RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy15035
(816 letters)
>d1m8za_ a.118.1.8 (A:) Pumilio 1 {Human (Homo sapiens) [TaxId:
9606]}
Length = 339
Score = 98.3 bits (244), Expect = 9e-23
Identities = 55/295 (18%), Positives = 116/295 (39%), Gaps = 23/295 (7%)
Query: 2 GQIV-FSHD--MSRIIQWLLKLSSPQMKKDIVKELLPFTVAMIKSKYSNALVKHMLKSGD 58
G I+ FS D SR IQ L+ ++P ++ + E+L ++ + N +++ + G
Sbjct: 24 GHIMEFSQDQHGSRFIQLKLERATPAERQLVFNEILQAAYQLMVDVFGNYVIQKFFEFGS 83
Query: 59 ENTKNEIIKALQPHVVTLLSHTTASPVLMYAHDQVASPAQKLAMRQELYGGLYESTGDKK 118
K + + ++ HV++L V+ A + Q+ M +EL G + + D+
Sbjct: 84 LEQKLALAERIRGHVLSLALQMYGCRVIQKA-LEFIPSDQQNEMVRELDGHVLKCVKDQN 142
Query: 119 INCLGD--IFEQSPEMKTAILSVTKKTILKSLQKTQVTGSALLHAVLLDFISHSSDSPDL 176
N + I P+ I+ K + V+ + H
Sbjct: 143 GNHVVQKCIECVQPQSLQFIIDAFKGQVFALSTHPYG------CRVIQRILEHCLP-DQT 195
Query: 177 MEVLEMLAPLPLLPFVHSKAGASVAMHIIWNATNKLKKKIVKELKGHLREVATSEFGHLV 236
+ +LE L V + G V H++ + + K KIV E++G++ ++ +F V
Sbjct: 196 LPILEELHQH-TEQLVQDQYGNYVIQHVLEHGRPEDKSKIVAEIRGNVLVLSQHKFASNV 254
Query: 237 LVTLLDNVDDTLLLKKALLPELLAE-------VVPLANHEYGRKVIAHLVSWCDP 284
+ + + T + L+ E+ + + +Y V+ ++ +P
Sbjct: 255 VEKCVTHASRT--ERAVLIDEVCTMNDGPHSALYTMMKDQYANYVVQKMIDVAEP 307
Score = 40.5 bits (94), Expect = 6e-04
Identities = 15/91 (16%), Positives = 40/91 (43%), Gaps = 7/91 (7%)
Query: 3 QIVFSHDMSRIIQWLLKLSSPQMKKDIVKELLPFT-------VAMIKSKYSNALVKHMLK 55
+ S +++ + +S + ++ E+ M+K +Y+N +V+ M+
Sbjct: 244 VLSQHKFASNVVEKCVTHASRTERAVLIDEVCTMNDGPHSALYTMMKDQYANYVVQKMID 303
Query: 56 SGDENTKNEIIKALQPHVVTLLSHTTASPVL 86
+ + ++ ++PH+ TL +T +L
Sbjct: 304 VAEPGQRKIVMHKIRPHIATLRKYTYGKHIL 334
Score = 28.2 bits (62), Expect = 4.3
Identities = 7/43 (16%), Positives = 22/43 (51%)
Query: 13 IIQWLLKLSSPQMKKDIVKELLPFTVAMIKSKYSNALVKHMLK 55
++Q ++ ++ P +K ++ ++ P + K Y ++ + K
Sbjct: 297 VVQKMIDVAEPGQRKIVMHKIRPHIATLRKYTYGKHILAKLEK 339
>d1jatb_ d.20.1.1 (B:) Ubiquitin conjugating enzyme, UBC {Baker's
yeast (Saccharomyces cerevisiae), mms2 [TaxId: 4932]}
Length = 136
Score = 80.9 bits (199), Expect = 1e-18
Identities = 35/114 (30%), Positives = 56/114 (49%), Gaps = 11/114 (9%)
Query: 523 VPRNFRLLEELEHGQRGVGDGTISWGLENDDDMTLTHWTGMIIGPPRTSTTGHIMDTIIG 582
VPRNFRLLEELE G++G G + S+GL + DD+T+T W G I+GPP ++ I I
Sbjct: 3 VPRNFRLLEELEKGEKGFGPESCSYGLADSDDITMTKWNGTILGPPHSNHENRIYSLSID 62
Query: 583 YIMSVLNEILHLFWISRKPDNTLMINIKSNTGNTVCVNLD------PASDIRNV 630
+ + + +IS+ + + + T V + A + +
Sbjct: 63 CGPNYPDSPPKVTFISK-----INLPCVNPTTGEVQTDFHTLRDWKRAYTMETL 111
>d2a4da1 d.20.1.1 (A:82-220) Ubiquitin conjugating enzyme, UBC
{Human (Homo sapiens), E2 variant 1 [TaxId: 9606]}
Length = 139
Score = 78.9 bits (194), Expect = 6e-18
Identities = 49/115 (42%), Positives = 63/115 (54%), Gaps = 10/115 (8%)
Query: 522 IVPRNFRLLEELEHGQRGVGDGTISWGLENDDDMTLTHWTGMIIGPPRTSTTGHIMDTII 581
VPRNFRLLEELE GQ+GVGDGT+SWGLE+D+DMTLT WTGMIIGPPRT I I
Sbjct: 3 KVPRNFRLLEELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTIYENRIYSLKI 62
Query: 582 GYIMSVLNEILHLFWISRKPDNTLMINIKSNTGNTVCVNLD------PASDIRNV 630
+ ++++ M + S+ G + + I+ V
Sbjct: 63 ECGPKYPEAPPFVRFVTK----INMNGVNSSNGVVDPRAISVLAKWQNSYSIKVV 113
>d1wx9a1 d.15.1.1 (A:8-80) Large proline-rich protein BAT3 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 73
Score = 57.9 bits (140), Expect = 2e-11
Identities = 15/72 (20%), Positives = 37/72 (51%), Gaps = 1/72 (1%)
Query: 607 INIKSNTGNTVCVNLDPASDIRNVKEMIAPKLGLKYEEVKIIFAGKELEDTTIISECDLG 666
+ +K+ T + +++ KE IA + + E+ ++I+ G+ L+D + E ++
Sbjct: 3 VLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLIYQGRVLQDDKKLQEYNV- 61
Query: 667 QQSILHAVKSSP 678
++H V+ +P
Sbjct: 62 GGKVIHLVERAP 73
>d2zeqa1 d.15.1.1 (A:1-78) Ubiquitin-like domain of parkin {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 78
Score = 57.2 bits (138), Expect = 4e-11
Identities = 24/68 (35%), Positives = 43/68 (63%)
Query: 607 INIKSNTGNTVCVNLDPASDIRNVKEMIAPKLGLKYEEVKIIFAGKELEDTTIISECDLG 666
+ ++ N+ V +D + I +KE++A + G+ +++++IFAGKEL + + CDL
Sbjct: 5 VFVRFNSSYGFPVEVDSDTSILQLKEVVAKRQGVPADQLRVIFAGKELPNHLTVQNCDLE 64
Query: 667 QQSILHAV 674
QQSI+H V
Sbjct: 65 QQSIVHIV 72
>d1z2ma2 d.15.1.1 (A:79-154) Interferon-induced 15 kDa protein
{Human (Homo sapiens) [TaxId: 9606]}
Length = 76
Score = 56.4 bits (136), Expect = 8e-11
Identities = 16/73 (21%), Positives = 33/73 (45%)
Query: 602 DNTLMINIKSNTGNTVCVNLDPASDIRNVKEMIAPKLGLKYEEVKIIFAGKELEDTTIIS 661
D L I +++N G + + + ++K+ ++ G++ + + F GK LED +
Sbjct: 1 DEPLSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLEDQLPLG 60
Query: 662 ECDLGQQSILHAV 674
E L S +
Sbjct: 61 EYGLKPLSTVFMN 73
>d2bwfa1 d.15.1.1 (A:2-74) DSK2 {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 73
Score = 56.3 bits (136), Expect = 1e-10
Identities = 22/73 (30%), Positives = 36/73 (49%), Gaps = 1/73 (1%)
Query: 604 TLMINIKSNTGNTVCVNLDPASDIRNVKEMIAPKLGLKYEEVKIIFAGKELEDTTIISEC 663
+L I+IKS + VN+ P S + KE I G+ ++I++GK L+D +
Sbjct: 1 SLNIHIKSG-QDKWEVNVAPESTVLQFKEAINKANGIPVANQRLIYSGKILKDDQTVESY 59
Query: 664 DLGQQSILHAVKS 676
+ +H VKS
Sbjct: 60 HIQDGHSVHLVKS 72
>d1bt0a_ d.15.1.1 (A:) Rub1 {Mouse-ear cress (Arabidopsis thaliana)
[TaxId: 3702]}
Length = 73
Score = 54.9 bits (132), Expect = 3e-10
Identities = 20/68 (29%), Positives = 39/68 (57%)
Query: 607 INIKSNTGNTVCVNLDPASDIRNVKEMIAPKLGLKYEEVKIIFAGKELEDTTIISECDLG 666
I +K+ TG + ++++P I +KE + K G+ + ++I+AGK+L D + ++
Sbjct: 3 IKVKTLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLIYAGKQLADDKTAKDYNIE 62
Query: 667 QQSILHAV 674
S+LH V
Sbjct: 63 GGSVLHLV 70
>d1wh3a_ d.15.1.1 (A:) 2'-5'-oligoadenylate synthetase-like protein,
OASL {Human (Homo sapiens) [TaxId: 9606]}
Length = 87
Score = 54.2 bits (130), Expect = 7e-10
Identities = 15/77 (19%), Positives = 34/77 (44%)
Query: 602 DNTLMINIKSNTGNTVCVNLDPASDIRNVKEMIAPKLGLKYEEVKIIFAGKELEDTTIIS 661
+ + + +K+ G + ++P S I +K+ I + GL ++ ++ F G+ L+D +
Sbjct: 5 SSGIQVFVKNPDGGSYAYAINPNSFILGLKQQIEDQQGLPKKQQQLEFQGQVLQDWLGLG 64
Query: 662 ECDLGQQSILHAVKSSP 678
+ L K
Sbjct: 65 IYGIQDSDTLILSKKKG 81
>d1ttna1 d.15.1.1 (A:21-100) Dendritic cell-derived ubiquitin-like
protein {Human (Homo sapiens) [TaxId: 9606]}
Length = 80
Score = 53.8 bits (129), Expect = 8e-10
Identities = 12/75 (16%), Positives = 33/75 (44%)
Query: 607 INIKSNTGNTVCVNLDPASDIRNVKEMIAPKLGLKYEEVKIIFAGKELEDTTIISECDLG 666
+ ++ +TG + + + + ++K + G++ + F+G+ L D E +
Sbjct: 6 LRLRLSTGKDLKLVVRSTDTVFHMKRRLHAAEGVEPGSQRWFFSGRPLTDKMKFEELKIP 65
Query: 667 QQSILHAVKSSPENN 681
+ ++ + S P N
Sbjct: 66 KDYVVQVIVSQPVQN 80
>d1ogwa_ d.15.1.1 (A:) Ubiquitin {Human (Homo sapiens) [TaxId:
9606]}
Length = 76
Score = 53.4 bits (128), Expect = 1e-09
Identities = 26/68 (38%), Positives = 45/68 (66%)
Query: 607 INIKSNTGNTVCVNLDPASDIRNVKEMIAPKLGLKYEEVKIIFAGKELEDTTIISECDLG 666
I +K+ TG T+ + ++P+ I NVK I K G+ ++ ++IFAGK+LED +S+ ++
Sbjct: 3 IFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQ 62
Query: 667 QQSILHAV 674
++S LH V
Sbjct: 63 KESTLHLV 70
>d1oqya4 d.15.1.1 (A:1-77) Ubiquitin-like domain of Rad23 homolog A
(Hhr23a) {Human (Homo sapiens) [TaxId: 9606]}
Length = 77
Score = 51.0 bits (122), Expect = 6e-09
Identities = 16/77 (20%), Positives = 37/77 (48%), Gaps = 3/77 (3%)
Query: 603 NTLMINIKSNTGNTVCVNLDPASDIRNVKEMIAPKLGLKY---EEVKIIFAGKELEDTTI 659
+ + I +K+ T + ++P ++ +KE I + G K+I+AGK L D
Sbjct: 1 SAVTITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVP 60
Query: 660 ISECDLGQQSILHAVKS 676
I + + +++ + + +
Sbjct: 61 IRDYRIDEKNFVVVMVT 77
>d1euvb_ d.15.1.1 (B:) SUMO-1 (smt3 homologue) {Baker's yeast
(Saccharomyces cerevisiae), smt3 [TaxId: 4932]}
Length = 79
Score = 50.6 bits (121), Expect = 9e-09
Identities = 12/69 (17%), Positives = 32/69 (46%), Gaps = 1/69 (1%)
Query: 607 INIK-SNTGNTVCVNLDPASDIRNVKEMIAPKLGLKYEEVKIIFAGKELEDTTIISECDL 665
IN+K S+ + + + + +R + E A + G + + ++ ++ G ++ + D+
Sbjct: 5 INLKVSDGSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDM 64
Query: 666 GQQSILHAV 674
I+ A
Sbjct: 65 EDNDIIEAH 73
>d1uela_ d.15.1.1 (A:) Ubiquitin-like domain of Rad23 homolog B
(Hhr23B) {Human (Homo sapiens) [TaxId: 9606]}
Length = 95
Score = 51.2 bits (122), Expect = 1e-08
Identities = 18/89 (20%), Positives = 39/89 (43%), Gaps = 3/89 (3%)
Query: 607 INIKSNTGNTVCVNLDPASDIRNVKEMIA---PKLGLKYEEVKIIFAGKELEDTTIISEC 663
+ +K+ T +++DP ++ +KE I K K+I+AGK L D T + E
Sbjct: 3 VTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALKEY 62
Query: 664 DLGQQSILHAVKSSPENNKIQKSKPMNST 692
+ +++ + + + P+ +
Sbjct: 63 KIDEKNFVVVMVTKPKAVSTPAPATLEHH 91
>d1wiaa_ d.15.1.1 (A:) Ubiquitin-like protein bab25500
(2010008E23Rik) {Mouse (Mus musculus) [TaxId: 10090]}
Length = 95
Score = 50.3 bits (120), Expect = 2e-08
Identities = 12/80 (15%), Positives = 30/80 (37%), Gaps = 4/80 (5%)
Query: 602 DNTLMINIKSNTGNTVCVNLDPASDIRNVKEMIAPKLGLKYEEVKIIFAGKEL-EDTTII 660
+ + + +K P + +K P ++K+I+ G+ L + +
Sbjct: 5 SSGINVRLKFLNDTEELAVARPEDTVGTLKSKYFPGQE---SQMKLIYQGRLLQDPARTL 61
Query: 661 SECDLGQQSILHAVKSSPEN 680
S ++ ++H +S P
Sbjct: 62 SSLNITNNCVIHCHRSPPGA 81
>d1wgda_ d.15.1.1 (A:) Homocysteine-responsive endoplasmic
reticulum-resident ubiquitin-like domain member 1
protein, HERPUD1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 93
Score = 49.9 bits (119), Expect = 2e-08
Identities = 14/79 (17%), Positives = 36/79 (45%), Gaps = 4/79 (5%)
Query: 604 TLMINIKSNTGNTVCVNLDPASDIRNVKEMIAPKLGLKY--EEVKIIFAGKELEDTTIIS 661
TL++ + + ++ D + ++K ++ + E+ ++I++GK L D +
Sbjct: 9 TLLVKSPNQRHRDLELSGDRGWSVGHLKAHLSRVYPERPRPEDQRLIYSGKLLLDHQCLR 68
Query: 662 ECDLGQQS--ILHAVKSSP 678
+ Q+ +LH V +
Sbjct: 69 DLLPKQEKRHVLHLVCNVK 87
>d1wgha_ d.15.1.1 (A:) Ubiquitin-like protein 3, Ubl3 {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 116
Score = 50.0 bits (119), Expect = 5e-08
Identities = 14/105 (13%), Positives = 38/105 (36%), Gaps = 10/105 (9%)
Query: 598 SRKPDNTLMINIKSNTGNTVCVNLDPASDIRNVKEMIAPKLGLKYEE--------VKIIF 649
S P + + + + +G T P ++ + + + +EE +++I+
Sbjct: 10 SHVPADMINLRLILVSGKTKEFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLIY 69
Query: 650 AGKELEDTTIISECDL--GQQSILHAVKSSPENNKIQKSKPMNST 692
G+ L + L G+ +++H V + + +
Sbjct: 70 QGRFLHGNVTLGALKLPFGKTTVMHLVARETLPEPNSQGQRSGPS 114
>d1zkha1 d.15.1.1 (A:1-86) Splicing factor 3 subunit 1, C-terminal
domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 86
Score = 48.3 bits (115), Expect = 7e-08
Identities = 9/62 (14%), Positives = 26/62 (41%)
Query: 613 TGNTVCVNLDPASDIRNVKEMIAPKLGLKYEEVKIIFAGKELEDTTIISECDLGQQSILH 672
G + L + +K I G+ + K+ + G ++D+ ++ ++ +++H
Sbjct: 20 NGQVLVFTLPLTDQVSVIKVKIHEATGMPAGKQKLQYEGIFIKDSNSLAYYNMANGAVIH 79
Query: 673 AV 674
Sbjct: 80 LA 81
>d1z2ma1 d.15.1.1 (A:3-78) Interferon-induced 15 kDa protein {Human
(Homo sapiens) [TaxId: 9606]}
Length = 76
Score = 46.0 bits (109), Expect = 4e-07
Identities = 16/72 (22%), Positives = 32/72 (44%), Gaps = 2/72 (2%)
Query: 607 INIKSNTGNTVCVNLDPASDIRNVKEMIAPKLGLKYEEVKIIF--AGKELEDTTIISECD 664
+ +K GN V+L + + +K I K+G+ + ++ +G L+D ++
Sbjct: 3 LTVKMLAGNEFQVSLSSSMSVSELKAQITQKIGVHAFQQRLAVHPSGVALQDRVPLASQG 62
Query: 665 LGQQSILHAVKS 676
LG S + V
Sbjct: 63 LGPGSTVLLVVD 74
>d1wy8a1 d.15.1.1 (A:8-83) Ubiquitin-like PHD and RING finger
domain-containing protein 2 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 76
Score = 45.7 bits (108), Expect = 4e-07
Identities = 13/70 (18%), Positives = 35/70 (50%), Gaps = 2/70 (2%)
Query: 607 INIKSNTGNTVCV--NLDPASDIRNVKEMIAPKLGLKYEEVKIIFAGKELEDTTIISECD 664
I +++ G+ C ++ + I ++E + ++ E ++ + GK+LE+ + + D
Sbjct: 3 IQVRTIDGSKTCTIEDVSRKATIEELRERVWALFDVRPECQRLFYRGKQLENGYTLFDYD 62
Query: 665 LGQQSILHAV 674
+G I+ +
Sbjct: 63 VGLNDIIQLL 72
>d1v2ya_ d.15.1.1 (A:) Ubiquitin-like protein 3300001g02rik {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 105
Score = 46.6 bits (110), Expect = 6e-07
Identities = 11/96 (11%), Positives = 35/96 (36%), Gaps = 16/96 (16%)
Query: 602 DNTLMINIKSNTGNTVCVNLDPASDIRNVKEMIAPKLGLKYEEVK--------------- 646
+ + + + G + V + + + ++K+ I + LK E
Sbjct: 5 SSGMTVRVCKMDGEVMPVVVVQNATVLDLKKAIQRYVQLKQEREGGVQHISWSYVWRTYH 64
Query: 647 IIFAGKELEDTTI-ISECDLGQQSILHAVKSSPENN 681
+ AG++L + + + + + + +K + +
Sbjct: 65 LTSAGEKLTEDRKKLRDYGIRNRDEVSFIKKLGQKS 100
>d1wgga_ d.15.1.1 (A:) Ubiquitin carboxyl-terminal hydrolase 14
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 96
Score = 45.8 bits (108), Expect = 8e-07
Identities = 10/81 (12%), Positives = 25/81 (30%), Gaps = 1/81 (1%)
Query: 602 DNTLMINIKSNTGNTVCVNLDPASDIRNVKEMIAPKLGLKYEEVKIIFAGKELEDTTIIS 661
+ + +K V L+ K + G++ K++ G L+D
Sbjct: 5 SSGYSVTVKWGKEKFEGVELNTDEPPMVFKAQLFALTGVQPARQKVMVKGGTLKDDD-WG 63
Query: 662 ECDLGQQSILHAVKSSPENNK 682
+ + + S+ +
Sbjct: 64 NIKMKNGMTVLMMGSADALPE 84
>d1uh6a_ d.15.1.1 (A:) Ubiquitin-like protein 5, ubl5 {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 100
Score = 45.7 bits (108), Expect = 1e-06
Identities = 11/75 (14%), Positives = 29/75 (38%)
Query: 598 SRKPDNTLMINIKSNTGNTVCVNLDPASDIRNVKEMIAPKLGLKYEEVKIIFAGKELEDT 657
S + + G V V + I ++K++IA + G ++ ++ + +D
Sbjct: 22 SEGAATMIEVVCNDRLGKKVRVKCNTDDTIGDLKKLIAAQTGTRWNKIVLKKWYTIFKDH 81
Query: 658 TIISECDLGQQSILH 672
+ + ++ L
Sbjct: 82 VSLGDYEIHDGMNLE 96
>d1v5ta_ d.15.1.1 (A:) 8430435i17rik protein {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 90
Score = 44.6 bits (105), Expect = 2e-06
Identities = 12/82 (14%), Positives = 28/82 (34%), Gaps = 3/82 (3%)
Query: 602 DNTLMINIKSNTGNTVCVNLDPASDIRNVKEMIAPKLGLKYEEVKII---FAGKELEDTT 658
+ L I +K L + ++K+ + G+ E K++ GK E+
Sbjct: 5 SSGLPIIVKWGGQEYSVTTLSEDDTVLDLKQFLKTLTGVLPERQKLLGLKVKGKPAENDV 64
Query: 659 IISECDLGQQSILHAVKSSPEN 680
+ L + + + +
Sbjct: 65 KLGALKLKPNTKIMMMGTRESG 86
>d2faza1 d.15.1.1 (A:1-76) Ubiquitin-like PHD and RING finger
domain-containing protein 1 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 76
Score = 44.1 bits (104), Expect = 2e-06
Identities = 8/70 (11%), Positives = 29/70 (41%), Gaps = 2/70 (2%)
Query: 607 INIKSNTGNT--VCVNLDPASDIRNVKEMIAPKLGLKYEEVKIIFAGKELEDTTIISECD 664
I +++ G +L + + ++ I ++ ++ + GK++ED + + +
Sbjct: 3 IQVRTMDGRQTHTVDSLSRLTKVEELRRKIQELFHVEPGLQRLFYRGKQMEDGHTLFDYE 62
Query: 665 LGQQSILHAV 674
+ + +
Sbjct: 63 VRLNDTIQLL 72
>d1wjua_ d.15.1.1 (A:) NEDD8 ultimate buster-1, NUB1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 100
Score = 44.6 bits (105), Expect = 2e-06
Identities = 10/72 (13%), Positives = 24/72 (33%)
Query: 607 INIKSNTGNTVCVNLDPASDIRNVKEMIAPKLGLKYEEVKIIFAGKELEDTTIISECDLG 666
+ + + R ++ IA GL+ +KI+ K+L+ + E +
Sbjct: 22 LPPRLKKDRKNLLETRLHITGRELRSKIAETFGLQENYIKIVINKKQLQLGKTLEEQGVA 81
Query: 667 QQSILHAVKSSP 678
++
Sbjct: 82 HNVKAMVLELKQ 93
>d1se9a_ d.15.1.1 (A:) Hypothetical protein At3g01050 {Thale cress
(Arabidopsis thaliana) [TaxId: 3702]}
Length = 101
Score = 43.4 bits (102), Expect = 7e-06
Identities = 19/94 (20%), Positives = 37/94 (39%), Gaps = 14/94 (14%)
Query: 603 NTLMINIKSNTGNTVC-VNLDPASDIRNVKEMIAPKLGLKYEEV-------KIIFAGKEL 654
N L I + G+ + A+ + +KE + + + E K+I AGK L
Sbjct: 6 NQLEIKFRLTDGSDIGPKAFPDATTVSALKETVISEWPREKENGPKTVKEVKLISAGKVL 65
Query: 655 EDTTIISECDL------GQQSILHAVKSSPENNK 682
E++ + + G + +H + +P K
Sbjct: 66 ENSKTVKDYRSPVSNLAGAVTTMHVIIQAPVTEK 99
>d1we6a_ d.15.1.1 (A:) Splicing factor 3 subunit 1, C-terminal
domain {Thale cress (Arabidopsis thaliana) [TaxId:
3702]}
Length = 111
Score = 43.4 bits (102), Expect = 7e-06
Identities = 15/82 (18%), Positives = 40/82 (48%), Gaps = 3/82 (3%)
Query: 596 WISRKP-DNTLMINIKS-NTGNTVCVNLDPASD-IRNVKEMIAPKLGLKYEEVKIIFAGK 652
++++ P T+ ++ + N G + + + S+ + ++KE IA ++ + + K+
Sbjct: 20 FLAQHPGPATIRVSKPNENDGQFMEITVQSLSENVGSLKEKIAGEIQIPANKQKLSGKAG 79
Query: 653 ELEDTTIISECDLGQQSILHAV 674
L+D ++ ++G IL
Sbjct: 80 FLKDNMSLAHYNVGAGEILTLS 101
>d2c9wb1 d.15.1.1 (B:2-104) Elongin B {Human (Homo sapiens) [TaxId:
9606]}
Length = 103
Score = 42.9 bits (101), Expect = 8e-06
Identities = 10/55 (18%), Positives = 24/55 (43%)
Query: 615 NTVCVNLDPASDIRNVKEMIAPKLGLKYEEVKIIFAGKELEDTTIISECDLGQQS 669
T+ + +S + +K ++ L +E ++ + L+D + EC Q+
Sbjct: 11 TTIFTDAKESSTVFELKRIVEGILKRPPDEQRLYKDDQLLDDGKTLGECGFTSQT 65
>d1x1ma1 d.15.1.1 (A:8-101) Ubiquitin-like protein 7 {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 94
Score = 42.5 bits (100), Expect = 1e-05
Identities = 14/56 (25%), Positives = 28/56 (50%), Gaps = 3/56 (5%)
Query: 625 SDIRNVKEMIAPKLGLKY---EEVKIIFAGKELEDTTIISECDLGQQSILHAVKSS 677
I +K++IA KL E + +I+ G++L+D + + S +H ++ S
Sbjct: 38 YSISFLKQLIAGKLQESVPDPELIDLIYCGRKLKDDQTLDFYGIQPGSTVHVLRKS 93
>d1v6ea_ d.15.1.1 (A:) Ubiquitin-like domain of tubulin folding
cofactor B {Mouse (Mus musculus) [TaxId: 10090]}
Length = 95
Score = 41.4 bits (97), Expect = 2e-05
Identities = 9/83 (10%), Positives = 26/83 (31%), Gaps = 8/83 (9%)
Query: 604 TLMINIKSN-TGNTVCVNLDPASDIRNVKEMIAPKLGLKYEEVKIIFAGKE-------LE 655
+M+ I S+ + I K + +G +++ G + +
Sbjct: 7 GVMVFISSSLNSFRSEKRYSRSLTIAEFKCKLELVVGSPASCMELELYGADDKFYSKLDQ 66
Query: 656 DTTIISECDLGQQSILHAVKSSP 678
+ ++ + +H + S
Sbjct: 67 EDALLGSYPVDDGCRIHVIDHSG 89
>d1j8ca_ d.15.1.1 (A:) Ubiquitin-like N-terminal domain of PLIC-2
{Human (Homo sapiens) [TaxId: 9606]}
Length = 103
Score = 39.2 bits (91), Expect = 2e-04
Identities = 14/74 (18%), Positives = 33/74 (44%), Gaps = 1/74 (1%)
Query: 601 PDNTLMINIKSNTGNTVCVNLDPASDIRNVKEMIAPKLGLKYEEVKIIFAGKELEDTTII 660
+ + +K+ + S ++ KE I+ + + +++ +IFAGK L+D +
Sbjct: 29 EPKIIKVTVKTPKE-KEEFAVPENSSVQQFKEAISKRFKSQTDQLVLIFAGKILKDQDTL 87
Query: 661 SECDLGQQSILHAV 674
+ + +H V
Sbjct: 88 IQHGIHDGLTVHLV 101
>d1fzya_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Baker's
yeast (Saccharomyces cerevisiae), ubc1 [TaxId: 4932]}
Length = 149
Score = 38.6 bits (89), Expect = 7e-04
Identities = 15/111 (13%), Positives = 36/111 (32%), Gaps = 5/111 (4%)
Query: 525 RNFRLLEELEHGQRGVGDGTISWGLENDDDMTLTHWTGMIIGPPRTSTTGHIMDTIIGYI 584
R R+++E++ + I+ ++ D+ H G +GPP T G I +
Sbjct: 2 RAKRIMKEIQAVKDDPAAH-ITLEFVSESDIH--HLKGTFLGPPGTPYEGGKFVVDI-EV 57
Query: 585 MSVLNEILHLFWISRKPDNT-LMINIKSNTGNTVCVNLDPASDIRNVKEMI 634
K + + + + + P +++ +
Sbjct: 58 PMEYPFKPPKMQFDTKVYHPNISSVTGAICLDILKNAWSPVITLKSALISL 108
>d1t0ya_ d.15.1.1 (A:) Ubiquitin-like domain of tubulin folding
cofactor B {Nematode (Caenorhabditis elegans) [TaxId:
6239]}
Length = 90
Score = 36.8 bits (85), Expect = 0.001
Identities = 10/86 (11%), Positives = 29/86 (33%), Gaps = 8/86 (9%)
Query: 603 NTLMINIKSN-TGNTVCVNLDPASDIRNVKEMIAPKLGLKYEEVKIIFAGKE-------L 654
+ I +N T + + ++K+ + +G + ++I +
Sbjct: 3 EVYDLEITTNATDFPMEKKYPAGMSLNDLKKKLELVVGTTVDSMRIQLFDGDDQLKGELT 62
Query: 655 EDTTIISECDLGQQSILHAVKSSPEN 680
+ + + + +HAV + N
Sbjct: 63 DGAKSLKDLGVRDGYRIHAVDVTGGN 88
>d2awfa1 d.20.1.1 (A:7-131) Ubiquitin conjugating enzyme, UBC {Human
(Homo sapiens), E2 G1 [TaxId: 9606]}
Length = 125
Score = 35.0 bits (80), Expect = 0.009
Identities = 17/74 (22%), Positives = 31/74 (41%), Gaps = 3/74 (4%)
Query: 526 NFRLLEELEHGQRGVGDGTISWGLENDDDMTLTHWTGMIIGPPRTSTTGHIMDTIIGYIM 585
+ L +L + +G S GL +D+D+ W +IIGPP T G + + +
Sbjct: 1 SLLLRRQLAELNKNPVEG-FSAGLIDDNDLY--RWEVLIIGPPDTLYEGGVFKAHLTFPK 57
Query: 586 SVLNEILHLFWISR 599
+ +I+
Sbjct: 58 DYPLRPPKMKFITE 71
>d1wjna_ d.15.1.1 (A:) Tubulin-folding protein TbcE {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 97
Score = 34.1 bits (78), Expect = 0.010
Identities = 14/86 (16%), Positives = 29/86 (33%), Gaps = 9/86 (10%)
Query: 604 TLMINI-KSNTGNTVCVNLDPASDIRNVKEMIAPKLGLKYEEVKIIFAGKELEDTTIISE 662
TL I + L + ++ VK +++ L + E+ + + ++ I E
Sbjct: 11 TLKIKCSNQPERQILEKQLPDSMTVQKVKGLLSRLLKVPVSELLLSYESSKMPGREIELE 70
Query: 663 CD--------LGQQSILHAVKSSPEN 680
D + L S P +
Sbjct: 71 NDLQPLQFYSVENGDCLLVRWSGPSS 96
>d1pzva_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Nematode
(Caenorhabditis elegans), E2-19 kDa [TaxId: 6239]}
Length = 161
Score = 35.1 bits (80), Expect = 0.012
Identities = 25/104 (24%), Positives = 41/104 (39%), Gaps = 7/104 (6%)
Query: 526 NFRLLEELEHGQRGVGDGTISWGLENDDDMTLTHWTGMIIGPPRTSTTGHIMDTIIGYIM 585
+ L ++L +R DG S GL +D+D+ W ++IGPP T G I+ +
Sbjct: 2 SLLLKKQLADMRRVPVDG-FSAGLVDDNDIY--KWEVLVIGPPDTLYEGGFFKAILDFPR 58
Query: 586 SVLNEILHLFWISRKPDNTLMINIKSNTGNTVCVNLDPASDIRN 629
+ + +IS NI + + DP D
Sbjct: 59 DYPQKPPKMKFISE----IWHPNIDKEGNVCISILHDPGDDKWG 98
>d2a7la1 d.20.1.1 (A:1-117) Ubiquitin-protein ligase W (E2 W) {Human
(Homo sapiens) [TaxId: 9606]}
Length = 117
Score = 33.9 bits (77), Expect = 0.020
Identities = 16/108 (14%), Positives = 38/108 (35%), Gaps = 11/108 (10%)
Query: 528 RLLEELEHGQRGVGDGTISWGLENDDDMTLTHWTGMIIGPPRTSTTGHIMDTIIGYIMSV 587
RL +EL Q G ++ ++ + +T W + G P T G + +
Sbjct: 7 RLQKELLALQNDPPPG-MTLNEKSVQNS-ITQWIVDMEGAPGTLYEGEKFQLLFKFSSRY 64
Query: 588 LNEILHLFWISRKPDNTLMINIKSNTGNTVCVNL-----DPASDIRNV 630
+ + + + + +C+++ PA +++V
Sbjct: 65 PFDSPQVMFTGENIPVHPHV----YSNGHICLSILTEDWSPALSVQSV 108
>d1wxva1 d.15.1.1 (A:7-87) Bag-family molecular chaperone
regulator-1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 81
Score = 32.1 bits (73), Expect = 0.034
Identities = 10/56 (17%), Positives = 24/56 (42%), Gaps = 1/56 (1%)
Query: 622 DPASDIRNVKEMIAPKLGLKYEEVKIIFAGKEL-EDTTIISECDLGQQSILHAVKS 676
++++ +++ +G+ K+IF GK L E T +S + + +
Sbjct: 23 SSEPVVQDLAQVVEEVIGVPQSFQKLIFKGKSLKEMETPLSALGIQDGCRVMLIGK 78
>d1zuoa1 d.20.1.1 (A:201-362) Ubiquitin-conjugating enzyme E2 Q2,
C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 162
Score = 33.7 bits (76), Expect = 0.036
Identities = 11/50 (22%), Positives = 18/50 (36%), Gaps = 1/50 (2%)
Query: 528 RLLEELEHGQRGVGDGTISWGLENDDDMTLTHWTGMIIGPPRTSTTGHIM 577
RL++EL R T + +E +D L W + S +
Sbjct: 8 RLMKELRDIYRSQSYKTGIYSVELINDS-LYDWHVKLQKVDPDSPLHSDL 56
>d2uyza1 d.20.1.1 (A:3-158) Ubiquitin conjugating enzyme, UBC {Human
(Homo sapiens), ubc9 [TaxId: 9606]}
Length = 156
Score = 32.8 bits (74), Expect = 0.079
Identities = 12/44 (27%), Positives = 20/44 (45%), Gaps = 1/44 (2%)
Query: 528 RLLEELEHGQRGVGDGTISWGLEN-DDDMTLTHWTGMIIGPPRT 570
RL +E + ++ G ++ +N D M L +W I G T
Sbjct: 6 RLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGT 49
>d2fo3a1 d.20.1.1 (A:9-117) Putative ubiquitin-conjugating enzyme,
E2 domain {Plasmodium chabaudi [TaxId: 5825]}
Length = 109
Score = 32.0 bits (72), Expect = 0.082
Identities = 12/109 (11%), Positives = 37/109 (33%), Gaps = 14/109 (12%)
Query: 527 FRLLEELEHGQRGVGDGTISWGLENDDDMTLTHWTGMIIGPPRTSTTGHIMDTIIGYIMS 586
+R+ +EL + + + ++ + W +G T + I +
Sbjct: 1 YRIQKELHNFLNNPPIN-CTLDVHPNN---IRIWIVKYVGLENTIYANEVYKLKIIFPDD 56
Query: 587 VLNEILHLFWISRKPDNTLMINIKSNTGNTVCVNL-----DPASDIRNV 630
+ ++++ + G+ +C++L +P+ I +
Sbjct: 57 YPLKPPIVYFLQ----KPPKHTHVYSNGD-ICLSLLGDDYNPSLSISGL 100
>d1yh2a1 d.20.1.1 (A:1-154) Ubiquitin conjugating enzyme, UBC {Human
(Homo sapiens), E2 T [TaxId: 9606]}
Length = 154
Score = 31.0 bits (69), Expect = 0.27
Identities = 11/59 (18%), Positives = 17/59 (28%), Gaps = 4/59 (6%)
Query: 525 RNFRLLEELEHGQRGVGDGTISWGLENDDDMTLTHWTGMIIGPPRTSTTGHIMDTIIGY 583
R RL EL G I+ + D + I+G T + +
Sbjct: 3 RASRLKRELHMLATEPPPG-ITCWQDKDQ---MDDLRAQILGGANTPYEKGVFKLEVII 57
>d1yrva1 d.20.1.1 (A:1-148) Ubiquitin conjugating enzyme, UBC {Human
(Homo sapiens), E2 U [TaxId: 9606]}
Length = 148
Score = 30.9 bits (69), Expect = 0.27
Identities = 10/107 (9%), Positives = 30/107 (28%), Gaps = 10/107 (9%)
Query: 528 RLLEELEHGQRGVGDGTISWGLENDDDMTLTHWTGMIIGPPRTSTTGHIMDTIIGYIMSV 587
L + + G I+ ++D + W I G + G + I +
Sbjct: 8 LLHRDFCDLKENNYKG-ITAKPVSED---MMEWEVEIEGLQNSVWQGLVFQLTIHFTSEY 63
Query: 588 LNEILHLFWISRKPDNTLMINIKSNTGNTVCV----NLDPASDIRNV 630
+ +I+ ++ + + + + ++
Sbjct: 64 NYAPPVVKFIT--IPFHPNVDPHTGQPCIDFLDNPEKWNTNYTLSSI 108
>d2vglb_ a.118.1.10 (B:) Adaptin beta subunit N-terminal fragment
{Human (Homo sapiens) [TaxId: 9606]}
Length = 579
Score = 31.7 bits (71), Expect = 0.40
Identities = 20/171 (11%), Positives = 55/171 (32%), Gaps = 36/171 (21%)
Query: 10 MSRIIQWLLKLSSPQMKKDIVKELLPFTVAMIKSKYSNALVKHMLKSGDENTKNEIIKAL 69
+ +++L+S ++ EL K D + + ++A+
Sbjct: 332 KLEKLDIMIRLASQANIAQVLAEL-----------------KEYATEVDVDFVRKAVRAI 374
Query: 70 QPHVVTLLSHTTASPVLMYAHDQVASPAQKLAMRQELYGGLYESTGDKKINCLGDIFEQS 129
+ +A + D + + + I + DIF +
Sbjct: 375 --GRCAIKVEQSAERCVSTLLDLIQTKV--------------NYVVQEAIVVIRDIFRKY 418
Query: 130 PEMKTAILSVTKKTILKSLQKTQVTGSALLHAVLLDFISHSSDSPDLMEVL 180
P +I++ + L SL + + + ++ ++ ++ +L+E
Sbjct: 419 PNKYESIIATLCE-NLDSLDEPDARAAMIW--IVGEYAERIDNADELLESF 466
>d1i7ka_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Human
(Homo sapiens), ubch10 [TaxId: 9606]}
Length = 146
Score = 30.1 bits (67), Expect = 0.50
Identities = 17/62 (27%), Positives = 22/62 (35%), Gaps = 4/62 (6%)
Query: 524 PRNFRLLEELEHGQRGVGDGTISWGLENDDDMTLTHWTGMIIGPPRTSTTGHIMDTIIGY 583
P RL +EL GD IS E+D+ L W G I G T + +
Sbjct: 1 PVGKRLQQELMTLMMS-GDKGISAFPESDN---LFKWVGTIHGAAGTVYEDLRYKLSLEF 56
Query: 584 IM 585
Sbjct: 57 PS 58
>d2f4za1 d.20.1.1 (A:32-192) Hypothetical protein Tgtwinscan_2721,
E2 domain {Toxoplasma gondii [TaxId: 5811]}
Length = 161
Score = 29.8 bits (66), Expect = 0.83
Identities = 27/124 (21%), Positives = 40/124 (32%), Gaps = 25/124 (20%)
Query: 528 RLLEELEHGQRGVGDGT------------ISWGLENDDDMTLTHWTGMIIGPPRTSTTGH 575
RLL+EL Q+ +S + D + W G I GP T G
Sbjct: 5 RLLKELADIQQLQRAHDSEPAATHSTSHGVSAQIVGGD---IHRWRGFIAGPLGTPYEGG 61
Query: 576 IMDTIIGYIMSVLNEILHLFWISRKPDNTLMINIKSNTGNTVCVNL-----DPASDIRNV 630
I + ++++ NI S TG C+++ PA IR
Sbjct: 62 HFTLDIVIPPDYPYNPPKMKFVTKIW----HPNISSQTGAI-CLDILKHEWSPALTIRTA 116
Query: 631 KEMI 634
I
Sbjct: 117 LLSI 120
>d1oeya_ d.15.2.2 (A:) Neutrophil cytosol factor 2 (p67phox
component of NADPH oxidase) {Human (Homo sapiens)
[TaxId: 9606]}
Length = 82
Score = 28.2 bits (63), Expect = 0.89
Identities = 12/50 (24%), Positives = 25/50 (50%)
Query: 616 TVCVNLDPASDIRNVKEMIAPKLGLKYEEVKIIFAGKELEDTTIISECDL 665
TV + P V++M++ KL L+ E K+ + ++ + +SE +
Sbjct: 15 TVVMKTQPGLPYSQVRDMVSKKLELRLEHTKLSYRPRDSNELVPLSEDSM 64
>d2e2ca_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Clam
(Spisula solidissima), E-2C [TaxId: 6584]}
Length = 156
Score = 29.3 bits (65), Expect = 1.1
Identities = 16/103 (15%), Positives = 32/103 (31%), Gaps = 5/103 (4%)
Query: 528 RLLEELEHGQRGVGDGTISWGLENDDDMTLTHWTGMIIGPPRTSTTGHIMDTIIGYIMSV 587
RL +EL GD I+ + D+ L W + GP T + +
Sbjct: 13 RLQQELRTLLMS-GDPGITAFPDGDN---LFKWVATLDGPKDTVYESLKYKLTLEFPSDY 68
Query: 588 LNEILHLFWISRKPDNTLMINIKSNTGNTVCVNLDPASDIRNV 630
+ + + + + + N + D+R +
Sbjct: 69 PYKPPVVKFTTPCWHPNVDQSGNICLDILK-ENWTASYDVRTI 110
>d1d8wa_ c.1.15.2 (A:) L-rhamnose isomerase {Escherichia coli
[TaxId: 562]}
Length = 416
Score = 29.3 bits (66), Expect = 2.2
Identities = 15/44 (34%), Positives = 20/44 (45%), Gaps = 4/44 (9%)
Query: 276 AHLVSWCDP---GF-FHPTCIAHVKSGDEFSTSKKDRDIRNKEI 315
+ V W G F+P+C +H S D F+ S D IR I
Sbjct: 114 KNWVEWAKANQLGLDFNPSCFSHPLSADGFTLSHADDSIRQFWI 157
>d2bepa1 d.20.1.1 (A:1-154) Ubiquitin-conjugating enzyme E2-25 kDa,
E2 domain {Cow (Bos taurus) [TaxId: 9913]}
Length = 154
Score = 27.9 bits (61), Expect = 3.1
Identities = 22/113 (19%), Positives = 35/113 (30%), Gaps = 13/113 (11%)
Query: 528 RLLEELEHGQRG--VGDGTISWGLENDDDMTLTHWTGMIIGPPRTSTTGHIMDTIIGYIM 585
R+ E + + I L +++ T G I GPP T G I
Sbjct: 8 RIKREFKEVLKSEETSKNQIKVDLVDEN---FTELRGEIAGPPDTPYEGGRYQLEIKIPE 64
Query: 586 SVLNEILHLFWISRKPDNTLMINIKSNTGNTVCVN----LDPASDIRNVKEMI 634
+ + +I++ NI S TG A +R V +
Sbjct: 65 TYPFNPPKVRFITKIW----HPNISSVTGAICLDILKDQWAAAMTLRTVLLSL 113
>d1pcaa1 d.58.3.1 (A:4A-99A) Procarboxypeptidase A {Pig (Sus scrofa)
[TaxId: 9823]}
Length = 94
Score = 26.7 bits (59), Expect = 3.3
Identities = 12/66 (18%), Positives = 24/66 (36%), Gaps = 17/66 (25%)
Query: 512 QKFSGAKVLLIVPRNFRLLEELEHGQRGVGDGTISWGLENDDDMTLTHWTGMIIGPPRTS 571
+ F G +VL I + +++++ LE+ + + L W GP R
Sbjct: 2 EDFVGHQVLRISVDDEAQVQKVKE-------------LEDLEHLQLDFWR----GPARPG 44
Query: 572 TTGHIM 577
+
Sbjct: 45 FPIDVR 50
>d2q5ba1 b.6.1.1 (A:1-105) Plastocyanin {Cyanobacterium (Phormidium
laminosum) [TaxId: 32059]}
Length = 105
Score = 27.1 bits (59), Expect = 3.6
Identities = 6/27 (22%), Positives = 10/27 (37%)
Query: 762 TEEHCTTGPVSWAEFYFKCAQHVSANM 788
+ E + + + CA H A M
Sbjct: 71 SYEITFSSDFPAGTYTYYCAPHRGAGM 97
>d1ayza_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Baker's
yeast (Saccharomyces cerevisiae), ubc2 (RAD6) [TaxId:
4932]}
Length = 153
Score = 27.4 bits (60), Expect = 5.1
Identities = 19/103 (18%), Positives = 37/103 (35%), Gaps = 5/103 (4%)
Query: 528 RLLEELEHGQRGVGDGTISWGLENDDDMTLTHWTGMIIGPPRTSTTGHIMDTIIGYIMSV 587
RL+ + + + G +S D+ M W MIIGP T ++ +
Sbjct: 7 RLMRDFKRMKEDAPPG-VSASPLPDNVM---VWNAMIIGPADTPYEDGTFRLLLEFDEEY 62
Query: 588 LNEILHLFWISRKPDNTLMINIKSNTGNTVCVNLDPASDIRNV 630
N+ H+ ++S + N + P D+ ++
Sbjct: 63 PNKPPHVKFLSEMFHPNVYANGEICLDILQNRW-TPTYDVASI 104
>d2cwla1 a.25.1.3 (A:1-299) Manganese catalase (T-catalase) {Thermus
thermophilus [TaxId: 274]}
Length = 299
Score = 27.6 bits (61), Expect = 6.5
Identities = 20/68 (29%), Positives = 30/68 (44%), Gaps = 4/68 (5%)
Query: 199 SVAMHIIWNATNKLKKKIVKELKGHLREVATSEFGHLVLVTLLDNVDDTLLLKKALLPEL 258
S M+ ++ + N KK +K + +AT E GH+ LV N LL K +L
Sbjct: 38 STLMNYMYQSFNFRGKKALKPYYDLIANIATEELGHIELVAATIN----SLLAKNPGKDL 93
Query: 259 LAEVVPLA 266
V P +
Sbjct: 94 EEGVDPES 101
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.316 0.132 0.383
Gapped
Lambda K H
0.267 0.0603 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 2,919,593
Number of extensions: 138077
Number of successful extensions: 383
Number of sequences better than 10.0: 1
Number of HSP's gapped: 374
Number of HSP's successfully gapped: 63
Length of query: 816
Length of database: 2,407,596
Length adjustment: 93
Effective length of query: 723
Effective length of database: 1,130,706
Effective search space: 817500438
Effective search space used: 817500438
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 57 (26.0 bits)