 000 0
Q ss_pred HhhchhHHHHHHhcHHHHHccCChhHHHHHHHhccCCcChHHHHHHHHHHH
Q psy15035 317 EAVSEPLLSSIAKDADFWLSTGSVAMVTAVILKNALGPGLKEAFDSVANVI 367 (816)
Q Consensus 317 ~~~~~~Ll~~i~~~~~~ll~d~~g~~vv~~iL~~~~g~~~~~~~~aia~~~ 367 (816)
....+ .+.+..|+.|+|||||||.+|..+.++.+..++++|.+.+
T Consensus 296 ~~~~~------~~~l~~L~~D~~gNyViq~~l~~~~~~~~~~l~~~i~p~l 340 (369)
T 3k49_A 296 LNLED------DSPMILMIKDQFANYVIQKLVNVSEGEGKKLIVIAIRAYL 340 (369)
T ss_dssp HTCCT------TSHHHHHHTSTTHHHHHHHHHHHCCHHHHHHHHHHHHHHH
T ss_pred ccccc------ccHHHHHHhCcchHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 00000 1135679999999999999999999887777777776555
No 3
>3bwt_A Protein PUF4; pumilio, RNA binding, HO endonuclease, transcription, RNA binding protein; 2.69A {Saccharomyces cerevisiae} PDB: 4dzs_A 3bx2_A 3bx3_A
Probab=100.00 E-value=3.5e-45 Score=402.05 Aligned_cols=292 Identities=13% Similarity=0.191 Sum_probs=244.1
Q ss_pred CccccccCCchHHHHhhhhcCCHHHHHHHHHHHhHHHHHhhcCcchhHHHHHHHhcCCHHHHHHHHHHHhHHHHHHhhCc
Q psy15035 1 MGQIVFSHDMSRIIQWLLKLSSPQMKKDIVKELLPFTVAMIKSKYSNALVKHMLKSGDENTKNEIIKALQPHVVTLLSHT 80 (816)
Q Consensus 1 i~~l~~~hd~sRvIQ~~lk~gt~eqR~~I~~EL~~~i~eL~~d~yg~~vVQKlL~~gs~eqr~~Ii~e~~g~v~~L~~h~ 80 (816)
+.++|++|+|||+||++|+++++++|+.||+|+.|++++||+|+||||||||+|+++++++|..|++++.|++++|+.|+
T Consensus 15 i~~l~~~q~gsr~iQ~~l~~~~~~~~~~i~~el~~~~~~L~~d~~gn~vvQkll~~~~~~~~~~i~~~~~~~~~~l~~~~ 94 (333)
T 3bwt_A 15 IHSLCKDQHGCRFLQKQLDILGSKAADAIFEETKDYTVELMTDSFGNYLIQKLLEEVTTEQRIVLTKISSPHFVEISLNP 94 (333)
T ss_dssp HHHHTSSHHHHHHHHHHHHHSCHHHHHHHHHHHGGGHHHHHTSTTHHHHHHHHHHHSCHHHHHHHHHHHGGGHHHHHHST
T ss_pred HHHHhcCcHhhHHHHHHHccCCHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhCCHHHHHHHHHHHHhHHHHHHhcc
Confidence 35789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CchHHHHHHHHhcCCHHHHHHHHHHHhcCcceeeccCCcchhHHhhcCChhHHHHHHHHHHHHHHHhhhhhcccCCcchh
Q psy15035 81 TASPVLMYAHDQVASPAQKLAMRQELYGGLYESTGDKKINCLGDIFEQSPEMKTAILSVTKKTILKSLQKTQVTGSALLH 160 (816)
Q Consensus 81 ~G~~VVqk~~~~~at~eQr~~Li~e~yg~~~~l~kd~~~~~l~~ile~~pekk~~Il~~l~~~l~~lv~K~~~~~~~ivh 160 (816)
|||||||++++...+++|+..|++||+++.+.|++|. +|++++|
T Consensus 95 ~G~rviQ~~l~~~~~~~~~~~i~~el~~~~~~L~~d~------------------------------------~gn~Viq 138 (333)
T 3bwt_A 95 HGTRALQKLIECIKTDEEAQIVVDSLRPYTVQLSKDL------------------------------------NGNHVIQ 138 (333)
T ss_dssp THHHHHHHHHHHCCSHHHHHHHHHHHGGGHHHHHTST------------------------------------THHHHHH
T ss_pred cccHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHhcCC------------------------------------cccHHHH
Confidence 9999999999766688899999999988877666654 4444444
Q ss_pred hhHHHhhhcCCChhhHHHHHHHhCCCCccccccCcChHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHhhCcCchHHHHHH
Q psy15035 161 AVLLDFISHSSDSPDLMEVLEMLAPLPLLPFVHSKAGASVAMHIIWNATNKLKKKIVKELKGHLREVATSEFGHLVLVTL 240 (816)
Q Consensus 161 ~vl~ey~~~~~~~~~~~~iie~l~~~~l~~L~~tk~Gs~Vv~~cl~~~~~kdRk~Iik~lk~~v~~La~d~~G~~Vlq~~ 240 (816)
+++ ...++ +++..+++.+.++ +.+|+++++||+|+++|+.++++++|+.|++++.+++..|++|+|||||+|++
T Consensus 139 k~l----~~~~~-~~~~~i~~~l~~~-~~~l~~~~~Gs~Vvq~~l~~~~~~~~~~l~~el~~~~~~L~~d~~GnyVvQ~~ 212 (333)
T 3bwt_A 139 KCL----QRLKP-ENFQFIFDAISDS-CIDIATHRHGCCVLQRCLDHGTTEQCDNLCDKLLALVDKLTLDPFGNYVVQYI 212 (333)
T ss_dssp HHH----HHSCH-HHHHHHHHHHHHS-HHHHHTSTTHHHHHHHHHHHCCHHHHHHHHHHHHTTHHHHHTSTTHHHHHHHH
T ss_pred HHH----HHCCH-HHHHHHHHHHHHH-HHHHhcCchhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhcCChHHHHHHHH
Confidence 443 22344 7778888888888 99999999999999999999999999999999999999999999999999999
Q ss_pred HccCCchH--HHHHHHHHHHHHhHHhHhcChhhHHHHHHhhccCCCCCcCHHHHHhhccCCccccCCCCHHHHHHHHHHh
Q psy15035 241 LDNVDDTL--LLKKALLPELLAEVVPLANHEYGRKVIAHLVSWCDPGFFHPTCIAHVKSGDEFSTSKKDRDIRNKEILEA 318 (816)
Q Consensus 241 l~~~DDt~--l~~k~Iv~eL~~~l~~L~~d~yG~~Vl~~Ll~~~~~~~f~~~i~~~L~~~~~~~~sKKd~~~Rr~EL~~~ 318 (816)
|+..+++. ..++.|+..|.+++.+|+.++||++|++++|...+ . .+....|++..
T Consensus 213 L~~~~~~~~~~~~~~ii~~l~~~~~~Ls~~k~gs~Vvek~l~~~~-------~----------------~~~ii~ell~~ 269 (333)
T 3bwt_A 213 ITKEAEKNKYDYTHKIVHLLKPRAIELSIHKFGSNVIEKILKTAI-------V----------------SEPMILEILNN 269 (333)
T ss_dssp HHHHHHHTCCSHHHHHHHHHGGGHHHHHTSTTHHHHHHHHHTSHH-------H----------------HHHHHHHHHHT
T ss_pred HHhCCccccchhHHHHHHHHHHHHHHHHcccHHHHHHHHHHcccc-------h----------------hHHHHHHHHhc
Confidence 99876543 23568999999999999999999999999996411 0 01112233221
Q ss_pred hchhHHHHHHhcHHHHHccCChhHHHHHHHhccCCcChHHHHHHHHH
Q psy15035 319 VSEPLLSSIAKDADFWLSTGSVAMVTAVILKNALGPGLKEAFDSVAN 365 (816)
Q Consensus 319 ~~~~Ll~~i~~~~~~ll~d~~g~~vv~~iL~~~~g~~~~~~~~aia~ 365 (816)
. ..+++..|+.|+|||||||.+|..+.+.. ....+.+++
T Consensus 270 ~-------~~~~l~~L~~d~~gnyViq~~l~~~~~~~-~~~~~~l~~ 308 (333)
T 3bwt_A 270 G-------GETGIQSLLNDSYGNYVLQTALDISHKQN-DYLYKRLSE 308 (333)
T ss_dssp T-------HHHHHHHHHTSTTHHHHHHHHHHHHHHHC-HHHHHHHHH
T ss_pred c-------CchHHHHHHcCChHHHHHHHHHHhccCcc-HHHHHHHHH
Confidence 1 13467889999999999999999876542 233444443
No 4
>3k62_A FEM-3 mRNA-binding factor 2; FBF, FEM-3 binding factor, PUF, RNA-binding specificity, base flipping, base stacking; 1.90A {Caenorhabditis elegans} PDB: 3k5y_A 3k5z_A 3k61_A 3k5q_A 3k64_A 3qg9_A 3v6y_A 3v74_A 3qgc_A 3qgb_A
Probab=100.00 E-value=9.4e-42 Score=383.92 Aligned_cols=323 Identities=12% Similarity=0.141 Sum_probs=264.5
Q ss_pred CccccccCCchHHHHhhhhcC-CHHHHHHHHHHHhHH---HHHhhcCcchhHHHHHHHhcCCH-------HHHHHHHHHH
Q psy15035 1 MGQIVFSHDMSRIIQWLLKLS-SPQMKKDIVKELLPF---TVAMIKSKYSNALVKHMLKSGDE-------NTKNEIIKAL 69 (816)
Q Consensus 1 i~~l~~~hd~sRvIQ~~lk~g-t~eqR~~I~~EL~~~---i~eL~~d~yg~~vVQKlL~~gs~-------eqr~~Ii~e~ 69 (816)
|+++|++|+|||+||++|+++ ++++|+.||+||.++ +.+||+|+||||||||||+||++ ++|..|++.+
T Consensus 31 i~~la~Dq~GsR~lQ~~l~~~~~~e~~~~If~el~~~~~~~~~L~~d~fGNyvvQKlle~~~~~~~~~~~~q~~~i~~~l 110 (412)
T 3k62_A 31 LMKFAVDKTGCQFLEKAVKGSLTSYQKFQLFEQVIGRKDDFLKLSTNIFGNYLVQSVIGISLATNDDGYTKRQEKLKNFI 110 (412)
T ss_dssp HHHHHTSHHHHHHHHHHTTSCCCHHHHHHHHHHHSSSHHHHHHHHTSTTHHHHHHHHHHHHHHCCSTTHHHHHHHHHHHH
T ss_pred cHHHhcCChhHHHHHHHhccCCCHHHHHHHHHHHHhhhhHHHHHHhCcHHHHHHHHHHHhCCcccccccHHHHHHHHHHH
Confidence 368999999999999999998 999999999999875 89999999999999999999999 9999999999
Q ss_pred hHHHHHHhhCcCchHHHHHHHHhcCCHHHHHHHHHHH--hcCcceeeccC-CcchhHHhhcCC-hhHHHHHHHHHH--HH
Q psy15035 70 QPHVVTLLSHTTASPVLMYAHDQVASPAQKLAMRQEL--YGGLYESTGDK-KINCLGDIFEQS-PEMKTAILSVTK--KT 143 (816)
Q Consensus 70 ~g~v~~L~~h~~G~~VVqk~~~~~at~eQr~~Li~e~--yg~~~~l~kd~-~~~~l~~ile~~-pekk~~Il~~l~--~~ 143 (816)
+||+++|+.|+|||||||+++ ++++++|+..|++|+ .++...|++|. |++++|++++.. |+.+..|++.+. ++
T Consensus 111 ~g~v~~L~~~~~GsrvvQk~l-e~~~~~~~~~iv~eL~~~~~i~~L~~D~~GNhVIQK~Le~~~~~~~~~I~~~~~~~~~ 189 (412)
T 3k62_A 111 SSQMTDMCLDKFACRVIQSSL-QNMDLSLACKLVQALPRDARLIAICVDQNANHVIQKVVAVIPLKNWEFIVDFVATPEH 189 (412)
T ss_dssp HHTHHHHHHSTTHHHHHHHHH-HHSCHHHHHHHHHTSCCSHHHHHHHHCTTTHHHHHHHHHHSCHHHHHHHHHHHHSHHH
T ss_pred HHHHHHHHcChhhhHHHHHHH-HhCCHHHHHHHHHHHhccccHHHHHhCccccHHHHHHHHhCCHHHHHHHHHHHhcchh
Confidence 999999999999999999999 599999999999999 47788999998 999999999994 678999999998 47
Q ss_pred HHHhhhhhcccCCcchhhhHHHhhhcCCCh-----------hhHH----HHHHHhCCCCccccccCcChHHHHHHHHhhc
Q psy15035 144 ILKSLQKTQVTGSALLHAVLLDFISHSSDS-----------PDLM----EVLEMLAPLPLLPFVHSKAGASVAMHIIWNA 208 (816)
Q Consensus 144 l~~lv~K~~~~~~~ivh~vl~ey~~~~~~~-----------~~~~----~iie~l~~~~l~~L~~tk~Gs~Vv~~cl~~~ 208 (816)
+..+... .+|+.+++++ ++.+++. +++. ++++.+.++ +..|+++++||+|+|++|+++
T Consensus 190 ~~~la~h--~~GcrVvQk~----le~~~~~~~~~~~~~~~~~qr~~il~~L~~~I~~~-~~~L~~dq~GNyViQ~iL~~g 262 (412)
T 3k62_A 190 LRQICSD--KYGCRVVQTI----IEKLTADSMNVDLTSAAQNLRERALQRLMTSVTNR-CQELATNEYANYIIQHIVSND 262 (412)
T ss_dssp HHHHHTS--HHHHHHHHHH----HHHTSCSGGGTTSCHHHHHHHHHHHHHHHHHHHHT-HHHHHHSTTTHHHHHHHHHCG
T ss_pred HHHHhcC--cchHHHHHHH----HHhcCcccccchhhhhhHHHHHHHHHHHHHHHHHH-HHHHhhCccccHHHHHHHhcC
Confidence 7777655 5665555555 4555431 3443 567788888 999999999999999999999
Q ss_pred CHHH-HHHHHH-HHHHHHHHHhhCcCchHHHHHHHccCCchHHHHHHHHHHHHH-----------hHHhHhcChhhHHHH
Q psy15035 209 TNKL-KKKIVK-ELKGHLREVATSEFGHLVLVTLLDNVDDTLLLKKALLPELLA-----------EVVPLANHEYGRKVI 275 (816)
Q Consensus 209 ~~kd-Rk~Iik-~lk~~v~~La~d~~G~~Vlq~~l~~~DDt~l~~k~Iv~eL~~-----------~l~~L~~d~yG~~Vl 275 (816)
++++ |..|+. .+++++..|++|+||++|+++||++.+++ .++.|+.||.+ .+..|+.|+||+|||
T Consensus 263 ~~~~~r~~ii~~~l~~~~~~LS~~KfgSnVVek~L~~~~~~--~r~~ii~ei~~~~~~~~~~~~~~l~~L~~DqyGNYVi 340 (412)
T 3k62_A 263 DLAVYRECIIEKCLMRNLLSLSQEKFASHVVEKAFLHAPLE--LLAEMMDEIFDGYIPHPDTGKDALDIMMFHQFGNYVV 340 (412)
T ss_dssp GGHHHHHHHHHHHTTTCHHHHHTSTTHHHHHHHHHHHCCHH--HHHHHHHHHHHSSCCCTTTCCCHHHHHHHSTTHHHHH
T ss_pred CchhHHHHHHHHHHHHHHHHHhcccHhHHHHHHHHHhCCHH--HHHHHHHHHHhhccCCccccchHHHHHhcCCchHHHH
Confidence 9875 888887 59999999999999999999999998766 47789999985 388999999999999
Q ss_pred HHhhccCCCCCcCHHHHHhhccCCccccCCCCH-HHHHHHHHHhhchhHHHHHHhcHHHHHccCChhHHHHHH
Q psy15035 276 AHLVSWCDPGFFHPTCIAHVKSGDEFSTSKKDR-DIRNKEILEAVSEPLLSSIAKDADFWLSTGSVAMVTAVI 347 (816)
Q Consensus 276 ~~Ll~~~~~~~f~~~i~~~L~~~~~~~~sKKd~-~~Rr~EL~~~~~~~Ll~~i~~~~~~ll~d~~g~~vv~~i 347 (816)
+++|+-.+.. +. +.. ..+=+. +. .+.++.....|...+..+...|-+.++|.-|+..+
T Consensus 341 Q~~L~~~~~~---------~~-~~r--~~~~~~~~~--~~~~~~~~~~l~~~i~~~~~~L~~~~~Gk~i~~~l 399 (412)
T 3k62_A 341 QCMLTICCDA---------VS-GRR--QTKEGGYDH--AISFQDWLKKLHSRVTKERHRLSRFSSGKKMIETL 399 (412)
T ss_dssp HHHHHHHHHH---------HT-TSS--CCEETTEET--HHHHHHHHHHHHHHHHHTHHHHTTSHHHHHHHHHH
T ss_pred HHHHHHcccc---------cc-chh--hccccchhh--hhhhHHHHHHHHHHHHHHHHHhccCCCccHHHHHH
Confidence 9999753210 00 000 000000 00 11223333457777778888898899999887554
No 5
>3v71_A PUF (pumilio/FBF) domain-containing protein 7, CO transcript evidence; PUF repeats, RNA binding protein-RNA complex; HET: EPE; 2.90A {Caenorhabditis elegans}
Probab=100.00 E-value=1.7e-41 Score=379.03 Aligned_cols=325 Identities=14% Similarity=0.215 Sum_probs=266.7
Q ss_pred CccccccCCchHHHHhhhhcCCHHH-HHHHHHHHh---HHHHHhhcCcchhHHHHHHHhcCCHHHHHHHHHH-HhHHHHH
Q psy15035 1 MGQIVFSHDMSRIIQWLLKLSSPQM-KKDIVKELL---PFTVAMIKSKYSNALVKHMLKSGDENTKNEIIKA-LQPHVVT 75 (816)
Q Consensus 1 i~~l~~~hd~sRvIQ~~lk~gt~eq-R~~I~~EL~---~~i~eL~~d~yg~~vVQKlL~~gs~eqr~~Ii~e-~~g~v~~ 75 (816)
|.++|++|+|||+||++|+++++++ |+.||+||. +++++||+|+||||||||+|+||++++|..|+.+ +.|++++
T Consensus 22 i~~~a~Dq~Gsr~lQ~~l~~~~~~~~~~~if~~l~e~~~~~~~L~~d~~Gn~vvQklle~~~~~~~~~li~~~l~g~v~~ 101 (382)
T 3v71_A 22 LIDFAIDPSGVKFLEANYPLDSEDQIRKAVFEKFTESTTLFVGLCHSRNGNFIVQKLVELATPAEQRELLRQMIDGGLLA 101 (382)
T ss_dssp HHHHHHSHHHHHHHHHTSCSCTTCHHHHHHHHHHHSCHHHHHHHHSSTTHHHHHHHHHHTCCHHHHHHHHHHHHHTCHHH
T ss_pred EehhccCCcccHHHHHHcccCChHHHHHHHHHHHHhhHHHHHHHhcCcHHHHHHHHHHHhCCHHHHHHHHHHHhcchHHH
Confidence 3678999999999999999998765 899999985 7999999999999999999999999999999987 5899999
Q ss_pred HhhCcCchHHHHHHHHhcCCHHHHHHHHHHHhc-CcceeeccC-CcchhHHhhcCC-hhHHHHHHHHHH--HHHHHhhhh
Q psy15035 76 LLSHTTASPVLMYAHDQVASPAQKLAMRQELYG-GLYESTGDK-KINCLGDIFEQS-PEMKTAILSVTK--KTILKSLQK 150 (816)
Q Consensus 76 L~~h~~G~~VVqk~~~~~at~eQr~~Li~e~yg-~~~~l~kd~-~~~~l~~ile~~-pekk~~Il~~l~--~~l~~lv~K 150 (816)
|+.|+|||||||+++ ++++.+|+..|+.|+.+ +.+.+++|. |++++|++++.. |+.+..|++.+. +++..+...
T Consensus 102 Ls~~~~G~rvvQk~i-e~~~~~~~~~li~eL~~~~~~~L~~D~~GnhVIQk~le~~~~~~~~~Ii~~~~~~~~~~~la~h 180 (382)
T 3v71_A 102 MCKDKFACRVVQLAL-QKFDHSNVFQLIQELSTFDLAAMCTDQISIHVIQRVVKQLPVDMWTFFVHFLSSGDSLMAVCQD 180 (382)
T ss_dssp HHTSTTHHHHHHHHH-HHSCHHHHHHHHHHHHTSCHHHHHHSTTTHHHHHHHHTTSCTTTSHHHHHHHHSTTHHHHHHHS
T ss_pred HHhCccchHHHHHHH-HHCCHHHHHHHHHHhcccchHHHhcCcccccHHHHHHHHCCHHHHHHHHHHHhcccchHhHhcC
Confidence 999999999999999 58899999999999999 789999998 999999999995 578999999997 588888776
Q ss_pred hcccCCcchhhhHHHhhhcCCChh----------hHHHHHHHhCCCCccccccCcChHHHHHHHHhhcCH--HHHHHHHH
Q psy15035 151 TQVTGSALLHAVLLDFISHSSDSP----------DLMEVLEMLAPLPLLPFVHSKAGASVAMHIIWNATN--KLKKKIVK 218 (816)
Q Consensus 151 ~~~~~~~ivh~vl~ey~~~~~~~~----------~~~~iie~l~~~~l~~L~~tk~Gs~Vv~~cl~~~~~--kdRk~Iik 218 (816)
.+|+.++++++ ..+++.. ...++++.+.++ +..|+++++||+|+|++|+++++ +.|..|+.
T Consensus 181 --~~Gc~VlQ~~l----e~~~~~~k~~~~~~r~~~l~~l~~~I~~~-~~~L~~d~~GNyVIQ~iL~~~~~~e~~r~~ii~ 253 (382)
T 3v71_A 181 --KYGCRLVQQVI----DRLAENPKLPCFKFRIQLLHSLMTCIVRN-CYRLSSNEFANYVIQYVIKSSGIMEMYRDTIID 253 (382)
T ss_dssp --TTHHHHHHHHH----HHHTCCSSSTTHHHHHHHHHHHHHHHHTT-HHHHHTSTTTHHHHHHHHTCCSTHHHHHHHHHH
T ss_pred --chhhHHHHHHH----HhCCHhhhhhhhhHHHHHHHHHHHHHHHH-HHHHhhCccccHHHHHHHhcCCCcHHHHHHHHH
Confidence 67777777765 3343311 134678888899 99999999999999999999874 56999996
Q ss_pred -HHHHHHHHHhhCcCchHHHHHHHccCCchHHHHHHHHHHHHH-----------hHHhHhcChhhHHHHHHhhccCCCCC
Q psy15035 219 -ELKGHLREVATSEFGHLVLVTLLDNVDDTLLLKKALLPELLA-----------EVVPLANHEYGRKVIAHLVSWCDPGF 286 (816)
Q Consensus 219 -~lk~~v~~La~d~~G~~Vlq~~l~~~DDt~l~~k~Iv~eL~~-----------~l~~L~~d~yG~~Vl~~Ll~~~~~~~ 286 (816)
.+++++..|++|+||++|+++||...++. .++.|+.+|.+ .+..|+.|+||++||+++|+..++..
T Consensus 254 ~~l~~~~~~Ls~~k~gS~Vvek~l~~~~~~--~r~~ii~el~~~~~~~~~~~~~~l~~l~~D~ygNyVvQ~~L~~~~~~~ 331 (382)
T 3v71_A 254 KCLLRNLLSMSQDKYASHVIEGAFLFAPPA--LLHEMMEEIFSGYVKDVESNRDALDILLFHQYGNYVVQQMISICTAAL 331 (382)
T ss_dssp HTTTTCHHHHTTSTTHHHHHHHHHHHCCHH--HHHHHHHHHCC--CCCSSSCCCHHHHHHTCTTHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhcCchHhHHHHHHHHhCCHH--HHHHHHHHHHhhccccccccchHHHHHHCCCCccHHHHHHHHHccccc
Confidence 59999999999999999999999988765 57899999974 78999999999999999997643210
Q ss_pred cCHHHHHhhccCCccccCCC-CHHHHHHHHHHhhchhHHHHHHhcHHHHHccCChhHHHHHHHhc
Q psy15035 287 FHPTCIAHVKSGDEFSTSKK-DRDIRNKEILEAVSEPLLSSIAKDADFWLSTGSVAMVTAVILKN 350 (816)
Q Consensus 287 f~~~i~~~L~~~~~~~~sKK-d~~~Rr~EL~~~~~~~Ll~~i~~~~~~ll~d~~g~~vv~~iL~~ 350 (816)
.+. ..++ .+..|+ ........|.+.+..++..|-+.++|..++..+.+.
T Consensus 332 ---------~~~----~~~~~~~~~~~--~~~~~~~~l~~~i~~~~~~l~~~~~Gk~i~~~l~~~ 381 (382)
T 3v71_A 332 ---------IGK----EERELPPAILL--LYSGWYEKMKQRVLQHASRLERFSSGKKIIDSVMRH 381 (382)
T ss_dssp ---------C---------CCCTTTHH--HHHHHHHHHHHHHHHHHHHHTTSHHHHHHHHHHHHC
T ss_pred ---------ccc----hhcccchhHHh--hhhHHHHHHHHHHHHHHHHhhhCCchHHHHHHHHhc
Confidence 000 0000 112221 122223446667777888899999999998877654
No 6
>3gvo_A Pumilio 2, pumilio homolog 2; RNA-binding, PUF domain, RNA binding protein; HET: DTD; 1.60A {Mus musculus} SCOP: a.118.1.8 PDB: 3gvt_A 3q0q_A 3q0r_A 3q0s_A 1ib2_A 1m8w_A 1m8x_A 1m8y_A 1m8z_A 3q0l_A 3q0m_A 3q0n_A 3q0o_A 3q0p_A 2yjy_A 3bsx_A 3bsb_A 3h3d_X
Probab=100.00 E-value=1.4e-40 Score=368.19 Aligned_cols=300 Identities=13% Similarity=0.221 Sum_probs=260.7
Q ss_pred HHHHHHHhHHHHHhhcCcchhHHHHHHHhcCCHHHHHHHHHHHhHHHHHHhhCcCchHHHHHHHHhcCCHHHHHHHHHHH
Q psy15035 27 KDIVKELLPFTVAMIKSKYSNALVKHMLKSGDENTKNEIIKALQPHVVTLLSHTTASPVLMYAHDQVASPAQKLAMRQEL 106 (816)
Q Consensus 27 ~~I~~EL~~~i~eL~~d~yg~~vVQKlL~~gs~eqr~~Ii~e~~g~v~~L~~h~~G~~VVqk~~~~~at~eQr~~Li~e~ 106 (816)
...++++.|++++|++|++|+|+||++|+++++++|+.|++++.+++.+|+.|+||++|||+++ ++++++||..|++++
T Consensus 18 ~~~l~~~~g~i~~la~dq~gsR~lQ~~l~~~~~~~~~~i~~ei~~~~~~L~~d~~gn~vvQkll-e~~~~~~~~~i~~~i 96 (351)
T 3gvo_A 18 NLQLRDLIGHIVEFSQDQHGSRFIQQKLERATPAERQIVFNEILQAAYQLMTDVFGNYVIQKFF-EFGSLDQKLALATRI 96 (351)
T ss_dssp TCCGGGGTTCHHHHHTSHHHHHHHHHHHHHCCHHHHHHHHHHHGGGHHHHHTSTTHHHHHHHHH-HHCCHHHHHHHHHHH
T ss_pred CcCHHHHHhHHHHHhcCCcchHHHHHHHhhCCHHHHHHHHHHHHHhHHHHHhChhhhHHHHHHH-hhCCHHHHHHHHHHH
Confidence 3457889999999999999999999999999999999999999999999999999999999999 599999999999999
Q ss_pred hcCcceeeccC-CcchhHHhhcC-ChhHHHHHHHHHHHHHHHhhhhhcccCCcchhhhHHHhhhcCCChhhHHHHHHHhC
Q psy15035 107 YGGLYESTGDK-KINCLGDIFEQ-SPEMKTAILSVTKKTILKSLQKTQVTGSALLHAVLLDFISHSSDSPDLMEVLEMLA 184 (816)
Q Consensus 107 yg~~~~l~kd~-~~~~l~~ile~-~pekk~~Il~~l~~~l~~lv~K~~~~~~~ivh~vl~ey~~~~~~~~~~~~iie~l~ 184 (816)
+|+.+.+..|. |++++|++++. .++.+..|++++.+++..++.+ ..|++++++++ ..+++ +.+..|++.+.
T Consensus 97 ~g~~~~l~~~~~G~rvvQk~le~~~~~~~~~i~~el~~~~~~L~~d--~~Gn~ViQk~l----~~~~~-~~~~~i~~~~~ 169 (351)
T 3gvo_A 97 RGHVLPLALQMYGCRVIQKALESISSDQQSEMVKELDGHVLKCVKD--QNGNHVVQKCI----ECVQP-QSLQFIIDAFK 169 (351)
T ss_dssp TTCHHHHHTSTTHHHHHHHHHHHSCHHHHHHHHGGGTTCHHHHHHS--TTHHHHHHHHH----HHSCG-GGTHHHHHHTT
T ss_pred HhhHHHHhhCHHhHHHHHHHHHhCCHHHHHHHHHHhhhhHHHHHHh--hhhhHHHHHHH----HhCCH-HHHHHHHHHHH
Confidence 99999999998 99999999998 5678899999999999999999 78999998876 34666 88999999999
Q ss_pred CCCccccccCcChHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHhhCcCchHHHHHHHccCCchHHHHHHHHHHHHHhHHh
Q psy15035 185 PLPLLPFVHSKAGASVAMHIIWNATNKLKKKIVKELKGHLREVATSEFGHLVLVTLLDNVDDTLLLKKALLPELLAEVVP 264 (816)
Q Consensus 185 ~~~l~~L~~tk~Gs~Vv~~cl~~~~~kdRk~Iik~lk~~v~~La~d~~G~~Vlq~~l~~~DDt~l~~k~Iv~eL~~~l~~ 264 (816)
++ +.+|+.+++||+|+|+||.++++++|+.|++++.+++..|++|+|||||||++|+..+.. .++.|++.+.+++..
T Consensus 170 ~~-~~~ls~~~~G~~Vvq~~le~~~~~~~~~ii~~l~~~~~~L~~d~~Gn~ViQ~~l~~~~~~--~~~~i~~~l~~~~~~ 246 (351)
T 3gvo_A 170 GQ-VFVLSTHPYGCRVIQRILEHCTAEQTLPILEELHQHTEQLVQDQYGNYVIQHVLEHGRPE--DKSKIVSEIRGKVLA 246 (351)
T ss_dssp TT-HHHHHTSTTHHHHHHHHHHHSCHHHHHHHHHHHHTTHHHHHTSTTHHHHHHHHHHHSCHH--HHHHHHHTTTTCHHH
T ss_pred HH-HHHHHhCcHhHHHHHHHHHHCCHHHHHHHHHHHhhhHHhcCCCchHHHHHHHHHHhCchh--hHHHHHHHHHHHHHH
Confidence 99 999999999999999999999999999999999999999999999999999999997654 478899999999999
Q ss_pred HhcChhhHHHHHHhhccCCCCCcCHHHHHhhccCCccccCCCCHHHHHHHHHHhhchhHHHHHHhcHHHHHccCChhHHH
Q psy15035 265 LANHEYGRKVIAHLVSWCDPGFFHPTCIAHVKSGDEFSTSKKDRDIRNKEILEAVSEPLLSSIAKDADFWLSTGSVAMVT 344 (816)
Q Consensus 265 L~~d~yG~~Vl~~Ll~~~~~~~f~~~i~~~L~~~~~~~~sKKd~~~Rr~EL~~~~~~~Ll~~i~~~~~~ll~d~~g~~vv 344 (816)
|+.++||++|++.+|...++ +.|. .|++.+...- +--...+..|+.|+||||||
T Consensus 247 Ls~~k~gs~Vvek~l~~~~~------------------------~~r~-~ii~el~~~~-~~~~~~l~~l~~d~ygnyVi 300 (351)
T 3gvo_A 247 LSQHKFASNVVEKCVTHASR------------------------AERA-LLIDEVCCQN-DGPHSALYTMMKDQYANYVV 300 (351)
T ss_dssp HHTSTTHHHHHHHHHHHSCH------------------------HHHH-HHHHHHHSCE-ETTEEHHHHHHHSTTHHHHH
T ss_pred HhcCcHHHHHHHHHHHhCCH------------------------HHHH-HHHHHHhccc-CCCChHHHHccCCcchHHHH
Confidence 99999999999999975432 1121 1111111000 00012467899999999999
Q ss_pred HHHHhccCCcChHHHHHHH
Q psy15035 345 AVILKNALGPGLKEAFDSV 363 (816)
Q Consensus 345 ~~iL~~~~g~~~~~~~~ai 363 (816)
|.+|..+.++++..+++.|
T Consensus 301 q~~L~~~~~~~r~~i~~~i 319 (351)
T 3gvo_A 301 QKMIDMAEPAQRKIIMHKI 319 (351)
T ss_dssp HHHHHHCCHHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHH
Confidence 9999998877665555555
No 7
>3bwt_A Protein PUF4; pumilio, RNA binding, HO endonuclease, transcription, RNA binding protein; 2.69A {Saccharomyces cerevisiae} PDB: 4dzs_A 3bx2_A 3bx3_A
Probab=100.00 E-value=1.3e-36 Score=333.81 Aligned_cols=269 Identities=15% Similarity=0.180 Sum_probs=244.6
Q ss_pred ccccccCCchHHHHhhhhcCCHHHHHHHHHHHhHHHHHhhcCcchhHHHHHHHhcC-CHHHHHHHHHHHhHHHHHHhhCc
Q psy15035 2 GQIVFSHDMSRIIQWLLKLSSPQMKKDIVKELLPFTVAMIKSKYSNALVKHMLKSG-DENTKNEIIKALQPHVVTLLSHT 80 (816)
Q Consensus 2 ~~l~~~hd~sRvIQ~~lk~gt~eqR~~I~~EL~~~i~eL~~d~yg~~vVQKlL~~g-s~eqr~~Ii~e~~g~v~~L~~h~ 80 (816)
.+++.++.|+-+||++|+++++++|..|++++.|++.+|+.++||++|||++++++ +++++..|+++|++++.+|+.|+
T Consensus 52 ~~L~~d~~gn~vvQkll~~~~~~~~~~i~~~~~~~~~~l~~~~~G~rviQ~~l~~~~~~~~~~~i~~el~~~~~~L~~d~ 131 (333)
T 3bwt_A 52 VELMTDSFGNYLIQKLLEEVTTEQRIVLTKISSPHFVEISLNPHGTRALQKLIECIKTDEEAQIVVDSLRPYTVQLSKDL 131 (333)
T ss_dssp HHHHTSTTHHHHHHHHHHHSCHHHHHHHHHHHGGGHHHHHHSTTHHHHHHHHHHHCCSHHHHHHHHHHHGGGHHHHHTST
T ss_pred HHHhcCcccHHHHHHHHhhCCHHHHHHHHHHHHhHHHHHHhcccccHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHhcCC
Confidence 46889999999999999999999999999999999999999999999999999997 67899999999999999999999
Q ss_pred CchHHHHHHHHhcCCHHHHHHHHHHHhcCcceeeccC-CcchhHHhhcC-ChhHHHHHHHHHHHHHHHhhhhhcccCCcc
Q psy15035 81 TASPVLMYAHDQVASPAQKLAMRQELYGGLYESTGDK-KINCLGDIFEQ-SPEMKTAILSVTKKTILKSLQKTQVTGSAL 158 (816)
Q Consensus 81 ~G~~VVqk~~~~~at~eQr~~Li~e~yg~~~~l~kd~-~~~~l~~ile~-~pekk~~Il~~l~~~l~~lv~K~~~~~~~i 158 (816)
||++|||+++ ++.+++++..|++++.|+...+..+. |+++++++++. .++.+..|++++.+++..++.+ .+|+++
T Consensus 132 ~gn~Viqk~l-~~~~~~~~~~i~~~l~~~~~~l~~~~~Gs~Vvq~~l~~~~~~~~~~l~~el~~~~~~L~~d--~~GnyV 208 (333)
T 3bwt_A 132 NGNHVIQKCL-QRLKPENFQFIFDAISDSCIDIATHRHGCCVLQRCLDHGTTEQCDNLCDKLLALVDKLTLD--PFGNYV 208 (333)
T ss_dssp THHHHHHHHH-HHSCHHHHHHHHHHHHHSHHHHHTSTTHHHHHHHHHHHCCHHHHHHHHHHHHTTHHHHHTS--TTHHHH
T ss_pred cccHHHHHHH-HHCCHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhcC--ChHHHH
Confidence 9999999999 58999999999999999999999888 99999999997 5678999999999999999988 899999
Q ss_pred hhhhHHHhhhc-CCChhhHHHHHHHhCCCCccccccCcChHHHHHHHHhhcCHHHHHHHHHHHH-----HHHHHHhhCcC
Q psy15035 159 LHAVLLDFISH-SSDSPDLMEVLEMLAPLPLLPFVHSKAGASVAMHIIWNATNKLKKKIVKELK-----GHLREVATSEF 232 (816)
Q Consensus 159 vh~vl~ey~~~-~~~~~~~~~iie~l~~~~l~~L~~tk~Gs~Vv~~cl~~~~~kdRk~Iik~lk-----~~v~~La~d~~ 232 (816)
+|+++.- ... ... ..+..+++.++++ +.+|+++++|++|+++|+++++ .|+.|++++. +++..|+.|+|
T Consensus 209 vQ~~L~~-~~~~~~~-~~~~~ii~~l~~~-~~~Ls~~k~gs~Vvek~l~~~~--~~~~ii~ell~~~~~~~l~~L~~d~~ 283 (333)
T 3bwt_A 209 VQYIITK-EAEKNKY-DYTHKIVHLLKPR-AIELSIHKFGSNVIEKILKTAI--VSEPMILEILNNGGETGIQSLLNDSY 283 (333)
T ss_dssp HHHHHHH-HHHHTCC-SHHHHHHHHHGGG-HHHHHTSTTHHHHHHHHHTSHH--HHHHHHHHHHHTTHHHHHHHHHTSTT
T ss_pred HHHHHHh-CCccccc-hhHHHHHHHHHHH-HHHHHcccHHHHHHHHHHcccc--hhHHHHHHHHhccCchHHHHHHcCCh
Confidence 9988742 221 112 3468999999999 9999999999999999999765 4677888865 58999999999
Q ss_pred chHHHHHHHccCCch-HHHHHHHHHHHHHhH-HhHhcChhhHHHHHHh
Q psy15035 233 GHLVLVTLLDNVDDT-LLLKKALLPELLAEV-VPLANHEYGRKVIAHL 278 (816)
Q Consensus 233 G~~Vlq~~l~~~DDt-~l~~k~Iv~eL~~~l-~~L~~d~yG~~Vl~~L 278 (816)
||||||++|+.+||+ ..+++.|+++|.+++ ..|..++||++|+.+|
T Consensus 284 gnyViq~~l~~~~~~~~~~~~~l~~~l~p~l~~~lr~~~~G~~i~~~l 331 (333)
T 3bwt_A 284 GNYVLQTALDISHKQNDYLYKRLSEIVAPLLVGPIRNTPHGKRIIGML 331 (333)
T ss_dssp HHHHHHHHHHHHHHHCHHHHHHHHHHHGGGCCGGGGGSHHHHHHHTTS
T ss_pred HHHHHHHHHHhccCccHHHHHHHHHHHHHhchhhhcCCCCHHHHHHHh
Confidence 999999999999988 467899999999998 8999999999998765
No 8
>3k49_A MRNA-binding protein PUF3; PUF3, pumilio, RNA binding, mitochondrial mRNA,, membrane, mitochondrion; HET: CIT; 2.50A {Saccharomyces cerevisiae} SCOP: a.118.1.0 PDB: 3k4e_A
Probab=100.00 E-value=2.2e-37 Score=344.81 Aligned_cols=267 Identities=17% Similarity=0.206 Sum_probs=244.2
Q ss_pred ccccccCCchHHHHhhhhcCCHHHHHHHHHHHhHHHHHhhcCcchhHHHHHHHhcCCHHHHHHHHHHHhHHHHHHhhCcC
Q psy15035 2 GQIVFSHDMSRIIQWLLKLSSPQMKKDIVKELLPFTVAMIKSKYSNALVKHMLKSGDENTKNEIIKALQPHVVTLLSHTT 81 (816)
Q Consensus 2 ~~l~~~hd~sRvIQ~~lk~gt~eqR~~I~~EL~~~i~eL~~d~yg~~vVQKlL~~gs~eqr~~Ii~e~~g~v~~L~~h~~ 81 (816)
.+++.++.|+.|||++|++|++++|..|++++.|++.+|+.++||++||||++++++++|+..|+.++++++..|+.|+|
T Consensus 70 ~~L~~d~~gn~vvQkll~~~~~~~~~~i~~~~~g~~~~L~~~~~G~rVlQk~le~~~~~q~~~ii~el~~~~~~L~~d~~ 149 (369)
T 3k49_A 70 IELSNDVFGNYVIQKFFEFGSKIQKNTLVDQFKGNMKQLSLQMYACRVIQKALEYIDSNQRIELVLELSDSVLQMIKDQN 149 (369)
T ss_dssp HHHHHSTTTHHHHHHHHHHCCHHHHHHHHHHHTTCHHHHHHSTTHHHHHHHHHHHSCHHHHHHHHGGGTTCHHHHHHSTT
T ss_pred HHHhhCcccccHHHHHHHhCCHHHHHHHHHHHhhhHHHHhcChhhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhcCcc
Confidence 46889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chHHHHHHHHhcCCHHHHHHHHHHHhcCcceeeccC-CcchhHHhhcC-ChhHHHHHHHHHHHHHHHhhhhhcccCCcch
Q psy15035 82 ASPVLMYAHDQVASPAQKLAMRQELYGGLYESTGDK-KINCLGDIFEQ-SPEMKTAILSVTKKTILKSLQKTQVTGSALL 159 (816)
Q Consensus 82 G~~VVqk~~~~~at~eQr~~Li~e~yg~~~~l~kd~-~~~~l~~ile~-~pekk~~Il~~l~~~l~~lv~K~~~~~~~iv 159 (816)
|++|||+++ ++++++++..|+++|.|+...+..+. |+++++++++. .++.+..|++++.+.+..++.+ .+|++++
T Consensus 150 Gn~ViQ~~l-~~~~~~~~~~i~~~~~~~~~~ls~~~~Gs~Vvq~~l~~~~~~~~~~i~~~l~~~~~~L~~d--~~GnyVi 226 (369)
T 3k49_A 150 GNHVIQKAI-ETIPIEKLPFILSSLTGHIYHLSTHSYGCRVIQRLLEFGSSEDQESILNELKDFIPYLIQD--QYGNYVI 226 (369)
T ss_dssp HHHHHHHHH-HHSCGGGCHHHHHHHTTTHHHHHTSTTHHHHHHHHHHHSCHHHHHHHHHTTTTCHHHHHHS--TTHHHHH
T ss_pred cchHHHHHH-HhCCHHHHHHHHHHHHHHHHHHhCCCccCcHHHHHHHhCCHHHHHHHHHHHHHHHHHHhcC--CcHHHHH
Confidence 999999999 58899999999999999999999998 99999999998 6778999999999999999888 8899988
Q ss_pred hhhHHHhhhcCCChh-----hHHHHHHHhCCCCccccccCcChHHHHHHHHhhcCHHHHHHHHHHHHH------------
Q psy15035 160 HAVLLDFISHSSDSP-----DLMEVLEMLAPLPLLPFVHSKAGASVAMHIIWNATNKLKKKIVKELKG------------ 222 (816)
Q Consensus 160 h~vl~ey~~~~~~~~-----~~~~iie~l~~~~l~~L~~tk~Gs~Vv~~cl~~~~~kdRk~Iik~lk~------------ 222 (816)
++++ ..+++.. .+..+++.+.++ +.+|+++++||+|+++||.++++++|+.|++++.+
T Consensus 227 Q~~l----~~~~~~~~~~~~~~~~i~~~l~~~-~~~Ls~~k~gS~Vvek~l~~~~~~~r~~ii~~l~~~~~~~~~~~~~~ 301 (369)
T 3k49_A 227 QYVL----QQDQFTNKEMVDIKQEIIETVANN-VVEYSKHKFASNVVEKSILYGSKNQKDLIISKILPRDKNHALNLEDD 301 (369)
T ss_dssp HHHH----TCCTTSCHHHHHHHHHHHHHHHTT-HHHHHTSTTHHHHHHHHHHHSCHHHHHHHHTTTSCSSHHHHHTCCTT
T ss_pred HHHH----hcCCchhhhhHhHHHHHHHHHHHH-HHHHHhhhHhhHHHHHHHHhCCHHHHHHHHHHHhccccccccccccc
Confidence 8775 3444411 468999999999 99999999999999999999999999999999853
Q ss_pred -HHHHHhhCcCchHHHHHHHccCCchHHHHHHHHHHHHHhHHhHhc-ChhhHHHHHHh
Q psy15035 223 -HLREVATSEFGHLVLVTLLDNVDDTLLLKKALLPELLAEVVPLAN-HEYGRKVIAHL 278 (816)
Q Consensus 223 -~v~~La~d~~G~~Vlq~~l~~~DDt~l~~k~Iv~eL~~~l~~L~~-d~yG~~Vl~~L 278 (816)
.+..|+.|+|||||||++|+++++.. ++.|+.+|.+++..|.. +.||++++..+
T Consensus 302 ~~l~~L~~D~~gNyViq~~l~~~~~~~--~~~l~~~i~p~l~~L~~~~~~G~~~~~~~ 357 (369)
T 3k49_A 302 SPMILMIKDQFANYVIQKLVNVSEGEG--KKLIVIAIRAYLDKLNKSNSLGNRHLASV 357 (369)
T ss_dssp SHHHHHHTSTTHHHHHHHHHHHCCHHH--HHHHHHHHHHHHHHHHHCC--CCCCCHHH
T ss_pred cHHHHHHhCcchHHHHHHHHHhCCHHH--HHHHHHHHHHHHHHHhccccCcchHHHHH
Confidence 47899999999999999999998874 78999999999999986 69999887554
No 9
>3v71_A PUF (pumilio/FBF) domain-containing protein 7, CO transcript evidence; PUF repeats, RNA binding protein-RNA complex; HET: EPE; 2.90A {Caenorhabditis elegans}
Probab=100.00 E-value=2.6e-36 Score=337.18 Aligned_cols=271 Identities=14% Similarity=0.188 Sum_probs=239.3
Q ss_pred ccccccCCchHHHHhhhhcCCHHHHHHHHHH-HhHHHHHhhcCcchhHHHHHHHhcCCHHHHHHHHHHHhH-HHHHHhhC
Q psy15035 2 GQIVFSHDMSRIIQWLLKLSSPQMKKDIVKE-LLPFTVAMIKSKYSNALVKHMLKSGDENTKNEIIKALQP-HVVTLLSH 79 (816)
Q Consensus 2 ~~l~~~hd~sRvIQ~~lk~gt~eqR~~I~~E-L~~~i~eL~~d~yg~~vVQKlL~~gs~eqr~~Ii~e~~g-~v~~L~~h 79 (816)
.+++.++.|+++||++|++|++++|..|+.+ ++|+++.|+.++||+|||||++++++.+++..|+.++.+ +++.|+.|
T Consensus 63 ~~L~~d~~Gn~vvQklle~~~~~~~~~li~~~l~g~v~~Ls~~~~G~rvvQk~ie~~~~~~~~~li~eL~~~~~~~L~~D 142 (382)
T 3v71_A 63 VGLCHSRNGNFIVQKLVELATPAEQRELLRQMIDGGLLAMCKDKFACRVVQLALQKFDHSNVFQLIQELSTFDLAAMCTD 142 (382)
T ss_dssp HHHHSSTTHHHHHHHHHHTCCHHHHHHHHHHHHHTCHHHHHTSTTHHHHHHHHHHHSCHHHHHHHHHHHHTSCHHHHHHS
T ss_pred HHHhcCcHHHHHHHHHHHhCCHHHHHHHHHHHhcchHHHHHhCccchHHHHHHHHHCCHHHHHHHHHHhcccchHHHhcC
Confidence 4688999999999999999999999999988 589999999999999999999999999999999999998 89999999
Q ss_pred cCchHHHHHHHHhcCCHHHHHHHHHHHh--cCcceeeccC-CcchhHHhhcCC-hhH-------HH----HHHHHHHHHH
Q psy15035 80 TTASPVLMYAHDQVASPAQKLAMRQELY--GGLYESTGDK-KINCLGDIFEQS-PEM-------KT----AILSVTKKTI 144 (816)
Q Consensus 80 ~~G~~VVqk~~~~~at~eQr~~Li~e~y--g~~~~l~kd~-~~~~l~~ile~~-pek-------k~----~Il~~l~~~l 144 (816)
.+|++|||+++ ++.+++++..|+++|+ ++.+.+..|. |++++|++|+.. ++. +. .+++++..+.
T Consensus 143 ~~GnhVIQk~l-e~~~~~~~~~Ii~~~~~~~~~~~la~h~~Gc~VlQ~~le~~~~~~k~~~~~~r~~~l~~l~~~I~~~~ 221 (382)
T 3v71_A 143 QISIHVIQRVV-KQLPVDMWTFFVHFLSSGDSLMAVCQDKYGCRLVQQVIDRLAENPKLPCFKFRIQLLHSLMTCIVRNC 221 (382)
T ss_dssp TTTHHHHHHHH-TTSCTTTSHHHHHHHHSTTHHHHHHHSTTHHHHHHHHHHHHTCCSSSTTHHHHHHHHHHHHHHHHTTH
T ss_pred cccccHHHHHH-HHCCHHHHHHHHHHHhcccchHhHhcCchhhHHHHHHHHhCCHhhhhhhhhHHHHHHHHHHHHHHHHH
Confidence 99999999999 5889999999999998 5788899888 999999999973 322 22 3556666667
Q ss_pred HHhhhhhcccCCcchhhhHHHhhhcCCC-hhhHHHHHH-HhCCCCccccccCcChHHHHHHHHhhcCHHHHHHHHHHHHH
Q psy15035 145 LKSLQKTQVTGSALLHAVLLDFISHSSD-SPDLMEVLE-MLAPLPLLPFVHSKAGASVAMHIIWNATNKLKKKIVKELKG 222 (816)
Q Consensus 145 ~~lv~K~~~~~~~ivh~vl~ey~~~~~~-~~~~~~iie-~l~~~~l~~L~~tk~Gs~Vv~~cl~~~~~kdRk~Iik~lk~ 222 (816)
..++++ .+|++++|++|. ...+ ++.+..+++ .+.++ +.+|+++|+||+|+++||+++++++|+.|+++|.+
T Consensus 222 ~~L~~d--~~GNyVIQ~iL~----~~~~~e~~r~~ii~~~l~~~-~~~Ls~~k~gS~Vvek~l~~~~~~~r~~ii~el~~ 294 (382)
T 3v71_A 222 YRLSSN--EFANYVIQYVIK----SSGIMEMYRDTIIDKCLLRN-LLSMSQDKYASHVIEGAFLFAPPALLHEMMEEIFS 294 (382)
T ss_dssp HHHHTS--TTTHHHHHHHHT----CCSTHHHHHHHHHHHTTTTC-HHHHTTSTTHHHHHHHHHHHCCHHHHHHHHHHHCC
T ss_pred HHHhhC--ccccHHHHHHHh----cCCCcHHHHHHHHHHHHHHH-HHHHhcCchHhHHHHHHHHhCCHHHHHHHHHHHHh
Confidence 778888 899999988863 3443 246889997 49999 99999999999999999999999999999999974
Q ss_pred -----------HHHHHhhCcCchHHHHHHHccCCchH-----------------HHHHHHHHHHHHhHHhHhcChhhHHH
Q psy15035 223 -----------HLREVATSEFGHLVLVTLLDNVDDTL-----------------LLKKALLPELLAEVVPLANHEYGRKV 274 (816)
Q Consensus 223 -----------~v~~La~d~~G~~Vlq~~l~~~DDt~-----------------l~~k~Iv~eL~~~l~~L~~d~yG~~V 274 (816)
++..|++|+|||||||++|++++|+. ...+.|+..+.+++..|...+||++|
T Consensus 295 ~~~~~~~~~~~~l~~l~~D~ygNyVvQ~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~l~~~~~Gk~i 374 (382)
T 3v71_A 295 GYVKDVESNRDALDILLFHQYGNYVVQQMISICTAALIGKEERELPPAILLLYSGWYEKMKQRVLQHASRLERFSSGKKI 374 (382)
T ss_dssp --CCCSSSCCCHHHHHHTCTTHHHHHHHHHHHHHHHCC-----CCCTTTHHHHHHHHHHHHHHHHHHHHHHTTSHHHHHH
T ss_pred hccccccccchHHHHHHCCCCccHHHHHHHHHcccccccchhcccchhHHhhhhHHHHHHHHHHHHHHHHhhhCCchHHH
Confidence 78999999999999999999998742 12467999999999999999999999
Q ss_pred HHHhhc
Q psy15035 275 IAHLVS 280 (816)
Q Consensus 275 l~~Ll~ 280 (816)
+..|..
T Consensus 375 ~~~l~~ 380 (382)
T 3v71_A 375 IDSVMR 380 (382)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 988753
No 10
>3k62_A FEM-3 mRNA-binding factor 2; FBF, FEM-3 binding factor, PUF, RNA-binding specificity, base flipping, base stacking; 1.90A {Caenorhabditis elegans} PDB: 3k5y_A 3k5z_A 3k61_A 3k5q_A 3k64_A 3qg9_A 3v6y_A 3v74_A 3qgc_A 3qgb_A
Probab=100.00 E-value=1.4e-35 Score=333.63 Aligned_cols=272 Identities=14% Similarity=0.158 Sum_probs=241.3
Q ss_pred ccccccCCchHHHHhhhhcCCH-------HHHHHHHHHHhHHHHHhhcCcchhHHHHHHHhcCCHHHHHHHHHHH--hHH
Q psy15035 2 GQIVFSHDMSRIIQWLLKLSSP-------QMKKDIVKELLPFTVAMIKSKYSNALVKHMLKSGDENTKNEIIKAL--QPH 72 (816)
Q Consensus 2 ~~l~~~hd~sRvIQ~~lk~gt~-------eqR~~I~~EL~~~i~eL~~d~yg~~vVQKlL~~gs~eqr~~Ii~e~--~g~ 72 (816)
.+++.+..|.-+||++|++|++ ++|..|++.+.|++++|+.|+||+++|||+++++++++|..|+.+| .++
T Consensus 72 ~~L~~d~fGNyvvQKlle~~~~~~~~~~~~q~~~i~~~l~g~v~~L~~~~~GsrvvQk~le~~~~~~~~~iv~eL~~~~~ 151 (412)
T 3k62_A 72 LKLSTNIFGNYLVQSVIGISLATNDDGYTKRQEKLKNFISSQMTDMCLDKFACRVIQSSLQNMDLSLACKLVQALPRDAR 151 (412)
T ss_dssp HHHHTSTTHHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTHHHHHHSTTHHHHHHHHHHHSCHHHHHHHHHTSCCSHH
T ss_pred HHHHhCcHHHHHHHHHHHhCCcccccccHHHHHHHHHHHHHHHHHHHcChhhhHHHHHHHHhCCHHHHHHHHHHHhcccc
Confidence 4688999999999999999999 9999999999999999999999999999999999999999999999 799
Q ss_pred HHHHhhCcCchHHHHHHHHhcCCHHHHHHHHHHHhc--CcceeeccC-CcchhHHhhcCCh-------------hHHHHH
Q psy15035 73 VVTLLSHTTASPVLMYAHDQVASPAQKLAMRQELYG--GLYESTGDK-KINCLGDIFEQSP-------------EMKTAI 136 (816)
Q Consensus 73 v~~L~~h~~G~~VVqk~~~~~at~eQr~~Li~e~yg--~~~~l~kd~-~~~~l~~ile~~p-------------ekk~~I 136 (816)
+++|++|+||++|||+++ ++.+++++..|+++|.+ +.+.+..|. |++++|++|+..+ ++|..+
T Consensus 152 i~~L~~D~~GNhVIQK~L-e~~~~~~~~~I~~~~~~~~~~~~la~h~~GcrVvQk~le~~~~~~~~~~~~~~~~~qr~~i 230 (412)
T 3k62_A 152 LIAICVDQNANHVIQKVV-AVIPLKNWEFIVDFVATPEHLRQICSDKYGCRVVQTIIEKLTADSMNVDLTSAAQNLRERA 230 (412)
T ss_dssp HHHHHHCTTTHHHHHHHH-HHSCHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHHHTSCSGGGTTSCHHHHHHHHHH
T ss_pred HHHHHhCccccHHHHHHH-HhCCHHHHHHHHHHHhcchhHHHHhcCcchHHHHHHHHHhcCcccccchhhhhhHHHHHHH
Confidence 999999999999999999 58899999999999994 788898888 9999999999743 356544
Q ss_pred ----HHHHHHHHHHhhhhhcccCCcchhhhHHHhhhcCCChhhHHHHHH-HhCCCCccccccCcChHHHHHHHHhhcCHH
Q psy15035 137 ----LSVTKKTILKSLQKTQVTGSALLHAVLLDFISHSSDSPDLMEVLE-MLAPLPLLPFVHSKAGASVAMHIIWNATNK 211 (816)
Q Consensus 137 ----l~~l~~~l~~lv~K~~~~~~~ivh~vl~ey~~~~~~~~~~~~iie-~l~~~~l~~L~~tk~Gs~Vv~~cl~~~~~k 211 (816)
+.++..+...++++ .+|++++|+++.. ..+...+..+++ .+.++ +++|+++|+||+|+++||.+++++
T Consensus 231 l~~L~~~I~~~~~~L~~d--q~GNyViQ~iL~~----g~~~~~r~~ii~~~l~~~-~~~LS~~KfgSnVVek~L~~~~~~ 303 (412)
T 3k62_A 231 LQRLMTSVTNRCQELATN--EYANYIIQHIVSN----DDLAVYRECIIEKCLMRN-LLSLSQEKFASHVVEKAFLHAPLE 303 (412)
T ss_dssp HHHHHHHHHHTHHHHHHS--TTTHHHHHHHHHC----GGGHHHHHHHHHHHTTTC-HHHHHTSTTHHHHHHHHHHHCCHH
T ss_pred HHHHHHHHHHHHHHHhhC--ccccHHHHHHHhc----CCchhHHHHHHHHHHHHH-HHHHhcccHhHHHHHHHHHhCCHH
Confidence 55556666777788 8999999988633 444134788887 59999 999999999999999999999999
Q ss_pred HHHHHHHHHHH-----------HHHHHhhCcCchHHHHHHHccCCchHH------------------HHHHHHHHHHHhH
Q psy15035 212 LKKKIVKELKG-----------HLREVATSEFGHLVLVTLLDNVDDTLL------------------LKKALLPELLAEV 262 (816)
Q Consensus 212 dRk~Iik~lk~-----------~v~~La~d~~G~~Vlq~~l~~~DDt~l------------------~~k~Iv~eL~~~l 262 (816)
+|+.|+++|.+ .+..|++|+|||||||++|++++|++. ..+.|+..+.++.
T Consensus 304 ~r~~ii~ei~~~~~~~~~~~~~~l~~L~~DqyGNYViQ~~L~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~l~~~i~~~~ 383 (412)
T 3k62_A 304 LLAEMMDEIFDGYIPHPDTGKDALDIMMFHQFGNYVVQCMLTICCDAVSGRRQTKEGGYDHAISFQDWLKKLHSRVTKER 383 (412)
T ss_dssp HHHHHHHHHHHSSCCCTTTCCCHHHHHHHSTTHHHHHHHHHHHHHHHHTTSSCCEETTEETHHHHHHHHHHHHHHHHHTH
T ss_pred HHHHHHHHHHhhccCCccccchHHHHHhcCCchHHHHHHHHHHccccccchhhccccchhhhhhhHHHHHHHHHHHHHHH
Confidence 99999999985 488999999999999999999988732 2367999999999
Q ss_pred HhHhcChhhHHHHHHhhcc
Q psy15035 263 VPLANHEYGRKVIAHLVSW 281 (816)
Q Consensus 263 ~~L~~d~yG~~Vl~~Ll~~ 281 (816)
..|...+||++||.+|-.-
T Consensus 384 ~~L~~~~~Gk~i~~~l~~~ 402 (412)
T 3k62_A 384 HRLSRFSSGKKMIETLANL 402 (412)
T ss_dssp HHHTTSHHHHHHHHHHHHH
T ss_pred HHhccCCCccHHHHHHHHh
Confidence 9999999999999988643
No 11
>3phx_B Ubiquitin-like protein ISG15; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Homo sapiens}
Probab=99.73 E-value=8.9e-18 Score=145.02 Aligned_cols=78 Identities=21% Similarity=0.294 Sum_probs=74.1
Q ss_pred CCCceEEEEEecCCceEEEEcCCCCcHHHHHHHHhhhhCCCCCCeEEEECCeecCCCccccccCCCCCCEEEEe-eCCC
Q psy15035 601 PDNTLMINIKSNTGNTVCVNLDPASDIRNVKEMIAPKLGLKYEEVKIIFAGKELEDTTIISECDLGQQSILHAV-KSSP 678 (816)
Q Consensus 601 ~~~~M~V~Vk~~~g~t~~v~V~~~~TV~~LK~~I~~~~Gip~~~qrLif~Gk~L~d~~tL~~~~I~~~stl~lv-r~~g 678 (816)
++..|+|+||+.+|+++.++|++++||++||++|+.++|+|+++|+|+|+|+.|+|+.+|++|||++|++||++ |++|
T Consensus 1 ~~~~m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrL~~~G~~L~d~~tL~~~~i~~~~~l~l~~rl~G 79 (79)
T 3phx_B 1 MDEPLSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLEDQLPLGEYGLKPLSTVFMNLRLRG 79 (79)
T ss_dssp --CCEEEEEECTTSCEEEEEECTTSBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBGGGGTCCTTCEEEEEECCBC
T ss_pred CCCCEEEEEEeCCCCEEEEEECCcChHHHHHHHHHhhcCCCHHHEEEEECCEECCCCCcHHHCCCCCCCEEEEEEecCC
Confidence 35689999999999999999999999999999999999999999999999999999999999999999999999 8876
No 12
>3u5c_f 40S ribosomal protein S31; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_f
Probab=99.72 E-value=1.4e-18 Score=168.62 Aligned_cols=131 Identities=25% Similarity=0.395 Sum_probs=27.1
Q ss_pred eEEEEEecCCceEEEEcCCCCcHHHHHHHHhhhhCCCCCCeEEEECCeecCCCccccccCCCCCCEEEEe-eCCCCCCc-
Q psy15035 605 LMINIKSNTGNTVCVNLDPASDIRNVKEMIAPKLGLKYEEVKIIFAGKELEDTTIISECDLGQQSILHAV-KSSPENNK- 682 (816)
Q Consensus 605 M~V~Vk~~~g~t~~v~V~~~~TV~~LK~~I~~~~Gip~~~qrLif~Gk~L~d~~tL~~~~I~~~stl~lv-r~~gg~~~- 682 (816)
|+|+||+++|+++.++|++++||++||+.|++.+|+|+++|+|+|+|+.|+|+.||++|+|++|++|||+ |++||.++
T Consensus 1 MqI~VK~l~G~~~~l~V~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~dygI~~gstL~Lvlrl~GGgKkr 80 (152)
T 3u5c_f 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGGKKR 80 (152)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CEEEEEeCCCCEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEECCEEccccCcHHHcCCCCCCEEEEEeeccCCCcCc
Confidence 8999999999999999999999999999999999999999999999999999999999999999999999 99998433
Q ss_pred ----CCCCCCCCC--------cccccccccchhhhccCCCCCCCCCCCCCCCcccc----ceeccCcCCCcee
Q psy15035 683 ----IQKSKPMNS--------TLTDFHIQELDEESARSSSPDITQEPVTPSKAHFY----LRVRCAQCKSGAV 739 (816)
Q Consensus 683 ----~~~~~~~~~--------~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~----lRv~C~~C~~~~~ 739 (816)
...++.... .+....+++. ++...-...+|...+..+.|+ -|.+|+.|.-+-+
T Consensus 81 kKk~~t~Pkk~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~c~~~~cg~g~fma~h~~r~~cgkc~~t~~ 149 (152)
T 3u5c_f 81 KXXXXXXXXXXXXXXXXXXXXVLSYYKVDAE----GKVTKLRRECSNPTCGAGVFLANHKDRLYCGKCHSVYK 149 (152)
T ss_dssp -CCCCCCCSCCCCCCCCCCCCCCCCSEECSS----SCEECCSCBCCSTTSCSSSBEEECSSCEEESSSSSCCE
T ss_pred ccccccccccccccccccccceeeEEEEccC----CeEEECcCcCCCccCCCceEecccCCCcccCCCceEEE
Confidence 222222221 2222223221 223334455655567778888 7999999987543
No 13
>3plu_A Ubiquitin-like modifier HUB1; ubiquitin-like, HUB-1, SNU66, peptide binding protein; 1.40A {Saccharomyces cerevisiae} PDB: 3plv_A 1m94_A 1p0r_A
Probab=99.70 E-value=2.1e-17 Score=145.36 Aligned_cols=74 Identities=14% Similarity=0.262 Sum_probs=70.3
Q ss_pred CCCceEEEEEecCCceEEEEcCCCCcHHHHHHHHhhhhCCCCCCeEEEECCeecCCCccccccCCCCCCEEEEe
Q psy15035 601 PDNTLMINIKSNTGNTVCVNLDPASDIRNVKEMIAPKLGLKYEEVKIIFAGKELEDTTIISECDLGQQSILHAV 674 (816)
Q Consensus 601 ~~~~M~V~Vk~~~g~t~~v~V~~~~TV~~LK~~I~~~~Gip~~~qrLif~Gk~L~d~~tL~~~~I~~~stl~lv 674 (816)
.+..|+||||+++|++++++++|++||.+||++|++++|+|+++|||+|+|++|+|+.||++|+|++|+||||.
T Consensus 18 ~~~mIqI~Vk~~~Gkk~~v~v~p~DTI~~LK~~I~~k~Gip~~qQrLif~Gk~LkD~~TL~dY~I~dgstLhL~ 91 (93)
T 3plu_A 18 GSHMIEVVVNDRLGKKVRVKCLGEDSVGDFKKVLSLQIGTQPNKIVLQKGGSVLKDHISLEDYEVHDQTNLELY 91 (93)
T ss_dssp --CEEEEEEECTTSCEEEEEEETTSBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEE
T ss_pred CCceEEEEEECCCCCEEEEEECCcCHHHHHHHHHHHHhCCCHHHEEEEeCCEEccCcCCHHHcCCCCCCEEEEE
Confidence 34578999999999999999999999999999999999999999999999999999999999999999999985
No 14
>4fbj_B NEDD8; effector-HOST target complex, glutamine deamidase, deamidati bacterial effector, cell cycle-protein binding complex; 1.60A {Homo sapiens} PDB: 4f8c_B
Probab=99.70 E-value=3e-17 Score=145.02 Aligned_cols=77 Identities=22% Similarity=0.500 Sum_probs=72.1
Q ss_pred eEEEEEecCCceEEEEcCCCCcHHHHHHHHhhhhCCCCCCeEEEECCeecCCCccccccCCCCCCEEEEe-eCCCCCC
Q psy15035 605 LMINIKSNTGNTVCVNLDPASDIRNVKEMIAPKLGLKYEEVKIIFAGKELEDTTIISECDLGQQSILHAV-KSSPENN 681 (816)
Q Consensus 605 M~V~Vk~~~g~t~~v~V~~~~TV~~LK~~I~~~~Gip~~~qrLif~Gk~L~d~~tL~~~~I~~~stl~lv-r~~gg~~ 681 (816)
|+|+||+.+|++++++|++++||++||++|++++|+|+++|+|+|+|+.|+|+.+|++|+|++|++|+|+ |++||+.
T Consensus 1 M~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~~~i~~g~~l~l~~rl~Gg~~ 78 (88)
T 4fbj_B 1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKILGGSVLHLVLALRGGGG 78 (88)
T ss_dssp CEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTSBTTTTTCCTTCEEEEECBCC----
T ss_pred CEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHHCcChhHEEEEECCeECCCCCcHHHcCCCCCCEEEEEEECCCCCC
Confidence 8999999999999999999999999999999999999999999999999999999999999999999999 9999854
No 15
>4dwf_A HLA-B-associated transcript 3; ubiquitin-like domain, BAT3 protein, PF00240, structural GEN joint center for structural genomics, JCSG; 1.80A {Homo sapiens} PDB: 1wx9_A
Probab=99.68 E-value=7.5e-17 Score=142.81 Aligned_cols=79 Identities=20% Similarity=0.439 Sum_probs=73.0
Q ss_pred CCceEEEEEecCCceEEEEcCCCCcHHHHHHHHhhhhCCCCCCeEEEECCeecCCCccccccCCCCCCEEEEe-eCCCCC
Q psy15035 602 DNTLMINIKSNTGNTVCVNLDPASDIRNVKEMIAPKLGLKYEEVKIIFAGKELEDTTIISECDLGQQSILHAV-KSSPEN 680 (816)
Q Consensus 602 ~~~M~V~Vk~~~g~t~~v~V~~~~TV~~LK~~I~~~~Gip~~~qrLif~Gk~L~d~~tL~~~~I~~~stl~lv-r~~gg~ 680 (816)
+.+|+|+||+.+|+++.++|++++||.+||++|+.++|+|+++|||+|+|+.|+|+.+|++|+| +|++|||+ |.+++.
T Consensus 3 ~~~m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrLi~~Gk~L~d~~tL~~~~i-~g~~i~l~~~~~~~~ 81 (90)
T 4dwf_A 3 PDSLEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLIYQGRVLQDDKKLQEYNV-GGKVIHLVERAPPQT 81 (90)
T ss_dssp CCEEEEEEEETTCCEEEEEEETTCBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBGGGGTC-TTEEEEEEECCCC--
T ss_pred CcEEEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEECCeECCCCCCHHHcCC-CCcEEEEEecCCCCC
Confidence 4579999999999999999999999999999999999999999999999999999999999999 89999999 877664
Q ss_pred C
Q psy15035 681 N 681 (816)
Q Consensus 681 ~ 681 (816)
.
T Consensus 82 ~ 82 (90)
T 4dwf_A 82 H 82 (90)
T ss_dssp -
T ss_pred C
Confidence 3
No 16
>2hj8_A Interferon-induced 17 kDa protein; HR2873B, human ISG15, structure, northeast structural genomics consortium, protein structure initiative, NESG; NMR {Homo sapiens}
Probab=99.67 E-value=5e-17 Score=143.53 Aligned_cols=81 Identities=20% Similarity=0.272 Sum_probs=72.3
Q ss_pred CCCceEEEEEecCCceEEEEcCCCCcHHHHHHHHhhhhCCCCCCeEEEECCeecCCCccccccCCCCCCEEEEe-eCCCC
Q psy15035 601 PDNTLMINIKSNTGNTVCVNLDPASDIRNVKEMIAPKLGLKYEEVKIIFAGKELEDTTIISECDLGQQSILHAV-KSSPE 679 (816)
Q Consensus 601 ~~~~M~V~Vk~~~g~t~~v~V~~~~TV~~LK~~I~~~~Gip~~~qrLif~Gk~L~d~~tL~~~~I~~~stl~lv-r~~gg 679 (816)
|+..|+|+||+.+|+++.++|++++||++||++|+.++|+|+++|+|+|+|+.|+|+.+|++|+|++|++|+++ +.+||
T Consensus 1 m~~~m~I~Vk~~~g~~~~~~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D~~tL~~~~I~~g~~i~l~~~~~gg 80 (88)
T 2hj8_A 1 MDEPLSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLEDQLPLGEYGLKPLSTVFMNLRLRGG 80 (88)
T ss_dssp -CCEEEEEEEETTSCEEEEEEESSSBHHHHHHHHHHHTCSCTTTEEEESSSSCCCTTSBHHHHHCSTTCEEEEEEC----
T ss_pred CCccEEEEEECCCCCEEEEEECCCCcHHHHHHHHHHHhCCChhHEEEEECCEECCCCCcHHHcCCCCCCEEEEEEEcCCC
Confidence 45689999999999999999999999999999999999999999999999999999999999999999999999 88888
Q ss_pred CC
Q psy15035 680 NN 681 (816)
Q Consensus 680 ~~ 681 (816)
+.
T Consensus 81 ~~ 82 (88)
T 2hj8_A 81 LE 82 (88)
T ss_dssp --
T ss_pred cc
Confidence 53
No 17
>3dbh_I NEDD8; cell cycle, activating enzyme, apoptosis, membrane, UBL conjugation pathway, ATP-binding, ligase, nucleotide- binding, polymorphism; 2.85A {Homo sapiens} SCOP: d.15.1.1 PDB: 3dbr_I 3dbl_I
Probab=99.67 E-value=1.2e-16 Score=140.55 Aligned_cols=79 Identities=22% Similarity=0.507 Sum_probs=76.3
Q ss_pred CCCceEEEEEecCCceEEEEcCCCCcHHHHHHHHhhhhCCCCCCeEEEECCeecCCCccccccCCCCCCEEEEe-eCCCC
Q psy15035 601 PDNTLMINIKSNTGNTVCVNLDPASDIRNVKEMIAPKLGLKYEEVKIIFAGKELEDTTIISECDLGQQSILHAV-KSSPE 679 (816)
Q Consensus 601 ~~~~M~V~Vk~~~g~t~~v~V~~~~TV~~LK~~I~~~~Gip~~~qrLif~Gk~L~d~~tL~~~~I~~~stl~lv-r~~gg 679 (816)
...+|+|+||+.+|+++.++|++++||.+||++|++.+|+|+++|+|+|+|+.|+|+.+|++|+|+++++||++ |++||
T Consensus 9 ~~~~m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrL~~~G~~L~d~~tL~~~~i~~~~~i~l~~rl~GG 88 (88)
T 3dbh_I 9 SGGSMLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKILGGSVLHLVLRLRGG 88 (88)
T ss_dssp CCCCEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCCEEETTEECCTTSBGGGGTCCTTCEEEECCCCCCC
T ss_pred CCCcEEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHHCcCHHHEEEEECCeECCCCCcHHHcCCCCCCEEEEEEeCCCC
Confidence 45679999999999999999999999999999999999999999999999999999999999999999999999 99987
No 18
>3n3k_B Ubiquitin; hydrolase, protease, thiol protease, DUB, zinc ribbon, inhibitor, ubiqu acetylation, cytoplasm, isopeptide bond, nucleus; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=99.67 E-value=9.8e-17 Score=140.11 Aligned_cols=80 Identities=30% Similarity=0.486 Sum_probs=72.1
Q ss_pred CceEEEEEecCCceEEEEcCCCCcHHHHHHHHhhhhCCCCCCeEEEECCeecCCCccccccCCCCCCEEEEe-eCCCCCC
Q psy15035 603 NTLMINIKSNTGNTVCVNLDPASDIRNVKEMIAPKLGLKYEEVKIIFAGKELEDTTIISECDLGQQSILHAV-KSSPENN 681 (816)
Q Consensus 603 ~~M~V~Vk~~~g~t~~v~V~~~~TV~~LK~~I~~~~Gip~~~qrLif~Gk~L~d~~tL~~~~I~~~stl~lv-r~~gg~~ 681 (816)
.+|+|+||+.+|++++++|++++||.+||++|++++|+|+++|+|+|+|+.|+|+.+|++|+|+++++||++ |++||+.
T Consensus 2 s~m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~~ip~~~qrL~~~g~~L~d~~tL~~~~i~~~~~i~l~~rl~GG~g 81 (85)
T 3n3k_B 2 SHMRIVVKTLMGRTIILEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIHNHSALYLLLKLRGGGG 81 (85)
T ss_dssp --CEEEEECGGGCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETBEECCTTCBTTTTTCCTTCEEEEEECCC----
T ss_pred CeEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCCHHHEEEEECCeECCCCCCHHHCCCCCCCEEEEEEeccCCCC
Confidence 469999999999999999999999999999999999999999999999999999999999999999999999 9999865
Q ss_pred c
Q psy15035 682 K 682 (816)
Q Consensus 682 ~ 682 (816)
.
T Consensus 82 ~ 82 (85)
T 3n3k_B 82 G 82 (85)
T ss_dssp -
T ss_pred C
Confidence 4
No 19
>1ndd_A NEDD8, protein (ubiquitin-like protein NEDD8); proteolysis, signaling protei; 1.60A {Homo sapiens} SCOP: d.15.1.1 PDB: 1r4m_I 1r4n_I* 1xt9_B 2ko3_A 3gzn_I* 2bkr_B 2nvu_I* 3dqv_A 1bt0_A
Probab=99.66 E-value=1.9e-16 Score=134.91 Aligned_cols=75 Identities=23% Similarity=0.510 Sum_probs=71.8
Q ss_pred eEEEEEecCCceEEEEcCCCCcHHHHHHHHhhhhCCCCCCeEEEECCeecCCCccccccCCCCCCEEEEe-eCCCC
Q psy15035 605 LMINIKSNTGNTVCVNLDPASDIRNVKEMIAPKLGLKYEEVKIIFAGKELEDTTIISECDLGQQSILHAV-KSSPE 679 (816)
Q Consensus 605 M~V~Vk~~~g~t~~v~V~~~~TV~~LK~~I~~~~Gip~~~qrLif~Gk~L~d~~tL~~~~I~~~stl~lv-r~~gg 679 (816)
|+|+||+.+|+++.++|++++||++||++|++.+|+|+++|+|+|+|+.|+|+.+|++|||++|++||++ |++||
T Consensus 1 M~i~vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~tL~~~~i~~g~~i~l~~~~~GG 76 (76)
T 1ndd_A 1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKILGGSVLHLVLALRGG 76 (76)
T ss_dssp CEEEEECTTSCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBGGGGTCCTTCEEEEEECCC--
T ss_pred CEEEEECCCCCEEEEEECCCChHHHHHHHHHHHHCcChHHEEEEECCEECCCCCcHHHcCCCCCCEEEEEEeCCCC
Confidence 8999999999999999999999999999999999999999999999999999999999999999999999 99887
No 20
>4hcn_B Polyubiquitin, ubiquitin; ubiquitin/NEDD8 deamidase, NEDD8, protein binding; 2.60A {Saccharomyces cerevisiae}
Probab=99.66 E-value=1.9e-16 Score=142.64 Aligned_cols=79 Identities=32% Similarity=0.524 Sum_probs=74.6
Q ss_pred CCCceEEEEEecCCceEEEEcCCCCcHHHHHHHHhhhhCCCCCCeEEEECCeecCCCccccccCCCCCCEEEEe-eCCCC
Q psy15035 601 PDNTLMINIKSNTGNTVCVNLDPASDIRNVKEMIAPKLGLKYEEVKIIFAGKELEDTTIISECDLGQQSILHAV-KSSPE 679 (816)
Q Consensus 601 ~~~~M~V~Vk~~~g~t~~v~V~~~~TV~~LK~~I~~~~Gip~~~qrLif~Gk~L~d~~tL~~~~I~~~stl~lv-r~~gg 679 (816)
.+..|+|+||+.+|+++.++|++++||.+||++|++++|+|+++|||+|+|+.|+|+.+|++|+|+++++|||+ |++||
T Consensus 19 ~~~~m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~~~i~~g~~i~l~~rl~GG 98 (98)
T 4hcn_B 19 QGRPMQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 98 (98)
T ss_dssp ---CCEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTCBSGGGTCCTTEEEEEECBCSCC
T ss_pred CCCeEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHhCCChhHEEEEECCEECCCCCcHHHCCCCCCCEEEEEEecCCC
Confidence 45679999999999999999999999999999999999999999999999999999999999999999999999 99987
No 21
>3k9o_B Ubiquitin, UBB+1; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 2k25_A 2kx0_A
Probab=99.66 E-value=2.6e-16 Score=140.93 Aligned_cols=78 Identities=33% Similarity=0.553 Sum_probs=73.0
Q ss_pred eEEEEEecCCceEEEEcCCCCcHHHHHHHHhhhhCCCCCCeEEEECCeecCCCccccccCCCCCCEEEEe-eCCCCCCc
Q psy15035 605 LMINIKSNTGNTVCVNLDPASDIRNVKEMIAPKLGLKYEEVKIIFAGKELEDTTIISECDLGQQSILHAV-KSSPENNK 682 (816)
Q Consensus 605 M~V~Vk~~~g~t~~v~V~~~~TV~~LK~~I~~~~Gip~~~qrLif~Gk~L~d~~tL~~~~I~~~stl~lv-r~~gg~~~ 682 (816)
|+|+||+.+|+++.++|++++||.+||++|++++|+|+++|+|+|+|+.|+|+.+|++|+|.++++|||+ |++||.+.
T Consensus 2 m~i~vk~~~g~~~~~~v~~~~TV~~LK~~i~~~~gip~~~qrL~~~G~~L~d~~tL~~~~i~~~~~i~l~~r~~gG~~~ 80 (96)
T 3k9o_B 2 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGYADL 80 (96)
T ss_dssp CEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEECCCC----
T ss_pred cEEEEEeCCCCEEEEEECCCCCHHHHHHHHHhhhCCChhHEEEEECCEECCCCCcHHHcCCCCCCEEEEEEEcCCCCcc
Confidence 8999999999999999999999999999999999999999999999999999999999999999999999 99998543
No 22
>2kan_A Uncharacterized protein AR3433A; ubiquitin fold, alpha+beta, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=99.66 E-value=2.5e-16 Score=140.89 Aligned_cols=80 Identities=16% Similarity=0.247 Sum_probs=75.6
Q ss_pred CCCceEEEEEecCCceEEEEcCCCCcHHHHHHHHhhhhCCCCCCeEEEECCeecCCC-ccccccCCCCCCEEEEe-eCCC
Q psy15035 601 PDNTLMINIKSNTGNTVCVNLDPASDIRNVKEMIAPKLGLKYEEVKIIFAGKELEDT-TIISECDLGQQSILHAV-KSSP 678 (816)
Q Consensus 601 ~~~~M~V~Vk~~~g~t~~v~V~~~~TV~~LK~~I~~~~Gip~~~qrLif~Gk~L~d~-~tL~~~~I~~~stl~lv-r~~g 678 (816)
....|+|+||+++| ++.++|++++||++||++|+.++|+|+++|+|+|+|+.|+|+ .||++|||+++++|+|+ |++|
T Consensus 12 ~~~~~~I~Vk~~~~-~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~~tL~~ygI~~gstl~lv~r~~g 90 (94)
T 2kan_A 12 AVRKIHVTVKFPSK-QFTVEVDRTETVSSLKDKIHIVENTPIKRMQLYYSGIELADDYRNLNEYGITEFSEIVVFLKSIN 90 (94)
T ss_dssp SSCCEEEEEECSSC-EEEEEECTTCBHHHHHHHHHHHSSSCTTTEEEEETTEEECCTTSBHHHHTCCTTEEEEEEECCCS
T ss_pred CCCCEEEEEEcCCc-EEEEEECCCCcHHHHHHHHHHHHCcCHHHEEEEECCEECCCCcccHHHCCCCCCCEEEEEEeCCC
Confidence 56689999999887 899999999999999999999999999999999999999999 99999999999999999 9998
Q ss_pred CCC
Q psy15035 679 ENN 681 (816)
Q Consensus 679 g~~ 681 (816)
|++
T Consensus 91 g~~ 93 (94)
T 2kan_A 91 RAK 93 (94)
T ss_dssp SCC
T ss_pred CCC
Confidence 843
No 23
>3mtn_B UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquitin-specific protease activity, hydrolase, ubiquitin B structural genomics consortium, SGC; 2.70A {Homo sapiens} SCOP: d.15.1.1
Probab=99.65 E-value=3.1e-16 Score=136.86 Aligned_cols=79 Identities=30% Similarity=0.510 Sum_probs=74.7
Q ss_pred CceEEEEEecCCceEEEEcCCCCcHHHHHHHHhhhhCCCCCCeEEEECCeecCCCccccccCCCCCCEEEEe-eCCCCCC
Q psy15035 603 NTLMINIKSNTGNTVCVNLDPASDIRNVKEMIAPKLGLKYEEVKIIFAGKELEDTTIISECDLGQQSILHAV-KSSPENN 681 (816)
Q Consensus 603 ~~M~V~Vk~~~g~t~~v~V~~~~TV~~LK~~I~~~~Gip~~~qrLif~Gk~L~d~~tL~~~~I~~~stl~lv-r~~gg~~ 681 (816)
.+|+|+||+.+|+++.++|++++||.+||++|++++|+|+++|+|+|+|+.|+|+.+|++|+|+++++||++ |++||+.
T Consensus 2 s~m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~qrL~~~g~~L~d~~tL~~~~i~~~~~l~l~~r~~GG~g 81 (85)
T 3mtn_B 2 SHMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKWSTLFLLLRLRGGGG 81 (85)
T ss_dssp -CEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTSBTGGGTCCTTCEEEEECCCCCC--
T ss_pred CeEEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHHCcChHHEEEEECCEECCCCCCHHHcCCCCCCEEEEEEECcCCCC
Confidence 469999999999999999999999999999999999999999999999999999999999999999999999 9999854
No 24
>1wh3_A 59 kDa 2'-5'-oligoadenylate synthetase like protein; P59 OASL, ubiquitin family, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.65 E-value=3e-16 Score=137.89 Aligned_cols=80 Identities=19% Similarity=0.270 Sum_probs=76.6
Q ss_pred CCCceEEEEEecCCceEEEEcCCCCcHHHHHHHHhhhhCCCCCCeEEEECCeecCCCccccccCCCCCCEEEEe-eCCCC
Q psy15035 601 PDNTLMINIKSNTGNTVCVNLDPASDIRNVKEMIAPKLGLKYEEVKIIFAGKELEDTTIISECDLGQQSILHAV-KSSPE 679 (816)
Q Consensus 601 ~~~~M~V~Vk~~~g~t~~v~V~~~~TV~~LK~~I~~~~Gip~~~qrLif~Gk~L~d~~tL~~~~I~~~stl~lv-r~~gg 679 (816)
.+..|+|+||+.+|+++.++|++++||.+||++|++++|+|+++|+|+|+|+.|+|+.+|++|+|.++++||++ |++||
T Consensus 4 ~~~~m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~qrL~~~Gk~L~d~~tL~~~~i~~g~~i~l~~~~~GG 83 (87)
T 1wh3_A 4 GSSGIQVFVKNPDGGSYAYAINPNSFILGLKQQIEDQQGLPKKQQQLEFQGQVLQDWLGLGIYGIQDSDTLILSKKKGSG 83 (87)
T ss_dssp CSSSEEEEEEETTTEEEEEEECSSSBHHHHHHHHHHHTCCCTTTEEEEETTEECCSSSBHHHHTCCTTEEEEEEECSCCC
T ss_pred CCCCEEEEEEcCCCCEEEEEeCCCChHHHHHHHHHHHhCCChHHEEEEECCEEccCCCCHHHCCCCCCCEEEEEEeccCC
Confidence 34679999999999999999999999999999999999999999999999999999999999999999999999 99998
Q ss_pred C
Q psy15035 680 N 680 (816)
Q Consensus 680 ~ 680 (816)
+
T Consensus 84 ~ 84 (87)
T 1wh3_A 84 P 84 (87)
T ss_dssp S
T ss_pred C
Confidence 5
No 25
>1wy8_A NP95-like ring finger protein, isoform A; ubiquitin-like domain, NP95/ICBP90-like ring finger (NIRF), ubiquitin ligase, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.65 E-value=4e-16 Score=137.73 Aligned_cols=81 Identities=16% Similarity=0.388 Sum_probs=76.1
Q ss_pred CCCceEEEEEecCC-ceEEE-EcCCCCcHHHHHHHHhhhhCCCCCCeEEEECCeecCCCccccccCCCCCCEEEEe-eCC
Q psy15035 601 PDNTLMINIKSNTG-NTVCV-NLDPASDIRNVKEMIAPKLGLKYEEVKIIFAGKELEDTTIISECDLGQQSILHAV-KSS 677 (816)
Q Consensus 601 ~~~~M~V~Vk~~~g-~t~~v-~V~~~~TV~~LK~~I~~~~Gip~~~qrLif~Gk~L~d~~tL~~~~I~~~stl~lv-r~~ 677 (816)
.+..|+|+||+.+| +++.+ +|++++||.+||++|+.++|+|+++|+|+|+|+.|+|+.+|++|+|.++++|||+ |++
T Consensus 4 ~~~~m~i~Vk~~~g~~~~~l~~v~~~~tV~~lK~~i~~~~gip~~~qrL~~~gk~L~d~~tL~~~~i~~g~~i~l~~~~~ 83 (89)
T 1wy8_A 4 GSSGMWIQVRTIDGSKTCTIEDVSRKATIEELRERVWALFDVRPECQRLFYRGKQLENGYTLFDYDVGLNDIIQLLVRPD 83 (89)
T ss_dssp CSSCEEEEEEETTCSCEEEEEEECTTCBHHHHHHHHHHHSCCCTTTEEEEETTEECCSSSBHHHHTCCTTCEEEEEECCC
T ss_pred CCCcEEEEEEECCCCceEEEEecCCCCCHHHHHHHHHHHHCcChhhEEEEECCeECCCCCCHHHCCCCCCCEEEEEEeCC
Confidence 35679999999999 79999 5999999999999999999999999999999999999999999999999999999 999
Q ss_pred CCCC
Q psy15035 678 PENN 681 (816)
Q Consensus 678 gg~~ 681 (816)
||++
T Consensus 84 gG~~ 87 (89)
T 1wy8_A 84 SGPS 87 (89)
T ss_dssp CSSC
T ss_pred CCCC
Confidence 8843
No 26
>1sif_A Ubiquitin; hydrophobic mutants, folding, stability, structural protein; 2.18A {Homo sapiens} SCOP: d.15.1.1
Probab=99.65 E-value=2.9e-16 Score=138.61 Aligned_cols=78 Identities=35% Similarity=0.557 Sum_probs=69.4
Q ss_pred CceEEEEEecCCceEEEEcCCCCcHHHHHHHHhhhhCCCCCCeEEEECCeecCCCccccccCCCCCCEEEEe-eCCCCC
Q psy15035 603 NTLMINIKSNTGNTVCVNLDPASDIRNVKEMIAPKLGLKYEEVKIIFAGKELEDTTIISECDLGQQSILHAV-KSSPEN 680 (816)
Q Consensus 603 ~~M~V~Vk~~~g~t~~v~V~~~~TV~~LK~~I~~~~Gip~~~qrLif~Gk~L~d~~tL~~~~I~~~stl~lv-r~~gg~ 680 (816)
..|+|+||+.+|+++.++|++++||++||++|++++|+|+++|+|+|+|+.|+|+.||++|+|+++++|+++ |++||+
T Consensus 8 ~~~~i~v~~~~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~i~l~~r~~GG~ 86 (88)
T 1sif_A 8 QGLQLFIKTLTGKTFTVEMEPSDTIENLKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGG 86 (88)
T ss_dssp --CEEEEEETTSCEEEEECCTTSBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTSBSGGGTCCTTCEEEEEC------
T ss_pred cceEEEEEeCCCCEEEEEECCCChHHHHHHHHHHHHCcChhhEEEEECCEECCCCCcHHHcCCCCCCEEEEEEeCCCCC
Confidence 469999999999999999999999999999999999999999999999999999999999999999999999 999884
No 27
>3a9j_A Ubiquitin; protein complex, cytoplasm, isopeptide bond, metal-binding, zinc; 1.18A {Mus musculus} PDB: 3a1q_B 2znv_B 3a9k_A 3h7p_A 3jsv_A 3dvg_Y 3dvn_Y 3nob_A 2o6v_D* 3jw0_X 3jvz_X 3nhe_B* 1aar_A 1d3z_A 1f9j_A 1fxt_B 1g6j_A 1nbf_C 1cmx_B 1q5w_B ...
Probab=99.65 E-value=4.7e-16 Score=132.50 Aligned_cols=75 Identities=35% Similarity=0.585 Sum_probs=73.3
Q ss_pred eEEEEEecCCceEEEEcCCCCcHHHHHHHHhhhhCCCCCCeEEEECCeecCCCccccccCCCCCCEEEEe-eCCCC
Q psy15035 605 LMINIKSNTGNTVCVNLDPASDIRNVKEMIAPKLGLKYEEVKIIFAGKELEDTTIISECDLGQQSILHAV-KSSPE 679 (816)
Q Consensus 605 M~V~Vk~~~g~t~~v~V~~~~TV~~LK~~I~~~~Gip~~~qrLif~Gk~L~d~~tL~~~~I~~~stl~lv-r~~gg 679 (816)
|+|+||+.+|+++.++|++++||.+||+.|++.+|+|+++|+|+|+|+.|+|+.+|++|||++|++||++ |++||
T Consensus 1 M~i~vk~~~g~~~~i~v~~~~tv~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~tL~~~~i~~g~~i~l~~~~~GG 76 (76)
T 3a9j_A 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQRESTLHLVLRLRGG 76 (76)
T ss_dssp CEEEEEETTSCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTCBTGGGTCCTTCEEEEEECCCCC
T ss_pred CEEEEEcCCCCEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEECCeECCCCCcHHHcCCCCCCEEEEEEeCCCC
Confidence 8999999999999999999999999999999999999999999999999999999999999999999999 99887
No 28
>2uyz_B Small ubiquitin-related modifier 1; sumoylation, cell division, nuclear protein, ubiquitin-like modifier, UBL conjugation pathway; 1.4A {Homo sapiens} SCOP: d.15.1.1 PDB: 2vrr_B 2iy0_B 2iy1_B 2g4d_B 2las_A 2io2_B 1z5s_B 3uip_B* 1tgz_B* 2bf8_B
Probab=99.65 E-value=1.9e-16 Score=136.64 Aligned_cols=76 Identities=9% Similarity=0.338 Sum_probs=73.5
Q ss_pred ceEEEEEecCCceEEEEcCCCCcHHHHHHHHhhhhCCCCCCeEEEECCeecCCCccccccCCCCCCEEEEe-eCCCC
Q psy15035 604 TLMINIKSNTGNTVCVNLDPASDIRNVKEMIAPKLGLKYEEVKIIFAGKELEDTTIISECDLGQQSILHAV-KSSPE 679 (816)
Q Consensus 604 ~M~V~Vk~~~g~t~~v~V~~~~TV~~LK~~I~~~~Gip~~~qrLif~Gk~L~d~~tL~~~~I~~~stl~lv-r~~gg 679 (816)
.|+|+||+.+|+++.++|++++||.+||++|+++.|+|+++|+|+|+|+.|+|+.||++|+|+++++||++ |++||
T Consensus 3 ~m~i~vk~~~g~~~~~~v~~~~tv~~lk~~i~~~~gi~~~~qrL~~~G~~L~d~~tl~~~~i~~~~~i~l~~~~~GG 79 (79)
T 2uyz_B 3 YIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTPKELGMEEEDVIEVYQEQTGG 79 (79)
T ss_dssp EEEEEEECTTCCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTEECCTTCCHHHHTCCTTEEEEEEECCCC-
T ss_pred eEEEEEECCCCCEEEEEECCCChHHHHHHHHHHHHCCCcccEEEEECCEEeCCCCCHHHcCCCCCCEEEEEEeccCC
Confidence 59999999999999999999999999999999999999999999999999999999999999999999999 99887
No 29
>1uh6_A Ubiquitin-like 5; beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.64 E-value=1.9e-16 Score=141.96 Aligned_cols=72 Identities=14% Similarity=0.241 Sum_probs=70.0
Q ss_pred CceEEEEEecCCceEEEEcCCCCcHHHHHHHHhhhhCCCCCCeEEEECCeecCCCccccccCCCCCCEEEEe
Q psy15035 603 NTLMINIKSNTGNTVCVNLDPASDIRNVKEMIAPKLGLKYEEVKIIFAGKELEDTTIISECDLGQQSILHAV 674 (816)
Q Consensus 603 ~~M~V~Vk~~~g~t~~v~V~~~~TV~~LK~~I~~~~Gip~~~qrLif~Gk~L~d~~tL~~~~I~~~stl~lv 674 (816)
..|+|+||+++|++++|+|++++||++||++|++++|+|+++|||+|+|++|+|+.||++|+|++++||||+
T Consensus 27 ~mm~I~VKtl~Gk~i~lev~p~dTV~~lK~~Ia~k~Gip~~qQrLi~~Gk~L~D~~TL~dygI~~gstlhL~ 98 (100)
T 1uh6_A 27 TMIEVVCNDRLGKKVRVKCNTDDTIGDLKKLIAAQTGTRWNKIVLKKWYTIFKDHVSLGDYEIHDGMNLELY 98 (100)
T ss_dssp CEEEEEEECSSSSCEEEEEETTSBHHHHHHHHHHHHCCCGGGCEEEETTEECCSSCBHHHHTCCTTEEEEEE
T ss_pred CeEEEEEECCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCHHHEEEEECCEECCCCCCHHHcCCCCCCEEEEE
Confidence 459999999999999999999999999999999999999999999999999999999999999999999986
No 30
>1wyw_B Ubiquitin-like protein SMT3C; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 1y8r_C* 2asq_A 2pe6_B 1a5r_A 2kqs_A 3kyc_D* 3rzw_C
Probab=99.64 E-value=2.6e-16 Score=141.51 Aligned_cols=79 Identities=9% Similarity=0.327 Sum_probs=75.6
Q ss_pred CCCceEEEEEecCCceEEEEcCCCCcHHHHHHHHhhhhCCCCCCeEEEECCeecCCCccccccCCCCCCEEEEe-eCCCC
Q psy15035 601 PDNTLMINIKSNTGNTVCVNLDPASDIRNVKEMIAPKLGLKYEEVKIIFAGKELEDTTIISECDLGQQSILHAV-KSSPE 679 (816)
Q Consensus 601 ~~~~M~V~Vk~~~g~t~~v~V~~~~TV~~LK~~I~~~~Gip~~~qrLif~Gk~L~d~~tL~~~~I~~~stl~lv-r~~gg 679 (816)
.+..|+|+||+.+|+++.++|.+++||.+||++|+.+.|+|+++|||+|+|+.|+|+.||++|+|+++++|||+ |++||
T Consensus 18 ~~~~m~I~Vk~~~g~~~~l~v~~~~tv~~lK~~i~~~~gip~~~qrLif~Gk~L~d~~tl~dy~i~~g~~I~l~~~~~GG 97 (97)
T 1wyw_B 18 EGEYIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTPKELGMEEEDVIEVYQEQTGG 97 (97)
T ss_dssp -CCEEEEEEECTTCCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTEECCTTCCHHHHTCCTTCEEEEEESSSCC
T ss_pred CCCcEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCChhhEEEEECCeEcCCCCCHHHCCCCCCCEEEEEEecCCC
Confidence 34579999999999999999999999999999999999999999999999999999999999999999999999 99987
No 31
>3v6c_B Ubiquitin; structural genomics, structural genomics consortium, SGC, UB protease, hydrolase-signaling protein complex; 1.70A {Homo sapiens} PDB: 3v6e_B
Probab=99.64 E-value=5.5e-16 Score=137.65 Aligned_cols=77 Identities=32% Similarity=0.596 Sum_probs=73.8
Q ss_pred CCCceEEEEEecCCceEEEEcCCCCcHHHHHHHHhhhhCCCCCCeEEEECCeecCCCccccccCCCCCCEEEEe-eCC
Q psy15035 601 PDNTLMINIKSNTGNTVCVNLDPASDIRNVKEMIAPKLGLKYEEVKIIFAGKELEDTTIISECDLGQQSILHAV-KSS 677 (816)
Q Consensus 601 ~~~~M~V~Vk~~~g~t~~v~V~~~~TV~~LK~~I~~~~Gip~~~qrLif~Gk~L~d~~tL~~~~I~~~stl~lv-r~~ 677 (816)
.+..|+|+||+.+|+++.++|++++||.+||++|++++|+|+++|+|+|+|+.|+|+.+|++|||++|++|||+ |++
T Consensus 14 ~~~~m~i~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~i~l~~rlr 91 (91)
T 3v6c_B 14 PRGSMQIFVNTLTGTHITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLR 91 (91)
T ss_dssp CCCSEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTCBTGGGTCCTTCEEEEECCCC
T ss_pred CCCeEEEEEEeCCCCEEEEEECCCCCHHHHHHHHHhhhCCChhhEEEEECCeECCCcCcHHHCCCCCCCEEEEEEecC
Confidence 45689999999999999999999999999999999999999999999999999999999999999999999999 764
No 32
>1wgd_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; ENDPLASMIC reticulum stress, UBL domain; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.63 E-value=6.3e-16 Score=137.86 Aligned_cols=80 Identities=16% Similarity=0.266 Sum_probs=74.9
Q ss_pred CCceEEEEEecCCc--eEEEEcCCCCcHHHHHHHHhhhh--CCCCCCeEEEECCeecCCCcccccc--CCCCCCEEEEe-
Q psy15035 602 DNTLMINIKSNTGN--TVCVNLDPASDIRNVKEMIAPKL--GLKYEEVKIIFAGKELEDTTIISEC--DLGQQSILHAV- 674 (816)
Q Consensus 602 ~~~M~V~Vk~~~g~--t~~v~V~~~~TV~~LK~~I~~~~--Gip~~~qrLif~Gk~L~d~~tL~~~--~I~~~stl~lv- 674 (816)
+..|+|+||+++|+ ++.|+|++++||.+||++|++++ |+|+++|||+|+|+.|+|+.+|++| +|+++++|||+
T Consensus 5 ~~~m~i~Vk~~~~~~~~~~v~v~~~~TV~~lK~~I~~~~~~~i~~~~QrLi~~Gk~L~D~~tL~~~~~~i~~~~~i~lv~ 84 (93)
T 1wgd_A 5 SSGVTLLVKSPNQRHRDLELSGDRGWSVGHLKAHLSRVYPERPRPEDQRLIYSGKLLLDHQCLRDLLPKQEKRHVLHLVC 84 (93)
T ss_dssp SCCCEEEEECSSSSCCCEEEECCTTSCHHHHHHHHHHHSTTCCCTTTCEEEETTEECCSSSCHHHHSCSSSCSEEEEEEC
T ss_pred CcEEEEEEEeCCCCeEEEEEecCCCCcHHHHHHHHHHHhcCCCChHHeEEEECCEECcCcCCHHHHhcCCCCCCEEEEEe
Confidence 45799999999888 78888999999999999999999 9999999999999999999999999 99999999999
Q ss_pred eCCCCCC
Q psy15035 675 KSSPENN 681 (816)
Q Consensus 675 r~~gg~~ 681 (816)
|++||++
T Consensus 85 ~~~gg~~ 91 (93)
T 1wgd_A 85 NVKSGPS 91 (93)
T ss_dssp CCCCCCC
T ss_pred CCCCCCC
Confidence 9998843
No 33
>2kk8_A Uncharacterized protein AT4G05270; solution arabidopsis thaliana, uncharacterized putative protein, NESG, structural genomics; NMR {Arabidopsis thaliana}
Probab=99.63 E-value=4.3e-16 Score=136.33 Aligned_cols=72 Identities=14% Similarity=0.242 Sum_probs=70.4
Q ss_pred CceEEEEEecCCceEEEEcCCCCcHHHHHHHHhhhhCCCCCCeEEEECCee-cCCCccccccCCCCCCEEEEe
Q psy15035 603 NTLMINIKSNTGNTVCVNLDPASDIRNVKEMIAPKLGLKYEEVKIIFAGKE-LEDTTIISECDLGQQSILHAV 674 (816)
Q Consensus 603 ~~M~V~Vk~~~g~t~~v~V~~~~TV~~LK~~I~~~~Gip~~~qrLif~Gk~-L~d~~tL~~~~I~~~stl~lv 674 (816)
.-|+|+||+.+|+++.++|++++||++||++|+.++|+|+++|||+|+|+. |+|+.+|++|||++|++|+|+
T Consensus 9 ~~~~i~vk~l~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~lL~D~~tL~~y~I~~gs~i~lv 81 (84)
T 2kk8_A 9 SHMKFLVENLNGSSFELEVDYRDTLLVVKQKIERSQHIPVSKQTLIVDGIVILREDLTVEQCQIVPTSDIQLE 81 (84)
T ss_dssp CCEEEEEEETTSCEEEEEECTTSBHHHHHHHHHHHHTCCGGGEEEEETTEECCCSSSBHHHHTCCTTSCEEEE
T ss_pred CceEEEEEecCCcEEEEEECCCChHHHHHHHHHHHHCcChHHEEEEECCEEecCCcCCHHHcCCCCCCEEEEE
Confidence 469999999999999999999999999999999999999999999999999 999999999999999999998
No 34
>2faz_A Ubiquitin-like containing PHD and ring finger DOM protein 1; cell cycle, DNA damage, DNA repair, DNA-binding, ligase, Met binding, nuclear protein; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=99.63 E-value=7.7e-16 Score=132.38 Aligned_cols=74 Identities=12% Similarity=0.354 Sum_probs=70.4
Q ss_pred CceEEEEEecCCceE-EEE-cCCCCcHHHHHHHHhhhhCCCCCCeEEEECCeecCCCccccccCCCCCCEEEEe-eC
Q psy15035 603 NTLMINIKSNTGNTV-CVN-LDPASDIRNVKEMIAPKLGLKYEEVKIIFAGKELEDTTIISECDLGQQSILHAV-KS 676 (816)
Q Consensus 603 ~~M~V~Vk~~~g~t~-~v~-V~~~~TV~~LK~~I~~~~Gip~~~qrLif~Gk~L~d~~tL~~~~I~~~stl~lv-r~ 676 (816)
+.|+|+||+.+|+++ +++ |++++||++||++|+.++|+|+++|+|+|+|+.|+|+.+|++|||++|++||++ |+
T Consensus 1 g~m~i~Vk~~~g~~~~~l~~v~~~~tv~~lK~~i~~~~gip~~~qrL~~~g~~L~d~~tL~~~~i~~g~~i~l~~r~ 77 (78)
T 2faz_A 1 GSMWIQVRTMDGRQTHTVDSLSRLTKVEELRRKIQELFHVEPGLQRLFYRGKQMEDGHTLFDYEVRLNDTIQLLVRQ 77 (78)
T ss_dssp -CEEEEEEETTSSCEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTCBTTTTTCCTTCEEEEEECC
T ss_pred CcEEEEEEECCCCEEEEEeccCCCCCHHHHHHHHHHHHCcChhhEEEEECCEECCCCCCHHHcCCCCCCEEEEEEeC
Confidence 369999999999985 999 999999999999999999999999999999999999999999999999999999 64
No 35
>2l7r_A Ubiquitin-like protein FUBI; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=99.63 E-value=5.4e-16 Score=138.38 Aligned_cols=77 Identities=16% Similarity=0.345 Sum_probs=71.5
Q ss_pred CCCceEEEEEecCCceEEEEcCCCCcHHHHHHHHhhhhCCCCCCeEEEECCeecCCCccccccCCCCCCEEEEe-eCCCC
Q psy15035 601 PDNTLMINIKSNTGNTVCVNLDPASDIRNVKEMIAPKLGLKYEEVKIIFAGKELEDTTIISECDLGQQSILHAV-KSSPE 679 (816)
Q Consensus 601 ~~~~M~V~Vk~~~g~t~~v~V~~~~TV~~LK~~I~~~~Gip~~~qrLif~Gk~L~d~~tL~~~~I~~~stl~lv-r~~gg 679 (816)
++..|+|+||+ |+++.++|++++||++||++|++++|+|+++|+|+|+|+.|+|+.+|++|+|+++++|+|+ |++||
T Consensus 16 ~~~~m~I~Vk~--g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~y~I~~gstI~lv~rl~GG 93 (93)
T 2l7r_A 16 PRGSMQLFVRA--QELHTFEVTGQETVAQIKAHVASLEGIAPEDQVVLLAGAPLEDEATLGQCGVEALTTLEVAGRMLGG 93 (93)
T ss_dssp ----CEEEEES--SSEEEEECCSSCBHHHHHHHHHHHHTCCGGGCEEEETTEECCTTSBHHHHTCCSSCEEEEECCCCCC
T ss_pred CCCcEEEEEEC--CCEEEEEeCCCCcHHHHHHHHHHHhCcChhHEEEEECCEECCCCCcHHHCCCCCCCEEEEEEecCCC
Confidence 55679999999 8999999999999999999999999999999999999999999999999999999999999 99987
No 36
>2lxa_A Ubiquitin-like protein MDY2; ubiquitin-like domain, protein-protein interaction, SGT2 BIN domain, GET pathway, protein binding; NMR {Saccharomyces cerevisiae}
Probab=99.62 E-value=3e-16 Score=138.01 Aligned_cols=71 Identities=18% Similarity=0.377 Sum_probs=67.6
Q ss_pred ceEEEEEecCCceEEEEcC--CCCcHHHHHHHH-hhhhCCCCCCeEEEECCeecCCCccccccCC-CCCCEEEEe
Q psy15035 604 TLMINIKSNTGNTVCVNLD--PASDIRNVKEMI-APKLGLKYEEVKIIFAGKELEDTTIISECDL-GQQSILHAV 674 (816)
Q Consensus 604 ~M~V~Vk~~~g~t~~v~V~--~~~TV~~LK~~I-~~~~Gip~~~qrLif~Gk~L~d~~tL~~~~I-~~~stl~lv 674 (816)
.|+|+||+++|++++++|+ +++||.+||++| +.+.|+|+++|||||+|+.|+|+.||++|+| ++|++|+|+
T Consensus 1 mmqI~VKtl~g~~~~i~v~v~~~~TV~~lK~~I~~~~~gip~~~QrLi~~Gk~L~D~~tL~~y~I~~~~stl~v~ 75 (87)
T 2lxa_A 1 MVHLTLKKIQAPKFSIEHDFSPSDTILQIKQHLISEEKASHISEIKLLLKGKVLHDNLFLSDLKVTPANSTITVM 75 (87)
T ss_dssp CCEEEEEECSSSCEECCEECCTTCBHHHHHHHHHHTTSCSSSTTEEEEETTEECCTTCBHHHHCCCGGGCEEEEE
T ss_pred CEEEEEEcCCCCEEEEEEcCCCCCcHHHHHHHHHHHhcCCChHHEEEEECCEECcCcCCHHHcCCCCCCCEEEEE
Confidence 3899999999999988755 999999999999 9999999999999999999999999999999 699999999
No 37
>1wgh_A Ubiquitin-like 3, HCG-1 protein; ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.62 E-value=2.5e-15 Score=138.83 Aligned_cols=83 Identities=12% Similarity=0.251 Sum_probs=73.3
Q ss_pred CCCceEEEEEecCCceEEEEcCCCCcHHHHHHHHhh------hhCC--CCCCeEEEECCeecCCCccccccCCCCC--CE
Q psy15035 601 PDNTLMINIKSNTGNTVCVNLDPASDIRNVKEMIAP------KLGL--KYEEVKIIFAGKELEDTTIISECDLGQQ--SI 670 (816)
Q Consensus 601 ~~~~M~V~Vk~~~g~t~~v~V~~~~TV~~LK~~I~~------~~Gi--p~~~qrLif~Gk~L~d~~tL~~~~I~~~--st 670 (816)
....|+|+||+++|++++++|++++||++||++|+. ++|+ |+++|||||+||.|+|+.||++|+|..+ ++
T Consensus 13 ~~~~m~I~vKtl~G~t~~lev~~s~TV~~lK~kI~~~~p~dwke~~p~p~~qqrLIy~GK~LeD~~TL~~y~I~~~~~~t 92 (116)
T 1wgh_A 13 PADMINLRLILVSGKTKEFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLIYQGRFLHGNVTLGALKLPFGKTTV 92 (116)
T ss_dssp CSSSEEEEEECSSSCEEEEEECTTCBHHHHHHHHHHSSSCCSSCCCCCCTTTEEEEETTEEECSSCBTTTTTCCSSCEEE
T ss_pred CCCeEEEEEEeCCCCEEEEEECCcCHHHHHHHHHHHhcccccccCCCCChHHEEEEECCcCCCCCCcHHHcCCCCCCceE
Confidence 445799999999999999999999999999999999 6675 6999999999999999999999999765 68
Q ss_pred EEEe-eCCCCCCcC
Q psy15035 671 LHAV-KSSPENNKI 683 (816)
Q Consensus 671 l~lv-r~~gg~~~~ 683 (816)
|||+ |+.+..++.
T Consensus 93 lhLvlr~~~~~~~~ 106 (116)
T 1wgh_A 93 MHLVARETLPEPNS 106 (116)
T ss_dssp EEEEECSSCSSSCC
T ss_pred EEEEccCCCCCCCc
Confidence 9999 877654443
No 38
>1v2y_A 3300001G02RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.62 E-value=4.5e-16 Score=141.25 Aligned_cols=81 Identities=14% Similarity=0.227 Sum_probs=74.0
Q ss_pred CCCceEEEEEecCCceEEEEcCCCCcHHHHHHHHhhhhCCCC---------------CCeEEEECCeecC-CCccccccC
Q psy15035 601 PDNTLMINIKSNTGNTVCVNLDPASDIRNVKEMIAPKLGLKY---------------EEVKIIFAGKELE-DTTIISECD 664 (816)
Q Consensus 601 ~~~~M~V~Vk~~~g~t~~v~V~~~~TV~~LK~~I~~~~Gip~---------------~~qrLif~Gk~L~-d~~tL~~~~ 664 (816)
....|+|+||+++|++++|+|++++||++||++|++++|+|+ ++|+|+|+|+.|. |+.||++||
T Consensus 4 ~~~~M~I~Vk~l~g~~~~v~V~~~~TV~dLK~~I~~~~~i~~~~q~g~~~isw~~~w~q~~Li~~Gk~L~dD~~tL~dyg 83 (105)
T 1v2y_A 4 GSSGMTVRVCKMDGEVMPVVVVQNATVLDLKKAIQRYVQLKQEREGGVQHISWSYVWRTYHLTSAGEKLTEDRKKLRDYG 83 (105)
T ss_dssp CCCSEEEEEECSSSCEEEEEECTTCBHHHHHHHHHHHHHHHHHHTTCCCCCCHHHHHTTEEEESSSCEECCSSSBHHHHT
T ss_pred CCCcEEEEEEecCCCEEEEEECCCChHHHHHHHHHHHhCCCcccccCcceeeeeecceeEEEEeCCcCccCCcCCHHHcC
Confidence 345799999999999999999999999999999999999988 4679999999996 679999999
Q ss_pred CCCCCEEEEe-eCCCCCC
Q psy15035 665 LGQQSILHAV-KSSPENN 681 (816)
Q Consensus 665 I~~~stl~lv-r~~gg~~ 681 (816)
|++|++||++ |++|...
T Consensus 84 I~~g~~l~lv~~lr~~~~ 101 (105)
T 1v2y_A 84 IRNRDEVSFIKKLGQKSG 101 (105)
T ss_dssp CCSSEEEEEEECSCSCCC
T ss_pred CCCCCEEEEEehhccCCC
Confidence 9999999999 8887643
No 39
>4eew_A Large proline-rich protein BAG6; ubiquitin-like fold, GP78-binding, chaperone; 1.30A {Homo sapiens}
Probab=99.61 E-value=9.9e-16 Score=134.96 Aligned_cols=73 Identities=21% Similarity=0.403 Sum_probs=70.0
Q ss_pred CCCceEEEEEecCCceEEEEcCCCCcHHHHHHHHhhhhCCCCCCeEEEECCeecCCCccccccCCCCCCEEEEe
Q psy15035 601 PDNTLMINIKSNTGNTVCVNLDPASDIRNVKEMIAPKLGLKYEEVKIIFAGKELEDTTIISECDLGQQSILHAV 674 (816)
Q Consensus 601 ~~~~M~V~Vk~~~g~t~~v~V~~~~TV~~LK~~I~~~~Gip~~~qrLif~Gk~L~d~~tL~~~~I~~~stl~lv 674 (816)
.+..|+|+||+.+|+++.++|++++||++||++|++++|+|+++|||+|+|+.|+|+.+|++||| +|++|||+
T Consensus 14 ~~~~m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrLi~~Gk~L~D~~tL~~~~i-~g~~i~lv 86 (88)
T 4eew_A 14 EPDSLEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLIYQGRVLQDDKKLQEYNV-GGKVIHLV 86 (88)
T ss_dssp -CCEEEEEEEETTSCEEEEEEETTCBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBGGGGTC-TTEEEEEE
T ss_pred CCCeEEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEECCEECCCCCcHHHcCC-CCcEEEEE
Confidence 45679999999999999999999999999999999999999999999999999999999999999 89999998
No 40
>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A
Probab=99.61 E-value=1.7e-15 Score=148.42 Aligned_cols=80 Identities=20% Similarity=0.297 Sum_probs=75.2
Q ss_pred CCCceEEEEEecCCceEEEEcCCCCcHHHHHHHHhhhhCCCCCCeEEEECCeecCCCccccccCCCCCCEEEEe-eCCCC
Q psy15035 601 PDNTLMINIKSNTGNTVCVNLDPASDIRNVKEMIAPKLGLKYEEVKIIFAGKELEDTTIISECDLGQQSILHAV-KSSPE 679 (816)
Q Consensus 601 ~~~~M~V~Vk~~~g~t~~v~V~~~~TV~~LK~~I~~~~Gip~~~qrLif~Gk~L~d~~tL~~~~I~~~stl~lv-r~~gg 679 (816)
.+..|+|+||+.+|++++++|++++||++||++|+.++|+|+++|+|+|+|+.|+|+.||++|+|++|++|||+ |++||
T Consensus 78 ~~~~m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~G~~L~d~~tL~~y~i~~g~~l~l~~rl~GG 157 (159)
T 3rt3_B 78 SDEPLSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLEDQLPLGEYGLKPLSTVFMNLRLRGG 157 (159)
T ss_dssp CCCCEEEEEECTTSCEEEEEECTTSBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBGGGGTCCTTCEEEEEECCC--
T ss_pred CCCcEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCHHHEEEEECCeecCCCCCHHHcCCCCCCEEEEEEecCCC
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999 99998
Q ss_pred C
Q psy15035 680 N 680 (816)
Q Consensus 680 ~ 680 (816)
.
T Consensus 158 ~ 158 (159)
T 3rt3_B 158 G 158 (159)
T ss_dssp -
T ss_pred C
Confidence 4
No 41
>3vdz_A Ubiquitin-40S ribosomal protein S27A; gadolinium, MRI contrast agent, peptide-based contrast agent lanthanide binding TAG; 2.40A {Synthetic construct} PDB: 2ojr_A
Probab=99.61 E-value=1.5e-15 Score=140.01 Aligned_cols=77 Identities=34% Similarity=0.559 Sum_probs=74.1
Q ss_pred CceEEEEEecCCceEEEEcCCCCcHHHHHHHHhhhhCCCCCCeEEEECCeecCCCccccccCCCCCCEEEEe-eCCCC
Q psy15035 603 NTLMINIKSNTGNTVCVNLDPASDIRNVKEMIAPKLGLKYEEVKIIFAGKELEDTTIISECDLGQQSILHAV-KSSPE 679 (816)
Q Consensus 603 ~~M~V~Vk~~~g~t~~v~V~~~~TV~~LK~~I~~~~Gip~~~qrLif~Gk~L~d~~tL~~~~I~~~stl~lv-r~~gg 679 (816)
..|+|+||+.+|+++.++|++++||.+||++|+.++|+|+++|||+|+|+.|+|+.+|++|+|+++++|||+ |++||
T Consensus 34 ~~m~I~Vk~~~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~~gI~~gs~I~l~~rl~GG 111 (111)
T 3vdz_A 34 LAMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 111 (111)
T ss_dssp GCEEEEEECSSSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTTTTTCCTTCEEEEEECCCC-
T ss_pred ccEEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHhCCChHHEEEEECCEECCCCCcHHHCCCCCCCEEEEEEecCCC
Confidence 469999999999999999999999999999999999999999999999999999999999999999999999 99987
No 42
>1uel_A HHR23B, UV excision repair protein RAD23 homolog B; UBL, UIM, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.61 E-value=2.9e-15 Score=134.15 Aligned_cols=70 Identities=23% Similarity=0.452 Sum_probs=68.7
Q ss_pred eEEEEEecCCceEEEEcCCCCcHHHHHHHHhhh---hCCCCCCeEEEECCeecCCCccccccCCCCCCEEEEe
Q psy15035 605 LMINIKSNTGNTVCVNLDPASDIRNVKEMIAPK---LGLKYEEVKIIFAGKELEDTTIISECDLGQQSILHAV 674 (816)
Q Consensus 605 M~V~Vk~~~g~t~~v~V~~~~TV~~LK~~I~~~---~Gip~~~qrLif~Gk~L~d~~tL~~~~I~~~stl~lv 674 (816)
|+|+||+.+|+++.++|++++||++||++|+.. +|+|+++|+|+|+|+.|+|+.+|++|||++|++|+++
T Consensus 1 M~I~Vk~~~g~~~~~~v~~~~TV~~LK~~I~~~~~~~gip~~~qrLi~~Gk~L~D~~tL~~ygI~~g~~i~l~ 73 (95)
T 1uel_A 1 MQVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALKEYKIDEKNFVVVM 73 (95)
T ss_dssp CEEEEEETTCCEEEEECCTTSBHHHHHHHHHHHHCTTTCCTTTEEEEETTEECCTTSBGGGGTCCSSSEEEEE
T ss_pred CEEEEEeCCCCEEEEEECCCCHHHHHHHHHHhhcccCCCChhhEEEEECCEECCCcCcHHHCCCCCCCEEEEE
Confidence 899999999999999999999999999999999 8999999999999999999999999999999999999
No 43
>4a20_A Ubiquitin-like protein MDY2; protein binding, GET-pathway, tail-anchored proteins; 1.78A {Saccharomyces cerevisiae} PDB: 2lxc_A 4goc_A
Probab=99.60 E-value=2e-15 Score=135.68 Aligned_cols=74 Identities=16% Similarity=0.377 Sum_probs=68.6
Q ss_pred CCCceEEEEEecCCceEEE--EcCCCCcHHHHHHHH-hhhhCCCCCCeEEEECCeecCCCccccccCC-CCCCEEEEe
Q psy15035 601 PDNTLMINIKSNTGNTVCV--NLDPASDIRNVKEMI-APKLGLKYEEVKIIFAGKELEDTTIISECDL-GQQSILHAV 674 (816)
Q Consensus 601 ~~~~M~V~Vk~~~g~t~~v--~V~~~~TV~~LK~~I-~~~~Gip~~~qrLif~Gk~L~d~~tL~~~~I-~~~stl~lv 674 (816)
.+.+|+|+||+++|++|++ +|++++||++||++| +++.|+|+++|||+|+|+.|+|+.+|++|+| ++|++|+++
T Consensus 16 ~~~~m~I~VKtl~g~~~~i~v~v~~~~TV~~lK~~I~~~~~gip~~~QrLi~~Gk~L~D~~tL~dy~I~~~g~ti~lm 93 (98)
T 4a20_A 16 DNAAVHLTLKKIQAPKFSIEHDFSPSDTILQIKQHLISEEKASHISEIKLLLKGKVLHDNLFLSDLKVTPANSTITVM 93 (98)
T ss_dssp --CCEEEEEEECSSSCEEEEEEECTTCBHHHHHHHHHHTTSCSCGGGEEEEETTEEECTTCBGGGSCCBTTBCEEEEE
T ss_pred CCCCEEEEEEcCCCCEEEEEEecCCCChHHHHHHHHHHHhcCCChhhEEEEECCEECcCcCCHHHcCcCCCCCEEEEE
Confidence 4678999999999998777 566999999999999 9999999999999999999999999999999 999999999
No 44
>3m62_B UV excision repair protein RAD23; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=99.60 E-value=1.3e-15 Score=139.18 Aligned_cols=70 Identities=24% Similarity=0.465 Sum_probs=68.4
Q ss_pred eEEEEEecCCceEEEEcCCCCcHHHHHHHHhhhhCCCCCCeEEEECCeecCCCccccccCCCCCCEEEEe
Q psy15035 605 LMINIKSNTGNTVCVNLDPASDIRNVKEMIAPKLGLKYEEVKIIFAGKELEDTTIISECDLGQQSILHAV 674 (816)
Q Consensus 605 M~V~Vk~~~g~t~~v~V~~~~TV~~LK~~I~~~~Gip~~~qrLif~Gk~L~d~~tL~~~~I~~~stl~lv 674 (816)
|+|+||+.+|+++.++|++++||.+||++|+.++|+|+++|||+|+|+.|+|+.+|++|||++|++|+|+
T Consensus 2 m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~~~i~~g~~i~lv 71 (106)
T 3m62_B 2 VSLTFKNFKKEKVPLDLEPSNTILETKTKLAQSISCEESQIKLIYSGKVLQDSKTVSECGLKDGDQVVFM 71 (106)
T ss_dssp -CEEEECTTCCEEEECCCTTSBHHHHHHHHHHTTTSCGGGCEEEETTEECCTTSBTTTTTCCTTCEEEEE
T ss_pred EEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCChhhEEEEECCEECCCcCCHHHcCCCCCCEEEEE
Confidence 8999999999999999999999999999999999999999999999999999999999999999999999
No 45
>1yx5_B Ubiquitin; proteasome, UIM, hydrolase; NMR {Homo sapiens} SCOP: d.15.1.1 PDB: 1yx6_B
Probab=99.60 E-value=2.6e-15 Score=135.14 Aligned_cols=76 Identities=34% Similarity=0.578 Sum_probs=73.3
Q ss_pred eEEEEEecCCceEEEEcCCCCcHHHHHHHHhhhhCCCCCCeEEEECCeecCCCccccccCCCCCCEEEEe-eCCCCC
Q psy15035 605 LMINIKSNTGNTVCVNLDPASDIRNVKEMIAPKLGLKYEEVKIIFAGKELEDTTIISECDLGQQSILHAV-KSSPEN 680 (816)
Q Consensus 605 M~V~Vk~~~g~t~~v~V~~~~TV~~LK~~I~~~~Gip~~~qrLif~Gk~L~d~~tL~~~~I~~~stl~lv-r~~gg~ 680 (816)
|+|+||+.+|+++.++|++++||.+||++|++.+|+|+++|+|+|+|+.|+|+.+|++|||.+|++|+++ |.+||.
T Consensus 1 M~I~Vk~~~g~~~~~~v~~~~TV~~LK~~I~~~~gi~~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~i~l~~~~~gG~ 77 (98)
T 1yx5_B 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGR 77 (98)
T ss_dssp CEEEEEETTSCEEEEECCTTCBHHHHHHHHHHHTCCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEECCCCC-
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcChhhEEEEECCEECCCCCCHHHcCCCCCCEEEEEEeCCCCC
Confidence 8999999999999999999999999999999999999999999999999999999999999999999999 888874
No 46
>1se9_A Ubiquitin family; ubiquitin-like, cell-free, wheat GERM, structural genomics, protein structure initiative, CESG; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=99.60 E-value=3.1e-15 Score=139.48 Aligned_cols=81 Identities=22% Similarity=0.330 Sum_probs=74.3
Q ss_pred CCCceEEEEEecCCceE-EEEcCCCCcHHHHHHHH-----hhhhCCCC--CCeEEEECCeecCCCccccccCCCCC----
Q psy15035 601 PDNTLMINIKSNTGNTV-CVNLDPASDIRNVKEMI-----APKLGLKY--EEVKIIFAGKELEDTTIISECDLGQQ---- 668 (816)
Q Consensus 601 ~~~~M~V~Vk~~~g~t~-~v~V~~~~TV~~LK~~I-----~~~~Gip~--~~qrLif~Gk~L~d~~tL~~~~I~~~---- 668 (816)
....|+|+||+.+|+.+ ++++++++||++||++| +.++|+|+ ++|||||+||.|+|+.||++|+|+.+
T Consensus 13 ~~~~~~i~~kt~~G~~i~~l~v~psdTV~~lK~kI~~~~p~dkegiP~~~~qQrLIy~GK~LeD~~TLsdy~I~~~~~~~ 92 (126)
T 1se9_A 13 VHNQLEIKFRLTDGSDIGPKAFPDATTVSALKETVISEWPREKENGPKTVKEVKLISAGKVLENSKTVKDYRSPVSNLAG 92 (126)
T ss_dssp SCCCEEEEEEETTSCEEEEEEECTTCBHHHHHHHHHHHSCTTCSSSCCSGGGEEEEETTEECCTTSBGGGGSCCTTSCTT
T ss_pred hcccEEEEEEECCCCEEEeeecCccCHHHHHHHHHHhhcccccccCCCChhhEEEEECCeECcCCCcHHHcCCCcCCccC
Confidence 45689999999999988 79999999999999999 67789997 89999999999999999999999988
Q ss_pred --CEEEEe-eCCCCCC
Q psy15035 669 --SILHAV-KSSPENN 681 (816)
Q Consensus 669 --stl~lv-r~~gg~~ 681 (816)
+|+||+ |++||.+
T Consensus 93 ~v~tmhlVlrl~g~~k 108 (126)
T 1se9_A 93 AVTTMHVIIQAPVTEK 108 (126)
T ss_dssp CCEEEEEEECCCSSCC
T ss_pred CcEEEEEEeccCCccc
Confidence 789999 9888744
No 47
>2xzm_9 RPS31E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_9
Probab=99.60 E-value=1.5e-16 Score=158.28 Aligned_cols=73 Identities=15% Similarity=0.292 Sum_probs=1.5
Q ss_pred eEEEEEecCCceEEEEcCCCCcHHHHHHHHhhhhCCCCCCeEEEECCeecCCCccccccCCCCCCEEEEe-eCCCCCCc
Q psy15035 605 LMINIKSNTGNTVCVNLDPASDIRNVKEMIAPKLGLKYEEVKIIFAGKELEDTTIISECDLGQQSILHAV-KSSPENNK 682 (816)
Q Consensus 605 M~V~Vk~~~g~t~~v~V~~~~TV~~LK~~I~~~~Gip~~~qrLif~Gk~L~d~~tL~~~~I~~~stl~lv-r~~gg~~~ 682 (816)
|+||||+++|++++++|++++||.+||++|+..+|||+++|+|||+|++|+|+.||+ +++||||+ |++||+.+
T Consensus 1 MqI~VKtL~GktitLeV~~sdTV~~LK~kI~~keGIP~~qQRLIf~GK~LeD~~TLs-----~~STLhLvlRLrGG~~k 74 (189)
T 2xzm_9 1 MQVQVKTLEGETKIYTLEQGTSVLDLKSQISQDMGFEIDMMTLVNNGFIAPNTELVT-----DDVTYYLSLKLLGGKKK 74 (189)
T ss_dssp ----------------------------------------------------------------------------CCC
T ss_pred CEEEEEcCCCCEEEEEECCcChHHHHHHHHHHHhCcChhHEEEEecCeECCCCCccc-----CCCEEEEEEecCCCccc
Confidence 899999999999999999999999999999999999999999999999999999999 89999999 99999553
No 48
>2dzi_A Ubiquitin-like protein 4A; GDX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.60 E-value=2.7e-15 Score=129.68 Aligned_cols=76 Identities=21% Similarity=0.430 Sum_probs=72.6
Q ss_pred CCCceEEEEEecCCceEEEEcCCCCcHHHHHHHHhhhhCCCCCCeEEEECCeecCCCccccccCCCCCCEEEEe-eC
Q psy15035 601 PDNTLMINIKSNTGNTVCVNLDPASDIRNVKEMIAPKLGLKYEEVKIIFAGKELEDTTIISECDLGQQSILHAV-KS 676 (816)
Q Consensus 601 ~~~~M~V~Vk~~~g~t~~v~V~~~~TV~~LK~~I~~~~Gip~~~qrLif~Gk~L~d~~tL~~~~I~~~stl~lv-r~ 676 (816)
.+..|+|+||+.+|+++.++|++++||++||++|++.+|+|+++|+|+|+|+.|+|+.+|++|||++|++||++ |+
T Consensus 4 ~~~~m~i~vk~~~g~~~~~~v~~~~tV~~LK~~i~~~~~i~~~~qrL~~~gk~L~d~~tL~~~~i~~g~~i~l~~~~ 80 (81)
T 2dzi_A 4 GSSGMQLTVKALQGRECSLQVPEDELVSTLKQLVSEKLNVPVRQQRLLFKGKALADGKRLSDYSIGPNSKLNLVVKP 80 (81)
T ss_dssp SSSSEEEEEEETTSCEEEEEECSSCBHHHHHHHHHHHTCCCTTTCEEEETTEECCTTSBGGGGTCCSSBCCEEECCC
T ss_pred CCCcEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcCHHHEEEEECCeECCCCCcHHHcCCCCCCEEEEEEeC
Confidence 35689999999999999999999999999999999999999999999999999999999999999999999999 65
No 49
>3l0w_B Monoubiquitinated proliferating cell nuclear antigen, proliferating cell nuclear antigen; replication, DNA damage, DNA repair; 2.80A {Saccharomyces cerevisiae} PDB: 3l10_B
Probab=99.59 E-value=2.8e-15 Score=148.35 Aligned_cols=78 Identities=32% Similarity=0.538 Sum_probs=73.6
Q ss_pred eEEEEEecCCceEEEEcCCCCcHHHHHHHHhhhhCCCCCCeEEEECCeecCCCccccccCCCCCCEEEEe-eCCCCCCc
Q psy15035 605 LMINIKSNTGNTVCVNLDPASDIRNVKEMIAPKLGLKYEEVKIIFAGKELEDTTIISECDLGQQSILHAV-KSSPENNK 682 (816)
Q Consensus 605 M~V~Vk~~~g~t~~v~V~~~~TV~~LK~~I~~~~Gip~~~qrLif~Gk~L~d~~tL~~~~I~~~stl~lv-r~~gg~~~ 682 (816)
|+|+||+.+|+++.++|++++||.+||++|+.++|+|+++|||+|+|+.|+|+.+|++|+|++|++|||+ |++||++.
T Consensus 1 MqI~Vk~~~Gk~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~y~I~~gstI~Lvlrl~GG~k~ 79 (169)
T 3l0w_B 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGGGE 79 (169)
T ss_dssp CEEEEEETTSCEEEEECCTTCBHHHHHHHHHHHHCCCTTTEEEEETTEECCTTSBGGGGTCCTTCEEEEEECCCC---C
T ss_pred CEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHHCcCHHHEEEEECCccccCcCcHHHcCCCCCCEEEEEEEecccccc
Confidence 8999999999999999999999999999999999999999999999999999999999999999999999 99998554
No 50
>1wju_A NEDD8 ultimate buster-1; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.59 E-value=2.4e-15 Score=134.83 Aligned_cols=74 Identities=15% Similarity=0.165 Sum_probs=67.5
Q ss_pred EEEEEecC----CceEEEEcCCCCcHHHHHHHHhhhhCCCCCCeEEEECCeecCCCccccccCCCCCCEEEEeeCCCC
Q psy15035 606 MINIKSNT----GNTVCVNLDPASDIRNVKEMIAPKLGLKYEEVKIIFAGKELEDTTIISECDLGQQSILHAVKSSPE 679 (816)
Q Consensus 606 ~V~Vk~~~----g~t~~v~V~~~~TV~~LK~~I~~~~Gip~~~qrLif~Gk~L~d~~tL~~~~I~~~stl~lvr~~gg 679 (816)
.|.|+..+ +++++++|++++||.+||++|++++|+|+++|||||+||+|+|+.||++|+|+++++|++++++|.
T Consensus 17 ti~V~~~~~~~~~~~~~lev~~~~TV~~lK~kI~~k~gip~~qQrLI~~GKiL~D~~TL~~y~I~~gsti~vl~lrg~ 94 (100)
T 1wju_A 17 TIEVFLPPRLKKDRKNLLETRLHITGRELRSKIAETFGLQENYIKIVINKKQLQLGKTLEEQGVAHNVKAMVLELKQS 94 (100)
T ss_dssp EEEEECCTTTCCSSSEEEEEESSSBHHHHHHHHHHHTTCCSTTCEEEETTEECCTTSBHHHHTCCSSEEEEEECCCCC
T ss_pred EEEEEecCCCCCCcEEEEEeCCcCHHHHHHHHHHHHHCcCHHHeEEEeCCeECCCCCcHHHcCCCCCCEEEEEEECCC
Confidence 45555555 779999999999999999999999999999999999999999999999999999999987788764
No 51
>1we6_A Splicing factor, putative; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=99.59 E-value=2.6e-15 Score=138.38 Aligned_cols=81 Identities=15% Similarity=0.246 Sum_probs=77.0
Q ss_pred CCCceEEEEEec---CCceEEEEcCC-CCcHHHHHHHHhhhhCCCCCCeEEEECCeecCCCccccccCCCCCCEEEEe-e
Q psy15035 601 PDNTLMINIKSN---TGNTVCVNLDP-ASDIRNVKEMIAPKLGLKYEEVKIIFAGKELEDTTIISECDLGQQSILHAV-K 675 (816)
Q Consensus 601 ~~~~M~V~Vk~~---~g~t~~v~V~~-~~TV~~LK~~I~~~~Gip~~~qrLif~Gk~L~d~~tL~~~~I~~~stl~lv-r 675 (816)
.+..|+|+|+++ +|+++.++|++ ++||.+||++|+..+|+|+++|+|+|+|+.|+|+.+|++|+|.+|++|||+ |
T Consensus 24 ~~~~i~i~Vk~~~~~~g~~~~l~v~~l~~TV~~LK~~I~~~~gip~~~QrL~~~Gk~L~D~~tL~~y~I~~g~~l~l~~r 103 (111)
T 1we6_A 24 HPGPATIRVSKPNENDGQFMEITVQSLSENVGSLKEKIAGEIQIPANKQKLSGKAGFLKDNMSLAHYNVGAGEILTLSLR 103 (111)
T ss_dssp CCSCEEEEECCTTCSSSCCEEEEESCSSSBHHHHHHHHHHHTTCCTTTSEEECSSSBCCTTSBTTTTTCSSSCEEEEECS
T ss_pred CCCcEEEEEEecccCCCcEEEEEecCCCCcHHHHHHHHHHHHCCCHHHeEEEECCEECCCCCcHHHCCCCCCCEEEEEEE
Confidence 456799999998 89999999998 999999999999999999999999999999999999999999999999999 9
Q ss_pred CCCCCC
Q psy15035 676 SSPENN 681 (816)
Q Consensus 676 ~~gg~~ 681 (816)
++||+.
T Consensus 104 ~~GGk~ 109 (111)
T 1we6_A 104 ERSGPS 109 (111)
T ss_dssp SCCSSC
T ss_pred cCCCCC
Confidence 999864
No 52
>2wyq_A HHR23A, UV excision repair protein RAD23 homolog A; DNA binding protein, DNA excision repair, proteasomal degrad polyubiquitin; 1.65A {Homo sapiens} PDB: 1p98_A 1p9d_U 1p1a_A
Probab=99.59 E-value=4.3e-15 Score=129.78 Aligned_cols=73 Identities=21% Similarity=0.370 Sum_probs=70.2
Q ss_pred CCceEEEEEecCCceEEEEcCCCCcHHHHHHHHhhh---hCCCCCCeEEEECCeecCCCccccccCCCCCCEEEEe
Q psy15035 602 DNTLMINIKSNTGNTVCVNLDPASDIRNVKEMIAPK---LGLKYEEVKIIFAGKELEDTTIISECDLGQQSILHAV 674 (816)
Q Consensus 602 ~~~M~V~Vk~~~g~t~~v~V~~~~TV~~LK~~I~~~---~Gip~~~qrLif~Gk~L~d~~tL~~~~I~~~stl~lv 674 (816)
+..|+|+||+.+|+++.++|++++||++||++|+.. +|+|+++|+|+|+|+.|+|+.+|++|||++|++||++
T Consensus 3 ~~~m~i~vk~~~g~~~~~~v~~~~TV~~lK~~i~~~~~~~gip~~~qrLi~~Gk~L~D~~tL~~~~i~~g~~i~l~ 78 (85)
T 2wyq_A 3 PMAVTITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDYRIDEKNFVVVM 78 (85)
T ss_dssp -CCEEEEEEETTSCEEEEEECTTSBHHHHHHHHHHHHCTTTCCGGGEEEEETTEECCTTSBGGGGCCCTTSEEEEE
T ss_pred CceEEEEEEECCCCEEEEEECCCCCHHHHHHHHHhhccccCCCHHHeEEEECCEECcCCCCHHHcCCCCCCEEEEE
Confidence 457999999999999999999999999999999998 8999999999999999999999999999999999999
No 53
>3b1l_X E3 ubiquitin-protein ligase parkin; proteasome, ALFA-beta-protein; 1.85A {Mus musculus} PDB: 1mg8_A 2zeq_A 2knb_A 1iyf_A
Probab=99.36 E-value=1.2e-16 Score=136.66 Aligned_cols=74 Identities=32% Similarity=0.606 Sum_probs=72.1
Q ss_pred eEEEEEecCCceEEEEcCCCCcHHHHHHHHhhhhCCCCCCeEEEECCeecCCCccccccCCCCCCEEEEe-eCCC
Q psy15035 605 LMINIKSNTGNTVCVNLDPASDIRNVKEMIAPKLGLKYEEVKIIFAGKELEDTTIISECDLGQQSILHAV-KSSP 678 (816)
Q Consensus 605 M~V~Vk~~~g~t~~v~V~~~~TV~~LK~~I~~~~Gip~~~qrLif~Gk~L~d~~tL~~~~I~~~stl~lv-r~~g 678 (816)
|+|+||+.+|+++.++|++++||++||++|+..+|+|+++|+|+|+|+.|+|+.+|++|||++|++||++ |++|
T Consensus 1 M~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~qrL~~~gk~L~d~~tL~~~~i~~g~~i~l~~rlrg 75 (76)
T 3b1l_X 1 MIVFVRFNSSYGFPVEVDSDTSILQLKEVVAKQQGVPADQLRVIFAGKELPNHLTVQNCDLEQQSIVHIVQRPRR 75 (76)
Confidence 8999999999999999999999999999999999999999999999999999999999999999999999 8886
No 54
>2ojr_A Ubiquitin; lanthide-binding TAG, terbium, TB, SAD phasing, protein binding; 2.60A {Homo sapiens}
Probab=99.58 E-value=6.7e-15 Score=135.64 Aligned_cols=78 Identities=33% Similarity=0.535 Sum_probs=74.5
Q ss_pred CCceEEEEEecCCceEEEEcCCCCcHHHHHHHHhhhhCCCCCCeEEEECCeecCCCccccccCCCCCCEEEEe-eCCCC
Q psy15035 602 DNTLMINIKSNTGNTVCVNLDPASDIRNVKEMIAPKLGLKYEEVKIIFAGKELEDTTIISECDLGQQSILHAV-KSSPE 679 (816)
Q Consensus 602 ~~~M~V~Vk~~~g~t~~v~V~~~~TV~~LK~~I~~~~Gip~~~qrLif~Gk~L~d~~tL~~~~I~~~stl~lv-r~~gg 679 (816)
..+|+|+||+.+|+++.++|++++||.+||++|++++|+|+++|+|+|+|+.|+|+.+|++|+|+++++|||+ |++||
T Consensus 33 ~~~m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~~gI~~gs~I~l~~rl~GG 111 (111)
T 2ojr_A 33 LLAMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 111 (111)
T ss_dssp SSCEEEEEECSSSCEEEEEECTTCBHHHHHHHHHHHHCCCTTTEEEEETTEECCSSCBTTTTTCCTTCEEEEEECCCC-
T ss_pred CCeEEEEEEcCCCCEEEEEeCCCCCHHHHHHHHHHHHCcCcccEEEEECCEECCCCCcHHHcCCCCCCEEEEEEeCCCC
Confidence 3579999999999999999999999999999999999999999999999999999999999999999999999 99987
No 55
>4ajy_B Transcription elongation factor B polypeptide 2; E3 ubiquitin ligase, transcription factor, hypoxic signaling transcription; 1.73A {Homo sapiens} PDB: 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A 3ztc_A* 3ztd_A* 3zun_A* 1lm8_B 4b95_A* 2fnj_B 4b9k_A* 4awj_A*
Probab=99.58 E-value=4e-15 Score=136.59 Aligned_cols=75 Identities=12% Similarity=0.225 Sum_probs=69.4
Q ss_pred eEEEEEecCCc-eEEEEcCCCCcHHHHHHHHhhhhCCCCCCeEEEECCeecCCCccccccCCCC-------CCEEEEe-e
Q psy15035 605 LMINIKSNTGN-TVCVNLDPASDIRNVKEMIAPKLGLKYEEVKIIFAGKELEDTTIISECDLGQ-------QSILHAV-K 675 (816)
Q Consensus 605 M~V~Vk~~~g~-t~~v~V~~~~TV~~LK~~I~~~~Gip~~~qrLif~Gk~L~d~~tL~~~~I~~-------~stl~lv-r 675 (816)
|.||++...++ ++.++|++++||.+||++|+.++|+|+++|||||+|+.|+|++||++|||++ ++||||+ |
T Consensus 1 m~vFl~Ikr~ktTI~ldve~sdTV~~lK~kI~~~~giPp~qQrLI~~Gk~LeD~kTL~dy~I~~~ta~~q~~atl~Lvlr 80 (118)
T 4ajy_B 1 MDVFLMIRRHKTTIFTDAKESSTVFELKRIVEGILKRPPDEQRLYKDDQLLDDGKTLGECGFTSQTARPQAPATVGLAFR 80 (118)
T ss_dssp CEEEEEEEEBTEEEEEEEETTSBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTTTTTCCGGGSBTTBCEEEEEEEC
T ss_pred CceEEEEecCCEEEEEEcCCCChHHHHHHHHHHHHCCCHHHeEEEeCCeECCCcCCHHHcCCCcCcccCCCCCEEEEEEe
Confidence 67788777666 7899999999999999999999999999999999999999999999999999 9999999 8
Q ss_pred CCCC
Q psy15035 676 SSPE 679 (816)
Q Consensus 676 ~~gg 679 (816)
..|.
T Consensus 81 ~~~~ 84 (118)
T 4ajy_B 81 ADDT 84 (118)
T ss_dssp CSSC
T ss_pred cCCC
Confidence 7544
No 56
>2gow_A HCG-1 protein, ubiquitin-like protein 3; BC059385, structural genomics, protein structure initiative, PSI; NMR {Homo sapiens}
Probab=99.57 E-value=5.2e-15 Score=138.56 Aligned_cols=82 Identities=12% Similarity=0.248 Sum_probs=73.3
Q ss_pred CCCceEEEEEecCCceEEEEcCCCCcHHHHHHHHhh------hhCCC--CCCeEEEECCeecCCCccccccCCCCCC--E
Q psy15035 601 PDNTLMINIKSNTGNTVCVNLDPASDIRNVKEMIAP------KLGLK--YEEVKIIFAGKELEDTTIISECDLGQQS--I 670 (816)
Q Consensus 601 ~~~~M~V~Vk~~~g~t~~v~V~~~~TV~~LK~~I~~------~~Gip--~~~qrLif~Gk~L~d~~tL~~~~I~~~s--t 670 (816)
....|+|+||+++|++++++|++++||++||++|+. ++|+| +++|||||+||.|+|+.||++|+|+.++ +
T Consensus 14 ~~~~m~I~vktl~G~~~~lev~~s~TV~~lK~~I~~~~p~dwke~ip~~~~~qrLIy~GK~LeD~~TL~~y~I~~~~~~t 93 (125)
T 2gow_A 14 PADMINLRLILVSGKTKEFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLIYQGRFLHGNVTLGALKLPFGKTTV 93 (125)
T ss_dssp CTTCEEEEEECTTSCEEEEEECTTSBHHHHHHHHHSSCCCSCCCCTTCCGGGEEEESSSSEEESSCBTGGGCCCTTSEEE
T ss_pred CCCeEEEEEEeCCCCEEEEEeCCccHHHHHHHHHHHHCCcccccCCCCChHHEEEEECCcCCCCCCcHHHcCCCCCCceE
Confidence 344699999999999999999999999999999999 78984 8999999999999999999999999765 7
Q ss_pred EEEe-eCCCCCCc
Q psy15035 671 LHAV-KSSPENNK 682 (816)
Q Consensus 671 l~lv-r~~gg~~~ 682 (816)
+||+ |++++.+.
T Consensus 94 lhlv~r~~~~~~~ 106 (125)
T 2gow_A 94 MHLVARETLPEPN 106 (125)
T ss_dssp EEEEECSCCSSSS
T ss_pred EEEEecCCCCccc
Confidence 8999 88776443
No 57
>1wx8_A Riken cDNA 4931431F19; ubiquitin-like domain, ubiquilin 1-like, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.57 E-value=2.1e-15 Score=135.15 Aligned_cols=80 Identities=24% Similarity=0.352 Sum_probs=75.2
Q ss_pred CCCceEEEEEecCCceEEEEcCCCCcHHHHHHHHhhhhCCCCCCeEEEECCeecCCCccccccCCCCCCEEEEe-eCCCC
Q psy15035 601 PDNTLMINIKSNTGNTVCVNLDPASDIRNVKEMIAPKLGLKYEEVKIIFAGKELEDTTIISECDLGQQSILHAV-KSSPE 679 (816)
Q Consensus 601 ~~~~M~V~Vk~~~g~t~~v~V~~~~TV~~LK~~I~~~~Gip~~~qrLif~Gk~L~d~~tL~~~~I~~~stl~lv-r~~gg 679 (816)
.+..|+|+||+. |+++.++|++++||.+||++|+..+|+|+++|+|+|+|+.|+|+.||++|+|+++++|||+ |++||
T Consensus 14 ~~~~m~i~Vk~~-g~~~~~~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~i~l~~~~~~g 92 (96)
T 1wx8_A 14 SSRIIRVSVKTP-QDCHEFFLAENSNVRRFKKQISKYLHCNADRLVLIFTGKILRDQDILSQRGILDGSTVHVVVRSHSG 92 (96)
T ss_dssp CSCEEEEEEECS-SSEEEEEEETTCCHHHHHHHHHHHTCSCTTTBCCEETTEECCTTSCHHHHTCCTTEEEECCBCCSSC
T ss_pred CCCcEEEEEEEC-CeEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEECCEECCCcCCHHHCCCCCCCEEEEEEeCCCC
Confidence 346799999998 9999999999999999999999999999999999999999999999999999999999999 88877
Q ss_pred CC
Q psy15035 680 NN 681 (816)
Q Consensus 680 ~~ 681 (816)
..
T Consensus 93 ~~ 94 (96)
T 1wx8_A 93 PS 94 (96)
T ss_dssp SS
T ss_pred CC
Confidence 43
No 58
>1v5o_A 1700011N24RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.57 E-value=7.1e-15 Score=133.37 Aligned_cols=82 Identities=15% Similarity=0.267 Sum_probs=74.3
Q ss_pred CCCceEEEEEecCC----ceEEEEcCCCCcHHHHHHHHhhhhCCCCCCeEEEECCeecCCC-ccccccCCCCCCEEEEe-
Q psy15035 601 PDNTLMINIKSNTG----NTVCVNLDPASDIRNVKEMIAPKLGLKYEEVKIIFAGKELEDT-TIISECDLGQQSILHAV- 674 (816)
Q Consensus 601 ~~~~M~V~Vk~~~g----~t~~v~V~~~~TV~~LK~~I~~~~Gip~~~qrLif~Gk~L~d~-~tL~~~~I~~~stl~lv- 674 (816)
.+..|+|+||+.++ +++.++|++++||++||++|+.++|+|+++|+|+|+|+.|+|+ .||++|+|+++++|||+
T Consensus 4 ~~~~m~I~Vk~~~~~~~~~~~~i~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~gk~L~D~~~tL~~ygI~~g~~l~l~~ 83 (102)
T 1v5o_A 4 GSSGMLITVYCVRRDLTEVTFSLQVNPDFELSNFRVLCELESGVPAEEAQIVYMEQLLTDDHCSLGSYGLKDGDMVVLLQ 83 (102)
T ss_dssp CSCCEEEEEEECCCCCCCCEEEEEECTTCBHHHHHHHHHHHTCCCGGGBCEEETTEEECCSSSBHHHHTCCTTEEEEECB
T ss_pred CCCeEEEEEEECCCCcCceEEEEEcCCCCCHHHHHHHHHHHHCcChHHeEEEECCEECCCCcccHHHCCCCCCCEEEEEE
Confidence 34569999999754 7999999999999999999999999999999999999999987 79999999999999999
Q ss_pred eCCCCCCc
Q psy15035 675 KSSPENNK 682 (816)
Q Consensus 675 r~~gg~~~ 682 (816)
+.+||..+
T Consensus 84 ~~~gg~~~ 91 (102)
T 1v5o_A 84 KDNVGLRT 91 (102)
T ss_dssp CCCCCCSS
T ss_pred CCCCCCCC
Confidence 88877443
No 59
>2fnj_B Transcription elongation factor B polypeptide 2; beta-sandwich, lectin-like, SPRY, protein transport/signaling protein complex; 1.80A {Mus musculus} SCOP: d.15.1.1 PDB: 1lm8_B 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A
Probab=99.57 E-value=2.2e-15 Score=138.89 Aligned_cols=74 Identities=14% Similarity=0.241 Sum_probs=67.0
Q ss_pred eEEEEEecCCc-eEEEEcCCCCcHHHHHHHHhhhhCCCCCCeEEEECCeecCCCccccccCCC-------CCCEEEEe-e
Q psy15035 605 LMINIKSNTGN-TVCVNLDPASDIRNVKEMIAPKLGLKYEEVKIIFAGKELEDTTIISECDLG-------QQSILHAV-K 675 (816)
Q Consensus 605 M~V~Vk~~~g~-t~~v~V~~~~TV~~LK~~I~~~~Gip~~~qrLif~Gk~L~d~~tL~~~~I~-------~~stl~lv-r 675 (816)
|++||+...|+ +++++|++++||++||++|+.++|||+++|||+|+|+.|+|+.||++|||+ .++||||+ |
T Consensus 1 M~mfl~ir~~ktti~lev~~sdTV~~lK~kI~~~egIP~~qQrLi~~Gk~LeD~~TLsdy~I~~~~a~~q~~stL~L~lr 80 (118)
T 2fnj_B 1 MDVFLMIRRHKTTIFTDAKESSTVFELKRIVEGILKRPPEEQRLYKDDQLLDDGKTLGECGFTSQTARPQAPATVGLAFR 80 (118)
T ss_dssp CEEEEEEEEBTEEEEEEEETTSBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBHHHHTCCTTTSBTTBCEEEEEEEB
T ss_pred CcEEEEEecCCEEEEEEeCCcChHHHHHHHHHHHhCCCHHHeEEEECCeECCCCCCHHHcCcccccccCCCCCEEEEEec
Confidence 56666666565 699999999999999999999999999999999999999999999999999 79999999 8
Q ss_pred CCCC
Q psy15035 676 SSPE 679 (816)
Q Consensus 676 ~~gg 679 (816)
.||
T Consensus 81 -~~g 83 (118)
T 2fnj_B 81 -ADD 83 (118)
T ss_dssp -SSS
T ss_pred -CCC
Confidence 544
No 60
>1yqb_A Ubiquilin 3; structural genomics consortium, ubiquitin, ubiquitin-like domain, structural genomics, signaling protein SGC; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=99.57 E-value=5.4e-15 Score=133.70 Aligned_cols=78 Identities=21% Similarity=0.392 Sum_probs=73.9
Q ss_pred CCCceEEEEEecCCceEEEEcCCCCcHHHHHHHHhhhhCCCCCCeEEEECCeecCCCccccccCCCCCCEEEEe-eCCCC
Q psy15035 601 PDNTLMINIKSNTGNTVCVNLDPASDIRNVKEMIAPKLGLKYEEVKIIFAGKELEDTTIISECDLGQQSILHAV-KSSPE 679 (816)
Q Consensus 601 ~~~~M~V~Vk~~~g~t~~v~V~~~~TV~~LK~~I~~~~Gip~~~qrLif~Gk~L~d~~tL~~~~I~~~stl~lv-r~~gg 679 (816)
.+..|+|+||+.+|+ +.++|++++||.+||++|++++|+|+++|+|+|+|+.|+|+.||++|+|+++++|+|+ |++++
T Consensus 19 ~~~~m~I~Vk~~~g~-~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~ygI~~gstI~l~~r~~~~ 97 (100)
T 1yqb_A 19 SPHLIKVTVKTPKDK-EDFSVTDTCTIQQLKEEISQRFKAHPDQLVLIFAGKILKDPDSLAQCGVRDGLTVHLVIKRQHR 97 (100)
T ss_dssp CTTEEEEEEECSSCE-EEEEEETTCBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBHHHHTCCTTCEEEEEECCCCS
T ss_pred CCCeEEEEEEcCCCc-EEEEECCCCcHHHHHHHHHHHHCcChhhEEEEECCEECCCcCcHHHCCCCCCCEEEEEEcCCCC
Confidence 567899999999886 7999999999999999999999999999999999999999999999999999999999 87776
No 61
>1wx7_A Ubiquilin 3; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.56 E-value=9.3e-15 Score=133.54 Aligned_cols=80 Identities=20% Similarity=0.368 Sum_probs=74.6
Q ss_pred CCCceEEEEEecCCceEEEEcCCCCcHHHHHHHHhhhhCCCCCCeEEEECCeecCCCccccccCCCCCCEEEEe-eCCCC
Q psy15035 601 PDNTLMINIKSNTGNTVCVNLDPASDIRNVKEMIAPKLGLKYEEVKIIFAGKELEDTTIISECDLGQQSILHAV-KSSPE 679 (816)
Q Consensus 601 ~~~~M~V~Vk~~~g~t~~v~V~~~~TV~~LK~~I~~~~Gip~~~qrLif~Gk~L~d~~tL~~~~I~~~stl~lv-r~~gg 679 (816)
.+..|+|+||+.+|+ +.++|++++||.+||++|+.++|+|+++|||+|+|+.|+|+.+|++|+|+++++|||+ |+++|
T Consensus 14 ~~~~m~I~Vk~~~g~-~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~~gi~~g~~i~l~~~~~~~ 92 (106)
T 1wx7_A 14 DPHLIKVTVKTPKDK-EDFSVTDTCTIQQLKEEISQRFKAHPDQLVLIFAGKILKDPDSLAQCGVRDGLTVHLVIKRQHR 92 (106)
T ss_dssp CSSEEEEEEECSSCE-EEEEEETTCCHHHHHHHHHHHHTCCTTTEEEEETTEECCTTSCHHHHTCCTTEEEEEEECCCCC
T ss_pred CCceEEEEEEeCCCc-EEEEECCCCcHHHHHHHHHHHHCcChhhEEEEECCEECCCcCcHHHcCCCCCCEEEEEEcCCCC
Confidence 356799999998886 7999999999999999999999999999999999999999999999999999999999 88887
Q ss_pred CC
Q psy15035 680 NN 681 (816)
Q Consensus 680 ~~ 681 (816)
..
T Consensus 93 ~~ 94 (106)
T 1wx7_A 93 AM 94 (106)
T ss_dssp SC
T ss_pred CC
Confidence 44
No 62
>1ttn_A DC-UBP, dendritic cell-derived ubiquitin-like protein; ubiquitin-like domain, solution structure, signaling protein; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.56 E-value=8e-15 Score=134.00 Aligned_cols=79 Identities=11% Similarity=0.270 Sum_probs=73.4
Q ss_pred CCCceEEEEEecCCceEEEEcCCCCcHHHHHHHHhhhhCCCCCCeEEEECCeecCCCccccccCCCCCCEEEEe-eCCCC
Q psy15035 601 PDNTLMINIKSNTGNTVCVNLDPASDIRNVKEMIAPKLGLKYEEVKIIFAGKELEDTTIISECDLGQQSILHAV-KSSPE 679 (816)
Q Consensus 601 ~~~~M~V~Vk~~~g~t~~v~V~~~~TV~~LK~~I~~~~Gip~~~qrLif~Gk~L~d~~tL~~~~I~~~stl~lv-r~~gg 679 (816)
....|+|+||+.+|+++.++|++++||.+||.+|+.++|+|+++|||+|+|+.|+|+.+|++|||++|++|||+ +.+.+
T Consensus 20 ~~~~m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~ygI~~g~ti~lv~~~~~~ 99 (106)
T 1ttn_A 20 SGYECQLRLRLSTGKDLKLVVRSTDTVFHMKRRLHAAEGVEPGSQRWFFSGRPLTDKMKFEELKIPKDYVVQVIVSQPVQ 99 (106)
T ss_dssp -CCSEEEEEEETTTEEEEEEECTTSHHHHHHHHHHHTTCCCSTTCEEEETTEECCTTSHHHHCCCSSSCEEEEECCCSSC
T ss_pred CCCeEEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHHCcCcccEEEEECCEECCCCCcHHHcCCCCCCEEEEEEeCCCC
Confidence 34579999999999999999999999999999999999999999999999999999999999999999999999 65443
No 63
>3q3f_A Ribonuclease/ubiquitin chimeric protein; domain SWAP, oligomerization, ubiquitin insertion, hydrolase binding; 2.17A {Bacillus amyloliquefaciens}
Probab=99.56 E-value=5.9e-15 Score=147.84 Aligned_cols=152 Identities=24% Similarity=0.337 Sum_probs=105.0
Q ss_pred cchhhhHHHHHHHhhhcCCCCCcceeccccCCCCcccceEEEEeCCC--CCCCC-Ccc-hhhhhchhhhhhhhhhhheec
Q psy15035 522 IVPRNFRLLEELEHGQRGVGDGTISWGLENDDDMTLTHWTGMIIGPP--RTSTT-GHI-MDTIIGYIMSVLNEILHLFWI 597 (816)
Q Consensus 522 ~vp~~~~l~~el~~~~~~~~~~~~s~gl~~~~d~~l~~w~~~i~GP~--~t~~e-~~~-~~l~i~f~~~yp~~~p~~~~~ 597 (816)
.+|.++.-.+|.+++--.++.|. -|...+.- .-.|-+++=. ..|-. ++. |.+.|..+..+-. +-++. +
T Consensus 20 ~lp~~yitk~~a~~~gw~~~~~~-l~~~~~~~-----~igg~~f~n~e~~lp~~~~~~~~e~di~~~~~~r~-~~r~~-~ 91 (189)
T 3q3f_A 20 KLPDNYITKSEAQALGWVASKGN-LADVAPGK-----SIGGDIFSNREGKLPGKSGRTWREADINYTSGFRN-SDRIL-Y 91 (189)
T ss_dssp SCCTTEECHHHHHHHTCCTTSCC-HHHHSTTC-----EEEEEEECCTTCCSCCCTTCCEEEEECSCCSSSCC-SCEEE-E
T ss_pred cCCcceeeHHHHHHcCCCCCCCC-HhhcCCCc-----cccCceeccCCCcCCCCCCCEEEEeEeCCCCCCCC-ccceE-e
Confidence 47888888999888865544431 22222211 1123333211 11211 122 2244444333311 11221 2
Q ss_pred cCC-------CCCceEEEEEecCCceEEEEcCCCCcHHHHHHHHhhhhCCCCCCeEEEECCeecCCCccccccCCCCCCE
Q psy15035 598 SRK-------PDNTLMINIKSNTGNTVCVNLDPASDIRNVKEMIAPKLGLKYEEVKIIFAGKELEDTTIISECDLGQQSI 670 (816)
Q Consensus 598 ~~~-------~~~~M~V~Vk~~~g~t~~v~V~~~~TV~~LK~~I~~~~Gip~~~qrLif~Gk~L~d~~tL~~~~I~~~st 670 (816)
+.+ ---.|+|+||+++|++++++|++++||.+||++|+.++|+|+++|+|+|+|+.|+|+.+|++|+|+++++
T Consensus 92 s~dg~~y~T~d~~eMqI~VKtl~Gkt~~l~V~~s~TV~~LK~kI~~~~gIp~~~QrLi~~Gk~L~D~~tL~dygI~~gst 171 (189)
T 3q3f_A 92 SSDWLIYKTTDHYGGQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKEST 171 (189)
T ss_dssp ETTCCEEEESCCCCEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCCEEETTEECCTTCBGGGGTCCTTCE
T ss_pred cCCCcEEEcccccceeeeeecCCCCEEEEEeCCCCcHHHHHHHHHhccCCCHHHEEEEECCEECCCCCCHHHCCCCCCCE
Confidence 222 2235999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEe-eCCCCCC
Q psy15035 671 LHAV-KSSPENN 681 (816)
Q Consensus 671 l~lv-r~~gg~~ 681 (816)
|||+ |++||++
T Consensus 172 I~LvlrlrGG~~ 183 (189)
T 3q3f_A 172 LHLVLRLRGGGQ 183 (189)
T ss_dssp EEECCCCCCCCC
T ss_pred EEEEEEcCCCCc
Confidence 9999 9999854
No 64
>2kdi_A Ubiquitin, vacuolar protein sorting-associated protein 27 fusion protein; ubiquitin interacting motif, UIM, protein domain interface; NMR {Saccharomyces cerevisiae}
Probab=99.56 E-value=1.1e-14 Score=134.71 Aligned_cols=79 Identities=30% Similarity=0.484 Sum_probs=75.7
Q ss_pred CceEEEEEecCCceEEEEcCCCCcHHHHHHHHhhhhCCCCCCeEEEECCeecCCCccccccCCCCCCEEEEe-eCCCCCC
Q psy15035 603 NTLMINIKSNTGNTVCVNLDPASDIRNVKEMIAPKLGLKYEEVKIIFAGKELEDTTIISECDLGQQSILHAV-KSSPENN 681 (816)
Q Consensus 603 ~~M~V~Vk~~~g~t~~v~V~~~~TV~~LK~~I~~~~Gip~~~qrLif~Gk~L~d~~tL~~~~I~~~stl~lv-r~~gg~~ 681 (816)
+..+|+||+++|+++.++|++++||++||++|+.++|+|+++|+|+|+|+.|+|+.+|++|+|+++++|+|+ |++||..
T Consensus 8 ~~~~i~vk~l~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~ygI~~gstI~l~~~~~GG~~ 87 (114)
T 2kdi_A 8 GEFQIFAKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIWAGKQLEDGRTLSDYNIQRESTLHLVLRLRGGSM 87 (114)
T ss_dssp CCCEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTCBTTTTTCCSSCEEEEEECCCSSCC
T ss_pred CcEEEEEEeCCCcEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEECCEECCCCCcHHHCCCCCCCEEEEEEEcCCCce
Confidence 467999999999999999999999999999999999999999999999999999999999999999999999 9998853
No 65
>1j8c_A Ubiquitin-like protein hplic-2; ubiquitin-like domain, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.54 E-value=1.3e-14 Score=136.34 Aligned_cols=79 Identities=20% Similarity=0.370 Sum_probs=70.6
Q ss_pred CCceEEEEEecCCceEEEEcCCCCcHHHHHHHHhhhhCCCCCCeEEEECCeecCCCccccccCCCCCCEEEEe-eCCCCC
Q psy15035 602 DNTLMINIKSNTGNTVCVNLDPASDIRNVKEMIAPKLGLKYEEVKIIFAGKELEDTTIISECDLGQQSILHAV-KSSPEN 680 (816)
Q Consensus 602 ~~~M~V~Vk~~~g~t~~v~V~~~~TV~~LK~~I~~~~Gip~~~qrLif~Gk~L~d~~tL~~~~I~~~stl~lv-r~~gg~ 680 (816)
+..|+|+||+. |+++.++|++++||.+||++|+.++|+|+++|||+|+|+.|+|+.||++|+|++|++|+|+ +.+||+
T Consensus 30 ~~~m~I~Vk~~-g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~dygI~~gstI~lv~~~~gg~ 108 (125)
T 1j8c_A 30 PKIIKVTVKTP-KEKEEFAVPENSSVQQFKEAISKRFKSQTDQLVLIFAGKILKDQDTLIQHGIHDGLTVHLVIKRDPNS 108 (125)
T ss_dssp CCCEEEEEECS-SCEEEEEECTTCCHHHHHHHHHHHHCSCSSSEEEEETTEEESTTSCGGGTTCSSSEEEEEEEC-----
T ss_pred CCcEEEEEEeC-CeEEEEEECCCCcHHHHHHHHHHHHCcCcceEEEEECCEEcCCCCCHHHcCCCCCCEEEEEeccCCCC
Confidence 45799999998 9999999999999999999999999999999999999999999999999999999999999 888774
Q ss_pred C
Q psy15035 681 N 681 (816)
Q Consensus 681 ~ 681 (816)
.
T Consensus 109 ~ 109 (125)
T 1j8c_A 109 S 109 (125)
T ss_dssp -
T ss_pred C
Confidence 3
No 66
>2a4d_A Ubiquitin-conjugating enzyme E2 variant 1; alternative splicing, nuclear protein, UBL conjugation pathway,ubiquitin, ligase, structural genomics; 1.69A {Homo sapiens} SCOP: d.20.1.1 PDB: 2c2v_C 1j7d_A 1j74_A 1zgu_A
Probab=99.54 E-value=2.9e-15 Score=146.35 Aligned_cols=115 Identities=43% Similarity=0.631 Sum_probs=90.7
Q ss_pred ecchhhhHHHHHHHhhhcCCCCCcceeccccCCCCcccceEEEEeCCCCCCCCCcchhhhhchhhhhhhhhhhheeccCC
Q psy15035 521 LIVPRNFRLLEELEHGQRGVGDGTISWGLENDDDMTLTHWTGMIIGPPRTSTTGHIMDTIIGYIMSVLNEILHLFWISRK 600 (816)
Q Consensus 521 l~vp~~~~l~~el~~~~~~~~~~~~s~gl~~~~d~~l~~w~~~i~GP~~t~~e~~~~~l~i~f~~~yp~~~p~~~~~~~~ 600 (816)
+.+||++||++||++++++++++.+++++.+++|++|++|.++|.||++|+||||+|.+.|.||++||.+||+|. |...
T Consensus 22 v~~p~~~RL~kEl~~l~~~~~~g~~~~~~~~~~d~~l~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~v~-F~T~ 100 (160)
T 2a4d_A 22 VKVPRNFRLLEELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTIYENRIYSLKIECGPKYPEAPPFVR-FVTK 100 (160)
T ss_dssp CCHHHHHHHHHHHHHHHSCCTTSSEEEEESSTTCTTCCEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEE-ESBC
T ss_pred eechHHHHHHHHHHHHHhCCCCCcEEEEecCCccccceeeEEEEECCCCCCccCeEEEEEEECCCcCCCCCcEEE-EecC
Confidence 469999999999999999988887899887677767889999999999999999999999999999999999995 7665
Q ss_pred CCCceEEEEEecCCceEEEE-------cCCCCcHHHHHHHHhhhhCC
Q psy15035 601 PDNTLMINIKSNTGNTVCVN-------LDPASDIRNVKEMIAPKLGL 640 (816)
Q Consensus 601 ~~~~M~V~Vk~~~g~t~~v~-------V~~~~TV~~LK~~I~~~~Gi 640 (816)
+-. -.|-..+|+ +.++ =.+..||..+-..|+....-
T Consensus 101 i~H---PNV~~~~G~-ICl~iL~~~~~WsP~~ti~~vL~sI~~ll~~ 143 (160)
T 2a4d_A 101 INM---NGVNSSNGV-VDPRAISVLAKWQNSYSIKVVLQELRRLMMS 143 (160)
T ss_dssp CCC---TTBCTTTCB-BCGGGSHHHHTCCTTCCHHHHHHHHHHHHTS
T ss_pred cee---CCEECCCCE-EehhhcCCccCCCccCcHHHHHHHHHHHHcc
Confidence 200 012112344 3322 23778899988888877643
No 67
>2bwf_A Ubiquitin-like protein DSK2; signaling protein, UBA, signaling proteins; 1.15A {Saccharomyces cerevisiae} SCOP: d.15.1.1 PDB: 2bwe_S
Probab=99.54 E-value=1.7e-14 Score=123.33 Aligned_cols=70 Identities=29% Similarity=0.433 Sum_probs=68.2
Q ss_pred ceEEEEEecCCceEEEEcCCCCcHHHHHHHHhhhhCCCCCCeEEEECCeecCCCccccccCCCCCCEEEEe
Q psy15035 604 TLMINIKSNTGNTVCVNLDPASDIRNVKEMIAPKLGLKYEEVKIIFAGKELEDTTIISECDLGQQSILHAV 674 (816)
Q Consensus 604 ~M~V~Vk~~~g~t~~v~V~~~~TV~~LK~~I~~~~Gip~~~qrLif~Gk~L~d~~tL~~~~I~~~stl~lv 674 (816)
+|+|+||+ +|+++.++|++++||++||++|+..+|+|+++|+|+|+|+.|+|+.+|++|||++|++||++
T Consensus 4 ~m~i~vk~-~g~~~~~~v~~~~tV~~LK~~i~~~~~i~~~~qrL~~~gk~L~d~~tL~~~~i~~g~~i~l~ 73 (77)
T 2bwf_A 4 SLNIHIKS-GQDKWEVNVAPESTVLQFKEAINKANGIPVANQRLIYSGKILKDDQTVESYHIQDGHSVHLV 73 (77)
T ss_dssp EEEEEEEE-TTEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEE
T ss_pred EEEEEEEE-CCEEEEEEECCCCcHHHHHHHHHHHhCCCHHHEEEEECCeEcCCCCCHHHcCCCCCCEEEEE
Confidence 38999999 89999999999999999999999999999999999999999999999999999999999998
No 68
>2klc_A Ubiquilin-1; ubiquitin-like, structural genomics, PSI-2, protein structur initiative, northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=99.54 E-value=1.9e-14 Score=130.29 Aligned_cols=77 Identities=21% Similarity=0.340 Sum_probs=72.2
Q ss_pred CCCceEEEEEecCCceEEEEcCCCCcHHHHHHHHhhhhCCCCCCeEEEECCeecCCCccccccCCCCCCEEEEe-eCCC
Q psy15035 601 PDNTLMINIKSNTGNTVCVNLDPASDIRNVKEMIAPKLGLKYEEVKIIFAGKELEDTTIISECDLGQQSILHAV-KSSP 678 (816)
Q Consensus 601 ~~~~M~V~Vk~~~g~t~~v~V~~~~TV~~LK~~I~~~~Gip~~~qrLif~Gk~L~d~~tL~~~~I~~~stl~lv-r~~g 678 (816)
.+..|+|+||+. |+++.++|++++||++||++|+..+|+|+++|+|+|+|+.|+|+.+|++|||++|++|+|+ +.++
T Consensus 22 ~~~~m~I~Vk~~-g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~~gI~~g~~I~l~~~~~~ 99 (101)
T 2klc_A 22 HPKIMKVTVKTP-KEKEEFAVPENSSVQQFKEEISKRFKSHTDQLVLIFAGKILKDQDTLSQHGIHDGLTVHLVIKTQN 99 (101)
T ss_dssp -CCCEEEEEECS-SCEEEEEECSCCCHHHHHHHHHHHHTCCGGGEEEEETTEEECTTCCTGGGTCCTTCEEEEEECCSS
T ss_pred CCCeEEEEEEeC-CcEEEEEECCCCCHHHHHHHHHHHHCcChhhEEEEECCEECCCcCcHHHcCCCCCCEEEEEEcCCC
Confidence 346799999998 8999999999999999999999999999999999999999999999999999999999999 6654
No 69
>3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens}
Probab=99.54 E-value=1.3e-14 Score=144.11 Aligned_cols=80 Identities=33% Similarity=0.546 Sum_probs=72.7
Q ss_pred CCCCceEEEEEecCCceEEEEcCCCCcHHHHHHHHhhhhCCCCCCeEEEECCeecCCCccccccCCCCCCEEEEe-eCCC
Q psy15035 600 KPDNTLMINIKSNTGNTVCVNLDPASDIRNVKEMIAPKLGLKYEEVKIIFAGKELEDTTIISECDLGQQSILHAV-KSSP 678 (816)
Q Consensus 600 ~~~~~M~V~Vk~~~g~t~~v~V~~~~TV~~LK~~I~~~~Gip~~~qrLif~Gk~L~d~~tL~~~~I~~~stl~lv-r~~g 678 (816)
+....|+|+||+.+|++++++|++++||.+||++|+.++|+|+++|+|+|+|+.|+|+.+|++|+|++|++|||+ |++|
T Consensus 92 ~~~gg~~i~Vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~D~~tL~~y~i~~g~tl~l~~rlrg 171 (172)
T 3u30_A 92 RLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRG 171 (172)
T ss_dssp CCCCCEEEEEEESSCCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCCEEETTEECCTTSBSGGGTCCTTCEEEECC----
T ss_pred cccccccceeecccCcceeEEecCCCCHHHHHHHHHHHhCCCceeEEEEECCccCCCCCcHHHhCCCCCCEEEEEEecCC
Confidence 356789999999999999999999999999999999999999999999999999999999999999999999999 9998
Q ss_pred C
Q psy15035 679 E 679 (816)
Q Consensus 679 g 679 (816)
|
T Consensus 172 G 172 (172)
T 3u30_A 172 G 172 (172)
T ss_dssp -
T ss_pred C
Confidence 7
No 70
>1we7_A SF3A1 protein; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 1zkh_A
Probab=99.53 E-value=1.7e-14 Score=133.77 Aligned_cols=82 Identities=13% Similarity=0.283 Sum_probs=75.9
Q ss_pred CCCceEEEEEec----------CCceEEEEcCCCCcHHHHHHHHhhhhCCCCCCeEEEECCeecCCCccccccCCCCCCE
Q psy15035 601 PDNTLMINIKSN----------TGNTVCVNLDPASDIRNVKEMIAPKLGLKYEEVKIIFAGKELEDTTIISECDLGQQSI 670 (816)
Q Consensus 601 ~~~~M~V~Vk~~----------~g~t~~v~V~~~~TV~~LK~~I~~~~Gip~~~qrLif~Gk~L~d~~tL~~~~I~~~st 670 (816)
.+..++|+|+.+ +|+++.++|++++||.+||++|+..+|+|+++|+|+|+|+.|+|+.+|++|+|+++++
T Consensus 22 ~~~~i~l~V~~p~~~~~~~~~L~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrL~~~Gk~L~D~~tL~~y~i~~g~~ 101 (115)
T 1we7_A 22 NKGPVSIKVQVPNMQDKTEWKLNGQGLVFTLPLTDQVSVIKVKIHEATGMPAGKQKLQYEGIFIKDSNSLAYYNMASGAV 101 (115)
T ss_dssp CCSCEEEEEEECCCSSSCSSCCSSEEEEEEECSCSBTHHHHHHHHHHSSCCTTTEEEEETTEEECTTSBHHHHTCCSSCE
T ss_pred CCCCEEEEEEcCCCccccccccCCeEEEEEECCCCCHHHHHHHHHHHHCCChHHEEEEECCEECCCCCCHHHCCCCCCCE
Confidence 446788899886 4789999999999999999999999999999999999999999999999999999999
Q ss_pred EEEe-eCCCCCCc
Q psy15035 671 LHAV-KSSPENNK 682 (816)
Q Consensus 671 l~lv-r~~gg~~~ 682 (816)
|||+ |++||+++
T Consensus 102 i~lv~rl~GGk~~ 114 (115)
T 1we7_A 102 IHLALKERSGPSS 114 (115)
T ss_dssp EEEEECCCSCCSC
T ss_pred EEEEEEcCCCCCC
Confidence 9999 99999654
No 71
>3u5e_m 60S ribosomal protein L40; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3u5i_m 4b6a_m 4a18_K 4a19_K 4a1b_K 4a1d_K 4adx_5 3izc_p 3izs_p 3iz5_p 3izr_p
Probab=99.52 E-value=8e-16 Score=145.45 Aligned_cols=76 Identities=33% Similarity=0.531 Sum_probs=0.4
Q ss_pred eEEEEEecCCceEEEEcCCCCcHHHHHHHHhhhhCCCCCCeEEEECCeecCCCccccccCCCCCCEEEEe-eCCCCC
Q psy15035 605 LMINIKSNTGNTVCVNLDPASDIRNVKEMIAPKLGLKYEEVKIIFAGKELEDTTIISECDLGQQSILHAV-KSSPEN 680 (816)
Q Consensus 605 M~V~Vk~~~g~t~~v~V~~~~TV~~LK~~I~~~~Gip~~~qrLif~Gk~L~d~~tL~~~~I~~~stl~lv-r~~gg~ 680 (816)
|+|+||+.+|++++++|++++||++||+.|++.+|+|+++|+|+|+|+.|+|+.||++|||++|++|||+ |++||.
T Consensus 1 M~I~Vk~~~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~~~I~~gsti~l~~rl~GG~ 77 (128)
T 3u5e_m 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGI 77 (128)
T ss_dssp ----------------------------------------------------------------------------C
T ss_pred CEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHhCcChHHEEEEECCEECCCCCchhhhccCCCCEEEEEEEcCCCC
Confidence 8999999999999999999999999999999999999999999999999999999999999999999999 999883
No 72
>2kdb_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; UBL domain, membrane, polymorphism, transmembrane; NMR {Homo sapiens}
Probab=99.51 E-value=1.6e-14 Score=130.06 Aligned_cols=73 Identities=11% Similarity=0.220 Sum_probs=66.3
Q ss_pred CCceEEEEEecCCc--eEEEEcCCCCcHHHHHHHHhhh-hCCCC-CCeEEEECCeecCCCcccccc--CCCCCCEEEEe
Q psy15035 602 DNTLMINIKSNTGN--TVCVNLDPASDIRNVKEMIAPK-LGLKY-EEVKIIFAGKELEDTTIISEC--DLGQQSILHAV 674 (816)
Q Consensus 602 ~~~M~V~Vk~~~g~--t~~v~V~~~~TV~~LK~~I~~~-~Gip~-~~qrLif~Gk~L~d~~tL~~~--~I~~~stl~lv 674 (816)
+..|+|+||+++|+ +++++|++++||.+||++|+++ .|+|| ++|||||+||.|+|+.||++| +|+++++|||+
T Consensus 21 ~~~m~I~VK~~~g~~~~i~l~v~~~~TV~~LK~~I~~~~~g~pp~~~QrLIy~Gk~L~D~~tL~~y~~~I~~~~tihLv 99 (99)
T 2kdb_A 21 GHPVTLIIKAPNQKYSDQTISCFLNWTVGKLKTHLSNVYPSKPLTKDQRLVYSGRLLPDHLQLKDILRKQDEYHMVHLV 99 (99)
T ss_dssp --CEEEEEECTTSSSCCEEEEECTTSBHHHHHHHHHHHSTTCCCTTTCCEEETTEEECTTSBTHHHHTTTCSEEEEEEC
T ss_pred CCeEEEEEEcCCCCEEEEEEEcCCCCHHHHHHHHHHHHhcCCCChhhEEEEECCEECCCCCCHHHHhcCCCCCCEEEeC
Confidence 45799999999998 6899999999999999999986 57665 999999999999999999999 99999999986
No 73
>2q0v_A Ubiquitin-conjugating enzyme E2, putative; malaria, structural G structural genomics consortium, SGC, ligase; 2.40A {Plasmodium falciparum} PDB: 3e95_C
Probab=99.51 E-value=8e-15 Score=142.92 Aligned_cols=115 Identities=29% Similarity=0.413 Sum_probs=89.8
Q ss_pred eecchhhhHHHHHHHhhhcCCCCCcceeccccCCCCcccceEEEEeCCCCCCCCCcchhhhhchhhhhhhhhhhheeccC
Q psy15035 520 LLIVPRNFRLLEELEHGQRGVGDGTISWGLENDDDMTLTHWTGMIIGPPRTSTTGHIMDTIIGYIMSVLNEILHLFWISR 599 (816)
Q Consensus 520 ll~vp~~~~l~~el~~~~~~~~~~~~s~gl~~~~d~~l~~w~~~i~GP~~t~~e~~~~~l~i~f~~~yp~~~p~~~~~~~ 599 (816)
-+.+||++||++||++++++.+++++++++.+++|.+|++|.++|.||++|+||||+|.+.|.||++||.+||++. |..
T Consensus 17 ~~~~~~~~RL~kEl~~l~~~~~~~~i~~~~~~~~d~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~v~-F~t 95 (156)
T 2q0v_A 17 QGIVPRSFRLLDELERGQKGNVSEGVSFGLESADDITLSNWSCTIFGQPGTVFENRIYSLTIFCDDNYPDSPPTVK-FDT 95 (156)
T ss_dssp SSCCCHHHHHHHHHHHHHCC-CCTTEEEEESSTTCTTCCEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEE-ESB
T ss_pred cccchHHHHHHHHHHHHHhCCCCCCeEEEECCCccccceeeEEEEECCCCCCcCCcEEEEEEECCCcCCCCCCeEE-EEc
Confidence 3469999999999999999855666999987777778889999999999999999999999999999999999995 766
Q ss_pred CC--CCceEEEEEecCCceE--EEE----cCCCCcHHHHHHHHhhhhCCC
Q psy15035 600 KP--DNTLMINIKSNTGNTV--CVN----LDPASDIRNVKEMIAPKLGLK 641 (816)
Q Consensus 600 ~~--~~~M~V~Vk~~~g~t~--~v~----V~~~~TV~~LK~~I~~~~Gip 641 (816)
.+ ++ | ..+|+.- .++ =.|..||..+-..|+....-|
T Consensus 96 ~i~HPN-----V-~~~G~icisCL~iL~~WsP~~ti~~vL~sI~~ll~~P 139 (156)
T 2q0v_A 96 KIEMSC-----V-DNCGRVIKNNLHILKNWNRNYTIETILISLRQEMLSS 139 (156)
T ss_dssp CCCCTT-----B-CTTSBBCGGGSHHHHTCCTTCCHHHHHHHHHHHTTST
T ss_pred ccccCC-----C-ccCCeEehhhcccccCCCCcCcHHHHHHHHHHHHhCC
Confidence 51 11 2 1234420 222 347789999888888776543
No 74
>1wia_A Hypothetical ubiquitin-like protein (riken cDNA 2010008E23); 'structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.50 E-value=9.7e-14 Score=124.08 Aligned_cols=74 Identities=15% Similarity=0.297 Sum_probs=69.3
Q ss_pred CCceEEEEEecCCceEEEEcCCCCcHHHHHHHHhhhhCCCCCCeEEEECCeecCCC-ccccccCCCCCCEEEEe-eCCC
Q psy15035 602 DNTLMINIKSNTGNTVCVNLDPASDIRNVKEMIAPKLGLKYEEVKIIFAGKELEDT-TIISECDLGQQSILHAV-KSSP 678 (816)
Q Consensus 602 ~~~M~V~Vk~~~g~t~~v~V~~~~TV~~LK~~I~~~~Gip~~~qrLif~Gk~L~d~-~tL~~~~I~~~stl~lv-r~~g 678 (816)
...|+|+||+.+|+++.++|++++||.+||++|+.++ +++|||+|+|+.|+|+ .+|++|+|++|++|||+ +.++
T Consensus 5 ~~~m~i~Vk~~~g~~~~~~v~~~~TV~~LK~~i~~~~---~~~qrLi~~Gk~L~D~~~tL~~y~i~~g~~i~l~~~~~~ 80 (95)
T 1wia_A 5 SSGINVRLKFLNDTEELAVARPEDTVGTLKSKYFPGQ---ESQMKLIYQGRLLQDPARTLSSLNITNNCVIHCHRSPPG 80 (95)
T ss_dssp CCSEEEEEEETTTEEEEEEECSSSBHHHHHHHHSSST---TTTCEEEETTEECCCSSCBTTTTTCCTTEEEEEECCCCC
T ss_pred CCeEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHhhC---cCcEEEEECCEEccCCcCCHHHcCCCCCCEEEEEECCCC
Confidence 4579999999999999999999999999999999998 8899999999999999 99999999999999999 5544
No 75
>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B
Probab=99.50 E-value=6.6e-14 Score=135.41 Aligned_cols=80 Identities=33% Similarity=0.546 Sum_probs=75.9
Q ss_pred CCCCceEEEEEecCCceEEEEcCCCCcHHHHHHHHhhhhCCCCCCeEEEECCeecCCCccccccCCCCCCEEEEe-eCCC
Q psy15035 600 KPDNTLMINIKSNTGNTVCVNLDPASDIRNVKEMIAPKLGLKYEEVKIIFAGKELEDTTIISECDLGQQSILHAV-KSSP 678 (816)
Q Consensus 600 ~~~~~M~V~Vk~~~g~t~~v~V~~~~TV~~LK~~I~~~~Gip~~~qrLif~Gk~L~d~~tL~~~~I~~~stl~lv-r~~g 678 (816)
+....|+|+||+.+|+++.++|++++||.+||++|+.++|+|+++|+|+|+|+.|+|+.||++|+|++|++||++ |++|
T Consensus 72 ~~~~~~~i~Vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~qrL~~~g~~L~d~~tL~~~~i~~~~~i~l~~r~~G 151 (152)
T 3b08_A 72 RLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRG 151 (152)
T ss_dssp CCTTCEEEEEEESSSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEECCCC
T ss_pred ecccccceeeeecCCCEEEEEeCCCCcHHHHHHHHHHHhCcChhhEEEEECCEECCCCCCHHHcCCCCCCEEEEEEecCC
Confidence 355679999999999999999999999999999999999999999999999999999999999999999999999 9998
Q ss_pred C
Q psy15035 679 E 679 (816)
Q Consensus 679 g 679 (816)
|
T Consensus 152 G 152 (152)
T 3b08_A 152 G 152 (152)
T ss_dssp -
T ss_pred C
Confidence 7
No 76
>3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens}
Probab=99.50 E-value=5.2e-14 Score=139.70 Aligned_cols=79 Identities=33% Similarity=0.554 Sum_probs=74.9
Q ss_pred CCCceEEEEEecCCceEEEEcCCCCcHHHHHHHHhhhhCCCCCCeEEEECCeecCCCccccccCCCCCCEEEEe-eCCCC
Q psy15035 601 PDNTLMINIKSNTGNTVCVNLDPASDIRNVKEMIAPKLGLKYEEVKIIFAGKELEDTTIISECDLGQQSILHAV-KSSPE 679 (816)
Q Consensus 601 ~~~~M~V~Vk~~~g~t~~v~V~~~~TV~~LK~~I~~~~Gip~~~qrLif~Gk~L~d~~tL~~~~I~~~stl~lv-r~~gg 679 (816)
...+|+|+||+.+|++++++|++++||.+||++|+.++|+|+++|+|+|+|+.|+|+.+|++|+|.++++|||+ |++||
T Consensus 17 ~~~~m~i~Vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~QrL~~~g~~L~d~~tL~~~~i~~~~~l~l~~~~~gg 96 (172)
T 3u30_A 17 RGSHMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 96 (172)
T ss_dssp --CCEEEEEEETTTEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTCBTGGGTCCTTCEEEEEECCCCC
T ss_pred CCCcEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEECCccccccCCHhHcCCcccceeeeeeccccc
Confidence 44679999999999999999999999999999999999999999999999999999999999999999999999 88877
No 77
>2hlw_A Ubiquitin-conjugating enzyme E2 variant 1; ubiquitin-conjugating enzyme variant, UBC13, HUBC13, polyubiquitination, ligase, signaling protein; NMR {Homo sapiens}
Probab=99.49 E-value=8.3e-15 Score=144.73 Aligned_cols=119 Identities=43% Similarity=0.618 Sum_probs=91.9
Q ss_pred ccceeeecchhhhHHHHHHHhhhcCCCCCcceeccccCCCCcccceEEEEeCCCCCCCCCcchhhhhchhhhhhhhhhhh
Q psy15035 515 SGAKVLLIVPRNFRLLEELEHGQRGVGDGTISWGLENDDDMTLTHWTGMIIGPPRTSTTGHIMDTIIGYIMSVLNEILHL 594 (816)
Q Consensus 515 ~Ga~~ll~vp~~~~l~~el~~~~~~~~~~~~s~gl~~~~d~~l~~w~~~i~GP~~t~~e~~~~~l~i~f~~~yp~~~p~~ 594 (816)
+|++ +.+||++||++||++++++++++.+++++.+++|++|++|.++|.||++|+||||+|.+.|.||++||++||++
T Consensus 28 ~~~~--v~~p~~~RL~kEl~~l~~~~~~g~~~~~~~~~~d~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~v 105 (170)
T 2hlw_A 28 HCKG--VKVPRNFRLLEELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTIYENRIYSLKIECGPKYPEAPPFV 105 (170)
T ss_dssp CCCC--CCCCHHHHHHHHHHHHHHCCGGGCEEEEESSTTCSSCCBEEEEECCCSSSTTSSCCBCEEEECCSSCTTSCCEE
T ss_pred cCCc--ccCHHHHHHHHHHHHHHhCCCCCcEEEEecCcccccceeeEEEEeCCCCCCcCCcEEEEEEECCCCCCCCCCee
Confidence 4554 57999999999999999998888789988766766788999999999999999999999999999999999999
Q ss_pred eeccCCCCCceEEEEEecCCceEEEE-------cCCCCcHHHHHHHHhhhhCC
Q psy15035 595 FWISRKPDNTLMINIKSNTGNTVCVN-------LDPASDIRNVKEMIAPKLGL 640 (816)
Q Consensus 595 ~~~~~~~~~~M~V~Vk~~~g~t~~v~-------V~~~~TV~~LK~~I~~~~Gi 640 (816)
. |...+- .-.|-..+|. ++++ =.+..||..+-..|+....-
T Consensus 106 ~-F~T~i~---HPNV~~~~G~-ICl~iL~~~~~WsP~~ti~~vL~sI~~ll~~ 153 (170)
T 2hlw_A 106 R-FVTKIN---MNGVNSSNGV-VDPRAISVLAKWQNSYSIKVVLQELRRLMMS 153 (170)
T ss_dssp E-ECBCCC---CSSBCSSSCB-BCTTTCHHHHTCCSSCCHHHHHHHHHHHHHS
T ss_pred E-Eecccc---cCCEeCCCCE-EEhhhcCCCCCCCccCcHHHHHHHHHHHHcc
Confidence 5 766520 0012222444 3322 23677899888888776643
No 78
>1jat_B Ubiquitin-conjugating enzyme variant MMS2; UEV, ligase; 1.60A {Saccharomyces cerevisiae} SCOP: d.20.1.1 PDB: 2gmi_B
Probab=99.49 E-value=1.2e-14 Score=139.16 Aligned_cols=114 Identities=30% Similarity=0.499 Sum_probs=84.6
Q ss_pred cchhhhHHHHHHHhhhcCCCCCcceeccccCCCCcccceEEEEeCCCCCCCCCcchhhhhchhhhhhhhhhhheeccCCC
Q psy15035 522 IVPRNFRLLEELEHGQRGVGDGTISWGLENDDDMTLTHWTGMIIGPPRTSTTGHIMDTIIGYIMSVLNEILHLFWISRKP 601 (816)
Q Consensus 522 ~vp~~~~l~~el~~~~~~~~~~~~s~gl~~~~d~~l~~w~~~i~GP~~t~~e~~~~~l~i~f~~~yp~~~p~~~~~~~~~ 601 (816)
.+||++||++||++++++.+++++++++.+++|.+|++|.++|.||++|+||||+|.+.|.||++||.+||++. |...+
T Consensus 4 ~~~~~~RL~kEl~~l~~~~~~~~~~~~~~~~~d~nl~~w~~~i~GP~~tpyegg~f~~~i~fp~~YP~~PP~v~-f~t~i 82 (138)
T 1jat_B 4 KVPRNFRLLEELEKGEKGFGPESCSYGLADSDDITMTKWNGTILGPPHSNHENRIYSLSIDCGPNYPDSPPKVT-FISKI 82 (138)
T ss_dssp CCCHHHHHHHHHHHHHC----CCEEEEESSTTCTTCCEEEEEEECCSSSTTTTCEEEEEEECCTTTTTSCCEEE-ESBCC
T ss_pred hHHHHHHHHHHHHHHHhcCCCCCEEEEeCCCCCCcceEEEEEEECCCCCCccceEEEEEEECCCCCCCCCCceE-EEccc
Confidence 57999999999999999844555899987767777889999999999999999999999999999999999994 76651
Q ss_pred CCceEEEEEecCCceE-EEE----cCCCCcHHHHHHHHhhhhC
Q psy15035 602 DNTLMINIKSNTGNTV-CVN----LDPASDIRNVKEMIAPKLG 639 (816)
Q Consensus 602 ~~~M~V~Vk~~~g~t~-~v~----V~~~~TV~~LK~~I~~~~G 639 (816)
-. -.|...+|+.. .++ =.+..||..+-..|.....
T Consensus 83 ~H---Pnv~~~~G~i~~cL~~l~~W~p~~~i~~vl~~i~~ll~ 122 (138)
T 1jat_B 83 NL---PCVNPTTGEVQTDFHTLRDWKRAYTMETLLLDLRKEMA 122 (138)
T ss_dssp CC---TTBCTTTCBBCTTSHHHHTCCTTCCHHHHHHHHHHHHT
T ss_pred cc---CCEeCCCCEEeeecccCCCCCCcCcHHHHHHHHHHHHc
Confidence 00 01222234430 122 2377888888877776543
No 79
>4dbg_A Ranbp-type and C3HC4-type zinc finger-containing; ubiquitin fold, ubiquitination, ligase; 2.71A {Homo sapiens} PDB: 2lgy_A
Probab=99.46 E-value=1.1e-13 Score=125.10 Aligned_cols=73 Identities=11% Similarity=0.168 Sum_probs=68.7
Q ss_pred CCceEEEEEecCC--ceEEEEcCCCCcHHHHHHHHhhhhCCCCCCeEEEECCeecCCCccccccCC-CCCCEEEEe
Q psy15035 602 DNTLMINIKSNTG--NTVCVNLDPASDIRNVKEMIAPKLGLKYEEVKIIFAGKELEDTTIISECDL-GQQSILHAV 674 (816)
Q Consensus 602 ~~~M~V~Vk~~~g--~t~~v~V~~~~TV~~LK~~I~~~~Gip~~~qrLif~Gk~L~d~~tL~~~~I-~~~stl~lv 674 (816)
+..|+|+|++..+ .+++++|+|++||++||++|++++|+||++|||+|+|+.++|+.||++||| ++|+++||+
T Consensus 22 ~i~l~v~v~d~~s~~~~i~l~V~ps~TV~~LK~~I~~k~Gipp~~QRli~ggkll~D~~TL~~ygI~~~G~t~hL~ 97 (105)
T 4dbg_A 22 DIRLWVSVEDAQMHTVTIWLTVRPDMTVASLKDMVFLDYGFPPVLQQWVIGQRLARDQETLHSHGVRQNGDSAYLY 97 (105)
T ss_dssp CEEEEEEEEESSSCCEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEEECTTCBTGGGTCCSTTCEEEEE
T ss_pred cEEEEEEEEccCCCCceEEEEECCcChHHHHHHHHHHHhCCCHHHEEEeccCeEccCcCcHHHcCCCCCCCEEEEE
Confidence 3479999999875 689999999999999999999999999999999999999999999999999 699999998
No 80
>1v5t_A 8430435I17RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 2kx3_A
Probab=99.46 E-value=9.1e-14 Score=123.13 Aligned_cols=73 Identities=19% Similarity=0.283 Sum_probs=69.7
Q ss_pred CCCceEEEEEecCCceEEE-EcCCCCcHHHHHHHHhhhhCCCCCCeEEE---ECCeecCCCccccccCCCCCCEEEEe
Q psy15035 601 PDNTLMINIKSNTGNTVCV-NLDPASDIRNVKEMIAPKLGLKYEEVKII---FAGKELEDTTIISECDLGQQSILHAV 674 (816)
Q Consensus 601 ~~~~M~V~Vk~~~g~t~~v-~V~~~~TV~~LK~~I~~~~Gip~~~qrLi---f~Gk~L~d~~tL~~~~I~~~stl~lv 674 (816)
.+..|+|+||+ .|+++.+ +|++++||.+||++|++++|||+++|||+ |+|+.|+|+.+|++|+|+++++|||+
T Consensus 4 ~~~~m~i~Vk~-~g~~~~i~~v~~~~TV~~lK~~I~~~~gip~~~QkLi~~k~~Gk~L~D~~~L~~~~i~~g~~l~l~ 80 (90)
T 1v5t_A 4 GSSGLPIIVKW-GGQEYSVTTLSEDDTVLDLKQFLKTLTGVLPERQKLLGLKVKGKPAENDVKLGALKLKPNTKIMMM 80 (90)
T ss_dssp CCCSCCEEEEE-TTEEEEECSCCSSSBHHHHHHHHHHHTCCCTTTCEEESCEETTEECCTTSBHHHHTCCTTEEEEEE
T ss_pred CCceEEEEEEE-CCEEEEEEEeCCCCCHHHHHHHHHHHHCcCHHHeEEEeeccCCcCcCCCCCHHHcCCCCCCEEEEE
Confidence 34579999998 7899999 99999999999999999999999999999 99999999999999999999999999
No 81
>1wgg_A Ubiquitin carboxyl-terminal hydrolase 14; ubiquitin specific protease 14, USP14, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.46 E-value=1.5e-13 Score=123.17 Aligned_cols=71 Identities=13% Similarity=0.144 Sum_probs=67.8
Q ss_pred CCceEEEEEecCCceE-EEEcCCCCcHHHHHHHHhhhhCCCCCCeEEEECCeecCCCccccccCCCCCCEEEEe
Q psy15035 602 DNTLMINIKSNTGNTV-CVNLDPASDIRNVKEMIAPKLGLKYEEVKIIFAGKELEDTTIISECDLGQQSILHAV 674 (816)
Q Consensus 602 ~~~M~V~Vk~~~g~t~-~v~V~~~~TV~~LK~~I~~~~Gip~~~qrLif~Gk~L~d~~tL~~~~I~~~stl~lv 674 (816)
+..|+|+||+ .|+++ .++|++++||.+||++|++++|||+++|||+|+|+.|+|+ +|++|+|+++++|||+
T Consensus 5 ~~~m~i~Vk~-~g~~~~~l~v~~~~TV~~lK~~I~~~tgip~~~QkLi~~Gk~L~D~-tL~~~~I~~g~~i~l~ 76 (96)
T 1wgg_A 5 SSGYSVTVKW-GKEKFEGVELNTDEPPMVFKAQLFALTGVQPARQKVMVKGGTLKDD-DWGNIKMKNGMTVLMM 76 (96)
T ss_dssp CCEEEEEEEE-TTEEEEEEEEESSSCHHHHHHHHHHHTCCCTTTSCCEETTEECCSS-CCCSCCCCSSCEEECC
T ss_pred CcEEEEEEEE-CCEEEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEECCcCCCCC-CHHHCCCCCCCEEEEE
Confidence 4579999997 68999 6999999999999999999999999999999999999999 9999999999999999
No 82
>3m63_B Ubiquitin domain-containing protein DSK2; armadillo-like repeats, UBL conjugation pathway, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=99.46 E-value=3.9e-14 Score=128.23 Aligned_cols=71 Identities=28% Similarity=0.417 Sum_probs=67.2
Q ss_pred CceEEEEEecCCceEEEEcCCCCcHHHHHHHHhhhhCCCCCCeEEEECCeecCCCccccccCCCCCCEEEEe
Q psy15035 603 NTLMINIKSNTGNTVCVNLDPASDIRNVKEMIAPKLGLKYEEVKIIFAGKELEDTTIISECDLGQQSILHAV 674 (816)
Q Consensus 603 ~~M~V~Vk~~~g~t~~v~V~~~~TV~~LK~~I~~~~Gip~~~qrLif~Gk~L~d~~tL~~~~I~~~stl~lv 674 (816)
..|+|+||+ +|+++.++|++++||++||++|++++|+|+++|||+|+|+.|+|+.+|++|||++|++|+|+
T Consensus 27 m~i~I~Vk~-~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~~gI~~g~tI~lv 97 (101)
T 3m63_B 27 MSLNIHIKS-GQDKWEVNVAPESTVLQFKEAINKANGIPVANQRLIYSGKILKDDQTVESYHIQDGHSVHLV 97 (101)
T ss_dssp --CCEEEEC-SSCCCCBCCCTTSBHHHHHHHHHHHHSCCSTTCCEEETTEECCTTSBTTTTTCCTTEEEEEC
T ss_pred cEEEEEEEE-CCEEEEEEeCCCCCHHHHHHHHHHHHCcChHHEEEEECCEECCCcCcHHHCCCCCCCEEEEE
Confidence 357889998 89999999999999999999999999999999999999999999999999999999999999
No 83
>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A
Probab=99.46 E-value=1.3e-13 Score=134.95 Aligned_cols=76 Identities=22% Similarity=0.330 Sum_probs=71.6
Q ss_pred ceEEEEEecCCceEEEEcCCCCcHHHHHHHHhhhhCCCCCCeEEE-E-CCeecCCCccccccCCCCCCEEEEe-e-CCCC
Q psy15035 604 TLMINIKSNTGNTVCVNLDPASDIRNVKEMIAPKLGLKYEEVKII-F-AGKELEDTTIISECDLGQQSILHAV-K-SSPE 679 (816)
Q Consensus 604 ~M~V~Vk~~~g~t~~v~V~~~~TV~~LK~~I~~~~Gip~~~qrLi-f-~Gk~L~d~~tL~~~~I~~~stl~lv-r-~~gg 679 (816)
.|+|+||+++|++++++|++++||++||++|+.++|+|+++|+|+ | +|+.|+|+.+|++|+|.+|++||++ + ++++
T Consensus 2 ~m~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~QrL~~~~~g~~L~d~~tL~~y~i~~~~~l~l~~~~~~~~ 81 (159)
T 3rt3_B 2 GWDLTVKMLAGNEFQVSLSSSMSVSELKAQITQKIGVHAFQQRLAVHPSGVALQDRVPLASQGLGPGSTVLLVVDKSDEP 81 (159)
T ss_dssp -CEEEEEETTSCEEEEECCTTCCHHHHHHHHHHHHCCCGGGEEEEEETTCCBCCTTSCGGGGTCCTTCEEEEEECCCCCC
T ss_pred ceEEEEEECCCCEEEEEeCCCCcHHHHHHHHHHHhCCCHHHEEEEEcCCCCCCCCCCCHHHcCCCCCCEEEEEccCCCCc
Confidence 489999999999999999999999999999999999999999999 9 8999999999999999999999999 7 3544
No 84
>1wxv_A BAG-family molecular chaperone regulator-1; structural genomics, apoptosis, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.44 E-value=3.7e-13 Score=119.54 Aligned_cols=73 Identities=14% Similarity=0.297 Sum_probs=68.4
Q ss_pred CCCceEEEEEecCCceEEEEcCCC-----CcHHHHHHHHhhhhCCCCCCeEEEECCeecCC-CccccccCCCCCCEEEEe
Q psy15035 601 PDNTLMINIKSNTGNTVCVNLDPA-----SDIRNVKEMIAPKLGLKYEEVKIIFAGKELED-TTIISECDLGQQSILHAV 674 (816)
Q Consensus 601 ~~~~M~V~Vk~~~g~t~~v~V~~~-----~TV~~LK~~I~~~~Gip~~~qrLif~Gk~L~d-~~tL~~~~I~~~stl~lv 674 (816)
.+..|+|+||+ .|+++.++|+++ +||.+||++|+.++|+|+++|||+|+|+.|.| +.+|++|+|+++++|||+
T Consensus 4 ~~~~~~v~Vk~-~~~~~~i~v~~~~~~~~~TV~~LK~~i~~~~gip~~~qrL~~~Gk~L~D~~~~L~~~~i~~g~~i~l~ 82 (92)
T 1wxv_A 4 GSSGLTVTVTH-SNEKHDLHVTSQQGSSEPVVQDLAQVVEEVIGVPQSFQKLIFKGKSLKEMETPLSALGIQDGCRVMLI 82 (92)
T ss_dssp CCSSEEEEEEC-SSSEEEEEECCCSSSSSCBHHHHHHHHHHHTCCCTTTCEEEETTEEECCSSSBHHHHTCCSSEEEEEE
T ss_pred CCCeEEEEEEE-CCEEEEEEECCCcCcccCcHHHHHHHHHHHHCcCHHHEEEEECCeecCCCcccHHHCCCCCCCEEEEE
Confidence 45679999999 588999999995 99999999999999999999999999999998 669999999999999999
No 85
>1x1m_A Ubiquitin-like protein SB132; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.44 E-value=2.7e-13 Score=124.02 Aligned_cols=76 Identities=22% Similarity=0.321 Sum_probs=69.5
Q ss_pred CCceEEEEEecCC---ceEEEEcC--------C-CCcHHHHHHHHhhhh--CCCCCC-eEEEECCeecCCCccccccCCC
Q psy15035 602 DNTLMINIKSNTG---NTVCVNLD--------P-ASDIRNVKEMIAPKL--GLKYEE-VKIIFAGKELEDTTIISECDLG 666 (816)
Q Consensus 602 ~~~M~V~Vk~~~g---~t~~v~V~--------~-~~TV~~LK~~I~~~~--Gip~~~-qrLif~Gk~L~d~~tL~~~~I~ 666 (816)
...|+|+||+.+| +++.++|+ + ++||.+||++|+.++ |+|+++ |||+|+|+.|+|+.+|++|+|+
T Consensus 10 ~~~~~i~Vk~~~~~~~~~~~l~v~~~~~~~v~~~~~TV~~LK~~i~~~~~~gip~~~~qrLi~~Gk~L~D~~tL~~y~i~ 89 (107)
T 1x1m_A 10 LSDWHLAVKLADQPLAPKSILQLPETELGEYSLGGYSISFLKQLIAGKLQESVPDPELIDLIYCGRKLKDDQTLDFYGIQ 89 (107)
T ss_dssp CCSCCEEEEETTCTTSCCEEECCCCCSSCSSCCCCCBHHHHHHHHHHHCTTTCCCSSSEEEEETTEECCTTCBHHHHTCC
T ss_pred CCceEEEEEeCCCCCccEEEEEecCccccccCcccCCHHHHHHHHHHHhccCCChhhcEEEEECCeECCCCCcHHHcCCC
Confidence 3469999999988 89999954 4 499999999999999 999999 9999999999999999999999
Q ss_pred CCCEEEEe-eCC
Q psy15035 667 QQSILHAV-KSS 677 (816)
Q Consensus 667 ~~stl~lv-r~~ 677 (816)
++++|||+ |.+
T Consensus 90 ~g~~i~lv~~~~ 101 (107)
T 1x1m_A 90 PGSTVHVLRKSW 101 (107)
T ss_dssp TTCEEEEEESSC
T ss_pred CCCEEEEEeCCC
Confidence 99999999 543
No 86
>2dzm_A FAS-associated factor 1; ubiquitin-like domain, HFAF1, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.42 E-value=3.7e-13 Score=121.16 Aligned_cols=71 Identities=15% Similarity=0.254 Sum_probs=66.5
Q ss_pred CceEEEEEecCCceEEEEcCCCCcHHHHHHHHhhhhCCCCCCeEEEE--CCeecCCCccccccCCCCCCEEEEe
Q psy15035 603 NTLMINIKSNTGNTVCVNLDPASDIRNVKEMIAPKLGLKYEEVKIIF--AGKELEDTTIISECDLGQQSILHAV 674 (816)
Q Consensus 603 ~~M~V~Vk~~~g~t~~v~V~~~~TV~~LK~~I~~~~Gip~~~qrLif--~Gk~L~d~~tL~~~~I~~~stl~lv 674 (816)
..|.++++..+|++++|+|++++||++||++|++++||||++|||+| +|+ |+|+.+|++|+|++|++|||+
T Consensus 7 ~~m~~~~vk~~Gk~~~v~v~~~~TV~~LK~~I~~~tgIpp~~QkLi~~~~gk-L~D~~tLs~~~I~~gstL~lv 79 (100)
T 2dzm_A 7 GRMLDFRVEYRDRNVDVVLEDTCTVGEIKQILENELQIPVSKMLLKGWKTGD-VEDSTVLKSLHLPKNNSLYVL 79 (100)
T ss_dssp CCEEEEEEECSSCEEEEEEETTSBHHHHHHHHHHHHCCCTTTCCEECCSSSC-CCTTSBHHHHCCCSEEEEEEC
T ss_pred cceEEEEEEeCCeEEEEEECCCCcHHHHHHHHHHHHCCChhHeEEEccCCCC-CCCcCCHHHcCCCCCCEEEEE
Confidence 35888888889999999999999999999999999999999999996 666 999999999999999999999
No 87
>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B
Probab=99.42 E-value=3.8e-13 Score=130.04 Aligned_cols=75 Identities=35% Similarity=0.585 Sum_probs=72.3
Q ss_pred eEEEEEecCCceEEEEcCCCCcHHHHHHHHhhhhCCCCCCeEEEECCeecCCCccccccCCCCCCEEEEe-eCCCC
Q psy15035 605 LMINIKSNTGNTVCVNLDPASDIRNVKEMIAPKLGLKYEEVKIIFAGKELEDTTIISECDLGQQSILHAV-KSSPE 679 (816)
Q Consensus 605 M~V~Vk~~~g~t~~v~V~~~~TV~~LK~~I~~~~Gip~~~qrLif~Gk~L~d~~tL~~~~I~~~stl~lv-r~~gg 679 (816)
|+|+||+.+|++++++|++++||++||++|+.++|+|+++|+|+|+|+.|+|+.+|++|||.+|++||++ +.+++
T Consensus 1 M~i~vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~L~~~g~~L~d~~tL~~~~i~~~~~l~l~~~~~~~ 76 (152)
T 3b08_A 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76 (152)
T ss_dssp CEEEEEETTSCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEECCTTC
T ss_pred CEEEEEeCCCCEEEEEECCCCCHHHHHHHHHHHHCcChHHeEEEECCeECcCcccHHHhccCCCCeeEEEeecccc
Confidence 8999999999999999999999999999999999999999999999999999999999999999999999 76665
No 88
>2kd0_A LRR repeats and ubiquitin-like domain-containing protein AT2G30105; ubiquitin-like protein, NESG, leucine-rich repeat, structural genomics; NMR {Arabidopsis thaliana}
Probab=99.40 E-value=7.8e-13 Score=115.84 Aligned_cols=68 Identities=21% Similarity=0.372 Sum_probs=64.5
Q ss_pred EEEEecCCceEEEEcCCCCcHHHHHHHHhhhhCCCCCCeEEEECCeecCCCccccccCCCCCCEEEEe
Q psy15035 607 INIKSNTGNTVCVNLDPASDIRNVKEMIAPKLGLKYEEVKIIFAGKELEDTTIISECDLGQQSILHAV 674 (816)
Q Consensus 607 V~Vk~~~g~t~~v~V~~~~TV~~LK~~I~~~~Gip~~~qrLif~Gk~L~d~~tL~~~~I~~~stl~lv 674 (816)
+++++.+|+++.++|++++||++||++|+..+|+|+++|+|+|+|+.|+|+.+|++|||++|++|+|+
T Consensus 14 ~~~~~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~l~l~ 81 (85)
T 2kd0_A 14 KLTVKFGGKSIPLSVSPDCTVKDLKSQLQPITNVLPRGQKLIFKGKVLVETSTLKQSDVGSGAKLMLM 81 (85)
T ss_dssp EEEEEETTEEEEEEECTTSBHHHHHHHHHHHHCCCTTTCEEEETTEECCTTCBTTTTTCCTTEEEEEE
T ss_pred EEEEEECCEEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEECCeECCCcCCHHHCCCCCCCEEEEE
Confidence 35556689999999999999999999999999999999999999999999999999999999999998
No 89
>2daf_A FLJ35834 protein; hypothetical protein FLJ35834, ubiquitin-like domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.38 E-value=2e-12 Score=117.97 Aligned_cols=73 Identities=15% Similarity=0.322 Sum_probs=68.6
Q ss_pred CCceEEEEE-ecCCceEEEEcCCCCcHHHHHHHHhhhhCCCCCCeEEEECCeecCCCccccccCCCCCCEEEEe
Q psy15035 602 DNTLMINIK-SNTGNTVCVNLDPASDIRNVKEMIAPKLGLKYEEVKIIFAGKELEDTTIISECDLGQQSILHAV 674 (816)
Q Consensus 602 ~~~M~V~Vk-~~~g~t~~v~V~~~~TV~~LK~~I~~~~Gip~~~qrLif~Gk~L~d~~tL~~~~I~~~stl~lv 674 (816)
...+.|.|+ ...|+.++++++++.||.+||+.++.+.++|+++|+|+|+||.|+|+.||.+|||++|.||||+
T Consensus 13 ~~~itvkv~l~~~~~k~tv~v~~d~TV~dLKe~ls~~~~iP~e~qrLIy~GKiLKD~eTL~~~gIk~g~TIhLv 86 (118)
T 2daf_A 13 DSLATVKVVLIPVGQEIVIPFKVDTILKYLKDHFSHLLGIPHSVLQIRYSGKILKNNETLVQHGVKPQEIVQVE 86 (118)
T ss_dssp SSCEEEEEEETTTCCEEEEEECSSSCSHHHHHHHHHHHTCCTTTEEEEETTEEECSSCCHHHHSCCSSCEEEEE
T ss_pred CccEEEEEEEcCCCcEEEEEeCCCCcHHHHHHHHHhhhCCChHHEEEEECCeEcCCcchHHHcCCCCCCEEEEE
Confidence 446788887 5578899999999999999999999999999999999999999999999999999999999999
No 90
>1v86_A DNA segment, CHR 7, wayne state university 128, expressed; ubiquitin fold, structural genomics, D7WSU128E protein; HET: DNA; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.37 E-value=5.7e-13 Score=119.22 Aligned_cols=72 Identities=15% Similarity=0.140 Sum_probs=66.9
Q ss_pred CCCceEEEEEecCCceEEEEcCCCCcHHHHHHHHhhhhCCCCCCeEEEECCeecCCCccccccCCCCCCEEEEe
Q psy15035 601 PDNTLMINIKSNTGNTVCVNLDPASDIRNVKEMIAPKLGLKYEEVKIIFAGKELEDTTIISECDLGQQSILHAV 674 (816)
Q Consensus 601 ~~~~M~V~Vk~~~g~t~~v~V~~~~TV~~LK~~I~~~~Gip~~~qrLif~Gk~L~d~~tL~~~~I~~~stl~lv 674 (816)
....|+|+||+ .|+++.++|++++||.+||++|+.++|||+++|||+|+|+.| |+.+|++|+|+++++|||+
T Consensus 14 ~~~~~~i~Vk~-~g~~~~i~v~~~~TV~~LK~~I~~~tgip~~~QrL~~~Gk~L-dd~tL~~~~i~~g~~i~lv 85 (95)
T 1v86_A 14 GKELVDLKIIW-NKTKHDVKVPLDSTGSELKQKIHSITGLPPAMQKVMYKGLVP-EDKTLREIKVTSGAKIMVV 85 (95)
T ss_dssp CCCCEEEEEEE-TTEEEEEEECTTSBHHHHHHHHHHHHCSCSTTCCCBSSSBCC-SSSBHHHHCCCTTEEEEEC
T ss_pred CCceEEEEEEE-CCEEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEECCeeC-CcCcHHHCCCCCCCEEEEE
Confidence 34569999996 689999999999999999999999999999999999999999 5559999999999999999
No 91
>2dzj_A Synaptic glycoprotein SC2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.36 E-value=6.2e-13 Score=117.24 Aligned_cols=70 Identities=14% Similarity=0.271 Sum_probs=65.1
Q ss_pred ceEEEEEecCCceE--EE-EcCCCCcHHHHHHHHhh-hhCCCCCCeEEEEC--CeecCCCccccccCCCCCCEEEE
Q psy15035 604 TLMINIKSNTGNTV--CV-NLDPASDIRNVKEMIAP-KLGLKYEEVKIIFA--GKELEDTTIISECDLGQQSILHA 673 (816)
Q Consensus 604 ~M~V~Vk~~~g~t~--~v-~V~~~~TV~~LK~~I~~-~~Gip~~~qrLif~--Gk~L~d~~tL~~~~I~~~stl~l 673 (816)
.|+|+||+++|+.+ .+ +|++++||++||++|++ +.|+||++|||+|. |+.|+|+.||++|+|.++++||+
T Consensus 10 ~M~I~Vk~~~g~~~~~~l~~v~~~~TV~~lK~~I~~~~~~i~~~~QrL~~~~~Gk~L~D~~tL~~y~i~~~stl~~ 85 (88)
T 2dzj_A 10 HYEVEILDAKTREKLCFLDKVEPHATIAEIKNLFTKTHPQWYPARQSLRLDPKGKSLKDEDVLQKLPVGTTATLYF 85 (88)
T ss_dssp CEEEEEEESSSCCCCEEEEEECSSCBHHHHHHHHHHHCSSSCTTTCCEESSTTSCCCCTTCBTTTSSCCSEEEEEE
T ss_pred EEEEEEECCCCCEEeeEEeEcCCCCcHHHHHHHHHHHhcCCChHHeEEEecCCCcCcCCCCCHHHcCCCCCCEEEE
Confidence 49999999988775 58 99999999999999999 58999999999977 99999999999999999999886
No 92
>2kjr_A CG11242; UBL, ubiquitin, ubiquitin-like, structural genomics, PSI-2, protein structure initiative; NMR {Drosophila melanogaster}
Probab=99.35 E-value=1.6e-12 Score=116.25 Aligned_cols=74 Identities=12% Similarity=0.128 Sum_probs=67.0
Q ss_pred CCCceEEEEEecCC--ceEEEEcCCCCcHHHHHHHHhhhhCCCCCCeEEEEC--Ce---ec-CCCccccccCCCCCCEEE
Q psy15035 601 PDNTLMINIKSNTG--NTVCVNLDPASDIRNVKEMIAPKLGLKYEEVKIIFA--GK---EL-EDTTIISECDLGQQSILH 672 (816)
Q Consensus 601 ~~~~M~V~Vk~~~g--~t~~v~V~~~~TV~~LK~~I~~~~Gip~~~qrLif~--Gk---~L-~d~~tL~~~~I~~~stl~ 672 (816)
.+..+.|+|+...+ ++++++|++++||++||++|+.++|||+++|||+|+ |+ .| +|+++|++|+|++|++||
T Consensus 12 ~~~~v~l~It~s~~~~~~~~~~v~~~~TV~~LK~kI~~~~GiP~~~QrL~~~~~g~~~~~L~~D~~tL~~Y~i~~gstih 91 (95)
T 2kjr_A 12 KSDFIKVNVSNSHNDAVAFEVKLAKDLTVAQLKTKLEILTGGCAGTMKVQVFKGDTCVSTMDNNDAQLGYYANSDGLRLH 91 (95)
T ss_dssp CCCEEEEEEEESSCSCEEEEEEEETTCBHHHHHHHHHHHHCSCTTTEEEEEEETTEEEEECCCTTSBHHHHCCSSSCEEE
T ss_pred CCCeEEEEEEECCCCceEEEEEeCccCHHHHHHHHHHHHHCcCHHHeEEEEecCCcccceeCCCCCCHhHCCcCCCCEEE
Confidence 45678999998766 488999999999999999999999999999999998 55 55 899999999999999999
Q ss_pred Ee
Q psy15035 673 AV 674 (816)
Q Consensus 673 lv 674 (816)
|+
T Consensus 92 lv 93 (95)
T 2kjr_A 92 VV 93 (95)
T ss_dssp EE
T ss_pred EE
Confidence 98
No 93
>3ai5_A Yeast enhanced green fluorescent protein, ubiquit; ubiquitin, fusion protein, fluore protein, transcription; HET: CR2; 1.40A {Aequorea victoria} PDB: 3ako_B*
Probab=99.34 E-value=1.8e-12 Score=138.76 Aligned_cols=77 Identities=34% Similarity=0.577 Sum_probs=72.1
Q ss_pred CCCceEEEEEecCCceEEEEcCCCCcHHHHHHHHhhhhCCCCCCeEEEECCeecCCCccccccCCCCCCEEEEe-eCC
Q psy15035 601 PDNTLMINIKSNTGNTVCVNLDPASDIRNVKEMIAPKLGLKYEEVKIIFAGKELEDTTIISECDLGQQSILHAV-KSS 677 (816)
Q Consensus 601 ~~~~M~V~Vk~~~g~t~~v~V~~~~TV~~LK~~I~~~~Gip~~~qrLif~Gk~L~d~~tL~~~~I~~~stl~lv-r~~ 677 (816)
.+..|+|+||+++|+++.++|++++||++||++|++++|+|+++|||+|+|+.|+|+.+|++|+|+++++|||+ |++
T Consensus 230 ~~~~MqI~VKtl~Gk~~~leV~~s~TV~dLK~kI~~~~GIp~~~QRLi~~Gk~L~D~~TLsdygI~~gstL~LvlRLr 307 (307)
T 3ai5_A 230 ITGSMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLR 307 (307)
T ss_dssp SCCCEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTSBTGGGTCCTTCEEEEEC---
T ss_pred CCCeEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEeCCeecCCCCCHHHcCCCCCCEEEEEEeCC
Confidence 56789999999999999999999999999999999999999999999999999999999999999999999999 764
No 94
>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A
Probab=99.33 E-value=2e-12 Score=142.22 Aligned_cols=80 Identities=21% Similarity=0.388 Sum_probs=73.6
Q ss_pred CCceEEEEEecCCceEEEEcCCCCcHHHHHHHHhh---hhCCCCCCeEEEECCeecCCCccccccCCCCCCEE-EEe-eC
Q psy15035 602 DNTLMINIKSNTGNTVCVNLDPASDIRNVKEMIAP---KLGLKYEEVKIIFAGKELEDTTIISECDLGQQSIL-HAV-KS 676 (816)
Q Consensus 602 ~~~M~V~Vk~~~g~t~~v~V~~~~TV~~LK~~I~~---~~Gip~~~qrLif~Gk~L~d~~tL~~~~I~~~stl-~lv-r~ 676 (816)
+..|+|+||+++|++|.|+|++++||.+||++|+. ++|||+++|||||+||.|+|+.+|++|+|+++++| ||+ |.
T Consensus 5 ~~~M~I~VKtl~Gk~~~leV~~~~TV~~LK~~I~~~~~~~gip~~~QrLiy~GK~L~D~~tL~dygI~~gstIv~lv~k~ 84 (368)
T 1oqy_A 5 SSAVTITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDYRIDEKNFVVVMVTKT 84 (368)
T ss_dssp -CCCCEEEEETTTEEEEECCCTTCBHHHHHHHHHHHTCSSSCCSTEEEEESSSSEECSSSBTTTTCCCTTSCEEEEEECC
T ss_pred CceEEEEEEeCCCCEEEEEeCCCChHHHHHHHHHHHhCcCCCChhheEEEECCeecCCcCCHHHcCCCCCCEEEEEEecC
Confidence 35799999999999999999999999999999999 68899999999999999999999999999999998 666 88
Q ss_pred CCCCC
Q psy15035 677 SPENN 681 (816)
Q Consensus 677 ~gg~~ 681 (816)
+++..
T Consensus 85 ~~~~~ 89 (368)
T 1oqy_A 85 KAGQG 89 (368)
T ss_dssp CSSSC
T ss_pred CCCCC
Confidence 77754
No 95
>2kj6_A Tubulin folding cofactor B; methods development, NESG, solution PSI-2, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=99.31 E-value=4.3e-12 Score=113.74 Aligned_cols=74 Identities=15% Similarity=0.177 Sum_probs=67.0
Q ss_pred CCCceEEEEEecCC--ceEEEEcCCCCcHHHHHHHHhhhhCCCCCCeEEEECCe---e----cCCCccccccCCCCCCEE
Q psy15035 601 PDNTLMINIKSNTG--NTVCVNLDPASDIRNVKEMIAPKLGLKYEEVKIIFAGK---E----LEDTTIISECDLGQQSIL 671 (816)
Q Consensus 601 ~~~~M~V~Vk~~~g--~t~~v~V~~~~TV~~LK~~I~~~~Gip~~~qrLif~Gk---~----L~d~~tL~~~~I~~~stl 671 (816)
.+..+.|+|+.... +.+.++|++++||++||++|+.++||||++|||+|.|+ . ++|+++|++|+|++|++|
T Consensus 11 ~~~~v~l~It~s~~~~~~~e~~v~~~~TV~~LK~kIe~~~Gip~~~QrLi~~g~~g~~~~~L~~D~~tL~~Y~I~~g~~I 90 (97)
T 2kj6_A 11 GDDSVHLHITHANLKSFSADARFSPQMSVEAVKEKLWKKCGTSVNSMALELYDDSGSKVAVLSDDSRPLGFFSPFDGFRL 90 (97)
T ss_dssp CCCCEEEEEEETTSSCCCEEEEECTTCCHHHHHHHHHHHHCCCTTSEEEEEECSSSCBCCCSSGGGSCHHHHCCCSCCEE
T ss_pred CCceEEEEEEECCCCceEEEEEeCCCChHHHHHHHHHHHHCcCHHHeEEEEecCCCcccceecCCcCCHHHCCCCCCCEE
Confidence 56778899988654 47999999999999999999999999999999999884 3 489999999999999999
Q ss_pred EEe
Q psy15035 672 HAV 674 (816)
Q Consensus 672 ~lv 674 (816)
||+
T Consensus 91 hlv 93 (97)
T 2kj6_A 91 HII 93 (97)
T ss_dssp EEE
T ss_pred EEE
Confidence 999
No 96
>4b6w_A Tubulin-specific chaperone; CAP-Gly, ubiquitin-like; HET: MSE; 2.35A {Trypanosoma brucei brucei strain 927}
Probab=99.30 E-value=2.9e-12 Score=112.40 Aligned_cols=70 Identities=11% Similarity=0.178 Sum_probs=62.5
Q ss_pred eEEEEEec--CCceEEEEcCCCCcHHHHHHHHhhhhCCCCCCeEEEE-------CCeecCCCccccccCCCCCCEEEEe
Q psy15035 605 LMINIKSN--TGNTVCVNLDPASDIRNVKEMIAPKLGLKYEEVKIIF-------AGKELEDTTIISECDLGQQSILHAV 674 (816)
Q Consensus 605 M~V~Vk~~--~g~t~~v~V~~~~TV~~LK~~I~~~~Gip~~~qrLif-------~Gk~L~d~~tL~~~~I~~~stl~lv 674 (816)
+.|.|... +++.+.+.+++++||++||++|+.++|+||++|||+| .|+.|+|+++|++|||++|++|||+
T Consensus 3 V~v~iths~~~~~~~E~r~~~s~TI~~lK~ki~~~~Gip~~~QrLi~~~~~~~~~g~~l~d~~tL~~Y~i~~g~~ihlv 81 (86)
T 4b6w_A 3 VKVSLTHSASRMRVPEKRYGLAQTIESIKENVFTHFATPPEYMQLQLIDDRGITIEKNMANDKQLGYYQCRDEFVIHVV 81 (86)
T ss_dssp EEEEEEETTCSCCEEEEEEETTSBHHHHHHHHHTTSCCCGGGEEEEEECTTSCEEESSCCTTSBGGGGTCCTTCEEEEE
T ss_pred EEEEEEEcCCCCeEEEEEcCccCcHHHHHHHHHHHHCCCHHHEEEEEecCCCCceeeEcCCCCCHHHCCCCCCCEEEEE
Confidence 45666543 4566789999999999999999999999999999996 6899999999999999999999999
No 97
>2a7l_A Hypothetical ubiquitin-conjugating enzyme LOC55284; structural genomics consortium, (SGC), ligase; 1.82A {Homo sapiens} SCOP: d.20.1.1
Probab=99.29 E-value=1.2e-12 Score=124.58 Aligned_cols=106 Identities=17% Similarity=0.268 Sum_probs=76.0
Q ss_pred hhHHHHHHHhhhcCCCCCcceeccccCCCCcccceEEEEeCCCCCCCCCcchhhhhchhhhhhhhhhhheeccCCCCCce
Q psy15035 526 NFRLLEELEHGQRGVGDGTISWGLENDDDMTLTHWTGMIIGPPRTSTTGHIMDTIIGYIMSVLNEILHLFWISRKPDNTL 605 (816)
Q Consensus 526 ~~~l~~el~~~~~~~~~~~~s~gl~~~~d~~l~~w~~~i~GP~~t~~e~~~~~l~i~f~~~yp~~~p~~~~~~~~~~~~M 605 (816)
.+||++||++++++++++ +++++..+ +.++++|.++|.||++||||||+|.+.|.||++||.+||++. |...+- ..
T Consensus 24 ~~RL~kEl~~l~~~~~~g-i~v~~~~~-~~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~v~-F~T~i~-~~ 99 (136)
T 2a7l_A 24 QKRLQKELLALQNDPPPG-MTLNEKSV-QNSITQWIVDMEGAPGTLYEGEKFQLLFKFSSRYPFDSPQVM-FTGENI-PV 99 (136)
T ss_dssp CHHHHHHHHHHHHSCCTT-CCCCTTCC-CCSCEEEEEEEECCTTSTTTTCEEEEEEEECTTTTTSCCEEE-EESSCC-CC
T ss_pred HHHHHHHHHHHHhCCCCC-EEEEEeeC-ccccceeEEEEECCCCCccccEEEEEEEECCCCCCCCCCEEE-EeCCCc-CC
Confidence 489999999999996655 77654333 336779999999999999999999999999999999999994 665420 00
Q ss_pred EEEEEecCCceEEEEc-----CCCCcHHHHHHHHhhh
Q psy15035 606 MINIKSNTGNTVCVNL-----DPASDIRNVKEMIAPK 637 (816)
Q Consensus 606 ~V~Vk~~~g~t~~v~V-----~~~~TV~~LK~~I~~~ 637 (816)
.=.| ..+|+ +.+++ .|..||..+-..|+..
T Consensus 100 HPNV-~~~G~-ICL~iL~~~WsP~~ti~~vL~sI~sl 134 (136)
T 2a7l_A 100 HPHV-YSNGH-ICLSILTEDWSPALSVQSVCLSIISM 134 (136)
T ss_dssp BTTB-CTTCB-BCCGGGTTTCCTTSCHHHHHHHHHHH
T ss_pred CccC-CCCCe-EEchhcCCCCCCCCcHHHHHHHHHHH
Confidence 0012 12343 34443 2666788776666543
No 98
>1fxt_A Ubiquitin-conjugating enzyme E2-24 kDa; ligase; NMR {Saccharomyces cerevisiae} SCOP: d.20.1.1 PDB: 1fzy_A
Probab=99.25 E-value=2.3e-12 Score=124.83 Aligned_cols=109 Identities=20% Similarity=0.314 Sum_probs=81.1
Q ss_pred hhhHHHHHHHhhhcCCCCCcceeccccCCCCcccceEEEEeCCCCCCCCCcchhhhhchhhhhhhhhhhheeccCCCCCc
Q psy15035 525 RNFRLLEELEHGQRGVGDGTISWGLENDDDMTLTHWTGMIIGPPRTSTTGHIMDTIIGYIMSVLNEILHLFWISRKPDNT 604 (816)
Q Consensus 525 ~~~~l~~el~~~~~~~~~~~~s~gl~~~~d~~l~~w~~~i~GP~~t~~e~~~~~l~i~f~~~yp~~~p~~~~~~~~~~~~ 604 (816)
+.+||++||++++++++.| ++++..+++ ++++|.++|.||++|||+||+|.+.|.||++||.+||.+. |...+-..
T Consensus 2 ~~~RL~~El~~l~~~~~~~-i~~~~~~~~--~l~~w~~~I~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~-f~t~i~HP 77 (149)
T 1fxt_A 2 RAKRIMKEIQAVKDDPAAH-ITLEFVSES--DIHHLKGTFLGPPGTPYEGGKFVVDIEVPMEYPFKPPKMQ-FDTKVYHP 77 (149)
T ss_dssp CHHHHHHHHHHHHHCGGGC-CEEEESSSS--CSSEEEEEEECCSSSTTCSSEEEEEEECCTTTTSSCCEEE-ESSCCCBT
T ss_pred hHHHHHHHHHHHHhCCCCC-EEEEECCCC--CceEEEEEEECCCCCCcCCcEEEEEEECCCCCCCCCCEEE-EeCCCccC
Confidence 5789999999999996555 888765433 4669999999999999999999999999999999999995 76641000
Q ss_pred eEEEEEecCCceEEEEc-----CCCCcHHHHHHHHhhhhCCC
Q psy15035 605 LMINIKSNTGNTVCVNL-----DPASDIRNVKEMIAPKLGLK 641 (816)
Q Consensus 605 M~V~Vk~~~g~t~~v~V-----~~~~TV~~LK~~I~~~~Gip 641 (816)
.|-..+|. +.+++ .|..||..+-..|.....-|
T Consensus 78 ---ni~~~~G~-iCl~iL~~~W~p~~~i~~vl~~i~~ll~~p 115 (149)
T 1fxt_A 78 ---NISSVTGA-ICLDILKNAWSPVITLKSALISLQALLQSP 115 (149)
T ss_dssp ---TBCSSSCC-BCCHHHHTSCCTTCCHHHHHHHHHHHHHSC
T ss_pred ---CCcCCCCe-EeCCcCCCCCCCCCcHHHHHHHHHHHHhCC
Confidence 12111343 34443 46778888888877766443
No 99
>2awf_A Ubiquitin-conjugating enzyme E2 G1; ligase, UBL conjugation pathway, structural genomics, structural genomics consortium SGC; 2.10A {Homo sapiens} SCOP: d.20.1.1 PDB: 1pzv_A
Probab=99.25 E-value=3.5e-12 Score=126.38 Aligned_cols=108 Identities=20% Similarity=0.349 Sum_probs=82.5
Q ss_pred chhhhHHHHHHHhhhcCCCCCcceeccccCCCCcccceEEEEeCCCCCCCCCcchhhhhchhhhhhhhhhhheeccCCC-
Q psy15035 523 VPRNFRLLEELEHGQRGVGDGTISWGLENDDDMTLTHWTGMIIGPPRTSTTGHIMDTIIGYIMSVLNEILHLFWISRKP- 601 (816)
Q Consensus 523 vp~~~~l~~el~~~~~~~~~~~~s~gl~~~~d~~l~~w~~~i~GP~~t~~e~~~~~l~i~f~~~yp~~~p~~~~~~~~~- 601 (816)
..+..||++||++++++++.+ +++++.+++ ++++|.++|+||++|+||||+|.+.|.||++||.+||+|. |...+
T Consensus 16 ~~~~~rL~kEl~~l~~~~~~g-i~~~p~~~~--nl~~W~~~I~GP~~TpYegG~f~~~i~fp~~YP~~PP~v~-F~T~i~ 91 (172)
T 2awf_A 16 PRGSLLLRRQLAELNKNPVEG-FSAGLIDDN--DLYRWEVLIIGPPDTLYEGGVFKAHLTFPKDYPLRPPKMK-FITEIW 91 (172)
T ss_dssp CTTHHHHHHHHHHHHHSCCTT-EEEEESSTT--CTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEE-ECSCCC
T ss_pred HHHHHHHHHHHHHHHhCCCCC-EEEEECCCc--cccccEEEEeCCCCCCcCCcEEEEEEECCcccCCCCCccc-ccCCCc
Confidence 678899999999999996555 898865544 4559999999999999999999999999999999999995 76651
Q ss_pred -CCceEEEEEecCCceEEEEc------------------CCCCcHHHHHHHHhhhhCCC
Q psy15035 602 -DNTLMINIKSNTGNTVCVNL------------------DPASDIRNVKEMIAPKLGLK 641 (816)
Q Consensus 602 -~~~M~V~Vk~~~g~t~~v~V------------------~~~~TV~~LK~~I~~~~Gip 641 (816)
++ | ..+|+ +.+++ .|..||..+-..|.....-|
T Consensus 92 HPN-----V-~~~G~-IClsiL~~~~~d~~~~~~~~~~WsP~~ti~~vL~sI~sll~~P 143 (172)
T 2awf_A 92 HPN-----V-DKNGD-VCISILHEPGEDKYGYEKPEERWLPIHTVETIMISVISMLADP 143 (172)
T ss_dssp CTT-----B-CTTCB-BCCGGGSCC---------CTTSCCTTCCHHHHHHHHHHHHSCC
T ss_pred cCC-----C-CCCCc-EehhhcCCcccccccccccCCCCCCcCcHHHHHHHHHHHHHCc
Confidence 11 1 12333 33332 35678988888887776543
No 100
>2io1_B Small ubiquitin-related modifier 3 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=99.24 E-value=1.1e-11 Score=110.40 Aligned_cols=80 Identities=9% Similarity=0.309 Sum_probs=75.0
Q ss_pred CCCceEEEEEecCCceEEEEcCCCCcHHHHHHHHhhhhCCCCCCeEEEECCeecCCCccccccCCCCCCEEEEe-eCCCC
Q psy15035 601 PDNTLMINIKSNTGNTVCVNLDPASDIRNVKEMIAPKLGLKYEEVKIIFAGKELEDTTIISECDLGQQSILHAV-KSSPE 679 (816)
Q Consensus 601 ~~~~M~V~Vk~~~g~t~~v~V~~~~TV~~LK~~I~~~~Gip~~~qrLif~Gk~L~d~~tL~~~~I~~~stl~lv-r~~gg 679 (816)
.+..|+|+|++.+|+.+.+.|.+++++..|+++++++.|+|++++|++|+|+.|.++.|+++|+++++++|+++ +.+||
T Consensus 4 ~~~~i~ikVk~~~g~~i~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~FdG~~l~~~~Tp~dl~medgD~Idv~~~~~GG 83 (94)
T 2io1_B 4 MNDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQTGG 83 (94)
T ss_dssp --CEEEEEEECTTSCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTEECCTTCCTTTTTCCTTCEEEEEECCEES
T ss_pred CCCeEEEEEECCCCCEEEEEECCCCHHHHHHHHHHHHhCCCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEEEeccCC
Confidence 35679999999999999999999999999999999999999999999999999999999999999999999999 88887
Q ss_pred C
Q psy15035 680 N 680 (816)
Q Consensus 680 ~ 680 (816)
.
T Consensus 84 ~ 84 (94)
T 2io1_B 84 V 84 (94)
T ss_dssp C
T ss_pred C
Confidence 3
No 101
>2fo3_A Ubiquitin-conjugating enzyme; SGC, UBC, structural genomics, structural genomics consortium, unknown function; 1.86A {Plasmodium vivax} SCOP: d.20.1.1
Probab=99.24 E-value=2.7e-12 Score=120.68 Aligned_cols=108 Identities=17% Similarity=0.255 Sum_probs=78.1
Q ss_pred hhhHHHHHHHhhhcCCCCCcceeccccCCCCcccceEEEEeCCCCCCCCCcchhhhhchhhhhhhhhhhheeccCCC-CC
Q psy15035 525 RNFRLLEELEHGQRGVGDGTISWGLENDDDMTLTHWTGMIIGPPRTSTTGHIMDTIIGYIMSVLNEILHLFWISRKP-DN 603 (816)
Q Consensus 525 ~~~~l~~el~~~~~~~~~~~~s~gl~~~~d~~l~~w~~~i~GP~~t~~e~~~~~l~i~f~~~yp~~~p~~~~~~~~~-~~ 603 (816)
+.+||++||++++++++.+ ++++. ++.++++|.++|.||++|+||||.|.+.|.||++||.+||++. |...+ -.
T Consensus 7 a~~RL~kEl~~l~~~~~~~-~~~~~---~~~~l~~w~~~i~GP~~tpYegg~f~~~i~fp~~YP~~PP~v~-f~t~i~~H 81 (125)
T 2fo3_A 7 ANYRIQKELHNFLNNPPIN-CTLDV---HPNNIRIWIVKYVGLENTIYANEVYKLKIIFPDDYPLKPPIVY-FLQKPPKH 81 (125)
T ss_dssp --CHHHHHHHHHHHSCCTT-EEEEE---CTTCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEE-ECSSCCCB
T ss_pred HHHHHHHHHHHHHhCCCCC-EEEEe---CcchhhhhheEEeCCCCCCcCCCEEEEEEEcCCCCCCCCCEEE-EeCCCCCC
Confidence 4579999999999996655 78764 2235679999999999999999999999999999999999995 66531 00
Q ss_pred ceEEEEEecCCceEEEEc-----CCCCcHHHHHHHHhhhhCCCC
Q psy15035 604 TLMINIKSNTGNTVCVNL-----DPASDIRNVKEMIAPKLGLKY 642 (816)
Q Consensus 604 ~M~V~Vk~~~g~t~~v~V-----~~~~TV~~LK~~I~~~~Gip~ 642 (816)
. .| ..+|+ +.+++ .+..||..+-..|+....-|.
T Consensus 82 P---nv-~~~G~-iCl~iL~~~W~P~~~i~~vl~si~~ll~~p~ 120 (125)
T 2fo3_A 82 T---HV-YSNGD-ICLSLLGDDYNPSLSISGLVLSIISMLSSAK 120 (125)
T ss_dssp T---TB-CTTSB-BCCGGGTTTCCTTCCHHHHHHHHHHHHC---
T ss_pred C---cC-CCCCE-EEchhcCCCCCCCCcHHHHHHHHHHHHhCcc
Confidence 0 12 12343 44443 366789998888877765544
No 102
>2ayv_A Ubiquitin-conjugating enzyme E2; structural genomics, structural genomics consortium, ubiquit ubiquitin-conjugating enzyme, SGC, ligase; 2.00A {Toxoplasma gondii} SCOP: d.20.1.1
Probab=99.24 E-value=3.9e-12 Score=125.28 Aligned_cols=116 Identities=22% Similarity=0.281 Sum_probs=82.3
Q ss_pred ccceeeecchhhhHHHHHHHhhhcCCCCCcceeccccCCCCcccceEEEEeCCCCCCCCCcchhhhhchhhhhhhhhhhh
Q psy15035 515 SGAKVLLIVPRNFRLLEELEHGQRGVGDGTISWGLENDDDMTLTHWTGMIIGPPRTSTTGHIMDTIIGYIMSVLNEILHL 594 (816)
Q Consensus 515 ~Ga~~ll~vp~~~~l~~el~~~~~~~~~~~~s~gl~~~~d~~l~~w~~~i~GP~~t~~e~~~~~l~i~f~~~yp~~~p~~ 594 (816)
.|-+-...-++.+||++||++++++++.+ ++++.. +.++++|.++|.||++||||||+|.+.|.||++||.+||+|
T Consensus 12 ~~~~~~~~~~~~~RL~kEl~~l~~~~~~g-i~~~~~---~~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~V 87 (166)
T 2ayv_A 12 SGRENLYFQGALKRINKELNDLSKDPPTN-CSAGPV---GDDMFHWQATIMGPEDSPYSGGVFFLNIHFPSDYPFKPPKV 87 (166)
T ss_dssp -------CTTHHHHHHHHHHHHHHSCCTT-EEEEEC---SSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEE
T ss_pred cccccccCcHHHHHHHHHHHHHHhCCCCC-EEEEEc---CCCcceeeEEEECCCCCCcCCCEEEEEEeCCCcCCCCCcee
Confidence 35555556678999999999999986555 888753 23567999999999999999999999999999999999999
Q ss_pred eeccCCCCCceEEEEEecCCceEEEEc-----CCCCcHHHHHHHHhhhhCC
Q psy15035 595 FWISRKPDNTLMINIKSNTGNTVCVNL-----DPASDIRNVKEMIAPKLGL 640 (816)
Q Consensus 595 ~~~~~~~~~~M~V~Vk~~~g~t~~v~V-----~~~~TV~~LK~~I~~~~Gi 640 (816)
. |...+-.. .| ..+|. +++++ .|..||..+-..|.....-
T Consensus 88 ~-F~T~i~HP---NI-~~~G~-ICL~iL~~~WsP~~ti~~vL~sI~sll~~ 132 (166)
T 2ayv_A 88 N-FTTKIYHP---NI-NSQGA-ICLDILKDQWSPALTISKVLLSISSLLTD 132 (166)
T ss_dssp E-ECSCCCBT---TB-CTTCB-BCCGGGTTTCCTTCCHHHHHHHHHHHHHS
T ss_pred e-eccCCcCC---cC-CCCCe-EEcccccccCCCCCcHHHHHHHHHHHHhC
Confidence 5 76651000 12 12343 44443 3667888888887776543
No 103
>3rcz_B SUMO-conjugating enzyme UBC9; SUMO-like domain, protein:protein interaction, protein ligase complex; HET: DNA; 1.90A {Schizosaccharomyces pombe} SCOP: d.20.1.1
Probab=99.24 E-value=3.7e-12 Score=125.07 Aligned_cols=112 Identities=21% Similarity=0.214 Sum_probs=85.3
Q ss_pred chhhhHHHHHHHhhhcCCCCCcceeccccC--CCCcccceEEEEeCCCCCCCCCcchhhhhchhhhhhhhhhhheeccCC
Q psy15035 523 VPRNFRLLEELEHGQRGVGDGTISWGLEND--DDMTLTHWTGMIIGPPRTSTTGHIMDTIIGYIMSVLNEILHLFWISRK 600 (816)
Q Consensus 523 vp~~~~l~~el~~~~~~~~~~~~s~gl~~~--~d~~l~~w~~~i~GP~~t~~e~~~~~l~i~f~~~yp~~~p~~~~~~~~ 600 (816)
+....||++||+++++++++| ++++..++ ++++|++|.++|.||++||||||+|.+.|.||++||.+||+|. |...
T Consensus 9 ~~~~~RL~kEl~~l~~~~p~g-i~~~p~~~~d~~~nl~~W~~~I~Gp~~Tpyegg~f~l~i~fp~~YP~~pP~v~-F~t~ 86 (163)
T 3rcz_B 9 SLCKTRLQEERKQWRRDHPFG-FYAKPCKSSDGGLDLMNWKVGIPGKPKTSWEGGLYKLTMAFPEEYPTRPPKCR-FTPP 86 (163)
T ss_dssp CHHHHHHHHHHHHHHHSCCTT-CEEEEEECTTSSEEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEE-ESSC
T ss_pred HHHHHHHHHHHHHHHhCCCCC-EEEEEccCcCCCCCccEEEEEEECCCCCCcCCCEEEEEEECCCCCCCCCCEEE-EeCC
Confidence 456789999999999998777 78877543 3358899999999999999999999999999999999999994 7665
Q ss_pred CCCceEEEEEecCCceEEEEc-------CCCCcHHHHHHHHhhhhCCC
Q psy15035 601 PDNTLMINIKSNTGNTVCVNL-------DPASDIRNVKEMIAPKLGLK 641 (816)
Q Consensus 601 ~~~~M~V~Vk~~~g~t~~v~V-------~~~~TV~~LK~~I~~~~Gip 641 (816)
+-.. .| ..+|+ +.+++ .+..||..+-..|.....-|
T Consensus 87 i~HP---nV-~~~G~-iCl~iL~~~~~W~p~~ti~~vL~~i~~ll~~P 129 (163)
T 3rcz_B 87 LFHP---NV-YPSGT-VCLSILNEEEGWKPAITIKQILLGIQDLLDDP 129 (163)
T ss_dssp CCST---TB-CTTSB-BCCGGGCTTTTCCTTCCHHHHHHHHHHHHTSC
T ss_pred CccC---CC-CCCCc-EeccccCCCCCcCCcCcHHHHHHHHHHHHhCC
Confidence 1100 12 12343 44443 35668999888888776543
No 104
>2h2y_A Ubiquitin-conjugating enzyme; structural genomics, unknown function, structural genomics consortium, SGC; 2.80A {Plasmodium falciparum 3D7}
Probab=99.23 E-value=4e-12 Score=121.23 Aligned_cols=109 Identities=16% Similarity=0.255 Sum_probs=80.9
Q ss_pred hhhhHHHHHHHhhhcCCCCCcceeccccCCCCcccceEEEEeCCCCCCCCCcchhhhhchhhhhhhhhhhheeccCCC-C
Q psy15035 524 PRNFRLLEELEHGQRGVGDGTISWGLENDDDMTLTHWTGMIIGPPRTSTTGHIMDTIIGYIMSVLNEILHLFWISRKP-D 602 (816)
Q Consensus 524 p~~~~l~~el~~~~~~~~~~~~s~gl~~~~d~~l~~w~~~i~GP~~t~~e~~~~~l~i~f~~~yp~~~p~~~~~~~~~-~ 602 (816)
.+.+||++||++++++++.+ ++++.. +.++++|.++|.||++|+||||+|.+.|.||++||.+||.+. |...+ -
T Consensus 20 ~~~~RL~kEl~~l~~~~~~~-~~~~~~---~~nl~~W~~~I~GP~~tpYegg~f~~~i~fp~~YP~~PP~v~-f~t~i~~ 94 (136)
T 2h2y_A 20 NANYRIQKELNNFLKNPPIN-CTIDVH---PSNIRIWIVQYVGLENTIYANEVYKIKIIFPDNYPLKPPIVY-FLQKPPK 94 (136)
T ss_dssp SHHHHHHHHHHHHHHSCCTT-EEEEEC---TTCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEE-ECSSCCC
T ss_pred HHHHHHHHHHHHHHhCCCCC-eEEEec---cccccccEEEEECCCCCceeCCEEEEEEEeCCCCCCCCCEEE-EeCCCCC
Confidence 35789999999999997655 787642 235679999999999999999999999999999999999995 66531 1
Q ss_pred CceEEEEEecCCceEEEEc-----CCCCcHHHHHHHHhhhhCCCC
Q psy15035 603 NTLMINIKSNTGNTVCVNL-----DPASDIRNVKEMIAPKLGLKY 642 (816)
Q Consensus 603 ~~M~V~Vk~~~g~t~~v~V-----~~~~TV~~LK~~I~~~~Gip~ 642 (816)
.. .| ..+|+ +.+++ .|..||..+-..|.....-|.
T Consensus 95 HP---nv-~~~G~-ICl~iL~~~WsP~~ti~~vL~si~sll~~p~ 134 (136)
T 2h2y_A 95 HT---HV-YSNGD-ICLSVLGDDYNPSLSISGLILSIISMLSSAK 134 (136)
T ss_dssp CT---TB-CTTCC-BCCGGGTTTCCTTCCHHHHHHHHHHHHSSSC
T ss_pred CC---cC-CCCCE-EECccccCCCCCCCcHHHHHHHHHHHHhCcC
Confidence 00 12 12344 34443 366789888888777665443
No 105
>1wf9_A NPL4 family protein; beta-grAsp fold like domain, hypothetical protein, structural genomics, NPPSFA; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=99.23 E-value=1.3e-11 Score=112.92 Aligned_cols=71 Identities=18% Similarity=0.295 Sum_probs=66.4
Q ss_pred CceEEEEEecCCceEEEEcC-CCCcHHHHHHHHhhhhCCCCCCeEEEECCe-----------e----cCCCccccccCCC
Q psy15035 603 NTLMINIKSNTGNTVCVNLD-PASDIRNVKEMIAPKLGLKYEEVKIIFAGK-----------E----LEDTTIISECDLG 666 (816)
Q Consensus 603 ~~M~V~Vk~~~g~t~~v~V~-~~~TV~~LK~~I~~~~Gip~~~qrLif~Gk-----------~----L~d~~tL~~~~I~ 666 (816)
..|+|+||+.+|+. .|+|+ +++||.+||++|+.++|+|+++|+|+|.|+ . ++|+.+|++|||+
T Consensus 6 ~~M~irvrs~~G~~-~v~v~~~~~Tv~~LK~kI~~~~gip~~~QrL~~~~~~~~~k~~~~~~~l~~~l~d~~tL~~~gi~ 84 (107)
T 1wf9_A 6 SGTMLRVRSRDGLE-RVSVDGPHITVSQLKTLIQDQLQIPIHNQTLSTNRNLLLAKSPSDFLAFTDMADPNLRISSLNLA 84 (107)
T ss_dssp CCEEEEEECSSCEE-EEEECCTTSBHHHHHHHHHHHSCCCTTTCCCBSSGGGGTCCSHHHHTTCCSSCCTTCBGGGTCCC
T ss_pred CeEEEEEECCCCCE-EEEECCCCCcHHHHHHHHHHHhCcCcccCEEEECCccccccCccccccccccCCCCCCHHHCCCC
Confidence 45999999999975 79999 999999999999999999999999999998 4 5899999999999
Q ss_pred CCCEEEEe
Q psy15035 667 QQSILHAV 674 (816)
Q Consensus 667 ~~stl~lv 674 (816)
+|++|||+
T Consensus 85 ~G~~L~l~ 92 (107)
T 1wf9_A 85 HGSMVYLA 92 (107)
T ss_dssp TTCEEECC
T ss_pred CCCEEEEE
Confidence 99999999
No 106
>1yh2_A HSPC150 protein similar to ubiquitin-conjugating enzyme; structural genomics consortium, HSCP150, ligase, SGC; 2.00A {Homo sapiens} SCOP: d.20.1.1
Probab=99.22 E-value=4.5e-12 Score=125.36 Aligned_cols=108 Identities=19% Similarity=0.173 Sum_probs=80.0
Q ss_pred hhhhHHHHHHHhhhcCCCCCcceeccccCCCCcccceEEEEeCCCCCCCCCcchhhhhchhhhhhhhhhhheeccCCCCC
Q psy15035 524 PRNFRLLEELEHGQRGVGDGTISWGLENDDDMTLTHWTGMIIGPPRTSTTGHIMDTIIGYIMSVLNEILHLFWISRKPDN 603 (816)
Q Consensus 524 p~~~~l~~el~~~~~~~~~~~~s~gl~~~~d~~l~~w~~~i~GP~~t~~e~~~~~l~i~f~~~yp~~~p~~~~~~~~~~~ 603 (816)
.+.+||++||++++++++.| ++++. ++.++++|.++|.||++|+||||+|.+.|.||++||++||+|. |...+-.
T Consensus 4 ~~~~RL~kEl~~l~~~~~~g-i~~~~---~~~~l~~w~~~I~GP~~tpYegg~f~~~i~fp~~YP~~PP~v~-f~t~i~H 78 (169)
T 1yh2_A 4 QRASRLKRELHMLATEPPPG-ITCWQ---DKDQMDDLRAQILGGANTPYEKGVFKLEVIIPERYPFEPPQIR-FLTPIYH 78 (169)
T ss_dssp HHHHHHHHHHHHHHHSCCTT-EEEEE---SSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEE-ESSCCCB
T ss_pred HHHHHHHHHHHHHHhCCCCC-EEEEe---CCCchheEEEEEECCCCCCccCCEEEEEEEeCCCCCCCCcEEE-eecCCcc
Confidence 46899999999999996655 88864 2336679999999999999999999999999999999999995 7665100
Q ss_pred ceEEEEEecCCceEEEEc---------CCCCcHHHHHHHHhhhhCCC
Q psy15035 604 TLMINIKSNTGNTVCVNL---------DPASDIRNVKEMIAPKLGLK 641 (816)
Q Consensus 604 ~M~V~Vk~~~g~t~~v~V---------~~~~TV~~LK~~I~~~~Gip 641 (816)
. .|- .+|. +++++ .+..||..+-..|.....-|
T Consensus 79 P---Nv~-~~G~-iCl~iL~~~~~~~W~p~~~i~~vL~si~~ll~~p 120 (169)
T 1yh2_A 79 P---NID-SAGR-ICLDVLKLPPKGAWRPSLNIATVLTSIQLLMSEP 120 (169)
T ss_dssp T---TBC-TTCB-BCCGGGSCTTTSCCCTTSCHHHHHHHHHHHHHSC
T ss_pred c---cCC-cCCe-EecccccCCcccCCCCCCcHHHHHHHHHHHHhCC
Confidence 0 121 2343 34432 25668888877777665433
No 107
>2ucz_A UBC7, ubiquitin conjugating enzyme; ubiquitin conjugation, ligase, yeast; 2.93A {Saccharomyces cerevisiae} SCOP: d.20.1.1
Probab=99.21 E-value=6.7e-12 Score=123.65 Aligned_cols=105 Identities=21% Similarity=0.378 Sum_probs=79.1
Q ss_pred hhhhHHHHHHHhhhcCCCCCcceeccccCCCCcccceEEEEeCCCCCCCCCcchhhhhchhhhhhhhhhhheeccCCC--
Q psy15035 524 PRNFRLLEELEHGQRGVGDGTISWGLENDDDMTLTHWTGMIIGPPRTSTTGHIMDTIIGYIMSVLNEILHLFWISRKP-- 601 (816)
Q Consensus 524 p~~~~l~~el~~~~~~~~~~~~s~gl~~~~d~~l~~w~~~i~GP~~t~~e~~~~~l~i~f~~~yp~~~p~~~~~~~~~-- 601 (816)
.+..||++||++++++++.| ++++..+++ ++++|.++|.||++|+|+||+|.+.|.||++||.+||+|. |...+
T Consensus 4 ~a~~RL~kEl~~l~~~~~~g-i~~~~~~~~--~l~~w~~~i~GP~~tpYegg~f~~~i~fp~~YP~~PP~v~-f~t~i~H 79 (165)
T 2ucz_A 4 TAQKRLLKELQQLIKDSPPG-IVAGPKSEN--NIFIWDCLIQGPPDTPYADGVFNAKLEFPKDYPLSPPKLT-FTPSILH 79 (165)
T ss_dssp HHHHHHHHHHHHHHHSCCTT-EEEEESSSS--CCSEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEE-ESSCCSC
T ss_pred HHHHHHHHHHHHHHhCCCCC-EEEEECCCC--CccEEEEEEECCCCCCccCcEEEEEEECCccCCCCCCEEE-EeCCCcc
Confidence 35689999999999996655 888765444 4569999999999999999999999999999999999995 76652
Q ss_pred CCceEEEEEecCCceEEEEc------------------CCCCcHHHHHHHHhhhhC
Q psy15035 602 DNTLMINIKSNTGNTVCVNL------------------DPASDIRNVKEMIAPKLG 639 (816)
Q Consensus 602 ~~~M~V~Vk~~~g~t~~v~V------------------~~~~TV~~LK~~I~~~~G 639 (816)
++ | ..+|+ +.+++ .|..||..+-..|.....
T Consensus 80 PN-----v-~~~G~-iCl~iL~~~~~~~~~~~~~~~~W~p~~~i~~vL~si~~ll~ 128 (165)
T 2ucz_A 80 PN-----I-YPNGE-VCISILHSPGDDPNMYELAEERWSPVQSVEKILLSVMSMLS 128 (165)
T ss_dssp TT-----B-CTTSB-BCCGGGSCCCSCTTSTTTTTTSCCTTCCHHHHHHHHHHHHH
T ss_pred CC-----C-CCCCc-EeehhhCCccccccccCCCCCCCCCcCcHHHHHHHHHHHHh
Confidence 21 2 12343 34442 245678887777766654
No 108
>1v6e_A Cytoskeleton-associated protein 1; tubulin-specific chaperone B, tubulin folding cofactor B, microtubule, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.21 E-value=3.5e-11 Score=107.50 Aligned_cols=71 Identities=13% Similarity=0.162 Sum_probs=64.2
Q ss_pred ceEEEEEecCCc-eEEEEcCCCCcHHHHHHHHhhhhCCCCCCeEEEECC---ee----cCCCccccccCCCCCCEEEEe
Q psy15035 604 TLMINIKSNTGN-TVCVNLDPASDIRNVKEMIAPKLGLKYEEVKIIFAG---KE----LEDTTIISECDLGQQSILHAV 674 (816)
Q Consensus 604 ~M~V~Vk~~~g~-t~~v~V~~~~TV~~LK~~I~~~~Gip~~~qrLif~G---k~----L~d~~tL~~~~I~~~stl~lv 674 (816)
.+.|+|+..... .+.++|++++||++||++|+.++|+|+++|||+|+| +. ++|+.+|++|||++|++|||+
T Consensus 7 ~v~l~I~~~~~~~~~~~~v~~~~TV~~lK~ki~~~~gip~~~qrL~~~~~~g~~~~~l~~D~~tL~~y~i~~g~~l~v~ 85 (95)
T 1v6e_A 7 GVMVFISSSLNSFRSEKRYSRSLTIAEFKCKLELVVGSPASCMELELYGADDKFYSKLDQEDALLGSYPVDDGCRIHVI 85 (95)
T ss_dssp CEEEEEEETTSSSCEEEEECTTSBHHHHHHHHHHHTCSCTTTCBCEEECSSSCEEEECCCSSSBTTSSSCCTTCEEEEB
T ss_pred EEEEEEEECCCCeeEEEEcCccCHHHHHHHHHHHHHCCCHHHeEEEEeCCCCccccccCCCcCCHhHCCCCCCCEEEEE
Confidence 478889886543 689999999999999999999999999999999987 43 589999999999999999999
No 109
>2c4o_A Ubiquitin-conjugating enzyme E2 D2; thioesterification, ligase, UBL conjugation pathway; HET: CME; 1.94A {Homo sapiens} SCOP: d.20.1.1 PDB: 2clw_A* 2c4p_A
Probab=99.19 E-value=8.3e-12 Score=122.87 Aligned_cols=106 Identities=22% Similarity=0.293 Sum_probs=79.8
Q ss_pred hhhhHHHHHHHhhhcCCCCCcceeccccCCCCcccceEEEEeCCCCCCCCCcchhhhhchhhhhhhhhhhheeccCCCCC
Q psy15035 524 PRNFRLLEELEHGQRGVGDGTISWGLENDDDMTLTHWTGMIIGPPRTSTTGHIMDTIIGYIMSVLNEILHLFWISRKPDN 603 (816)
Q Consensus 524 p~~~~l~~el~~~~~~~~~~~~s~gl~~~~d~~l~~w~~~i~GP~~t~~e~~~~~l~i~f~~~yp~~~p~~~~~~~~~~~ 603 (816)
.+..||++||++++++++.+ ++++..+ .++++|.++|.||++|+||||+|.+.|.||++||.+||.|. |...+-.
T Consensus 19 ~~~~RL~kEl~~l~~~~~~g-i~~~p~~---~nl~~W~~~I~GP~~TpYegg~f~l~i~fp~~YP~~PP~v~-F~T~i~H 93 (165)
T 2c4o_A 19 MALKRIHKELNDLARDPPAQ-CSAGPVG---DDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVA-FTTRIYH 93 (165)
T ss_dssp HHHHHHHHHHHHHHSSCCTT-EEEEESS---SCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEE-ECSCCCB
T ss_pred HHHHHHHHHHHHHHhCCCCC-EEEEEcC---CCcceeEEEEECCCCCCccCceEEEEEECCCcCCCCCCEEE-EecCCcC
Confidence 46789999999999996555 8887532 35679999999999999999999999999999999999995 7665100
Q ss_pred ceEEEEEecCCceEEEEc-----CCCCcHHHHHHHHhhhhC
Q psy15035 604 TLMINIKSNTGNTVCVNL-----DPASDIRNVKEMIAPKLG 639 (816)
Q Consensus 604 ~M~V~Vk~~~g~t~~v~V-----~~~~TV~~LK~~I~~~~G 639 (816)
. .| ..+|. +.+++ .|..||..+-..|.....
T Consensus 94 P---nV-~~~G~-ICl~iL~~~W~P~~ti~~vL~si~~ll~ 129 (165)
T 2c4o_A 94 P---NI-NSNGS-ICLDILRSQWSPALTISKVLLSICSLLC 129 (165)
T ss_dssp T---TB-CTTCB-BCCGGGTTTCCTTCCHHHHHHHHHHHHH
T ss_pred C---cC-CCCCe-EeehhhcCCCCCcCcHHHHHHHHHHHHh
Confidence 0 12 12343 34443 356788888888777654
No 110
>3h8k_A Ubiquitin-conjugating enzyme E2 G2; alpha beta, all alpha, ligase, UBL conjugation pathway, endo reticulum, membrane, metal-binding; 1.80A {Homo sapiens} SCOP: d.20.1.1 PDB: 3fsh_A 2cyx_A 2kly_A
Probab=99.19 E-value=9.8e-12 Score=122.39 Aligned_cols=106 Identities=19% Similarity=0.327 Sum_probs=79.1
Q ss_pred hhHHHHHHHhhhcCCCCCcceeccccCCCCcccceEEEEeCCCCCCCCCcchhhhhchhhhhhhhhhhheeccCCCCCce
Q psy15035 526 NFRLLEELEHGQRGVGDGTISWGLENDDDMTLTHWTGMIIGPPRTSTTGHIMDTIIGYIMSVLNEILHLFWISRKPDNTL 605 (816)
Q Consensus 526 ~~~l~~el~~~~~~~~~~~~s~gl~~~~d~~l~~w~~~i~GP~~t~~e~~~~~l~i~f~~~yp~~~p~~~~~~~~~~~~M 605 (816)
..||++||+++++++++| ++++..+++ ++++|.++|.||++|+|+||+|.+.|.||++||.+||+|. |...+-..
T Consensus 5 ~~RL~kEl~~l~~~~~~g-i~~~~~~~~--nl~~w~~~I~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~-f~t~i~HP- 79 (164)
T 3h8k_A 5 LKRLMAEYKQLTLNPPEG-IVAGPMNEE--NFFEWEALIMGPEDTCFEFGVFPAILSFPLDYPLSPPKMR-FTCEMFHP- 79 (164)
T ss_dssp HHHHHHHHHHHHHSCCTT-EEEEESSTT--CTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEE-ECSCCCCT-
T ss_pred HHHHHHHHHHHHhCCCCC-EEEEECCCC--CccEEEEEEeCCCCCCCCCCEEEEEEECCCCCCCCCCEEE-EcCCCccC-
Confidence 579999999999996666 888765444 4569999999999999999999999999999999999984 76651100
Q ss_pred EEEEEecCCceEEEEc------------------CCCCcHHHHHHHHhhhhCC
Q psy15035 606 MINIKSNTGNTVCVNL------------------DPASDIRNVKEMIAPKLGL 640 (816)
Q Consensus 606 ~V~Vk~~~g~t~~v~V------------------~~~~TV~~LK~~I~~~~Gi 640 (816)
.| ..+|+ +.+++ .|..||..+-..|.....-
T Consensus 80 --NV-~~~G~-iCl~iL~~~~~~~~~~~~~~~~W~p~~ti~~vL~~i~~ll~~ 128 (164)
T 3h8k_A 80 --NI-YPDGR-VCISILHAPGDDPMGYESSAERWSPVQSVEKILLSVVSMLAE 128 (164)
T ss_dssp --TB-CTTSB-BCCGGGSCSCSCCCSCCTTCCCCCTTCCHHHHHHHHHHHHHS
T ss_pred --CC-CCCCc-EeeecccCcccccccccccccCCCCCCcHHHHHHHHHHHHcC
Confidence 12 12343 34432 2566888887777766543
No 111
>2gjd_A Ubiquitin-conjugating enzyme E2-18 kDa; UBC9P, SMT3, crystallography, ligase; 1.75A {Saccharomyces cerevisiae} PDB: 2eke_A 3ong_B
Probab=99.19 E-value=8.3e-12 Score=121.96 Aligned_cols=111 Identities=17% Similarity=0.193 Sum_probs=82.8
Q ss_pred hhhhHHHHHHHhhhcCCCCCcceeccccC--CCCcccceEEEEeCCCCCCCCCcchhhhhchhhhhhhhhhhheeccCCC
Q psy15035 524 PRNFRLLEELEHGQRGVGDGTISWGLEND--DDMTLTHWTGMIIGPPRTSTTGHIMDTIIGYIMSVLNEILHLFWISRKP 601 (816)
Q Consensus 524 p~~~~l~~el~~~~~~~~~~~~s~gl~~~--~d~~l~~w~~~i~GP~~t~~e~~~~~l~i~f~~~yp~~~p~~~~~~~~~ 601 (816)
.+..||++||++++++++.| ++++..++ ++.++++|.++|.||++|+|+||+|.+.|.||++||.+||.+. |...+
T Consensus 4 ~a~~RL~kE~~~l~~~~~~g-~~~~p~~~~~~~~nl~~w~~~I~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~-f~t~i 81 (157)
T 2gjd_A 4 LCLQRLQEERKKWRKDHPFG-FYAKPVKKADGSMDLQKWEAGIPGKEGTNWAGGVYPITVEYPNEYPSKPPKVK-FPAGF 81 (157)
T ss_dssp HHHHHHHHHHHHHHHCCCTT-CEEEEEECTTSCEEEEEEEEEEECCTTSTTTTBEEEEEEECCTTTTTSCCEEE-CCTTC
T ss_pred HHHHHHHHHHHHHHhCCCCC-EEEEeccccCCCCcccEEEEEEECCCCCCcCCeEEEEEEEcCCCCCCCCCeee-ccCCC
Confidence 35689999999999997766 77765432 2358889999999999999999999999999999999999995 76652
Q ss_pred CCceEEEEEecCCceEEEEc-------CCCCcHHHHHHHHhhhhCCC
Q psy15035 602 DNTLMINIKSNTGNTVCVNL-------DPASDIRNVKEMIAPKLGLK 641 (816)
Q Consensus 602 ~~~M~V~Vk~~~g~t~~v~V-------~~~~TV~~LK~~I~~~~Gip 641 (816)
-.. .| ..+|. +.+++ .|..||..+-..|.....-|
T Consensus 82 ~HP---nv-~~~G~-iCl~iL~~~~~W~p~~~i~~vl~~i~~ll~~p 123 (157)
T 2gjd_A 82 YHP---NV-YPSGT-ICLSILNEDQDWRPAITLKQIVLGVQDLLDSP 123 (157)
T ss_dssp CCT---TB-CTTSB-BCCGGGCTTTTCCTTCCHHHHHHHHHHHHTSC
T ss_pred ccC---CC-CCCCc-EeeecccCCCCCCCCCcHHHHHHHHHHHHhCC
Confidence 100 12 12444 34432 35678888888887776543
No 112
>2c2v_B Ubiquitin-conjugating enzyme E2 N; chaperone, heat-shock protein complex, E3 ligase, ubiquitiny TPR, heat-shock protein; 2.9A {Homo sapiens} SCOP: d.20.1.1
Probab=99.19 E-value=8.4e-12 Score=121.55 Aligned_cols=107 Identities=18% Similarity=0.189 Sum_probs=80.2
Q ss_pred hhhHHHHHHHhhhcCCCCCcceeccccCCCCcccceEEEEeCCCCCCCCCcchhhhhchhhhhhhhhhhheeccCCCCCc
Q psy15035 525 RNFRLLEELEHGQRGVGDGTISWGLENDDDMTLTHWTGMIIGPPRTSTTGHIMDTIIGYIMSVLNEILHLFWISRKPDNT 604 (816)
Q Consensus 525 ~~~~l~~el~~~~~~~~~~~~s~gl~~~~d~~l~~w~~~i~GP~~t~~e~~~~~l~i~f~~~yp~~~p~~~~~~~~~~~~ 604 (816)
...||++||++++++++.| ++++.. + .++++|.++|.||++|+||||+|.+.|.||++||.+||+|. |...+-..
T Consensus 6 ~~~RL~kEl~~l~~~~~~~-i~~~~~--~-~~l~~w~~~i~GP~~tpyegg~f~~~i~fp~~YP~~PP~v~-f~t~i~HP 80 (154)
T 2c2v_B 6 LPRRIIKETQRLLAEPVPG-IKAEPD--E-SNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPKVR-FMTKIYHP 80 (154)
T ss_dssp CCHHHHHHHHHHHHSCCTT-EEEEEC--S-SCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEE-ECSCCCCT
T ss_pred HHHHHHHHHHHHHhCCCCC-EEEEEC--C-CchheEEEEEECCCCCCcCCCeEEEEEEcCCCCCCCCCEEE-eecCcccC
Confidence 3579999999999996555 888753 2 26779999999999999999999999999999999999995 76651000
Q ss_pred eEEEEEecCCceEEEEc-----CCCCcHHHHHHHHhhhhCCC
Q psy15035 605 LMINIKSNTGNTVCVNL-----DPASDIRNVKEMIAPKLGLK 641 (816)
Q Consensus 605 M~V~Vk~~~g~t~~v~V-----~~~~TV~~LK~~I~~~~Gip 641 (816)
.| ..+|+ +.+++ .|..||..+-..|.....-|
T Consensus 81 ---nv-~~~G~-iCl~iL~~~W~p~~~i~~vl~~i~~ll~~p 117 (154)
T 2c2v_B 81 ---NV-DKLGR-ICLDILKDKWSPALQIRTVLLSIQALLSAP 117 (154)
T ss_dssp ---TB-CTTCB-BCCHHHHTSCCTTCCHHHHHHHHHHHTTSC
T ss_pred ---cC-ccCCe-EEchhccCCCCCCCcHHHHHHHHHHHHhCC
Confidence 11 12344 34432 36778988888887776543
No 113
>1t0y_A Tubulin folding cofactor B; ubiquitin-like, cytoskeleton, microtubule, CESG, structural genomics, protein structure initiative, PSI; NMR {Caenorhabditis elegans} SCOP: d.15.1.1
Probab=99.19 E-value=5.2e-11 Score=111.39 Aligned_cols=74 Identities=12% Similarity=0.236 Sum_probs=66.7
Q ss_pred CCCceEEEEEecCCc-eEEEEcCCCCcHHHHHHHHhhhhCCCCCCeEEEECC---e---e-cCCCccccccCCCCCCEEE
Q psy15035 601 PDNTLMINIKSNTGN-TVCVNLDPASDIRNVKEMIAPKLGLKYEEVKIIFAG---K---E-LEDTTIISECDLGQQSILH 672 (816)
Q Consensus 601 ~~~~M~V~Vk~~~g~-t~~v~V~~~~TV~~LK~~I~~~~Gip~~~qrLif~G---k---~-L~d~~tL~~~~I~~~stl~ 672 (816)
|+..+.|+|+...+. .+.+++++++||++||.+|+.++|||+++|||+|.| + . ++|+.+|++|||++|++||
T Consensus 3 m~~~v~l~V~~~~~~~~~e~~v~~~~TV~~lK~ki~~~~Gip~~~qrL~~~g~~~~~~~~l~~D~~tL~~y~i~~g~~ih 82 (122)
T 1t0y_A 3 MTEVYDLEITTNATDFPMEKKYPAGMSLNDLKKKLELVVGTTVDSMRIQLFDGDDQLKGELTDGAKSLKDLGVRDGYRIH 82 (122)
T ss_dssp CCCEEEEEEEESSCCSCEEEEEETTSBHHHHHHHHHHHHCCCTTTEEEEEECSSSSEEEECCCCSSBTTTTTCCSSEEEE
T ss_pred CCCEEEEEEEECCCCccEEEEeCCCCcHHHHHHHHHHHhCCCHHHeEEEEecCCCccccccCCCcCCHHHCCCCCCCEEE
Confidence 566789999986553 689999999999999999999999999999999987 4 3 4899999999999999999
Q ss_pred Ee
Q psy15035 673 AV 674 (816)
Q Consensus 673 lv 674 (816)
|+
T Consensus 83 vv 84 (122)
T 1t0y_A 83 AV 84 (122)
T ss_dssp EE
T ss_pred EE
Confidence 99
No 114
>2e2c_A Ubiquitin conjugating enzyme; ubiquitin conjugation, ubiquitin carrier protein, thioester ligase; 2.00A {Spisula solidissima} SCOP: d.20.1.1
Probab=99.18 E-value=8.3e-12 Score=121.87 Aligned_cols=108 Identities=18% Similarity=0.220 Sum_probs=80.8
Q ss_pred hhhhHHHHHHHhhhcCCCCCcceeccccCCCCcccceEEEEeCCCCCCCCCcchhhhhchhhhhhhhhhhheeccCCCCC
Q psy15035 524 PRNFRLLEELEHGQRGVGDGTISWGLENDDDMTLTHWTGMIIGPPRTSTTGHIMDTIIGYIMSVLNEILHLFWISRKPDN 603 (816)
Q Consensus 524 p~~~~l~~el~~~~~~~~~~~~s~gl~~~~d~~l~~w~~~i~GP~~t~~e~~~~~l~i~f~~~yp~~~p~~~~~~~~~~~ 603 (816)
.+.+||++||++++++++.| ++++.. + .++++|.++|.||++|+|+||+|.+.|.||++||.+||.|. |...+-.
T Consensus 9 ~~~~RL~kEl~~l~~~~~~~-i~~~p~--~-~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~-f~t~i~H 83 (156)
T 2e2c_A 9 SVSKRLQQELRTLLMSGDPG-ITAFPD--G-DNLFKWVATLDGPKDTVYESLKYKLTLEFPSDYPYKPPVVK-FTTPCWH 83 (156)
T ss_dssp CHHHHHHHHHHHHHHHCCTT-EEEEES--S-SCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEE-ESSCCCB
T ss_pred HHHHHHHHHHHHHHhCCCCC-EEEEEC--C-CCccEEEEEEECCCCCCcCCcEEEEEEECCCCCCCCCCEEE-EeCCccc
Confidence 46899999999999986555 888643 2 26679999999999999999999999999999999999995 7664110
Q ss_pred ceEEEEEecCCceEEEEc-----CCCCcHHHHHHHHhhhhCCC
Q psy15035 604 TLMINIKSNTGNTVCVNL-----DPASDIRNVKEMIAPKLGLK 641 (816)
Q Consensus 604 ~M~V~Vk~~~g~t~~v~V-----~~~~TV~~LK~~I~~~~Gip 641 (816)
. .|- .+|. +.+++ .|..||..+-..|.....-|
T Consensus 84 P---nv~-~~G~-iCl~iL~~~W~p~~~i~~vL~si~~ll~~p 121 (156)
T 2e2c_A 84 P---NVD-QSGN-ICLDILKENWTASYDVRTILLSLQSLLGEP 121 (156)
T ss_dssp T---TBC-TTCB-BCCGGGTTTCCTTCCHHHHHHHHHHHTTSC
T ss_pred C---CCc-cCce-EECccccccCCCCCcHHHHHHHHHHHHhCC
Confidence 0 121 1343 34443 35678988888887776543
No 115
>1ayz_A UBC2, ubiquitin-conjugating enzyme RAD6; ubiquitin conjugation; 2.60A {Saccharomyces cerevisiae} SCOP: d.20.1.1
Probab=99.18 E-value=7.3e-12 Score=123.71 Aligned_cols=108 Identities=19% Similarity=0.330 Sum_probs=81.2
Q ss_pred hhhhHHHHHHHhhhcCCCCCcceeccccCCCCcccceEEEEeCCCCCCCCCcchhhhhchhhhhhhhhhhheeccCCCCC
Q psy15035 524 PRNFRLLEELEHGQRGVGDGTISWGLENDDDMTLTHWTGMIIGPPRTSTTGHIMDTIIGYIMSVLNEILHLFWISRKPDN 603 (816)
Q Consensus 524 p~~~~l~~el~~~~~~~~~~~~s~gl~~~~d~~l~~w~~~i~GP~~t~~e~~~~~l~i~f~~~yp~~~p~~~~~~~~~~~ 603 (816)
++.+||++||++++++++.| +++... +.++++|.++|+||++|||+||+|.+.|.||++||.+||+|. |...+-.
T Consensus 4 ~a~~RL~kEl~~l~~~~~~g-i~~~p~---~~nl~~W~~~I~GP~~tpYegG~f~l~i~fp~~YP~~PP~v~-F~t~i~H 78 (169)
T 1ayz_A 4 PARRRLMRDFKRMKEDAPPG-VSASPL---PDNVMVWNAMIIGPADTPYEDGTFRLLLEFDEEYPNKPPHVK-FLSEMFH 78 (169)
T ss_dssp HHHHHHHHHHHHHHHSCCTT-EEEEEE---TTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEE-ESSCCCC
T ss_pred HHHHHHHHHHHHHHhCCCCC-EEEEec---CCccccceEEEECCCCCCcCCCEEEEEEECcccCCCCCCccc-cccCCcc
Confidence 46789999999999997666 776543 346789999999999999999999999999999999999995 7665110
Q ss_pred ceEEEEEecCCceEEEEc-----CCCCcHHHHHHHHhhhhCCC
Q psy15035 604 TLMINIKSNTGNTVCVNL-----DPASDIRNVKEMIAPKLGLK 641 (816)
Q Consensus 604 ~M~V~Vk~~~g~t~~v~V-----~~~~TV~~LK~~I~~~~Gip 641 (816)
. .|- .+|. +++++ .|..||..+-..|.....-|
T Consensus 79 P---NI~-~~G~-ICl~iL~~~WsP~~~i~~vL~si~~ll~~P 116 (169)
T 1ayz_A 79 P---NVY-ANGE-ICLDILQNRWTPTYDVASILTSIQSLFNDP 116 (169)
T ss_dssp T---TBC-TTSB-BCCGGGTTTCCTTCCHHHHHHHHHHHHTCC
T ss_pred C---CCC-CCCe-EeehhhccCCCCcCcHHHHHHHHHHHHhCC
Confidence 0 121 2343 44543 35678888888777776543
No 116
>2aak_A UBC1, ubiquitin conjugating enzyme; ubiquitin conjugation, ligase; 2.40A {Arabidopsis thaliana} SCOP: d.20.1.1 PDB: 1jas_A 2y4w_A 2yb6_A 2ybf_A 1q34_A 1z3d_A
Probab=99.18 E-value=7.9e-12 Score=121.51 Aligned_cols=108 Identities=21% Similarity=0.338 Sum_probs=80.8
Q ss_pred hhhhHHHHHHHhhhcCCCCCcceeccccCCCCcccceEEEEeCCCCCCCCCcchhhhhchhhhhhhhhhhheeccCCCCC
Q psy15035 524 PRNFRLLEELEHGQRGVGDGTISWGLENDDDMTLTHWTGMIIGPPRTSTTGHIMDTIIGYIMSVLNEILHLFWISRKPDN 603 (816)
Q Consensus 524 p~~~~l~~el~~~~~~~~~~~~s~gl~~~~d~~l~~w~~~i~GP~~t~~e~~~~~l~i~f~~~yp~~~p~~~~~~~~~~~ 603 (816)
++.+||++||+++++++++| +++.. ++.++++|.++|.||++|+|+||+|.+.|.||++||.+||.+. |...+-.
T Consensus 4 ~a~~RL~~E~~~l~~~~~~~-i~~~~---~~~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~-f~t~i~H 78 (152)
T 2aak_A 4 PARKRLMRDFKRLQQDPPAG-ISGAP---QDNNIMLWNAVIFGPDDTPWDGGTFKLSLQFSEDYPNKPPTVR-FVSRMFH 78 (152)
T ss_dssp HHHHHHHHHHHHHHHSCCTT-EEEEE---ETTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEE-ESSCCCC
T ss_pred HHHHHHHHHHHHHHhCCCCC-EEEEe---CCCCccEEEEEEeCCCCCCccCCEEEEEEECCCCCCCCCCEEE-EecCccc
Confidence 56789999999999997665 77653 2346789999999999999999999999999999999999995 7664110
Q ss_pred ceEEEEEecCCceEEEEc-----CCCCcHHHHHHHHhhhhCCC
Q psy15035 604 TLMINIKSNTGNTVCVNL-----DPASDIRNVKEMIAPKLGLK 641 (816)
Q Consensus 604 ~M~V~Vk~~~g~t~~v~V-----~~~~TV~~LK~~I~~~~Gip 641 (816)
. .|- .+|. +.+++ .|..||..+-..|.....-|
T Consensus 79 P---nv~-~~G~-iCl~iL~~~W~p~~~i~~vl~~i~~ll~~p 116 (152)
T 2aak_A 79 P---NIY-ADGS-ICLDILQNQWSPIYDVAAILTSIQSLLCDP 116 (152)
T ss_dssp T---TBC-TTSB-BCCGGGTTSCCTTCCHHHHHHHHHHHHTSC
T ss_pred C---CCC-CCCE-EechhhcCCCCCCCcHHHHHHHHHHHHhCC
Confidence 0 121 2343 44443 35678888888887766543
No 117
>1zdn_A Ubiquitin-conjugating enzyme E2S; structural genomics consortium, ubiquitin-conjuga enzyme, ligase, SGC; 1.93A {Homo sapiens} SCOP: d.20.1.1
Probab=99.18 E-value=9.9e-12 Score=121.55 Aligned_cols=107 Identities=21% Similarity=0.141 Sum_probs=79.3
Q ss_pred hhhhHHHHHHHhhhcCCCCCcceeccccCCCCcccceEEEEeCCCCCCCCCcchhhhhchhhhhhhhhhhheeccCCCCC
Q psy15035 524 PRNFRLLEELEHGQRGVGDGTISWGLENDDDMTLTHWTGMIIGPPRTSTTGHIMDTIIGYIMSVLNEILHLFWISRKPDN 603 (816)
Q Consensus 524 p~~~~l~~el~~~~~~~~~~~~s~gl~~~~d~~l~~w~~~i~GP~~t~~e~~~~~l~i~f~~~yp~~~p~~~~~~~~~~~ 603 (816)
.+..||++||+++++++++| ++++. ++.++++|.++|.||++||||||+|.+.|.||++||.+||+|. |...+-.
T Consensus 13 ~~~~RL~kEl~~l~~~~~~g-i~~~~---~~~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~-f~t~i~H 87 (158)
T 1zdn_A 13 HIIRLVYKEVTTLTADPPDG-IKVFP---NEEDLTDLQVTIEGPEGTPYAGGLFRMKLLLGKDFPASPPKGY-FLTKIFH 87 (158)
T ss_dssp HHHHHHHHHHHHHHHSCCTT-EEEEE---CSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEE-ESSCCCC
T ss_pred HHHHHHHHHHHHHHhCCCCC-EEEEE---CCCChhheeEEEECCCCCCccCcEEEEEEEcCCCCCCCCCEEE-eccCccc
Confidence 35689999999999996655 88864 2335679999999999999999999999999999999999995 7665110
Q ss_pred ceEEEEEecCCceEEEEc-----CCCCcHHHHHHHHhhhhCC
Q psy15035 604 TLMINIKSNTGNTVCVNL-----DPASDIRNVKEMIAPKLGL 640 (816)
Q Consensus 604 ~M~V~Vk~~~g~t~~v~V-----~~~~TV~~LK~~I~~~~Gi 640 (816)
. .| ..+|+ +.+++ .|..||..+-..|.....-
T Consensus 88 P---nv-~~~G~-iCl~iL~~~W~p~~~i~~vL~~i~~ll~~ 124 (158)
T 1zdn_A 88 P---NV-GANGE-ICVNVLKRDWTAELGIRHVLLTIKCLLIH 124 (158)
T ss_dssp T---TB-CTTSB-BCHHHHTTTCCTTCCHHHHHHHHHHHHHS
T ss_pred C---CC-CCCCE-EehhhcCCCCCCCCcHHHHHHHHHHHHhC
Confidence 0 12 11343 34432 3667888887777766543
No 118
>2pwq_A Ubiquitin conjugating enzyme; structural genomics consortium, SGC, ligase; 1.90A {Plasmodium yoelii}
Probab=99.17 E-value=1.1e-11 Score=126.87 Aligned_cols=110 Identities=24% Similarity=0.261 Sum_probs=82.4
Q ss_pred chhhhHHHHHHHhhhcCCCCCcceeccccCCCCcccceEEEEeCCCCCCCCCcchhhhhchhhhhhhhhhhheeccCCCC
Q psy15035 523 VPRNFRLLEELEHGQRGVGDGTISWGLENDDDMTLTHWTGMIIGPPRTSTTGHIMDTIIGYIMSVLNEILHLFWISRKPD 602 (816)
Q Consensus 523 vp~~~~l~~el~~~~~~~~~~~~s~gl~~~~d~~l~~w~~~i~GP~~t~~e~~~~~l~i~f~~~yp~~~p~~~~~~~~~~ 602 (816)
-++..||++||++++++++.| ++++..+ .++++|.++|.||++||||||+|.+.|.||++||++||+|. |...+-
T Consensus 22 s~a~~RL~kEl~~l~~~~~~g-i~~~p~~---~nl~~W~~~I~GP~~TpYegG~f~l~i~fP~~YP~~PP~V~-F~T~i~ 96 (216)
T 2pwq_A 22 SKELLRLQKELKDIENENVQE-IDAHIKD---SNFFEWVGFIKGPEGTPYEGGHFTLAITIPNDYPYNPPKIK-FVTKIW 96 (216)
T ss_dssp CHHHHHHHHHHHHHHHSCTTT-EEEEECS---SCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEE-ESSCCC
T ss_pred CHHHHHHHHHHHHHHhCCCCC-EEEEEcC---CccceeEEEEeCCCCCCccceEEEEEEECCCcCCCCCCccc-ccCCCc
Confidence 356889999999999997655 8887542 25779999999999999999999999999999999999995 766510
Q ss_pred CceEEEEEecCCceEEEEc-----CCCCcHHHHHHHHhhhhCCC
Q psy15035 603 NTLMINIKSNTGNTVCVNL-----DPASDIRNVKEMIAPKLGLK 641 (816)
Q Consensus 603 ~~M~V~Vk~~~g~t~~v~V-----~~~~TV~~LK~~I~~~~Gip 641 (816)
.=.|...+|. +++++ .|..||..+-..|+....-|
T Consensus 97 ---HPNI~~~~G~-ICL~iL~~~WsP~~ti~~VL~sI~sLL~~P 136 (216)
T 2pwq_A 97 ---HPNISSQTGA-ICLDVLKNEWSPALTIRTALLSIQALLSDP 136 (216)
T ss_dssp ---BTTBCTTTCB-BCCHHHHHHCCTTCCHHHHHHHHHHHHHSC
T ss_pred ---CCCCcCCCCE-EEchhhcccCCCCCcHHHHHHHHHHHHhCC
Confidence 0012222343 44542 47788888888777776543
No 119
>3rz3_A Ubiquitin-conjugating enzyme E2 R1; ubiquitin conjugating enzyme domain, E2 domain, ligase-ligas inhibitor complex; HET: U94; 2.30A {Homo sapiens} PDB: 2ob4_A
Probab=99.17 E-value=1.4e-11 Score=123.24 Aligned_cols=106 Identities=24% Similarity=0.349 Sum_probs=80.4
Q ss_pred hhhhHHHHHHHhhhcCCCCCcceeccccCCCCcccceEEEEeCCCCCCCCCcchhhhhchhhhhhhhhhhheeccCCC--
Q psy15035 524 PRNFRLLEELEHGQRGVGDGTISWGLENDDDMTLTHWTGMIIGPPRTSTTGHIMDTIIGYIMSVLNEILHLFWISRKP-- 601 (816)
Q Consensus 524 p~~~~l~~el~~~~~~~~~~~~s~gl~~~~d~~l~~w~~~i~GP~~t~~e~~~~~l~i~f~~~yp~~~p~~~~~~~~~-- 601 (816)
.+..||++||++++++++.| +++++.+++ +|++|.++|.||++|+|+||+|.+.|.||++||.+||+|. |.+.+
T Consensus 7 ~a~kRL~kEl~~l~~~~~~g-i~~~~~~~~--nl~~W~~~I~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~-f~t~i~H 82 (183)
T 3rz3_A 7 SSQKALLLELKGLQEEPVEG-FRVTLVDEG--DLYNWEVAIFGPPNTYYEGGYFKARLKFPIDYPYSPPAFR-FLTKMWH 82 (183)
T ss_dssp HHHHHHHHHHHHHHHSCCTT-EEEEECTTC--CTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEE-ESSCCCC
T ss_pred HHHHHHHHHHHHHHhCCCCC-EEEEecCcc--chhheeeeeeCCCCCCCCCCeEEEEEECCCCCCCCCCeeE-ecCCCcc
Confidence 45789999999999997766 888754444 5669999999999999999999999999999999999985 76651
Q ss_pred CCceEEEEEecCCceEEEE------------------cCCCCcHHHHHHHHhhhhCC
Q psy15035 602 DNTLMINIKSNTGNTVCVN------------------LDPASDIRNVKEMIAPKLGL 640 (816)
Q Consensus 602 ~~~M~V~Vk~~~g~t~~v~------------------V~~~~TV~~LK~~I~~~~Gi 640 (816)
++ | ..+|+ ++++ =.|..||..+-..|.....-
T Consensus 83 Pn-----V-~~~G~-iClsiL~~~~~~~~~~~~~~~~W~p~~~i~~vL~si~~ll~~ 132 (183)
T 3rz3_A 83 PN-----I-YETGD-VCISILHPPVDDPQSGELPSERWNPTQNVRTILLSVISLLNE 132 (183)
T ss_dssp TT-----B-CTTSB-BCCTTC--------------CCCCTTCCHHHHHHHHHHHHHS
T ss_pred CC-----C-CCCCc-EehhhcCcccccccccccccCCCCCcCcHHHHHHHHHHHHhC
Confidence 21 2 12333 2222 23567888888877766643
No 120
>2r0j_A Ubiquitin carrier protein; ubiquitin conjugating, malaria, ligas conjugation pathway, structural genomics, structural genomi consortium; 1.85A {Plasmodium falciparum} PDB: 3e95_A
Probab=99.17 E-value=9.4e-12 Score=120.56 Aligned_cols=105 Identities=22% Similarity=0.187 Sum_probs=78.4
Q ss_pred hhHHHHHHHhhhcCCCCCcceeccccCCCCcccceEEEEeCCCCCCCCCcchhhhhchhhhhhhhhhhheeccCCCCCce
Q psy15035 526 NFRLLEELEHGQRGVGDGTISWGLENDDDMTLTHWTGMIIGPPRTSTTGHIMDTIIGYIMSVLNEILHLFWISRKPDNTL 605 (816)
Q Consensus 526 ~~~l~~el~~~~~~~~~~~~s~gl~~~~d~~l~~w~~~i~GP~~t~~e~~~~~l~i~f~~~yp~~~p~~~~~~~~~~~~M 605 (816)
..||++||++++++++.+ ++++.. +.++++|.++|.||++|+||||+|.+.|.||++||.+||+|. |...+-..
T Consensus 3 ~~RL~kEl~~l~~~~~~~-i~~~~~---~~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~-f~t~i~HP- 76 (149)
T 2r0j_A 3 PRRITKETQNLANEPPPG-IMAVPV---PENYRHFNILINGPDGTPYEGGTYKLELFLPEQYPMEPPKVR-FLTKIYHP- 76 (149)
T ss_dssp CHHHHHHHHHHHHSCCTT-EEEEEE---TTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEE-ECSCCCBT-
T ss_pred HHHHHHHHHHHHhCCCCC-EEEEEC---CCcccEEEEEEECCCCCCcCCCEEEEEEeCCcccCCCCCeeE-eccCCccC-
Confidence 369999999999986555 888753 235779999999999999999999999999999999999995 76651000
Q ss_pred EEEEEecCCceEEEEc-----CCCCcHHHHHHHHhhhhCC
Q psy15035 606 MINIKSNTGNTVCVNL-----DPASDIRNVKEMIAPKLGL 640 (816)
Q Consensus 606 ~V~Vk~~~g~t~~v~V-----~~~~TV~~LK~~I~~~~Gi 640 (816)
.|- .+|+ +.+++ .|..||..+-..|.....-
T Consensus 77 --nv~-~~G~-iCl~iL~~~W~p~~~i~~vl~~i~~ll~~ 112 (149)
T 2r0j_A 77 --NID-KLGR-ICLDILKDKWSPALQIRTVLLSIQALLSS 112 (149)
T ss_dssp --TBC-TTCB-BCCGGGTTTCCTTSCHHHHHHHHHHHHHS
T ss_pred --CCC-CCCE-EechhcCCCCCCCCcHHHHHHHHHHHHhC
Confidence 121 2343 34443 3677888888877776543
No 121
>2grr_A Ubiquitin-conjugating enzyme E2 I; ubiquitin, conjugation, small ubiquitin like modifer, SMT3, ligase; 1.30A {Homo sapiens} PDB: 2grq_A 2grn_A 2pe6_A 2gro_A 2grp_A 1u9a_A 1u9b_A 2vrr_A 2px9_B 1z5s_A 2xwu_A 3uin_A 3uio_A 3uip_A* 1kps_A 2o25_C 1a3s_A 3a4s_A 2uyz_A
Probab=99.17 E-value=1.2e-11 Score=121.38 Aligned_cols=109 Identities=19% Similarity=0.183 Sum_probs=81.1
Q ss_pred hhhHHHHHHHhhhcCCCCCcceecccc--CCCCcccceEEEEeCCCCCCCCCcchhhhhchhhhhhhhhhhheeccCCCC
Q psy15035 525 RNFRLLEELEHGQRGVGDGTISWGLEN--DDDMTLTHWTGMIIGPPRTSTTGHIMDTIIGYIMSVLNEILHLFWISRKPD 602 (816)
Q Consensus 525 ~~~~l~~el~~~~~~~~~~~~s~gl~~--~~d~~l~~w~~~i~GP~~t~~e~~~~~l~i~f~~~yp~~~p~~~~~~~~~~ 602 (816)
+..||++||++++++++.| ++++... +++.++++|.++|.||++|+|+||+|.+.|.||++||.+||.+. |...+-
T Consensus 8 a~~RL~kE~~~l~~~~~~g-~~~~p~~~~~~~~nl~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~-f~t~i~ 85 (161)
T 2grr_A 8 ALSRLAQERKAWRKDHPFG-FVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCK-FEPPLF 85 (161)
T ss_dssp HHHHHHHHHHHHHHSCCTT-CEEEEEECTTSCEEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEE-ESSCCC
T ss_pred HHHHHHHHHHHHHhCCCCC-EEEEeccccCCCCCccEEEEEEECCCCCCccCCEEEEEEEcCcccCCCCCEEE-EecCcc
Confidence 5689999999999997766 6766543 23467889999999999999999999999999999999999995 766411
Q ss_pred CceEEEEEecCCceEEEEc-------CCCCcHHHHHHHHhhhhCC
Q psy15035 603 NTLMINIKSNTGNTVCVNL-------DPASDIRNVKEMIAPKLGL 640 (816)
Q Consensus 603 ~~M~V~Vk~~~g~t~~v~V-------~~~~TV~~LK~~I~~~~Gi 640 (816)
.. .|- .+|. +.+++ .|..||.++-..|.....-
T Consensus 86 HP---nv~-~~G~-iCl~iL~~~~~W~p~~~i~~vl~~i~~ll~~ 125 (161)
T 2grr_A 86 HP---NVY-PSGT-VCLSILEEDKDWRPAITIKQILLGIQELLNE 125 (161)
T ss_dssp ST---TBC-TTSB-BCCGGGCTTTTCCTTCCHHHHHHHHHHHHHS
T ss_pred cC---CCC-CCCe-EeehhcCCCCCcCCCCcHHHHHHHHHHHHhC
Confidence 00 121 2343 34443 2556888888777776543
No 122
>4gpr_A Ubiquitin-conjugating enzyme family protein; ubiquitin conjugation, EHU ehring1, thiol esterification, ligase; 1.60A {Entamoeba histolytica}
Probab=99.17 E-value=1.2e-11 Score=120.08 Aligned_cols=106 Identities=22% Similarity=0.266 Sum_probs=79.8
Q ss_pred hhhHHHHHHHhhhcCCCCCcceeccccCCCCcccceEEEEeCCCCCCCCCcchhhhhchhhhhhhhhhhheeccCCCCCc
Q psy15035 525 RNFRLLEELEHGQRGVGDGTISWGLENDDDMTLTHWTGMIIGPPRTSTTGHIMDTIIGYIMSVLNEILHLFWISRKPDNT 604 (816)
Q Consensus 525 ~~~~l~~el~~~~~~~~~~~~s~gl~~~~d~~l~~w~~~i~GP~~t~~e~~~~~l~i~f~~~yp~~~p~~~~~~~~~~~~ 604 (816)
+..||++||++++++++++ ++++..+ .++++|.++|.||++|+|+||+|.+.|.||++||.+||++. |...+-..
T Consensus 5 a~~RL~kEl~~l~~~~~~~-i~~~p~~---~nl~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~-f~t~i~HP 79 (151)
T 4gpr_A 5 AMRRIQKELREIQQDPPCN-CSAGPVG---DDIFHWTATITGPDDSPYQGGLFFLDVHFPVDYPFKAPRVT-FMTKVYHP 79 (151)
T ss_dssp HHHHHHHHHHHHHHSCCTT-EEEEESS---SCTTEEEEEEECCSSSTTTTCEEEEEEECCTTTTSSCCEEE-ESSCCCBT
T ss_pred HHHHHHHHHHHHHhCCCCC-EEEEEcC---CCceEEEEEEeCCCCCCcCCCEEEEEEECCCCCCCCcceeE-EecCcccc
Confidence 4689999999999997666 8887542 25679999999999999999999999999999999999994 76651100
Q ss_pred eEEEEEecCCceEEEEc-----CCCCcHHHHHHHHhhhhCC
Q psy15035 605 LMINIKSNTGNTVCVNL-----DPASDIRNVKEMIAPKLGL 640 (816)
Q Consensus 605 M~V~Vk~~~g~t~~v~V-----~~~~TV~~LK~~I~~~~Gi 640 (816)
.|- .+|+ +.+++ .+..||..+-..|.....-
T Consensus 80 ---nv~-~~G~-iCl~iL~~~W~p~~~i~~vl~~i~~ll~~ 115 (151)
T 4gpr_A 80 ---NIN-KNGV-ICLDILKDQWSPALTLSRVLLSISSLLTD 115 (151)
T ss_dssp ---TBC-TTCB-BCCGGGTTTCCTTCCHHHHHHHHHHHHHC
T ss_pred ---eEC-CCCE-EEcccccCCCCCCCcHHHHHHHHHHHhcC
Confidence 121 2343 44543 3667888888877766543
No 123
>1z2u_A Ubiquitin-conjugating enzyme E2 2; PSI, secsg, proteosome pathway, structural genomics, protein structure initiative; 1.10A {Caenorhabditis elegans} SCOP: d.20.1.1 PDB: 3tgd_A 2esk_A 1ur6_A 1w4u_A 4a49_B* 4a4b_C* 4a4c_C* 3eb6_B 3l1y_A 2esp_A 2eso_A 2esq_A 3l1z_A 2oxq_A 3a33_A 4ddg_D 4ddi_D 1x23_A 3rpg_A 2fuh_A ...
Probab=99.16 E-value=9.9e-12 Score=120.55 Aligned_cols=106 Identities=24% Similarity=0.326 Sum_probs=79.7
Q ss_pred hhhhHHHHHHHhhhcCCCCCcceeccccCCCCcccceEEEEeCCCCCCCCCcchhhhhchhhhhhhhhhhheeccCCCCC
Q psy15035 524 PRNFRLLEELEHGQRGVGDGTISWGLENDDDMTLTHWTGMIIGPPRTSTTGHIMDTIIGYIMSVLNEILHLFWISRKPDN 603 (816)
Q Consensus 524 p~~~~l~~el~~~~~~~~~~~~s~gl~~~~d~~l~~w~~~i~GP~~t~~e~~~~~l~i~f~~~yp~~~p~~~~~~~~~~~ 603 (816)
.+..||++||++++++++.+ ++++..+ .++++|.++|.||++|+|+||+|.+.|.||++||.+||.|. |...+-.
T Consensus 4 ~~~~RL~kEl~~l~~~~~~~-~~~~~~~---~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~-f~t~i~H 78 (150)
T 1z2u_A 4 MALKRIQKELQDLGRDPPAQ-CSAGPVG---DDLFHWQATIMGPPESPYQGGVFFLTIHFPTDYPFKPPKVA-FTTRIYH 78 (150)
T ss_dssp HHHHHHHHHHHHHHHSCCSS-EEEEEET---TEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEE-ESSCCCB
T ss_pred HHHHHHHHHHHHHHhCCCCC-EEEEECC---CcceEEEEEEECCCCCCcCCCEEEEEEECCCCCCCCCcEEE-EecCccc
Confidence 35689999999999986655 8887532 35779999999999999999999999999999999999995 7654100
Q ss_pred ceEEEEEecCCceEEEEc-----CCCCcHHHHHHHHhhhhC
Q psy15035 604 TLMINIKSNTGNTVCVNL-----DPASDIRNVKEMIAPKLG 639 (816)
Q Consensus 604 ~M~V~Vk~~~g~t~~v~V-----~~~~TV~~LK~~I~~~~G 639 (816)
. .| ..+|+ +.+++ .|..||.++-..|.....
T Consensus 79 P---nv-~~~G~-iCl~iL~~~W~p~~~i~~vl~~i~~ll~ 114 (150)
T 1z2u_A 79 P---NI-NSNGS-ICLDILRSQWSPALTISKVLLSICSLLC 114 (150)
T ss_dssp T---TB-CTTCB-BCCGGGTTTCCTTCCHHHHHHHHHHHHH
T ss_pred C---cC-CCCCe-EeeccccCCCCCCCCHHHHHHHHHHHhh
Confidence 0 12 12343 44443 356788888888777654
No 124
>2f4w_A Ubiquitin-conjugating enzyme E2, J2; endoplasmic reticulum, ligase, UBL conjugation pathway, structural genomics consortium (SGC); 2.00A {Homo sapiens} SCOP: d.20.1.1
Probab=99.16 E-value=9.5e-12 Score=124.83 Aligned_cols=107 Identities=13% Similarity=0.142 Sum_probs=78.7
Q ss_pred chhhhHHHHHHHhhhcCCCCCcceeccccCCCCcccceEEEEeCCCCCCCCCcchhhhhchhhhhhhhhhhheeccCCCC
Q psy15035 523 VPRNFRLLEELEHGQRGVGDGTISWGLENDDDMTLTHWTGMIIGPPRTSTTGHIMDTIIGYIMSVLNEILHLFWISRKPD 602 (816)
Q Consensus 523 vp~~~~l~~el~~~~~~~~~~~~s~gl~~~~d~~l~~w~~~i~GP~~t~~e~~~~~l~i~f~~~yp~~~p~~~~~~~~~~ 602 (816)
-++.+||++||++++++++.+ ++++.. +.++++|.++|.||++||||||+|.+.|.||++||++||.|. |...
T Consensus 13 ~~a~~RL~kEl~~l~~~~~~~-i~~~p~---~~nl~~W~~~I~GP~~TpYegG~f~l~i~fP~~YP~~PP~v~-f~T~-- 85 (187)
T 2f4w_A 13 TTATQRLKQDYLRIKKDPVPY-ICAEPL---PSNILEWHYVVRGPEMTPYEGGYYHGKLIFPREFPFKPPSIY-MITP-- 85 (187)
T ss_dssp -CHHHHHHHHHHHHHHSCCTT-EEEEEE---TTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEE-ECSC--
T ss_pred cHHHHHHHHHHHHHHhCCCCC-EEEEEc---CCccceeEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCccc-ccCC--
Confidence 467899999999999996655 787643 336779999999999999999999999999999999999994 6553
Q ss_pred CceEEEEEecCCceEEEEc--------CCCCcHHHHHHHHhhhhCCC
Q psy15035 603 NTLMINIKSNTGNTVCVNL--------DPASDIRNVKEMIAPKLGLK 641 (816)
Q Consensus 603 ~~M~V~Vk~~~g~t~~v~V--------~~~~TV~~LK~~I~~~~Gip 641 (816)
+ ..+. .+|+ +++++ .|..||..+-..|.....-|
T Consensus 86 ~---~~~~-~~G~-ICL~iL~~~~~~W~P~~ti~~vL~si~sll~~p 127 (187)
T 2f4w_A 86 N---GRFK-CNTR-LCLSITDFHPDTWNPAWSVSTILTGLLSFMVEK 127 (187)
T ss_dssp C---SSBC-TTSC-BC----------CCTTCCHHHHHHHHHHHHHSC
T ss_pred C---ceec-cCCe-EeeeccccCccCCCCcCcHHHHHHHHHHHhcCC
Confidence 0 0111 1333 23332 36678888887777766433
No 125
>1i7k_A Ubiquitin-conjugating enzyme E2 H10; ligase; 1.95A {Homo sapiens} SCOP: d.20.1.1
Probab=99.16 E-value=1.1e-11 Score=123.27 Aligned_cols=108 Identities=21% Similarity=0.202 Sum_probs=80.0
Q ss_pred cchhhhHHHHHHHhhhcCCCCCcceeccccCCCCcccceEEEEeCCCCCCCCCcchhhhhchhhhhhhhhhhheeccCCC
Q psy15035 522 IVPRNFRLLEELEHGQRGVGDGTISWGLENDDDMTLTHWTGMIIGPPRTSTTGHIMDTIIGYIMSVLNEILHLFWISRKP 601 (816)
Q Consensus 522 ~vp~~~~l~~el~~~~~~~~~~~~s~gl~~~~d~~l~~w~~~i~GP~~t~~e~~~~~l~i~f~~~yp~~~p~~~~~~~~~ 601 (816)
...+.+||++||++++++++.| ++++.. + .++++|.++|.||++|+||||+|.+.|.||++||++||.|. |...+
T Consensus 28 ~~~~~~RL~kEl~~l~~~~~~g-i~~~p~--~-~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~V~-F~T~i 102 (179)
T 1i7k_A 28 RGPVGKRLQQELMTLMMSGDKG-ISAFPE--S-DNLFKWVGTIHGAAGTVYEDLRYKLSLEFPSGYPYNAPTVK-FLTPC 102 (179)
T ss_dssp --CHHHHHHHHHHHHHHHCCTT-EEEEEE--T-TEEEEEEEEEEBCTTSTTBTCEEEEEEECCTTTTTSCCEEE-ESSCC
T ss_pred ChHHHHHHHHHHHHHHhCCCCC-EEEEEc--C-CcccccEEEEECCCCCCcCCCEEEEEEECCCcCCCCCceEE-EecCC
Confidence 4567899999999999985555 787642 3 36789999999999999999999999999999999999995 76651
Q ss_pred CCceEEEEEecCCceEEEEc-----CCCCcHHHHHHHHhhhhC
Q psy15035 602 DNTLMINIKSNTGNTVCVNL-----DPASDIRNVKEMIAPKLG 639 (816)
Q Consensus 602 ~~~M~V~Vk~~~g~t~~v~V-----~~~~TV~~LK~~I~~~~G 639 (816)
-.. .|- .+|. +++++ .+..||..+-..|.....
T Consensus 103 ~HP---NV~-~~G~-ICL~iL~~~WsP~~ti~~vL~sI~sll~ 140 (179)
T 1i7k_A 103 YHP---NVD-TQGN-ISLDILKEKWSALYDVRTILLSIQSLLG 140 (179)
T ss_dssp CST---TBC-TTCB-BCCGGGTTTCCTTCCHHHHHHHHHHHHH
T ss_pred ccC---ccc-cCCe-EEcccCcCcCCCCCCHHHHHHHHHHHHh
Confidence 000 121 2343 34543 356788888877776654
No 126
>3fn1_B NEDD8-conjugating enzyme UBE2F; ligase, ATP-binding, cell cycle, nucleotide-binding, UBL CON pathway; 2.50A {Homo sapiens} PDB: 2edi_A
Probab=99.15 E-value=2e-11 Score=120.44 Aligned_cols=110 Identities=14% Similarity=0.097 Sum_probs=83.3
Q ss_pred cchhhhHHHHHHHhhhcCCCCCcceeccccCCCCcccceEEEEeCCCCCCCCCcchhhhhchhhhhhhhhhhheeccCCC
Q psy15035 522 IVPRNFRLLEELEHGQRGVGDGTISWGLENDDDMTLTHWTGMIIGPPRTSTTGHIMDTIIGYIMSVLNEILHLFWISRKP 601 (816)
Q Consensus 522 ~vp~~~~l~~el~~~~~~~~~~~~s~gl~~~~d~~l~~w~~~i~GP~~t~~e~~~~~l~i~f~~~yp~~~p~~~~~~~~~ 601 (816)
..+|.+||++||+++++++++| +++++.+++ ++..|.++| ||++|||+||+|.+.|.||++||.+||+|. |...+
T Consensus 12 ~s~~~~RL~kEl~~l~~~~~~g-i~~~~~~~~--~l~~w~~~i-gp~~tpyegg~f~~~i~fp~~YP~~pP~v~-f~t~i 86 (167)
T 3fn1_B 12 VSVRDKLLVKEVAELEANLPCT-CKVHFPDPN--KLHCFQLTV-TPDEGYYQGGKFQFETEVPDAYNMVPPKVK-CLTKI 86 (167)
T ss_dssp CCHHHHHHHHHHHHHGGGSCTT-EEEECSSSS--CTTEEEEEE-CCSSSTTTTCCEEEEEECCTTBTTBCCEEE-ECSCC
T ss_pred hhHHHHHHHHHHHHHHhCCCCC-EEEEeCCCC--cceeEEEEE-CCCCCccCCCEEEEEEECCCCCCCCCCeeE-ecCCc
Confidence 4799999999999999997766 888765444 466999988 999999999999999999999999999985 76641
Q ss_pred CCceEEEEEecCCceEEEEc-----------CCCCcHHHHHHHHhhhhCCC
Q psy15035 602 DNTLMINIKSNTGNTVCVNL-----------DPASDIRNVKEMIAPKLGLK 641 (816)
Q Consensus 602 ~~~M~V~Vk~~~g~t~~v~V-----------~~~~TV~~LK~~I~~~~Gip 641 (816)
-.. .|- .+|+ +++++ .+..||..+-..|.....-|
T Consensus 87 ~HP---nv~-~~G~-iCl~iL~~~~~~~~~W~p~~~i~~vl~~i~~ll~~~ 132 (167)
T 3fn1_B 87 WHP---NIT-ETGE-ICLSLLREHSIDGTGWAPTRTLKDVVWGLNSLFTDL 132 (167)
T ss_dssp CCS---SBC-TTCC-BCCGGGSBCSSSTTSBCTTCCHHHHHHHHHHTTTTT
T ss_pred ccC---CCC-CCCE-EechhhccCCCCCCCCCCcCcHHHHHHHHHHHHcCC
Confidence 100 121 2344 44443 35668999888888776553
No 127
>3bzh_A Ubiquitin-conjugating enzyme E2 E1; structural genomics consortium, ubiquitin-conjuga enzyme, ligase, SGC, UBL conjugation pathway; 1.60A {Homo sapiens} PDB: 1y6l_A
Probab=99.14 E-value=2e-11 Score=123.05 Aligned_cols=108 Identities=20% Similarity=0.256 Sum_probs=80.7
Q ss_pred chhhhHHHHHHHhhhcCCCCCcceeccccCCCCcccceEEEEeCCCCCCCCCcchhhhhchhhhhhhhhhhheeccCCCC
Q psy15035 523 VPRNFRLLEELEHGQRGVGDGTISWGLENDDDMTLTHWTGMIIGPPRTSTTGHIMDTIIGYIMSVLNEILHLFWISRKPD 602 (816)
Q Consensus 523 vp~~~~l~~el~~~~~~~~~~~~s~gl~~~~d~~l~~w~~~i~GP~~t~~e~~~~~l~i~f~~~yp~~~p~~~~~~~~~~ 602 (816)
-.+..||++||++++++++.+ ++++.. +.++++|.++|+||++|+|+||+|.+.|.||++||++||.|. |...+-
T Consensus 47 s~a~~RL~kEl~~l~~~~~~g-i~~~p~---~~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~V~-F~T~i~ 121 (194)
T 3bzh_A 47 STSAKRIQKELADITLDPPPN-CSAGPK---GDNIYEWRSTILGPPGSVYEGGVFFLDITFTPEYPFKPPKVT-FRTRIY 121 (194)
T ss_dssp HHHHHHHHHHHHHHHHSCCTT-EEEEES---SSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEE-ESSCCC
T ss_pred cHHHHHHHHHHHHHHhCCCCC-ceeecc---cCccccceEEEeCCCCCCccCCEEEEEEECCCcCCCCCcccc-ccCCCc
Confidence 346789999999999986555 888753 235679999999999999999999999999999999999995 766510
Q ss_pred CceEEEEEecCCceEEEEc-----CCCCcHHHHHHHHhhhhCC
Q psy15035 603 NTLMINIKSNTGNTVCVNL-----DPASDIRNVKEMIAPKLGL 640 (816)
Q Consensus 603 ~~M~V~Vk~~~g~t~~v~V-----~~~~TV~~LK~~I~~~~Gi 640 (816)
. -.|- .+|. +++++ .|..||..+-..|.....-
T Consensus 122 H---PNV~-~~G~-ICL~iL~~~WsP~~ti~~vL~sI~~ll~~ 159 (194)
T 3bzh_A 122 H---CNIN-SQGV-ICLDILKDNWSPALTISKVLLSICSLLTD 159 (194)
T ss_dssp B---TTBC-TTCB-BCCGGGTTTCCTTCCHHHHHHHHHHHHHS
T ss_pred c---ceEC-CCCc-eechhhhccCCCcCcHHHHHHHHHHHHhC
Confidence 0 0121 2343 45553 3566888888777776543
No 128
>1tte_A Ubiquitin-conjugating enzyme E2-24 kDa; UBC1, ubiquitin-dependent degradation, ligase; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1 d.20.1.1
Probab=99.13 E-value=6.7e-12 Score=128.34 Aligned_cols=110 Identities=20% Similarity=0.304 Sum_probs=82.6
Q ss_pred hhhhHHHHHHHhhhcCCCCCcceeccccCCCCcccceEEEEeCCCCCCCCCcchhhhhchhhhhhhhhhhheeccCCCCC
Q psy15035 524 PRNFRLLEELEHGQRGVGDGTISWGLENDDDMTLTHWTGMIIGPPRTSTTGHIMDTIIGYIMSVLNEILHLFWISRKPDN 603 (816)
Q Consensus 524 p~~~~l~~el~~~~~~~~~~~~s~gl~~~~d~~l~~w~~~i~GP~~t~~e~~~~~l~i~f~~~yp~~~p~~~~~~~~~~~ 603 (816)
+|.+||++||++++++++.| ++++..+++ .+++|.++|.||++|||+||+|.+.|.||++||.+||+|. |...+-.
T Consensus 2 ~a~~RL~kEl~~l~~~~~~g-i~~~p~~~~--~l~~w~~~I~GP~~TpYegG~f~l~i~fP~~YP~~PP~V~-F~T~i~H 77 (215)
T 1tte_A 2 SRAKRIMKEIQAVKDDPAAH-ITLEFVSES--DIHHLKGTFLGPPGTPYEGGKFVVDIEVPMEYPFKPPKMQ-FDTKVYH 77 (215)
T ss_dssp TTHHHHHHHHHHHHTTTCTT-CEECCCSSS--SCCEEEEECCEEEEETTEEECCEEEEECCSCSSSCCCEEE-ETTTCCC
T ss_pred hHHHHHHHHHHHHHhCCCCC-EEEEECCCc--cccccEEEEeCCCCCCcCCCEEEEEEeCCccCCCCCCccc-ccCCCcc
Confidence 46799999999999996655 888765433 4569999999999999999999999999999999999994 7665100
Q ss_pred ceEEEEEecCCceEEEEc-----CCCCcHHHHHHHHhhhhCCC
Q psy15035 604 TLMINIKSNTGNTVCVNL-----DPASDIRNVKEMIAPKLGLK 641 (816)
Q Consensus 604 ~M~V~Vk~~~g~t~~v~V-----~~~~TV~~LK~~I~~~~Gip 641 (816)
-.|-..+|. +++++ .|..||..+-..|.....-|
T Consensus 78 ---PNI~~~~G~-ICL~iL~~~WsP~~ti~~VL~sI~sLL~~P 116 (215)
T 1tte_A 78 ---PNISSVTGA-ICLDILRNAWSPVITLKSALISLQALLQSP 116 (215)
T ss_dssp ---SSSCSSSSC-CCSSTTTCCSCTTCCHHHHHHHHHHHHTSC
T ss_pred ---CcCcCCCCE-EECccCCCCCCCcCcHHHHHHHHHHHHhCC
Confidence 011111343 34443 46778998888888777654
No 129
>2io0_B Small ubiquitin-related modifier 2 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.30A {Homo sapiens} SCOP: d.15.1.1
Probab=99.13 E-value=1.4e-10 Score=102.63 Aligned_cols=78 Identities=9% Similarity=0.336 Sum_probs=74.0
Q ss_pred CCceEEEEEecCCceEEEEcCCCCcHHHHHHHHhhhhCCCCCCeEEEECCeecCCCccccccCCCCCCEEEEe-eCCCC
Q psy15035 602 DNTLMINIKSNTGNTVCVNLDPASDIRNVKEMIAPKLGLKYEEVKIIFAGKELEDTTIISECDLGQQSILHAV-KSSPE 679 (816)
Q Consensus 602 ~~~M~V~Vk~~~g~t~~v~V~~~~TV~~LK~~I~~~~Gip~~~qrLif~Gk~L~d~~tL~~~~I~~~stl~lv-r~~gg 679 (816)
+..|+|+|++.+|+.+.+.|.+++++..|++..+++.|+|+.++|++|+|+.|.++.|.++|++++|++|+++ +..||
T Consensus 3 ~~~i~ikVk~~~g~~v~~~vk~~t~l~kl~~~y~~~~gi~~~~~rf~FdG~~l~~~~Tp~dl~medgD~Idv~~~q~gg 81 (91)
T 2io0_B 3 NDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQTGG 81 (91)
T ss_dssp -CEEEEEEECTTSCEEEEEEETTSCTHHHHHHHHHHTTCCSTTEEEEETTEECCTTCCTTTTTCCTTEEEEEEECCCCC
T ss_pred CCeEEEEEECCCCCEEEEEECCCChHHHHHHHHHHHhCCCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEEEeccCC
Confidence 3468999999999999999999999999999999999999999999999999999999999999999999999 77777
No 130
>1yrv_A Ubiquitin-conjugating ligase MGC351130; structural genomics consortium, SGC, ubiquitin- conjugating enzyme; 2.18A {Homo sapiens} SCOP: d.20.1.1
Probab=99.13 E-value=2e-11 Score=120.56 Aligned_cols=109 Identities=13% Similarity=0.133 Sum_probs=80.4
Q ss_pred hhhhHHHHHHHhhhcCCCCCcceeccccCCCCcccceEEEEeCCCCCCCCCcchhhhhchhhhhhhhhhhheeccCCCCC
Q psy15035 524 PRNFRLLEELEHGQRGVGDGTISWGLENDDDMTLTHWTGMIIGPPRTSTTGHIMDTIIGYIMSVLNEILHLFWISRKPDN 603 (816)
Q Consensus 524 p~~~~l~~el~~~~~~~~~~~~s~gl~~~~d~~l~~w~~~i~GP~~t~~e~~~~~l~i~f~~~yp~~~p~~~~~~~~~~~ 603 (816)
++..||++||++++++++.| ++++.. +.++++|.++|.||++|+||||+|.+.|.||++||.+||+|. |...+-.
T Consensus 23 ~a~~RL~kEl~~l~~~~~~g-i~~~p~---~~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~V~-F~T~i~H 97 (169)
T 1yrv_A 23 RAYLLLHRDFCDLKENNYKG-ITAKPV---SEDMMEWEVEIEGLQNSVWQGLVFQLTIHFTSEYNYAPPVVK-FITIPFH 97 (169)
T ss_dssp HHHHHHHHHHHHHHHHCCTT-EEEEEC---STTSCEEEEEEECCTTSTTTTCEEEEEEECCTTBTTBCCEEE-ESSCCCC
T ss_pred HHHHHHHHHHHHHHhCCCCC-EEEEEc---CCccccceeEEECCCCCCccceEEEEEEECCccCCCCCCcce-ecCCCcc
Confidence 46789999999999886665 777542 235679999999999999999999999999999999999995 7664100
Q ss_pred ceEEEEEecCCceEEEE-------cCCCCcHHHHHHHHhhhhCCC
Q psy15035 604 TLMINIKSNTGNTVCVN-------LDPASDIRNVKEMIAPKLGLK 641 (816)
Q Consensus 604 ~M~V~Vk~~~g~t~~v~-------V~~~~TV~~LK~~I~~~~Gip 641 (816)
-.|...+|. +.++ =.|..||..+-..|.....-|
T Consensus 98 ---PNI~~~~G~-ICL~iL~~~~~WsP~~ti~~vL~sI~sll~~P 138 (169)
T 1yrv_A 98 ---PNVDPHTGQ-PCIDFLDNPEKWNTNYTLSSILLALQVMLSNP 138 (169)
T ss_dssp ---TTBCTTTCC-BCCHHHHCGGGCCTTCCHHHHHHHHHHHHTSC
T ss_pred ---CcccCCCCe-EeehhhcCCcCCCCcCCHHHHHHHHHHHHhCC
Confidence 022233444 3333 236678888888887766433
No 131
>2kzr_A Ubiquitin thioesterase OTU1; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative, hydrolase; NMR {Mus musculus}
Probab=99.12 E-value=5.1e-11 Score=104.45 Aligned_cols=69 Identities=14% Similarity=0.262 Sum_probs=63.5
Q ss_pred eEEEEEecCCceEEEE-cCCCCcHHHHHHHHhhhhCCCCCCeEEEEC--CeecC---CCccccccCCCCCCEEEEe
Q psy15035 605 LMINIKSNTGNTVCVN-LDPASDIRNVKEMIAPKLGLKYEEVKIIFA--GKELE---DTTIISECDLGQQSILHAV 674 (816)
Q Consensus 605 M~V~Vk~~~g~t~~v~-V~~~~TV~~LK~~I~~~~Gip~~~qrLif~--Gk~L~---d~~tL~~~~I~~~stl~lv 674 (816)
|+|+||+.+|+. .++ +++++||.+||+.|++++|+|+++|+|+|+ |+.|. ++.+|++|||.+|++|||.
T Consensus 1 m~i~vr~~~G~~-~v~~l~~~~Tv~~Lk~~I~~~~gi~~~~qrL~~~~p~k~l~l~~~~~tL~~~gl~~g~~l~v~ 75 (86)
T 2kzr_A 1 WRVRCKAKGGTH-LLQGLSSRTRLRELQGQIAAITGIAPGSQRILVGYPPECLDLSDRDITLGDLPIQSGDMLIVE 75 (86)
T ss_dssp CCEEEEETTEEE-EECSCCTTCBHHHHHHHHHHHTCCCTTTCCCEESSCCCCCCCCCSSCBTTTSSCCTTCEEECC
T ss_pred CEEEEEcCCCCE-EeeecCCCCCHHHHHHHHHHHhCCCccceEEEeCCCCcccccCCCCCCHHHcCCCCCCEEEEE
Confidence 789999999965 477 999999999999999999999999999997 48874 6889999999999999999
No 132
>1jat_A Ubiquitin-conjugating enzyme E2-17.5 kDa; UEV, ligase; 1.60A {Saccharomyces cerevisiae} SCOP: d.20.1.1 PDB: 1jbb_A 2gmi_A 3hct_B 3hcu_B 4dhi_D 1j7d_B 4dhj_C 4dhz_F
Probab=99.12 E-value=1.8e-11 Score=119.28 Aligned_cols=107 Identities=22% Similarity=0.198 Sum_probs=79.6
Q ss_pred hhhHHHHHHHhhhcCCCCCcceeccccCCCCcccceEEEEeCCCCCCCCCcchhhhhchhhhhhhhhhhheeccCCCCCc
Q psy15035 525 RNFRLLEELEHGQRGVGDGTISWGLENDDDMTLTHWTGMIIGPPRTSTTGHIMDTIIGYIMSVLNEILHLFWISRKPDNT 604 (816)
Q Consensus 525 ~~~~l~~el~~~~~~~~~~~~s~gl~~~~d~~l~~w~~~i~GP~~t~~e~~~~~l~i~f~~~yp~~~p~~~~~~~~~~~~ 604 (816)
...||++||++++++++.+ ++++.. + .++++|.++|.||++|+|+||+|.+.|.||++||.+||.|. |...+-
T Consensus 6 ~~~RL~kE~~~l~~~~~~~-i~~~~~--~-~~l~~w~~~I~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~-f~t~i~-- 78 (155)
T 1jat_A 6 LPKRIIKETEKLVSDPVPG-ITAEPH--D-DNLRYFQVTIEGPEQSPYEDGIFELELYLPDDYPMEAPKVR-FLTKIY-- 78 (155)
T ss_dssp CCHHHHHHHHHHHHSCCTT-EEEEEE--T-TEEEEEEEEEECCTTSTTTTEEEEEEEECCTTTTTSCCEEE-ECSCCC--
T ss_pred HHHHHHHHHHHHHhCCCCC-EEEEEC--C-CchhEEEEEEECCCCCCccCcEEEEEEEcCCCCCCCCCcce-eecccc--
Confidence 4579999999999986555 888653 2 36779999999999999999999999999999999999994 665410
Q ss_pred eEEEEEecCCceEEEEc-----CCCCcHHHHHHHHhhhhCCC
Q psy15035 605 LMINIKSNTGNTVCVNL-----DPASDIRNVKEMIAPKLGLK 641 (816)
Q Consensus 605 M~V~Vk~~~g~t~~v~V-----~~~~TV~~LK~~I~~~~Gip 641 (816)
.-.|- .+|. +.+++ .|..||.++-..|.....-|
T Consensus 79 -HPnv~-~~G~-iCl~iL~~~W~p~~~i~~vl~~i~~ll~~p 117 (155)
T 1jat_A 79 -HPNID-RLGR-ICLDVLKTNWSPALQIRTVLLSIQALLASP 117 (155)
T ss_dssp -BTTBC-TTCC-BCCGGGTTTCCTTCCHHHHHHHHHHHHHSC
T ss_pred -cCCCC-CCCE-EEchhhccCCCCCCCHHHHHHHHHHHHhCC
Confidence 00121 2343 34443 36678888888877766443
No 133
>2f4z_A Tgtwinscan_2721 - E2 domain; ubiquitin conjugating tgtwinscan_2721, structural genomics, structural genomics consortium, SGC; 2.11A {Toxoplasma gondii} SCOP: d.20.1.1
Probab=99.11 E-value=2.2e-11 Score=122.53 Aligned_cols=108 Identities=26% Similarity=0.266 Sum_probs=77.5
Q ss_pred hhhHHHHHHHhhhcCCC------------CCcceeccccCCCCcccceEEEEeCCCCCCCCCcchhhhhchhhhhhhhhh
Q psy15035 525 RNFRLLEELEHGQRGVG------------DGTISWGLENDDDMTLTHWTGMIIGPPRTSTTGHIMDTIIGYIMSVLNEIL 592 (816)
Q Consensus 525 ~~~~l~~el~~~~~~~~------------~~~~s~gl~~~~d~~l~~w~~~i~GP~~t~~e~~~~~l~i~f~~~yp~~~p 592 (816)
+..||++||++++++++ +.+++++.. + .++++|.++|.||++||||||+|.+.|.||++||.+||
T Consensus 33 a~~RL~kEl~~l~k~~~~~~~~p~~~~~~~~gi~v~~~--~-~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP 109 (193)
T 2f4z_A 33 EQARLLKELADIQQLQRAHDSEPAATHSTSHGVSAQIV--G-GDIHRWRGFIAGPLGTPYEGGHFTLDIVIPPDYPYNPP 109 (193)
T ss_dssp HHHHHHHHHHHHHHC----------------CEEEEEE--T-TEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCC
T ss_pred HHHHHHHHHHHHHhCCCccccccccccCCCCcEEEEEc--C-CCcceEEEEEeCCCCCCcCCCEEEEEEECCCcCCCCCC
Confidence 45699999999999876 245777653 2 36789999999999999999999999999999999999
Q ss_pred hheeccCCCCCceEEEEEecCCceEEEEc-----CCCCcHHHHHHHHhhhhCC
Q psy15035 593 HLFWISRKPDNTLMINIKSNTGNTVCVNL-----DPASDIRNVKEMIAPKLGL 640 (816)
Q Consensus 593 ~~~~~~~~~~~~M~V~Vk~~~g~t~~v~V-----~~~~TV~~LK~~I~~~~Gi 640 (816)
+|. |...+-. -.|...+|. +++++ .|..||..+-..|+....-
T Consensus 110 ~V~-F~T~i~H---PNI~~~~G~-ICL~iL~~~WsP~~ti~~vL~sI~sll~~ 157 (193)
T 2f4z_A 110 KMK-FVTKIWH---PNISSQTGA-ICLDILKHEWSPALTIRTALLSIQAMLAD 157 (193)
T ss_dssp EEE-ESSCCCB---TTBCTTTCB-BCCGGGTTTCCTTSCHHHHHHHHHHHHHS
T ss_pred eEE-EecCCcc---CCCcCCCCE-EECccccccCCCCCCHHHHHHHHHHHHhC
Confidence 995 7664100 012212343 44443 3667888888877776543
No 134
>3shq_A UBLCP1; phosphatase, hydrolase; 1.96A {Drosophila melanogaster}
Probab=99.09 E-value=1e-10 Score=126.92 Aligned_cols=71 Identities=23% Similarity=0.318 Sum_probs=66.5
Q ss_pred CceEEEEEecCCceEEEEcCCCCcHHHHHHHHhhhhCCCCCCeEEE---ECCeecCCCccccccCCCCCCEEEEe
Q psy15035 603 NTLMINIKSNTGNTVCVNLDPASDIRNVKEMIAPKLGLKYEEVKII---FAGKELEDTTIISECDLGQQSILHAV 674 (816)
Q Consensus 603 ~~M~V~Vk~~~g~t~~v~V~~~~TV~~LK~~I~~~~Gip~~~qrLi---f~Gk~L~d~~tL~~~~I~~~stl~lv 674 (816)
..|.|+||+ +|++++|+|++++||++||++|++++||||++|||+ |+|+.|+|+.+|++|||++|++|||+
T Consensus 4 ~~i~i~Vk~-~g~~~~v~v~~~~Tv~~lK~~I~~~tgVpp~~QkLi~~k~~Gk~l~D~~~L~~~~ik~g~~l~L~ 77 (320)
T 3shq_A 4 KEVVVIVKW-SGKEYPVDLTDQDTVEVLRHEIFRKTQVRPERQKLLNLKYKGKTAADNVKISALELKPNFKLMMV 77 (320)
T ss_dssp CEEEEEEEE-TTEEEEEEEETTSBHHHHHHHHHHHHCCCGGGCEETTCBSSSSBCCTTSBTTSSCCC--CEEEEE
T ss_pred ceEEEEEEE-CCEEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEeecccCCcccCccccHHHcCCCCCCEEEEE
Confidence 468999998 799999999999999999999999999999999999 99999999999999999999999999
No 135
>2bep_A Ubiquitin-conjugating enzyme E2-25 kDa; ligase, E2 conjugating enzyme, protein degradatio structural proteomics in europe, spine; 1.8A {Bos taurus} SCOP: d.20.1.1 PDB: 2bf8_A
Probab=99.09 E-value=2.8e-11 Score=118.45 Aligned_cols=110 Identities=22% Similarity=0.212 Sum_probs=79.6
Q ss_pred hhhhHHHHHHHhhhcCC--CCCcceeccccCCCCcccceEEEEeCCCCCCCCCcchhhhhchhhhhhhhhhhheeccCCC
Q psy15035 524 PRNFRLLEELEHGQRGV--GDGTISWGLENDDDMTLTHWTGMIIGPPRTSTTGHIMDTIIGYIMSVLNEILHLFWISRKP 601 (816)
Q Consensus 524 p~~~~l~~el~~~~~~~--~~~~~s~gl~~~~d~~l~~w~~~i~GP~~t~~e~~~~~l~i~f~~~yp~~~p~~~~~~~~~ 601 (816)
.+..||++||++++++. ++.+++++..+ .++++|.++|.||++||||||+|.+.|.||++||++||.+. |...+
T Consensus 8 ~a~~RL~kEl~~l~~~~~~~~~~i~~~~~~---~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~-f~t~i 83 (159)
T 2bep_A 8 IAVQRIKREFKEVLKSEETSKNQIKVDLVD---ENFTELRGEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVR-FITKI 83 (159)
T ss_dssp HHHHHHHHHHHHHHHCHHHHTTSEEEEECS---SSSSEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEE-ESSCC
T ss_pred HHHHHHHHHHHHHHhcCCCCCCCEEEEeCC---CchheEEEEEECCCCCCccCCEEEEEEeCCCcCCCCCCEEE-eeCCC
Confidence 45789999999999852 34447776532 25779999999999999999999999999999999999995 76641
Q ss_pred CCceEEEEEecCCceEEEEc-----CCCCcHHHHHHHHhhhhCCC
Q psy15035 602 DNTLMINIKSNTGNTVCVNL-----DPASDIRNVKEMIAPKLGLK 641 (816)
Q Consensus 602 ~~~M~V~Vk~~~g~t~~v~V-----~~~~TV~~LK~~I~~~~Gip 641 (816)
-. -.|...+|. +.+++ .|..||..+-..|.....-|
T Consensus 84 ~H---Pni~~~~G~-iCl~iL~~~W~p~~~i~~vl~~i~~ll~~p 124 (159)
T 2bep_A 84 WH---PNISSVTGA-ICLDILKDQWAAAMTLRTVLLSLQALLAAA 124 (159)
T ss_dssp CB---TTBCTTTCB-BCCGGGTTTCCTTCCHHHHHHHHHHHHHSC
T ss_pred Cc---cCCCCCCCE-EeChhhhccCCCCCcHHHHHHHHHHHHhCC
Confidence 00 012212343 44443 35678988888887776543
No 136
>2y9m_A Ubiquitin-conjugating enzyme E2-21 kDa; ligase-transport protein complex, ubiquitin conjugating ENZY complex, peroxisomal protein; 2.60A {Saccharomyces cerevisiae} PDB: 2y9p_A 2y9o_A
Probab=99.09 E-value=2.4e-11 Score=120.48 Aligned_cols=111 Identities=21% Similarity=0.261 Sum_probs=77.6
Q ss_pred hhhhHHHHHHHhhhcCC-CC-----Ccceecc--ccCCCCcccceEEEEeCCCCCCCCCcchhhhhchhhhhhhhhhhhe
Q psy15035 524 PRNFRLLEELEHGQRGV-GD-----GTISWGL--ENDDDMTLTHWTGMIIGPPRTSTTGHIMDTIIGYIMSVLNEILHLF 595 (816)
Q Consensus 524 p~~~~l~~el~~~~~~~-~~-----~~~s~gl--~~~~d~~l~~w~~~i~GP~~t~~e~~~~~l~i~f~~~yp~~~p~~~ 595 (816)
.+.+||++||++++++. ++ +..+||. .+.++.++++|.++|+||++|||+||+|.+.|.||++||.+||+|.
T Consensus 6 ~~~~RL~kEl~~l~~~~~~~~~~~~p~~g~~~~~~p~~~~nl~~w~~~I~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~ 85 (172)
T 2y9m_A 6 TCMSRIVKEYKVILKTLASDDPIANPYRGIIESLNPIDETDLSKWEAIISGPSDTPYENHQFRILIEVPSSYPMNPPKIS 85 (172)
T ss_dssp HHHHHHHHHHHHHHHHHTCCCTTTCTTTTTEEEEEESSTTCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEE
T ss_pred HHHHHHHHHHHHHHhccCCcccccCCCCcceEEEecCCCCchhEEEEEEECCCCCcccCCEEEEEEECCCcCCCCCCEEE
Confidence 46789999999999832 22 2233332 2214446779999999999999999999999999999999999995
Q ss_pred eccC-CCCCceEEEEEecCCceEEEEc------CCCCcHHHHHHHHhhhhC
Q psy15035 596 WISR-KPDNTLMINIKSNTGNTVCVNL------DPASDIRNVKEMIAPKLG 639 (816)
Q Consensus 596 ~~~~-~~~~~M~V~Vk~~~g~t~~v~V------~~~~TV~~LK~~I~~~~G 639 (816)
|.. .+-.. .|...+|+ +.+++ .|..||..+-..|.....
T Consensus 86 -f~t~~i~HP---ni~~~~G~-iCl~iL~~~~W~p~~~i~~vL~si~~ll~ 131 (172)
T 2y9m_A 86 -FMQNNILHC---NVKSATGE-ICLNILKPEEWTPVWDLLHCVHAVWRLLR 131 (172)
T ss_dssp -ECTTSCCCT---TEETTTTE-ECCGGGSTTTCCTTCCHHHHHHHHHHHHH
T ss_pred -EeeCCeecC---CCcCCCCE-EeccccCCCCCCCcCcHHHHHHHHHHHHh
Confidence 766 42111 23333443 45543 255688888777776654
No 137
>2d07_B Ubiquitin-like protein SMT3B; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 2rpq_A 2awt_A 2io3_B 2iyd_B 1u4a_A 2k1f_A
Probab=99.07 E-value=3.3e-10 Score=100.74 Aligned_cols=78 Identities=9% Similarity=0.336 Sum_probs=72.1
Q ss_pred CCceEEEEEecCCceEEEEcCCCCcHHHHHHHHhhhhCCCCCCeEEEECCeecCCCccccccCCCCCCEEEEe-eCCCC
Q psy15035 602 DNTLMINIKSNTGNTVCVNLDPASDIRNVKEMIAPKLGLKYEEVKIIFAGKELEDTTIISECDLGQQSILHAV-KSSPE 679 (816)
Q Consensus 602 ~~~M~V~Vk~~~g~t~~v~V~~~~TV~~LK~~I~~~~Gip~~~qrLif~Gk~L~d~~tL~~~~I~~~stl~lv-r~~gg 679 (816)
+..|.|+|++.+|+.+.+.|.+++++..|+...+++.|+|++++|++|.|+.|.++.|.++|++++|++|+++ +.+||
T Consensus 15 ~~~i~ikV~~~~g~~i~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~fdG~~l~~~~Tp~dl~medgD~Idv~~~q~GG 93 (93)
T 2d07_B 15 NDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQTGG 93 (93)
T ss_dssp CCEEEEEEECTTSCEEEEEEETTSCHHHHHHHHHHHHTCCGGGEEEEETTEECCTTCCTTTTTCCTTEEEEEEECC---
T ss_pred CCeEEEEEECCCCCEEEEEEccCCHHHHHHHHHHHHhCCCccceEEEECCEEcCCCCCHHHcCCCCCCEEEEEeeccCC
Confidence 4578999999999999999999999999999999999999999999999999999999999999999999999 77776
No 138
>3k9o_A Ubiquitin-conjugating enzyme E2 K; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 3k9p_A 1yla_A 2o25_A
Probab=99.05 E-value=3.9e-11 Score=121.97 Aligned_cols=110 Identities=23% Similarity=0.209 Sum_probs=79.4
Q ss_pred hhhhHHHHHHHhhhcCCC--CCcceeccccCCCCcccceEEEEeCCCCCCCCCcchhhhhchhhhhhhhhhhheeccCCC
Q psy15035 524 PRNFRLLEELEHGQRGVG--DGTISWGLENDDDMTLTHWTGMIIGPPRTSTTGHIMDTIIGYIMSVLNEILHLFWISRKP 601 (816)
Q Consensus 524 p~~~~l~~el~~~~~~~~--~~~~s~gl~~~~d~~l~~w~~~i~GP~~t~~e~~~~~l~i~f~~~yp~~~p~~~~~~~~~ 601 (816)
....||++||++++++.+ ..+++++.. + .++++|.++|.||++|||+||+|.+.|.||++||.+||+|. |...+
T Consensus 5 ~a~~Rl~kEl~~l~~~~~~~~~~i~~~~~--~-~nl~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~-f~t~i 80 (201)
T 3k9o_A 5 IAVQRIKREFKEVLKSEETSKNQIKVDLV--D-ENFTELRGEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVR-FITKI 80 (201)
T ss_dssp TTHHHHHHHHHHHHTCHHHHTTSEEEEEC--S-TTSSEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEE-ESSCC
T ss_pred HHHHHHHHHHHHHHhCCCCCCCCEEEEEC--C-CCccEEEEEEECCCCCCCCCCEEEEEEECCCcCCCCCCccc-cccCc
Confidence 356899999999998632 233666532 3 36779999999999999999999999999999999999994 76651
Q ss_pred CCceEEEEEecCCceEEEEc-----CCCCcHHHHHHHHhhhhCCC
Q psy15035 602 DNTLMINIKSNTGNTVCVNL-----DPASDIRNVKEMIAPKLGLK 641 (816)
Q Consensus 602 ~~~M~V~Vk~~~g~t~~v~V-----~~~~TV~~LK~~I~~~~Gip 641 (816)
- .-.|-..+|. +++++ .|..||..+-..|+....-|
T Consensus 81 ~---HPnv~~~~G~-iCl~iL~~~W~p~~~i~~vL~~i~~ll~~p 121 (201)
T 3k9o_A 81 W---HPNISSVTGA-ICLDILKDQWAAAMTLRTVLLSLQALLAAA 121 (201)
T ss_dssp C---BTTBCTTTCB-BCCGGGTTTCCTTCCHHHHHHHHHHHHHSC
T ss_pred c---cCCCcCCCCe-eeCcccccCCCCCCCHHHHHHHHHHHhcCC
Confidence 0 0012222343 45543 36778888888877776543
No 139
>1wz0_A Ubiquitin-like protein SMT3B; SUMO-2, ubiquitin-like molecule, structural genomics, sentrin2, NPPFSA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.04 E-value=4.7e-10 Score=101.66 Aligned_cols=79 Identities=9% Similarity=0.336 Sum_probs=75.1
Q ss_pred CCceEEEEEecCCceEEEEcCCCCcHHHHHHHHhhhhCCCCCCeEEEECCeecCCCccccccCCCCCCEEEEe-eCCCCC
Q psy15035 602 DNTLMINIKSNTGNTVCVNLDPASDIRNVKEMIAPKLGLKYEEVKIIFAGKELEDTTIISECDLGQQSILHAV-KSSPEN 680 (816)
Q Consensus 602 ~~~M~V~Vk~~~g~t~~v~V~~~~TV~~LK~~I~~~~Gip~~~qrLif~Gk~L~d~~tL~~~~I~~~stl~lv-r~~gg~ 680 (816)
+..|+|+|++.+|+.+.+.|.+++++..|+...+++.|+|+.++|++|.|+.|.++.|..+|+++++++|+++ +..||.
T Consensus 22 ~~~I~IkVk~~~g~~i~~kVk~~t~l~kL~~~y~ek~gi~~~~~rf~FdG~~l~~~~Tp~dl~medgD~Idv~~~q~GG~ 101 (104)
T 1wz0_A 22 NDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQTSGP 101 (104)
T ss_dssp SCCEEEEEECSSSCEEEEEECTTSCHHHHHHHHHHHHTCCTTTSCEESSSSBCCTTSCTTTTTCCTTEEEEECCCCCCCS
T ss_pred CCeEEEEEECCCCCEEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEECCEEcCCCCCHHHcCCCCCCEEEEEEeccCCC
Confidence 4579999999999999999999999999999999999999999999999999999999999999999999999 888873
No 140
>3ceg_A Baculoviral IAP repeat-containing protein 6; apoptosis, ligase, protease inhibitor, thiol protease inhibitor, UBL conjugation pathway; HET: MSE; 2.01A {Homo sapiens}
Probab=99.04 E-value=5.3e-11 Score=127.87 Aligned_cols=75 Identities=15% Similarity=0.073 Sum_probs=62.0
Q ss_pred chhhhHHHHHHHhhhcCCCCCcceecc-ccCCCCcccceEEEEeCCCCCCCCCcchhhhhchhhhhhhhhhhheeccC
Q psy15035 523 VPRNFRLLEELEHGQRGVGDGTISWGL-ENDDDMTLTHWTGMIIGPPRTSTTGHIMDTIIGYIMSVLNEILHLFWISR 599 (816)
Q Consensus 523 vp~~~~l~~el~~~~~~~~~~~~s~gl-~~~~d~~l~~w~~~i~GP~~t~~e~~~~~l~i~f~~~yp~~~p~~~~~~~ 599 (816)
..|.+||++||++++++++.+. +.|+ ..+++.+|..|.++|+||++|||+||+|.+.|.||++||.+||.|. |..
T Consensus 75 ~~~~kRL~kEl~~L~k~~p~g~-~~~i~v~~~ednl~~w~~~I~GP~~TpYegG~F~l~I~fP~dYP~~PP~V~-F~T 150 (323)
T 3ceg_A 75 AARARRLAQEAVTLSTSLPLSS-SSSVFVRCDEERLDIMKVLITGPADTPYANGCFEFDVYFPQDYPSSPPLVN-LET 150 (323)
T ss_dssp HHHHHHHHHHHHHHHHHCCCCS-SCCEEEEEESSCTTEEEEEEEBCTTSTTBTCEEEEEEECCTTTTTSCCEEE-ECC
T ss_pred HHHHHHHHHHHHHHHhCCCCCc-ccceeecccCCCccccEEEEeCCCCCCcCCCEEEEEEeCCCCCCCCCCeEE-Eec
Confidence 5789999999999999977763 3332 3333345779999999999999999999999999999999999884 544
No 141
>1wm3_A Ubiquitin-like protein SMT3B; ubiquitin fold, half-open barrel, two helices, protein transport; 1.20A {Homo sapiens} SCOP: d.15.1.1 PDB: 1wm2_A 3uin_B 3uio_B 2ckh_B
Probab=99.03 E-value=7.6e-10 Score=93.64 Aligned_cols=70 Identities=10% Similarity=0.351 Sum_probs=68.2
Q ss_pred eEEEEEecCCceEEEEcCCCCcHHHHHHHHhhhhCCCCCCeEEEECCeecCCCccccccCCCCCCEEEEe
Q psy15035 605 LMINIKSNTGNTVCVNLDPASDIRNVKEMIAPKLGLKYEEVKIIFAGKELEDTTIISECDLGQQSILHAV 674 (816)
Q Consensus 605 M~V~Vk~~~g~t~~v~V~~~~TV~~LK~~I~~~~Gip~~~qrLif~Gk~L~d~~tL~~~~I~~~stl~lv 674 (816)
|+|.|++.+|+.+.+.|.+++++..|++..+++.|+|+.++|++|+|+.|.++.|.++|++++|++|+++
T Consensus 2 i~lkV~~~~g~~v~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~fdG~~l~~~~Tp~~l~medgD~Idv~ 71 (72)
T 1wm3_A 2 INLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVF 71 (72)
T ss_dssp EEEEEECTTSCEEEEEECTTSCTHHHHHHHHHHHTCCTTTCEEEETTEECCTTCCTTTTTCCTTEEEEEE
T ss_pred EEEEEECCCCCEEEEEECCCChHHHHHHHHHHHhCCCcceEEEEECCEEcCCCCCHHHcCCCCCCEEEEE
Confidence 7899999999999999999999999999999999999999999999999999999999999999999986
No 142
>3e46_A Ubiquitin-conjugating enzyme E2-25 kDa; huntington interacting, ligase, alternative splicing, cytoplasm, UBL conjugation, UBL conjugation pathway; 1.86A {Homo sapiens} SCOP: a.5.2.1 d.20.1.1 PDB: 3f92_A*
Probab=99.01 E-value=5.7e-11 Score=124.22 Aligned_cols=117 Identities=22% Similarity=0.224 Sum_probs=81.2
Q ss_pred cceeeecchhhhHHHHHHHhhhcCCC--CCcceeccccCCCCcccceEEEEeCCCCCCCCCcchhhhhchhhhhhhhhhh
Q psy15035 516 GAKVLLIVPRNFRLLEELEHGQRGVG--DGTISWGLENDDDMTLTHWTGMIIGPPRTSTTGHIMDTIIGYIMSVLNEILH 593 (816)
Q Consensus 516 Ga~~ll~vp~~~~l~~el~~~~~~~~--~~~~s~gl~~~~d~~l~~w~~~i~GP~~t~~e~~~~~l~i~f~~~yp~~~p~ 593 (816)
|++.-.......||++||+++++++. ..++++... +| ++++|.++|.||++|||+||+|.+.|.||++||.+||+
T Consensus 49 ~s~~~Ms~~a~~RL~kEl~~l~~~~~~~~~gi~v~p~--~d-nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~ 125 (253)
T 3e46_A 49 GSEFDMANIAVQRIKREFKEVLKSEETSKNQIKVDLV--DE-NFTELRGEIAGPPDTPYEGGRYQLEIKIPETYPFNPPK 125 (253)
T ss_dssp ---CCCCHHHHHHHHHHHHHHHHCHHHHTTSEEEEEC--ST-TSSEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCE
T ss_pred cccccccHHHHHHHHHHHHHHHhCCCCCCCCEEEEEC--CC-cccEEEEEEECCCCCCcCCCEEEEEEECCCCCCCCCCe
Confidence 44433334567899999999998632 233666533 33 67799999999999999999999999999999999999
Q ss_pred heeccCCCCCceEEEEEecCCceEEEEc-----CCCCcHHHHHHHHhhhhCC
Q psy15035 594 LFWISRKPDNTLMINIKSNTGNTVCVNL-----DPASDIRNVKEMIAPKLGL 640 (816)
Q Consensus 594 ~~~~~~~~~~~M~V~Vk~~~g~t~~v~V-----~~~~TV~~LK~~I~~~~Gi 640 (816)
|. |...+- .-.|-..+|. +++++ .|..||..+-..|+....-
T Consensus 126 V~-F~T~i~---HPNV~~~~G~-ICL~iL~~~WsP~~ti~~vL~sI~~ll~~ 172 (253)
T 3e46_A 126 VR-FITKIW---HPNISSVTGA-ICLDILKDQWAAAMTLRTVLLSLQALLAA 172 (253)
T ss_dssp EE-ESSCCC---BTTBCTTTCB-BCCGGGTTCCCTTCCHHHHHHHHHHHHHS
T ss_pred ee-ecCCCc---cCCccCCCCe-eecccccCCCCCCCCHHHHHHHHHHHhcC
Confidence 94 766510 0012222343 45543 3677888888777776643
No 143
>1y8x_A Ubiquitin-conjugating enzyme E2 M; ubiquitin-conjugating enzyme E2 M, ligase; 2.40A {Homo sapiens} SCOP: d.20.1.1
Probab=99.01 E-value=1.7e-10 Score=112.91 Aligned_cols=105 Identities=13% Similarity=0.089 Sum_probs=76.4
Q ss_pred hhhhHHHHHHHhhhcCCCCCcceeccccCCCCcccceEEEEeCCCCCCCCCcchhhhhchhhhhhhhhhhheeccCCCCC
Q psy15035 524 PRNFRLLEELEHGQRGVGDGTISWGLENDDDMTLTHWTGMIIGPPRTSTTGHIMDTIIGYIMSVLNEILHLFWISRKPDN 603 (816)
Q Consensus 524 p~~~~l~~el~~~~~~~~~~~~s~gl~~~~d~~l~~w~~~i~GP~~t~~e~~~~~l~i~f~~~yp~~~p~~~~~~~~~~~ 603 (816)
++.+||++||++++ .+.++++++.++ .+|++|.++| ||++|+||||+|.+.|.||++||.+||++. |...+-.
T Consensus 6 ~~~~RL~kEl~~l~---~~~~~~~~~~~~--~~l~~w~~~i-gp~~tpyegg~f~~~i~fp~~YP~~PP~v~-f~t~i~H 78 (160)
T 1y8x_A 6 AAQLRIQKDINELN---LPKTCDISFSDP--DDLLNFKLVI-CPDEGFYKSGKFVFSFKVGQGYPHDPPKVK-CETMVYH 78 (160)
T ss_dssp HHHHHHHHHHHTCC---CCTTEEEECSST--TCTTEEEEEE-CCSSSTTTTBCEEEEEECCTTTTTSCCEEE-ECSCCCB
T ss_pred HHHHHHHHHHHhcC---CCCCeEEEeccC--CccceEEEEE-CCCCCCCCCCEEEEEEeCCCcCCCCCCEEE-EecCCcc
Confidence 57899999999995 334478875333 3567999987 999999999999999999999999999995 7665110
Q ss_pred ceEEEEEecCCceEEEEc-----CCCCcHHHHHHHHhhhhCC
Q psy15035 604 TLMINIKSNTGNTVCVNL-----DPASDIRNVKEMIAPKLGL 640 (816)
Q Consensus 604 ~M~V~Vk~~~g~t~~v~V-----~~~~TV~~LK~~I~~~~Gi 640 (816)
. .|- .+|. +.+++ .|..||..+-..|.....-
T Consensus 79 P---nv~-~~G~-iCl~iL~~~W~p~~~i~~vL~~i~~ll~~ 115 (160)
T 1y8x_A 79 P---NID-LEGN-VCLNILREDWKPVLTINSIIYGLQYLFLE 115 (160)
T ss_dssp T---TBC-TTCB-BCCGGGTTTCCTTCCHHHHHHHHHHHHHS
T ss_pred C---cCC-CCCe-EEcccchhhccCCCCHHHHHHHHHHHHhC
Confidence 0 121 2343 34443 3667888888877766543
No 144
>2nvu_C NEDD8-conjugating enzyme UBC12; multifunction macromolecular complex, ubiquitin, ATP, conformational change, thioester, switch, adenylation, protein turnover, ligase; HET: ATP; 2.80A {Homo sapiens} SCOP: d.20.1.1
Probab=99.00 E-value=1.5e-10 Score=115.51 Aligned_cols=105 Identities=13% Similarity=0.084 Sum_probs=76.4
Q ss_pred chhhhHHHHHHHhhhcCCCCCcceeccccCCCCcccceEEEEeCCCCCCCCCcchhhhhchhhhhhhhhhhheeccCCCC
Q psy15035 523 VPRNFRLLEELEHGQRGVGDGTISWGLENDDDMTLTHWTGMIIGPPRTSTTGHIMDTIIGYIMSVLNEILHLFWISRKPD 602 (816)
Q Consensus 523 vp~~~~l~~el~~~~~~~~~~~~s~gl~~~~d~~l~~w~~~i~GP~~t~~e~~~~~l~i~f~~~yp~~~p~~~~~~~~~~ 602 (816)
-++.+||++||++++ ++.++++++.+++ +|++|.++| ||++||||||+|.+.|.||++||.+||.+. |...+-
T Consensus 25 ~~~~~RL~kEl~~l~---~~~~i~~~~p~~~--nl~~W~~~i-gP~~tpYegg~f~~~i~fp~~YP~~PP~v~-F~t~i~ 97 (180)
T 2nvu_C 25 SAAQLRIQKDINELN---LPKTCDISFSDPD--DLLNFKLVI-CPDEGFYKSGKFVFSFKVGQGYPHDPPKVK-CETMVY 97 (180)
T ss_dssp CHHHHHHHHHHHTCC---CCTTEEEECSSTT--CTTEEEEEE-CCCSGGGTTBCEEEEEECCTTTTTSCCEEE-ECSCCC
T ss_pred cHHHHHHHHHHHhcC---CCCCeEEEecccc--cccceEEEE-CCCCCCCCCCEEEEEEeCCCcCCCCCCcCc-eeccCc
Confidence 568899999999994 3344788754333 567999987 999999999999999999999999999995 766510
Q ss_pred CceEEEEEecCCceEEEEc-----CCCCcHHHHHHHHhhhhC
Q psy15035 603 NTLMINIKSNTGNTVCVNL-----DPASDIRNVKEMIAPKLG 639 (816)
Q Consensus 603 ~~M~V~Vk~~~g~t~~v~V-----~~~~TV~~LK~~I~~~~G 639 (816)
.. .|- .+|. +.+++ .|..||..+-..|.....
T Consensus 98 HP---NV~-~~G~-iCl~iL~~~W~p~~~i~~vL~si~~ll~ 134 (180)
T 2nvu_C 98 HP---NID-LEGN-VALNILREDWKPVLTINSIIYGLQYLFL 134 (180)
T ss_dssp BT---TBC-TTSB-BCCGGGTTSCCTTCCHHHHHHHHHHHHH
T ss_pred cC---CCC-CCCc-EEcccccccCCCCCCHHHHHHHHHHHHh
Confidence 00 121 2343 34443 366788888877776654
No 145
>3a4r_A Nfatc2-interacting protein; ubiquitin fold, coiled coil, cytoplasm, methylation, nucleus, transcription; 1.00A {Mus musculus} PDB: 3a4s_C 3rd2_A
Probab=98.99 E-value=1.6e-09 Score=93.32 Aligned_cols=74 Identities=14% Similarity=0.317 Sum_probs=70.3
Q ss_pred CCCceEEEEEecCCc-eEEEEcCCCCcHHHHHHHHhhhhCCCCCCeEEEECCeecCCCccccccCCCCCCEEEEe
Q psy15035 601 PDNTLMINIKSNTGN-TVCVNLDPASDIRNVKEMIAPKLGLKYEEVKIIFAGKELEDTTIISECDLGQQSILHAV 674 (816)
Q Consensus 601 ~~~~M~V~Vk~~~g~-t~~v~V~~~~TV~~LK~~I~~~~Gip~~~qrLif~Gk~L~d~~tL~~~~I~~~stl~lv 674 (816)
-+..|+|+|++.+|+ .+.+.|.+++++..|+...+++.|+|++++|++|.|+.|.++.|.++|++++|++|+++
T Consensus 4 ~~~~i~ikV~~~~g~~~i~~~i~~~t~l~kl~~~y~~~~gi~~~~~rf~fdG~~l~~~~Tp~~l~medgD~Idv~ 78 (79)
T 3a4r_A 4 GSQELRLRVQGKEKHQMLEISLSPDSPLKVLMSHYEEAMGLSGHKLSFFFDGTKLSGKELPADLGLESGDLIEVW 78 (79)
T ss_dssp CCCCEEEEEECSSTTCEEEEEECTTSCHHHHHHHHHHHHTCTTCCCEEEETTEECCSCCCHHHHTCCTTCEEEEE
T ss_pred CCCEEEEEEEeCCCCEEEEEEECCCChHHHHHHHHHHHhCCCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEe
Confidence 356799999999996 89999999999999999999999999999999999999999999999999999999986
No 146
>2k8h_A Small ubiquitin protein; SUMO, post-translational modifier, signaling protein; NMR {Trypanosoma brucei}
Probab=98.98 E-value=6.7e-10 Score=101.52 Aligned_cols=78 Identities=12% Similarity=0.355 Sum_probs=74.6
Q ss_pred CCceEEEEEecCCceEEEEcCCCCcHHHHHHHHhhhhCCCCCCeEEEECCeecCCCccccccCCCCCCEEEEe-eCCCC
Q psy15035 602 DNTLMINIKSNTGNTVCVNLDPASDIRNVKEMIAPKLGLKYEEVKIIFAGKELEDTTIISECDLGQQSILHAV-KSSPE 679 (816)
Q Consensus 602 ~~~M~V~Vk~~~g~t~~v~V~~~~TV~~LK~~I~~~~Gip~~~qrLif~Gk~L~d~~tL~~~~I~~~stl~lv-r~~gg 679 (816)
+..|.|+|++.+|+.+.+.|.+++++..|+...+++.|+|++++|++|.|+.|.++.|.++|+++++++|+++ +..||
T Consensus 24 ~~~I~IkVk~~~g~~i~fkVk~~t~l~kL~~ay~ek~gi~~~~~rfiFdG~~L~~~~Tp~dl~mEDgD~Idv~~~q~Gg 102 (110)
T 2k8h_A 24 TALVAVKVVNADGAEMFFRIKSRTALKKLIDTYCKKQGISRNSVRFLFDGTPIDETKTPEELGMEDDDVIDAMVEQTGG 102 (110)
T ss_dssp CCCEEEEEEETTSCCEEEEECTTSSHHHHHHHHHHHHTCCSSSCEEESSSCBCCSSSHHHHHHCSSEEEEEEECCCCCC
T ss_pred CCeEEEEEECCCCCEEEEEECCCChHHHHHHHHHHHhCCCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEEEcccCc
Confidence 4569999999999999999999999999999999999999999999999999999999999999999999999 78877
No 147
>2eke_C Ubiquitin-like protein SMT3; UBC9, SUMO binding motif, SBM, ligase/protein binding complex; 1.90A {Saccharomyces cerevisiae} SCOP: d.15.1.1
Probab=98.97 E-value=1e-09 Score=99.63 Aligned_cols=77 Identities=10% Similarity=0.329 Sum_probs=71.2
Q ss_pred CCceEEEEEecCCceEEEEcCCCCcHHHHHHHHhhhhCCCCCCeEEEECCeecCCCccccccCCCCCCEEEEe-eCCCC
Q psy15035 602 DNTLMINIKSNTGNTVCVNLDPASDIRNVKEMIAPKLGLKYEEVKIIFAGKELEDTTIISECDLGQQSILHAV-KSSPE 679 (816)
Q Consensus 602 ~~~M~V~Vk~~~g~t~~v~V~~~~TV~~LK~~I~~~~Gip~~~qrLif~Gk~L~d~~tL~~~~I~~~stl~lv-r~~gg 679 (816)
+..|+|+|++ +|+.+.+.|.+++++..|+...+++.|+++.++|++|+|+.|.++.|.++|+++++++|+++ +..||
T Consensus 29 ~~~I~IkV~~-~g~~i~fkIk~tt~l~kL~~ay~ek~gi~~~~~rF~FdG~rl~~~~Tp~dl~medgD~Idv~~~q~GG 106 (106)
T 2eke_C 29 ETHINLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHREQIGG 106 (106)
T ss_dssp CSEEEEEEEC-SSCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTEECCTTCCTTTTTCCTTEEEEEEECC---
T ss_pred CCeEEEEEec-CCcEEEEEeCCCCHHHHHHHHHHHHhCCCcccEEEEECCeEcCCCCCHHHcCCCCCCEEEEEeecccC
Confidence 4569999999 99999999999999999999999999999999999999999999999999999999999999 77775
No 148
>1yf9_A Ubiquitin carrier protein 4; SGPP, structural genomics, PSI, protein structure initiative ubiquitin conjugating enzyme; 2.00A {Leishmania major} SCOP: d.20.1.1
Probab=98.97 E-value=2.1e-10 Score=113.48 Aligned_cols=98 Identities=13% Similarity=0.123 Sum_probs=69.4
Q ss_pred hhhhHHHHHHHhhhcCCCCCcceeccccCCCCcccceEEEEeCCCCCCCCCcchhhhhchhhhhhhhhhhheeccCCCCC
Q psy15035 524 PRNFRLLEELEHGQRGVGDGTISWGLENDDDMTLTHWTGMIIGPPRTSTTGHIMDTIIGYIMSVLNEILHLFWISRKPDN 603 (816)
Q Consensus 524 p~~~~l~~el~~~~~~~~~~~~s~gl~~~~d~~l~~w~~~i~GP~~t~~e~~~~~l~i~f~~~yp~~~p~~~~~~~~~~~ 603 (816)
.+++||++||+++++++ . ++ ..++ ++++|.++|.||++|+|+||+|.+.|.||++||.+||+|. |...+-.
T Consensus 12 ~~~~RL~~El~~l~~~~-~---~v--~~~~--~l~~w~~~I~GP~~tpyegg~f~~~i~fp~~YP~~PP~v~-F~t~i~H 82 (171)
T 1yf9_A 12 RSNRRREMDYMRLCNST-R---KV--YPSD--TVAEFWVEFKGPEGTPYEDGTWMLHVQLPSDYPFKSPSIG-FCNRILH 82 (171)
T ss_dssp -CCHHHHHHHHHHHSSS-S---CE--EECS--STTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEE-ESSCCCB
T ss_pred cHHHHHHHHHHHHHhCC-C---CC--CCCC--CceEEEEEEECCCCCCccCceEEEEEEcCCCCCCCCCeEE-eecCccc
Confidence 56899999999999874 2 22 2333 5679999999999999999999999999999999999994 7654100
Q ss_pred ceEEEEEecCCceEEEEc-----CCCCcHHHHHHHH
Q psy15035 604 TLMINIKSNTGNTVCVNL-----DPASDIRNVKEMI 634 (816)
Q Consensus 604 ~M~V~Vk~~~g~t~~v~V-----~~~~TV~~LK~~I 634 (816)
. .|...+|. +++++ .+..||..+-..|
T Consensus 83 P---Ni~~~~G~-iCl~iL~~~W~p~~~i~~vL~si 114 (171)
T 1yf9_A 83 P---NVDERSGS-VCLDVINQTWTPMYQLENIFDVF 114 (171)
T ss_dssp T---TBCTTTCB-BCHHHHHHHCCTTCCTHHHHHTH
T ss_pred c---cCcccCCe-EeccccccCCCCCCcHHHHHHHH
Confidence 0 12112343 34432 3566777776554
No 149
>1wzv_A Ubiquitin-conjugating enzyme E2 L6; ligase; 2.10A {Homo sapiens} SCOP: d.20.1.1 PDB: 1wzw_A 2kjh_A
Probab=98.97 E-value=2.1e-10 Score=111.83 Aligned_cols=107 Identities=16% Similarity=0.244 Sum_probs=78.0
Q ss_pred hhhhHHHHHHHhhhcCCCCCcceeccccCCCCcccceEEEEeCCCCCCCCCcchhhhhchhhhhhhhhhhheeccCCCCC
Q psy15035 524 PRNFRLLEELEHGQRGVGDGTISWGLENDDDMTLTHWTGMIIGPPRTSTTGHIMDTIIGYIMSVLNEILHLFWISRKPDN 603 (816)
Q Consensus 524 p~~~~l~~el~~~~~~~~~~~~s~gl~~~~d~~l~~w~~~i~GP~~t~~e~~~~~l~i~f~~~yp~~~p~~~~~~~~~~~ 603 (816)
.+..||++||++++++++.| ++++. +++.++++|.++|. |++|+|+||+|.+.|.||++||.+||++. |...+-.
T Consensus 4 ~~~~RL~kEl~~l~~~~~~~-i~~~~--~~~~~l~~w~~~I~-P~~tpyegg~f~~~i~fp~~YP~~PP~v~-f~t~i~H 78 (155)
T 1wzv_A 4 MASMRVVKELEDLQKKPPPY-LRNLS--SDDANVLVWHALLL-PDQPPYHLKAFNLRISFPPEYPFKPPMIK-FTTKIYH 78 (155)
T ss_dssp -CHHHHHHHHHHHHHSCCTT-EEEEE--ECSSCTTEEEEEEC-CCSTTGGGEEEEEEEECCTTTTSSCCEEE-ESSCCCB
T ss_pred hHHHHHHHHHHHHHhCCCCC-EEEEe--cCCCchheEEEEEc-CCCCCCCCCEEEEEEECCCCCCCCCCcce-eeCCCcc
Confidence 35789999999999996655 66632 23446679999999 99999999999999999999999999995 7665100
Q ss_pred ceEEEEEecCCceEEEEc------CCCCcHHHHHHHHhhhhCC
Q psy15035 604 TLMINIKSNTGNTVCVNL------DPASDIRNVKEMIAPKLGL 640 (816)
Q Consensus 604 ~M~V~Vk~~~g~t~~v~V------~~~~TV~~LK~~I~~~~Gi 640 (816)
. .|- .+|. +.+++ .|..||..+-..|.....-
T Consensus 79 P---nV~-~~G~-iCl~iL~~~~W~p~~~i~~vl~~i~~ll~~ 116 (155)
T 1wzv_A 79 P---NVD-ENGQ-ICLPIISSENWKPCTKTCQVLEALNVLVNR 116 (155)
T ss_dssp T---TBC-TTCB-CCCGGGCTTTCCTTCCHHHHHHHHHHHHHS
T ss_pred C---cCC-CCCe-EeecCCCccCCCCCCcHHHHHHHHHHHHhC
Confidence 0 121 2343 44543 2556888888777776543
No 150
>1c4z_D UBCH7, ubiquitin conjugating enzyme E2; bilobal structure, elongated shape, E3 ubiquitin ligase, E2 ubiquitin conjugating enzyme; 2.60A {Homo sapiens} SCOP: d.20.1.1 PDB: 1fbv_C* 3sy2_C 3sqv_C
Probab=98.96 E-value=2.7e-10 Score=110.91 Aligned_cols=107 Identities=20% Similarity=0.278 Sum_probs=76.3
Q ss_pred hhhhHHHHHHHhhhcCCCCCcceeccccCCCCcccceEEEEeCCCCCCCCCcchhhhhchhhhhhhhhhhheeccCCCCC
Q psy15035 524 PRNFRLLEELEHGQRGVGDGTISWGLENDDDMTLTHWTGMIIGPPRTSTTGHIMDTIIGYIMSVLNEILHLFWISRKPDN 603 (816)
Q Consensus 524 p~~~~l~~el~~~~~~~~~~~~s~gl~~~~d~~l~~w~~~i~GP~~t~~e~~~~~l~i~f~~~yp~~~p~~~~~~~~~~~ 603 (816)
.+.+||++||++++++++.| ++.. ..++.++++|.++|. |++|+|+||+|.+.|.||++||.+||.+. |...+-.
T Consensus 2 ~a~~RL~kEl~~l~~~~~~~-~~~~--~~~~~~l~~w~~~i~-P~~tpyegg~f~~~i~fp~~YP~~PP~v~-f~t~i~H 76 (154)
T 1c4z_D 2 AASRRLMKELEEIRKCGMKN-FRNI--QVDEANLLTWQGLIV-PDNPPYDKGAFRIEINFPAEYPFKPPKIT-FKTKIYH 76 (154)
T ss_dssp --CTTHHHHHTTCSSSCCSS-CEEE--CSSCSSSSEEEEEEC-CCSSSCCSCCEEEEEECCTTTTTSCCEEE-ESSCCCC
T ss_pred cHHHHHHHHHHHHHhCCCCC-EEEe--eCCCCchheEEEEEe-CCCCCccCCeEEEEEEeCCCCCCCCCEEE-EeCCCcc
Confidence 35689999999999987665 5532 334456779999997 99999999999999999999999999995 7664110
Q ss_pred ceEEEEEecCCceEEEEc------CCCCcHHHHHHHHhhhhCC
Q psy15035 604 TLMINIKSNTGNTVCVNL------DPASDIRNVKEMIAPKLGL 640 (816)
Q Consensus 604 ~M~V~Vk~~~g~t~~v~V------~~~~TV~~LK~~I~~~~Gi 640 (816)
. .|- .+|. +.+++ .+..||.++-..|.....-
T Consensus 77 P---nv~-~~G~-iCl~iL~~~~W~p~~~i~~vl~~i~~ll~~ 114 (154)
T 1c4z_D 77 P---NID-EKGQ-VCLPVISAENWKPATKTDQVIQSLIALVND 114 (154)
T ss_dssp T---TBC-TTCB-BCCTTTSSSSCCTTCCHHHHHHHHHHHHHS
T ss_pred c---cCC-CCCE-EECCCCCCCCCCCCCcHHHHHHHHHHHHcC
Confidence 0 121 2343 34443 2456788887777766543
No 151
>2z5d_A Ubiquitin-conjugating enzyme E2 H; UBE2H, SGC, ligase, structural genomics, structural genomics consortium; 2.10A {Homo sapiens}
Probab=98.95 E-value=1.9e-10 Score=114.29 Aligned_cols=103 Identities=17% Similarity=0.188 Sum_probs=72.7
Q ss_pred hhhhHHHHHHHhhhcCCCCCcceeccccCCCCcccceEEEEeCCCCCCCCCcchhhhhchhhhhhhhhhhheeccCCCCC
Q psy15035 524 PRNFRLLEELEHGQRGVGDGTISWGLENDDDMTLTHWTGMIIGPPRTSTTGHIMDTIIGYIMSVLNEILHLFWISRKPDN 603 (816)
Q Consensus 524 p~~~~l~~el~~~~~~~~~~~~s~gl~~~~d~~l~~w~~~i~GP~~t~~e~~~~~l~i~f~~~yp~~~p~~~~~~~~~~~ 603 (816)
++.+||++||+++++ +| +++++. +| ++.|.++|.||++|||+||+|.+.|.||++||.+||.|. |...+-.
T Consensus 25 ~a~~RL~kEl~~l~~---~g-~~v~~~--dd--l~~W~~~I~GP~~tpYegG~f~l~i~fp~~YP~~PP~V~-F~t~i~H 95 (179)
T 2z5d_A 25 PGKRRMDTDVIKLIE---SK-HEVTIL--GG--LNEFVVKFYGPQGTPYEGGVWKVRVDLPDKYPFKSPSIG-FMNKIFH 95 (179)
T ss_dssp HHHHHHHHHHHHHHH---SS-SCEEEE--EE--TTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEE-ESSCCCB
T ss_pred HHHHHHHHHHHhcCc---CC-CEEEEC--CC--CceeEEEEECCCCCCccCCEEEEEeeCCCCCCCCCceEE-EecCCcc
Confidence 467999999999984 33 677764 33 569999999999999999999999999999999999984 7664100
Q ss_pred ceEEEEEecCCceEEEEc-----CCCCcHHHHHHH-HhhhhC
Q psy15035 604 TLMINIKSNTGNTVCVNL-----DPASDIRNVKEM-IAPKLG 639 (816)
Q Consensus 604 ~M~V~Vk~~~g~t~~v~V-----~~~~TV~~LK~~-I~~~~G 639 (816)
. .|-..+|. +++++ .|..||..+-.. |+....
T Consensus 96 P---NV~~~~G~-ICL~iL~~~WsP~~ti~~iL~s~I~~Ll~ 133 (179)
T 2z5d_A 96 P---NIDEASGT-VCLDVINQTWTALYDLTNIFESFLPQLLA 133 (179)
T ss_dssp T---TBCTTTCB-BCHHHHHHHCCTTCCTTHHHHTHHHHHHH
T ss_pred C---cCCCCCCe-EeccccccCCCCCCCHHHHHHHHHHHHHh
Confidence 0 12111343 34432 356677766655 555443
No 152
>4ddg_A Ubiquitin-conjugating enzyme E2 D2, ubiquitin THI OTUB1; inhibition, hydrolase-ligase complex; 3.30A {Homo sapiens} PDB: 4ddi_A
Probab=98.93 E-value=3.5e-10 Score=126.47 Aligned_cols=107 Identities=21% Similarity=0.247 Sum_probs=82.2
Q ss_pred hhhHHHHHHHhhhcCCCCCcceeccccCCCCcccceEEEEeCCCCCCCCCcchhhhhchhhhhhhhhhhheeccCCCCCc
Q psy15035 525 RNFRLLEELEHGQRGVGDGTISWGLENDDDMTLTHWTGMIIGPPRTSTTGHIMDTIIGYIMSVLNEILHLFWISRKPDNT 604 (816)
Q Consensus 525 ~~~~l~~el~~~~~~~~~~~~s~gl~~~~d~~l~~w~~~i~GP~~t~~e~~~~~l~i~f~~~yp~~~p~~~~~~~~~~~~ 604 (816)
...||++||++++++++.| ++++.. +.++++|.++|.||++|||+||+|.+.|.||++||.+||+|. |.+.+-..
T Consensus 4 a~~RL~kEl~~l~~~~~~~-~~~~p~---~~nl~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~-f~t~i~HP 78 (399)
T 4ddg_A 4 ALKRIHKELNDLARDPPAQ-CSAGPV---GDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVA-FTTRIYHP 78 (399)
T ss_dssp HHHHHHHHHHHHHHSCCSS-EEEEEE---TTEEEEEEEEEECCTTSSSTTCEEEEEEECCSSTTTSCCEEE-ESSCCCCT
T ss_pred HHHHHHHHHHHHHhCCCCC-EEEEEc---CCcceEEEEEEECCCCCCCCCCEEEEEEECCcccCCCCcEEE-eecccccc
Confidence 4689999999999996666 787643 236789999999999999999999999999999999999995 77652111
Q ss_pred eEEEEEecCCceEEEEc-----CCCCcHHHHHHHHhhhhCCC
Q psy15035 605 LMINIKSNTGNTVCVNL-----DPASDIRNVKEMIAPKLGLK 641 (816)
Q Consensus 605 M~V~Vk~~~g~t~~v~V-----~~~~TV~~LK~~I~~~~Gip 641 (816)
.|- .+|. +++++ .|..||..+-..|.....-|
T Consensus 79 ---nv~-~~G~-iCl~il~~~W~p~~~i~~vL~~i~~ll~~p 115 (399)
T 4ddg_A 79 ---NIN-SNGS-ISLDILRSQWSPALTISKVLLSICSLLCDP 115 (399)
T ss_dssp ---TBC-TTCB-BCCGGGTTSCCTTCCHHHHHHHHHHHHHSC
T ss_pred ---ccC-CCCe-EeCcccccCCCccccHHHHHHHHHHHHcCC
Confidence 121 2344 45554 57789999888888776543
No 153
>2onu_A Ubiquitin-conjugating enzyme, putative; UBC, plasmodium FAL structural genomics consortium, SGC, ligase; HET: PG4; 2.38A {Plasmodium falciparum}
Probab=98.92 E-value=2.1e-10 Score=111.37 Aligned_cols=101 Identities=19% Similarity=0.206 Sum_probs=71.1
Q ss_pred hhHHHHHHHhhhcCCCCCcceeccccCCCCcccceEEEEeCCCCCCCCCcchhhhhchhhhhhhhhhhheeccCCCCCce
Q psy15035 526 NFRLLEELEHGQRGVGDGTISWGLENDDDMTLTHWTGMIIGPPRTSTTGHIMDTIIGYIMSVLNEILHLFWISRKPDNTL 605 (816)
Q Consensus 526 ~~~l~~el~~~~~~~~~~~~s~gl~~~~d~~l~~w~~~i~GP~~t~~e~~~~~l~i~f~~~yp~~~p~~~~~~~~~~~~M 605 (816)
.+||++||+++++. | +++++. +.++++|.++|.||++|+|+||+|.+.|.||++||.+||.+. |...+-..
T Consensus 4 ~~Rl~kEl~~l~~~---~-~~v~~~---~~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~-f~t~i~HP- 74 (152)
T 2onu_A 4 LTRKQCDFTKLIMA---G-YDLELN---NGSTQDFDVMFHGPNGTAYEGGIWKVHVTLPDDYPFASPSIG-FMNKLLHP- 74 (152)
T ss_dssp CCHHHHTHHHHHHH---T-CCEEEE---TTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEE-ESSCCCCT-
T ss_pred HHHHHHHHHhcCcC---C-CEEEEc---cCccceEEEEEECCCCCcccceEEEEEEcCcccCCCCCCeEE-EecCCccC-
Confidence 47999999999864 3 566543 236789999999999999999999999999999999999994 76641000
Q ss_pred EEEEEecCCceEEEEc-----CCCCcHHHHHHH-Hhhhh
Q psy15035 606 MINIKSNTGNTVCVNL-----DPASDIRNVKEM-IAPKL 638 (816)
Q Consensus 606 ~V~Vk~~~g~t~~v~V-----~~~~TV~~LK~~-I~~~~ 638 (816)
.|...+|. +.+++ .|..||..+-.. |+...
T Consensus 75 --ni~~~~G~-iCl~il~~~W~p~~~i~~vl~~ii~~Ll 110 (152)
T 2onu_A 75 --NVDEASGS-VCLDVINQTWTPLYSLVNVFEVFLPQLL 110 (152)
T ss_dssp --TBCTTTCB-BCHHHHHHHCCTTCCHHHHHHTHHHHHH
T ss_pred --cCcCcCCe-EecccccccCCCCCCHHHHHHHHHHHHH
Confidence 12112343 34432 366777776654 34443
No 154
>3o2u_A NEDD8-conjugating enzyme UBC12; E2 conjugase, ligase; 2.00A {Saccharomyces cerevisiae} PDB: 3tdi_C
Probab=98.88 E-value=1e-09 Score=110.34 Aligned_cols=108 Identities=17% Similarity=0.173 Sum_probs=76.9
Q ss_pred chhhhHHHHHHHhhhcCCCCCcceecc---ccCCCCccc-ceEEEEeCCCCCCCCCcchhhhhchhhhhhhhhhhheecc
Q psy15035 523 VPRNFRLLEELEHGQRGVGDGTISWGL---ENDDDMTLT-HWTGMIIGPPRTSTTGHIMDTIIGYIMSVLNEILHLFWIS 598 (816)
Q Consensus 523 vp~~~~l~~el~~~~~~~~~~~~s~gl---~~~~d~~l~-~w~~~i~GP~~t~~e~~~~~l~i~f~~~yp~~~p~~~~~~ 598 (816)
.+..+||++||++++ .+++++++. .+++|++++ +|.++|. |++|||+||+|.+.|.||++||.+||.|. |.
T Consensus 28 s~a~~RL~kEl~~l~---~~~~i~~~~~~~p~~~nl~~~~~w~~~I~-p~~tpyegg~f~~~i~fp~~YP~~PP~v~-f~ 102 (190)
T 3o2u_A 28 SAARIRLKRDLDSLD---LPPTVTLNVITSPDSADRSQSPKLEVIVR-PDEGYYNYGSINFNLDFNEVYPIEPPKVV-CL 102 (190)
T ss_dssp CHHHHHHHHHHHTCC---CCTTEEEEEEECTTCCCTTSCCEEEEEEC-CSSSTTTTCCEEEEEECCTTTTTSCCEEE-EC
T ss_pred cHHHHHHHHHHHhcc---CCCCEEEEecCCCCCccCCcCCeEEEEEc-CCCCCCCCCEEEEEEECCCCCCCCCceeE-Ee
Confidence 567899999999999 334477763 344444433 9999986 88899999999999999999999999984 76
Q ss_pred CCCCCceEEEEEecCCceEEEEc-----CCCCcHHHHHHHHhhhhCC
Q psy15035 599 RKPDNTLMINIKSNTGNTVCVNL-----DPASDIRNVKEMIAPKLGL 640 (816)
Q Consensus 599 ~~~~~~M~V~Vk~~~g~t~~v~V-----~~~~TV~~LK~~I~~~~Gi 640 (816)
..+-.. .| ..+|. +++++ .|..||..+-..|.....-
T Consensus 103 t~i~HP---nV-~~~G~-iCl~iL~~~W~p~~~i~~vL~~i~~ll~~ 144 (190)
T 3o2u_A 103 KKIFHP---NI-DLKGN-VCLNILREDWSPALDLQSIITGLLFLFLE 144 (190)
T ss_dssp SCCCCT---TB-CTTSB-BCCGGGTTTCCTTCCHHHHHHHHHHHHHS
T ss_pred cCcccC---CC-CCCCe-EechhccCCCCCCCCHHHHHHHHHHHHhC
Confidence 651110 12 12343 44442 3677888888777766543
No 155
>4ds2_A Ubiquitin-conjugating enzyme E2, putative; structural genomics, PSI, protein structure initiative; 2.63A {Trypanosoma cruzi}
Probab=98.86 E-value=3.8e-10 Score=111.31 Aligned_cols=107 Identities=15% Similarity=0.208 Sum_probs=74.1
Q ss_pred hhhhHHHHHHHhhhcCC-------C----CCcceeccccCCCCcccceEEEEeCCCCCCCC--Ccchhhhhchhhhhhhh
Q psy15035 524 PRNFRLLEELEHGQRGV-------G----DGTISWGLENDDDMTLTHWTGMIIGPPRTSTT--GHIMDTIIGYIMSVLNE 590 (816)
Q Consensus 524 p~~~~l~~el~~~~~~~-------~----~~~~s~gl~~~~d~~l~~w~~~i~GP~~t~~e--~~~~~l~i~f~~~yp~~ 590 (816)
.+..||++||+++++++ . ...+.+. +++.++++|.++|.||++|+|+ ||.|.+.|.||++||.+
T Consensus 8 ~a~kRL~kEl~~l~~~~~~~~~~~~~~~~~~~i~~~---~~~~nl~~w~~~i~Gp~~tpye~~gg~f~~~i~fp~~YP~~ 84 (167)
T 4ds2_A 8 ISNKRIIKDLKLLLEEVDANNEANSSGSPHSTAIFS---VDTDTIYNWILKVKAPADSVYGGAGNTYQLSVLFSDDYPHE 84 (167)
T ss_dssp CCCHHHHHHHHHHHHHHHHHTTC----CCSSCEEEE---EEESSTTEEEEEEECCTTSGGGTTCCEEEEEEECCTTTTTS
T ss_pred HHHHHHHHHHHHHHhCcccccccccccCCCCcEEEE---eCCCcccEEEEEEECCCCCCccCCCCEEEEEEECCCCCCCC
Confidence 35689999999999875 1 2224442 3344677999999999999999 99999999999999999
Q ss_pred hhhheeccCCCCCceEEEEEecCCceEEEEc-----CCCCcHHHH-HHHHhhhhC
Q psy15035 591 ILHLFWISRKPDNTLMINIKSNTGNTVCVNL-----DPASDIRNV-KEMIAPKLG 639 (816)
Q Consensus 591 ~p~~~~~~~~~~~~M~V~Vk~~~g~t~~v~V-----~~~~TV~~L-K~~I~~~~G 639 (816)
||+|. |...+-. -.|- .+|. +++++ .+..||..+ ...+.....
T Consensus 85 pP~v~-f~t~i~H---Pnv~-~~G~-iCl~il~~~W~p~~~i~~vll~~l~~l~~ 133 (167)
T 4ds2_A 85 PPTVR-FVTPVYS---PLVT-GEGG-ICDRMVNDFWTPDQHASDVIKLVLDRVFS 133 (167)
T ss_dssp CCEEE-ESSCCCC---SSCC-TTSC-CCTHHHHTTCCTTSCHHHHHHHHHHHHHT
T ss_pred CCEEE-EeCCccc---ccCC-CCCE-EEcccCcCCCCCCCChHHHHHHHHHHHHh
Confidence 99985 7665211 0121 2343 44443 567788773 444554443
No 156
>1zuo_A Hypothetical protein LOC92912; ligase, ubiquitin-conjugating enzyme, structural genomics consortium ,SGC; 1.80A {Homo sapiens} SCOP: d.20.1.1 PDB: 2qgx_A
Probab=98.86 E-value=3e-10 Score=113.79 Aligned_cols=112 Identities=20% Similarity=0.164 Sum_probs=81.3
Q ss_pred cchhhhHHHHHHHhhhcCCC--CCcceeccccCCCCcccceEEEEeCC-CCCCCCC-----------cchhhhhchhhhh
Q psy15035 522 IVPRNFRLLEELEHGQRGVG--DGTISWGLENDDDMTLTHWTGMIIGP-PRTSTTG-----------HIMDTIIGYIMSV 587 (816)
Q Consensus 522 ~vp~~~~l~~el~~~~~~~~--~~~~s~gl~~~~d~~l~~w~~~i~GP-~~t~~e~-----------~~~~l~i~f~~~y 587 (816)
...+.+||++||++++++++ .+.+++++.+ .+|++|.++|.|| ++|||+| |.|.+.|.||++|
T Consensus 25 s~~a~~RL~kEl~~l~~~~~~~~~~~~~~p~~---dnl~~W~~~I~Gp~~~tpy~ggl~~~~~~~g~g~f~l~i~fp~~Y 101 (186)
T 1zuo_A 25 SVQASDRLMKELRDIYRSQSYKTGIYSVELIN---DSLYDWHVKLQKVDPDSPLHSDLQILKEKEGIEYILLNFSFKDNF 101 (186)
T ss_dssp CHHHHHHHHHHHHHHHTSHHHHTTSEEEEEET---TEEEEEEEEECCCCTTSHHHHHHHHHHHHHSCCSEEEEEECCTTT
T ss_pred cHHHHHHHHHHHHHHHhCCCCCCCcEEEEEcC---CccceeEEEEECCCCCCCccccchhhccccCceEEEEEEECCCCC
Confidence 45678999999999999863 4557876532 3678999999998 8999998 8999999999999
Q ss_pred hhhhhhheeccCCCCCceEE-EEEecCCceEEEEc------CCCCcHHHHHHHHhhhhCCCC
Q psy15035 588 LNEILHLFWISRKPDNTLMI-NIKSNTGNTVCVNL------DPASDIRNVKEMIAPKLGLKY 642 (816)
Q Consensus 588 p~~~p~~~~~~~~~~~~M~V-~Vk~~~g~t~~v~V------~~~~TV~~LK~~I~~~~Gip~ 642 (816)
|.+||.|. |...+ ..- .| ..+|. +++++ .|..||..+-..|.....-|.
T Consensus 102 P~~PP~V~-f~tpi---~hPnnV-~~~G~-ICL~iL~~~~WsP~~ti~~VL~sI~slL~~p~ 157 (186)
T 1zuo_A 102 PFDPPFVR-VVLPV---LSGGYV-LGGGA-LCMELLTKQGWSSAYSIESVIMQINATLVKGK 157 (186)
T ss_dssp TSSCCEEE-EEESC---EESTTB-CGGGB-BCCGGGSTTTCCTTSCHHHHHHHHHHHHHHTT
T ss_pred CCCCCeEE-EeCCc---cCCCcc-CCCCc-EEeccCCCCCCCCcCcHHHHHHHHHHHHcCCC
Confidence 99999984 54421 000 01 11333 45543 256689998888887765553
No 157
>1wjn_A Tubulin-folding protein TBCE; ubiquitin-like domain, progressive motor neuropathy, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=98.78 E-value=1.9e-08 Score=89.94 Aligned_cols=73 Identities=16% Similarity=0.214 Sum_probs=64.0
Q ss_pred CCceEEEEEe---cCCceEEEEcCCCCcHHHHHHHHhhhhCCCCCCeEEEECC-------eec-CCCccccccCCCCCCE
Q psy15035 602 DNTLMINIKS---NTGNTVCVNLDPASDIRNVKEMIAPKLGLKYEEVKIIFAG-------KEL-EDTTIISECDLGQQSI 670 (816)
Q Consensus 602 ~~~M~V~Vk~---~~g~t~~v~V~~~~TV~~LK~~I~~~~Gip~~~qrLif~G-------k~L-~d~~tL~~~~I~~~st 670 (816)
++.+.|+|+. .+|+.+.+.+++++||++||.+|+..+|+|+..|+|+|.+ ..| +|..+|+.|+|.+|++
T Consensus 7 ~~~v~l~I~~~~~~~~~~~e~~l~~~~TV~~LK~~i~~~~gip~~~q~L~~~~~~~~~~~~~L~~d~~~L~~y~i~~G~~ 86 (97)
T 1wjn_A 7 GQLLTLKIKCSNQPERQILEKQLPDSMTVQKVKGLLSRLLKVPVSELLLSYESSKMPGREIELENDLQPLQFYSVENGDC 86 (97)
T ss_dssp SCEEEEEEEESSCSSSCCEEEEEETTSBHHHHHHHHHTTTTCCTTTCEEEEECTTSCSCEEECCCSSSBSGGGTCCTTCE
T ss_pred CccEEEEEEecCCCCCcEEEEECCCCCCHHHHHHHHHHHHCCChhHeEEEEEcCCCCceeeccCCCcccHhhcCCCCCCE
Confidence 4567888886 3678899999999999999999999999999999999873 225 6888999999999999
Q ss_pred EEEe
Q psy15035 671 LHAV 674 (816)
Q Consensus 671 l~lv 674 (816)
|||.
T Consensus 87 I~V~ 90 (97)
T 1wjn_A 87 LLVR 90 (97)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 9999
No 158
>3kyd_D Small ubiquitin-related modifier 1; SUMO, thioester, adenylation, inhibitor, TETR intermediate, ligase, nucleus, phosphoprotein; HET: VMX; 2.61A {Homo sapiens} SCOP: d.15.1.1
Probab=98.36 E-value=1.4e-06 Score=79.78 Aligned_cols=72 Identities=10% Similarity=0.358 Sum_probs=69.3
Q ss_pred CceEEEEEecCCceEEEEcCCCCcHHHHHHHHhhhhCCCCCCeEEEECCeecCCCccccccCCCCCCEEEEe
Q psy15035 603 NTLMINIKSNTGNTVCVNLDPASDIRNVKEMIAPKLGLKYEEVKIIFAGKELEDTTIISECDLGQQSILHAV 674 (816)
Q Consensus 603 ~~M~V~Vk~~~g~t~~v~V~~~~TV~~LK~~I~~~~Gip~~~qrLif~Gk~L~d~~tL~~~~I~~~stl~lv 674 (816)
..++|.|+..+|..+.+.|.+++++..|+...+++.|+++.++|++|.|+.|.++.|..++++++|++|.++
T Consensus 39 ~~I~LKV~~qdg~ev~fkIk~tt~L~KLm~aY~er~Gl~~~~irFlFDG~rI~~~~TP~dL~MEDgD~IdV~ 110 (115)
T 3kyd_D 39 EYIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTPKELGMEEEDVIEVY 110 (115)
T ss_dssp CEEEEEEECTTSCEEEEEEETTSCTHHHHHHHHHHHTCCTTSEEEEETTEECCTTCCTTTTTCCTTCEEEEE
T ss_pred CeEEEEEEcCCCCEEEEEEccCChHHHHHHHHHHHhCCChhhEEEEECCeECCCCCCHHHcCCCCCCEEEEE
Confidence 468899999999999999999999999999999999999999999999999999999999999999999998
No 159
>3pge_A SUMO-modified proliferating cell nuclear antigen; DNA replication, DNA binding protein; 2.80A {Saccharomyces cerevisiae}
Probab=98.32 E-value=1.5e-06 Score=87.25 Aligned_cols=79 Identities=10% Similarity=0.324 Sum_probs=72.5
Q ss_pred CCceEEEEEecCCceEEEEcCCCCcHHHHHHHHhhhhCCCCCCeEEEECCeecCCCccccccCCCCCCEEEEe-eCCCCC
Q psy15035 602 DNTLMINIKSNTGNTVCVNLDPASDIRNVKEMIAPKLGLKYEEVKIIFAGKELEDTTIISECDLGQQSILHAV-KSSPEN 680 (816)
Q Consensus 602 ~~~M~V~Vk~~~g~t~~v~V~~~~TV~~LK~~I~~~~Gip~~~qrLif~Gk~L~d~~tL~~~~I~~~stl~lv-r~~gg~ 680 (816)
+.-++|.|+. +|..+.+.|.+++++..|+...+++.|+|+.++|++|.|+.|.++.|..++++++|++|+++ +..||.
T Consensus 27 ~~~I~LkV~~-~g~~v~fkIk~~t~l~kL~~ay~er~Gi~~~~~RF~FdG~rI~~~~TP~dL~MEdgD~Idv~~~q~gg~ 105 (200)
T 3pge_A 27 ETHINLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHREQIGGG 105 (200)
T ss_dssp CCCEEEEEEC-SSCEEEEEECTTSCTHHHHHHHHHHHSSCGGGEEEEETTEECCTTCCTTTTTCCTTEEEEEEECCSCCC
T ss_pred CCeEEEEEec-CCCEEEEEEecCCHHHHHHHHHHHHhCCChhhEEEEECCEEcCCCCCHHHcCCCCCCEEEEEeccCcCc
Confidence 4568888975 89999999999999999999999999999999999999999999999999999999999999 777774
Q ss_pred C
Q psy15035 681 N 681 (816)
Q Consensus 681 ~ 681 (816)
+
T Consensus 106 k 106 (200)
T 3pge_A 106 G 106 (200)
T ss_dssp -
T ss_pred C
Confidence 3
No 160
>3tix_A Ubiquitin-like protein SMT3, RNA-induced transcri silencing complex protein TAS3; PIN, rossmann fold, SPOC, alpha-helical hairpin, heterochrom silencing, RITS, RNAI, argonaute; 2.90A {Saccharomyces cerevisiae}
Probab=98.22 E-value=1.9e-06 Score=84.79 Aligned_cols=79 Identities=11% Similarity=0.307 Sum_probs=73.0
Q ss_pred CCceEEEEEecCCceEEEEcCCCCcHHHHHHHHhhhhCCCCCCeEEEECCeecCCCccccccCCCCCCEEEEe-eCCCCC
Q psy15035 602 DNTLMINIKSNTGNTVCVNLDPASDIRNVKEMIAPKLGLKYEEVKIIFAGKELEDTTIISECDLGQQSILHAV-KSSPEN 680 (816)
Q Consensus 602 ~~~M~V~Vk~~~g~t~~v~V~~~~TV~~LK~~I~~~~Gip~~~qrLif~Gk~L~d~~tL~~~~I~~~stl~lv-r~~gg~ 680 (816)
+..+.|.|+. +|..+.+.|.+++++..|+...+++.|+|+.++|++|.|+.|.++.|..++++++|++|+++ ...||.
T Consensus 55 ~e~InLKVk~-dG~eV~FKIKrtTpL~KLmeAYcERqGL~~~sIRFLFDGqRI~~ddTPeDLdMEDGDtIDV~leQ~GG~ 133 (207)
T 3tix_A 55 ETHINLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLTFLYDGIEIQADQTPEDLDMEDNDIIEAHREQIGGL 133 (207)
T ss_dssp CCEEEEEEEC-SSCEEEEEEETTSCTHHHHHHHHHHTTCCGGGSCEEETTEECCSSCCTTTTTCCTTEEEEECCCCCTTG
T ss_pred CCcEEEEEec-CCCEEEEEEccCChHHHHHHHHHHHhCCCcccEEEEECCeecCCCCCHHHcCCCCCCEEEEEEeccCCC
Confidence 4467888874 88999999999999999999999999999999999999999999999999999999999999 888874
Q ss_pred C
Q psy15035 681 N 681 (816)
Q Consensus 681 ~ 681 (816)
.
T Consensus 134 ~ 134 (207)
T 3tix_A 134 P 134 (207)
T ss_dssp G
T ss_pred c
Confidence 3
No 161
>2z6o_A UFM1-conjugating enzyme 1; UFC1, ubiquitin, UBL, polymorphism, UBL conjugation pathway, ligase; 1.60A {Homo sapiens} PDB: 2z6p_A 1ywz_A 2in1_A 2k07_A 3e2g_A 3evx_A
Probab=98.15 E-value=2.8e-07 Score=88.83 Aligned_cols=63 Identities=16% Similarity=0.084 Sum_probs=52.5
Q ss_pred hhHHHHHHHhhhcCCCCCcceeccccCCCCcccceEEEEeCCCCCCCCCc----------chhhhhchhhhhhhhhhhhe
Q psy15035 526 NFRLLEELEHGQRGVGDGTISWGLENDDDMTLTHWTGMIIGPPRTSTTGH----------IMDTIIGYIMSVLNEILHLF 595 (816)
Q Consensus 526 ~~~l~~el~~~~~~~~~~~~s~gl~~~~d~~l~~w~~~i~GP~~t~~e~~----------~~~l~i~f~~~yp~~~p~~~ 595 (816)
..||++|++.+++. +. +.. .++++|.+.|.||.+|+|||+ .|.+.|.||++||.+||++-
T Consensus 34 ~~RL~eE~k~L~k~-------v~--p~k-~n~~~W~~ii~Gp~gT~WeGgcw~~~~~~~y~F~L~~~fPe~YP~~PPeV~ 103 (172)
T 2z6o_A 34 VQRLKEEYQSLIRY-------VE--NNK-NADNDWFRLESNKEGTRWFGKCWYIHDLLKYEFDIEFDIPITYPTTAPEIA 103 (172)
T ss_dssp HHHHHHHHHHHHHH-------HH--HHH-HTTCCCEEEEECTTSCEEEEEEEEEETTEEEEEEEEEECCTTTTTSCCCCB
T ss_pred HHHHHHHHHHHHHH-------hc--cCc-cccceeEEeecCCCCCcccCcccccccccceEEEEEEECCCCCCCCCCeee
Confidence 56999999999972 21 212 244589999999999999999 99999999999999999994
Q ss_pred eccC
Q psy15035 596 WISR 599 (816)
Q Consensus 596 ~~~~ 599 (816)
|..
T Consensus 104 -F~~ 106 (172)
T 2z6o_A 104 -VPE 106 (172)
T ss_dssp -CGG
T ss_pred -eCC
Confidence 754
No 162
>2pjh_A Protein NPL4, nuclear protein localization protein 4 homolog; UFD1, NPL4, AAA, protein binding, transport protein; NMR {Mus musculus}
Probab=98.13 E-value=1.3e-06 Score=75.14 Aligned_cols=72 Identities=8% Similarity=0.214 Sum_probs=61.6
Q ss_pred CCceEEEEEecCCceEEEEcCCCCcHHHHHHHHhhhhCCCCCCeEEEECCee-----cCCCccccccCCCCCCEEEEe
Q psy15035 602 DNTLMINIKSNTGNTVCVNLDPASDIRNVKEMIAPKLGLKYEEVKIIFAGKE-----LEDTTIISECDLGQQSILHAV 674 (816)
Q Consensus 602 ~~~M~V~Vk~~~g~t~~v~V~~~~TV~~LK~~I~~~~Gip~~~qrLif~Gk~-----L~d~~tL~~~~I~~~stl~lv 674 (816)
..+|.|.||+.+| ++.|+|++++|+.+|+++|++.+++|++.|.|.++-.. +.++.+|+++||..|++|++.
T Consensus 2 ~~~m~lRvrs~~G-~~Ri~v~~~~t~~~L~~~I~~~~~i~~~~~~l~~~~~p~~~l~~~~~~~l~~lgl~hGd~l~l~ 78 (80)
T 2pjh_A 2 AESIIIRVQSPDG-VKRITATKRETAATFLKKVAKEFGFQNNGFSVYINRNKTGEITASSSKSLHLLKIKHGDLLFLF 78 (80)
T ss_dssp CCCCCCEEECSSE-EEECCCCSSCCHHHHHHHHHHHTCCCTTTCCCCCSCCGGGGSSSCCCCTTTTTCCCTTCCEEC-
T ss_pred CCcEEEEEECCCC-CEEEEcCCcChHHHHHHHHHHHcCCCCCcceEEecCCCCCcccCCCCCCHHHcCCCCCCEEEEe
Confidence 4568999999877 57799999999999999999999999998888665554 347889999999999999875
No 163
>3v7o_A Minor nucleoprotein VP30; ssgcid, seattle structural genomics center for infectious disease, SMT, transcription; 2.25A {Reston ebolavirus}
Probab=97.94 E-value=1.3e-06 Score=87.20 Aligned_cols=77 Identities=12% Similarity=0.345 Sum_probs=0.8
Q ss_pred CCceEEEEEecCCceEEEEcCCCCcHHHHHHHHhhhhCCCCCCeEEEECCeecCCCccccccCCCCCCEEEEe-eCCCC
Q psy15035 602 DNTLMINIKSNTGNTVCVNLDPASDIRNVKEMIAPKLGLKYEEVKIIFAGKELEDTTIISECDLGQQSILHAV-KSSPE 679 (816)
Q Consensus 602 ~~~M~V~Vk~~~g~t~~v~V~~~~TV~~LK~~I~~~~Gip~~~qrLif~Gk~L~d~~tL~~~~I~~~stl~lv-r~~gg 679 (816)
+..|.|.| ..+|..+.+.|.+++++..|++..+++.|+|+.++|++|+|+.+.++.|..++++++|++|+++ ...||
T Consensus 19 ~e~InLKV-~qdGseV~FKIKrtTpL~KLM~AYcERqGLs~~siRFLFDGqRI~dddTPadL~MEDGDtIDV~leQ~GG 96 (227)
T 3v7o_A 19 ETHINLKV-SDGSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHREQIGG 96 (227)
T ss_dssp ------------------------------------------------------------------------------C
T ss_pred CCeEEEEE-eCCCCEEEEEEccCChHHHHHHHHHHHhCCCccceEEEECCEecCCCCCHHHcCCCCCCEEEEEecccCC
Confidence 44688888 6689999999999999999999999999999999999999999999999999999999999999 77777
No 164
>4efo_A Serine/threonine-protein kinase TBK1; ubiquitin like domain, transferase; 1.77A {Homo sapiens}
Probab=97.88 E-value=1.9e-05 Score=69.50 Aligned_cols=64 Identities=8% Similarity=0.133 Sum_probs=51.7
Q ss_pred ecCCceEEEEcCCCCcHHHHHHHHhhhhCCCCCCeEEEECCeecC--CCccccccCC-CCCCEEEEe
Q psy15035 611 SNTGNTVCVNLDPASDIRNVKEMIAPKLGLKYEEVKIIFAGKELE--DTTIISECDL-GQQSILHAV 674 (816)
Q Consensus 611 ~~~g~t~~v~V~~~~TV~~LK~~I~~~~Gip~~~qrLif~Gk~L~--d~~tL~~~~I-~~~stl~lv 674 (816)
..++..+.+.+.+++||..||+.|++++|||+++|+|+|.|+.|. ...+-..|.- ...+-|.|+
T Consensus 20 ~~~a~~h~v~I~~~etv~~~ke~V~eqTgIp~~~Q~LL~eg~~l~l~p~~~a~~~p~Tt~~~Pl~L~ 86 (94)
T 4efo_A 20 LQQMTAHKIYIHSYNTATIFHELVYKQTKIISSNQELIYEGRRLVLEPGRLAQHFPKTTEENPIFVV 86 (94)
T ss_dssp TTTTEEEEEEEETTCBHHHHHHHHHHHHCCCGGGEEEEETTEEECCCTTCBGGGSCCCBTTBCEEEE
T ss_pred cccceEEEEEeccchHHHHHHHHHHHHhCCCHHHHHHHhCCCccccCCCCccccCCCCCCCCCEEEE
Confidence 346788999999999999999999999999999999999998875 4455555543 334557776
No 165
>3goe_A DNA repair protein RAD60; SUMO-like domain, sumoylation, SUMO, genome stability, DNA damage, DNA recombination, nucleus; HET: DNA; 0.97A {Schizosaccharomyces pombe} PDB: 3rcz_A*
Probab=97.87 E-value=7.9e-05 Score=62.51 Aligned_cols=70 Identities=9% Similarity=0.313 Sum_probs=64.5
Q ss_pred eEEEEEecCCceEEEEcCCCCcHHHHHHHHhhhhCCCCC-CeEEEECCeecCCCccccccCCCCCCEEEEe
Q psy15035 605 LMINIKSNTGNTVCVNLDPASDIRNVKEMIAPKLGLKYE-EVKIIFAGKELEDTTIISECDLGQQSILHAV 674 (816)
Q Consensus 605 M~V~Vk~~~g~t~~v~V~~~~TV~~LK~~I~~~~Gip~~-~qrLif~Gk~L~d~~tL~~~~I~~~stl~lv 674 (816)
+.+.+|......+.+.|.++.+|.+|-..-..+.|||++ .++|.|.|..|+...++++|++++|+.|.++
T Consensus 10 ~~~~~~~~~~~dl~f~I~~~t~v~kLi~ayc~~~~I~~~~~IrllFDGdRLdp~~tp~DlemeD~D~IDvm 80 (82)
T 3goe_A 10 ITLLLRSSKSEDLRLSIPVDFTVKDLIKRYCTEVKISFHERIRLEFEGEWLDPNDQVQSTELEDEDQVSVV 80 (82)
T ss_dssp EEEEEEESSSCCEEEEEETTSBHHHHHHHHHHHHTCCCCTTCEEEETTEECCTTSBGGGSSCCTTCEEEEE
T ss_pred HHHhhhccCCCCeEEEecCCCCHHHHHHHHHHHcCCCcCceEEEEEcCcccCccCChhhhCCcCCceeeee
Confidence 455677776677899999999999999999999999999 9999999999999999999999999999876
No 166
>2jxx_A Nfatc2-interacting protein; nuclear factor of activated T-cells, cytoplasmic 2- interacting protein, ubiquitin like homologue; NMR {Homo sapiens}
Probab=97.53 E-value=0.00027 Score=62.87 Aligned_cols=73 Identities=14% Similarity=0.315 Sum_probs=67.1
Q ss_pred CCceEEEEEecCCc-eEEEEcCCCCcHHHHHHHHhhhhCCCCCCeEEEECCeecCCCccccccCCCCCCEEEEe
Q psy15035 602 DNTLMINIKSNTGN-TVCVNLDPASDIRNVKEMIAPKLGLKYEEVKIIFAGKELEDTTIISECDLGQQSILHAV 674 (816)
Q Consensus 602 ~~~M~V~Vk~~~g~-t~~v~V~~~~TV~~LK~~I~~~~Gip~~~qrLif~Gk~L~d~~tL~~~~I~~~stl~lv 674 (816)
+..+.|.|+..+|. .+.+.|.++++...|...-+++.|+++...+++|.|..|..+.|..++++++|++|.+.
T Consensus 23 ~~~I~LkV~~~dg~~~v~fkIk~~t~l~kLm~aY~~~~g~~~~~vrF~FDG~rI~~~~TP~dLdMEDgD~IDv~ 96 (97)
T 2jxx_A 23 SQQLQLRVQGKEKHQTLEVSLSRDSPLKTLMSHYEEAMGLSGRKLSFFFDGTKLSGRELPADLGMESGDLIEVW 96 (97)
T ss_dssp CSEEEEEEEESSSSCEEEEEEETTSCHHHHHHHHHHHTTCSSSCCEEEETTEECCSCSCHHHHTCCTTEEEEEE
T ss_pred CCeEEEEEEcCCCCEEEEEEECCCChHHHHHHHHHHHHCCCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEe
Confidence 44677888888884 78899999999999999999999999999999999999999999999999999999875
No 167
>3uf8_A Ubiquitin-like protein SMT3, peptidyl-prolyl CIS- isomerase; ssgcid, seattle structural genomics center for in disease; HET: FK5; 1.50A {Burkholderia pseudomallei} PDB: 4ggq_C* 3vaw_A* 3uqa_A* 4g50_A* 4fn2_A* 3uqb_A* 4giv_A* 1euv_B 3v60_A 3v61_A 3v62_A*
Probab=97.36 E-value=0.00038 Score=70.79 Aligned_cols=79 Identities=11% Similarity=0.356 Sum_probs=72.7
Q ss_pred CCCceEEEEEecCCceEEEEcCCCCcHHHHHHHHhhhhCCCCCCeEEEECCeecCCCccccccCCCCCCEEEEe-eCCCC
Q psy15035 601 PDNTLMINIKSNTGNTVCVNLDPASDIRNVKEMIAPKLGLKYEEVKIIFAGKELEDTTIISECDLGQQSILHAV-KSSPE 679 (816)
Q Consensus 601 ~~~~M~V~Vk~~~g~t~~v~V~~~~TV~~LK~~I~~~~Gip~~~qrLif~Gk~L~d~~tL~~~~I~~~stl~lv-r~~gg 679 (816)
.+..+.|.|+. +|..+.+.|..++++..|++..+++.|+|+.++|++|.|+.+.++.|-.++.++++++|.+. ...||
T Consensus 18 ~~~~i~ikv~~-~~~~v~~~i~~~~~l~kl~~~y~~~~g~~~~~~~f~fdG~~i~~~~Tpk~L~~ed~d~I~~~~eq~Gg 96 (209)
T 3uf8_A 18 PETHINLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHREQIGG 96 (209)
T ss_dssp CCSEEEEEEEC-SSCEEEEEEETTSCTHHHHHHHHHHHTCCGGGCEEEETTEECCTTCCTTTTTCCTTEEEEEECSCTTC
T ss_pred CCCcEEEEEEc-CCCEEEEEEeeCCHHHHHHHHHHHhhCCChheEEEEECCEeccCCCChHHhhhcccccchhhcccccc
Confidence 45678889987 78888999999999999999999999999999999999999999999999999999999999 67776
Q ss_pred C
Q psy15035 680 N 680 (816)
Q Consensus 680 ~ 680 (816)
.
T Consensus 97 ~ 97 (209)
T 3uf8_A 97 S 97 (209)
T ss_dssp C
T ss_pred c
Confidence 3
No 168
>2al3_A TUG long isoform; TUG UBL1 insulin, endocytosis/exocytosis complex; NMR {Mus musculus} SCOP: d.15.1.2
Probab=97.21 E-value=0.00079 Score=58.51 Aligned_cols=73 Identities=15% Similarity=0.178 Sum_probs=68.2
Q ss_pred CCceEEEEEecCCceEEEEcCCCCcHHHHHHHHhhhhCCCCCCeEEEECCeecCCCccccccCCCCCCEEEEe
Q psy15035 602 DNTLMINIKSNTGNTVCVNLDPASDIRNVKEMIAPKLGLKYEEVKIIFAGKELEDTTIISECDLGQQSILHAV 674 (816)
Q Consensus 602 ~~~M~V~Vk~~~g~t~~v~V~~~~TV~~LK~~I~~~~Gip~~~qrLif~Gk~L~d~~tL~~~~I~~~stl~lv 674 (816)
+..|.|.|-..+|+..+|.|.|++++.++-+...+++|+.+++..|.|+++.|+-+.++.-.||.+|+.+.|+
T Consensus 7 ~~~m~v~Vl~~n~rr~~VKvtp~t~L~~VL~eaC~K~gl~~~~~~Lkh~~k~lDLSlpfRlsgLpnnAkLELv 79 (90)
T 2al3_A 7 GGGSAVSVLAPNGRRHTVKVTPSTVLLQVLEDTCRRQDFNPSEYDLKFQRTVLDLSLQWRFANLPNNAKLEMV 79 (90)
T ss_dssp ---CCEEEECTTSCEEEECCCTTSBHHHHHHHHHHHTTCCGGGCEEEETTEEESSSCBHHHHCCCSSCEEEEE
T ss_pred CCccEEEEEcCCCcEEEEEECCCCCHHHHHHHHHHHhCCChhhCeEEeCCEeccccceeEecCCCCCCEEEEE
Confidence 3467899999999999999999999999999999999999999999999999999999999999999999999
No 169
>3ix6_A TS, tsase, thymidylate synthase; niaid, ssgcid, seattle structural center for infectious DISE brucellosis, orchitis, epididymitis, mastitis; 2.20A {Brucella melitensis}
Probab=97.17 E-value=5.8e-05 Score=82.03 Aligned_cols=78 Identities=10% Similarity=0.315 Sum_probs=0.4
Q ss_pred CCceEEEEEecCCceEEEEcCCCCcHHHHHHHHhhhhCCCCCCeEEEECCeecCCCccccccCCCCCCEEEEe-eCCCCC
Q psy15035 602 DNTLMINIKSNTGNTVCVNLDPASDIRNVKEMIAPKLGLKYEEVKIIFAGKELEDTTIISECDLGQQSILHAV-KSSPEN 680 (816)
Q Consensus 602 ~~~M~V~Vk~~~g~t~~v~V~~~~TV~~LK~~I~~~~Gip~~~qrLif~Gk~L~d~~tL~~~~I~~~stl~lv-r~~gg~ 680 (816)
+..+.|.|+. +|..+.+.|..++++..|++..+++.|+++.++|++|.|+.+.++.|.+++++++|++|.++ +..||.
T Consensus 19 ~~~I~LKV~~-~g~~v~FkIk~~t~l~kLm~aY~~r~G~~~~~~rFlFdG~rI~~~~TP~~L~MEDgD~Idv~~~Q~g~~ 97 (360)
T 3ix6_A 19 ETHINLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHREQIGGM 97 (360)
T ss_dssp -------------------------------------------------------------------------------C
T ss_pred CCeEEEEEec-CCcEEEEEEecCChHHHHHHHHHHHhCCCcceEEEEECCeECCCCCChHHcCCCccchhhhhhccCchH
Confidence 3457788887 67888999999999999999999999999999999999999999999999999999999999 888884
No 170
>2l76_A Nfatc2-interacting protein; ubiquitin-like domain, structural genomics, PSI-biology, Pro structure initiative; NMR {Homo sapiens}
Probab=97.04 E-value=0.0026 Score=55.77 Aligned_cols=75 Identities=20% Similarity=0.333 Sum_probs=68.3
Q ss_pred CCceEEEEEecCCceEEEEcCCCCcHHHHHHHHhhhhCCCCCCeEEEECCeecCCCccccccCCCCCCEEEEeeCC
Q psy15035 602 DNTLMINIKSNTGNTVCVNLDPASDIRNVKEMIAPKLGLKYEEVKIIFAGKELEDTTIISECDLGQQSILHAVKSS 677 (816)
Q Consensus 602 ~~~M~V~Vk~~~g~t~~v~V~~~~TV~~LK~~I~~~~Gip~~~qrLif~Gk~L~d~~tL~~~~I~~~stl~lvr~~ 677 (816)
+..+.|.|+. +|....+.|..++....|...-+.+.|+++.+.|++|.|..+.++.|-.+++++++++|.++++.
T Consensus 19 ~~~IniKV~~-~g~ev~FkIK~tt~l~KL~~aYc~r~gv~~~sirFlfDG~rI~~~~TP~~L~meD~DiID~~~~~ 93 (95)
T 2l76_A 19 PRLFPLKIRC-RADLVRLPLRMSEPLQSVVDHMATHLGVSPSRILLLFGETELSPTATPRTLKLGVADIIDCVVLT 93 (95)
T ss_dssp CCCEEEEEEC-SSSEEEEEECSSSCTHHHHHHHHHHHTSCGGGEEEEETTEECCTTSCHHHHTCCSSCEEEEEECC
T ss_pred CCeEEEEEEc-CCcEEEEEEecCChHHHHHHHHHhhcCCChhhEEEEECCcCCCCCCCHhHcCCCCCCEEEEEEec
Confidence 3457888885 68888999999999999999999999999999999999999999999999999999999988543
No 171
>2kc2_A Talin-1, F1; FERM, adhesion, cell membrane, cell projection, cytoplasm, cytoskeleton, membrane, phosphoprotein, structural protein; NMR {Mus musculus}
Probab=96.82 E-value=0.00093 Score=62.21 Aligned_cols=69 Identities=13% Similarity=0.205 Sum_probs=58.7
Q ss_pred EEEEEecCCceEEEEcCCCCcHHHHHHHHhhhhCCCCC-------------------------------------CeEEE
Q psy15035 606 MINIKSNTGNTVCVNLDPASDIRNVKEMIAPKLGLKYE-------------------------------------EVKII 648 (816)
Q Consensus 606 ~V~Vk~~~g~t~~v~V~~~~TV~~LK~~I~~~~Gip~~-------------------------------------~qrLi 648 (816)
.+.|+.++|...++.|+.+.||.+++..|+.+.||+.. .++|-
T Consensus 13 ~LkV~llDg~~ktl~VD~S~~V~~lv~~Ic~kigI~n~~ey~L~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~k~kL~ 92 (128)
T 2kc2_A 13 PLKIRMLDGTVKTIMVDDSKTVTDMLMTICARIGITNHDEYSLVRELMEEKKDEGTGTLRKDKTLLRDEKKMEKLKQKLH 92 (128)
T ss_dssp EEEEECTTSCEEEEEEEECSSHHHHHHHHHHHHTCCCCSSEEEEEECCCCCCCCCSSCCSSSSSCSCCSCCSCSSCCSCC
T ss_pred cEEEEcCCCCEEEEEeCCCcCHHHHHHHHHHHhCCCCcccccccccccccccccCchhhccccccccchhHHHHHHHHhc
Confidence 47899999999999999999999999999999999855 33332
Q ss_pred E--CCeecCCCccccccCCCCCCEEEEe
Q psy15035 649 F--AGKELEDTTIISECDLGQQSILHAV 674 (816)
Q Consensus 649 f--~Gk~L~d~~tL~~~~I~~~stl~lv 674 (816)
. .+..|++++||.++||.++++|.|-
T Consensus 93 ~dd~~~WLD~srtL~EQGI~e~~tllLR 120 (128)
T 2kc2_A 93 TDDELNWLDHGRTLREQGVEEHETLLLR 120 (128)
T ss_dssp CSSSEEEECSSSCHHHHTCCTTSEEEEE
T ss_pred ccCCCCcccCCCcHHHcCCCCCCEEEEE
Confidence 1 2366888999999999999998776
No 172
>3kpa_A Probable ubiquitin fold modifier conjugating ENZY; UBL conjugation pathway, ligase, structural genomics, PSI; 2.20A {Leishmania major} SCOP: d.20.1.4
Probab=96.48 E-value=0.00031 Score=66.12 Aligned_cols=63 Identities=16% Similarity=0.151 Sum_probs=51.0
Q ss_pred hhHHHHHHHhhhcCCCCCcceeccccCCCCcccceEEEEeCCCCCCCCCc----------chhhhhchhhhhhhhhhhhe
Q psy15035 526 NFRLLEELEHGQRGVGDGTISWGLENDDDMTLTHWTGMIIGPPRTSTTGH----------IMDTIIGYIMSVLNEILHLF 595 (816)
Q Consensus 526 ~~~l~~el~~~~~~~~~~~~s~gl~~~~d~~l~~w~~~i~GP~~t~~e~~----------~~~l~i~f~~~yp~~~p~~~ 595 (816)
..||.+|+..+-+= ++.- ..+|. .|-..+-||.+|+|+|+ .|.+.|+||.+||..||++
T Consensus 36 ~~RlkeEy~alI~y-----v~~n--K~~d~---dWf~~~sn~~GT~W~G~cw~~~~~~kyeFkLefdiP~tYP~tPPeI- 104 (168)
T 3kpa_A 36 TARLKEEYASLITY-----VEHN--KASDS---HWFHLESNPQGTRWYGTCWTYYKNEKYEFEMNFDIPVTYPQAPPEI- 104 (168)
T ss_dssp HHHHHHHHHHHHHH-----HHHH--HHTTC---CCEEEEECTTSCEEEEEEEEEETTEEEEEEEEEECCTTTTTSCCCC-
T ss_pred HHHHHHHHHHHHHH-----HHhc--ccccC---CeeeecCCCCCCcccCccceeeccceeEEEEEEeCCccCCCCCCEe-
Confidence 46999999988643 3321 23443 69999999999999999 9999999999999999999
Q ss_pred eccC
Q psy15035 596 WISR 599 (816)
Q Consensus 596 ~~~~ 599 (816)
.|..
T Consensus 105 ~Fp~ 108 (168)
T 3kpa_A 105 ALPE 108 (168)
T ss_dssp BCGG
T ss_pred eccc
Confidence 4765
No 173
>4da1_A Protein phosphatase 1K, mitochondrial; metal-ION-assisted catalysis, dehydrogenase phosphatase, hydrolase; 2.38A {Homo sapiens} PDB: 3qht_A 1l2n_A
Probab=96.41 E-value=0.00051 Score=76.37 Aligned_cols=80 Identities=11% Similarity=0.326 Sum_probs=0.0
Q ss_pred CCceEEEEEecCCceEEEEcCCCCcHHHHHHHHhhhhCCCCCCeEEEECCeecCCCccccccCCCCCCEEEEe-eCCCCC
Q psy15035 602 DNTLMINIKSNTGNTVCVNLDPASDIRNVKEMIAPKLGLKYEEVKIIFAGKELEDTTIISECDLGQQSILHAV-KSSPEN 680 (816)
Q Consensus 602 ~~~M~V~Vk~~~g~t~~v~V~~~~TV~~LK~~I~~~~Gip~~~qrLif~Gk~L~d~~tL~~~~I~~~stl~lv-r~~gg~ 680 (816)
+..+.|.|+. +|..+.+.|..+++...|++..+++.|+++.+++++|.|+.+.++.|..++++++|++|.++ ...||.
T Consensus 28 ~~~i~lkv~~-~~~~~~~~i~~~~~~~~l~~~y~~~~g~~~~~~~f~f~G~~i~~~~Tp~~l~med~d~i~~~~~q~gg~ 106 (389)
T 4da1_A 28 ETHINLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQAPEDLDMEDNDIIEAHREQIGGE 106 (389)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCcEEEEEec-CCcEEEEEECCCChHHHHHHHHHHHhCCCcceEEEEECCEEcCCCCCHHHcCCCCCCEeeeeecccccc
Confidence 3456677777 77888899999999999999999999999999999999999999999999999999999999 677774
Q ss_pred Cc
Q psy15035 681 NK 682 (816)
Q Consensus 681 ~~ 682 (816)
+.
T Consensus 107 n~ 108 (389)
T 4da1_A 107 NL 108 (389)
T ss_dssp --
T ss_pred cc
Confidence 33
No 174
>3qx1_A FAS-associated factor 1; UBX, protein binding, P97 binding; 1.60A {Homo sapiens} PDB: 3qwz_B* 3qc8_B 3qca_A 3qq8_B 3r3m_B 1h8c_A
Probab=96.29 E-value=0.012 Score=50.65 Aligned_cols=71 Identities=17% Similarity=0.317 Sum_probs=61.9
Q ss_pred CceEEEEEecCCceEEEEcCCCCcHHHHHHHHhhhhCCCCCCeEEE--ECCeec---CCCccccccCCCCCCEEEEe
Q psy15035 603 NTLMINIKSNTGNTVCVNLDPASDIRNVKEMIAPKLGLKYEEVKII--FAGKEL---EDTTIISECDLGQQSILHAV 674 (816)
Q Consensus 603 ~~M~V~Vk~~~g~t~~v~V~~~~TV~~LK~~I~~~~Gip~~~qrLi--f~Gk~L---~d~~tL~~~~I~~~stl~lv 674 (816)
....|.||..+|..+.-....++||.+|..-|.. .|.++..+.|+ |-.+.| +.+.||.++||.++++|+|-
T Consensus 6 ~~~~i~iRlpdG~r~~~~F~~~~tl~~v~~fv~~-~~~~~~~f~L~t~fPrk~l~~~d~~~TL~e~gL~p~a~L~ve 81 (84)
T 3qx1_A 6 PVSKLRIRTPSGEFLERRFLASNKLQIVFDFVAS-KGFPWDEYKLLSTFPRRDVTQLDPNKSLLEVKLFPQETLFLE 81 (84)
T ss_dssp CEEEEEEECTTSCEEEEEEETTSBHHHHHHHHHH-TTCCTTTEEEECSSSCCBGGGSCTTSBTTTTTCCSEEEEEEE
T ss_pred CeEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHH-cCCCCCCeEEEeCCCCCCCcCCCCCCCHHHCCCCCCCEEEEE
Confidence 4567999999999888889999999999999988 67888889998 667888 35789999999999999875
No 175
>2bps_A YUKD protein; ubiquitin-like protein, ubiquitin; 2.7A {Bacillus subtilis}
Probab=96.28 E-value=0.006 Score=52.20 Aligned_cols=69 Identities=13% Similarity=0.241 Sum_probs=59.4
Q ss_pred eEEEEEe--cCCceEEEEcCCCCcHHHHHHHHhhhhCCCC-----CCeEEEECCeecCCCccccccCCCCCCEEEE
Q psy15035 605 LMINIKS--NTGNTVCVNLDPASDIRNVKEMIAPKLGLKY-----EEVKIIFAGKELEDTTIISECDLGQQSILHA 673 (816)
Q Consensus 605 M~V~Vk~--~~g~t~~v~V~~~~TV~~LK~~I~~~~Gip~-----~~qrLif~Gk~L~d~~tL~~~~I~~~stl~l 673 (816)
+.|++.. -.|+++.+.++...||..|++.+.+..+++. .+.|+.-.|..|.++.+|++|+|++|+.+.+
T Consensus 5 I~ITidl~~y~~~~~DLRIP~~~tvK~Li~~l~ea~~l~~~~~~~~~irv~NK~~~L~~~~~L~d~~ItnGD~Lei 80 (81)
T 2bps_A 5 IDITIDLKHYNGSVFDLRLSDYHPVKKVIDIAWQAQSVSMPPREGHWIRVVNKDKVFSGECKLSDCGITNGDRLEI 80 (81)
T ss_dssp EEEEEECTTTTCCEEEEEEETTSBTTHHHHHHHHHSCCCSCCCTTCEEEEGGGTEEEETTSBTGGGTCCTTCEEEE
T ss_pred EEEEEEeeccCCceEEEECCCchhHHHHHHHHHHHhCCCcCCCCCCEEEEecCCEEEcCCCEEeeCCcCCCCEEEE
Confidence 4566664 3789999999999999999999999998754 3467788999999999999999999999875
No 176
>2dzk_A UBX domain-containing protein 2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} PDB: 2kxj_A
Probab=95.58 E-value=0.076 Score=48.05 Aligned_cols=73 Identities=11% Similarity=0.262 Sum_probs=64.3
Q ss_pred CCceEEEEEecCCceEEEEcCCCCcHHHHHHHHhhhhCCCCCCeEEE--ECCeecC---CCccccccCCCCCCEEEEe
Q psy15035 602 DNTLMINIKSNTGNTVCVNLDPASDIRNVKEMIAPKLGLKYEEVKII--FAGKELE---DTTIISECDLGQQSILHAV 674 (816)
Q Consensus 602 ~~~M~V~Vk~~~g~t~~v~V~~~~TV~~LK~~I~~~~Gip~~~qrLi--f~Gk~L~---d~~tL~~~~I~~~stl~lv 674 (816)
.....|.||..+|..+.-....++||.+|..-|....+.+...+.|+ |-.|.+. .+.||.+.|+.+..+|++.
T Consensus 11 ~~~t~IqIRlpdG~rl~~rF~~~~tl~~v~~fV~~~~~~~~~~f~L~t~fPrk~l~~~d~~~TL~elgL~psa~L~v~ 88 (109)
T 2dzk_A 11 STIARIQFRLPDGSSFTNQFPSDAPLEEARQFAAQTVGNTYGNFSLATMFPRREFTREDYKRRLLDLELAPSASVVLL 88 (109)
T ss_dssp SCCEEEEEECSSSCEEEEEECTTSBHHHHHHHHHHHHTTSSCSCEEECSSSCCBCCTTTTTSBTGGGTCSSEEEEEEE
T ss_pred CCcEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHhccCCCCCceEEEcCCCCcCCcccccCCCHHHCCCCCceEEEEE
Confidence 34678999999999999999999999999999999988887888887 6778886 3689999999999988888
No 177
>1wj4_A KIAA0794 protein; UBX domain, beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.2
Probab=94.84 E-value=0.058 Score=50.00 Aligned_cols=73 Identities=14% Similarity=0.246 Sum_probs=63.5
Q ss_pred CCceEEEEEecCCceEEEEcCCCCcHHHHHHHHhhhhCCCCCCeEEE--ECCeec--C-CCccccccCCCCCCEEEEee
Q psy15035 602 DNTLMINIKSNTGNTVCVNLDPASDIRNVKEMIAPKLGLKYEEVKII--FAGKEL--E-DTTIISECDLGQQSILHAVK 675 (816)
Q Consensus 602 ~~~M~V~Vk~~~g~t~~v~V~~~~TV~~LK~~I~~~~Gip~~~qrLi--f~Gk~L--~-d~~tL~~~~I~~~stl~lvr 675 (816)
.....|.||..+|..+.-....++||.+|..-|... |.++..+.|+ |-.|.| . .+.||.+.||.+..+|+|.+
T Consensus 41 ~~~t~IqIRlPdG~rl~~rF~~~~tl~~V~~fV~~~-~~~~~~F~L~t~fPrk~l~~~d~~~TL~e~gL~psa~Liv~~ 118 (124)
T 1wj4_A 41 GPKAQLMLRYPDGKREQITLPEQAKLLALVKHVQSK-GYPNERFELLTNFPRRKLSHLDYDITLQEAGLCPQETVFVQE 118 (124)
T ss_dssp SCEEEEEEECTTSCEEEEEEETTSCHHHHHHHHHHH-HCCTTTEEEECSSSCCEETSSCSSSCTTTTTCCSSBCCEEEE
T ss_pred CCcEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHhc-CCCCCCeEEecCCCCcCCccCCCCCCHHHCCCCCceEEEEEE
Confidence 345789999999999999999999999999999887 8888888887 668888 3 47899999999999888883
No 178
>2l32_A Small archaeal modifier protein 2; protein BIN; NMR {Haloferax volcanii}
Probab=93.43 E-value=0.2 Score=41.94 Aligned_cols=65 Identities=11% Similarity=0.193 Sum_probs=51.7
Q ss_pred eEEEEEecCCceEEEEcCCCCcHHHHHHHHhhhhCCCCCCeEEEECCeecCCCccccccCCCCCCEEEEee-CCCC
Q psy15035 605 LMINIKSNTGNTVCVNLDPASDIRNVKEMIAPKLGLKYEEVKIIFAGKELEDTTIISECDLGQQSILHAVK-SSPE 679 (816)
Q Consensus 605 M~V~Vk~~~g~t~~v~V~~~~TV~~LK~~I~~~~Gip~~~qrLif~Gk~L~d~~tL~~~~I~~~stl~lvr-~~gg 679 (816)
|+|+||.++.....+++++..||++|-+. .|+|++..-+.-+|+.+..+. +.+|++|.+++ ..||
T Consensus 1 M~v~Vkl~g~~~~~~ev~~g~Tv~dLL~~----Lgl~~~~VvV~vNG~~v~~d~------~l~GD~VeIv~~V~G~ 66 (74)
T 2l32_A 1 MNVTVEVVGEETSEVAVDDDGTYADLVRA----VDLSPHEVTVLVDGRPVPEDQ------SVEVDRVKVLRLIKGG 66 (74)
T ss_dssp CEEEEECSSSSEEEEECSTTCSHHHHHHT----TCCCSSCCCEECCCCCCCTTS------SSCCCCEEECSSCSCC
T ss_pred CEEEEEEeCccceeEEcCCCCcHHHHHHH----cCCCcceEEEEECCEECCHHH------CCCCCEEEEEEeeccc
Confidence 88999998555567899999999998764 899999997788999887655 33599999994 4444
No 179
>2cr5_A Reproduction 8; UBX domain, D0H8S2298E protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.2
Probab=93.03 E-value=0.19 Score=45.31 Aligned_cols=71 Identities=8% Similarity=0.210 Sum_probs=60.8
Q ss_pred CceEEEEEecCCceEEEEcCCCCcHHHHHHHHhhhhCCCCCCeEEE--ECCeecC--CCccccccCCCCCCEEEEe
Q psy15035 603 NTLMINIKSNTGNTVCVNLDPASDIRNVKEMIAPKLGLKYEEVKII--FAGKELE--DTTIISECDLGQQSILHAV 674 (816)
Q Consensus 603 ~~M~V~Vk~~~g~t~~v~V~~~~TV~~LK~~I~~~~Gip~~~qrLi--f~Gk~L~--d~~tL~~~~I~~~stl~lv 674 (816)
....|.||..+|+.+.-....++||.+|..-|... +..+..+.|+ |-.|.|. .+.||.+.||.+..+|+|.
T Consensus 22 ~~~~IqiRlpdG~r~~rrF~~~~tl~~v~~fv~~~-~~~~~~f~L~t~fPrk~l~~d~~~TL~e~gL~p~a~L~Ve 96 (109)
T 2cr5_A 22 EVVTVALRCPNGRVLRRRFFKSWNSQVLLDWMMKV-GYHKSLYRLSTSFPRRALEVEGGSSLEDIGITVDTVLNVE 96 (109)
T ss_dssp SEEEEEEECTTSCEEEEEEESSSBTHHHHHHHHHH-TCCTTTEEEECSSSCCBCCCCSSCBHHHHTCSSCEEEEEE
T ss_pred CcEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHhc-CCCCCCeEEEeCCCCcCCCCCCCCCHHHcCCCCCeEEEEE
Confidence 46789999999998888899999999999999964 6666788887 6678885 4789999999999988877
No 180
>1ryj_A Unknown; beta/alpha protein, structural genomics, protein structure initiative, OCSP, NESG, PSI; NMR {Methanothermococcusthermolithotrophicus} SCOP: d.15.3.2
Probab=92.56 E-value=1.1 Score=36.82 Aligned_cols=67 Identities=10% Similarity=0.141 Sum_probs=50.9
Q ss_pred CceEEEEEecCCceEEEEcCCCCcHHHHHHHHhhhhCCCCCCeEEEECCeecCCCccccccCCCCCCEEEEe-eCCCC
Q psy15035 603 NTLMINIKSNTGNTVCVNLDPASDIRNVKEMIAPKLGLKYEEVKIIFAGKELEDTTIISECDLGQQSILHAV-KSSPE 679 (816)
Q Consensus 603 ~~M~V~Vk~~~g~t~~v~V~~~~TV~~LK~~I~~~~Gip~~~qrLif~Gk~L~d~~tL~~~~I~~~stl~lv-r~~gg 679 (816)
..|+|+|.... ....++++...||.+|.+.+ ++++....+..+|.....+. -|++|+.|-++ ...||
T Consensus 3 ~~m~i~vNg~~-~~~~~~~~~~~tv~~Ll~~l----~~~~~~v~vavN~~~v~~~~-----~L~~gD~V~ii~~V~GG 70 (70)
T 1ryj_A 3 IGMKFTVITDD-GKKILESGAPRRIKDVLGEL----EIPIETVVVKKNGQIVIDEE-----EIFDGDIIEVIRVIYGG 70 (70)
T ss_dssp CCEEEEEEETT-EEEEEEESSCCBHHHHHHHT----TCCTTTEEEEETTEECCTTS-----BCCTTCEEEEEECTTCC
T ss_pred eeEEEEEeCcc-CceeEECCCCCcHHHHHHHh----CCCCCCEEEEECCEECCCcc-----cCCCCCEEEEEeccccC
Confidence 45888886632 33467888889999999875 67788878889999887655 57889999999 44444
No 181
>1s3s_G P47 protein; AAA ATPase, protein-protein complex, UBX domain, protein binding; HET: ADP; 2.90A {Rattus norvegicus} SCOP: d.15.1.2 PDB: 1i42_A 1jru_A
Probab=92.49 E-value=0.23 Score=46.14 Aligned_cols=71 Identities=20% Similarity=0.356 Sum_probs=58.9
Q ss_pred CCceEEEEEecCCceEEEEcCCCCcHHHHHHHHhhh-hCCCCCCeEEE--ECCeecCC-CccccccCCCCCCEEE
Q psy15035 602 DNTLMINIKSNTGNTVCVNLDPASDIRNVKEMIAPK-LGLKYEEVKII--FAGKELED-TTIISECDLGQQSILH 672 (816)
Q Consensus 602 ~~~M~V~Vk~~~g~t~~v~V~~~~TV~~LK~~I~~~-~Gip~~~qrLi--f~Gk~L~d-~~tL~~~~I~~~stl~ 672 (816)
.....|.||..+|..+.-....++||.+|..-|... .+.+...+.|+ |-.+.|.| +.||.+.|+.+..+|+
T Consensus 50 ~~~t~IqIRlpdG~rl~~rF~~~~tl~~v~~fV~~~~~~~~~~~f~L~t~fPrk~l~d~~~TL~eagL~psavl~ 124 (127)
T 1s3s_G 50 EPTTNIQIRLADGGRLVQKFNHSHRISDIRLFIVDARPAMAATSFVLMTTFPNKELADENQTLKEANLLNAVIVQ 124 (127)
T ss_dssp SCCCCEEEEETTTTEEEEECCSSCBHHHHHHHHHHHCSGGGTSCEEEEETTTTEECCSTTCBHHHHTCSSCEEEE
T ss_pred CCcEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHHhCcCCCCCCeEEecCCCCCCCCCCCCcHHHCCCcCceEEE
Confidence 346789999999999999999999999999999886 35666778887 66888864 6899999999865543
No 182
>4e71_A Plexin-B2, MM1; transmembrane, signaling, RBD, structural genomics consortium, SGC, signaling protein; 2.26A {Homo sapiens}
Probab=91.72 E-value=0.62 Score=42.02 Aligned_cols=71 Identities=17% Similarity=0.232 Sum_probs=50.9
Q ss_pred ceEEEEEec--CCceEEEEcCCCCcHHHHHHHHhhhh--CCC------CCCeEEEE----CCeecCCC------------
Q psy15035 604 TLMINIKSN--TGNTVCVNLDPASDIRNVKEMIAPKL--GLK------YEEVKIIF----AGKELEDT------------ 657 (816)
Q Consensus 604 ~M~V~Vk~~--~g~t~~v~V~~~~TV~~LK~~I~~~~--Gip------~~~qrLif----~Gk~L~d~------------ 657 (816)
+|.++|-.. .+..+++.|-.-|||.++|++|-... |+| ++++.|-| .|+.|.|.
T Consensus 11 ~ltl~v~~~~~~~~~i~vkVLdCDTItQvKeKiLd~vyk~~pyS~rP~~~~~dLEwr~g~~~~iL~D~D~ts~~~~~wkr 90 (111)
T 4e71_A 11 PLTVSVIVQDEGVDAIPVKVLNCDTISQVKEKIIDQVYRGQPCSCWPRPDSVVLEWRPGSTAQILSDLDLTSQREGRWKR 90 (111)
T ss_dssp EEEEEEEETTSCCCCEEEEEETTCBHHHHHHHHHHHHTC---------CCSEEEEEC--CCCEECCSSCTTSCC---CCC
T ss_pred EEEEEEEecCCCCCceeeeeeccCcHHHHHHHHHHHHHcCCccccCCCCCceeeEEecCCCCccccccCccceecCcceE
Confidence 455555443 34568899999999999999998774 444 34566765 34566552
Q ss_pred -ccccccCCCCCCEEEEe
Q psy15035 658 -TIISECDLGQQSILHAV 674 (816)
Q Consensus 658 -~tL~~~~I~~~stl~lv 674 (816)
.||+.|+|.+|+++-|+
T Consensus 91 LNTL~HY~V~dgatl~l~ 108 (111)
T 4e71_A 91 VNTLMHYNVRDGATLILS 108 (111)
T ss_dssp CCBHHHHTCCTTCEEEEE
T ss_pred ecchhhcCCCCCCEEEEE
Confidence 37999999999999988
No 183
>2daj_A KIAA0977 protein, COBL-like 1; ubiquitin-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=88.62 E-value=0.64 Score=39.61 Aligned_cols=71 Identities=15% Similarity=0.252 Sum_probs=62.0
Q ss_pred CCCceEEEEEecCCceEEEEcCCCCcHHHHHHHHhhhhCCCCCCeEEE---ECCeecCCCccccccCCCCCCEEEEe
Q psy15035 601 PDNTLMINIKSNTGNTVCVNLDPASDIRNVKEMIAPKLGLKYEEVKII---FAGKELEDTTIISECDLGQQSILHAV 674 (816)
Q Consensus 601 ~~~~M~V~Vk~~~g~t~~v~V~~~~TV~~LK~~I~~~~Gip~~~qrLi---f~Gk~L~d~~tL~~~~I~~~stl~lv 674 (816)
+..+..+.|.....+...+.|+|..++.+|-..|.++..+.|+...|. -.+..|+-+.+|.||||.+ +.++
T Consensus 7 PE~TvRLvVNy~~tQKtVvRVSP~vpL~ellp~IC~Kcefdp~~~~Ll~d~~~~e~LdLskSLndlgirE---Lya~ 80 (91)
T 2daj_A 7 GEKTVRVVINFKKTQKTIVRVSPHASLQELAPIICSKCEFDPLHTLLLKDYQSQEPLDLTKSLNDLGLRE---LYAM 80 (91)
T ss_dssp CCSCEEEEEEETTTEEEEEEECSSSCTTTHHHHHHHHTTCCTTSEEEESCSSCCCBCCTTSCHHHHTCSE---EEEE
T ss_pred CccEEEEEEeecCcceeEEEeCCCCcHHHHHHHHhhcccCChhhEEEecCCCCCcccchhcchhhhhhhh---hhee
Confidence 567888899888778888999999999999999999999999988886 3566788999999999987 6666
No 184
>3r3q_A Suppressor protein STP22 of temperature-sensitive factor receptor and arginine permease...; endosomal sorting, ESCRT-I; 1.45A {Saccharomyces cerevisiae} SCOP: d.20.1.2 PDB: 3r42_A 1uzx_A*
Probab=88.07 E-value=0.22 Score=48.15 Aligned_cols=82 Identities=17% Similarity=0.126 Sum_probs=55.3
Q ss_pred cccceEEEEeCCCCCCCCCcc---hhhhhchhhhhhhhhhhheeccC-C--CC-CceEEE----EEecCCceEEEEc---
Q psy15035 556 TLTHWTGMIIGPPRTSTTGHI---MDTIIGYIMSVLNEILHLFWISR-K--PD-NTLMIN----IKSNTGNTVCVNL--- 621 (816)
Q Consensus 556 ~l~~w~~~i~GP~~t~~e~~~---~~l~i~f~~~yp~~~p~~~~~~~-~--~~-~~M~V~----Vk~~~g~t~~v~V--- 621 (816)
.|..|.|+|- ++|+|+. |.+.|-||++||.+||.+| +.. . |. .+|.|+ | ..+|+. .+.+
T Consensus 63 ~Ll~l~Gtip----v~y~g~~~Yn~pi~IwlP~~YP~~PP~v~-v~p~t~~m~~~~~~I~~hpnV-D~~G~I-~lpyL~~ 135 (162)
T 3r3q_A 63 LLLSIYGTIS----TGEDGSSPHSIPVIMWVPSMYPVKPPFIS-INLENFDMNTISSSLPIQEYI-DSNGWI-ALPILHA 135 (162)
T ss_dssp EEEEEEEEEE----CSCCTTSCCEEEEEEECCTTTTTSCCEEE-ECGGGCCTTTSCTTSTHHHHB-CTTSBB-CCGGGGS
T ss_pred eEEEEECccC----ccccCcccccccEEEEeCcccCCCCCEEE-EECCCccccccccccCCCCCC-CCCCcE-eCccccc
Confidence 5667777774 8999988 6799999999999999998 543 1 11 122233 2 235653 3332
Q ss_pred -CC-CCcHHHHHHHHhhhhCCCCCC
Q psy15035 622 -DP-ASDIRNVKEMIAPKLGLKYEE 644 (816)
Q Consensus 622 -~~-~~TV~~LK~~I~~~~Gip~~~ 644 (816)
.+ ..++.++-+.+....+-|.-+
T Consensus 136 W~p~~s~L~~ll~~l~~lf~ep~~d 160 (162)
T 3r3q_A 136 WDPAAMNLIMVVQELMSLLHEPPQD 160 (162)
T ss_dssp CCGGGCCHHHHHHHHHHTTSCCCCC
T ss_pred CCCCcCcHHHHHHHHHHHhcCCCCC
Confidence 23 468888888888888876543
No 185
>2r2o_A Plexin-B1; effector domain, structural genomics, structural GEN consortium, SGC, glycoprotein, membrane, phosphorylation, R secreted, transmembrane; 2.00A {Homo sapiens} PDB: 2rex_A* 2jph_A
Probab=87.94 E-value=1.6 Score=40.79 Aligned_cols=60 Identities=20% Similarity=0.310 Sum_probs=46.8
Q ss_pred ceEEEEcCCCCcHHHHHHHHhhhh--CCCC------CCeEEEE----CCe-ecCCC-------------ccccccCCCCC
Q psy15035 615 NTVCVNLDPASDIRNVKEMIAPKL--GLKY------EEVKIIF----AGK-ELEDT-------------TIISECDLGQQ 668 (816)
Q Consensus 615 ~t~~v~V~~~~TV~~LK~~I~~~~--Gip~------~~qrLif----~Gk-~L~d~-------------~tL~~~~I~~~ 668 (816)
..++|.|-.-|||.++|++|-... |+|- ++.-|-+ +|+ .|.|. .||+.|+|.+|
T Consensus 41 ~~i~VkVLdCDTItQvKeKiLDavYk~~PySqRP~~~d~dLEwr~g~~g~liL~D~D~tS~~~~~wkrLNTL~HY~V~Dg 120 (138)
T 2r2o_A 41 QGVPVKVLDCDTISQAKEKMLDQLYKGVPLTQRPDPRTLDVEWRSGVAGHLILSDEDVTSEVQGLWRRLNTLQHYKVPDG 120 (138)
T ss_dssp CCEEEEEETTCBHHHHHHHHHHHHTTTSCGGGCCCGGGEEEEEECSSSCEEEECSSSTTCCEETTEEECCBHHHHTCCTT
T ss_pred CceeEEEeccccHHHHHHHHHHHHHcCCccccCCCccceeEEEecCCcCceEeeccCCcccccCCceeecchhccCCCCC
Confidence 568999999999999999999885 5543 4455655 344 36543 28999999999
Q ss_pred CEEEEe
Q psy15035 669 SILHAV 674 (816)
Q Consensus 669 stl~lv 674 (816)
++|-|+
T Consensus 121 a~l~l~ 126 (138)
T 2r2o_A 121 ATVALV 126 (138)
T ss_dssp CEEEEE
T ss_pred CEEEEE
Confidence 999999
No 186
>3h6n_A Plexin-D1; structural genomics consortium, SGC, membrane, transmembrane, receptor, alternative splicing, cell membrane, glycoprotein, polymorphism; 2.00A {Homo sapiens}
Probab=87.89 E-value=2.1 Score=39.44 Aligned_cols=62 Identities=18% Similarity=0.237 Sum_probs=48.0
Q ss_pred CCceEEEEcCCCCcHHHHHHHHhhhh--CCC------CCCeEEEE-C---Cee-cCCC-------------ccccccCCC
Q psy15035 613 TGNTVCVNLDPASDIRNVKEMIAPKL--GLK------YEEVKIIF-A---GKE-LEDT-------------TIISECDLG 666 (816)
Q Consensus 613 ~g~t~~v~V~~~~TV~~LK~~I~~~~--Gip------~~~qrLif-~---Gk~-L~d~-------------~tL~~~~I~ 666 (816)
++..+++.|-.-|||.++|++|-... |+| ++++.|-| . |+. |.|. .||+.|+|.
T Consensus 15 ~~~~i~VkVLdCDTItQvKeKiLd~vyk~~p~S~rP~~~~~dLEwr~g~~~~~iL~D~D~ts~~~~~~krLNTL~HY~V~ 94 (127)
T 3h6n_A 15 GMDSLSVRAMDTDTLTQVKEKILEAFCKNVPYSQWPRAEDVDLEWFASSTQSYILRDLDDTSVVEDGRKKLNTLAHYKIP 94 (127)
T ss_dssp CCCCEEEEEETTSBHHHHHHHHHHHHSTTSCGGGSCCGGGEEEEEECSSSCEEECCSSSTTSCEETTEECCCBTTTTTCC
T ss_pred CCCceeeeeeccCchhhhhHHHHHHHhccCCcccCCCCcccceEEecCCCCceEeecCCCcceecCceeEeccccccCCC
Confidence 45668999999999999999998774 444 46677766 3 333 6542 379999999
Q ss_pred CCCEEEEe
Q psy15035 667 QQSILHAV 674 (816)
Q Consensus 667 ~~stl~lv 674 (816)
+|++|-|+
T Consensus 95 dgatv~l~ 102 (127)
T 3h6n_A 95 EGASLAMS 102 (127)
T ss_dssp TTCEEEEE
T ss_pred CCCEEEEE
Confidence 99999998
No 187
>3jyu_A Ubiquitin carboxyl-terminal hydrolase; domain in ubiquitin-specific peptidases (DUSP), proto- oncogene, ubiquitin-fold, UBL, protease, thioesterase; HET: 1PS; 2.37A {Mus musculus}
Probab=87.32 E-value=1.3 Score=45.26 Aligned_cols=64 Identities=14% Similarity=0.204 Sum_probs=52.5
Q ss_pred eEEEEcCCCCcHHHHHHHHhhhhCCCCC-CeEEEE-C----CeecCC-CccccccCCCCCCEEEEe-eCCCC
Q psy15035 616 TVCVNLDPASDIRNVKEMIAPKLGLKYE-EVKIIF-A----GKELED-TTIISECDLGQQSILHAV-KSSPE 679 (816)
Q Consensus 616 t~~v~V~~~~TV~~LK~~I~~~~Gip~~-~qrLif-~----Gk~L~d-~~tL~~~~I~~~stl~lv-r~~gg 679 (816)
.+++.++..+||.+|++.+....+||++ +.||.. . ...|.| +.||.+++|.++..|.+- |...|
T Consensus 153 ~~~~~~Sk~~ti~~l~~~~~~~~~i~~~~~~RLW~~~~~~~~~~L~~~~~tl~d~~L~~~Q~illE~r~~dg 224 (231)
T 3jyu_A 153 VLSCHFSKADTIATIEKEMRKLFNIPAERETRLWNKYMSNTYEQLSKLDNTIQDAGLYQGQVLVIEPQNEDG 224 (231)
T ss_dssp EEEEEECTTCBHHHHHHHHHHHTTCCTTSCEEEEECSSSSSCEECCCTTSBTTTTTCCTTEEEEEEECCTTS
T ss_pred eEEEEecccCcHHHHHHHHHHHhCCCCCCeEEEEEecCCCCHhhhcCCCCCHHHhCCCCCCEEEEEEecCCC
Confidence 3567789999999999999999999997 689964 3 244664 689999999999988888 76655
No 188
>1vjk_A Molybdopterin converting factor, subunit 1; structural genomics, PSI, protein structure INI southeast collaboratory for structural genomics; 1.51A {Pyrococcus furiosus} SCOP: d.15.3.1
Probab=87.17 E-value=3.7 Score=35.83 Aligned_cols=72 Identities=15% Similarity=0.231 Sum_probs=50.3
Q ss_pred CceEEEEEec------CC-ceEEEEcCCCCcHHHHHHHHhhhhC-----------CCCCCeEEEECCeecCCCccccccC
Q psy15035 603 NTLMINIKSN------TG-NTVCVNLDPASDIRNVKEMIAPKLG-----------LKYEEVKIIFAGKELEDTTIISECD 664 (816)
Q Consensus 603 ~~M~V~Vk~~------~g-~t~~v~V~~~~TV~~LK~~I~~~~G-----------ip~~~qrLif~Gk~L~d~~tL~~~~ 664 (816)
.+|+|.||.- .| ....++++...||.+|.+.+..+.. -......+.-+|+.... +.-
T Consensus 8 ~~~~v~V~~FA~lre~~g~~~~~~e~~~~~Tv~~Ll~~L~~~~p~l~~~l~~~~g~~~~~v~v~VNg~~v~~-----~~~ 82 (98)
T 1vjk_A 8 GSVKVKVKYFARFRQLAGVDEEEIELPEGARVRDLIEEIKKRHEKFKEEVFGEGYDEDADVNIAVNGRYVSW-----DEE 82 (98)
T ss_dssp -CEEEEEEECTHHHHHHSSSEEEEEECTTCBHHHHHHHHHHHCGGGGGSCBCSSSCTTSSBEEEETTBCCCT-----TCB
T ss_pred CcEEEEEEEhHHHHHHhCCCeEEEECCCCCCHHHHHHHHHhHChhHHHHhhccccccCCcEEEEECCEECCC-----CCC
Confidence 5788999875 24 4677888888999999999887641 11234567788887753 566
Q ss_pred CCCCCEEEEe-eCCCC
Q psy15035 665 LGQQSILHAV-KSSPE 679 (816)
Q Consensus 665 I~~~stl~lv-r~~gg 679 (816)
|++|+.|.++ ...||
T Consensus 83 L~dGDeV~i~ppv~GG 98 (98)
T 1vjk_A 83 LKDGDVVGVFPPVSGG 98 (98)
T ss_dssp CCTTCEEEEESCC---
T ss_pred CCCCCEEEEECCCCCC
Confidence 8889999999 55554
No 189
>1oey_A P67-PHOX, neutrophil cytosol factor 2; immune system, PB1 heterodimer/complex, NADPH oxidase, PB1 D heterodimerization; 2.0A {Homo sapiens} SCOP: d.15.2.2
Probab=86.30 E-value=1.2 Score=38.12 Aligned_cols=48 Identities=21% Similarity=0.412 Sum_probs=42.6
Q ss_pred CceEEEEEecCCceEEEEcCCCCcHHHHHHHHhhhhCCCCCCeEEEECCe
Q psy15035 603 NTLMINIKSNTGNTVCVNLDPASDIRNVKEMIAPKLGLKYEEVKIIFAGK 652 (816)
Q Consensus 603 ~~M~V~Vk~~~g~t~~v~V~~~~TV~~LK~~I~~~~Gip~~~qrLif~Gk 652 (816)
..|.|.|... -|+.+.|++..+..+|..+|.++.++|++...|.|...
T Consensus 4 ~~~~VKV~~~--~tvairvp~~~~y~~L~~~l~~kL~l~~~~~~LsYk~~ 51 (83)
T 1oey_A 4 MAYTLKVHYK--YTVVMKTQPGLPYSQVRDMVSKKLELRLEHTKLSYRPR 51 (83)
T ss_dssp SCEEEEEESS--SEEEEEECTTCCHHHHHHHHHHHTTCCGGGCCEEECCT
T ss_pred CcEEEEEEEE--EEEEEECCCCCCHHHHHHHHHHHhCCCcceeEEEeeCC
Confidence 3577888775 79999999999999999999999999999999998764
No 190
>3obq_A Tumor susceptibility gene 101 protein; protein transprot, ubiquitin binding, protein transport; 1.40A {Homo sapiens} SCOP: d.20.1.2 PDB: 3obs_A 3obu_A 3obx_A 3p9g_A* 3p9h_A* 2f0r_A 1kpp_A 1kpq_A 1m4p_A 1m4q_A 1s1q_A
Probab=86.13 E-value=0.4 Score=45.58 Aligned_cols=79 Identities=16% Similarity=0.228 Sum_probs=54.6
Q ss_pred CCCcccceEEEEeCCCCCCCCCcchh--hhhchhhhhhhhhhhheeccCCCCCceEEEEE---ecCCceEEEEc---C--
Q psy15035 553 DDMTLTHWTGMIIGPPRTSTTGHIMD--TIIGYIMSVLNEILHLFWISRKPDNTLMINIK---SNTGNTVCVNL---D-- 622 (816)
Q Consensus 553 ~d~~l~~w~~~i~GP~~t~~e~~~~~--l~i~f~~~yp~~~p~~~~~~~~~~~~M~V~Vk---~~~g~t~~v~V---~-- 622 (816)
...+|..|.|+|- .+|+|..|. +.|-||++||..||.+|. . .+..|.|... ..+|+. .+.. +
T Consensus 49 ~~~~LL~l~GtIp----v~y~g~~y~iPi~Iwlp~~YP~~pP~vfv-~--pt~~m~I~~~~~Vd~~G~i-~lpyL~~W~~ 120 (146)
T 3obq_A 49 GSRELMNLTGTIP----VPYRGNTYNIPICLWLLDTYPYNPPICFV-K--PTSSMTIKTGKHVDANGKI-YLPYLHEWKH 120 (146)
T ss_dssp TTCEEEEEEEEEE----EECSSCEEEEEEEEECCTTTTTSCCEEEE-C--CCTTEEECCBTTBCTTCBB-CCHHHHTCCT
T ss_pred ChheEEEEEEEee----eeecCccccceEEEEeCccCCCCCCEEEE-e--CCCCCEECCCCCCCCCCCE-ecccccccCC
Confidence 3357889999995 889999888 599999999999999972 2 2456765421 124543 2221 2
Q ss_pred CCCcHHHHHHHHhhhhC
Q psy15035 623 PASDIRNVKEMIAPKLG 639 (816)
Q Consensus 623 ~~~TV~~LK~~I~~~~G 639 (816)
+..++.+|-+.+...+|
T Consensus 121 ~~snL~~ll~~l~~~F~ 137 (146)
T 3obq_A 121 PQSDLLGLIQVMIVVFG 137 (146)
T ss_dssp TTCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHh
Confidence 35677777777777665
No 191
>4a3p_A Ubiquitin carboxyl-terminal hydrolase 15; 1.40A {Homo sapiens} PDB: 4a3o_A 3pv1_A 3ppa_A* 3t9l_A 3lmn_A
Probab=84.17 E-value=1.7 Score=43.93 Aligned_cols=64 Identities=19% Similarity=0.290 Sum_probs=51.6
Q ss_pred eEEEEcCCCCcHHHHHHHHhhhhCCCCC-CeEEE--E-CC--eecCC-CccccccCCCCCCEEEEe-eCCCC
Q psy15035 616 TVCVNLDPASDIRNVKEMIAPKLGLKYE-EVKII--F-AG--KELED-TTIISECDLGQQSILHAV-KSSPE 679 (816)
Q Consensus 616 t~~v~V~~~~TV~~LK~~I~~~~Gip~~-~qrLi--f-~G--k~L~d-~~tL~~~~I~~~stl~lv-r~~gg 679 (816)
.+++.++..+||.+|++.+....+||++ +.||. + .+ ..|.+ +.||.+++|.++..|.+- |...|
T Consensus 141 ~~~~~~Sk~~ti~~l~~~~~~~~~i~~~~~~RlW~~~~~~~~~~L~~~~~tl~~~~l~~~Q~illE~r~~dg 212 (217)
T 4a3p_A 141 VVTRRFSKADTIDTIEKEIRKIFSIPDEKETRLWNKYMSNTFEPLNKPDSTIQDAGLYQGQVLVIEQKNEDG 212 (217)
T ss_dssp EEEEEECTTSBHHHHHHHHHHHTTCCTTSCEEEEEEEETTEEEECCCTTSBHHHHTCCTTCEEEEEECCCC-
T ss_pred ceEEEEcccchHHHHHHHHHHHhCCCCCCceEEEEecCCCCeeecCCCCCCHHHhCCCCCCEEEEEEecCCC
Confidence 3567889999999999999999999997 68885 3 22 33555 579999999999998888 76655
No 192
>4e74_A Plexin-A4; RBD, structural genomics, structural genomics consor SGC, signaling protein; 1.58A {Homo sapiens} PDB: 3q3j_A*
Probab=83.35 E-value=2.5 Score=38.43 Aligned_cols=71 Identities=21% Similarity=0.324 Sum_probs=50.4
Q ss_pred ceEEEEEecC---CceEEEEcCCCCcHHHHHHHHhhhh--CCC------CCCeEEEE-CC---e-ecCCC----------
Q psy15035 604 TLMINIKSNT---GNTVCVNLDPASDIRNVKEMIAPKL--GLK------YEEVKIIF-AG---K-ELEDT---------- 657 (816)
Q Consensus 604 ~M~V~Vk~~~---g~t~~v~V~~~~TV~~LK~~I~~~~--Gip------~~~qrLif-~G---k-~L~d~---------- 657 (816)
+|.++|-... ...++|.|-.-|||.++|++|-... |+| ++++.|-| .| + .|.|.
T Consensus 13 ~ltl~v~~~~~~~~~~i~VkVLdCDTItQvKeKiLd~vyk~~p~S~rP~~~~~dLEwr~g~~~~~iL~D~D~ts~~~~~w 92 (117)
T 4e74_A 13 TLVLSCVSPDNANSPEVPVKILNCDTITQVKEKILDAIFKNVPCSHRPKAADMDLEWRQGSGARMILQDEDITTKIENDW 92 (117)
T ss_dssp EEEEEECCC----CCCEEEEEETTSBHHHHHHHHHHHHTTTSCGGGSCCGGGEEEEEECTTSCEEEECSSSTTCCC---C
T ss_pred EEEEEEEccCCCCCCceEeeeecCCchHHHHHHHHHHHhcCCCcccCCCCCceeEEEecCCCCceEeecCCCccEecCcc
Confidence 4555554332 3458899999999999999998774 444 44566765 34 3 25442
Q ss_pred ---ccccccCCCCCCEEEEe
Q psy15035 658 ---TIISECDLGQQSILHAV 674 (816)
Q Consensus 658 ---~tL~~~~I~~~stl~lv 674 (816)
.||+.|+|.+|+++-|+
T Consensus 93 krLNTL~HY~V~dgatl~l~ 112 (117)
T 4e74_A 93 KRLNTLAHYQVPDGSVVALV 112 (117)
T ss_dssp CCCCBHHHHTCCTTCEEEEE
T ss_pred eEeccccccCCCCCCEEEEE
Confidence 37999999999999998
No 193
>1tyg_B YJBS; alpha beta barrel, protein-protein complex, THis, BIOS protein; 3.15A {Bacillus subtilis} SCOP: d.15.3.2
Probab=82.40 E-value=3.9 Score=35.21 Aligned_cols=69 Identities=13% Similarity=0.161 Sum_probs=46.1
Q ss_pred CCCceEEEEEecCCceEEEEcCCC-CcHHHHHHHHhhhhCCCCCCeEEEECCeecCCCccccccCCCCCCEEEEe-eCCC
Q psy15035 601 PDNTLMINIKSNTGNTVCVNLDPA-SDIRNVKEMIAPKLGLKYEEVKIIFAGKELEDTTIISECDLGQQSILHAV-KSSP 678 (816)
Q Consensus 601 ~~~~M~V~Vk~~~g~t~~v~V~~~-~TV~~LK~~I~~~~Gip~~~qrLif~Gk~L~d~~tL~~~~I~~~stl~lv-r~~g 678 (816)
.+.+|+|+| +|+. ++++.. .||.+|.+.+ ++++....+..+|..+..+ ...+.-|++|+.|-++ ...|
T Consensus 17 ~~~~M~I~v---NGe~--~el~~~~~Tv~dLL~~L----~~~~~~vaVavNg~iV~~~-~~~~~~L~dGD~Vei~~~V~G 86 (87)
T 1tyg_B 17 IGGRHMLQL---NGKD--VKWKKDTGTIQDLLASY----QLENKIVIVERNKEIIGKE-RYHEVELCDRDVIEIVHFVGG 86 (87)
T ss_dssp -----CEEE---TTEE--ECCSSSCCBHHHHHHHT----TCTTSCCEEEETTEEECGG-GTTTSBCCSSSEEEEEEECCC
T ss_pred CCcceEEEE---CCEE--EECCCCCCcHHHHHHHh----CCCCCCEEEEECCEECChh-hcCCcCCCCCCEEEEEccccc
Confidence 456787776 4564 566776 8999999875 6778777888999877532 3334568899999999 5555
Q ss_pred C
Q psy15035 679 E 679 (816)
Q Consensus 679 g 679 (816)
|
T Consensus 87 G 87 (87)
T 1tyg_B 87 G 87 (87)
T ss_dssp -
T ss_pred C
Confidence 4
No 194
>3hjl_A Flagellar motor switch protein FLIG; armadillo repeat motif, superhelix, conformational plasticit repeat, torque generation; 2.40A {Aquifex aeolicus}
Probab=82.23 E-value=15 Score=39.44 Aligned_cols=189 Identities=12% Similarity=0.149 Sum_probs=108.0
Q ss_pred HhcCCHHHHHHHHHHHhHHHHHHhhCcCchHHHHHHHHhcCCHHHHHHHHHHHhcC----cceeeccCCcchhHHhhcC-
Q psy15035 54 LKSGDENTKNEIIKALQPHVVTLLSHTTASPVLMYAHDQVASPAQKLAMRQELYGG----LYESTGDKKINCLGDIFEQ- 128 (816)
Q Consensus 54 L~~gs~eqr~~Ii~e~~g~v~~L~~h~~G~~VVqk~~~~~at~eQr~~Li~e~yg~----~~~l~kd~~~~~l~~ile~- 128 (816)
+.+-++++...|+.+|+..+..-..-..|+..+..+++..-.+++-..|+.++++. .|...+.-....|..+|.+
T Consensus 49 l~~v~~~~~~~Vl~EF~~~~~~~~~i~~gg~~~~~~L~~aLg~~~A~~ll~~i~~~~~~~~~~~L~~~dp~~la~~i~~E 128 (329)
T 3hjl_A 49 LESVPEEEIENIAEELLDEIKKAGIKIKKPEEFIENIKKVIPPTLAEKFRGILELGDAEKILKEIEKVDSRILASLLKNE 128 (329)
T ss_dssp CCCCCHHHHHHHHHHHHHHHHHTTCCCSCHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHTTS
T ss_pred cCCCCHHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhCCHHHHHHHHHHHhccccCCHHHHHHCCCHHHHHHHHHhC
Confidence 34568899999999998877665443333366666666555666667788887765 2333344456666677766
Q ss_pred ChhHHHHHHHHHHHHHHHhhhh--hcccCCcchhhhHHHhhhcCCChhhHHHHHHHhCCCCcccc----ccCcChHHHHH
Q psy15035 129 SPEMKTAILSVTKKTILKSLQK--TQVTGSALLHAVLLDFISHSSDSPDLMEVLEMLAPLPLLPF----VHSKAGASVAM 202 (816)
Q Consensus 129 ~pekk~~Il~~l~~~l~~lv~K--~~~~~~~ivh~vl~ey~~~~~~~~~~~~iie~l~~~~l~~L----~~tk~Gs~Vv~ 202 (816)
+|.-...|+.+|....-.-+=. .+-...-++.++. -+...++ +-..++=+.|... +..+ .....|...+-
T Consensus 129 hPQtiAlILs~L~p~~AA~vL~~Lp~~~r~ev~~Ria--~l~~v~p-~~l~~le~~L~~~-l~~~~~~~~~~~gG~~~vA 204 (329)
T 3hjl_A 129 HPQTIALFLSQLSPKKSAEIIQNLPEELKKEVVKRIA--TLENVNV-QYVKELAQILLEE-ISSLGAKEALKLEGTAVAA 204 (329)
T ss_dssp CHHHHHHHHTTSCHHHHHHHHHTSCHHHHHHHHHHHH--HCSCCCH-HHHHHHHHHHHHH-HHHHHHHHSCCCCHHHHHH
T ss_pred CHHHHHHHHHcCCHHHHHHHHHhCCHHHHHHHHHHHH--ccCCCCH-HHHHHHHHHHHHH-HHhcccccccccccHHHHH
Confidence 6666666666554332111100 0001112222221 1122333 4444444444433 3322 23478999999
Q ss_pred HHHhhcCHHHHHHHHHHHHHHHHHHhhC------------cCchHHHHHHHccCCc
Q psy15035 203 HIIWNATNKLKKKIVKELKGHLREVATS------------EFGHLVLVTLLDNVDD 246 (816)
Q Consensus 203 ~cl~~~~~kdRk~Iik~lk~~v~~La~d------------~~G~~Vlq~~l~~~DD 246 (816)
.+|.+.+....+.|+..|..+=.+++.. .-..+-||++|..+|.
T Consensus 205 ~ILN~~d~~~e~~il~~L~~~dpela~~Ir~~MF~Fedl~~lddr~iq~llrev~~ 260 (329)
T 3hjl_A 205 ELLNTLDKETRELILQSIGQEDPLLEERIREKMFTFEDIRKLSDRDIIEILKVVDK 260 (329)
T ss_dssp HHHHHSCHHHHHHHHHHHHHHCHHHHHHHHHHHSCGGGGGGSCHHHHHHHHTTSCH
T ss_pred HHHhcCChHHHHHHHHHHHHhCHHHHHHHHHHhcCHHHHhCCCHHHHHHHHHhCCH
Confidence 9999999999999999998543222211 3345567777777653
No 195
>3rpf_C Molybdopterin converting factor, subunit 1 (MOAD); MCSG, PSI-biology, structural genomics, midwest center for S genomics, transferase; 1.90A {Helicobacter pylori}
Probab=82.06 E-value=4.8 Score=33.12 Aligned_cols=70 Identities=13% Similarity=0.241 Sum_probs=45.8
Q ss_pred eEEEEEecCC-ceEEEEcCCCCcHHHHHHHHhhhhCCCC--CCeEEEECCeecCCCccccccCCCCCCEEEEe-eCCCC
Q psy15035 605 LMINIKSNTG-NTVCVNLDPASDIRNVKEMIAPKLGLKY--EEVKIIFAGKELEDTTIISECDLGQQSILHAV-KSSPE 679 (816)
Q Consensus 605 M~V~Vk~~~g-~t~~v~V~~~~TV~~LK~~I~~~~Gip~--~~qrLif~Gk~L~d~~tL~~~~I~~~stl~lv-r~~gg 679 (816)
|.|.||.... +.-.+++ ...||.+|.+.+....++.. ....+.-+|+...+ .+.-|++|+.|.++ +..||
T Consensus 1 M~v~V~~fa~l~~~~~e~-~~~tv~~ll~~L~~~~~l~~~l~~~~vavN~~~v~~----~~~~l~~gDeV~i~PpvsGG 74 (74)
T 3rpf_C 1 MMVEVRFFGPIKEENFFI-KANDLKELRAILQEKEGLKEWLGVCAIALNDHLIDN----LNTPLKDGDVISLLPPVCGG 74 (74)
T ss_dssp CEEEEEECTTCCCCCEEE-ECSSHHHHHHHHHTCTTTTTTTTTCEEEESSSEECC----TTCCCCTTCEEEEECCBCCC
T ss_pred CEEEEEEEeecceeEEee-CCCcHHHHHHHHHHCcCHHHHhhccEEEECCEEcCC----CCcCCCCCCEEEEECCCCCC
Confidence 5667766532 1123566 56799999999987644332 34566678876443 24568889999999 66655
No 196
>1wgk_A Riken cDNA 2900073H19 protein; THis domain, ubiqutin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.3.3 PDB: 1xo3_A
Probab=80.80 E-value=11 Score=34.15 Aligned_cols=75 Identities=15% Similarity=0.192 Sum_probs=48.8
Q ss_pred CCCceEEEEEecC------C--ceEEEEcCC---CCcHHHHHHHHhhhh-C-----------CCCCCeEEEECCeecCCC
Q psy15035 601 PDNTLMINIKSNT------G--NTVCVNLDP---ASDIRNVKEMIAPKL-G-----------LKYEEVKIIFAGKELEDT 657 (816)
Q Consensus 601 ~~~~M~V~Vk~~~------g--~t~~v~V~~---~~TV~~LK~~I~~~~-G-----------ip~~~qrLif~Gk~L~d~ 657 (816)
|+.+|+|.|+..+ | +.+.++++. ..||.+|...+.+.. + +.+. ..++-+|...
T Consensus 8 ~~~~M~v~V~~~~~Lr~~~g~~~~~~vel~~~~~~~TV~~Ll~~L~~~~~~~~~~lf~~~g~lr~~-i~VlVN~~di--- 83 (114)
T 1wgk_A 8 MAAPLCVKVEFGGGAELLFDGVKKHQVALPGQEEPWDIRNLLVWIKKNLLKERPELFIQGDSVRPG-ILVLINDADW--- 83 (114)
T ss_dssp CCCCEEEEEEECTTTGGGTTTCSEEEEEECCCSSCCBHHHHHHHHTTTTCCSCHHHHCCSSSCCSS-EEEEESSSBH---
T ss_pred cCCCcEEEEEEchHHHHHhCCceEEEEEeCCCCCCCCHHHHHHHHHHHccchhHhhCccCCcccCC-eEEEECCeee---
Confidence 5677999998863 3 256788883 369999999999876 1 1111 2223333311
Q ss_pred ccc--cccCCCCCCEEEEe-eCCCC
Q psy15035 658 TII--SECDLGQQSILHAV-KSSPE 679 (816)
Q Consensus 658 ~tL--~~~~I~~~stl~lv-r~~gg 679 (816)
+.| .++-|++|+.|.++ ...||
T Consensus 84 ~~l~gldt~L~dGDeV~iip~vaGG 108 (114)
T 1wgk_A 84 ELLGELDYQLQDQDSILFISTLHGG 108 (114)
T ss_dssp HHHCTTTCBCCSSEEEEEEECSCCC
T ss_pred eccCCcCcCCCCCCEEEEeCCCCCC
Confidence 111 35778999999999 77777
No 197
>3ivf_A Talin-1; FERM domain, cell membrane, cell projection, cytoskeleton, M phosphoprotein, cell adhesion, structural protein; 1.94A {Mus musculus} PDB: 2kma_A 2kc1_A
Probab=80.19 E-value=4.9 Score=43.68 Aligned_cols=69 Identities=13% Similarity=0.174 Sum_probs=56.0
Q ss_pred eEEEEEecCCceEEEEcCCCCcHHHHHHHHhhhhC----CCCCCeEEEE------CCeecCCCccccccCCCCCCEEEEe
Q psy15035 605 LMINIKSNTGNTVCVNLDPASDIRNVKEMIAPKLG----LKYEEVKIIF------AGKELEDTTIISECDLGQQSILHAV 674 (816)
Q Consensus 605 M~V~Vk~~~g~t~~v~V~~~~TV~~LK~~I~~~~G----ip~~~qrLif------~Gk~L~d~~tL~~~~I~~~stl~lv 674 (816)
+.+.|... +-+-++..+|++||.|.-..|.++.. .++++.-|+. .|.-|++++||..|++.++..++..
T Consensus 4 ~~~~~~~~-~~~~~~~f~~~~~v~~~~~~i~e~~~~~~~~~~~~y~l~~~~~~~~~~~Wl~~~~~l~~y~~~~~~~l~~~ 82 (371)
T 3ivf_A 4 LSLKISIG-NVVKTMQFEPSTMVYDACRMIRERIPEALAGPPNDFGLFLSDDDPKKGIWLEAGKALDYYMLRNGDTMEYR 82 (371)
T ss_dssp EEEEEEET-TEEEEEEECTTCBHHHHHHHHHTTCGGGGSSCGGGEEEEECCSSGGGCEECCTTSBGGGGTCCTTCEEEEE
T ss_pred EEEEEEec-ceeEEEEECCCCCHHHHHHHHHHhcccccCCCHHHCeEeccCCCCCcCEeccCCCCHHHhCCCCCceeecc
Confidence 33444444 66778999999999999999988864 4788888887 5677999999999999999988765
No 198
>3kuz_A Plexin-C1; structural genomics, structural genomics consortium, SGC; 2.30A {Homo sapiens}
Probab=74.43 E-value=12 Score=34.25 Aligned_cols=60 Identities=27% Similarity=0.414 Sum_probs=43.3
Q ss_pred ceEEEEcCCCCcHHHHHHHHhhhh----CCCC----CCeEEEE-CC---eecCC----------C----ccccccCCCCC
Q psy15035 615 NTVCVNLDPASDIRNVKEMIAPKL----GLKY----EEVKIIF-AG---KELED----------T----TIISECDLGQQ 668 (816)
Q Consensus 615 ~t~~v~V~~~~TV~~LK~~I~~~~----Gip~----~~qrLif-~G---k~L~d----------~----~tL~~~~I~~~ 668 (816)
..++|.|-.-|||.++|++|-... |+|- +++.|-| .| ..|.| + .||+.|+|.+|
T Consensus 39 ~~v~VkVLdCDTItQVKEKILdavYk~k~~pys~r~~d~dLEwr~g~~~~~L~D~D~tS~~~e~~wkrLNTL~HY~V~Dg 118 (126)
T 3kuz_A 39 RNISVNVLDCDTIGQAKEKIFQAFLSKNGSPYGLQLNEIGLELQMGTRQKELLDIDSSSVILEDGITKLNTIGHYEISNG 118 (126)
T ss_dssp CEEEEEEETTCBHHHHHHHHHHHHHHHHSSCCSSCGGGEEEEEEETTEEEEECSSCTTCCBCTTSCBCCCBTGGGTCCTT
T ss_pred CceEeeeecCCcHHHHHHHHHHHHhccCCCcCCCCccccceEEecCCCcceeeccCCcceEecCCeeEeccccccCCCCC
Confidence 468899999999999999997663 6654 4455544 22 23322 1 26888999999
Q ss_pred CEEEEe
Q psy15035 669 SILHAV 674 (816)
Q Consensus 669 stl~lv 674 (816)
++|-++
T Consensus 119 atlal~ 124 (126)
T 3kuz_A 119 STIKVF 124 (126)
T ss_dssp CEEEEE
T ss_pred CEEEEe
Confidence 999887
No 199
>2k9x_A Tburm1, uncharacterized protein; unknown function; NMR {Trypanosoma brucei}
Probab=73.04 E-value=2.2 Score=38.42 Aligned_cols=77 Identities=9% Similarity=0.132 Sum_probs=47.3
Q ss_pred CCCceEEEEEecC------CceEEEEcCC----CCcHHHHHHHHhhhhCCCCCCeEEEE-CC--e------ecCCCccc-
Q psy15035 601 PDNTLMINIKSNT------GNTVCVNLDP----ASDIRNVKEMIAPKLGLKYEEVKIIF-AG--K------ELEDTTII- 660 (816)
Q Consensus 601 ~~~~M~V~Vk~~~------g~t~~v~V~~----~~TV~~LK~~I~~~~Gip~~~qrLif-~G--k------~L~d~~tL- 660 (816)
|+.+|+|.|+... |+...++++. ..||.+|-..+.+... ...-+|+- +| . .|-|++..
T Consensus 1 ~~~~m~v~V~f~g~l~~l~g~~~~v~l~~~~g~~~TV~dLl~~L~~~~~--~~r~~lf~~~g~~~lrpgIlVLVNg~d~e 78 (110)
T 2k9x_A 1 MSNHNHITVQFAGGCELLFAKQTSLQLDGVVPTGTNLNGLVQLLKTNYV--KERPDLLVDQTGQTLRPGILVLVNSCDAE 78 (110)
T ss_dssp CCCSSCCEEEEESSCGGGTTSCSEECCCCSCGGGCCHHHHHHHHTTTTC--CSCHHHHBCSSSSSBCTTEEEEESSSBHH
T ss_pred CCCccEEEEEEEecHHHHhCCeEEEEeCCcCCCCccHHHHHHHHHHHcc--ccchhhEecCCCcccCCCeEEEECCeeee
Confidence 3456888888764 4556677773 2599999999888752 11222221 12 1 22223222
Q ss_pred ----cccCCCCCCEEEEe-eCCCC
Q psy15035 661 ----SECDLGQQSILHAV-KSSPE 679 (816)
Q Consensus 661 ----~~~~I~~~stl~lv-r~~gg 679 (816)
.+|-|++|+.|.++ .+.||
T Consensus 79 ~l~gldt~L~dgD~V~fistlhg~ 102 (110)
T 2k9x_A 79 VVGGMDYVLNDGDTVEFISTLHGG 102 (110)
T ss_dssp HHTSSCCCCCSSCEEEEEECCCCC
T ss_pred ccCCcccCCCCcCEEEEeCCCccc
Confidence 35779999999998 67776
No 200
>3po0_A Small archaeal modifier protein 1; ubiquitin-like protein, protein binding; 1.55A {Haloferax volcanii} PDB: 2l83_A
Probab=71.19 E-value=23 Score=29.90 Aligned_cols=60 Identities=15% Similarity=0.178 Sum_probs=44.0
Q ss_pred ceEEEEcCCCCcHHHHHHHHhhhhC-C-----C-----CCCeEEEECCeecCCCccccccCCCCCCEEEEe-eCCCC
Q psy15035 615 NTVCVNLDPASDIRNVKEMIAPKLG-L-----K-----YEEVKIIFAGKELEDTTIISECDLGQQSILHAV-KSSPE 679 (816)
Q Consensus 615 ~t~~v~V~~~~TV~~LK~~I~~~~G-i-----p-----~~~qrLif~Gk~L~d~~tL~~~~I~~~stl~lv-r~~gg 679 (816)
....++++...||.+|.+.+..+.. + . .....+.-+|+.... +.-|.+|+.|.++ +..||
T Consensus 18 ~~~~~~~~~~~Tv~~ll~~L~~~~p~~~~~~l~~~g~l~~~~~v~VN~~~v~~-----~~~l~~gDeV~i~Ppv~GG 89 (89)
T 3po0_A 18 RTVRVDVDGDATVGDALDALVGAHPALESRVFGDDGELYDHINVLRNGEAAAL-----GEATAAGDELALFPPVSGG 89 (89)
T ss_dssp SEEEEECCTTCBHHHHHHHHHHHCGGGHHHHBCTTSCBCTTSEEEETTEECCT-----TSBCCTTCEEEEECCCSCC
T ss_pred CeEEEECCCCCcHHHHHHHHHHHCcHHHHHHhccCCcccccEEEEECCEECCC-----CcccCCCCEEEEECCCCCC
Confidence 5678888888899999999987752 1 1 122567778887765 4557889999999 66654
No 201
>2kl0_A Putative thiamin biosynthesis THis; structural genomics, PSI-2, protein structure initiative, N structural genomics consortium, NESG; NMR {Rhodopseudomonas palustris} PDB: 2lek_A
Probab=70.19 E-value=8 Score=31.98 Aligned_cols=64 Identities=6% Similarity=0.101 Sum_probs=45.7
Q ss_pred eEEEEEecCCceEEEEcCCCCcHHHHHHHHhhhhCCCCCCeEEEECCeecCCCccccccCCCCCCEEEEe-eCCCC
Q psy15035 605 LMINIKSNTGNTVCVNLDPASDIRNVKEMIAPKLGLKYEEVKIIFAGKELEDTTIISECDLGQQSILHAV-KSSPE 679 (816)
Q Consensus 605 M~V~Vk~~~g~t~~v~V~~~~TV~~LK~~I~~~~Gip~~~qrLif~Gk~L~d~~tL~~~~I~~~stl~lv-r~~gg 679 (816)
|+|+| +|+. +++ ...||.+|-+. .|+++...-+..+|..+.. ....+.-|++|+.|-++ ...||
T Consensus 1 M~I~v---NG~~--~e~-~~~Tl~~LL~~----l~~~~~~vAV~vNg~iVpr-~~~~~~~L~dGD~veIv~~VgGG 65 (73)
T 2kl0_A 1 MLVTI---NGEQ--REV-QSASVAALMTE----LDCTGGHFAVALNYDVVPR-GKWDETPVTAGDEIEILTPRQGG 65 (73)
T ss_dssp CCEEE---TTEE--ECC-CCSBHHHHHHH----TTCCSSSCEEEESSSEECH-HHHTTCBCCTTCEEEEECCCCCC
T ss_pred CEEEE---CCEE--EEc-CCCcHHHHHHH----cCCCCCcEEEEECCEECCh-HHcCcccCCCCCEEEEEccccCC
Confidence 44544 4665 445 56899999874 6888888888899987743 23345567889999999 55555
No 202
>1f0z_A THis protein; ubiquitin fold, transport protein; NMR {Escherichia coli} SCOP: d.15.3.2 PDB: 1zud_2
Probab=70.02 E-value=9.5 Score=30.57 Aligned_cols=60 Identities=2% Similarity=0.009 Sum_probs=42.6
Q ss_pred CCceEEEEcCCCCcHHHHHHHHhhhhCCCCCCeEEEECCeecCCCccccccCCCCCCEEEEe-eCCCC
Q psy15035 613 TGNTVCVNLDPASDIRNVKEMIAPKLGLKYEEVKIIFAGKELEDTTIISECDLGQQSILHAV-KSSPE 679 (816)
Q Consensus 613 ~g~t~~v~V~~~~TV~~LK~~I~~~~Gip~~~qrLif~Gk~L~d~~tL~~~~I~~~stl~lv-r~~gg 679 (816)
+|+. +++....||.+|.+.+ ++++....+..+|.....+ ...+.-+++|+.|.++ ...||
T Consensus 6 Ng~~--~~~~~~~tv~~ll~~l----~~~~~~v~vavN~~~v~~~-~~~~~~L~~gD~v~i~~~V~GG 66 (66)
T 1f0z_A 6 NDQA--MQCAAGQTVHELLEQL----DQRQAGAALAINQQIVPRE-QWAQHIVQDGDQILLFQVIAGG 66 (66)
T ss_dssp SSCE--ECCCTTCCHHHHHHHH----TCCCSSEEEEETTEEECHH-HHTTCCCCTTEEECEEESCCCC
T ss_pred CCEE--EEcCCCCcHHHHHHHc----CCCCCCEEEEECCEECCch-hcCCcCCCCCCEEEEEeecccC
Confidence 5664 5667778999999876 6777777788888876532 2234457889999999 45444
No 203
>3dwg_C 9.5 kDa culture filtrate antigen CFP10A; sulfur carrier protein complex, beta-grAsp fold, amino-acid biosynthesis; HET: PLP; 1.53A {Mycobacterium tuberculosis} PDB: 3dwm_A
Probab=69.31 E-value=17 Score=31.06 Aligned_cols=73 Identities=10% Similarity=0.111 Sum_probs=44.9
Q ss_pred eEEEEEec------CCceEEEEcCCCCcHHHHHHHHhhhhC-----C-C-------CCCeEEEECCeecCCCccccccCC
Q psy15035 605 LMINIKSN------TGNTVCVNLDPASDIRNVKEMIAPKLG-----L-K-------YEEVKIIFAGKELEDTTIISECDL 665 (816)
Q Consensus 605 M~V~Vk~~------~g~t~~v~V~~~~TV~~LK~~I~~~~G-----i-p-------~~~qrLif~Gk~L~d~~tL~~~~I 665 (816)
|+|+|+.. .|....+++ +..||.+|...+..+.. + . .....+.-+|+......- .+.-|
T Consensus 1 M~v~V~~fa~lr~~~g~~~~~~~-~~~Tv~~ll~~L~~~~p~l~~~l~~~~~~g~~~~~~~v~VN~~~v~~~~~-~~~~L 78 (93)
T 3dwg_C 1 MNVTVSIPTILRPHTGGQKSVSA-SGDTLGAVISDLEANYSGISERLMDPSSPGKLHRFVNIYVNDEDVRFSGG-LATAI 78 (93)
T ss_dssp -CEEEECCGGGGGGTTTCSEEEE-CCSBHHHHHHHHHHHSTTHHHHHBCSSSTTSBCTTEEEEETTEEGGGTTG-GGCBC
T ss_pred CEEEEEEeHHHHHHhCCCeEEec-CCCCHHHHHHHHHHHChhHHHHHhccccCCcccCCEEEEECCEEccCcCC-CCcCC
Confidence 45555543 343334665 45799999999987752 0 1 113566678877653222 24568
Q ss_pred CCCCEEEEe-eCCCC
Q psy15035 666 GQQSILHAV-KSSPE 679 (816)
Q Consensus 666 ~~~stl~lv-r~~gg 679 (816)
++|+.|.++ +..||
T Consensus 79 ~~gDeV~i~Ppv~GG 93 (93)
T 3dwg_C 79 ADGDSVTILPAVAGG 93 (93)
T ss_dssp CTTCEEEEEECCTTC
T ss_pred CCCCEEEEECCCCCC
Confidence 899999999 66665
No 204
>1wfe_A Riken cDNA 2310008M20 protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1
Probab=68.93 E-value=2.8 Score=36.03 Aligned_cols=47 Identities=19% Similarity=0.580 Sum_probs=37.0
Q ss_pred eeccCc--CCCceeEecCCCCCccccccCcceeccccCCCCCCCCcccceeEeecccccccCCCCCccccccccccccCC
Q psy15035 728 RVRCAQ--CKSGAVIVDRDPQSWSDVLEPRQISCHCTEEHCTTGPVSWAEFYFKCAQHVSANMNQVDECLPLSLVTSNVR 805 (816)
Q Consensus 728 Rv~C~~--C~~~~~t~~~~p~~w~dvl~~~ri~g~c~~~~c~~~~~~~a~f~fkc~~h~~~~~~~~~~~~~l~~~~~n~~ 805 (816)
..+|+. |++..| +...|. .|.+ .| |++|+.. |+|.|..+.-.+.+..
T Consensus 25 ~~~C~~~~Ck~~~~-----------------l~f~C~--~C~~------~F---C~~HR~~---e~H~C~~~~~~k~~~~ 73 (86)
T 1wfe_A 25 SYSCSFKGCTDVEL-----------------VAVICP--YCEK------NF---CLRHRHQ---SDHDCEKLEVAKPRMA 73 (86)
T ss_dssp CEECCSTTCCCEES-----------------SCEECT--TTCC------EE---CGGGCST---GGGTCSSSSCCCSSCC
T ss_pred CCCCCCcCCCCCCc-----------------cceECC--CCCc------cc---ccccCCc---cCCCCCCCcccccchH
Confidence 357986 998543 567898 8976 89 9999997 7999999887776654
No 205
>1wg2_A Zinc finger (AN1-like) family protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=68.41 E-value=4.4 Score=32.76 Aligned_cols=37 Identities=27% Similarity=0.724 Sum_probs=26.0
Q ss_pred eeccCcCCCceeEecCCCCCccccccCcceeccccCCCCCCCCcccceeEeecccccccCCCCCcccc
Q psy15035 728 RVRCAQCKSGAVIVDRDPQSWSDVLEPRQISCHCTEEHCTTGPVSWAEFYFKCAQHVSANMNQVDECL 795 (816)
Q Consensus 728 Rv~C~~C~~~~~t~~~~p~~w~dvl~~~ri~g~c~~~~c~~~~~~~a~f~fkc~~h~~~~~~~~~~~~ 795 (816)
..||+.|+...= -+...| .|.+ .| |+.|+.. |+|.|.
T Consensus 15 ~~rC~~C~kkvg----------------l~~f~C---rCg~------~F---C~~HR~~---e~H~C~ 51 (64)
T 1wg2_A 15 NNRCFSCNKKVG----------------VMGFKC---KCGS------TF---CGSHRYP---EKHECS 51 (64)
T ss_dssp SCSCTTTCCCCT----------------TSCEEC---TTSC------EE---CSSSCSS---TTTTCC
T ss_pred CCcChhhCCccc----------------ccCeEe---ecCC------Ee---cccCCCc---cccCCC
Confidence 468999998411 235677 3755 79 9999997 577664
No 206
>2kvr_A Ubiquitin carboxyl-terminal hydrolase 7; USP7, ubiquitin-like domain, UBL, ubiquitin specific protease, HOST-virus interaction, nucleus, protease; NMR {Homo sapiens}
Probab=68.00 E-value=4 Score=37.84 Aligned_cols=33 Identities=6% Similarity=0.223 Sum_probs=29.7
Q ss_pred EEEcCCCCcHHHHHHHHhhhhCCCCCCeEEEEC
Q psy15035 618 CVNLDPASDIRNVKEMIAPKLGLKYEEVKIIFA 650 (816)
Q Consensus 618 ~v~V~~~~TV~~LK~~I~~~~Gip~~~qrLif~ 650 (816)
++.|..++|+.+|+..|++..|+|+++|||..-
T Consensus 59 ~~rv~k~~~~~~~~~~va~~lg~~~~~~RlW~~ 91 (130)
T 2kvr_A 59 VFKVLKNSSLAEFVQSLSQTMGFPQDQIRLWPM 91 (130)
T ss_dssp EEECCTTSBHHHHHHHHHHHHCCCGGGCEEEEC
T ss_pred eEEEeccCcHHHHHHHHHHHhCCCcccEEEEEe
Confidence 467889999999999999999999999999743
No 207
>2juo_A GA-binding protein alpha chain; OST, ubiquitin, transcription factor, ensemble, DNA-binding, nucleus, transcription regulation; NMR {Mus musculus}
Probab=67.27 E-value=10 Score=32.16 Aligned_cols=58 Identities=16% Similarity=0.284 Sum_probs=51.1
Q ss_pred EEEEcCCCCcHHHHHHHHhhhhCCCCCCeEEEECCeecCCCccccccCCCCCCEEEEe
Q psy15035 617 VCVNLDPASDIRNVKEMIAPKLGLKYEEVKIIFAGKELEDTTIISECDLGQQSILHAV 674 (816)
Q Consensus 617 ~~v~V~~~~TV~~LK~~I~~~~Gip~~~qrLif~Gk~L~d~~tL~~~~I~~~stl~lv 674 (816)
+.-.++-..++..||..++.+.|++-+...+...+..|+++.+|-+-+++-.-.|.+.
T Consensus 5 i~qhmDI~epL~~Lk~LLe~Rl~i~L~~y~f~LQd~~L~~~k~LvdQcVqgeGlVQin 62 (89)
T 2juo_A 5 VSQAIDINEPIGNLKKLLEPRLQCSLDAHEICLQDIQLDPDRSLFDQGVKTDGTVQLS 62 (89)
T ss_dssp EEEEEESSSBGGGHHHHSHHHHCSCCSSCEEEETTEECCTTSBTTTSSCCCCSEEEEE
T ss_pred hhhhccccCcHHHHHHHHHHHhcCCcccCeEEeeccccCCCccHHHhhcccccEEEEE
Confidence 3445666788999999999999999999999999999999999999999888888876
No 208
>1wfl_A Zinc finger protein 216; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1
Probab=66.07 E-value=3.2 Score=34.46 Aligned_cols=37 Identities=24% Similarity=0.639 Sum_probs=26.5
Q ss_pred eeccCcCCCceeEecCCCCCccccccCcceeccccCCCCCCCCcccceeEeecccccccCCCCCcccc
Q psy15035 728 RVRCAQCKSGAVIVDRDPQSWSDVLEPRQISCHCTEEHCTTGPVSWAEFYFKCAQHVSANMNQVDECL 795 (816)
Q Consensus 728 Rv~C~~C~~~~~t~~~~p~~w~dvl~~~ri~g~c~~~~c~~~~~~~a~f~fkc~~h~~~~~~~~~~~~ 795 (816)
.+||..|+...- .|...|. |.+ .| |+.|+.. |++.|.
T Consensus 25 ~nRC~~CrKkvg----------------L~gf~Cr---Cg~------~F---Cs~HRy~---e~H~C~ 61 (74)
T 1wfl_A 25 KNRCFMCRKKVG----------------LTGFDCR---CGN------LF---CGLHRYS---DKHNCP 61 (74)
T ss_dssp TTBCSSSCCBCG----------------GGCEECT---TSC------EE---CSSSCST---TTTTCC
T ss_pred CCcChhhCCccc----------------ccCeecC---CCC------Ee---chhcCCC---ccCCCc
Confidence 578999998422 3556676 744 78 9999997 577663
No 209
>1vd2_A Protein kinase C, IOTA type; PB1 domain, OPCA motif, APKC, ZIP/P62, MEK5, molecular recognition, transferase; NMR {Homo sapiens} SCOP: d.15.2.2 PDB: 1wmh_A
Probab=65.54 E-value=21 Score=30.78 Aligned_cols=50 Identities=6% Similarity=0.216 Sum_probs=41.0
Q ss_pred CCceEEEEEecCCceEEEEcCCCCcHHHHHHHHhhhhCCCCCC-eEEEECCe
Q psy15035 602 DNTLMINIKSNTGNTVCVNLDPASDIRNVKEMIAPKLGLKYEE-VKIIFAGK 652 (816)
Q Consensus 602 ~~~M~V~Vk~~~g~t~~v~V~~~~TV~~LK~~I~~~~Gip~~~-qrLif~Gk 652 (816)
++.|+|.+.. +|..+.+.++++.+..+|.+++....+++..+ +.+-|...
T Consensus 4 ~~~vkvK~~~-~gdi~~~~v~~~i~~~~L~~kv~~~~~~~~~~~f~lky~DE 54 (89)
T 1vd2_A 4 GSQVRVKAYY-RGDIMITHFEPSISFEGLCNEVRDMCSFDNEQLFTMKWIDE 54 (89)
T ss_dssp SSCEEEEEES-SSCEEEEEECTTCCHHHHHHHHHHHTTCCSSCCEEEEECCS
T ss_pred CCeEEEEEEe-CCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCeEEEEEECC
Confidence 3567787766 47888999999999999999999999998655 67777654
No 210
>3ig3_A Plxna3 protein; plexin intracellular GAP RBD inactive, membrane, transmembra membrane protein, signaling protein; 1.99A {Mus musculus} PDB: 3ryt_A*
Probab=64.41 E-value=19 Score=41.39 Aligned_cols=70 Identities=16% Similarity=0.285 Sum_probs=49.9
Q ss_pred eEEEEEecC---CceEEEEcCCCCcHHHHHHHHhhhh--CCC------CCCeEEEE----CCe-ecCCC-----------
Q psy15035 605 LMINIKSNT---GNTVCVNLDPASDIRNVKEMIAPKL--GLK------YEEVKIIF----AGK-ELEDT----------- 657 (816)
Q Consensus 605 M~V~Vk~~~---g~t~~v~V~~~~TV~~LK~~I~~~~--Gip------~~~qrLif----~Gk-~L~d~----------- 657 (816)
|.++|-... ...++|.|-..|||.++|++|-... |+| +++.-|-| +|+ .|.|.
T Consensus 234 ltL~v~~~~~~~~~~i~vkVLdCDTItQVKeKiLdavYk~~pyS~rP~~~~~dLEwr~g~~g~~iL~D~D~ts~~~~~wk 313 (627)
T 3ig3_A 234 LTLHCVCPESEGSAQVPVKVLNCDSITQAKDKLLDTVYKGIPYSQRPKAEDMDLEWRQGRMARIILQDEDITTKIECDWK 313 (627)
T ss_dssp EEEEEECTTTC--CEEEEEEETTCBHHHHHHHHHHHHTTTSCGGGSCCGGGEEEEEESCSSCEEEECSSSTTCCEETTEE
T ss_pred EEEEEeccCCCCCCceeeEeeccCcHHHHHHHHHHHHHcCCCcccCCCCCccceeEeeCCCCceeeccCCccccccCcee
Confidence 444554332 3568899999999999999998774 443 45666765 333 24432
Q ss_pred --ccccccCCCCCCEEEEe
Q psy15035 658 --TIISECDLGQQSILHAV 674 (816)
Q Consensus 658 --~tL~~~~I~~~stl~lv 674 (816)
.||+.|+|.+|++|-++
T Consensus 314 rLNTL~HY~V~Dga~v~L~ 332 (627)
T 3ig3_A 314 RVNSLAHYQVTDGSLVALV 332 (627)
T ss_dssp ECCBTTTTTCCTTCEEEEE
T ss_pred EecchhhcCCCCCceEEEE
Confidence 37999999999999999
No 211
>1h4r_A Merlin; FERM, neurofibromatosis, NF2, structural protein, cytoskeleton, anti-oncogene; 1.8A {Homo sapiens} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 1isn_A 3u8z_A
Probab=63.98 E-value=19 Score=37.95 Aligned_cols=73 Identities=11% Similarity=0.151 Sum_probs=55.7
Q ss_pred CCCceEEEEEecCCceEEEEcCCCCcHHHHHHHHhhhhCCCCCC-eEEEE--CCe--ecCCCccccccCCCCCCEEEEe
Q psy15035 601 PDNTLMINIKSNTGNTVCVNLDPASDIRNVKEMIAPKLGLKYEE-VKIIF--AGK--ELEDTTIISECDLGQQSILHAV 674 (816)
Q Consensus 601 ~~~~M~V~Vk~~~g~t~~v~V~~~~TV~~LK~~I~~~~Gip~~~-qrLif--~Gk--~L~d~~tL~~~~I~~~stl~lv 674 (816)
.+..+.+.|..++| ++.+++++++|+.+|-+.|....|+...+ .-|.| .|. -|+.+.++.+.++..+....+.
T Consensus 19 ~~~~~~~~V~lldg-~~~~~v~~~t~~~el~~~v~~~l~L~e~~~FgL~~~~~~~~~wL~~~~~i~~q~~~~~~~~~l~ 96 (314)
T 1h4r_A 19 QPKTFTVRIVTMDA-EMEFNCEMKWKGKDLFDLVCRTLGLRETWFFGLQYTIKDTVAWLKMDKKVLDHDVSKEEPVTFH 96 (314)
T ss_dssp --CEEEEEEECSSC-EEEEEEETTCBHHHHHHHHHHHHTCCCGGGEEEEEEETTEEEECCTTSBGGGSSCCCSSSEEEE
T ss_pred CCCeeEEEEEeCCc-eEEEEeCCCCcHHHHHHHHHHHhCCCCCccceEEEEeCCcCeeCCCccCHHHcCCCCCCCEEEE
Confidence 56788999999998 88999999999999999999999997644 34544 443 3778888988876655555444
No 212
>3qa8_A MGC80376 protein; kinase ubiquitin-like domain, phosphorylation, kinase domain ubiquitin-like domain, kinase, substrate binding; 3.60A {Xenopus laevis} PDB: 3qad_A* 3rzf_A*
Probab=63.75 E-value=9.4 Score=45.11 Aligned_cols=52 Identities=15% Similarity=0.288 Sum_probs=42.8
Q ss_pred cCCceEEEEcCCCCcHHHHHHHHhhhhCCCCCCeEEEECC-eecCCCcccccc
Q psy15035 612 NTGNTVCVNLDPASDIRNVKEMIAPKLGLKYEEVKIIFAG-KELEDTTIISEC 663 (816)
Q Consensus 612 ~~g~t~~v~V~~~~TV~~LK~~I~~~~Gip~~~qrLif~G-k~L~d~~tL~~~ 663 (816)
.+.+...+.+.++.|+.+++..|+..+|||++.|.+++.+ ..+......++|
T Consensus 319 ~~~~~~~~~i~~~~tl~~l~~~i~~~T~i~~~~q~~~~~~~~~~~p~~~~~~~ 371 (676)
T 3qa8_A 319 VSGRVHTYPVTENENLQNLKSWLQQDTGIPEEEQELLQASGLALNSAQPLTQY 371 (676)
T ss_dssp SSSCCCEEECCTTCCHHHHHHHHHTTSCCCSTTCEEESSSSCCCCTTSCGGGS
T ss_pred cccccceeecCCCccHHHHHHHHHHHhCCCHHHHHHHhccCCCCCCCcchhhh
Confidence 3556677899999999999999999999999999999855 445666666665
No 213
>2k5p_A THis protein, thiamine-biosynthesis protein; NESG, GMR137, structural genomics, PSI-2, protein structure initiative; NMR {Geobacter metallireducens gs-15} PDB: 3cwi_A
Probab=63.16 E-value=8.5 Score=32.26 Aligned_cols=65 Identities=12% Similarity=0.217 Sum_probs=46.2
Q ss_pred eEEEEEecCCceEEEEcC--CCCcHHHHHHHHhhhhCCC-CCCeEEEECCeecCCCccccccCCCCCCEEEEe-eCCCC
Q psy15035 605 LMINIKSNTGNTVCVNLD--PASDIRNVKEMIAPKLGLK-YEEVKIIFAGKELEDTTIISECDLGQQSILHAV-KSSPE 679 (816)
Q Consensus 605 M~V~Vk~~~g~t~~v~V~--~~~TV~~LK~~I~~~~Gip-~~~qrLif~Gk~L~d~~tL~~~~I~~~stl~lv-r~~gg 679 (816)
|+|+| +|+. ++++ ...||.+|-+. .|++ +...-+..+|..+..+ ...+.-|++|+.|-++ ...||
T Consensus 1 M~I~v---NGe~--~e~~~~~~~Tl~~LL~~----l~~~~~~~vAVavNg~iVpr~-~~~~~~L~dGD~IEIv~~VgGG 69 (78)
T 2k5p_A 1 MNLTV---NGKP--STVDGAESLNVTELLSA----LKVAQAEYVTVELNGEVLERE-AFDATTVKDGDAVEFLYFMGGG 69 (78)
T ss_dssp CEEEE---TTEE--EECSSCSCEEHHHHHHH----HTCSCTTTCCEEETTEECCTT-HHHHCEECSSBCEEECCCCCCS
T ss_pred CEEEE---CCEE--EEcCCCCCCcHHHHHHH----cCCCCCCcEEEEECCEECChH-HcCcccCCCCCEEEEEeeecCC
Confidence 55555 4664 4555 67899999875 5788 7777788999887543 3445567789999999 55555
No 214
>3hm6_X Plexin-B1; structural genomics consortium, SGC, membrane, transmembrane receptor, cell membrane, glycoprotein, phosphoprotein; 2.40A {Homo sapiens} PDB: 3sua_D* 3su8_X*
Probab=61.74 E-value=21 Score=41.25 Aligned_cols=60 Identities=20% Similarity=0.293 Sum_probs=45.8
Q ss_pred ceEEEEcCCCCcHHHHHHHHhhhh--CCC------CCCeEEEE----CCe-ecCCC-------------ccccccCCCCC
Q psy15035 615 NTVCVNLDPASDIRNVKEMIAPKL--GLK------YEEVKIIF----AGK-ELEDT-------------TIISECDLGQQ 668 (816)
Q Consensus 615 ~t~~v~V~~~~TV~~LK~~I~~~~--Gip------~~~qrLif----~Gk-~L~d~-------------~tL~~~~I~~~ 668 (816)
..++|.|-..|||.++|++|-... |+| +++.-|-| .|+ .|.|. .||+.|+|.+|
T Consensus 274 ~~i~VkVLdCDTItQVKeKiLDavYk~~pyS~rP~~~~~dLEwr~g~~g~~iL~D~D~ts~~~~~wkrLNTL~HY~V~dg 353 (644)
T 3hm6_X 274 QGVPVKVLDCDTISQAKEKMLDQLYKGVPLTQRPDPRTLDVEWRSGVAGHLILSDEDVTSEVQGLWRRLNTLQHYKVPDG 353 (644)
T ss_dssp CCEEEEEETTSBHHHHHHHHHHHHTTTSCGGGSCCGGGEEEEEECSSSCEEEECSSSTTCCEETTEEECCBTTTTTCCTT
T ss_pred CceeeEeeccCcHHHHHHHHHHHHHcCCCcccCCCCCCcceEEeeCCCCceeecccCccceecCcceeecchhhcCCCCC
Confidence 458899999999999999998663 444 35566655 233 35543 38999999999
Q ss_pred CEEEEe
Q psy15035 669 SILHAV 674 (816)
Q Consensus 669 stl~lv 674 (816)
++|-|+
T Consensus 354 a~v~L~ 359 (644)
T 3hm6_X 354 ATVALV 359 (644)
T ss_dssp CEEEEE
T ss_pred cEEEEE
Confidence 999999
No 215
>1ef1_A Moesin; membrane, FERM domain, tail domain, membrane protein; 1.90A {Homo sapiens} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 1sgh_A 1j19_A 2emt_A 2ems_A 2d10_A 2d11_A 2yvc_A 2d2q_A 2zpy_A 1gc7_A 1gc6_A 1ni2_A
Probab=61.73 E-value=23 Score=36.84 Aligned_cols=70 Identities=13% Similarity=0.203 Sum_probs=53.0
Q ss_pred ceEEEEEecCCceEEEEcCCCCcHHHHHHHHhhhhCCCCCC-eEEEE---CCe--ecCCCccccccCCCCCCEEEEe
Q psy15035 604 TLMINIKSNTGNTVCVNLDPASDIRNVKEMIAPKLGLKYEE-VKIIF---AGK--ELEDTTIISECDLGQQSILHAV 674 (816)
Q Consensus 604 ~M~V~Vk~~~g~t~~v~V~~~~TV~~LK~~I~~~~Gip~~~-qrLif---~Gk--~L~d~~tL~~~~I~~~stl~lv 674 (816)
+|.+.|..++| ++.++|++++|+.++-+.|....|+...+ .-|.| +|. -|+.+.++.+.++..+....+.
T Consensus 1 ~i~~~V~l~d~-~~~~~v~~~tt~~el~~~v~~~l~L~e~~~FgL~~~~~~~~~~wLd~~~~l~~q~~~~~~~~~l~ 76 (294)
T 1ef1_A 1 TISVRVTTMDA-ELEFAIQPNTTGKQLFDQVVKTIGLREVWFFGLQYQDTKGFSTWLKLNKKVTAQDVRKESPLLFK 76 (294)
T ss_dssp CEEEEEEETTE-EEEEEECTTCBHHHHHHHHHHHHTCCCGGGEEEEEEBTTSCEEECCSSSBGGGSCBCCCSSEEEE
T ss_pred CEEEEEEECCc-eEEEEECCCCcHHHHHHHHHHHcCCCCcceeEEEEECCCCceeecccccCHHhhccCCCCCEEEE
Confidence 36788888888 78899999999999999999999997654 34544 343 3677888888776655555544
No 216
>1fm0_D Molybdopterin convertin factor, subunit 1; molybdenum cofactor biosynthesis, transferase; 1.45A {Escherichia coli} SCOP: d.15.3.1 PDB: 1fma_D 1jw9_D 1jwa_D* 1jwb_D* 3bii_D 1nvi_D
Probab=59.87 E-value=24 Score=29.03 Aligned_cols=58 Identities=7% Similarity=0.018 Sum_probs=41.2
Q ss_pred eEEEEcCCCCcHHHHHHHHhhhhC-----CCCCCeEEEECCeecCCCccccccCCCCCCEEEEe-eCCCC
Q psy15035 616 TVCVNLDPASDIRNVKEMIAPKLG-----LKYEEVKIIFAGKELEDTTIISECDLGQQSILHAV-KSSPE 679 (816)
Q Consensus 616 t~~v~V~~~~TV~~LK~~I~~~~G-----ip~~~qrLif~Gk~L~d~~tL~~~~I~~~stl~lv-r~~gg 679 (816)
...++ ....||.+|.+.+..+.. ++.....+..+|+.... +.-|++|+.|.++ ...||
T Consensus 18 ~~~~~-~~~~tv~~ll~~L~~~~p~~~~~l~~~~~~v~vN~~~v~~-----~~~l~~gD~V~i~Ppv~GG 81 (81)
T 1fm0_D 18 ATEVA-ADFPTVEALRQHMAAQSDRWALALEDGKLLAAVNQTLVSF-----DHPLTDGDEVAFFPPVTGG 81 (81)
T ss_dssp EEEEC-SCCSBHHHHHHHHHTTCHHHHHHHCCTTCEEEETTEECCT-----TCBCCTTCEEEEECCCCCC
T ss_pred eEEEc-CCCCCHHHHHHHHHHHChhHHHHhcCCCEEEEECCEECCC-----CCCCCCCCEEEEeCCCCCC
Confidence 45566 567799999999876532 33345567889987753 4567889999999 55554
No 217
>1wys_A Riken cDNA 2310008M20 protein; ZF-AN1 domain, zinc binding, NPPSFA, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus}
Probab=58.90 E-value=5.8 Score=33.19 Aligned_cols=42 Identities=21% Similarity=0.646 Sum_probs=33.6
Q ss_pred ceeccCc--CCCceeEecCCCCCccccccCcceeccccCCCCCCCCcccceeEeecccccccCCCCCcccccccc
Q psy15035 727 LRVRCAQ--CKSGAVIVDRDPQSWSDVLEPRQISCHCTEEHCTTGPVSWAEFYFKCAQHVSANMNQVDECLPLSL 799 (816)
Q Consensus 727 lRv~C~~--C~~~~~t~~~~p~~w~dvl~~~ri~g~c~~~~c~~~~~~~a~f~fkc~~h~~~~~~~~~~~~~l~~ 799 (816)
+-.+|+. |++--| +...|. .|.+ -| |+.|++. ++|.|..++-
T Consensus 13 ~g~~Cs~~~C~~~df-----------------lpf~C~--~C~~------~F---C~~HR~~---e~H~C~~~~~ 56 (75)
T 1wys_A 13 IGQHCQVQHCRQRDF-----------------LPFVCD--GCSG------IF---CLEHRSK---DSHGCSEVNV 56 (75)
T ss_dssp CCCCCSCTTTCCCSC-----------------CCEECT--TTCC------EE---CSTTCSS---GGGTCCCCSS
T ss_pred cCCCcCcccCCCccc-----------------eeeECc--ccCc------Cc---CcccCCc---cccCCCCCcc
Confidence 6678996 999544 577898 8966 79 9999997 7998887753
No 218
>1wfh_A Zinc finger (AN1-like) family protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=54.80 E-value=7.6 Score=31.37 Aligned_cols=37 Identities=30% Similarity=0.712 Sum_probs=25.9
Q ss_pred eeccCcCCCceeEecCCCCCccccccCcceeccccCCCCCCCCcccceeEeecccccccCCCCCcccc
Q psy15035 728 RVRCAQCKSGAVIVDRDPQSWSDVLEPRQISCHCTEEHCTTGPVSWAEFYFKCAQHVSANMNQVDECL 795 (816)
Q Consensus 728 Rv~C~~C~~~~~t~~~~p~~w~dvl~~~ri~g~c~~~~c~~~~~~~a~f~fkc~~h~~~~~~~~~~~~ 795 (816)
..||+.|+...= -+...|. |.+ .| |+.|+.. |+|.|.
T Consensus 15 ~~rC~~C~kkvg----------------l~~f~Cr---Cg~------~F---C~~HRy~---e~H~C~ 51 (64)
T 1wfh_A 15 PNRCTVCRKRVG----------------LTGFMCR---CGT------TF---CGSHRYP---EVHGCT 51 (64)
T ss_dssp CCCCTTTCCCCC----------------TTCEECS---SSC------EE---CTTTCST---TTTTCC
T ss_pred CCcChhhCCccC----------------ccCEEee---cCC------Ee---ccccCCc---ccCCCC
Confidence 468999998421 2346673 755 79 9999997 577663
No 219
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=54.47 E-value=25 Score=40.70 Aligned_cols=72 Identities=7% Similarity=0.164 Sum_probs=54.4
Q ss_pred CCceEEEEEecCCceEEEEcCCCCcHHHHHHHHhhhhCCCCCC-eEEEEC---C--eecCCCccccccCCCCCCEEEEe
Q psy15035 602 DNTLMINIKSNTGNTVCVNLDPASDIRNVKEMIAPKLGLKYEE-VKIIFA---G--KELEDTTIISECDLGQQSILHAV 674 (816)
Q Consensus 602 ~~~M~V~Vk~~~g~t~~v~V~~~~TV~~LK~~I~~~~Gip~~~-qrLif~---G--k~L~d~~tL~~~~I~~~stl~lv 674 (816)
+..+.+.|.+++| ++.+.|++++|+.+|-..|....|+.... +-|.|. | ..|+.+.++.+.++..+..+.+.
T Consensus 2 ~k~i~v~V~llDg-t~e~~vd~~tt~~ell~~V~~~LgL~e~~~FGL~~~d~~~~~~WLd~~k~i~~q~~~~~~~~~L~ 79 (575)
T 2i1j_A 2 PKSMNVRVTTMDA-ELEFAIQQTTTGKQLFDQVVKTIGLREVWFFGLQYTDSKGDLTWIKLYKKVMQQDVKKENPLQFK 79 (575)
T ss_dssp -CEEEEEEECSSC-EEEEEEETTCBHHHHHHHHHHHHTCCCGGGEEEEEEBTTSCEEECCTTSBGGGSCBCCCSSEEEE
T ss_pred CceEEEEEEeCCC-eEEEEECCCCCHHHHHHHHHHHcCCCCccceeEEEEecCcchhHhhccccHHHhcccCCCCeEEE
Confidence 4567889999988 78899999999999999999999996543 455552 2 34677788888777666655544
No 220
>2qjl_A URM1, ubiquitin-related modifier 1; ubiquitin-like protein, signaling protein; 1.44A {Saccharomyces cerevisiae} PDB: 2pko_A 2ax5_A
Probab=53.44 E-value=70 Score=27.54 Aligned_cols=72 Identities=7% Similarity=0.106 Sum_probs=43.9
Q ss_pred eEEEEEec------C-C-ceEEEEcC--CCCcHHHHHHHHhhhhCCCCCC-------------eEEEECCeecCCCccc-
Q psy15035 605 LMINIKSN------T-G-NTVCVNLD--PASDIRNVKEMIAPKLGLKYEE-------------VKIIFAGKELEDTTII- 660 (816)
Q Consensus 605 M~V~Vk~~------~-g-~t~~v~V~--~~~TV~~LK~~I~~~~Gip~~~-------------qrLif~Gk~L~d~~tL- 660 (816)
|+|.|+.. . | ....++++ +..||.+|...+.++.+-.... ..+.-+|.-.+ .+
T Consensus 2 M~i~V~~fa~lre~~~g~~~~~~~l~~~~~~Tv~~L~~~L~~~~~~~~~~l~~~~~~~~lr~~~~v~VN~~~~~---~~~ 78 (99)
T 2qjl_A 2 VNVKVEFLGGLDAIFGKQRVHKIKMDKEDPVTVGDLIDHIVSTMINNPNDVSIFIEDDSIRPGIITLINDTDWE---LEG 78 (99)
T ss_dssp EEEEEEEETTGGGGTTTCCEEEEEECSCSCCBHHHHHHHHHHHTCSSGGGHHHHEETTEECTTEEEEETTEEGG---GGT
T ss_pred cEEEEEEchHHHHHhCCCcEEEEecCCCCCCcHHHHHHHHHHHCchhhHHHhhhccCCccccCeEEEECCEEcc---ccC
Confidence 66777654 3 3 35667776 6789999999998776311111 12334444211 11
Q ss_pred -cccCCCCCCEEEEe-eCCCC
Q psy15035 661 -SECDLGQQSILHAV-KSSPE 679 (816)
Q Consensus 661 -~~~~I~~~stl~lv-r~~gg 679 (816)
.++-|++|+.|.++ +..||
T Consensus 79 ~~d~~L~dgDeVa~~Ppv~GG 99 (99)
T 2qjl_A 79 EKDYILEDGDIISFTSTLHGG 99 (99)
T ss_dssp GGGCBCCTTCEEEEEECTTCC
T ss_pred CCCcCcCCCCEEEEECCCCCC
Confidence 25568899999999 66655
No 221
>4eut_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: BX7; 2.60A {Homo sapiens}
Probab=50.79 E-value=29 Score=37.37 Aligned_cols=62 Identities=10% Similarity=0.165 Sum_probs=47.0
Q ss_pred CCceEEEEcCCCCcHHHHHHHHhhhhCCCCCCeEEEECCeec--CCCccccccCCCC-CCEEEEe
Q psy15035 613 TGNTVCVNLDPASDIRNVKEMIAPKLGLKYEEVKIIFAGKEL--EDTTIISECDLGQ-QSILHAV 674 (816)
Q Consensus 613 ~g~t~~v~V~~~~TV~~LK~~I~~~~Gip~~~qrLif~Gk~L--~d~~tL~~~~I~~-~stl~lv 674 (816)
.-....+.+.+..|+.++++.+++.+|+++++|.++|.+..+ +...+-..|.-+. .+-+.++
T Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~t~i~~~~q~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 384 (396)
T 4eut_A 320 QMTAHKIYIHSYNTATIFHELVYKQTKIISSNQELIYEGRRLVLEPGRLAQHFPKTTEENPIFVV 384 (396)
T ss_dssp TTEEEEEEECTTCBHHHHHHHHHHHHCCCSTTEEEESSSSEECCCSSCBTTSSCCCCSSSCEEEE
T ss_pred cceEEEEEcCchhHHHHHHHHHHHhcCCChhhhHHHhcCCCCCCCCCCccccCCCCCCCCCeEEE
Confidence 445677899999999999999999999999999999998443 4455555555432 3445555
No 222
>2q5w_D Molybdopterin converting factor, subunit 1; MOCO, MPT synthase, MOAD, MOAE, transferase, molybdenum cofactor biosynthesis; 2.00A {Staphylococcus aureus} PDB: 2qie_B*
Probab=48.92 E-value=26 Score=28.59 Aligned_cols=59 Identities=5% Similarity=0.084 Sum_probs=41.6
Q ss_pred ceEEEEcCCCCcHHHHHHHHhhhhCCCCCCe--EEEECCeecCCCccccccCCCCCCEEEEe-eCCCC
Q psy15035 615 NTVCVNLDPASDIRNVKEMIAPKLGLKYEEV--KIIFAGKELEDTTIISECDLGQQSILHAV-KSSPE 679 (816)
Q Consensus 615 ~t~~v~V~~~~TV~~LK~~I~~~~Gip~~~q--rLif~Gk~L~d~~tL~~~~I~~~stl~lv-r~~gg 679 (816)
....++++...||.+|.+.+.....- .... .+..+|+....+ .-+++|+.|.++ ...||
T Consensus 16 ~~~~~~~~~~~tv~~ll~~l~~~~p~-~~~v~~~v~vNg~~v~~~-----~~L~~gD~V~i~ppv~GG 77 (77)
T 2q5w_D 16 AQEDIVLEQALTVQQFEDLLFERYPQ-INNKKFQVAVNEEFVQKS-----DFIQPNDTVALIPPVSGG 77 (77)
T ss_dssp SEEECCCSSCEEHHHHHHHHHHHCGG-GTTCCCEEEETTEEECTT-----SEECTTCEEEEECSCCCC
T ss_pred CEEEEECCCCCCHHHHHHHHHHHCcc-hhcceEEEEECCEECCCC-----CCcCCCCEEEEECCCCCC
Confidence 34567777788999999998766320 1233 677899887653 457789999999 55554
No 223
>3ivf_A Talin-1; FERM domain, cell membrane, cell projection, cytoskeleton, M phosphoprotein, cell adhesion, structural protein; 1.94A {Mus musculus} PDB: 2kma_A 2kc1_A
Probab=47.50 E-value=40 Score=36.36 Aligned_cols=72 Identities=11% Similarity=0.204 Sum_probs=55.8
Q ss_pred CceEEEEEecCCceEEEEcCCCCcHHHHHHHHhhhhCCCCCC-eEEEECC---------eecCCCccccccCCCCCCEEE
Q psy15035 603 NTLMINIKSNTGNTVCVNLDPASDIRNVKEMIAPKLGLKYEE-VKIIFAG---------KELEDTTIISECDLGQQSILH 672 (816)
Q Consensus 603 ~~M~V~Vk~~~g~t~~v~V~~~~TV~~LK~~I~~~~Gip~~~-qrLif~G---------k~L~d~~tL~~~~I~~~stl~ 672 (816)
..+.+.|..++|....+.|++++|+.++-..|..+.|+...+ .-|.+.. .-|+.+.++.+.+.....+++
T Consensus 84 ~~~~~~V~l~dg~~~~~~vd~~tt~~el~~~v~~~l~L~e~~~FgL~~~~~~~~~~~~~~wL~~~k~l~~q~~~~~~~l~ 163 (371)
T 3ivf_A 84 KQRPLKIRMLDGTVKTIMVDDSKTVTDMLMTICARIGITNHDEYSLVRELMEEKKDDELNWLDHGRTLREQGVEEHETLL 163 (371)
T ss_dssp CEEEEEEECTTSCEEEEEEETTSBHHHHHHHHHHHTTCSCGGGEEEECCC----------CCCTTSBTGGGTCCTTCEEE
T ss_pred ceeEEEEECcCCCEEEEEECCCCCHHHHHHHHHHHcCCCCccccEEEEEecccccchHHHHHhcCchhHhhCCCCCceEE
Confidence 457889999999999999999999999999999999986533 4555432 335667778777776667777
Q ss_pred Ee
Q psy15035 673 AV 674 (816)
Q Consensus 673 lv 674 (816)
+.
T Consensus 164 fr 165 (371)
T 3ivf_A 164 LR 165 (371)
T ss_dssp EE
T ss_pred EE
Confidence 65
No 224
>2l52_A Methanosarcina acetivorans SAMP1 homolog; beta-grAsp fold, protein binding, E1-like, SAMP activator, ELSA, adenylation, ubiquitin; NMR {Methanosarcina acetivorans}
Probab=44.43 E-value=83 Score=27.12 Aligned_cols=72 Identities=18% Similarity=0.239 Sum_probs=44.9
Q ss_pred ceEEEEEecC------Cc-eEEEEcCCCCcHHHHHHHHhhhhC-CCC---------CCe-------EEEECCeecCCCcc
Q psy15035 604 TLMINIKSNT------GN-TVCVNLDPASDIRNVKEMIAPKLG-LKY---------EEV-------KIIFAGKELEDTTI 659 (816)
Q Consensus 604 ~M~V~Vk~~~------g~-t~~v~V~~~~TV~~LK~~I~~~~G-ip~---------~~q-------rLif~Gk~L~d~~t 659 (816)
.|+|.|+... |. .+.++ ..||.+|.+.+..+.. +.. ... .+..+|+......
T Consensus 3 mm~v~V~~fa~lr~~~g~~~~~l~---~~tv~~ll~~L~~~~p~l~~~l~~~g~l~~~v~~~~~~~~v~VNg~~v~~~~- 78 (99)
T 2l52_A 3 MAEVKVKLFANLREAAGTPELPLS---GEKVIDVLLSLTDKYPALKYVIFEKGDEKSEILILCGSINILINGNNIRHLE- 78 (99)
T ss_dssp CCEEEEEECTHHHHHHSSSEEEEE---CSSHHHHHHHHHHHCGGGTTTSBCSCCTTSSCCCBCSSCEEEETTSCGGGTT-
T ss_pred ceEEEEEEeHHHHHHhCCCeEEEe---CCcHHHHHHHHHHHChhHHHHHhcccccccceeccccccEEEECCEEccccC-
Confidence 3778887752 32 44444 5799999999887641 111 023 5777887663221
Q ss_pred ccccCCCCCCEEEEe-eCCCC
Q psy15035 660 ISECDLGQQSILHAV-KSSPE 679 (816)
Q Consensus 660 L~~~~I~~~stl~lv-r~~gg 679 (816)
-.+.-+++|+.|.++ ...||
T Consensus 79 ~~~~~L~~gD~V~i~ppv~GG 99 (99)
T 2l52_A 79 GLETLLKDSDEIGILPPVSGG 99 (99)
T ss_dssp STTSCCCTTEEEEEECCCSCC
T ss_pred CCCCCCCCCCEEEEECCCCCC
Confidence 124457899999999 55554
No 225
>1wfp_A Zinc finger (AN1-like) family protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=43.89 E-value=13 Score=30.85 Aligned_cols=37 Identities=27% Similarity=0.720 Sum_probs=25.7
Q ss_pred eeccCcCCCceeEecCCCCCccccccCcceeccccCCCCCCCCcccceeEeecccccccCCCCCcccc
Q psy15035 728 RVRCAQCKSGAVIVDRDPQSWSDVLEPRQISCHCTEEHCTTGPVSWAEFYFKCAQHVSANMNQVDECL 795 (816)
Q Consensus 728 Rv~C~~C~~~~~t~~~~p~~w~dvl~~~ri~g~c~~~~c~~~~~~~a~f~fkc~~h~~~~~~~~~~~~ 795 (816)
..||..|+-..- -+...|. |.+ .| |+.|+.. |+|.|.
T Consensus 25 ~~RC~~C~kkvg----------------L~~f~Cr---Cg~------~F---Cs~HRy~---e~H~C~ 61 (74)
T 1wfp_A 25 ATRCLSCNKKVG----------------VTGFKCR---CGS------TF---CGTHRYP---ESHECQ 61 (74)
T ss_dssp CCBCSSSCCBCT----------------TTCEECT---TSC------EE---CTTTCST---TTSCCC
T ss_pred CccchhhcCccc----------------ccceEec---cCC------Ee---ccccCCC---cCCCCc
Confidence 478999986311 2356673 755 78 9999997 577764
No 226
>1rws_A Hypothetical protein PF1061; residual dipolar couplings, structural genomics, unknown FUN; NMR {Pyrococcus furiosus} SCOP: d.15.3.2 PDB: 1sf0_A
Probab=43.71 E-value=11 Score=31.26 Aligned_cols=53 Identities=11% Similarity=0.208 Sum_probs=39.9
Q ss_pred EEEcCCCCcHHHHHHHHhhhhCCCCCCeEEEECCeecCCCccccccCCCCCCEEEEe-eCCCC
Q psy15035 618 CVNLDPASDIRNVKEMIAPKLGLKYEEVKIIFAGKELEDTTIISECDLGQQSILHAV-KSSPE 679 (816)
Q Consensus 618 ~v~V~~~~TV~~LK~~I~~~~Gip~~~qrLif~Gk~L~d~~tL~~~~I~~~stl~lv-r~~gg 679 (816)
.++++...||.+|.+.+ ++|+....+..+|+....+ .-|++|+.|-++ ...||
T Consensus 24 ~~~~~~~~Tv~dLl~~L----~~~~~~v~VavNg~~v~~~-----~~L~dGD~V~i~ppv~GG 77 (77)
T 1rws_A 24 EIEWREGMKVRDILRAV----GFNTESAIAKVNGKVVLED-----DEVKDGDFVEVIPVVSGG 77 (77)
T ss_dssp CCCCCSSCCHHHHHHTT----TCSSCSSCEEETTEEECSS-----SCCCSSCCCBCSCCCCCC
T ss_pred EEECCCCCcHHHHHHHh----CCCCcCEEEEECCEECCCC-----CCcCCCCEEEEEcccccC
Confidence 45667778999998764 5777777788999988764 567889999888 44444
No 227
>2c7h_A RBBP6, retinoblastoma-binding protein 6, isoform 3; P53-associated, mRNA processing, splicing-associated, oesophageal cancer; NMR {Homo sapiens}
Probab=42.80 E-value=42 Score=28.70 Aligned_cols=70 Identities=16% Similarity=0.148 Sum_probs=44.7
Q ss_pred eEEEEEecCCce-EEEEcC-CCCcHHHHHHHHhhhhCCCCCCeEE-EECC---eecCCCccccccCCCCCCEEEEeeCCC
Q psy15035 605 LMINIKSNTGNT-VCVNLD-PASDIRNVKEMIAPKLGLKYEEVKI-IFAG---KELEDTTIISECDLGQQSILHAVKSSP 678 (816)
Q Consensus 605 M~V~Vk~~~g~t-~~v~V~-~~~TV~~LK~~I~~~~Gip~~~qrL-if~G---k~L~d~~tL~~~~I~~~stl~lvr~~g 678 (816)
..|+-|+-..+. .+|.++ ..-||.+||..|..+.++-..+.-| +|+. .+..|+. .-|..+++|.+-|.|.
T Consensus 7 S~V~YKFkS~k~~~~v~fdG~~Isv~dLKr~I~~~~kl~~~dfDL~i~na~T~eeY~Dd~----~lIprnssViVrRvP~ 82 (86)
T 2c7h_A 7 SCVHYKFSSKLNYDTVTFDGLHISLCDLKKQIMGREKLKAADCDLQITNAQTKEEYTDDN----ALIPKNSSVIVRRIPI 82 (86)
T ss_dssp EEEEEEETTCSSEEEEEESSSEEEHHHHHHHHHHHHTCCTTTEEEEEEESSSCCEECSTT----CEEETTCCEEEEEEEC
T ss_pred eEEEEEEeecCCcceEEEcCCEEEHHHHHHHHHHHhCCCCCcccEEEeCCCCCCccCCCc----eEEecCCEEEEEeccC
Confidence 467888876654 467777 4669999999999998876656655 3432 2222322 1245577776666544
No 228
>2cu3_A Unknown function protein; thermus thermophilus HB8, structural genomics, riken structu genomics/proteomics initiative, RSGI, NPPSFA; 1.70A {Thermus thermophilus} SCOP: d.15.3.2 PDB: 2htm_E
Probab=42.13 E-value=54 Score=25.82 Aligned_cols=59 Identities=14% Similarity=0.268 Sum_probs=41.2
Q ss_pred CCceEEEEcCCCCcHHHHHHHHhhhhCCCCCCeEEEECCeecCCCccccccCCCCCCEEEEe-eCCCC
Q psy15035 613 TGNTVCVNLDPASDIRNVKEMIAPKLGLKYEEVKIIFAGKELEDTTIISECDLGQQSILHAV-KSSPE 679 (816)
Q Consensus 613 ~g~t~~v~V~~~~TV~~LK~~I~~~~Gip~~~qrLif~Gk~L~d~~tL~~~~I~~~stl~lv-r~~gg 679 (816)
+|+.+ ++ ...||.+|.+.+ ++++....+..+|.....+ .-.+.-+++|+.|.++ ...||
T Consensus 5 Ng~~~--~~-~~~tv~~ll~~l----~~~~~~v~vavN~~~v~~~-~~~~~~L~dgD~v~i~~~V~GG 64 (64)
T 2cu3_A 5 NGEPR--PL-EGKTLKEVLEEM----GVELKGVAVLLNEEAFLGL-EVPDRPLRDGDVVEVVALMQGG 64 (64)
T ss_dssp TTEEE--CC-TTCCHHHHHHHH----TBCGGGEEEEETTEEEEGG-GCCCCCCCTTCEEEEEECCCC-
T ss_pred CCEEE--Ec-CCCcHHHHHHHc----CCCCCcEEEEECCEECCcc-ccCCcCCCCCCEEEEEeecccC
Confidence 56654 45 668999999876 5677777778899877532 2334567889999999 45544
No 229
>2g1e_A Hypothetical protein TA0895; MOAD, molybdopterin, transferase; NMR {Thermoplasma acidophilum} PDB: 2k22_A
Probab=41.46 E-value=74 Score=26.47 Aligned_cols=60 Identities=12% Similarity=0.246 Sum_probs=39.9
Q ss_pred EEcCCCCcHHHHHHHHhhhhC------C-----CCCCeEEEECCeecCCCccccccCCCCCCEEEEe-eCCCC
Q psy15035 619 VNLDPASDIRNVKEMIAPKLG------L-----KYEEVKIIFAGKELEDTTIISECDLGQQSILHAV-KSSPE 679 (816)
Q Consensus 619 v~V~~~~TV~~LK~~I~~~~G------i-----p~~~qrLif~Gk~L~d~~tL~~~~I~~~stl~lv-r~~gg 679 (816)
++++...||.+|.+.+..+.. + ......+..+|+...... -.+.-+++|+.|.++ ...||
T Consensus 19 ~~~~~~~tv~~ll~~l~~~~p~~~~~~l~~~~g~~~~v~v~vN~~~v~~~~-~~~~~l~~gD~V~i~ppv~GG 90 (90)
T 2g1e_A 19 ETFNGISKISELLERLKVEYGSEFTKQMYDGNNLFKNVIILVNGNNITSMK-GLDTEIKDDDKIDLFPPVAGG 90 (90)
T ss_dssp EEESSCCBHHHHHHHHHHHSCHHHHHHHCCSSCSTTTCEEEESSSBGGGTC-SSSCBCCTTCEEEEECCTTCC
T ss_pred EEcCCCCcHHHHHHHHHHHCcchhhhccccccCcCcceEEEECCEEccccC-CCCcCCCCCCEEEEeCCCCCC
Confidence 455566899999999887641 1 123456778888765221 134458899999999 55554
No 230
>3qij_A Protein 4.1; cytoskeleton, structural genomics, structural genomics conso SGC; 1.80A {Homo sapiens} PDB: 1gg3_A 3bin_A 2he7_A 2rq1_A
Probab=40.61 E-value=30 Score=36.28 Aligned_cols=74 Identities=8% Similarity=-0.056 Sum_probs=53.0
Q ss_pred CCCceEEEEEecCCceEEEEcCCCCcHHHHHHHHhhhhCCCCCC-eEEEEC---C--eecCCCccccccCCCCCCEEEEe
Q psy15035 601 PDNTLMINIKSNTGNTVCVNLDPASDIRNVKEMIAPKLGLKYEE-VKIIFA---G--KELEDTTIISECDLGQQSILHAV 674 (816)
Q Consensus 601 ~~~~M~V~Vk~~~g~t~~v~V~~~~TV~~LK~~I~~~~Gip~~~-qrLif~---G--k~L~d~~tL~~~~I~~~stl~lv 674 (816)
....+.+.|..++|....++|++.+|+.+|-..|..+.|+...+ .-|.|. | .-|+.+.++.+.......++++.
T Consensus 14 ~~~~~~~~V~lldgt~~~~~vd~~tt~~el~~~v~~~l~L~e~~~FgL~~~~~~~~~~wLd~~k~i~~q~~~~~~~l~fr 93 (296)
T 3qij_A 14 LYFQGHCKVSLLDDTVYECVVEKHAKGQDLLKRVCEHLNLLEEDYFGLAIWDNATSKTWLDSAKEIKKQVRGVPWNFTFN 93 (296)
T ss_dssp ---CCEEEEECTTSCEEEEECCTTCBHHHHHHHHHHHHTCSSGGGEEEEEEEETTEEEECCTTSBHHHHC---CCEEEEE
T ss_pred CCceEEEEEEccCCCEEEEEECCCCCHHHHHHHHHHHcCCCCcceeEEEEEcCCCccchhccchhHHHhcCCCCcEEEEE
Confidence 45578899999999999999999999999999999999987654 445543 2 23667777776654444555554
No 231
>1x4v_A Hypothetical protein LOC130617; ZF-AN1 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=38.65 E-value=10 Score=30.54 Aligned_cols=37 Identities=22% Similarity=0.763 Sum_probs=27.7
Q ss_pred eccCc--CCCceeEecCCCCCccccccCcceeccccCCCCCCCCcccceeEeecccccccCCCCCccccc
Q psy15035 729 VRCAQ--CKSGAVIVDRDPQSWSDVLEPRQISCHCTEEHCTTGPVSWAEFYFKCAQHVSANMNQVDECLP 796 (816)
Q Consensus 729 v~C~~--C~~~~~t~~~~p~~w~dvl~~~ri~g~c~~~~c~~~~~~~a~f~fkc~~h~~~~~~~~~~~~~ 796 (816)
.+|+. |++..| +...|. .|.+ .| |++|+.. |++.|..
T Consensus 13 ~~Cs~~~Ck~~~l-----------------l~f~C~--~C~~------~F---C~~HR~~---e~H~C~~ 51 (63)
T 1x4v_A 13 NKCERAGCRQREM-----------------MKLTCE--RCSR------NF---CIKHRHP---LDHDCSG 51 (63)
T ss_dssp CCCCSTTCCCCCS-----------------SCCBCS--SSCC------BC---CHHHHST---TSSCCCS
T ss_pred CCCCccCCCCCCc-----------------cceECC--CCCc------cc---CcccCCc---cCCcCCC
Confidence 57886 998543 355788 7866 89 9999997 6887754
No 232
>2kmm_A Guanosine-3',5'-BIS(diphosphate) 3'- pyrophosphohydrolase; methods development, TGS domain, predominantly beta-sheet structure; NMR {Porphyromonas gingivalis}
Probab=38.38 E-value=68 Score=25.54 Aligned_cols=61 Identities=10% Similarity=0.084 Sum_probs=41.4
Q ss_pred eEEEEEecCCceEEEEcCCCCcHHHHHHHHhhhhCCCCCCeEEEECCeecCCCccccccCCCCCCEEEEe
Q psy15035 605 LMINIKSNTGNTVCVNLDPASDIRNVKEMIAPKLGLKYEEVKIIFAGKELEDTTIISECDLGQQSILHAV 674 (816)
Q Consensus 605 M~V~Vk~~~g~t~~v~V~~~~TV~~LK~~I~~~~Gip~~~qrLif~Gk~L~d~~tL~~~~I~~~stl~lv 674 (816)
|.|+|...+|+. .+++...|+.++-..+....+ ..-.-...+|+..+-+ +-|.+|+.|.++
T Consensus 1 m~i~i~~p~g~~--~~~~~g~T~~dla~~i~~~l~--~~~vaa~vNg~lvdl~-----~~L~~~~~Veiv 61 (73)
T 2kmm_A 1 MEVMVFTPKGEI--KRLPQGATALDFAYSLHSDLG--DHCIGAKVNHKLVPLS-----YVLNSGDQVEVL 61 (73)
T ss_dssp CCEEEECTTCCE--EEECTTCBHHHHHHHHCSHHH--HTEEEEEETTEECCTT-----CBCCSSSBEEEE
T ss_pred CeEEEEcCCCCE--EEcCCCCcHHHHHHHHhhccc--cceEEEEECCEEeCCC-----cCcCCCCEEEEE
Confidence 667887777875 566778999999888754332 2222334688766654 455578889888
No 233
>1wgr_A Growth factor receptor-bound protein 7; RA domain, GRB7, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.15.1.5
Probab=38.14 E-value=76 Score=27.86 Aligned_cols=73 Identities=18% Similarity=0.201 Sum_probs=52.3
Q ss_pred CCceEEEEEecCCceEEEEcCCCCcHHHHHHHHhhhhCCCCCCeEEEE-------CCeecCCCcc----ccccCCCCCCE
Q psy15035 602 DNTLMINIKSNTGNTVCVNLDPASDIRNVKEMIAPKLGLKYEEVKIIF-------AGKELEDTTI----ISECDLGQQSI 670 (816)
Q Consensus 602 ~~~M~V~Vk~~~g~t~~v~V~~~~TV~~LK~~I~~~~Gip~~~qrLif-------~Gk~L~d~~t----L~~~~I~~~st 670 (816)
.+...|.|=..+|.+-+|.|++.+|+.++-+.+..+.+...+.-.=+| --+.++|... ++.+.+..+..
T Consensus 7 ~~k~vvkvf~~Dgssksi~V~~~~Ta~dv~~~L~~K~~~~~~~~WaLvE~~P~L~~ER~~EDHE~vvevl~~W~~~s~nr 86 (100)
T 1wgr_A 7 GRPHVVKVYSEDGACRSVEVAAGATARHVCEMLVQRAHALSDETWGLVECHPHLALERGLEDHESVVEVQAAWPVGGDSR 86 (100)
T ss_dssp CSCEEEEEEETTSCEEEEEECTTCCHHHHHHHHHCSSSCCCCCCCCEEEEETTTTEEEEECSSSCHHHHHTTSCSSSCCE
T ss_pred CCCEEEEEEecCCCEEEEEECCCCcHHHHHHHHHHHcCCCCCCCeEEEEecCCCCcEEeccCchhHHHHHhhCccCCCcE
Confidence 345666666678999999999999999999999999987765543333 2244666553 45566666666
Q ss_pred EEEe
Q psy15035 671 LHAV 674 (816)
Q Consensus 671 l~lv 674 (816)
+...
T Consensus 87 ~~F~ 90 (100)
T 1wgr_A 87 FVFR 90 (100)
T ss_dssp EEEC
T ss_pred EEEe
Confidence 6665
No 234
>1ip9_A BEM1 protein; ubiquitin alpha/beta roll, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 1ipg_A 2kfk_A
Probab=37.39 E-value=71 Score=27.21 Aligned_cols=43 Identities=16% Similarity=0.301 Sum_probs=34.9
Q ss_pred CceEEEEEecCCceEEEEcCCCCcHHHHHHHHhhhhCCCCCCeEEE
Q psy15035 603 NTLMINIKSNTGNTVCVNLDPASDIRNVKEMIAPKLGLKYEEVKII 648 (816)
Q Consensus 603 ~~M~V~Vk~~~g~t~~v~V~~~~TV~~LK~~I~~~~Gip~~~qrLi 648 (816)
+.|+|.|=. .+-.|.+.|+++-+..+|+.+|..+..+. ++.++
T Consensus 11 ~~~KVK~yy-~DDIiAIrvP~di~~~~L~dKi~~RLk~~--~~~l~ 53 (85)
T 1ip9_A 11 KTTKIKFYY-KDDIFALMLKGDTTYKELRSKIAPRIDTD--NFKLQ 53 (85)
T ss_dssp CCEEEEECB-TTCCEEEEECSCCCHHHHHHHHHHHHTSS--CEEEE
T ss_pred CceEEEEEe-cCcEEEEECCCCCCHHHHHHHHHHHhccc--ceEEE
Confidence 457777755 46789999999999999999999999993 44444
No 235
>2kmc_A Fermitin family homolog 1; kindlin, cytoskeleton, integrin, N-terminal, talin, cell adhesion, cell junction, cell membrane, cell projection; NMR {Mus musculus}
Probab=37.18 E-value=1.1e+02 Score=26.85 Aligned_cols=71 Identities=11% Similarity=0.266 Sum_probs=54.6
Q ss_pred ceEEEEEecCC---ceEEEEcCCCCcHHHHHHHHhhhhCCCCC--CeEEEECCe---ecCCCccccccCCCCCCEEEEe
Q psy15035 604 TLMINIKSNTG---NTVCVNLDPASDIRNVKEMIAPKLGLKYE--EVKIIFAGK---ELEDTTIISECDLGQQSILHAV 674 (816)
Q Consensus 604 ~M~V~Vk~~~g---~t~~v~V~~~~TV~~LK~~I~~~~Gip~~--~qrLif~Gk---~L~d~~tL~~~~I~~~stl~lv 674 (816)
.+.|+|...+. ...++.|..+.-|+.+.-++-++..++.+ +--|-+--| .|+-..||..|||+.++.++..
T Consensus 19 eL~V~V~d~~~~~~~~~~lrV~GdlHIGGvmlklVEki~i~~dWSDhaLWW~~k~~WLlkt~~tLDkygiqADa~L~ft 97 (102)
T 2kmc_A 19 ELVVRVDHANGEQQTEITLRVSGDLHIGGVMLKLVEQMNIAQDWSDYALWWEQKRCWLLKTHWTLDKCGVQADANLLFT 97 (102)
T ss_dssp EEEEEEECTTSSCEEEEEEEECSCCBHHHHHHHHHHHHCCSSCCSSEEEEETTTTEEECCTTSBHHHHTCCTTSCEEEE
T ss_pred EEEEEEecCCcccCccEEEEEeeccccchhhhhhhhhcccccchHHhhhhhhhhchhhhhhhhhhhhhceeeeeeeecc
Confidence 36777877543 56889999999999999999988776543 444554332 3578899999999999999987
No 236
>2inc_C TOUB protein; DIIRON, 4-helix bundle, carboxylate bridge, metalloenzyme, oxidoreductase; HET: P6G; 1.85A {Pseudomonas stutzeri} SCOP: d.15.12.1 PDB: 2ind_C* 3n20_C* 1t0r_C 1t0s_C 1t0q_C* 3n1x_C 3n1y_C* 3n1z_C* 2rdb_C* 3rn9_C* 3rna_C 3rnb_C 3rnc_C 3rne_C 3rnf_C* 3rng_C
Probab=34.32 E-value=1.8e+02 Score=24.55 Aligned_cols=59 Identities=15% Similarity=0.155 Sum_probs=47.9
Q ss_pred eEEEEcCCCCcHHHHHHHHhhhh-C--C---CCCCeEEEECC--eecCCCccccccCCCCCCEEEEe
Q psy15035 616 TVCVNLDPASDIRNVKEMIAPKL-G--L---KYEEVKIIFAG--KELEDTTIISECDLGQQSILHAV 674 (816)
Q Consensus 616 t~~v~V~~~~TV~~LK~~I~~~~-G--i---p~~~qrLif~G--k~L~d~~tL~~~~I~~~stl~lv 674 (816)
..-|.|+.++|+.++-++++.-. | + |-.-.++.+.| +.|..+.|+++.||.+-..|.+.
T Consensus 14 ~~LV~VDt~dTmdqVA~kvA~HsVGrRV~p~p~~~~rVr~~G~~~~~pr~~tvae~gl~P~e~vev~ 80 (83)
T 2inc_C 14 IQLVPVDTEDTMDQVAEKCAYHSINRRVHPQPEKILRVRRHEDGTLFPRGMIVSDAGLRPTETLDII 80 (83)
T ss_dssp EEEEEECTTCBHHHHHHHHHTTTBTTTBCCCTTSEEEEEETTTCCEECTTCBGGGSCCCTTCEEEEE
T ss_pred EEEEEecCCCcHHHHHHHHhhhhcceecCCCCCCeEEEEecCCccCCCCCCEeeccCCCCceEEEEE
Confidence 35588999999999999998764 3 3 22246788999 88999999999999998887765
No 237
>1q1o_A Cell division control protein 24; PB1 domain, PCCR, PC motif, OPCA motif, yeast, cell polarity, protein-protein interaction; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 2kfj_A 2kfk_B
Probab=32.17 E-value=51 Score=28.88 Aligned_cols=39 Identities=10% Similarity=0.214 Sum_probs=33.1
Q ss_pred CceEEEEEecC-------CceEEEEcCCCCcHHHHHHHHhhhhCCC
Q psy15035 603 NTLMINIKSNT-------GNTVCVNLDPASDIRNVKEMIAPKLGLK 641 (816)
Q Consensus 603 ~~M~V~Vk~~~-------g~t~~v~V~~~~TV~~LK~~I~~~~Gip 641 (816)
++|+|.|...+ +.++.+-|+++.+-.+|..+|..+.+++
T Consensus 4 ~sikVKv~y~~~~~~~~~~d~~~i~V~~~i~f~~L~~kI~~Kl~~~ 49 (98)
T 1q1o_A 4 GSILFRISYNNNSNNTSSSEIFTLLVEKVWNFDDLIMAINSKISNT 49 (98)
T ss_dssp SCEEEEEEECSSCSSCCCCEEEEEEECTTCCHHHHHHHHHHHHHHH
T ss_pred ccEEEEEEecCcccccccCcEEEEEecCCCCHHHHHHHHHHHHcCC
Confidence 56778887653 5578999999999999999999999876
No 238
>3hjl_A Flagellar motor switch protein FLIG; armadillo repeat motif, superhelix, conformational plasticit repeat, torque generation; 2.40A {Aquifex aeolicus}
Probab=31.12 E-value=4.6e+02 Score=27.79 Aligned_cols=154 Identities=18% Similarity=0.204 Sum_probs=76.9
Q ss_pred hcCCHHHHHHHHHHHhcCcce--eeccCCcchhHHhhcC--ChhHHHHHHHHHHHHHHHhhhhhcccCCcchhhhHHHhh
Q psy15035 92 QVASPAQKLAMRQELYGGLYE--STGDKKINCLGDIFEQ--SPEMKTAILSVTKKTILKSLQKTQVTGSALLHAVLLDFI 167 (816)
Q Consensus 92 ~~at~eQr~~Li~e~yg~~~~--l~kd~~~~~l~~ile~--~pekk~~Il~~l~~~l~~lv~K~~~~~~~ivh~vl~ey~ 167 (816)
..-++++...++.||+...-. .....+ ..+.++|+. .+++-..|++.+...... + .|+++
T Consensus 50 ~~v~~~~~~~Vl~EF~~~~~~~~~i~~gg-~~~~~~L~~aLg~~~A~~ll~~i~~~~~~---~------------~~~~L 113 (329)
T 3hjl_A 50 ESVPEEEIENIAEELLDEIKKAGIKIKKP-EEFIENIKKVIPPTLAEKFRGILELGDAE---K------------ILKEI 113 (329)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHTTCCCSCH-HHHHHHHHHHSCCCHHHHHHHHHHHHHHH---H------------HHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHhcCCCCCch-HHHHHHHHHhCCHHHHHHHHHHHhccccC---C------------HHHHH
Confidence 356788888889999754221 111224 667788887 456777777776654210 0 12333
Q ss_pred hcCCChhhHHHHHHHhCCCCccccccCcChHHHHHHHHhhcCHHHHHHHHHHH------------------HHHHHHHh-
Q psy15035 168 SHSSDSPDLMEVLEMLAPLPLLPFVHSKAGASVAMHIIWNATNKLKKKIVKEL------------------KGHLREVA- 228 (816)
Q Consensus 168 ~~~~~~~~~~~iie~l~~~~l~~L~~tk~Gs~Vv~~cl~~~~~kdRk~Iik~l------------------k~~v~~La- 228 (816)
...++ +....++..=+++ ...++-.+=-...+-..|.+-+++.|..++..+ ...+..+.
T Consensus 114 ~~~dp-~~la~~i~~EhPQ-tiAlILs~L~p~~AA~vL~~Lp~~~r~ev~~Ria~l~~v~p~~l~~le~~L~~~l~~~~~ 191 (329)
T 3hjl_A 114 EKVDS-RILASLLKNEHPQ-TIALFLSQLSPKKSAEIIQNLPEELKKEVVKRIATLENVNVQYVKELAQILLEEISSLGA 191 (329)
T ss_dssp HTSCH-HHHHHHHTTSCHH-HHHHHHTTSCHHHHHHHHHTSCHHHHHHHHHHHHHCSCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HCCCH-HHHHHHHHhCCHH-HHHHHHHcCCHHHHHHHHHhCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHHHHhccc
Confidence 33333 2222222222222 222222222223333344444444444444433 33333321
Q ss_pred ---hCcCchHHHHHHHccCCchHHHHHHHHHHHHHhHHhH
Q psy15035 229 ---TSEFGHLVLVTLLDNVDDTLLLKKALLPELLAEVVPL 265 (816)
Q Consensus 229 ---~d~~G~~Vlq~~l~~~DDt~l~~k~Iv~eL~~~l~~L 265 (816)
...-|...+-.+|..+|-.. .+.|+..|...=+++
T Consensus 192 ~~~~~~gG~~~vA~ILN~~d~~~--e~~il~~L~~~dpel 229 (329)
T 3hjl_A 192 KEALKLEGTAVAAELLNTLDKET--RELILQSIGQEDPLL 229 (329)
T ss_dssp HHSCCCCHHHHHHHHHHHSCHHH--HHHHHHHHHHHCHHH
T ss_pred ccccccccHHHHHHHHhcCChHH--HHHHHHHHHHhCHHH
Confidence 23556778888888887553 566777776644443
No 239
>2ylm_A Ubiquitin carboxyl-terminal hydrolase 7; UBL; 2.70A {Homo sapiens}
Probab=30.58 E-value=28 Score=39.85 Aligned_cols=32 Identities=6% Similarity=0.237 Sum_probs=29.4
Q ss_pred EEEcCCCCcHHHHHHHHhhhhCCCCCCeEEEE
Q psy15035 618 CVNLDPASDIRNVKEMIAPKLGLKYEEVKIIF 649 (816)
Q Consensus 618 ~v~V~~~~TV~~LK~~I~~~~Gip~~~qrLif 649 (816)
++.|..++|+.+|++.|++..|+|+++|||..
T Consensus 39 ~~rv~k~~~~~~l~~~va~~lg~~~~~~RlW~ 70 (530)
T 2ylm_A 39 VFKVLKNSSLAEFVQSLSQTMGFPQDQIRLWP 70 (530)
T ss_dssp EEEEETTSBHHHHHHHHHHHHTSCGGGEEEEE
T ss_pred eEEEcCcCCHHHHHHHHHHHhCcCcccEEEEE
Confidence 56888999999999999999999999999963
No 240
>1y8x_B Ubiquitin-activating enzyme E1C; ubiquitin-conjugating enzyme E2 M, ligase; 2.40A {Homo sapiens} SCOP: c.111.1.2 PDB: 3fn1_A
Probab=30.35 E-value=54 Score=28.68 Aligned_cols=59 Identities=14% Similarity=0.247 Sum_probs=40.8
Q ss_pred eEEEEcCCCCcHHHHHHHHhhhhCCCCCCeEEEEC----Cee--------cC------CCccccccCCCCCCEEEEe
Q psy15035 616 TVCVNLDPASDIRNVKEMIAPKLGLKYEEVKIIFA----GKE--------LE------DTTIISECDLGQQSILHAV 674 (816)
Q Consensus 616 t~~v~V~~~~TV~~LK~~I~~~~Gip~~~qrLif~----Gk~--------L~------d~~tL~~~~I~~~stl~lv 674 (816)
...++|++++|..+|-+.+.+.-...-..=-|-++ |+- |+ -+.+|.+.|+.+|..|++.
T Consensus 6 ~~~l~v~~~~TL~~lid~L~~~p~~qlk~PSltt~~~~~~k~LYmq~pp~Lee~Tr~NL~k~l~eLgl~~g~ei~Vt 82 (98)
T 1y8x_B 6 PQNIQFSPSAKLQEVLDYLTNSASLQMKSPAITATLEGKNRTLYMQSVTSIEERTRPNLSKTLKELGLVDGQELAVA 82 (98)
T ss_dssp CCCEECCTTCBHHHHHHHHHHCTTCCCSSCEEEEEETTEEEEEECSSCHHHHHHHHHHHHSBSGGGTCCTTCEEEEE
T ss_pred cEEEEECCchhHHHHHHHHHhChHhhccCCeeeeecCCCCCeEEEeCcHHHHHHhHhhhhCCHHHhCCCCCCEEEEE
Confidence 45789999999999999998854322222223333 333 32 2457999999999999998
No 241
>1x4w_A Hypothetical protein FLJ13222; ZF-AN1 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=28.61 E-value=15 Score=30.01 Aligned_cols=40 Identities=30% Similarity=0.607 Sum_probs=25.3
Q ss_pred eeccCcCCCceeEecCCCCCccccccCcceeccccCCCCCCCCcccceeEeecccccccCCCCCcccc
Q psy15035 728 RVRCAQCKSGAVIVDRDPQSWSDVLEPRQISCHCTEEHCTTGPVSWAEFYFKCAQHVSANMNQVDECL 795 (816)
Q Consensus 728 Rv~C~~C~~~~~t~~~~p~~w~dvl~~~ri~g~c~~~~c~~~~~~~a~f~fkc~~h~~~~~~~~~~~~ 795 (816)
..||..|+.... .++.....| -|.+ .| |+.|+.. |+|.|.
T Consensus 15 ~~rC~~C~kk~g-------------L~~~egf~C---rCg~------~F---C~~HRy~---e~H~C~ 54 (67)
T 1x4w_A 15 RRRCFQCQTKLE-------------LVQQELGSC---RCGY------VF---CMLHRLP---EQHDCT 54 (67)
T ss_dssp TTBCSSSCCBCC-------------HHHHHHHCC---SSSC------CC---CTTTCST---GGGTCS
T ss_pred CCcchhhCCeec-------------ccccCceEe---cCCC------Ee---hhccCCc---cccCCc
Confidence 468999998422 111112467 4755 78 9999997 576663
No 242
>3iz6_X 40S ribosomal protein S27 (S27E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=25.91 E-value=55 Score=27.87 Aligned_cols=23 Identities=22% Similarity=0.603 Sum_probs=16.1
Q ss_pred CCccccceeccCcCCCceeEecC
Q psy15035 721 SKAHFYLRVRCAQCKSGAVIVDR 743 (816)
Q Consensus 721 ~~~~f~lRv~C~~C~~~~~t~~~ 743 (816)
+-+|||++|+|..|..-+...++
T Consensus 29 ~PnS~Fm~VkCp~C~~~~~VFSh 51 (86)
T 3iz6_X 29 SPNSFFMDVKCQGCFNITTVFSH 51 (86)
T ss_dssp ----CEEEEECTTTCCEEEEETT
T ss_pred CCCCcEeEEECCCCCCeeEEEec
Confidence 33799999999999987775554
No 243
>1qxf_A GR2, 30S ribosomal protein S27E; structural genomics, beta sheet, PSI, protein structure initiative; NMR {Archaeoglobus fulgidus} SCOP: g.41.8.4
Probab=24.64 E-value=34 Score=27.71 Aligned_cols=21 Identities=29% Similarity=0.770 Sum_probs=17.5
Q ss_pred ccccceeccCcCCCceeEecC
Q psy15035 723 AHFYLRVRCAQCKSGAVIVDR 743 (816)
Q Consensus 723 ~~f~lRv~C~~C~~~~~t~~~ 743 (816)
+|||++|+|..|..-+...++
T Consensus 2 nS~Fm~VKCp~C~niq~VFSh 22 (66)
T 1qxf_A 2 HSRFVKVKCPDCEHEQVIFDH 22 (66)
T ss_dssp CCCEEEEECTTTCCEEEEESS
T ss_pred CceeEEEECCCCCCceEEEec
Confidence 578999999999988775555
No 244
>3u52_E Phenol hydroxylase component PHO; 4-helix bundle, dioxygen, hydrocarbons, oxidore; HET: MPO EPE; 1.95A {Pseudomonas stutzeri} PDB: 2inn_E* 2inp_E
Probab=24.63 E-value=2.3e+02 Score=25.59 Aligned_cols=71 Identities=7% Similarity=0.155 Sum_probs=55.7
Q ss_pred ceEEEEEecCC----ceEEEEcCCCCcHHHHHHHHhhh--------hCCCCCCeEEEECCeecC--CCccccccCCCCCC
Q psy15035 604 TLMINIKSNTG----NTVCVNLDPASDIRNVKEMIAPK--------LGLKYEEVKIIFAGKELE--DTTIISECDLGQQS 669 (816)
Q Consensus 604 ~M~V~Vk~~~g----~t~~v~V~~~~TV~~LK~~I~~~--------~Gip~~~qrLif~Gk~L~--d~~tL~~~~I~~~s 669 (816)
.+-|+|-..+. .-+.+-|+|.++-++|-+.+-.. ..|.-+.-....+|+... .+++|++.||...|
T Consensus 23 ~qLlYigWd~HllFcap~~~p~pP~mpFg~lv~~vl~~~~~~hPDfa~idws~v~W~l~g~pftPD~~kSLaenG~~HKs 102 (119)
T 3u52_E 23 MQLLYVYWPDHLLFCAPFALLVQPGMTFSALVDEILKPATAAHPDSAKADFLNAEWLLNDEPFTPKADASLKEQGIDHKS 102 (119)
T ss_dssp CEEEEEECTTCTTSCSCEEEEECTTSBHHHHHHHTHHHHTTTSTTGGGCCTTSSEEEETTEEECCCTTSBTTTTTCCTTE
T ss_pred CEEEEEEecCCeeecCceeecCCCCCCHHHHHHHhcchhhhcCCccccCCcchheEEECCccCCCChhhhHHHcCCCchh
Confidence 45567766432 24789999999999998877654 256666777889999984 67899999999999
Q ss_pred EEEEe
Q psy15035 670 ILHAV 674 (816)
Q Consensus 670 tl~lv 674 (816)
.|.+.
T Consensus 103 ~lrf~ 107 (119)
T 3u52_E 103 MLTVT 107 (119)
T ss_dssp EEEEE
T ss_pred eEEEe
Confidence 99988
No 245
>2ylm_A Ubiquitin carboxyl-terminal hydrolase 7; UBL; 2.70A {Homo sapiens}
Probab=24.02 E-value=84 Score=35.81 Aligned_cols=72 Identities=13% Similarity=0.252 Sum_probs=55.1
Q ss_pred ceEEEEEec--CCceE----EEEcCCCCcHHHHHHHHhhhhCCCCCCeEEEEC------CeecC-CCcccccc--CCCCC
Q psy15035 604 TLMINIKSN--TGNTV----CVNLDPASDIRNVKEMIAPKLGLKYEEVKIIFA------GKELE-DTTIISEC--DLGQQ 668 (816)
Q Consensus 604 ~M~V~Vk~~--~g~t~----~v~V~~~~TV~~LK~~I~~~~Gip~~~qrLif~------Gk~L~-d~~tL~~~--~I~~~ 668 (816)
.+-||+|.= ..+++ .+.|+.+++|.+|-..|.++.|+|++.--.+|. ...|+ ...|+.+. .|.+|
T Consensus 130 ~iLlFlK~yDp~~q~L~~~G~~~v~~~~kv~~l~~~i~~~~g~p~dt~l~lyEEi~~~~ie~l~~~~~t~~~~~~eL~~G 209 (530)
T 2ylm_A 130 DVMLFLKMYDPKTRSLNYCGHIYTPISCKIRDLLPVMCDRAGFIQDTSLILYEEVKPNLTERIQDYDVSLDKALDELMDG 209 (530)
T ss_dssp EEEEEEEEEETTTTEEEEEEEEEEETTCBGGGTHHHHHHHHTCCTTCCEEEEEEEETTEEEECCCSSSBHHHHSTTCCTT
T ss_pred cEEEEEEeeCCCCCEEEEEEEEEECCCCCHHHHHHHHHHHcCCCCCCceEEEEecCCCceeEcccccccHHHHHhcccCC
Confidence 345666653 23333 367899999999999999999999987666665 34467 68899999 99999
Q ss_pred CEEEEee
Q psy15035 669 SILHAVK 675 (816)
Q Consensus 669 stl~lvr 675 (816)
++|..-+
T Consensus 210 dII~fQ~ 216 (530)
T 2ylm_A 210 DIIVFQK 216 (530)
T ss_dssp EEEEEEE
T ss_pred CEEEEEe
Confidence 9887774
No 246
>3ge3_C Toluene-4-monooxygenase system protein B; DIIRON hydroxylase, effector protein, T201A, aromatic hydrocarbons catabolism, FAD, flavoprotein; 1.52A {Pseudomonas mendocina} SCOP: d.15.12.0 PDB: 3dhh_C* 3dhg_C* 3dhi_C 3ge8_C 3i5j_C 3i63_C 3q14_C 3q2a_C* 3q3m_C* 3q3n_C* 3q3o_C* 3rmk_C* 3ri7_C*
Probab=23.91 E-value=2e+02 Score=24.34 Aligned_cols=59 Identities=15% Similarity=0.183 Sum_probs=48.6
Q ss_pred eEEEEcCCCCcHHHHHHHHhhhh-C--CC--CCCeEEEECCee--cCCCccccccCCCCCCEEEEe
Q psy15035 616 TVCVNLDPASDIRNVKEMIAPKL-G--LK--YEEVKIIFAGKE--LEDTTIISECDLGQQSILHAV 674 (816)
Q Consensus 616 t~~v~V~~~~TV~~LK~~I~~~~-G--ip--~~~qrLif~Gk~--L~d~~tL~~~~I~~~stl~lv 674 (816)
..-+.|+..+|+.++-++++.-. | ++ |.-.++...|.. |..+.|+++.||++-..|.+.
T Consensus 16 ~~Lv~VDt~dtmdqVA~k~A~h~VGrrv~p~pg~lrVr~~G~~~~~Pr~mtVaeaGl~Pme~vev~ 81 (84)
T 3ge3_C 16 VQLVVVDLNDSMDQVAEKVAYHCVNRRVAPREGVMRVRKHRSTELFPRDMTIAESGLNPTEVIDVV 81 (84)
T ss_dssp EEEEEEETTCBHHHHHHHHHHTTBTTTBCCCSSCEEEEETTCSCBCCTTCBHHHHCCCTTCEEEEE
T ss_pred EEEEEecCCCcHHHHHHHHhhhhcceeeCCCCCcEEEEECCCcccCCCCCEeeccCCCcceEEEEE
Confidence 34578999999999999998764 3 32 236788999998 999999999999998888775
No 247
>3u5c_b RP61, YS20, 40S ribosomal protein S27-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_X 3u5g_b
Probab=23.56 E-value=73 Score=26.90 Aligned_cols=24 Identities=17% Similarity=0.560 Sum_probs=19.4
Q ss_pred CCCccccceeccCcCCCceeEecC
Q psy15035 720 PSKAHFYLRVRCAQCKSGAVIVDR 743 (816)
Q Consensus 720 ~~~~~f~lRv~C~~C~~~~~t~~~ 743 (816)
++-+|||++|+|..|..-+...++
T Consensus 26 ~~PnS~Fm~VkCp~C~~~q~VFSh 49 (82)
T 3u5c_b 26 QGPRSYFLDVKCPGCLNITTVFSH 49 (82)
T ss_dssp CCCCCCEEEEECTTSCSCEEEESB
T ss_pred cCCCCcEEEEECCCCCCeeEEEec
Confidence 344799999999999998875555
No 248
>3j20_W 30S ribosomal protein S27E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=22.86 E-value=49 Score=26.57 Aligned_cols=23 Identities=22% Similarity=0.626 Sum_probs=18.5
Q ss_pred CCccccceeccCcCCCceeEecC
Q psy15035 721 SKAHFYLRVRCAQCKSGAVIVDR 743 (816)
Q Consensus 721 ~~~~f~lRv~C~~C~~~~~t~~~ 743 (816)
+-+|||++|+|..|..-+...++
T Consensus 8 ~PnS~Fm~VkCp~C~~~q~VFSh 30 (63)
T 3j20_W 8 MPRSRFLRVKCIDCGNEQIVFSH 30 (63)
T ss_dssp CCSCCEEEEECSSSCCEEEEESS
T ss_pred CCCCcEEEEECCCCCCeeEEEec
Confidence 34789999999999988775554
No 249
>2jtt_C Calcyclin-binding protein; S100A6, SIAH-1 interacting protein, ubiquitination, E3 ligase complex, beta-catenin, calcium, cell cycle, mitogen; NMR {Mus musculus}
Probab=22.43 E-value=55 Score=23.16 Aligned_cols=24 Identities=29% Similarity=0.455 Sum_probs=17.2
Q ss_pred hHHHHHHHhcCCHHHHHHHHHHHh
Q psy15035 47 NALVKHMLKSGDENTKNEIIKALQ 70 (816)
Q Consensus 47 ~~vVQKlL~~gs~eqr~~Ii~e~~ 70 (816)
+.+.++|.+.|++++|..|.++|.
T Consensus 9 ~~~fk~iY~~gddd~kram~KS~~ 32 (35)
T 2jtt_C 9 MNVLKKIYEDGDDDMKRTINKAWV 32 (35)
T ss_dssp HHHHHHHHTTCCSSHHHHHHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHh
Confidence 456777777777777777777654
No 250
>1wff_A Riken cDNA 2810002D23 protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1
Probab=22.30 E-value=49 Score=28.22 Aligned_cols=39 Identities=28% Similarity=0.562 Sum_probs=25.7
Q ss_pred eeccCcCCCceeEecCCCCCccccccCcceeccccCCCCCCCCcccceeEeecccccccCCCCCccccc
Q psy15035 728 RVRCAQCKSGAVIVDRDPQSWSDVLEPRQISCHCTEEHCTTGPVSWAEFYFKCAQHVSANMNQVDECLP 796 (816)
Q Consensus 728 Rv~C~~C~~~~~t~~~~p~~w~dvl~~~ri~g~c~~~~c~~~~~~~a~f~fkc~~h~~~~~~~~~~~~~ 796 (816)
..||..|+..-- .- +...|. |.+ .| |+.|+.. |+|.|.-
T Consensus 25 ~~rC~~C~kkvg-------------l~--~~f~Cr---Cg~------~F---C~~HRy~---e~H~C~f 63 (85)
T 1wff_A 25 MKHCFLCGKKTG-------------LA--TSFECR---CGN------NF---CASHRYA---EAHGCNY 63 (85)
T ss_dssp CCBCSSSCCBCS-------------SS--SCEECT---TCC------EE---CTTTCST---GGGTCCS
T ss_pred CccchhhCCeec-------------cc--CCeEcC---CCC------Ee---cccCCCc---cCCCCcc
Confidence 468999997311 00 145663 744 78 9999997 6777753
No 251
>1zso_A Hypothetical protein; structural genomics, PSI, protein structure initiative, STRU genomics of pathogenic protozoa consortium, SGPP; 2.17A {Plasmodium falciparum} SCOP: b.166.1.1
Probab=22.12 E-value=48 Score=31.85 Aligned_cols=42 Identities=10% Similarity=0.021 Sum_probs=25.2
Q ss_pred ccccceeccCcCCCceeEecCCCCCccccccCcceeccccCCCC--CCCCcccceeEeeccc
Q psy15035 723 AHFYLRVRCAQCKSGAVIVDRDPQSWSDVLEPRQISCHCTEEHC--TTGPVSWAEFYFKCAQ 782 (816)
Q Consensus 723 ~~f~lRv~C~~C~~~~~t~~~~p~~w~dvl~~~ri~g~c~~~~c--~~~~~~~a~f~fkc~~ 782 (816)
-.||++++|++|+...= + ...+.++-- +|+.| .|-|.+||.-
T Consensus 32 ~~~~fkvkC~~C~E~~~----------------k-v~v~~~e~~ei~gsRG-~aNfv~KCk~ 75 (164)
T 1zso_A 32 YLWIFNIRDSTSSLTRD----------------N-IQFRKTDILEIPNSRG-TANFMIKWTE 75 (164)
T ss_dssp CCEEEEEEETTSSCEEE----------------E-EEECTTCBEECTTSSC-EESEEECCSS
T ss_pred cEEEEEEEECCCCcccC----------------C-EEEcchheeecCCCCc-ceeEEEeccc
Confidence 35569999999987321 2 233332211 33323 6899999964
No 252
>3onh_A Ubiquitin-activating enzyme E1-like; ligase, SUMO conjugation, UBC9; 1.60A {Saccharomyces cerevisiae} PDB: 3ong_A
Probab=21.88 E-value=2e+02 Score=26.26 Aligned_cols=51 Identities=18% Similarity=0.244 Sum_probs=38.4
Q ss_pred CCCcHHHHHHHHhhhhCCCCCCeEEEE--CCeecC-------CCccccccCCCCCCEEEEe
Q psy15035 623 PASDIRNVKEMIAPKLGLKYEEVKIIF--AGKELE-------DTTIISECDLGQQSILHAV 674 (816)
Q Consensus 623 ~~~TV~~LK~~I~~~~Gip~~~qrLif--~Gk~L~-------d~~tL~~~~I~~~stl~lv 674 (816)
...|..+|-+.+..+.|.+. ++-++= ..+.|. -+++|++.||++|+.|.++
T Consensus 18 ~~~TL~dLV~~l~~~~gy~~-eiSV~~~~~~rLLyD~DfDDnl~k~L~dLgv~~gsfLtv~ 77 (127)
T 3onh_A 18 NKMKLSDFVVLIREKYSYPQ-DISLLDASNQRLLFDYDFEDLNDRTLSEINLGNGSIILFS 77 (127)
T ss_dssp HHCBHHHHHHHHHHHHTCCS-SEEEEETTTTEEEEETTBCTTTTSBTTTTTCCTTCEEEEE
T ss_pred cccCHHHHHHHHHHhcCCCC-cEEEEecCCCCeEeCCCccccccCcHHHcCcCCCcEEEEE
Confidence 35699999988988899875 555542 234442 2579999999999999998
No 253
>3au4_A Myosin-X; protein-protein complex, motor protein cargo transportation, protein-apoptosis complex; 1.90A {Homo sapiens} PDB: 3au5_A 3pzd_A
Probab=21.17 E-value=1.4e+02 Score=34.00 Aligned_cols=47 Identities=9% Similarity=0.181 Sum_probs=40.2
Q ss_pred CceEEEEEecCCceEEEEcCCCCcHHHHHHHHhhhhCCCC--CCeEEEE
Q psy15035 603 NTLMINIKSNTGNTVCVNLDPASDIRNVKEMIAPKLGLKY--EEVKIIF 649 (816)
Q Consensus 603 ~~M~V~Vk~~~g~t~~v~V~~~~TV~~LK~~I~~~~Gip~--~~qrLif 649 (816)
..+.+.|..++|....+.|++.+|+.+|-..|..+.|+.. +-+-|.+
T Consensus 215 ~~~~~~V~l~dg~~~~~~v~~~tt~~el~~~v~~~lgL~e~~~~FgL~~ 263 (555)
T 3au4_A 215 QEMTSTVYCHGGGSCKITINSHTTAGEVVEKLIRGLAMEDSRNMFALFE 263 (555)
T ss_dssp CCEEEEEEETTSCEEEEEECTTCBHHHHHHHHHHHTTCTTCCSEEEEEE
T ss_pred CCcceEEEecCCCeEEEEeCCCCcHHHHHHHHHHHcCCCCCCCceEEEE
Confidence 3577889999999999999999999999999999999974 4455654
No 254
>2hj1_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; 2.10A {Haemophilus influenzae} SCOP: d.15.3.4
Probab=20.94 E-value=1.9e+02 Score=25.05 Aligned_cols=68 Identities=10% Similarity=0.030 Sum_probs=47.7
Q ss_pred CceEEEEEec--C-CceEEEEcCCCCcHHHHHHHHhhhh---CCCCCCeEEEECCeecCCCccccccCCCCCCEEEEee
Q psy15035 603 NTLMINIKSN--T-GNTVCVNLDPASDIRNVKEMIAPKL---GLKYEEVKIIFAGKELEDTTIISECDLGQQSILHAVK 675 (816)
Q Consensus 603 ~~M~V~Vk~~--~-g~t~~v~V~~~~TV~~LK~~I~~~~---Gip~~~qrLif~Gk~L~d~~tL~~~~I~~~stl~lvr 675 (816)
+.|.|.|-.. + +..+.++++...||.++-+...-.. .|......+-.+|+.... +.-+.+|+.|-+.|
T Consensus 11 ~~~~v~v~ya~p~rq~~~~~~v~~g~TV~daI~~~gi~~~~peIdl~~~~V~Vng~~v~~-----d~~L~dGDRVEIyr 84 (97)
T 2hj1_A 11 NQINIEIAYAFPERYYLKSFQVDEGITVQTAITQSGILSQFPEIDLSTNKIGIFSRPIKL-----TDVLKEGDRIEIYR 84 (97)
T ss_dssp CEEEEEEEEEETTEEEEEEEEEETTCBHHHHHHHHTHHHHCTTCCTTTSEEEEEECSCCT-----TCBCCTTCEEEECC
T ss_pred ceEEEEEEEeCCCCCEEEEEEcCCCCcHHHHHHHcCCCccCCcccccccEEEEcCEECCC-----CccCCCCCEEEEEe
Confidence 4577777553 2 2456788999999999988865432 344445677788887773 45577899999993
No 255
>3pkr_A FLIG, flagellar motor switch protein; FLIF, FLIM, MOTA, motor prote; 2.60A {Helicobacter pylori} PDB: 3usw_A 3pl4_A 3usy_A
Probab=20.68 E-value=3.2e+02 Score=28.34 Aligned_cols=32 Identities=13% Similarity=0.085 Sum_probs=27.8
Q ss_pred ccCcChHHHHHHHHhhcCHHHHHHHHHHHHHH
Q psy15035 192 VHSKAGASVAMHIIWNATNKLKKKIVKELKGH 223 (816)
Q Consensus 192 ~~tk~Gs~Vv~~cl~~~~~kdRk~Iik~lk~~ 223 (816)
.....|...+-.+|.+.+....+.|+..|...
T Consensus 138 ~~~~gG~~~vA~ILN~~d~~~e~~iL~~L~~~ 169 (279)
T 3pkr_A 138 KIEVGGLRAVAEIFNRLGQKSAKTTLARIESV 169 (279)
T ss_dssp -CCCCSHHHHHHHHHTSCHHHHHHHHHHHHTT
T ss_pred ccccCcHHHHHHHHHcCChHHHHHHHHHHHhh
Confidence 56778999999999999999999999999843
Done!