BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy15036
(179 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|E2RQ15|RAB25_CANFA Ras-related protein Rab-25 OS=Canis familiaris GN=RAB25 PE=3 SV=1
Length = 213
Score = 57.0 bits (136), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 35/111 (31%), Positives = 56/111 (50%), Gaps = 11/111 (9%)
Query: 70 TVGIVFPAISV---TYSIGPRYFRFPLVSRFLSLTTGLYRGTMGFLLIFDVTNENSFKDV 126
T+G+ F +V T +I + + + R+ ++T+ YRG +G LL+FD+T ++ V
Sbjct: 44 TIGVEFSTRTVMLGTAAIKAQIWDTAGLERYRAITSAYYRGAVGALLVFDLTKHQTYAVV 103
Query: 127 EKWLLQIKVMDGALFTHFELQIVFM-RGCLELLQRCREVVTPDQIMFGSTQ 176
E+WL + L+ H E IV M G L + REV T + MF
Sbjct: 104 ERWLKE-------LYDHAEATIVVMLVGNKSDLHQAREVPTEEARMFAENN 147
>sp|Q9WTL2|RAB25_MOUSE Ras-related protein Rab-25 OS=Mus musculus GN=Rab25 PE=1 SV=2
Length = 213
Score = 56.6 bits (135), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 34/111 (30%), Positives = 56/111 (50%), Gaps = 11/111 (9%)
Query: 70 TVGIVFPAISV---TYSIGPRYFRFPLVSRFLSLTTGLYRGTMGFLLIFDVTNENSFKDV 126
T+G+ F +V T ++ + + + R+ ++T+ YRG +G LL+FD+T ++ V
Sbjct: 44 TIGVEFSTRTVMLGTAAVKAQIWDTAGLERYRAITSAYYRGAVGALLVFDLTKHQTYAVV 103
Query: 127 EKWLLQIKVMDGALFTHFELQIVFM-RGCLELLQRCREVVTPDQIMFGSTQ 176
E+WL + L+ H E IV M G L + REV T + MF
Sbjct: 104 ERWLKE-------LYDHAEATIVVMLVGNKSDLSQAREVPTEEACMFAENN 147
>sp|P25228|RAB3_DROME Ras-related protein Rab-3 OS=Drosophila melanogaster GN=Rab3 PE=1
SV=1
Length = 220
Score = 56.2 bits (134), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 22/40 (55%), Positives = 31/40 (77%)
Query: 95 SRFLSLTTGLYRGTMGFLLIFDVTNENSFKDVEKWLLQIK 134
R+ ++TT YRG MGF+L++DVTNE+SF V+ W+ QIK
Sbjct: 81 ERYRTITTAYYRGAMGFILMYDVTNEDSFNSVQDWVTQIK 120
>sp|Q58DW6|RAB25_BOVIN Ras-related protein Rab-25 OS=Bos taurus GN=RAB25 PE=2 SV=1
Length = 213
Score = 55.8 bits (133), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 35/111 (31%), Positives = 56/111 (50%), Gaps = 11/111 (9%)
Query: 70 TVGIVFPAISV---TYSIGPRYFRFPLVSRFLSLTTGLYRGTMGFLLIFDVTNENSFKDV 126
T+G+ F +V T +I + + + R+ ++T+ YRG +G LL+FD+T ++ V
Sbjct: 44 TIGVEFSTRTVMLGTAAIKAQIWDTAGLERYRAITSAYYRGAVGALLVFDLTKHQTYAVV 103
Query: 127 EKWLLQIKVMDGALFTHFELQIVFMR-GCLELLQRCREVVTPDQIMFGSTQ 176
E+WL + L+ H E IV M G L + REV T + MF
Sbjct: 104 ERWLKE-------LYDHAEATIVVMLVGNKSDLSQSREVPTEEARMFAENN 147
>sp|P57735|RAB25_HUMAN Ras-related protein Rab-25 OS=Homo sapiens GN=RAB25 PE=1 SV=2
Length = 213
Score = 55.5 bits (132), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 34/111 (30%), Positives = 56/111 (50%), Gaps = 11/111 (9%)
Query: 70 TVGIVFPAISV---TYSIGPRYFRFPLVSRFLSLTTGLYRGTMGFLLIFDVTNENSFKDV 126
T+G+ F +V T ++ + + + R+ ++T+ YRG +G LL+FD+T ++ V
Sbjct: 44 TIGVEFSTRTVMLGTAAVKAQIWDTAGLERYRAITSAYYRGAVGALLVFDLTKHQTYAVV 103
Query: 127 EKWLLQIKVMDGALFTHFELQIVFM-RGCLELLQRCREVVTPDQIMFGSTQ 176
E+WL + L+ H E IV M G L + REV T + MF
Sbjct: 104 ERWLKE-------LYDHAEATIVVMLVGNKSDLSQAREVPTEEARMFAENN 147
>sp|P46629|RAB25_RABIT Ras-related protein Rab-25 OS=Oryctolagus cuniculus GN=RAB25 PE=2
SV=1
Length = 213
Score = 55.5 bits (132), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 34/111 (30%), Positives = 56/111 (50%), Gaps = 11/111 (9%)
Query: 70 TVGIVFPAISV---TYSIGPRYFRFPLVSRFLSLTTGLYRGTMGFLLIFDVTNENSFKDV 126
T+G+ F +V T ++ + + + R+ ++T+ YRG +G LL+FD+T ++ V
Sbjct: 44 TIGVEFSTRTVLLGTAAVKAQIWDTAGLERYRAITSAYYRGAVGALLVFDLTKHQTYAVV 103
Query: 127 EKWLLQIKVMDGALFTHFELQIVFM-RGCLELLQRCREVVTPDQIMFGSTQ 176
E+WL + L+ H E IV M G L + REV T + MF
Sbjct: 104 ERWLKE-------LYDHAEATIVVMLVGNKSDLSQAREVPTEEARMFAENN 147
>sp|Q94986|RAB3_CAEEL Ras-related protein Rab-3 OS=Caenorhabditis elegans GN=rab-3 PE=2
SV=1
Length = 219
Score = 54.7 bits (130), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 21/40 (52%), Positives = 29/40 (72%)
Query: 95 SRFLSLTTGLYRGTMGFLLIFDVTNENSFKDVEKWLLQIK 134
R+ ++TT YRG MGF+L++D+TNE SF V+ W QIK
Sbjct: 82 ERYRTITTAYYRGAMGFILMYDITNEESFNSVQDWCTQIK 121
>sp|O13876|YPT4_SCHPO GTP-binding protein ypt4 OS=Schizosaccharomyces pombe (strain 972 /
ATCC 24843) GN=ypt4 PE=3 SV=1
Length = 234
Score = 54.7 bits (130), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 55/114 (48%), Gaps = 13/114 (11%)
Query: 70 TVGIVFPAISVTYSIGPRYFRFPLV-------SRFLSLTTGLYRGTMGFLLIFDVTNENS 122
TVGI F + ++ +G + R L +F S+ YRG G +L++DVTN++S
Sbjct: 41 TVGIDFASRIISVGMGNQQKRIKLQIWDTAGQEKFRSVARNYYRGAAGAVLVYDVTNKDS 100
Query: 123 FKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQRCREVVTPDQIMFGSTQ 176
F+++ WL I+ M + V + G LQ R+V T + F S +
Sbjct: 101 FEELSSWLSDIRAMAPSTI------CVVLAGSKSDLQNQRQVSTEEAAEFCSEK 148
>sp|Q63941|RAB3B_RAT Ras-related protein Rab-3B OS=Rattus norvegicus GN=Rab3b PE=1 SV=2
Length = 219
Score = 53.9 bits (128), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 21/39 (53%), Positives = 29/39 (74%)
Query: 96 RFLSLTTGLYRGTMGFLLIFDVTNENSFKDVEKWLLQIK 134
R+ ++TT YRG MGF+L++D+TNE SF V+ W QIK
Sbjct: 83 RYRTITTAYYRGAMGFILMYDITNEESFNAVQDWATQIK 121
>sp|Q9CZT8|RAB3B_MOUSE Ras-related protein Rab-3B OS=Mus musculus GN=Rab3b PE=1 SV=1
Length = 219
Score = 53.9 bits (128), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 21/39 (53%), Positives = 29/39 (74%)
Query: 96 RFLSLTTGLYRGTMGFLLIFDVTNENSFKDVEKWLLQIK 134
R+ ++TT YRG MGF+L++D+TNE SF V+ W QIK
Sbjct: 83 RYRTITTAYYRGAMGFILMYDITNEESFNAVQDWATQIK 121
>sp|Q5KTJ7|RAB3B_MESAU Ras-related protein Rab-3B OS=Mesocricetus auratus GN=RAB3B PE=2
SV=1
Length = 219
Score = 53.9 bits (128), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 21/39 (53%), Positives = 29/39 (74%)
Query: 96 RFLSLTTGLYRGTMGFLLIFDVTNENSFKDVEKWLLQIK 134
R+ ++TT YRG MGF+L++D+TNE SF V+ W QIK
Sbjct: 83 RYRTITTAYYRGAMGFILMYDITNEESFNAVQDWATQIK 121
>sp|P20337|RAB3B_HUMAN Ras-related protein Rab-3B OS=Homo sapiens GN=RAB3B PE=1 SV=2
Length = 219
Score = 53.9 bits (128), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 21/39 (53%), Positives = 29/39 (74%)
Query: 96 RFLSLTTGLYRGTMGFLLIFDVTNENSFKDVEKWLLQIK 134
R+ ++TT YRG MGF+L++D+TNE SF V+ W QIK
Sbjct: 83 RYRTITTAYYRGAMGFILMYDITNEESFNAVQDWATQIK 121
>sp|P11023|RAB3A_BOVIN Ras-related protein Rab-3A OS=Bos taurus GN=RAB3A PE=1 SV=3
Length = 220
Score = 53.9 bits (128), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 21/39 (53%), Positives = 29/39 (74%)
Query: 96 RFLSLTTGLYRGTMGFLLIFDVTNENSFKDVEKWLLQIK 134
R+ ++TT YRG MGF+L++D+TNE SF V+ W QIK
Sbjct: 83 RYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIK 121
>sp|P10948|RAB3B_BOVIN Ras-related protein Rab-3B OS=Bos taurus GN=RAB3B PE=2 SV=1
Length = 219
Score = 53.5 bits (127), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 21/40 (52%), Positives = 29/40 (72%)
Query: 95 SRFLSLTTGLYRGTMGFLLIFDVTNENSFKDVEKWLLQIK 134
R+ ++TT YRG MGF+L++D+TNE SF V+ W QIK
Sbjct: 82 ERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWATQIK 121
>sp|Q96E17|RAB3C_HUMAN Ras-related protein Rab-3C OS=Homo sapiens GN=RAB3C PE=2 SV=1
Length = 227
Score = 53.5 bits (127), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 21/41 (51%), Positives = 29/41 (70%)
Query: 95 SRFLSLTTGLYRGTMGFLLIFDVTNENSFKDVEKWLLQIKV 135
R+ ++TT YRG MGF+L++D+TNE SF V+ W QIK
Sbjct: 90 ERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKT 130
>sp|P63012|RAB3A_RAT Ras-related protein Rab-3A OS=Rattus norvegicus GN=Rab3a PE=1 SV=1
Length = 220
Score = 53.5 bits (127), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 21/39 (53%), Positives = 29/39 (74%)
Query: 96 RFLSLTTGLYRGTMGFLLIFDVTNENSFKDVEKWLLQIK 134
R+ ++TT YRG MGF+L++D+TNE SF V+ W QIK
Sbjct: 83 RYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIK 121
>sp|Q06AU3|RAB3A_PIG Ras-related protein Rab-3A OS=Sus scrofa GN=RAB3A PE=2 SV=1
Length = 220
Score = 53.5 bits (127), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 21/39 (53%), Positives = 29/39 (74%)
Query: 96 RFLSLTTGLYRGTMGFLLIFDVTNENSFKDVEKWLLQIK 134
R+ ++TT YRG MGF+L++D+TNE SF V+ W QIK
Sbjct: 83 RYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIK 121
>sp|P63011|RAB3A_MOUSE Ras-related protein Rab-3A OS=Mus musculus GN=Rab3a PE=1 SV=1
Length = 220
Score = 53.5 bits (127), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 21/39 (53%), Positives = 29/39 (74%)
Query: 96 RFLSLTTGLYRGTMGFLLIFDVTNENSFKDVEKWLLQIK 134
R+ ++TT YRG MGF+L++D+TNE SF V+ W QIK
Sbjct: 83 RYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIK 121
>sp|P62824|RAB3C_RAT Ras-related protein Rab-3C OS=Rattus norvegicus GN=Rab3c PE=1 SV=1
Length = 227
Score = 53.5 bits (127), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 21/41 (51%), Positives = 29/41 (70%)
Query: 95 SRFLSLTTGLYRGTMGFLLIFDVTNENSFKDVEKWLLQIKV 135
R+ ++TT YRG MGF+L++D+TNE SF V+ W QIK
Sbjct: 90 ERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKT 130
>sp|P62823|RAB3C_MOUSE Ras-related protein Rab-3C OS=Mus musculus GN=Rab3c PE=1 SV=1
Length = 227
Score = 53.5 bits (127), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 21/41 (51%), Positives = 29/41 (70%)
Query: 95 SRFLSLTTGLYRGTMGFLLIFDVTNENSFKDVEKWLLQIKV 135
R+ ++TT YRG MGF+L++D+TNE SF V+ W QIK
Sbjct: 90 ERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKT 130
>sp|Q4R4R9|RAB3A_MACFA Ras-related protein Rab-3A OS=Macaca fascicularis GN=RAB3A PE=2
SV=1
Length = 220
Score = 53.5 bits (127), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 21/39 (53%), Positives = 29/39 (74%)
Query: 96 RFLSLTTGLYRGTMGFLLIFDVTNENSFKDVEKWLLQIK 134
R+ ++TT YRG MGF+L++D+TNE SF V+ W QIK
Sbjct: 83 RYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIK 121
>sp|P20336|RAB3A_HUMAN Ras-related protein Rab-3A OS=Homo sapiens GN=RAB3A PE=1 SV=1
Length = 220
Score = 53.5 bits (127), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 21/39 (53%), Positives = 29/39 (74%)
Query: 96 RFLSLTTGLYRGTMGFLLIFDVTNENSFKDVEKWLLQIK 134
R+ ++TT YRG MGF+L++D+TNE SF V+ W QIK
Sbjct: 83 RYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIK 121
>sp|P10949|RAB3C_BOVIN Ras-related protein Rab-3C OS=Bos taurus GN=RAB3C PE=2 SV=3
Length = 227
Score = 53.5 bits (127), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 21/41 (51%), Positives = 29/41 (70%)
Query: 95 SRFLSLTTGLYRGTMGFLLIFDVTNENSFKDVEKWLLQIKV 135
R+ ++TT YRG MGF+L++D+TNE SF V+ W QIK
Sbjct: 90 ERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKT 130
>sp|Q9LK99|RAA1G_ARATH Ras-related protein RABA1g OS=Arabidopsis thaliana GN=RABA1G PE=2
SV=1
Length = 217
Score = 53.1 bits (126), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/113 (28%), Positives = 56/113 (49%), Gaps = 11/113 (9%)
Query: 70 TVGIVFPAISVTYS---IGPRYFRFPLVSRFLSLTTGLYRGTMGFLLIFDVTNENSFKDV 126
T+G+ F S+ + + + R+ ++T+ YRG +G LL++DVT +F++V
Sbjct: 45 TIGVEFATRSIHVDEKIVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENV 104
Query: 127 EKWLLQIKVMDGALFTHFELQIVFM-RGCLELLQRCREVVTPDQIMFGSTQSS 178
E+WL +++ H E IV M G L+ R V T D F +++
Sbjct: 105 ERWLKELR-------DHTEANIVIMLVGNKADLRHLRAVSTEDAKAFAERENT 150
>sp|P51159|RB27A_HUMAN Ras-related protein Rab-27A OS=Homo sapiens GN=RAB27A PE=1 SV=3
Length = 221
Score = 52.4 bits (124), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/79 (43%), Positives = 43/79 (54%), Gaps = 13/79 (16%)
Query: 70 TVGIVFPAISVTY-SIGP-----RYFRFPLV-------SRFLSLTTGLYRGTMGFLLIFD 116
TVGI F V Y + GP R R L RF SLTT +R MGFLL+FD
Sbjct: 41 TVGIDFREKRVVYRASGPDGATGRGQRIHLQLWDTAGQERFRSLTTAFFRDAMGFLLLFD 100
Query: 117 VTNENSFKDVEKWLLQIKV 135
+TNE SF +V W+ Q+++
Sbjct: 101 LTNEQSFLNVRNWISQLQM 119
>sp|Q9ERI2|RB27A_MOUSE Ras-related protein Rab-27A OS=Mus musculus GN=Rab27a PE=1 SV=1
Length = 221
Score = 52.4 bits (124), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/79 (43%), Positives = 43/79 (54%), Gaps = 13/79 (16%)
Query: 70 TVGIVFPAISVTY-SIGP-----RYFRFPLV-------SRFLSLTTGLYRGTMGFLLIFD 116
TVGI F V Y + GP R R L RF SLTT +R MGFLL+FD
Sbjct: 41 TVGIDFREKRVVYRANGPDGAVGRGQRIHLQLWDTAGQERFRSLTTAFFRDAMGFLLLFD 100
Query: 117 VTNENSFKDVEKWLLQIKV 135
+TNE SF +V W+ Q+++
Sbjct: 101 LTNEQSFLNVRNWISQLQM 119
>sp|P23640|RB27A_RAT Ras-related protein Rab-27A OS=Rattus norvegicus GN=Rab27a PE=1
SV=1
Length = 221
Score = 52.4 bits (124), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/79 (43%), Positives = 43/79 (54%), Gaps = 13/79 (16%)
Query: 70 TVGIVFPAISVTY-SIGP-----RYFRFPLV-------SRFLSLTTGLYRGTMGFLLIFD 116
TVGI F V Y + GP R R L RF SLTT +R MGFLL+FD
Sbjct: 41 TVGIDFREKRVVYRANGPDGTVGRGQRIHLQLWDTAGQERFRSLTTAFFRDAMGFLLLFD 100
Query: 117 VTNENSFKDVEKWLLQIKV 135
+TNE SF +V W+ Q+++
Sbjct: 101 LTNEQSFLNVRNWISQLQM 119
>sp|Q1HE58|RB27A_CANFA Ras-related protein Rab-27A OS=Canis familiaris GN=RAB27A PE=2 SV=1
Length = 221
Score = 52.0 bits (123), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/79 (43%), Positives = 43/79 (54%), Gaps = 13/79 (16%)
Query: 70 TVGIVFPAISVTY-SIGP-----RYFRFPLV-------SRFLSLTTGLYRGTMGFLLIFD 116
TVGI F V Y + GP R R L RF SLTT +R MGFLL+FD
Sbjct: 41 TVGIDFREKRVVYRANGPDGAIGRGQRIHLQLWDTAGQERFRSLTTAFFRDAMGFLLLFD 100
Query: 117 VTNENSFKDVEKWLLQIKV 135
+TNE SF +V W+ Q+++
Sbjct: 101 LTNEQSFLNVRNWISQLQM 119
>sp|Q4LE85|RB27A_PIG Ras-related protein Rab-27A OS=Sus scrofa GN=RAB27A PE=2 SV=1
Length = 221
Score = 52.0 bits (123), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/79 (43%), Positives = 43/79 (54%), Gaps = 13/79 (16%)
Query: 70 TVGIVFPAISVTY-SIGP-----RYFRFPLV-------SRFLSLTTGLYRGTMGFLLIFD 116
TVGI F V Y + GP R R L RF SLTT +R MGFLL+FD
Sbjct: 41 TVGIDFREKRVVYRANGPDGAIGRGQRIHLQLWDTAGQERFRSLTTAFFRDAMGFLLLFD 100
Query: 117 VTNENSFKDVEKWLLQIKV 135
+TNE SF +V W+ Q+++
Sbjct: 101 LTNEQSFLNVRNWISQLQM 119
>sp|P41924|RYL1_YARLI Ras-like GTP-binding protein RYL1 OS=Yarrowia lipolytica (strain
CLIB 122 / E 150) GN=RYL1 PE=3 SV=1
Length = 203
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 40/70 (57%), Gaps = 7/70 (10%)
Query: 70 TVGIVFPAISVTYSIGPRYFRFPL-----VSRFLSLTTGLYRGTMGFLLIFDVTNENSFK 124
T+GI F ++ IG + + + RF ++TT YRG MG LL++DVT+E SF
Sbjct: 43 TIGIDFKIRTI--DIGNQRVKLQVWDTAGQERFRTITTAYYRGAMGILLVYDVTDEKSFN 100
Query: 125 DVEKWLLQIK 134
++E W ++
Sbjct: 101 NIENWYQNVQ 110
>sp|O95716|RAB3D_HUMAN Ras-related protein Rab-3D OS=Homo sapiens GN=RAB3D PE=1 SV=1
Length = 219
Score = 51.6 bits (122), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 20/40 (50%), Positives = 28/40 (70%)
Query: 95 SRFLSLTTGLYRGTMGFLLIFDVTNENSFKDVEKWLLQIK 134
R+ ++TT YRG MGFLL++D+ N+ SF V+ W QIK
Sbjct: 82 ERYRTITTAYYRGAMGFLLMYDIANQESFAAVQDWATQIK 121
>sp|Q9FJH0|RAA1F_ARATH Ras-related protein RABA1f OS=Arabidopsis thaliana GN=RABA1F PE=2
SV=1
Length = 217
Score = 51.6 bits (122), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 56/113 (49%), Gaps = 11/113 (9%)
Query: 70 TVGIVFPAISVTYS---IGPRYFRFPLVSRFLSLTTGLYRGTMGFLLIFDVTNENSFKDV 126
T+G+ F S+ + + + R+ ++T+ YRG +G LL++DVT +F++V
Sbjct: 45 TIGVEFATRSIHVDDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENV 104
Query: 127 EKWLLQIKVMDGALFTHFELQIVFM-RGCLELLQRCREVVTPDQIMFGSTQSS 178
E+WL +++ H + IV M G L+ R V T D F +++
Sbjct: 105 ERWLKELR-------DHTDANIVIMFVGNKADLRHLRAVSTEDAKAFAERENT 150
>sp|P51153|RAB13_HUMAN Ras-related protein Rab-13 OS=Homo sapiens GN=RAB13 PE=1 SV=1
Length = 203
Score = 51.6 bits (122), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 42/74 (56%), Gaps = 3/74 (4%)
Query: 64 TGTHGKTVGIVFPAISVTYS---IGPRYFRFPLVSRFLSLTTGLYRGTMGFLLIFDVTNE 120
T+ T+GI F +V I + + RF ++TT YRG MG +L++D+T+E
Sbjct: 34 NNTYISTIGIDFKIRTVDIEGKKIKLQVWDTAGQERFKTITTAYYRGAMGIILVYDITDE 93
Query: 121 NSFKDVEKWLLQIK 134
SF++++ W+ IK
Sbjct: 94 KSFENIQNWMKSIK 107
>sp|P35286|RAB13_RAT Ras-related protein Rab-13 OS=Rattus norvegicus GN=Rab13 PE=2 SV=2
Length = 203
Score = 51.6 bits (122), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 42/74 (56%), Gaps = 3/74 (4%)
Query: 64 TGTHGKTVGIVFPAISVTYS---IGPRYFRFPLVSRFLSLTTGLYRGTMGFLLIFDVTNE 120
T+ T+GI F +V I + + RF ++TT YRG MG +L++D+T+E
Sbjct: 34 NSTYISTIGIDFKIRTVEIEGKRIKLQVWDTAGQERFKTITTAYYRGAMGIILVYDITDE 93
Query: 121 NSFKDVEKWLLQIK 134
SF++++ W+ IK
Sbjct: 94 KSFENIQNWMKSIK 107
>sp|P35276|RAB3D_MOUSE Ras-related protein Rab-3D OS=Mus musculus GN=Rab3d PE=1 SV=1
Length = 219
Score = 51.2 bits (121), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 20/39 (51%), Positives = 28/39 (71%)
Query: 96 RFLSLTTGLYRGTMGFLLIFDVTNENSFKDVEKWLLQIK 134
R+ ++TT YRG MGFLL++D+ N+ SF V+ W QIK
Sbjct: 83 RYRTITTAYYRGAMGFLLMYDIANQESFTAVQDWATQIK 121
>sp|Q9DD03|RAB13_MOUSE Ras-related protein Rab-13 OS=Mus musculus GN=Rab13 PE=1 SV=1
Length = 202
Score = 51.2 bits (121), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 42/74 (56%), Gaps = 3/74 (4%)
Query: 64 TGTHGKTVGIVFPAISVTYS---IGPRYFRFPLVSRFLSLTTGLYRGTMGFLLIFDVTNE 120
T+ T+GI F +V I + + RF ++TT YRG MG +L++D+T+E
Sbjct: 34 NSTYISTIGIDFKIRTVDIEGKRIKLQVWDTAGQERFKTITTAYYRGAMGIILVYDITDE 93
Query: 121 NSFKDVEKWLLQIK 134
SF++++ W+ IK
Sbjct: 94 KSFENIQNWMKSIK 107
>sp|Q5KTJ6|RAB13_MESAU Ras-related protein Rab-13 OS=Mesocricetus auratus GN=RAB13 PE=2
SV=1
Length = 203
Score = 51.2 bits (121), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 42/74 (56%), Gaps = 3/74 (4%)
Query: 64 TGTHGKTVGIVFPAISVTYS---IGPRYFRFPLVSRFLSLTTGLYRGTMGFLLIFDVTNE 120
T+ T+GI F +V I + + RF ++TT YRG MG +L++D+T+E
Sbjct: 34 NNTYISTIGIDFKIRTVEIEGKRIKLQVWDTAGQERFKTITTAYYRGAMGIILVYDITDE 93
Query: 121 NSFKDVEKWLLQIK 134
SF++++ W+ IK
Sbjct: 94 KSFENIQNWMKSIK 107
>sp|Q63942|RAB3D_RAT GTP-binding protein Rab-3D OS=Rattus norvegicus GN=Rab3d PE=1 SV=2
Length = 219
Score = 51.2 bits (121), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 20/39 (51%), Positives = 28/39 (71%)
Query: 96 RFLSLTTGLYRGTMGFLLIFDVTNENSFKDVEKWLLQIK 134
R+ ++TT YRG MGFLL++D+ N+ SF V+ W QIK
Sbjct: 83 RYRTITTAYYRGAMGFLLMYDIANQESFTAVQDWATQIK 121
>sp|Q58DS5|RAB13_BOVIN Ras-related protein Rab-13 OS=Bos taurus GN=RAB13 PE=2 SV=1
Length = 203
Score = 51.2 bits (121), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 42/74 (56%), Gaps = 3/74 (4%)
Query: 64 TGTHGKTVGIVFPAISVTYS---IGPRYFRFPLVSRFLSLTTGLYRGTMGFLLIFDVTNE 120
T+ T+GI F +V I + + RF ++TT YRG MG +L++D+T+E
Sbjct: 34 NNTYISTIGIDFRIRTVDIEGKKIKLQVWDTAGQERFKTITTAYYRGAMGIILVYDITDE 93
Query: 121 NSFKDVEKWLLQIK 134
SF++++ W+ IK
Sbjct: 94 KSFENIQNWMKSIK 107
>sp|Q550H6|RB11C_DICDI Ras-related protein Rab-11C OS=Dictyostelium discoideum GN=rab11C
PE=1 SV=1
Length = 224
Score = 51.2 bits (121), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 30/110 (27%), Positives = 57/110 (51%), Gaps = 9/110 (8%)
Query: 70 TVGIVFPAISV---TYSIGPRYFRFPLVSRFLSLTTGLYRGTMGFLLIFDVTNENSFKDV 126
T+G+ F S+ +I + + RF ++T+G YRG +G ++++D+T++ SFK+V
Sbjct: 42 TIGVDFGTKSIEIDNKTITAQCWDTAGQERFRAVTSGYYRGAVGAMIVYDITSKISFKNV 101
Query: 127 EKWLLQIKVMDGALFTHFELQIVFMRGCLELLQRCREVVTPDQIMFGSTQ 176
+WL +++ M ++ M G L+ REV T + F +
Sbjct: 102 TRWLNELREMAEQDI------LIMMVGNKSDLEMSREVPTKEAQAFAESN 145
>sp|Q9SF91|RAE1E_ARATH Ras-related protein RABE1e OS=Arabidopsis thaliana GN=RABE1E PE=1
SV=1
Length = 218
Score = 51.2 bits (121), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 19/39 (48%), Positives = 29/39 (74%)
Query: 96 RFLSLTTGLYRGTMGFLLIFDVTNENSFKDVEKWLLQIK 134
RF ++TT YRG MG LL++DVT+E+SF ++ W+ I+
Sbjct: 76 RFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMKNIE 114
>sp|Q9LZD4|RAE1D_ARATH Ras-related protein RABE1d OS=Arabidopsis thaliana GN=RABE1D PE=1
SV=1
Length = 216
Score = 51.2 bits (121), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 19/39 (48%), Positives = 29/39 (74%)
Query: 96 RFLSLTTGLYRGTMGFLLIFDVTNENSFKDVEKWLLQIK 134
RF ++TT YRG MG LL++DVT+E+SF ++ W+ I+
Sbjct: 76 RFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMKNIE 114
>sp|Q39433|RB1BV_BETVU Ras-related protein RAB1BV OS=Beta vulgaris GN=RAB1BV PE=2 SV=1
Length = 215
Score = 50.8 bits (120), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 19/39 (48%), Positives = 29/39 (74%)
Query: 96 RFLSLTTGLYRGTMGFLLIFDVTNENSFKDVEKWLLQIK 134
RF ++TT YRG MG LL++DVT+E+SF ++ W+ I+
Sbjct: 76 RFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIE 114
>sp|Q92930|RAB8B_HUMAN Ras-related protein Rab-8B OS=Homo sapiens GN=RAB8B PE=1 SV=2
Length = 207
Score = 50.4 bits (119), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 18/39 (46%), Positives = 29/39 (74%)
Query: 96 RFLSLTTGLYRGTMGFLLIFDVTNENSFKDVEKWLLQIK 134
RF ++TT YRG MG +L++D+TNE SF +++ W+ I+
Sbjct: 69 RFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIE 107
>sp|Q5F470|RAB8A_CHICK Ras-related protein Rab-8A OS=Gallus gallus GN=RAB8A PE=2 SV=1
Length = 207
Score = 50.4 bits (119), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 18/40 (45%), Positives = 29/40 (72%)
Query: 95 SRFLSLTTGLYRGTMGFLLIFDVTNENSFKDVEKWLLQIK 134
RF ++TT YRG MG +L++D+TNE SF+++ W+ I+
Sbjct: 68 ERFRTITTAYYRGAMGIMLVYDITNEKSFENIRNWVRNIE 107
>sp|O24466|RAE1A_ARATH Ras-related protein RABE1a OS=Arabidopsis thaliana GN=RABE1A PE=1
SV=1
Length = 216
Score = 50.4 bits (119), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 19/39 (48%), Positives = 29/39 (74%)
Query: 96 RFLSLTTGLYRGTMGFLLIFDVTNENSFKDVEKWLLQIK 134
RF ++TT YRG MG LL++DVT+E+SF ++ W+ I+
Sbjct: 76 RFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIE 114
>sp|Q9SN35|RAA1D_ARATH Ras-related protein RABA1d OS=Arabidopsis thaliana GN=RABA1D PE=2
SV=1
Length = 214
Score = 50.4 bits (119), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 32/112 (28%), Positives = 56/112 (50%), Gaps = 11/112 (9%)
Query: 70 TVGIVFPAISVTYS---IGPRYFRFPLVSRFLSLTTGLYRGTMGFLLIFDVTNENSFKDV 126
T+G+ F S+ + I + + R+ ++T+ YRG +G LL++DVT ++F++V
Sbjct: 45 TIGVEFATRSLNVNEKVIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHSTFENV 104
Query: 127 EKWLLQIKVMDGALFTHFELQIVFM-RGCLELLQRCREVVTPDQIMFGSTQS 177
E+WL +++ H + IV M G L+ V T D F +S
Sbjct: 105 ERWLRELR-------DHTDPNIVVMLVGNKSDLRHLVAVQTEDAKSFAENES 149
>sp|P28186|RAE1C_ARATH Ras-related protein RABE1c OS=Arabidopsis thaliana GN=RABE1C PE=1
SV=1
Length = 216
Score = 50.4 bits (119), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 19/39 (48%), Positives = 29/39 (74%)
Query: 96 RFLSLTTGLYRGTMGFLLIFDVTNENSFKDVEKWLLQIK 134
RF ++TT YRG MG LL++DVT+E+SF ++ W+ I+
Sbjct: 76 RFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIE 114
>sp|P70550|RAB8B_RAT Ras-related protein Rab-8B OS=Rattus norvegicus GN=Rab8b PE=1 SV=1
Length = 207
Score = 50.4 bits (119), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 18/39 (46%), Positives = 29/39 (74%)
Query: 96 RFLSLTTGLYRGTMGFLLIFDVTNENSFKDVEKWLLQIK 134
RF ++TT YRG MG +L++D+TNE SF +++ W+ I+
Sbjct: 69 RFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIE 107
>sp|P61028|RAB8B_MOUSE Ras-related protein Rab-8B OS=Mus musculus GN=Rab8b PE=1 SV=1
Length = 207
Score = 50.4 bits (119), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 18/39 (46%), Positives = 29/39 (74%)
Query: 96 RFLSLTTGLYRGTMGFLLIFDVTNENSFKDVEKWLLQIK 134
RF ++TT YRG MG +L++D+TNE SF +++ W+ I+
Sbjct: 69 RFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIE 107
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.329 0.142 0.438
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 63,806,346
Number of Sequences: 539616
Number of extensions: 2433754
Number of successful extensions: 6579
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 420
Number of HSP's successfully gapped in prelim test: 23
Number of HSP's that attempted gapping in prelim test: 6159
Number of HSP's gapped (non-prelim): 443
length of query: 179
length of database: 191,569,459
effective HSP length: 110
effective length of query: 69
effective length of database: 132,211,699
effective search space: 9122607231
effective search space used: 9122607231
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 57 (26.6 bits)