BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy15036
(179 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3TSO|A Chain A, Structure Of The Cancer Associated Rab25 Protein In
Complex With Fip2
pdb|3TSO|B Chain B, Structure Of The Cancer Associated Rab25 Protein In
Complex With Fip2
Length = 178
Score = 55.5 bits (132), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 34/111 (30%), Positives = 56/111 (50%), Gaps = 11/111 (9%)
Query: 70 TVGIVFPAISV---TYSIGPRYFRFPLVSRFLSLTTGLYRGTMGFLLIFDVTNENSFKDV 126
T+G+ F +V T ++ + + + R+ ++T+ YRG +G LL+FD+T ++ V
Sbjct: 42 TIGVEFSTRTVMLGTAAVKAQIWDTAGLERYRAITSAYYRGAVGALLVFDLTKHQTYAVV 101
Query: 127 EKWLLQIKVMDGALFTHFELQIVFMR-GCLELLQRCREVVTPDQIMFGSTQ 176
E+WL + L+ H E IV M G L + REV T + MF
Sbjct: 102 ERWLKE-------LYDHAEATIVVMLVGNKSDLSQAREVPTEEARMFAENN 145
>pdb|2OIL|A Chain A, Crystal Structure Of Human Rab25 In Complex With Gdp
Length = 193
Score = 55.5 bits (132), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 34/111 (30%), Positives = 56/111 (50%), Gaps = 11/111 (9%)
Query: 70 TVGIVFPAISV---TYSIGPRYFRFPLVSRFLSLTTGLYRGTMGFLLIFDVTNENSFKDV 126
T+G+ F +V T ++ + + + R+ ++T+ YRG +G LL+FD+T ++ V
Sbjct: 57 TIGVEFSTRTVMLGTAAVKAQIWDTAGLERYRAITSAYYRGAVGALLVFDLTKHQTYAVV 116
Query: 127 EKWLLQIKVMDGALFTHFELQIVFMR-GCLELLQRCREVVTPDQIMFGSTQ 176
E+WL + L+ H E IV M G L + REV T + MF
Sbjct: 117 ERWLKE-------LYDHAEATIVVMLVGNKSDLSQAREVPTEEARMFAENN 160
>pdb|3DZ8|A Chain A, Crystal Structure Of Human Rab3b Gtpase Bound With Gdp
Length = 191
Score = 53.5 bits (127), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 21/40 (52%), Positives = 29/40 (72%)
Query: 95 SRFLSLTTGLYRGTMGFLLIFDVTNENSFKDVEKWLLQIK 134
R+ ++TT YRG MGF+L++D+TNE SF V+ W QIK
Sbjct: 83 ERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWATQIK 122
>pdb|3BC1|A Chain A, Crystal Structure Of The Complex Rab27a-slp2a
pdb|3BC1|E Chain E, Crystal Structure Of The Complex Rab27a-slp2a
Length = 195
Score = 53.1 bits (126), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 34/79 (43%), Positives = 44/79 (55%), Gaps = 13/79 (16%)
Query: 70 TVGIVFPAISVTY-SIGP-----RYFRFPL-------VSRFLSLTTGLYRGTMGFLLIFD 116
TVGI F V Y + GP R R L + RF SLTT +R MGFLL+FD
Sbjct: 43 TVGIDFREKRVVYRANGPDGAVGRGQRIHLQLWDTAGLERFRSLTTAFFRDAMGFLLLFD 102
Query: 117 VTNENSFKDVEKWLLQIKV 135
+TNE SF +V W+ Q+++
Sbjct: 103 LTNEQSFLNVRNWISQLQM 121
>pdb|3RAB|A Chain A, Gppnhp-bound Rab3a At 2.0 A Resolution
Length = 169
Score = 52.8 bits (125), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 21/40 (52%), Positives = 29/40 (72%)
Query: 95 SRFLSLTTGLYRGTMGFLLIFDVTNENSFKDVEKWLLQIK 134
R+ ++TT YRG MGF+L++D+TNE SF V+ W QIK
Sbjct: 65 ERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIK 104
>pdb|3BFK|A Chain A, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|B Chain B, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|C Chain C, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|D Chain D, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|E Chain E, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
Length = 181
Score = 51.6 bits (122), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 42/69 (60%), Gaps = 4/69 (5%)
Query: 70 TVGIVFPAISVTYS----IGPRYFRFPLVSRFLSLTTGLYRGTMGFLLIFDVTNENSFKD 125
T+G+ F S+ I + + R+ ++T+ YRG +G LL++D+T +NSF++
Sbjct: 39 TIGVEFATKSIQLKNNKIIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKKNSFEN 98
Query: 126 VEKWLLQIK 134
+EKWL +++
Sbjct: 99 IEKWLKELR 107
>pdb|2GF9|A Chain A, Crystal Structure Of Human Rab3d In Complex With Gdp
Length = 189
Score = 50.8 bits (120), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 20/40 (50%), Positives = 28/40 (70%)
Query: 95 SRFLSLTTGLYRGTMGFLLIFDVTNENSFKDVEKWLLQIK 134
R+ ++TT YRG MGFLL++D+ N+ SF V+ W QIK
Sbjct: 82 ERYRTITTAYYRGAMGFLLMYDIANQESFAAVQDWATQIK 121
>pdb|1ZBD|A Chain A, Structural Basis Of Rab Effector Specificity: Crystal
Structure Of The Small G Protein Rab3a Complexed With
The Effector Domain Of Rabphilin-3a
Length = 203
Score = 50.4 bits (119), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 20/41 (48%), Positives = 28/41 (68%)
Query: 94 VSRFLSLTTGLYRGTMGFLLIFDVTNENSFKDVEKWLLQIK 134
+ R+ ++TT YRG GF+L +D+TNE SF V+ W QIK
Sbjct: 67 LERYRTITTAYYRGAXGFILXYDITNEESFNAVQDWSTQIK 107
>pdb|2FU5|C Chain C, Structure Of Rab8 In Complex With Mss4
pdb|2FU5|D Chain D, Structure Of Rab8 In Complex With Mss4
Length = 183
Score = 50.4 bits (119), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 18/40 (45%), Positives = 28/40 (70%)
Query: 95 SRFLSLTTGLYRGTMGFLLIFDVTNENSFKDVEKWLLQIK 134
RF ++TT YRG MG +L++D+TNE SF ++ W+ I+
Sbjct: 68 ERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIE 107
>pdb|3QBT|A Chain A, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3QBT|C Chain C, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3QBT|E Chain E, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3QBT|G Chain G, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3TNF|A Chain A, Lida From Legionella In Complex With Active Rab8a
Length = 174
Score = 50.1 bits (118), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 18/40 (45%), Positives = 28/40 (70%)
Query: 95 SRFLSLTTGLYRGTMGFLLIFDVTNENSFKDVEKWLLQIK 134
RF ++TT YRG MG +L++D+TNE SF ++ W+ I+
Sbjct: 66 ERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIE 105
>pdb|2F7S|A Chain A, The Crystal Structure Of Human Rab27b Bound To Gdp
pdb|2F7S|B Chain B, The Crystal Structure Of Human Rab27b Bound To Gdp
Length = 217
Score = 49.3 bits (116), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/79 (39%), Positives = 43/79 (54%), Gaps = 13/79 (16%)
Query: 70 TVGIVFPAISVTYSI-GP-----RYFRFPLV-------SRFLSLTTGLYRGTMGFLLIFD 116
TVGI F V Y+ GP + F+ L RF SLTT +R MGFLL+FD
Sbjct: 57 TVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQERFRSLTTAFFRDAMGFLLMFD 116
Query: 117 VTNENSFKDVEKWLLQIKV 135
+T++ SF +V W+ Q++
Sbjct: 117 LTSQQSFLNVRNWMSQLQA 135
>pdb|2IEZ|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
pdb|2IEZ|B Chain B, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
pdb|2IEZ|H Chain H, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
pdb|2IEZ|I Chain I, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
Length = 220
Score = 48.5 bits (114), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 41/79 (51%), Gaps = 13/79 (16%)
Query: 70 TVGIVFPAISVTYS------IGPRYFRFPL-------VSRFLSLTTGLYRGTMGFLLIFD 116
TVGI F V Y + F+ L + RF SLTT +R MGFLL+FD
Sbjct: 43 TVGIDFREKRVVYDTQGADGASGKAFKVHLQLWDTAGLERFRSLTTAFFRDAMGFLLMFD 102
Query: 117 VTNENSFKDVEKWLLQIKV 135
+T++ SF +V W+ Q++
Sbjct: 103 LTSQQSFLNVRNWMSQLQA 121
>pdb|2IF0|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
pdb|2IF0|B Chain B, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
Length = 200
Score = 48.1 bits (113), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 41/79 (51%), Gaps = 13/79 (16%)
Query: 70 TVGIVFPAISVTYSI------GPRYFRFPL-------VSRFLSLTTGLYRGTMGFLLIFD 116
TVGI F V Y + F+ L + RF SLTT +R MGFLL+FD
Sbjct: 43 TVGIDFREKRVVYDTQGADGASGKAFKVHLQLWDTAGLERFRSLTTAFFRDAMGFLLMFD 102
Query: 117 VTNENSFKDVEKWLLQIKV 135
+T++ SF +V W+ Q++
Sbjct: 103 LTSQQSFLNVRNWMSQLQA 121
>pdb|3CPH|A Chain A, Crystal Structure Of Sec4 In Complex With Rab-Gdi
Length = 213
Score = 47.8 bits (112), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 31/105 (29%), Positives = 53/105 (50%), Gaps = 15/105 (14%)
Query: 70 TVGIVFPAISVTYSIGPRYFRFPL-----VSRFLSLTTGLYRGTMGFLLIFDVTNENSFK 124
T+GI F +V I + + L RF ++TT YRG MG +L++DVT+E +F
Sbjct: 52 TIGIDFKIKTV--DINGKKVKLQLWDTAGQERFRTITTAYYRGAMGIILVYDVTDERTFT 109
Query: 125 DVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQRCREVVTPDQ 169
++++W + + E Q++ + ++ R VVT DQ
Sbjct: 110 NIKQWFKTVNE-----HANDEAQLLLVGNKSDMETR---VVTADQ 146
>pdb|2EQB|A Chain A, Crystal Structure Of The Rab Gtpase Sec4p, The Sec2p Gef
Domain, And Phosphate Complex
Length = 174
Score = 47.0 bits (110), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 31/105 (29%), Positives = 53/105 (50%), Gaps = 15/105 (14%)
Query: 70 TVGIVFPAISVTYSIGPRYFRFPL-----VSRFLSLTTGLYRGTMGFLLIFDVTNENSFK 124
T+GI F +V I + + L RF ++TT YRG MG +L++DVT+E +F
Sbjct: 39 TIGIDFKIKTV--DINGKKVKLQLWDTAGQERFRTITTAYYRGAMGIILVYDVTDERTFT 96
Query: 125 DVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQRCREVVTPDQ 169
++++W + + E Q++ + ++ R VVT DQ
Sbjct: 97 NIKQWFKTVNE-----HANDEAQLLLVGNKSDMETR---VVTADQ 133
>pdb|2HV8|A Chain A, Crystal Structure Of Gtp-Bound Rab11 In Complex With Fip3
pdb|2HV8|B Chain B, Crystal Structure Of Gtp-Bound Rab11 In Complex With Fip3
pdb|2HV8|C Chain C, Crystal Structure Of Gtp-Bound Rab11 In Complex With Fip3
Length = 172
Score = 46.2 bits (108), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/108 (25%), Positives = 54/108 (50%), Gaps = 11/108 (10%)
Query: 70 TVGIVFPAISVTY---SIGPRYFRFPLVSRFLSLTTGLYRGTMGFLLIFDVTNENSFKDV 126
T+G+ F S+ +I + + + R+ ++T+ YRG +G LL++D+ ++++V
Sbjct: 40 TIGVEFATRSIQVDGKTIKAQIWDTAGLERYRAITSAYYRGAVGALLVYDIAKHLTYENV 99
Query: 127 EKWLLQIKVMDGALFTHFELQIVFMR-GCLELLQRCREVVTPDQIMFG 173
E+WL +++ H + IV M G L+ R V T + F
Sbjct: 100 ERWLKELR-------DHADSNIVIMLVGNKSDLRHLRAVPTDEARAFA 140
>pdb|1OIW|A Chain A, X-ray Structure Of The Small G Protein Rab11a In Complex
With Gtpgammas
pdb|1OIX|A Chain A, X-Ray Structure Of The Small G Protein Rab11a In Complex
With Gdp And Pi
Length = 191
Score = 46.2 bits (108), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/109 (25%), Positives = 54/109 (49%), Gaps = 11/109 (10%)
Query: 70 TVGIVFPAISVTY---SIGPRYFRFPLVSRFLSLTTGLYRGTMGFLLIFDVTNENSFKDV 126
T+G+ F S+ +I + + + R+ ++T+ YRG +G LL++D+ ++++V
Sbjct: 61 TIGVEFATRSIQVDGKTIKAQIWDTAGLERYRAITSAYYRGAVGALLVYDIAKHLTYENV 120
Query: 127 EKWLLQIKVMDGALFTHFELQIVFM-RGCLELLQRCREVVTPDQIMFGS 174
E+WL +++ H + IV M G L+ R V T + F
Sbjct: 121 ERWLKELR-------DHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAE 162
>pdb|1G17|A Chain A, Crystal Structure Of Sec4-Guanosine-5'-(Beta,Gamma)-
Imidotriphosphate
pdb|1G17|B Chain B, Crystal Structure Of Sec4-Guanosine-5'-(Beta,Gamma)-
Imidotriphosphate
Length = 170
Score = 45.8 bits (107), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 42/75 (56%), Gaps = 8/75 (10%)
Query: 95 SRFLSLTTGLYRGTMGFLLIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGC 154
RF ++TT YRG MG +L++D+T+E +F ++++W + + E Q++ +
Sbjct: 63 ERFRTITTAYYRGAMGIILVYDITDERTFTNIKQWFKTVNE-----HANDEAQLLLVGNK 117
Query: 155 LELLQRCREVVTPDQ 169
++ R VVT DQ
Sbjct: 118 SDMETR---VVTADQ 129
>pdb|4FMB|B Chain B, Vira-Rab1 Complex Structure
pdb|4FMB|D Chain D, Vira-Rab1 Complex Structure
pdb|4FMB|F Chain F, Vira-Rab1 Complex Structure
Length = 171
Score = 45.4 bits (106), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 29/39 (74%)
Query: 95 SRFLSLTTGLYRGTMGFLLIFDVTNENSFKDVEKWLLQI 133
RF ++T+ YRG G ++++DVT++ SF +V++WL +I
Sbjct: 66 ERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEI 104
>pdb|3TKL|A Chain A, Crystal Structure Of The Gtp-Bound Rab1a In Complex With
The Coiled- Coil Domain Of Lida From Legionella
Pneumophila
Length = 196
Score = 45.4 bits (106), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 29/38 (76%)
Query: 96 RFLSLTTGLYRGTMGFLLIFDVTNENSFKDVEKWLLQI 133
RF ++T+ YRG G ++++DVT++ SF +V++WL +I
Sbjct: 77 RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEI 114
>pdb|1OIV|A Chain A, X-Ray Structure Of The Small G Protein Rab11a In Complex
With Gdp
pdb|1OIV|B Chain B, X-Ray Structure Of The Small G Protein Rab11a In Complex
With Gdp
Length = 191
Score = 45.4 bits (106), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/109 (25%), Positives = 53/109 (48%), Gaps = 11/109 (10%)
Query: 70 TVGIVFPAISVTY---SIGPRYFRFPLVSRFLSLTTGLYRGTMGFLLIFDVTNENSFKDV 126
T+G+ F S+ +I + + R+ ++T+ YRG +G LL++D+ ++++V
Sbjct: 61 TIGVEFATRSIQVDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENV 120
Query: 127 EKWLLQIKVMDGALFTHFELQIVFMR-GCLELLQRCREVVTPDQIMFGS 174
E+WL +++ H + IV M G L+ R V T + F
Sbjct: 121 ERWLKELR-------DHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAE 162
>pdb|4FMC|B Chain B, Espg-Rab1 Complex
pdb|4FMC|D Chain D, Espg-Rab1 Complex
pdb|4FMD|B Chain B, Espg-Rab1 Complex Structure At 3.05 A
pdb|4FMD|D Chain D, Espg-Rab1 Complex Structure At 3.05 A
pdb|4FME|B Chain B, Espg-Rab1-Arf6 Complex
pdb|4FME|E Chain E, Espg-Rab1-Arf6 Complex
Length = 171
Score = 45.4 bits (106), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 29/39 (74%)
Query: 95 SRFLSLTTGLYRGTMGFLLIFDVTNENSFKDVEKWLLQI 133
RF ++T+ YRG G ++++DVT++ SF +V++WL +I
Sbjct: 66 ERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEI 104
>pdb|4FMD|F Chain F, Espg-Rab1 Complex Structure At 3.05 A
Length = 164
Score = 45.4 bits (106), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 29/39 (74%)
Query: 95 SRFLSLTTGLYRGTMGFLLIFDVTNENSFKDVEKWLLQI 133
RF ++T+ YRG G ++++DVT++ SF +V++WL +I
Sbjct: 59 ERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEI 97
>pdb|2WWX|A Chain A, Crystal Structure Of The SidmDRRA(GEFGDF DOMAIN)-Rab1
(Gtpase Domain) Complex
Length = 175
Score = 45.4 bits (106), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 29/39 (74%)
Query: 95 SRFLSLTTGLYRGTMGFLLIFDVTNENSFKDVEKWLLQI 133
RF ++T+ YRG G ++++DVT++ SF +V++WL +I
Sbjct: 68 ERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEI 106
>pdb|3L0I|B Chain B, Complex Structure Of Sidm/drra With The Wild Type Rab1
pdb|3L0I|D Chain D, Complex Structure Of Sidm/drra With The Wild Type Rab1
Length = 199
Score = 45.1 bits (105), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 29/39 (74%)
Query: 95 SRFLSLTTGLYRGTMGFLLIFDVTNENSFKDVEKWLLQI 133
RF ++T+ YRG G ++++DVT++ SF +V++WL +I
Sbjct: 93 ERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEI 131
>pdb|2FOL|A Chain A, Crystal Structure Of Human Rab1a In Complex With Gdp
Length = 191
Score = 45.1 bits (105), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 29/39 (74%)
Query: 95 SRFLSLTTGLYRGTMGFLLIFDVTNENSFKDVEKWLLQI 133
RF ++T+ YRG G ++++DVT++ SF +V++WL +I
Sbjct: 85 ERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEI 123
>pdb|3SFV|A Chain A, Crystal Structure Of The Gdp-Bound Rab1a S25n Mutant In
Complex With The Coiled-Coil Domain Of Lida From
Legionella Pneumophila
Length = 181
Score = 45.1 bits (105), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 29/39 (74%)
Query: 95 SRFLSLTTGLYRGTMGFLLIFDVTNENSFKDVEKWLLQI 133
RF ++T+ YRG G ++++DVT++ SF +V++WL +I
Sbjct: 76 ERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEI 114
>pdb|1YZK|A Chain A, Gppnhp Bound Rab11 Gtpase
Length = 184
Score = 45.1 bits (105), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/108 (25%), Positives = 53/108 (49%), Gaps = 11/108 (10%)
Query: 70 TVGIVFPAISVTY---SIGPRYFRFPLVSRFLSLTTGLYRGTMGFLLIFDVTNENSFKDV 126
T+G+ F S+ +I + + R+ ++T+ YRG +G LL++D+ ++++V
Sbjct: 52 TIGVEFATRSIQVDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENV 111
Query: 127 EKWLLQIKVMDGALFTHFELQIVFM-RGCLELLQRCREVVTPDQIMFG 173
E+WL +++ H + IV M G L+ R V T + F
Sbjct: 112 ERWLKELR-------DHADSNIVIMLVGNKSDLRHLRAVPTDEARAFA 152
>pdb|2GZD|A Chain A, Crystal Structure Of Rab11 In Complex With Rab11-Fip2
pdb|2GZD|B Chain B, Crystal Structure Of Rab11 In Complex With Rab11-Fip2
pdb|2GZH|A Chain A, Crystal Structure Of Rab11 In Complex With Rab11-Family
Interacting Protein 2
Length = 173
Score = 44.7 bits (104), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 27/109 (24%), Positives = 54/109 (49%), Gaps = 11/109 (10%)
Query: 70 TVGIVFPAISVTY---SIGPRYFRFPLVSRFLSLTTGLYRGTMGFLLIFDVTNENSFKDV 126
T+G+ F S+ +I + + + R+ ++T+ YRG +G LL++D+ ++++V
Sbjct: 43 TIGVEFATRSIQVDGKTIKAQIWDTAGLERYRAITSAYYRGAVGALLVYDIAKHLTYENV 102
Query: 127 EKWLLQIKVMDGALFTHFELQIVF-MRGCLELLQRCREVVTPDQIMFGS 174
E+WL +++ H + IV + G L+ R V T + F
Sbjct: 103 ERWLKELR-------DHADSNIVIXLVGNKSDLRHLRAVPTDEARAFAE 144
>pdb|2D7C|A Chain A, Crystal Structure Of Human Rab11 In Complex With Fip3 Rab-
Binding Domain
pdb|2D7C|B Chain B, Crystal Structure Of Human Rab11 In Complex With Fip3 Rab-
Binding Domain
Length = 167
Score = 44.7 bits (104), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 27/108 (25%), Positives = 54/108 (50%), Gaps = 11/108 (10%)
Query: 70 TVGIVFPAISVTY---SIGPRYFRFPLVSRFLSLTTGLYRGTMGFLLIFDVTNENSFKDV 126
T+G+ F S+ +I + + + R+ ++T+ YRG +G LL++D+ ++++V
Sbjct: 37 TIGVEFATRSIQVDGKTIKAQIWDTAGLERYRAITSAYYRGAVGALLVYDIAKHLTYENV 96
Query: 127 EKWLLQIKVMDGALFTHFELQIVF-MRGCLELLQRCREVVTPDQIMFG 173
E+WL +++ H + IV + G L+ R V T + F
Sbjct: 97 ERWLKELR-------DHADSNIVIXLVGNKSDLRHLRAVPTDEARAFA 137
>pdb|4FMC|F Chain F, Espg-Rab1 Complex
Length = 117
Score = 44.7 bits (104), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 29/39 (74%)
Query: 95 SRFLSLTTGLYRGTMGFLLIFDVTNENSFKDVEKWLLQI 133
RF ++T+ YRG G ++++DVT++ SF +V++WL +I
Sbjct: 58 ERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEI 96
>pdb|2RHD|A Chain A, Crystal Structure Of Cryptosporidium Parvum Small Gtpase
Rab1a
Length = 175
Score = 44.7 bits (104), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 29/39 (74%)
Query: 95 SRFLSLTTGLYRGTMGFLLIFDVTNENSFKDVEKWLLQI 133
RF ++T+ YRG G ++++DVT+ +SF +V++W+ +I
Sbjct: 69 ERFRTITSSYYRGAHGIIIVYDVTDRDSFDNVKQWIQEI 107
>pdb|2F9L|A Chain A, 3d Structure Of Inactive Human Rab11b Gtpase
pdb|2F9M|A Chain A, 3d Structure Of Active Human Rab11b Gtpase
Length = 199
Score = 44.3 bits (103), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 28/112 (25%), Positives = 53/112 (47%), Gaps = 11/112 (9%)
Query: 70 TVGIVFPAISVTY---SIGPRYFRFPLVSRFLSLTTGLYRGTMGFLLIFDVTNENSFKDV 126
T+G+ F S+ +I + + R+ +T+ YRG +G LL++D+ ++++V
Sbjct: 37 TIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRITSAYYRGAVGALLVYDIAKHLTYENV 96
Query: 127 EKWLLQIKVMDGALFTHFELQIVFM-RGCLELLQRCREVVTPDQIMFGSTQS 177
E+WL +++ H + IV M G L+ R V T + F +
Sbjct: 97 ERWLKELR-------DHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNN 141
>pdb|3JZA|A Chain A, Crystal Structure Of Human Rab1b In Complex With The Gef
Domain Of DrraSIDM FROM LEGIONELLA PNEUMOPHILA
pdb|3NKV|A Chain A, Crystal Structure Of Rab1b Covalently Modified With Amp At
Y77
pdb|3NKV|B Chain B, Crystal Structure Of Rab1b Covalently Modified With Amp At
Y77
pdb|4HLQ|B Chain B, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|D Chain D, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|F Chain F, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|H Chain H, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|J Chain J, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
Length = 175
Score = 43.9 bits (102), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 29/39 (74%)
Query: 95 SRFLSLTTGLYRGTMGFLLIFDVTNENSFKDVEKWLLQI 133
RF ++T+ YRG G ++++DVT++ S+ +V++WL +I
Sbjct: 69 ERFRTITSSYYRGAHGIIVVYDVTDQESYANVKQWLQEI 107
>pdb|4I1O|A Chain A, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
pdb|4I1O|C Chain C, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
pdb|4I1O|E Chain E, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
pdb|4I1O|G Chain G, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
Length = 181
Score = 43.9 bits (102), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 29/39 (74%)
Query: 95 SRFLSLTTGLYRGTMGFLLIFDVTNENSFKDVEKWLLQI 133
RF ++T+ YRG G ++++DVT++ S+ +V++WL +I
Sbjct: 69 ERFRTITSSYYRGAHGIIVVYDVTDQESYANVKQWLQEI 107
>pdb|2IEY|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Hexagonal Space Group
pdb|2IEY|B Chain B, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Hexagonal Space Group
Length = 195
Score = 43.9 bits (102), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 38/79 (48%), Gaps = 13/79 (16%)
Query: 70 TVGIVFPAISVTYSI------GPRYFRFPL-------VSRFLSLTTGLYRGTMGFLLIFD 116
TVGI F V Y + F+ L + RF SLTT +R GFLL FD
Sbjct: 43 TVGIDFREKRVVYDTQGADGASGKAFKVHLQLWDTAGLERFRSLTTAFFRDAXGFLLXFD 102
Query: 117 VTNENSFKDVEKWLLQIKV 135
+T++ SF +V W Q++
Sbjct: 103 LTSQQSFLNVRNWXSQLQA 121
>pdb|3TW8|B Chain B, Gef Domain Of Dennd 1b In Complex With Rab Gtpase Rab35
pdb|3TW8|D Chain D, Gef Domain Of Dennd 1b In Complex With Rab Gtpase Rab35
Length = 181
Score = 43.9 bits (102), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 44/74 (59%), Gaps = 3/74 (4%)
Query: 64 TGTHGKTVGIVFPAISVTYS---IGPRYFRFPLVSRFLSLTTGLYRGTMGFLLIFDVTNE 120
+G++ T+G+ F +V + + + + RF ++T+ YRGT G ++++DVT+
Sbjct: 35 SGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQERFRTITSTYYRGTHGVIVVYDVTSA 94
Query: 121 NSFKDVEKWLLQIK 134
SF +V++WL +I
Sbjct: 95 ESFVNVKRWLHEIN 108
>pdb|2OCY|C Chain C, Complex Of The Guanine Exchange Factor Sec2p And The Rab
Gtpase Sec4p
Length = 170
Score = 43.9 bits (102), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 51/105 (48%), Gaps = 15/105 (14%)
Query: 70 TVGIVFPAISVTYSIGPRYFRFPL-----VSRFLSLTTGLYRGTMGFLLIFDVTNENSFK 124
T+GI F +V I + + L RF ++TT YRG G +L++DVT+E +F
Sbjct: 35 TIGIDFKIKTV--DINGKKVKLQLWDTAGQERFRTITTAYYRGAXGIILVYDVTDERTFT 92
Query: 125 DVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQRCREVVTPDQ 169
++++W + + E Q++ + + R VVT DQ
Sbjct: 93 NIKQWFKTVNE-----HANDEAQLLLVGNKSDXETR---VVTADQ 129
>pdb|2ZET|A Chain A, Crystal Structure Of The Small Gtpase Rab27b Complexed
With The Slp Homology Domain Of Slac2-AMELANOPHILIN
pdb|2ZET|B Chain B, Crystal Structure Of The Small Gtpase Rab27b Complexed
With The Slp Homology Domain Of Slac2-AMELANOPHILIN
Length = 203
Score = 43.5 bits (101), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 38/79 (48%), Gaps = 13/79 (16%)
Query: 70 TVGIVFPAISVTYSI------GPRYFRFPL-------VSRFLSLTTGLYRGTMGFLLIFD 116
TVGI F V Y + F+ L + RF SLTT +R GFLL FD
Sbjct: 43 TVGIDFREKRVVYDTQGADGASGKAFKVHLQLWDTAGLERFRSLTTAFFRDAXGFLLXFD 102
Query: 117 VTNENSFKDVEKWLLQIKV 135
+T++ SF +V W Q++
Sbjct: 103 LTSQQSFLNVRNWXSQLQA 121
>pdb|1YZN|A Chain A, Gppnhp-Bound Ypt1p Gtpase
Length = 185
Score = 43.1 bits (100), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 28/39 (71%)
Query: 95 SRFLSLTTGLYRGTMGFLLIFDVTNENSFKDVEKWLLQI 133
RF ++T+ YRG+ G ++++DVT++ SF V+ WL +I
Sbjct: 81 ERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEI 119
>pdb|2BCG|Y Chain Y, Structure Of Doubly Prenylated Ypt1:gdi Complex
Length = 206
Score = 42.7 bits (99), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 28/38 (73%)
Query: 96 RFLSLTTGLYRGTMGFLLIFDVTNENSFKDVEKWLLQI 133
RF ++T+ YRG+ G ++++DVT++ SF V+ WL +I
Sbjct: 69 RFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEI 106
>pdb|1UKV|Y Chain Y, Structure Of Rabgdp-Dissociation Inhibitor In Complex With
Prenylated Ypt1 Gtpase
pdb|3CUE|F Chain F, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
pdb|3CUE|L Chain L, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
pdb|3CUE|R Chain R, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
pdb|3CUE|X Chain X, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
Length = 206
Score = 42.7 bits (99), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 28/38 (73%)
Query: 96 RFLSLTTGLYRGTMGFLLIFDVTNENSFKDVEKWLLQI 133
RF ++T+ YRG+ G ++++DVT++ SF V+ WL +I
Sbjct: 69 RFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEI 106
>pdb|1G16|A Chain A, Crystal Structure Of Sec4-Gdp
pdb|1G16|B Chain B, Crystal Structure Of Sec4-Gdp
pdb|1G16|C Chain C, Crystal Structure Of Sec4-Gdp
pdb|1G16|D Chain D, Crystal Structure Of Sec4-Gdp
Length = 170
Score = 42.7 bits (99), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 40/75 (53%), Gaps = 8/75 (10%)
Query: 95 SRFLSLTTGLYRGTMGFLLIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGC 154
RF ++TT YRG G +L++D+T+E +F ++++W + + E Q++ +
Sbjct: 63 ERFRTITTAYYRGAXGIILVYDITDERTFTNIKQWFKTVNE-----HANDEAQLLLVGNK 117
Query: 155 LELLQRCREVVTPDQ 169
+ R VVT DQ
Sbjct: 118 SDXETR---VVTADQ 129
>pdb|2G6B|A Chain A, Crystal Structure Of Human Rab26 In Complex With A Gtp
Analogue
Length = 180
Score = 42.4 bits (98), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 25/39 (64%)
Query: 95 SRFLSLTTGLYRGTMGFLLIFDVTNENSFKDVEKWLLQI 133
RF S+T YR LL++DVTN+ SF +++ WL +I
Sbjct: 71 ERFRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEI 109
>pdb|1Z0K|A Chain A, Structure Of Gtp-Bound Rab4q67l Gtpase In Complex With The
Central Rab Binding Domain Of Rabenosyn-5
pdb|1Z0K|C Chain C, Structure Of Gtp-Bound Rab4q67l Gtpase In Complex With The
Central Rab Binding Domain Of Rabenosyn-5
Length = 172
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 39/72 (54%), Gaps = 7/72 (9%)
Query: 70 TVGIVFPAISVTYSIGPRYFRFPL-----VSRFLSLTTGLYRGTMGFLLIFDVTNENSFK 124
T+G+ F S ++G +Y + + + RF S+T YRG G LL++D+T+ ++
Sbjct: 40 TIGVEFG--SKIINVGGKYVKLQIWDTAGLERFRSVTRSYYRGAAGALLVYDITSRETYN 97
Query: 125 DVEKWLLQIKVM 136
+ WL +++
Sbjct: 98 ALTNWLTDARML 109
>pdb|4DKX|A Chain A, Crystal Structure Of The Rab 6a'(Q72l)
pdb|4DKX|B Chain B, Crystal Structure Of The Rab 6a'(Q72l)
Length = 216
Score = 41.6 bits (96), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 40/80 (50%), Gaps = 7/80 (8%)
Query: 65 GTHGKTVGIVFPAISVTYSIGPRYFRFPL-----VSRFLSLTTGLYRGTMGFLLIFDVTN 119
T+ T+GI F +S T + R R L + RF SL R + ++++D+TN
Sbjct: 40 NTYQATIGIDF--LSKTMYLEDRTIRLQLWDTAGLERFRSLIPSYIRDSAAAVVVYDITN 97
Query: 120 ENSFKDVEKWLLQIKVMDGA 139
NSF+ KW+ ++ G+
Sbjct: 98 VNSFQQTTKWIDDVRTERGS 117
>pdb|2BMD|A Chain A, High Resolution Structure Of Gdp-Bound Human Rab4a
pdb|2BME|A Chain A, High Resolution Structure Of Gppnhp-Bound Human Rab4a
pdb|2BME|B Chain B, High Resolution Structure Of Gppnhp-Bound Human Rab4a
pdb|2BME|C Chain C, High Resolution Structure Of Gppnhp-Bound Human Rab4a
pdb|2BME|D Chain D, High Resolution Structure Of Gppnhp-Bound Human Rab4a
Length = 186
Score = 41.2 bits (95), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 38/72 (52%), Gaps = 7/72 (9%)
Query: 70 TVGIVFPAISVTYSIGPRYFRFPL-----VSRFLSLTTGLYRGTMGFLLIFDVTNENSFK 124
T+G+ F S ++G +Y + + RF S+T YRG G LL++D+T+ ++
Sbjct: 42 TIGVEFG--SKIINVGGKYVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYN 99
Query: 125 DVEKWLLQIKVM 136
+ WL +++
Sbjct: 100 ALTNWLTDARML 111
>pdb|2EFC|B Chain B, Ara7-GdpATVPS9A
pdb|2EFC|D Chain D, Ara7-GdpATVPS9A
pdb|2EFD|B Chain B, Ara7ATVPS9A
pdb|2EFD|D Chain D, Ara7ATVPS9A
pdb|2EFE|B Chain B, Ara7-Gdpnh2ATVPS9A
pdb|2EFE|D Chain D, Ara7-Gdpnh2ATVPS9A
pdb|2EFH|B Chain B, Ara7-GdpATVPS9A(D185N)
pdb|2EFH|D Chain D, Ara7-GdpATVPS9A(D185N)
pdb|4G01|B Chain B, Ara7-gdp-ca2+/vps9a
Length = 181
Score = 41.2 bits (95), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 37/72 (51%), Gaps = 7/72 (9%)
Query: 70 TVGIVFPAISVTYSIGPRYFRFPL-----VSRFLSLTTGLYRGTMGFLLIFDVTNENSFK 124
T+G F S T ++ +F + R+ SL YRG +++FDVTN+ SF+
Sbjct: 44 TIGAAF--FSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVFDVTNQASFE 101
Query: 125 DVEKWLLQIKVM 136
+KW+ +++
Sbjct: 102 RAKKWVQELQAQ 113
>pdb|2IL1|A Chain A, Crystal Structure Of A Predicted Human Gtpase In Complex
With Gdp
Length = 192
Score = 41.2 bits (95), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 32/55 (58%), Gaps = 3/55 (5%)
Query: 95 SRFLSLTTGLYRGTMGFLLIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIV 149
RF S+T+ YR G +L++D+T + +F D+ KW+ K++D EL +V
Sbjct: 86 ERFNSITSAYYRSAKGIILVYDITKKETFDDLPKWM---KMIDKYASEDAELLLV 137
>pdb|1YU9|A Chain A, Gppnhp-Bound Rab4a
Length = 175
Score = 41.2 bits (95), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 38/72 (52%), Gaps = 7/72 (9%)
Query: 70 TVGIVFPAISVTYSIGPRYFRFPL-----VSRFLSLTTGLYRGTMGFLLIFDVTNENSFK 124
T+G+ F S ++G +Y + + RF S+T YRG G LL++D+T+ ++
Sbjct: 43 TIGVEFG--SKIINVGGKYVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYN 100
Query: 125 DVEKWLLQIKVM 136
+ WL +++
Sbjct: 101 ALTNWLTDARML 112
>pdb|3RWM|B Chain B, Crystal Structure Of Ypt32 In Complex With Gppnhp
pdb|3RWO|B Chain B, Crystal Structure Of Ypt32 In Complex With Gdp
pdb|3RWO|A Chain A, Crystal Structure Of Ypt32 In Complex With Gdp
Length = 185
Score = 40.4 bits (93), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 15/68 (22%), Positives = 39/68 (57%), Gaps = 3/68 (4%)
Query: 70 TVGIVFPAISV---TYSIGPRYFRFPLVSRFLSLTTGLYRGTMGFLLIFDVTNENSFKDV 126
T+G+ F ++ I + + + R+ ++T+ YRG +G L+++D++ +S+++
Sbjct: 42 TIGVEFATRTIEVENKKIKAQIWDTAGLERYRAITSAYYRGAVGALIVYDISKSSSYENC 101
Query: 127 EKWLLQIK 134
WL +++
Sbjct: 102 NHWLTELR 109
>pdb|1YZT|A Chain A, Gppnhp-Bound Rab21 Gtpase At 2.05 A Resolution
pdb|1YZT|B Chain B, Gppnhp-Bound Rab21 Gtpase At 2.05 A Resolution
Length = 184
Score = 40.4 bits (93), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 30/44 (68%)
Query: 95 SRFLSLTTGLYRGTMGFLLIFDVTNENSFKDVEKWLLQIKVMDG 138
RF +L YR + G +L++D+T+E+SF+ V+ W+ +++ M G
Sbjct: 80 ERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLG 123
>pdb|1YZQ|A Chain A, Gppnhp-Bound Rab6 Gtpase
Length = 170
Score = 40.4 bits (93), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 39/80 (48%), Gaps = 7/80 (8%)
Query: 65 GTHGKTVGIVFPAISVTYSIGPRYFRFPL-----VSRFLSLTTGLYRGTMGFLLIFDVTN 119
T+ T+GI F +S T + R R L RF SL R + ++++D+TN
Sbjct: 33 NTYQATIGIDF--LSKTMYLEDRTIRLQLWDTAGQERFRSLIPSYIRDSAAAVVVYDITN 90
Query: 120 ENSFKDVEKWLLQIKVMDGA 139
NSF+ KW+ ++ G+
Sbjct: 91 VNSFQQTTKWIDDVRTERGS 110
>pdb|1YZU|A Chain A, Gppnhp-Bound Rab21 Gtpase At 2.50 A Resolution
pdb|1YZU|B Chain B, Gppnhp-Bound Rab21 Gtpase At 2.50 A Resolution
pdb|1Z0I|A Chain A, Gdp-Bound Rab21 Gtpase
pdb|2OT3|B Chain B, Crystal Structure Of Rabex-5 Vps9 Domain In Complex With
Nucleotide Free Rab21
Length = 170
Score = 40.0 bits (92), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 30/44 (68%)
Query: 95 SRFLSLTTGLYRGTMGFLLIFDVTNENSFKDVEKWLLQIKVMDG 138
RF +L YR + G +L++D+T+E+SF+ V+ W+ +++ M G
Sbjct: 66 ERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLG 109
>pdb|1Z08|A Chain A, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
pdb|1Z08|B Chain B, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
pdb|1Z08|C Chain C, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
pdb|1Z08|D Chain D, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
Length = 170
Score = 40.0 bits (92), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 30/44 (68%)
Query: 95 SRFLSLTTGLYRGTMGFLLIFDVTNENSFKDVEKWLLQIKVMDG 138
RF +L YR + G +L++D+T+E+SF+ V+ W+ +++ M G
Sbjct: 66 ERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLG 109
>pdb|3CWZ|A Chain A, Strucure Of Rab6(Gtp)-R6ip1 Complex
Length = 188
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 40/80 (50%), Gaps = 7/80 (8%)
Query: 65 GTHGKTVGIVFPAISVTYSIGPRYFRFPL-----VSRFLSLTTGLYRGTMGFLLIFDVTN 119
T+ T+GI F +S T + R R L + RF SL R + ++++D+TN
Sbjct: 33 NTYQATIGIDF--LSKTMYLEDRTVRLQLWDTAGLERFRSLIPSYIRDSTVAVVVYDITN 90
Query: 120 ENSFKDVEKWLLQIKVMDGA 139
NSF+ KW+ ++ G+
Sbjct: 91 VNSFQQTTKWIDDVRTERGS 110
>pdb|3CPJ|B Chain B, Crystal Structure Of Ypt31 In Complex With Yeast Rab-Gdi
Length = 223
Score = 39.3 bits (90), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 11/39 (28%), Positives = 28/39 (71%)
Query: 96 RFLSLTTGLYRGTMGFLLIFDVTNENSFKDVEKWLLQIK 134
R+ ++T+ YRG +G L+++D++ +S+++ WL +++
Sbjct: 74 RYRAITSAYYRGAVGALIVYDISKSSSYENCNHWLSELR 112
>pdb|1X3S|A Chain A, Crystal Structure Of Human Rab18 In Complex With Gppnhp
Length = 195
Score = 38.9 bits (89), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 26/40 (65%)
Query: 95 SRFLSLTTGLYRGTMGFLLIFDVTNENSFKDVEKWLLQIK 134
RF +LT YRG G +L++DVT ++F ++ WL +++
Sbjct: 75 ERFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELE 114
>pdb|3BBP|A Chain A, Rab6-Gtp:gcc185 Rab Binding Domain Complex
pdb|3BBP|B Chain B, Rab6-Gtp:gcc185 Rab Binding Domain Complex
pdb|3BBP|C Chain C, Rab6-Gtp:gcc185 Rab Binding Domain Complex
Length = 211
Score = 38.9 bits (89), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 40/80 (50%), Gaps = 7/80 (8%)
Query: 65 GTHGKTVGIVFPAISVTYSIGPRYFRFPL-----VSRFLSLTTGLYRGTMGFLLIFDVTN 119
T+ T+GI F +S T + R R L + RF SL R + ++++D+TN
Sbjct: 43 NTYQATIGIDF--LSKTMYLEDRTVRLQLWDTAGLERFRSLIPSYIRDSTVAVVVYDITN 100
Query: 120 ENSFKDVEKWLLQIKVMDGA 139
NSF+ KW+ ++ G+
Sbjct: 101 VNSFQQTTKWIDDVRTERGS 120
>pdb|2Y8E|A Chain A, Crystal Structure Of D. Melanogaster Rab6 Gtpase Bound To
Gmppnp
pdb|2Y8E|B Chain B, Crystal Structure Of D. Melanogaster Rab6 Gtpase Bound To
Gmppnp
Length = 179
Score = 38.5 bits (88), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 48/109 (44%), Gaps = 13/109 (11%)
Query: 65 GTHGKTVGIVFPAISVTYSIGPRYFRFPL-----VSRFLSLTTGLYRGTMGFLLIFDVTN 119
T+ T+GI F +S T + R R L RF SL R + ++++D+TN
Sbjct: 41 NTYQATIGIDF--LSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITN 98
Query: 120 ENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQRCREVVTPD 168
NSF KW+ ++ G+ I+ + G L R+V T +
Sbjct: 99 TNSFHQTSKWIDDVRTERGSDV------IIMLVGNKTDLSDKRQVSTEE 141
>pdb|2FG5|A Chain A, Crystal Structure Of Human Rab31 In Complex With A Gtp
Analogue
Length = 192
Score = 38.5 bits (88), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 27/40 (67%)
Query: 95 SRFLSLTTGLYRGTMGFLLIFDVTNENSFKDVEKWLLQIK 134
RF SL YRG+ ++++D+T ++SF ++KW+ ++K
Sbjct: 83 ERFHSLAPMYYRGSAAAVIVYDITKQDSFYTLKKWVKELK 122
>pdb|2FE4|A Chain A, The Crystal Structure Of Human Neuronal Rab6b In Its
Inactive Gdp-Bound Form
pdb|2FFQ|A Chain A, The Crystal Structure Of Human Neuronal Rab6b In Its
Active Gtpgs-Bound Form
pdb|2E9S|A Chain A, Human Neuronal Rab6b In Three Intermediate Forms
pdb|2E9S|B Chain B, Human Neuronal Rab6b In Three Intermediate Forms
pdb|2E9S|C Chain C, Human Neuronal Rab6b In Three Intermediate Forms
Length = 171
Score = 38.5 bits (88), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 39/80 (48%), Gaps = 7/80 (8%)
Query: 65 GTHGKTVGIVFPAISVTYSIGPRYFRFPL-----VSRFLSLTTGLYRGTMGFLLIFDVTN 119
T+ T+GI F +S T + R R L RF SL R + ++++D+TN
Sbjct: 29 NTYQATIGIDF--LSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITN 86
Query: 120 ENSFKDVEKWLLQIKVMDGA 139
NSF+ KW+ ++ G+
Sbjct: 87 LNSFQQTSKWIDDVRTERGS 106
>pdb|1TU4|A Chain A, Crystal Structure Of Rab5-Gdp Complex
pdb|1TU4|B Chain B, Crystal Structure Of Rab5-Gdp Complex
pdb|1TU4|C Chain C, Crystal Structure Of Rab5-Gdp Complex
pdb|1TU4|D Chain D, Crystal Structure Of Rab5-Gdp Complex
Length = 171
Score = 38.5 bits (88), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 13/39 (33%), Positives = 24/39 (61%)
Query: 96 RFLSLTTGLYRGTMGFLLIFDVTNENSFKDVEKWLLQIK 134
R+ SL YRG ++++D+TNE SF + W+ +++
Sbjct: 68 RYHSLAPXYYRGAQAAIVVYDITNEESFARAKNWVKELQ 106
>pdb|2GIL|A Chain A, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
pdb|2GIL|B Chain B, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
pdb|2GIL|C Chain C, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
pdb|2GIL|D Chain D, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
Length = 162
Score = 38.5 bits (88), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 39/80 (48%), Gaps = 7/80 (8%)
Query: 65 GTHGKTVGIVFPAISVTYSIGPRYFRFPL-----VSRFLSLTTGLYRGTMGFLLIFDVTN 119
T+ T+GI F +S T + R R L RF SL R + ++++D+TN
Sbjct: 28 NTYQATIGIDF--LSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITN 85
Query: 120 ENSFKDVEKWLLQIKVMDGA 139
NSF+ KW+ ++ G+
Sbjct: 86 VNSFQQTTKWIDDVRTERGS 105
>pdb|1KY2|A Chain A, Gppnhp-Bound Ypt7p At 1.6 A Resolution
pdb|1KY3|A Chain A, Gdp-Bound Ypt7p At 1.35 A Resolution
Length = 182
Score = 38.1 bits (87), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 23/34 (67%)
Query: 96 RFLSLTTGLYRGTMGFLLIFDVTNENSFKDVEKW 129
RF SL YRG +L++DVTN +SF++++ W
Sbjct: 70 RFQSLGVAFYRGADCCVLVYDVTNASSFENIKSW 103
>pdb|1Z0A|A Chain A, Gdp-Bound Rab2a Gtpase
pdb|1Z0A|B Chain B, Gdp-Bound Rab2a Gtpase
pdb|1Z0A|C Chain C, Gdp-Bound Rab2a Gtpase
pdb|1Z0A|D Chain D, Gdp-Bound Rab2a Gtpase
Length = 174
Score = 38.1 bits (87), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 33/67 (49%), Gaps = 3/67 (4%)
Query: 67 HGKTVGIVFPAISVTYS---IGPRYFRFPLVSRFLSLTTGLYRGTMGFLLIFDVTNENSF 123
H T+G+ F A +T I + + F S+T YRG G LL++D+T ++F
Sbjct: 39 HDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRDTF 98
Query: 124 KDVEKWL 130
+ WL
Sbjct: 99 NHLTTWL 105
>pdb|3MJH|A Chain A, Crystal Structure Of Human Rab5a In Complex With The C2h2
Zinc Finger Of Eea1
pdb|3MJH|C Chain C, Crystal Structure Of Human Rab5a In Complex With The C2h2
Zinc Finger Of Eea1
Length = 168
Score = 37.7 bits (86), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 13/41 (31%), Positives = 25/41 (60%)
Query: 94 VSRFLSLTTGLYRGTMGFLLIFDVTNENSFKDVEKWLLQIK 134
+ R+ SL YRG ++++D+TNE SF + W+ +++
Sbjct: 64 LERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQ 104
>pdb|1N6I|A Chain A, Crystal Structure Of Human Rab5a A30p Mutant Complex With
Gdp
pdb|1N6K|A Chain A, Crystal Structure Of Human Rab5a A30p Mutant Complex With
Gdp And Aluminum Fluoride
pdb|1N6L|A Chain A, Crystal Structure Of Human Rab5a A30p Mutant Complex With
Gtp
Length = 170
Score = 37.7 bits (86), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 13/39 (33%), Positives = 24/39 (61%)
Query: 96 RFLSLTTGLYRGTMGFLLIFDVTNENSFKDVEKWLLQIK 134
R+ SL YRG ++++D+TNE SF + W+ +++
Sbjct: 67 RYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQ 105
>pdb|2O52|A Chain A, Crystal Structure Of Human Rab4b In Complex With Gdp
pdb|2O52|B Chain B, Crystal Structure Of Human Rab4b In Complex With Gdp
Length = 200
Score = 37.7 bits (86), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 24/42 (57%)
Query: 95 SRFLSLTTGLYRGTMGFLLIFDVTNENSFKDVEKWLLQIKVM 136
RF S+T YRG G LL++D+T+ ++ + WL + +
Sbjct: 85 ERFRSVTRSYYRGAAGALLVYDITSRETYNSLAAWLTDARTL 126
>pdb|1TU3|A Chain A, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|B Chain B, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|C Chain C, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|D Chain D, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|E Chain E, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
Length = 171
Score = 37.7 bits (86), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 13/39 (33%), Positives = 24/39 (61%)
Query: 96 RFLSLTTGLYRGTMGFLLIFDVTNENSFKDVEKWLLQIK 134
R+ SL YRG ++++D+TNE SF + W+ +++
Sbjct: 68 RYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQ 106
>pdb|1N6H|A Chain A, Crystal Structure Of Human Rab5a
pdb|1R2Q|A Chain A, Crystal Structure Of Human Rab5a Gtpase Domain At 1.05 A
Resolution
Length = 170
Score = 37.7 bits (86), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 13/39 (33%), Positives = 24/39 (61%)
Query: 96 RFLSLTTGLYRGTMGFLLIFDVTNENSFKDVEKWLLQIK 134
R+ SL YRG ++++D+TNE SF + W+ +++
Sbjct: 67 RYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQ 105
>pdb|1N6O|A Chain A, Crystal Structure Of Human Rab5a A30k Mutant Complex With
Gppnhp
Length = 170
Score = 37.7 bits (86), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 13/39 (33%), Positives = 24/39 (61%)
Query: 96 RFLSLTTGLYRGTMGFLLIFDVTNENSFKDVEKWLLQIK 134
R+ SL YRG ++++D+TNE SF + W+ +++
Sbjct: 67 RYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQ 105
>pdb|1N6P|A Chain A, Crystal Structure Of Human Rab5a A30e Mutant Complex With
Gppnhp
Length = 170
Score = 37.4 bits (85), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 13/39 (33%), Positives = 24/39 (61%)
Query: 96 RFLSLTTGLYRGTMGFLLIFDVTNENSFKDVEKWLLQIK 134
R+ SL YRG ++++D+TNE SF + W+ +++
Sbjct: 67 RYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQ 105
>pdb|1N6N|A Chain A, Crystal Structure Of Human Rab5a A30r Mutant Complex With
Gppnhp
Length = 170
Score = 37.4 bits (85), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 13/39 (33%), Positives = 24/39 (61%)
Query: 96 RFLSLTTGLYRGTMGFLLIFDVTNENSFKDVEKWLLQIK 134
R+ SL YRG ++++D+TNE SF + W+ +++
Sbjct: 67 RYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQ 105
>pdb|1N6R|A Chain A, Crystal Structure Of Human Rab5a A30l Mutant Complex With
Gppnhp
Length = 170
Score = 37.4 bits (85), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 13/39 (33%), Positives = 24/39 (61%)
Query: 96 RFLSLTTGLYRGTMGFLLIFDVTNENSFKDVEKWLLQIK 134
R+ SL YRG ++++D+TNE SF + W+ +++
Sbjct: 67 RYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQ 105
>pdb|1T91|A Chain A, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
pdb|1T91|B Chain B, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
pdb|1T91|C Chain C, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
pdb|1T91|D Chain D, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
pdb|1YHN|A Chain A, Structure Basis Of Rilp Recruitment By Rab7
Length = 207
Score = 37.0 bits (84), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 22/36 (61%)
Query: 94 VSRFLSLTTGLYRGTMGFLLIFDVTNENSFKDVEKW 129
+ RF SL YRG +L+FDVT N+FK ++ W
Sbjct: 67 LERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSW 102
>pdb|3LAW|A Chain A, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|B Chain B, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|C Chain C, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|D Chain D, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|E Chain E, Structure Of Gtp-Bound L129f Mutant Rab7
Length = 207
Score = 37.0 bits (84), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 16/35 (45%), Positives = 21/35 (60%)
Query: 95 SRFLSLTTGLYRGTMGFLLIFDVTNENSFKDVEKW 129
RF SL YRG +L+FDVT N+FK ++ W
Sbjct: 68 ERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSW 102
>pdb|1VG0|B Chain B, The Crystal Structures Of The Rep-1 Protein In Complex
With Monoprenylated Rab7 Protein
pdb|1VG8|A Chain A, Gppnhp-Bound Rab7
pdb|1VG8|B Chain B, Gppnhp-Bound Rab7
pdb|1VG8|C Chain C, Gppnhp-Bound Rab7
pdb|1VG8|D Chain D, Gppnhp-Bound Rab7
Length = 207
Score = 37.0 bits (84), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 16/35 (45%), Positives = 21/35 (60%)
Query: 95 SRFLSLTTGLYRGTMGFLLIFDVTNENSFKDVEKW 129
RF SL YRG +L+FDVT N+FK ++ W
Sbjct: 68 ERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSW 102
>pdb|2EW1|A Chain A, Crystal Structure Of Rab30 In Complex With A Gtp Analogue
Length = 201
Score = 37.0 bits (84), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 36/71 (50%), Gaps = 3/71 (4%)
Query: 67 HGKTVGIVFPAISVTYS---IGPRYFRFPLVSRFLSLTTGLYRGTMGFLLIFDVTNENSF 123
G T+G+ F +V + + + + RF S+T YR +L +D+T E SF
Sbjct: 55 QGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRSITQSYYRSANALILTYDITCEESF 114
Query: 124 KDVEKWLLQIK 134
+ + +WL +I+
Sbjct: 115 RCLPEWLREIE 125
>pdb|2A5J|A Chain A, Crystal Structure Of Human Rab2b
Length = 191
Score = 37.0 bits (84), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 33/69 (47%), Gaps = 7/69 (10%)
Query: 67 HGKTVGIVFPAISVTYSIGPRYFRFPL-----VSRFLSLTTGLYRGTMGFLLIFDVTNEN 121
H T+G+ F A V +I + + + F S+T YRG G LL++D+T
Sbjct: 50 HDLTIGVEFGARMV--NIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRE 107
Query: 122 SFKDVEKWL 130
+F + WL
Sbjct: 108 TFNHLTSWL 116
>pdb|1VG1|A Chain A, Gdp-bound Rab7
pdb|1VG9|B Chain B, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
pdb|1VG9|D Chain D, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
pdb|1VG9|F Chain F, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
pdb|1VG9|H Chain H, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
Length = 185
Score = 36.6 bits (83), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 16/35 (45%), Positives = 21/35 (60%)
Query: 95 SRFLSLTTGLYRGTMGFLLIFDVTNENSFKDVEKW 129
RF SL YRG +L+FDVT N+FK ++ W
Sbjct: 68 ERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSW 102
>pdb|1D5C|A Chain A, Crystal Structure Of Plasmodium Falciparum Rab6 Complexed
With Gdp
Length = 162
Score = 36.2 bits (82), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 35/74 (47%), Gaps = 7/74 (9%)
Query: 65 GTHGKTVGIVFPAISVTYSIGPRYFRFPL-----VSRFLSLTTGLYRGTMGFLLIFDVTN 119
+ T+GI F + ++ GP R L RF SL R + ++++D+TN
Sbjct: 28 NNYQSTIGIDFLSKTLYLDEGP--VRLQLWDTAGQERFRSLIPSYIRDSAAAIVVYDITN 85
Query: 120 ENSFKDVEKWLLQI 133
SF++ KW+ I
Sbjct: 86 RQSFENTTKWIQDI 99
>pdb|1Z0F|A Chain A, Gdp-Bound Rab14 Gtpase
Length = 179
Score = 35.8 bits (81), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 12/40 (30%), Positives = 23/40 (57%)
Query: 95 SRFLSLTTGLYRGTMGFLLIFDVTNENSFKDVEKWLLQIK 134
RF ++T YRG G L+++D+T +++ + WL +
Sbjct: 75 ERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDAR 114
>pdb|4DRZ|A Chain A, Crystal Structure Of Human Rab14
Length = 196
Score = 35.4 bits (80), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 12/35 (34%), Positives = 22/35 (62%)
Query: 96 RFLSLTTGLYRGTMGFLLIFDVTNENSFKDVEKWL 130
RF ++T YRG G L+++D+T +++ + WL
Sbjct: 91 RFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWL 125
>pdb|1Z0J|A Chain A, Structure Of Gtp-Bound Rab22q64l Gtpase In Complex With
The Minimal Rab Binding Domain Of Rabenosyn-5
Length = 170
Score = 35.0 bits (79), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 11/41 (26%), Positives = 26/41 (63%)
Query: 94 VSRFLSLTTGLYRGTMGFLLIFDVTNENSFKDVEKWLLQIK 134
+ RF +L YRG+ ++++D+T E +F ++ W+ +++
Sbjct: 65 LERFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELR 105
>pdb|2P5S|A Chain A, Rab Domain Of Human Rasef In Complex With Gdp
pdb|2P5S|B Chain B, Rab Domain Of Human Rasef In Complex With Gdp
Length = 199
Score = 35.0 bits (79), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 24/40 (60%)
Query: 95 SRFLSLTTGLYRGTMGFLLIFDVTNENSFKDVEKWLLQIK 134
RF S+ +R G LL++DVT E SF ++ +W+ I+
Sbjct: 88 ERFRSIAKSYFRKADGVLLLYDVTCEKSFLNIREWVDMIE 127
>pdb|1YVD|A Chain A, Gppnhp-Bound Rab22 Gtpase
Length = 169
Score = 35.0 bits (79), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 11/40 (27%), Positives = 25/40 (62%)
Query: 95 SRFLSLTTGLYRGTMGFLLIFDVTNENSFKDVEKWLLQIK 134
RF +L YRG+ ++++D+T E +F ++ W+ +++
Sbjct: 65 ERFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELR 104
>pdb|2HEI|A Chain A, Crystal Structure Of Human Rab5b In Complex With Gdp
pdb|2HEI|B Chain B, Crystal Structure Of Human Rab5b In Complex With Gdp
Length = 179
Score = 34.7 bits (78), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 11/39 (28%), Positives = 24/39 (61%)
Query: 96 RFLSLTTGLYRGTMGFLLIFDVTNENSFKDVEKWLLQIK 134
R+ SL YRG ++++D+TN+ +F + W+ +++
Sbjct: 69 RYHSLAPMYYRGAQAAIVVYDITNQETFARAKTWVKELQ 107
>pdb|1Z0D|A Chain A, Gdp-bound Rab5c Gtpase
pdb|1Z0D|C Chain C, Gdp-bound Rab5c Gtpase
Length = 167
Score = 34.7 bits (78), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 11/41 (26%), Positives = 25/41 (60%)
Query: 94 VSRFLSLTTGLYRGTMGFLLIFDVTNENSFKDVEKWLLQIK 134
+ R+ SL YRG ++++D+TN ++F + W+ +++
Sbjct: 64 LERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQ 104
>pdb|1Z07|A Chain A, Gppnhp-Bound Rab5c G55q Mutant Gtpase
Length = 166
Score = 34.3 bits (77), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 11/39 (28%), Positives = 24/39 (61%)
Query: 96 RFLSLTTGLYRGTMGFLLIFDVTNENSFKDVEKWLLQIK 134
R+ SL YRG ++++D+TN ++F + W+ +++
Sbjct: 66 RYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQ 104
>pdb|1HUQ|A Chain A, 1.8a Crystal Structure Of The Monomeric Gtpase Rab5c
(Mouse)
Length = 164
Score = 34.3 bits (77), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 11/40 (27%), Positives = 24/40 (60%)
Query: 95 SRFLSLTTGLYRGTMGFLLIFDVTNENSFKDVEKWLLQIK 134
R+ SL YRG ++++D+TN ++F + W+ +++
Sbjct: 63 ERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQ 102
>pdb|2HUP|A Chain A, Crystal Structure Of Human Rab43 In Complex With Gdp
pdb|2HUP|B Chain B, Crystal Structure Of Human Rab43 In Complex With Gdp
Length = 201
Score = 34.3 bits (77), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 24/44 (54%)
Query: 96 RFLSLTTGLYRGTMGFLLIFDVTNENSFKDVEKWLLQIKVMDGA 139
RF ++T YR G +L +D+T +SF V W+ ++ G+
Sbjct: 90 RFRTITQSYYRSANGAILAYDITKRSSFLSVPHWIEDVRKYAGS 133
>pdb|3CLV|A Chain A, Crystal Structure Of Rab5a From Plasmodium Falciparum,
Pfb0500c
Length = 208
Score = 33.9 bits (76), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 12/40 (30%), Positives = 24/40 (60%)
Query: 96 RFLSLTTGLYRGTMGFLLIFDVTNENSFKDVEKWLLQIKV 135
R+ S+ YRG +++FD++N N+ + W+ Q+K+
Sbjct: 105 RYASIVPLYYRGATCAIVVFDISNSNTLDRAKTWVNQLKI 144
>pdb|2HXS|A Chain A, Crystal Structure Of Rab28a Gtpase In The Inactive
(Gdp-3'p- Bound) Form
pdb|3E5H|A Chain A, Crystal Structure Of Rab28 Gtpase In The Active
(Gppnhp-Bound) Form
Length = 178
Score = 33.1 bits (74), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 19/28 (67%)
Query: 107 GTMGFLLIFDVTNENSFKDVEKWLLQIK 134
G G LL++D+TN SF+++E W +K
Sbjct: 79 GAQGVLLVYDITNYQSFENLEDWYTVVK 106
>pdb|1Z22|A Chain A, Gdp-Bound Rab23 Gtpase Crystallized In C222(1) Space Group
pdb|1Z2A|A Chain A, Gdp-Bound Rab23 Gtpase Crystallized In P2(1)2(1)2(1) Space
Group
Length = 168
Score = 32.3 bits (72), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 19/80 (23%), Positives = 35/80 (43%), Gaps = 7/80 (8%)
Query: 55 LLKHLKYLGTGTHGKTVGIVFPAISVTYSIGPRYFRFPL-----VSRFLSLTTGLYRGTM 109
+ ++ K + T + KT+G+ F + + R L F ++T YRG
Sbjct: 22 IQRYCKGIFTKDYKKTIGVDF--LERQIQVNDEDVRLMLWDTAGQEEFDAITKAYYRGAQ 79
Query: 110 GFLLIFDVTNENSFKDVEKW 129
+L+F T+ SF+ + W
Sbjct: 80 ACVLVFSTTDRESFEAISSW 99
>pdb|1WMS|A Chain A, High Resolution Crystal Structure Of Human Rab9 Gtpase: A
Novel Antiviral Drug Target
pdb|1WMS|B Chain B, High Resolution Crystal Structure Of Human Rab9 Gtpase: A
Novel Antiviral Drug Target
Length = 177
Score = 32.3 bits (72), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 20/35 (57%)
Query: 95 SRFLSLTTGLYRGTMGFLLIFDVTNENSFKDVEKW 129
RF SL T YRG+ LL F V + SF+++ W
Sbjct: 67 ERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNW 101
>pdb|1S8F|A Chain A, Crystal Structure Of Rab9 Complexed To Gdp Reveals A Dimer
With An Active Conformation Of Switch Ii
pdb|1S8F|B Chain B, Crystal Structure Of Rab9 Complexed To Gdp Reveals A Dimer
With An Active Conformation Of Switch Ii
Length = 177
Score = 32.3 bits (72), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 20/35 (57%)
Query: 95 SRFLSLTTGLYRGTMGFLLIFDVTNENSFKDVEKW 129
RF SL T YRG+ LL F V + SF+++ W
Sbjct: 69 ERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNW 103
>pdb|1YZL|A Chain A, Gppnhp-Bound Rab9 Gtpase
Length = 179
Score = 32.3 bits (72), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 20/34 (58%)
Query: 96 RFLSLTTGLYRGTMGFLLIFDVTNENSFKDVEKW 129
RF SL T YRG+ LL F V + SF+++ W
Sbjct: 72 RFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNW 105
>pdb|2Q3H|A Chain A, The Crystal Structure Of Rhoua In The Gdp-bound State
Length = 201
Score = 32.0 bits (71), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 35/82 (42%), Gaps = 6/82 (7%)
Query: 59 LKYLGTGTHGKTVGIVFPAISVTYSIGPRYFRFPLVS-----RFLSLTTGLYRGTMGFLL 113
+ Y G + + F S S+ R R L F L Y T FLL
Sbjct: 38 VSYTTNGYPTEYIPTAFDNFSAVVSVDGRPVRLQLCDTAGQDEFDKLRPLCYTNTDIFLL 97
Query: 114 IFDVTNENSFKDV-EKWLLQIK 134
F V + +SF++V EKW+ +I+
Sbjct: 98 CFSVVSPSSFQNVSEKWVPEIR 119
>pdb|1EK0|A Chain A, Gppnhp-Bound Ypt51 At 1.48 A Resolution
Length = 170
Score = 31.6 bits (70), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 13/39 (33%), Positives = 19/39 (48%)
Query: 95 SRFLSLTTGLYRGTMGFLLIFDVTNENSFKDVEKWLLQI 133
RF SL YR L+++DVT SF W+ ++
Sbjct: 63 ERFASLAPXYYRNAQAALVVYDVTKPQSFIKARHWVKEL 101
>pdb|2RGC|A Chain A, Crystal Structure Of H-Rasq61v-Gppnhp
Length = 166
Score = 31.2 bits (69), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 13/41 (31%), Positives = 22/41 (53%)
Query: 94 VSRFLSLTTGLYRGTMGFLLIFDVTNENSFKDVEKWLLQIK 134
V + ++ R GFL +F + N SF+D+ ++ QIK
Sbjct: 61 VEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIK 101
>pdb|2OCB|A Chain A, Crystal Structure Of Human Rab9b In Complex With A Gtp
Analogue
Length = 180
Score = 30.8 bits (68), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 19/35 (54%)
Query: 95 SRFLSLTTGLYRGTMGFLLIFDVTNENSFKDVEKW 129
RF SL T YRG LL F V + SF+++ W
Sbjct: 67 ERFKSLRTPFYRGADCCLLTFSVDDRQSFENLGNW 101
>pdb|2RGA|A Chain A, Crystal Structure Of H-Rasq61i-Gppnhp
pdb|2RGG|A Chain A, Crystal Structure Of H-Rasq61i-Gppnhp, Trigonal Crystal
Form
Length = 166
Score = 30.4 bits (67), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 12/41 (29%), Positives = 22/41 (53%)
Query: 94 VSRFLSLTTGLYRGTMGFLLIFDVTNENSFKDVEKWLLQIK 134
+ + ++ R GFL +F + N SF+D+ ++ QIK
Sbjct: 61 IEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIK 101
>pdb|2ERY|A Chain A, The Crystal Structure Of The Ras Related Protein Rras2
(Rras2) In The Gdp Bound State
pdb|2ERY|B Chain B, The Crystal Structure Of The Ras Related Protein Rras2
(Rras2) In The Gdp Bound State
Length = 172
Score = 30.4 bits (67), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 36/76 (47%), Gaps = 10/76 (13%)
Query: 76 PAISVTYS----IGPRYFRFPLVS-----RFLSLTTGLYRGTMGFLLIFDVTNENSFKDV 126
P I +Y+ I R R ++ F ++ R GFLL+F VT+ SF+++
Sbjct: 36 PTIEDSYTKQCVIDDRAARLDILDTAGQEEFGAMREQYMRTGEGFLLVFSVTDRGSFEEI 95
Query: 127 EKWLLQI-KVMDGALF 141
K+ QI +V D F
Sbjct: 96 YKFQRQILRVKDRDEF 111
>pdb|2FN4|A Chain A, The Crystal Structure Of Human Ras-Related Protein, Rras,
In The Gdp- Bound State
Length = 181
Score = 30.0 bits (66), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 36/83 (43%), Gaps = 7/83 (8%)
Query: 95 SRFLSLTTGLYRGTMGFLLIFDVTNENSFKDVEKWLLQI-KVMDGALFTHFELQIVFMRG 153
F ++ R GFLL+F + + SF +V K QI +V D F V + G
Sbjct: 68 EEFGAMREQYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFP------VVLVG 121
Query: 154 CLELLQRCREVVTPDQIMFGSTQ 176
L+ R+V + FG++
Sbjct: 122 NKADLESQRQVPRSEASAFGASH 144
>pdb|4Q21|A Chain A, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
Length = 189
Score = 30.0 bits (66), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 18/29 (62%)
Query: 106 RGTMGFLLIFDVTNENSFKDVEKWLLQIK 134
R GFL +F + N SF+D+ ++ QIK
Sbjct: 73 RTGEGFLCVFAINNTKSFEDIHQYREQIK 101
>pdb|2C5L|A Chain A, Structure Of Plc Epsilon Ras Association Domain With Hras
pdb|2C5L|B Chain B, Structure Of Plc Epsilon Ras Association Domain With Hras
Length = 173
Score = 29.6 bits (65), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 18/29 (62%)
Query: 106 RGTMGFLLIFDVTNENSFKDVEKWLLQIK 134
R GFL +F + N SF+D+ ++ QIK
Sbjct: 80 RTGEGFLCVFAINNTKSFEDIHQYREQIK 108
>pdb|4EFM|A Chain A, Crystal Structure Of H-Ras G12v In Complex With Gppnhp
(State 1)
Length = 171
Score = 29.6 bits (65), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 18/29 (62%)
Query: 106 RGTMGFLLIFDVTNENSFKDVEKWLLQIK 134
R GFL +F + N SF+D+ ++ QIK
Sbjct: 78 RTGEGFLCVFAINNTKSFEDIHQYREQIK 106
>pdb|4EFL|A Chain A, Crystal Structure Of H-Ras Wt In Complex With Gppnhp
(State 1)
Length = 171
Score = 29.6 bits (65), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 18/29 (62%)
Query: 106 RGTMGFLLIFDVTNENSFKDVEKWLLQIK 134
R GFL +F + N SF+D+ ++ QIK
Sbjct: 78 RTGEGFLCVFAINNTKSFEDIHQYREQIK 106
>pdb|621P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
Length = 166
Score = 29.6 bits (65), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 18/29 (62%)
Query: 106 RGTMGFLLIFDVTNENSFKDVEKWLLQIK 134
R GFL +F + N SF+D+ ++ QIK
Sbjct: 73 RTGEGFLCVFAINNTKSFEDIHQYREQIK 101
>pdb|1CLU|A Chain A, H-Ras Complexed With Diaminobenzophenone-Beta,Gamma-Imido-
Gtp
pdb|1JAI|A Chain A, H-Ras P21 Protein Mutant G12p, Complexed With
Guanosine-5'- [beta,Gamma-Methylene] Triphosphate And
Manganese
pdb|1PLJ|A Chain A, Crystallographic Studies On P21h-Ras Using Synchrotron
Laue Method: Improvement Of Crystal Quality And
Monitoring Of The Gtpase Reaction At Different Time
Points
pdb|1PLL|A Chain A, Crystallographic Studies On P21h-Ras Using Synchrotron
Laue Method: Improvement Of Crystal Quality And
Monitoring Of The Gtpase Reaction At Different Time
Points
pdb|821P|A Chain A, Three-Dimensional Structures And Properties Of A
Transforming And A Nontransforming Glycine-12 Mutant Of
P21h-Ras
Length = 166
Score = 29.6 bits (65), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 18/29 (62%)
Query: 106 RGTMGFLLIFDVTNENSFKDVEKWLLQIK 134
R GFL +F + N SF+D+ ++ QIK
Sbjct: 73 RTGEGFLCVFAINNTKSFEDIHQYREQIK 101
>pdb|1JAH|A Chain A, H-Ras P21 Protein Mutant G12p, Complexed With
Guanosine-5'- [beta,Gamma-Methylene] Triphosphate And
Magnesium
pdb|1PLK|A Chain A, Crystallographic Studies On P21h-Ras Using Synchrotron
Laue Method: Improvement Of Crystal Quality And
Monitoring Of The Gtpase Reaction At Different Time
Points
Length = 166
Score = 29.6 bits (65), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 18/29 (62%)
Query: 106 RGTMGFLLIFDVTNENSFKDVEKWLLQIK 134
R GFL +F + N SF+D+ ++ QIK
Sbjct: 73 RTGEGFLCVFAINNTKSFEDIHQYREQIK 101
>pdb|221P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
Length = 166
Score = 29.6 bits (65), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 18/29 (62%)
Query: 106 RGTMGFLLIFDVTNENSFKDVEKWLLQIK 134
R GFL +F + N SF+D+ ++ QIK
Sbjct: 73 RTGEGFLCVFAINNTKSFEDIHQYREQIK 101
>pdb|4EFN|A Chain A, Crystal Structure Of H-Ras Q61l In Complex With Gppnhp
(State 1)
Length = 171
Score = 29.6 bits (65), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 18/29 (62%)
Query: 106 RGTMGFLLIFDVTNENSFKDVEKWLLQIK 134
R GFL +F + N SF+D+ ++ QIK
Sbjct: 78 RTGEGFLCVFAINNTKSFEDIHQYREQIK 106
>pdb|3KKM|A Chain A, Crystal Structure Of H-Ras T35s In Complex With Gppnhp
pdb|3KKN|A Chain A, Crystal Structure Of H-Ras T35s In Complex With Gppnhp
pdb|2LCF|A Chain A, Solution Structure Of Gppnhp-Bound H-Rast35s Mutant
Protein
Length = 172
Score = 29.6 bits (65), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 18/29 (62%)
Query: 106 RGTMGFLLIFDVTNENSFKDVEKWLLQIK 134
R GFL +F + N SF+D+ ++ QIK
Sbjct: 79 RTGEGFLCVFAINNTKSFEDIHQYREQIK 107
>pdb|2QUZ|A Chain A, Crystal Structure Of The Activating H-Rask117r Mutant In
Costello Syndrome, Bound To Mg-Gdp
Length = 166
Score = 29.6 bits (65), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 18/29 (62%)
Query: 106 RGTMGFLLIFDVTNENSFKDVEKWLLQIK 134
R GFL +F + N SF+D+ ++ QIK
Sbjct: 73 RTGEGFLCVFAINNTKSFEDIHQYREQIK 101
>pdb|421P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
Length = 166
Score = 29.6 bits (65), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 18/29 (62%)
Query: 106 RGTMGFLLIFDVTNENSFKDVEKWLLQIK 134
R GFL +F + N SF+D+ ++ QIK
Sbjct: 73 RTGEGFLCVFAINNTKSFEDIHQYREQIK 101
>pdb|1ZVQ|A Chain A, Structure Of The Q61g Mutant Of Ras In The Gdp-Bound Form
Length = 166
Score = 29.6 bits (65), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 18/29 (62%)
Query: 106 RGTMGFLLIFDVTNENSFKDVEKWLLQIK 134
R GFL +F + N SF+D+ ++ QIK
Sbjct: 73 RTGEGFLCVFAINNTKSFEDIHQYREQIK 101
>pdb|1AGP|A Chain A, Three-Dimensional Structures And Properties Of A
Transforming And A Nontransforming Gly-12 Mutant Of
P21-H-Ras
Length = 166
Score = 29.6 bits (65), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 18/29 (62%)
Query: 106 RGTMGFLLIFDVTNENSFKDVEKWLLQIK 134
R GFL +F + N SF+D+ ++ QIK
Sbjct: 73 RTGEGFLCVFAINNTKSFEDIHQYREQIK 101
>pdb|2X1V|A Chain A, Crystal Structure Of The Activating H-Ras I163f Mutant In
Costello Syndrome, Bound To Mg-Gdp
Length = 166
Score = 29.6 bits (65), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 18/29 (62%)
Query: 106 RGTMGFLLIFDVTNENSFKDVEKWLLQIK 134
R GFL +F + N SF+D+ ++ QIK
Sbjct: 73 RTGEGFLCVFAINNTKSFEDIHQYREQIK 101
>pdb|3DDC|A Chain A, Crystal Structure Of Nore1a In Complex With Ras
Length = 166
Score = 29.6 bits (65), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 18/29 (62%)
Query: 106 RGTMGFLLIFDVTNENSFKDVEKWLLQIK 134
R GFL +F + N SF+D+ ++ QIK
Sbjct: 73 RTGEGFLCVFAINNTKSFEDIHQYREQIK 101
>pdb|1IAQ|A Chain A, C-H-Ras P21 Protein Mutant With Thr 35 Replaced By Ser
(T35s) Complexed With Guanosine-5'-[b,G-Imido]
Triphosphate
pdb|1IAQ|B Chain B, C-H-Ras P21 Protein Mutant With Thr 35 Replaced By Ser
(T35s) Complexed With Guanosine-5'-[b,G-Imido]
Triphosphate
pdb|1IAQ|C Chain C, C-H-Ras P21 Protein Mutant With Thr 35 Replaced By Ser
(T35s) Complexed With Guanosine-5'-[b,G-Imido]
Triphosphate
Length = 166
Score = 29.6 bits (65), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 18/29 (62%)
Query: 106 RGTMGFLLIFDVTNENSFKDVEKWLLQIK 134
R GFL +F + N SF+D+ ++ QIK
Sbjct: 73 RTGEGFLCVFAINNTKSFEDIHQYREQIK 101
>pdb|1NVV|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-specific Nucleotide Exchange Factor Sos
pdb|1XD2|A Chain A, Crystal Structure Of A Ternary Ras:sos:ras*gdp Complex
Length = 166
Score = 29.6 bits (65), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 18/29 (62%)
Query: 106 RGTMGFLLIFDVTNENSFKDVEKWLLQIK 134
R GFL +F + N SF+D+ ++ QIK
Sbjct: 73 RTGEGFLCVFAINNTKSFEDIHQYREQIK 101
>pdb|1WQ1|R Chain R, Ras-Rasgap Complex
pdb|1BKD|R Chain R, Complex Of Human H-Ras With Human Sos-1
pdb|1CTQ|A Chain A, Structure Of P21ras In Complex With Gppnhp At 100 K
pdb|1QRA|A Chain A, Structure Of P21ras In Complex With Gtp At 100 K
pdb|1K8R|A Chain A, Crystal Structure Of Ras-Bry2rbd Complex
pdb|1NVV|R Chain R, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-specific Nucleotide Exchange Factor Sos
pdb|1NVW|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-specific Nucleotide Exchange Factor Sos
pdb|1NVW|R Chain R, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-specific Nucleotide Exchange Factor Sos
pdb|1P2S|A Chain A, H-Ras 166 In 50% 2,2,2 Triflouroethanol
pdb|1P2T|A Chain A, H-Ras 166 In Aqueous Mother Liqour, Rt
pdb|1P2U|A Chain A, H-Ras In 50% Isopropanol
pdb|1P2V|A Chain A, H-Ras 166 In 60 % 1,6 Hexanediol
pdb|1XD2|B Chain B, Crystal Structure Of A Ternary Ras:sos:ras*gdp Complex
pdb|121P|A Chain A, Struktur Und Guanosintriphosphat-Hydrolysemechanismus Des
C- Terminal Verkuerzten Menschlichen Krebsproteins
P21-H-Ras
pdb|1CRP|A Chain A, The Solution Structure And Dynamics Of Ras P21. Gdp
Determined By Heteronuclear Three And Four Dimensional
Nmr Spectroscopy
pdb|1CRQ|A Chain A, The Solution Structure And Dynamics Of Ras P21. Gdp
Determined By Heteronuclear Three And Four Dimensional
Nmr Spectroscopy
pdb|1CRR|A Chain A, The Solution Structure And Dynamics Of Ras P21. Gdp
Determined By Heteronuclear Three And Four Dimensional
Nmr Spectroscopy
pdb|1GNP|A Chain A, X-Ray Crystal Structure Analysis Of The Catalytic Domain
Of The Oncogene Product P21h-Ras Complexed With Caged
Gtp And Mant Dgppnhp
pdb|1GNQ|A Chain A, X-Ray Crystal Structure Analysis Of The Catalytic Domain
Of The Oncogene Product P21h-Ras Complexed With Caged
Gtp And Mant Dgppnhp
pdb|1GNR|A Chain A, X-Ray Crystal Structure Analysis Of The Catalytic Domain
Of The Oncogene Product P21h-Ras Complexed With Caged
Gtp And Mant Dgppnhp
pdb|5P21|A Chain A, Refined Crystal Structure Of The Triphosphate Conformation
Of H-Ras P21 At 1.35 Angstroms Resolution: Implications
For The Mechanism Of Gtp Hydrolysis
pdb|2RGE|A Chain A, Crystal Structure Of H-Ras-Gppnhp
pdb|3K8Y|A Chain A, Allosteric Modulation Of H-Ras Gtpase
pdb|3LBH|A Chain A, Ras Soaked In Calcium Acetate
pdb|3LBI|A Chain A, Ras Soaked In Magnesium Acetate And Back Soaked In Calcium
A
pdb|3LBN|A Chain A, Ras Soaked In Magnesium Acetate
pdb|3KUD|A Chain A, Complex Of Ras-Gdp With Rafrbd(A85k)
pdb|3L8Y|A Chain A, Complex Of Ras With Cyclen
pdb|3L8Z|A Chain A, H-Ras Wildtype New Crystal Form
pdb|3RRY|A Chain A, H-Ras Crosslinked Control, Soaked In Aqueous Solution: One
Of 10 In Mscs Set
pdb|3RRZ|A Chain A, H-Ras In 70% Glycerol: One Of 10 In Mscs Set
pdb|3RS0|A Chain A, H-Ras Soaked In Neat Cyclopentanol: One Of 10 In Mscs Set
pdb|3RS2|A Chain A, H-Ras Soaked In 50% 2,2,2-Trifluoroethanol: One Of 10 In
Mscs Set
pdb|3RS3|A Chain A, H-Ras Soaked In Neat Hexane: 1 Of 10 In Mscs Set
pdb|3RS4|A Chain A, H-Ras Soaked In 60% 1,6-Hexanediol: 1 Of 10 In Mscs Set
pdb|3RS5|A Chain A, H-Ras Soaked In 55% Dimethylformamide: 1 Of 10 In Mscs Set
pdb|3RS7|A Chain A, H-Ras Soaked In 50% Isopropanol: 1 Of 10 In Mscs Set
pdb|3RSL|A Chain A, H-Ras Soaked In 90% R,S,R-Bisfuranol: One Of 10 In Mscs
Set
pdb|3RSO|A Chain A, H-Ras Soaked In 20% S,R,S-Bisfuranol: 1 Of 10 In Mscs Set
pdb|3TGP|A Chain A, Room Temperature H-Ras
pdb|4DLS|A Chain A, H-Ras Set 1 Cacl2 'mixed'
pdb|4DLT|A Chain A, H-Ras Set 2 Ca(Oac)2, On
pdb|4DLU|A Chain A, H-Ras Set 1 Ca(Oac)2, On
pdb|4DLW|A Chain A, H-Ras Set 2 Ca(Oac)2DTT, ON
Length = 166
Score = 29.6 bits (65), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 18/29 (62%)
Query: 106 RGTMGFLLIFDVTNENSFKDVEKWLLQIK 134
R GFL +F + N SF+D+ ++ QIK
Sbjct: 73 RTGEGFLCVFAINNTKSFEDIHQYREQIK 101
>pdb|521P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
Length = 166
Score = 29.6 bits (65), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 18/29 (62%)
Query: 106 RGTMGFLLIFDVTNENSFKDVEKWLLQIK 134
R GFL +F + N SF+D+ ++ QIK
Sbjct: 73 RTGEGFLCVFAINNTKSFEDIHQYREQIK 101
>pdb|1RVD|A Chain A, H-Ras Complexed With Diaminobenzophenone-Beta,Gamma-Imido-
Gtp
pdb|1HE8|B Chain B, Ras G12v-Pi 3-Kinase Gamma Complex
pdb|2UZI|R Chain R, Crystal Structure Of Hras(G12v) - Anti-Ras Fv Complex
pdb|2VH5|R Chain R, Crystal Structure Of Hras(G12v) - Anti-Ras Fv (Disulfide
Free Mutant) Complex
pdb|3OIV|A Chain A, H-Rasg12v With Allosteric Switch In The "off" State
pdb|3OIW|A Chain A, H-Rasg12v With Allosteric Switch In The "on" State
Length = 166
Score = 29.6 bits (65), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 18/29 (62%)
Query: 106 RGTMGFLLIFDVTNENSFKDVEKWLLQIK 134
R GFL +F + N SF+D+ ++ QIK
Sbjct: 73 RTGEGFLCVFAINNTKSFEDIHQYREQIK 101
>pdb|1LF0|A Chain A, Crystal Structure Of Rasa59g In The Gtp-Bound Form
pdb|1LF5|A Chain A, Crystal Structure Of Rasa59g In The Gdp-Bound Form
pdb|1NVU|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-Specific Nucleotide Exchange Factor Sos
pdb|1NVU|R Chain R, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-Specific Nucleotide Exchange Factor Sos
pdb|1NVX|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-Specific Nucleotide Exchange Factor Sos
pdb|1NVX|R Chain R, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-Specific Nucleotide Exchange Factor Sos
Length = 166
Score = 29.6 bits (65), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 18/29 (62%)
Query: 106 RGTMGFLLIFDVTNENSFKDVEKWLLQIK 134
R GFL +F + N SF+D+ ++ QIK
Sbjct: 73 RTGEGFLCVFAINNTKSFEDIHQYREQIK 101
>pdb|3K9N|A Chain A, Allosteric Modulation Of H-Ras Gtpase
pdb|3K9L|A Chain A, Allosteric Modulation Of H-Ras Gtpase
pdb|3K9L|B Chain B, Allosteric Modulation Of H-Ras Gtpase
pdb|3K9L|C Chain C, Allosteric Modulation Of H-Ras Gtpase
Length = 166
Score = 29.6 bits (65), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 18/29 (62%)
Query: 106 RGTMGFLLIFDVTNENSFKDVEKWLLQIK 134
R GFL +F + N SF+D+ ++ QIK
Sbjct: 73 RTGEGFLCVFAINNTKSFEDIHQYREQIK 101
>pdb|2RGB|A Chain A, Crystal Structure Of H-Rasq61k-Gppnhp
Length = 166
Score = 29.6 bits (65), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 18/29 (62%)
Query: 106 RGTMGFLLIFDVTNENSFKDVEKWLLQIK 134
R GFL +F + N SF+D+ ++ QIK
Sbjct: 73 RTGEGFLCVFAINNTKSFEDIHQYREQIK 101
>pdb|2CL0|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gppnhp
pdb|2CL6|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With S-Caged Gtp
pdb|2CL7|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gtp
pdb|2CLC|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gtp (2)
pdb|2EVW|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With R-Caged Gtp
pdb|2CE2|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gdp
Length = 166
Score = 29.6 bits (65), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 18/29 (62%)
Query: 106 RGTMGFLLIFDVTNENSFKDVEKWLLQIK 134
R GFL +F + N SF+D+ ++ QIK
Sbjct: 73 RTGEGFLCVFAINNTKSFEDIHQYREQIK 101
>pdb|3V4F|A Chain A, H-Ras Peg 400CACL2, ORDERED OFF
pdb|4DLR|A Chain A, H-Ras Peg 400CA(OAC)2, ORDERED OFF
pdb|4DLV|A Chain A, H-Ras Set 2 Cacl2DTT, ORDERED OFF
pdb|4DLX|A Chain A, H-Ras Set 1 Cacl2DTE, ORDERED OFF
pdb|4DLY|A Chain A, Set 1 Cacl2DTT, ORDERED OFF
pdb|4DLZ|A Chain A, H-Ras Set 2 Ca(Oac)2DTE, ORDERED OFF
Length = 166
Score = 29.6 bits (65), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 18/29 (62%)
Query: 106 RGTMGFLLIFDVTNENSFKDVEKWLLQIK 134
R GFL +F + N SF+D+ ++ QIK
Sbjct: 73 RTGEGFLCVFAINNTKSFEDIHQYREQIK 101
>pdb|3I3S|R Chain R, Crystal Structure Of H-Ras With Thr50 Replaced By
Isoleucine
Length = 166
Score = 29.6 bits (65), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 18/29 (62%)
Query: 106 RGTMGFLLIFDVTNENSFKDVEKWLLQIK 134
R GFL +F + N SF+D+ ++ QIK
Sbjct: 73 RTGEGFLCVFAINNTKSFEDIHQYREQIK 101
>pdb|1LFD|B Chain B, Crystal Structure Of The Active Ras Protein Complexed With
The Ras-interacting Domain Of Ralgds
pdb|1LFD|D Chain D, Crystal Structure Of The Active Ras Protein Complexed With
The Ras-interacting Domain Of Ralgds
Length = 167
Score = 29.6 bits (65), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 18/29 (62%)
Query: 106 RGTMGFLLIFDVTNENSFKDVEKWLLQIK 134
R GFL +F + N SF+D+ ++ QIK
Sbjct: 73 RTGEGFLCVFAINNTKSFEDIHQYREQIK 101
>pdb|721P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
pdb|2RGD|A Chain A, Crystal Structure Of H-Rasq61l-Gppnhp
pdb|3OIU|A Chain A, H-Rasq61l With Allosteric Switch In The "on" State
Length = 166
Score = 29.6 bits (65), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 18/29 (62%)
Query: 106 RGTMGFLLIFDVTNENSFKDVEKWLLQIK 134
R GFL +F + N SF+D+ ++ QIK
Sbjct: 73 RTGEGFLCVFAINNTKSFEDIHQYREQIK 101
>pdb|6Q21|A Chain A, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
pdb|6Q21|B Chain B, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
pdb|6Q21|C Chain C, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
pdb|6Q21|D Chain D, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
pdb|1IOZ|A Chain A, Crystal Structure Of The C-Ha-Ras Protein Prepared By The
Cell-Free Synthesis
pdb|1AA9|A Chain A, Human C-Ha-Ras(1-171)(Dot)gdp, Nmr, Minimized Average
Structure
pdb|1Q21|A Chain A, Crystal Structures At 2.2 Angstroms Resolution Of The
Catalytic Domains Of Normal Ras Protein And An Oncogenic
Mutant Complexed With Gsp
Length = 171
Score = 29.6 bits (65), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 18/29 (62%)
Query: 106 RGTMGFLLIFDVTNENSFKDVEKWLLQIK 134
R GFL +F + N SF+D+ ++ QIK
Sbjct: 73 RTGEGFLCVFAINNTKSFEDIHQYREQIK 101
>pdb|2Q21|A Chain A, Crystal Structures At 2.2 Angstroms Resolution Of The
Catalytic Domains Of Normal Ras Protein And An Oncogenic
Mutant Complexed With Gsp
Length = 171
Score = 29.6 bits (65), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 18/29 (62%)
Query: 106 RGTMGFLLIFDVTNENSFKDVEKWLLQIK 134
R GFL +F + N SF+D+ ++ QIK
Sbjct: 73 RTGEGFLCVFAINNTKSFEDIHQYREQIK 101
>pdb|3LO5|A Chain A, Crystal Structure Of The Dominant Negative S17n Mutant Of
Ras
pdb|3LO5|C Chain C, Crystal Structure Of The Dominant Negative S17n Mutant Of
Ras
pdb|3LO5|E Chain E, Crystal Structure Of The Dominant Negative S17n Mutant Of
Ras
Length = 166
Score = 29.6 bits (65), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 18/29 (62%)
Query: 106 RGTMGFLLIFDVTNENSFKDVEKWLLQIK 134
R GFL +F + N SF+D+ ++ QIK
Sbjct: 73 RTGEGFLCVFAINNTKSFEDIHQYREQIK 101
>pdb|2CLD|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gdp (2)
Length = 166
Score = 29.6 bits (65), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 18/29 (62%)
Query: 106 RGTMGFLLIFDVTNENSFKDVEKWLLQIK 134
R GFL +F + N SF+D+ ++ QIK
Sbjct: 73 RTGEGFLCVFAINNTKSFEDIHQYREQIK 101
>pdb|1ZW6|A Chain A, Crystal Structure Of The Gtp-Bound Form Of Rasq61g
Length = 166
Score = 29.6 bits (65), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 18/29 (62%)
Query: 106 RGTMGFLLIFDVTNENSFKDVEKWLLQIK 134
R GFL +F + N SF+D+ ++ QIK
Sbjct: 73 RTGEGFLCVFAINNTKSFEDIHQYREQIK 101
>pdb|1XJ0|A Chain A, Crystal Structure Of The Gdp-Bound Form Of The Rasg60a
Mutant
Length = 166
Score = 29.6 bits (65), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 18/29 (62%)
Query: 106 RGTMGFLLIFDVTNENSFKDVEKWLLQIK 134
R GFL +F + N SF+D+ ++ QIK
Sbjct: 73 RTGEGFLCVFAINNTKSFEDIHQYREQIK 101
>pdb|1XCM|A Chain A, Crystal Structure Of The Gppnhp-Bound H-Ras G60a Mutant
Length = 167
Score = 29.6 bits (65), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 18/29 (62%)
Query: 106 RGTMGFLLIFDVTNENSFKDVEKWLLQIK 134
R GFL +F + N SF+D+ ++ QIK
Sbjct: 73 RTGEGFLCVFAINNTKSFEDIHQYREQIK 101
>pdb|1QS8|A Chain A, Crystal Structure Of The P. Vivax Aspartic Proteinase
Plasmepsin Complexed With The Inhibitor Pepstatin A
pdb|1QS8|B Chain B, Crystal Structure Of The P. Vivax Aspartic Proteinase
Plasmepsin Complexed With The Inhibitor Pepstatin A
Length = 329
Score = 28.9 bits (63), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 35/81 (43%), Gaps = 8/81 (9%)
Query: 21 FGKPTYRCTKV------TKMTAAKEFSFNFGTQLGRRGIPLLKHLKYLGTGTHGKTVGIV 74
FGK T V T +TA EF F L +P L Y+ T + + +
Sbjct: 203 FGKQTMEKANVIVDSGTTTITAPSEFLNKFFANLNVIKVPFLPF--YVTTCDNKEMPTLE 260
Query: 75 FPAISVTYSIGPRYFRFPLVS 95
F + + TY++ P Y+ P++
Sbjct: 261 FKSANNTYTLEPEYYMNPILE 281
>pdb|4DSO|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras
And Inhibit Sos-Mediated Nucleotide Exchange Activity
pdb|4DST|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras
And Inhibit Sos-Mediated Nucleotide Exchange Activity
pdb|4DSU|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras
And Inhibit Sos-Mediated Nucleotide Exchange Activity
pdb|4DSN|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras
And Inhibit Sos-Mediated Nucleotide Exchange Activity
Length = 189
Score = 28.9 bits (63), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 17/29 (58%)
Query: 106 RGTMGFLLIFDVTNENSFKDVEKWLLQIK 134
R GFL +F + N SF+D+ + QIK
Sbjct: 74 RTGEGFLCVFAINNTKSFEDIHHYREQIK 102
>pdb|3GFT|A Chain A, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|B Chain B, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|C Chain C, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|D Chain D, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|E Chain E, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|F Chain F, Human K-Ras In Complex With A Gtp Analogue
Length = 187
Score = 28.9 bits (63), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 17/29 (58%)
Query: 106 RGTMGFLLIFDVTNENSFKDVEKWLLQIK 134
R GFL +F + N SF+D+ + QIK
Sbjct: 91 RTGEGFLCVFAINNTKSFEDIHHYREQIK 119
>pdb|1MIQ|A Chain A, Crystal Structure Of Proplasmepsin From The Human Malarial
Pathogen Plasmodium Vivax
pdb|1MIQ|B Chain B, Crystal Structure Of Proplasmepsin From The Human Malarial
Pathogen Plasmodium Vivax
Length = 375
Score = 28.9 bits (63), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 35/81 (43%), Gaps = 8/81 (9%)
Query: 21 FGKPTYRCTKV------TKMTAAKEFSFNFGTQLGRRGIPLLKHLKYLGTGTHGKTVGIV 74
FGK T V T +TA EF F L +P L Y+ T + + +
Sbjct: 249 FGKQTMEKANVIVDSGTTTITAPSEFLNKFFANLNVIKVPFLPF--YVTTCDNKEMPTLE 306
Query: 75 FPAISVTYSIGPRYFRFPLVS 95
F + + TY++ P Y+ P++
Sbjct: 307 FKSANNTYTLEPEYYMNPILE 327
>pdb|4EPX|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
pdb|4EPY|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
Length = 170
Score = 28.5 bits (62), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 17/29 (58%)
Query: 106 RGTMGFLLIFDVTNENSFKDVEKWLLQIK 134
R GFL +F + N SF+D+ + QIK
Sbjct: 74 RTGEGFLCVFAINNTKSFEDIHHYREQIK 102
>pdb|4EPT|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
pdb|4EPV|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
pdb|4EPW|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
Length = 170
Score = 28.5 bits (62), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 17/29 (58%)
Query: 106 RGTMGFLLIFDVTNENSFKDVEKWLLQIK 134
R GFL +F + N SF+D+ + QIK
Sbjct: 74 RTGEGFLCVFAINNTKSFEDIHHYREQIK 102
>pdb|4EPR|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
Length = 170
Score = 28.5 bits (62), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 17/29 (58%)
Query: 106 RGTMGFLLIFDVTNENSFKDVEKWLLQIK 134
R GFL +F + N SF+D+ + QIK
Sbjct: 74 RTGEGFLCVFAINNTKSFEDIHHYREQIK 102
>pdb|3SR3|A Chain A, Crystal Structure Of The W180a Mutant Of Microcin
Immunity Protein Mccf From Bacillus Anthracis Shows The
Active Site Loop In The Open Conformation.
pdb|3SR3|B Chain B, Crystal Structure Of The W180a Mutant Of Microcin
Immunity Protein Mccf From Bacillus Anthracis Shows The
Active Site Loop In The Open Conformation
Length = 336
Score = 28.1 bits (61), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 6/40 (15%)
Query: 51 RGIPLLKHLKYLGTGTHGKTVGIVFPAISVTYSIGPRYFR 90
+PL K LKY G T+GI P+ VTY+ R+ R
Sbjct: 2 NAMPLPKSLKY------GDTIGIYSPSSPVTYTSPKRFER 35
>pdb|3TYX|A Chain A, Crystal Structure Of The F177s Mutant Of Mycrocine
Immunity Protein (Mccf) With Amp
pdb|3TYX|B Chain B, Crystal Structure Of The F177s Mutant Of Mycrocine
Immunity Protein (Mccf) With Amp
Length = 336
Score = 28.1 bits (61), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 6/40 (15%)
Query: 51 RGIPLLKHLKYLGTGTHGKTVGIVFPAISVTYSIGPRYFR 90
+PL K LKY G T+GI P+ VTY+ R+ R
Sbjct: 2 NAMPLPKSLKY------GDTIGIYSPSSPVTYTSPKRFER 35
>pdb|3U1B|A Chain A, Crystal Structure Of The S238r Mutant Of Mycrocine
Immunity Protein (Mccf) With Amp
pdb|3U1B|B Chain B, Crystal Structure Of The S238r Mutant Of Mycrocine
Immunity Protein (Mccf) With Amp
Length = 336
Score = 28.1 bits (61), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 6/40 (15%)
Query: 51 RGIPLLKHLKYLGTGTHGKTVGIVFPAISVTYSIGPRYFR 90
+PL K LKY G T+GI P+ VTY+ R+ R
Sbjct: 2 NAMPLPKSLKY------GDTIGIYSPSSPVTYTSPKRFER 35
>pdb|3T5M|A Chain A, Crystal Structure Of The S112a Mutant Of Mycrocine
Immunity Protein (Mccf) With Amp
pdb|3T5M|B Chain B, Crystal Structure Of The S112a Mutant Of Mycrocine
Immunity Protein (Mccf) With Amp
Length = 336
Score = 28.1 bits (61), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 6/40 (15%)
Query: 51 RGIPLLKHLKYLGTGTHGKTVGIVFPAISVTYSIGPRYFR 90
+PL K LKY G T+GI P+ VTY+ R+ R
Sbjct: 2 NAMPLPKSLKY------GDTIGIYSPSSPVTYTSPKRFER 35
>pdb|3RAP|R Chain R, The Small G Protein Rap2 In A Non Catalytic Complex With
Gtp
pdb|3RAP|S Chain S, The Small G Protein Rap2 In A Non Catalytic Complex With
Gtp
pdb|1KAO|A Chain A, Crystal Structure Of The Small G Protein Rap2a With Gdp
pdb|2RAP|A Chain A, The Small G Protein Rap2a In Complex With Gtp
Length = 167
Score = 27.7 bits (60), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 11/39 (28%), Positives = 22/39 (56%)
Query: 95 SRFLSLTTGLYRGTMGFLLIFDVTNENSFKDVEKWLLQI 133
+F S+ + GF+L++ + N+ SF+D++ QI
Sbjct: 62 EQFASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQI 100
>pdb|3CON|A Chain A, Crystal Structure Of The Human Nras Gtpase Bound With Gdp
Length = 190
Score = 27.3 bits (59), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 16/29 (55%)
Query: 106 RGTMGFLLIFDVTNENSFKDVEKWLLQIK 134
R GFL +F + N SF D+ + QIK
Sbjct: 91 RTGEGFLCVFAINNSKSFADINLYREQIK 119
>pdb|3GJZ|A Chain A, Crystal Structure Of Microcin Immunity Protein Mccf From
Bacillus Anthracis Str. Ames
pdb|3GJZ|B Chain B, Crystal Structure Of Microcin Immunity Protein Mccf From
Bacillus Anthracis Str. Ames
Length = 336
Score = 27.3 bits (59), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 20/37 (54%), Gaps = 6/37 (16%)
Query: 54 PLLKHLKYLGTGTHGKTVGIVFPAISVTYSIGPRYFR 90
PL K LKY G T+GI P+ VTY+ R+ R
Sbjct: 5 PLPKSLKY------GDTIGIYSPSSPVTYTSPKRFER 35
>pdb|2WBL|C Chain C, Three-Dimensional Structure Of A Binary Rop-Prone Complex
pdb|2WBL|D Chain D, Three-Dimensional Structure Of A Binary Rop-Prone Complex
Length = 180
Score = 26.9 bits (58), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 22/31 (70%), Gaps = 1/31 (3%)
Query: 105 YRGTMGFLLIFDVTNENSFKDV-EKWLLQIK 134
YRG FLL F + ++ S++++ +KWL ++K
Sbjct: 75 YRGADVFLLAFSLISKASYENIHKKWLPELK 105
>pdb|3M1I|A Chain A, Crystal Structure Of Yeast Crm1 (Xpo1p) In Complex With
Yeas (Yrb1p) And Yeast Rangtp (Gsp1pgtp)
Length = 219
Score = 26.9 bits (58), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 11/36 (30%), Positives = 20/36 (55%)
Query: 94 VSRFLSLTTGLYRGTMGFLLIFDVTNENSFKDVEKW 129
+ +F L G Y +++FDVT+ ++K+V W
Sbjct: 71 LEKFGGLRDGYYINAQCAIIMFDVTSRITYKNVPNW 106
>pdb|3RAN|A Chain A, Canine Gdp-Ran Q69l Mutant
pdb|3RAN|C Chain C, Canine Gdp-Ran Q69l Mutant
pdb|3RAN|D Chain D, Canine Gdp-Ran Q69l Mutant
pdb|3RAN|B Chain B, Canine Gdp-Ran Q69l Mutant
pdb|3GJX|C Chain C, Crystal Structure Of The Nuclear Export Complex Crm1-
Snurportin1-Rangtp
pdb|3GJX|F Chain F, Crystal Structure Of The Nuclear Export Complex Crm1-
Snurportin1-Rangtp
Length = 216
Score = 26.6 bits (57), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 11/36 (30%), Positives = 20/36 (55%)
Query: 94 VSRFLSLTTGLYRGTMGFLLIFDVTNENSFKDVEKW 129
+ +F L G Y +++FDVT+ ++K+V W
Sbjct: 69 LEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNW 104
>pdb|3ICQ|B Chain B, Karyopherin Nuclear State
pdb|3ICQ|C Chain C, Karyopherin Nuclear State
Length = 171
Score = 26.6 bits (57), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 11/36 (30%), Positives = 20/36 (55%)
Query: 94 VSRFLSLTTGLYRGTMGFLLIFDVTNENSFKDVEKW 129
+ +F L G Y +++FDVT+ ++K+V W
Sbjct: 63 LEKFGGLRDGYYINAQCAIIMFDVTSRITYKNVPNW 98
>pdb|2X19|A Chain A, Crystal Structure Of Importin13 - Rangtp Complex
Length = 172
Score = 26.6 bits (57), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 11/36 (30%), Positives = 20/36 (55%)
Query: 94 VSRFLSLTTGLYRGTMGFLLIFDVTNENSFKDVEKW 129
+ +F L G Y +++FDVT+ ++K+V W
Sbjct: 64 LEKFGGLRDGYYINAQCAIIMFDVTSRITYKNVPNW 99
>pdb|3NC1|C Chain C, Crystal Structure Of The Crm1-Rangtp Complex
Length = 182
Score = 26.6 bits (57), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 11/36 (30%), Positives = 20/36 (55%)
Query: 94 VSRFLSLTTGLYRGTMGFLLIFDVTNENSFKDVEKW 129
+ +F L G Y +++FDVT+ ++K+V W
Sbjct: 71 LEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNW 106
>pdb|3NBY|C Chain C, Crystal Structure Of The Pki Nes-Crm1-Rangtp Nuclear
Export Complex
pdb|3NBY|F Chain F, Crystal Structure Of The Pki Nes-Crm1-Rangtp Nuclear
Export Complex
pdb|3NBZ|C Chain C, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal I)
pdb|3NBZ|F Chain F, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal I)
pdb|3NC0|C Chain C, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal Ii)
pdb|3NC0|F Chain F, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal Ii)
Length = 176
Score = 26.2 bits (56), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 11/36 (30%), Positives = 20/36 (55%)
Query: 94 VSRFLSLTTGLYRGTMGFLLIFDVTNENSFKDVEKW 129
+ +F L G Y +++FDVT+ ++K+V W
Sbjct: 65 LEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNW 100
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.329 0.142 0.438
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,134,702
Number of Sequences: 62578
Number of extensions: 196064
Number of successful extensions: 632
Number of sequences better than 100.0: 166
Number of HSP's better than 100.0 without gapping: 155
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 477
Number of HSP's gapped (non-prelim): 166
length of query: 179
length of database: 14,973,337
effective HSP length: 93
effective length of query: 86
effective length of database: 9,153,583
effective search space: 787208138
effective search space used: 787208138
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 48 (23.1 bits)