Query psy15036
Match_columns 179
No_of_seqs 177 out of 1462
Neff 8.4
Searched_HMMs 46136
Date Fri Aug 16 18:48:00 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15036.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/15036hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0084|consensus 100.0 2E-40 4.2E-45 248.6 12.7 136 36-178 2-146 (205)
2 KOG0098|consensus 100.0 5.6E-37 1.2E-41 228.1 11.6 134 39-179 2-144 (216)
3 KOG0087|consensus 100.0 4.7E-37 1E-41 232.5 11.1 136 36-178 7-151 (222)
4 KOG0078|consensus 100.0 2.4E-36 5.2E-41 229.1 13.4 133 39-178 8-149 (207)
5 KOG0080|consensus 100.0 1.5E-36 3.3E-41 221.0 9.4 136 38-179 6-150 (209)
6 KOG0092|consensus 100.0 4.4E-35 9.6E-40 219.0 12.6 131 42-179 4-143 (200)
7 KOG0094|consensus 100.0 5.2E-35 1.1E-39 219.0 10.7 141 32-178 11-160 (221)
8 KOG0079|consensus 100.0 3.1E-35 6.8E-40 211.6 6.8 133 37-177 2-143 (198)
9 KOG0095|consensus 100.0 5.4E-34 1.2E-38 205.7 11.4 132 38-176 2-142 (213)
10 KOG0086|consensus 100.0 5E-34 1.1E-38 206.5 8.4 134 36-176 2-144 (214)
11 KOG0091|consensus 100.0 2.6E-33 5.6E-38 204.7 6.9 135 39-177 4-147 (213)
12 KOG0093|consensus 100.0 3.1E-32 6.8E-37 195.9 11.6 135 36-177 14-157 (193)
13 KOG0081|consensus 100.0 3E-32 6.5E-37 198.4 7.0 134 39-178 5-156 (219)
14 KOG0088|consensus 100.0 2.8E-32 6.1E-37 198.4 5.1 133 39-178 9-150 (218)
15 KOG0394|consensus 100.0 4.1E-31 8.8E-36 196.4 8.5 134 42-178 8-152 (210)
16 cd04121 Rab40 Rab40 subfamily. 100.0 2.7E-29 5.9E-34 192.3 13.9 131 39-177 2-141 (189)
17 cd04172 Rnd3_RhoE_Rho8 Rnd3/Rh 100.0 1.5E-28 3.2E-33 187.1 13.0 128 42-178 4-153 (182)
18 KOG0097|consensus 100.0 2.9E-29 6.3E-34 179.9 8.5 133 39-178 7-148 (215)
19 cd04120 Rab12 Rab12 subfamily. 100.0 1.6E-28 3.4E-33 189.8 13.0 125 45-176 2-135 (202)
20 KOG0083|consensus 100.0 6.4E-29 1.4E-33 176.4 7.3 124 47-177 2-134 (192)
21 cd04133 Rop_like Rop subfamily 100.0 5.2E-28 1.1E-32 183.2 12.4 125 44-177 2-146 (176)
22 cd04131 Rnd Rnd subfamily. Th 100.0 9.5E-28 2.1E-32 182.0 12.5 127 43-178 1-149 (178)
23 cd04174 Rnd1_Rho6 Rnd1/Rho6 su 100.0 1.9E-27 4.1E-32 187.3 14.0 129 41-178 11-161 (232)
24 cd01875 RhoG RhoG subfamily. 99.9 5.7E-27 1.2E-31 179.3 12.9 126 43-177 3-150 (191)
25 PLN00023 GTP-binding protein; 99.9 1.7E-26 3.7E-31 188.1 13.8 139 40-179 18-190 (334)
26 cd04122 Rab14 Rab14 subfamily. 99.9 2.5E-26 5.3E-31 171.3 13.4 129 42-177 1-138 (166)
27 cd04102 RabL3 RabL3 (Rab-like3 99.9 1.9E-26 4E-31 178.2 12.7 134 44-177 1-164 (202)
28 PF00071 Ras: Ras family; Int 99.9 2.7E-26 5.9E-31 169.8 12.6 126 45-177 1-135 (162)
29 KOG0395|consensus 99.9 1.6E-25 3.4E-30 172.2 14.3 129 43-178 3-140 (196)
30 cd04117 Rab15 Rab15 subfamily. 99.9 1.7E-25 3.7E-30 166.4 13.4 127 44-177 1-136 (161)
31 cd01874 Cdc42 Cdc42 subfamily. 99.9 1.3E-25 2.8E-30 169.6 12.2 126 43-177 1-148 (175)
32 cd04127 Rab27A Rab27a subfamil 99.9 3.4E-25 7.3E-30 166.9 13.6 132 41-177 2-151 (180)
33 PLN03110 Rab GTPase; Provision 99.9 5.8E-25 1.3E-29 171.4 13.9 132 39-177 8-148 (216)
34 cd01867 Rab8_Rab10_Rab13_like 99.9 5.6E-25 1.2E-29 164.2 13.2 130 41-177 1-139 (167)
35 cd04128 Spg1 Spg1p. Spg1p (se 99.9 3.5E-25 7.5E-30 168.4 12.1 126 44-177 1-140 (182)
36 cd04173 Rnd2_Rho7 Rnd2/Rho7 su 99.9 4.6E-25 1E-29 172.7 12.9 126 44-178 2-149 (222)
37 cd04107 Rab32_Rab38 Rab38/Rab3 99.9 7.1E-25 1.5E-29 168.7 13.7 132 44-177 1-141 (201)
38 cd04141 Rit_Rin_Ric Rit/Rin/Ri 99.9 5.3E-25 1.1E-29 165.7 12.4 127 43-177 2-138 (172)
39 KOG0393|consensus 99.9 6.6E-25 1.4E-29 167.0 12.6 128 42-178 3-153 (198)
40 cd04109 Rab28 Rab28 subfamily. 99.9 1.2E-24 2.6E-29 169.3 13.7 130 44-177 1-140 (215)
41 cd01873 RhoBTB RhoBTB subfamil 99.9 6.7E-25 1.4E-29 168.7 12.1 126 43-178 2-171 (195)
42 cd04111 Rab39 Rab39 subfamily. 99.9 2E-24 4.3E-29 167.9 13.7 131 42-177 1-140 (211)
43 cd01865 Rab3 Rab3 subfamily. 99.9 2.1E-24 4.5E-29 160.8 13.1 127 44-177 2-137 (165)
44 cd01864 Rab19 Rab19 subfamily. 99.9 4.9E-24 1.1E-28 158.6 13.4 130 41-177 1-139 (165)
45 cd04126 Rab20 Rab20 subfamily. 99.9 2.6E-24 5.7E-29 168.3 12.2 124 44-177 1-150 (220)
46 cd04110 Rab35 Rab35 subfamily. 99.9 6E-24 1.3E-28 163.5 13.7 130 40-177 3-141 (199)
47 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 99.9 6E-24 1.3E-28 158.1 13.3 129 42-177 1-138 (166)
48 cd04108 Rab36_Rab34 Rab34/Rab3 99.9 6E-24 1.3E-28 159.7 13.3 126 45-177 2-139 (170)
49 cd01871 Rac1_like Rac1-like su 99.9 4.8E-24 1E-28 160.9 12.4 125 44-177 2-148 (174)
50 cd01866 Rab2 Rab2 subfamily. 99.9 1.3E-23 2.8E-28 157.0 13.6 131 40-177 1-140 (168)
51 cd04125 RabA_like RabA-like su 99.9 1E-23 2.3E-28 160.4 13.2 127 44-177 1-136 (188)
52 PLN03071 GTP-binding nuclear p 99.9 9.4E-24 2E-28 165.0 13.3 126 41-176 11-145 (219)
53 cd01868 Rab11_like Rab11-like. 99.9 1.2E-23 2.7E-28 156.1 13.3 128 42-176 2-138 (165)
54 cd04119 RJL RJL (RabJ-Like) su 99.9 1E-23 2.3E-28 156.0 12.8 132 44-177 1-141 (168)
55 PLN03108 Rab family protein; P 99.9 1.1E-23 2.4E-28 163.4 13.5 131 40-177 3-142 (210)
56 cd04136 Rap_like Rap-like subf 99.9 7.6E-24 1.6E-28 156.5 11.7 127 44-177 2-137 (163)
57 smart00176 RAN Ran (Ras-relate 99.9 1.3E-23 2.7E-28 162.2 12.0 119 48-176 1-127 (200)
58 cd04116 Rab9 Rab9 subfamily. 99.9 3.9E-23 8.4E-28 154.3 13.6 132 42-177 4-144 (170)
59 cd04106 Rab23_lke Rab23-like s 99.9 2.7E-23 5.8E-28 153.6 12.3 127 44-177 1-137 (162)
60 cd04134 Rho3 Rho3 subfamily. 99.9 2.1E-23 4.5E-28 159.2 11.7 124 45-177 2-147 (189)
61 cd04176 Rap2 Rap2 subgroup. T 99.9 3E-23 6.6E-28 153.7 12.2 126 43-176 1-136 (163)
62 cd04144 Ras2 Ras2 subfamily. 99.9 1.8E-23 3.9E-28 159.6 11.2 128 45-177 1-137 (190)
63 cd04115 Rab33B_Rab33A Rab33B/R 99.9 5E-23 1.1E-27 154.2 13.0 129 43-177 2-140 (170)
64 cd04112 Rab26 Rab26 subfamily. 99.9 3.9E-23 8.4E-28 157.9 12.5 127 44-177 1-137 (191)
65 PTZ00099 rab6; Provisional 99.9 5.9E-23 1.3E-27 155.5 13.3 110 61-177 3-116 (176)
66 PTZ00369 Ras-like protein; Pro 99.9 6E-23 1.3E-27 156.6 13.0 128 43-177 5-141 (189)
67 KOG4252|consensus 99.9 1.6E-24 3.4E-29 160.9 3.5 132 37-176 14-154 (246)
68 cd04175 Rap1 Rap1 subgroup. T 99.9 5.6E-23 1.2E-27 152.6 11.8 126 44-177 2-137 (164)
69 cd04113 Rab4 Rab4 subfamily. 99.9 1.1E-22 2.4E-27 150.5 12.7 127 44-177 1-136 (161)
70 cd04101 RabL4 RabL4 (Rab-like4 99.9 1.6E-22 3.4E-27 149.9 13.2 126 44-176 1-137 (164)
71 cd04143 Rhes_like Rhes_like su 99.9 8.4E-23 1.8E-27 162.4 12.0 130 44-175 1-142 (247)
72 cd04103 Centaurin_gamma Centau 99.9 1.1E-22 2.4E-27 151.3 11.2 121 44-177 1-132 (158)
73 cd04140 ARHI_like ARHI subfami 99.9 2E-22 4.2E-27 150.1 12.4 129 44-177 2-139 (165)
74 cd04130 Wrch_1 Wrch-1 subfamil 99.9 1.6E-22 3.5E-27 151.8 11.6 125 44-177 1-147 (173)
75 cd01892 Miro2 Miro2 subfamily. 99.9 1.6E-22 3.4E-27 151.8 10.8 127 42-177 3-139 (169)
76 cd04132 Rho4_like Rho4-like su 99.9 3.5E-22 7.6E-27 151.5 12.4 126 44-177 1-140 (187)
77 PLN03118 Rab family protein; P 99.9 7.8E-22 1.7E-26 152.9 14.0 135 37-177 8-151 (211)
78 cd00877 Ran Ran (Ras-related n 99.9 6.3E-22 1.4E-26 148.0 12.5 123 44-176 1-132 (166)
79 cd04118 Rab24 Rab24 subfamily. 99.9 6.5E-22 1.4E-26 150.8 12.6 125 44-176 1-139 (193)
80 smart00174 RHO Rho (Ras homolo 99.9 3.7E-22 7.9E-27 149.4 11.0 123 47-178 3-146 (174)
81 cd04138 H_N_K_Ras_like H-Ras/N 99.9 7.5E-22 1.6E-26 145.2 12.4 126 44-177 2-136 (162)
82 smart00173 RAS Ras subfamily o 99.9 8.1E-22 1.8E-26 146.1 11.6 127 44-177 1-136 (164)
83 cd01861 Rab6 Rab6 subfamily. 99.9 1.5E-21 3.4E-26 144.0 13.0 127 44-177 1-136 (161)
84 cd04124 RabL2 RabL2 subfamily. 99.9 1E-21 2.2E-26 145.9 12.0 122 44-176 1-131 (161)
85 cd04145 M_R_Ras_like M-Ras/R-R 99.9 3E-21 6.5E-26 142.7 12.6 128 43-177 2-138 (164)
86 smart00175 RAB Rab subfamily o 99.9 3.3E-21 7.2E-26 142.3 12.8 126 44-176 1-135 (164)
87 cd04114 Rab30 Rab30 subfamily. 99.9 5.5E-21 1.2E-25 142.2 13.8 130 39-175 3-141 (169)
88 cd04142 RRP22 RRP22 subfamily. 99.9 2.3E-21 5E-26 149.3 11.8 125 44-175 1-145 (198)
89 cd04146 RERG_RasL11_like RERG/ 99.9 1.9E-21 4.2E-26 144.5 10.4 125 45-177 1-137 (165)
90 cd01860 Rab5_related Rab5-rela 99.9 8E-21 1.7E-25 140.4 13.2 128 43-177 1-137 (163)
91 cd04148 RGK RGK subfamily. Th 99.9 3.9E-21 8.5E-26 150.4 12.0 126 44-177 1-137 (221)
92 cd04177 RSR1 RSR1 subgroup. R 99.9 7.8E-21 1.7E-25 141.9 12.5 127 44-177 2-137 (168)
93 cd04123 Rab21 Rab21 subfamily. 99.8 2E-20 4.4E-25 137.5 13.1 126 44-176 1-135 (162)
94 cd04135 Tc10 TC10 subfamily. 99.8 1.1E-20 2.3E-25 141.5 11.5 125 44-177 1-147 (174)
95 cd04162 Arl9_Arfrp2_like Arl9/ 99.8 3.4E-21 7.3E-26 143.9 8.4 121 46-176 2-133 (164)
96 cd04149 Arf6 Arf6 subfamily. 99.8 1.9E-20 4E-25 140.4 11.1 119 43-173 9-135 (168)
97 cd01870 RhoA_like RhoA-like su 99.8 4.1E-20 9E-25 138.4 12.0 125 44-177 2-148 (175)
98 cd01862 Rab7 Rab7 subfamily. 99.8 6.6E-20 1.4E-24 136.5 12.9 131 44-177 1-140 (172)
99 cd01863 Rab18 Rab18 subfamily. 99.8 7.8E-20 1.7E-24 135.0 13.0 127 44-177 1-136 (161)
100 cd04150 Arf1_5_like Arf1-Arf5- 99.8 7.3E-20 1.6E-24 135.9 11.1 107 44-160 1-115 (159)
101 PLN00223 ADP-ribosylation fact 99.8 8.5E-20 1.8E-24 138.6 11.4 117 43-171 17-141 (181)
102 cd04129 Rho2 Rho2 subfamily. 99.8 1.1E-19 2.3E-24 138.4 11.9 125 44-177 2-146 (187)
103 PTZ00132 GTP-binding nuclear p 99.8 1.9E-19 4.1E-24 139.9 13.4 126 40-175 6-140 (215)
104 cd04158 ARD1 ARD1 subfamily. 99.8 8E-20 1.7E-24 136.8 10.9 119 45-174 1-126 (169)
105 smart00177 ARF ARF-like small 99.8 1.1E-19 2.4E-24 137.0 11.6 108 43-160 13-128 (175)
106 cd04161 Arl2l1_Arl13_like Arl2 99.8 2.5E-20 5.5E-25 139.4 7.6 109 45-162 1-116 (167)
107 cd00154 Rab Rab family. Rab G 99.8 7.3E-19 1.6E-23 128.0 12.3 126 44-176 1-135 (159)
108 cd04154 Arl2 Arl2 subfamily. 99.8 6.9E-19 1.5E-23 132.0 11.7 121 42-173 13-140 (173)
109 PTZ00133 ADP-ribosylation fact 99.8 5.7E-19 1.2E-23 134.1 11.3 114 43-168 17-138 (182)
110 cd04139 RalA_RalB RalA/RalB su 99.8 1E-18 2.2E-23 128.8 12.1 126 44-177 1-136 (164)
111 cd04152 Arl4_Arl7 Arl4/Arl7 su 99.8 1.6E-18 3.4E-23 131.6 11.9 123 43-173 3-134 (183)
112 cd00876 Ras Ras family. The R 99.8 1.6E-18 3.4E-23 127.2 11.3 125 45-177 1-135 (160)
113 cd04147 Ras_dva Ras-dva subfam 99.8 1.8E-18 3.8E-23 132.9 11.3 122 45-173 1-132 (198)
114 cd01893 Miro1 Miro1 subfamily. 99.8 3E-18 6.4E-23 127.8 11.1 111 44-164 1-121 (166)
115 cd00157 Rho Rho (Ras homology) 99.8 3.2E-18 6.9E-23 127.3 11.1 125 44-177 1-146 (171)
116 COG1100 GTPase SAR1 and relate 99.8 6.3E-18 1.4E-22 131.0 12.2 113 43-162 5-127 (219)
117 cd04157 Arl6 Arl6 subfamily. 99.8 5.6E-18 1.2E-22 124.9 10.8 108 45-161 1-119 (162)
118 cd04137 RheB Rheb (Ras Homolog 99.8 7.4E-18 1.6E-22 126.9 11.6 125 44-176 2-136 (180)
119 KOG0096|consensus 99.7 4.3E-18 9.3E-23 127.5 8.1 119 34-160 1-128 (216)
120 KOG4423|consensus 99.7 3.4E-20 7.4E-25 138.5 -5.0 151 20-176 5-166 (229)
121 cd00879 Sar1 Sar1 subfamily. 99.7 3.9E-17 8.4E-22 124.1 11.2 122 42-174 18-146 (190)
122 cd04153 Arl5_Arl8 Arl5/Arl8 su 99.7 5.5E-17 1.2E-21 122.0 11.5 114 43-168 15-136 (174)
123 smart00178 SAR Sar1p-like memb 99.7 5.6E-17 1.2E-21 123.2 11.1 120 42-172 16-142 (184)
124 cd04156 ARLTS1 ARLTS1 subfamil 99.7 8.2E-17 1.8E-21 118.6 10.6 108 45-160 1-115 (160)
125 cd00878 Arf_Arl Arf (ADP-ribos 99.7 9.6E-17 2.1E-21 118.2 10.8 109 45-162 1-116 (158)
126 cd04151 Arl1 Arl1 subfamily. 99.7 1.5E-16 3.2E-21 117.5 11.3 107 45-160 1-114 (158)
127 cd04160 Arfrp1 Arfrp1 subfamil 99.7 1E-16 2.3E-21 118.9 10.3 119 45-174 1-133 (167)
128 PF08477 Miro: Miro-like prote 99.7 6.4E-17 1.4E-21 113.9 8.6 105 45-157 1-119 (119)
129 KOG1673|consensus 99.7 1.7E-16 3.7E-21 115.7 8.9 110 42-159 19-137 (205)
130 KOG0070|consensus 99.7 1.6E-15 3.5E-20 113.4 13.4 120 42-171 16-141 (181)
131 PF00025 Arf: ADP-ribosylation 99.7 9.4E-16 2E-20 115.8 10.9 122 41-172 12-139 (175)
132 KOG0073|consensus 99.7 1.4E-15 3E-20 111.6 10.9 119 41-170 14-139 (185)
133 KOG3883|consensus 99.7 9E-16 1.9E-20 111.6 9.4 128 43-176 9-148 (198)
134 cd04159 Arl10_like Arl10-like 99.6 2.6E-15 5.5E-20 109.4 9.4 108 46-162 2-117 (159)
135 KOG0071|consensus 99.6 1.4E-14 3.1E-19 104.0 10.6 120 43-172 17-142 (180)
136 cd04155 Arl3 Arl3 subfamily. 99.6 1.9E-14 4.1E-19 107.4 11.2 109 43-160 14-129 (173)
137 TIGR02528 EutP ethanolamine ut 99.6 4.5E-15 9.7E-20 107.6 6.8 108 45-177 2-118 (142)
138 cd01890 LepA LepA subfamily. 99.6 3.1E-14 6.7E-19 106.8 9.9 118 45-175 2-146 (179)
139 TIGR00231 small_GTP small GTP- 99.5 1.2E-13 2.5E-18 99.9 10.6 122 43-172 1-133 (161)
140 cd04171 SelB SelB subfamily. 99.5 1.6E-13 3.5E-18 100.9 9.2 104 46-161 3-119 (164)
141 cd04105 SR_beta Signal recogni 99.5 4.7E-13 1E-17 103.5 10.7 109 45-160 2-123 (203)
142 cd01891 TypA_BipA TypA (tyrosi 99.5 1.7E-13 3.8E-18 104.7 8.0 119 45-173 4-145 (194)
143 KOG0075|consensus 99.5 7.7E-13 1.7E-17 95.8 10.6 108 44-160 21-136 (186)
144 cd01898 Obg Obg subfamily. Th 99.5 4E-13 8.7E-18 99.7 8.9 121 46-174 3-141 (170)
145 cd01878 HflX HflX subfamily. 99.4 1.1E-12 2.4E-17 100.8 8.5 111 42-162 40-169 (204)
146 cd01897 NOG NOG1 is a nucleola 99.4 1.7E-12 3.7E-17 96.2 9.1 110 45-165 2-132 (168)
147 PRK04213 GTP-binding protein; 99.4 3.4E-13 7.5E-18 103.3 5.3 123 42-176 8-157 (201)
148 TIGR00450 mnmE_trmE_thdF tRNA 99.4 3.2E-12 6.9E-17 109.4 9.9 107 41-160 201-324 (442)
149 smart00010 small_GTPase Small 99.3 4.6E-12 1E-16 89.1 7.5 101 44-176 1-107 (124)
150 TIGR03156 GTP_HflX GTP-binding 99.3 6.5E-12 1.4E-16 104.7 8.7 111 42-161 188-316 (351)
151 cd01879 FeoB Ferrous iron tran 99.3 8.5E-12 1.8E-16 91.2 8.4 115 48-176 2-130 (158)
152 cd00882 Ras_like_GTPase Ras-li 99.3 2.1E-11 4.5E-16 86.8 10.1 109 48-164 2-120 (157)
153 cd01887 IF2_eIF5B IF2/eIF5B (i 99.3 3E-11 6.4E-16 89.3 9.0 102 46-160 3-116 (168)
154 PRK03003 GTP-binding protein D 99.3 2.8E-11 6E-16 104.6 9.5 107 43-160 38-160 (472)
155 KOG0076|consensus 99.2 1.1E-11 2.3E-16 92.1 5.5 118 43-171 17-149 (197)
156 KOG0074|consensus 99.2 3E-11 6.5E-16 87.1 7.5 111 41-160 15-133 (185)
157 KOG1707|consensus 99.2 2.8E-11 6E-16 104.2 8.5 116 42-167 8-136 (625)
158 PRK03003 GTP-binding protein D 99.2 3.3E-11 7.2E-16 104.1 9.1 108 42-160 210-336 (472)
159 PRK12299 obgE GTPase CgtA; Rev 99.2 6.5E-11 1.4E-15 98.1 10.3 122 48-175 164-300 (335)
160 PRK05291 trmE tRNA modificatio 99.2 2.4E-11 5.2E-16 104.4 7.9 107 43-163 215-338 (449)
161 KOG0072|consensus 99.2 1.5E-10 3.3E-15 83.7 10.1 110 42-160 17-133 (182)
162 cd04164 trmE TrmE (MnmE, ThdF, 99.2 1.2E-10 2.5E-15 84.8 8.5 105 44-161 2-122 (157)
163 TIGR01393 lepA GTP-binding pro 99.2 1.4E-10 2.9E-15 102.7 10.2 105 45-160 5-136 (595)
164 PRK15494 era GTPase Era; Provi 99.2 1.7E-10 3.7E-15 95.8 10.2 117 42-175 51-186 (339)
165 PRK15467 ethanolamine utilizat 99.2 1.1E-10 2.3E-15 86.8 7.9 108 45-177 3-119 (158)
166 cd01881 Obg_like The Obg-like 99.2 9.4E-11 2E-15 87.2 7.2 118 48-167 2-141 (176)
167 PRK11058 GTPase HflX; Provisio 99.2 1.8E-10 3.9E-15 98.3 9.3 108 44-160 198-323 (426)
168 TIGR02729 Obg_CgtA Obg family 99.1 3E-10 6.4E-15 94.0 9.2 123 45-175 159-301 (329)
169 cd01895 EngA2 EngA2 subfamily. 99.1 4.9E-10 1.1E-14 82.6 8.9 115 43-168 2-135 (174)
170 TIGR00487 IF-2 translation ini 99.1 8.7E-10 1.9E-14 97.4 10.8 105 42-160 86-201 (587)
171 TIGR00475 selB selenocysteine- 99.1 5.3E-10 1.1E-14 98.8 9.4 117 46-175 3-134 (581)
172 TIGR03598 GTPase_YsxC ribosome 99.1 6.7E-10 1.5E-14 83.8 8.6 109 41-160 16-143 (179)
173 TIGR00437 feoB ferrous iron tr 99.1 5.1E-10 1.1E-14 99.1 8.6 115 49-177 1-129 (591)
174 PRK00093 GTP-binding protein D 99.1 1E-09 2.2E-14 93.7 10.3 104 44-160 2-123 (435)
175 COG2229 Predicted GTPase [Gene 99.0 5.1E-09 1.1E-13 78.6 11.5 119 42-173 9-146 (187)
176 TIGR00157 ribosome small subun 99.0 4.8E-10 1E-14 89.2 6.2 71 95-174 24-95 (245)
177 TIGR03594 GTPase_EngA ribosome 99.0 1.8E-09 4E-14 91.9 10.1 106 42-159 171-296 (429)
178 cd01894 EngA1 EngA1 subfamily. 99.0 7.8E-10 1.7E-14 80.5 6.5 103 47-161 2-120 (157)
179 cd00881 GTP_translation_factor 99.0 1.8E-09 4E-14 81.0 8.2 72 78-160 55-128 (189)
180 TIGR00483 EF-1_alpha translati 99.0 1.5E-09 3.3E-14 92.7 8.3 98 70-176 70-175 (426)
181 PRK00454 engB GTP-binding prot 99.0 2.3E-09 5E-14 81.4 8.2 110 39-160 20-149 (196)
182 cd04167 Snu114p Snu114p subfam 99.0 2.6E-09 5.6E-14 82.9 8.2 61 89-159 76-136 (213)
183 PRK05306 infB translation init 98.9 2.8E-09 6E-14 96.7 8.3 105 42-160 289-403 (787)
184 cd01889 SelB_euk SelB subfamil 98.9 4E-09 8.7E-14 80.4 7.9 107 44-160 1-134 (192)
185 TIGR00491 aIF-2 translation in 98.9 4E-09 8.6E-14 93.2 8.0 59 89-160 74-135 (590)
186 PRK09518 bifunctional cytidyla 98.9 5.2E-09 1.1E-13 94.7 8.7 106 43-160 450-575 (712)
187 TIGR03594 GTPase_EngA ribosome 98.9 7.1E-09 1.5E-13 88.3 9.1 105 45-162 1-123 (429)
188 TIGR00436 era GTP-binding prot 98.9 8.3E-09 1.8E-13 83.0 8.9 103 45-160 2-121 (270)
189 CHL00189 infB translation init 98.9 5.6E-09 1.2E-13 94.1 8.5 106 42-160 243-361 (742)
190 cd04163 Era Era subfamily. Er 98.9 1.3E-08 2.9E-13 74.1 8.1 118 43-173 3-138 (168)
191 PRK12297 obgE GTPase CgtA; Rev 98.9 2.8E-08 6.1E-13 84.7 11.0 121 45-175 160-299 (424)
192 KOG0077|consensus 98.8 9.6E-09 2.1E-13 76.1 6.3 119 41-170 18-143 (193)
193 cd01850 CDC_Septin CDC/Septin. 98.8 1.2E-08 2.6E-13 82.5 7.2 123 42-176 3-175 (276)
194 PRK04004 translation initiatio 98.8 1.3E-08 2.9E-13 90.0 7.9 101 45-159 8-136 (586)
195 PRK09518 bifunctional cytidyla 98.8 2.4E-08 5.1E-13 90.4 9.3 106 43-160 275-397 (712)
196 PRK12317 elongation factor 1-a 98.8 1.8E-08 3.8E-13 86.1 8.0 89 78-175 77-172 (425)
197 cd01885 EF2 EF2 (for archaea a 98.8 2.2E-08 4.7E-13 78.6 7.3 73 89-171 78-151 (222)
198 cd04168 TetM_like Tet(M)-like 98.8 2.9E-08 6.4E-13 78.5 8.1 72 78-160 57-130 (237)
199 PRK05433 GTP-binding protein L 98.8 3E-08 6.6E-13 88.0 8.7 62 89-160 79-140 (600)
200 PF04670 Gtr1_RagA: Gtr1/RagA 98.8 4.6E-08 9.9E-13 77.1 8.8 106 45-159 1-124 (232)
201 PRK09554 feoB ferrous iron tra 98.7 8.9E-08 1.9E-12 87.2 11.1 120 43-177 3-142 (772)
202 PRK00093 GTP-binding protein D 98.7 1E-07 2.2E-12 81.5 10.8 108 42-160 172-298 (435)
203 cd01896 DRG The developmentall 98.7 1.3E-07 2.8E-12 74.7 10.5 83 45-130 2-101 (233)
204 cd01876 YihA_EngB The YihA (En 98.7 3.4E-08 7.3E-13 72.2 6.3 101 46-159 2-123 (170)
205 cd04169 RF3 RF3 subfamily. Pe 98.7 1E-07 2.2E-12 76.8 9.1 71 79-160 65-137 (267)
206 cd04166 CysN_ATPS CysN_ATPS su 98.7 2.4E-07 5.2E-12 71.7 10.5 73 78-160 70-144 (208)
207 PRK12296 obgE GTPase CgtA; Rev 98.7 1E-07 2.2E-12 82.6 8.3 117 44-163 160-301 (500)
208 PRK13351 elongation factor G; 98.6 1.1E-07 2.3E-12 85.9 8.5 105 43-160 8-139 (687)
209 KOG3886|consensus 98.6 9.2E-08 2E-12 74.6 6.6 119 43-171 4-143 (295)
210 PRK10218 GTP-binding protein; 98.6 1.7E-07 3.7E-12 83.2 9.3 109 43-161 5-135 (607)
211 PF09439 SRPRB: Signal recogni 98.6 1.3E-07 2.8E-12 71.8 7.1 108 46-160 6-126 (181)
212 PRK00089 era GTPase Era; Revie 98.6 1.7E-07 3.8E-12 76.0 8.3 117 45-173 7-140 (292)
213 PRK10512 selenocysteinyl-tRNA- 98.6 2.7E-07 5.8E-12 82.2 10.0 99 48-160 6-118 (614)
214 cd00880 Era_like Era (E. coli 98.6 1.5E-07 3.3E-12 67.5 6.9 103 48-161 2-119 (163)
215 TIGR01394 TypA_BipA GTP-bindin 98.6 2.2E-07 4.9E-12 82.4 9.0 73 79-162 58-132 (594)
216 PRK12298 obgE GTPase CgtA; Rev 98.5 6.5E-07 1.4E-11 75.8 9.8 120 48-174 165-302 (390)
217 PRK04000 translation initiatio 98.5 1.1E-06 2.3E-11 75.0 9.8 74 89-174 90-169 (411)
218 cd01888 eIF2_gamma eIF2-gamma 98.5 5.2E-07 1.1E-11 69.5 7.0 60 89-160 88-151 (203)
219 cd04170 EF-G_bact Elongation f 98.4 1.6E-06 3.5E-11 69.6 9.3 72 78-160 57-130 (268)
220 cd04104 p47_IIGP_like p47 (47- 98.4 6.8E-07 1.5E-11 68.6 6.7 103 44-159 2-120 (197)
221 TIGR03680 eif2g_arch translati 98.4 5.7E-07 1.2E-11 76.5 6.7 60 89-160 85-148 (406)
222 PRK00741 prfC peptide chain re 98.4 8.3E-07 1.8E-11 77.8 7.8 71 79-160 73-145 (526)
223 cd00066 G-alpha G protein alph 98.4 1E-06 2.2E-11 72.6 7.7 100 55-160 122-242 (317)
224 TIGR00485 EF-Tu translation el 98.4 2.4E-06 5.2E-11 72.4 9.7 79 85-175 74-160 (394)
225 TIGR00503 prfC peptide chain r 98.4 2.5E-06 5.4E-11 74.9 9.5 71 79-160 74-146 (527)
226 smart00275 G_alpha G protein a 98.4 2.4E-06 5.2E-11 71.1 8.8 84 69-160 170-265 (342)
227 cd01883 EF1_alpha Eukaryotic e 98.3 2.8E-06 6E-11 66.3 7.1 74 77-160 69-151 (219)
228 PF02421 FeoB_N: Ferrous iron 98.2 1.5E-06 3.2E-11 64.5 4.4 118 44-175 1-133 (156)
229 TIGR00490 aEF-2 translation el 98.2 2.7E-06 5.9E-11 77.2 6.6 109 41-159 17-151 (720)
230 TIGR00484 EF-G translation elo 98.2 7.4E-06 1.6E-10 74.1 8.2 73 77-160 67-141 (689)
231 PRK14845 translation initiatio 98.1 5.2E-06 1.1E-10 77.6 7.0 59 89-160 531-592 (1049)
232 PF01926 MMR_HSR1: 50S ribosom 98.1 2.3E-05 5.1E-10 54.6 8.5 94 45-155 1-116 (116)
233 cd01886 EF-G Elongation factor 98.1 1.9E-05 4.1E-10 63.7 8.3 72 78-160 57-130 (270)
234 PLN00043 elongation factor 1-a 98.1 2.8E-05 6E-10 67.0 9.4 86 85-177 84-182 (447)
235 PF00009 GTP_EFTU: Elongation 98.1 2.9E-05 6.2E-10 58.9 8.5 65 85-159 69-135 (188)
236 PRK12736 elongation factor Tu; 98.0 3.4E-05 7.3E-10 65.5 9.4 67 85-160 74-142 (394)
237 KOG0090|consensus 98.0 0.00019 4E-09 55.6 12.3 109 45-160 40-159 (238)
238 PRK12735 elongation factor Tu; 98.0 4.8E-05 1E-09 64.6 9.9 67 85-160 74-142 (396)
239 PLN03126 Elongation factor Tu; 97.9 8.5E-05 1.8E-09 64.6 10.1 109 42-160 80-211 (478)
240 PRK12740 elongation factor G; 97.9 7.9E-05 1.7E-09 67.2 10.1 73 77-160 52-126 (668)
241 TIGR03597 GTPase_YqeH ribosome 97.9 1.9E-05 4.2E-10 66.2 5.5 66 94-172 50-115 (360)
242 TIGR02034 CysN sulfate adenyly 97.9 9.4E-05 2E-09 63.0 9.2 73 78-160 73-147 (406)
243 cd01884 EF_Tu EF-Tu subfamily. 97.8 0.00015 3.3E-09 55.7 9.2 66 85-159 64-131 (195)
244 PRK05124 cysN sulfate adenylyl 97.8 0.00015 3.3E-09 62.9 10.2 73 78-160 100-174 (474)
245 KOG1707|consensus 97.8 7.4E-05 1.6E-09 65.2 7.8 124 43-177 425-557 (625)
246 COG0486 ThdF Predicted GTPase 97.8 7.7E-05 1.7E-09 63.6 7.6 107 43-163 217-341 (454)
247 cd04165 GTPBP1_like GTPBP1-lik 97.7 0.00058 1.3E-08 53.6 10.8 66 85-160 83-152 (224)
248 cd01855 YqeH YqeH. YqeH is an 97.7 7.3E-05 1.6E-09 56.8 5.4 64 97-173 24-87 (190)
249 PRK12289 GTPase RsgA; Reviewed 97.7 0.00016 3.5E-09 60.4 7.2 56 96-160 78-134 (352)
250 TIGR00991 3a0901s02IAP34 GTP-b 97.6 0.00067 1.5E-08 55.7 10.4 119 41-167 36-174 (313)
251 PRK05506 bifunctional sulfate 97.6 0.00041 8.9E-09 62.3 9.1 72 79-160 98-171 (632)
252 PLN03127 Elongation factor Tu; 97.6 0.00026 5.6E-09 61.1 7.5 109 42-160 60-191 (447)
253 PF10662 PduV-EutP: Ethanolami 97.6 0.00042 9.2E-09 50.6 7.3 106 45-175 3-117 (143)
254 PRK12739 elongation factor G; 97.5 0.00094 2E-08 60.6 10.3 72 78-160 66-139 (691)
255 CHL00071 tufA elongation facto 97.4 0.0025 5.3E-08 54.4 11.8 109 42-160 11-142 (409)
256 PRK00049 elongation factor Tu; 97.4 0.0013 2.8E-08 55.9 9.8 67 85-160 74-142 (396)
257 PRK00098 GTPase RsgA; Reviewed 97.4 0.0002 4.4E-09 58.5 4.5 48 104-160 77-125 (298)
258 COG1160 Predicted GTPases [Gen 97.4 0.00044 9.5E-09 59.0 6.5 102 45-159 5-125 (444)
259 cd01854 YjeQ_engC YjeQ/EngC. 97.4 0.00024 5.2E-09 57.8 4.3 52 101-161 72-124 (287)
260 cd01899 Ygr210 Ygr210 subfamil 97.2 0.00062 1.4E-08 56.2 5.6 72 47-119 3-111 (318)
261 PRK12288 GTPase RsgA; Reviewed 97.1 0.00076 1.6E-08 56.4 5.0 46 106-160 119-164 (347)
262 cd01853 Toc34_like Toc34-like 97.1 0.0046 1E-07 49.3 9.2 115 38-160 26-163 (249)
263 COG1160 Predicted GTPases [Gen 97.1 0.0058 1.3E-07 52.3 10.1 121 42-175 177-318 (444)
264 KOG1191|consensus 97.1 0.00086 1.9E-08 57.7 4.8 119 40-161 265-404 (531)
265 PRK00007 elongation factor G; 97.0 0.0066 1.4E-07 55.2 10.5 72 78-160 68-141 (693)
266 cd01857 HSR1_MMR1 HSR1/MMR1. 97.0 0.0014 3E-08 47.4 4.9 48 103-160 7-56 (141)
267 cd01852 AIG1 AIG1 (avrRpt2-ind 97.0 0.006 1.3E-07 46.5 8.6 105 45-158 2-128 (196)
268 PRK13768 GTPase; Provisional 97.0 0.0013 2.9E-08 52.5 4.9 66 89-161 102-177 (253)
269 COG1084 Predicted GTPase [Gene 96.9 0.0074 1.6E-07 49.7 8.8 113 43-166 168-300 (346)
270 KOG4273|consensus 96.9 0.0024 5.3E-08 50.9 5.6 62 106-175 77-138 (418)
271 PTZ00141 elongation factor 1- 96.8 0.01 2.2E-07 51.3 9.7 72 78-158 78-157 (446)
272 KOG0705|consensus 96.8 0.0035 7.5E-08 54.9 6.6 119 43-174 30-159 (749)
273 cd01859 MJ1464 MJ1464. This f 96.7 0.0018 4E-08 47.4 3.5 53 98-160 3-55 (156)
274 COG1159 Era GTPase [General fu 96.6 0.018 3.8E-07 46.9 8.9 102 47-162 11-130 (298)
275 PRK09866 hypothetical protein; 96.6 0.019 4.2E-07 51.6 9.7 77 89-173 235-316 (741)
276 PRK09602 translation-associate 96.6 0.0069 1.5E-07 51.6 6.6 30 89-118 77-113 (396)
277 COG0218 Predicted GTPase [Gene 96.3 0.022 4.8E-07 43.8 7.3 107 43-160 24-149 (200)
278 KOG1423|consensus 96.2 0.02 4.4E-07 47.0 7.0 121 28-160 56-199 (379)
279 PF00503 G-alpha: G-protein al 96.1 0.018 4E-07 48.7 6.6 85 70-159 222-316 (389)
280 COG0532 InfB Translation initi 96.1 0.042 9.1E-07 47.9 8.7 59 89-160 60-121 (509)
281 PRK13796 GTPase YqeH; Provisio 96.1 0.017 3.8E-07 48.6 6.3 63 96-172 58-121 (365)
282 cd01882 BMS1 Bms1. Bms1 is an 96.1 0.039 8.4E-07 43.2 7.9 102 43-160 39-147 (225)
283 KOG1145|consensus 96.1 0.026 5.7E-07 49.6 7.4 68 80-160 195-267 (683)
284 PLN00116 translation elongatio 96.1 0.02 4.4E-07 53.3 7.2 61 89-159 103-163 (843)
285 PF06858 NOG1: Nucleolar GTP-b 96.0 0.036 7.8E-07 34.1 5.9 44 107-157 13-58 (58)
286 KOG0082|consensus 96.0 0.049 1.1E-06 45.6 8.4 98 58-160 159-276 (354)
287 cd01858 NGP_1 NGP-1. Autoanti 96.0 0.021 4.6E-07 41.8 5.7 47 104-160 5-53 (157)
288 TIGR00993 3a0901s04IAP86 chlor 95.8 0.16 3.4E-06 46.1 11.2 115 38-159 113-249 (763)
289 PTZ00416 elongation factor 2; 95.8 0.037 8E-07 51.5 7.7 61 89-159 97-157 (836)
290 KOG1144|consensus 95.6 0.036 7.8E-07 50.4 6.6 65 80-158 537-604 (1064)
291 PTZ00327 eukaryotic translatio 95.6 0.035 7.5E-07 48.2 6.2 64 89-160 122-185 (460)
292 PF04548 AIG1: AIG1 family; I 95.6 0.092 2E-06 40.6 8.1 92 44-140 1-114 (212)
293 PRK07560 elongation factor EF- 95.5 0.041 8.9E-07 50.5 6.9 61 89-159 92-152 (731)
294 cd01849 YlqF_related_GTPase Yl 95.5 0.04 8.7E-07 40.3 5.6 43 109-160 1-43 (155)
295 KOG0462|consensus 95.5 0.078 1.7E-06 46.7 7.9 63 89-161 130-192 (650)
296 cd01859 MJ1464 MJ1464. This f 95.4 0.018 3.9E-07 42.0 3.5 50 43-93 101-155 (156)
297 COG0536 Obg Predicted GTPase [ 95.4 0.17 3.7E-06 42.2 9.2 67 89-159 212-288 (369)
298 COG2262 HflX GTPases [General 95.3 0.14 3.1E-06 43.4 8.9 108 44-159 193-317 (411)
299 TIGR03348 VI_IcmF type VI secr 95.2 0.074 1.6E-06 51.3 7.7 47 107-159 201-256 (1169)
300 PF05783 DLIC: Dynein light in 95.1 0.067 1.5E-06 46.6 6.6 90 44-135 26-129 (472)
301 PF03029 ATP_bind_1: Conserved 95.1 0.037 8E-07 43.9 4.6 67 89-161 96-171 (238)
302 KOG1489|consensus 94.5 0.11 2.4E-06 42.9 5.9 67 89-159 249-325 (366)
303 COG0370 FeoB Fe2+ transport sy 94.5 0.15 3.4E-06 45.8 7.3 109 44-165 4-127 (653)
304 KOG0468|consensus 94.4 0.069 1.5E-06 48.1 4.8 60 89-158 202-261 (971)
305 cd01857 HSR1_MMR1 HSR1/MMR1. 94.1 0.05 1.1E-06 39.2 2.9 49 45-94 85-138 (141)
306 COG3596 Predicted GTPase [Gene 94.1 0.06 1.3E-06 43.6 3.5 109 43-160 39-162 (296)
307 cd01856 YlqF YlqF. Proteins o 93.9 0.049 1.1E-06 40.5 2.6 53 96-160 8-60 (171)
308 PF05049 IIGP: Interferon-indu 93.8 0.13 2.8E-06 43.5 5.2 104 42-158 34-153 (376)
309 COG0480 FusA Translation elong 93.8 0.23 5E-06 45.3 7.1 65 86-160 76-142 (697)
310 KOG3905|consensus 93.6 0.31 6.7E-06 40.6 6.8 91 44-136 53-157 (473)
311 cd03110 Fer4_NifH_child This p 93.3 0.82 1.8E-05 34.0 8.5 74 89-177 98-171 (179)
312 COG0481 LepA Membrane GTPase L 93.2 0.54 1.2E-05 41.1 8.0 66 85-160 73-142 (603)
313 COG1217 TypA Predicted membran 93.1 0.25 5.5E-06 42.9 5.9 81 71-162 52-136 (603)
314 PF00735 Septin: Septin; Inte 93.0 0.77 1.7E-05 37.3 8.4 52 107-173 113-164 (281)
315 cd04178 Nucleostemin_like Nucl 92.7 0.29 6.3E-06 36.8 5.2 44 109-160 1-44 (172)
316 COG2895 CysN GTPases - Sulfate 92.7 0.64 1.4E-05 39.1 7.4 79 89-176 91-173 (431)
317 KOG0467|consensus 92.1 0.38 8.2E-06 44.0 5.9 100 54-171 42-150 (887)
318 COG4108 PrfC Peptide chain rel 92.1 0.55 1.2E-05 40.6 6.5 79 71-160 67-147 (528)
319 KOG3887|consensus 91.9 0.51 1.1E-05 37.8 5.7 65 89-158 80-147 (347)
320 COG5256 TEF1 Translation elong 91.8 1.5 3.2E-05 37.5 8.8 68 89-163 90-162 (428)
321 COG4917 EutP Ethanolamine util 91.4 0.28 6.1E-06 35.2 3.5 94 45-160 3-104 (148)
322 cd01856 YlqF YlqF. Proteins o 91.3 0.28 6.2E-06 36.4 3.7 51 43-94 115-170 (171)
323 PF00350 Dynamin_N: Dynamin fa 90.9 0.45 9.8E-06 34.7 4.5 59 89-156 106-168 (168)
324 TIGR03596 GTPase_YlqF ribosome 90.7 0.51 1.1E-05 38.0 4.9 48 101-160 15-62 (276)
325 PRK01889 GTPase RsgA; Reviewed 90.2 0.63 1.4E-05 39.1 5.2 48 104-160 109-156 (356)
326 COG0050 TufB GTPases - transla 89.6 1.7 3.7E-05 35.9 6.9 71 79-162 69-144 (394)
327 PRK09563 rbgA GTPase YlqF; Rev 89.4 0.41 8.9E-06 38.9 3.4 48 101-160 18-65 (287)
328 cd02038 FleN-like FleN is a me 88.3 2.3 5E-05 30.4 6.4 60 89-158 50-109 (139)
329 COG1163 DRG Predicted GTPase [ 88.2 1.3 2.8E-05 36.9 5.4 87 44-132 64-166 (365)
330 COG5257 GCD11 Translation init 88.0 1.9 4.2E-05 36.0 6.3 75 89-174 91-170 (415)
331 TIGR03596 GTPase_YlqF ribosome 87.0 1.3 2.7E-05 35.8 4.8 51 43-94 118-173 (276)
332 smart00010 small_GTPase Small 86.9 0.0041 8.9E-08 43.0 -8.6 56 112-174 36-97 (124)
333 KOG1954|consensus 86.9 1.3 2.8E-05 37.6 4.8 55 97-160 171-225 (532)
334 PRK09563 rbgA GTPase YlqF; Rev 86.8 0.91 2E-05 36.8 3.9 53 42-95 120-177 (287)
335 KOG3929|consensus 86.1 3.1 6.7E-05 33.8 6.4 79 43-123 45-135 (363)
336 PF11111 CENP-M: Centromere pr 85.7 4.2 9.1E-05 30.7 6.6 66 106-178 63-128 (176)
337 PTZ00258 GTP-binding protein; 85.1 3.9 8.4E-05 34.9 6.9 30 89-118 90-126 (390)
338 cd01858 NGP_1 NGP-1. Autoanti 84.3 1.5 3.3E-05 31.9 3.7 50 43-93 102-156 (157)
339 KOG1490|consensus 84.0 6.1 0.00013 34.9 7.6 54 108-168 248-303 (620)
340 smart00053 DYNc Dynamin, GTPas 83.9 7 0.00015 31.0 7.6 63 89-160 130-206 (240)
341 KOG0458|consensus 83.4 9.5 0.0002 34.2 8.7 63 89-160 260-329 (603)
342 KOG1424|consensus 83.3 2.5 5.3E-05 37.3 5.0 46 105-160 172-219 (562)
343 COG3523 IcmF Type VI protein s 82.6 4.7 0.0001 39.1 7.0 49 106-160 213-270 (1188)
344 cd04178 Nucleostemin_like Nucl 82.1 1.7 3.6E-05 32.6 3.2 50 43-93 117-171 (172)
345 COG1161 Predicted GTPases [Gen 81.2 1.7 3.6E-05 36.0 3.2 60 89-160 16-75 (322)
346 TIGR00101 ureG urease accessor 79.4 3.5 7.5E-05 31.6 4.3 39 108-160 113-151 (199)
347 COG3640 CooC CO dehydrogenase 77.3 7.7 0.00017 30.9 5.6 56 92-159 143-198 (255)
348 COG5400 Uncharacterized protei 76.9 6.6 0.00014 29.5 4.8 59 46-121 85-145 (205)
349 KOG0099|consensus 75.6 11 0.00024 30.7 6.2 79 79-160 196-283 (379)
350 KOG0464|consensus 75.3 1.4 3.1E-05 38.0 1.1 70 78-158 95-166 (753)
351 cd03111 CpaE_like This protein 74.5 17 0.00036 24.6 6.2 58 89-155 48-106 (106)
352 PRK09601 GTP-binding protein Y 73.6 17 0.00037 30.8 7.1 30 89-118 71-107 (364)
353 PF14331 ImcF-related_N: ImcF- 73.4 7.1 0.00015 31.4 4.7 47 107-159 25-82 (266)
354 COG4963 CpaE Flp pilus assembl 73.1 12 0.00026 31.7 6.0 61 89-158 223-283 (366)
355 KOG1547|consensus 72.9 49 0.0011 26.8 10.0 13 42-54 45-58 (336)
356 cd01851 GBP Guanylate-binding 71.7 45 0.00098 25.9 8.9 90 42-131 5-116 (224)
357 cd01900 YchF YchF subfamily. 71.7 13 0.00029 30.1 5.9 29 89-117 67-102 (274)
358 KOG0460|consensus 69.7 16 0.00035 30.9 6.0 76 89-176 122-203 (449)
359 cd02036 MinD Bacterial cell di 69.7 39 0.00086 24.4 8.2 60 89-159 68-127 (179)
360 COG5019 CDC3 Septin family pro 68.7 67 0.0015 27.3 9.5 54 42-96 22-94 (373)
361 COG1161 Predicted GTPases [Gen 68.1 5.3 0.00012 33.1 3.0 51 43-94 132-187 (322)
362 KOG0447|consensus 68.1 31 0.00068 31.2 7.7 70 96-174 437-507 (980)
363 PHA02518 ParA-like protein; Pr 66.3 32 0.0007 25.7 6.9 61 89-158 82-145 (211)
364 KOG2655|consensus 65.6 52 0.0011 27.9 8.3 13 42-54 20-33 (366)
365 TIGR02836 spore_IV_A stage IV 64.0 1E+02 0.0022 27.1 9.8 46 104-158 140-192 (492)
366 COG1162 Predicted GTPases [Gen 60.9 32 0.00069 28.4 6.1 52 100-160 72-124 (301)
367 cd02067 B12-binding B12 bindin 60.7 21 0.00045 24.5 4.5 40 109-154 50-89 (119)
368 TIGR00157 ribosome small subun 60.5 4.4 9.5E-05 32.1 1.1 14 47-60 125-141 (245)
369 cd01849 YlqF_related_GTPase Yl 59.7 11 0.00023 27.3 2.9 18 43-60 100-121 (155)
370 PRK12289 GTPase RsgA; Reviewed 58.6 9.2 0.0002 32.2 2.7 13 48-60 178-193 (352)
371 KOG2484|consensus 58.4 22 0.00047 30.6 4.8 49 102-160 141-191 (435)
372 PF03709 OKR_DC_1_N: Orn/Lys/A 56.0 50 0.0011 22.8 5.8 43 106-156 35-77 (115)
373 TIGR00073 hypB hydrogenase acc 52.3 12 0.00025 28.6 2.2 27 148-174 150-176 (207)
374 KOG1532|consensus 51.4 51 0.0011 27.2 5.7 14 147-160 182-195 (366)
375 KOG0448|consensus 50.8 70 0.0015 29.5 7.0 62 89-160 211-275 (749)
376 COG3276 SelB Selenocysteine-sp 49.3 1.3E+02 0.0029 26.2 8.2 76 70-160 37-117 (447)
377 KOG1143|consensus 49.0 99 0.0022 26.8 7.2 60 89-160 254-317 (591)
378 KOG1486|consensus 48.3 96 0.0021 25.4 6.7 89 43-133 62-166 (364)
379 TIGR00750 lao LAO/AO transport 48.2 42 0.0009 27.3 5.0 55 89-160 132-186 (300)
380 cd02071 MM_CoA_mut_B12_BD meth 48.1 51 0.0011 22.9 4.8 42 106-155 49-90 (122)
381 PF05894 Podovirus_Gp16: Podov 47.6 50 0.0011 27.5 5.2 31 121-158 133-163 (333)
382 cd02117 NifH_like This family 46.8 1.3E+02 0.0027 22.8 8.4 80 89-177 122-202 (212)
383 KOG0469|consensus 46.7 23 0.0005 31.6 3.3 71 89-169 103-174 (842)
384 PRK13660 hypothetical protein; 45.8 1.2E+02 0.0027 23.0 6.8 21 102-122 124-144 (182)
385 KOG3859|consensus 45.7 19 0.00042 29.6 2.5 16 39-54 38-54 (406)
386 PRK12288 GTPase RsgA; Reviewed 44.7 23 0.00051 29.6 3.0 14 47-60 210-226 (347)
387 cd02042 ParA ParA and ParB of 44.6 88 0.0019 20.5 6.0 41 89-132 45-85 (104)
388 COG1419 FlhF Flagellar GTP-bin 43.8 47 0.001 28.6 4.7 59 89-159 287-351 (407)
389 COG4615 PvdE ABC-type sideroph 43.8 13 0.00029 32.2 1.4 76 48-135 355-433 (546)
390 PF08043 Xin: Xin repeat; Int 41.9 18 0.00039 16.2 1.1 12 15-26 4-15 (16)
391 PRK13505 formate--tetrahydrofo 41.3 55 0.0012 29.4 4.8 45 122-177 357-401 (557)
392 cd01854 YjeQ_engC YjeQ/EngC. 40.7 26 0.00055 28.4 2.6 19 78-97 207-226 (287)
393 PF01656 CbiA: CobQ/CobB/MinD/ 39.5 68 0.0015 23.4 4.7 63 89-160 100-162 (195)
394 PHA02763 hypothetical protein; 38.5 61 0.0013 21.6 3.6 21 121-141 65-85 (102)
395 cd07379 MPP_239FB Homo sapiens 38.3 65 0.0014 22.5 4.2 29 106-134 18-46 (135)
396 PF03193 DUF258: Protein of un 37.8 13 0.00029 27.6 0.5 50 47-97 40-100 (161)
397 KOG0465|consensus 36.8 1E+02 0.0022 28.3 5.7 62 89-160 109-170 (721)
398 COG5258 GTPBP1 GTPase [General 36.8 1.8E+02 0.0039 25.3 7.0 62 89-160 206-269 (527)
399 COG1343 CRISPR-associated prot 36.2 1.3E+02 0.0029 20.1 5.6 11 111-121 3-13 (89)
400 PF09827 CRISPR_Cas2: CRISPR a 36.2 40 0.00087 21.3 2.5 23 110-132 3-25 (78)
401 PRK00098 GTPase RsgA; Reviewed 36.2 32 0.00069 28.0 2.5 15 46-60 167-185 (298)
402 TIGR01968 minD_bact septum sit 35.3 2.1E+02 0.0045 22.0 7.1 59 89-158 117-175 (261)
403 COG1010 CobJ Precorrin-3B meth 34.4 1.1E+02 0.0025 24.4 5.1 45 104-154 151-195 (249)
404 cd02037 MRP-like MRP (Multiple 34.0 1.8E+02 0.0039 21.0 8.2 59 89-158 73-133 (169)
405 COG1149 MinD superfamily P-loo 33.1 2.4E+02 0.0052 23.1 6.9 58 103-176 181-238 (284)
406 cd08166 MPP_Cdc1_like_1 unchar 31.9 1.5E+02 0.0033 22.7 5.5 67 107-174 42-109 (195)
407 TIGR03371 cellulose_yhjQ cellu 31.1 2.4E+02 0.0052 21.5 7.6 62 89-159 120-181 (246)
408 PF14784 ECIST_Cterm: C-termin 31.1 1.1E+02 0.0024 21.9 4.2 34 106-139 82-115 (126)
409 cd00009 AAA The AAA+ (ATPases 30.9 53 0.0011 22.1 2.7 9 46-54 22-31 (151)
410 PF12989 DUF3873: Domain of un 30.5 1E+02 0.0023 19.5 3.5 51 85-135 8-59 (69)
411 COG4502 5'(3')-deoxyribonucleo 30.5 96 0.0021 22.9 3.9 47 102-155 78-124 (180)
412 COG0420 SbcD DNA repair exonuc 30.2 97 0.0021 26.0 4.6 47 107-159 40-89 (390)
413 COG3703 ChaC Uncharacterized p 29.8 26 0.00056 26.8 0.9 17 8-26 4-20 (190)
414 TIGR03597 GTPase_YqeH ribosome 29.7 56 0.0012 27.4 3.0 10 45-54 156-166 (360)
415 KOG0961|consensus 29.3 2E+02 0.0042 27.0 6.3 62 78-139 169-241 (1022)
416 KOG2486|consensus 28.9 99 0.0022 25.5 4.1 101 42-159 135-261 (320)
417 PF05621 TniB: Bacterial TniB 28.1 1.4E+02 0.003 24.7 4.9 51 100-155 136-189 (302)
418 KOG0912|consensus 28.0 1.2E+02 0.0025 25.4 4.4 62 112-173 176-255 (375)
419 PF06577 DUF1134: Protein of u 27.9 2.6E+02 0.0056 20.8 6.0 32 79-123 70-102 (160)
420 PF09419 PGP_phosphatase: Mito 26.8 2.7E+02 0.0059 20.8 6.9 64 105-177 36-106 (168)
421 KOG2455|consensus 26.8 54 0.0012 28.7 2.4 35 117-160 388-422 (561)
422 cd02033 BchX Chlorophyllide re 26.6 3.8E+02 0.0082 22.3 7.9 55 108-176 173-230 (329)
423 PRK13796 GTPase YqeH; Provisio 26.1 51 0.0011 27.7 2.2 51 45-95 162-221 (365)
424 KOG2423|consensus 25.2 2E+02 0.0043 25.2 5.4 53 100-160 203-258 (572)
425 TIGR01624 LRP1_Cterm LRP1 C-te 25.0 69 0.0015 18.9 1.9 26 21-46 7-32 (50)
426 CHL00175 minD septum-site dete 24.0 3.6E+02 0.0079 21.2 7.7 59 89-158 132-190 (281)
427 COG3845 ABC-type uncharacteriz 23.9 2E+02 0.0043 25.5 5.3 57 93-157 144-201 (501)
428 cd07388 MPP_Tt1561 Thermus the 23.4 1.8E+02 0.0039 22.7 4.7 45 90-135 12-60 (224)
429 PF12327 FtsZ_C: FtsZ family, 23.4 2.3E+02 0.005 18.8 4.8 49 102-157 30-78 (95)
430 PF06953 ArsD: Arsenical resis 23.2 1.5E+02 0.0033 21.0 3.8 63 105-174 36-99 (123)
431 PRK02261 methylaspartate mutas 23.2 1.9E+02 0.0041 20.7 4.4 40 107-154 54-93 (137)
432 PRK04017 hypothetical protein; 23.1 1.5E+02 0.0032 21.4 3.7 33 120-159 3-35 (132)
433 KOG0461|consensus 23.0 1.9E+02 0.0041 24.8 4.8 29 89-120 75-106 (522)
434 PF00846 Hanta_nucleocap: Hant 21.8 30 0.00066 29.5 0.0 25 8-32 294-318 (428)
435 TIGR01007 eps_fam capsular exo 21.8 3.4E+02 0.0075 20.1 7.1 62 89-160 133-194 (204)
436 PRK13185 chlL protochlorophyll 21.6 4E+02 0.0086 20.8 8.1 63 89-157 123-185 (270)
437 TIGR02370 pyl_corrinoid methyl 21.5 2E+02 0.0044 21.8 4.5 40 109-153 135-174 (197)
438 PRK10818 cell division inhibit 21.1 4.1E+02 0.0088 20.7 7.3 44 89-135 119-162 (270)
439 KOG2052|consensus 20.6 61 0.0013 28.4 1.6 42 90-131 217-258 (513)
440 COG1125 OpuBA ABC-type proline 20.4 87 0.0019 25.6 2.3 25 115-139 163-187 (309)
441 cd01844 SGNH_hydrolase_like_6 20.3 3.4E+02 0.0074 19.5 5.6 42 107-155 57-102 (177)
442 PRK09435 membrane ATPase/prote 20.1 1.8E+02 0.0039 24.3 4.2 55 89-160 154-208 (332)
No 1
>KOG0084|consensus
Probab=100.00 E-value=2e-40 Score=248.58 Aligned_cols=136 Identities=24% Similarity=0.400 Sum_probs=127.1
Q ss_pred ccccCceeeEEE-EeCCCCc---eeEeee-ccCCCcccCcceeeeeEEEEEecCCCee----eeCCCchhchhhhhhhhc
Q psy15036 36 AAKEFSFNFGTQ-LGRRGIP---LLKHLK-YLGTGTHGKTVGIVFPAISVTYSIGPRY----FRFPLVSRFLSLTTGLYR 106 (179)
Q Consensus 36 ~~~~~~~~~Kiv-lG~~gvG---~~~~~~-~~~~~~~~~Ti~~~~~~k~v~~~~~~~i----wDt~G~e~~~~~~~~~~~ 106 (179)
++.+++|+|||| |||+||| ++.++. +.|.+.|..|||++|..+++.++ |+.+ |||+|||||+++..+|||
T Consensus 2 ~~~~~dylFKiiliGds~VGKtCL~~Rf~~~~f~e~~~sTIGVDf~~rt~e~~-gk~iKlQIWDTAGQERFrtit~syYR 80 (205)
T KOG0084|consen 2 MNPEYDYLFKIILIGDSGVGKTCLLLRFKDDTFTESYISTIGVDFKIRTVELD-GKTIKLQIWDTAGQERFRTITSSYYR 80 (205)
T ss_pred CCcccceEEEEEEECCCCcChhhhhhhhccCCcchhhcceeeeEEEEEEeeec-ceEEEEEeeeccccHHHhhhhHhhcc
Confidence 456899999998 9999999 555554 88999999999999999999999 9998 999999999999999999
Q ss_pred CCcEEEEEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCCCCCCCHHHHHHHHhhhCC
Q psy15036 107 GTMGFLLIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQRCREVVTPDQIMFGSTQSS 178 (179)
Q Consensus 107 ~~~~vilvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~~r~Vs~~e~~~~a~~~~~ 178 (179)
+|||+|+|||+|+++||+++..|+.+++++...+ .|++|||||||+.++|.|+.++|++||.+...
T Consensus 81 ~ahGii~vyDiT~~~SF~~v~~Wi~Ei~~~~~~~------v~~lLVGNK~Dl~~~~~v~~~~a~~fa~~~~~ 146 (205)
T KOG0084|consen 81 GAHGIIFVYDITKQESFNNVKRWIQEIDRYASEN------VPKLLVGNKCDLTEKRVVSTEEAQEFADELGI 146 (205)
T ss_pred CCCeEEEEEEcccHHHhhhHHHHHHHhhhhccCC------CCeEEEeeccccHhheecCHHHHHHHHHhcCC
Confidence 9999999999999999999999999999999886 68899999999999999999999999998754
No 2
>KOG0098|consensus
Probab=100.00 E-value=5.6e-37 Score=228.05 Aligned_cols=134 Identities=25% Similarity=0.427 Sum_probs=124.5
Q ss_pred cCceeeEEE-EeCCCCc----eeEeeeccCCCcccCcceeeeeEEEEEecCCCee----eeCCCchhchhhhhhhhcCCc
Q psy15036 39 EFSFNFGTQ-LGRRGIP----LLKHLKYLGTGTHGKTVGIVFPAISVTYSIGPRY----FRFPLVSRFLSLTTGLYRGTM 109 (179)
Q Consensus 39 ~~~~~~Kiv-lG~~gvG----~~~~~~~~~~~~~~~Ti~~~~~~k~v~~~~~~~i----wDt~G~e~~~~~~~~~~~~~~ 109 (179)
.+++.||+| +||.||| ++++....|.+.+..|+|++|..+.++++ ++++ |||+|||+|+++++.|||++.
T Consensus 2 ~~~~~fKyIiiGd~gVGKSclllrf~~krF~~~hd~TiGvefg~r~~~id-~k~IKlqiwDtaGqe~frsv~~syYr~a~ 80 (216)
T KOG0098|consen 2 SYAYLFKYIIIGDTGVGKSCLLLRFTDKRFQPVHDLTIGVEFGARMVTID-GKQIKLQIWDTAGQESFRSVTRSYYRGAA 80 (216)
T ss_pred CccceEEEEEECCCCccHHHHHHHHhccCccccccceeeeeeceeEEEEc-CceEEEEEEecCCcHHHHHHHHHHhccCc
Confidence 467899998 9999999 44555588999999999999999999999 9998 999999999999999999999
Q ss_pred EEEEEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCCCCCCCHHHHHHHHhhhCCC
Q psy15036 110 GFLLIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQRCREVVTPDQIMFGSTQSSL 179 (179)
Q Consensus 110 ~vilvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~~r~Vs~~e~~~~a~~~~~~ 179 (179)
|++||||+++++||+.|..|+.+++++..++ ..|+|+|||+||+..|+|+.||+.+||++|+.|
T Consensus 81 GalLVydit~r~sF~hL~~wL~D~rq~~~~N------mvImLiGNKsDL~~rR~Vs~EEGeaFA~ehgLi 144 (216)
T KOG0098|consen 81 GALLVYDITRRESFNHLTSWLEDARQHSNEN------MVIMLIGNKSDLEARREVSKEEGEAFAREHGLI 144 (216)
T ss_pred ceEEEEEccchhhHHHHHHHHHHHHHhcCCC------cEEEEEcchhhhhccccccHHHHHHHHHHcCce
Confidence 9999999999999999999999999998665 688999999999999999999999999999864
No 3
>KOG0087|consensus
Probab=100.00 E-value=4.7e-37 Score=232.53 Aligned_cols=136 Identities=24% Similarity=0.451 Sum_probs=126.5
Q ss_pred ccccCceeeEEE-EeCCCCc---eeEeee-ccCCCcccCcceeeeeEEEEEecCCCee----eeCCCchhchhhhhhhhc
Q psy15036 36 AAKEFSFNFGTQ-LGRRGIP---LLKHLK-YLGTGTHGKTVGIVFPAISVTYSIGPRY----FRFPLVSRFLSLTTGLYR 106 (179)
Q Consensus 36 ~~~~~~~~~Kiv-lG~~gvG---~~~~~~-~~~~~~~~~Ti~~~~~~k~v~~~~~~~i----wDt~G~e~~~~~~~~~~~ 106 (179)
..++++|.|||| |||++|| ++.++. +.|..+-.+|||++|..+.+.++ ++.+ |||+|||||+.+...|||
T Consensus 7 ~~~~~dylFKiVliGDS~VGKsnLlsRftrnEF~~~SksTIGvef~t~t~~vd-~k~vkaqIWDTAGQERyrAitSaYYr 85 (222)
T KOG0087|consen 7 KSEEYDYLFKIVLIGDSAVGKSNLLSRFTRNEFSLESKSTIGVEFATRTVNVD-GKTVKAQIWDTAGQERYRAITSAYYR 85 (222)
T ss_pred CccccceEEEEEEeCCCccchhHHHHHhcccccCcccccceeEEEEeeceeec-CcEEEEeeecccchhhhccccchhhc
Confidence 346899999998 9999999 555544 88999999999999999999999 9998 999999999999999999
Q ss_pred CCcEEEEEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCCCCCCCHHHHHHHHhhhCC
Q psy15036 107 GTMGFLLIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQRCREVVTPDQIMFGSTQSS 178 (179)
Q Consensus 107 ~~~~vilvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~~r~Vs~~e~~~~a~~~~~ 178 (179)
+|.|++||||+|++.||+++.+|+.+++.+.+.+ .+++|||||+||.+.|.|+.+|++.||++++.
T Consensus 86 gAvGAllVYDITr~~Tfenv~rWL~ELRdhad~n------ivimLvGNK~DL~~lraV~te~~k~~Ae~~~l 151 (222)
T KOG0087|consen 86 GAVGALLVYDITRRQTFENVERWLKELRDHADSN------IVIMLVGNKSDLNHLRAVPTEDGKAFAEKEGL 151 (222)
T ss_pred ccceeEEEEechhHHHHHHHHHHHHHHHhcCCCC------eEEEEeecchhhhhccccchhhhHhHHHhcCc
Confidence 9999999999999999999999999999999877 79999999999999999999999999998763
No 4
>KOG0078|consensus
Probab=100.00 E-value=2.4e-36 Score=229.10 Aligned_cols=133 Identities=25% Similarity=0.427 Sum_probs=125.2
Q ss_pred cCceeeEEE-EeCCCCc----eeEeeeccCCCcccCcceeeeeEEEEEecCCCee----eeCCCchhchhhhhhhhcCCc
Q psy15036 39 EFSFNFGTQ-LGRRGIP----LLKHLKYLGTGTHGKTVGIVFPAISVTYSIGPRY----FRFPLVSRFLSLTTGLYRGTM 109 (179)
Q Consensus 39 ~~~~~~Kiv-lG~~gvG----~~~~~~~~~~~~~~~Ti~~~~~~k~v~~~~~~~i----wDt~G~e~~~~~~~~~~~~~~ 109 (179)
.+++++||| +||++|| +.++..+.|...+..|+|++|..+.+.++ +..+ |||+||++|+.+...|||+|+
T Consensus 8 ~~d~~~kvlliGDs~vGKt~~l~rf~d~~f~~~~~sTiGIDFk~kti~l~-g~~i~lQiWDtaGQerf~ti~~sYyrgA~ 86 (207)
T KOG0078|consen 8 DYDYLFKLLLIGDSGVGKTCLLLRFSDDSFNTSFISTIGIDFKIKTIELD-GKKIKLQIWDTAGQERFRTITTAYYRGAM 86 (207)
T ss_pred CcceEEEEEEECCCCCchhHhhhhhhhccCcCCccceEEEEEEEEEEEeC-CeEEEEEEEEcccchhHHHHHHHHHhhcC
Confidence 899999998 9999999 44455588999999999999999999999 9988 999999999999999999999
Q ss_pred EEEEEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCCCCCCCHHHHHHHHhhhCC
Q psy15036 110 GFLLIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQRCREVVTPDQIMFGSTQSS 178 (179)
Q Consensus 110 ~vilvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~~r~Vs~~e~~~~a~~~~~ 178 (179)
+++||||++|+.||+++..|++.+.++.++. ++++|||||+|++++|+|+.+.++++|.+.+.
T Consensus 87 gi~LvyDitne~Sfeni~~W~~~I~e~a~~~------v~~~LvGNK~D~~~~R~V~~e~ge~lA~e~G~ 149 (207)
T KOG0078|consen 87 GILLVYDITNEKSFENIRNWIKNIDEHASDD------VVKILVGNKCDLEEKRQVSKERGEALAREYGI 149 (207)
T ss_pred eeEEEEEccchHHHHHHHHHHHHHHhhCCCC------CcEEEeeccccccccccccHHHHHHHHHHhCC
Confidence 9999999999999999999999999999876 79999999999999999999999999998763
No 5
>KOG0080|consensus
Probab=100.00 E-value=1.5e-36 Score=221.00 Aligned_cols=136 Identities=24% Similarity=0.412 Sum_probs=123.8
Q ss_pred ccCceeeEEE-EeCCCCc----eeEeeeccCCCcccCcceeeeeEEEEEecCCCee----eeCCCchhchhhhhhhhcCC
Q psy15036 38 KEFSFNFGTQ-LGRRGIP----LLKHLKYLGTGTHGKTVGIVFPAISVTYSIGPRY----FRFPLVSRFLSLTTGLYRGT 108 (179)
Q Consensus 38 ~~~~~~~Kiv-lG~~gvG----~~~~~~~~~~~~~~~Ti~~~~~~k~v~~~~~~~i----wDt~G~e~~~~~~~~~~~~~ 108 (179)
..++.++||+ ||++||| ++++..+.|.+....|||++|..+.++++ |..+ |||+|||+|+.+.++|||+|
T Consensus 6 s~~~~t~KiLlIGeSGVGKSSLllrFv~~~fd~~~~~tIGvDFkvk~m~vd-g~~~KlaiWDTAGqErFRtLTpSyyRga 84 (209)
T KOG0080|consen 6 SGYDTTFKILLIGESGVGKSSLLLRFVSNTFDDLHPTTIGVDFKVKVMQVD-GKRLKLAIWDTAGQERFRTLTPSYYRGA 84 (209)
T ss_pred cCcceeEEEEEEccCCccHHHHHHHHHhcccCccCCceeeeeEEEEEEEEc-CceEEEEEEeccchHhhhccCHhHhccC
Confidence 4677899998 9999999 55555577888888889999999999999 9998 99999999999999999999
Q ss_pred cEEEEEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCCCCCCCHHHHHHHHhhhCCC
Q psy15036 109 MGFLLIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQRCREVVTPDQIMFGSTQSSL 179 (179)
Q Consensus 109 ~~vilvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~~r~Vs~~e~~~~a~~~~~~ 179 (179)
.|+|+|||+|.++||.++..|++++..++.+. ....+|||||.|.+.+|.|+.+|+.+||++|++|
T Consensus 85 qGiIlVYDVT~Rdtf~kLd~W~~Eld~Ystn~-----diikmlVgNKiDkes~R~V~reEG~kfAr~h~~L 150 (209)
T KOG0080|consen 85 QGIILVYDVTSRDTFVKLDIWLKELDLYSTNP-----DIIKMLVGNKIDKESERVVDREEGLKFARKHRCL 150 (209)
T ss_pred ceeEEEEEccchhhHHhHHHHHHHHHhhcCCc-----cHhHhhhcccccchhcccccHHHHHHHHHhhCcE
Confidence 99999999999999999999999999887653 2566899999999999999999999999999875
No 6
>KOG0092|consensus
Probab=100.00 E-value=4.4e-35 Score=218.98 Aligned_cols=131 Identities=23% Similarity=0.360 Sum_probs=121.9
Q ss_pred eeeEEE-EeCCCCc----eeEeeeccCCCcccCcceeeeeEEEEEecCCCee----eeCCCchhchhhhhhhhcCCcEEE
Q psy15036 42 FNFGTQ-LGRRGIP----LLKHLKYLGTGTHGKTVGIVFPAISVTYSIGPRY----FRFPLVSRFLSLTTGLYRGTMGFL 112 (179)
Q Consensus 42 ~~~Kiv-lG~~gvG----~~~~~~~~~~~~~~~Ti~~~~~~k~v~~~~~~~i----wDt~G~e~~~~~~~~~~~~~~~vi 112 (179)
..+||| ||+.+|| ++|+..+.|++...||||..|..+.+.++ +..+ |||+|||+|+++.+.|||+++++|
T Consensus 4 ~~~KvvLLG~~~VGKSSlV~Rfvk~~F~e~~e~TIGaaF~tktv~~~-~~~ikfeIWDTAGQERy~slapMYyRgA~AAi 82 (200)
T KOG0092|consen 4 REFKVVLLGDSGVGKSSLVLRFVKDQFHENIEPTIGAAFLTKTVTVD-DNTIKFEIWDTAGQERYHSLAPMYYRGANAAI 82 (200)
T ss_pred ceEEEEEECCCCCCchhhhhhhhhCccccccccccccEEEEEEEEeC-CcEEEEEEEEcCCcccccccccceecCCcEEE
Confidence 579998 9999999 55666688999999999999999999999 8776 999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCCCCCCCHHHHHHHHhhhCCC
Q psy15036 113 LIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQRCREVVTPDQIMFGSTQSSL 179 (179)
Q Consensus 113 lvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~~r~Vs~~e~~~~a~~~~~~ 179 (179)
+|||+|+.+||..++.|++++.+..+.+ ..|.|||||+||.+.|+|+.+|+++||++++.+
T Consensus 83 vvYDit~~~SF~~aK~WvkeL~~~~~~~------~vialvGNK~DL~~~R~V~~~ea~~yAe~~gll 143 (200)
T KOG0092|consen 83 VVYDITDEESFEKAKNWVKELQRQASPN------IVIALVGNKADLLERREVEFEEAQAYAESQGLL 143 (200)
T ss_pred EEEecccHHHHHHHHHHHHHHHhhCCCC------eEEEEecchhhhhhcccccHHHHHHHHHhcCCE
Confidence 9999999999999999999999988876 678899999999999999999999999998864
No 7
>KOG0094|consensus
Probab=100.00 E-value=5.2e-35 Score=219.03 Aligned_cols=141 Identities=20% Similarity=0.266 Sum_probs=123.6
Q ss_pred ccccccccCceeeEEE-EeCCCCc---ee-EeeeccCCCcccCcceeeeeEEEEEecCCCee----eeCCCchhchhhhh
Q psy15036 32 TKMTAAKEFSFNFGTQ-LGRRGIP---LL-KHLKYLGTGTHGKTVGIVFPAISVTYSIGPRY----FRFPLVSRFLSLTT 102 (179)
Q Consensus 32 ~~m~~~~~~~~~~Kiv-lG~~gvG---~~-~~~~~~~~~~~~~Ti~~~~~~k~v~~~~~~~i----wDt~G~e~~~~~~~ 102 (179)
..|......-..+|+| ||+.+|| ++ ++..+.|...|.+|||++|.++++.+. +..+ |||+|||+|+++.+
T Consensus 11 ~~~~~~~~~~k~~KlVflGdqsVGKTslItRf~yd~fd~~YqATIGiDFlskt~~l~-d~~vrLQlWDTAGQERFrslip 89 (221)
T KOG0094|consen 11 QTMATFGAPLKKYKLVFLGDQSVGKTSLITRFMYDKFDNTYQATIGIDFLSKTMYLE-DRTVRLQLWDTAGQERFRSLIP 89 (221)
T ss_pred HhccccCccceEEEEEEEccCccchHHHHHHHHHhhhcccccceeeeEEEEEEEEEc-CcEEEEEEEecccHHHHhhhhh
Confidence 3333333333469999 9999999 44 445588999999999999999999999 9988 99999999999999
Q ss_pred hhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCCCCCCCHHHHHHHHhhhCC
Q psy15036 103 GLYRGTMGFLLIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQRCREVVTPDQIMFGSTQSS 178 (179)
Q Consensus 103 ~~~~~~~~vilvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~~r~Vs~~e~~~~a~~~~~ 178 (179)
.|+|++.++|+|||++|++||++..+|++.+++..+.+ .+.|+|||||.||.++|+|+.+|+...|++...
T Consensus 90 sY~Rds~vaviVyDit~~~Sfe~t~kWi~dv~~e~gs~-----~viI~LVGnKtDL~dkrqvs~eEg~~kAkel~a 160 (221)
T KOG0094|consen 90 SYIRDSSVAVIVYDITDRNSFENTSKWIEDVRRERGSD-----DVIIFLVGNKTDLSDKRQVSIEEGERKAKELNA 160 (221)
T ss_pred hhccCCeEEEEEEeccccchHHHHHHHHHHHHhccCCC-----ceEEEEEcccccccchhhhhHHHHHHHHHHhCc
Confidence 99999999999999999999999999999999877663 178899999999999999999999999998753
No 8
>KOG0079|consensus
Probab=100.00 E-value=3.1e-35 Score=211.59 Aligned_cols=133 Identities=28% Similarity=0.422 Sum_probs=124.3
Q ss_pred cccCceeeEEE-EeCCCCc----eeEeeeccCCCcccCcceeeeeEEEEEecCCCee----eeCCCchhchhhhhhhhcC
Q psy15036 37 AKEFSFNFGTQ-LGRRGIP----LLKHLKYLGTGTHGKTVGIVFPAISVTYSIGPRY----FRFPLVSRFLSLTTGLYRG 107 (179)
Q Consensus 37 ~~~~~~~~Kiv-lG~~gvG----~~~~~~~~~~~~~~~Ti~~~~~~k~v~~~~~~~i----wDt~G~e~~~~~~~~~~~~ 107 (179)
+.++++++|.+ |||+||| ++++-.+.|...|..|+|++|..+++.++ |.++ ||++|||+|+.+...||++
T Consensus 2 ar~~dhLfkllIigDsgVGKssLl~rF~ddtFs~sYitTiGvDfkirTv~i~-G~~VkLqIwDtAGqErFrtitstyyrg 80 (198)
T KOG0079|consen 2 ARDYDHLFKLLIIGDSGVGKSSLLLRFADDTFSGSYITTIGVDFKIRTVDIN-GDRVKLQIWDTAGQERFRTITSTYYRG 80 (198)
T ss_pred cccHHHHHHHHeecCCcccHHHHHHHHhhcccccceEEEeeeeEEEEEeecC-CcEEEEEEeecccHHHHHHHHHHHccC
Confidence 46788999997 9999999 55555688999999999999999999999 9998 9999999999999999999
Q ss_pred CcEEEEEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCCCCCCCHHHHHHHHhhhC
Q psy15036 108 TMGFLLIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQRCREVVTPDQIMFGSTQS 177 (179)
Q Consensus 108 ~~~vilvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~~r~Vs~~e~~~~a~~~~ 177 (179)
+|++++|||+||.+||.++++|+++++..++. .|.+|||||+|+.+.|.|..++|++||.+++
T Consensus 81 thgv~vVYDVTn~ESF~Nv~rWLeei~~ncds-------v~~vLVGNK~d~~~RrvV~t~dAr~~A~~mg 143 (198)
T KOG0079|consen 81 THGVIVVYDVTNGESFNNVKRWLEEIRNNCDS-------VPKVLVGNKNDDPERRVVDTEDARAFALQMG 143 (198)
T ss_pred CceEEEEEECcchhhhHhHHHHHHHHHhcCcc-------ccceecccCCCCccceeeehHHHHHHHHhcC
Confidence 99999999999999999999999999998876 6889999999999999999999999999875
No 9
>KOG0095|consensus
Probab=100.00 E-value=5.4e-34 Score=205.71 Aligned_cols=132 Identities=24% Similarity=0.404 Sum_probs=125.1
Q ss_pred ccCceeeEEE-EeCCCCc---eeEeee-ccCCCcccCcceeeeeEEEEEecCCCee----eeCCCchhchhhhhhhhcCC
Q psy15036 38 KEFSFNFGTQ-LGRRGIP---LLKHLK-YLGTGTHGKTVGIVFPAISVTYSIGPRY----FRFPLVSRFLSLTTGLYRGT 108 (179)
Q Consensus 38 ~~~~~~~Kiv-lG~~gvG---~~~~~~-~~~~~~~~~Ti~~~~~~k~v~~~~~~~i----wDt~G~e~~~~~~~~~~~~~ 108 (179)
++|+|+|||| +|+.||| +.+++. +.|++....|||++|..|++.++ |+++ |||+|||+|+++..+|||.+
T Consensus 2 edykflfkivlvgnagvgktclvrrftqglfppgqgatigvdfmiktvev~-gekiklqiwdtagqerfrsitqsyyrsa 80 (213)
T KOG0095|consen 2 EDYKFLFKIVLVGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEVN-GEKIKLQIWDTAGQERFRSITQSYYRSA 80 (213)
T ss_pred cccceeEEEEEEccCCcCcchhhhhhhccCCCCCCCceeeeeEEEEEEEEC-CeEEEEEEeeccchHHHHHHHHHHhhhc
Confidence 5899999998 9999999 777776 88999999999999999999999 9998 99999999999999999999
Q ss_pred cEEEEEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCCCCCCCHHHHHHHHhhh
Q psy15036 109 MGFLLIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQRCREVVTPDQIMFGSTQ 176 (179)
Q Consensus 109 ~~vilvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~~r~Vs~~e~~~~a~~~ 176 (179)
|++|||||++-..||+.+..|+.+|.++...+ ...||||||.|+.+.|+|+..-+++|++.|
T Consensus 81 halilvydiscqpsfdclpewlreie~yan~k------vlkilvgnk~d~~drrevp~qigeefs~~q 142 (213)
T KOG0095|consen 81 HALILVYDISCQPSFDCLPEWLREIEQYANNK------VLKILVGNKIDLADRREVPQQIGEEFSEAQ 142 (213)
T ss_pred ceEEEEEecccCcchhhhHHHHHHHHHHhhcc------eEEEeeccccchhhhhhhhHHHHHHHHHhh
Confidence 99999999999999999999999999999887 678999999999999999999999999875
No 10
>KOG0086|consensus
Probab=100.00 E-value=5e-34 Score=206.51 Aligned_cols=134 Identities=25% Similarity=0.429 Sum_probs=124.3
Q ss_pred ccccCceeeEEE-EeCCCCc---eeEee-eccCCCcccCcceeeeeEEEEEecCCCee----eeCCCchhchhhhhhhhc
Q psy15036 36 AAKEFSFNFGTQ-LGRRGIP---LLKHL-KYLGTGTHGKTVGIVFPAISVTYSIGPRY----FRFPLVSRFLSLTTGLYR 106 (179)
Q Consensus 36 ~~~~~~~~~Kiv-lG~~gvG---~~~~~-~~~~~~~~~~Ti~~~~~~k~v~~~~~~~i----wDt~G~e~~~~~~~~~~~ 106 (179)
+.+.|+|++|+| +|..|.| ++.++ ...+..+..-|+|++|.++.+.++ ++.+ |||+|||+|++..++|||
T Consensus 2 msEtYDyLfKfl~iG~aGtGKSCLLh~Fie~kfkDdssHTiGveFgSrIinVG-gK~vKLQIWDTAGQErFRSVtRsYYR 80 (214)
T KOG0086|consen 2 MSETYDYLFKFLVIGSAGTGKSCLLHQFIENKFKDDSSHTIGVEFGSRIVNVG-GKTVKLQIWDTAGQERFRSVTRSYYR 80 (214)
T ss_pred cchhhhhhheeEEeccCCCChhHHHHHHHHhhhcccccceeeeeecceeeeec-CcEEEEEEeecccHHHHHHHHHHHhc
Confidence 457899999998 9999999 44444 477888888999999999999999 9988 999999999999999999
Q ss_pred CCcEEEEEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCCCCCCCHHHHHHHHhhh
Q psy15036 107 GTMGFLLIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQRCREVVTPDQIMFGSTQ 176 (179)
Q Consensus 107 ~~~~vilvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~~r~Vs~~e~~~~a~~~ 176 (179)
++.|.+||||+++++||+.+..|+..++...+++ +.++|+|||.||+.+|+|+..||..||++.
T Consensus 81 GAAGAlLVYD~TsrdsfnaLtnWL~DaR~lAs~n------IvviL~GnKkDL~~~R~VtflEAs~FaqEn 144 (214)
T KOG0086|consen 81 GAAGALLVYDITSRDSFNALTNWLTDARTLASPN------IVVILCGNKKDLDPEREVTFLEASRFAQEN 144 (214)
T ss_pred cccceEEEEeccchhhHHHHHHHHHHHHhhCCCc------EEEEEeCChhhcChhhhhhHHHHHhhhccc
Confidence 9999999999999999999999999999999887 688999999999999999999999999874
No 11
>KOG0091|consensus
Probab=100.00 E-value=2.6e-33 Score=204.67 Aligned_cols=135 Identities=25% Similarity=0.403 Sum_probs=121.8
Q ss_pred cCceeeEEE-EeCCCCc---eeEeee-ccCCCcccCcceeeeeEEEEEecCCCee----eeCCCchhchhhhhhhhcCCc
Q psy15036 39 EFSFNFGTQ-LGRRGIP---LLKHLK-YLGTGTHGKTVGIVFPAISVTYSIGPRY----FRFPLVSRFLSLTTGLYRGTM 109 (179)
Q Consensus 39 ~~~~~~Kiv-lG~~gvG---~~~~~~-~~~~~~~~~Ti~~~~~~k~v~~~~~~~i----wDt~G~e~~~~~~~~~~~~~~ 109 (179)
-+.|.|+++ |||+.|| ++++++ +.+.+--.||+|++|+.+.+.+.||.++ |||+|||+|+++.++|||++-
T Consensus 4 if~yqfrlivigdstvgkssll~~ft~gkfaelsdptvgvdffarlie~~pg~riklqlwdtagqerfrsitksyyrnsv 83 (213)
T KOG0091|consen 4 IFHYQFRLIVIGDSTVGKSSLLRYFTEGKFAELSDPTVGVDFFARLIELRPGYRIKLQLWDTAGQERFRSITKSYYRNSV 83 (213)
T ss_pred ceEEEEEEEEEcCCcccHHHHHHHHhcCcccccCCCccchHHHHHHHhcCCCcEEEEEEeeccchHHHHHHHHHHhhccc
Confidence 467899998 9999999 777776 7788888999999999999999889988 999999999999999999999
Q ss_pred EEEEEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCCCCCCCHHHHHHHHhhhC
Q psy15036 110 GFLLIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQRCREVVTPDQIMFGSTQS 177 (179)
Q Consensus 110 ~vilvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~~r~Vs~~e~~~~a~~~~ 177 (179)
|+++|||++|++||+.+..|+++...+.... ..+.+.|||+|+||..+|+|+.+||++||+.++
T Consensus 84 gvllvyditnr~sfehv~~w~~ea~m~~q~P----~k~VFlLVGhKsDL~SqRqVt~EEaEklAa~hg 147 (213)
T KOG0091|consen 84 GVLLVYDITNRESFEHVENWVKEAAMATQGP----DKVVFLLVGHKSDLQSQRQVTAEEAEKLAASHG 147 (213)
T ss_pred ceEEEEeccchhhHHHHHHHHHHHHHhcCCC----CeeEEEEeccccchhhhccccHHHHHHHHHhcC
Confidence 9999999999999999999999998765421 126778999999999999999999999999886
No 12
>KOG0093|consensus
Probab=99.98 E-value=3.1e-32 Score=195.87 Aligned_cols=135 Identities=27% Similarity=0.410 Sum_probs=122.6
Q ss_pred ccccCceeeEEE-EeCCCCc----eeEeeeccCCCcccCcceeeeeEEEEEecCCCee----eeCCCchhchhhhhhhhc
Q psy15036 36 AAKEFSFNFGTQ-LGRRGIP----LLKHLKYLGTGTHGKTVGIVFPAISVTYSIGPRY----FRFPLVSRFLSLTTGLYR 106 (179)
Q Consensus 36 ~~~~~~~~~Kiv-lG~~gvG----~~~~~~~~~~~~~~~Ti~~~~~~k~v~~~~~~~i----wDt~G~e~~~~~~~~~~~ 106 (179)
..+.++|.+|++ +|++.|| +.+.....|...+..|+|++|..|++--. .+++ |||+|||+|+.+...|||
T Consensus 14 ~dqnFDymfKlliiGnssvGKTSfl~ry~ddSFt~afvsTvGidFKvKTvyr~-~kRiklQiwDTagqEryrtiTTayyR 92 (193)
T KOG0093|consen 14 IDQNFDYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVYRS-DKRIKLQIWDTAGQERYRTITTAYYR 92 (193)
T ss_pred ccccccceeeEEEEccCCccchhhhHHhhccccccceeeeeeeeEEEeEeeec-ccEEEEEEEecccchhhhHHHHHHhh
Confidence 345788999998 9999999 44444577899999999999999988766 7777 999999999999999999
Q ss_pred CCcEEEEEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCCCCCCCHHHHHHHHhhhC
Q psy15036 107 GTMGFLLIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQRCREVVTPDQIMFGSTQS 177 (179)
Q Consensus 107 ~~~~vilvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~~r~Vs~~e~~~~a~~~~ 177 (179)
+++|+|||||++|++||..++.|..+|..++-.+ .++|||||||||+++|.|+.|.++.||.+.+
T Consensus 93 gamgfiLmyDitNeeSf~svqdw~tqIktysw~n------aqvilvgnKCDmd~eRvis~e~g~~l~~~LG 157 (193)
T KOG0093|consen 93 GAMGFILMYDITNEESFNSVQDWITQIKTYSWDN------AQVILVGNKCDMDSERVISHERGRQLADQLG 157 (193)
T ss_pred ccceEEEEEecCCHHHHHHHHHHHHHheeeeccC------ceEEEEecccCCccceeeeHHHHHHHHHHhC
Confidence 9999999999999999999999999999887766 7999999999999999999999999999865
No 13
>KOG0081|consensus
Probab=99.97 E-value=3e-32 Score=198.40 Aligned_cols=134 Identities=30% Similarity=0.417 Sum_probs=118.3
Q ss_pred cCceeeEEE-EeCCCCc---eeEeee-ccCCCcccCcceeeeeEEEEEecC--------CCee----eeCCCchhchhhh
Q psy15036 39 EFSFNFGTQ-LGRRGIP---LLKHLK-YLGTGTHGKTVGIVFPAISVTYSI--------GPRY----FRFPLVSRFLSLT 101 (179)
Q Consensus 39 ~~~~~~Kiv-lG~~gvG---~~~~~~-~~~~~~~~~Ti~~~~~~k~v~~~~--------~~~i----wDt~G~e~~~~~~ 101 (179)
+|+|++|++ +||+||| ++.++. +.|...+..|+|++|..|.+.++. +.++ |||+|||+|+++.
T Consensus 5 dydylikfLaLGDSGVGKTs~Ly~YTD~~F~~qFIsTVGIDFreKrvvY~s~gp~g~gr~~rihLQlWDTAGQERFRSLT 84 (219)
T KOG0081|consen 5 DYDYLIKFLALGDSGVGKTSFLYQYTDGKFNTQFISTVGIDFREKRVVYNSSGPGGGGRGQRIHLQLWDTAGQERFRSLT 84 (219)
T ss_pred cHHHHHHHHhhccCCCCceEEEEEecCCcccceeEEEeecccccceEEEeccCCCCCCcceEEEEeeeccccHHHHHHHH
Confidence 789999999 9999999 454544 789999999999999988887741 1233 9999999999999
Q ss_pred hhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHh-CCccCccccceEEEEeeCCCcCCCCCCCHHHHHHHHhhhCC
Q psy15036 102 TGLYRGTMGFLLIFDVTNENSFKDVEKWLLQIKVMD-GALFTHFELQIVFMRGCLELLQRCREVVTPDQIMFGSTQSS 178 (179)
Q Consensus 102 ~~~~~~~~~vilvyDit~~~Sf~~l~~w~~~i~~~~-~~~~~~~~~~~iilvGnK~Dl~~~r~Vs~~e~~~~a~~~~~ 178 (179)
..|||+|-|++|+||+|+++||-++.+|+.+++.+. .++ |-|+|+|||+||+++|+|++++++++|.+-+.
T Consensus 85 TAFfRDAMGFlLiFDlT~eqSFLnvrnWlSQL~~hAYcE~------PDivlcGNK~DL~~~R~Vs~~qa~~La~kygl 156 (219)
T KOG0081|consen 85 TAFFRDAMGFLLIFDLTSEQSFLNVRNWLSQLQTHAYCEN------PDIVLCGNKADLEDQRVVSEDQAAALADKYGL 156 (219)
T ss_pred HHHHHhhccceEEEeccchHHHHHHHHHHHHHHHhhccCC------CCEEEEcCccchhhhhhhhHHHHHHHHHHhCC
Confidence 999999999999999999999999999999998654 333 78999999999999999999999999998764
No 14
>KOG0088|consensus
Probab=99.97 E-value=2.8e-32 Score=198.43 Aligned_cols=133 Identities=25% Similarity=0.377 Sum_probs=122.4
Q ss_pred cCceeeEEE-EeCCCCc----eeEeeeccCCCcccCcceeeeeEEEEEecCCCee----eeCCCchhchhhhhhhhcCCc
Q psy15036 39 EFSFNFGTQ-LGRRGIP----LLKHLKYLGTGTHGKTVGIVFPAISVTYSIGPRY----FRFPLVSRFLSLTTGLYRGTM 109 (179)
Q Consensus 39 ~~~~~~Kiv-lG~~gvG----~~~~~~~~~~~~~~~Ti~~~~~~k~v~~~~~~~i----wDt~G~e~~~~~~~~~~~~~~ 109 (179)
...+.||+| +|+..|| .+++..+.|...+..|+...|..+.+.+. +.+. |||+|||+|..+-+.|||+++
T Consensus 9 g~s~~FK~VLLGEGCVGKtSLVLRy~EnkFn~kHlsTlQASF~~kk~n~e-d~ra~L~IWDTAGQErfHALGPIYYRgSn 87 (218)
T KOG0088|consen 9 GKSFKFKIVLLGEGCVGKTSLVLRYVENKFNCKHLSTLQASFQNKKVNVE-DCRADLHIWDTAGQERFHALGPIYYRGSN 87 (218)
T ss_pred CCceeeEEEEEcCCccchhHHHHHHHHhhcchhhHHHHHHHHhhcccccc-cceeeeeeeeccchHhhhccCceEEeCCC
Confidence 456899998 9999999 56666688999999999999999999998 7776 999999999999999999999
Q ss_pred EEEEEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCCCCCCCHHHHHHHHhhhCC
Q psy15036 110 GFLLIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQRCREVVTPDQIMFGSTQSS 178 (179)
Q Consensus 110 ~vilvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~~r~Vs~~e~~~~a~~~~~ 178 (179)
|++||||+|+++||+.++.|..++++..+.. ..+++||||+||+++|.|+.+||.++|+..++
T Consensus 88 GalLVyDITDrdSFqKVKnWV~Elr~mlGne------i~l~IVGNKiDLEeeR~Vt~qeAe~YAesvGA 150 (218)
T KOG0088|consen 88 GALLVYDITDRDSFQKVKNWVLELRTMLGNE------IELLIVGNKIDLEEERQVTRQEAEAYAESVGA 150 (218)
T ss_pred ceEEEEeccchHHHHHHHHHHHHHHHHhCCe------eEEEEecCcccHHHhhhhhHHHHHHHHHhhch
Confidence 9999999999999999999999999998886 67889999999999999999999999998765
No 15
>KOG0394|consensus
Probab=99.97 E-value=4.1e-31 Score=196.41 Aligned_cols=134 Identities=20% Similarity=0.266 Sum_probs=117.9
Q ss_pred eeeEEE-EeCCCCc---eeEeee-ccCCCcccCcceeeeeEEEEEecCCCee----eeCCCchhchhhhhhhhcCCcEEE
Q psy15036 42 FNFGTQ-LGRRGIP---LLKHLK-YLGTGTHGKTVGIVFPAISVTYSIGPRY----FRFPLVSRFLSLTTGLYRGTMGFL 112 (179)
Q Consensus 42 ~~~Kiv-lG~~gvG---~~~~~~-~~~~~~~~~Ti~~~~~~k~v~~~~~~~i----wDt~G~e~~~~~~~~~~~~~~~vi 112 (179)
.++||+ +||+||| ++.+++ ..|...|..|||.+|..|.+.++ +..+ |||+|||+|+++...|||++|+++
T Consensus 8 ~lLKViiLGDsGVGKtSLmn~yv~~kF~~qykaTIgadFltKev~Vd-~~~vtlQiWDTAGQERFqsLg~aFYRgaDcCv 86 (210)
T KOG0394|consen 8 TLLKVIILGDSGVGKTSLMNQYVNKKFSQQYKATIGADFLTKEVQVD-DRSVTLQIWDTAGQERFQSLGVAFYRGADCCV 86 (210)
T ss_pred cceEEEEeCCCCccHHHHHHHHHHHHHHHHhccccchhheeeEEEEc-CeEEEEEEEecccHHHhhhcccceecCCceEE
Confidence 479998 9999999 666666 66889999999999999999999 8887 999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCC--CCCCCHHHHHHHHhhhCC
Q psy15036 113 LIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQR--CREVVTPDQIMFGSTQSS 178 (179)
Q Consensus 113 lvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~--~r~Vs~~e~~~~a~~~~~ 178 (179)
||||+++++||++|..|.+++..+....-+ +.-|+||+|||.|+.+ .|+||...|++|+++++-
T Consensus 87 lvydv~~~~Sfe~L~~Wr~EFl~qa~~~~P--e~FPFVilGNKiD~~~~~~r~VS~~~Aq~WC~s~gn 152 (210)
T KOG0394|consen 87 LVYDVNNPKSFENLENWRKEFLIQASPQDP--ETFPFVILGNKIDVDGGKSRQVSEKKAQTWCKSKGN 152 (210)
T ss_pred EEeecCChhhhccHHHHHHHHHHhcCCCCC--CcccEEEEcccccCCCCccceeeHHHHHHHHHhcCC
Confidence 999999999999999999999876653211 1247888899999976 399999999999998764
No 16
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=99.96 E-value=2.7e-29 Score=192.26 Aligned_cols=131 Identities=20% Similarity=0.365 Sum_probs=116.5
Q ss_pred cCceeeEEE-EeCCCCc---eeEeee-ccCCCcccCcceeeeeEEEEEecCCCee----eeCCCchhchhhhhhhhcCCc
Q psy15036 39 EFSFNFGTQ-LGRRGIP---LLKHLK-YLGTGTHGKTVGIVFPAISVTYSIGPRY----FRFPLVSRFLSLTTGLYRGTM 109 (179)
Q Consensus 39 ~~~~~~Kiv-lG~~gvG---~~~~~~-~~~~~~~~~Ti~~~~~~k~v~~~~~~~i----wDt~G~e~~~~~~~~~~~~~~ 109 (179)
.+++.+||+ +|+.||| ++.++. +.+.+.+.+|++.++..+.+.++ +..+ ||++|+++|..+++.|++++|
T Consensus 2 ~~~~~~KivviG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~i~~~-~~~~~l~iwDt~G~~~~~~l~~~~~~~ad 80 (189)
T cd04121 2 AYDYLLKFLLVGDSDVGKGEILASLQDGSTESPYGYNMGIDYKTTTILLD-GRRVKLQLWDTSGQGRFCTIFRSYSRGAQ 80 (189)
T ss_pred CCCceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCcceeEEEEEEEEEC-CEEEEEEEEeCCCcHHHHHHHHHHhcCCC
Confidence 466789998 9999999 555555 66778888999999988888888 7766 999999999999999999999
Q ss_pred EEEEEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCCCCCCCHHHHHHHHhhhC
Q psy15036 110 GFLLIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQRCREVVTPDQIMFGSTQS 177 (179)
Q Consensus 110 ~vilvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~~r~Vs~~e~~~~a~~~~ 177 (179)
++|+|||+++++||+++..|++++.+..+. +|+||||||+||.++|.|+.++++++|++.+
T Consensus 81 ~illVfD~t~~~Sf~~~~~w~~~i~~~~~~-------~piilVGNK~DL~~~~~v~~~~~~~~a~~~~ 141 (189)
T cd04121 81 GIILVYDITNRWSFDGIDRWIKEIDEHAPG-------VPKILVGNRLHLAFKRQVATEQAQAYAERNG 141 (189)
T ss_pred EEEEEEECcCHHHHHHHHHHHHHHHHhCCC-------CCEEEEEECccchhccCCCHHHHHHHHHHcC
Confidence 999999999999999999999999876543 7899999999999999999999999998764
No 17
>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight
Probab=99.96 E-value=1.5e-28 Score=187.13 Aligned_cols=128 Identities=15% Similarity=0.149 Sum_probs=111.5
Q ss_pred eeeEEE-EeCCCCc---eeEeee-ccCCCcccCcceeeeeEEEEEecCCCee----eeCCCchhchhhhhhhhcCCcEEE
Q psy15036 42 FNFGTQ-LGRRGIP---LLKHLK-YLGTGTHGKTVGIVFPAISVTYSIGPRY----FRFPLVSRFLSLTTGLYRGTMGFL 112 (179)
Q Consensus 42 ~~~Kiv-lG~~gvG---~~~~~~-~~~~~~~~~Ti~~~~~~k~v~~~~~~~i----wDt~G~e~~~~~~~~~~~~~~~vi 112 (179)
..+||+ +|++||| ++.++. +.|.+.|.||++..+ .+.+.++ +..+ |||+|+++|..+++.||++++++|
T Consensus 4 ~~~KivvvGd~~vGKTsli~~~~~~~f~~~~~pT~~~~~-~~~~~~~-~~~~~l~iwDtaG~e~~~~~~~~~~~~ad~~i 81 (182)
T cd04172 4 VKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY-TASFEID-TQRIELSLWDTSGSPYYDNVRPLSYPDSDAVL 81 (182)
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhCCCCCccCCceeeee-EEEEEEC-CEEEEEEEEECCCchhhHhhhhhhcCCCCEEE
Confidence 578998 9999999 554444 778899999999766 4678888 7776 999999999999999999999999
Q ss_pred EEEeCCChhhHHHH-HHHHHHHHHHhCCccCccccceEEEEeeCCCcCC------------CCCCCHHHHHHHHhhhCC
Q psy15036 113 LIFDVTNENSFKDV-EKWLLQIKVMDGALFTHFELQIVFMRGCLELLQR------------CREVVTPDQIMFGSTQSS 178 (179)
Q Consensus 113 lvyDit~~~Sf~~l-~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~------------~r~Vs~~e~~~~a~~~~~ 178 (179)
+|||+++++||+++ ..|++++++..+. +|++|||||+||.+ +|.|+.+|++++|++.+.
T Consensus 82 lvyDit~~~Sf~~~~~~w~~~i~~~~~~-------~piilVgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~ 153 (182)
T cd04172 82 ICFDISRPETLDSVLKKWKGEIQEFCPN-------TKMLLVGCKSDLRTDLTTLVELSNHRQTPVSYDQGANMAKQIGA 153 (182)
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHHCCC-------CCEEEEeEChhhhcChhhHHHHHhcCCCCCCHHHHHHHHHHcCC
Confidence 99999999999998 8999999887643 68999999999964 467999999999998763
No 18
>KOG0097|consensus
Probab=99.96 E-value=2.9e-29 Score=179.92 Aligned_cols=133 Identities=22% Similarity=0.436 Sum_probs=118.8
Q ss_pred cCceeeEEE-EeCCCCc---eeEeee-ccCCCcccCcceeeeeEEEEEecCCCee----eeCCCchhchhhhhhhhcCCc
Q psy15036 39 EFSFNFGTQ-LGRRGIP---LLKHLK-YLGTGTHGKTVGIVFPAISVTYSIGPRY----FRFPLVSRFLSLTTGLYRGTM 109 (179)
Q Consensus 39 ~~~~~~Kiv-lG~~gvG---~~~~~~-~~~~~~~~~Ti~~~~~~k~v~~~~~~~i----wDt~G~e~~~~~~~~~~~~~~ 109 (179)
.|+|.||.+ |||-||| ++..+. ..|-.+-.-|+|++|..+.+.+. |+++ |||+|||+|+...++|||++.
T Consensus 7 nysyifkyiiigdmgvgkscllhqftekkfmadcphtigvefgtriievs-gqkiklqiwdtagqerfravtrsyyrgaa 85 (215)
T KOG0097|consen 7 NYSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVS-GQKIKLQIWDTAGQERFRAVTRSYYRGAA 85 (215)
T ss_pred chhheEEEEEEccccccHHHHHHHHHHHHHhhcCCcccceecceeEEEec-CcEEEEEEeecccHHHHHHHHHHHhcccc
Confidence 567889998 9999999 444444 44555667799999999999999 9998 999999999999999999999
Q ss_pred EEEEEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCCCCCCCHHHHHHHHhhhCC
Q psy15036 110 GFLLIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQRCREVVTPDQIMFGSTQSS 178 (179)
Q Consensus 110 ~vilvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~~r~Vs~~e~~~~a~~~~~ 178 (179)
+.++|||++.+.+++.++.|+...+..-.++ ..|+|+|||.||+.+|.|+.+|+++||++.+.
T Consensus 86 galmvyditrrstynhlsswl~dar~ltnpn------t~i~lignkadle~qrdv~yeeak~faeengl 148 (215)
T KOG0097|consen 86 GALMVYDITRRSTYNHLSSWLTDARNLTNPN------TVIFLIGNKADLESQRDVTYEEAKEFAEENGL 148 (215)
T ss_pred ceeEEEEehhhhhhhhHHHHHhhhhccCCCc------eEEEEecchhhhhhcccCcHHHHHHHHhhcCe
Confidence 9999999999999999999999998876655 68999999999999999999999999998763
No 19
>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=99.96 E-value=1.6e-28 Score=189.85 Aligned_cols=125 Identities=22% Similarity=0.382 Sum_probs=111.8
Q ss_pred EEE-EeCCCCc---eeEeee-ccCCCcccCcceeeeeEEEEEecCCCee----eeCCCchhchhhhhhhhcCCcEEEEEE
Q psy15036 45 GTQ-LGRRGIP---LLKHLK-YLGTGTHGKTVGIVFPAISVTYSIGPRY----FRFPLVSRFLSLTTGLYRGTMGFLLIF 115 (179)
Q Consensus 45 Kiv-lG~~gvG---~~~~~~-~~~~~~~~~Ti~~~~~~k~v~~~~~~~i----wDt~G~e~~~~~~~~~~~~~~~vilvy 115 (179)
.|+ +|++||| ++.++. +.|.+.+.+|++.++..+.+.++ +..+ |||+|+++|+.+++.||++++++|+||
T Consensus 2 ~vvvlG~~gVGKTSli~r~~~~~f~~~~~~Ti~~~~~~~~i~~~-~~~v~l~iwDtaGqe~~~~l~~~y~~~ad~iIlVf 80 (202)
T cd04120 2 QVIIIGSRGVGKTSLMRRFTDDTFCEACKSGVGVDFKIKTVELR-GKKIRLQIWDTAGQERFNSITSAYYRSAKGIILVY 80 (202)
T ss_pred EEEEECcCCCCHHHHHHHHHhCCCCCcCCCcceeEEEEEEEEEC-CEEEEEEEEeCCCchhhHHHHHHHhcCCCEEEEEE
Confidence 576 9999999 555544 77888999999999988889998 7666 999999999999999999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCCCCCCCHHHHHHHHhhh
Q psy15036 116 DVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQRCREVVTPDQIMFGSTQ 176 (179)
Q Consensus 116 Dit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~~r~Vs~~e~~~~a~~~ 176 (179)
|+++++||++++.|++.+++....+ +|++|||||+||.++|+|+.+++.++|++.
T Consensus 81 Dvtd~~Sf~~l~~w~~~i~~~~~~~------~piilVgNK~DL~~~~~v~~~~~~~~a~~~ 135 (202)
T cd04120 81 DITKKETFDDLPKWMKMIDKYASED------AELLLVGNKLDCETDREISRQQGEKFAQQI 135 (202)
T ss_pred ECcCHHHHHHHHHHHHHHHHhCCCC------CcEEEEEECcccccccccCHHHHHHHHHhc
Confidence 9999999999999999988765544 789999999999989999999999999864
No 20
>KOG0083|consensus
Probab=99.95 E-value=6.4e-29 Score=176.44 Aligned_cols=124 Identities=23% Similarity=0.311 Sum_probs=111.6
Q ss_pred EEeCCCCc----eeEeeeccC-CCcccCcceeeeeEEEEEecCCCee----eeCCCchhchhhhhhhhcCCcEEEEEEeC
Q psy15036 47 QLGRRGIP----LLKHLKYLG-TGTHGKTVGIVFPAISVTYSIGPRY----FRFPLVSRFLSLTTGLYRGTMGFLLIFDV 117 (179)
Q Consensus 47 vlG~~gvG----~~~~~~~~~-~~~~~~Ti~~~~~~k~v~~~~~~~i----wDt~G~e~~~~~~~~~~~~~~~vilvyDi 117 (179)
++||+++| ++++-.+.| ...+.+|+|++|..|.+..+ +.++ |||+|||+|++....|||++|+++++||+
T Consensus 2 llgds~~gktcllir~kdgafl~~~fistvgid~rnkli~~~-~~kvklqiwdtagqerfrsvt~ayyrda~allllydi 80 (192)
T KOG0083|consen 2 LLGDSCTGKTCLLIRFKDGAFLAGNFISTVGIDFRNKLIDMD-DKKVKLQIWDTAGQERFRSVTHAYYRDADALLLLYDI 80 (192)
T ss_pred ccccCccCceEEEEEeccCceecCceeeeeeeccccceeccC-CcEEEEEEeeccchHHHhhhhHhhhcccceeeeeeec
Confidence 38999999 444444443 56788999999999999999 9998 99999999999999999999999999999
Q ss_pred CChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCCCCCCCHHHHHHHHhhhC
Q psy15036 118 TNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQRCREVVTPDQIMFGSTQS 177 (179)
Q Consensus 118 t~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~~r~Vs~~e~~~~a~~~~ 177 (179)
+|+.||++++.|+.+|.++.... ..+.|+|||||+..+|.|..++++.+|+.-+
T Consensus 81 ankasfdn~~~wlsei~ey~k~~------v~l~llgnk~d~a~er~v~~ddg~kla~~y~ 134 (192)
T KOG0083|consen 81 ANKASFDNCQAWLSEIHEYAKEA------VALMLLGNKCDLAHERAVKRDDGEKLAEAYG 134 (192)
T ss_pred ccchhHHHHHHHHHHHHHHHHhh------HhHhhhccccccchhhccccchHHHHHHHHC
Confidence 99999999999999999998876 5677899999999999999999999998754
No 21
>cd04133 Rop_like Rop subfamily. The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,
Probab=99.95 E-value=5.2e-28 Score=183.18 Aligned_cols=125 Identities=17% Similarity=0.194 Sum_probs=108.3
Q ss_pred eEEE-EeCCCCc---eeEee-eccCCCcccCcceeeeeEEEEEecCCCee----eeCCCchhchhhhhhhhcCCcEEEEE
Q psy15036 44 FGTQ-LGRRGIP---LLKHL-KYLGTGTHGKTVGIVFPAISVTYSIGPRY----FRFPLVSRFLSLTTGLYRGTMGFLLI 114 (179)
Q Consensus 44 ~Kiv-lG~~gvG---~~~~~-~~~~~~~~~~Ti~~~~~~k~v~~~~~~~i----wDt~G~e~~~~~~~~~~~~~~~vilv 114 (179)
+||+ +|+.||| ++.++ .+.|.++|.||++..+ .+.+.++ +..+ |||+|+++|+.+++.|+++++++|+|
T Consensus 2 ~kivv~G~~~vGKTsli~~~~~~~f~~~~~~Ti~~~~-~~~~~~~-~~~v~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilv 79 (176)
T cd04133 2 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVSVD-GNTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLA 79 (176)
T ss_pred eEEEEECCCCCcHHHHHHHHhcCCCCCCCCCcceeee-EEEEEEC-CEEEEEEEEECCCCccccccchhhcCCCcEEEEE
Confidence 6898 9999999 44444 4778889999999766 4667777 7776 99999999999999999999999999
Q ss_pred EeCCChhhHHHH-HHHHHHHHHHhCCccCccccceEEEEeeCCCcCCCC----------CCCHHHHHHHHhhhC
Q psy15036 115 FDVTNENSFKDV-EKWLLQIKVMDGALFTHFELQIVFMRGCLELLQRCR----------EVVTPDQIMFGSTQS 177 (179)
Q Consensus 115 yDit~~~Sf~~l-~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~~r----------~Vs~~e~~~~a~~~~ 177 (179)
||+++++||+++ ..|+.++++..+. +|++|||||+||.++| .|+.+|++++|++..
T Consensus 80 yd~~~~~Sf~~~~~~w~~~i~~~~~~-------~piilvgnK~Dl~~~~~~~~~~~~~~~v~~~~~~~~a~~~~ 146 (176)
T cd04133 80 FSLISRASYENVLKKWVPELRHYAPN-------VPIVLVGTKLDLRDDKQYLADHPGASPITTAQGEELRKQIG 146 (176)
T ss_pred EEcCCHHHHHHHHHHHHHHHHHhCCC-------CCEEEEEeChhhccChhhhhhccCCCCCCHHHHHHHHHHcC
Confidence 999999999999 7899999876543 7899999999997654 599999999998765
No 22
>cd04131 Rnd Rnd subfamily. The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.95 E-value=9.5e-28 Score=181.95 Aligned_cols=127 Identities=17% Similarity=0.163 Sum_probs=110.2
Q ss_pred eeEEE-EeCCCCc---eeEeee-ccCCCcccCcceeeeeEEEEEecCCCee----eeCCCchhchhhhhhhhcCCcEEEE
Q psy15036 43 NFGTQ-LGRRGIP---LLKHLK-YLGTGTHGKTVGIVFPAISVTYSIGPRY----FRFPLVSRFLSLTTGLYRGTMGFLL 113 (179)
Q Consensus 43 ~~Kiv-lG~~gvG---~~~~~~-~~~~~~~~~Ti~~~~~~k~v~~~~~~~i----wDt~G~e~~~~~~~~~~~~~~~vil 113 (179)
.+||+ +|+.||| ++.++. +.|.+.|.||++..+ .+.+.++ +..+ |||+|+++|..+++.||++++++|+
T Consensus 1 ~~Kiv~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~-~~~~~~~-~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~~il 78 (178)
T cd04131 1 RCKIVVVGDVQCGKTALLQVFAKDCYPETYVPTVFENY-TASFEID-EQRIELSLWDTSGSPYYDNVRPLCYPDSDAVLI 78 (178)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCcCCCCcCCceEEEE-EEEEEEC-CEEEEEEEEECCCchhhhhcchhhcCCCCEEEE
Confidence 37898 9999999 555554 678889999998776 4678888 7776 9999999999999999999999999
Q ss_pred EEeCCChhhHHHH-HHHHHHHHHHhCCccCccccceEEEEeeCCCcCC------------CCCCCHHHHHHHHhhhCC
Q psy15036 114 IFDVTNENSFKDV-EKWLLQIKVMDGALFTHFELQIVFMRGCLELLQR------------CREVVTPDQIMFGSTQSS 178 (179)
Q Consensus 114 vyDit~~~Sf~~l-~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~------------~r~Vs~~e~~~~a~~~~~ 178 (179)
|||+++++||+++ ..|++++++..+. +|++|||||+||.+ +|.|+.+|++++|++.+.
T Consensus 79 vfdit~~~Sf~~~~~~w~~~i~~~~~~-------~~iilVgnK~DL~~~~~~~~~~~~~~~~~v~~~e~~~~a~~~~~ 149 (178)
T cd04131 79 CFDISRPETLDSVLKKWRGEIQEFCPN-------TKVLLVGCKTDLRTDLSTLMELSHQRQAPVSYEQGCAIAKQLGA 149 (178)
T ss_pred EEECCChhhHHHHHHHHHHHHHHHCCC-------CCEEEEEEChhhhcChhHHHHHHhcCCCCCCHHHHHHHHHHhCC
Confidence 9999999999996 8999999987654 68999999999964 467999999999998764
No 23
>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.95 E-value=1.9e-27 Score=187.27 Aligned_cols=129 Identities=15% Similarity=0.153 Sum_probs=111.9
Q ss_pred ceeeEEE-EeCCCCc---eeEee-eccCCCcccCcceeeeeEEEEEecCCCee----eeCCCchhchhhhhhhhcCCcEE
Q psy15036 41 SFNFGTQ-LGRRGIP---LLKHL-KYLGTGTHGKTVGIVFPAISVTYSIGPRY----FRFPLVSRFLSLTTGLYRGTMGF 111 (179)
Q Consensus 41 ~~~~Kiv-lG~~gvG---~~~~~-~~~~~~~~~~Ti~~~~~~k~v~~~~~~~i----wDt~G~e~~~~~~~~~~~~~~~v 111 (179)
...+||+ ||+.||| ++.++ .+.|.+.|.||++.++. +.+.++ +..+ |||+|+++|..+++.||++++++
T Consensus 11 ~~~~KIvvvGd~~VGKTsLi~r~~~~~F~~~y~pTi~~~~~-~~i~~~-~~~v~l~iwDTaG~e~~~~~~~~~~~~ad~v 88 (232)
T cd04174 11 VMRCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYT-AGLETE-EQRVELSLWDTSGSPYYDNVRPLCYSDSDAV 88 (232)
T ss_pred eeeEEEEEECCCCCcHHHHHHHHhcCCCCCCcCCceeeeeE-EEEEEC-CEEEEEEEEeCCCchhhHHHHHHHcCCCcEE
Confidence 4578998 9999999 55444 47788999999997774 567888 7776 99999999999999999999999
Q ss_pred EEEEeCCChhhHHHH-HHHHHHHHHHhCCccCccccceEEEEeeCCCcCC------------CCCCCHHHHHHHHhhhCC
Q psy15036 112 LLIFDVTNENSFKDV-EKWLLQIKVMDGALFTHFELQIVFMRGCLELLQR------------CREVVTPDQIMFGSTQSS 178 (179)
Q Consensus 112 ilvyDit~~~Sf~~l-~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~------------~r~Vs~~e~~~~a~~~~~ 178 (179)
|+|||+++++||+++ ..|++++++..+. .|+||||||+||.+ +|.|+.+|+++||++++.
T Consensus 89 IlVyDit~~~Sf~~~~~~w~~~i~~~~~~-------~piilVgNK~DL~~~~~~~~~l~~~~~~~Vs~~e~~~~a~~~~~ 161 (232)
T cd04174 89 LLCFDISRPETVDSALKKWKAEIMDYCPS-------TRILLIGCKTDLRTDLSTLMELSNQKQAPISYEQGCALAKQLGA 161 (232)
T ss_pred EEEEECCChHHHHHHHHHHHHHHHHhCCC-------CCEEEEEECcccccccchhhhhccccCCcCCHHHHHHHHHHcCC
Confidence 999999999999985 8999999886643 68899999999964 478999999999998764
No 24
>cd01875 RhoG RhoG subfamily. RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin
Probab=99.95 E-value=5.7e-27 Score=179.34 Aligned_cols=126 Identities=14% Similarity=0.131 Sum_probs=107.2
Q ss_pred eeEEE-EeCCCCc---eeEeee-ccCCCcccCcceeeeeEEEEEecCCCee----eeCCCchhchhhhhhhhcCCcEEEE
Q psy15036 43 NFGTQ-LGRRGIP---LLKHLK-YLGTGTHGKTVGIVFPAISVTYSIGPRY----FRFPLVSRFLSLTTGLYRGTMGFLL 113 (179)
Q Consensus 43 ~~Kiv-lG~~gvG---~~~~~~-~~~~~~~~~Ti~~~~~~k~v~~~~~~~i----wDt~G~e~~~~~~~~~~~~~~~vil 113 (179)
.+||+ +|++||| ++.++. +.|.+.|.||++..+ .+.+.++ +..+ |||+|+++|+.+++.||+++|++|+
T Consensus 3 ~~ki~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~-~~~~~~~-~~~~~l~i~Dt~G~e~~~~l~~~~~~~a~~~il 80 (191)
T cd01875 3 SIKCVVVGDGAVGKTCLLICYTTNAFPKEYIPTVFDNY-SAQTAVD-GRTVSLNLWDTAGQEEYDRLRTLSYPQTNVFII 80 (191)
T ss_pred cEEEEEECCCCCCHHHHHHHHHhCCCCcCCCCceEeee-EEEEEEC-CEEEEEEEEECCCchhhhhhhhhhccCCCEEEE
Confidence 48998 9999999 554444 778889999999665 4566777 7766 9999999999999999999999999
Q ss_pred EEeCCChhhHHHHH-HHHHHHHHHhCCccCccccceEEEEeeCCCcCCC------------CCCCHHHHHHHHhhhC
Q psy15036 114 IFDVTNENSFKDVE-KWLLQIKVMDGALFTHFELQIVFMRGCLELLQRC------------REVVTPDQIMFGSTQS 177 (179)
Q Consensus 114 vyDit~~~Sf~~l~-~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~~------------r~Vs~~e~~~~a~~~~ 177 (179)
|||+++++||+++. .|++++.+..+. +|++|||||+||.+. +.|+.++++++|++.+
T Consensus 81 vydit~~~Sf~~~~~~w~~~i~~~~~~-------~piilvgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~ 150 (191)
T cd01875 81 CFSIASPSSYENVRHKWHPEVCHHCPN-------VPILLVGTKKDLRNDADTLKKLKEQGQAPITPQQGGALAKQIH 150 (191)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhhCCC-------CCEEEEEeChhhhcChhhHHHHhhccCCCCCHHHHHHHHHHcC
Confidence 99999999999996 699988765433 689999999999765 4589999999998765
No 25
>PLN00023 GTP-binding protein; Provisional
Probab=99.94 E-value=1.7e-26 Score=188.11 Aligned_cols=139 Identities=12% Similarity=0.131 Sum_probs=112.4
Q ss_pred CceeeEEE-EeCCCCc---eeEeee-ccCCCcccCcceeeeeEEEEEecCC-------------Cee----eeCCCchhc
Q psy15036 40 FSFNFGTQ-LGRRGIP---LLKHLK-YLGTGTHGKTVGIVFPAISVTYSIG-------------PRY----FRFPLVSRF 97 (179)
Q Consensus 40 ~~~~~Kiv-lG~~gvG---~~~~~~-~~~~~~~~~Ti~~~~~~k~v~~~~~-------------~~i----wDt~G~e~~ 97 (179)
....+||+ +|+.||| +++++. +.+...+.+|+|.++..+.+.++ + ..+ ||++|+++|
T Consensus 18 ~~~~iKIVLLGdsGVGKTSLI~rf~~g~F~~~~~pTIG~d~~ik~I~~~-~~~~~~~~ik~d~~k~v~LqIWDTAGqErf 96 (334)
T PLN00023 18 PCGQVRVLVVGDSGVGKSSLVHLIVKGSSIARPPQTIGCTVGVKHITYG-SPGSSSNSIKGDSERDFFVELWDVSGHERY 96 (334)
T ss_pred CccceEEEEECCCCCcHHHHHHHHhcCCcccccCCceeeeEEEEEEEEC-CcccccccccccCCceEEEEEEECCCChhh
Confidence 34579998 9999999 665555 66788899999999887878775 3 233 999999999
Q ss_pred hhhhhhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHhCCcc------CccccceEEEEeeCCCcCCCC---C---CC
Q psy15036 98 LSLTTGLYRGTMGFLLIFDVTNENSFKDVEKWLLQIKVMDGALF------THFELQIVFMRGCLELLQRCR---E---VV 165 (179)
Q Consensus 98 ~~~~~~~~~~~~~vilvyDit~~~Sf~~l~~w~~~i~~~~~~~~------~~~~~~~iilvGnK~Dl~~~r---~---Vs 165 (179)
+.+++.||++++++|+|||+++++||+++..|++++.+...... +....+|++|||||+||..++ . +.
T Consensus 97 rsL~~~yyr~AdgiILVyDITdr~SFenL~kWl~eI~~~~~~s~p~~s~~~~~~~ipIILVGNK~DL~~~~~~r~~s~~~ 176 (334)
T PLN00023 97 KDCRSLFYSQINGVIFVHDLSQRRTKTSLQKWASEVAATGTFSAPLGSGGPGGLPVPYIVIGNKADIAPKEGTRGSSGNL 176 (334)
T ss_pred hhhhHHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcccccccccccccCCCCcEEEEEECcccccccccccccccc
Confidence 99999999999999999999999999999999999987642100 000126899999999997653 3 46
Q ss_pred HHHHHHHHhhhCCC
Q psy15036 166 TPDQIMFGSTQSSL 179 (179)
Q Consensus 166 ~~e~~~~a~~~~~~ 179 (179)
.+++++||++++.+
T Consensus 177 ~e~a~~~A~~~g~l 190 (334)
T PLN00023 177 VDAARQWVEKQGLL 190 (334)
T ss_pred HHHHHHHHHHcCCC
Confidence 89999999998753
No 26
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=99.94 E-value=2.5e-26 Score=171.27 Aligned_cols=129 Identities=21% Similarity=0.433 Sum_probs=113.1
Q ss_pred eeeEEE-EeCCCCc---eeEeee-ccCCCcccCcceeeeeEEEEEecCCCee----eeCCCchhchhhhhhhhcCCcEEE
Q psy15036 42 FNFGTQ-LGRRGIP---LLKHLK-YLGTGTHGKTVGIVFPAISVTYSIGPRY----FRFPLVSRFLSLTTGLYRGTMGFL 112 (179)
Q Consensus 42 ~~~Kiv-lG~~gvG---~~~~~~-~~~~~~~~~Ti~~~~~~k~v~~~~~~~i----wDt~G~e~~~~~~~~~~~~~~~vi 112 (179)
+.+||+ +|++||| ++.++. ..+...+.+|++.++..+.+.++ +..+ ||++|+++|..++..++++++++|
T Consensus 1 ~~~ki~iiG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~-~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i 79 (166)
T cd04122 1 YIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVN-GQKIKLQIWDTAGQERFRAVTRSYYRGAAGAL 79 (166)
T ss_pred CceEEEEECCCCCCHHHHHHHHhcCCCCCCCCcccceeEEEEEEEEC-CEEEEEEEEECCCcHHHHHHHHHHhcCCCEEE
Confidence 358998 9999999 555555 56778888999999887888888 7665 999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCCCCCCCHHHHHHHHhhhC
Q psy15036 113 LIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQRCREVVTPDQIMFGSTQS 177 (179)
Q Consensus 113 lvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~~r~Vs~~e~~~~a~~~~ 177 (179)
+|||+++++||+++..|+++++.....+ .|+++||||+|+.+++.++.++++++|++..
T Consensus 80 lv~d~~~~~s~~~~~~~~~~~~~~~~~~------~~iiiv~nK~Dl~~~~~~~~~~~~~~~~~~~ 138 (166)
T cd04122 80 MVYDITRRSTYNHLSSWLTDARNLTNPN------TVIFLIGNKADLEAQRDVTYEEAKQFADENG 138 (166)
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhCCCC------CeEEEEEECcccccccCcCHHHHHHHHHHcC
Confidence 9999999999999999999998765444 6899999999999999999999999998754
No 27
>cd04102 RabL3 RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.
Probab=99.94 E-value=1.9e-26 Score=178.23 Aligned_cols=134 Identities=16% Similarity=0.136 Sum_probs=106.0
Q ss_pred eEEE-EeCCCCc---eeEeee-ccCCCcccCcceeeeeEEEEEecC----CCee----eeCCCchhchhhhhhhhcCCcE
Q psy15036 44 FGTQ-LGRRGIP---LLKHLK-YLGTGTHGKTVGIVFPAISVTYSI----GPRY----FRFPLVSRFLSLTTGLYRGTMG 110 (179)
Q Consensus 44 ~Kiv-lG~~gvG---~~~~~~-~~~~~~~~~Ti~~~~~~k~v~~~~----~~~i----wDt~G~e~~~~~~~~~~~~~~~ 110 (179)
+||+ +|++||| ++.++. +.|.+.+.||+|.++..+.+.++. +..+ ||++|+++|..+++.||+++++
T Consensus 1 vKIvlvGd~gVGKTSLi~~~~~~~f~~~~~~Tig~~~~~k~~~~~~~~~~~~~~~l~IwDtaG~e~~~~l~~~~yr~ad~ 80 (202)
T cd04102 1 VRVLVVGDSGVGKSSLVHLICKNQVLGRPSWTVGCSVDVKHHTYKEGTPEEKTFFVELWDVGGSESVKSTRAVFYNQVNG 80 (202)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCCCCcceeeeEEEEEEEEcCCCCCCcEEEEEEEecCCchhHHHHHHHHhCcCCE
Confidence 4887 9999999 555554 667888999999888877777741 3444 9999999999999999999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHHHhCCcc-------------CccccceEEEEeeCCCcCCCCCCCHHH----HHHHH
Q psy15036 111 FLLIFDVTNENSFKDVEKWLLQIKVMDGALF-------------THFELQIVFMRGCLELLQRCREVVTPD----QIMFG 173 (179)
Q Consensus 111 vilvyDit~~~Sf~~l~~w~~~i~~~~~~~~-------------~~~~~~~iilvGnK~Dl~~~r~Vs~~e----~~~~a 173 (179)
+|+|||+++++||+++..|++++.+...... ...+..|++|||||+||.++|.++.++ +..+|
T Consensus 81 iIlVyDvtn~~Sf~~l~~W~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~PiilVGnK~Dl~~~r~~~~~~~~~~~~~ia 160 (202)
T cd04102 81 IILVHDLTNRKSSQNLQRWSLEALNKDTFPTGLLVTNGDYDSEQFGGNQIPLLVIGTKLDQIPEKESSGNLVLTARGFVA 160 (202)
T ss_pred EEEEEECcChHHHHHHHHHHHHHHHhhccccccccccccccccccCCCCceEEEEEECccchhhcccchHHHhhHhhhHH
Confidence 9999999999999999999999986532100 001237899999999998888888774 44455
Q ss_pred hhhC
Q psy15036 174 STQS 177 (179)
Q Consensus 174 ~~~~ 177 (179)
++.+
T Consensus 161 ~~~~ 164 (202)
T cd04102 161 EQGN 164 (202)
T ss_pred HhcC
Confidence 5544
No 28
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=99.94 E-value=2.7e-26 Score=169.82 Aligned_cols=126 Identities=25% Similarity=0.319 Sum_probs=115.5
Q ss_pred EEE-EeCCCCc---eeEeee-ccCCCcccCcceeeeeEEEEEecCCCee----eeCCCchhchhhhhhhhcCCcEEEEEE
Q psy15036 45 GTQ-LGRRGIP---LLKHLK-YLGTGTHGKTVGIVFPAISVTYSIGPRY----FRFPLVSRFLSLTTGLYRGTMGFLLIF 115 (179)
Q Consensus 45 Kiv-lG~~gvG---~~~~~~-~~~~~~~~~Ti~~~~~~k~v~~~~~~~i----wDt~G~e~~~~~~~~~~~~~~~vilvy 115 (179)
||+ +|+.+|| +++.+. ..+.+.+.+|+|.+...+.+.++ +..+ ||++|+++|..++..++++++++|+||
T Consensus 1 Ki~vvG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~-~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ii~f 79 (162)
T PF00071_consen 1 KIVVVGDSGVGKTSLINRLINGEFPENYIPTIGIDSYSKEVSID-GKPVNLEIWDTSGQERFDSLRDIFYRNSDAIIIVF 79 (162)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSSTTSSSETTSSEEEEEEEEEET-TEEEEEEEEEETTSGGGHHHHHHHHTTESEEEEEE
T ss_pred CEEEECCCCCCHHHHHHHHHhhcccccccccccccccccccccc-ccccccccccccccccccccccccccccccccccc
Confidence 787 9999999 555555 66889999999999998999998 8887 999999999999999999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCCCCCCCHHHHHHHHhhhC
Q psy15036 116 DVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQRCREVVTPDQIMFGSTQS 177 (179)
Q Consensus 116 Dit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~~r~Vs~~e~~~~a~~~~ 177 (179)
|+++++||+++..|++.+....+.+ +|++|||||+|+.++|+|+.++++++|+++.
T Consensus 80 d~~~~~S~~~~~~~~~~i~~~~~~~------~~iivvg~K~D~~~~~~v~~~~~~~~~~~~~ 135 (162)
T PF00071_consen 80 DVTDEESFENLKKWLEEIQKYKPED------IPIIVVGNKSDLSDEREVSVEEAQEFAKELG 135 (162)
T ss_dssp ETTBHHHHHTHHHHHHHHHHHSTTT------SEEEEEEETTTGGGGSSSCHHHHHHHHHHTT
T ss_pred ccccccccccccccccccccccccc------ccceeeeccccccccccchhhHHHHHHHHhC
Confidence 9999999999999999999988754 7999999999999999999999999999875
No 29
>KOG0395|consensus
Probab=99.93 E-value=1.6e-25 Score=172.19 Aligned_cols=129 Identities=19% Similarity=0.202 Sum_probs=116.6
Q ss_pred eeEEE-EeCCCCc----eeEeeeccCCCcccCcceeeeeEEEEEecCCCee----eeCCCchhchhhhhhhhcCCcEEEE
Q psy15036 43 NFGTQ-LGRRGIP----LLKHLKYLGTGTHGKTVGIVFPAISVTYSIGPRY----FRFPLVSRFLSLTTGLYRGTMGFLL 113 (179)
Q Consensus 43 ~~Kiv-lG~~gvG----~~~~~~~~~~~~~~~Ti~~~~~~k~v~~~~~~~i----wDt~G~e~~~~~~~~~~~~~~~vil 113 (179)
.+||+ +|.+||| .++++...|.+.|.||++ +.+.+.+.++ +..+ +||+|+++|..+...|++.+||+++
T Consensus 3 ~~kvvvlG~~gVGKSal~~qf~~~~f~~~y~ptie-d~y~k~~~v~-~~~~~l~ilDt~g~~~~~~~~~~~~~~~~gF~l 80 (196)
T KOG0395|consen 3 EYKVVVLGAGGVGKSALTIQFLTGRFVEDYDPTIE-DSYRKELTVD-GEVCMLEILDTAGQEEFSAMRDLYIRNGDGFLL 80 (196)
T ss_pred ceEEEEECCCCCCcchheeeecccccccccCCCcc-ccceEEEEEC-CEEEEEEEEcCCCcccChHHHHHhhccCcEEEE
Confidence 68997 9999999 667777999999999999 6667999999 8887 9999999999999999999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCCCCCCCHHHHHHHHhhhCC
Q psy15036 114 IFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQRCREVVTPDQIMFGSTQSS 178 (179)
Q Consensus 114 vyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~~r~Vs~~e~~~~a~~~~~ 178 (179)
||+++++.||+.++.+++++.+..... ..|++|||||+||.++|+|+.+|++++|....+
T Consensus 81 Vysitd~~SF~~~~~l~~~I~r~~~~~-----~~PivlVGNK~Dl~~~R~V~~eeg~~la~~~~~ 140 (196)
T KOG0395|consen 81 VYSITDRSSFEEAKQLREQILRVKGRD-----DVPIILVGNKCDLERERQVSEEEGKALARSWGC 140 (196)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhhCcC-----CCCEEEEEEcccchhccccCHHHHHHHHHhcCC
Confidence 999999999999999999996655543 169999999999999999999999999988764
No 30
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=99.93 E-value=1.7e-25 Score=166.39 Aligned_cols=127 Identities=19% Similarity=0.326 Sum_probs=111.6
Q ss_pred eEEE-EeCCCCc---eeEee-eccCCCcccCcceeeeeEEEEEecCCCee----eeCCCchhchhhhhhhhcCCcEEEEE
Q psy15036 44 FGTQ-LGRRGIP---LLKHL-KYLGTGTHGKTVGIVFPAISVTYSIGPRY----FRFPLVSRFLSLTTGLYRGTMGFLLI 114 (179)
Q Consensus 44 ~Kiv-lG~~gvG---~~~~~-~~~~~~~~~~Ti~~~~~~k~v~~~~~~~i----wDt~G~e~~~~~~~~~~~~~~~vilv 114 (179)
+||+ +|++||| ++.++ ...+.+.+.||++.++..+.+.++ +..+ ||++|+++|..+.+.+++++|++++|
T Consensus 1 ~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~-~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~i~v 79 (161)
T cd04117 1 FRLLLIGDSGVGKTCLLCRFTDNEFHSSHISTIGVDFKMKTIEVD-GIKVRIQIWDTAGQERYQTITKQYYRRAQGIFLV 79 (161)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEEC-CEEEEEEEEeCCCcHhHHhhHHHHhcCCcEEEEE
Confidence 5887 9999999 55444 466788899999998887888888 7654 99999999999999999999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCCCCCCCHHHHHHHHhhhC
Q psy15036 115 FDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQRCREVVTPDQIMFGSTQS 177 (179)
Q Consensus 115 yDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~~r~Vs~~e~~~~a~~~~ 177 (179)
||+++++||+.+..|++++.+....+ .|+++||||.||.++|.++.+++..+|+...
T Consensus 80 ~d~~~~~sf~~~~~~~~~~~~~~~~~------~~iilvgnK~Dl~~~~~v~~~~~~~~~~~~~ 136 (161)
T cd04117 80 YDISSERSYQHIMKWVSDVDEYAPEG------VQKILIGNKADEEQKRQVGDEQGNKLAKEYG 136 (161)
T ss_pred EECCCHHHHHHHHHHHHHHHHhCCCC------CeEEEEEECcccccccCCCHHHHHHHHHHcC
Confidence 99999999999999999998776544 7899999999999999999999999998654
No 31
>cd01874 Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi
Probab=99.93 E-value=1.3e-25 Score=169.62 Aligned_cols=126 Identities=19% Similarity=0.198 Sum_probs=106.9
Q ss_pred eeEEE-EeCCCCc---eeEeee-ccCCCcccCcceeeeeEEEEEecCCCee----eeCCCchhchhhhhhhhcCCcEEEE
Q psy15036 43 NFGTQ-LGRRGIP---LLKHLK-YLGTGTHGKTVGIVFPAISVTYSIGPRY----FRFPLVSRFLSLTTGLYRGTMGFLL 113 (179)
Q Consensus 43 ~~Kiv-lG~~gvG---~~~~~~-~~~~~~~~~Ti~~~~~~k~v~~~~~~~i----wDt~G~e~~~~~~~~~~~~~~~vil 113 (179)
++||+ +|+.||| ++.++. +.|.+.|.||++..+. +.+.++ +..+ ||++|+++|..++..++++++++|+
T Consensus 1 ~~ki~vvG~~~vGKTsl~~~~~~~~f~~~~~pt~~~~~~-~~~~~~-~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~~il 78 (175)
T cd01874 1 TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYA-VTVMIG-GEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLV 78 (175)
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeE-EEEEEC-CEEEEEEEEECCCccchhhhhhhhcccCCEEEE
Confidence 47998 9999999 554544 6788899999997664 557777 7665 9999999999999999999999999
Q ss_pred EEeCCChhhHHHHH-HHHHHHHHHhCCccCccccceEEEEeeCCCcCCC------------CCCCHHHHHHHHhhhC
Q psy15036 114 IFDVTNENSFKDVE-KWLLQIKVMDGALFTHFELQIVFMRGCLELLQRC------------REVVTPDQIMFGSTQS 177 (179)
Q Consensus 114 vyDit~~~Sf~~l~-~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~~------------r~Vs~~e~~~~a~~~~ 177 (179)
|||+++++||+++. .|+.++++..+. .|++|||||+|+.++ |.|+.+++.++|++..
T Consensus 79 v~d~~~~~s~~~~~~~w~~~i~~~~~~-------~piilvgnK~Dl~~~~~~~~~l~~~~~~~v~~~~~~~~a~~~~ 148 (175)
T cd01874 79 CFSVVSPSSFENVKEKWVPEITHHCPK-------TPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETGEKLARDLK 148 (175)
T ss_pred EEECCCHHHHHHHHHHHHHHHHHhCCC-------CCEEEEEECHhhhhChhhHHHhhhccCCCcCHHHHHHHHHHhC
Confidence 99999999999996 699998876533 688999999999653 7899999999998754
No 32
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=99.93 E-value=3.4e-25 Score=166.89 Aligned_cols=132 Identities=30% Similarity=0.414 Sum_probs=111.6
Q ss_pred ceeeEEE-EeCCCCc---eeEeee-ccCCCcccCcceeeeeEEEEEecC---------CCee----eeCCCchhchhhhh
Q psy15036 41 SFNFGTQ-LGRRGIP---LLKHLK-YLGTGTHGKTVGIVFPAISVTYSI---------GPRY----FRFPLVSRFLSLTT 102 (179)
Q Consensus 41 ~~~~Kiv-lG~~gvG---~~~~~~-~~~~~~~~~Ti~~~~~~k~v~~~~---------~~~i----wDt~G~e~~~~~~~ 102 (179)
++.+||+ +|++||| ++.++. ..+.+.+.+|++.++..+.+.+.+ +..+ ||++|+++|..++.
T Consensus 2 ~~~~ki~ivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~ 81 (180)
T cd04127 2 DYLIKFLALGDSGVGKTSFLYQYTDNKFNPKFITTVGIDFREKRVVYNSSGPGGTLGRGQRIHLQLWDTAGQERFRSLTT 81 (180)
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceEEEEEEEEEcCccccccccCCCEEEEEEEeCCChHHHHHHHH
Confidence 4689998 9999999 555554 668888999999988777676641 1223 99999999999999
Q ss_pred hhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCCCCCCCHHHHHHHHhhhC
Q psy15036 103 GLYRGTMGFLLIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQRCREVVTPDQIMFGSTQS 177 (179)
Q Consensus 103 ~~~~~~~~vilvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~~r~Vs~~e~~~~a~~~~ 177 (179)
.+++++|++++|||+++++||.++..|+.++.+..... .+|+++||||+|+.+.|.++.+++.++|++..
T Consensus 82 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~-----~~piiiv~nK~Dl~~~~~v~~~~~~~~~~~~~ 151 (180)
T cd04127 82 AFFRDAMGFLLIFDLTNEQSFLNVRNWMSQLQTHAYCE-----NPDIVLCGNKADLEDQRQVSEEQAKALADKYG 151 (180)
T ss_pred HHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCC-----CCcEEEEEeCccchhcCccCHHHHHHHHHHcC
Confidence 99999999999999999999999999999998764321 17899999999999889999999999998764
No 33
>PLN03110 Rab GTPase; Provisional
Probab=99.93 E-value=5.8e-25 Score=171.39 Aligned_cols=132 Identities=22% Similarity=0.455 Sum_probs=116.3
Q ss_pred cCceeeEEE-EeCCCCc---eeEeee-ccCCCcccCcceeeeeEEEEEecCCCee----eeCCCchhchhhhhhhhcCCc
Q psy15036 39 EFSFNFGTQ-LGRRGIP---LLKHLK-YLGTGTHGKTVGIVFPAISVTYSIGPRY----FRFPLVSRFLSLTTGLYRGTM 109 (179)
Q Consensus 39 ~~~~~~Kiv-lG~~gvG---~~~~~~-~~~~~~~~~Ti~~~~~~k~v~~~~~~~i----wDt~G~e~~~~~~~~~~~~~~ 109 (179)
++++.+||+ +|++||| ++.++. ..+...+.+|+|.++..+.+.++ +..+ ||++|+++|..+...++++++
T Consensus 8 ~~~~~~Ki~ivG~~~vGKStLi~~l~~~~~~~~~~~t~g~~~~~~~v~~~-~~~~~l~l~Dt~G~~~~~~~~~~~~~~~~ 86 (216)
T PLN03110 8 EYDYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVE-GKTVKAQIWDTAGQERYRAITSAYYRGAV 86 (216)
T ss_pred ccCceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEEC-CEEEEEEEEECCCcHHHHHHHHHHhCCCC
Confidence 466889998 9999999 555554 55667888999999988889888 7655 999999999999999999999
Q ss_pred EEEEEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCCCCCCCHHHHHHHHhhhC
Q psy15036 110 GFLLIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQRCREVVTPDQIMFGSTQS 177 (179)
Q Consensus 110 ~vilvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~~r~Vs~~e~~~~a~~~~ 177 (179)
++|+|||+++++||+++..|+..+++....+ .|+++||||+||.++|.++.++++.+++...
T Consensus 87 ~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~------~piiiv~nK~Dl~~~~~~~~~~~~~l~~~~~ 148 (216)
T PLN03110 87 GALLVYDITKRQTFDNVQRWLRELRDHADSN------IVIMMAGNKSDLNHLRSVAEEDGQALAEKEG 148 (216)
T ss_pred EEEEEEECCChHHHHHHHHHHHHHHHhCCCC------CeEEEEEEChhcccccCCCHHHHHHHHHHcC
Confidence 9999999999999999999999998876554 7899999999999999999999999987653
No 34
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=99.93 E-value=5.6e-25 Score=164.18 Aligned_cols=130 Identities=23% Similarity=0.397 Sum_probs=114.4
Q ss_pred ceeeEEE-EeCCCCc---eeEeee-ccCCCcccCcceeeeeEEEEEecCCCee----eeCCCchhchhhhhhhhcCCcEE
Q psy15036 41 SFNFGTQ-LGRRGIP---LLKHLK-YLGTGTHGKTVGIVFPAISVTYSIGPRY----FRFPLVSRFLSLTTGLYRGTMGF 111 (179)
Q Consensus 41 ~~~~Kiv-lG~~gvG---~~~~~~-~~~~~~~~~Ti~~~~~~k~v~~~~~~~i----wDt~G~e~~~~~~~~~~~~~~~v 111 (179)
++.+||+ +|++||| ++.++. ..+.+.+.||++.++..+.+.++ +..+ ||++|+++|..++..+++++|++
T Consensus 1 ~~~~ki~vvG~~~~GKSsl~~~~~~~~f~~~~~~t~~~~~~~~~~~~~-~~~~~l~l~D~~g~~~~~~~~~~~~~~ad~~ 79 (167)
T cd01867 1 DYLFKLLLIGDSGVGKSCLLLRFSEDSFNPSFISTIGIDFKIRTIELD-GKKIKLQIWDTAGQERFRTITTAYYRGAMGI 79 (167)
T ss_pred CcceEEEEECCCCCCHHHHHHHHhhCcCCcccccCccceEEEEEEEEC-CEEEEEEEEeCCchHHHHHHHHHHhCCCCEE
Confidence 4689998 9999999 555555 66788999999998887888888 7655 99999999999999999999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCCCCCCCHHHHHHHHhhhC
Q psy15036 112 LLIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQRCREVVTPDQIMFGSTQS 177 (179)
Q Consensus 112 ilvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~~r~Vs~~e~~~~a~~~~ 177 (179)
++|||+++++||+.+..|+..+.+....+ .|+++||||+|+.+.+.++.+++.++|+++.
T Consensus 80 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~------~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~ 139 (167)
T cd01867 80 ILVYDITDEKSFENIRNWMRNIEEHASED------VERMLVGNKCDMEEKRVVSKEEGEALADEYG 139 (167)
T ss_pred EEEEECcCHHHHHhHHHHHHHHHHhCCCC------CcEEEEEECcccccccCCCHHHHHHHHHHcC
Confidence 99999999999999999999998875544 6889999999999888999999999998754
No 35
>cd04128 Spg1 Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are
Probab=99.93 E-value=3.5e-25 Score=168.41 Aligned_cols=126 Identities=15% Similarity=0.245 Sum_probs=105.3
Q ss_pred eEEE-EeCCCCc---eeEee-eccCCCcccCcceeeeeEEEEEecCCCee----eeCCCchhchhhhhhhhcCCcEEEEE
Q psy15036 44 FGTQ-LGRRGIP---LLKHL-KYLGTGTHGKTVGIVFPAISVTYSIGPRY----FRFPLVSRFLSLTTGLYRGTMGFLLI 114 (179)
Q Consensus 44 ~Kiv-lG~~gvG---~~~~~-~~~~~~~~~~Ti~~~~~~k~v~~~~~~~i----wDt~G~e~~~~~~~~~~~~~~~vilv 114 (179)
+||+ +|++||| ++.++ .+.|.+.|.||+|.++..+.+.++ +..+ ||++|+++|..+++.++++++++++|
T Consensus 1 ~Ki~vlG~~~vGKTsLi~~~~~~~f~~~~~~T~g~~~~~~~i~~~-~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~iilv 79 (182)
T cd04128 1 LKIGLLGDAQIGKTSLMVKYVEGEFDEDYIQTLGVNFMEKTISIR-GTEITFSIWDLGGQREFINMLPLVCNDAVAILFM 79 (182)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEEC-CEEEEEEEEeCCCchhHHHhhHHHCcCCCEEEEE
Confidence 5887 9999999 55555 467888899999999988889888 8766 99999999999999999999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCC-----CCCCCHHHHHHHHhhhC
Q psy15036 115 FDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQR-----CREVVTPDQIMFGSTQS 177 (179)
Q Consensus 115 yDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~-----~r~Vs~~e~~~~a~~~~ 177 (179)
||+++++||+++..|+.++++..+.. +| ||||||+||.. ++.+..+++.++|+...
T Consensus 80 ~D~t~~~s~~~i~~~~~~~~~~~~~~------~p-ilVgnK~Dl~~~~~~~~~~~~~~~~~~~a~~~~ 140 (182)
T cd04128 80 FDLTRKSTLNSIKEWYRQARGFNKTA------IP-ILVGTKYDLFADLPPEEQEEITKQARKYAKAMK 140 (182)
T ss_pred EECcCHHHHHHHHHHHHHHHHhCCCC------CE-EEEEEchhccccccchhhhhhHHHHHHHHHHcC
Confidence 99999999999999999998775543 56 67899999942 22233578888887654
No 36
>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma
Probab=99.93 E-value=4.6e-25 Score=172.70 Aligned_cols=126 Identities=17% Similarity=0.180 Sum_probs=106.8
Q ss_pred eEEE-EeCCCCc---eeEee-eccCCCcccCcceeeeeEEEEEecCCCee----eeCCCchhchhhhhhhhcCCcEEEEE
Q psy15036 44 FGTQ-LGRRGIP---LLKHL-KYLGTGTHGKTVGIVFPAISVTYSIGPRY----FRFPLVSRFLSLTTGLYRGTMGFLLI 114 (179)
Q Consensus 44 ~Kiv-lG~~gvG---~~~~~-~~~~~~~~~~Ti~~~~~~k~v~~~~~~~i----wDt~G~e~~~~~~~~~~~~~~~vilv 114 (179)
+||+ ||+.||| ++.++ ...|.+.|.||++.++. +.+.++ +..+ |||+|+++|..+++.+|+++|++|+|
T Consensus 2 ~KIvvvGd~~vGKTsLi~~~~~~~f~~~y~pTi~~~~~-~~~~~~-~~~v~L~iwDt~G~e~~~~l~~~~~~~~d~illv 79 (222)
T cd04173 2 CKIVVVGDAECGKTALLQVFAKDAYPGSYVPTVFENYT-ASFEID-KRRIELNMWDTSGSSYYDNVRPLAYPDSDAVLIC 79 (222)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCccCCccccceE-EEEEEC-CEEEEEEEEeCCCcHHHHHHhHHhccCCCEEEEE
Confidence 6897 9999999 55444 46788899999987764 677888 7776 99999999999999999999999999
Q ss_pred EeCCChhhHHHH-HHHHHHHHHHhCCccCccccceEEEEeeCCCcCCC------------CCCCHHHHHHHHhhhCC
Q psy15036 115 FDVTNENSFKDV-EKWLLQIKVMDGALFTHFELQIVFMRGCLELLQRC------------REVVTPDQIMFGSTQSS 178 (179)
Q Consensus 115 yDit~~~Sf~~l-~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~~------------r~Vs~~e~~~~a~~~~~ 178 (179)
||+++++||+++ ..|..+++...+. .|+||||||+||.+. ..|+.+++..+|++.++
T Consensus 80 fdis~~~Sf~~i~~~w~~~~~~~~~~-------~piiLVgnK~DL~~~~~~~~~~~~~~~~pIs~e~g~~~ak~~~~ 149 (222)
T cd04173 80 FDISRPETLDSVLKKWQGETQEFCPN-------AKVVLVGCKLDMRTDLATLRELSKQRLIPVTHEQGTVLAKQVGA 149 (222)
T ss_pred EECCCHHHHHHHHHHHHHHHHhhCCC-------CCEEEEEECcccccchhhhhhhhhccCCccCHHHHHHHHHHcCC
Confidence 999999999999 5788887765543 689999999999652 24899999999998763
No 37
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.93 E-value=7.1e-25 Score=168.73 Aligned_cols=132 Identities=18% Similarity=0.237 Sum_probs=109.7
Q ss_pred eEEE-EeCCCCc---eeEeee-ccCCCcccCcceeeeeEEEEEecCCCee----eeCCCchhchhhhhhhhcCCcEEEEE
Q psy15036 44 FGTQ-LGRRGIP---LLKHLK-YLGTGTHGKTVGIVFPAISVTYSIGPRY----FRFPLVSRFLSLTTGLYRGTMGFLLI 114 (179)
Q Consensus 44 ~Kiv-lG~~gvG---~~~~~~-~~~~~~~~~Ti~~~~~~k~v~~~~~~~i----wDt~G~e~~~~~~~~~~~~~~~vilv 114 (179)
+||+ +|++||| +++++. ..+...+.||++.++..+.+.++++..+ ||++|+++|..+++.||++++++|+|
T Consensus 1 ~KivivG~~~vGKTsli~~l~~~~~~~~~~~t~~~d~~~~~v~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~a~~~ilv 80 (201)
T cd04107 1 LKVLVIGDLGVGKTSIIKRYVHGIFSQHYKATIGVDFALKVIEWDPNTVVRLQLWDIAGQERFGGMTRVYYRGAVGAIIV 80 (201)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCCCEEEEEEEECCCchhhhhhHHHHhCCCCEEEEE
Confidence 5897 9999999 555554 6677889999999988777777524444 99999999999999999999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCCCCCCCHHHHHHHHhhhC
Q psy15036 115 FDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQRCREVVTPDQIMFGSTQS 177 (179)
Q Consensus 115 yDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~~r~Vs~~e~~~~a~~~~ 177 (179)
||+++++||+++..|+.++....... .....|++|||||+|+.+++.++.+++.+++++.+
T Consensus 81 ~D~t~~~s~~~~~~~~~~i~~~~~~~--~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~ 141 (201)
T cd04107 81 FDVTRPSTFEAVLKWKADLDSKVTLP--NGEPIPCLLLANKCDLKKRLAKDGEQMDQFCKENG 141 (201)
T ss_pred EECCCHHHHHHHHHHHHHHHHhhccc--CCCCCcEEEEEECCCcccccccCHHHHHHHHHHcC
Confidence 99999999999999999987643210 00126889999999998788999999999998765
No 38
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=99.93 E-value=5.3e-25 Score=165.74 Aligned_cols=127 Identities=15% Similarity=0.183 Sum_probs=108.7
Q ss_pred eeEEE-EeCCCCc---eeEee-eccCCCcccCcceeeeeEEEEEecCCCee----eeCCCchhchhhhhhhhcCCcEEEE
Q psy15036 43 NFGTQ-LGRRGIP---LLKHL-KYLGTGTHGKTVGIVFPAISVTYSIGPRY----FRFPLVSRFLSLTTGLYRGTMGFLL 113 (179)
Q Consensus 43 ~~Kiv-lG~~gvG---~~~~~-~~~~~~~~~~Ti~~~~~~k~v~~~~~~~i----wDt~G~e~~~~~~~~~~~~~~~vil 113 (179)
.+||+ +|+.||| ++.++ ...+.+.+.||++..+ .+.+.++ +..+ ||++|+++|..++..++++++++|+
T Consensus 2 ~~ki~vvG~~~vGKTsL~~~~~~~~f~~~~~~t~~~~~-~~~~~~~-~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~~il 79 (172)
T cd04141 2 EYKIVMLGAGGVGKSAVTMQFISHSFPDYHDPTIEDAY-KQQARID-NEPALLDILDTAGQAEFTAMRDQYMRCGEGFII 79 (172)
T ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCCCCcCCcccceE-EEEEEEC-CEEEEEEEEeCCCchhhHHHhHHHhhcCCEEEE
Confidence 47997 9999999 55444 4677788999998655 4567777 7665 9999999999999999999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHHHhC-CccCccccceEEEEeeCCCcCCCCCCCHHHHHHHHhhhC
Q psy15036 114 IFDVTNENSFKDVEKWLLQIKVMDG-ALFTHFELQIVFMRGCLELLQRCREVVTPDQIMFGSTQS 177 (179)
Q Consensus 114 vyDit~~~Sf~~l~~w~~~i~~~~~-~~~~~~~~~~iilvGnK~Dl~~~r~Vs~~e~~~~a~~~~ 177 (179)
|||+++++||+++..|+..+.+... .+ .|++|||||+|+.++|.++.+++.++|++.+
T Consensus 80 v~d~~~~~Sf~~~~~~~~~i~~~~~~~~------~piilvgNK~Dl~~~~~v~~~~~~~~a~~~~ 138 (172)
T cd04141 80 CYSVTDRHSFQEASEFKKLITRVRLTED------IPLVLVGNKVDLESQRQVTTEEGRNLAREFN 138 (172)
T ss_pred EEECCchhHHHHHHHHHHHHHHhcCCCC------CCEEEEEEChhhhhcCccCHHHHHHHHHHhC
Confidence 9999999999999999998877543 23 6899999999998889999999999998764
No 39
>KOG0393|consensus
Probab=99.93 E-value=6.6e-25 Score=167.00 Aligned_cols=128 Identities=20% Similarity=0.153 Sum_probs=113.0
Q ss_pred eeeEEE-EeCCCCc----eeEeeeccCCCcccCcceeeeeEEEEEe-cCCCee----eeCCCchhchhhhhhhhcCCcEE
Q psy15036 42 FNFGTQ-LGRRGIP----LLKHLKYLGTGTHGKTVGIVFPAISVTY-SIGPRY----FRFPLVSRFLSLTTGLYRGTMGF 111 (179)
Q Consensus 42 ~~~Kiv-lG~~gvG----~~~~~~~~~~~~~~~Ti~~~~~~k~v~~-~~~~~i----wDt~G~e~~~~~~~~~~~~~~~v 111 (179)
..+|+| +||++|| ++.+-.+.|++.|.||+- +-+...+.+ + |+.+ |||+|||.|..+++..|.++|++
T Consensus 3 ~~~K~VvVGDga~GKT~ll~~~t~~~fp~~yvPTVF-dnys~~v~V~d-g~~v~L~LwDTAGqedYDrlRplsY~~tdvf 80 (198)
T KOG0393|consen 3 RRIKCVVVGDGAVGKTCLLISYTTNAFPEEYVPTVF-DNYSANVTVDD-GKPVELGLWDTAGQEDYDRLRPLSYPQTDVF 80 (198)
T ss_pred eeeEEEEECCCCcCceEEEEEeccCcCcccccCeEE-ccceEEEEecC-CCEEEEeeeecCCCcccccccccCCCCCCEE
Confidence 468998 9999999 555555889999999997 445678888 6 8887 99999999999999999999999
Q ss_pred EEEEeCCChhhHHHH-HHHHHHHHHHhCCccCccccceEEEEeeCCCcCCC------------CCCCHHHHHHHHhhhCC
Q psy15036 112 LLIFDVTNENSFKDV-EKWLLQIKVMDGALFTHFELQIVFMRGCLELLQRC------------REVVTPDQIMFGSTQSS 178 (179)
Q Consensus 112 ilvyDit~~~Sf~~l-~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~~------------r~Vs~~e~~~~a~~~~~ 178 (179)
++||++.+++||+++ .+|+.+++.+++. .|+||||+|.||++. ..|+.+++.++|++.++
T Consensus 81 l~cfsv~~p~S~~nv~~kW~pEi~~~cp~-------vpiiLVGtk~DLr~d~~~~~~l~~~~~~~Vt~~~g~~lA~~iga 153 (198)
T KOG0393|consen 81 LLCFSVVSPESFENVKSKWIPEIKHHCPN-------VPIILVGTKADLRDDPSTLEKLQRQGLEPVTYEQGLELAKEIGA 153 (198)
T ss_pred EEEEEcCChhhHHHHHhhhhHHHHhhCCC-------CCEEEEeehHHhhhCHHHHHHHHhccCCcccHHHHHHHHHHhCc
Confidence 999999999999998 6999999999977 699999999999742 36999999999998874
No 40
>cd04109 Rab28 Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs
Probab=99.92 E-value=1.2e-24 Score=169.35 Aligned_cols=130 Identities=21% Similarity=0.259 Sum_probs=111.5
Q ss_pred eEEE-EeCCCCc---eeEeee-ccCCCcccCcceeeeeEEEEEecCC-Cee----eeCCCchhchhhhhhhhcCCcEEEE
Q psy15036 44 FGTQ-LGRRGIP---LLKHLK-YLGTGTHGKTVGIVFPAISVTYSIG-PRY----FRFPLVSRFLSLTTGLYRGTMGFLL 113 (179)
Q Consensus 44 ~Kiv-lG~~gvG---~~~~~~-~~~~~~~~~Ti~~~~~~k~v~~~~~-~~i----wDt~G~e~~~~~~~~~~~~~~~vil 113 (179)
+||+ +|+++|| ++.++. ..+...+.||++.+++.+.+.++ + ..+ ||++|++.|..+...|++++|++|+
T Consensus 1 ~Ki~ivG~~~vGKSsLi~~l~~~~~~~~~~~T~~~d~~~~~i~~~-~~~~~~~~i~Dt~G~~~~~~l~~~~~~~ad~iil 79 (215)
T cd04109 1 FKIVVLGDGAVGKTSLCRRFAKEGFGKSYKQTIGLDFFSKRVTLP-GNLNVTLQVWDIGGQSIGGKMLDKYIYGAHAVFL 79 (215)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEeC-CCCEEEEEEEECCCcHHHHHHHHHHhhcCCEEEE
Confidence 5897 9999999 555554 66788999999999988888886 4 333 9999999999999999999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCCCCCCCHHHHHHHHhhhC
Q psy15036 114 IFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQRCREVVTPDQIMFGSTQS 177 (179)
Q Consensus 114 vyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~~r~Vs~~e~~~~a~~~~ 177 (179)
|||+++++||+++..|++.+.+..... ...+|+++||||+||.++|.++.+++.++++..+
T Consensus 80 V~D~t~~~s~~~~~~w~~~l~~~~~~~---~~~~piilVgNK~DL~~~~~v~~~~~~~~~~~~~ 140 (215)
T cd04109 80 VYDVTNSQSFENLEDWYSMVRKVLKSS---ETQPLVVLVGNKTDLEHNRTVKDDKHARFAQANG 140 (215)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcccc---CCCceEEEEEECcccccccccCHHHHHHHHHHcC
Confidence 999999999999999999998875431 0126889999999998889999999999998754
No 41
>cd01873 RhoBTB RhoBTB subfamily. Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.
Probab=99.92 E-value=6.7e-25 Score=168.72 Aligned_cols=126 Identities=17% Similarity=0.115 Sum_probs=100.1
Q ss_pred eeEEE-EeCCCCc---ee-Eeee------ccCCCcccCccee-eeeEEE--------EEecCCCee----eeCCCchhch
Q psy15036 43 NFGTQ-LGRRGIP---LL-KHLK------YLGTGTHGKTVGI-VFPAIS--------VTYSIGPRY----FRFPLVSRFL 98 (179)
Q Consensus 43 ~~Kiv-lG~~gvG---~~-~~~~------~~~~~~~~~Ti~~-~~~~k~--------v~~~~~~~i----wDt~G~e~~~ 98 (179)
.+||+ +|+.||| ++ +++. ..+.+.|.||++. +.+... +.++ +..+ |||+|++++
T Consensus 2 ~~Kiv~vG~~~vGKTsLi~~~~~~~~~~~~~f~~~~~pTi~~~~~~~~~~~~~~~~~~~~~-~~~v~l~iwDTaG~~~~- 79 (195)
T cd01873 2 TIKCVVVGDNAVGKTRLICARACNKTLTQYQLLATHVPTVWAIDQYRVCQEVLERSRDVVD-GVSVSLRLWDTFGDHDK- 79 (195)
T ss_pred ceEEEEECCCCcCHHHHHHHHHhCCCcccccCccccCCceecccceeEEeeeccccceeeC-CEEEEEEEEeCCCChhh-
Confidence 47998 9999999 54 3332 3356788999973 333222 2466 7776 999999863
Q ss_pred hhhhhhhcCCcEEEEEEeCCChhhHHHHH-HHHHHHHHHhCCccCccccceEEEEeeCCCcCC-----------------
Q psy15036 99 SLTTGLYRGTMGFLLIFDVTNENSFKDVE-KWLLQIKVMDGALFTHFELQIVFMRGCLELLQR----------------- 160 (179)
Q Consensus 99 ~~~~~~~~~~~~vilvyDit~~~Sf~~l~-~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~----------------- 160 (179)
+++.||++++++|+|||+++++||+++. .|++++++..+. +|++|||||+||.+
T Consensus 80 -~~~~~~~~ad~iilv~d~t~~~Sf~~~~~~w~~~i~~~~~~-------~piilvgNK~DL~~~~~~~~~~~~~~~~~~~ 151 (195)
T cd01873 80 -DRRFAYGRSDVVLLCFSIASPNSLRNVKTMWYPEIRHFCPR-------VPVILVGCKLDLRYADLDEVNRARRPLARPI 151 (195)
T ss_pred -hhcccCCCCCEEEEEEECCChhHHHHHHHHHHHHHHHhCCC-------CCEEEEEEchhccccccchhhhccccccccc
Confidence 6778999999999999999999999996 699999876543 68899999999964
Q ss_pred --CCCCCHHHHHHHHhhhCC
Q psy15036 161 --CREVVTPDQIMFGSTQSS 178 (179)
Q Consensus 161 --~r~Vs~~e~~~~a~~~~~ 178 (179)
+|.|+.+|++++|++.+.
T Consensus 152 ~~~~~V~~~e~~~~a~~~~~ 171 (195)
T cd01873 152 KNADILPPETGRAVAKELGI 171 (195)
T ss_pred ccCCccCHHHHHHHHHHhCC
Confidence 589999999999998753
No 42
>cd04111 Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.92 E-value=2e-24 Score=167.89 Aligned_cols=131 Identities=25% Similarity=0.373 Sum_probs=112.1
Q ss_pred eeeEEE-EeCCCCc---eeEeee-ccCCCcccCcceeeeeEEEEEecCCCee----eeCCCchhchhhhhhhhcCCcEEE
Q psy15036 42 FNFGTQ-LGRRGIP---LLKHLK-YLGTGTHGKTVGIVFPAISVTYSIGPRY----FRFPLVSRFLSLTTGLYRGTMGFL 112 (179)
Q Consensus 42 ~~~Kiv-lG~~gvG---~~~~~~-~~~~~~~~~Ti~~~~~~k~v~~~~~~~i----wDt~G~e~~~~~~~~~~~~~~~vi 112 (179)
+.+||+ +|++||| +++++. ..+...+.||++.++..+.+.+.++..+ ||++|+++|..+...|++++++++
T Consensus 1 ~~~KIvvvG~~~vGKTsLi~~l~~~~~~~~~~~ti~~d~~~~~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii 80 (211)
T cd04111 1 YQFRLIVIGDSTVGKSSLLKRFTEGRFAEVSDPTVGVDFFSRLIEIEPGVRIKLQLWDTAGQERFRSITRSYYRNSVGVL 80 (211)
T ss_pred CceEEEEECCCCCCHHHHHHHHHcCCCCCCCCceeceEEEEEEEEECCCCEEEEEEEeCCcchhHHHHHHHHhcCCcEEE
Confidence 468998 9999999 555555 5567778899999998888887525544 999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCCCCCCCHHHHHHHHhhhC
Q psy15036 113 LIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQRCREVVTPDQIMFGSTQS 177 (179)
Q Consensus 113 lvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~~r~Vs~~e~~~~a~~~~ 177 (179)
+|||+++++||+++..|++++.+..... .+|++|||||+|+...+.++.+++.+++++.+
T Consensus 81 lv~D~~~~~Sf~~l~~~~~~i~~~~~~~-----~~~iilvgNK~Dl~~~~~v~~~~~~~~~~~~~ 140 (211)
T cd04111 81 LVFDITNRESFEHVHDWLEEARSHIQPH-----RPVFILVGHKCDLESQRQVTREEAEKLAKDLG 140 (211)
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhcCCC-----CCeEEEEEEccccccccccCHHHHHHHHHHhC
Confidence 9999999999999999999998765332 16889999999998889999999999998764
No 43
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=99.92 E-value=2.1e-24 Score=160.80 Aligned_cols=127 Identities=28% Similarity=0.385 Sum_probs=110.3
Q ss_pred eEEE-EeCCCCc---eeEeee-ccCCCcccCcceeeeeEEEEEecCCCee----eeCCCchhchhhhhhhhcCCcEEEEE
Q psy15036 44 FGTQ-LGRRGIP---LLKHLK-YLGTGTHGKTVGIVFPAISVTYSIGPRY----FRFPLVSRFLSLTTGLYRGTMGFLLI 114 (179)
Q Consensus 44 ~Kiv-lG~~gvG---~~~~~~-~~~~~~~~~Ti~~~~~~k~v~~~~~~~i----wDt~G~e~~~~~~~~~~~~~~~vilv 114 (179)
+||+ +|+++|| +++++. ..+...+.||++.++..+.+..+ +..+ ||++|+++|..++..++++++++++|
T Consensus 2 ~ki~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~-~~~~~~~l~Dt~g~~~~~~~~~~~~~~~~~~l~v 80 (165)
T cd01865 2 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRN-DKRVKLQIWDTAGQERYRTITTAYYRGAMGFILM 80 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEEC-CEEEEEEEEECCChHHHHHHHHHHccCCcEEEEE
Confidence 7998 9999999 665655 55677889999988877777766 6554 99999999999999999999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCCCCCCCHHHHHHHHhhhC
Q psy15036 115 FDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQRCREVVTPDQIMFGSTQS 177 (179)
Q Consensus 115 yDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~~r~Vs~~e~~~~a~~~~ 177 (179)
||+++++||+.+..|++.+.+..... +|+++||||+||.+++.++.+++.+++++..
T Consensus 81 ~d~~~~~s~~~~~~~~~~i~~~~~~~------~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~ 137 (165)
T cd01865 81 YDITNEESFNAVQDWSTQIKTYSWDN------AQVILVGNKCDMEDERVVSSERGRQLADQLG 137 (165)
T ss_pred EECCCHHHHHHHHHHHHHHHHhCCCC------CCEEEEEECcccCcccccCHHHHHHHHHHcC
Confidence 99999999999999999998766544 6899999999998888999999999987643
No 44
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.92 E-value=4.9e-24 Score=158.58 Aligned_cols=130 Identities=21% Similarity=0.409 Sum_probs=112.8
Q ss_pred ceeeEEE-EeCCCCc---eeEeee-ccCCCcccCcceeeeeEEEEEecCCCee----eeCCCchhchhhhhhhhcCCcEE
Q psy15036 41 SFNFGTQ-LGRRGIP---LLKHLK-YLGTGTHGKTVGIVFPAISVTYSIGPRY----FRFPLVSRFLSLTTGLYRGTMGF 111 (179)
Q Consensus 41 ~~~~Kiv-lG~~gvG---~~~~~~-~~~~~~~~~Ti~~~~~~k~v~~~~~~~i----wDt~G~e~~~~~~~~~~~~~~~v 111 (179)
++.+||+ +|+.|+| ++.++. +.+...+.+|++.++..+.+.++ +..+ ||++|+++|..+...+++.+|++
T Consensus 1 ~~~~kv~vvG~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~-~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~ 79 (165)
T cd01864 1 DFLFKIILIGDSNVGKTCVVQRFKSGTFSERQGNTIGVDFTMKTLEIE-GKRVKLQIWDTAGQERFRTITQSYYRSANGA 79 (165)
T ss_pred CceeEEEEECCCCCCHHHHHHHHhhCCCcccCCCccceEEEEEEEEEC-CEEEEEEEEECCChHHHHHHHHHHhccCCEE
Confidence 3679998 9999999 555554 66777888999988877888888 7543 99999999999999999999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCCCCCCCHHHHHHHHhhhC
Q psy15036 112 LLIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQRCREVVTPDQIMFGSTQS 177 (179)
Q Consensus 112 ilvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~~r~Vs~~e~~~~a~~~~ 177 (179)
++|||+++++||+.+..|+..+......+ +|+++||||+|+.+.+.+..+++.++++..+
T Consensus 80 llv~d~~~~~s~~~~~~~~~~i~~~~~~~------~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~ 139 (165)
T cd01864 80 IIAYDITRRSSFESVPHWIEEVEKYGASN------VVLLLIGNKCDLEEQREVLFEEACTLAEKNG 139 (165)
T ss_pred EEEEECcCHHHHHhHHHHHHHHHHhCCCC------CcEEEEEECcccccccccCHHHHHHHHHHcC
Confidence 99999999999999999999998765444 6889999999999888999999999998754
No 45
>cd04126 Rab20 Rab20 subfamily. Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo
Probab=99.92 E-value=2.6e-24 Score=168.27 Aligned_cols=124 Identities=20% Similarity=0.176 Sum_probs=102.5
Q ss_pred eEEE-EeCCCCc---eeEeee-ccCCCcccCcceeeeeEEEEEecCCCee--eeCCCchhchhhhhhhhcCCcEEEEEEe
Q psy15036 44 FGTQ-LGRRGIP---LLKHLK-YLGTGTHGKTVGIVFPAISVTYSIGPRY--FRFPLVSRFLSLTTGLYRGTMGFLLIFD 116 (179)
Q Consensus 44 ~Kiv-lG~~gvG---~~~~~~-~~~~~~~~~Ti~~~~~~k~v~~~~~~~i--wDt~G~e~~~~~~~~~~~~~~~vilvyD 116 (179)
+||+ +|+.+|| ++.++. ..|. .+.||++.++..+.+ . ...+ ||++|+++|..++..|+++++++|+|||
T Consensus 1 ~KIvivG~~~vGKTSLi~r~~~~~f~-~~~~Tig~~~~~~~~--~-~~~l~iwDt~G~e~~~~l~~~~~~~ad~~IlV~D 76 (220)
T cd04126 1 LKVVLLGDMNVGKTSLLHRYMERRFK-DTVSTVGGAFYLKQW--G-PYNISIWDTAGREQFHGLGSMYCRGAAAVILTYD 76 (220)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCCC-CCCCccceEEEEEEe--e-EEEEEEEeCCCcccchhhHHHHhccCCEEEEEEE
Confidence 5887 9999999 555554 5454 468999987764433 3 3333 9999999999999999999999999999
Q ss_pred CCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCC-------------------CCCCCHHHHHHHHhhhC
Q psy15036 117 VTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQR-------------------CREVVTPDQIMFGSTQS 177 (179)
Q Consensus 117 it~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~-------------------~r~Vs~~e~~~~a~~~~ 177 (179)
+++++||+++..|+..+.+....+ +|+||||||+||.+ +|+|+.+|++.+|++..
T Consensus 77 vt~~~Sf~~l~~~~~~l~~~~~~~------~piIlVgNK~DL~~~~~~~~~~~~~~~~~~~~~~r~v~~~e~~~~a~~~~ 150 (220)
T cd04126 77 VSNVQSLEELEDRFLGLTDTANED------CLFAVVGNKLDLTEEGALAGQEKDAGDRVSPEDQRQVTLEDAKAFYKRIN 150 (220)
T ss_pred CCCHHHHHHHHHHHHHHHHhcCCC------CcEEEEEECcccccccccccccccccccccccccccCCHHHHHHHHHHhC
Confidence 999999999998888887654443 68999999999976 79999999999998864
No 46
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=99.91 E-value=6e-24 Score=163.48 Aligned_cols=130 Identities=27% Similarity=0.412 Sum_probs=112.3
Q ss_pred CceeeEEE-EeCCCCc---eeEeee-ccCCCcccCcceeeeeEEEEEecCCCee----eeCCCchhchhhhhhhhcCCcE
Q psy15036 40 FSFNFGTQ-LGRRGIP---LLKHLK-YLGTGTHGKTVGIVFPAISVTYSIGPRY----FRFPLVSRFLSLTTGLYRGTMG 110 (179)
Q Consensus 40 ~~~~~Kiv-lG~~gvG---~~~~~~-~~~~~~~~~Ti~~~~~~k~v~~~~~~~i----wDt~G~e~~~~~~~~~~~~~~~ 110 (179)
+++.+||+ +|++||| ++.++. ..+...+.||++.++..+.+.++ +..+ ||++|+++|..++..+++++++
T Consensus 3 ~~~~~kivvvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~-~~~~~l~l~D~~G~~~~~~~~~~~~~~a~~ 81 (199)
T cd04110 3 YDHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEIN-GERVKLQIWDTAGQERFRTITSTYYRGTHG 81 (199)
T ss_pred CCceeEEEEECCCCCCHHHHHHHHhcCCCCCCcCccccceeEEEEEEEC-CEEEEEEEEeCCCchhHHHHHHHHhCCCcE
Confidence 45689998 9999999 555554 55677889999998887888887 7554 9999999999999999999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCCCCCCCHHHHHHHHhhhC
Q psy15036 111 FLLIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQRCREVVTPDQIMFGSTQS 177 (179)
Q Consensus 111 vilvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~~r~Vs~~e~~~~a~~~~ 177 (179)
+++|||+++++||+.+..|++.+...... .|++|||||+|+...+.++.+++..++++..
T Consensus 82 iilv~D~~~~~s~~~~~~~~~~i~~~~~~-------~piivVgNK~Dl~~~~~~~~~~~~~~~~~~~ 141 (199)
T cd04110 82 VIVVYDVTNGESFVNVKRWLQEIEQNCDD-------VCKVLVGNKNDDPERKVVETEDAYKFAGQMG 141 (199)
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhCCC-------CCEEEEEECcccccccccCHHHHHHHHHHcC
Confidence 99999999999999999999998876544 6888999999998888899999999987643
No 47
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=99.91 E-value=6e-24 Score=158.12 Aligned_cols=129 Identities=24% Similarity=0.389 Sum_probs=112.1
Q ss_pred eeeEEE-EeCCCCc---eeEeee-ccCCCcccCcceeeeeEEEEEecCCCee----eeCCCchhchhhhhhhhcCCcEEE
Q psy15036 42 FNFGTQ-LGRRGIP---LLKHLK-YLGTGTHGKTVGIVFPAISVTYSIGPRY----FRFPLVSRFLSLTTGLYRGTMGFL 112 (179)
Q Consensus 42 ~~~Kiv-lG~~gvG---~~~~~~-~~~~~~~~~Ti~~~~~~k~v~~~~~~~i----wDt~G~e~~~~~~~~~~~~~~~vi 112 (179)
+.+||+ +|++||| ++.++. ..+...+.+|++.++..+.+.++ +..+ ||++|+++|..++..++++++++|
T Consensus 1 ~~~ki~i~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~-~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii 79 (166)
T cd01869 1 YLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELD-GKTIKLQIWDTAGQERFRTITSSYYRGAHGII 79 (166)
T ss_pred CeEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEEC-CEEEEEEEEECCCcHhHHHHHHHHhCcCCEEE
Confidence 368998 9999999 555554 55677889999988888888887 7654 999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCCCCCCCHHHHHHHHhhhC
Q psy15036 113 LIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQRCREVVTPDQIMFGSTQS 177 (179)
Q Consensus 113 lvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~~r~Vs~~e~~~~a~~~~ 177 (179)
+|||+++++||+++..|+..+.+....+ .|+++||||+|+.+.+.++.++++.++++..
T Consensus 80 ~v~d~~~~~s~~~l~~~~~~~~~~~~~~------~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~ 138 (166)
T cd01869 80 IVYDVTDQESFNNVKQWLQEIDRYASEN------VNKLLVGNKCDLTDKRVVDYSEAQEFADELG 138 (166)
T ss_pred EEEECcCHHHHHhHHHHHHHHHHhCCCC------CcEEEEEEChhcccccCCCHHHHHHHHHHcC
Confidence 9999999999999999999998876443 6889999999998888999999999998654
No 48
>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re
Probab=99.91 E-value=6e-24 Score=159.73 Aligned_cols=126 Identities=17% Similarity=0.322 Sum_probs=106.6
Q ss_pred EEE-EeCCCCc---eeEeee-ccCCCcccCcceeeeeEEEEEecCCCee----eeCCCchhchhhhhhhhcCCcEEEEEE
Q psy15036 45 GTQ-LGRRGIP---LLKHLK-YLGTGTHGKTVGIVFPAISVTYSIGPRY----FRFPLVSRFLSLTTGLYRGTMGFLLIF 115 (179)
Q Consensus 45 Kiv-lG~~gvG---~~~~~~-~~~~~~~~~Ti~~~~~~k~v~~~~~~~i----wDt~G~e~~~~~~~~~~~~~~~vilvy 115 (179)
||+ +|+.||| +++++. +.|.++|.||++.++..+.+.++ +..+ |||+|+++|..++..+++++|++++||
T Consensus 2 ki~ivG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~-~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~ 80 (170)
T cd04108 2 KVIVVGDLSVGKTCLINRFCKDVFDKNYKATIGVDFEMERFEIL-GVPFSLQLWDTAGQERFKCIASTYYRGAQAIIIVF 80 (170)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEEC-CEEEEEEEEeCCChHHHHhhHHHHhcCCCEEEEEE
Confidence 787 9999999 555544 66888999999999887888888 7665 999999999999999999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHHHh-CCccCccccceEEEEeeCCCcCCCCC--CCHHHHHHHHhhhC
Q psy15036 116 DVTNENSFKDVEKWLLQIKVMD-GALFTHFELQIVFMRGCLELLQRCRE--VVTPDQIMFGSTQS 177 (179)
Q Consensus 116 Dit~~~Sf~~l~~w~~~i~~~~-~~~~~~~~~~~iilvGnK~Dl~~~r~--Vs~~e~~~~a~~~~ 177 (179)
|+++++||+.+..|++++.+.. +.. +|+++||||.|+.+++. +..+++.+++++..
T Consensus 81 d~~~~~s~~~~~~~~~~~~~~~~~~~------~~iilVgnK~Dl~~~~~~~~~~~~~~~~~~~~~ 139 (170)
T cd04108 81 DLTDVASLEHTRQWLEDALKENDPSS------VLLFLVGTKKDLSSPAQYALMEQDAIKLAAEMQ 139 (170)
T ss_pred ECcCHHHHHHHHHHHHHHHHhcCCCC------CeEEEEEEChhcCccccccccHHHHHHHHHHcC
Confidence 9999999999999999987654 333 68899999999966544 46778888887643
No 49
>cd01871 Rac1_like Rac1-like subfamily. The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti
Probab=99.91 E-value=4.8e-24 Score=160.87 Aligned_cols=125 Identities=18% Similarity=0.187 Sum_probs=104.7
Q ss_pred eEEE-EeCCCCc---eeEeee-ccCCCcccCcceeeeeEEEEEecCCCee----eeCCCchhchhhhhhhhcCCcEEEEE
Q psy15036 44 FGTQ-LGRRGIP---LLKHLK-YLGTGTHGKTVGIVFPAISVTYSIGPRY----FRFPLVSRFLSLTTGLYRGTMGFLLI 114 (179)
Q Consensus 44 ~Kiv-lG~~gvG---~~~~~~-~~~~~~~~~Ti~~~~~~k~v~~~~~~~i----wDt~G~e~~~~~~~~~~~~~~~vilv 114 (179)
+||+ +|++||| ++.++. +.+.++|.||++..+ .+.+.++ +..+ |||+|+++|..+++.+++++|++|+|
T Consensus 2 ~ki~iiG~~~vGKSsli~~~~~~~f~~~~~~t~~~~~-~~~~~~~-~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv 79 (174)
T cd01871 2 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVD-GKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLIC 79 (174)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCcCCCcceeee-EEEEEEC-CEEEEEEEEECCCchhhhhhhhhhcCCCCEEEEE
Confidence 6897 9999999 554444 678889999997544 4566777 7655 99999999999999999999999999
Q ss_pred EeCCChhhHHHHH-HHHHHHHHHhCCccCccccceEEEEeeCCCcCCC------------CCCCHHHHHHHHhhhC
Q psy15036 115 FDVTNENSFKDVE-KWLLQIKVMDGALFTHFELQIVFMRGCLELLQRC------------REVVTPDQIMFGSTQS 177 (179)
Q Consensus 115 yDit~~~Sf~~l~-~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~~------------r~Vs~~e~~~~a~~~~ 177 (179)
||+++++||+++. .|+..+....+ + .|++|||||+||.++ +.|+.+|+.++|++..
T Consensus 80 ~d~~~~~sf~~~~~~~~~~~~~~~~-~------~piilvgnK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 148 (174)
T cd01871 80 FSLVSPASFENVRAKWYPEVRHHCP-N------TPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIG 148 (174)
T ss_pred EECCCHHHHHHHHHHHHHHHHHhCC-C------CCEEEEeeChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcC
Confidence 9999999999995 79998877543 3 689999999999643 4699999999998765
No 50
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=99.91 E-value=1.3e-23 Score=157.04 Aligned_cols=131 Identities=24% Similarity=0.415 Sum_probs=113.0
Q ss_pred CceeeEEE-EeCCCCc---eeEeee-ccCCCcccCcceeeeeEEEEEecCCCee----eeCCCchhchhhhhhhhcCCcE
Q psy15036 40 FSFNFGTQ-LGRRGIP---LLKHLK-YLGTGTHGKTVGIVFPAISVTYSIGPRY----FRFPLVSRFLSLTTGLYRGTMG 110 (179)
Q Consensus 40 ~~~~~Kiv-lG~~gvG---~~~~~~-~~~~~~~~~Ti~~~~~~k~v~~~~~~~i----wDt~G~e~~~~~~~~~~~~~~~ 110 (179)
|++.+||+ +|+++|| ++.++. ..+...+.+|.+.++..+.+.++ +..+ ||++|+++|..+...+++++++
T Consensus 1 ~~~~~ki~vvG~~~vGKSsLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~-~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ 79 (168)
T cd01866 1 YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITID-GKQIKLQIWDTAGQESFRSITRSYYRGAAG 79 (168)
T ss_pred CCcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEEC-CEEEEEEEEECCCcHHHHHHHHHHhccCCE
Confidence 56789997 9999999 555555 55667778899988877788887 7554 9999999999999999999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCCCCCCCHHHHHHHHhhhC
Q psy15036 111 FLLIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQRCREVVTPDQIMFGSTQS 177 (179)
Q Consensus 111 vilvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~~r~Vs~~e~~~~a~~~~ 177 (179)
+++|||+++++||+.+..|+..+++....+ .|+++||||.|+..++.++.++++.++.+..
T Consensus 80 il~v~d~~~~~s~~~~~~~~~~~~~~~~~~------~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~ 140 (168)
T cd01866 80 ALLVYDITRRETFNHLTSWLEDARQHSNSN------MTIMLIGNKCDLESRREVSYEEGEAFAKEHG 140 (168)
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhCCCC------CcEEEEEECcccccccCCCHHHHHHHHHHcC
Confidence 999999999999999999999998875444 6899999999998888999999999987653
No 51
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.91 E-value=1e-23 Score=160.37 Aligned_cols=127 Identities=24% Similarity=0.354 Sum_probs=111.1
Q ss_pred eEEE-EeCCCCc---eeEeee-ccCCCcccCcceeeeeEEEEEecCCCee----eeCCCchhchhhhhhhhcCCcEEEEE
Q psy15036 44 FGTQ-LGRRGIP---LLKHLK-YLGTGTHGKTVGIVFPAISVTYSIGPRY----FRFPLVSRFLSLTTGLYRGTMGFLLI 114 (179)
Q Consensus 44 ~Kiv-lG~~gvG---~~~~~~-~~~~~~~~~Ti~~~~~~k~v~~~~~~~i----wDt~G~e~~~~~~~~~~~~~~~vilv 114 (179)
+||+ +|++||| ++.++. ..+...+.+|++.++..+.+.++ +..+ ||++|+++|..++..++++++++|+|
T Consensus 1 ~ki~v~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~-~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~iilv 79 (188)
T cd04125 1 FKVVIIGDYGVGKSSLLKRFTEDEFSESTKSTIGVDFKIKTVYIE-NKIIKLQIWDTNGQERFRSLNNSYYRGAHGYLLV 79 (188)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEEC-CEEEEEEEEECCCcHHHHhhHHHHccCCCEEEEE
Confidence 5897 9999999 555555 55667789999988887888887 7665 99999999999999999999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCCCCCCCHHHHHHHHhhhC
Q psy15036 115 FDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQRCREVVTPDQIMFGSTQS 177 (179)
Q Consensus 115 yDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~~r~Vs~~e~~~~a~~~~ 177 (179)
||+++++||+++..|+.++.+..... +|+++||||+|+.+.+.++.++++.+++...
T Consensus 80 ~d~~~~~s~~~i~~~~~~i~~~~~~~------~~~ivv~nK~Dl~~~~~v~~~~~~~~~~~~~ 136 (188)
T cd04125 80 YDVTDQESFENLKFWINEINRYAREN------VIKVIVANKSDLVNNKVVDSNIAKSFCDSLN 136 (188)
T ss_pred EECcCHHHHHHHHHHHHHHHHhCCCC------CeEEEEEECCCCcccccCCHHHHHHHHHHcC
Confidence 99999999999999999999876554 6889999999999889999999999987643
No 52
>PLN03071 GTP-binding nuclear protein Ran; Provisional
Probab=99.91 E-value=9.4e-24 Score=164.98 Aligned_cols=126 Identities=17% Similarity=0.206 Sum_probs=106.4
Q ss_pred ceeeEEE-EeCCCCc---eeEee-eccCCCcccCcceeeeeEEEEEecCCCee----eeCCCchhchhhhhhhhcCCcEE
Q psy15036 41 SFNFGTQ-LGRRGIP---LLKHL-KYLGTGTHGKTVGIVFPAISVTYSIGPRY----FRFPLVSRFLSLTTGLYRGTMGF 111 (179)
Q Consensus 41 ~~~~Kiv-lG~~gvG---~~~~~-~~~~~~~~~~Ti~~~~~~k~v~~~~~~~i----wDt~G~e~~~~~~~~~~~~~~~v 111 (179)
...+||+ +|++||| ++.++ .+.+...+.||+|.++..+.+..+ +..+ |||+|+++|..++..||++++++
T Consensus 11 ~~~~Ki~vvG~~gvGKTsli~~~~~~~f~~~~~~tig~~~~~~~~~~~-~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ 89 (219)
T PLN03071 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTN-CGKIRFYCWDTAGQEKFGGLRDGYYIHGQCA 89 (219)
T ss_pred CCceEEEEECcCCCCHHHHHHHHhhCCCCCccCCccceeEEEEEEEEC-CeEEEEEEEECCCchhhhhhhHHHcccccEE
Confidence 4579998 9999999 55544 477888899999998887777776 6555 99999999999999999999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCCCCCCCHHHHHHHHhhh
Q psy15036 112 LLIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQRCREVVTPDQIMFGSTQ 176 (179)
Q Consensus 112 ilvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~~r~Vs~~e~~~~a~~~ 176 (179)
|+|||+++++||+++..|++++++.... .|++|||||+|+.. +.++.+++ .++++.
T Consensus 90 ilvfD~~~~~s~~~i~~w~~~i~~~~~~-------~piilvgNK~Dl~~-~~v~~~~~-~~~~~~ 145 (219)
T PLN03071 90 IIMFDVTARLTYKNVPTWHRDLCRVCEN-------IPIVLCGNKVDVKN-RQVKAKQV-TFHRKK 145 (219)
T ss_pred EEEEeCCCHHHHHHHHHHHHHHHHhCCC-------CcEEEEEEchhhhh-ccCCHHHH-HHHHhc
Confidence 9999999999999999999999876543 68999999999964 66776666 666543
No 53
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=99.91 E-value=1.2e-23 Score=156.11 Aligned_cols=128 Identities=24% Similarity=0.470 Sum_probs=112.5
Q ss_pred eeeEEE-EeCCCCc---eeEeee-ccCCCcccCcceeeeeEEEEEecCCCee----eeCCCchhchhhhhhhhcCCcEEE
Q psy15036 42 FNFGTQ-LGRRGIP---LLKHLK-YLGTGTHGKTVGIVFPAISVTYSIGPRY----FRFPLVSRFLSLTTGLYRGTMGFL 112 (179)
Q Consensus 42 ~~~Kiv-lG~~gvG---~~~~~~-~~~~~~~~~Ti~~~~~~k~v~~~~~~~i----wDt~G~e~~~~~~~~~~~~~~~vi 112 (179)
+.+||+ +|+++|| +++++. ..+...+.||++.++..+.+.++ +..+ ||++|+++|..+.+.++++++++|
T Consensus 2 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~-~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i 80 (165)
T cd01868 2 YLFKIVLIGDSGVGKSNLLSRFTRNEFNLDSKSTIGVEFATRSIQID-GKTIKAQIWDTAGQERYRAITSAYYRGAVGAL 80 (165)
T ss_pred CceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEEC-CEEEEEEEEeCCChHHHHHHHHHHHCCCCEEE
Confidence 578997 9999999 665555 55667788999998888888888 7654 999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCCCCCCCHHHHHHHHhhh
Q psy15036 113 LIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQRCREVVTPDQIMFGSTQ 176 (179)
Q Consensus 113 lvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~~r~Vs~~e~~~~a~~~ 176 (179)
+|||+++++||+++..|+..+++....+ +|+++||||+|+...+.+..++...++.+.
T Consensus 81 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~------~pi~vv~nK~Dl~~~~~~~~~~~~~~~~~~ 138 (165)
T cd01868 81 LVYDITKKQTFENVERWLKELRDHADSN------IVIMLVGNKSDLRHLRAVPTEEAKAFAEKN 138 (165)
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhCCCC------CeEEEEEECccccccccCCHHHHHHHHHHc
Confidence 9999999999999999999998876554 689999999999888999999999998764
No 54
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=99.91 E-value=1e-23 Score=156.03 Aligned_cols=132 Identities=21% Similarity=0.366 Sum_probs=111.5
Q ss_pred eEEE-EeCCCCc---eeEeee-ccCCCcccCcceeeeeEEEEEecCCCee----eeCCCchhchhhhhhhhcCCcEEEEE
Q psy15036 44 FGTQ-LGRRGIP---LLKHLK-YLGTGTHGKTVGIVFPAISVTYSIGPRY----FRFPLVSRFLSLTTGLYRGTMGFLLI 114 (179)
Q Consensus 44 ~Kiv-lG~~gvG---~~~~~~-~~~~~~~~~Ti~~~~~~k~v~~~~~~~i----wDt~G~e~~~~~~~~~~~~~~~vilv 114 (179)
+||+ +|++||| ++.++. ..+.+.+.||++.++..+.+.++ +..+ |||+|+++|..+++.++++++++|+|
T Consensus 1 ~ki~~vG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~-~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv 79 (168)
T cd04119 1 IKVISMGNSGVGKSCIIKRYCEGRFVSKYLPTIGIDYGVKKVSVR-NKEVRVNFFDLSGHPEYLEVRNEFYKDTQGVLLV 79 (168)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEEC-CeEEEEEEEECCccHHHHHHHHHHhccCCEEEEE
Confidence 5887 9999999 555555 55778899999999888888887 7666 99999999999999999999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCCCCCCCHHHHHHHHhhhC
Q psy15036 115 FDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQRCREVVTPDQIMFGSTQS 177 (179)
Q Consensus 115 yDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~~r~Vs~~e~~~~a~~~~ 177 (179)
||+++++||+.+..|+.++.+..... .....+|+++||||+|+.+++.++.++++.++++.+
T Consensus 80 ~D~~~~~s~~~~~~~~~~~~~~~~~~-~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~ 141 (168)
T cd04119 80 YDVTDRQSFEALDSWLKEMKQEGGPH-GNMENIVVVVCANKIDLTKHRAVSEDEGRLWAESKG 141 (168)
T ss_pred EECCCHHHHHhHHHHHHHHHHhcccc-ccCCCceEEEEEEchhcccccccCHHHHHHHHHHcC
Confidence 99999999999999999998775421 001127899999999998778999999999988654
No 55
>PLN03108 Rab family protein; Provisional
Probab=99.91 E-value=1.1e-23 Score=163.45 Aligned_cols=131 Identities=24% Similarity=0.393 Sum_probs=114.9
Q ss_pred CceeeEEE-EeCCCCc---eeEeee-ccCCCcccCcceeeeeEEEEEecCCCee----eeCCCchhchhhhhhhhcCCcE
Q psy15036 40 FSFNFGTQ-LGRRGIP---LLKHLK-YLGTGTHGKTVGIVFPAISVTYSIGPRY----FRFPLVSRFLSLTTGLYRGTMG 110 (179)
Q Consensus 40 ~~~~~Kiv-lG~~gvG---~~~~~~-~~~~~~~~~Ti~~~~~~k~v~~~~~~~i----wDt~G~e~~~~~~~~~~~~~~~ 110 (179)
+++.+||+ +|+.||| ++.++. ..+...+.+|++.++..+.+.++ +..+ ||++|+++|..++..+++++|+
T Consensus 3 ~~~~~kivivG~~gvGKStLi~~l~~~~~~~~~~~ti~~~~~~~~i~~~-~~~i~l~l~Dt~G~~~~~~~~~~~~~~ad~ 81 (210)
T PLN03108 3 YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITID-NKPIKLQIWDTAGQESFRSITRSYYRGAAG 81 (210)
T ss_pred CCcceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCccceEEEEEEEEC-CEEEEEEEEeCCCcHHHHHHHHHHhccCCE
Confidence 45789998 9999999 666665 44677788999999888888888 7665 9999999999999999999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCCCCCCCHHHHHHHHhhhC
Q psy15036 111 FLLIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQRCREVVTPDQIMFGSTQS 177 (179)
Q Consensus 111 vilvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~~r~Vs~~e~~~~a~~~~ 177 (179)
+++|||+++++||+++..|+..+.+..... .|+++||||+||.++|.++.+++.++++++.
T Consensus 82 ~vlv~D~~~~~s~~~l~~~~~~~~~~~~~~------~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~ 142 (210)
T PLN03108 82 ALLVYDITRRETFNHLASWLEDARQHANAN------MTIMLIGNKCDLAHRRAVSTEEGEQFAKEHG 142 (210)
T ss_pred EEEEEECCcHHHHHHHHHHHHHHHHhcCCC------CcEEEEEECccCccccCCCHHHHHHHHHHcC
Confidence 999999999999999999999987765544 6899999999999989999999999998754
No 56
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=99.91 E-value=7.6e-24 Score=156.53 Aligned_cols=127 Identities=16% Similarity=0.181 Sum_probs=106.6
Q ss_pred eEEE-EeCCCCc---eeEeee-ccCCCcccCcceeeeeEEEEEecCCCee----eeCCCchhchhhhhhhhcCCcEEEEE
Q psy15036 44 FGTQ-LGRRGIP---LLKHLK-YLGTGTHGKTVGIVFPAISVTYSIGPRY----FRFPLVSRFLSLTTGLYRGTMGFLLI 114 (179)
Q Consensus 44 ~Kiv-lG~~gvG---~~~~~~-~~~~~~~~~Ti~~~~~~k~v~~~~~~~i----wDt~G~e~~~~~~~~~~~~~~~vilv 114 (179)
+||+ +|++||| ++.++. +.+.+.+.||++ +...+.+.++ +..+ |||+|+++|..+++.|+++++++++|
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~-~~~~~~~~~~-~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv 79 (163)
T cd04136 2 YKVVVLGSGGVGKSALTVQFVQGIFVEKYDPTIE-DSYRKQIEVD-GQQCMLEILDTAGTEQFTAMRDLYIKNGQGFVLV 79 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCcccCCchh-hhEEEEEEEC-CEEEEEEEEECCCccccchHHHHHhhcCCEEEEE
Confidence 7997 9999999 555444 667788889987 4445777787 7654 99999999999999999999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCCCCCCCHHHHHHHHhhhC
Q psy15036 115 FDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQRCREVVTPDQIMFGSTQS 177 (179)
Q Consensus 115 yDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~~r~Vs~~e~~~~a~~~~ 177 (179)
||+++++||+++..|++.+.+..... ..|+++||||+|+.+++.++.+++.+++++..
T Consensus 80 ~d~~~~~s~~~~~~~~~~i~~~~~~~-----~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~ 137 (163)
T cd04136 80 YSITSQSSFNDLQDLREQILRVKDTE-----NVPMVLVGNKCDLEDERVVSREEGQALARQWG 137 (163)
T ss_pred EECCCHHHHHHHHHHHHHHHHhcCCC-----CCCEEEEEECccccccceecHHHHHHHHHHcC
Confidence 99999999999999999998764321 16888999999998888999999998887643
No 57
>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran is involved in the active transport of proteins through nuclear pores.
Probab=99.91 E-value=1.3e-23 Score=162.23 Aligned_cols=119 Identities=18% Similarity=0.220 Sum_probs=101.3
Q ss_pred EeCCCCc---eeEeee-ccCCCcccCcceeeeeEEEEEecCCCee----eeCCCchhchhhhhhhhcCCcEEEEEEeCCC
Q psy15036 48 LGRRGIP---LLKHLK-YLGTGTHGKTVGIVFPAISVTYSIGPRY----FRFPLVSRFLSLTTGLYRGTMGFLLIFDVTN 119 (179)
Q Consensus 48 lG~~gvG---~~~~~~-~~~~~~~~~Ti~~~~~~k~v~~~~~~~i----wDt~G~e~~~~~~~~~~~~~~~vilvyDit~ 119 (179)
+|++||| ++.++. +.+.+.+.||+|.++..+.+.++ +..+ |||+|+++|..+++.||++++++|+|||+++
T Consensus 1 vG~~~vGKTsLi~r~~~~~f~~~~~~Tig~~~~~~~~~~~-~~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~ilV~D~t~ 79 (200)
T smart00176 1 VGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTN-RGPIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTA 79 (200)
T ss_pred CCCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEEC-CEEEEEEEEECCCchhhhhhhHHHhcCCCEEEEEEECCC
Confidence 6999999 555544 66788899999999988888887 7665 9999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCCCCCCCHHHHHHHHhhh
Q psy15036 120 ENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQRCREVVTPDQIMFGSTQ 176 (179)
Q Consensus 120 ~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~~r~Vs~~e~~~~a~~~ 176 (179)
++||+++..|++++++.... .|++|||||+||.. |.++.++ .+++++.
T Consensus 80 ~~S~~~i~~w~~~i~~~~~~-------~piilvgNK~Dl~~-~~v~~~~-~~~~~~~ 127 (200)
T smart00176 80 RVTYKNVPNWHRDLVRVCEN-------IPIVLCGNKVDVKD-RKVKAKS-ITFHRKK 127 (200)
T ss_pred hHHHHHHHHHHHHHHHhCCC-------CCEEEEEECccccc-ccCCHHH-HHHHHHc
Confidence 99999999999999987543 68999999999964 6777655 4676653
No 58
>cd04116 Rab9 Rab9 subfamily. Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX
Probab=99.90 E-value=3.9e-23 Score=154.30 Aligned_cols=132 Identities=21% Similarity=0.245 Sum_probs=111.3
Q ss_pred eeeEEE-EeCCCCc---eeEeee-ccCCCcccCcceeeeeEEEEEecCCCee----eeCCCchhchhhhhhhhcCCcEEE
Q psy15036 42 FNFGTQ-LGRRGIP---LLKHLK-YLGTGTHGKTVGIVFPAISVTYSIGPRY----FRFPLVSRFLSLTTGLYRGTMGFL 112 (179)
Q Consensus 42 ~~~Kiv-lG~~gvG---~~~~~~-~~~~~~~~~Ti~~~~~~k~v~~~~~~~i----wDt~G~e~~~~~~~~~~~~~~~vi 112 (179)
..+||+ +|+++|| ++.++. ..+.+.+.+|++.++..+.+.++ +..+ ||++|+++|..++..+++++++++
T Consensus 4 ~~~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i 82 (170)
T cd04116 4 SLLKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVD-GHFVTLQIWDTAGQERFRSLRTPFYRGSDCCL 82 (170)
T ss_pred eEEEEEEECCCCCCHHHHHHHHHcCCCCcCcCCceeeEEEEEEEEEC-CeEEEEEEEeCCChHHHHHhHHHHhcCCCEEE
Confidence 579998 9999999 555554 66777788999988877888888 7766 999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCCCCCCCHHHHHHHHhhhC
Q psy15036 113 LIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQRCREVVTPDQIMFGSTQS 177 (179)
Q Consensus 113 lvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~~r~Vs~~e~~~~a~~~~ 177 (179)
+|||+++++||+.+..|+.++.+..... ..+..|++|||||+|+. +|.++.+++++++++..
T Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~--~~~~~piilv~nK~Dl~-~~~~~~~~~~~~~~~~~ 144 (170)
T cd04116 83 LTFAVDDSQSFQNLSNWKKEFIYYADVK--EPESFPFVVLGNKNDIP-ERQVSTEEAQAWCRENG 144 (170)
T ss_pred EEEECCCHHHHHhHHHHHHHHHHhcccc--cCCCCcEEEEEECcccc-ccccCHHHHHHHHHHCC
Confidence 9999999999999999999987754321 00126889999999997 68999999999998764
No 59
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=99.90 E-value=2.7e-23 Score=153.60 Aligned_cols=127 Identities=16% Similarity=0.243 Sum_probs=107.4
Q ss_pred eEEE-EeCCCCc---eeEeee-ccCCCcccCcceeeeeEEEEEecC-CCee----eeCCCchhchhhhhhhhcCCcEEEE
Q psy15036 44 FGTQ-LGRRGIP---LLKHLK-YLGTGTHGKTVGIVFPAISVTYSI-GPRY----FRFPLVSRFLSLTTGLYRGTMGFLL 113 (179)
Q Consensus 44 ~Kiv-lG~~gvG---~~~~~~-~~~~~~~~~Ti~~~~~~k~v~~~~-~~~i----wDt~G~e~~~~~~~~~~~~~~~vil 113 (179)
+||+ +|++++| ++.++. ..+.+.+.||++.++..+.+.+.. +..+ ||++|+++|..++..++++++++++
T Consensus 1 ~kv~~vG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~v~ 80 (162)
T cd04106 1 IKVIVVGNGNVGKSSMIQRFVKGIFTKDYKKTIGVDFLEKQIFLRQSDEDVRLMLWDTAGQEEFDAITKAYYRGAQACIL 80 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcEEEEEEEEEEEEcCCCCEEEEEEeeCCchHHHHHhHHHHhcCCCEEEE
Confidence 4897 9999999 555555 557788899999888766666541 2222 9999999999999999999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCCCCCCCHHHHHHHHhhhC
Q psy15036 114 IFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQRCREVVTPDQIMFGSTQS 177 (179)
Q Consensus 114 vyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~~r~Vs~~e~~~~a~~~~ 177 (179)
|||+++++||+.+..|+..+.+.... .|+++||||+|+..++.++.+++..++++.+
T Consensus 81 v~d~~~~~s~~~l~~~~~~~~~~~~~-------~p~iiv~nK~Dl~~~~~v~~~~~~~~~~~~~ 137 (162)
T cd04106 81 VFSTTDRESFEAIESWKEKVEAECGD-------IPMVLVQTKIDLLDQAVITNEEAEALAKRLQ 137 (162)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhCCC-------CCEEEEEEChhcccccCCCHHHHHHHHHHcC
Confidence 99999999999999999999865543 6889999999998889999999999998754
No 60
>cd04134 Rho3 Rho3 subfamily. Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.90 E-value=2.1e-23 Score=159.23 Aligned_cols=124 Identities=19% Similarity=0.159 Sum_probs=103.2
Q ss_pred EEE-EeCCCCc---eeEeee-ccCCCcccCcceeeeeEEEEEecCCCee----eeCCCchhchhhhhhhhcCCcEEEEEE
Q psy15036 45 GTQ-LGRRGIP---LLKHLK-YLGTGTHGKTVGIVFPAISVTYSIGPRY----FRFPLVSRFLSLTTGLYRGTMGFLLIF 115 (179)
Q Consensus 45 Kiv-lG~~gvG---~~~~~~-~~~~~~~~~Ti~~~~~~k~v~~~~~~~i----wDt~G~e~~~~~~~~~~~~~~~vilvy 115 (179)
||+ +|++||| ++.++. +.+...+.||++.++. +.+.++ +..+ ||++|+++|..+++.+|++++++|+||
T Consensus 2 kivivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~-~~i~~~-~~~~~l~i~Dt~G~~~~~~l~~~~~~~a~~~ilv~ 79 (189)
T cd04134 2 KVVVLGDGACGKTSLLNVFTRGYFPQVYEPTVFENYV-HDIFVD-GLHIELSLWDTAGQEEFDRLRSLSYADTDVIMLCF 79 (189)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCccCCcceeeeE-EEEEEC-CEEEEEEEEECCCChhccccccccccCCCEEEEEE
Confidence 787 9999999 554444 6677888999987764 556677 6554 999999999999999999999999999
Q ss_pred eCCChhhHHHHH-HHHHHHHHHhCCccCccccceEEEEeeCCCcCCCC------------CCCHHHHHHHHhhhC
Q psy15036 116 DVTNENSFKDVE-KWLLQIKVMDGALFTHFELQIVFMRGCLELLQRCR------------EVVTPDQIMFGSTQS 177 (179)
Q Consensus 116 Dit~~~Sf~~l~-~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~~r------------~Vs~~e~~~~a~~~~ 177 (179)
|+++++||+++. .|+..+.+..+. .|++|||||+||.+.+ .++.+++.++|++..
T Consensus 80 dv~~~~sf~~~~~~~~~~i~~~~~~-------~piilvgNK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 147 (189)
T cd04134 80 SVDSPDSLENVESKWLGEIREHCPG-------VKLVLVALKCDLREARNERDDLQRYGKHTISYEEGLAVAKRIN 147 (189)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhCCC-------CCEEEEEEChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcC
Confidence 999999999996 699999876543 6899999999997654 478889999987654
No 61
>cd04176 Rap2 Rap2 subgroup. The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl
Probab=99.90 E-value=3e-23 Score=153.74 Aligned_cols=126 Identities=17% Similarity=0.231 Sum_probs=106.4
Q ss_pred eeEEE-EeCCCCc---ee-EeeeccCCCcccCcceeeeeEEEEEecCCCee----eeCCCchhchhhhhhhhcCCcEEEE
Q psy15036 43 NFGTQ-LGRRGIP---LL-KHLKYLGTGTHGKTVGIVFPAISVTYSIGPRY----FRFPLVSRFLSLTTGLYRGTMGFLL 113 (179)
Q Consensus 43 ~~Kiv-lG~~gvG---~~-~~~~~~~~~~~~~Ti~~~~~~k~v~~~~~~~i----wDt~G~e~~~~~~~~~~~~~~~vil 113 (179)
.+||+ +|++||| ++ +...+.+.+.+.||++ ++..+.+.++ +..+ ||++|+++|..++..|+++++++++
T Consensus 1 ~~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~-~~~~~~~~~~-~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~i~ 78 (163)
T cd04176 1 EYKVVVLGSGGVGKSALTVQFVSGTFIEKYDPTIE-DFYRKEIEVD-SSPSVLEILDTAGTEQFASMRDLYIKNGQGFIV 78 (163)
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCchh-heEEEEEEEC-CEEEEEEEEECCCcccccchHHHHHhhCCEEEE
Confidence 37897 9999999 44 4444667788888886 5566778887 7654 9999999999999999999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHHHhC-CccCccccceEEEEeeCCCcCCCCCCCHHHHHHHHhhh
Q psy15036 114 IFDVTNENSFKDVEKWLLQIKVMDG-ALFTHFELQIVFMRGCLELLQRCREVVTPDQIMFGSTQ 176 (179)
Q Consensus 114 vyDit~~~Sf~~l~~w~~~i~~~~~-~~~~~~~~~~iilvGnK~Dl~~~r~Vs~~e~~~~a~~~ 176 (179)
|||+++++||+++..|+..+.+... .+ .|+++||||+|+..++.++.+++..+++..
T Consensus 79 v~d~~~~~s~~~~~~~~~~~~~~~~~~~------~piviv~nK~Dl~~~~~~~~~~~~~~~~~~ 136 (163)
T cd04176 79 VYSLVNQQTFQDIKPMRDQIVRVKGYEK------VPIILVGNKVDLESEREVSSAEGRALAEEW 136 (163)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCC------CCEEEEEECccchhcCccCHHHHHHHHHHh
Confidence 9999999999999999999987643 22 688899999999888889988899888754
No 62
>cd04144 Ras2 Ras2 subfamily. The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.90 E-value=1.8e-23 Score=159.60 Aligned_cols=128 Identities=20% Similarity=0.199 Sum_probs=105.9
Q ss_pred EEE-EeCCCCc---eeEeee-ccCCCcccCcceeeeeEEEEEecCCCee----eeCCCchhchhhhhhhhcCCcEEEEEE
Q psy15036 45 GTQ-LGRRGIP---LLKHLK-YLGTGTHGKTVGIVFPAISVTYSIGPRY----FRFPLVSRFLSLTTGLYRGTMGFLLIF 115 (179)
Q Consensus 45 Kiv-lG~~gvG---~~~~~~-~~~~~~~~~Ti~~~~~~k~v~~~~~~~i----wDt~G~e~~~~~~~~~~~~~~~vilvy 115 (179)
||+ +|+.||| ++.++. +.+...+.||++..+ .+.+.++ +..+ |||+|+++|..++..||+++|++|+||
T Consensus 1 ki~ivG~~~vGKTsli~~l~~~~f~~~~~~t~~~~~-~~~~~~~-~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~ 78 (190)
T cd04144 1 KLVVLGDGGVGKTALTIQLCLNHFVETYDPTIEDSY-RKQVVVD-GQPCMLEVLDTAGQEEYTALRDQWIREGEGFILVY 78 (190)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCccCCCchHhhE-EEEEEEC-CEEEEEEEEECCCchhhHHHHHHHHHhCCEEEEEE
Confidence 576 9999999 555554 567788999998655 4556677 6654 999999999999999999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCCCCCCCHHHHHHHHhhhC
Q psy15036 116 DVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQRCREVVTPDQIMFGSTQS 177 (179)
Q Consensus 116 Dit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~~r~Vs~~e~~~~a~~~~ 177 (179)
|+++++||+++..|+..+.+..... ....|++|||||+|+.+++.++.+++.+++++.+
T Consensus 79 d~~~~~s~~~~~~~~~~i~~~~~~~---~~~~piilvgNK~Dl~~~~~v~~~~~~~~~~~~~ 137 (190)
T cd04144 79 SITSRSTFERVERFREQIQRVKDES---AADVPIMIVGNKCDKVYEREVSTEEGAALARRLG 137 (190)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhccc---CCCCCEEEEEEChhccccCccCHHHHHHHHHHhC
Confidence 9999999999999999998764321 0116888999999998889999999999987654
No 63
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=99.90 E-value=5e-23 Score=154.17 Aligned_cols=129 Identities=21% Similarity=0.237 Sum_probs=110.3
Q ss_pred eeEEE-EeCCCCc---eeEeee-ccCCCcccCcceeeeeEEEEEecCCCee----eeCCCchhch-hhhhhhhcCCcEEE
Q psy15036 43 NFGTQ-LGRRGIP---LLKHLK-YLGTGTHGKTVGIVFPAISVTYSIGPRY----FRFPLVSRFL-SLTTGLYRGTMGFL 112 (179)
Q Consensus 43 ~~Kiv-lG~~gvG---~~~~~~-~~~~~~~~~Ti~~~~~~k~v~~~~~~~i----wDt~G~e~~~-~~~~~~~~~~~~vi 112 (179)
.+||+ +|++||| ++.++. ..+...+.+|++.++..+.+.++ +..+ ||++|+++|+ .+...+++++|+++
T Consensus 2 ~~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~-~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~d~~i 80 (170)
T cd04115 2 IFKIIVIGDSNVGKTCLTYRFCAGRFPERTEATIGVDFRERTVEID-GERIKVQLWDTAGQERFRKSMVQHYYRNVHAVV 80 (170)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCCccccceeEEEEEEEEEEC-CeEEEEEEEeCCChHHHHHhhHHHhhcCCCEEE
Confidence 47997 9999999 554444 56677889999999888888888 7655 9999999997 57889999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCCCCCCCHHHHHHHHhhhC
Q psy15036 113 LIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQRCREVVTPDQIMFGSTQS 177 (179)
Q Consensus 113 lvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~~r~Vs~~e~~~~a~~~~ 177 (179)
+|||+++++||+.+..|++++.+..... ..|+++||||+|+.+.++++.+++.++|+...
T Consensus 81 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~-----~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~ 140 (170)
T cd04115 81 FVYDVTNMASFHSLPSWIEECEQHSLPN-----EVPRILVGNKCDLREQIQVPTDLAQRFADAHS 140 (170)
T ss_pred EEEECCCHHHHHhHHHHHHHHHHhcCCC-----CCCEEEEEECccchhhcCCCHHHHHHHHHHcC
Confidence 9999999999999999999998765321 16899999999999999999999999998653
No 64
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.90 E-value=3.9e-23 Score=157.88 Aligned_cols=127 Identities=29% Similarity=0.403 Sum_probs=109.4
Q ss_pred eEEE-EeCCCCc---eeEeee-ccCC-CcccCcceeeeeEEEEEecCCCee----eeCCCchhchhhhhhhhcCCcEEEE
Q psy15036 44 FGTQ-LGRRGIP---LLKHLK-YLGT-GTHGKTVGIVFPAISVTYSIGPRY----FRFPLVSRFLSLTTGLYRGTMGFLL 113 (179)
Q Consensus 44 ~Kiv-lG~~gvG---~~~~~~-~~~~-~~~~~Ti~~~~~~k~v~~~~~~~i----wDt~G~e~~~~~~~~~~~~~~~vil 113 (179)
+||+ +|+++|| ++.++. ..+. ..+.+|++.++..+.+.++ +..+ |||+|+++|..+...++++++++|+
T Consensus 1 ~Ki~vvG~~~vGKTSli~~~~~~~~~~~~~~~t~~~~~~~~~~~~~-~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~i~ 79 (191)
T cd04112 1 FKVMLLGDSGVGKTCLLVRFKDGAFLNGNFIATVGIDFRNKVVTVD-GVKVKLQIWDTAGQERFRSVTHAYYRDAHALLL 79 (191)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCccCcCCcccceeEEEEEEEC-CEEEEEEEEeCCCcHHHHHhhHHHccCCCEEEE
Confidence 5897 9999999 555554 4443 4688999988877778888 7655 9999999999999999999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCCCCCCCHHHHHHHHhhhC
Q psy15036 114 IFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQRCREVVTPDQIMFGSTQS 177 (179)
Q Consensus 114 vyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~~r~Vs~~e~~~~a~~~~ 177 (179)
|||+++++||+++..|+..+.+..... .|+++||||.|+..+|.++.++++.++++.+
T Consensus 80 v~D~~~~~s~~~~~~~~~~i~~~~~~~------~piiiv~NK~Dl~~~~~~~~~~~~~l~~~~~ 137 (191)
T cd04112 80 LYDITNKASFDNIRAWLTEIKEYAQED------VVIMLLGNKADMSGERVVKREDGERLAKEYG 137 (191)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhCCCC------CcEEEEEEcccchhccccCHHHHHHHHHHcC
Confidence 999999999999999999999876554 6899999999998888999999999987654
No 65
>PTZ00099 rab6; Provisional
Probab=99.90 E-value=5.9e-23 Score=155.53 Aligned_cols=110 Identities=21% Similarity=0.267 Sum_probs=98.7
Q ss_pred ccCCCcccCcceeeeeEEEEEecCCCee----eeCCCchhchhhhhhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHH
Q psy15036 61 YLGTGTHGKTVGIVFPAISVTYSIGPRY----FRFPLVSRFLSLTTGLYRGTMGFLLIFDVTNENSFKDVEKWLLQIKVM 136 (179)
Q Consensus 61 ~~~~~~~~~Ti~~~~~~k~v~~~~~~~i----wDt~G~e~~~~~~~~~~~~~~~vilvyDit~~~Sf~~l~~w~~~i~~~ 136 (179)
+.|.+.|.||+|.++..+.+.++ +..+ |||+|+++|..++..||+++|++|+|||+++++||+++..|+..+.+.
T Consensus 3 ~~F~~~~~~Tig~~~~~~~~~~~-~~~v~l~iwDt~G~e~~~~~~~~~~~~ad~~ilv~D~t~~~sf~~~~~w~~~i~~~ 81 (176)
T PTZ00099 3 DTFDNNYQSTIGIDFLSKTLYLD-EGPVRLQLWDTAGQERFRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNE 81 (176)
T ss_pred CCcCCCCCCccceEEEEEEEEEC-CEEEEEEEEECCChHHhhhccHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHh
Confidence 45778899999999988888888 7776 999999999999999999999999999999999999999999999876
Q ss_pred hCCccCccccceEEEEeeCCCcCCCCCCCHHHHHHHHhhhC
Q psy15036 137 DGALFTHFELQIVFMRGCLELLQRCREVVTPDQIMFGSTQS 177 (179)
Q Consensus 137 ~~~~~~~~~~~~iilvGnK~Dl~~~r~Vs~~e~~~~a~~~~ 177 (179)
.... .|++|||||+||.+.|.|+.+++..++++..
T Consensus 82 ~~~~------~piilVgNK~DL~~~~~v~~~e~~~~~~~~~ 116 (176)
T PTZ00099 82 RGKD------VIIALVGNKTDLGDLRKVTYEEGMQKAQEYN 116 (176)
T ss_pred cCCC------CeEEEEEECcccccccCCCHHHHHHHHHHcC
Confidence 5433 6889999999998888999999999987654
No 66
>PTZ00369 Ras-like protein; Provisional
Probab=99.90 E-value=6e-23 Score=156.59 Aligned_cols=128 Identities=14% Similarity=0.159 Sum_probs=108.8
Q ss_pred eeEEE-EeCCCCc---eeEeee-ccCCCcccCcceeeeeEEEEEecCCCee----eeCCCchhchhhhhhhhcCCcEEEE
Q psy15036 43 NFGTQ-LGRRGIP---LLKHLK-YLGTGTHGKTVGIVFPAISVTYSIGPRY----FRFPLVSRFLSLTTGLYRGTMGFLL 113 (179)
Q Consensus 43 ~~Kiv-lG~~gvG---~~~~~~-~~~~~~~~~Ti~~~~~~k~v~~~~~~~i----wDt~G~e~~~~~~~~~~~~~~~vil 113 (179)
.+||+ +|++||| ++.++. ..+...+.||++..+ .+.+.++ +..+ |||+|+++|..++..|+++++++++
T Consensus 5 ~~Ki~iiG~~~~GKTsLi~~~~~~~~~~~~~~t~~~~~-~~~~~~~-~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~iil 82 (189)
T PTZ00369 5 EYKLVVVGGGGVGKSALTIQFIQNHFIDEYDPTIEDSY-RKQCVID-EETCLLDILDTAGQEEYSAMRDQYMRTGQGFLC 82 (189)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCcCcCCchhhEE-EEEEEEC-CEEEEEEEEeCCCCccchhhHHHHhhcCCEEEE
Confidence 58998 9999999 555544 667788899998766 4677787 7665 9999999999999999999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCCCCCCCHHHHHHHHhhhC
Q psy15036 114 IFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQRCREVVTPDQIMFGSTQS 177 (179)
Q Consensus 114 vyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~~r~Vs~~e~~~~a~~~~ 177 (179)
|||+++++||+++..|+..+.+..... ..|+++||||+|+.+++.++.+++.++++...
T Consensus 83 v~D~s~~~s~~~~~~~~~~i~~~~~~~-----~~piiiv~nK~Dl~~~~~i~~~~~~~~~~~~~ 141 (189)
T PTZ00369 83 VYSITSRSSFEEIASFREQILRVKDKD-----RVPMILVGNKCDLDSERQVSTGEGQELAKSFG 141 (189)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCC-----CCCEEEEEECcccccccccCHHHHHHHHHHhC
Confidence 999999999999999999998764331 16889999999998888999999999987653
No 67
>KOG4252|consensus
Probab=99.90 E-value=1.6e-24 Score=160.90 Aligned_cols=132 Identities=14% Similarity=0.154 Sum_probs=120.2
Q ss_pred cccCceeeEEE-EeCCCCc---eeEeee-ccCCCcccCcceeeeeEEEEEecCCCee----eeCCCchhchhhhhhhhcC
Q psy15036 37 AKEFSFNFGTQ-LGRRGIP---LLKHLK-YLGTGTHGKTVGIVFPAISVTYSIGPRY----FRFPLVSRFLSLTTGLYRG 107 (179)
Q Consensus 37 ~~~~~~~~Kiv-lG~~gvG---~~~~~~-~~~~~~~~~Ti~~~~~~k~v~~~~~~~i----wDt~G~e~~~~~~~~~~~~ 107 (179)
.++++.-+|+| +|+.+|| ++++++ +.|...|..|||++|..+.+.+. ++.+ ||++||++|..+...|||+
T Consensus 14 e~d~e~aiK~vivGng~VGKssmiqryCkgifTkdykktIgvdflerqi~v~-~Edvr~mlWdtagqeEfDaItkAyyrg 92 (246)
T KOG4252|consen 14 ETDYERAIKFVIVGNGSVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIKVL-IEDVRSMLWDTAGQEEFDAITKAYYRG 92 (246)
T ss_pred chhhhhhEEEEEECCCccchHHHHHHHhccccccccccccchhhhhHHHHhh-HHHHHHHHHHhccchhHHHHHHHHhcc
Confidence 34778889998 9999999 666666 89999999999999998888887 6666 9999999999999999999
Q ss_pred CcEEEEEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCCCCCCCHHHHHHHHhhh
Q psy15036 108 TMGFLLIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQRCREVVTPDQIMFGSTQ 176 (179)
Q Consensus 108 ~~~vilvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~~r~Vs~~e~~~~a~~~ 176 (179)
|.+.+|||+-+++.||+.+..|.+.+...... +|.++|-||+||.+..++..+|+..+|+..
T Consensus 93 aqa~vLVFSTTDr~SFea~~~w~~kv~~e~~~-------IPtV~vqNKIDlveds~~~~~evE~lak~l 154 (246)
T KOG4252|consen 93 AQASVLVFSTTDRYSFEATLEWYNKVQKETER-------IPTVFVQNKIDLVEDSQMDKGEVEGLAKKL 154 (246)
T ss_pred ccceEEEEecccHHHHHHHHHHHHHHHHHhcc-------CCeEEeeccchhhHhhhcchHHHHHHHHHh
Confidence 99999999999999999999999999987766 688899999999999999999999998864
No 68
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=99.90 E-value=5.6e-23 Score=152.59 Aligned_cols=126 Identities=16% Similarity=0.192 Sum_probs=106.8
Q ss_pred eEEE-EeCCCCc---eeEeee-ccCCCcccCcceeeeeEEEEEecCCCee----eeCCCchhchhhhhhhhcCCcEEEEE
Q psy15036 44 FGTQ-LGRRGIP---LLKHLK-YLGTGTHGKTVGIVFPAISVTYSIGPRY----FRFPLVSRFLSLTTGLYRGTMGFLLI 114 (179)
Q Consensus 44 ~Kiv-lG~~gvG---~~~~~~-~~~~~~~~~Ti~~~~~~k~v~~~~~~~i----wDt~G~e~~~~~~~~~~~~~~~vilv 114 (179)
+||+ +|++||| ++.++. +.+.+.+.||++..+ .+.+.++ +..+ |||+|+++|..++..+++++|++++|
T Consensus 2 ~ki~~~G~~~~GKTsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~-~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv 79 (164)
T cd04175 2 YKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSY-RKQVEVD-GQQCMLEILDTAGTEQFTAMRDLYMKNGQGFVLV 79 (164)
T ss_pred cEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchheE-EEEEEEC-CEEEEEEEEECCCcccchhHHHHHHhhCCEEEEE
Confidence 6897 9999999 544444 667788899998665 4667777 6655 99999999999999999999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHHHhC-CccCccccceEEEEeeCCCcCCCCCCCHHHHHHHHhhhC
Q psy15036 115 FDVTNENSFKDVEKWLLQIKVMDG-ALFTHFELQIVFMRGCLELLQRCREVVTPDQIMFGSTQS 177 (179)
Q Consensus 115 yDit~~~Sf~~l~~w~~~i~~~~~-~~~~~~~~~~iilvGnK~Dl~~~r~Vs~~e~~~~a~~~~ 177 (179)
||+++++||+++..|+..+.+... .+ .|+++||||+|+.+++.++.+++.+++++.+
T Consensus 80 ~d~~~~~s~~~~~~~~~~i~~~~~~~~------~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~ 137 (164)
T cd04175 80 YSITAQSTFNDLQDLREQILRVKDTED------VPMILVGNKCDLEDERVVGKEQGQNLARQWG 137 (164)
T ss_pred EECCCHHHHHHHHHHHHHHHHhcCCCC------CCEEEEEECCcchhccEEcHHHHHHHHHHhC
Confidence 999999999999999999986542 23 6899999999998888899999999987654
No 69
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=99.89 E-value=1.1e-22 Score=150.46 Aligned_cols=127 Identities=27% Similarity=0.423 Sum_probs=110.9
Q ss_pred eEEE-EeCCCCc---eeEeee-ccCCCcccCcceeeeeEEEEEecCCCee----eeCCCchhchhhhhhhhcCCcEEEEE
Q psy15036 44 FGTQ-LGRRGIP---LLKHLK-YLGTGTHGKTVGIVFPAISVTYSIGPRY----FRFPLVSRFLSLTTGLYRGTMGFLLI 114 (179)
Q Consensus 44 ~Kiv-lG~~gvG---~~~~~~-~~~~~~~~~Ti~~~~~~k~v~~~~~~~i----wDt~G~e~~~~~~~~~~~~~~~vilv 114 (179)
+||+ +|+++|| +++++. ..+...+.+|++.++..+.+.++ +..+ ||++|+++|..+++.++++++++++|
T Consensus 1 ~ki~v~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~l~D~~G~~~~~~~~~~~~~~~~~~i~v 79 (161)
T cd04113 1 FKFIIIGSSGTGKSCLLHRFVENKFKEDSQHTIGVEFGSKIIRVG-GKRVKLQIWDTAGQERFRSVTRSYYRGAAGALLV 79 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEEC-CEEEEEEEEECcchHHHHHhHHHHhcCCCEEEEE
Confidence 5897 9999999 565555 55677888999988888888887 7654 99999999999999999999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCCCCCCCHHHHHHHHhhhC
Q psy15036 115 FDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQRCREVVTPDQIMFGSTQS 177 (179)
Q Consensus 115 yDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~~r~Vs~~e~~~~a~~~~ 177 (179)
||+++++||.++..|+.+++.....+ .|+++||||.|+.+++.++.+++..+++...
T Consensus 80 ~d~~~~~s~~~~~~~~~~~~~~~~~~------~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~ 136 (161)
T cd04113 80 YDITNRTSFEALPTWLSDARALASPN------IVVILVGNKSDLADQREVTFLEASRFAQENG 136 (161)
T ss_pred EECCCHHHHHHHHHHHHHHHHhCCCC------CeEEEEEEchhcchhccCCHHHHHHHHHHcC
Confidence 99999999999999999998776554 6899999999998888999999999988754
No 70
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=99.89 E-value=1.6e-22 Score=149.89 Aligned_cols=126 Identities=15% Similarity=0.242 Sum_probs=106.8
Q ss_pred eEEE-EeCCCCc---eeEeeec---cCCCcccCcceeeeeEEEEEecCCCee----eeCCCchhchhhhhhhhcCCcEEE
Q psy15036 44 FGTQ-LGRRGIP---LLKHLKY---LGTGTHGKTVGIVFPAISVTYSIGPRY----FRFPLVSRFLSLTTGLYRGTMGFL 112 (179)
Q Consensus 44 ~Kiv-lG~~gvG---~~~~~~~---~~~~~~~~Ti~~~~~~k~v~~~~~~~i----wDt~G~e~~~~~~~~~~~~~~~vi 112 (179)
+||+ +|++||| ++.++.. .+.+++.+|+|.++..+.+.++.+..+ ||++|++++..+...+++++|+++
T Consensus 1 ~ki~vvG~~~~GKtsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii 80 (164)
T cd04101 1 LRCAVVGDPAVGKTAFVQMFHSNGAVFPKNYLMTTGCDFVVKEVPVDTDNTVELFIFDSAGQELYSDMVSNYWESPSVFI 80 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcCccCCCceEEEEEEEEEEeCCCCEEEEEEEECCCHHHHHHHHHHHhCCCCEEE
Confidence 4887 9999999 5555542 477889999999988777777523444 999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCCCCCCCHHHHHHHHhhh
Q psy15036 113 LIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQRCREVVTPDQIMFGSTQ 176 (179)
Q Consensus 113 lvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~~r~Vs~~e~~~~a~~~ 176 (179)
+|||+++++||+++..|++.+.+.... +|+++||||+|+.++++++.++++.++...
T Consensus 81 ~v~d~~~~~s~~~~~~~~~~~~~~~~~-------~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~ 137 (164)
T cd04101 81 LVYDVSNKASFENCSRWVNKVRTASKH-------MPGVLVGNKMDLADKAEVTDAQAQAFAQAN 137 (164)
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhCCC-------CCEEEEEECcccccccCCCHHHHHHHHHHc
Confidence 999999999999999999999876533 688899999999888889998888887654
No 71
>cd04143 Rhes_like Rhes_like subfamily. This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l
Probab=99.89 E-value=8.4e-23 Score=162.39 Aligned_cols=130 Identities=15% Similarity=0.071 Sum_probs=106.8
Q ss_pred eEEE-EeCCCCc---eeEee-eccCCCcccCcceeeeeEEEEEecCCCee----eeCCCchhchhhhhhhhcCCcEEEEE
Q psy15036 44 FGTQ-LGRRGIP---LLKHL-KYLGTGTHGKTVGIVFPAISVTYSIGPRY----FRFPLVSRFLSLTTGLYRGTMGFLLI 114 (179)
Q Consensus 44 ~Kiv-lG~~gvG---~~~~~-~~~~~~~~~~Ti~~~~~~k~v~~~~~~~i----wDt~G~e~~~~~~~~~~~~~~~vilv 114 (179)
+||+ +|+.||| ++.++ .+.+...|.||++ ++..+.+.++ +..+ |||+|++.|..++..+++++|++|+|
T Consensus 1 ~KVvvlG~~gvGKTSLi~r~~~~~f~~~y~pTi~-d~~~k~~~i~-~~~~~l~I~Dt~G~~~~~~~~~~~~~~ad~iIlV 78 (247)
T cd04143 1 YRMVVLGASKVGKTAIVSRFLGGRFEEQYTPTIE-DFHRKLYSIR-GEVYQLDILDTSGNHPFPAMRRLSILTGDVFILV 78 (247)
T ss_pred CEEEEECcCCCCHHHHHHHHHcCCCCCCCCCChh-HhEEEEEEEC-CEEEEEEEEECCCChhhhHHHHHHhccCCEEEEE
Confidence 5897 9999999 66555 4677888999997 6667788888 7665 99999999999999999999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHHHhCC---ccCccccceEEEEeeCCCcCCCCCCCHHHHHHHHhh
Q psy15036 115 FDVTNENSFKDVEKWLLQIKVMDGA---LFTHFELQIVFMRGCLELLQRCREVVTPDQIMFGST 175 (179)
Q Consensus 115 yDit~~~Sf~~l~~w~~~i~~~~~~---~~~~~~~~~iilvGnK~Dl~~~r~Vs~~e~~~~a~~ 175 (179)
||+++++||+++..|++++.+.... ........|+||||||+|+..+|+++.+++.+++..
T Consensus 79 fdv~~~~Sf~~i~~~~~~I~~~k~~~~~~~~~~~~~piIivgNK~Dl~~~~~v~~~ei~~~~~~ 142 (247)
T cd04143 79 FSLDNRESFEEVCRLREQILETKSCLKNKTKENVKIPMVICGNKADRDFPREVQRDEVEQLVGG 142 (247)
T ss_pred EeCCCHHHHHHHHHHHHHHHHhhcccccccccCCCCcEEEEEECccchhccccCHHHHHHHHHh
Confidence 9999999999999999999765321 000001268899999999988889999999988754
No 72
>cd04103 Centaurin_gamma Centaurin gamma. The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.
Probab=99.89 E-value=1.1e-22 Score=151.32 Aligned_cols=121 Identities=12% Similarity=0.049 Sum_probs=96.9
Q ss_pred eEEE-EeCCCCc---eeEe-eeccCCCcccCcceeeeeEEEEEecCCCee----eeCCCchhchhhhhhhhcCCcEEEEE
Q psy15036 44 FGTQ-LGRRGIP---LLKH-LKYLGTGTHGKTVGIVFPAISVTYSIGPRY----FRFPLVSRFLSLTTGLYRGTMGFLLI 114 (179)
Q Consensus 44 ~Kiv-lG~~gvG---~~~~-~~~~~~~~~~~Ti~~~~~~k~v~~~~~~~i----wDt~G~e~~~~~~~~~~~~~~~vilv 114 (179)
+||+ +|++||| ++.+ +...|.+.+.|+. ..+ .+.+.++ +..+ ||++|++. ..|++++|++++|
T Consensus 1 ~ki~vvG~~gvGKTsli~~~~~~~f~~~~~~~~-~~~-~~~i~~~-~~~~~l~i~D~~g~~~-----~~~~~~~~~~ilv 72 (158)
T cd04103 1 LKLGIVGNLQSGKSALVHRYLTGSYVQLESPEG-GRF-KKEVLVD-GQSHLLLIRDEGGAPD-----AQFASWVDAVIFV 72 (158)
T ss_pred CEEEEECCCCCcHHHHHHHHHhCCCCCCCCCCc-cce-EEEEEEC-CEEEEEEEEECCCCCc-----hhHHhcCCEEEEE
Confidence 4887 9999999 5544 4466666666654 345 4778888 7665 99999975 3578999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcC--CCCCCCHHHHHHHHhhhC
Q psy15036 115 FDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQ--RCREVVTPDQIMFGSTQS 177 (179)
Q Consensus 115 yDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~--~~r~Vs~~e~~~~a~~~~ 177 (179)
||+++++||+++..|++++.+..... .+|++|||||+||. .+|.|+.++++++|+++.
T Consensus 73 ~d~~~~~sf~~~~~~~~~i~~~~~~~-----~~piilvgnK~Dl~~~~~~~v~~~~~~~~~~~~~ 132 (158)
T cd04103 73 FSLENEASFQTVYNLYHQLSSYRNIS-----EIPLILVGTQDAISESNPRVIDDARARQLCADMK 132 (158)
T ss_pred EECCCHHHHHHHHHHHHHHHHhcCCC-----CCCEEEEeeHHHhhhcCCcccCHHHHHHHHHHhC
Confidence 99999999999999999998765321 16899999999995 478999999999998653
No 73
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=99.89 E-value=2e-22 Score=150.14 Aligned_cols=129 Identities=14% Similarity=0.117 Sum_probs=105.0
Q ss_pred eEEE-EeCCCCc---eeEeee-ccCCCcccCcceeeeeEEEEEecCCCee----eeCCCchhchhhhhhhhcCCcEEEEE
Q psy15036 44 FGTQ-LGRRGIP---LLKHLK-YLGTGTHGKTVGIVFPAISVTYSIGPRY----FRFPLVSRFLSLTTGLYRGTMGFLLI 114 (179)
Q Consensus 44 ~Kiv-lG~~gvG---~~~~~~-~~~~~~~~~Ti~~~~~~k~v~~~~~~~i----wDt~G~e~~~~~~~~~~~~~~~vilv 114 (179)
+||+ +|++||| ++.++. +.+...+.||++..+ .+.+..+ +..+ |||+|+++|..++..++++++++++|
T Consensus 2 ~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~-~~~~~~~-~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv 79 (165)
T cd04140 2 YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTY-RQVISCS-KNICTLQITDTTGSHQFPAMQRLSISKGHAFILV 79 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCCCcCCcchheE-EEEEEEC-CEEEEEEEEECCCCCcchHHHHHHhhcCCEEEEE
Confidence 7897 9999999 555554 667778889988555 3555555 5443 99999999999999999999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCCCCCCCHHHHHHHHhhhC
Q psy15036 115 FDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQRCREVVTPDQIMFGSTQS 177 (179)
Q Consensus 115 yDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~~r~Vs~~e~~~~a~~~~ 177 (179)
||+++++||+++..|++.+++...... +..|++|||||+|+.++|++..+++..++....
T Consensus 80 ~d~~~~~s~~~~~~~~~~i~~~~~~~~---~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~ 139 (165)
T cd04140 80 YSVTSKQSLEELKPIYELICEIKGNNI---EKIPIMLVGNKCDESHKREVSSNEGAACATEWN 139 (165)
T ss_pred EECCCHHHHHHHHHHHHHHHHHhcCCC---CCCCEEEEEECccccccCeecHHHHHHHHHHhC
Confidence 999999999999999998887653210 126889999999998889999999998887653
No 74
>cd04130 Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,
Probab=99.89 E-value=1.6e-22 Score=151.80 Aligned_cols=125 Identities=19% Similarity=0.185 Sum_probs=103.6
Q ss_pred eEEE-EeCCCCc---eeEeee-ccCCCcccCcceeeeeEEEEEecCCCee----eeCCCchhchhhhhhhhcCCcEEEEE
Q psy15036 44 FGTQ-LGRRGIP---LLKHLK-YLGTGTHGKTVGIVFPAISVTYSIGPRY----FRFPLVSRFLSLTTGLYRGTMGFLLI 114 (179)
Q Consensus 44 ~Kiv-lG~~gvG---~~~~~~-~~~~~~~~~Ti~~~~~~k~v~~~~~~~i----wDt~G~e~~~~~~~~~~~~~~~vilv 114 (179)
+|++ +|++||| ++.++. ..+..++.||.. +.+...+.++ +..+ ||++|+++|..+++.+++++|++|+|
T Consensus 1 ~k~~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~~-~~~~~~~~~~-~~~~~~~i~Dt~G~~~~~~~~~~~~~~a~~~i~v 78 (173)
T cd04130 1 LKCVLVGDGAVGKTSLIVSYTTNGYPTEYVPTAF-DNFSVVVLVD-GKPVRLQLCDTAGQDEFDKLRPLCYPDTDVFLLC 78 (173)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcee-eeeeEEEEEC-CEEEEEEEEECCCChhhccccccccCCCcEEEEE
Confidence 5887 9999999 554443 667788889875 4555667777 6554 99999999999999999999999999
Q ss_pred EeCCChhhHHHH-HHHHHHHHHHhCCccCccccceEEEEeeCCCcCC------------CCCCCHHHHHHHHhhhC
Q psy15036 115 FDVTNENSFKDV-EKWLLQIKVMDGALFTHFELQIVFMRGCLELLQR------------CREVVTPDQIMFGSTQS 177 (179)
Q Consensus 115 yDit~~~Sf~~l-~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~------------~r~Vs~~e~~~~a~~~~ 177 (179)
||+++++||+++ ..|+..+++..+. .|+++||||+||.. +|.|+.+++.++|++..
T Consensus 79 ~d~~~~~sf~~~~~~~~~~~~~~~~~-------~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~ 147 (173)
T cd04130 79 FSVVNPSSFQNISEKWIPEIRKHNPK-------APIILVGTQADLRTDVNVLIQLARYGEKPVSQSRAKALAEKIG 147 (173)
T ss_pred EECCCHHHHHHHHHHHHHHHHhhCCC-------CCEEEEeeChhhccChhHHHHHhhcCCCCcCHHHHHHHHHHhC
Confidence 999999999999 4799998865433 68899999999953 68899999999998754
No 75
>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.88 E-value=1.6e-22 Score=151.79 Aligned_cols=127 Identities=13% Similarity=0.035 Sum_probs=106.4
Q ss_pred eeeEEE-EeCCCCc---eeEeee-ccCC-CcccCcceeeeeEEEEEecCCCee----eeCCCchhchhhhhhhhcCCcEE
Q psy15036 42 FNFGTQ-LGRRGIP---LLKHLK-YLGT-GTHGKTVGIVFPAISVTYSIGPRY----FRFPLVSRFLSLTTGLYRGTMGF 111 (179)
Q Consensus 42 ~~~Kiv-lG~~gvG---~~~~~~-~~~~-~~~~~Ti~~~~~~k~v~~~~~~~i----wDt~G~e~~~~~~~~~~~~~~~v 111 (179)
..+||+ +|++||| ++.++. ..+. ..|.||++.++..+.+.++ +..+ ||++|++++..++..||+++|++
T Consensus 3 ~~~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~~T~~~~~~~~~~~~~-~~~~~l~~~d~~g~~~~~~~~~~~~~~~d~~ 81 (169)
T cd01892 3 NVFLCFVLGAKGSGKSALLRAFLGRSFSLNAYSPTIKPRYAVNTVEVY-GQEKYLILREVGEDEVAILLNDAELAACDVA 81 (169)
T ss_pred eEEEEEEECCCCCcHHHHHHHHhCCCCCcccCCCccCcceEEEEEEEC-CeEEEEEEEecCCcccccccchhhhhcCCEE
Confidence 468998 9999999 555554 5676 8899999988877788888 7654 99999999999999999999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCCCCCCCHHHHHHHHhhhC
Q psy15036 112 LLIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQRCREVVTPDQIMFGSTQS 177 (179)
Q Consensus 112 ilvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~~r~Vs~~e~~~~a~~~~ 177 (179)
++|||+++++||+++..|+..+... .+ .|+++||||+|+.+++++..+++.+++++.+
T Consensus 82 llv~d~~~~~s~~~~~~~~~~~~~~--~~------~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~ 139 (169)
T cd01892 82 CLVYDSSDPKSFSYCAEVYKKYFML--GE------IPCLFVAAKADLDEQQQRYEVQPDEFCRKLG 139 (169)
T ss_pred EEEEeCCCHHHHHHHHHHHHHhccC--CC------CeEEEEEEcccccccccccccCHHHHHHHcC
Confidence 9999999999999999999876432 12 6899999999998777777777788877654
No 76
>cd04132 Rho4_like Rho4-like subfamily. Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.88 E-value=3.5e-22 Score=151.50 Aligned_cols=126 Identities=17% Similarity=0.142 Sum_probs=102.3
Q ss_pred eEEE-EeCCCCc---eeEeee-ccCCCcccCcceeeeeEEEEEecCCCee----eeCCCchhchhhhhhhhcCCcEEEEE
Q psy15036 44 FGTQ-LGRRGIP---LLKHLK-YLGTGTHGKTVGIVFPAISVTYSIGPRY----FRFPLVSRFLSLTTGLYRGTMGFLLI 114 (179)
Q Consensus 44 ~Kiv-lG~~gvG---~~~~~~-~~~~~~~~~Ti~~~~~~k~v~~~~~~~i----wDt~G~e~~~~~~~~~~~~~~~vilv 114 (179)
+||+ +|+.||| +++++. ..+.+.+.||++.++. +.+...++..+ |||+|+++|..+++.+++++|++|+|
T Consensus 1 ~ki~vvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~-~~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~v 79 (187)
T cd04132 1 KKIVVVGDGGCGKTCLLIVYSQGKFPEEYVPTVFENYV-TNIQGPNGKIIELALWDTAGQEEYDRLRPLSYPDVDVLLIC 79 (187)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCCCCCCeeeeeeE-EEEEecCCcEEEEEEEECCCchhHHHHHHHhCCCCCEEEEE
Confidence 4887 9999999 555554 6677888999987764 34555324444 99999999999999999999999999
Q ss_pred EeCCChhhHHHHH-HHHHHHHHHhCCccCccccceEEEEeeCCCcCCC----CCCCHHHHHHHHhhhC
Q psy15036 115 FDVTNENSFKDVE-KWLLQIKVMDGALFTHFELQIVFMRGCLELLQRC----REVVTPDQIMFGSTQS 177 (179)
Q Consensus 115 yDit~~~Sf~~l~-~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~~----r~Vs~~e~~~~a~~~~ 177 (179)
||+++++||+++. .|+..+....+. .|+++||||+||..+ +.++.+++.+++....
T Consensus 80 ~d~~~~~s~~~~~~~~~~~~~~~~~~-------~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~~~ 140 (187)
T cd04132 80 YAVDNPTSLDNVEDKWFPEVNHFCPG-------TPIMLVGLKTDLRKDKNLDRKVTPAQAESVAKKQG 140 (187)
T ss_pred EECCCHHHHHHHHHHHHHHHHHhCCC-------CCEEEEEeChhhhhCccccCCcCHHHHHHHHHHcC
Confidence 9999999999995 699888765443 688999999999653 4688999999988764
No 77
>PLN03118 Rab family protein; Provisional
Probab=99.88 E-value=7.8e-22 Score=152.93 Aligned_cols=135 Identities=20% Similarity=0.385 Sum_probs=110.6
Q ss_pred cccCceeeEEE-EeCCCCc---eeEeeeccCCCcccCcceeeeeEEEEEecCCCee----eeCCCchhchhhhhhhhcCC
Q psy15036 37 AKEFSFNFGTQ-LGRRGIP---LLKHLKYLGTGTHGKTVGIVFPAISVTYSIGPRY----FRFPLVSRFLSLTTGLYRGT 108 (179)
Q Consensus 37 ~~~~~~~~Kiv-lG~~gvG---~~~~~~~~~~~~~~~Ti~~~~~~k~v~~~~~~~i----wDt~G~e~~~~~~~~~~~~~ 108 (179)
...+...+||+ +|+.||| ++..+.......+.||.+.++..+.+.++ +..+ |||+|+++|..++..+++++
T Consensus 8 ~~~~~~~~kv~ivG~~~vGKTsli~~l~~~~~~~~~~t~~~~~~~~~~~~~-~~~~~l~l~Dt~G~~~~~~~~~~~~~~~ 86 (211)
T PLN03118 8 SSGYDLSFKILLIGDSGVGKSSLLVSFISSSVEDLAPTIGVDFKIKQLTVG-GKRLKLTIWDTAGQERFRTLTSSYYRNA 86 (211)
T ss_pred ccccCcceEEEEECcCCCCHHHHHHHHHhCCCCCcCCCceeEEEEEEEEEC-CEEEEEEEEECCCchhhHHHHHHHHhcC
Confidence 34566789998 9999999 66565544446788999988877788887 6554 99999999999999999999
Q ss_pred cEEEEEEeCCChhhHHHHHH-HHHHHHHHhCCccCccccceEEEEeeCCCcCCCCCCCHHHHHHHHhhhC
Q psy15036 109 MGFLLIFDVTNENSFKDVEK-WLLQIKVMDGALFTHFELQIVFMRGCLELLQRCREVVTPDQIMFGSTQS 177 (179)
Q Consensus 109 ~~vilvyDit~~~Sf~~l~~-w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~~r~Vs~~e~~~~a~~~~ 177 (179)
|++|+|||+++++||+++.. |...+....... ..|+++||||+|+..++.++.+++.+++.+..
T Consensus 87 d~~vlv~D~~~~~sf~~~~~~~~~~~~~~~~~~-----~~~~ilv~NK~Dl~~~~~i~~~~~~~~~~~~~ 151 (211)
T PLN03118 87 QGIILVYDVTRRETFTNLSDVWGKEVELYSTNQ-----DCVKMLVGNKVDRESERDVSREEGMALAKEHG 151 (211)
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCC-----CCCEEEEEECccccccCccCHHHHHHHHHHcC
Confidence 99999999999999999965 777776544321 15788999999998888999999999988654
No 78
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=99.88 E-value=6.3e-22 Score=148.01 Aligned_cols=123 Identities=20% Similarity=0.291 Sum_probs=101.3
Q ss_pred eEEE-EeCCCCc---eeEeee-ccCCCcccCcceeeeeEEEEEecCCCee----eeCCCchhchhhhhhhhcCCcEEEEE
Q psy15036 44 FGTQ-LGRRGIP---LLKHLK-YLGTGTHGKTVGIVFPAISVTYSIGPRY----FRFPLVSRFLSLTTGLYRGTMGFLLI 114 (179)
Q Consensus 44 ~Kiv-lG~~gvG---~~~~~~-~~~~~~~~~Ti~~~~~~k~v~~~~~~~i----wDt~G~e~~~~~~~~~~~~~~~vilv 114 (179)
+||+ +|+.||| ++.++. ..+...+.||++.++....+..+ +..+ |||+|++++..++..+++.+|++|+|
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~-~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v 79 (166)
T cd00877 1 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLDFHTN-RGKIRFNVWDTAGQEKFGGLRDGYYIGGQCAIIM 79 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEEC-CEEEEEEEEECCCChhhccccHHHhcCCCEEEEE
Confidence 5897 9999999 555544 66677899999988876666666 5554 99999999999999999999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCCCCCCCHHHHHHHHhhh
Q psy15036 115 FDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQRCREVVTPDQIMFGSTQ 176 (179)
Q Consensus 115 yDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~~r~Vs~~e~~~~a~~~ 176 (179)
||+++++||+++..|++.+.+.... .|+++||||+|+.+ +.+.. ++.++++..
T Consensus 80 ~d~~~~~s~~~~~~~~~~i~~~~~~-------~piiiv~nK~Dl~~-~~~~~-~~~~~~~~~ 132 (166)
T cd00877 80 FDVTSRVTYKNVPNWHRDLVRVCGN-------IPIVLCGNKVDIKD-RKVKA-KQITFHRKK 132 (166)
T ss_pred EECCCHHHHHHHHHHHHHHHHhCCC-------CcEEEEEEchhccc-ccCCH-HHHHHHHHc
Confidence 9999999999999999999887653 68899999999973 45543 455666543
No 79
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=99.88 E-value=6.5e-22 Score=150.85 Aligned_cols=125 Identities=18% Similarity=0.294 Sum_probs=105.5
Q ss_pred eEEE-EeCCCCc---eeEeee-ccCC-CcccCcceeeeeEEEEEecCCCee----eeCCCchhchhhhhhhhcCCcEEEE
Q psy15036 44 FGTQ-LGRRGIP---LLKHLK-YLGT-GTHGKTVGIVFPAISVTYSIGPRY----FRFPLVSRFLSLTTGLYRGTMGFLL 113 (179)
Q Consensus 44 ~Kiv-lG~~gvG---~~~~~~-~~~~-~~~~~Ti~~~~~~k~v~~~~~~~i----wDt~G~e~~~~~~~~~~~~~~~vil 113 (179)
+||+ +|+++|| ++.++. ..+. ..+.+|++.++..+.+.++ +..+ ||++|++++..+...+++++|++++
T Consensus 1 ~ki~vvG~~~vGKSsLi~~~~~~~~~~~~~~~t~~~~~~~~~~~~~-~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~iil 79 (193)
T cd04118 1 VKVVMLGKESVGKTSLVERYVHHRFLVGPYQNTIGAAFVAKRMVVG-ERVVTLGIWDTAGSERYEAMSRIYYRGAKAAIV 79 (193)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCcCCcCcccceeeEEEEEEEEEC-CEEEEEEEEECCCchhhhhhhHhhcCCCCEEEE
Confidence 4887 9999999 555555 4554 3688999988877888888 7766 9999999999999999999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCC----CCCCCHHHHHHHHhhh
Q psy15036 114 IFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQR----CREVVTPDQIMFGSTQ 176 (179)
Q Consensus 114 vyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~----~r~Vs~~e~~~~a~~~ 176 (179)
|||+++++||+++..|++.++...+. .|+++||||+|+.+ .+.++.+++.+++.+.
T Consensus 80 v~d~~~~~s~~~~~~~~~~i~~~~~~-------~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~~ 139 (193)
T cd04118 80 CYDLTDSSSFERAKFWVKELQNLEEH-------CKIYLCGTKSDLIEQDRSLRQVDFHDVQDFADEI 139 (193)
T ss_pred EEECCCHHHHHHHHHHHHHHHhcCCC-------CCEEEEEEcccccccccccCccCHHHHHHHHHHc
Confidence 99999999999999999999876443 68999999999853 3678888898888764
No 80
>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases. Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.
Probab=99.88 E-value=3.7e-22 Score=149.40 Aligned_cols=123 Identities=19% Similarity=0.176 Sum_probs=102.4
Q ss_pred EEeCCCCc---eeEeee-ccCCCcccCcceeeeeEEEEEecCCCee----eeCCCchhchhhhhhhhcCCcEEEEEEeCC
Q psy15036 47 QLGRRGIP---LLKHLK-YLGTGTHGKTVGIVFPAISVTYSIGPRY----FRFPLVSRFLSLTTGLYRGTMGFLLIFDVT 118 (179)
Q Consensus 47 vlG~~gvG---~~~~~~-~~~~~~~~~Ti~~~~~~k~v~~~~~~~i----wDt~G~e~~~~~~~~~~~~~~~vilvyDit 118 (179)
|+|++||| ++.++. ..+...+.||++..+ ...+.++ +..+ |||+|+++|..+++.+++++|++|+|||++
T Consensus 3 i~G~~~vGKTsli~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~ 80 (174)
T smart00174 3 VVGDGAVGKTCLLISYTTNAFPEDYVPTVFENY-SADVEVD-GKPVELGLWDTAGQEDYDRLRPLSYPDTDVFLICFSVD 80 (174)
T ss_pred EECCCCCCHHHHHHHHHhCCCCCCCCCcEEeee-eEEEEEC-CEEEEEEEEECCCCcccchhchhhcCCCCEEEEEEECC
Confidence 49999999 554444 667788889987555 4567777 7665 999999999999999999999999999999
Q ss_pred ChhhHHHHH-HHHHHHHHHhCCccCccccceEEEEeeCCCcCCC------------CCCCHHHHHHHHhhhCC
Q psy15036 119 NENSFKDVE-KWLLQIKVMDGALFTHFELQIVFMRGCLELLQRC------------REVVTPDQIMFGSTQSS 178 (179)
Q Consensus 119 ~~~Sf~~l~-~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~~------------r~Vs~~e~~~~a~~~~~ 178 (179)
+++||+++. .|+..+.+..+. .|++|||||+|+..+ +.|+.+++.++|++++.
T Consensus 81 ~~~s~~~~~~~~~~~i~~~~~~-------~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 146 (174)
T smart00174 81 SPASFENVKEKWYPEVKHFCPN-------TPIILVGTKLDLREDKSTLRELSKQKQEPVTYEQGEALAKRIGA 146 (174)
T ss_pred CHHHHHHHHHHHHHHHHhhCCC-------CCEEEEecChhhhhChhhhhhhhcccCCCccHHHHHHHHHHcCC
Confidence 999999995 699999876544 688999999999653 34999999999988753
No 81
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=99.88 E-value=7.5e-22 Score=145.22 Aligned_cols=126 Identities=17% Similarity=0.202 Sum_probs=105.0
Q ss_pred eEEE-EeCCCCc---eeEeee-ccCCCcccCcceeeeeEEEEEecCCCee----eeCCCchhchhhhhhhhcCCcEEEEE
Q psy15036 44 FGTQ-LGRRGIP---LLKHLK-YLGTGTHGKTVGIVFPAISVTYSIGPRY----FRFPLVSRFLSLTTGLYRGTMGFLLI 114 (179)
Q Consensus 44 ~Kiv-lG~~gvG---~~~~~~-~~~~~~~~~Ti~~~~~~k~v~~~~~~~i----wDt~G~e~~~~~~~~~~~~~~~vilv 114 (179)
+||+ +|++||| ++.++. ..+...+.||++..+ .+.+.++ +..+ ||++|+++|+.++..|+++++++++|
T Consensus 2 ~ki~iiG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~-~~~~~~~i~Dt~G~~~~~~l~~~~~~~~~~~i~v 79 (162)
T cd04138 2 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSY-RKQVVID-GETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCV 79 (162)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCcCCcCCcchheE-EEEEEEC-CEEEEEEEEECCCCcchHHHHHHHHhcCCEEEEE
Confidence 6897 9999999 555555 567788889988655 5667777 6554 99999999999999999999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCCCCCCCHHHHHHHHhhhC
Q psy15036 115 FDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQRCREVVTPDQIMFGSTQS 177 (179)
Q Consensus 115 yDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~~r~Vs~~e~~~~a~~~~ 177 (179)
||+++++||+++..|+..+.+..... ..|+++||||+|+.+ +.+..+++.++++..+
T Consensus 80 ~~~~~~~s~~~~~~~~~~i~~~~~~~-----~~piivv~nK~Dl~~-~~~~~~~~~~~~~~~~ 136 (162)
T cd04138 80 FAINSRKSFEDIHTYREQIKRVKDSD-----DVPMVLVGNKCDLAA-RTVSSRQGQDLAKSYG 136 (162)
T ss_pred EECCCHHHHHHHHHHHHHHHHhcCCC-----CCCEEEEEECccccc-ceecHHHHHHHHHHhC
Confidence 99999999999999999998765321 168889999999976 6788889988887654
No 82
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=99.87 E-value=8.1e-22 Score=146.05 Aligned_cols=127 Identities=18% Similarity=0.201 Sum_probs=105.1
Q ss_pred eEEE-EeCCCCc---eeEeee-ccCCCcccCcceeeeeEEEEEecCCCee----eeCCCchhchhhhhhhhcCCcEEEEE
Q psy15036 44 FGTQ-LGRRGIP---LLKHLK-YLGTGTHGKTVGIVFPAISVTYSIGPRY----FRFPLVSRFLSLTTGLYRGTMGFLLI 114 (179)
Q Consensus 44 ~Kiv-lG~~gvG---~~~~~~-~~~~~~~~~Ti~~~~~~k~v~~~~~~~i----wDt~G~e~~~~~~~~~~~~~~~vilv 114 (179)
+||+ +|++||| ++.++. ..+...+.+|++..+ .+.+.++ +..+ |||+|+++|..++..+++.++++++|
T Consensus 1 ~ki~v~G~~~~GKTsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~-~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~i~v 78 (164)
T smart00173 1 YKLVVLGSGGVGKSALTIQFVQGHFVDDYDPTIEDSY-RKQIEID-GEVCLLDILDTAGQEEFSAMRDQYMRTGEGFLLV 78 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCcCCcccCCchhhhE-EEEEEEC-CEEEEEEEEECCCcccchHHHHHHHhhCCEEEEE
Confidence 5897 9999999 555555 556777888887443 4666677 6554 99999999999999999999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCCCCCCCHHHHHHHHhhhC
Q psy15036 115 FDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQRCREVVTPDQIMFGSTQS 177 (179)
Q Consensus 115 yDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~~r~Vs~~e~~~~a~~~~ 177 (179)
||+++++||+++..|...+.+..... ..|+++||||+|+..++.++.+++.+++++.+
T Consensus 79 ~d~~~~~s~~~~~~~~~~i~~~~~~~-----~~pii~v~nK~Dl~~~~~~~~~~~~~~~~~~~ 136 (164)
T smart00173 79 YSITDRQSFEEIKKFREQILRVKDRD-----DVPIVLVGNKCDLESERVVSTEEGKELARQWG 136 (164)
T ss_pred EECCCHHHHHHHHHHHHHHHHhcCCC-----CCCEEEEEECccccccceEcHHHHHHHHHHcC
Confidence 99999999999999999987654321 16888999999998888999999999987654
No 83
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=99.87 E-value=1.5e-21 Score=143.99 Aligned_cols=127 Identities=20% Similarity=0.273 Sum_probs=109.2
Q ss_pred eEEE-EeCCCCc---eeEeee-ccCCCcccCcceeeeeEEEEEecCCCee----eeCCCchhchhhhhhhhcCCcEEEEE
Q psy15036 44 FGTQ-LGRRGIP---LLKHLK-YLGTGTHGKTVGIVFPAISVTYSIGPRY----FRFPLVSRFLSLTTGLYRGTMGFLLI 114 (179)
Q Consensus 44 ~Kiv-lG~~gvG---~~~~~~-~~~~~~~~~Ti~~~~~~k~v~~~~~~~i----wDt~G~e~~~~~~~~~~~~~~~vilv 114 (179)
+||+ +|+++|| ++..+. ..+...+.++.+.++..+.+.++ +..+ ||++|++++..+...++++++++++|
T Consensus 1 ~ki~liG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~ii~v 79 (161)
T cd01861 1 HKLVFLGDQSVGKTSIITRFMYDTFDNQYQATIGIDFLSKTMYLE-DKTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVV 79 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCccCCCceeeeEEEEEEEEC-CEEEEEEEEECCCcHHHHHHHHHHhccCCEEEEE
Confidence 4887 9999999 555554 55666788999988888888888 7654 99999999999999999999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCCCCCCCHHHHHHHHhhhC
Q psy15036 115 FDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQRCREVVTPDQIMFGSTQS 177 (179)
Q Consensus 115 yDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~~r~Vs~~e~~~~a~~~~ 177 (179)
||+++++||+.+..|+..+......+ .|+++||||+|+.++++++.++...++++..
T Consensus 80 ~d~~~~~s~~~~~~~~~~~~~~~~~~------~~iilv~nK~D~~~~~~~~~~~~~~~~~~~~ 136 (161)
T cd01861 80 YDITNRQSFDNTDKWIDDVRDERGND------VIIVLVGNKTDLSDKRQVSTEEGEKKAKELN 136 (161)
T ss_pred EECcCHHHHHHHHHHHHHHHHhCCCC------CEEEEEEEChhccccCccCHHHHHHHHHHhC
Confidence 99999999999999999988765544 6899999999997778899999999887653
No 84
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=99.87 E-value=1e-21 Score=145.89 Aligned_cols=122 Identities=16% Similarity=0.257 Sum_probs=99.9
Q ss_pred eEEE-EeCCCCc---eeEeee-ccCCCcccCcceeeeeEEEEEecCCCee----eeCCCchhchhhhhhhhcCCcEEEEE
Q psy15036 44 FGTQ-LGRRGIP---LLKHLK-YLGTGTHGKTVGIVFPAISVTYSIGPRY----FRFPLVSRFLSLTTGLYRGTMGFLLI 114 (179)
Q Consensus 44 ~Kiv-lG~~gvG---~~~~~~-~~~~~~~~~Ti~~~~~~k~v~~~~~~~i----wDt~G~e~~~~~~~~~~~~~~~vilv 114 (179)
+||+ +|++||| ++.++. ..+.+.+.+|.+.++..+.+.++ +..+ |||+|+++|..+++.|++++|++++|
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v 79 (161)
T cd04124 1 VKIILLGDSAVGKSKLVERFLMDGYEPQQLSTYALTLYKHNAKFE-GKTILVDFWDTAGQERFQTMHASYYHKAHACILV 79 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCceeeEEEEEEEEEC-CEEEEEEEEeCCCchhhhhhhHHHhCCCCEEEEE
Confidence 5887 9999999 555444 66777788888888777777777 7665 99999999999999999999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCCCCCCCHHHHHHHHhhh
Q psy15036 115 FDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQRCREVVTPDQIMFGSTQ 176 (179)
Q Consensus 115 yDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~~r~Vs~~e~~~~a~~~ 176 (179)
||++++.||+++..|+..+++..+. .|+++||||+|+.. .+ .+++..++++.
T Consensus 80 ~d~~~~~s~~~~~~~~~~i~~~~~~-------~p~ivv~nK~Dl~~--~~-~~~~~~~~~~~ 131 (161)
T cd04124 80 FDVTRKITYKNLSKWYEELREYRPE-------IPCIVVANKIDLDP--SV-TQKKFNFAEKH 131 (161)
T ss_pred EECCCHHHHHHHHHHHHHHHHhCCC-------CcEEEEEECccCch--hH-HHHHHHHHHHc
Confidence 9999999999999999999876543 58899999999953 22 35566666543
No 85
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=99.87 E-value=3e-21 Score=142.73 Aligned_cols=128 Identities=19% Similarity=0.220 Sum_probs=105.5
Q ss_pred eeEEE-EeCCCCc---eeEeee-ccCCCcccCcceeeeeEEEEEecCCCee----eeCCCchhchhhhhhhhcCCcEEEE
Q psy15036 43 NFGTQ-LGRRGIP---LLKHLK-YLGTGTHGKTVGIVFPAISVTYSIGPRY----FRFPLVSRFLSLTTGLYRGTMGFLL 113 (179)
Q Consensus 43 ~~Kiv-lG~~gvG---~~~~~~-~~~~~~~~~Ti~~~~~~k~v~~~~~~~i----wDt~G~e~~~~~~~~~~~~~~~vil 113 (179)
.+||+ +|+++|| ++.++. ..+...+.+|++..+ .+.+.++ +..+ |||+|+++|..+...++++++++++
T Consensus 2 ~~ki~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~-~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~il 79 (164)
T cd04145 2 TYKLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIEDSY-TKQCEID-GQWAILDILDTAGQEEFSAMREQYMRTGEGFLL 79 (164)
T ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCCcccCCCccceE-EEEEEEC-CEEEEEEEEECCCCcchhHHHHHHHhhCCEEEE
Confidence 47997 9999999 544444 556777888887554 4566677 6544 9999999999999999999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCCCCCCCHHHHHHHHhhhC
Q psy15036 114 IFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQRCREVVTPDQIMFGSTQS 177 (179)
Q Consensus 114 vyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~~r~Vs~~e~~~~a~~~~ 177 (179)
|||+++++||+++..|+..+.+..... ..|+++||||+|+..++.++.+++.+++++.+
T Consensus 80 v~d~~~~~s~~~~~~~~~~~~~~~~~~-----~~piiiv~NK~Dl~~~~~~~~~~~~~~~~~~~ 138 (164)
T cd04145 80 VFSVTDRGSFEEVDKFHTQILRVKDRD-----EFPMILVGNKADLEHQRKVSREEGQELARKLK 138 (164)
T ss_pred EEECCCHHHHHHHHHHHHHHHHHhCCC-----CCCEEEEeeCccccccceecHHHHHHHHHHcC
Confidence 999999999999999999998764321 16889999999998888899999999987654
No 86
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=99.87 E-value=3.3e-21 Score=142.32 Aligned_cols=126 Identities=25% Similarity=0.476 Sum_probs=109.2
Q ss_pred eEEE-EeCCCCc---eeEeee-ccCCCcccCcceeeeeEEEEEecCCCee----eeCCCchhchhhhhhhhcCCcEEEEE
Q psy15036 44 FGTQ-LGRRGIP---LLKHLK-YLGTGTHGKTVGIVFPAISVTYSIGPRY----FRFPLVSRFLSLTTGLYRGTMGFLLI 114 (179)
Q Consensus 44 ~Kiv-lG~~gvG---~~~~~~-~~~~~~~~~Ti~~~~~~k~v~~~~~~~i----wDt~G~e~~~~~~~~~~~~~~~vilv 114 (179)
+||+ +|++++| +++++. ..+...+.+|++.++....+.++ +..+ ||++|+++|..+...+++++|++|+|
T Consensus 1 ~kv~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~ilv 79 (164)
T smart00175 1 FKIILIGDSGVGKSSLLSRFTDGKFSEQYKSTIGVDFKTKTIEVD-GKRVKLQIWDTAGQERFRSITSSYYRGAVGALLV 79 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEEC-CEEEEEEEEECCChHHHHHHHHHHhCCCCEEEEE
Confidence 5897 9999999 666665 44677788999988887788887 7544 99999999999999999999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCCCCCCCHHHHHHHHhhh
Q psy15036 115 FDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQRCREVVTPDQIMFGSTQ 176 (179)
Q Consensus 115 yDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~~r~Vs~~e~~~~a~~~ 176 (179)
||+++++||+.+..|+..+....... +|+++|+||+|+...+++..+++++++++.
T Consensus 80 ~d~~~~~s~~~~~~~l~~~~~~~~~~------~pivvv~nK~D~~~~~~~~~~~~~~~~~~~ 135 (164)
T smart00175 80 YDITNRESFENLKNWLKELREYADPN------VVIMLVGNKSDLEDQRQVSREEAEAFAEEH 135 (164)
T ss_pred EECCCHHHHHHHHHHHHHHHHhCCCC------CeEEEEEEchhcccccCCCHHHHHHHHHHc
Confidence 99999999999999999998876444 799999999999887889999999998764
No 87
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.87 E-value=5.5e-21 Score=142.23 Aligned_cols=130 Identities=26% Similarity=0.432 Sum_probs=110.9
Q ss_pred cCceeeEEE-EeCCCCc---eeEeee-ccCCCcccCcceeeeeEEEEEecCCCee----eeCCCchhchhhhhhhhcCCc
Q psy15036 39 EFSFNFGTQ-LGRRGIP---LLKHLK-YLGTGTHGKTVGIVFPAISVTYSIGPRY----FRFPLVSRFLSLTTGLYRGTM 109 (179)
Q Consensus 39 ~~~~~~Kiv-lG~~gvG---~~~~~~-~~~~~~~~~Ti~~~~~~k~v~~~~~~~i----wDt~G~e~~~~~~~~~~~~~~ 109 (179)
++.+.+||+ +|++||| ++..+. ..+...+.+|++.++..+.+.++ +..+ ||++|++.|......+++.+|
T Consensus 3 ~~~~~~~v~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~-~~~~~~~~~D~~g~~~~~~~~~~~~~~~d 81 (169)
T cd04114 3 DYDFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEIK-GEKIKLQIWDTAGQERFRSITQSYYRSAN 81 (169)
T ss_pred CCCceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEEC-CEEEEEEEEECCCcHHHHHHHHHHhcCCC
Confidence 345789997 9999999 555555 55666788999988887888888 7664 999999999999899999999
Q ss_pred EEEEEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCCCCCCCHHHHHHHHhh
Q psy15036 110 GFLLIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQRCREVVTPDQIMFGST 175 (179)
Q Consensus 110 ~vilvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~~r~Vs~~e~~~~a~~ 175 (179)
++++|||+++++||+.+..|+.+++...... .|+++||||+|+.+++++..+.++.+++.
T Consensus 82 ~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~------~~~i~v~NK~D~~~~~~i~~~~~~~~~~~ 141 (169)
T cd04114 82 ALILTYDITCEESFRCLPEWLREIEQYANNK------VITILVGNKIDLAERREVSQQRAEEFSDA 141 (169)
T ss_pred EEEEEEECcCHHHHHHHHHHHHHHHHhCCCC------CeEEEEEECcccccccccCHHHHHHHHHH
Confidence 9999999999999999999999998776554 68889999999988889998888887764
No 88
>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=99.86 E-value=2.3e-21 Score=149.34 Aligned_cols=125 Identities=18% Similarity=0.157 Sum_probs=101.2
Q ss_pred eEEE-EeCCCCc---eeEeee-ccCCCcccCcceeeeeEEEEEecCCCee----eeCCCchhchh--------hhhhhhc
Q psy15036 44 FGTQ-LGRRGIP---LLKHLK-YLGTGTHGKTVGIVFPAISVTYSIGPRY----FRFPLVSRFLS--------LTTGLYR 106 (179)
Q Consensus 44 ~Kiv-lG~~gvG---~~~~~~-~~~~~~~~~Ti~~~~~~k~v~~~~~~~i----wDt~G~e~~~~--------~~~~~~~ 106 (179)
+||+ +|+++|| ++.++. ..+...+.||++.++..+.+.++ +..+ |||+|.++|.. ....+++
T Consensus 1 ~kI~ivG~~~vGKTsLi~~~~~~~f~~~~~pt~~~~~~~~~i~~~-~~~~~l~i~Dt~G~~~~~~~~~~e~~~~~~~~~~ 79 (198)
T cd04142 1 VRVAVLGAPGVGKTAIVRQFLAQEFPEEYIPTEHRRLYRPAVVLS-GRVYDLHILDVPNMQRYPGTAGQEWMDPRFRGLR 79 (198)
T ss_pred CEEEEECCCCCcHHHHHHHHHcCCCCcccCCccccccceeEEEEC-CEEEEEEEEeCCCcccCCccchhHHHHHHHhhhc
Confidence 5887 9999999 555544 66788899999877776777777 7655 99999765532 2345689
Q ss_pred CCcEEEEEEeCCChhhHHHHHHHHHHHHHHh---CCccCccccceEEEEeeCCCcCCCCCCCHHHHHHHHhh
Q psy15036 107 GTMGFLLIFDVTNENSFKDVEKWLLQIKVMD---GALFTHFELQIVFMRGCLELLQRCREVVTPDQIMFGST 175 (179)
Q Consensus 107 ~~~~vilvyDit~~~Sf~~l~~w~~~i~~~~---~~~~~~~~~~~iilvGnK~Dl~~~r~Vs~~e~~~~a~~ 175 (179)
.+|++|+|||+++++||+.+..|++.+.+.. ..+ +|++|||||+|+..+|.++.+++.+++++
T Consensus 80 ~ad~iilv~D~~~~~S~~~~~~~~~~i~~~~~~~~~~------~piiivgNK~Dl~~~~~~~~~~~~~~~~~ 145 (198)
T cd04142 80 NSRAFILVYDICSPDSFHYVKLLRQQILETRPAGNKE------PPIVVVGNKRDQQRHRFAPRHVLSVLVRK 145 (198)
T ss_pred cCCEEEEEEECCCHHHHHHHHHHHHHHHHhcccCCCC------CCEEEEEECccccccccccHHHHHHHHHH
Confidence 9999999999999999999999999998764 233 68999999999988888999998888754
No 89
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=99.86 E-value=1.9e-21 Score=144.53 Aligned_cols=125 Identities=18% Similarity=0.224 Sum_probs=101.2
Q ss_pred EEE-EeCCCCc---eeEee-eccCCCcccCcceeeeeEEEEEecCCCee----eeCCCchhc-hhhhhhhhcCCcEEEEE
Q psy15036 45 GTQ-LGRRGIP---LLKHL-KYLGTGTHGKTVGIVFPAISVTYSIGPRY----FRFPLVSRF-LSLTTGLYRGTMGFLLI 114 (179)
Q Consensus 45 Kiv-lG~~gvG---~~~~~-~~~~~~~~~~Ti~~~~~~k~v~~~~~~~i----wDt~G~e~~-~~~~~~~~~~~~~vilv 114 (179)
||+ +|++||| ++.++ ...+...+.+|.+..+ .+.+.++ +..+ ||++|++++ ......+++.+|++|+|
T Consensus 1 ki~vvG~~~~GKtsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~-~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~v 78 (165)
T cd04146 1 KIAVLGASGVGKSALVVRFLTKRFIGEYDPNLESLY-SRQVTID-GEQVSLEILDTAGQQQADTEQLERSIRWADGFVLV 78 (165)
T ss_pred CEEEECCCCCcHHHHHHHHHhCccccccCCChHHhc-eEEEEEC-CEEEEEEEEECCCCcccccchHHHHHHhCCEEEEE
Confidence 576 9999999 44343 3556677888886544 4566777 7654 999999963 45677899999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHHHhC--CccCccccceEEEEeeCCCcCCCCCCCHHHHHHHHhhhC
Q psy15036 115 FDVTNENSFKDVEKWLLQIKVMDG--ALFTHFELQIVFMRGCLELLQRCREVVTPDQIMFGSTQS 177 (179)
Q Consensus 115 yDit~~~Sf~~l~~w~~~i~~~~~--~~~~~~~~~~iilvGnK~Dl~~~r~Vs~~e~~~~a~~~~ 177 (179)
||+++++||+++..|+..+.+... .+ .|+++||||+|+.+++.++.+++.++++..+
T Consensus 79 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~------~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~ 137 (165)
T cd04146 79 YSITDRSSFDEISQLKQLIREIKKRDRE------IPVILVGNKADLLHYRQVSTEEGEKLASELG 137 (165)
T ss_pred EECCCHHHHHHHHHHHHHHHHHhcCCCC------CCEEEEEECCchHHhCccCHHHHHHHHHHcC
Confidence 999999999999999999987653 22 6889999999998889999999999998754
No 90
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=99.86 E-value=8e-21 Score=140.42 Aligned_cols=128 Identities=20% Similarity=0.345 Sum_probs=109.6
Q ss_pred eeEEE-EeCCCCc---eeEeee-ccCCCcccCcceeeeeEEEEEecCCCee----eeCCCchhchhhhhhhhcCCcEEEE
Q psy15036 43 NFGTQ-LGRRGIP---LLKHLK-YLGTGTHGKTVGIVFPAISVTYSIGPRY----FRFPLVSRFLSLTTGLYRGTMGFLL 113 (179)
Q Consensus 43 ~~Kiv-lG~~gvG---~~~~~~-~~~~~~~~~Ti~~~~~~k~v~~~~~~~i----wDt~G~e~~~~~~~~~~~~~~~vil 113 (179)
.+||+ +|++++| ++.++. ..+...+.+|.+.++..+.+.++ +..+ ||++|++++..++..++++++++++
T Consensus 1 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~v~~~-~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~ 79 (163)
T cd01860 1 QFKLVLLGDSSVGKSSLVLRFVKNEFSENQESTIGAAFLTQTVNLD-DTTVKFEIWDTAGQERYRSLAPMYYRGAAAAIV 79 (163)
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEEC-CEEEEEEEEeCCchHHHHHHHHHHhccCCEEEE
Confidence 47997 9999999 555555 44556688999988877888888 7665 9999999999999999999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCCCCCCCHHHHHHHHhhhC
Q psy15036 114 IFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQRCREVVTPDQIMFGSTQS 177 (179)
Q Consensus 114 vyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~~r~Vs~~e~~~~a~~~~ 177 (179)
|||.++++||+.+..|+..+....... .|+++++||+|+...+.++.+++..++.+..
T Consensus 80 v~d~~~~~s~~~~~~~~~~~~~~~~~~------~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~ 137 (163)
T cd01860 80 VYDITSEESFEKAKSWVKELQRNASPN------IIIALVGNKADLESKRQVSTEEAQEYADENG 137 (163)
T ss_pred EEECcCHHHHHHHHHHHHHHHHhCCCC------CeEEEEEECccccccCcCCHHHHHHHHHHcC
Confidence 999999999999999999998776443 6888999999998888899999998887654
No 91
>cd04148 RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra
Probab=99.86 E-value=3.9e-21 Score=150.38 Aligned_cols=126 Identities=14% Similarity=0.106 Sum_probs=102.5
Q ss_pred eEEE-EeCCCCc---eeEee-eccCC-CcccCcceeeeeEEEEEecCCCee----eeCCCchhchhhhhhhhc-CCcEEE
Q psy15036 44 FGTQ-LGRRGIP---LLKHL-KYLGT-GTHGKTVGIVFPAISVTYSIGPRY----FRFPLVSRFLSLTTGLYR-GTMGFL 112 (179)
Q Consensus 44 ~Kiv-lG~~gvG---~~~~~-~~~~~-~~~~~Ti~~~~~~k~v~~~~~~~i----wDt~G~e~~~~~~~~~~~-~~~~vi 112 (179)
+||+ +|++||| ++..+ .+.+. ..+.+|.+.++..+.+.++ +..+ ||++|++. .+...+++ ++|+++
T Consensus 1 ~KI~lvG~~gvGKTsLi~~~~~~~~~~~~~~~t~~~~~~~~~i~~~-~~~~~l~i~Dt~G~~~--~~~~~~~~~~ad~ii 77 (221)
T cd04148 1 YRVVMLGSPGVGKSSLASQFTSGEYDDHAYDASGDDDTYERTVSVD-GEESTLVVIDHWEQEM--WTEDSCMQYQGDAFV 77 (221)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCcCccCcCCCccccceEEEEEEC-CEEEEEEEEeCCCcch--HHHhHHhhcCCCEEE
Confidence 5897 9999999 55555 35554 6788888767777888887 6554 99999983 35566777 999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCCCCCCCHHHHHHHHhhhC
Q psy15036 113 LIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQRCREVVTPDQIMFGSTQS 177 (179)
Q Consensus 113 lvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~~r~Vs~~e~~~~a~~~~ 177 (179)
+|||+++++||+++..|+.++.+..... ..|+|+||||+|+.+.++|+.++++++|....
T Consensus 78 lV~d~td~~S~~~~~~~~~~l~~~~~~~-----~~piilV~NK~Dl~~~~~v~~~~~~~~a~~~~ 137 (221)
T cd04148 78 VVYSVTDRSSFERASELRIQLRRNRQLE-----DRPIILVGNKSDLARSREVSVQEGRACAVVFD 137 (221)
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhcCCC-----CCCEEEEEEChhccccceecHHHHHHHHHHcC
Confidence 9999999999999999999998764321 16899999999998889999999999987653
No 92
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=99.86 E-value=7.8e-21 Score=141.89 Aligned_cols=127 Identities=17% Similarity=0.226 Sum_probs=106.5
Q ss_pred eEEE-EeCCCCc---eeEeee-ccCCCcccCcceeeeeEEEEEecCCCee----eeCCCchhchhhhhhhhcCCcEEEEE
Q psy15036 44 FGTQ-LGRRGIP---LLKHLK-YLGTGTHGKTVGIVFPAISVTYSIGPRY----FRFPLVSRFLSLTTGLYRGTMGFLLI 114 (179)
Q Consensus 44 ~Kiv-lG~~gvG---~~~~~~-~~~~~~~~~Ti~~~~~~k~v~~~~~~~i----wDt~G~e~~~~~~~~~~~~~~~vilv 114 (179)
+||+ +|++|+| ++..+. +.+...+.||++..+ .+.+.++ +..+ ||++|+++|..+++.+++.++++++|
T Consensus 2 ~ki~liG~~~~GKTsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~-~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~vlv 79 (168)
T cd04177 2 YKIVVLGAGGVGKSALTVQFVQNVFIESYDPTIEDSY-RKQVEID-GRQCDLEILDTAGTEQFTAMRELYIKSGQGFLLV 79 (168)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchheE-EEEEEEC-CEEEEEEEEeCCCcccchhhhHHHHhhCCEEEEE
Confidence 6897 9999999 555544 556778889988554 5777777 6654 99999999999999999999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCCCCCCCHHHHHHHHhhhC
Q psy15036 115 FDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQRCREVVTPDQIMFGSTQS 177 (179)
Q Consensus 115 yDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~~r~Vs~~e~~~~a~~~~ 177 (179)
||++++++|+.+..|.+.+.+..... ..|++++|||.|+.+.+.++.+++.+++++..
T Consensus 80 ~~~~~~~s~~~~~~~~~~i~~~~~~~-----~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~ 137 (168)
T cd04177 80 YSVTSEASLNELGELREQVLRIKDSD-----NVPMVLVGNKADLEDDRQVSREDGVSLSQQWG 137 (168)
T ss_pred EECCCHHHHHHHHHHHHHHHHhhCCC-----CCCEEEEEEChhccccCccCHHHHHHHHHHcC
Confidence 99999999999999999998754321 16888999999999889999999999887754
No 93
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=99.85 E-value=2e-20 Score=137.53 Aligned_cols=126 Identities=25% Similarity=0.362 Sum_probs=105.5
Q ss_pred eEEE-EeCCCCc---eeEeee-ccCCCcccCcceeeeeEEEEEecCCCee----eeCCCchhchhhhhhhhcCCcEEEEE
Q psy15036 44 FGTQ-LGRRGIP---LLKHLK-YLGTGTHGKTVGIVFPAISVTYSIGPRY----FRFPLVSRFLSLTTGLYRGTMGFLLI 114 (179)
Q Consensus 44 ~Kiv-lG~~gvG---~~~~~~-~~~~~~~~~Ti~~~~~~k~v~~~~~~~i----wDt~G~e~~~~~~~~~~~~~~~vilv 114 (179)
+||+ +|.+||| ++.++. ..+...+.+|.+.++..+.+.+. +..+ ||++|++.+..+++.++++++++++|
T Consensus 1 ~ki~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v 79 (162)
T cd04123 1 FKVVLLGEGRVGKTSLVLRYVENKFNEKHESTTQASFFQKTVNIG-GKRIDLAIWDTAGQERYHALGPIYYRDADGAILV 79 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCccceeEEEEEEEEC-CEEEEEEEEECCchHHHHHhhHHHhccCCEEEEE
Confidence 5887 9999999 555554 44556677787777766777776 6543 99999999999999999999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCCCCCCCHHHHHHHHhhh
Q psy15036 115 FDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQRCREVVTPDQIMFGSTQ 176 (179)
Q Consensus 115 yDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~~r~Vs~~e~~~~a~~~ 176 (179)
||++++++|+.+..|++++++....+ .|+++|+||+|+.+++.+..++..++++..
T Consensus 80 ~d~~~~~s~~~~~~~~~~i~~~~~~~------~piiiv~nK~D~~~~~~~~~~~~~~~~~~~ 135 (162)
T cd04123 80 YDITDADSFQKVKKWIKELKQMRGNN------ISLVIVGNKIDLERQRVVSKSEAEEYAKSV 135 (162)
T ss_pred EECCCHHHHHHHHHHHHHHHHhCCCC------CeEEEEEECcccccccCCCHHHHHHHHHHc
Confidence 99999999999999999998776544 689999999999988889998888887654
No 94
>cd04135 Tc10 TC10 subfamily. TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti
Probab=99.85 E-value=1.1e-20 Score=141.45 Aligned_cols=125 Identities=22% Similarity=0.217 Sum_probs=102.5
Q ss_pred eEEE-EeCCCCc---eeEeee-ccCCCcccCcceeeeeEEEEEecCCCee----eeCCCchhchhhhhhhhcCCcEEEEE
Q psy15036 44 FGTQ-LGRRGIP---LLKHLK-YLGTGTHGKTVGIVFPAISVTYSIGPRY----FRFPLVSRFLSLTTGLYRGTMGFLLI 114 (179)
Q Consensus 44 ~Kiv-lG~~gvG---~~~~~~-~~~~~~~~~Ti~~~~~~k~v~~~~~~~i----wDt~G~e~~~~~~~~~~~~~~~vilv 114 (179)
+||+ +|+.|+| ++..+. ..+.+.+.||++..+ ...+.++ +..+ ||++|+++|..++..++++++++++|
T Consensus 1 ~ki~i~G~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~-~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv 78 (174)
T cd04135 1 LKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHY-AVSVTVG-GKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLIC 78 (174)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeee-EEEEEEC-CEEEEEEEEeCCCcccccccccccCCCCCEEEEE
Confidence 5897 9999999 554444 567777888887444 4567777 7664 99999999999999999999999999
Q ss_pred EeCCChhhHHHHH-HHHHHHHHHhCCccCccccceEEEEeeCCCcCCC------------CCCCHHHHHHHHhhhC
Q psy15036 115 FDVTNENSFKDVE-KWLLQIKVMDGALFTHFELQIVFMRGCLELLQRC------------REVVTPDQIMFGSTQS 177 (179)
Q Consensus 115 yDit~~~Sf~~l~-~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~~------------r~Vs~~e~~~~a~~~~ 177 (179)
||+++++||+++. .|+..+++..+ + .|+++||||+|+.+. +.|+.+++..+|++.+
T Consensus 79 ~~~~~~~s~~~~~~~~~~~l~~~~~-~------~piivv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 147 (174)
T cd04135 79 FSVVNPASFQNVKEEWVPELKEYAP-N------VPYLLVGTQIDLRDDPKTLARLNDMKEKPVTVEQGQKLAKEIG 147 (174)
T ss_pred EECCCHHHHHHHHHHHHHHHHhhCC-C------CCEEEEeEchhhhcChhhHHHHhhccCCCCCHHHHHHHHHHcC
Confidence 9999999999995 79998876633 3 688899999998543 4789999999998765
No 95
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=99.85 E-value=3.4e-21 Score=143.88 Aligned_cols=121 Identities=13% Similarity=0.101 Sum_probs=94.9
Q ss_pred EE-EeCCCCc---eeEeee-ccCCCcccCcceeeeeEEEEEecCCCee--eeCCCchhchhhhhhhhcCCcEEEEEEeCC
Q psy15036 46 TQ-LGRRGIP---LLKHLK-YLGTGTHGKTVGIVFPAISVTYSIGPRY--FRFPLVSRFLSLTTGLYRGTMGFLLIFDVT 118 (179)
Q Consensus 46 iv-lG~~gvG---~~~~~~-~~~~~~~~~Ti~~~~~~k~v~~~~~~~i--wDt~G~e~~~~~~~~~~~~~~~vilvyDit 118 (179)
|+ +|+.||| ++.++. ..+...+.||+|.++ ..+... +..+ ||++|+++|+.++..+++++|++|+|||.+
T Consensus 2 i~ivG~~~vGKTsli~~~~~~~~~~~~~pt~g~~~--~~i~~~-~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~V~D~t 78 (164)
T cd04162 2 ILVLGLDGAGKTSLLHSLSSERSLESVVPTTGFNS--VAIPTQ-DAIMELLEIGGSQNLRKYWKRYLSGSQGLIFVVDSA 78 (164)
T ss_pred EEEECCCCCCHHHHHHHHhcCCCcccccccCCcce--EEEeeC-CeEEEEEECCCCcchhHHHHHHHhhCCEEEEEEECC
Confidence 55 9999999 565555 557788899998654 233333 4444 999999999999999999999999999999
Q ss_pred ChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCCCCCCCH----HHHHHHHhhh
Q psy15036 119 NENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQRCREVVT----PDQIMFGSTQ 176 (179)
Q Consensus 119 ~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~~r~Vs~----~e~~~~a~~~ 176 (179)
++++|.+++.|+.++.+.... .|+++||||+|+...+.++. .++..+|++.
T Consensus 79 ~~~s~~~~~~~l~~~~~~~~~-------~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~ 133 (164)
T cd04162 79 DSERLPLARQELHQLLQHPPD-------LPLVVLANKQDLPAARSVQEIHKELELEPIARGR 133 (164)
T ss_pred CHHHHHHHHHHHHHHHhCCCC-------CcEEEEEeCcCCcCCCCHHHHHHHhCChhhcCCC
Confidence 999999999999988654432 68899999999988776553 3455565543
No 96
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=99.84 E-value=1.9e-20 Score=140.44 Aligned_cols=119 Identities=18% Similarity=0.176 Sum_probs=94.3
Q ss_pred eeEEE-EeCCCCc---eeEeee-ccCCCcccCcceeeeeEEEEEecCCCee--eeCCCchhchhhhhhhhcCCcEEEEEE
Q psy15036 43 NFGTQ-LGRRGIP---LLKHLK-YLGTGTHGKTVGIVFPAISVTYSIGPRY--FRFPLVSRFLSLTTGLYRGTMGFLLIF 115 (179)
Q Consensus 43 ~~Kiv-lG~~gvG---~~~~~~-~~~~~~~~~Ti~~~~~~k~v~~~~~~~i--wDt~G~e~~~~~~~~~~~~~~~vilvy 115 (179)
.+||+ +|+++|| +++++. ..+ ..+.||+|.++. .+... +..+ ||++|+++|+.+++.+|+++|++|+||
T Consensus 9 ~~kv~i~G~~~~GKTsli~~l~~~~~-~~~~~t~g~~~~--~~~~~-~~~~~l~Dt~G~~~~~~~~~~~~~~a~~ii~v~ 84 (168)
T cd04149 9 EMRILMLGLDAAGKTTILYKLKLGQS-VTTIPTVGFNVE--TVTYK-NVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVV 84 (168)
T ss_pred ccEEEEECcCCCCHHHHHHHHccCCC-ccccCCcccceE--EEEEC-CEEEEEEECCCCHHHHHHHHHHhccCCEEEEEE
Confidence 58998 9999999 656655 334 457889987664 34445 5555 999999999999999999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHHHh-CCccCccccceEEEEeeCCCcCCCCCCCHHHHHHHH
Q psy15036 116 DVTNENSFKDVEKWLLQIKVMD-GALFTHFELQIVFMRGCLELLQRCREVVTPDQIMFG 173 (179)
Q Consensus 116 Dit~~~Sf~~l~~w~~~i~~~~-~~~~~~~~~~~iilvGnK~Dl~~~r~Vs~~e~~~~a 173 (179)
|++++.||+++..|+.++.+.. ..+ +|++|||||+|+.+ .++.+|+.++.
T Consensus 85 D~t~~~s~~~~~~~~~~~~~~~~~~~------~piilv~NK~Dl~~--~~~~~~i~~~~ 135 (168)
T cd04149 85 DSADRDRIDEARQELHRIINDREMRD------ALLLVFANKQDLPD--AMKPHEIQEKL 135 (168)
T ss_pred eCCchhhHHHHHHHHHHHhcCHhhcC------CcEEEEEECcCCcc--CCCHHHHHHHc
Confidence 9999999999988887776432 222 68999999999965 46778877764
No 97
>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=99.84 E-value=4.1e-20 Score=138.36 Aligned_cols=125 Identities=14% Similarity=0.113 Sum_probs=102.1
Q ss_pred eEEE-EeCCCCc---eeEeee-ccCCCcccCcceeeeeEEEEEecCCCee----eeCCCchhchhhhhhhhcCCcEEEEE
Q psy15036 44 FGTQ-LGRRGIP---LLKHLK-YLGTGTHGKTVGIVFPAISVTYSIGPRY----FRFPLVSRFLSLTTGLYRGTMGFLLI 114 (179)
Q Consensus 44 ~Kiv-lG~~gvG---~~~~~~-~~~~~~~~~Ti~~~~~~k~v~~~~~~~i----wDt~G~e~~~~~~~~~~~~~~~vilv 114 (179)
.||+ +|+.||| ++.++. ..+.+.+.||++..+. +.+.++ +..+ |||+|+++|..++..++++++++++|
T Consensus 2 ~ki~iiG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~-~~~~~~-~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v 79 (175)
T cd01870 2 KKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYV-ADIEVD-GKQVELALWDTAGQEDYDRLRPLSYPDTDVILMC 79 (175)
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccccceE-EEEEEC-CEEEEEEEEeCCCchhhhhccccccCCCCEEEEE
Confidence 5897 9999999 555554 6677888999986664 456777 6654 99999999999998999999999999
Q ss_pred EeCCChhhHHHHH-HHHHHHHHHhCCccCccccceEEEEeeCCCcCC------------CCCCCHHHHHHHHhhhC
Q psy15036 115 FDVTNENSFKDVE-KWLLQIKVMDGALFTHFELQIVFMRGCLELLQR------------CREVVTPDQIMFGSTQS 177 (179)
Q Consensus 115 yDit~~~Sf~~l~-~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~------------~r~Vs~~e~~~~a~~~~ 177 (179)
||+++++||+++. .|+..+++.... .|+++||||+|+.+ ++.++.+++++++++..
T Consensus 80 ~~~~~~~s~~~~~~~~~~~~~~~~~~-------~piilv~nK~Dl~~~~~~~~~i~~~~~~~v~~~~~~~~~~~~~ 148 (175)
T cd01870 80 FSIDSPDSLENIPEKWTPEVKHFCPN-------VPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANKIG 148 (175)
T ss_pred EECCCHHHHHHHHHHHHHHHHhhCCC-------CCEEEEeeChhcccChhhhhhhhhccCCCccHHHHHHHHHHcC
Confidence 9999999999995 799988765443 58899999999854 24577889999987653
No 98
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=99.84 E-value=6.6e-20 Score=136.50 Aligned_cols=131 Identities=23% Similarity=0.270 Sum_probs=107.1
Q ss_pred eEEE-EeCCCCc---eeEeee-ccCCCcccCcceeeeeEEEEEecCCCee----eeCCCchhchhhhhhhhcCCcEEEEE
Q psy15036 44 FGTQ-LGRRGIP---LLKHLK-YLGTGTHGKTVGIVFPAISVTYSIGPRY----FRFPLVSRFLSLTTGLYRGTMGFLLI 114 (179)
Q Consensus 44 ~Kiv-lG~~gvG---~~~~~~-~~~~~~~~~Ti~~~~~~k~v~~~~~~~i----wDt~G~e~~~~~~~~~~~~~~~vilv 114 (179)
+||+ +|+++|| +++++. ..+...+.+|++.++..+.+.+. +..+ ||++|++.|..++..++++++++|+|
T Consensus 1 ~ki~viG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~-~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v 79 (172)
T cd01862 1 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVTVD-DKLVTLQIWDTAGQERFQSLGVAFYRGADCCVLV 79 (172)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcCcCCccceEEEEEEEEEC-CEEEEEEEEeCCChHHHHhHHHHHhcCCCEEEEE
Confidence 5887 9999999 555544 55667778899988877778887 7655 99999999999999999999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCCCCCCCHHHHHHHHhhhC
Q psy15036 115 FDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQRCREVVTPDQIMFGSTQS 177 (179)
Q Consensus 115 yDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~~r~Vs~~e~~~~a~~~~ 177 (179)
||++++++|+++..|.+.+........ ....|+++||||+|+..++.++.++.+.++++.+
T Consensus 80 ~d~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~ 140 (172)
T cd01862 80 YDVTNPKSFESLDSWRDEFLIQASPSD--PENFPFVVLGNKIDLEEKRQVSTKKAQQWCQSNG 140 (172)
T ss_pred EECCCHHHHHHHHHHHHHHHHhcCccC--CCCceEEEEEECcccccccccCHHHHHHHHHHcC
Confidence 999999999999999998876654210 0116889999999998777888899888887653
No 99
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=99.83 E-value=7.8e-20 Score=135.00 Aligned_cols=127 Identities=24% Similarity=0.417 Sum_probs=105.5
Q ss_pred eEEE-EeCCCCc---eeEeee-ccCCCcccCcceeeeeEEEEEecCCCee----eeCCCchhchhhhhhhhcCCcEEEEE
Q psy15036 44 FGTQ-LGRRGIP---LLKHLK-YLGTGTHGKTVGIVFPAISVTYSIGPRY----FRFPLVSRFLSLTTGLYRGTMGFLLI 114 (179)
Q Consensus 44 ~Kiv-lG~~gvG---~~~~~~-~~~~~~~~~Ti~~~~~~k~v~~~~~~~i----wDt~G~e~~~~~~~~~~~~~~~vilv 114 (179)
+||+ +|++++| ++..+. ..+...+.||++.++....+.++ +..+ ||++|++++..+...+++++|++++|
T Consensus 1 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v 79 (161)
T cd01863 1 LKILLIGDSGVGKSSLLLRFTDDTFDPDLAATIGVDFKVKTLTVD-GKKVKLAIWDTAGQERFRTLTSSYYRGAQGVILV 79 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCcccCCcccceEEEEEEEEC-CEEEEEEEEECCCchhhhhhhHHHhCCCCEEEEE
Confidence 5887 9999999 555554 44556688999988877777777 6554 99999999999999999999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCCCCCCCHHHHHHHHhhhC
Q psy15036 115 FDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQRCREVVTPDQIMFGSTQS 177 (179)
Q Consensus 115 yDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~~r~Vs~~e~~~~a~~~~ 177 (179)
||+++++||+.+..|+..+.+..... .+|+++||||+|+. .+.+..+++.+++++..
T Consensus 80 ~d~~~~~s~~~~~~~~~~i~~~~~~~-----~~~~~iv~nK~D~~-~~~~~~~~~~~~~~~~~ 136 (161)
T cd01863 80 YDVTRRDTFTNLETWLNELETYSTNN-----DIVKMLVGNKIDKE-NREVTREEGLKFARKHN 136 (161)
T ss_pred EECCCHHHHHhHHHHHHHHHHhCCCC-----CCcEEEEEECCccc-ccccCHHHHHHHHHHcC
Confidence 99999999999999999998876432 16889999999997 46788889999887653
No 100
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=99.83 E-value=7.3e-20 Score=135.92 Aligned_cols=107 Identities=15% Similarity=0.176 Sum_probs=85.8
Q ss_pred eEEE-EeCCCCc---eeEeee-ccCCCcccCcceeeeeEEEEEecCCCee--eeCCCchhchhhhhhhhcCCcEEEEEEe
Q psy15036 44 FGTQ-LGRRGIP---LLKHLK-YLGTGTHGKTVGIVFPAISVTYSIGPRY--FRFPLVSRFLSLTTGLYRGTMGFLLIFD 116 (179)
Q Consensus 44 ~Kiv-lG~~gvG---~~~~~~-~~~~~~~~~Ti~~~~~~k~v~~~~~~~i--wDt~G~e~~~~~~~~~~~~~~~vilvyD 116 (179)
+||+ +|+++|| +++++. +.+. .+.||+|.++. .+... +..+ ||++|+++|..++..||++++++|+|||
T Consensus 1 ~kv~~~G~~~~GKTsli~~l~~~~~~-~~~pt~g~~~~--~~~~~-~~~~~l~D~~G~~~~~~~~~~~~~~ad~~i~v~D 76 (159)
T cd04150 1 MRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVE--TVEYK-NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVD 76 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCc-ccCCCCCcceE--EEEEC-CEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEEe
Confidence 4887 9999999 565654 5554 57899987653 44555 5555 9999999999999999999999999999
Q ss_pred CCChhhHHHHHHHHHHHHHHh-CCccCccccceEEEEeeCCCcCC
Q psy15036 117 VTNENSFKDVEKWLLQIKVMD-GALFTHFELQIVFMRGCLELLQR 160 (179)
Q Consensus 117 it~~~Sf~~l~~w~~~i~~~~-~~~~~~~~~~~iilvGnK~Dl~~ 160 (179)
+++++||+++..|+..+.+.. ... +|++|+|||+|+.+
T Consensus 77 ~~~~~s~~~~~~~~~~~~~~~~~~~------~piilv~NK~Dl~~ 115 (159)
T cd04150 77 SNDRERIGEAREELQRMLNEDELRD------AVLLVFANKQDLPN 115 (159)
T ss_pred CCCHHHHHHHHHHHHHHHhcHHhcC------CCEEEEEECCCCCC
Confidence 999999999988887775432 122 68899999999965
No 101
>PLN00223 ADP-ribosylation factor; Provisional
Probab=99.82 E-value=8.5e-20 Score=138.58 Aligned_cols=117 Identities=14% Similarity=0.153 Sum_probs=90.9
Q ss_pred eeEEE-EeCCCCc---eeEeee-ccCCCcccCcceeeeeEEEEEecCCCee--eeCCCchhchhhhhhhhcCCcEEEEEE
Q psy15036 43 NFGTQ-LGRRGIP---LLKHLK-YLGTGTHGKTVGIVFPAISVTYSIGPRY--FRFPLVSRFLSLTTGLYRGTMGFLLIF 115 (179)
Q Consensus 43 ~~Kiv-lG~~gvG---~~~~~~-~~~~~~~~~Ti~~~~~~k~v~~~~~~~i--wDt~G~e~~~~~~~~~~~~~~~vilvy 115 (179)
.+||+ +|+++|| +++++. +.+. .+.||+|.++. .+... +..+ ||++|+++++.++..||+++|++|+||
T Consensus 17 ~~ki~ivG~~~~GKTsl~~~l~~~~~~-~~~pt~g~~~~--~~~~~-~~~~~i~D~~Gq~~~~~~~~~~~~~a~~iI~V~ 92 (181)
T PLN00223 17 EMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVE--TVEYK-NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV 92 (181)
T ss_pred ccEEEEECCCCCCHHHHHHHHccCCCc-cccCCcceeEE--EEEEC-CEEEEEEECCCCHHHHHHHHHHhccCCEEEEEE
Confidence 57998 9999999 555554 4444 57899987653 45555 5555 999999999999999999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHHHh-CCccCccccceEEEEeeCCCcCCCCCCCHHHHHH
Q psy15036 116 DVTNENSFKDVEKWLLQIKVMD-GALFTHFELQIVFMRGCLELLQRCREVVTPDQIM 171 (179)
Q Consensus 116 Dit~~~Sf~~l~~w~~~i~~~~-~~~~~~~~~~~iilvGnK~Dl~~~r~Vs~~e~~~ 171 (179)
|++++++|+++..|+..+.... ..+ +|++|||||.|+.+ .++.++..+
T Consensus 93 D~s~~~s~~~~~~~l~~~l~~~~~~~------~piilv~NK~Dl~~--~~~~~~~~~ 141 (181)
T PLN00223 93 DSNDRDRVVEARDELHRMLNEDELRD------AVLLVFANKQDLPN--AMNAAEITD 141 (181)
T ss_pred eCCcHHHHHHHHHHHHHHhcCHhhCC------CCEEEEEECCCCCC--CCCHHHHHH
Confidence 9999999999988887765322 122 68999999999975 344444433
No 102
>cd04129 Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).
Probab=99.82 E-value=1.1e-19 Score=138.42 Aligned_cols=125 Identities=16% Similarity=0.100 Sum_probs=103.3
Q ss_pred eEEE-EeCCCCc---eeEeee-ccCCCcccCcceeeeeEEEEEecCCCee----eeCCCchhchhhhhhhhcCCcEEEEE
Q psy15036 44 FGTQ-LGRRGIP---LLKHLK-YLGTGTHGKTVGIVFPAISVTYSIGPRY----FRFPLVSRFLSLTTGLYRGTMGFLLI 114 (179)
Q Consensus 44 ~Kiv-lG~~gvG---~~~~~~-~~~~~~~~~Ti~~~~~~k~v~~~~~~~i----wDt~G~e~~~~~~~~~~~~~~~vilv 114 (179)
.||+ +|+.|+| +++.+. +.+.+.+.+|+...+. ..+.++ +..+ ||++|+++|....+.++++++++++|
T Consensus 2 ~Ki~ivG~~g~GKStLl~~l~~~~~~~~~~~t~~~~~~-~~~~~~-~~~~~l~i~Dt~g~~~~~~~~~~~~~~a~~~llv 79 (187)
T cd04129 2 RKLVIVGDGACGKTSLLSVFTLGEFPEEYHPTVFENYV-TDCRVD-GKPVQLALWDTAGQEEYERLRPLSYSKAHVILIG 79 (187)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceEE-EEEEEC-CEEEEEEEEECCCChhccccchhhcCCCCEEEEE
Confidence 5887 9999999 555654 6677778888876554 456667 6554 99999999988888899999999999
Q ss_pred EeCCChhhHHHHH-HHHHHHHHHhCCccCccccceEEEEeeCCCcCC----------CCCCCHHHHHHHHhhhC
Q psy15036 115 FDVTNENSFKDVE-KWLLQIKVMDGALFTHFELQIVFMRGCLELLQR----------CREVVTPDQIMFGSTQS 177 (179)
Q Consensus 115 yDit~~~Sf~~l~-~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~----------~r~Vs~~e~~~~a~~~~ 177 (179)
||+++++||+++. .|++.+++..+. .|++|||||+|+.+ .|.++.+++..+|++.+
T Consensus 80 ~~i~~~~s~~~~~~~~~~~i~~~~~~-------~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (187)
T cd04129 80 FAVDTPDSLENVRTKWIEEVRRYCPN-------VPVILVGLKKDLRQDAVAKEEYRTQRFVPIQQGKRVAKEIG 146 (187)
T ss_pred EECCCHHHHHHHHHHHHHHHHHhCCC-------CCEEEEeeChhhhhCcccccccccCCcCCHHHHHHHHHHhC
Confidence 9999999999996 799999876543 68999999999954 57788899999998875
No 103
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=99.82 E-value=1.9e-19 Score=139.89 Aligned_cols=126 Identities=19% Similarity=0.234 Sum_probs=103.4
Q ss_pred CceeeEEE-EeCCCCc---ee-EeeeccCCCcccCcceeeeeEEEEEecCCCee----eeCCCchhchhhhhhhhcCCcE
Q psy15036 40 FSFNFGTQ-LGRRGIP---LL-KHLKYLGTGTHGKTVGIVFPAISVTYSIGPRY----FRFPLVSRFLSLTTGLYRGTMG 110 (179)
Q Consensus 40 ~~~~~Kiv-lG~~gvG---~~-~~~~~~~~~~~~~Ti~~~~~~k~v~~~~~~~i----wDt~G~e~~~~~~~~~~~~~~~ 110 (179)
....+||+ +|++||| ++ +.+.+.+...|.||++.++....+..+ +..+ ||++|+++|..++..|++.+++
T Consensus 6 ~~~~~kv~liG~~g~GKTtLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~-~~~i~i~~~Dt~g~~~~~~~~~~~~~~~~~ 84 (215)
T PTZ00132 6 EVPEFKLILVGDGGVGKTTFVKRHLTGEFEKKYIPTLGVEVHPLKFYTN-CGPICFNVWDTAGQEKFGGLRDGYYIKGQC 84 (215)
T ss_pred CCCCceEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEEC-CeEEEEEEEECCCchhhhhhhHHHhccCCE
Confidence 34578997 9999999 66 455577888999999999887777766 6665 9999999999999999999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCCCCCCCHHHHHHHHhh
Q psy15036 111 FLLIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQRCREVVTPDQIMFGST 175 (179)
Q Consensus 111 vilvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~~r~Vs~~e~~~~a~~ 175 (179)
+++|||+++++||..+..|+..+.+.... .|+++||||+|+.+ +.++.++ .++++.
T Consensus 85 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~-------~~i~lv~nK~Dl~~-~~~~~~~-~~~~~~ 140 (215)
T PTZ00132 85 AIIMFDVTSRITYKNVPNWHRDIVRVCEN-------IPIVLVGNKVDVKD-RQVKARQ-ITFHRK 140 (215)
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHhCCC-------CCEEEEEECccCcc-ccCCHHH-HHHHHH
Confidence 99999999999999999999999876533 67888999999964 4555443 345543
No 104
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=99.82 E-value=8e-20 Score=136.81 Aligned_cols=119 Identities=13% Similarity=0.144 Sum_probs=95.4
Q ss_pred EEE-EeCCCCc---eeEeeeccCCCcccCcceeeeeEEEEEecCCCee--eeCCCchhchhhhhhhhcCCcEEEEEEeCC
Q psy15036 45 GTQ-LGRRGIP---LLKHLKYLGTGTHGKTVGIVFPAISVTYSIGPRY--FRFPLVSRFLSLTTGLYRGTMGFLLIFDVT 118 (179)
Q Consensus 45 Kiv-lG~~gvG---~~~~~~~~~~~~~~~Ti~~~~~~k~v~~~~~~~i--wDt~G~e~~~~~~~~~~~~~~~vilvyDit 118 (179)
||+ +|+++|| ++.++.......+.||++.++. .+..+ +..+ ||++|++++..++..++++++++++|||++
T Consensus 1 ~vvlvG~~~~GKTsl~~~l~~~~~~~~~~T~~~~~~--~~~~~-~~~i~l~Dt~G~~~~~~~~~~~~~~ad~ii~V~D~s 77 (169)
T cd04158 1 RVVTLGLDGAGKTTILFKLKQDEFMQPIPTIGFNVE--TVEYK-NLKFTIWDVGGKHKLRPLWKHYYLNTQAVVFVVDSS 77 (169)
T ss_pred CEEEECCCCCCHHHHHHHHhcCCCCCcCCcCceeEE--EEEEC-CEEEEEEECCCChhcchHHHHHhccCCEEEEEEeCC
Confidence 576 9999999 5555553333358899987664 45555 5555 999999999999999999999999999999
Q ss_pred ChhhHHHHHHHHHHHHHHhC-CccCccccceEEEEeeCCCcCCCCCCCHHHHHHHHh
Q psy15036 119 NENSFKDVEKWLLQIKVMDG-ALFTHFELQIVFMRGCLELLQRCREVVTPDQIMFGS 174 (179)
Q Consensus 119 ~~~Sf~~l~~w~~~i~~~~~-~~~~~~~~~~iilvGnK~Dl~~~r~Vs~~e~~~~a~ 174 (179)
++++|+++..|+..+.+... .+ +|++|||||+|+.+ .++.++++++++
T Consensus 78 ~~~s~~~~~~~~~~~~~~~~~~~------~piilv~NK~Dl~~--~~~~~~~~~~~~ 126 (169)
T cd04158 78 HRDRVSEAHSELAKLLTEKELRD------ALLLIFANKQDVAG--ALSVEEMTELLS 126 (169)
T ss_pred cHHHHHHHHHHHHHHhcChhhCC------CCEEEEEeCcCccc--CCCHHHHHHHhC
Confidence 99999999999999875432 22 68899999999964 588888887764
No 105
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=99.82 E-value=1.1e-19 Score=137.00 Aligned_cols=108 Identities=17% Similarity=0.203 Sum_probs=87.5
Q ss_pred eeEEE-EeCCCCc---eeEeee-ccCCCcccCcceeeeeEEEEEecCCCee--eeCCCchhchhhhhhhhcCCcEEEEEE
Q psy15036 43 NFGTQ-LGRRGIP---LLKHLK-YLGTGTHGKTVGIVFPAISVTYSIGPRY--FRFPLVSRFLSLTTGLYRGTMGFLLIF 115 (179)
Q Consensus 43 ~~Kiv-lG~~gvG---~~~~~~-~~~~~~~~~Ti~~~~~~k~v~~~~~~~i--wDt~G~e~~~~~~~~~~~~~~~vilvy 115 (179)
.+||+ +|++||| ++.++. +.+ ..+.||++.++. .+... +..+ ||++|+++++.++..||++++++|+||
T Consensus 13 ~~ki~l~G~~~~GKTsL~~~~~~~~~-~~~~~t~~~~~~--~~~~~-~~~l~l~D~~G~~~~~~~~~~~~~~ad~ii~v~ 88 (175)
T smart00177 13 EMRILMVGLDAAGKTTILYKLKLGES-VTTIPTIGFNVE--TVTYK-NISFTVWDVGGQDKIRPLWRHYYTNTQGLIFVV 88 (175)
T ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCC-CCcCCccccceE--EEEEC-CEEEEEEECCCChhhHHHHHHHhCCCCEEEEEE
Confidence 58998 9999999 555554 444 357899987764 34455 5555 999999999999999999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHHHh-CCccCccccceEEEEeeCCCcCC
Q psy15036 116 DVTNENSFKDVEKWLLQIKVMD-GALFTHFELQIVFMRGCLELLQR 160 (179)
Q Consensus 116 Dit~~~Sf~~l~~w~~~i~~~~-~~~~~~~~~~~iilvGnK~Dl~~ 160 (179)
|+++++||+++..|+..+.+.. ..+ +|++|||||+||.+
T Consensus 89 D~t~~~s~~~~~~~l~~~~~~~~~~~------~piilv~NK~Dl~~ 128 (175)
T smart00177 89 DSNDRDRIDEAREELHRMLNEDELRD------AVILVFANKQDLPD 128 (175)
T ss_pred ECCCHHHHHHHHHHHHHHhhCHhhcC------CcEEEEEeCcCccc
Confidence 9999999999999888876432 222 68999999999975
No 106
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=99.82 E-value=2.5e-20 Score=139.45 Aligned_cols=109 Identities=12% Similarity=0.143 Sum_probs=91.6
Q ss_pred EEE-EeCCCCc---eeEeeeccCCCcccCcceeeeeEEEEEecCCCee--eeCCCchhchhhhhhhhcCCcEEEEEEeCC
Q psy15036 45 GTQ-LGRRGIP---LLKHLKYLGTGTHGKTVGIVFPAISVTYSIGPRY--FRFPLVSRFLSLTTGLYRGTMGFLLIFDVT 118 (179)
Q Consensus 45 Kiv-lG~~gvG---~~~~~~~~~~~~~~~Ti~~~~~~k~v~~~~~~~i--wDt~G~e~~~~~~~~~~~~~~~vilvyDit 118 (179)
+|+ +|++||| +++++...+...+.||+|.. .+.+..+ +..+ ||++|+++++.++..||++++++|+|||.+
T Consensus 1 ~i~~~G~~~~GKTsl~~~l~~~~~~~~~~t~g~~--~~~~~~~-~~~~~i~D~~G~~~~~~~~~~~~~~a~~ii~V~D~s 77 (167)
T cd04161 1 TLLTVGLDNAGKTTLVSALQGEIPKKVAPTVGFT--PTKLRLD-KYEVCIFDLGGGANFRGIWVNYYAEAHGLVFVVDSS 77 (167)
T ss_pred CEEEECCCCCCHHHHHHHHhCCCCccccCcccce--EEEEEEC-CEEEEEEECCCcHHHHHHHHHHHcCCCEEEEEEECC
Confidence 366 9999999 77777766788899999865 3456666 6555 999999999999999999999999999999
Q ss_pred ChhhHHHHHHHHHHHHHHhC-CccCccccceEEEEeeCCCcCCCC
Q psy15036 119 NENSFKDVEKWLLQIKVMDG-ALFTHFELQIVFMRGCLELLQRCR 162 (179)
Q Consensus 119 ~~~Sf~~l~~w~~~i~~~~~-~~~~~~~~~~iilvGnK~Dl~~~r 162 (179)
++++|+++..|+..+.+... .+ .|++||+||+|+.+.+
T Consensus 78 ~~~s~~~~~~~l~~l~~~~~~~~------~piliv~NK~Dl~~~~ 116 (167)
T cd04161 78 DDDRVQEVKEILRELLQHPRVSG------KPILVLANKQDKKNAL 116 (167)
T ss_pred chhHHHHHHHHHHHHHcCccccC------CcEEEEEeCCCCcCCC
Confidence 99999999999999876532 22 6899999999998755
No 107
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=99.80 E-value=7.3e-19 Score=128.03 Aligned_cols=126 Identities=26% Similarity=0.427 Sum_probs=106.8
Q ss_pred eEEE-EeCCCCc---eeEeee-ccCCCcccCcceeeeeEEEEEecCCCee----eeCCCchhchhhhhhhhcCCcEEEEE
Q psy15036 44 FGTQ-LGRRGIP---LLKHLK-YLGTGTHGKTVGIVFPAISVTYSIGPRY----FRFPLVSRFLSLTTGLYRGTMGFLLI 114 (179)
Q Consensus 44 ~Kiv-lG~~gvG---~~~~~~-~~~~~~~~~Ti~~~~~~k~v~~~~~~~i----wDt~G~e~~~~~~~~~~~~~~~vilv 114 (179)
+||+ +|.+++| ++..+. ..+...+.+|.+.++....+.++ +..+ ||++|++.+..+...++++++++++|
T Consensus 1 ~~i~~~G~~~~GKStl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~-~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~ii~v 79 (159)
T cd00154 1 FKIVLIGDSGVGKTSLLLRFVDGKFDENYKSTIGVDFKSKTIEID-GKTVKLQIWDTAGQERFRSITPSYYRGAHGAILV 79 (159)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCCccCCceeeeeEEEEEEEC-CEEEEEEEEecCChHHHHHHHHHHhcCCCEEEEE
Confidence 4787 9999999 565555 44566678899988887777776 5443 99999999999999999999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCCCCCCCHHHHHHHHhhh
Q psy15036 115 FDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQRCREVVTPDQIMFGSTQ 176 (179)
Q Consensus 115 yDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~~r~Vs~~e~~~~a~~~ 176 (179)
||.+++++++.+..|+..+....... .|+++|+||+|+...+.+..++.++++.++
T Consensus 80 ~d~~~~~~~~~~~~~~~~~~~~~~~~------~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~ 135 (159)
T cd00154 80 YDITNRESFENLDKWLKELKEYAPEN------IPIILVGNKIDLEDQRQVSTEEAQQFAKEN 135 (159)
T ss_pred EECCCHHHHHHHHHHHHHHHHhCCCC------CcEEEEEEcccccccccccHHHHHHHHHHc
Confidence 99999999999999999998877443 688999999999766788899999998764
No 108
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=99.80 E-value=6.9e-19 Score=132.04 Aligned_cols=121 Identities=13% Similarity=0.106 Sum_probs=95.4
Q ss_pred eeeEEE-EeCCCCc---eeEeeeccCCCcccCcceeeeeEEEEEecCCCee--eeCCCchhchhhhhhhhcCCcEEEEEE
Q psy15036 42 FNFGTQ-LGRRGIP---LLKHLKYLGTGTHGKTVGIVFPAISVTYSIGPRY--FRFPLVSRFLSLTTGLYRGTMGFLLIF 115 (179)
Q Consensus 42 ~~~Kiv-lG~~gvG---~~~~~~~~~~~~~~~Ti~~~~~~k~v~~~~~~~i--wDt~G~e~~~~~~~~~~~~~~~vilvy 115 (179)
..+||+ +|++||| ++..+...+...+.||+|.. .+.+.++ +..+ ||++|+++++.++..++++++++++||
T Consensus 13 ~~~kv~ivG~~~~GKTsL~~~l~~~~~~~~~~t~g~~--~~~~~~~-~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~ 89 (173)
T cd04154 13 REMRILILGLDNAGKTTILKKLLGEDIDTISPTLGFQ--IKTLEYE-GYKLNIWDVGGQKTLRPYWRNYFESTDALIWVV 89 (173)
T ss_pred CccEEEEECCCCCCHHHHHHHHccCCCCCcCCccccc--eEEEEEC-CEEEEEEECCCCHHHHHHHHHHhCCCCEEEEEE
Confidence 358897 9999999 66666655556778898843 3556666 6655 999999999999999999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHHHh-CCccCccccceEEEEeeCCCcCCCCCCCHHHHHHHH
Q psy15036 116 DVTNENSFKDVEKWLLQIKVMD-GALFTHFELQIVFMRGCLELLQRCREVVTPDQIMFG 173 (179)
Q Consensus 116 Dit~~~Sf~~l~~w~~~i~~~~-~~~~~~~~~~~iilvGnK~Dl~~~r~Vs~~e~~~~a 173 (179)
|.++++||+++..|+..+.+.. ..+ +|+++||||+|+.+. ...+++.++.
T Consensus 90 d~~~~~s~~~~~~~~~~~~~~~~~~~------~p~iiv~nK~Dl~~~--~~~~~~~~~~ 140 (173)
T cd04154 90 DSSDRLRLDDCKRELKELLQEERLAG------ATLLILANKQDLPGA--LSEEEIREAL 140 (173)
T ss_pred ECCCHHHHHHHHHHHHHHHhChhhcC------CCEEEEEECcccccC--CCHHHHHHHh
Confidence 9999999999999988876432 122 688999999999763 3566666654
No 109
>PTZ00133 ADP-ribosylation factor; Provisional
Probab=99.80 E-value=5.7e-19 Score=134.12 Aligned_cols=114 Identities=17% Similarity=0.207 Sum_probs=88.6
Q ss_pred eeEEE-EeCCCCc---eeEeee-ccCCCcccCcceeeeeEEEEEecCCCee--eeCCCchhchhhhhhhhcCCcEEEEEE
Q psy15036 43 NFGTQ-LGRRGIP---LLKHLK-YLGTGTHGKTVGIVFPAISVTYSIGPRY--FRFPLVSRFLSLTTGLYRGTMGFLLIF 115 (179)
Q Consensus 43 ~~Kiv-lG~~gvG---~~~~~~-~~~~~~~~~Ti~~~~~~k~v~~~~~~~i--wDt~G~e~~~~~~~~~~~~~~~vilvy 115 (179)
.+||+ +|+++|| ++.++. +.+. .+.||++.++. .+... +..+ ||++|+++++.++..||+++|++|+||
T Consensus 17 ~~kv~lvG~~~vGKTsli~~~~~~~~~-~~~~T~~~~~~--~~~~~-~~~~~l~D~~G~~~~~~~~~~~~~~ad~iI~v~ 92 (182)
T PTZ00133 17 EVRILMVGLDAAGKTTILYKLKLGEVV-TTIPTIGFNVE--TVEYK-NLKFTMWDVGGQDKLRPLWRHYYQNTNGLIFVV 92 (182)
T ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCcc-ccCCccccceE--EEEEC-CEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEE
Confidence 58998 9999999 555553 4454 47789987654 45555 5555 999999999999999999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHHHh-CCccCccccceEEEEeeCCCcCCCCCCCHHH
Q psy15036 116 DVTNENSFKDVEKWLLQIKVMD-GALFTHFELQIVFMRGCLELLQRCREVVTPD 168 (179)
Q Consensus 116 Dit~~~Sf~~l~~w~~~i~~~~-~~~~~~~~~~~iilvGnK~Dl~~~r~Vs~~e 168 (179)
|+++++||+++..|+..+.+.. ..+ +|++|||||.|+.+ .++.++
T Consensus 93 D~t~~~s~~~~~~~l~~~~~~~~~~~------~piilv~NK~Dl~~--~~~~~~ 138 (182)
T PTZ00133 93 DSNDRERIGDAREELERMLSEDELRD------AVLLVFANKQDLPN--AMSTTE 138 (182)
T ss_pred eCCCHHHHHHHHHHHHHHHhCHhhcC------CCEEEEEeCCCCCC--CCCHHH
Confidence 9999999999988877765321 122 68899999999965 344444
No 110
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=99.80 E-value=1e-18 Score=128.84 Aligned_cols=126 Identities=17% Similarity=0.189 Sum_probs=104.1
Q ss_pred eEEE-EeCCCCc---eeEeee-ccCCCcccCcceeeeeEEEEEecCCCee----eeCCCchhchhhhhhhhcCCcEEEEE
Q psy15036 44 FGTQ-LGRRGIP---LLKHLK-YLGTGTHGKTVGIVFPAISVTYSIGPRY----FRFPLVSRFLSLTTGLYRGTMGFLLI 114 (179)
Q Consensus 44 ~Kiv-lG~~gvG---~~~~~~-~~~~~~~~~Ti~~~~~~k~v~~~~~~~i----wDt~G~e~~~~~~~~~~~~~~~vilv 114 (179)
+||+ +|++||| ++..+. ..+...+.+|++..+ .+...++ +..+ ||++|++++..++..++++++++++|
T Consensus 1 ~ki~~~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v 78 (164)
T cd04139 1 YKVIVVGAGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLD-GEDVQLNILDTAGQEDYAAIRDNYHRSGEGFLLV 78 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCccccCCcchhhE-EEEEEEC-CEEEEEEEEECCChhhhhHHHHHHhhcCCEEEEE
Confidence 5897 9999999 555554 556778888887555 3556666 6554 99999999999999999999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHHHhC-CccCccccceEEEEeeCCCcCCCCCCCHHHHHHHHhhhC
Q psy15036 115 FDVTNENSFKDVEKWLLQIKVMDG-ALFTHFELQIVFMRGCLELLQRCREVVTPDQIMFGSTQS 177 (179)
Q Consensus 115 yDit~~~Sf~~l~~w~~~i~~~~~-~~~~~~~~~~iilvGnK~Dl~~~r~Vs~~e~~~~a~~~~ 177 (179)
||+++++||+++..|+..+.+... .+ .|+++|+||+|+..++.+..++.++++++.+
T Consensus 79 ~d~~~~~s~~~~~~~~~~~~~~~~~~~------~piiiv~NK~D~~~~~~~~~~~~~~~~~~~~ 136 (164)
T cd04139 79 FSITDMESFTATAEFREQILRVKDDDN------VPLLLVGNKCDLEDKRQVSSEEAANLARQWG 136 (164)
T ss_pred EECCCHHHHHHHHHHHHHHHHhcCCCC------CCEEEEEEccccccccccCHHHHHHHHHHhC
Confidence 999999999999999999987643 22 6888999999998777888888888887653
No 111
>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.
Probab=99.79 E-value=1.6e-18 Score=131.62 Aligned_cols=123 Identities=15% Similarity=0.098 Sum_probs=93.9
Q ss_pred eeEEE-EeCCCCc---eeEeee-ccCCCcccCcceeeeeEEEEEecCCCe--e--eeCCCchhchhhhhhhhcCCcEEEE
Q psy15036 43 NFGTQ-LGRRGIP---LLKHLK-YLGTGTHGKTVGIVFPAISVTYSIGPR--Y--FRFPLVSRFLSLTTGLYRGTMGFLL 113 (179)
Q Consensus 43 ~~Kiv-lG~~gvG---~~~~~~-~~~~~~~~~Ti~~~~~~k~v~~~~~~~--i--wDt~G~e~~~~~~~~~~~~~~~vil 113 (179)
.+||+ +|++||| +++++. ..+. .+.||+|.++....+.+.++.. + |||+|+++|..++..++++++++++
T Consensus 3 ~~kv~~vG~~~~GKTsli~~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~ 81 (183)
T cd04152 3 SLHIVMLGLDSAGKTTVLYRLKFNEFV-NTVPTKGFNTEKIKVSLGNSKGITFHFWDVGGQEKLRPLWKSYTRCTDGIVF 81 (183)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCcC-CcCCccccceeEEEeeccCCCceEEEEEECCCcHhHHHHHHHHhccCCEEEE
Confidence 57898 9999999 655555 3343 3468888777655555431233 3 9999999999999999999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCCCCCCCHHHHHHHH
Q psy15036 114 IFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQRCREVVTPDQIMFG 173 (179)
Q Consensus 114 vyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~~r~Vs~~e~~~~a 173 (179)
|||.+++++|+.+..|+.++.+..... ..|+++|+||+|+.+ .++.++...++
T Consensus 82 v~D~~~~~~~~~~~~~~~~i~~~~~~~-----~~p~iiv~NK~D~~~--~~~~~~~~~~~ 134 (183)
T cd04152 82 VVDSVDVERMEEAKTELHKITRFSENQ-----GVPVLVLANKQDLPN--ALSVSEVEKLL 134 (183)
T ss_pred EEECCCHHHHHHHHHHHHHHHhhhhcC-----CCcEEEEEECcCccc--cCCHHHHHHHh
Confidence 999999999999999999887654321 158899999999964 45556655554
No 112
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=99.79 E-value=1.6e-18 Score=127.18 Aligned_cols=125 Identities=16% Similarity=0.189 Sum_probs=104.4
Q ss_pred EEE-EeCCCCc---eeEeee-ccCCCcccCcceeeeeEEEEEecCCCee----eeCCCchhchhhhhhhhcCCcEEEEEE
Q psy15036 45 GTQ-LGRRGIP---LLKHLK-YLGTGTHGKTVGIVFPAISVTYSIGPRY----FRFPLVSRFLSLTTGLYRGTMGFLLIF 115 (179)
Q Consensus 45 Kiv-lG~~gvG---~~~~~~-~~~~~~~~~Ti~~~~~~k~v~~~~~~~i----wDt~G~e~~~~~~~~~~~~~~~vilvy 115 (179)
||+ +|++|+| ++..+. ..+...+.+|.+ +...+.+.++ +..+ ||++|++.+..+...+++.++++++||
T Consensus 1 ki~i~G~~~~GKTsli~~l~~~~~~~~~~~~~~-~~~~~~~~~~-~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~ 78 (160)
T cd00876 1 KVVVLGAGGVGKSAITIQFVKGTFVEEYDPTIE-DSYRKTIVVD-GETYTLDILDTAGQEEFSAMRDLYIRQGDGFILVY 78 (160)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCcCcCCChh-HeEEEEEEEC-CEEEEEEEEECCChHHHHHHHHHHHhcCCEEEEEE
Confidence 676 9999999 555554 447778888887 4445666666 5444 999999999999999999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHHHhC-CccCccccceEEEEeeCCCcCCCCCCCHHHHHHHHhhhC
Q psy15036 116 DVTNENSFKDVEKWLLQIKVMDG-ALFTHFELQIVFMRGCLELLQRCREVVTPDQIMFGSTQS 177 (179)
Q Consensus 116 Dit~~~Sf~~l~~w~~~i~~~~~-~~~~~~~~~~iilvGnK~Dl~~~r~Vs~~e~~~~a~~~~ 177 (179)
|+++++|++++..|...+.+... .. +|+++|+||+|+...+.++.+++..++++..
T Consensus 79 d~~~~~s~~~~~~~~~~~~~~~~~~~------~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~ 135 (160)
T cd00876 79 SITDRESFEEIKGYREQILRVKDDED------IPIVLVGNKCDLENERQVSKEEGKALAKEWG 135 (160)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCC------CcEEEEEECCcccccceecHHHHHHHHHHcC
Confidence 99999999999999999987765 22 7899999999998878899999999988754
No 113
>cd04147 Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.78 E-value=1.8e-18 Score=132.89 Aligned_cols=122 Identities=16% Similarity=0.142 Sum_probs=98.5
Q ss_pred EEE-EeCCCCc---eeEeee-ccCCCcccCcceeeeeEEEEEecCCCee----eeCCCchhchhhhhhhhcCCcEEEEEE
Q psy15036 45 GTQ-LGRRGIP---LLKHLK-YLGTGTHGKTVGIVFPAISVTYSIGPRY----FRFPLVSRFLSLTTGLYRGTMGFLLIF 115 (179)
Q Consensus 45 Kiv-lG~~gvG---~~~~~~-~~~~~~~~~Ti~~~~~~k~v~~~~~~~i----wDt~G~e~~~~~~~~~~~~~~~vilvy 115 (179)
||+ +|+.||| ++.++. ..+...+.+|++ ++..+.+.+. +..+ ||++|+++|..++..+++++|++|+||
T Consensus 1 kv~vvG~~~vGKTsll~~~~~~~~~~~~~~t~~-~~~~~~~~~~-~~~~~l~i~D~~G~~~~~~~~~~~~~~ad~vilv~ 78 (198)
T cd04147 1 RLVFMGAAGVGKTALIQRFLYDTFEPKYRRTVE-EMHRKEYEVG-GVSLTLDILDTSGSYSFPAMRKLSIQNSDAFALVY 78 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCccCCCchh-hheeEEEEEC-CEEEEEEEEECCCchhhhHHHHHHhhcCCEEEEEE
Confidence 676 9999999 554444 556777888876 4555677777 7544 999999999999999999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCC-CCCCCHHHHHHHH
Q psy15036 116 DVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQR-CREVVTPDQIMFG 173 (179)
Q Consensus 116 Dit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~-~r~Vs~~e~~~~a 173 (179)
|++++++|+.+..|+..+.+..... ..|++||+||.|+.. ++.+..+++.+.+
T Consensus 79 d~~~~~s~~~~~~~~~~i~~~~~~~-----~~piilv~NK~Dl~~~~~~v~~~~~~~~~ 132 (198)
T cd04147 79 AVDDPESFEEVERLREEILEVKEDK-----FVPIVVVGNKADSLEEERQVPAKDALSTV 132 (198)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCC-----CCcEEEEEEccccccccccccHHHHHHHH
Confidence 9999999999999999998765431 168899999999965 5778877766554
No 114
>cd01893 Miro1 Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.77 E-value=3e-18 Score=127.77 Aligned_cols=111 Identities=14% Similarity=0.140 Sum_probs=84.2
Q ss_pred eEEE-EeCCCCc---eeEeee-ccCCCcccCcceeeeeEEEEEecCCCee----eeCCCchhchhhhhhhhcCCcEEEEE
Q psy15036 44 FGTQ-LGRRGIP---LLKHLK-YLGTGTHGKTVGIVFPAISVTYSIGPRY----FRFPLVSRFLSLTTGLYRGTMGFLLI 114 (179)
Q Consensus 44 ~Kiv-lG~~gvG---~~~~~~-~~~~~~~~~Ti~~~~~~k~v~~~~~~~i----wDt~G~e~~~~~~~~~~~~~~~vilv 114 (179)
.||+ +|+.||| ++.++. +.+.+.+.++.+ ++ .....+. +..+ |||+|++++......+++.++++++|
T Consensus 1 ~kv~ivG~~~vGKTsl~~~l~~~~~~~~~~~~~~-~~-~~~~~~~-~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~ilv 77 (166)
T cd01893 1 VRIVLIGDEGVGKSSLIMSLVSEEFPENVPRVLP-EI-TIPADVT-PERVPTTIVDTSSRPQDRANLAAEIRKANVICLV 77 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCcCCccCCCccc-ce-Eeeeeec-CCeEEEEEEeCCCchhhhHHHhhhcccCCEEEEE
Confidence 3887 9999999 555554 555555444432 22 2333444 4444 99999999988888889999999999
Q ss_pred EeCCChhhHHHHH-HHHHHHHHHhCCccCccccceEEEEeeCCCcCCCCCC
Q psy15036 115 FDVTNENSFKDVE-KWLLQIKVMDGALFTHFELQIVFMRGCLELLQRCREV 164 (179)
Q Consensus 115 yDit~~~Sf~~l~-~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~~r~V 164 (179)
||+++++||+.+. .|++.+++.... .|+++||||+|+.+.+..
T Consensus 78 ~d~~~~~s~~~~~~~~~~~i~~~~~~-------~pviiv~nK~Dl~~~~~~ 121 (166)
T cd01893 78 YSVDRPSTLERIRTKWLPLIRRLGVK-------VPIILVGNKSDLRDGSSQ 121 (166)
T ss_pred EECCCHHHHHHHHHHHHHHHHHhCCC-------CCEEEEEEchhcccccch
Confidence 9999999999985 799988876543 689999999999776553
No 115
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=99.77 E-value=3.2e-18 Score=127.29 Aligned_cols=125 Identities=18% Similarity=0.179 Sum_probs=99.1
Q ss_pred eEEE-EeCCCCc---eeEeee-ccCCCcccCcceeeeeEEEEEecCCCee----eeCCCchhchhhhhhhhcCCcEEEEE
Q psy15036 44 FGTQ-LGRRGIP---LLKHLK-YLGTGTHGKTVGIVFPAISVTYSIGPRY----FRFPLVSRFLSLTTGLYRGTMGFLLI 114 (179)
Q Consensus 44 ~Kiv-lG~~gvG---~~~~~~-~~~~~~~~~Ti~~~~~~k~v~~~~~~~i----wDt~G~e~~~~~~~~~~~~~~~vilv 114 (179)
+||+ +|++|+| +++.+. ..+...+.+|+...+ ...+..+ +..+ ||++|++++..+...+++.+|++++|
T Consensus 1 iki~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~~l~~~D~~g~~~~~~~~~~~~~~~~~~i~v 78 (171)
T cd00157 1 IKIVVVGDGAVGKTCLLISYTTGKFPTEYVPTVFDNY-SATVTVD-GKQVNLGLWDTAGQEEYDRLRPLSYPNTDVFLIC 78 (171)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeee-EEEEEEC-CEEEEEEEEeCCCcccccccchhhcCCCCEEEEE
Confidence 5887 9999999 555555 445567778876444 3455666 6554 99999999999999999999999999
Q ss_pred EeCCChhhHHHH-HHHHHHHHHHhCCccCccccceEEEEeeCCCcCCCC-----------CCCHHHHHHHHhhhC
Q psy15036 115 FDVTNENSFKDV-EKWLLQIKVMDGALFTHFELQIVFMRGCLELLQRCR-----------EVVTPDQIMFGSTQS 177 (179)
Q Consensus 115 yDit~~~Sf~~l-~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~~r-----------~Vs~~e~~~~a~~~~ 177 (179)
||+++++||..+ ..|+..+...... .|+++||||+|+.+.+ .+..+++.+++...+
T Consensus 79 ~d~~~~~s~~~~~~~~~~~~~~~~~~-------~p~ivv~nK~Dl~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 146 (171)
T cd00157 79 FSVDSPSSFENVKTKWIPEIRHYCPN-------VPIILVGTKIDLRDDENTLKKLEKGKEPITPEEGEKLAKEIG 146 (171)
T ss_pred EECCCHHHHHHHHHHHHHHHHhhCCC-------CCEEEEEccHHhhhchhhhhhcccCCCccCHHHHHHHHHHhC
Confidence 999999999988 5799888876654 6889999999996644 457888888887654
No 116
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=99.77 E-value=6.3e-18 Score=131.01 Aligned_cols=113 Identities=24% Similarity=0.282 Sum_probs=94.2
Q ss_pred eeEEE-EeCCCCc---eeEeee-ccCCCcccCcceeeeeEEEEEecCCCee----eeCCCchhchhhhhhhhcCCcEEEE
Q psy15036 43 NFGTQ-LGRRGIP---LLKHLK-YLGTGTHGKTVGIVFPAISVTYSIGPRY----FRFPLVSRFLSLTTGLYRGTMGFLL 113 (179)
Q Consensus 43 ~~Kiv-lG~~gvG---~~~~~~-~~~~~~~~~Ti~~~~~~k~v~~~~~~~i----wDt~G~e~~~~~~~~~~~~~~~vil 113 (179)
.+||+ +|++||| ++.++. ..+...+.+|++..+........ +..+ |||+||++|+.+++.|+++++++++
T Consensus 5 ~~kivv~G~~g~GKTtl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~-~~~~~~~~~Dt~gq~~~~~~~~~y~~~~~~~l~ 83 (219)
T COG1100 5 EFKIVVLGDGGVGKTTLLNRLVGDEFPEGYPPTIGNLDPAKTIEPY-RRNIKLQLWDTAGQEEYRSLRPEYYRGANGILI 83 (219)
T ss_pred eEEEEEEcCCCccHHHHHHHHhcCcCcccCCCceeeeeEEEEEEeC-CCEEEEEeecCCCHHHHHHHHHHHhcCCCEEEE
Confidence 38998 9999999 555554 77888899999988876666554 4344 9999999999999999999999999
Q ss_pred EEeCCC-hhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCCCC
Q psy15036 114 IFDVTN-ENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQRCR 162 (179)
Q Consensus 114 vyDit~-~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~~r 162 (179)
|||.++ +.+++....|.+++....+.. .|+++||||+||...+
T Consensus 84 ~~d~~~~~~~~~~~~~~~~~l~~~~~~~------~~iilv~nK~Dl~~~~ 127 (219)
T COG1100 84 VYDSTLRESSDELTEEWLEELRELAPDD------VPILLVGNKIDLFDEQ 127 (219)
T ss_pred EEecccchhhhHHHHHHHHHHHHhCCCC------ceEEEEecccccccch
Confidence 999999 555666689999999888644 5899999999998764
No 117
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=99.76 E-value=5.6e-18 Score=124.90 Aligned_cols=108 Identities=14% Similarity=0.125 Sum_probs=86.0
Q ss_pred EEE-EeCCCCc---eeEeeecc--CCCcccCcceeeeeEEEEEecCCCee--eeCCCchhchhhhhhhhcCCcEEEEEEe
Q psy15036 45 GTQ-LGRRGIP---LLKHLKYL--GTGTHGKTVGIVFPAISVTYSIGPRY--FRFPLVSRFLSLTTGLYRGTMGFLLIFD 116 (179)
Q Consensus 45 Kiv-lG~~gvG---~~~~~~~~--~~~~~~~Ti~~~~~~k~v~~~~~~~i--wDt~G~e~~~~~~~~~~~~~~~vilvyD 116 (179)
+|+ +|+++|| ++.++... +...+.||+|.... .+..+ +..+ ||++|+++|..++..++++++++|+|||
T Consensus 1 ~i~~vG~~~~GKTsl~~~l~~~~~~~~~~~~t~g~~~~--~~~~~-~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~D 77 (162)
T cd04157 1 NILVVGLDNSGKTTIINQLKPENAQSQIIVPTVGFNVE--SFEKG-NLSFTAFDMSGQGKYRGLWEHYYKNIQGIIFVID 77 (162)
T ss_pred CEEEECCCCCCHHHHHHHHcccCCCcceecCccccceE--EEEEC-CEEEEEEECCCCHhhHHHHHHHHccCCEEEEEEe
Confidence 466 9999999 66666643 45678899986543 34444 5455 9999999999999999999999999999
Q ss_pred CCChhhHHHHHHHHHHHHHHh---CCccCccccceEEEEeeCCCcCCC
Q psy15036 117 VTNENSFKDVEKWLLQIKVMD---GALFTHFELQIVFMRGCLELLQRC 161 (179)
Q Consensus 117 it~~~Sf~~l~~w~~~i~~~~---~~~~~~~~~~~iilvGnK~Dl~~~ 161 (179)
.+++.+|..+..|+..+.+.. ..+ .|+++|+||+|+.++
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~------~p~iiv~NK~Dl~~~ 119 (162)
T cd04157 78 SSDRLRLVVVKDELELLLNHPDIKHRR------VPILFFANKMDLPDA 119 (162)
T ss_pred CCcHHHHHHHHHHHHHHHcCcccccCC------CCEEEEEeCccccCC
Confidence 999999999999999886532 122 688999999999753
No 118
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=99.76 E-value=7.4e-18 Score=126.89 Aligned_cols=125 Identities=21% Similarity=0.220 Sum_probs=101.7
Q ss_pred eEEE-EeCCCCc---eeEeee-ccCCCcccCcceeeeeEEEEEecCCCee----eeCCCchhchhhhhhhhcCCcEEEEE
Q psy15036 44 FGTQ-LGRRGIP---LLKHLK-YLGTGTHGKTVGIVFPAISVTYSIGPRY----FRFPLVSRFLSLTTGLYRGTMGFLLI 114 (179)
Q Consensus 44 ~Kiv-lG~~gvG---~~~~~~-~~~~~~~~~Ti~~~~~~k~v~~~~~~~i----wDt~G~e~~~~~~~~~~~~~~~vilv 114 (179)
.||+ +|++||| ++.++. ..+...+.||.+..+ .+.+.++ +..+ ||++|+++|..+...++..++++++|
T Consensus 2 ~kv~l~G~~g~GKTtl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~-~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v 79 (180)
T cd04137 2 RKIAVLGSRSVGKSSLTVQFVEGHFVESYYPTIENTF-SKIIRYK-GQDYHLEIVDTAGQDEYSILPQKYSIGIHGYILV 79 (180)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCccccCcchhhhE-EEEEEEC-CEEEEEEEEECCChHhhHHHHHHHHhhCCEEEEE
Confidence 5887 9999999 555554 445667788887655 3556666 5553 99999999999999999999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHHHhC-CccCccccceEEEEeeCCCcCCCCCCCHHHHHHHHhhh
Q psy15036 115 FDVTNENSFKDVEKWLLQIKVMDG-ALFTHFELQIVFMRGCLELLQRCREVVTPDQIMFGSTQ 176 (179)
Q Consensus 115 yDit~~~Sf~~l~~w~~~i~~~~~-~~~~~~~~~~iilvGnK~Dl~~~r~Vs~~e~~~~a~~~ 176 (179)
||+++.++|+.+..|+..+.+... .+ .|+++|+||+|+...+.+..++...++.+.
T Consensus 80 ~d~~~~~~~~~~~~~~~~~~~~~~~~~------~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~~ 136 (180)
T cd04137 80 YSVTSRKSFEVVKVIYDKILDMLGKES------VPIVLVGNKSDLHTQRQVSTEEGKELAESW 136 (180)
T ss_pred EECCCHHHHHHHHHHHHHHHHhcCCCC------CCEEEEEEchhhhhcCccCHHHHHHHHHHc
Confidence 999999999999999888876543 22 578899999999887888888888887654
No 119
>KOG0096|consensus
Probab=99.75 E-value=4.3e-18 Score=127.52 Aligned_cols=119 Identities=18% Similarity=0.214 Sum_probs=99.9
Q ss_pred ccccccCceeeEEE-EeCCCCc----eeEeeeccCCCcccCcceeeeeEEEEEecCCCee----eeCCCchhchhhhhhh
Q psy15036 34 MTAAKEFSFNFGTQ-LGRRGIP----LLKHLKYLGTGTHGKTVGIVFPAISVTYSIGPRY----FRFPLVSRFLSLTTGL 104 (179)
Q Consensus 34 m~~~~~~~~~~Kiv-lG~~gvG----~~~~~~~~~~~~~~~Ti~~~~~~k~v~~~~~~~i----wDt~G~e~~~~~~~~~ 104 (179)
|+.+...-..+|++ +|+.|.| ..+.+++.|...|.+|+|++... .+...+...+ |||+|||++..++..|
T Consensus 1 M~~p~~~~~~fklvlvGdgg~gKtt~vkr~ltgeFe~~y~at~Gv~~~p-l~f~tn~g~irf~~wdtagqEk~gglrdgy 79 (216)
T KOG0096|consen 1 MTSPPQQGLTFKLVLVGDGGTGKTTFVKRHLTGEFEKTYPATLGVEVHP-LLFDTNRGQIRFNVWDTAGQEKKGGLRDGY 79 (216)
T ss_pred CCCCccccceEEEEEecCCcccccchhhhhhcccceecccCcceeEEee-eeeecccCcEEEEeeecccceeeccccccc
Confidence 33333334689998 9999999 56777899999999999998763 3333313334 9999999999999999
Q ss_pred hcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCC
Q psy15036 105 YRGTMGFLLIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQR 160 (179)
Q Consensus 105 ~~~~~~vilvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~ 160 (179)
|-++.|.|++||++.+-++.++.+|..++.+.+.+ .||+++|||.|...
T Consensus 80 yI~~qcAiimFdVtsr~t~~n~~rwhrd~~rv~~N-------iPiv~cGNKvDi~~ 128 (216)
T KOG0096|consen 80 YIQGQCAIIMFDVTSRFTYKNVPRWHRDLVRVREN-------IPIVLCGNKVDIKA 128 (216)
T ss_pred EEecceeEEEeeeeehhhhhcchHHHHHHHHHhcC-------CCeeeeccceeccc
Confidence 99999999999999999999999999999988876 69999999999865
No 120
>KOG4423|consensus
Probab=99.73 E-value=3.4e-20 Score=138.49 Aligned_cols=151 Identities=16% Similarity=0.191 Sum_probs=116.0
Q ss_pred EeccccccccccccccccccCceeeEEE-EeCCCCc----eeEeeeccCCCcccCcceeeeeEEEEEecCCCee-----e
Q psy15036 20 IFGKPTYRCTKVTKMTAAKEFSFNFGTQ-LGRRGIP----LLKHLKYLGTGTHGKTVGIVFPAISVTYSIGPRY-----F 89 (179)
Q Consensus 20 ~~~~~~~~~~~~~~m~~~~~~~~~~Kiv-lG~~gvG----~~~~~~~~~~~~~~~Ti~~~~~~k~v~~~~~~~i-----w 89 (179)
+||.+..+.+....+.. -.+++|++ +|+.||| +.+++...|...|..|||++|.-+.++.+ +..+ |
T Consensus 5 ~fG~~~~~~a~a~ap~k---r~hL~k~lVig~~~vgkts~i~ryv~~nfs~~yRAtIgvdfalkVl~wd-d~t~vRlqLw 80 (229)
T KOG4423|consen 5 VFGSGISRIARASAPKK---REHLFKVLVIGDLGVGKTSSIKRYVHQNFSYHYRATIGVDFALKVLQWD-DKTIVRLQLW 80 (229)
T ss_pred ccCcchhhhhhcCCCch---hhhhhhhheeeeccccchhHHHHHHHHHHHHHHHHHHhHHHHHHHhccC-hHHHHHHHHh
Confidence 57777777765554433 45799997 9999999 34445588899999999999987877777 6665 9
Q ss_pred eCCCchhchhhhhhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCCCCCCC-HHH
Q psy15036 90 RFPLVSRFLSLTTGLYRGTMGFLLIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQRCREVV-TPD 168 (179)
Q Consensus 90 Dt~G~e~~~~~~~~~~~~~~~vilvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~~r~Vs-~~e 168 (179)
|.+||++|..+.+.||+.+++..+|||+++.-+|+.+..|.+++..-... ++....|+++.+||||.+..-..+ ...
T Consensus 81 dIagQerfg~mtrVyykea~~~~iVfdvt~s~tfe~~skwkqdldsk~qL--png~Pv~~vllankCd~e~~a~~~~~~~ 158 (229)
T KOG4423|consen 81 DIAGQERFGNMTRVYYKEAHGAFIVFDVTRSLTFEPVSKWKQDLDSKLQL--PNGTPVPCVLLANKCDQEKSAKNEATRQ 158 (229)
T ss_pred cchhhhhhcceEEEEecCCcceEEEEEccccccccHHHHHHHhccCcccC--CCCCcchheeccchhccChHhhhhhHHH
Confidence 99999999999999999999999999999999999999999998643322 112225678889999987522222 244
Q ss_pred HHHHHhhh
Q psy15036 169 QIMFGSTQ 176 (179)
Q Consensus 169 ~~~~a~~~ 176 (179)
...|.+++
T Consensus 159 ~d~f~ken 166 (229)
T KOG4423|consen 159 FDNFKKEN 166 (229)
T ss_pred HHHHHhcc
Confidence 55555544
No 121
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=99.73 E-value=3.9e-17 Score=124.06 Aligned_cols=122 Identities=16% Similarity=0.080 Sum_probs=97.6
Q ss_pred eeeEEE-EeCCCCc---eeEeeeccCCCcccCcceeeeeEEEEEecCCCee--eeCCCchhchhhhhhhhcCCcEEEEEE
Q psy15036 42 FNFGTQ-LGRRGIP---LLKHLKYLGTGTHGKTVGIVFPAISVTYSIGPRY--FRFPLVSRFLSLTTGLYRGTMGFLLIF 115 (179)
Q Consensus 42 ~~~Kiv-lG~~gvG---~~~~~~~~~~~~~~~Ti~~~~~~k~v~~~~~~~i--wDt~G~e~~~~~~~~~~~~~~~vilvy 115 (179)
..+||+ +|++|+| ++..+.......+.||++... ..+.++ +..+ ||++|++++..++..++++++++++||
T Consensus 18 ~~~ki~ilG~~~~GKStLi~~l~~~~~~~~~~T~~~~~--~~i~~~-~~~~~l~D~~G~~~~~~~~~~~~~~ad~iilV~ 94 (190)
T cd00879 18 KEAKILFLGLDNAGKTTLLHMLKDDRLAQHVPTLHPTS--EELTIG-NIKFKTFDLGGHEQARRLWKDYFPEVDGIVFLV 94 (190)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCcccCCccCcce--EEEEEC-CEEEEEEECCCCHHHHHHHHHHhccCCEEEEEE
Confidence 468887 9999999 666665433356778887543 456677 7666 999999999999999999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHHHhC-CccCccccceEEEEeeCCCcCCCCCCCHHHHHHHHh
Q psy15036 116 DVTNENSFKDVEKWLLQIKVMDG-ALFTHFELQIVFMRGCLELLQRCREVVTPDQIMFGS 174 (179)
Q Consensus 116 Dit~~~Sf~~l~~w~~~i~~~~~-~~~~~~~~~~iilvGnK~Dl~~~r~Vs~~e~~~~a~ 174 (179)
|++++++|+....|+.++.+... .+ .|+++++||+|+.+ .++.++.+++.+
T Consensus 95 D~~~~~s~~~~~~~~~~i~~~~~~~~------~pvivv~NK~Dl~~--~~~~~~~~~~~~ 146 (190)
T cd00879 95 DAADPERFQESKEELDSLLSDEELAN------VPFLILGNKIDLPG--AVSEEELRQALG 146 (190)
T ss_pred ECCcHHHHHHHHHHHHHHHcCccccC------CCEEEEEeCCCCCC--CcCHHHHHHHhC
Confidence 99999999999989888875432 22 58889999999964 788888887764
No 122
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=99.73 E-value=5.5e-17 Score=122.01 Aligned_cols=114 Identities=12% Similarity=0.176 Sum_probs=88.9
Q ss_pred eeEEE-EeCCCCc---eeEeee-ccCCCcccCcceeeeeEEEEEecCCCee--eeCCCchhchhhhhhhhcCCcEEEEEE
Q psy15036 43 NFGTQ-LGRRGIP---LLKHLK-YLGTGTHGKTVGIVFPAISVTYSIGPRY--FRFPLVSRFLSLTTGLYRGTMGFLLIF 115 (179)
Q Consensus 43 ~~Kiv-lG~~gvG---~~~~~~-~~~~~~~~~Ti~~~~~~k~v~~~~~~~i--wDt~G~e~~~~~~~~~~~~~~~vilvy 115 (179)
.+||+ +|++++| ++.++. +.+. .+.||++.++. .+.++ +..+ ||++|++++...+..+++++|++++||
T Consensus 15 ~~kv~~~G~~~~GKTsl~~~l~~~~~~-~~~~t~~~~~~--~~~~~-~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~V~ 90 (174)
T cd04153 15 EYKVIIVGLDNAGKTTILYQFLLGEVV-HTSPTIGSNVE--EIVYK-NIRFLMWDIGGQESLRSSWNTYYTNTDAVILVI 90 (174)
T ss_pred ccEEEEECCCCCCHHHHHHHHccCCCC-CcCCccccceE--EEEEC-CeEEEEEECCCCHHHHHHHHHHhhcCCEEEEEE
Confidence 47897 9999999 555554 4444 46788886653 45556 6555 999999999999999999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHHHhC-CccCccccceEEEEeeCCCcCCCCCCCHHH
Q psy15036 116 DVTNENSFKDVEKWLLQIKVMDG-ALFTHFELQIVFMRGCLELLQRCREVVTPD 168 (179)
Q Consensus 116 Dit~~~Sf~~l~~w~~~i~~~~~-~~~~~~~~~~iilvGnK~Dl~~~r~Vs~~e 168 (179)
|.+++++|..+..|+..+.+... .+ .|+++++||+|+.+ .++.++
T Consensus 91 D~s~~~~~~~~~~~l~~~~~~~~~~~------~p~viv~NK~Dl~~--~~~~~~ 136 (174)
T cd04153 91 DSTDRERLPLTKEELYKMLAHEDLRK------AVLLVLANKQDLKG--AMTPAE 136 (174)
T ss_pred ECCCHHHHHHHHHHHHHHHhchhhcC------CCEEEEEECCCCCC--CCCHHH
Confidence 99999999999888887765432 22 68889999999965 344444
No 123
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=99.72 E-value=5.6e-17 Score=123.22 Aligned_cols=120 Identities=13% Similarity=0.062 Sum_probs=93.4
Q ss_pred eeeEEE-EeCCCCc---eeEeeeccCCCcccCcceeeeeEEEEEecCCCee--eeCCCchhchhhhhhhhcCCcEEEEEE
Q psy15036 42 FNFGTQ-LGRRGIP---LLKHLKYLGTGTHGKTVGIVFPAISVTYSIGPRY--FRFPLVSRFLSLTTGLYRGTMGFLLIF 115 (179)
Q Consensus 42 ~~~Kiv-lG~~gvG---~~~~~~~~~~~~~~~Ti~~~~~~k~v~~~~~~~i--wDt~G~e~~~~~~~~~~~~~~~vilvy 115 (179)
..+||+ +|.+||| ++.++.......+.||.+... ..+.++ +..+ ||++|+++++.++..|+++++++++|+
T Consensus 16 ~~~~i~ivG~~~~GKTsli~~l~~~~~~~~~~t~~~~~--~~~~~~-~~~~~~~D~~G~~~~~~~~~~~~~~ad~ii~vv 92 (184)
T smart00178 16 KHAKILFLGLDNAGKTTLLHMLKNDRLAQHQPTQHPTS--EELAIG-NIKFTTFDLGGHQQARRLWKDYFPEVNGIVYLV 92 (184)
T ss_pred ccCEEEEECCCCCCHHHHHHHHhcCCCcccCCccccce--EEEEEC-CEEEEEEECCCCHHHHHHHHHHhCCCCEEEEEE
Confidence 458897 9999999 666665433345677776543 345566 6666 999999999999999999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHHHhC-CccCccccceEEEEeeCCCcCCCCCCCHHHHHHH
Q psy15036 116 DVTNENSFKDVEKWLLQIKVMDG-ALFTHFELQIVFMRGCLELLQRCREVVTPDQIMF 172 (179)
Q Consensus 116 Dit~~~Sf~~l~~w~~~i~~~~~-~~~~~~~~~~iilvGnK~Dl~~~r~Vs~~e~~~~ 172 (179)
|.+++++|.....|+.++.+... .+ .|+++|+||+|+.. .++.++.++.
T Consensus 93 D~~~~~~~~~~~~~l~~l~~~~~~~~------~piliv~NK~Dl~~--~~~~~~i~~~ 142 (184)
T smart00178 93 DAYDKERFAESKRELDALLSDEELAT------VPFLILGNKIDAPY--AASEDELRYA 142 (184)
T ss_pred ECCcHHHHHHHHHHHHHHHcChhhcC------CCEEEEEeCccccC--CCCHHHHHHH
Confidence 99999999999988888765321 22 68899999999964 6777776644
No 124
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=99.71 E-value=8.2e-17 Score=118.65 Aligned_cols=108 Identities=18% Similarity=0.091 Sum_probs=83.2
Q ss_pred EEE-EeCCCCc---eeEeeeccCCCcccCcceeeeeEEEEEecCCCee--eeCCCchhchhhhhhhhcCCcEEEEEEeCC
Q psy15036 45 GTQ-LGRRGIP---LLKHLKYLGTGTHGKTVGIVFPAISVTYSIGPRY--FRFPLVSRFLSLTTGLYRGTMGFLLIFDVT 118 (179)
Q Consensus 45 Kiv-lG~~gvG---~~~~~~~~~~~~~~~Ti~~~~~~k~v~~~~~~~i--wDt~G~e~~~~~~~~~~~~~~~vilvyDit 118 (179)
||+ +|++||| ++.++.......+.||++.++ +.+..+.+..+ ||++|++++..++..++++++++|+|||.+
T Consensus 1 ~i~i~G~~~~GKTsl~~~~~~~~~~~~~~t~~~~~--~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~iv~v~D~~ 78 (160)
T cd04156 1 QVLLLGLDSAGKSTLLYKLKHAELVTTIPTVGFNV--EMLQLEKHLSLTVWDVGGQEKMRTVWKCYLENTDGLVYVVDSS 78 (160)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCcccccCccCcce--EEEEeCCceEEEEEECCCCHhHHHHHHHHhccCCEEEEEEECC
Confidence 576 9999999 656655332234578888654 34444412334 999999999999999999999999999999
Q ss_pred ChhhHHHHHHHHHHHHHHhC-CccCccccceEEEEeeCCCcCC
Q psy15036 119 NENSFKDVEKWLLQIKVMDG-ALFTHFELQIVFMRGCLELLQR 160 (179)
Q Consensus 119 ~~~Sf~~l~~w~~~i~~~~~-~~~~~~~~~~iilvGnK~Dl~~ 160 (179)
++.+|..+..|+.++.+... .+ .|+++|+||+|+..
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~------~piilv~nK~Dl~~ 115 (160)
T cd04156 79 DEARLDESQKELKHILKNEHIKG------VPVVLLANKQDLPG 115 (160)
T ss_pred cHHHHHHHHHHHHHHHhchhhcC------CCEEEEEECccccc
Confidence 99999999999988865432 22 68999999999964
No 125
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=99.71 E-value=9.6e-17 Score=118.16 Aligned_cols=109 Identities=17% Similarity=0.192 Sum_probs=88.1
Q ss_pred EEE-EeCCCCc---eeEeeeccCCCcccCcceeeeeEEEEEecCCCee--eeCCCchhchhhhhhhhcCCcEEEEEEeCC
Q psy15036 45 GTQ-LGRRGIP---LLKHLKYLGTGTHGKTVGIVFPAISVTYSIGPRY--FRFPLVSRFLSLTTGLYRGTMGFLLIFDVT 118 (179)
Q Consensus 45 Kiv-lG~~gvG---~~~~~~~~~~~~~~~Ti~~~~~~k~v~~~~~~~i--wDt~G~e~~~~~~~~~~~~~~~vilvyDit 118 (179)
||+ +|.+||| ++..+.+.....+.+|++.... .+.+. +..+ ||++|++++..++..++++++++++|||++
T Consensus 1 ki~iiG~~~~GKssli~~~~~~~~~~~~~t~~~~~~--~~~~~-~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~D~~ 77 (158)
T cd00878 1 RILILGLDGAGKTTILYKLKLGEVVTTIPTIGFNVE--TVEYK-NVSFTVWDVGGQDKIRPLWKHYYENTNGIIFVVDSS 77 (158)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCCCCCCCCcCcceE--EEEEC-CEEEEEEECCCChhhHHHHHHHhccCCEEEEEEECC
Confidence 676 9999999 6666665445677888886553 45566 5555 999999999999999999999999999999
Q ss_pred ChhhHHHHHHHHHHHHHHhC-CccCccccceEEEEeeCCCcCCCC
Q psy15036 119 NENSFKDVEKWLLQIKVMDG-ALFTHFELQIVFMRGCLELLQRCR 162 (179)
Q Consensus 119 ~~~Sf~~l~~w~~~i~~~~~-~~~~~~~~~~iilvGnK~Dl~~~r 162 (179)
++++|..+..|+..+.+... .. .|+++|+||+|+...+
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~------~piiiv~nK~D~~~~~ 116 (158)
T cd00878 78 DRERIEEAKEELHKLLNEEELKG------VPLLIFANKQDLPGAL 116 (158)
T ss_pred CHHHHHHHHHHHHHHHhCcccCC------CcEEEEeeccCCcccc
Confidence 99999999999888876432 22 6889999999997643
No 126
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=99.71 E-value=1.5e-16 Score=117.46 Aligned_cols=107 Identities=14% Similarity=0.141 Sum_probs=81.8
Q ss_pred EEE-EeCCCCc---eeEeeeccCCCcccCcceeeeeEEEEEecCCCee--eeCCCchhchhhhhhhhcCCcEEEEEEeCC
Q psy15036 45 GTQ-LGRRGIP---LLKHLKYLGTGTHGKTVGIVFPAISVTYSIGPRY--FRFPLVSRFLSLTTGLYRGTMGFLLIFDVT 118 (179)
Q Consensus 45 Kiv-lG~~gvG---~~~~~~~~~~~~~~~Ti~~~~~~k~v~~~~~~~i--wDt~G~e~~~~~~~~~~~~~~~vilvyDit 118 (179)
||+ +|+++|| ++..+.......+.||++.++. .+... +..+ ||++|+++|..+++.++++++++++|||.+
T Consensus 1 kv~lvG~~~~GKTsl~~~l~~~~~~~~~~t~~~~~~--~~~~~-~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ii~v~d~~ 77 (158)
T cd04151 1 RILILGLDNAGKTTILYRLQLGEVVTTIPTIGFNVE--TVTYK-NLKFQVWDLGGQTSIRPYWRCYYSNTDAIIYVVDST 77 (158)
T ss_pred CEEEECCCCCCHHHHHHHHccCCCcCcCCccCcCeE--EEEEC-CEEEEEEECCCCHHHHHHHHHHhcCCCEEEEEEECC
Confidence 576 9999999 5555543222346788886653 44455 5555 999999999999999999999999999999
Q ss_pred ChhhHHHHHHHHHHHHHH-hCCccCccccceEEEEeeCCCcCC
Q psy15036 119 NENSFKDVEKWLLQIKVM-DGALFTHFELQIVFMRGCLELLQR 160 (179)
Q Consensus 119 ~~~Sf~~l~~w~~~i~~~-~~~~~~~~~~~~iilvGnK~Dl~~ 160 (179)
++.++.....|+..+.+. ...+ .|+++|+||+|+.+
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~------~piiiv~nK~Dl~~ 114 (158)
T cd04151 78 DRDRLGTAKEELHAMLEEEELKG------AVLLVFANKQDMPG 114 (158)
T ss_pred CHHHHHHHHHHHHHHHhchhhcC------CcEEEEEeCCCCCC
Confidence 999999887766655432 2222 68899999999965
No 127
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=99.70 E-value=1e-16 Score=118.89 Aligned_cols=119 Identities=15% Similarity=0.161 Sum_probs=91.8
Q ss_pred EEE-EeCCCCc---eeEeeec-------cCCCcccCcceeeeeEEEEEecCCCee--eeCCCchhchhhhhhhhcCCcEE
Q psy15036 45 GTQ-LGRRGIP---LLKHLKY-------LGTGTHGKTVGIVFPAISVTYSIGPRY--FRFPLVSRFLSLTTGLYRGTMGF 111 (179)
Q Consensus 45 Kiv-lG~~gvG---~~~~~~~-------~~~~~~~~Ti~~~~~~k~v~~~~~~~i--wDt~G~e~~~~~~~~~~~~~~~v 111 (179)
+|+ +|+.||| ++..+.. .....+.||++.++. .+.++ +..+ ||++|++.+..+...++++++++
T Consensus 1 ~i~~vG~~~~GKstLi~~l~~~~~~~~~~~~~~~~~t~~~~~~--~~~~~-~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~ 77 (167)
T cd04160 1 SVLILGLDNAGKTTFLEQLKTLFSKYKGLPPSKITPTVGLNIG--TIEVG-NARLKFWDLGGQESLRSLWDKYYAECHAI 77 (167)
T ss_pred CEEEEecCCCCHHHHHHHHhhhcccccCCcccccCCccccceE--EEEEC-CEEEEEEECCCChhhHHHHHHHhCCCCEE
Confidence 466 9999999 5444432 224466788887764 45666 6666 99999999999999999999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHHHhC-CccCccccceEEEEeeCCCcCCCCCCCHHHHHHHHh
Q psy15036 112 LLIFDVTNENSFKDVEKWLLQIKVMDG-ALFTHFELQIVFMRGCLELLQRCREVVTPDQIMFGS 174 (179)
Q Consensus 112 ilvyDit~~~Sf~~l~~w~~~i~~~~~-~~~~~~~~~~iilvGnK~Dl~~~r~Vs~~e~~~~a~ 174 (179)
++|||.+++++++.+..|+..+.+... .+ .|+++|+||+|+.. .++.++..++.+
T Consensus 78 v~vvd~~~~~~~~~~~~~~~~~~~~~~~~~------~p~ilv~NK~D~~~--~~~~~~~~~~~~ 133 (167)
T cd04160 78 IYVIDSTDRERFEESKSALEKVLRNEALEG------VPLLILANKQDLPD--ALSVEEIKEVFQ 133 (167)
T ss_pred EEEEECchHHHHHHHHHHHHHHHhChhhcC------CCEEEEEEcccccc--CCCHHHHHHHhc
Confidence 999999999999999999888875432 22 68899999999865 455666665543
No 128
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=99.70 E-value=6.4e-17 Score=113.93 Aligned_cols=105 Identities=18% Similarity=0.230 Sum_probs=73.2
Q ss_pred EEE-EeCCCCc---eeEeeeccCCC---cccCcceeeeeEEEEEecCCCe--e--eeCCCchhchhhhhhhhcCCcEEEE
Q psy15036 45 GTQ-LGRRGIP---LLKHLKYLGTG---THGKTVGIVFPAISVTYSIGPR--Y--FRFPLVSRFLSLTTGLYRGTMGFLL 113 (179)
Q Consensus 45 Kiv-lG~~gvG---~~~~~~~~~~~---~~~~Ti~~~~~~k~v~~~~~~~--i--wDt~G~e~~~~~~~~~~~~~~~vil 113 (179)
||+ +|+.||| +++.+...... .+.++.+.++........ ... + ||++|++.+...+..++..+|++++
T Consensus 1 kI~V~G~~g~GKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~il 79 (119)
T PF08477_consen 1 KIVVLGDSGVGKTSLIRRLCGGEFPDNSVPEETSEITIGVDVIVVD-GDRQSLQFWDFGGQEEFYSQHQFFLKKADAVIL 79 (119)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS--------SSTTSCEEEEEEEET-TEEEEEEEEEESSSHCHHCTSHHHHHHSCEEEE
T ss_pred CEEEECcCCCCHHHHHHHHhcCCCcccccccccCCCcEEEEEEEec-CCceEEEEEecCccceecccccchhhcCcEEEE
Confidence 786 9999999 77766633222 223333333433334443 332 3 9999999999888888999999999
Q ss_pred EEeCCChhhHHHHHHH---HHHHHHHhCCccCccccceEEEEeeCCC
Q psy15036 114 IFDVTNENSFKDVEKW---LLQIKVMDGALFTHFELQIVFMRGCLEL 157 (179)
Q Consensus 114 vyDit~~~Sf~~l~~w---~~~i~~~~~~~~~~~~~~~iilvGnK~D 157 (179)
|||+++++||+.+..| +..++..... .|++|||||.|
T Consensus 80 v~D~s~~~s~~~~~~~~~~l~~~~~~~~~-------~piilv~nK~D 119 (119)
T PF08477_consen 80 VYDLSDPESLEYLSQLLKWLKNIRKRDKN-------IPIILVGNKSD 119 (119)
T ss_dssp EEECCGHHHHHHHHHHHHHHHHHHHHSSC-------SEEEEEEE-TC
T ss_pred EEcCCChHHHHHHHHHHHHHHHHHccCCC-------CCEEEEEeccC
Confidence 9999999999998655 5555443333 69999999998
No 129
>KOG1673|consensus
Probab=99.68 E-value=1.7e-16 Score=115.70 Aligned_cols=110 Identities=17% Similarity=0.295 Sum_probs=96.5
Q ss_pred eeeEE-EEeCCCCc---eeEeee-ccCCCcccCcceeeeeEEEEEecCCCee----eeCCCchhchhhhhhhhcCCcEEE
Q psy15036 42 FNFGT-QLGRRGIP---LLKHLK-YLGTGTHGKTVGIVFPAISVTYSIGPRY----FRFPLVSRFLSLTTGLYRGTMGFL 112 (179)
Q Consensus 42 ~~~Ki-vlG~~gvG---~~~~~~-~~~~~~~~~Ti~~~~~~k~v~~~~~~~i----wDt~G~e~~~~~~~~~~~~~~~vi 112 (179)
..+|| ++||+.+| ++..++ +.+.+++..|.|+.|..|.+.+. +..+ ||..|++++..+.+.-++++-+++
T Consensus 19 Vslkv~llGD~qiGKTs~mvkYV~~~~de~~~q~~GvN~mdkt~~i~-~t~IsfSIwdlgG~~~~~n~lPiac~dsvaIl 97 (205)
T KOG1673|consen 19 VSLKVGLLGDAQIGKTSLMVKYVQNEYDEEYTQTLGVNFMDKTVSIR-GTDISFSIWDLGGQREFINMLPIACKDSVAIL 97 (205)
T ss_pred eEEEEEeecccccCceeeehhhhcchhHHHHHHHhCccceeeEEEec-ceEEEEEEEecCCcHhhhccCceeecCcEEEE
Confidence 57899 59999999 444444 55678899999999999999999 8887 999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcC
Q psy15036 113 LIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQ 159 (179)
Q Consensus 113 lvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~ 159 (179)
++||++++++++.+..|+.+.+...... ..||||+|.|+-
T Consensus 98 FmFDLt~r~TLnSi~~WY~QAr~~NktA-------iPilvGTKyD~f 137 (205)
T KOG1673|consen 98 FMFDLTRRSTLNSIKEWYRQARGLNKTA-------IPILVGTKYDLF 137 (205)
T ss_pred EEEecCchHHHHHHHHHHHHHhccCCcc-------ceEEeccchHhh
Confidence 9999999999999999999999877663 556889999973
No 130
>KOG0070|consensus
Probab=99.68 E-value=1.6e-15 Score=113.40 Aligned_cols=120 Identities=13% Similarity=0.171 Sum_probs=96.7
Q ss_pred eeeEEE-EeCCCCc---eeEeeeccCCCcccCcceeeeeEEEEEecCCCee--eeCCCchhchhhhhhhhcCCcEEEEEE
Q psy15036 42 FNFGTQ-LGRRGIP---LLKHLKYLGTGTHGKTVGIVFPAISVTYSIGPRY--FRFPLVSRFLSLTTGLYRGTMGFLLIF 115 (179)
Q Consensus 42 ~~~Kiv-lG~~gvG---~~~~~~~~~~~~~~~Ti~~~~~~k~v~~~~~~~i--wDt~G~e~~~~~~~~~~~~~~~vilvy 115 (179)
...+|| +|-.+.| +++++.....-...||+| |....+.+. +.++ ||.+||++++.+++.||++++++|+|.
T Consensus 16 ~e~~IlmlGLD~AGKTTILykLk~~E~vttvPTiG--fnVE~v~yk-n~~f~vWDvGGq~k~R~lW~~Y~~~t~~lIfVv 92 (181)
T KOG0070|consen 16 KEMRILMVGLDAAGKTTILYKLKLGEIVTTVPTIG--FNVETVEYK-NISFTVWDVGGQEKLRPLWKHYFQNTQGLIFVV 92 (181)
T ss_pred ceEEEEEEeccCCCceeeeEeeccCCcccCCCccc--cceeEEEEc-ceEEEEEecCCCcccccchhhhccCCcEEEEEE
Confidence 368898 9999999 777877443344499999 445678888 8887 999999999999999999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCCCCCCCHHHHHH
Q psy15036 116 DVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQRCREVVTPDQIM 171 (179)
Q Consensus 116 Dit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~~r~Vs~~e~~~ 171 (179)
|.++++-+...+.-+..+...... ...|+++.+||.|+.+ ..+..|..+
T Consensus 93 DS~Dr~Ri~eak~eL~~~l~~~~l-----~~~~llv~aNKqD~~~--als~~ei~~ 141 (181)
T KOG0070|consen 93 DSSDRERIEEAKEELHRMLAEPEL-----RNAPLLVFANKQDLPG--ALSAAEITN 141 (181)
T ss_pred eCCcHHHHHHHHHHHHHHHcCccc-----CCceEEEEechhhccc--cCCHHHHHh
Confidence 999999999998777777655442 1268888899999986 566555443
No 131
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=99.66 E-value=9.4e-16 Score=115.81 Aligned_cols=122 Identities=14% Similarity=0.171 Sum_probs=98.2
Q ss_pred ceeeEEE-EeCCCCc---eeEeeeccCCCcccCcceeeeeEEEEEecCCCee--eeCCCchhchhhhhhhhcCCcEEEEE
Q psy15036 41 SFNFGTQ-LGRRGIP---LLKHLKYLGTGTHGKTVGIVFPAISVTYSIGPRY--FRFPLVSRFLSLTTGLYRGTMGFLLI 114 (179)
Q Consensus 41 ~~~~Kiv-lG~~gvG---~~~~~~~~~~~~~~~Ti~~~~~~k~v~~~~~~~i--wDt~G~e~~~~~~~~~~~~~~~vilv 114 (179)
...+||+ +|..++| +++++.......+.||+|.+. ..+.+. +..+ ||.+|+++++.+++.||++++++|+|
T Consensus 12 ~~~~~ililGl~~sGKTtll~~l~~~~~~~~~pT~g~~~--~~i~~~-~~~~~~~d~gG~~~~~~~w~~y~~~~~~iIfV 88 (175)
T PF00025_consen 12 KKEIKILILGLDGSGKTTLLNRLKNGEISETIPTIGFNI--EEIKYK-GYSLTIWDLGGQESFRPLWKSYFQNADGIIFV 88 (175)
T ss_dssp TSEEEEEEEESTTSSHHHHHHHHHSSSEEEEEEESSEEE--EEEEET-TEEEEEEEESSSGGGGGGGGGGHTTESEEEEE
T ss_pred CcEEEEEEECCCccchHHHHHHhhhccccccCccccccc--ceeeeC-cEEEEEEeccccccccccceeeccccceeEEE
Confidence 4579998 9999999 666666544456889998654 567777 7777 99999999999999999999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCCCCCCCHHHHHHH
Q psy15036 115 FDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQRCREVVTPDQIMF 172 (179)
Q Consensus 115 yDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~~r~Vs~~e~~~~ 172 (179)
.|.++++.+.+....+..+....... ..|+++++||.|+.+ .++.++....
T Consensus 89 vDssd~~~l~e~~~~L~~ll~~~~~~-----~~piLIl~NK~D~~~--~~~~~~i~~~ 139 (175)
T PF00025_consen 89 VDSSDPERLQEAKEELKELLNDPELK-----DIPILILANKQDLPD--AMSEEEIKEY 139 (175)
T ss_dssp EETTGGGGHHHHHHHHHHHHTSGGGT-----TSEEEEEEESTTSTT--SSTHHHHHHH
T ss_pred Eecccceeecccccchhhhcchhhcc-----cceEEEEeccccccC--cchhhHHHhh
Confidence 99999999999988888876542211 168888899999875 6777776654
No 132
>KOG0073|consensus
Probab=99.66 E-value=1.4e-15 Score=111.63 Aligned_cols=119 Identities=16% Similarity=0.163 Sum_probs=97.5
Q ss_pred ceeeEEE-EeCCCCc---eeEeeeccCCCcccCcceeeeeEEEEEecCCCee--eeCCCchhchhhhhhhhcCCcEEEEE
Q psy15036 41 SFNFGTQ-LGRRGIP---LLKHLKYLGTGTHGKTVGIVFPAISVTYSIGPRY--FRFPLVSRFLSLTTGLYRGTMGFLLI 114 (179)
Q Consensus 41 ~~~~Kiv-lG~~gvG---~~~~~~~~~~~~~~~Ti~~~~~~k~v~~~~~~~i--wDt~G~e~~~~~~~~~~~~~~~vilv 114 (179)
+..++|+ +|..+.| +..++.+...+...||.| |..+++.++ +..+ ||.+||..+++.+++||..+||+|.|
T Consensus 14 erE~riLiLGLdNsGKTti~~kl~~~~~~~i~pt~g--f~Iktl~~~-~~~L~iwDvGGq~~lr~~W~nYfestdglIwv 90 (185)
T KOG0073|consen 14 EREVRILILGLDNSGKTTIVKKLLGEDTDTISPTLG--FQIKTLEYK-GYTLNIWDVGGQKTLRSYWKNYFESTDGLIWV 90 (185)
T ss_pred hheeEEEEEecCCCCchhHHHHhcCCCccccCCccc--eeeEEEEec-ceEEEEEEcCCcchhHHHHHHhhhccCeEEEE
Confidence 3489998 9999999 777888888889999999 556788888 8887 99999999999999999999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHHHh-CCccCccccceEEEEeeCCCcCCCCCCCHHHHH
Q psy15036 115 FDVTNENSFKDVEKWLLQIKVMD-GALFTHFELQIVFMRGCLELLQRCREVVTPDQI 170 (179)
Q Consensus 115 yDit~~~Sf~~l~~w~~~i~~~~-~~~~~~~~~~~iilvGnK~Dl~~~r~Vs~~e~~ 170 (179)
+|.+++..|+....-+..+.... -.. .|+++++||.|+.. +++.++..
T Consensus 91 vDssD~~r~~e~~~~L~~lL~eerlaG------~~~Lvlank~dl~~--~l~~~~i~ 139 (185)
T KOG0073|consen 91 VDSSDRMRMQECKQELTELLVEERLAG------APLLVLANKQDLPG--ALSLEEIS 139 (185)
T ss_pred EECchHHHHHHHHHHHHHHHhhhhhcC------CceEEEEecCcCcc--ccCHHHHH
Confidence 99999999999977766664321 111 36778899999985 56655543
No 133
>KOG3883|consensus
Probab=99.65 E-value=9e-16 Score=111.64 Aligned_cols=128 Identities=15% Similarity=0.102 Sum_probs=99.9
Q ss_pred eeEEE-EeCCCCc---eeEeee-c--cCCCcccCcceeeeeEEEEEecCCCe--e--eeCCCchhc-hhhhhhhhcCCcE
Q psy15036 43 NFGTQ-LGRRGIP---LLKHLK-Y--LGTGTHGKTVGIVFPAISVTYSIGPR--Y--FRFPLVSRF-LSLTTGLYRGTMG 110 (179)
Q Consensus 43 ~~Kiv-lG~~gvG---~~~~~~-~--~~~~~~~~Ti~~~~~~k~v~~~~~~~--i--wDt~G~e~~-~~~~~~~~~~~~~ 110 (179)
-.||| +|-.+|| ++..+. + ....++.||++ +.+...+..+.|-+ + +||+|-..+ ..+-+.|+.-+|+
T Consensus 9 ~~kVvVcG~k~VGKTaileQl~yg~~~~~~e~~pTiE-DiY~~svet~rgarE~l~lyDTaGlq~~~~eLprhy~q~aDa 87 (198)
T KOG3883|consen 9 VCKVVVCGMKSVGKTAILEQLLYGNHVPGTELHPTIE-DIYVASVETDRGAREQLRLYDTAGLQGGQQELPRHYFQFADA 87 (198)
T ss_pred ceEEEEECCccccHHHHHHHHHhccCCCCCccccchh-hheeEeeecCCChhheEEEeecccccCchhhhhHhHhccCce
Confidence 47898 9999999 555544 2 23567889998 45555554441211 2 999998777 6788999999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCCCCCCCHHHHHHHHhhh
Q psy15036 111 FLLIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQRCREVVTPDQIMFGSTQ 176 (179)
Q Consensus 111 vilvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~~r~Vs~~e~~~~a~~~ 176 (179)
++||||..|++||+.+....++|.+....+ ..||+++|||+|+.+.|+|..+-|..||++.
T Consensus 88 fVLVYs~~d~eSf~rv~llKk~Idk~KdKK-----EvpiVVLaN~rdr~~p~~vd~d~A~~Wa~rE 148 (198)
T KOG3883|consen 88 FVLVYSPMDPESFQRVELLKKEIDKHKDKK-----EVPIVVLANKRDRAEPREVDMDVAQIWAKRE 148 (198)
T ss_pred EEEEecCCCHHHHHHHHHHHHHHhhccccc-----cccEEEEechhhcccchhcCHHHHHHHHhhh
Confidence 999999999999999887777777655443 2688888999999999999999999999763
No 134
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=99.62 E-value=2.6e-15 Score=109.37 Aligned_cols=108 Identities=15% Similarity=0.122 Sum_probs=86.3
Q ss_pred EE-EeCCCCc---eeEeee-ccCCCcccCcceeeeeEEEEEecCCCee--eeCCCchhchhhhhhhhcCCcEEEEEEeCC
Q psy15036 46 TQ-LGRRGIP---LLKHLK-YLGTGTHGKTVGIVFPAISVTYSIGPRY--FRFPLVSRFLSLTTGLYRGTMGFLLIFDVT 118 (179)
Q Consensus 46 iv-lG~~gvG---~~~~~~-~~~~~~~~~Ti~~~~~~k~v~~~~~~~i--wDt~G~e~~~~~~~~~~~~~~~vilvyDit 118 (179)
|+ +|.+|+| +++.+. ..+..++.||++.++. .+..+ +..+ ||++|++++..++..+++.++++++|+|++
T Consensus 2 i~i~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~--~~~~~-~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~ 78 (159)
T cd04159 2 ITLVGLQNSGKTTLVNVIAGGQFSEDTIPTVGFNMR--KVTKG-NVTLKVWDLGGQPRFRSMWERYCRGVNAIVYVVDAA 78 (159)
T ss_pred EEEEcCCCCCHHHHHHHHccCCCCcCccCCCCcceE--EEEEC-CEEEEEEECCCCHhHHHHHHHHHhcCCEEEEEEECC
Confidence 55 9999999 666665 4577888899987764 34455 5444 999999999999999999999999999999
Q ss_pred ChhhHHHHHHHHHHHHHHhC-CccCccccceEEEEeeCCCcCCCC
Q psy15036 119 NENSFKDVEKWLLQIKVMDG-ALFTHFELQIVFMRGCLELLQRCR 162 (179)
Q Consensus 119 ~~~Sf~~l~~w~~~i~~~~~-~~~~~~~~~~iilvGnK~Dl~~~r 162 (179)
++++|..+..|+..+.+... .. .|+++|+||+|+.+.+
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~------~p~iiv~nK~D~~~~~ 117 (159)
T cd04159 79 DRTALEAAKNELHDLLEKPSLEG------IPLLVLGNKNDLPGAL 117 (159)
T ss_pred CHHHHHHHHHHHHHHHcChhhcC------CCEEEEEeCccccCCc
Confidence 99999999888887765321 22 5888999999987643
No 135
>KOG0071|consensus
Probab=99.60 E-value=1.4e-14 Score=104.02 Aligned_cols=120 Identities=19% Similarity=0.217 Sum_probs=99.0
Q ss_pred eeEEE-EeCCCCc---eeEeeeccCCCcccCcceeeeeEEEEEecCCCee--eeCCCchhchhhhhhhhcCCcEEEEEEe
Q psy15036 43 NFGTQ-LGRRGIP---LLKHLKYLGTGTHGKTVGIVFPAISVTYSIGPRY--FRFPLVSRFLSLTTGLYRGTMGFLLIFD 116 (179)
Q Consensus 43 ~~Kiv-lG~~gvG---~~~~~~~~~~~~~~~Ti~~~~~~k~v~~~~~~~i--wDt~G~e~~~~~~~~~~~~~~~vilvyD 116 (179)
.++|+ +|-.+.| ++.+++...+....||+| |..+.+++. +..+ ||.+||++.+.+++.||.++.++|+|.|
T Consensus 17 E~~ilmlGLd~aGKTtiLyKLkl~~~~~~ipTvG--FnvetVtyk-N~kfNvwdvGGqd~iRplWrhYy~gtqglIFV~D 93 (180)
T KOG0071|consen 17 EMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVG--FNVETVTYK-NVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVD 93 (180)
T ss_pred cceEEEEecccCCceehhhHHhcCCCcccccccc--eeEEEEEee-eeEEeeeeccCchhhhHHHHhhccCCceEEEEEe
Confidence 57898 9999999 788888777788889999 556788888 8887 9999999999999999999999999999
Q ss_pred CCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCCCCCCCHHHHHHH
Q psy15036 117 VTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQRCREVVTPDQIMF 172 (179)
Q Consensus 117 it~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~~r~Vs~~e~~~~ 172 (179)
..+++..++.+.-+..+.....-. ..++++.+||-|+.+ ..+..|++++
T Consensus 94 sa~~dr~eeAr~ELh~ii~~~em~-----~~~~LvlANkQDlp~--A~~pqei~d~ 142 (180)
T KOG0071|consen 94 SADRDRIEEARNELHRIINDREMR-----DAIILILANKQDLPD--AMKPQEIQDK 142 (180)
T ss_pred ccchhhHHHHHHHHHHHhCCHhhh-----cceEEEEecCccccc--ccCHHHHHHH
Confidence 999988888876666665433221 157777799999987 6777777665
No 136
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=99.59 E-value=1.9e-14 Score=107.38 Aligned_cols=109 Identities=14% Similarity=0.098 Sum_probs=87.3
Q ss_pred eeEEE-EeCCCCc---eeEeeeccCCCcccCcceeeeeEEEEEecCCCee--eeCCCchhchhhhhhhhcCCcEEEEEEe
Q psy15036 43 NFGTQ-LGRRGIP---LLKHLKYLGTGTHGKTVGIVFPAISVTYSIGPRY--FRFPLVSRFLSLTTGLYRGTMGFLLIFD 116 (179)
Q Consensus 43 ~~Kiv-lG~~gvG---~~~~~~~~~~~~~~~Ti~~~~~~k~v~~~~~~~i--wDt~G~e~~~~~~~~~~~~~~~vilvyD 116 (179)
.+||+ +|.+|+| ++..+.+.....+.||.|.++ ..+..+ +..+ ||++|+.++......++++++++++|||
T Consensus 14 ~~~v~i~G~~g~GKStLl~~l~~~~~~~~~~t~g~~~--~~i~~~-~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~v~D 90 (173)
T cd04155 14 EPRILILGLDNAGKTTILKQLASEDISHITPTQGFNI--KTVQSD-GFKLNVWDIGGQRAIRPYWRNYFENTDCLIYVID 90 (173)
T ss_pred ccEEEEEccCCCCHHHHHHHHhcCCCcccCCCCCcce--EEEEEC-CEEEEEEECCCCHHHHHHHHHHhcCCCEEEEEEe
Confidence 68897 9999999 666666544455778888544 456666 7666 9999999998888999999999999999
Q ss_pred CCChhhHHHHHHHHHHHHHHh-CCccCccccceEEEEeeCCCcCC
Q psy15036 117 VTNENSFKDVEKWLLQIKVMD-GALFTHFELQIVFMRGCLELLQR 160 (179)
Q Consensus 117 it~~~Sf~~l~~w~~~i~~~~-~~~~~~~~~~~iilvGnK~Dl~~ 160 (179)
+++..+|.....|+..+.+.. ... .|+++++||+|+.+
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~------~p~ivv~nK~D~~~ 129 (173)
T cd04155 91 SADKKRLEEAGAELVELLEEEKLAG------VPVLVFANKQDLAT 129 (173)
T ss_pred CCCHHHHHHHHHHHHHHHhChhhcC------CCEEEEEECCCCcc
Confidence 999999999988887775432 222 68889999999865
No 137
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=99.58 E-value=4.5e-15 Score=107.57 Aligned_cols=108 Identities=14% Similarity=-0.021 Sum_probs=76.6
Q ss_pred EEE-EeCCCCc---eeEeeeccCCCcccCcceeeeeEEEEEecCCCeeeeCCCc-----hhchhhhhhhhcCCcEEEEEE
Q psy15036 45 GTQ-LGRRGIP---LLKHLKYLGTGTHGKTVGIVFPAISVTYSIGPRYFRFPLV-----SRFLSLTTGLYRGTMGFLLIF 115 (179)
Q Consensus 45 Kiv-lG~~gvG---~~~~~~~~~~~~~~~Ti~~~~~~k~v~~~~~~~iwDt~G~-----e~~~~~~~~~~~~~~~vilvy 115 (179)
||+ +|+++|| ++.++.+.. ..+.+|++.++. + .+|||+|+ +.|+.+.+ .++++|++++||
T Consensus 2 kv~liG~~~vGKSsL~~~l~~~~-~~~~~t~~~~~~--------~-~~iDt~G~~~~~~~~~~~~~~-~~~~ad~vilv~ 70 (142)
T TIGR02528 2 RIMFIGSVGCGKTTLTQALQGEE-ILYKKTQAVEYN--------D-GAIDTPGEYVENRRLYSALIV-TAADADVIALVQ 70 (142)
T ss_pred eEEEECCCCCCHHHHHHHHcCCc-cccccceeEEEc--------C-eeecCchhhhhhHHHHHHHHH-HhhcCCEEEEEe
Confidence 787 9999999 666665432 235667665442 2 34899998 34555544 589999999999
Q ss_pred eCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCCCCCCCHHHHHHHHhhhC
Q psy15036 116 DVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQRCREVVTPDQIMFGSTQS 177 (179)
Q Consensus 116 Dit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~~r~Vs~~e~~~~a~~~~ 177 (179)
|+++++||.. ..|.+.. . .|+++|+||+||.+ +.+..+++++++++.+
T Consensus 71 d~~~~~s~~~-~~~~~~~-----~-------~p~ilv~NK~Dl~~-~~~~~~~~~~~~~~~~ 118 (142)
T TIGR02528 71 SATDPESRFP-PGFASIF-----V-------KPVIGLVTKIDLAE-ADVDIERAKELLETAG 118 (142)
T ss_pred cCCCCCcCCC-hhHHHhc-----c-------CCeEEEEEeeccCC-cccCHHHHHHHHHHcC
Confidence 9999999876 3454321 1 26778899999965 5667788888887643
No 138
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=99.56 E-value=3.1e-14 Score=106.80 Aligned_cols=118 Identities=14% Similarity=0.068 Sum_probs=79.3
Q ss_pred EEE-EeCCCCc---eeEeeec--------cCCCcccCcc------eeeeeEEEEEe-----cCCCee----eeCCCchhc
Q psy15036 45 GTQ-LGRRGIP---LLKHLKY--------LGTGTHGKTV------GIVFPAISVTY-----SIGPRY----FRFPLVSRF 97 (179)
Q Consensus 45 Kiv-lG~~gvG---~~~~~~~--------~~~~~~~~Ti------~~~~~~k~v~~-----~~~~~i----wDt~G~e~~ 97 (179)
.|. +|+.+|| ++.++.. .+...+.+|. |.++..+.+.+ + +..+ |||+|+++|
T Consensus 2 ni~~vG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~~~~~~~~~~~~~~-~~~~~~~l~Dt~G~~~~ 80 (179)
T cd01890 2 NFSIIAHIDHGKSTLADRLLELTGTVSKREMKEQVLDSMDLERERGITIKAQTVRLNYKAKD-GQEYLLNLIDTPGHVDF 80 (179)
T ss_pred cEEEEeecCCCHHHHHHHHHHHhCCCCcCCCceEeccCChhHHHCCCeEecceEEEEEecCC-CCcEEEEEEECCCChhh
Confidence 355 9999999 5554442 1223344433 44554443333 3 3443 999999999
Q ss_pred hhhhhhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCCCCCCCHHHHHHHHhh
Q psy15036 98 LSLTTGLYRGTMGFLLIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQRCREVVTPDQIMFGST 175 (179)
Q Consensus 98 ~~~~~~~~~~~~~vilvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~~r~Vs~~e~~~~a~~ 175 (179)
......+++++|++|+|||.++..+++.+..|..... .+ .|+++|+||+|+.+.+ ..+...++++.
T Consensus 81 ~~~~~~~~~~ad~~i~v~D~~~~~~~~~~~~~~~~~~----~~------~~iiiv~NK~Dl~~~~--~~~~~~~~~~~ 146 (179)
T cd01890 81 SYEVSRSLAACEGALLLVDATQGVEAQTLANFYLALE----NN------LEIIPVINKIDLPSAD--PERVKQQIEDV 146 (179)
T ss_pred HHHHHHHHHhcCeEEEEEECCCCccHhhHHHHHHHHH----cC------CCEEEEEECCCCCcCC--HHHHHHHHHHH
Confidence 9999999999999999999999888888777754321 22 4788999999996532 22333455544
No 139
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=99.53 E-value=1.2e-13 Score=99.87 Aligned_cols=122 Identities=13% Similarity=0.122 Sum_probs=94.2
Q ss_pred eeEEE-EeCCCCc---eeEeee-ccCCCcccCcceeeeeEEEEEecCCC--ee--eeCCCchhchhhhhhhhcCCcEEEE
Q psy15036 43 NFGTQ-LGRRGIP---LLKHLK-YLGTGTHGKTVGIVFPAISVTYSIGP--RY--FRFPLVSRFLSLTTGLYRGTMGFLL 113 (179)
Q Consensus 43 ~~Kiv-lG~~gvG---~~~~~~-~~~~~~~~~Ti~~~~~~k~v~~~~~~--~i--wDt~G~e~~~~~~~~~~~~~~~vil 113 (179)
.+||+ +|..|+| ++..+. ..+...+.++++.++....+.++ +. .+ ||++|++++..+...+++.+++++.
T Consensus 1 ~~ki~~~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~ 79 (161)
T TIGR00231 1 EIKIVIVGDPNVGKSTLLNRLLGNKFITEYKPGTTRNYVTTVIEED-GKTYKFNLLDTAGQEDYRAIRRLYYRAVESSLR 79 (161)
T ss_pred CeEEEEECCCCCCHHHHHHHHhCCCCcCcCCCCceeeeeEEEEEEC-CEEEEEEEEECCCcccchHHHHHHHhhhhEEEE
Confidence 37897 9999999 555444 33566777888888776667777 63 34 9999999999999999999999999
Q ss_pred EEeCCCh-hhHHHHH-HHHHHHHHHhCCccCccccceEEEEeeCCCcCCCCCCCHHHHHHH
Q psy15036 114 IFDVTNE-NSFKDVE-KWLLQIKVMDGALFTHFELQIVFMRGCLELLQRCREVVTPDQIMF 172 (179)
Q Consensus 114 vyDit~~-~Sf~~l~-~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~~r~Vs~~e~~~~ 172 (179)
++|+... .++.... .|...+.+..... .|+++++||+|+...+ +..+....+
T Consensus 80 ~~d~~~~v~~~~~~~~~~~~~~~~~~~~~------~p~ivv~nK~D~~~~~-~~~~~~~~~ 133 (161)
T TIGR00231 80 VFDIVILVLDVEEILEKQTKEIIHHAESN------VPIILVGNKIDLRDAK-LKTHVAFLF 133 (161)
T ss_pred EEEEeeeehhhhhHhHHHHHHHHHhcccC------CcEEEEEEcccCCcch-hhHHHHHHH
Confidence 9999998 8888875 8888887765433 6889999999997644 343333333
No 140
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=99.49 E-value=1.6e-13 Score=100.90 Aligned_cols=104 Identities=14% Similarity=0.069 Sum_probs=67.8
Q ss_pred EE-EeCCCCc---eeEeeec----cCCCcccCcceeeeeEEEEEecCCCee--eeCCCchhchhhhhhhhcCCcEEEEEE
Q psy15036 46 TQ-LGRRGIP---LLKHLKY----LGTGTHGKTVGIVFPAISVTYSIGPRY--FRFPLVSRFLSLTTGLYRGTMGFLLIF 115 (179)
Q Consensus 46 iv-lG~~gvG---~~~~~~~----~~~~~~~~Ti~~~~~~k~v~~~~~~~i--wDt~G~e~~~~~~~~~~~~~~~vilvy 115 (179)
|. +|+.+|| ++..+.+ .+..++.++..++.....+.+.++..+ |||+|+++|......+++++|++++||
T Consensus 3 i~i~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~~~~~~~ad~ii~V~ 82 (164)
T cd04171 3 IGTAGHIDHGKTTLIKALTGIETDRLPEEKKRGITIDLGFAYLDLPSGKRLGFIDVPGHEKFIKNMLAGAGGIDLVLLVV 82 (164)
T ss_pred EEEEecCCCCHHHHHHHHhCcccccchhhhccCceEEeeeEEEEecCCcEEEEEECCChHHHHHHHHhhhhcCCEEEEEE
Confidence 44 9999999 5555542 233333333333333234444314445 999999999877777899999999999
Q ss_pred eCCC---hhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCCC
Q psy15036 116 DVTN---ENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQRC 161 (179)
Q Consensus 116 Dit~---~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~~ 161 (179)
|.++ +++++.+.. +.. ... +|+++|+||+|+.++
T Consensus 83 d~~~~~~~~~~~~~~~----~~~-~~~-------~~~ilv~NK~Dl~~~ 119 (164)
T cd04171 83 AADEGIMPQTREHLEI----LEL-LGI-------KRGLVVLTKADLVDE 119 (164)
T ss_pred ECCCCccHhHHHHHHH----HHH-hCC-------CcEEEEEECccccCH
Confidence 9987 555555432 221 122 378899999999653
No 141
>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ
Probab=99.47 E-value=4.7e-13 Score=103.45 Aligned_cols=109 Identities=15% Similarity=0.121 Sum_probs=75.9
Q ss_pred EEE-EeCCCCc---eeEeee-ccCCCcccCcceeeeeEEEEEe-cCCCee--eeCCCchhchhhhhhhhcCC-cEEEEEE
Q psy15036 45 GTQ-LGRRGIP---LLKHLK-YLGTGTHGKTVGIVFPAISVTY-SIGPRY--FRFPLVSRFLSLTTGLYRGT-MGFLLIF 115 (179)
Q Consensus 45 Kiv-lG~~gvG---~~~~~~-~~~~~~~~~Ti~~~~~~k~v~~-~~~~~i--wDt~G~e~~~~~~~~~~~~~-~~vilvy 115 (179)
.|+ +|++++| ++.++. ..+...+.++ ........... +.+..+ ||++|+++++.....+++++ +++|+|+
T Consensus 2 ~vll~G~~~sGKTsL~~~l~~~~~~~t~~s~-~~~~~~~~~~~~~~~~~~~l~D~pG~~~~~~~~~~~~~~~~~~vV~Vv 80 (203)
T cd04105 2 TVLLLGPSDSGKTALFTKLTTGKYRSTVTSI-EPNVATFILNSEGKGKKFRLVDVPGHPKLRDKLLETLKNSAKGIVFVV 80 (203)
T ss_pred eEEEEcCCCCCHHHHHHHHhcCCCCCccCcE-eecceEEEeecCCCCceEEEEECCCCHHHHHHHHHHHhccCCEEEEEE
Confidence 466 9999999 555554 3344444433 22222111211 103334 99999999999989999999 9999999
Q ss_pred eCCCh-hhHHHHHHHHHHHHHHhC---CccCccccceEEEEeeCCCcCC
Q psy15036 116 DVTNE-NSFKDVEKWLLQIKVMDG---ALFTHFELQIVFMRGCLELLQR 160 (179)
Q Consensus 116 Dit~~-~Sf~~l~~w~~~i~~~~~---~~~~~~~~~~iilvGnK~Dl~~ 160 (179)
|.++. +++..+..|+..+..... .. +|+++++||+|+..
T Consensus 81 D~~~~~~~~~~~~~~l~~il~~~~~~~~~------~pvliv~NK~Dl~~ 123 (203)
T cd04105 81 DSATFQKNLKDVAEFLYDILTDLEKVKNK------IPVLIACNKQDLFT 123 (203)
T ss_pred ECccchhHHHHHHHHHHHHHHHHhhccCC------CCEEEEecchhhcc
Confidence 99998 789988888777643321 22 68899999999965
No 142
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=99.47 E-value=1.7e-13 Score=104.71 Aligned_cols=119 Identities=12% Similarity=-0.015 Sum_probs=76.9
Q ss_pred EEE-EeCCCCc---eeEeee---ccCCCcc------------cCcceeeeeEEEEEecC-CCee--eeCCCchhchhhhh
Q psy15036 45 GTQ-LGRRGIP---LLKHLK---YLGTGTH------------GKTVGIVFPAISVTYSI-GPRY--FRFPLVSRFLSLTT 102 (179)
Q Consensus 45 Kiv-lG~~gvG---~~~~~~---~~~~~~~------------~~Ti~~~~~~k~v~~~~-~~~i--wDt~G~e~~~~~~~ 102 (179)
+|+ +|+.+|| ++..+. +.+...+ .++.|.++..+...+.. +..+ |||+|+++|..+..
T Consensus 4 ~i~ivG~~~~GKTsL~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~ 83 (194)
T cd01891 4 NIAIIAHVDHGKTTLVDALLKQSGTFRENEEVEERVMDSNDLERERGITILAKNTAVTYKDTKINIVDTPGHADFGGEVE 83 (194)
T ss_pred EEEEEecCCCCHHHHHHHHHHHcCCCCccCcccccccccchhHHhcccccccceeEEEECCEEEEEEECCCcHHHHHHHH
Confidence 566 9999999 444444 2333322 23455555444443430 3334 99999999999999
Q ss_pred hhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCCCCC-CCHHHHHHHH
Q psy15036 103 GLYRGTMGFLLIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQRCRE-VVTPDQIMFG 173 (179)
Q Consensus 103 ~~~~~~~~vilvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~~r~-Vs~~e~~~~a 173 (179)
.+++++|++++|||.++. .+.....|+..+.. .. .|+++|+||+|+.+.+. ...+++.++.
T Consensus 84 ~~~~~~d~~ilV~d~~~~-~~~~~~~~~~~~~~---~~------~p~iiv~NK~Dl~~~~~~~~~~~~~~~~ 145 (194)
T cd01891 84 RVLSMVDGVLLLVDASEG-PMPQTRFVLKKALE---LG------LKPIVVINKIDRPDARPEEVVDEVFDLF 145 (194)
T ss_pred HHHHhcCEEEEEEECCCC-ccHHHHHHHHHHHH---cC------CCEEEEEECCCCCCCCHHHHHHHHHHHH
Confidence 999999999999999874 34444555554433 22 46788899999965443 2234555544
No 143
>KOG0075|consensus
Probab=99.46 E-value=7.7e-13 Score=95.80 Aligned_cols=108 Identities=15% Similarity=0.095 Sum_probs=83.2
Q ss_pred eEEE-EeCCCCc---eeEeee-ccCCCcccCcceeeeeEEEEEecCCCee--eeCCCchhchhhhhhhhcCCcEEEEEEe
Q psy15036 44 FGTQ-LGRRGIP---LLKHLK-YLGTGTHGKTVGIVFPAISVTYSIGPRY--FRFPLVSRFLSLTTGLYRGTMGFLLIFD 116 (179)
Q Consensus 44 ~Kiv-lG~~gvG---~~~~~~-~~~~~~~~~Ti~~~~~~k~v~~~~~~~i--wDt~G~e~~~~~~~~~~~~~~~vilvyD 116 (179)
..+. +|-...| +...+. +.+.+...||+|... +.++-+ +-.+ ||.+||.+|++++..|+|+++++++|.|
T Consensus 21 mel~lvGLq~sGKtt~Vn~ia~g~~~edmiptvGfnm--rk~tkg-nvtiklwD~gGq~rfrsmWerycR~v~aivY~VD 97 (186)
T KOG0075|consen 21 MELSLVGLQNSGKTTLVNVIARGQYLEDMIPTVGFNM--RKVTKG-NVTIKLWDLGGQPRFRSMWERYCRGVSAIVYVVD 97 (186)
T ss_pred eeEEEEeeccCCcceEEEEEeeccchhhhccccccee--EEeccC-ceEEEEEecCCCccHHHHHHHHhhcCcEEEEEee
Confidence 4454 8888888 444444 678899999999544 455545 4445 9999999999999999999999999999
Q ss_pred CCChhhHHHHHHHHHHHHHHhC-CccCccccceEEEEeeCCCcCC
Q psy15036 117 VTNENSFKDVEKWLLQIKVMDG-ALFTHFELQIVFMRGCLELLQR 160 (179)
Q Consensus 117 it~~~Sf~~l~~w~~~i~~~~~-~~~~~~~~~~iilvGnK~Dl~~ 160 (179)
..+++.....+.-+..+..... .. .|+++.|||.|+.+
T Consensus 98 aad~~k~~~sr~EL~~LL~k~~l~g------ip~LVLGnK~d~~~ 136 (186)
T KOG0075|consen 98 AADPDKLEASRSELHDLLDKPSLTG------IPLLVLGNKIDLPG 136 (186)
T ss_pred cCCcccchhhHHHHHHHhcchhhcC------CcEEEecccccCcc
Confidence 9999999888766665543332 23 57788899999865
No 144
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=99.45 E-value=4e-13 Score=99.70 Aligned_cols=121 Identities=12% Similarity=0.002 Sum_probs=76.8
Q ss_pred EE-EeCCCCc---eeEeeeccCC--Cc-ccCcceeeeeEEEEEecCCC-ee--eeCCCch----hchhhhhhhhc---CC
Q psy15036 46 TQ-LGRRGIP---LLKHLKYLGT--GT-HGKTVGIVFPAISVTYSIGP-RY--FRFPLVS----RFLSLTTGLYR---GT 108 (179)
Q Consensus 46 iv-lG~~gvG---~~~~~~~~~~--~~-~~~Ti~~~~~~k~v~~~~~~-~i--wDt~G~e----~~~~~~~~~~~---~~ 108 (179)
|+ +|..++| +++.+.+... .. ..+|.... ...+.++ +. .+ |||+|+. .++.+...+++ .+
T Consensus 3 v~ivG~~~~GKStl~~~l~~~~~~v~~~~~~t~~~~--~~~~~~~-~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~ 79 (170)
T cd01898 3 VGLVGLPNAGKSTLLSAISNAKPKIADYPFTTLVPN--LGVVRVD-DGRSFVVADIPGLIEGASEGKGLGHRFLRHIERT 79 (170)
T ss_pred eEEECCCCCCHHHHHHHHhcCCccccCCCccccCCc--ceEEEcC-CCCeEEEEecCcccCcccccCCchHHHHHHHHhC
Confidence 65 9999999 6655553211 11 11222211 1233455 54 55 9999963 33334455544 59
Q ss_pred cEEEEEEeCCCh-hhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCCCCCCCHHHHHHHHh
Q psy15036 109 MGFLLIFDVTNE-NSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQRCREVVTPDQIMFGS 174 (179)
Q Consensus 109 ~~vilvyDit~~-~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~~r~Vs~~e~~~~a~ 174 (179)
|++++|+|.+++ ++++++..|++++.+..+.. ...|+++|+||+|+..++.+. +....+..
T Consensus 80 d~vi~v~D~~~~~~~~~~~~~~~~~l~~~~~~~----~~~p~ivv~NK~Dl~~~~~~~-~~~~~~~~ 141 (170)
T cd01898 80 RLLLHVIDLSGDDDPVEDYKTIRNELELYNPEL----LEKPRIVVLNKIDLLDEEELF-ELLKELLK 141 (170)
T ss_pred CEEEEEEecCCCCCHHHHHHHHHHHHHHhCccc----cccccEEEEEchhcCCchhhH-HHHHHHHh
Confidence 999999999999 89999999999998764321 115778999999997655443 33444443
No 145
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=99.40 E-value=1.1e-12 Score=100.79 Aligned_cols=111 Identities=11% Similarity=-0.086 Sum_probs=76.9
Q ss_pred eeeEEE-EeCCCCc---eeEeeeccC---CCcccCcceeeeeEEEEEecCCC-ee--eeCCCchh---------chhhhh
Q psy15036 42 FNFGTQ-LGRRGIP---LLKHLKYLG---TGTHGKTVGIVFPAISVTYSIGP-RY--FRFPLVSR---------FLSLTT 102 (179)
Q Consensus 42 ~~~Kiv-lG~~gvG---~~~~~~~~~---~~~~~~Ti~~~~~~k~v~~~~~~-~i--wDt~G~e~---------~~~~~~ 102 (179)
..++|+ +|..||| +++.+.... ...+.+|+... ...+.+. +. .+ |||+|..+ |....
T Consensus 40 ~~~~I~iiG~~g~GKStLl~~l~~~~~~~~~~~~~t~~~~--~~~~~~~-~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~- 115 (204)
T cd01878 40 GIPTVALVGYTNAGKSTLFNALTGADVYAEDQLFATLDPT--TRRLRLP-DGREVLLTDTVGFIRDLPHQLVEAFRSTL- 115 (204)
T ss_pred CCCeEEEECCCCCCHHHHHHHHhcchhccCCccceeccce--eEEEEec-CCceEEEeCCCccccCCCHHHHHHHHHHH-
Confidence 457887 9999999 555555321 12234455432 3455565 44 55 99999732 22222
Q ss_pred hhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCCCC
Q psy15036 103 GLYRGTMGFLLIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQRCR 162 (179)
Q Consensus 103 ~~~~~~~~vilvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~~r 162 (179)
..++++|++++|+|.+++.++..+..|.+.+......+ .|+++|+||+|+.+..
T Consensus 116 ~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~l~~~~~~~------~~viiV~NK~Dl~~~~ 169 (204)
T cd01878 116 EEVAEADLLLHVVDASDPDYEEQIETVEKVLKELGAED------IPMILVLNKIDLLDDE 169 (204)
T ss_pred HHHhcCCeEEEEEECCCCChhhHHHHHHHHHHHcCcCC------CCEEEEEEccccCChH
Confidence 23678999999999999999999988888887665443 6889999999996543
No 146
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=99.40 E-value=1.7e-12 Score=96.20 Aligned_cols=110 Identities=15% Similarity=0.086 Sum_probs=68.7
Q ss_pred EEE-EeCCCCc---eeEeeecc-CCC-cc-cCcceeeeeEEEEEecCCCee--eeCCCchhc----------hhhhhhhh
Q psy15036 45 GTQ-LGRRGIP---LLKHLKYL-GTG-TH-GKTVGIVFPAISVTYSIGPRY--FRFPLVSRF----------LSLTTGLY 105 (179)
Q Consensus 45 Kiv-lG~~gvG---~~~~~~~~-~~~-~~-~~Ti~~~~~~k~v~~~~~~~i--wDt~G~e~~----------~~~~~~~~ 105 (179)
+|+ +|+++|| ++..+... +.. .+ .+|.+... ..+..+ +..+ |||+|+... ..+. ...
T Consensus 2 ~i~~~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~--~~~~~~-~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~-~~~ 77 (168)
T cd01897 2 TLVIAGYPNVGKSSLVNKLTRAKPEVAPYPFTTKSLFV--GHFDYK-YLRWQVIDTPGLLDRPLEERNTIEMQAIT-ALA 77 (168)
T ss_pred eEEEEcCCCCCHHHHHHHHhcCCCccCCCCCcccceeE--EEEccC-ceEEEEEECCCcCCccccCCchHHHHHHH-HHH
Confidence 576 9999999 55555532 211 11 12333322 233334 4555 999998421 1111 112
Q ss_pred cCCcEEEEEEeCCChhhH--HHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCCCCCCC
Q psy15036 106 RGTMGFLLIFDVTNENSF--KDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQRCREVV 165 (179)
Q Consensus 106 ~~~~~vilvyDit~~~Sf--~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~~r~Vs 165 (179)
..++++++|+|.++++++ +....|++.+.+.... .|+++|+||+|+.+.+.+.
T Consensus 78 ~~~d~~l~v~d~~~~~~~~~~~~~~~~~~l~~~~~~-------~pvilv~NK~Dl~~~~~~~ 132 (168)
T cd01897 78 HLRAAVLFLFDPSETCGYSLEEQLSLFEEIKPLFKN-------KPVIVVLNKIDLLTFEDLS 132 (168)
T ss_pred hccCcEEEEEeCCcccccchHHHHHHHHHHHhhcCc-------CCeEEEEEccccCchhhHH
Confidence 336899999999998764 6667888888765433 5888999999997655544
No 147
>PRK04213 GTP-binding protein; Provisional
Probab=99.40 E-value=3.4e-13 Score=103.32 Aligned_cols=123 Identities=11% Similarity=-0.009 Sum_probs=71.8
Q ss_pred eeeEEE-EeCCCCc---eeEeeec-cCCCcccCcceeeeeEEEEEecCCCeeeeCCC-----------chhchhhhhhhh
Q psy15036 42 FNFGTQ-LGRRGIP---LLKHLKY-LGTGTHGKTVGIVFPAISVTYSIGPRYFRFPL-----------VSRFLSLTTGLY 105 (179)
Q Consensus 42 ~~~Kiv-lG~~gvG---~~~~~~~-~~~~~~~~Ti~~~~~~k~v~~~~~~~iwDt~G-----------~e~~~~~~~~~~ 105 (179)
..+||+ +|.++|| ++..+.+ .+...+.|+. ++....+.++ +-.+|||+| +++++.+...|+
T Consensus 8 ~~~~i~i~G~~~~GKSsLin~l~~~~~~~~~~~~~--t~~~~~~~~~-~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~ 84 (201)
T PRK04213 8 RKPEIVFVGRSNVGKSTLVRELTGKKVRVGKRPGV--TRKPNHYDWG-DFILTDLPGFGFMSGVPKEVQEKIKDEIVRYI 84 (201)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCce--eeCceEEeec-ceEEEeCCccccccccCHHHHHHHHHHHHHHH
Confidence 467897 9999999 5655553 2333344433 3433444444 333399999 788888888887
Q ss_pred c-CCcEEEEEEeCCChhhHHHH-HHHHHH---------HHHHhCCccCccccceEEEEeeCCCcCCCCCCCHHHHHHHHh
Q psy15036 106 R-GTMGFLLIFDVTNENSFKDV-EKWLLQ---------IKVMDGALFTHFELQIVFMRGCLELLQRCREVVTPDQIMFGS 174 (179)
Q Consensus 106 ~-~~~~vilvyDit~~~Sf~~l-~~w~~~---------i~~~~~~~~~~~~~~~iilvGnK~Dl~~~r~Vs~~e~~~~a~ 174 (179)
+ +++.+.+++.+.+..++.++ ..|... +......+ .|+++|+||+|+.+.+ .+.+.++++
T Consensus 85 ~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~------~p~iiv~NK~Dl~~~~---~~~~~~~~~ 155 (201)
T PRK04213 85 EDNADRILAAVLVVDGKSFIEIIERWEGRGEIPIDVEMFDFLRELG------IPPIVAVNKMDKIKNR---DEVLDEIAE 155 (201)
T ss_pred HhhhhhheEEEEEEeCccccccccccccCCCcHHHHHHHHHHHHcC------CCeEEEEECccccCcH---HHHHHHHHH
Confidence 6 55544444444444555444 344211 11111122 5788999999996543 345556655
Q ss_pred hh
Q psy15036 175 TQ 176 (179)
Q Consensus 175 ~~ 176 (179)
..
T Consensus 156 ~~ 157 (201)
T PRK04213 156 RL 157 (201)
T ss_pred Hh
Confidence 44
No 148
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=99.37 E-value=3.2e-12 Score=109.45 Aligned_cols=107 Identities=9% Similarity=0.001 Sum_probs=78.5
Q ss_pred ceeeEEE-EeCCCCc---eeEeeecc---CCCcccCcceeeeeEEEEEecCCCee--eeCCCchhchh--------hhhh
Q psy15036 41 SFNFGTQ-LGRRGIP---LLKHLKYL---GTGTHGKTVGIVFPAISVTYSIGPRY--FRFPLVSRFLS--------LTTG 103 (179)
Q Consensus 41 ~~~~Kiv-lG~~gvG---~~~~~~~~---~~~~~~~Ti~~~~~~k~v~~~~~~~i--wDt~G~e~~~~--------~~~~ 103 (179)
...+||+ +|+++|| +++.+... ....+ |....++....+.++ +.++ |||+|+.++.. ....
T Consensus 201 ~~g~kVvIvG~~nvGKSSLiN~L~~~~~aivs~~-pgtTrd~~~~~i~~~-g~~v~l~DTaG~~~~~~~ie~~gi~~~~~ 278 (442)
T TIGR00450 201 DDGFKLAIVGSPNVGKSSLLNALLKQDRAIVSDI-KGTTRDVVEGDFELN-GILIKLLDTAGIREHADFVERLGIEKSFK 278 (442)
T ss_pred hcCCEEEEECCCCCcHHHHHHHHhCCCCcccCCC-CCcEEEEEEEEEEEC-CEEEEEeeCCCcccchhHHHHHHHHHHHH
Confidence 3468997 9999999 66555532 22333 333456667788888 8877 99999865543 2346
Q ss_pred hhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCC
Q psy15036 104 LYRGTMGFLLIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQR 160 (179)
Q Consensus 104 ~~~~~~~vilvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~ 160 (179)
+++.+|++++|||.+++.+++.. |+..+.. .+ .|+++|+||+|+.+
T Consensus 279 ~~~~aD~il~V~D~s~~~s~~~~--~l~~~~~---~~------~piIlV~NK~Dl~~ 324 (442)
T TIGR00450 279 AIKQADLVIYVLDASQPLTKDDF--LIIDLNK---SK------KPFILVLNKIDLKI 324 (442)
T ss_pred HHhhCCEEEEEEECCCCCChhHH--HHHHHhh---CC------CCEEEEEECccCCC
Confidence 88999999999999999998876 7766542 22 57889999999964
No 149
>smart00010 small_GTPase Small GTPase of the Ras superfamily; ill-defined subfamily. SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily.
Probab=99.33 E-value=4.6e-12 Score=89.12 Aligned_cols=101 Identities=17% Similarity=0.193 Sum_probs=74.9
Q ss_pred eEEE-EeCCCCc---eeEeee-ccCCCccc-CcceeeeeEEEEEecCCCeeeeCCCchhchhhhhhhhcCCcEEEEEEeC
Q psy15036 44 FGTQ-LGRRGIP---LLKHLK-YLGTGTHG-KTVGIVFPAISVTYSIGPRYFRFPLVSRFLSLTTGLYRGTMGFLLIFDV 117 (179)
Q Consensus 44 ~Kiv-lG~~gvG---~~~~~~-~~~~~~~~-~Ti~~~~~~k~v~~~~~~~iwDt~G~e~~~~~~~~~~~~~~~vilvyDi 117 (179)
+|++ +|+.||| ++.++. ..+...+. +|++ +..+...+++.++++++||+.
T Consensus 1 ~kvv~~G~~gvGKt~l~~~~~~~~~~~~~~~~t~~------------------------~~~~~~~~~~s~~~~~~v~~~ 56 (124)
T smart00010 1 FKVVGIGDSGVGKVGKSARFVQFPFDYVPTVFTIG------------------------IDVYDPTSYESFDVVLQCWRV 56 (124)
T ss_pred CEEEEECCCChhHHHHHHHHhcCCccccCceehhh------------------------hhhccccccCCCCEEEEEEEc
Confidence 5888 9999999 444433 44444443 4444 122335678899999999999
Q ss_pred CChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCCCCCCCHHHHHHHHhhh
Q psy15036 118 TNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQRCREVVTPDQIMFGSTQ 176 (179)
Q Consensus 118 t~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~~r~Vs~~e~~~~a~~~ 176 (179)
++++||+++ |...+......+ +|++++|||.|+.+++++..+++..|++..
T Consensus 57 ~~~~s~~~~--~~~~i~~~~k~d------l~~~~~~nk~dl~~~~~~~~~~~~~~~~~s 107 (124)
T smart00010 57 DDRDSADNK--NVPEVLVGNKSD------LPILVGGNRDVLEEERQVATEEGLEFAETS 107 (124)
T ss_pred cCHHHHHHH--hHHHHHhcCCCC------CcEEEEeechhhHhhCcCCHHHHHHHHHHh
Confidence 999999887 988877654444 678899999999777789998898888653
No 150
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=99.32 E-value=6.5e-12 Score=104.66 Aligned_cols=111 Identities=10% Similarity=-0.078 Sum_probs=78.9
Q ss_pred eeeEEE-EeCCCCc---eeEeeeccC--C-CcccCcceeeeeEEEEEecCCCee--eeCCCc---------hhchhhhhh
Q psy15036 42 FNFGTQ-LGRRGIP---LLKHLKYLG--T-GTHGKTVGIVFPAISVTYSIGPRY--FRFPLV---------SRFLSLTTG 103 (179)
Q Consensus 42 ~~~Kiv-lG~~gvG---~~~~~~~~~--~-~~~~~Ti~~~~~~k~v~~~~~~~i--wDt~G~---------e~~~~~~~~ 103 (179)
..++|+ +|..++| +++.+.+.. . +...+|.. ...+.+.+.++..+ |||+|. +.|.... .
T Consensus 188 ~~~~ValvG~~NvGKSSLln~L~~~~~~v~~~~~tT~d--~~~~~i~~~~~~~i~l~DT~G~~~~l~~~lie~f~~tl-e 264 (351)
T TIGR03156 188 DVPTVALVGYTNAGKSTLFNALTGADVYAADQLFATLD--PTTRRLDLPDGGEVLLTDTVGFIRDLPHELVAAFRATL-E 264 (351)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCceeeccCCccccC--CEEEEEEeCCCceEEEEecCcccccCCHHHHHHHHHHH-H
Confidence 358897 9999999 666655321 1 22344543 44566777425666 999997 3343322 2
Q ss_pred hhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCCC
Q psy15036 104 LYRGTMGFLLIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQRC 161 (179)
Q Consensus 104 ~~~~~~~vilvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~~ 161 (179)
.++++|++++|+|.+++.+++.+..|.+.+.+....+ .|+++|+||+|+...
T Consensus 265 ~~~~ADlil~VvD~s~~~~~~~~~~~~~~L~~l~~~~------~piIlV~NK~Dl~~~ 316 (351)
T TIGR03156 265 EVREADLLLHVVDASDPDREEQIEAVEKVLEELGAED------IPQLLVYNKIDLLDE 316 (351)
T ss_pred HHHhCCEEEEEEECCCCchHHHHHHHHHHHHHhccCC------CCEEEEEEeecCCCh
Confidence 5889999999999999999999888887777655433 578899999999653
No 151
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=99.32 E-value=8.5e-12 Score=91.25 Aligned_cols=115 Identities=11% Similarity=-0.023 Sum_probs=76.2
Q ss_pred EeCCCCc---eeEeeecc-CCCcccCcceeeeeEEEEEecCCCee--eeCCCchhchh------hhhhhhc--CCcEEEE
Q psy15036 48 LGRRGIP---LLKHLKYL-GTGTHGKTVGIVFPAISVTYSIGPRY--FRFPLVSRFLS------LTTGLYR--GTMGFLL 113 (179)
Q Consensus 48 lG~~gvG---~~~~~~~~-~~~~~~~Ti~~~~~~k~v~~~~~~~i--wDt~G~e~~~~------~~~~~~~--~~~~vil 113 (179)
+|..||| ++..+.+. +...+.++...+.....+.++ +..+ |||+|++.+.. +...++. +++++++
T Consensus 2 ~G~~~~GKssl~~~~~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~vi~ 80 (158)
T cd01879 2 VGNPNVGKTTLFNALTGARQKVGNWPGVTVEKKEGRFKLG-GKEIEIVDLPGTYSLSPYSEDEKVARDFLLGEKPDLIVN 80 (158)
T ss_pred CCCCCCCHHHHHHHHhcCcccccCCCCcccccceEEEeeC-CeEEEEEECCCccccCCCChhHHHHHHHhcCCCCcEEEE
Confidence 7999999 55555532 233333444445555667777 7666 99999988764 3566775 9999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCCCCCCCHHHHHHHHhhh
Q psy15036 114 IFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQRCREVVTPDQIMFGSTQ 176 (179)
Q Consensus 114 vyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~~r~Vs~~e~~~~a~~~ 176 (179)
|+|.++.++.. .|..++.+. + .|+++|+||+|+.+.+.+..+ ...+++..
T Consensus 81 v~d~~~~~~~~---~~~~~~~~~---~------~~~iiv~NK~Dl~~~~~~~~~-~~~~~~~~ 130 (158)
T cd01879 81 VVDATNLERNL---YLTLQLLEL---G------LPVVVALNMIDEAEKRGIKID-LDKLSELL 130 (158)
T ss_pred EeeCCcchhHH---HHHHHHHHc---C------CCEEEEEehhhhcccccchhh-HHHHHHhh
Confidence 99998865533 454444432 2 578899999999765555443 34555543
No 152
>cd00882 Ras_like_GTPase Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb
Probab=99.31 E-value=2.1e-11 Score=86.83 Aligned_cols=109 Identities=30% Similarity=0.441 Sum_probs=79.5
Q ss_pred EeCCCCc---eeEeeeccC--CCcccCcceeeeeEEEEEecCCCe--e--eeCCCchhchhhhhhhhcCCcEEEEEEeCC
Q psy15036 48 LGRRGIP---LLKHLKYLG--TGTHGKTVGIVFPAISVTYSIGPR--Y--FRFPLVSRFLSLTTGLYRGTMGFLLIFDVT 118 (179)
Q Consensus 48 lG~~gvG---~~~~~~~~~--~~~~~~Ti~~~~~~k~v~~~~~~~--i--wDt~G~e~~~~~~~~~~~~~~~vilvyDit 118 (179)
+|..|+| ++..+.... .....+|. .++........ +.. + ||++|+..+......+++.++++++|||.+
T Consensus 2 iG~~~~GKStl~~~l~~~~~~~~~~~~t~-~~~~~~~~~~~-~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~ 79 (157)
T cd00882 2 VGDSGVGKTSLLNRLLGGEFVPEEYETTI-IDFYSKTIEVD-GKKVKLQIWDTAGQERFRSLRRLYYRGADGIILVYDVT 79 (157)
T ss_pred CCcCCCcHHHHHHHHHhCCcCCcccccch-hheeeEEEEEC-CEEEEEEEEecCChHHHHhHHHHHhcCCCEEEEEEECc
Confidence 7999999 666655332 35556666 66665666543 223 2 999999999888888999999999999999
Q ss_pred ChhhHHHHHHHHHHHH-HHhCCccCccccceEEEEeeCCCcCCCCCC
Q psy15036 119 NENSFKDVEKWLLQIK-VMDGALFTHFELQIVFMRGCLELLQRCREV 164 (179)
Q Consensus 119 ~~~Sf~~l~~w~~~i~-~~~~~~~~~~~~~~iilvGnK~Dl~~~r~V 164 (179)
++.++..+..|+.... ...... .|+++|+||+|+......
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~------~~~ivv~nk~D~~~~~~~ 120 (157)
T cd00882 80 DRESFENVKEWLLLILINKEGEN------IPIILVGNKIDLPEERVV 120 (157)
T ss_pred CHHHHHHHHHHHHHHHHhhccCC------CcEEEEEeccccccccch
Confidence 9999999988843332 222232 688899999999764333
No 153
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=99.27 E-value=3e-11 Score=89.34 Aligned_cols=102 Identities=12% Similarity=0.007 Sum_probs=66.3
Q ss_pred EE-EeCCCCc---eeEeee-ccCCCcccCcceeeeeEEEEEec--CCCee--eeCCCchhchhhhhhhhcCCcEEEEEEe
Q psy15036 46 TQ-LGRRGIP---LLKHLK-YLGTGTHGKTVGIVFPAISVTYS--IGPRY--FRFPLVSRFLSLTTGLYRGTMGFLLIFD 116 (179)
Q Consensus 46 iv-lG~~gvG---~~~~~~-~~~~~~~~~Ti~~~~~~k~v~~~--~~~~i--wDt~G~e~~~~~~~~~~~~~~~vilvyD 116 (179)
|+ +|+.++| +++.+. ..+...+.++...+.....+..+ .+..+ |||+|++.|..++..+++.+|++++|+|
T Consensus 3 i~iiG~~~~GKtsli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~il~v~d 82 (168)
T cd01887 3 VTVMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAFEVPAEVLKIPGITFIDTPGHEAFTNMRARGASLTDIAILVVA 82 (168)
T ss_pred EEEEecCCCCHHHHHHHHHhcccccccCCCeEEeeccEEEecccCCcceEEEEeCCCcHHHHHHHHHHHhhcCEEEEEEE
Confidence 55 9999999 555554 33333322233323322333332 13344 9999999999999989999999999999
Q ss_pred CCCh---hhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCC
Q psy15036 117 VTNE---NSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQR 160 (179)
Q Consensus 117 it~~---~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~ 160 (179)
.++. ++++.+.. ++. .. .|+++|+||+|+.+
T Consensus 83 ~~~~~~~~~~~~~~~----~~~---~~------~p~ivv~NK~Dl~~ 116 (168)
T cd01887 83 ADDGVMPQTIEAIKL----AKA---AN------VPFIVALNKIDKPN 116 (168)
T ss_pred CCCCccHHHHHHHHH----HHH---cC------CCEEEEEEceeccc
Confidence 9984 44443322 222 22 47788999999964
No 154
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.26 E-value=2.8e-11 Score=104.56 Aligned_cols=107 Identities=13% Similarity=0.030 Sum_probs=73.8
Q ss_pred eeEEE-EeCCCCc---eeEeeeccCCC--cccCcceeeeeEEEEEecCCCee--eeCCCchh--------chhhhhhhhc
Q psy15036 43 NFGTQ-LGRRGIP---LLKHLKYLGTG--THGKTVGIVFPAISVTYSIGPRY--FRFPLVSR--------FLSLTTGLYR 106 (179)
Q Consensus 43 ~~Kiv-lG~~gvG---~~~~~~~~~~~--~~~~Ti~~~~~~k~v~~~~~~~i--wDt~G~e~--------~~~~~~~~~~ 106 (179)
..||+ +|.++|| +++++.+.... ...|.+..+.....+.++ +..+ |||+|++. +......+++
T Consensus 38 ~~~V~IvG~~nvGKSSL~nrl~~~~~~~v~~~~gvT~d~~~~~~~~~-~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~ 116 (472)
T PRK03003 38 LPVVAVVGRPNVGKSTLVNRILGRREAVVEDVPGVTRDRVSYDAEWN-GRRFTVVDTGGWEPDAKGLQASVAEQAEVAMR 116 (472)
T ss_pred CCEEEEEcCCCCCHHHHHHHHhCcCcccccCCCCCCEeeEEEEEEEC-CcEEEEEeCCCcCCcchhHHHHHHHHHHHHHH
Confidence 36787 9999999 66666643222 223333334445566677 7777 99999763 4445667899
Q ss_pred CCcEEEEEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCC
Q psy15036 107 GTMGFLLIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQR 160 (179)
Q Consensus 107 ~~~~vilvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~ 160 (179)
++|++|+|||.++..++.. ..|...+++ .+ .|++||+||+|+..
T Consensus 117 ~aD~il~VvD~~~~~s~~~-~~i~~~l~~---~~------~piilV~NK~Dl~~ 160 (472)
T PRK03003 117 TADAVLFVVDATVGATATD-EAVARVLRR---SG------KPVILAANKVDDER 160 (472)
T ss_pred hCCEEEEEEECCCCCCHHH-HHHHHHHHH---cC------CCEEEEEECccCCc
Confidence 9999999999999877653 344444443 22 58899999999964
No 155
>KOG0076|consensus
Probab=99.25 E-value=1.1e-11 Score=92.13 Aligned_cols=118 Identities=15% Similarity=0.151 Sum_probs=89.4
Q ss_pred eeEEE-EeCCCCc---ee--------EeeeccCCCcccCcceeeeeEEEEEecCCCee--eeCCCchhchhhhhhhhcCC
Q psy15036 43 NFGTQ-LGRRGIP---LL--------KHLKYLGTGTHGKTVGIVFPAISVTYSIGPRY--FRFPLVSRFLSLTTGLYRGT 108 (179)
Q Consensus 43 ~~Kiv-lG~~gvG---~~--------~~~~~~~~~~~~~Ti~~~~~~k~v~~~~~~~i--wDt~G~e~~~~~~~~~~~~~ 108 (179)
.+-|+ +|.+..| ++ ..+....+++..||+|.... .+.++ +.++ ||..||+..++++..||..+
T Consensus 17 ~y~vlIlgldnAGKttfLe~~Kt~~~~~~~~l~~~ki~~tvgLnig--~i~v~-~~~l~fwdlgGQe~lrSlw~~yY~~~ 93 (197)
T KOG0076|consen 17 DYSVLILGLDNAGKTTFLEALKTDFSKAYGGLNPSKITPTVGLNIG--TIEVC-NAPLSFWDLGGQESLRSLWKKYYWLA 93 (197)
T ss_pred hhhheeeccccCCchhHHHHHHHHHHhhhcCCCHHHeecccceeec--ceeec-cceeEEEEcCChHHHHHHHHHHHHHh
Confidence 35576 9999999 11 12224445777889996654 55667 6776 99999999999999999999
Q ss_pred cEEEEEEeCCChhhHHHHHHHHHHHHHH-hCCccCccccceEEEEeeCCCcCCCCCCCHHHHHH
Q psy15036 109 MGFLLIFDVTNENSFKDVEKWLLQIKVM-DGALFTHFELQIVFMRGCLELLQRCREVVTPDQIM 171 (179)
Q Consensus 109 ~~vilvyDit~~~Sf~~l~~w~~~i~~~-~~~~~~~~~~~~iilvGnK~Dl~~~r~Vs~~e~~~ 171 (179)
|++|+++|.++++-|+....-++.+... .... .|+++.+||.|+++ .++..|.+.
T Consensus 94 H~ii~viDa~~~eR~~~~~t~~~~v~~~E~leg------~p~L~lankqd~q~--~~~~~El~~ 149 (197)
T KOG0076|consen 94 HGIIYVIDATDRERFEESKTAFEKVVENEKLEG------APVLVLANKQDLQN--AMEAAELDG 149 (197)
T ss_pred ceeEEeecCCCHHHHHHHHHHHHHHHHHHHhcC------Cchhhhcchhhhhh--hhhHHHHHH
Confidence 9999999999999999997766666433 3333 67888899999976 455555443
No 156
>KOG0074|consensus
Probab=99.24 E-value=3e-11 Score=87.13 Aligned_cols=111 Identities=20% Similarity=0.216 Sum_probs=88.4
Q ss_pred ceeeEEE-EeCCCCc---eeEeeeccCCCcccCcceeeeeEEEEEecCCCe-e--eeCCCchhchhhhhhhhcCCcEEEE
Q psy15036 41 SFNFGTQ-LGRRGIP---LLKHLKYLGTGTHGKTVGIVFPAISVTYSIGPR-Y--FRFPLVSRFLSLTTGLYRGTMGFLL 113 (179)
Q Consensus 41 ~~~~Kiv-lG~~gvG---~~~~~~~~~~~~~~~Ti~~~~~~k~v~~~~~~~-i--wDt~G~e~~~~~~~~~~~~~~~vil 113 (179)
...+||+ +|-...| ++..+....+....||-| |..+.+..+ +.- + ||.+||...+..+.+||.+.|++|+
T Consensus 15 ~rEirilllGldnAGKTT~LKqL~sED~~hltpT~G--Fn~k~v~~~-g~f~LnvwDiGGqr~IRpyWsNYyenvd~lIy 91 (185)
T KOG0074|consen 15 RREIRILLLGLDNAGKTTFLKQLKSEDPRHLTPTNG--FNTKKVEYD-GTFHLNVWDIGGQRGIRPYWSNYYENVDGLIY 91 (185)
T ss_pred cceEEEEEEecCCCcchhHHHHHccCChhhccccCC--cceEEEeec-CcEEEEEEecCCccccchhhhhhhhccceEEE
Confidence 3579997 9999999 666666666777889998 556778777 633 3 9999999999999999999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHH-HHhCCccCccccceEEEEeeCCCcCC
Q psy15036 114 IFDVTNENSFKDVEKWLLQIK-VMDGALFTHFELQIVFMRGCLELLQR 160 (179)
Q Consensus 114 vyDit~~~Sf~~l~~w~~~i~-~~~~~~~~~~~~~~iilvGnK~Dl~~ 160 (179)
|.|.+++.-|+++..-+-++. ...-.. .|+.+.+||-|+-.
T Consensus 92 VIDS~D~krfeE~~~el~ELleeeKl~~------vpvlIfankQdllt 133 (185)
T KOG0074|consen 92 VIDSTDEKRFEEISEELVELLEEEKLAE------VPVLIFANKQDLLT 133 (185)
T ss_pred EEeCCchHhHHHHHHHHHHHhhhhhhhc------cceeehhhhhHHHh
Confidence 999999999999965544444 444333 67777799999865
No 157
>KOG1707|consensus
Probab=99.24 E-value=2.8e-11 Score=104.17 Aligned_cols=116 Identities=13% Similarity=0.068 Sum_probs=80.8
Q ss_pred eeeEEE-EeCCCCc----eeEeeeccCCCcccCc-----ceeeeeEEEEEecCCCee--eeCCCchhchhhhhhhhcCCc
Q psy15036 42 FNFGTQ-LGRRGIP----LLKHLKYLGTGTHGKT-----VGIVFPAISVTYSIGPRY--FRFPLVSRFLSLTTGLYRGTM 109 (179)
Q Consensus 42 ~~~Kiv-lG~~gvG----~~~~~~~~~~~~~~~T-----i~~~~~~k~v~~~~~~~i--wDt~G~e~~~~~~~~~~~~~~ 109 (179)
...+|| +||.||| ++..+...|++...+- |..++. -+ +.++ .|++..+.-+.....-++.+|
T Consensus 8 kdVRIvliGD~G~GKtSLImSL~~eef~~~VP~rl~~i~IPadvt-----Pe-~vpt~ivD~ss~~~~~~~l~~EirkA~ 81 (625)
T KOG1707|consen 8 KDVRIVLIGDEGVGKTSLIMSLLEEEFVDAVPRRLPRILIPADVT-----PE-NVPTSIVDTSSDSDDRLCLRKEIRKAD 81 (625)
T ss_pred cceEEEEECCCCccHHHHHHHHHhhhccccccccCCccccCCccC-----cC-cCceEEEecccccchhHHHHHHHhhcC
Confidence 468998 9999999 3333334455544432 222221 11 1112 788765555555577899999
Q ss_pred EEEEEEeCCChhhHHHH-HHHHHHHHHHhCCccCccccceEEEEeeCCCcCCCCCCCHH
Q psy15036 110 GFLLIFDVTNENSFKDV-EKWLLQIKVMDGALFTHFELQIVFMRGCLELLQRCREVVTP 167 (179)
Q Consensus 110 ~vilvyDit~~~Sf~~l-~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~~r~Vs~~ 167 (179)
++.++|++++++|.+.+ .+|+..+++..+.. ...||||||||+|+......+.+
T Consensus 82 vi~lvyavd~~~T~D~ist~WLPlir~~~~~~----~~~PVILvGNK~d~~~~~~~s~e 136 (625)
T KOG1707|consen 82 VICLVYAVDDESTVDRISTKWLPLIRQLFGDY----HETPVILVGNKSDNGDNENNSDE 136 (625)
T ss_pred EEEEEEecCChHHhhhhhhhhhhhhhcccCCC----ccCCEEEEeeccCCccccccchh
Confidence 99999999999999999 48999999987543 12799999999999775555333
No 158
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.24 E-value=3.3e-11 Score=104.08 Aligned_cols=108 Identities=12% Similarity=-0.005 Sum_probs=76.4
Q ss_pred eeeEEE-EeCCCCc---eeEeeeccC--CCcccCcceeeeeEEEEEecCCCee--eeCCCc----------hhchhhh-h
Q psy15036 42 FNFGTQ-LGRRGIP---LLKHLKYLG--TGTHGKTVGIVFPAISVTYSIGPRY--FRFPLV----------SRFLSLT-T 102 (179)
Q Consensus 42 ~~~Kiv-lG~~gvG---~~~~~~~~~--~~~~~~Ti~~~~~~k~v~~~~~~~i--wDt~G~----------e~~~~~~-~ 102 (179)
...||+ +|.++|| ++..+.+.. .....++...+.....+.++ +..+ |||+|. +.|..+. .
T Consensus 210 ~~~kI~iiG~~nvGKSSLin~l~~~~~~~~s~~~gtT~d~~~~~~~~~-~~~~~l~DTaG~~~~~~~~~~~e~~~~~~~~ 288 (472)
T PRK03003 210 GPRRVALVGKPNVGKSSLLNKLAGEERSVVDDVAGTTVDPVDSLIELG-GKTWRFVDTAGLRRRVKQASGHEYYASLRTH 288 (472)
T ss_pred cceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCccCCcceEEEEEC-CEEEEEEECCCccccccccchHHHHHHHHHH
Confidence 358997 9999999 565555331 12233444455555677788 8777 999994 4555444 3
Q ss_pred hhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCC
Q psy15036 103 GLYRGTMGFLLIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQR 160 (179)
Q Consensus 103 ~~~~~~~~vilvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~ 160 (179)
.+++++|++++|||.++..|+..+. |+..+.. .. .|+|+|+||+||.+
T Consensus 289 ~~i~~ad~vilV~Da~~~~s~~~~~-~~~~~~~---~~------~piIiV~NK~Dl~~ 336 (472)
T PRK03003 289 AAIEAAEVAVVLIDASEPISEQDQR-VLSMVIE---AG------RALVLAFNKWDLVD 336 (472)
T ss_pred HHHhcCCEEEEEEeCCCCCCHHHHH-HHHHHHH---cC------CCEEEEEECcccCC
Confidence 4689999999999999999998874 4444433 22 57889999999964
No 159
>PRK12299 obgE GTPase CgtA; Reviewed
Probab=99.23 E-value=6.5e-11 Score=98.08 Aligned_cols=122 Identities=11% Similarity=-0.029 Sum_probs=80.3
Q ss_pred EeCCCCc---eeEeeeccC--CCccc-CcceeeeeEEEEEecCCCee--eeCCCchh----chhhhhhhhc---CCcEEE
Q psy15036 48 LGRRGIP---LLKHLKYLG--TGTHG-KTVGIVFPAISVTYSIGPRY--FRFPLVSR----FLSLTTGLYR---GTMGFL 112 (179)
Q Consensus 48 lG~~gvG---~~~~~~~~~--~~~~~-~Ti~~~~~~k~v~~~~~~~i--wDt~G~e~----~~~~~~~~~~---~~~~vi 112 (179)
||.+++| +++.+.... ...|. .|+.... ..+.+.++..+ ||++|.-+ ...+...|++ .+++++
T Consensus 164 VG~PNaGKSTLln~ls~a~~~va~ypfTT~~p~~--G~v~~~~~~~~~i~D~PGli~ga~~~~gLg~~flrhie~a~vlI 241 (335)
T PRK12299 164 VGLPNAGKSTLISAVSAAKPKIADYPFTTLHPNL--GVVRVDDYKSFVIADIPGLIEGASEGAGLGHRFLKHIERTRLLL 241 (335)
T ss_pred EcCCCCCHHHHHHHHHcCCCccCCCCCceeCceE--EEEEeCCCcEEEEEeCCCccCCCCccccHHHHHHHHhhhcCEEE
Confidence 9999999 555555321 11222 2333322 23445315555 99999732 2234445444 699999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCCCCCCCHHHHHHHHhh
Q psy15036 113 LIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQRCREVVTPDQIMFGST 175 (179)
Q Consensus 113 lvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~~r~Vs~~e~~~~a~~ 175 (179)
+|+|++++++++++..|.+++..+.+.- ...|+++|+||+|+.+.+.+..++.+.++++
T Consensus 242 ~ViD~s~~~s~e~~~~~~~EL~~~~~~L----~~kp~IIV~NKiDL~~~~~~~~~~~~~~~~~ 300 (335)
T PRK12299 242 HLVDIEAVDPVEDYKTIRNELEKYSPEL----ADKPRILVLNKIDLLDEEEEREKRAALELAA 300 (335)
T ss_pred EEEcCCCCCCHHHHHHHHHHHHHhhhhc----ccCCeEEEEECcccCCchhHHHHHHHHHHHh
Confidence 9999999999999999999998875421 0157889999999977666665556655543
No 160
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=99.23 E-value=2.4e-11 Score=104.35 Aligned_cols=107 Identities=12% Similarity=-0.061 Sum_probs=75.4
Q ss_pred eeEEE-EeCCCCc---eeEeeeccC---CCcccCcceeeeeEEEEEecCCCee--eeCCCchhchhh--------hhhhh
Q psy15036 43 NFGTQ-LGRRGIP---LLKHLKYLG---TGTHGKTVGIVFPAISVTYSIGPRY--FRFPLVSRFLSL--------TTGLY 105 (179)
Q Consensus 43 ~~Kiv-lG~~gvG---~~~~~~~~~---~~~~~~Ti~~~~~~k~v~~~~~~~i--wDt~G~e~~~~~--------~~~~~ 105 (179)
.+||+ +|..++| ++..+.... ...+ +....++..+.+.++ +.++ |||+|.+.+... ...++
T Consensus 215 ~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~-~gtT~d~~~~~i~~~-g~~i~l~DT~G~~~~~~~ie~~gi~~~~~~~ 292 (449)
T PRK05291 215 GLKVVIAGRPNVGKSSLLNALLGEERAIVTDI-AGTTRDVIEEHINLD-GIPLRLIDTAGIRETDDEVEKIGIERSREAI 292 (449)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCcccCCC-CCcccccEEEEEEEC-CeEEEEEeCCCCCCCccHHHHHHHHHHHHHH
Confidence 47897 9999999 555555321 2222 222234556677788 8777 999998765432 23478
Q ss_pred cCCcEEEEEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCCCCC
Q psy15036 106 RGTMGFLLIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQRCRE 163 (179)
Q Consensus 106 ~~~~~vilvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~~r~ 163 (179)
+++|++++|||.+++.+++....|.. . .+ .|+++|+||+|+.+.+.
T Consensus 293 ~~aD~il~VvD~s~~~s~~~~~~l~~-----~-~~------~piiiV~NK~DL~~~~~ 338 (449)
T PRK05291 293 EEADLVLLVLDASEPLTEEDDEILEE-----L-KD------KPVIVVLNKADLTGEID 338 (449)
T ss_pred HhCCEEEEEecCCCCCChhHHHHHHh-----c-CC------CCcEEEEEhhhccccch
Confidence 99999999999999999987766644 2 22 57889999999965443
No 161
>KOG0072|consensus
Probab=99.22 E-value=1.5e-10 Score=83.71 Aligned_cols=110 Identities=13% Similarity=0.121 Sum_probs=85.6
Q ss_pred eeeEEE-EeCCCCc---eeEeeeccCCCcccCcceeeeeEEEEEecCCCee--eeCCCchhchhhhhhhhcCCcEEEEEE
Q psy15036 42 FNFGTQ-LGRRGIP---LLKHLKYLGTGTHGKTVGIVFPAISVTYSIGPRY--FRFPLVSRFLSLTTGLYRGTMGFLLIF 115 (179)
Q Consensus 42 ~~~Kiv-lG~~gvG---~~~~~~~~~~~~~~~Ti~~~~~~k~v~~~~~~~i--wDt~G~e~~~~~~~~~~~~~~~vilvy 115 (179)
...+++ +|-.|.| ++.++.........||+|. ...++.+. |-+. ||..||-..+..++.||.+++++|+|.
T Consensus 17 ~e~rililgldGaGkttIlyrlqvgevvttkPtigf--nve~v~yK-NLk~~vwdLggqtSirPyWRcYy~dt~avIyVV 93 (182)
T KOG0072|consen 17 REMRILILGLDGAGKTTILYRLQVGEVVTTKPTIGF--NVETVPYK-NLKFQVWDLGGQTSIRPYWRCYYADTDAVIYVV 93 (182)
T ss_pred cceEEEEeeccCCCeeEEEEEcccCcccccCCCCCc--Cccccccc-cccceeeEccCcccccHHHHHHhcccceEEEEE
Confidence 467887 9999999 6667765556677899984 44567777 6666 999999999999999999999999999
Q ss_pred eCCChhhHHHHHHHHHH-HHHHhCCccCccccceEEEEeeCCCcCC
Q psy15036 116 DVTNENSFKDVEKWLLQ-IKVMDGALFTHFELQIVFMRGCLELLQR 160 (179)
Q Consensus 116 Dit~~~Sf~~l~~w~~~-i~~~~~~~~~~~~~~~iilvGnK~Dl~~ 160 (179)
|.+|++.......-+.. +.+..-.. ..+++++||.|...
T Consensus 94 Dssd~dris~a~~el~~mL~E~eLq~------a~llv~anKqD~~~ 133 (182)
T KOG0072|consen 94 DSSDRDRISIAGVELYSMLQEEELQH------AKLLVFANKQDYSG 133 (182)
T ss_pred eccchhhhhhhHHHHHHHhccHhhcC------ceEEEEeccccchh
Confidence 99999888777544433 33332232 46778899999876
No 162
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=99.19 E-value=1.2e-10 Score=84.75 Aligned_cols=105 Identities=11% Similarity=-0.020 Sum_probs=70.2
Q ss_pred eEEE-EeCCCCc---eeEeeeccCC--CcccCcceeeeeEEEEEecCCCee--eeCCCchhchh--------hhhhhhcC
Q psy15036 44 FGTQ-LGRRGIP---LLKHLKYLGT--GTHGKTVGIVFPAISVTYSIGPRY--FRFPLVSRFLS--------LTTGLYRG 107 (179)
Q Consensus 44 ~Kiv-lG~~gvG---~~~~~~~~~~--~~~~~Ti~~~~~~k~v~~~~~~~i--wDt~G~e~~~~--------~~~~~~~~ 107 (179)
+||+ +|+.|+| ++..+..... ....++...++....+.++ +..+ |||+|...+.. ....+++.
T Consensus 2 ~~i~l~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~ 80 (157)
T cd04164 2 IKVVIVGKPNVGKSSLLNALAGRDRAIVSDIAGTTRDVIEESIDIG-GIPVRLIDTAGIRETEDEIEKIGIERAREAIEE 80 (157)
T ss_pred cEEEEECCCCCCHHHHHHHHHCCceEeccCCCCCccceEEEEEEeC-CEEEEEEECCCcCCCcchHHHHHHHHHHHHHhh
Confidence 4787 9999999 4444443211 1112233334444556666 6565 99999765532 23356789
Q ss_pred CcEEEEEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCCC
Q psy15036 108 TMGFLLIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQRC 161 (179)
Q Consensus 108 ~~~vilvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~~ 161 (179)
+|++++|+|++++.+..+.+.|.. ... .|+++|+||+|+.+.
T Consensus 81 ~~~~v~v~d~~~~~~~~~~~~~~~-----~~~-------~~vi~v~nK~D~~~~ 122 (157)
T cd04164 81 ADLVLFVIDASRGLDEEDLEILEL-----PAD-------KPIIVVLNKSDLLPD 122 (157)
T ss_pred CCEEEEEEECCCCCCHHHHHHHHh-----hcC-------CCEEEEEEchhcCCc
Confidence 999999999999999888766543 222 588899999998653
No 163
>TIGR01393 lepA GTP-binding protein LepA. LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.
Probab=99.18 E-value=1.4e-10 Score=102.74 Aligned_cols=105 Identities=15% Similarity=0.048 Sum_probs=74.5
Q ss_pred EEE-EeCCCCc---eeEeeec--------cCCCcccCc------ceeeeeEEEEEe-----cCCCee----eeCCCchhc
Q psy15036 45 GTQ-LGRRGIP---LLKHLKY--------LGTGTHGKT------VGIVFPAISVTY-----SIGPRY----FRFPLVSRF 97 (179)
Q Consensus 45 Kiv-lG~~gvG---~~~~~~~--------~~~~~~~~T------i~~~~~~k~v~~-----~~~~~i----wDt~G~e~~ 97 (179)
+|+ +|..++| ++.++.. .+...+..+ .|+++..+.+.+ + +..+ |||+|+++|
T Consensus 5 Ni~IIGh~d~GKTTL~~rLl~~~g~i~~~~~~~~~~D~~~~ErerGiTi~~~~v~~~~~~~~-g~~~~l~liDTPG~~dF 83 (595)
T TIGR01393 5 NFSIIAHIDHGKSTLADRLLEYTGAISEREMREQVLDSMDLERERGITIKAQAVRLNYKAKD-GETYVLNLIDTPGHVDF 83 (595)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCCccccccccccCCChHHHhcCCCeeeeEEEEEEEcCC-CCEEEEEEEECCCcHHH
Confidence 465 9999999 4444331 122333332 366665544443 3 4443 999999999
Q ss_pred hhhhhhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCC
Q psy15036 98 LSLTTGLYRGTMGFLLIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQR 160 (179)
Q Consensus 98 ~~~~~~~~~~~~~vilvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~ 160 (179)
......+++.+|++|+|||.++..+++....|...+. .+ .|+++|+||+|+.+
T Consensus 84 ~~~v~~~l~~aD~aILVvDat~g~~~qt~~~~~~~~~----~~------ipiIiViNKiDl~~ 136 (595)
T TIGR01393 84 SYEVSRSLAACEGALLLVDAAQGIEAQTLANVYLALE----ND------LEIIPVINKIDLPS 136 (595)
T ss_pred HHHHHHHHHhCCEEEEEecCCCCCCHhHHHHHHHHHH----cC------CCEEEEEECcCCCc
Confidence 9999999999999999999999877777777755432 22 57889999999964
No 164
>PRK15494 era GTPase Era; Provisional
Probab=99.18 E-value=1.7e-10 Score=95.76 Aligned_cols=117 Identities=17% Similarity=0.088 Sum_probs=73.8
Q ss_pred eeeEEE-EeCCCCc---eeEeeeccC----CCcccCcceeeeeEEEEEecCCCee--eeCCCch-hchhhhh-------h
Q psy15036 42 FNFGTQ-LGRRGIP---LLKHLKYLG----TGTHGKTVGIVFPAISVTYSIGPRY--FRFPLVS-RFLSLTT-------G 103 (179)
Q Consensus 42 ~~~Kiv-lG~~gvG---~~~~~~~~~----~~~~~~Ti~~~~~~k~v~~~~~~~i--wDt~G~e-~~~~~~~-------~ 103 (179)
..+||+ +|+++|| ++..+.+.. .+.+.+|.. .....+..+ +.++ |||+|+. .+..+.. .
T Consensus 51 k~~kV~ivG~~nvGKSTLin~l~~~k~~ivs~k~~tTr~--~~~~~~~~~-~~qi~~~DTpG~~~~~~~l~~~~~r~~~~ 127 (339)
T PRK15494 51 KTVSVCIIGRPNSGKSTLLNRIIGEKLSIVTPKVQTTRS--IITGIITLK-DTQVILYDTPGIFEPKGSLEKAMVRCAWS 127 (339)
T ss_pred ceeEEEEEcCCCCCHHHHHHHHhCCceeeccCCCCCccC--cEEEEEEeC-CeEEEEEECCCcCCCcccHHHHHHHHHHH
Confidence 456887 9999999 555554332 133344543 334556677 7777 9999984 3333222 2
Q ss_pred hhcCCcEEEEEEeCCChhhHHHHH-HHHHHHHHHhCCccCccccceEEEEeeCCCcCCCCCCCHHHHHHHHhh
Q psy15036 104 LYRGTMGFLLIFDVTNENSFKDVE-KWLLQIKVMDGALFTHFELQIVFMRGCLELLQRCREVVTPDQIMFGST 175 (179)
Q Consensus 104 ~~~~~~~vilvyDit~~~Sf~~l~-~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~~r~Vs~~e~~~~a~~ 175 (179)
.++++|++++|+|.+ ++|..+. .|++.++.. . .|+++|+||+|+.++ ..+++.+++.+
T Consensus 128 ~l~~aDvil~VvD~~--~s~~~~~~~il~~l~~~--~-------~p~IlViNKiDl~~~---~~~~~~~~l~~ 186 (339)
T PRK15494 128 SLHSADLVLLIIDSL--KSFDDITHNILDKLRSL--N-------IVPIFLLNKIDIESK---YLNDIKAFLTE 186 (339)
T ss_pred HhhhCCEEEEEEECC--CCCCHHHHHHHHHHHhc--C-------CCEEEEEEhhcCccc---cHHHHHHHHHh
Confidence 477999999999855 4677774 455555432 1 234578999999653 24566666544
No 165
>PRK15467 ethanolamine utilization protein EutP; Provisional
Probab=99.17 E-value=1.1e-10 Score=86.78 Aligned_cols=108 Identities=13% Similarity=0.026 Sum_probs=70.4
Q ss_pred EEE-EeCCCCc---eeEeeeccCCCcccCcceeeeeEEEEEecCCCeeeeCCCc-----hhchhhhhhhhcCCcEEEEEE
Q psy15036 45 GTQ-LGRRGIP---LLKHLKYLGTGTHGKTVGIVFPAISVTYSIGPRYFRFPLV-----SRFLSLTTGLYRGTMGFLLIF 115 (179)
Q Consensus 45 Kiv-lG~~gvG---~~~~~~~~~~~~~~~Ti~~~~~~k~v~~~~~~~iwDt~G~-----e~~~~~~~~~~~~~~~vilvy 115 (179)
||+ +|.++|| +++.+.+.+.. ..+|.+ +.+. +..+|||+|+ +.++.+. ..++++|++++||
T Consensus 3 ~i~~iG~~~~GKstl~~~l~~~~~~-~~~~~~-------v~~~-~~~~iDtpG~~~~~~~~~~~~~-~~~~~ad~il~v~ 72 (158)
T PRK15467 3 RIAFVGAVGAGKTTLFNALQGNYTL-ARKTQA-------VEFN-DKGDIDTPGEYFSHPRWYHALI-TTLQDVDMLIYVH 72 (158)
T ss_pred EEEEECCCCCCHHHHHHHHcCCCcc-CccceE-------EEEC-CCCcccCCccccCCHHHHHHHH-HHHhcCCEEEEEE
Confidence 676 9999999 66666554321 123333 2333 3335999997 3333333 2478999999999
Q ss_pred eCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCCCCCCCHHHHHHHHhhhC
Q psy15036 116 DVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQRCREVVTPDQIMFGSTQS 177 (179)
Q Consensus 116 Dit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~~r~Vs~~e~~~~a~~~~ 177 (179)
|.++.+++ +..|+..+ ... .|+++++||+|+.+ ...++..+++++.+
T Consensus 73 d~~~~~s~--~~~~~~~~---~~~-------~~ii~v~nK~Dl~~---~~~~~~~~~~~~~~ 119 (158)
T PRK15467 73 GANDPESR--LPAGLLDI---GVS-------KRQIAVISKTDMPD---ADVAATRKLLLETG 119 (158)
T ss_pred eCCCcccc--cCHHHHhc---cCC-------CCeEEEEEccccCc---ccHHHHHHHHHHcC
Confidence 99999887 34565543 122 47889999999954 34566777776654
No 166
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=99.16 E-value=9.4e-11 Score=87.17 Aligned_cols=118 Identities=17% Similarity=0.102 Sum_probs=72.6
Q ss_pred EeCCCCc---eeEeeeccC--CCcc-cCcceeeeeEEEEEecCCCee--eeCCCchh----chhhh---hhhhcCCcEEE
Q psy15036 48 LGRRGIP---LLKHLKYLG--TGTH-GKTVGIVFPAISVTYSIGPRY--FRFPLVSR----FLSLT---TGLYRGTMGFL 112 (179)
Q Consensus 48 lG~~gvG---~~~~~~~~~--~~~~-~~Ti~~~~~~k~v~~~~~~~i--wDt~G~e~----~~~~~---~~~~~~~~~vi 112 (179)
+|.+||| +++.+.+.. ...+ .+|..... ..+.++.+..+ |||+|... ...+. ..+++++++++
T Consensus 2 iG~~~~GKStll~~l~~~~~~~~~~~~~t~~~~~--~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~d~ii 79 (176)
T cd01881 2 VGLPNVGKSTLLNALTNAKPKVANYPFTTLEPNL--GVVEVPDGARIQVADIPGLIEGASEGRGLGNQFLAHIRRADAIL 79 (176)
T ss_pred CCCCCCcHHHHHHHHhcCCccccCCCceeecCcc--eEEEcCCCCeEEEEeccccchhhhcCCCccHHHHHHHhccCEEE
Confidence 7999999 666655432 2222 23333322 22333213444 99999732 22222 33578899999
Q ss_pred EEEeCCCh------hhHHHHHHHHHHHHHHhCCc-cCccccceEEEEeeCCCcCCCCCCCHH
Q psy15036 113 LIFDVTNE------NSFKDVEKWLLQIKVMDGAL-FTHFELQIVFMRGCLELLQRCREVVTP 167 (179)
Q Consensus 113 lvyDit~~------~Sf~~l~~w~~~i~~~~~~~-~~~~~~~~iilvGnK~Dl~~~r~Vs~~ 167 (179)
+|+|.+++ ++++.+..|...+....... +-.....|+++|+||+|+...+.+...
T Consensus 80 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~ 141 (176)
T cd01881 80 HVVDASEDDDIGGVDPLEDYEILNAELKLYDLETILGLLTAKPVIYVLNKIDLDDAEELEEE 141 (176)
T ss_pred EEEeccCCccccccCHHHHHHHHHHHHHHhhhhhHHHHHhhCCeEEEEEchhcCchhHHHHH
Confidence 99999998 68999999988887554210 000001578889999999765554443
No 167
>PRK11058 GTPase HflX; Provisional
Probab=99.15 E-value=1.8e-10 Score=98.28 Aligned_cols=108 Identities=9% Similarity=-0.049 Sum_probs=72.9
Q ss_pred eEEE-EeCCCCc---eeEeeeccC--C-CcccCcceeeeeEEEEEecCCC-ee--eeCCCchhc--hhhhh------hhh
Q psy15036 44 FGTQ-LGRRGIP---LLKHLKYLG--T-GTHGKTVGIVFPAISVTYSIGP-RY--FRFPLVSRF--LSLTT------GLY 105 (179)
Q Consensus 44 ~Kiv-lG~~gvG---~~~~~~~~~--~-~~~~~Ti~~~~~~k~v~~~~~~-~i--wDt~G~e~~--~~~~~------~~~ 105 (179)
.+|+ +|.+++| ++..+.+.. . +....|. +...+.+.+. +. .+ |||+|..+. ..+.. ..+
T Consensus 198 p~ValVG~~NaGKSSLlN~Lt~~~~~v~~~~~tTl--d~~~~~i~l~-~~~~~~l~DTaG~~r~lp~~lve~f~~tl~~~ 274 (426)
T PRK11058 198 PTVSLVGYTNAGKSTLFNRITEARVYAADQLFATL--DPTLRRIDVA-DVGETVLADTVGFIRHLPHDLVAAFKATLQET 274 (426)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCceeeccCCCCCc--CCceEEEEeC-CCCeEEEEecCcccccCCHHHHHHHHHHHHHh
Confidence 5786 9999999 555555321 1 1222344 3344566666 53 54 999998442 22222 346
Q ss_pred cCCcEEEEEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCC
Q psy15036 106 RGTMGFLLIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQR 160 (179)
Q Consensus 106 ~~~~~vilvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~ 160 (179)
+.+|++++|+|.+++.+++.+..|...+......+ .|+++|+||+|+..
T Consensus 275 ~~ADlIL~VvDaS~~~~~e~l~~v~~iL~el~~~~------~pvIiV~NKiDL~~ 323 (426)
T PRK11058 275 RQATLLLHVVDAADVRVQENIEAVNTVLEEIDAHE------IPTLLVMNKIDMLD 323 (426)
T ss_pred hcCCEEEEEEeCCCccHHHHHHHHHHHHHHhccCC------CCEEEEEEcccCCC
Confidence 89999999999999999999877766666554333 58889999999964
No 168
>TIGR02729 Obg_CgtA Obg family GTPase CgtA. This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.
Probab=99.13 E-value=3e-10 Score=93.98 Aligned_cols=123 Identities=12% Similarity=0.008 Sum_probs=78.1
Q ss_pred EEE-EeCCCCc---eeEeeeccC--CCccc-CcceeeeeEEEEEecCC-Cee--eeCCCchh----chhhhhhhhc---C
Q psy15036 45 GTQ-LGRRGIP---LLKHLKYLG--TGTHG-KTVGIVFPAISVTYSIG-PRY--FRFPLVSR----FLSLTTGLYR---G 107 (179)
Q Consensus 45 Kiv-lG~~gvG---~~~~~~~~~--~~~~~-~Ti~~~~~~k~v~~~~~-~~i--wDt~G~e~----~~~~~~~~~~---~ 107 (179)
.|. +|.+++| +++.+.... ...|. +|..... ..+.++ + ..+ ||++|..+ ...+...|++ .
T Consensus 159 dV~lvG~pnaGKSTLl~~lt~~~~~va~y~fTT~~p~i--g~v~~~-~~~~~~i~D~PGli~~a~~~~gLg~~flrhier 235 (329)
T TIGR02729 159 DVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLVPNL--GVVRVD-DGRSFVIADIPGLIEGASEGAGLGHRFLKHIER 235 (329)
T ss_pred cEEEEcCCCCCHHHHHHHHhcCCccccCCCCCccCCEE--EEEEeC-CceEEEEEeCCCcccCCcccccHHHHHHHHHHh
Confidence 354 9999999 555555321 11221 2222222 234555 4 555 99999743 2245556655 5
Q ss_pred CcEEEEEEeCCCh---hhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCCCCCCCHHHHHHHHhh
Q psy15036 108 TMGFLLIFDVTNE---NSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQRCREVVTPDQIMFGST 175 (179)
Q Consensus 108 ~~~vilvyDit~~---~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~~r~Vs~~e~~~~a~~ 175 (179)
++++++|+|+++. ++++++..|.+++..+...- ...|++||+||+|+.+.+. ..+..++++++
T Consensus 236 ad~ll~VvD~s~~~~~~~~e~l~~l~~EL~~~~~~l----~~kp~IIV~NK~DL~~~~~-~~~~~~~l~~~ 301 (329)
T TIGR02729 236 TRVLLHLIDISPLDGRDPIEDYEIIRNELKKYSPEL----AEKPRIVVLNKIDLLDEEE-LAELLKELKKA 301 (329)
T ss_pred hCEEEEEEcCccccccCHHHHHHHHHHHHHHhhhhh----ccCCEEEEEeCccCCChHH-HHHHHHHHHHH
Confidence 9999999999987 79999999999988764321 1157888999999976433 23445555543
No 169
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.11 E-value=4.9e-10 Score=82.60 Aligned_cols=115 Identities=15% Similarity=0.031 Sum_probs=69.5
Q ss_pred eeEEE-EeCCCCc---eeEeeeccC--CCcccCcceeeeeEEEEEecCCCee--eeCCCchhc----------hhh-hhh
Q psy15036 43 NFGTQ-LGRRGIP---LLKHLKYLG--TGTHGKTVGIVFPAISVTYSIGPRY--FRFPLVSRF----------LSL-TTG 103 (179)
Q Consensus 43 ~~Kiv-lG~~gvG---~~~~~~~~~--~~~~~~Ti~~~~~~k~v~~~~~~~i--wDt~G~e~~----------~~~-~~~ 103 (179)
.+||+ +|+.|+| ++..+.... .....+....+.....+..+ +..+ |||+|..+. ... ...
T Consensus 2 ~~~i~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~iiDtpG~~~~~~~~~~~e~~~~~~~~~ 80 (174)
T cd01895 2 PIRIAIIGRPNVGKSSLVNALLGEERVIVSDIAGTTRDSIDVPFEYD-GKKYTLIDTAGIRRKGKVEEGIEKYSVLRTLK 80 (174)
T ss_pred CcEEEEEcCCCCCHHHHHHHHhCccceeccCCCCCccCceeeEEEEC-CeeEEEEECCCCccccchhccHHHHHHHHHHH
Confidence 46887 9999999 444444221 11112222222333455566 6666 999997443 111 123
Q ss_pred hhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCCCCCCCHHH
Q psy15036 104 LYRGTMGFLLIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQRCREVVTPD 168 (179)
Q Consensus 104 ~~~~~~~vilvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~~r~Vs~~e 168 (179)
.++++|++++|+|.+++.++.... ++..+.. .. .|+++++||+|+.+.+....++
T Consensus 81 ~~~~~d~vi~v~d~~~~~~~~~~~-~~~~~~~---~~------~~~iiv~nK~Dl~~~~~~~~~~ 135 (174)
T cd01895 81 AIERADVVLLVIDATEGITEQDLR-IAGLILE---EG------KALVIVVNKWDLVEKDSKTMKE 135 (174)
T ss_pred HHhhcCeEEEEEeCCCCcchhHHH-HHHHHHh---cC------CCEEEEEeccccCCccHHHHHH
Confidence 578999999999999988876643 3333322 12 4788899999997654333333
No 170
>TIGR00487 IF-2 translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.
Probab=99.08 E-value=8.7e-10 Score=97.41 Aligned_cols=105 Identities=10% Similarity=-0.024 Sum_probs=70.9
Q ss_pred eeeEEE-EeCCCCc---eeEeeec-cCCCcccCcceeeeeEEEEEecCCC-ee--eeCCCchhchhhhhhhhcCCcEEEE
Q psy15036 42 FNFGTQ-LGRRGIP---LLKHLKY-LGTGTHGKTVGIVFPAISVTYSIGP-RY--FRFPLVSRFLSLTTGLYRGTMGFLL 113 (179)
Q Consensus 42 ~~~Kiv-lG~~gvG---~~~~~~~-~~~~~~~~Ti~~~~~~k~v~~~~~~-~i--wDt~G~e~~~~~~~~~~~~~~~vil 113 (179)
...+|+ +|..++| ++.++.. .+...+.+.+..+.....+.++ +. .+ |||+|++.|..++...++.+|++|+
T Consensus 86 r~p~V~I~Ghvd~GKTSLl~~l~~~~v~~~e~~GIT~~ig~~~v~~~-~~~~i~~iDTPGhe~F~~~r~rga~~aDiaIL 164 (587)
T TIGR00487 86 RPPVVTIMGHVDHGKTSLLDSIRKTKVAQGEAGGITQHIGAYHVENE-DGKMITFLDTPGHEAFTSMRARGAKVTDIVVL 164 (587)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhCCcccccCCceeecceEEEEEEC-CCcEEEEEECCCCcchhhHHHhhhccCCEEEE
Confidence 345676 9999999 5555542 2333333333333333455665 44 56 9999999999999999999999999
Q ss_pred EEeCCC---hhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCC
Q psy15036 114 IFDVTN---ENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQR 160 (179)
Q Consensus 114 vyDit~---~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~ 160 (179)
|||.++ +++++.+. .....+ .|+++++||+|+.+
T Consensus 165 VVda~dgv~~qT~e~i~-------~~~~~~------vPiIVviNKiDl~~ 201 (587)
T TIGR00487 165 VVAADDGVMPQTIEAIS-------HAKAAN------VPIIVAINKIDKPE 201 (587)
T ss_pred EEECCCCCCHhHHHHHH-------HHHHcC------CCEEEEEECccccc
Confidence 999886 45554432 111122 57889999999854
No 171
>TIGR00475 selB selenocysteine-specific elongation factor SelB. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.
Probab=99.08 E-value=5.3e-10 Score=98.83 Aligned_cols=117 Identities=14% Similarity=0.023 Sum_probs=81.9
Q ss_pred EE-EeCCCCc---eeEeeec----cCCCcccCcceeeeeEEEEEecCCCee--eeCCCchhchhhhhhhhcCCcEEEEEE
Q psy15036 46 TQ-LGRRGIP---LLKHLKY----LGTGTHGKTVGIVFPAISVTYSIGPRY--FRFPLVSRFLSLTTGLYRGTMGFLLIF 115 (179)
Q Consensus 46 iv-lG~~gvG---~~~~~~~----~~~~~~~~Ti~~~~~~k~v~~~~~~~i--wDt~G~e~~~~~~~~~~~~~~~vilvy 115 (179)
|. +|..++| +++.+.+ .+.+++.+++.+++....+.++ +..+ ||++|+++|......++.++|++++|+
T Consensus 3 I~iiG~~d~GKTTLi~aLtg~~~d~~~eE~~rGiTid~~~~~~~~~-~~~v~~iDtPGhe~f~~~~~~g~~~aD~aILVV 81 (581)
T TIGR00475 3 IATAGHVDHGKTTLLKALTGIAADRLPEEKKRGMTIDLGFAYFPLP-DYRLGFIDVPGHEKFISNAIAGGGGIDAALLVV 81 (581)
T ss_pred EEEECCCCCCHHHHHHHHhCccCcCChhHhcCCceEEeEEEEEEeC-CEEEEEEECCCHHHHHHHHHhhhccCCEEEEEE
Confidence 54 9999999 6666653 3445555666666655667777 6555 999999999888888899999999999
Q ss_pred eCCC---hhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCCCCCC--CHHHHHHHHhh
Q psy15036 116 DVTN---ENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQRCREV--VTPDQIMFGST 175 (179)
Q Consensus 116 Dit~---~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~~r~V--s~~e~~~~a~~ 175 (179)
|.++ +++++.+.. +.. .+- +.+++|+||+|+.++..+ ..++.+++.+.
T Consensus 82 Da~~G~~~qT~ehl~i----l~~-lgi-------~~iIVVlNK~Dlv~~~~~~~~~~ei~~~l~~ 134 (581)
T TIGR00475 82 DADEGVMTQTGEHLAV----LDL-LGI-------PHTIVVITKADRVNEEEIKRTEMFMKQILNS 134 (581)
T ss_pred ECCCCCcHHHHHHHHH----HHH-cCC-------CeEEEEEECCCCCCHHHHHHHHHHHHHHHHH
Confidence 9998 677766532 221 111 348899999999764433 24456666544
No 172
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=99.08 E-value=6.7e-10 Score=83.78 Aligned_cols=109 Identities=15% Similarity=0.056 Sum_probs=68.8
Q ss_pred ceeeEEE-EeCCCCc---eeEeeecc-CCCcccCcceeeeeEEEEEecCCCee-eeCCCc----------hhchhhhhhh
Q psy15036 41 SFNFGTQ-LGRRGIP---LLKHLKYL-GTGTHGKTVGIVFPAISVTYSIGPRY-FRFPLV----------SRFLSLTTGL 104 (179)
Q Consensus 41 ~~~~Kiv-lG~~gvG---~~~~~~~~-~~~~~~~Ti~~~~~~k~v~~~~~~~i-wDt~G~----------e~~~~~~~~~ 104 (179)
+...+|+ +|..|+| ++..+... +...+.++.+.+.....+.++ +.-. |||+|. +.+..+...|
T Consensus 16 ~~~~~i~ivG~~~~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~-~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 94 (179)
T TIGR03598 16 DDGPEIAFAGRSNVGKSSLINALTNRKKLARTSKTPGRTQLINFFEVN-DGFRLVDLPGYGYAKVSKEEKEKWQKLIEEY 94 (179)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCcceEEEEEEeC-CcEEEEeCCCCccccCChhHHHHHHHHHHHH
Confidence 3567887 9999999 56555543 334445555543333333444 4333 999994 3455555667
Q ss_pred hcC---CcEEEEEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCC
Q psy15036 105 YRG---TMGFLLIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQR 160 (179)
Q Consensus 105 ~~~---~~~vilvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~ 160 (179)
++. ++++++|+|.+++-+...... +..+.. .. .|+++|+||+|+..
T Consensus 95 l~~~~~~~~ii~vvd~~~~~~~~~~~~-~~~~~~---~~------~pviiv~nK~D~~~ 143 (179)
T TIGR03598 95 LEKRENLKGVVLLMDIRHPLKELDLEM-LEWLRE---RG------IPVLIVLTKADKLK 143 (179)
T ss_pred HHhChhhcEEEEEecCCCCCCHHHHHH-HHHHHH---cC------CCEEEEEECcccCC
Confidence 764 579999999988766655532 233322 12 47888999999854
No 173
>TIGR00437 feoB ferrous iron transporter FeoB. FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.
Probab=99.07 E-value=5.1e-10 Score=99.10 Aligned_cols=115 Identities=11% Similarity=0.014 Sum_probs=76.0
Q ss_pred eCCCCc---eeEeeecc-CCCcccCcceeeeeEEEEEecCCCee--eeCCCchhchhh------hhhhhc--CCcEEEEE
Q psy15036 49 GRRGIP---LLKHLKYL-GTGTHGKTVGIVFPAISVTYSIGPRY--FRFPLVSRFLSL------TTGLYR--GTMGFLLI 114 (179)
Q Consensus 49 G~~gvG---~~~~~~~~-~~~~~~~Ti~~~~~~k~v~~~~~~~i--wDt~G~e~~~~~------~~~~~~--~~~~vilv 114 (179)
|+++|| +++++.+. ......|+...+.....+.++ +..+ |||+|++++... .+.|+. ++|++++|
T Consensus 1 G~pNvGKSSL~N~Ltg~~~~v~n~pG~Tv~~~~~~i~~~-~~~i~lvDtPG~~~~~~~s~~e~v~~~~l~~~~aDvvI~V 79 (591)
T TIGR00437 1 GNPNVGKSTLFNALTGANQTVGNWPGVTVEKKEGKLGFQ-GEDIEIVDLPGIYSLTTFSLEEEVARDYLLNEKPDLVVNV 79 (591)
T ss_pred CCCCCCHHHHHHHHhCCCCeecCCCCeEEEEEEEEEEEC-CeEEEEEECCCccccCccchHHHHHHHHHhhcCCCEEEEE
Confidence 889999 66666533 223334555566666677777 7777 999999988654 344544 78999999
Q ss_pred EeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCCCCCCCHHHHHHHHhhhC
Q psy15036 115 FDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQRCREVVTPDQIMFGSTQS 177 (179)
Q Consensus 115 yDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~~r~Vs~~e~~~~a~~~~ 177 (179)
+|.++.+ +...+..++.+ .+ .|+++|+||+|+.+++.+.. +.++++++.+
T Consensus 80 vDat~le---r~l~l~~ql~~---~~------~PiIIVlNK~Dl~~~~~i~~-d~~~L~~~lg 129 (591)
T TIGR00437 80 VDASNLE---RNLYLTLQLLE---LG------IPMILALNLVDEAEKKGIRI-DEEKLEERLG 129 (591)
T ss_pred ecCCcch---hhHHHHHHHHh---cC------CCEEEEEehhHHHHhCCChh-hHHHHHHHcC
Confidence 9998743 22233333332 33 58889999999977666653 4566666543
No 174
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.07 E-value=1e-09 Score=93.71 Aligned_cols=104 Identities=11% Similarity=-0.047 Sum_probs=68.2
Q ss_pred eEEE-EeCCCCc---eeEeeeccCCC--cccCcceeeeeEEEEEecCCCee--eeCCCchh--------chhhhhhhhcC
Q psy15036 44 FGTQ-LGRRGIP---LLKHLKYLGTG--THGKTVGIVFPAISVTYSIGPRY--FRFPLVSR--------FLSLTTGLYRG 107 (179)
Q Consensus 44 ~Kiv-lG~~gvG---~~~~~~~~~~~--~~~~Ti~~~~~~k~v~~~~~~~i--wDt~G~e~--------~~~~~~~~~~~ 107 (179)
.||+ +|.+||| ++.++.+.... ...+.+..+.....+.++ +..+ |||+|++. +......++++
T Consensus 2 ~~I~ivG~~~vGKStL~n~l~~~~~~~v~~~~~~t~d~~~~~~~~~-~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~~ 80 (435)
T PRK00093 2 PVVAIVGRPNVGKSTLFNRLTGKRDAIVADTPGVTRDRIYGEAEWL-GREFILIDTGGIEPDDDGFEKQIREQAELAIEE 80 (435)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCceeeCCCCCCcccceEEEEEEC-CcEEEEEECCCCCCcchhHHHHHHHHHHHHHHh
Confidence 4786 9999999 55555533211 112222234445567777 7666 99999987 33345567899
Q ss_pred CcEEEEEEeCCChhhHH--HHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCC
Q psy15036 108 TMGFLLIFDVTNENSFK--DVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQR 160 (179)
Q Consensus 108 ~~~vilvyDit~~~Sf~--~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~ 160 (179)
+|++++|+|.++..+.. .+..|+... + .|+++|+||+|+.+
T Consensus 81 ad~il~vvd~~~~~~~~~~~~~~~l~~~------~------~piilv~NK~D~~~ 123 (435)
T PRK00093 81 ADVILFVVDGRAGLTPADEEIAKILRKS------N------KPVILVVNKVDGPD 123 (435)
T ss_pred CCEEEEEEECCCCCCHHHHHHHHHHHHc------C------CcEEEEEECccCcc
Confidence 99999999998854433 334454321 2 58889999999754
No 175
>COG2229 Predicted GTPase [General function prediction only]
Probab=99.03 E-value=5.1e-09 Score=78.65 Aligned_cols=119 Identities=17% Similarity=0.125 Sum_probs=82.5
Q ss_pred eeeEEE-EeCCCCc---eeEeeeccC---------CC----cccCcceeeeeEEEEEecCCCee--eeCCCchhchhhhh
Q psy15036 42 FNFGTQ-LGRRGIP---LLKHLKYLG---------TG----THGKTVGIVFPAISVTYSIGPRY--FRFPLVSRFLSLTT 102 (179)
Q Consensus 42 ~~~Kiv-lG~~gvG---~~~~~~~~~---------~~----~~~~Ti~~~~~~k~v~~~~~~~i--wDt~G~e~~~~~~~ 102 (179)
...||+ +|.-++| .++.+.... .. ....|+..+|. .+.++.+..+ +||+||+||..++.
T Consensus 9 ~~~KIvv~G~~~agKtTfv~~~s~k~~v~t~~~~~~~s~k~kr~tTva~D~g--~~~~~~~~~v~LfgtPGq~RF~fm~~ 86 (187)
T COG2229 9 IETKIVVIGPVGAGKTTFVRALSDKPLVITEADASSVSGKGKRPTTVAMDFG--SIELDEDTGVHLFGTPGQERFKFMWE 86 (187)
T ss_pred cceeEEEEcccccchhhHHHHhhccccceeeccccccccccccceeEeeccc--ceEEcCcceEEEecCCCcHHHHHHHH
Confidence 457897 9999999 222222111 11 22356777775 3444513555 99999999999999
Q ss_pred hhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCCCCCCCHHHHHHHH
Q psy15036 103 GLYRGTMGFLLIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQRCREVVTPDQIMFG 173 (179)
Q Consensus 103 ~~~~~~~~vilvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~~r~Vs~~e~~~~a 173 (179)
.+.+++.++|++.|-+....| .....++.+....+ +|+++..||.||.+ .-+.++.+++-
T Consensus 87 ~l~~ga~gaivlVDss~~~~~-~a~~ii~f~~~~~~--------ip~vVa~NK~DL~~--a~ppe~i~e~l 146 (187)
T COG2229 87 ILSRGAVGAIVLVDSSRPITF-HAEEIIDFLTSRNP--------IPVVVAINKQDLFD--ALPPEKIREAL 146 (187)
T ss_pred HHhCCcceEEEEEecCCCcch-HHHHHHHHHhhccC--------CCEEEEeeccccCC--CCCHHHHHHHH
Confidence 999999999999999999999 44455544443322 57888899999987 55555555543
No 176
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=99.03 E-value=4.8e-10 Score=89.15 Aligned_cols=71 Identities=8% Similarity=0.035 Sum_probs=59.1
Q ss_pred hhchhhhhhhhcCCcEEEEEEeCCChh-hHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCCCCCCCHHHHHHHH
Q psy15036 95 SRFLSLTTGLYRGTMGFLLIFDVTNEN-SFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQRCREVVTPDQIMFG 173 (179)
Q Consensus 95 e~~~~~~~~~~~~~~~vilvyDit~~~-Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~~r~Vs~~e~~~~a 173 (179)
++|..+.+.+++++|++++|||+++++ ||+.+.+|+..+.. .+ +|++||+||+||.+++++..++++.++
T Consensus 24 eR~~~L~r~~~~n~D~viiV~d~~~p~~s~~~l~r~l~~~~~---~~------i~~vIV~NK~DL~~~~~~~~~~~~~~~ 94 (245)
T TIGR00157 24 ERKNELTRPIVANIDQIVIVSSAVLPELSLNQLDRFLVVAEA---QN------IEPIIVLNKIDLLDDEDMEKEQLDIYR 94 (245)
T ss_pred cccceEECcccccCCEEEEEEECCCCCCCHHHHHHHHHHHHH---CC------CCEEEEEECcccCCCHHHHHHHHHHHH
Confidence 788889999999999999999999887 99999999987653 22 577889999999776777666666665
Q ss_pred h
Q psy15036 174 S 174 (179)
Q Consensus 174 ~ 174 (179)
+
T Consensus 95 ~ 95 (245)
T TIGR00157 95 N 95 (245)
T ss_pred H
Confidence 4
No 177
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.02 E-value=1.8e-09 Score=91.91 Aligned_cols=106 Identities=16% Similarity=0.020 Sum_probs=69.4
Q ss_pred eeeEEE-EeCCCCc---eeEeeeccC---CCcccCcceeeeeEEEEEecCCCee--eeCCCchhchhh----------h-
Q psy15036 42 FNFGTQ-LGRRGIP---LLKHLKYLG---TGTHGKTVGIVFPAISVTYSIGPRY--FRFPLVSRFLSL----------T- 101 (179)
Q Consensus 42 ~~~Kiv-lG~~gvG---~~~~~~~~~---~~~~~~Ti~~~~~~k~v~~~~~~~i--wDt~G~e~~~~~----------~- 101 (179)
..+||+ +|..++| ++..+.+.. ...+..|. .+.....+..+ +..+ |||+|..++... .
T Consensus 171 ~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~~~~gtt-~~~~~~~~~~~-~~~~~liDT~G~~~~~~~~~~~e~~~~~~~ 248 (429)
T TIGR03594 171 GPIKIAIIGRPNVGKSTLVNALLGEERVIVSDIAGTT-RDSIDIPFERN-GKKYLLIDTAGIRRKGKVTEGVEKYSVLRT 248 (429)
T ss_pred CceEEEEECCCCCCHHHHHHHHHCCCeeecCCCCCce-ECcEeEEEEEC-CcEEEEEECCCccccccchhhHHHHHHHHH
Confidence 458997 9999999 555554321 12222222 23333455667 7776 999997554322 1
Q ss_pred hhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcC
Q psy15036 102 TGLYRGTMGFLLIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQ 159 (179)
Q Consensus 102 ~~~~~~~~~vilvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~ 159 (179)
..+++.+|++|+|+|.++..+..... ++..+.+ .. .|+++|+||+|+.
T Consensus 249 ~~~~~~ad~~ilV~D~~~~~~~~~~~-~~~~~~~---~~------~~iiiv~NK~Dl~ 296 (429)
T TIGR03594 249 LKAIERADVVLLVLDATEGITEQDLR-IAGLILE---AG------KALVIVVNKWDLV 296 (429)
T ss_pred HHHHHhCCEEEEEEECCCCccHHHHH-HHHHHHH---cC------CcEEEEEECcccC
Confidence 34689999999999999988877654 3333332 12 4788999999996
No 178
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.01 E-value=7.8e-10 Score=80.48 Aligned_cols=103 Identities=10% Similarity=-0.092 Sum_probs=64.6
Q ss_pred EEeCCCCc---eeEeeecc---CCCcccCcceeeeeEEEEEecCCCee--eeCCCchhchh--------hhhhhhcCCcE
Q psy15036 47 QLGRRGIP---LLKHLKYL---GTGTHGKTVGIVFPAISVTYSIGPRY--FRFPLVSRFLS--------LTTGLYRGTMG 110 (179)
Q Consensus 47 vlG~~gvG---~~~~~~~~---~~~~~~~Ti~~~~~~k~v~~~~~~~i--wDt~G~e~~~~--------~~~~~~~~~~~ 110 (179)
++|..||| ++..+... +.+.+.++ ..+...+.+..+ +..+ |||+|.+.+.. ....+++.+|+
T Consensus 2 l~G~~~~GKssl~~~l~~~~~~~~~~~~~~-t~~~~~~~~~~~-~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~d~ 79 (157)
T cd01894 2 IVGRPNVGKSTLFNRLTGRRDAIVEDTPGV-TRDRIYGEAEWG-GREFILIDTGGIEPDDEGISKEIREQAELAIEEADV 79 (157)
T ss_pred ccCCCCCCHHHHHHHHhCCcEEeecCCCCc-eeCceeEEEEEC-CeEEEEEECCCCCCchhHHHHHHHHHHHHHHHhCCE
Confidence 48999999 54444422 12222222 223344556666 6666 99999987643 33456889999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCCC
Q psy15036 111 FLLIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQRC 161 (179)
Q Consensus 111 vilvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~~ 161 (179)
+++|+|.++..+..... ....+++. . .|+++|+||+|+.+.
T Consensus 80 ii~v~d~~~~~~~~~~~-~~~~~~~~---~------~piiiv~nK~D~~~~ 120 (157)
T cd01894 80 ILFVVDGREGLTPADEE-IAKYLRKS---K------KPVILVVNKVDNIKE 120 (157)
T ss_pred EEEEEeccccCCccHHH-HHHHHHhc---C------CCEEEEEECcccCCh
Confidence 99999998765554431 22222221 2 578899999999764
No 179
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=99.00 E-value=1.8e-09 Score=80.97 Aligned_cols=72 Identities=11% Similarity=-0.024 Sum_probs=53.5
Q ss_pred EEEEecCCCee--eeCCCchhchhhhhhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeC
Q psy15036 78 ISVTYSIGPRY--FRFPLVSRFLSLTTGLYRGTMGFLLIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCL 155 (179)
Q Consensus 78 k~v~~~~~~~i--wDt~G~e~~~~~~~~~~~~~~~vilvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK 155 (179)
..+... +..+ ||++|+.++......+++.+|++++|+|.++..+... ..++..+.. .. .|+++|+||
T Consensus 55 ~~~~~~-~~~~~liDtpG~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~-~~~~~~~~~---~~------~~i~iv~nK 123 (189)
T cd00881 55 ATFEWP-DRRVNFIDTPGHEDFSSEVIRGLSVSDGAILVVDANEGVQPQT-REHLRIARE---GG------LPIIVAINK 123 (189)
T ss_pred EEEeeC-CEEEEEEeCCCcHHHHHHHHHHHHhcCEEEEEEECCCCCcHHH-HHHHHHHHH---CC------CCeEEEEEC
Confidence 344444 4445 9999999998889999999999999999988765543 334444443 22 578899999
Q ss_pred CCcCC
Q psy15036 156 ELLQR 160 (179)
Q Consensus 156 ~Dl~~ 160 (179)
+|+..
T Consensus 124 ~D~~~ 128 (189)
T cd00881 124 IDRVG 128 (189)
T ss_pred CCCcc
Confidence 99965
No 180
>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha. This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.
Probab=98.99 E-value=1.5e-09 Score=92.68 Aligned_cols=98 Identities=8% Similarity=-0.100 Sum_probs=63.1
Q ss_pred cceeeeeEEEEEecCCCee--eeCCCchhchhhhhhhhcCCcEEEEEEeCCChhhHHHHHHHHHH--HHHHhCCccCccc
Q psy15036 70 TVGIVFPAISVTYSIGPRY--FRFPLVSRFLSLTTGLYRGTMGFLLIFDVTNENSFKDVEKWLLQ--IKVMDGALFTHFE 145 (179)
Q Consensus 70 Ti~~~~~~k~v~~~~~~~i--wDt~G~e~~~~~~~~~~~~~~~vilvyDit~~~Sf~~l~~w~~~--i~~~~~~~~~~~~ 145 (179)
.+..+.....+..+ +..+ ||++|+++|.......++.+|++++|+|.++.+++... .+.+. +.+....
T Consensus 70 g~Tid~~~~~~~~~-~~~i~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~~~~~~~~-~t~~~~~~~~~~~~------ 141 (426)
T TIGR00483 70 GVTIDVAHWKFETD-KYEVTIVDCPGHRDFIKNMITGASQADAAVLVVAVGDGEFEVQP-QTREHAFLARTLGI------ 141 (426)
T ss_pred CceEEEEEEEEccC-CeEEEEEECCCHHHHHHHHHhhhhhCCEEEEEEECCCCCcccCC-chHHHHHHHHHcCC------
Confidence 33344444556666 6556 99999999876666678899999999999998765322 22222 2222222
Q ss_pred cceEEEEeeCCCcCCCCC----CCHHHHHHHHhhh
Q psy15036 146 LQIVFMRGCLELLQRCRE----VVTPDQIMFGSTQ 176 (179)
Q Consensus 146 ~~~iilvGnK~Dl~~~r~----Vs~~e~~~~a~~~ 176 (179)
+++++|+||+|+.+... ...++.++++++.
T Consensus 142 -~~iIVviNK~Dl~~~~~~~~~~~~~ei~~~~~~~ 175 (426)
T TIGR00483 142 -NQLIVAINKMDSVNYDEEEFEAIKKEVSNLIKKV 175 (426)
T ss_pred -CeEEEEEEChhccCccHHHHHHHHHHHHHHHHHc
Confidence 57888999999964211 2245666666554
No 181
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=98.98 E-value=2.3e-09 Score=81.44 Aligned_cols=110 Identities=14% Similarity=0.047 Sum_probs=67.9
Q ss_pred cCceeeEEE-EeCCCCc---eeEeeecc-CCCcccCcceeeeeEEEEEecCCCee--eeCCC----------chhchhhh
Q psy15036 39 EFSFNFGTQ-LGRRGIP---LLKHLKYL-GTGTHGKTVGIVFPAISVTYSIGPRY--FRFPL----------VSRFLSLT 101 (179)
Q Consensus 39 ~~~~~~Kiv-lG~~gvG---~~~~~~~~-~~~~~~~Ti~~~~~~k~v~~~~~~~i--wDt~G----------~e~~~~~~ 101 (179)
..+...||+ +|+.|+| ++..+... +...+.++.|.+.....+.++ ..+ |||+| ++++..+.
T Consensus 20 ~~~~~~~v~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~~--~~l~l~DtpG~~~~~~~~~~~~~~~~~~ 97 (196)
T PRK00454 20 PPDDGPEIAFAGRSNVGKSSLINALTNRKNLARTSKTPGRTQLINFFEVN--DKLRLVDLPGYGYAKVSKEEKEKWQKLI 97 (196)
T ss_pred CCCCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCceeEEEEEecC--CeEEEeCCCCCCCcCCCchHHHHHHHHH
Confidence 444678897 9999999 66665543 345556666644332223323 334 99999 35666666
Q ss_pred hhhhcCC---cEEEEEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCC
Q psy15036 102 TGLYRGT---MGFLLIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQR 160 (179)
Q Consensus 102 ~~~~~~~---~~vilvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~ 160 (179)
..|++.+ +++++|+|.+++.+.... ++....+. .. .|+++++||+|+.+
T Consensus 98 ~~~~~~~~~~~~~~~v~d~~~~~~~~~~--~i~~~l~~--~~------~~~iiv~nK~Dl~~ 149 (196)
T PRK00454 98 EEYLRTRENLKGVVLLIDSRHPLKELDL--QMIEWLKE--YG------IPVLIVLTKADKLK 149 (196)
T ss_pred HHHHHhCccceEEEEEEecCCCCCHHHH--HHHHHHHH--cC------CcEEEEEECcccCC
Confidence 7777765 578888898876554331 21111111 12 46788899999854
No 182
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=98.97 E-value=2.6e-09 Score=82.94 Aligned_cols=61 Identities=13% Similarity=0.042 Sum_probs=48.5
Q ss_pred eeCCCchhchhhhhhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcC
Q psy15036 89 FRFPLVSRFLSLTTGLYRGTMGFLLIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQ 159 (179)
Q Consensus 89 wDt~G~e~~~~~~~~~~~~~~~vilvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~ 159 (179)
|||+|+++|......+++.+|++++|+|.++..++.. ..|+..+... . .|+++|+||+|+.
T Consensus 76 iDtpG~~~f~~~~~~~~~~aD~~llVvD~~~~~~~~~-~~~~~~~~~~---~------~p~iiviNK~D~~ 136 (213)
T cd04167 76 IDTPGHVNFMDEVAAALRLSDGVVLVVDVVEGVTSNT-ERLIRHAILE---G------LPIVLVINKIDRL 136 (213)
T ss_pred EECCCCcchHHHHHHHHHhCCEEEEEEECCCCCCHHH-HHHHHHHHHc---C------CCEEEEEECcccC
Confidence 9999999998888899999999999999998777643 3454444321 2 4788899999974
No 183
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=98.94 E-value=2.8e-09 Score=96.70 Aligned_cols=105 Identities=10% Similarity=-0.001 Sum_probs=70.5
Q ss_pred eeeEEE-EeCCCCc---eeEeee-ccCCCcccCcceeeeeEEEEEecCCCee--eeCCCchhchhhhhhhhcCCcEEEEE
Q psy15036 42 FNFGTQ-LGRRGIP---LLKHLK-YLGTGTHGKTVGIVFPAISVTYSIGPRY--FRFPLVSRFLSLTTGLYRGTMGFLLI 114 (179)
Q Consensus 42 ~~~Kiv-lG~~gvG---~~~~~~-~~~~~~~~~Ti~~~~~~k~v~~~~~~~i--wDt~G~e~~~~~~~~~~~~~~~vilv 114 (179)
..-.|+ +|..++| ++..+. ..+.....+.+..+.....+.++ +..+ |||+|++.|..++...++.+|++|||
T Consensus 289 R~pvV~ImGhvd~GKTSLl~~Lr~~~v~~~e~~GIT~~iga~~v~~~-~~~ItfiDTPGhe~F~~m~~rga~~aDiaILV 367 (787)
T PRK05306 289 RPPVVTIMGHVDHGKTSLLDAIRKTNVAAGEAGGITQHIGAYQVETN-GGKITFLDTPGHEAFTAMRARGAQVTDIVVLV 367 (787)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhCCccccccCceeeeccEEEEEEC-CEEEEEEECCCCccchhHHHhhhhhCCEEEEE
Confidence 345565 9999999 554443 22222222222222323456666 6666 99999999999999999999999999
Q ss_pred EeCCC---hhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCC
Q psy15036 115 FDVTN---ENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQR 160 (179)
Q Consensus 115 yDit~---~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~ 160 (179)
||.++ +++++.+. .....+ .|+|+++||+|+.+
T Consensus 368 VdAddGv~~qT~e~i~-------~a~~~~------vPiIVviNKiDl~~ 403 (787)
T PRK05306 368 VAADDGVMPQTIEAIN-------HAKAAG------VPIIVAINKIDKPG 403 (787)
T ss_pred EECCCCCCHhHHHHHH-------HHHhcC------CcEEEEEECccccc
Confidence 99987 55555432 111222 57889999999954
No 184
>cd01889 SelB_euk SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk
Probab=98.93 E-value=4e-09 Score=80.38 Aligned_cols=107 Identities=17% Similarity=0.064 Sum_probs=61.6
Q ss_pred eEEE-EeCCCCc---eeEeeecc-----CCC-----cccCcceeeeeEEEEEe----------c-CCCee--eeCCCchh
Q psy15036 44 FGTQ-LGRRGIP---LLKHLKYL-----GTG-----THGKTVGIVFPAISVTY----------S-IGPRY--FRFPLVSR 96 (179)
Q Consensus 44 ~Kiv-lG~~gvG---~~~~~~~~-----~~~-----~~~~Ti~~~~~~k~v~~----------~-~~~~i--wDt~G~e~ 96 (179)
++|+ +|+.++| ++..+... +.. ....|++..+....+.. . .+..+ |||+|+..
T Consensus 1 ~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~~~~e~~~g~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~ 80 (192)
T cd01889 1 VNVGVLGHVDSGKTSLAKALSEIASTAAFDKNPQSQERGITLDLGFSSFYVDKPKHLRELINPGEENLQITLVDCPGHAS 80 (192)
T ss_pred CeEEEEecCCCCHHHHHHHHHhccchhhhccCHHHHHcCCeeeecceEEEecccccccccccccccCceEEEEECCCcHH
Confidence 4686 9999999 44444321 111 11346665554444431 1 02233 99999976
Q ss_pred chhhhhhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCC
Q psy15036 97 FLSLTTGLYRGTMGFLLIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQR 160 (179)
Q Consensus 97 ~~~~~~~~~~~~~~vilvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~ 160 (179)
+........+.+|++++|+|.++..+......|. +.... . .|+++|+||+|+..
T Consensus 81 ~~~~~~~~~~~~d~vi~VvD~~~~~~~~~~~~~~--~~~~~--~------~~~iiv~NK~Dl~~ 134 (192)
T cd01889 81 LIRTIIGGAQIIDLMLLVVDATKGIQTQTAECLV--IGEIL--C------KKLIVVLNKIDLIP 134 (192)
T ss_pred HHHHHHHHHhhCCEEEEEEECCCCccHHHHHHHH--HHHHc--C------CCEEEEEECcccCC
Confidence 5333223345678999999998854444333332 12221 2 46778899999863
No 185
>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2. This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.
Probab=98.91 E-value=4e-09 Score=93.23 Aligned_cols=59 Identities=10% Similarity=-0.055 Sum_probs=49.2
Q ss_pred eeCCCchhchhhhhhhhcCCcEEEEEEeCCC---hhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCC
Q psy15036 89 FRFPLVSRFLSLTTGLYRGTMGFLLIFDVTN---ENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQR 160 (179)
Q Consensus 89 wDt~G~e~~~~~~~~~~~~~~~vilvyDit~---~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~ 160 (179)
|||+|++.|..++..+++.+|++++|||.++ +++++.+..+ +. .+ .|+++++||+|+..
T Consensus 74 iDTpG~e~f~~l~~~~~~~aD~~IlVvD~~~g~~~qt~e~i~~l----~~---~~------vpiIVv~NK~Dl~~ 135 (590)
T TIGR00491 74 IDTPGHEAFTNLRKRGGALADLAILIVDINEGFKPQTQEALNIL----RM---YK------TPFVVAANKIDRIP 135 (590)
T ss_pred EECCCcHhHHHHHHHHHhhCCEEEEEEECCcCCCHhHHHHHHHH----HH---cC------CCEEEEEECCCccc
Confidence 9999999999999999999999999999997 7777776533 11 12 47889999999964
No 186
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=98.90 E-value=5.2e-09 Score=94.66 Aligned_cols=106 Identities=16% Similarity=0.033 Sum_probs=72.3
Q ss_pred eeEEE-EeCCCCc---eeEeeeccC---CCcccCcceeeeeEEEEEecCCCee--eeCCCch----------hchhhh-h
Q psy15036 43 NFGTQ-LGRRGIP---LLKHLKYLG---TGTHGKTVGIVFPAISVTYSIGPRY--FRFPLVS----------RFLSLT-T 102 (179)
Q Consensus 43 ~~Kiv-lG~~gvG---~~~~~~~~~---~~~~~~Ti~~~~~~k~v~~~~~~~i--wDt~G~e----------~~~~~~-~ 102 (179)
..||+ +|.++|| ++..+.+.. ...+.+| ..+.....+.++ +..+ |||+|.. .|..++ .
T Consensus 450 ~~kI~ivG~~nvGKSSLin~l~~~~~~~v~~~~gt-T~d~~~~~~~~~-~~~~~liDTaG~~~~~~~~~~~e~~~~~r~~ 527 (712)
T PRK09518 450 LRRVALVGRPNVGKSSLLNQLTHEERAVVNDLAGT-TRDPVDEIVEID-GEDWLFIDTAGIKRRQHKLTGAEYYSSLRTQ 527 (712)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCccccccCCCCCC-CcCcceeEEEEC-CCEEEEEECCCcccCcccchhHHHHHHHHHH
Confidence 57997 9999999 555555321 2233333 234445567778 8887 9999953 333333 3
Q ss_pred hhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCC
Q psy15036 103 GLYRGTMGFLLIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQR 160 (179)
Q Consensus 103 ~~~~~~~~vilvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~ 160 (179)
..++.+|++++|+|.++..+++.+..| ..+.+ .+ .|+++|+||+||.+
T Consensus 528 ~~i~~advvilViDat~~~s~~~~~i~-~~~~~---~~------~piIiV~NK~DL~~ 575 (712)
T PRK09518 528 AAIERSELALFLFDASQPISEQDLKVM-SMAVD---AG------RALVLVFNKWDLMD 575 (712)
T ss_pred HHhhcCCEEEEEEECCCCCCHHHHHHH-HHHHH---cC------CCEEEEEEchhcCC
Confidence 457899999999999999998887643 33332 22 47889999999964
No 187
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=98.90 E-value=7.1e-09 Score=88.32 Aligned_cols=105 Identities=12% Similarity=0.079 Sum_probs=67.9
Q ss_pred EEE-EeCCCCc---eeEeeeccCCCccc--CcceeeeeEEEEEecCCCee--eeCCCc--------hhchhhhhhhhcCC
Q psy15036 45 GTQ-LGRRGIP---LLKHLKYLGTGTHG--KTVGIVFPAISVTYSIGPRY--FRFPLV--------SRFLSLTTGLYRGT 108 (179)
Q Consensus 45 Kiv-lG~~gvG---~~~~~~~~~~~~~~--~Ti~~~~~~k~v~~~~~~~i--wDt~G~--------e~~~~~~~~~~~~~ 108 (179)
||+ +|.++|| ++.++.+....... +.+..+.....+..+ +..+ |||+|. +.+......+++.+
T Consensus 1 ~i~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~t~d~~~~~~~~~-~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~a 79 (429)
T TIGR03594 1 VVAIVGRPNVGKSTLFNRLTGKRDAIVSDTPGVTRDRKYGDAEWG-GREFILIDTGGIEEDDDGLDKQIREQAEIAIEEA 79 (429)
T ss_pred CEEEECCCCCCHHHHHHHHhCCCcceecCCCCcccCceEEEEEEC-CeEEEEEECCCCCCcchhHHHHHHHHHHHHHhhC
Confidence 465 9999999 55555543221112 222223334556667 7777 999996 45556677789999
Q ss_pred cEEEEEEeCCChhhHHH--HHHHHHHHHHHhCCccCccccceEEEEeeCCCcCCCC
Q psy15036 109 MGFLLIFDVTNENSFKD--VEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQRCR 162 (179)
Q Consensus 109 ~~vilvyDit~~~Sf~~--l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~~r 162 (179)
|++++|+|.++.-+... +..|+ ++. . .|+++|+||+|+.+.+
T Consensus 80 d~vl~vvD~~~~~~~~d~~i~~~l---~~~--~-------~piilVvNK~D~~~~~ 123 (429)
T TIGR03594 80 DVILFVVDGREGLTPEDEEIAKWL---RKS--G-------KPVILVANKIDGKKED 123 (429)
T ss_pred CEEEEEEeCCCCCCHHHHHHHHHH---HHh--C-------CCEEEEEECccCCccc
Confidence 99999999987544333 23333 321 2 4788999999986543
No 188
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=98.90 E-value=8.3e-09 Score=83.02 Aligned_cols=103 Identities=17% Similarity=0.021 Sum_probs=63.7
Q ss_pred EEE-EeCCCCc---eeEeeeccCC---CcccCcceeeeeEEEEEecCCCee--eeCCCchhch-h-------hhhhhhcC
Q psy15036 45 GTQ-LGRRGIP---LLKHLKYLGT---GTHGKTVGIVFPAISVTYSIGPRY--FRFPLVSRFL-S-------LTTGLYRG 107 (179)
Q Consensus 45 Kiv-lG~~gvG---~~~~~~~~~~---~~~~~Ti~~~~~~k~v~~~~~~~i--wDt~G~e~~~-~-------~~~~~~~~ 107 (179)
+|+ +|.++|| +++.+.+... +....|..... ......+ +.++ |||+|..... . ....++++
T Consensus 2 ~V~liG~pnvGKSTLln~L~~~~~~~vs~~~~TTr~~i-~~i~~~~-~~qii~vDTPG~~~~~~~l~~~~~~~~~~~l~~ 79 (270)
T TIGR00436 2 FVAILGRPNVGKSTLLNQLHGQKISITSPKAQTTRNRI-SGIHTTG-ASQIIFIDTPGFHEKKHSLNRLMMKEARSAIGG 79 (270)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcEeecCCCCCcccCcE-EEEEEcC-CcEEEEEECcCCCCCcchHHHHHHHHHHHHHhh
Confidence 565 9999999 6666554321 12222322111 1222334 4455 9999975421 1 13456789
Q ss_pred CcEEEEEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCC
Q psy15036 108 TMGFLLIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQR 160 (179)
Q Consensus 108 ~~~vilvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~ 160 (179)
+|++++|+|.++..+++ ..++..+.. .+ .|+++|+||+|+..
T Consensus 80 aDvvl~VvD~~~~~~~~--~~i~~~l~~---~~------~p~ilV~NK~Dl~~ 121 (270)
T TIGR00436 80 VDLILFVVDSDQWNGDG--EFVLTKLQN---LK------RPVVLTRNKLDNKF 121 (270)
T ss_pred CCEEEEEEECCCCCchH--HHHHHHHHh---cC------CCEEEEEECeeCCC
Confidence 99999999999987775 444444433 12 57889999999964
No 189
>CHL00189 infB translation initiation factor 2; Provisional
Probab=98.89 E-value=5.6e-09 Score=94.10 Aligned_cols=106 Identities=13% Similarity=0.002 Sum_probs=69.3
Q ss_pred eeeEEE-EeCCCCc---eeEeee-ccCCCccc--CcceeeeeEEEEEec-CCCee--eeCCCchhchhhhhhhhcCCcEE
Q psy15036 42 FNFGTQ-LGRRGIP---LLKHLK-YLGTGTHG--KTVGIVFPAISVTYS-IGPRY--FRFPLVSRFLSLTTGLYRGTMGF 111 (179)
Q Consensus 42 ~~~Kiv-lG~~gvG---~~~~~~-~~~~~~~~--~Ti~~~~~~k~v~~~-~~~~i--wDt~G~e~~~~~~~~~~~~~~~v 111 (179)
...+|+ +|..++| ++..+. ..+..... .|.....+...+..+ .+..+ |||+|++.|..++..+++.+|++
T Consensus 243 r~p~V~IvGhvdvGKTSLld~L~~~~~~~~e~~GiTq~i~~~~v~~~~~~~~~kItfiDTPGhe~F~~mr~rg~~~aDia 322 (742)
T CHL00189 243 RPPIVTILGHVDHGKTTLLDKIRKTQIAQKEAGGITQKIGAYEVEFEYKDENQKIVFLDTPGHEAFSSMRSRGANVTDIA 322 (742)
T ss_pred cCCEEEEECCCCCCHHHHHHHHHhccCccccCCccccccceEEEEEEecCCceEEEEEECCcHHHHHHHHHHHHHHCCEE
Confidence 345676 9999999 554444 22222222 232222333333333 02444 99999999999999999999999
Q ss_pred EEEEeCCC---hhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCC
Q psy15036 112 LLIFDVTN---ENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQR 160 (179)
Q Consensus 112 ilvyDit~---~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~ 160 (179)
|+|+|.++ +++++.+..+ .... .|+|+++||+|+.+
T Consensus 323 ILVVDA~dGv~~QT~E~I~~~-------k~~~------iPiIVViNKiDl~~ 361 (742)
T CHL00189 323 ILIIAADDGVKPQTIEAINYI-------QAAN------VPIIVAINKIDKAN 361 (742)
T ss_pred EEEEECcCCCChhhHHHHHHH-------HhcC------ceEEEEEECCCccc
Confidence 99999887 4566554332 1122 57889999999965
No 190
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=98.86 E-value=1.3e-08 Score=74.08 Aligned_cols=118 Identities=14% Similarity=-0.020 Sum_probs=64.3
Q ss_pred eeEEE-EeCCCCc---eeEeeeccCCC---cccCcceeeeeEEEEEecCCCee--eeCCCchhchh--------hhhhhh
Q psy15036 43 NFGTQ-LGRRGIP---LLKHLKYLGTG---THGKTVGIVFPAISVTYSIGPRY--FRFPLVSRFLS--------LTTGLY 105 (179)
Q Consensus 43 ~~Kiv-lG~~gvG---~~~~~~~~~~~---~~~~Ti~~~~~~k~v~~~~~~~i--wDt~G~e~~~~--------~~~~~~ 105 (179)
..+|+ +|..|+| ++..+.+.... ....+.. .......... +..+ |||+|...... .....+
T Consensus 3 ~~~i~~~G~~g~GKttl~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~-~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~ 80 (168)
T cd04163 3 SGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTR-NRIRGIYTDD-DAQIIFVDTPGIHKPKKKLGERMVKAAWSAL 80 (168)
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCceEeccCCCCcee-ceEEEEEEcC-CeEEEEEECCCCCcchHHHHHHHHHHHHHHH
Confidence 46786 9999999 44444432111 1111111 1111112222 3444 99999754332 334568
Q ss_pred cCCcEEEEEEeCCChhhHHHHH-HHHHHHHHHhCCccCccccceEEEEeeCCCcCCCCCCCHHHHHHHH
Q psy15036 106 RGTMGFLLIFDVTNENSFKDVE-KWLLQIKVMDGALFTHFELQIVFMRGCLELLQRCREVVTPDQIMFG 173 (179)
Q Consensus 106 ~~~~~vilvyDit~~~Sf~~l~-~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~~r~Vs~~e~~~~a 173 (179)
..+|++++|+|.++. +.... .+...+... . .|+++|+||+|+........+....++
T Consensus 81 ~~~d~i~~v~d~~~~--~~~~~~~~~~~~~~~---~------~~~iiv~nK~Dl~~~~~~~~~~~~~~~ 138 (168)
T cd04163 81 KDVDLVLFVVDASEP--IGEGDEFILELLKKS---K------TPVILVLNKIDLVKDKEDLLPLLEKLK 138 (168)
T ss_pred HhCCEEEEEEECCCc--cCchHHHHHHHHHHh---C------CCEEEEEEchhccccHHHHHHHHHHHH
Confidence 899999999999987 22222 233333332 2 477888999999743333333333333
No 191
>PRK12297 obgE GTPase CgtA; Reviewed
Probab=98.85 E-value=2.8e-08 Score=84.72 Aligned_cols=121 Identities=15% Similarity=0.109 Sum_probs=75.3
Q ss_pred EEE-EeCCCCc---eeEeeeccCC--Cccc-CcceeeeeEEEEEecCCCee--eeCCCch----hchhhhhhhhcC---C
Q psy15036 45 GTQ-LGRRGIP---LLKHLKYLGT--GTHG-KTVGIVFPAISVTYSIGPRY--FRFPLVS----RFLSLTTGLYRG---T 108 (179)
Q Consensus 45 Kiv-lG~~gvG---~~~~~~~~~~--~~~~-~Ti~~~~~~k~v~~~~~~~i--wDt~G~e----~~~~~~~~~~~~---~ 108 (179)
.|. +|.++|| +++.+....+ ..|. .|....+. .+.++.+..+ ||++|.. ....+...|+++ +
T Consensus 160 dVglVG~pNaGKSTLLn~Lt~ak~kIa~ypfTTl~PnlG--~v~~~~~~~~~laD~PGliega~~~~gLg~~fLrhier~ 237 (424)
T PRK12297 160 DVGLVGFPNVGKSTLLSVVSNAKPKIANYHFTTLVPNLG--VVETDDGRSFVMADIPGLIEGASEGVGLGHQFLRHIERT 237 (424)
T ss_pred cEEEEcCCCCCHHHHHHHHHcCCCccccCCcceeceEEE--EEEEeCCceEEEEECCCCcccccccchHHHHHHHHHhhC
Confidence 354 9999999 6655553221 1221 23333322 2333313444 9999963 233455666554 8
Q ss_pred cEEEEEEeCCCh---hhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCCCCCCCHHHHHHHHhh
Q psy15036 109 MGFLLIFDVTNE---NSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQRCREVVTPDQIMFGST 175 (179)
Q Consensus 109 ~~vilvyDit~~---~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~~r~Vs~~e~~~~a~~ 175 (179)
+++++|+|+++. ++++++..|.+++..+.... ...|+++|+||+||.+ ..+..+++++.
T Consensus 238 ~llI~VID~s~~~~~dp~e~~~~i~~EL~~y~~~L----~~kP~IVV~NK~DL~~----~~e~l~~l~~~ 299 (424)
T PRK12297 238 RVIVHVIDMSGSEGRDPIEDYEKINKELKLYNPRL----LERPQIVVANKMDLPE----AEENLEEFKEK 299 (424)
T ss_pred CEEEEEEeCCccccCChHHHHHHHHHHHhhhchhc----cCCcEEEEEeCCCCcC----CHHHHHHHHHH
Confidence 999999999865 78999999999998765421 0157888999999843 13445555543
No 192
>KOG0077|consensus
Probab=98.83 E-value=9.6e-09 Score=76.05 Aligned_cols=119 Identities=14% Similarity=0.061 Sum_probs=94.6
Q ss_pred ceeeEEE-EeCCCCc---eeEeeeccCCCcccCcceeeeeEEEEEecCCCee--eeCCCchhchhhhhhhhcCCcEEEEE
Q psy15036 41 SFNFGTQ-LGRRGIP---LLKHLKYLGTGTHGKTVGIVFPAISVTYSIGPRY--FRFPLVSRFLSLTTGLYRGTMGFLLI 114 (179)
Q Consensus 41 ~~~~Kiv-lG~~gvG---~~~~~~~~~~~~~~~Ti~~~~~~k~v~~~~~~~i--wDt~G~e~~~~~~~~~~~~~~~vilv 114 (179)
...-|+| +|-.+.| ++..+.......+.||...+. ..+.+. |-++ +|.+|+..-+..++.|+..+|++++.
T Consensus 18 kK~gKllFlGLDNAGKTTLLHMLKdDrl~qhvPTlHPTS--E~l~Ig-~m~ftt~DLGGH~qArr~wkdyf~~v~~iv~l 94 (193)
T KOG0077|consen 18 KKFGKLLFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTS--EELSIG-GMTFTTFDLGGHLQARRVWKDYFPQVDAIVYL 94 (193)
T ss_pred ccCceEEEEeecCCchhhHHHHHccccccccCCCcCCCh--HHheec-CceEEEEccccHHHHHHHHHHHHhhhceeEee
Confidence 3457898 9999999 777777777778888876543 456777 7777 99999999999999999999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHHHhC-CccCccccceEEEEeeCCCcCCCCCCCHHHHH
Q psy15036 115 FDVTNENSFKDVEKWLLQIKVMDG-ALFTHFELQIVFMRGCLELLQRCREVVTPDQI 170 (179)
Q Consensus 115 yDit~~~Sf~~l~~w~~~i~~~~~-~~~~~~~~~~iilvGnK~Dl~~~r~Vs~~e~~ 170 (179)
+|..+++-|.+.+.-++.+..... .. .|+++.|||+|... ..+++|.+
T Consensus 95 vda~d~er~~es~~eld~ll~~e~la~------vp~lilgnKId~p~--a~se~~l~ 143 (193)
T KOG0077|consen 95 VDAYDQERFAESKKELDALLSDESLAT------VPFLILGNKIDIPY--AASEDELR 143 (193)
T ss_pred eehhhHHHhHHHHHHHHHHHhHHHHhc------CcceeecccccCCC--cccHHHHH
Confidence 999999999998877777654432 22 57777799999865 56665543
No 193
>cd01850 CDC_Septin CDC/Septin. Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.
Probab=98.82 E-value=1.2e-08 Score=82.54 Aligned_cols=123 Identities=11% Similarity=0.027 Sum_probs=67.8
Q ss_pred eeeEEE-EeCCCCc---eeEeeecc-C-CC---------cccCcceeeeeEEEEEecCCCee----eeCCCchhc-----
Q psy15036 42 FNFGTQ-LGRRGIP---LLKHLKYL-G-TG---------THGKTVGIVFPAISVTYSIGPRY----FRFPLVSRF----- 97 (179)
Q Consensus 42 ~~~Kiv-lG~~gvG---~~~~~~~~-~-~~---------~~~~Ti~~~~~~k~v~~~~~~~i----wDt~G~e~~----- 97 (179)
+.|+|+ +|++|+| ++..+... . .. ...+|++.+.....+..+ |..+ |||+|-..+
T Consensus 3 ~~f~I~vvG~sg~GKSTliN~L~~~~~~~~~~~~~~~~~~~~~T~~i~~~~~~i~~~-g~~~~l~iiDTpGfgd~~~~~~ 81 (276)
T cd01850 3 FQFNIMVVGESGLGKSTFINTLFNTKLIPSDYPPDPAEEHIDKTVEIKSSKAEIEEN-GVKLKLTVIDTPGFGDNINNSD 81 (276)
T ss_pred cEEEEEEEcCCCCCHHHHHHHHHcCCCccccCCCCccccccCCceEEEEEEEEEEEC-CEEEEEEEEecCCccccccchh
Confidence 468997 9999999 33333311 1 11 246677766666666666 6544 999994222
Q ss_pred ---------------------hhhhhhhhcC--CcEEEEEEeCCChhhHHHHHHH-HHHHHHHhCCccCccccceEEEEe
Q psy15036 98 ---------------------LSLTTGLYRG--TMGFLLIFDVTNENSFKDVEKW-LLQIKVMDGALFTHFELQIVFMRG 153 (179)
Q Consensus 98 ---------------------~~~~~~~~~~--~~~vilvyDit~~~Sf~~l~~w-~~~i~~~~~~~~~~~~~~~iilvG 153 (179)
...+..++++ +|+++++.+.+.. .+..| ++.++.... . .|+++|+
T Consensus 82 ~~~~i~~yi~~q~~~~l~~e~~~~r~~~~~d~rvh~~ly~i~~~~~----~l~~~D~~~lk~l~~-~------v~vi~Vi 150 (276)
T cd01850 82 CWKPIVDYIDDQFDQYLREESRIKRNPRIPDTRVHACLYFIEPTGH----GLKPLDIEFMKRLSK-R------VNIIPVI 150 (276)
T ss_pred hHHHHHHHHHHHHHHHHHHHhhhcccccCCCCceEEEEEEEeCCCC----CCCHHHHHHHHHHhc-c------CCEEEEE
Confidence 1122234554 5555555555432 22333 333444433 3 5788999
Q ss_pred eCCCcCC--CCCCCHHHHHHHHhhh
Q psy15036 154 CLELLQR--CREVVTPDQIMFGSTQ 176 (179)
Q Consensus 154 nK~Dl~~--~r~Vs~~e~~~~a~~~ 176 (179)
||+|+.. ++....+...+.++.+
T Consensus 151 nK~D~l~~~e~~~~k~~i~~~l~~~ 175 (276)
T cd01850 151 AKADTLTPEELKEFKQRIMEDIEEH 175 (276)
T ss_pred ECCCcCCHHHHHHHHHHHHHHHHHc
Confidence 9999844 2333344444444443
No 194
>PRK04004 translation initiation factor IF-2; Validated
Probab=98.81 E-value=1.3e-08 Score=90.03 Aligned_cols=101 Identities=15% Similarity=0.082 Sum_probs=68.4
Q ss_pred EEE-EeCCCCc---eeEeeeccCC-----CcccCcceeeeeEEEE----------------EecCCCeeeeCCCchhchh
Q psy15036 45 GTQ-LGRRGIP---LLKHLKYLGT-----GTHGKTVGIVFPAISV----------------TYSIGPRYFRFPLVSRFLS 99 (179)
Q Consensus 45 Kiv-lG~~gvG---~~~~~~~~~~-----~~~~~Ti~~~~~~k~v----------------~~~~~~~iwDt~G~e~~~~ 99 (179)
.|. +|..++| ++..+.+.+. ..+.+++|..+..... .+. +-.+|||+|++.|..
T Consensus 8 ~V~i~Gh~~~GKTSLl~~l~~~~v~~~~~g~itq~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~-~i~~iDTPG~e~f~~ 86 (586)
T PRK04004 8 IVVVLGHVDHGKTTLLDKIRGTAVAAKEAGGITQHIGATEVPIDVIEKIAGPLKKPLPIKLKIP-GLLFIDTPGHEAFTN 86 (586)
T ss_pred EEEEECCCCCCHHHHHHHHhCcccccCCCCceEEeeceeeccccccccccceeccccccccccC-CEEEEECCChHHHHH
Confidence 355 9999999 5555543322 2233456544321110 111 112399999999999
Q ss_pred hhhhhhcCCcEEEEEEeCCC---hhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcC
Q psy15036 100 LTTGLYRGTMGFLLIFDVTN---ENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQ 159 (179)
Q Consensus 100 ~~~~~~~~~~~vilvyDit~---~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~ 159 (179)
++...++.+|++++|+|.++ +++++.+..+ .. .+ .|+++++||+|+.
T Consensus 87 ~~~~~~~~aD~~IlVvDa~~g~~~qt~e~i~~~----~~---~~------vpiIvviNK~D~~ 136 (586)
T PRK04004 87 LRKRGGALADIAILVVDINEGFQPQTIEAINIL----KR---RK------TPFVVAANKIDRI 136 (586)
T ss_pred HHHHhHhhCCEEEEEEECCCCCCHhHHHHHHHH----HH---cC------CCEEEEEECcCCc
Confidence 99989999999999999998 7888877543 11 22 5688999999985
No 195
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=98.80 E-value=2.4e-08 Score=90.43 Aligned_cols=106 Identities=11% Similarity=0.002 Sum_probs=68.4
Q ss_pred eeEEE-EeCCCCc---eeEeeeccCCCcccCccee--eeeEEEEEecCCCee--eeCCCchh--------chhhhhhhhc
Q psy15036 43 NFGTQ-LGRRGIP---LLKHLKYLGTGTHGKTVGI--VFPAISVTYSIGPRY--FRFPLVSR--------FLSLTTGLYR 106 (179)
Q Consensus 43 ~~Kiv-lG~~gvG---~~~~~~~~~~~~~~~Ti~~--~~~~k~v~~~~~~~i--wDt~G~e~--------~~~~~~~~~~ 106 (179)
..+|+ +|.++|| +++++.+.......++.|. +........+ +..+ |||+|.+. +......+++
T Consensus 275 ~~~V~IvG~~nvGKSSL~n~l~~~~~~iv~~~pGvT~d~~~~~~~~~-~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~ 353 (712)
T PRK09518 275 VGVVAIVGRPNVGKSTLVNRILGRREAVVEDTPGVTRDRVSYDAEWA-GTDFKLVDTGGWEADVEGIDSAIASQAQIAVS 353 (712)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCceeecCCCCeeEEEEEEEEEEC-CEEEEEEeCCCcCCCCccHHHHHHHHHHHHHH
Confidence 46786 9999999 6666654322222233333 3333444556 6666 99999763 3344566789
Q ss_pred CCcEEEEEEeCCChhhHHHH-HHHHHHHHHHhCCccCccccceEEEEeeCCCcCC
Q psy15036 107 GTMGFLLIFDVTNENSFKDV-EKWLLQIKVMDGALFTHFELQIVFMRGCLELLQR 160 (179)
Q Consensus 107 ~~~~vilvyDit~~~Sf~~l-~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~ 160 (179)
.+|++++|+|.++. +... ..|.+.+++ .+ .|+++|+||+|+..
T Consensus 354 ~aD~iL~VvDa~~~--~~~~d~~i~~~Lr~---~~------~pvIlV~NK~D~~~ 397 (712)
T PRK09518 354 LADAVVFVVDGQVG--LTSTDERIVRMLRR---AG------KPVVLAVNKIDDQA 397 (712)
T ss_pred hCCEEEEEEECCCC--CCHHHHHHHHHHHh---cC------CCEEEEEECccccc
Confidence 99999999999863 2233 245555543 22 58889999999854
No 196
>PRK12317 elongation factor 1-alpha; Reviewed
Probab=98.80 E-value=1.8e-08 Score=86.06 Aligned_cols=89 Identities=7% Similarity=-0.051 Sum_probs=55.0
Q ss_pred EEEEecCCCee--eeCCCchhchhhhhhhhcCCcEEEEEEeCCChhhHHHHH-HHHHHHHHHhCCccCccccceEEEEee
Q psy15036 78 ISVTYSIGPRY--FRFPLVSRFLSLTTGLYRGTMGFLLIFDVTNENSFKDVE-KWLLQIKVMDGALFTHFELQIVFMRGC 154 (179)
Q Consensus 78 k~v~~~~~~~i--wDt~G~e~~~~~~~~~~~~~~~vilvyDit~~~Sf~~l~-~w~~~i~~~~~~~~~~~~~~~iilvGn 154 (179)
..+..+ +..+ |||+|+++|.......++.+|++++|+|.+++.++.... .++..+. .... +++++++|
T Consensus 77 ~~~~~~-~~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~~~~~~~~~-~~~~-------~~iivviN 147 (425)
T PRK12317 77 KKFETD-KYYFTIVDCPGHRDFVKNMITGASQADAAVLVVAADDAGGVMPQTREHVFLAR-TLGI-------NQLIVAIN 147 (425)
T ss_pred EEEecC-CeEEEEEECCCcccchhhHhhchhcCCEEEEEEEcccCCCCCcchHHHHHHHH-HcCC-------CeEEEEEE
Confidence 445555 6666 999999988654445578999999999998742332222 2222222 2222 47888999
Q ss_pred CCCcCCCCC----CCHHHHHHHHhh
Q psy15036 155 LELLQRCRE----VVTPDQIMFGST 175 (179)
Q Consensus 155 K~Dl~~~r~----Vs~~e~~~~a~~ 175 (179)
|+|+.+... ...++..++.+.
T Consensus 148 K~Dl~~~~~~~~~~~~~~i~~~l~~ 172 (425)
T PRK12317 148 KMDAVNYDEKRYEEVKEEVSKLLKM 172 (425)
T ss_pred ccccccccHHHHHHHHHHHHHHHHh
Confidence 999964211 223455555543
No 197
>cd01885 EF2 EF2 (for archaea and eukarya). Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco
Probab=98.78 E-value=2.2e-08 Score=78.55 Aligned_cols=73 Identities=12% Similarity=-0.089 Sum_probs=55.2
Q ss_pred eeCCCchhchhhhhhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcC-CCCCCCHH
Q psy15036 89 FRFPLVSRFLSLTTGLYRGTMGFLLIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQ-RCREVVTP 167 (179)
Q Consensus 89 wDt~G~e~~~~~~~~~~~~~~~vilvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~-~~r~Vs~~ 167 (179)
|||+|++.|......+++.+|++++|+|+++..+.+....|. .+. ... .|+++|+||+|+. .++.++.+
T Consensus 78 iDTPG~~~f~~~~~~~l~~aD~~ilVvD~~~g~~~~t~~~l~-~~~---~~~------~p~ilviNKiD~~~~e~~~~~~ 147 (222)
T cd01885 78 IDSPGHVDFSSEVTAALRLCDGALVVVDAVEGVCVQTETVLR-QAL---KER------VKPVLVINKIDRLILELKLSPE 147 (222)
T ss_pred ECCCCccccHHHHHHHHHhcCeeEEEEECCCCCCHHHHHHHH-HHH---HcC------CCEEEEEECCCcchhhhcCCHH
Confidence 999999999999999999999999999999876665432222 222 222 4678899999985 56677776
Q ss_pred HHHH
Q psy15036 168 DQIM 171 (179)
Q Consensus 168 e~~~ 171 (179)
++..
T Consensus 148 ~~~~ 151 (222)
T cd01885 148 EAYQ 151 (222)
T ss_pred HHHH
Confidence 6544
No 198
>cd04168 TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.
Probab=98.78 E-value=2.9e-08 Score=78.52 Aligned_cols=72 Identities=7% Similarity=-0.042 Sum_probs=54.4
Q ss_pred EEEEecCCCee--eeCCCchhchhhhhhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeC
Q psy15036 78 ISVTYSIGPRY--FRFPLVSRFLSLTTGLYRGTMGFLLIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCL 155 (179)
Q Consensus 78 k~v~~~~~~~i--wDt~G~e~~~~~~~~~~~~~~~vilvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK 155 (179)
..+..+ +..+ |||+|+..|......+++.+|++++|+|.++..+. ....|+..+.+. . .|+++++||
T Consensus 57 ~~~~~~-~~~i~liDTPG~~~f~~~~~~~l~~aD~~IlVvd~~~g~~~-~~~~~~~~~~~~---~------~P~iivvNK 125 (237)
T cd04168 57 ASFQWE-DTKVNLIDTPGHMDFIAEVERSLSVLDGAILVISAVEGVQA-QTRILWRLLRKL---N------IPTIIFVNK 125 (237)
T ss_pred EEEEEC-CEEEEEEeCCCccchHHHHHHHHHHhCeEEEEEeCCCCCCH-HHHHHHHHHHHc---C------CCEEEEEEC
Confidence 344455 5566 99999999998888999999999999999986543 344555555442 2 467789999
Q ss_pred CCcCC
Q psy15036 156 ELLQR 160 (179)
Q Consensus 156 ~Dl~~ 160 (179)
+|+..
T Consensus 126 ~D~~~ 130 (237)
T cd04168 126 IDRAG 130 (237)
T ss_pred ccccC
Confidence 99874
No 199
>PRK05433 GTP-binding protein LepA; Provisional
Probab=98.77 E-value=3e-08 Score=88.01 Aligned_cols=62 Identities=13% Similarity=0.005 Sum_probs=50.4
Q ss_pred eeCCCchhchhhhhhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCC
Q psy15036 89 FRFPLVSRFLSLTTGLYRGTMGFLLIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQR 160 (179)
Q Consensus 89 wDt~G~e~~~~~~~~~~~~~~~vilvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~ 160 (179)
|||+|++.|......+++.+|++|+|+|.++..+.+....|..... .+ .|+++|+||+|+.+
T Consensus 79 iDTPGh~dF~~~v~~sl~~aD~aILVVDas~gv~~qt~~~~~~~~~----~~------lpiIvViNKiDl~~ 140 (600)
T PRK05433 79 IDTPGHVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALE----ND------LEIIPVLNKIDLPA 140 (600)
T ss_pred EECCCcHHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHH----CC------CCEEEEEECCCCCc
Confidence 9999999999888999999999999999998766666666654321 22 46888999999965
No 200
>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1. RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.
Probab=98.77 E-value=4.6e-08 Score=77.12 Aligned_cols=106 Identities=12% Similarity=0.107 Sum_probs=63.0
Q ss_pred EEE-EeCCCCc-------eeEeeeccCCCcccCcceeeeeEEEEEecCCCee--eeCCCchhchh-----hhhhhhcCCc
Q psy15036 45 GTQ-LGRRGIP-------LLKHLKYLGTGTHGKTVGIVFPAISVTYSIGPRY--FRFPLVSRFLS-----LTTGLYRGTM 109 (179)
Q Consensus 45 Kiv-lG~~gvG-------~~~~~~~~~~~~~~~Ti~~~~~~k~v~~~~~~~i--wDt~G~e~~~~-----~~~~~~~~~~ 109 (179)
||| +|.+++| ++.+..........+|+.++. ..+....+-.+ ||++||..+.. .....|+++.
T Consensus 1 KiLLmG~~~SGKTSi~~vIF~~~~p~dT~~L~~T~~ve~--~~v~~~~~~~l~iwD~pGq~~~~~~~~~~~~~~if~~v~ 78 (232)
T PF04670_consen 1 KILLMGPRRSGKTSIRSVIFHKYSPRDTLRLEPTIDVEK--SHVRFLSFLPLNIWDCPGQDDFMENYFNSQREEIFSNVG 78 (232)
T ss_dssp EEEEEESTTSSHHHHHHHHHS---GGGGGG-----SEEE--EEEECTTSCEEEEEEE-SSCSTTHTTHTCCHHHHHCTES
T ss_pred CEEEEcCCCCChhhHHHHHHcCCCchhccccCCcCCceE--EEEecCCCcEEEEEEcCCccccccccccccHHHHHhccC
Confidence 787 9999999 232333322334457776553 23433314445 99999976643 4577899999
Q ss_pred EEEEEEeCCChhhHHHHH---HHHHHHHHHhCCccCccccceEEEEeeCCCcC
Q psy15036 110 GFLLIFDVTNENSFKDVE---KWLLQIKVMDGALFTHFELQIVFMRGCLELLQ 159 (179)
Q Consensus 110 ~vilvyDit~~~Sf~~l~---~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~ 159 (179)
++|+|+|+.+++-.+.+. ..++.+.+..+. ..+.+.-+|.|+.
T Consensus 79 ~LIyV~D~qs~~~~~~l~~~~~~i~~l~~~sp~-------~~v~vfiHK~D~l 124 (232)
T PF04670_consen 79 VLIYVFDAQSDDYDEDLAYLSDCIEALRQYSPN-------IKVFVFIHKMDLL 124 (232)
T ss_dssp EEEEEEETT-STCHHHHHHHHHHHHHHHHHSTT--------EEEEEEE-CCCS
T ss_pred EEEEEEEcccccHHHHHHHHHHHHHHHHHhCCC-------CeEEEEEeecccC
Confidence 999999999665555544 455555555554 5677778999984
No 201
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=98.74 E-value=8.9e-08 Score=87.16 Aligned_cols=120 Identities=9% Similarity=0.039 Sum_probs=76.6
Q ss_pred eeEEE-EeCCCCc---eeEeeeccCCCcccCcceeee--eEEEEEecCCCee--eeCCCchhchhh----------hhhh
Q psy15036 43 NFGTQ-LGRRGIP---LLKHLKYLGTGTHGKTVGIVF--PAISVTYSIGPRY--FRFPLVSRFLSL----------TTGL 104 (179)
Q Consensus 43 ~~Kiv-lG~~gvG---~~~~~~~~~~~~~~~Ti~~~~--~~k~v~~~~~~~i--wDt~G~e~~~~~----------~~~~ 104 (179)
.+||. +|+++|| +++.+.+... ...+..|.+. ....+..+ +..+ ||++|..++... ...|
T Consensus 3 ~~~IaLvG~pNvGKSTLfN~Ltg~~~-~vgn~pGvTve~k~g~~~~~-~~~i~lvDtPG~ysl~~~~~~~s~~E~i~~~~ 80 (772)
T PRK09554 3 KLTIGLIGNPNSGKTTLFNQLTGARQ-RVGNWAGVTVERKEGQFSTT-DHQVTLVDLPGTYSLTTISSQTSLDEQIACHY 80 (772)
T ss_pred ceEEEEECCCCCCHHHHHHHHhCCCC-ccCCCCCceEeeEEEEEEcC-ceEEEEEECCCccccccccccccHHHHHHHHH
Confidence 46786 9999999 6666653321 2233333333 33344555 5566 999999877532 2334
Q ss_pred h--cCCcEEEEEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCCCCCCCHHHHHHHHhhhC
Q psy15036 105 Y--RGTMGFLLIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQRCREVVTPDQIMFGSTQS 177 (179)
Q Consensus 105 ~--~~~~~vilvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~~r~Vs~~e~~~~a~~~~ 177 (179)
+ ..+|++++|+|.++.+.- ..|..++.+. . .|+++|.||+|+.+++.+. .+.++++++.+
T Consensus 81 l~~~~aD~vI~VvDat~ler~---l~l~~ql~e~---g------iPvIvVlNK~Dl~~~~~i~-id~~~L~~~LG 142 (772)
T PRK09554 81 ILSGDADLLINVVDASNLERN---LYLTLQLLEL---G------IPCIVALNMLDIAEKQNIR-IDIDALSARLG 142 (772)
T ss_pred HhccCCCEEEEEecCCcchhh---HHHHHHHHHc---C------CCEEEEEEchhhhhccCcH-HHHHHHHHHhC
Confidence 3 379999999999886542 3455555543 2 4788999999997766664 45566666544
No 202
>PRK00093 GTP-binding protein Der; Reviewed
Probab=98.74 E-value=1e-07 Score=81.50 Aligned_cols=108 Identities=12% Similarity=-0.011 Sum_probs=67.4
Q ss_pred eeeEEE-EeCCCCc---eeEeeeccC--CCcccCcceeeeeEEEEEecCCCee--eeCCCchh----------chhhh-h
Q psy15036 42 FNFGTQ-LGRRGIP---LLKHLKYLG--TGTHGKTVGIVFPAISVTYSIGPRY--FRFPLVSR----------FLSLT-T 102 (179)
Q Consensus 42 ~~~Kiv-lG~~gvG---~~~~~~~~~--~~~~~~Ti~~~~~~k~v~~~~~~~i--wDt~G~e~----------~~~~~-~ 102 (179)
..+||+ +|..++| ++..+.+.. .....+....+.....+..+ +..+ |||+|..+ |...+ .
T Consensus 172 ~~~~v~ivG~~n~GKStlin~ll~~~~~~~~~~~gtt~~~~~~~~~~~-~~~~~lvDT~G~~~~~~~~~~~e~~~~~~~~ 250 (435)
T PRK00093 172 EPIKIAIIGRPNVGKSSLINALLGEERVIVSDIAGTTRDSIDTPFERD-GQKYTLIDTAGIRRKGKVTEGVEKYSVIRTL 250 (435)
T ss_pred cceEEEEECCCCCCHHHHHHHHhCCCceeecCCCCceEEEEEEEEEEC-CeeEEEEECCCCCCCcchhhHHHHHHHHHHH
Confidence 368997 9999999 554444221 11112222223333445566 7666 99999633 22222 2
Q ss_pred hhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCC
Q psy15036 103 GLYRGTMGFLLIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQR 160 (179)
Q Consensus 103 ~~~~~~~~vilvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~ 160 (179)
.+++.+|++|+|+|.++..+..... +...+.+. . .|+++|+||+|+.+
T Consensus 251 ~~~~~ad~~ilViD~~~~~~~~~~~-i~~~~~~~---~------~~~ivv~NK~Dl~~ 298 (435)
T PRK00093 251 KAIERADVVLLVIDATEGITEQDLR-IAGLALEA---G------RALVIVVNKWDLVD 298 (435)
T ss_pred HHHHHCCEEEEEEeCCCCCCHHHHH-HHHHHHHc---C------CcEEEEEECccCCC
Confidence 3688999999999999988877653 33333322 2 46788899999964
No 203
>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.
Probab=98.73 E-value=1.3e-07 Score=74.67 Aligned_cols=83 Identities=17% Similarity=0.193 Sum_probs=52.6
Q ss_pred EEE-EeCCCCc---eeEeeeccCC--Cccc-CcceeeeeEEEEEecCCCee--eeCCCchhch-------hhhhhhhcCC
Q psy15036 45 GTQ-LGRRGIP---LLKHLKYLGT--GTHG-KTVGIVFPAISVTYSIGPRY--FRFPLVSRFL-------SLTTGLYRGT 108 (179)
Q Consensus 45 Kiv-lG~~gvG---~~~~~~~~~~--~~~~-~Ti~~~~~~k~v~~~~~~~i--wDt~G~e~~~-------~~~~~~~~~~ 108 (179)
||+ +|.+++| +++.+.+... ..+. +|.. .....+.++ +..+ ||++|+.+.. .....+++++
T Consensus 2 ~v~lvG~~~~GKStLl~~Ltg~~~~v~~~~~tT~~--~~~g~~~~~-~~~i~l~DtpG~~~~~~~~~~~~~~~l~~~~~a 78 (233)
T cd01896 2 RVALVGFPSVGKSTLLSKLTNTKSEVAAYEFTTLT--CVPGVLEYK-GAKIQLLDLPGIIEGAADGKGRGRQVIAVARTA 78 (233)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCccccCCCCcccc--ceEEEEEEC-CeEEEEEECCCcccccccchhHHHHHHHhhccC
Confidence 576 9999999 6666664321 2222 2332 223455667 7777 9999985432 1234578999
Q ss_pred cEEEEEEeCCChh-hHHHHHHHH
Q psy15036 109 MGFLLIFDVTNEN-SFKDVEKWL 130 (179)
Q Consensus 109 ~~vilvyDit~~~-Sf~~l~~w~ 130 (179)
|++++|+|.++++ ..+.+...+
T Consensus 79 d~il~V~D~t~~~~~~~~~~~~l 101 (233)
T cd01896 79 DLILMVLDATKPEGHREILEREL 101 (233)
T ss_pred CEEEEEecCCcchhHHHHHHHHH
Confidence 9999999998865 444444443
No 204
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=98.71 E-value=3.4e-08 Score=72.20 Aligned_cols=101 Identities=14% Similarity=0.098 Sum_probs=64.5
Q ss_pred EE-EeCCCCc---eeEeee-ccCCCcccCcceeeeeEEEEEecCCCee-eeCCCc----------hhchhhhhhhhcC--
Q psy15036 46 TQ-LGRRGIP---LLKHLK-YLGTGTHGKTVGIVFPAISVTYSIGPRY-FRFPLV----------SRFLSLTTGLYRG-- 107 (179)
Q Consensus 46 iv-lG~~gvG---~~~~~~-~~~~~~~~~Ti~~~~~~k~v~~~~~~~i-wDt~G~----------e~~~~~~~~~~~~-- 107 (179)
|+ +|+.|+| +++.+. ..+.....++.+.+.....+..+ +... ||++|. +.+..+...|+..
T Consensus 2 i~l~G~~g~GKTtL~~~l~~~~~~~~~~~~~~~t~~~~~~~~~-~~~~~~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (170)
T cd01876 2 IAFAGRSNVGKSSLINALTNRKKLARTSKTPGKTQLINFFNVN-DKFRLVDLPGYGYAKVSKEVKEKWGKLIEEYLENRE 80 (170)
T ss_pred EEEEcCCCCCHHHHHHHHhcCCceeeecCCCCcceeEEEEEcc-CeEEEecCCCccccccCHHHHHHHHHHHHHHHHhCh
Confidence 65 9999999 565555 34455556666655544455555 4333 999983 3455555666664
Q ss_pred -CcEEEEEEeCCChhh--HHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcC
Q psy15036 108 -TMGFLLIFDVTNENS--FKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQ 159 (179)
Q Consensus 108 -~~~vilvyDit~~~S--f~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~ 159 (179)
.+++++++|.++..+ ...+..|+... . .|+++|+||+|+.
T Consensus 81 ~~~~~~~v~d~~~~~~~~~~~~~~~l~~~------~------~~vi~v~nK~D~~ 123 (170)
T cd01876 81 NLKGVVLLIDSRHGPTEIDLEMLDWLEEL------G------IPFLVVLTKADKL 123 (170)
T ss_pred hhhEEEEEEEcCcCCCHhHHHHHHHHHHc------C------CCEEEEEEchhcC
Confidence 467888999887632 23344555432 1 4778889999984
No 205
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=98.70 E-value=1e-07 Score=76.77 Aligned_cols=71 Identities=8% Similarity=-0.054 Sum_probs=50.9
Q ss_pred EEEecCCCee--eeCCCchhchhhhhhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCC
Q psy15036 79 SVTYSIGPRY--FRFPLVSRFLSLTTGLYRGTMGFLLIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLE 156 (179)
Q Consensus 79 ~v~~~~~~~i--wDt~G~e~~~~~~~~~~~~~~~vilvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~ 156 (179)
.+..+ +..+ |||+|+++|.......++.+|++|+|+|.++... .....++..... .+ .|+++++||+
T Consensus 65 ~~~~~-~~~i~liDTPG~~df~~~~~~~l~~aD~~IlVvda~~g~~-~~~~~i~~~~~~---~~------~P~iivvNK~ 133 (267)
T cd04169 65 QFEYR-DCVINLLDTPGHEDFSEDTYRTLTAVDSAVMVIDAAKGVE-PQTRKLFEVCRL---RG------IPIITFINKL 133 (267)
T ss_pred EEeeC-CEEEEEEECCCchHHHHHHHHHHHHCCEEEEEEECCCCcc-HHHHHHHHHHHh---cC------CCEEEEEECC
Confidence 45555 6666 9999999998877788999999999999987533 222344433322 12 4678889999
Q ss_pred CcCC
Q psy15036 157 LLQR 160 (179)
Q Consensus 157 Dl~~ 160 (179)
|+..
T Consensus 134 D~~~ 137 (267)
T cd04169 134 DREG 137 (267)
T ss_pred ccCC
Confidence 9865
No 206
>cd04166 CysN_ATPS CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.
Probab=98.69 E-value=2.4e-07 Score=71.72 Aligned_cols=73 Identities=8% Similarity=-0.037 Sum_probs=48.6
Q ss_pred EEEEecCCCee--eeCCCchhchhhhhhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeC
Q psy15036 78 ISVTYSIGPRY--FRFPLVSRFLSLTTGLYRGTMGFLLIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCL 155 (179)
Q Consensus 78 k~v~~~~~~~i--wDt~G~e~~~~~~~~~~~~~~~vilvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK 155 (179)
..+..+ +..+ |||+|+++|.......++.+|++++|+|.++... .........+.. ... +++|+|.||
T Consensus 70 ~~~~~~-~~~~~liDTpG~~~~~~~~~~~~~~ad~~llVvD~~~~~~-~~~~~~~~~~~~-~~~-------~~iIvviNK 139 (208)
T cd04166 70 RYFSTP-KRKFIIADTPGHEQYTRNMVTGASTADLAILLVDARKGVL-EQTRRHSYILSL-LGI-------RHVVVAVNK 139 (208)
T ss_pred eEEecC-CceEEEEECCcHHHHHHHHHHhhhhCCEEEEEEECCCCcc-HhHHHHHHHHHH-cCC-------CcEEEEEEc
Confidence 344556 6666 9999999987656667899999999999987522 111222222222 222 467788999
Q ss_pred CCcCC
Q psy15036 156 ELLQR 160 (179)
Q Consensus 156 ~Dl~~ 160 (179)
+|+.+
T Consensus 140 ~D~~~ 144 (208)
T cd04166 140 MDLVD 144 (208)
T ss_pred hhccc
Confidence 99864
No 207
>PRK12296 obgE GTPase CgtA; Reviewed
Probab=98.65 E-value=1e-07 Score=82.56 Aligned_cols=117 Identities=12% Similarity=0.044 Sum_probs=70.3
Q ss_pred eEEE-EeCCCCc---eeEeeeccCC--Ccc-cCcceeeeeEEEEEecCCCee--eeCCCch----hchhhhhh---hhcC
Q psy15036 44 FGTQ-LGRRGIP---LLKHLKYLGT--GTH-GKTVGIVFPAISVTYSIGPRY--FRFPLVS----RFLSLTTG---LYRG 107 (179)
Q Consensus 44 ~Kiv-lG~~gvG---~~~~~~~~~~--~~~-~~Ti~~~~~~k~v~~~~~~~i--wDt~G~e----~~~~~~~~---~~~~ 107 (179)
.+|. ||.+++| +++.+....+ ..| .+|+.... -.+.++ +..+ ||++|.- ....+... ++..
T Consensus 160 adV~LVG~PNAGKSTLln~Ls~akpkIadypfTTl~P~l--Gvv~~~-~~~f~laDtPGliegas~g~gLg~~fLrhier 236 (500)
T PRK12296 160 ADVGLVGFPSAGKSSLISALSAAKPKIADYPFTTLVPNL--GVVQAG-DTRFTVADVPGLIPGASEGKGLGLDFLRHIER 236 (500)
T ss_pred ceEEEEEcCCCCHHHHHHHHhcCCccccccCcccccceE--EEEEEC-CeEEEEEECCCCccccchhhHHHHHHHHHHHh
Confidence 4465 9999999 6655553211 122 23433222 345566 6666 9999952 22223222 3567
Q ss_pred CcEEEEEEeCCC----hhhHHHHHHHHHHHHHHhCCc-----cCccccceEEEEeeCCCcCCCCC
Q psy15036 108 TMGFLLIFDVTN----ENSFKDVEKWLLQIKVMDGAL-----FTHFELQIVFMRGCLELLQRCRE 163 (179)
Q Consensus 108 ~~~vilvyDit~----~~Sf~~l~~w~~~i~~~~~~~-----~~~~~~~~iilvGnK~Dl~~~r~ 163 (179)
++++|+|+|.++ ++.++.+..|..++..+.... .......|+++|+||+|+.+.+.
T Consensus 237 advLv~VVD~s~~e~~rdp~~d~~~i~~EL~~y~~~l~~~~~~~~l~~kP~IVVlNKiDL~da~e 301 (500)
T PRK12296 237 CAVLVHVVDCATLEPGRDPLSDIDALEAELAAYAPALDGDLGLGDLAERPRLVVLNKIDVPDARE 301 (500)
T ss_pred cCEEEEEECCcccccccCchhhHHHHHHHHHHhhhcccccchhhhhcCCCEEEEEECccchhhHH
Confidence 899999999986 457777777887776654310 00000147788999999965443
No 208
>PRK13351 elongation factor G; Reviewed
Probab=98.64 E-value=1.1e-07 Score=85.89 Aligned_cols=105 Identities=13% Similarity=0.032 Sum_probs=72.3
Q ss_pred eeEEE-EeCCCCc---eeEeeecc--------------CCC-------cccCcceeeeeEEEEEecCCCee--eeCCCch
Q psy15036 43 NFGTQ-LGRRGIP---LLKHLKYL--------------GTG-------THGKTVGIVFPAISVTYSIGPRY--FRFPLVS 95 (179)
Q Consensus 43 ~~Kiv-lG~~gvG---~~~~~~~~--------------~~~-------~~~~Ti~~~~~~k~v~~~~~~~i--wDt~G~e 95 (179)
..+|. +|..++| ++.++... ... ++..|+.... ..+... +..+ |||+|+.
T Consensus 8 irni~iiG~~~~GKTtL~~~ll~~~g~~~~~~~v~~~~~~~d~~~~e~~r~~ti~~~~--~~~~~~-~~~i~liDtPG~~ 84 (687)
T PRK13351 8 IRNIGILAHIDAGKTTLTERILFYTGKIHKMGEVEDGTTVTDWMPQEQERGITIESAA--TSCDWD-NHRINLIDTPGHI 84 (687)
T ss_pred ccEEEEECCCCCcchhHHHHHHHhcCCccccccccCCcccCCCCHHHHhcCCCcccce--EEEEEC-CEEEEEEECCCcH
Confidence 56786 9999999 33333210 000 2334444332 244445 5556 9999999
Q ss_pred hchhhhhhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCC
Q psy15036 96 RFLSLTTGLYRGTMGFLLIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQR 160 (179)
Q Consensus 96 ~~~~~~~~~~~~~~~vilvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~ 160 (179)
+|......+++.+|++++|+|.++..++.....|. .+.+. + .|+++++||+|+..
T Consensus 85 df~~~~~~~l~~aD~~ilVvd~~~~~~~~~~~~~~-~~~~~---~------~p~iiviNK~D~~~ 139 (687)
T PRK13351 85 DFTGEVERSLRVLDGAVVVFDAVTGVQPQTETVWR-QADRY---G------IPRLIFINKMDRVG 139 (687)
T ss_pred HHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHH-HHHhc---C------CCEEEEEECCCCCC
Confidence 99988899999999999999999988877666663 23322 2 56788999999875
No 209
>KOG3886|consensus
Probab=98.63 E-value=9.2e-08 Score=74.63 Aligned_cols=119 Identities=17% Similarity=0.202 Sum_probs=78.7
Q ss_pred eeEEE-EeCCCCc--eeEeee-----ccCCCcccCcceeeeeEEEEEecCCCee---eeCCCchhch-----hhhhhhhc
Q psy15036 43 NFGTQ-LGRRGIP--LLKHLK-----YLGTGTHGKTVGIVFPAISVTYSIGPRY---FRFPLVSRFL-----SLTTGLYR 106 (179)
Q Consensus 43 ~~Kiv-lG~~gvG--~~~~~~-----~~~~~~~~~Ti~~~~~~k~v~~~~~~~i---wDt~G~e~~~-----~~~~~~~~ 106 (179)
.-||+ +|.+|.| .++-+. ........+||.++.. .+.+- |.-+ ||++||+.|- ......++
T Consensus 4 ~kKvlLMGrsGsGKsSmrsiiF~ny~a~D~~rlg~tidveHs--h~Rfl-Gnl~LnlwDcGgqe~fmen~~~~q~d~iF~ 80 (295)
T KOG3886|consen 4 KKKVLLMGRSGSGKSSMRSIIFANYIARDTRRLGATIDVEHS--HVRFL-GNLVLNLWDCGGQEEFMENYLSSQEDNIFR 80 (295)
T ss_pred cceEEEeccCCCCccccchhhhhhhhhhhhhccCCcceeeeh--hhhhh-hhheeehhccCCcHHHHHHHHhhcchhhhe
Confidence 45887 9999999 333332 2224455677776654 33444 5444 9999999652 35567789
Q ss_pred CCcEEEEEEeCCChhhHHHHHHHHH---HHHHHhCCccCccccceEEEEeeCCCcC--CCCCCCHHHHHH
Q psy15036 107 GTMGFLLIFDVTNENSFKDVEKWLL---QIKVMDGALFTHFELQIVFMRGCLELLQ--RCREVVTPDQIM 171 (179)
Q Consensus 107 ~~~~vilvyDit~~~Sf~~l~~w~~---~i~~~~~~~~~~~~~~~iilvGnK~Dl~--~~r~Vs~~e~~~ 171 (179)
+.+++|.|||+...+--..+..+.+ .+.++.+. ..++..-+|.||. ++|++...+-++
T Consensus 81 nV~vli~vFDves~e~~~D~~~yqk~Le~ll~~SP~-------AkiF~l~hKmDLv~~d~r~~if~~r~~ 143 (295)
T KOG3886|consen 81 NVQVLIYVFDVESREMEKDFHYYQKCLEALLQNSPE-------AKIFCLLHKMDLVQEDARELIFQRRKE 143 (295)
T ss_pred eheeeeeeeeccchhhhhhHHHHHHHHHHHHhcCCc-------ceEEEEEeechhcccchHHHHHHHHHH
Confidence 9999999999998876666655544 44455544 4677778999994 445554444443
No 210
>PRK10218 GTP-binding protein; Provisional
Probab=98.63 E-value=1.7e-07 Score=83.21 Aligned_cols=109 Identities=11% Similarity=-0.107 Sum_probs=71.1
Q ss_pred eeEEE-EeCCCCc---eeEeee---ccCCCc------------ccCcceeeeeEEEEEecC-CCee--eeCCCchhchhh
Q psy15036 43 NFGTQ-LGRRGIP---LLKHLK---YLGTGT------------HGKTVGIVFPAISVTYSI-GPRY--FRFPLVSRFLSL 100 (179)
Q Consensus 43 ~~Kiv-lG~~gvG---~~~~~~---~~~~~~------------~~~Ti~~~~~~k~v~~~~-~~~i--wDt~G~e~~~~~ 100 (179)
.-+|. +|..++| ++..+. +.+... ...+.|+++..+...+.. +..+ |||+|+..|...
T Consensus 5 iRnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~v~D~~~~E~erGiTi~~~~~~i~~~~~~inliDTPG~~df~~~ 84 (607)
T PRK10218 5 LRNIAIIAHVDHGKTTLVDKLLQQSGTFDSRAETQERVMDSNDLEKERGITILAKNTAIKWNDYRINIVDTPGHADFGGE 84 (607)
T ss_pred ceEEEEECCCCCcHHHHHHHHHHhcCCcccccccceeeeccccccccCceEEEEEEEEEecCCEEEEEEECCCcchhHHH
Confidence 45676 9999999 333333 222221 234566666555554431 4444 999999999999
Q ss_pred hhhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCCC
Q psy15036 101 TTGLYRGTMGFLLIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQRC 161 (179)
Q Consensus 101 ~~~~~~~~~~vilvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~~ 161 (179)
...+++.+|++|+|+|.++.... ....++..+... . .|++++.||+|+.+.
T Consensus 85 v~~~l~~aDg~ILVVDa~~G~~~-qt~~~l~~a~~~---g------ip~IVviNKiD~~~a 135 (607)
T PRK10218 85 VERVMSMVDSVLLVVDAFDGPMP-QTRFVTKKAFAY---G------LKPIVVINKVDRPGA 135 (607)
T ss_pred HHHHHHhCCEEEEEEecccCccH-HHHHHHHHHHHc---C------CCEEEEEECcCCCCC
Confidence 99999999999999999875322 233344444332 2 355778999998653
No 211
>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.
Probab=98.62 E-value=1.3e-07 Score=71.83 Aligned_cols=108 Identities=17% Similarity=0.186 Sum_probs=61.3
Q ss_pred EE-EeCCCCc---eeEeeeccCCCcccCcceeeeeEEEEEe---cCCCee--eeCCCchhchhhhhh---hhcCCcEEEE
Q psy15036 46 TQ-LGRRGIP---LLKHLKYLGTGTHGKTVGIVFPAISVTY---SIGPRY--FRFPLVSRFLSLTTG---LYRGTMGFLL 113 (179)
Q Consensus 46 iv-lG~~gvG---~~~~~~~~~~~~~~~Ti~~~~~~k~v~~---~~~~~i--wDt~G~e~~~~~~~~---~~~~~~~vil 113 (179)
|+ +|.+|+| ++..+... ...+|...--....+.+ . +..+ .|++|+++.+..... +...+.|+|+
T Consensus 6 vlL~Gps~SGKTaLf~~L~~~---~~~~T~tS~e~n~~~~~~~~~-~~~~~lvD~PGH~rlr~~~~~~~~~~~~~k~IIf 81 (181)
T PF09439_consen 6 VLLVGPSGSGKTALFSQLVNG---KTVPTVTSMENNIAYNVNNSK-GKKLRLVDIPGHPRLRSKLLDELKYLSNAKGIIF 81 (181)
T ss_dssp EEEE-STTSSHHHHHHHHHHS---S---B---SSEEEECCGSSTC-GTCECEEEETT-HCCCHHHHHHHHHHGGEEEEEE
T ss_pred EEEEcCCCCCHHHHHHHHhcC---CcCCeeccccCCceEEeecCC-CCEEEEEECCCcHHHHHHHHHhhhchhhCCEEEE
Confidence 56 9999999 55555532 22232211101112222 2 3444 899999998863333 5788999999
Q ss_pred EEeCCC-hhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCC
Q psy15036 114 IFDVTN-ENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQR 160 (179)
Q Consensus 114 vyDit~-~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~ 160 (179)
|.|.+. ...+..+-.++..+....... ...+|+++++||.|+..
T Consensus 82 vvDSs~~~~~~~~~Ae~Ly~iL~~~~~~---~~~~piLIacNK~Dl~~ 126 (181)
T PF09439_consen 82 VVDSSTDQKELRDVAEYLYDILSDTEVQ---KNKPPILIACNKQDLFT 126 (181)
T ss_dssp EEETTTHHHHHHHHHHHHHHHHHHHHCC---TT--EEEEEEE-TTSTT
T ss_pred EEeCccchhhHHHHHHHHHHHHHhhhhc---cCCCCEEEEEeCccccc
Confidence 999873 556677766666654332210 01289999999999965
No 212
>PRK00089 era GTPase Era; Reviewed
Probab=98.62 E-value=1.7e-07 Score=75.97 Aligned_cols=117 Identities=14% Similarity=0.036 Sum_probs=63.0
Q ss_pred EEE-EeCCCCc---eeEeeeccCCCc---ccCcceeeeeEEEEEecCCCee--eeCCCchhch--------hhhhhhhcC
Q psy15036 45 GTQ-LGRRGIP---LLKHLKYLGTGT---HGKTVGIVFPAISVTYSIGPRY--FRFPLVSRFL--------SLTTGLYRG 107 (179)
Q Consensus 45 Kiv-lG~~gvG---~~~~~~~~~~~~---~~~Ti~~~~~~k~v~~~~~~~i--wDt~G~e~~~--------~~~~~~~~~ 107 (179)
.|. +|..|+| +++.+.+..... ...|..... ...+..+ +..+ |||+|..... ......+.+
T Consensus 7 ~V~iiG~pn~GKSTLin~L~g~~~~~vs~~~~tt~~~i-~~i~~~~-~~qi~~iDTPG~~~~~~~l~~~~~~~~~~~~~~ 84 (292)
T PRK00089 7 FVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRHRI-RGIVTED-DAQIIFVDTPGIHKPKRALNRAMNKAAWSSLKD 84 (292)
T ss_pred EEEEECCCCCCHHHHHHHHhCCceeecCCCCCcccccE-EEEEEcC-CceEEEEECCCCCCchhHHHHHHHHHHHHHHhc
Confidence 354 9999999 555555332111 111211111 1122223 4455 9999974432 233446789
Q ss_pred CcEEEEEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCCCCCCCHHHHHHHH
Q psy15036 108 TMGFLLIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQRCREVVTPDQIMFG 173 (179)
Q Consensus 108 ~~~vilvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~~r~Vs~~e~~~~a 173 (179)
+|++++|+|.++. +.....++..... ... .|+++|+||+|+...+....+....++
T Consensus 85 ~D~il~vvd~~~~--~~~~~~~i~~~l~--~~~------~pvilVlNKiDl~~~~~~l~~~~~~l~ 140 (292)
T PRK00089 85 VDLVLFVVDADEK--IGPGDEFILEKLK--KVK------TPVILVLNKIDLVKDKEELLPLLEELS 140 (292)
T ss_pred CCEEEEEEeCCCC--CChhHHHHHHHHh--hcC------CCEEEEEECCcCCCCHHHHHHHHHHHH
Confidence 9999999999882 2222223222222 112 478899999999743333333444443
No 213
>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional
Probab=98.61 E-value=2.7e-07 Score=82.24 Aligned_cols=99 Identities=14% Similarity=0.112 Sum_probs=65.4
Q ss_pred EeCCCCc---eeEeeec----cCCCcc--cCcceeeeeEEEEEecCCCee--eeCCCchhchhhhhhhhcCCcEEEEEEe
Q psy15036 48 LGRRGIP---LLKHLKY----LGTGTH--GKTVGIVFPAISVTYSIGPRY--FRFPLVSRFLSLTTGLYRGTMGFLLIFD 116 (179)
Q Consensus 48 lG~~gvG---~~~~~~~----~~~~~~--~~Ti~~~~~~k~v~~~~~~~i--wDt~G~e~~~~~~~~~~~~~~~vilvyD 116 (179)
+|..++| ++..+.+ .+.++. ..|+...+. .+...++..+ ||++|+++|.......+.++|++++|+|
T Consensus 6 ~GhvdhGKTtLi~aLtg~~~dr~~eE~~rGiTI~l~~~--~~~~~~g~~i~~IDtPGhe~fi~~m~~g~~~~D~~lLVVd 83 (614)
T PRK10512 6 AGHVDHGKTTLLQAITGVNADRLPEEKKRGMTIDLGYA--YWPQPDGRVLGFIDVPGHEKFLSNMLAGVGGIDHALLVVA 83 (614)
T ss_pred ECCCCCCHHHHHHHHhCCCCccchhcccCCceEEeeeE--EEecCCCcEEEEEECCCHHHHHHHHHHHhhcCCEEEEEEE
Confidence 9999999 5555553 223332 445544332 3333315555 9999999997666667899999999999
Q ss_pred CCC---hhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCC
Q psy15036 117 VTN---ENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQR 160 (179)
Q Consensus 117 it~---~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~ 160 (179)
.++ +++.+.+. .+. .... +++++|.||+|+.+
T Consensus 84 a~eg~~~qT~ehl~----il~-~lgi-------~~iIVVlNKiDlv~ 118 (614)
T PRK10512 84 CDDGVMAQTREHLA----ILQ-LTGN-------PMLTVALTKADRVD 118 (614)
T ss_pred CCCCCcHHHHHHHH----HHH-HcCC-------CeEEEEEECCccCC
Confidence 887 56665543 122 2222 45678999999965
No 214
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=98.60 E-value=1.5e-07 Score=67.52 Aligned_cols=103 Identities=13% Similarity=-0.047 Sum_probs=63.2
Q ss_pred EeCCCCc---eeEeeeccCCC---cccCcceeeeeEEEEEecCCCee--eeCCCchhchhh-------hhhhhcCCcEEE
Q psy15036 48 LGRRGIP---LLKHLKYLGTG---THGKTVGIVFPAISVTYSIGPRY--FRFPLVSRFLSL-------TTGLYRGTMGFL 112 (179)
Q Consensus 48 lG~~gvG---~~~~~~~~~~~---~~~~Ti~~~~~~k~v~~~~~~~i--wDt~G~e~~~~~-------~~~~~~~~~~vi 112 (179)
+|..|+| +++.+...... ...++. ............+..+ ||++|...+... ...+++.+|+++
T Consensus 2 ~G~~gsGKstl~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~~~~~d~il 80 (163)
T cd00880 2 FGRTNAGKSSLLNALLGQEVAIVSPVPGTT-TDPVEYVWELGPLGPVVLIDTPGIDEAGGLGREREELARRVLERADLIL 80 (163)
T ss_pred cCCCCCCHHHHHHHHhCccccccCCCCCcE-ECCeEEEEEecCCCcEEEEECCCCCccccchhhHHHHHHHHHHhCCEEE
Confidence 7999999 44444432111 122221 1222233333212233 999998776533 344789999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCCC
Q psy15036 113 LIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQRC 161 (179)
Q Consensus 113 lvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~~ 161 (179)
+|+|.++..+..... |...... .. .|+++|.||+|+...
T Consensus 81 ~v~~~~~~~~~~~~~-~~~~~~~---~~------~~~ivv~nK~D~~~~ 119 (163)
T cd00880 81 FVVDADLRADEEEEK-LLELLRE---RG------KPVLLVLNKIDLLPE 119 (163)
T ss_pred EEEeCCCCCCHHHHH-HHHHHHh---cC------CeEEEEEEccccCCh
Confidence 999999988877765 3333332 22 578899999998653
No 215
>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA. This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.
Probab=98.59 E-value=2.2e-07 Score=82.39 Aligned_cols=73 Identities=14% Similarity=0.070 Sum_probs=56.1
Q ss_pred EEEecCCCee--eeCCCchhchhhhhhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCC
Q psy15036 79 SVTYSIGPRY--FRFPLVSRFLSLTTGLYRGTMGFLLIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLE 156 (179)
Q Consensus 79 ~v~~~~~~~i--wDt~G~e~~~~~~~~~~~~~~~vilvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~ 156 (179)
.+..+ +..+ |||+|++.|......+++.+|++++|+|.++. .+.....|+..+... + .|+++|.||+
T Consensus 58 ~v~~~-~~kinlIDTPGh~DF~~ev~~~l~~aD~alLVVDa~~G-~~~qT~~~l~~a~~~---~------ip~IVviNKi 126 (594)
T TIGR01394 58 AIRYN-GTKINIVDTPGHADFGGEVERVLGMVDGVLLLVDASEG-PMPQTRFVLKKALEL---G------LKPIVVINKI 126 (594)
T ss_pred EEEEC-CEEEEEEECCCHHHHHHHHHHHHHhCCEEEEEEeCCCC-CcHHHHHHHHHHHHC---C------CCEEEEEECC
Confidence 44555 6666 99999999998888999999999999998763 455566777776653 2 4567889999
Q ss_pred CcCCCC
Q psy15036 157 LLQRCR 162 (179)
Q Consensus 157 Dl~~~r 162 (179)
|+.+.+
T Consensus 127 D~~~a~ 132 (594)
T TIGR01394 127 DRPSAR 132 (594)
T ss_pred CCCCcC
Confidence 996544
No 216
>PRK12298 obgE GTPase CgtA; Reviewed
Probab=98.53 E-value=6.5e-07 Score=75.76 Aligned_cols=120 Identities=9% Similarity=-0.011 Sum_probs=72.8
Q ss_pred EeCCCCc---eeEeeeccC--CCcc-cCcceeeeeEEEEEecCCCee--eeCCCchhch----hhhh---hhhcCCcEEE
Q psy15036 48 LGRRGIP---LLKHLKYLG--TGTH-GKTVGIVFPAISVTYSIGPRY--FRFPLVSRFL----SLTT---GLYRGTMGFL 112 (179)
Q Consensus 48 lG~~gvG---~~~~~~~~~--~~~~-~~Ti~~~~~~k~v~~~~~~~i--wDt~G~e~~~----~~~~---~~~~~~~~vi 112 (179)
+|-+++| +++.+.... ...+ ..|...... .+.+.++..+ +|++|..+-. .+.. ..+..+++++
T Consensus 165 VG~PNaGKSTLln~Lt~~k~~vs~~p~TT~~p~~G--iv~~~~~~~i~~vDtPGi~~~a~~~~~Lg~~~l~~i~radvlL 242 (390)
T PRK12298 165 LGLPNAGKSTFIRAVSAAKPKVADYPFTTLVPNLG--VVRVDDERSFVVADIPGLIEGASEGAGLGIRFLKHLERCRVLL 242 (390)
T ss_pred EcCCCCCHHHHHHHHhCCcccccCCCCCccCcEEE--EEEeCCCcEEEEEeCCCccccccchhhHHHHHHHHHHhCCEEE
Confidence 9999999 555554321 1222 233333332 3444413445 9999974311 1222 2467899999
Q ss_pred EEEeCC---ChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCCCCCCCHHHHHHHHh
Q psy15036 113 LIFDVT---NENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQRCREVVTPDQIMFGS 174 (179)
Q Consensus 113 lvyDit---~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~~r~Vs~~e~~~~a~ 174 (179)
+|+|++ ++++++++..|++++..+...- ...|++||.||+|+..+..+ .+..+++++
T Consensus 243 ~VVD~s~~~~~d~~e~~~~l~~eL~~~~~~L----~~kP~IlVlNKiDl~~~~el-~~~l~~l~~ 302 (390)
T PRK12298 243 HLIDIAPIDGSDPVENARIIINELEKYSPKL----AEKPRWLVFNKIDLLDEEEA-EERAKAIVE 302 (390)
T ss_pred EEeccCcccccChHHHHHHHHHHHHhhhhhh----cCCCEEEEEeCCccCChHHH-HHHHHHHHH
Confidence 999998 6788999999999988765311 00467888999999654333 233444444
No 217
>PRK04000 translation initiation factor IF-2 subunit gamma; Validated
Probab=98.48 E-value=1.1e-06 Score=74.98 Aligned_cols=74 Identities=8% Similarity=-0.031 Sum_probs=45.7
Q ss_pred eeCCCchhchhhhhhhhcCCcEEEEEEeCCC----hhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCCCCCC
Q psy15036 89 FRFPLVSRFLSLTTGLYRGTMGFLLIFDVTN----ENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQRCREV 164 (179)
Q Consensus 89 wDt~G~e~~~~~~~~~~~~~~~vilvyDit~----~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~~r~V 164 (179)
|||+|+++|......-...+|++++|+|.++ .++++.+..| .. ... +++++|+||+|+.++...
T Consensus 90 iDtPG~~~f~~~~~~~~~~~D~~llVVDa~~~~~~~~t~~~l~~l----~~-~~i-------~~iiVVlNK~Dl~~~~~~ 157 (411)
T PRK04000 90 VDAPGHETLMATMLSGAALMDGAILVIAANEPCPQPQTKEHLMAL----DI-IGI-------KNIVIVQNKIDLVSKERA 157 (411)
T ss_pred EECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCCChhHHHHHHHH----HH-cCC-------CcEEEEEEeeccccchhH
Confidence 9999999885433333345699999999995 4455544332 21 111 467888999999653221
Q ss_pred --CHHHHHHHHh
Q psy15036 165 --VTPDQIMFGS 174 (179)
Q Consensus 165 --s~~e~~~~a~ 174 (179)
..++.+++++
T Consensus 158 ~~~~~~i~~~l~ 169 (411)
T PRK04000 158 LENYEQIKEFVK 169 (411)
T ss_pred HHHHHHHHHHhc
Confidence 2344555543
No 218
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=98.47 E-value=5.2e-07 Score=69.54 Aligned_cols=60 Identities=10% Similarity=0.056 Sum_probs=44.7
Q ss_pred eeCCCchhchhhhhhhhcCCcEEEEEEeCCCh----hhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCC
Q psy15036 89 FRFPLVSRFLSLTTGLYRGTMGFLLIFDVTNE----NSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQR 160 (179)
Q Consensus 89 wDt~G~e~~~~~~~~~~~~~~~vilvyDit~~----~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~ 160 (179)
|||+|+++|..........+|++++|+|.+++ ++++.+..| .. ... +|+++|.||.|+.+
T Consensus 88 iDtPG~~~~~~~~~~~~~~~D~~llVvd~~~~~~~~~t~~~l~~~----~~-~~~-------~~iiivvNK~Dl~~ 151 (203)
T cd01888 88 VDCPGHEILMATMLSGAAVMDGALLLIAANEPCPQPQTSEHLAAL----EI-MGL-------KHIIIVQNKIDLVK 151 (203)
T ss_pred EECCChHHHHHHHHHhhhcCCEEEEEEECCCCCCCcchHHHHHHH----HH-cCC-------CcEEEEEEchhccC
Confidence 99999999877767777888999999999873 455554443 11 111 46788999999965
No 219
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=98.43 E-value=1.6e-06 Score=69.59 Aligned_cols=72 Identities=11% Similarity=0.060 Sum_probs=52.6
Q ss_pred EEEEecCCCee--eeCCCchhchhhhhhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeC
Q psy15036 78 ISVTYSIGPRY--FRFPLVSRFLSLTTGLYRGTMGFLLIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCL 155 (179)
Q Consensus 78 k~v~~~~~~~i--wDt~G~e~~~~~~~~~~~~~~~vilvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK 155 (179)
..+..+ +..+ |||+|+..|.......++.+|++++|+|.++.........|. .+... . .|.+++.||
T Consensus 57 ~~~~~~-~~~i~liDtPG~~~f~~~~~~~l~~aD~~i~Vvd~~~g~~~~~~~~~~-~~~~~---~------~p~iivvNK 125 (268)
T cd04170 57 APLEWK-GHKINLIDTPGYADFVGETRAALRAADAALVVVSAQSGVEVGTEKLWE-FADEA---G------IPRIIFINK 125 (268)
T ss_pred EEEEEC-CEEEEEEECcCHHHHHHHHHHHHHHCCEEEEEEeCCCCCCHHHHHHHH-HHHHc---C------CCEEEEEEC
Confidence 344455 5555 999999998888888999999999999999876655444443 22221 2 467778999
Q ss_pred CCcCC
Q psy15036 156 ELLQR 160 (179)
Q Consensus 156 ~Dl~~ 160 (179)
+|+.+
T Consensus 126 ~D~~~ 130 (268)
T cd04170 126 MDRER 130 (268)
T ss_pred CccCC
Confidence 99875
No 220
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=98.43 E-value=6.8e-07 Score=68.60 Aligned_cols=103 Identities=13% Similarity=0.147 Sum_probs=57.1
Q ss_pred eEEE-EeCCCCc---eeEeeeccC-CCcccCccee-eee--EEEEEecCCCee--eeCCCchhchhhhhhh-----hcCC
Q psy15036 44 FGTQ-LGRRGIP---LLKHLKYLG-TGTHGKTVGI-VFP--AISVTYSIGPRY--FRFPLVSRFLSLTTGL-----YRGT 108 (179)
Q Consensus 44 ~Kiv-lG~~gvG---~~~~~~~~~-~~~~~~Ti~~-~~~--~k~v~~~~~~~i--wDt~G~e~~~~~~~~~-----~~~~ 108 (179)
+||+ +|++|+| +++.+.+.. .....++.+. ... ...+.......+ ||++|..........| +.++
T Consensus 2 ~kI~i~G~~g~GKSSLin~L~g~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~l~~~~~~~~ 81 (197)
T cd04104 2 LNIAVTGESGAGKSSFINALRGVGHEEEGAAPTGVVETTMKRTPYPHPKFPNVTLWDLPGIGSTAFPPDDYLEEMKFSEY 81 (197)
T ss_pred eEEEEECCCCCCHHHHHHHHhccCCCCCCccccCccccccCceeeecCCCCCceEEeCCCCCcccCCHHHHHHHhCccCc
Confidence 6887 9999999 555554321 1112222221 111 111221101123 9999975433222223 6778
Q ss_pred cEEEEEEeCCChhhHHHH-HHHHHHHHHHhCCccCccccceEEEEeeCCCcC
Q psy15036 109 MGFLLIFDVTNENSFKDV-EKWLLQIKVMDGALFTHFELQIVFMRGCLELLQ 159 (179)
Q Consensus 109 ~~vilvyDit~~~Sf~~l-~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~ 159 (179)
|+++++-| ++|... ..|++.+++. . .++++|+||+|+.
T Consensus 82 d~~l~v~~----~~~~~~d~~~~~~l~~~--~-------~~~ilV~nK~D~~ 120 (197)
T cd04104 82 DFFIIISS----TRFSSNDVKLAKAIQCM--G-------KKFYFVRTKVDRD 120 (197)
T ss_pred CEEEEEeC----CCCCHHHHHHHHHHHHh--C-------CCEEEEEecccch
Confidence 98888743 345555 4666766654 2 3678999999984
No 221
>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma. eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.
Probab=98.42 E-value=5.7e-07 Score=76.51 Aligned_cols=60 Identities=10% Similarity=0.036 Sum_probs=43.6
Q ss_pred eeCCCchhchhhhhhhhcCCcEEEEEEeCCC----hhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCC
Q psy15036 89 FRFPLVSRFLSLTTGLYRGTMGFLLIFDVTN----ENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQR 160 (179)
Q Consensus 89 wDt~G~e~~~~~~~~~~~~~~~vilvyDit~----~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~ 160 (179)
||++|+++|..........+|++++|+|.++ .++.+.+. .+.. ... +++++|.||+|+.+
T Consensus 85 iDtPGh~~f~~~~~~g~~~aD~aIlVVDa~~g~~~~qt~e~l~----~l~~-~gi-------~~iIVvvNK~Dl~~ 148 (406)
T TIGR03680 85 VDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTKEHLM----ALEI-IGI-------KNIVIVQNKIDLVS 148 (406)
T ss_pred EECCCHHHHHHHHHHHHHHCCEEEEEEECCCCccccchHHHHH----HHHH-cCC-------CeEEEEEEccccCC
Confidence 9999999998777777778999999999985 33444433 2222 212 46778899999965
No 222
>PRK00741 prfC peptide chain release factor 3; Provisional
Probab=98.42 E-value=8.3e-07 Score=77.80 Aligned_cols=71 Identities=11% Similarity=-0.020 Sum_probs=51.3
Q ss_pred EEEecCCCee--eeCCCchhchhhhhhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCC
Q psy15036 79 SVTYSIGPRY--FRFPLVSRFLSLTTGLYRGTMGFLLIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLE 156 (179)
Q Consensus 79 ~v~~~~~~~i--wDt~G~e~~~~~~~~~~~~~~~vilvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~ 156 (179)
.+..+ +..+ |||+|++.|......+++.+|++|+|+|.++.-.- ....++...+. .+ .|++++.||+
T Consensus 73 ~~~~~-~~~inliDTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~-~t~~l~~~~~~---~~------iPiiv~iNK~ 141 (526)
T PRK00741 73 QFPYR-DCLINLLDTPGHEDFSEDTYRTLTAVDSALMVIDAAKGVEP-QTRKLMEVCRL---RD------TPIFTFINKL 141 (526)
T ss_pred EEEEC-CEEEEEEECCCchhhHHHHHHHHHHCCEEEEEEecCCCCCH-HHHHHHHHHHh---cC------CCEEEEEECC
Confidence 44555 5556 99999999988778889999999999999875321 23344433332 22 5788899999
Q ss_pred CcCC
Q psy15036 157 LLQR 160 (179)
Q Consensus 157 Dl~~ 160 (179)
|+..
T Consensus 142 D~~~ 145 (526)
T PRK00741 142 DRDG 145 (526)
T ss_pred cccc
Confidence 9865
No 223
>cd00066 G-alpha G protein alpha subunit. The alpha subunit of G proteins contains the guanine nucleotide binding site. The heterotrimeric GNP-binding proteins are signal transducers that communicate signals from many hormones, neurotransmitters, chemokines, and autocrine and paracrine factors. Extracellular signals are received by receptors, which activate the G proteins, which in turn route the signals to several distinct intracellular signaling pathways. The alpha subunit of G proteins is a weak GTPase. In the resting state, heterotrimeric G proteins are associated at the cytosolic face of the plasma membrane and the alpha subunit binds to GDP. Upon activation by a receptor GDP is replaced with GTP, and the G-alpha/GTP complex dissociates from the beta and gamma subunits. This results in activation of downstream signaling pathways, such as cAMP synthesis by adenylyl cyclase, which is terminated when GTP is hydrolized and the heterotrimers reconstitute.
Probab=98.40 E-value=1e-06 Score=72.59 Aligned_cols=100 Identities=9% Similarity=0.017 Sum_probs=65.0
Q ss_pred eeEeeeccCCCcccCcceeee---------eEEEEEecCCCee--eeCCCchhchhhhhhhhcCCcEEEEEEeCCCh---
Q psy15036 55 LLKHLKYLGTGTHGKTVGIVF---------PAISVTYSIGPRY--FRFPLVSRFLSLTTGLYRGTMGFLLIFDVTNE--- 120 (179)
Q Consensus 55 ~~~~~~~~~~~~~~~Ti~~~~---------~~k~v~~~~~~~i--wDt~G~e~~~~~~~~~~~~~~~vilvyDit~~--- 120 (179)
++.++...+.++|.||...-+ ....+.++ +..+ ||++||...+..+..||.+++++|+|.|+++-
T Consensus 122 f~~~~~ri~~~~y~Pt~~Dil~~r~~T~Gi~~~~f~~~-~~~~~~~DvgGq~~~R~kW~~~f~~v~~iifvv~lsd~d~~ 200 (317)
T cd00066 122 FLDNLDRISDPDYIPTEQDILRARVKTTGIVETKFTIK-NLKFRMFDVGGQRSERKKWIHCFEDVTAIIFVVALSEYDQV 200 (317)
T ss_pred HHHhHHHHhCCCCCCChhHheeeecccCCeeEEEEEec-ceEEEEECCCCCcccchhHHHHhCCCCEEEEEEEchhcccc
Confidence 334444445566666543211 12345556 5555 99999999999999999999999999999874
Q ss_pred -------hhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCC
Q psy15036 121 -------NSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQR 160 (179)
Q Consensus 121 -------~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~ 160 (179)
+.++.....++.+..... ....|++|++||.|+-.
T Consensus 201 ~~e~~~~nrl~esl~~f~~i~~~~~-----~~~~pill~~NK~D~f~ 242 (317)
T cd00066 201 LFEDESTNRMQESLNLFDSICNSRW-----FANTSIILFLNKKDLFE 242 (317)
T ss_pred cccCCcchHHHHHHHHHHHHHhCcc-----ccCCCEEEEccChHHHH
Confidence 344444444444433211 11268889999999743
No 224
>TIGR00485 EF-Tu translation elongation factor TU. This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=98.38 E-value=2.4e-06 Score=72.40 Aligned_cols=79 Identities=11% Similarity=0.076 Sum_probs=48.1
Q ss_pred CCee--eeCCCchhchhhhhhhhcCCcEEEEEEeCCC---hhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcC
Q psy15036 85 GPRY--FRFPLVSRFLSLTTGLYRGTMGFLLIFDVTN---ENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQ 159 (179)
Q Consensus 85 ~~~i--wDt~G~e~~~~~~~~~~~~~~~vilvyDit~---~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~ 159 (179)
+..+ |||+|+++|......-...+|++++|+|.+. +++.+.+ ..+... .- |++|++.||+|+.
T Consensus 74 ~~~~~liDtpGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~qt~e~l----~~~~~~-gi-------~~iIvvvNK~Dl~ 141 (394)
T TIGR00485 74 NRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSATDGPMPQTREHI----LLARQV-GV-------PYIVVFLNKCDMV 141 (394)
T ss_pred CEEEEEEECCchHHHHHHHHHHHhhCCEEEEEEECCCCCcHHHHHHH----HHHHHc-CC-------CEEEEEEEecccC
Confidence 4445 9999999986444334556799999999987 3333322 223322 11 5666789999986
Q ss_pred CCCCCC---HHHHHHHHhh
Q psy15036 160 RCREVV---TPDQIMFGST 175 (179)
Q Consensus 160 ~~r~Vs---~~e~~~~a~~ 175 (179)
+..+.. .+|.+++.++
T Consensus 142 ~~~~~~~~~~~~i~~~l~~ 160 (394)
T TIGR00485 142 DDEELLELVEMEVRELLSE 160 (394)
T ss_pred CHHHHHHHHHHHHHHHHHh
Confidence 432211 2355555544
No 225
>TIGR00503 prfC peptide chain release factor 3. This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.
Probab=98.36 E-value=2.5e-06 Score=74.86 Aligned_cols=71 Identities=11% Similarity=-0.015 Sum_probs=50.3
Q ss_pred EEEecCCCee--eeCCCchhchhhhhhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCC
Q psy15036 79 SVTYSIGPRY--FRFPLVSRFLSLTTGLYRGTMGFLLIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLE 156 (179)
Q Consensus 79 ~v~~~~~~~i--wDt~G~e~~~~~~~~~~~~~~~vilvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~ 156 (179)
.+..+ +..+ |||+|++.|.......++.+|++|+|+|.++. -......+++..+. .+ .|+++++||+
T Consensus 74 ~~~~~-~~~inliDTPG~~df~~~~~~~l~~aD~aIlVvDa~~g-v~~~t~~l~~~~~~---~~------~PiivviNKi 142 (527)
T TIGR00503 74 QFPYR-DCLVNLLDTPGHEDFSEDTYRTLTAVDNCLMVIDAAKG-VETRTRKLMEVTRL---RD------TPIFTFMNKL 142 (527)
T ss_pred EEeeC-CeEEEEEECCChhhHHHHHHHHHHhCCEEEEEEECCCC-CCHHHHHHHHHHHh---cC------CCEEEEEECc
Confidence 34445 5555 99999999988777789999999999998863 11223444443332 22 5788899999
Q ss_pred CcCC
Q psy15036 157 LLQR 160 (179)
Q Consensus 157 Dl~~ 160 (179)
|+..
T Consensus 143 D~~~ 146 (527)
T TIGR00503 143 DRDI 146 (527)
T ss_pred cccC
Confidence 9864
No 226
>smart00275 G_alpha G protein alpha subunit. Subunit of G proteins that contains the guanine nucleotide binding site
Probab=98.36 E-value=2.4e-06 Score=71.15 Aligned_cols=84 Identities=10% Similarity=-0.019 Sum_probs=59.4
Q ss_pred CcceeeeeEEEEEecCCCee--eeCCCchhchhhhhhhhcCCcEEEEEEeCCCh----------hhHHHHHHHHHHHHHH
Q psy15036 69 KTVGIVFPAISVTYSIGPRY--FRFPLVSRFLSLTTGLYRGTMGFLLIFDVTNE----------NSFKDVEKWLLQIKVM 136 (179)
Q Consensus 69 ~Ti~~~~~~k~v~~~~~~~i--wDt~G~e~~~~~~~~~~~~~~~vilvyDit~~----------~Sf~~l~~w~~~i~~~ 136 (179)
||.|+. ...+.++ +..+ ||.+||...+..|..||.+++++|+|.|+++- +.++.....++.+...
T Consensus 170 ~T~Gi~--~~~f~~~-~~~~~~~DvgGqr~~R~kW~~~f~~v~~IiFvvdlSd~d~~~~Ed~~~nrl~esl~~f~~l~~~ 246 (342)
T smart00275 170 PTTGIQ--ETAFIVK-KLFFRMFDVGGQRSERKKWIHCFDNVTAIIFCVALSEYDQVLEEDESTNRMQESLNLFESICNS 246 (342)
T ss_pred CccceE--EEEEEEC-CeEEEEEecCCchhhhhhHHHHhCCCCEEEEEEECcccccchhccCcchHHHHHHHHHHHHHcC
Confidence 355543 3456666 6666 99999999999999999999999999999973 3455554444444432
Q ss_pred hCCccCccccceEEEEeeCCCcCC
Q psy15036 137 DGALFTHFELQIVFMRGCLELLQR 160 (179)
Q Consensus 137 ~~~~~~~~~~~~iilvGnK~Dl~~ 160 (179)
.. ....|++|+.||.|+-.
T Consensus 247 ~~-----~~~~piil~~NK~D~~~ 265 (342)
T smart00275 247 RW-----FANTSIILFLNKIDLFE 265 (342)
T ss_pred cc-----ccCCcEEEEEecHHhHH
Confidence 11 12268888899999853
No 227
>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily. EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in
Probab=98.28 E-value=2.8e-06 Score=66.28 Aligned_cols=74 Identities=12% Similarity=0.002 Sum_probs=48.9
Q ss_pred EEEEEecCCCee--eeCCCchhchhhhhhhhcCCcEEEEEEeCCChhh---H----HHHHHHHHHHHHHhCCccCccccc
Q psy15036 77 AISVTYSIGPRY--FRFPLVSRFLSLTTGLYRGTMGFLLIFDVTNENS---F----KDVEKWLLQIKVMDGALFTHFELQ 147 (179)
Q Consensus 77 ~k~v~~~~~~~i--wDt~G~e~~~~~~~~~~~~~~~vilvyDit~~~S---f----~~l~~w~~~i~~~~~~~~~~~~~~ 147 (179)
...+... +..+ |||+|+..|........+.+|++|+|+|.++.+. | +....|. ... .... +
T Consensus 69 ~~~~~~~-~~~i~liDtpG~~~~~~~~~~~~~~~d~~i~VvDa~~~~~~~~~~~~~~~~~~~~-~~~-~~~~-------~ 138 (219)
T cd01883 69 LAKFETE-KYRFTILDAPGHRDFVPNMITGASQADVAVLVVDARKGEFEAGFEKGGQTREHAL-LAR-TLGV-------K 138 (219)
T ss_pred eEEEeeC-CeEEEEEECCChHHHHHHHHHHhhhCCEEEEEEECCCCccccccccccchHHHHH-HHH-HcCC-------C
Confidence 3455566 6666 9999998887655566788999999999988421 1 1122222 222 2222 4
Q ss_pred eEEEEeeCCCcCC
Q psy15036 148 IVFMRGCLELLQR 160 (179)
Q Consensus 148 ~iilvGnK~Dl~~ 160 (179)
|++++.||.|+..
T Consensus 139 ~iiivvNK~Dl~~ 151 (219)
T cd01883 139 QLIVAVNKMDDVT 151 (219)
T ss_pred eEEEEEEcccccc
Confidence 7788899999963
No 228
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=98.23 E-value=1.5e-06 Score=64.54 Aligned_cols=118 Identities=8% Similarity=-0.032 Sum_probs=67.8
Q ss_pred eEEE-EeCCCCc---eeEeeeccCCC-cccCcceeeeeEEEEEecCCCee--eeCCCchhch------hhhhhhh--cCC
Q psy15036 44 FGTQ-LGRRGIP---LLKHLKYLGTG-THGKTVGIVFPAISVTYSIGPRY--FRFPLVSRFL------SLTTGLY--RGT 108 (179)
Q Consensus 44 ~Kiv-lG~~gvG---~~~~~~~~~~~-~~~~Ti~~~~~~k~v~~~~~~~i--wDt~G~e~~~------~~~~~~~--~~~ 108 (179)
++|. +|.++|| ++..+.+.... ..-|-..++.....+.++ +..+ .|++|--... .+...|+ ...
T Consensus 1 i~ialvG~PNvGKStLfN~Ltg~~~~v~n~pG~Tv~~~~g~~~~~-~~~~~lvDlPG~ysl~~~s~ee~v~~~~l~~~~~ 79 (156)
T PF02421_consen 1 IRIALVGNPNVGKSTLFNALTGAKQKVGNWPGTTVEKKEGIFKLG-DQQVELVDLPGIYSLSSKSEEERVARDYLLSEKP 79 (156)
T ss_dssp -EEEEEESTTSSHHHHHHHHHTTSEEEEESTTSSSEEEEEEEEET-TEEEEEEE----SSSSSSSHHHHHHHHHHHHTSS
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCceecCCCCCCeeeeeEEEEec-CceEEEEECCCcccCCCCCcHHHHHHHHHhhcCC
Confidence 4786 9999999 66666543211 111222234555677778 7777 9999953332 2344454 589
Q ss_pred cEEEEEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCCCCCCCHHHHHHHHhh
Q psy15036 109 MGFLLIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQRCREVVTPDQIMFGST 175 (179)
Q Consensus 109 ~~vilvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~~r~Vs~~e~~~~a~~ 175 (179)
|++|.|.|.++.+.= -....++.+. . .|+++|.||+|+..++.+..+ ...+++.
T Consensus 80 D~ii~VvDa~~l~r~---l~l~~ql~e~---g------~P~vvvlN~~D~a~~~g~~id-~~~Ls~~ 133 (156)
T PF02421_consen 80 DLIIVVVDATNLERN---LYLTLQLLEL---G------IPVVVVLNKMDEAERKGIEID-AEKLSER 133 (156)
T ss_dssp SEEEEEEEGGGHHHH---HHHHHHHHHT---T------SSEEEEEETHHHHHHTTEEE--HHHHHHH
T ss_pred CEEEEECCCCCHHHH---HHHHHHHHHc---C------CCEEEEEeCHHHHHHcCCEEC-HHHHHHH
Confidence 999999999874322 2333444433 2 478889999999765554432 4444443
No 229
>TIGR00490 aEF-2 translation elongation factor aEF-2. This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.
Probab=98.22 E-value=2.7e-06 Score=77.23 Aligned_cols=109 Identities=10% Similarity=-0.123 Sum_probs=66.0
Q ss_pred ceeeEEE-EeCCCCc---eeEeee----------------ccCCCc---ccCcceeeeeEEEEEecC-CCee--eeCCCc
Q psy15036 41 SFNFGTQ-LGRRGIP---LLKHLK----------------YLGTGT---HGKTVGIVFPAISVTYSI-GPRY--FRFPLV 94 (179)
Q Consensus 41 ~~~~Kiv-lG~~gvG---~~~~~~----------------~~~~~~---~~~Ti~~~~~~k~v~~~~-~~~i--wDt~G~ 94 (179)
+...+|+ +|..++| +..++. ..+.+. ...|+...+....+.+.. +..+ |||+|+
T Consensus 17 ~~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~~~~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~i~liDTPG~ 96 (720)
T TIGR00490 17 KFIRNIGIVAHIDHGKTTLSDNLLAGAGMISEELAGQQLYLDFDEQEQERGITINAANVSMVHEYEGNEYLINLIDTPGH 96 (720)
T ss_pred ccccEEEEEEeCCCCHHHHHHHHHHHcCCCchhcCCceeecCCCHHHHhhcchhhcccceeEEeecCCceEEEEEeCCCc
Confidence 3467886 9999999 333322 111111 334665444333333330 3334 999999
Q ss_pred hhchhhhhhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcC
Q psy15036 95 SRFLSLTTGLYRGTMGFLLIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQ 159 (179)
Q Consensus 95 e~~~~~~~~~~~~~~~vilvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~ 159 (179)
.+|.......++.+|++++|+|...--..+....|.. +. ..+ .|++++.||+|..
T Consensus 97 ~~f~~~~~~al~~aD~~llVvda~~g~~~~t~~~~~~-~~---~~~------~p~ivviNKiD~~ 151 (720)
T TIGR00490 97 VDFGGDVTRAMRAVDGAIVVVCAVEGVMPQTETVLRQ-AL---KEN------VKPVLFINKVDRL 151 (720)
T ss_pred cccHHHHHHHHHhcCEEEEEEecCCCCCccHHHHHHH-HH---HcC------CCEEEEEEChhcc
Confidence 9998888889999999999999877322222222221 11 122 3556889999985
No 230
>TIGR00484 EF-G translation elongation factor EF-G. After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.
Probab=98.16 E-value=7.4e-06 Score=74.10 Aligned_cols=73 Identities=15% Similarity=0.019 Sum_probs=53.7
Q ss_pred EEEEEecCCCee--eeCCCchhchhhhhhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEee
Q psy15036 77 AISVTYSIGPRY--FRFPLVSRFLSLTTGLYRGTMGFLLIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGC 154 (179)
Q Consensus 77 ~k~v~~~~~~~i--wDt~G~e~~~~~~~~~~~~~~~vilvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGn 154 (179)
...+..+ +..+ |||+|+.+|.......++.+|++++|+|.++....+....| ..+.+. . .|+++++|
T Consensus 67 ~~~~~~~-~~~i~liDTPG~~~~~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~-~~~~~~---~------~p~ivviN 135 (689)
T TIGR00484 67 ATTVFWK-GHRINIIDTPGHVDFTVEVERSLRVLDGAVAVLDAVGGVQPQSETVW-RQANRY---E------VPRIAFVN 135 (689)
T ss_pred eEEEEEC-CeEEEEEECCCCcchhHHHHHHHHHhCEEEEEEeCCCCCChhHHHHH-HHHHHc---C------CCEEEEEE
Confidence 3455566 6666 99999999988888899999999999999886555543333 233322 2 46678899
Q ss_pred CCCcCC
Q psy15036 155 LELLQR 160 (179)
Q Consensus 155 K~Dl~~ 160 (179)
|+|+..
T Consensus 136 K~D~~~ 141 (689)
T TIGR00484 136 KMDKTG 141 (689)
T ss_pred CCCCCC
Confidence 999975
No 231
>PRK14845 translation initiation factor IF-2; Provisional
Probab=98.15 E-value=5.2e-06 Score=77.55 Aligned_cols=59 Identities=12% Similarity=-0.011 Sum_probs=48.6
Q ss_pred eeCCCchhchhhhhhhhcCCcEEEEEEeCCC---hhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCC
Q psy15036 89 FRFPLVSRFLSLTTGLYRGTMGFLLIFDVTN---ENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQR 160 (179)
Q Consensus 89 wDt~G~e~~~~~~~~~~~~~~~vilvyDit~---~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~ 160 (179)
|||+|++.|..++...++.+|++++|+|.++ +++++.+..+ .. .+ .|+++|+||+|+..
T Consensus 531 iDTPGhe~F~~lr~~g~~~aDivlLVVDa~~Gi~~qT~e~I~~l----k~---~~------iPiIVViNKiDL~~ 592 (1049)
T PRK14845 531 IDTPGHEAFTSLRKRGGSLADLAVLVVDINEGFKPQTIEAINIL----RQ---YK------TPFVVAANKIDLIP 592 (1049)
T ss_pred EECCCcHHHHHHHHhhcccCCEEEEEEECcccCCHhHHHHHHHH----HH---cC------CCEEEEEECCCCcc
Confidence 9999999999998888999999999999987 7777776532 22 12 47889999999964
No 232
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=98.12 E-value=2.3e-05 Score=54.63 Aligned_cols=94 Identities=13% Similarity=0.136 Sum_probs=55.8
Q ss_pred EEE-EeCCCCc---eeEeeeccC----CCcccCcceeeeeEEEEEecCCCee--eeCCCchhc----------hhhhhhh
Q psy15036 45 GTQ-LGRRGIP---LLKHLKYLG----TGTHGKTVGIVFPAISVTYSIGPRY--FRFPLVSRF----------LSLTTGL 104 (179)
Q Consensus 45 Kiv-lG~~gvG---~~~~~~~~~----~~~~~~Ti~~~~~~k~v~~~~~~~i--wDt~G~e~~----------~~~~~~~ 104 (179)
||+ +|..|+| +++.+.+.. ......|... ....+.++ +..+ +||+|-..- ..... .
T Consensus 1 ~V~iiG~~~~GKSTlin~l~~~~~~~~~~~~~~T~~~--~~~~~~~~-~~~~~~vDtpG~~~~~~~~~~~~~~~~~~~-~ 76 (116)
T PF01926_consen 1 RVAIIGRPNVGKSTLINALTGKKLAKVSNIPGTTRDP--VYGQFEYN-NKKFILVDTPGINDGESQDNDGKEIRKFLE-Q 76 (116)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSTSSEESSSTTSSSSE--EEEEEEET-TEEEEEEESSSCSSSSHHHHHHHHHHHHHH-H
T ss_pred CEEEECCCCCCHHHHHHHHhccccccccccccceeee--eeeeeeec-eeeEEEEeCCCCcccchhhHHHHHHHHHHH-H
Confidence 576 9999999 555555321 1112223332 22455667 7776 999996321 12333 3
Q ss_pred hcCCcEEEEEEeCCCh--hhHHHHHHHHHHHHHHhCCccCccccceEEEEeeC
Q psy15036 105 YRGTMGFLLIFDVTNE--NSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCL 155 (179)
Q Consensus 105 ~~~~~~vilvyDit~~--~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK 155 (179)
+..+|++++|+|.+++ ++..++-+| ++ .. .|+++|-||
T Consensus 77 ~~~~d~ii~vv~~~~~~~~~~~~~~~~---l~---~~-------~~~i~v~NK 116 (116)
T PF01926_consen 77 ISKSDLIIYVVDASNPITEDDKNILRE---LK---NK-------KPIILVLNK 116 (116)
T ss_dssp HCTESEEEEEEETTSHSHHHHHHHHHH---HH---TT-------SEEEEEEES
T ss_pred HHHCCEEEEEEECCCCCCHHHHHHHHH---Hh---cC-------CCEEEEEcC
Confidence 4789999999998774 233443333 32 22 588888898
No 233
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=98.08 E-value=1.9e-05 Score=63.74 Aligned_cols=72 Identities=13% Similarity=-0.073 Sum_probs=50.3
Q ss_pred EEEEecCCCee--eeCCCchhchhhhhhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeC
Q psy15036 78 ISVTYSIGPRY--FRFPLVSRFLSLTTGLYRGTMGFLLIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCL 155 (179)
Q Consensus 78 k~v~~~~~~~i--wDt~G~e~~~~~~~~~~~~~~~vilvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK 155 (179)
..+..+ +..+ |||+|+..|.......++.+|++++|.|..+.-.-. ....+..+.+. + .|++++.||
T Consensus 57 ~~~~~~-~~~i~liDTPG~~df~~~~~~~l~~aD~ailVVDa~~g~~~~-t~~~~~~~~~~---~------~p~ivviNK 125 (270)
T cd01886 57 TTCFWK-DHRINIIDTPGHVDFTIEVERSLRVLDGAVAVFDAVAGVEPQ-TETVWRQADRY---N------VPRIAFVNK 125 (270)
T ss_pred EEEEEC-CEEEEEEECCCcHHHHHHHHHHHHHcCEEEEEEECCCCCCHH-HHHHHHHHHHc---C------CCEEEEEEC
Confidence 445556 6666 999999999888888999999999999987642211 12233333322 2 366788999
Q ss_pred CCcCC
Q psy15036 156 ELLQR 160 (179)
Q Consensus 156 ~Dl~~ 160 (179)
+|+.+
T Consensus 126 ~D~~~ 130 (270)
T cd01886 126 MDRTG 130 (270)
T ss_pred CCCCC
Confidence 99864
No 234
>PLN00043 elongation factor 1-alpha; Provisional
Probab=98.06 E-value=2.8e-05 Score=67.05 Aligned_cols=86 Identities=9% Similarity=-0.117 Sum_probs=55.1
Q ss_pred CCee--eeCCCchhchhhhhhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHh----CCccCccccceEEEEeeCCCc
Q psy15036 85 GPRY--FRFPLVSRFLSLTTGLYRGTMGFLLIFDVTNENSFKDVEKWLLQIKVMD----GALFTHFELQIVFMRGCLELL 158 (179)
Q Consensus 85 ~~~i--wDt~G~e~~~~~~~~~~~~~~~vilvyDit~~~Sf~~l~~w~~~i~~~~----~~~~~~~~~~~iilvGnK~Dl 158 (179)
+..+ .|++|+++|.......+..+|++|+|+|.++ .+|+..-.|..+.+++. ... .+++|++.||+|+
T Consensus 84 ~~~i~liDtPGh~df~~~~~~g~~~aD~aIlVVda~~-G~~e~g~~~~~qT~eh~~~~~~~g-----i~~iIV~vNKmD~ 157 (447)
T PLN00043 84 KYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTT-GGFEAGISKDGQTREHALLAFTLG-----VKQMICCCNKMDA 157 (447)
T ss_pred CEEEEEEECCCHHHHHHHHHhhhhhccEEEEEEEccc-CceecccCCCchHHHHHHHHHHcC-----CCcEEEEEEcccC
Confidence 4445 8999999998888888999999999999886 45543222222222111 111 1467888999998
Q ss_pred CCCCCCC-------HHHHHHHHhhhC
Q psy15036 159 QRCREVV-------TPDQIMFGSTQS 177 (179)
Q Consensus 159 ~~~r~Vs-------~~e~~~~a~~~~ 177 (179)
.+ ...+ .+|.+++.++.+
T Consensus 158 ~~-~~~~~~~~~~i~~ei~~~l~~~g 182 (447)
T PLN00043 158 TT-PKYSKARYDEIVKEVSSYLKKVG 182 (447)
T ss_pred Cc-hhhhHHHHHHHHHHHHHHHHHcC
Confidence 52 1222 355666665543
No 235
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=98.05 E-value=2.9e-05 Score=58.93 Aligned_cols=65 Identities=12% Similarity=0.007 Sum_probs=46.2
Q ss_pred CCee--eeCCCchhchhhhhhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcC
Q psy15036 85 GPRY--FRFPLVSRFLSLTTGLYRGTMGFLLIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQ 159 (179)
Q Consensus 85 ~~~i--wDt~G~e~~~~~~~~~~~~~~~vilvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~ 159 (179)
+..+ +|++|+..|......-.+.+|++|+|.|..+.-.-.. ...+..+... + .|+++|.||+|+.
T Consensus 69 ~~~i~~iDtPG~~~f~~~~~~~~~~~D~ailvVda~~g~~~~~-~~~l~~~~~~---~------~p~ivvlNK~D~~ 135 (188)
T PF00009_consen 69 NRKITLIDTPGHEDFIKEMIRGLRQADIAILVVDANDGIQPQT-EEHLKILREL---G------IPIIVVLNKMDLI 135 (188)
T ss_dssp SEEEEEEEESSSHHHHHHHHHHHTTSSEEEEEEETTTBSTHHH-HHHHHHHHHT---T-------SEEEEEETCTSS
T ss_pred ccceeecccccccceeecccceecccccceeeeeccccccccc-cccccccccc---c------cceEEeeeeccch
Confidence 5555 9999999998877778999999999999986533222 2222333322 2 4588889999986
No 236
>PRK12736 elongation factor Tu; Reviewed
Probab=98.04 E-value=3.4e-05 Score=65.47 Aligned_cols=67 Identities=12% Similarity=0.079 Sum_probs=42.9
Q ss_pred CCee--eeCCCchhchhhhhhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCC
Q psy15036 85 GPRY--FRFPLVSRFLSLTTGLYRGTMGFLLIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQR 160 (179)
Q Consensus 85 ~~~i--wDt~G~e~~~~~~~~~~~~~~~vilvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~ 160 (179)
+..+ +||+|+++|......-...+|++++|+|.+..-. ......+..+... +- |.+|++.||+|+.+
T Consensus 74 ~~~i~~iDtPGh~~f~~~~~~~~~~~d~~llVvd~~~g~~-~~t~~~~~~~~~~-g~-------~~~IvviNK~D~~~ 142 (394)
T PRK12736 74 KRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPM-PQTREHILLARQV-GV-------PYLVVFLNKVDLVD 142 (394)
T ss_pred CcEEEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCc-hhHHHHHHHHHHc-CC-------CEEEEEEEecCCcc
Confidence 5555 9999999886544445578899999999876311 1112222333332 11 45778899999864
No 237
>KOG0090|consensus
Probab=98.03 E-value=0.00019 Score=55.64 Aligned_cols=109 Identities=16% Similarity=0.133 Sum_probs=68.1
Q ss_pred EEE-EeCCCCc---eeEeeeccCCCcccCccee-eeeEEEEEecCCCee--eeCCCchhchhhhhhhhc---CCcEEEEE
Q psy15036 45 GTQ-LGRRGIP---LLKHLKYLGTGTHGKTVGI-VFPAISVTYSIGPRY--FRFPLVSRFLSLTTGLYR---GTMGFLLI 114 (179)
Q Consensus 45 Kiv-lG~~gvG---~~~~~~~~~~~~~~~Ti~~-~~~~k~v~~~~~~~i--wDt~G~e~~~~~~~~~~~---~~~~vilv 114 (179)
.|+ +|..++| ++..+.. ..+.+|+-. +-..-.+.++ +... .|.+|+++.+.-...|++ .+-++|+|
T Consensus 40 ~Vll~Gl~dSGKT~LF~qL~~---gs~~~TvtSiepn~a~~r~g-s~~~~LVD~PGH~rlR~kl~e~~~~~~~akaiVFV 115 (238)
T KOG0090|consen 40 AVLLVGLSDSGKTSLFTQLIT---GSHRGTVTSIEPNEATYRLG-SENVTLVDLPGHSRLRRKLLEYLKHNYSAKAIVFV 115 (238)
T ss_pred cEEEEecCCCCceeeeeehhc---CCccCeeeeeccceeeEeec-CcceEEEeCCCcHHHHHHHHHHccccccceeEEEE
Confidence 466 9999999 4444432 244444321 1112344455 4443 899999999877767777 68888988
Q ss_pred EeCC-ChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCC
Q psy15036 115 FDVT-NENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQR 160 (179)
Q Consensus 115 yDit-~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~ 160 (179)
.|.. ...-...+..++.++....... ...||++++.||.|+..
T Consensus 116 VDSa~f~k~vrdvaefLydil~~~~~~---~~~~~vLIaCNKqDl~t 159 (238)
T KOG0090|consen 116 VDSATFLKNVRDVAEFLYDILLDSRVK---KNKPPVLIACNKQDLFT 159 (238)
T ss_pred EeccccchhhHHHHHHHHHHHHhhccc---cCCCCEEEEecchhhhh
Confidence 8753 3344555556666665444210 02278889999999854
No 238
>PRK12735 elongation factor Tu; Reviewed
Probab=98.01 E-value=4.8e-05 Score=64.56 Aligned_cols=67 Identities=9% Similarity=0.076 Sum_probs=43.2
Q ss_pred CCee--eeCCCchhchhhhhhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCC
Q psy15036 85 GPRY--FRFPLVSRFLSLTTGLYRGTMGFLLIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQR 160 (179)
Q Consensus 85 ~~~i--wDt~G~e~~~~~~~~~~~~~~~vilvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~ 160 (179)
+..+ +||+|+++|......-...+|++++|+|...... ......+..+... +- |.++++.||+|+.+
T Consensus 74 ~~~i~~iDtPGh~~f~~~~~~~~~~aD~~llVvda~~g~~-~qt~e~l~~~~~~-gi-------~~iivvvNK~Dl~~ 142 (396)
T PRK12735 74 NRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPM-PQTREHILLARQV-GV-------PYIVVFLNKCDMVD 142 (396)
T ss_pred CcEEEEEECCCHHHHHHHHHhhhccCCEEEEEEECCCCCc-hhHHHHHHHHHHc-CC-------CeEEEEEEecCCcc
Confidence 5555 9999999886555555678899999999886322 1222233333322 11 45666789999964
No 239
>PLN03126 Elongation factor Tu; Provisional
Probab=97.93 E-value=8.5e-05 Score=64.56 Aligned_cols=109 Identities=9% Similarity=0.039 Sum_probs=64.4
Q ss_pred eeeEEE-EeCCCCc---eeEeeec-------cC----------CCcccCcceeeeeEEEEEecCCCee--eeCCCchhch
Q psy15036 42 FNFGTQ-LGRRGIP---LLKHLKY-------LG----------TGTHGKTVGIVFPAISVTYSIGPRY--FRFPLVSRFL 98 (179)
Q Consensus 42 ~~~Kiv-lG~~gvG---~~~~~~~-------~~----------~~~~~~Ti~~~~~~k~v~~~~~~~i--wDt~G~e~~~ 98 (179)
..++|+ +|..++| ++.++.. .. .++...-+.++.....+..+ +..+ +|++|+++|.
T Consensus 80 ~~~ni~iiGhvd~GKSTLi~~Ll~~~~~i~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~~-~~~i~liDtPGh~~f~ 158 (478)
T PLN03126 80 PHVNIGTIGHVDHGKTTLTAALTMALASMGGSAPKKYDEIDAAPEERARGITINTATVEYETE-NRHYAHVDCPGHADYV 158 (478)
T ss_pred CeeEEEEECCCCCCHHHHHHHHHHhhhhhccccccccccccCChhHHhCCeeEEEEEEEEecC-CcEEEEEECCCHHHHH
Confidence 467887 9999999 3333331 00 11111112222222334445 6666 9999999986
Q ss_pred hhhhhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCC
Q psy15036 99 SLTTGLYRGTMGFLLIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQR 160 (179)
Q Consensus 99 ~~~~~~~~~~~~vilvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~ 160 (179)
.....-...+|++++|+|.+.-.. .....++..+.... - +.+|++.||+|+.+
T Consensus 159 ~~~~~g~~~aD~ailVVda~~G~~-~qt~e~~~~~~~~g-i-------~~iIvvvNK~Dl~~ 211 (478)
T PLN03126 159 KNMITGAAQMDGAILVVSGADGPM-PQTKEHILLAKQVG-V-------PNMVVFLNKQDQVD 211 (478)
T ss_pred HHHHHHHhhCCEEEEEEECCCCCc-HHHHHHHHHHHHcC-C-------CeEEEEEecccccC
Confidence 655556678999999999875422 22233444444331 1 34777899999854
No 240
>PRK12740 elongation factor G; Reviewed
Probab=97.92 E-value=7.9e-05 Score=67.22 Aligned_cols=73 Identities=11% Similarity=-0.018 Sum_probs=55.0
Q ss_pred EEEEEecCCCee--eeCCCchhchhhhhhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEee
Q psy15036 77 AISVTYSIGPRY--FRFPLVSRFLSLTTGLYRGTMGFLLIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGC 154 (179)
Q Consensus 77 ~k~v~~~~~~~i--wDt~G~e~~~~~~~~~~~~~~~vilvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGn 154 (179)
...+..+ +..+ |||+|+..|......+++.+|++++|+|.+...+......|. .+.. .. .|+++|.|
T Consensus 52 ~~~~~~~-~~~i~liDtPG~~~~~~~~~~~l~~aD~vllvvd~~~~~~~~~~~~~~-~~~~---~~------~p~iiv~N 120 (668)
T PRK12740 52 ATTCEWK-GHKINLIDTPGHVDFTGEVERALRVLDGAVVVVCAVGGVEPQTETVWR-QAEK---YG------VPRIIFVN 120 (668)
T ss_pred eEEEEEC-CEEEEEEECCCcHHHHHHHHHHHHHhCeEEEEEeCCCCcCHHHHHHHH-HHHH---cC------CCEEEEEE
Confidence 3455566 6666 999999998887888999999999999999877766555553 2322 12 46778899
Q ss_pred CCCcCC
Q psy15036 155 LELLQR 160 (179)
Q Consensus 155 K~Dl~~ 160 (179)
|+|+..
T Consensus 121 K~D~~~ 126 (668)
T PRK12740 121 KMDRAG 126 (668)
T ss_pred CCCCCC
Confidence 999865
No 241
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=97.91 E-value=1.9e-05 Score=66.18 Aligned_cols=66 Identities=17% Similarity=0.168 Sum_probs=51.1
Q ss_pred chhchhhhhhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCCCCCCCHHHHHHH
Q psy15036 94 VSRFLSLTTGLYRGTMGFLLIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQRCREVVTPDQIMF 172 (179)
Q Consensus 94 ~e~~~~~~~~~~~~~~~vilvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~~r~Vs~~e~~~~ 172 (179)
+++|..+...+++.++++++|+|+.+.. ..|.+++.+.... .|+++|+||+||.. +.+..++.+++
T Consensus 50 ~e~f~~~l~~~~~~~~~Il~VvD~~d~~-----~s~~~~l~~~~~~-------~piilV~NK~DLl~-k~~~~~~~~~~ 115 (360)
T TIGR03597 50 DDDFLNLLNSLGDSNALIVYVVDIFDFE-----GSLIPELKRFVGG-------NPVLLVGNKIDLLP-KSVNLSKIKEW 115 (360)
T ss_pred HHHHHHHHhhcccCCcEEEEEEECcCCC-----CCccHHHHHHhCC-------CCEEEEEEchhhCC-CCCCHHHHHHH
Confidence 5788899999999999999999987654 4577777766544 47889999999965 45666666655
No 242
>TIGR02034 CysN sulfate adenylyltransferase, large subunit. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).
Probab=97.87 E-value=9.4e-05 Score=63.01 Aligned_cols=73 Identities=8% Similarity=-0.059 Sum_probs=46.3
Q ss_pred EEEEecCCCee--eeCCCchhchhhhhhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeC
Q psy15036 78 ISVTYSIGPRY--FRFPLVSRFLSLTTGLYRGTMGFLLIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCL 155 (179)
Q Consensus 78 k~v~~~~~~~i--wDt~G~e~~~~~~~~~~~~~~~vilvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK 155 (179)
..+..+ +..+ +||+|+++|......-+..+|++++|+|.+..-.-+....|. .+... .. ++++++.||
T Consensus 73 ~~~~~~-~~~~~liDtPGh~~f~~~~~~~~~~aD~allVVda~~G~~~qt~~~~~-~~~~~-~~-------~~iivviNK 142 (406)
T TIGR02034 73 RYFSTD-KRKFIVADTPGHEQYTRNMATGASTADLAVLLVDARKGVLEQTRRHSY-IASLL-GI-------RHVVLAVNK 142 (406)
T ss_pred EEEccC-CeEEEEEeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCCccccHHHHH-HHHHc-CC-------CcEEEEEEe
Confidence 344445 5566 999999999655555678999999999986532111111121 12222 22 467888999
Q ss_pred CCcCC
Q psy15036 156 ELLQR 160 (179)
Q Consensus 156 ~Dl~~ 160 (179)
+|+.+
T Consensus 143 ~D~~~ 147 (406)
T TIGR02034 143 MDLVD 147 (406)
T ss_pred ccccc
Confidence 99864
No 243
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=97.85 E-value=0.00015 Score=55.68 Aligned_cols=66 Identities=11% Similarity=0.082 Sum_probs=44.5
Q ss_pred CCee--eeCCCchhchhhhhhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcC
Q psy15036 85 GPRY--FRFPLVSRFLSLTTGLYRGTMGFLLIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQ 159 (179)
Q Consensus 85 ~~~i--wDt~G~e~~~~~~~~~~~~~~~vilvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~ 159 (179)
+..+ .||+|+..|......-...+|++++|.|.+..-. ......+..+.+.. . |++|++-||.|+.
T Consensus 64 ~~~i~~iDtPG~~~~~~~~~~~~~~~D~~ilVvda~~g~~-~~~~~~~~~~~~~~-~-------~~iIvviNK~D~~ 131 (195)
T cd01884 64 NRHYAHVDCPGHADYIKNMITGAAQMDGAILVVSATDGPM-PQTREHLLLARQVG-V-------PYIVVFLNKADMV 131 (195)
T ss_pred CeEEEEEECcCHHHHHHHHHHHhhhCCEEEEEEECCCCCc-HHHHHHHHHHHHcC-C-------CcEEEEEeCCCCC
Confidence 5555 9999999887766667889999999999876321 11222333333322 1 4577888999985
No 244
>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional
Probab=97.84 E-value=0.00015 Score=62.93 Aligned_cols=73 Identities=7% Similarity=-0.094 Sum_probs=45.1
Q ss_pred EEEEecCCCee--eeCCCchhchhhhhhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeC
Q psy15036 78 ISVTYSIGPRY--FRFPLVSRFLSLTTGLYRGTMGFLLIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCL 155 (179)
Q Consensus 78 k~v~~~~~~~i--wDt~G~e~~~~~~~~~~~~~~~vilvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK 155 (179)
..+..+ +..+ +||+|+++|......-.+.+|++++|+|.+..-.-.....| ..+.. ... +++|++.||
T Consensus 100 ~~~~~~-~~~i~~iDTPGh~~f~~~~~~~l~~aD~allVVDa~~G~~~qt~~~~-~l~~~-lg~-------~~iIvvvNK 169 (474)
T PRK05124 100 RYFSTE-KRKFIIADTPGHEQYTRNMATGASTCDLAILLIDARKGVLDQTRRHS-FIATL-LGI-------KHLVVAVNK 169 (474)
T ss_pred EEeccC-CcEEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCccccchHHH-HHHHH-hCC-------CceEEEEEe
Confidence 344455 5566 99999999865444446899999999998653111111111 11222 222 467788999
Q ss_pred CCcCC
Q psy15036 156 ELLQR 160 (179)
Q Consensus 156 ~Dl~~ 160 (179)
+|+.+
T Consensus 170 iD~~~ 174 (474)
T PRK05124 170 MDLVD 174 (474)
T ss_pred ecccc
Confidence 99964
No 245
>KOG1707|consensus
Probab=97.83 E-value=7.4e-05 Score=65.21 Aligned_cols=124 Identities=16% Similarity=0.058 Sum_probs=76.1
Q ss_pred eeEEE-EeCCCCc---ee-EeeeccCCCcccCcceeeeeEEEEEecCCCe-e---eeCCCchhchhhhhhhhcCCcEEEE
Q psy15036 43 NFGTQ-LGRRGIP---LL-KHLKYLGTGTHGKTVGIVFPAISVTYSIGPR-Y---FRFPLVSRFLSLTTGLYRGTMGFLL 113 (179)
Q Consensus 43 ~~Kiv-lG~~gvG---~~-~~~~~~~~~~~~~Ti~~~~~~k~v~~~~~~~-i---wDt~G~e~~~~~~~~~~~~~~~vil 113 (179)
-|+.. +|..++| ++ .++-..+...+..+....+....+... |+. + -|..-. ....+...- ..+|++++
T Consensus 425 Vf~C~V~G~k~~GKs~lL~sflgr~~~~~~~~~~~~~~avn~v~~~-g~~k~LiL~ei~~~-~~~~l~~ke-~~cDv~~~ 501 (625)
T KOG1707|consen 425 VFQCFVVGPKNCGKSALLQSFLGRSMSDNNTGTTKPRYAVNSVEVK-GQQKYLILREIGED-DQDFLTSKE-AACDVACL 501 (625)
T ss_pred eeeEEEEcCCcCchHHHHHHHhccccccccccCCCCceeeeeeeec-cccceEEEeecCcc-ccccccCcc-ceeeeEEE
Confidence 46665 9999999 33 333333334555565555555555554 333 2 343322 122222222 67899999
Q ss_pred EEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCCCCCCCHHHHHHHHhhhC
Q psy15036 114 IFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQRCREVVTPDQIMFGSTQS 177 (179)
Q Consensus 114 vyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~~r~Vs~~e~~~~a~~~~ 177 (179)
+||.+++.||.-+..-.+..... .. .|+++|+.|+||.+..+...-+-.+|+.++.
T Consensus 502 ~YDsS~p~sf~~~a~v~~~~~~~-~~-------~Pc~~va~K~dlDe~~Q~~~iqpde~~~~~~ 557 (625)
T KOG1707|consen 502 VYDSSNPRSFEYLAEVYNKYFDL-YK-------IPCLMVATKADLDEVPQRYSIQPDEFCRQLG 557 (625)
T ss_pred ecccCCchHHHHHHHHHHHhhhc-cC-------CceEEEeeccccchhhhccCCChHHHHHhcC
Confidence 99999999999987665554433 22 5888999999998755433322267776654
No 246
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=97.81 E-value=7.7e-05 Score=63.65 Aligned_cols=107 Identities=10% Similarity=-0.068 Sum_probs=68.6
Q ss_pred eeEEE-EeCCCCc---eeEeeeccCC---CcccCcceeeeeEEEEEecCCCee--eeCCCchhchh--------hhhhhh
Q psy15036 43 NFGTQ-LGRRGIP---LLKHLKYLGT---GTHGKTVGIVFPAISVTYSIGPRY--FRFPLVSRFLS--------LTTGLY 105 (179)
Q Consensus 43 ~~Kiv-lG~~gvG---~~~~~~~~~~---~~~~~Ti~~~~~~k~v~~~~~~~i--wDt~G~e~~~~--------~~~~~~ 105 (179)
-+|++ +|.++|| +++.+.+... .+..-|. .|.....+.++ |.++ .||+|-..-.. -...-.
T Consensus 217 G~kvvIiG~PNvGKSSLLNaL~~~d~AIVTdI~GTT-RDviee~i~i~-G~pv~l~DTAGiRet~d~VE~iGIeRs~~~i 294 (454)
T COG0486 217 GLKVVIIGRPNVGKSSLLNALLGRDRAIVTDIAGTT-RDVIEEDINLN-GIPVRLVDTAGIRETDDVVERIGIERAKKAI 294 (454)
T ss_pred CceEEEECCCCCcHHHHHHHHhcCCceEecCCCCCc-cceEEEEEEEC-CEEEEEEecCCcccCccHHHHHHHHHHHHHH
Confidence 48897 9999999 4444432211 1122222 35566788899 9999 99999754322 234457
Q ss_pred cCCcEEEEEEeCCChhh-HHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCCCCC
Q psy15036 106 RGTMGFLLIFDVTNENS-FKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQRCRE 163 (179)
Q Consensus 106 ~~~~~vilvyDit~~~S-f~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~~r~ 163 (179)
..||.+++|+|.+.+.+ .+..-.| ..+.+ .|+++|.||.||..+..
T Consensus 295 ~~ADlvL~v~D~~~~~~~~d~~~~~------~~~~~------~~~i~v~NK~DL~~~~~ 341 (454)
T COG0486 295 EEADLVLFVLDASQPLDKEDLALIE------LLPKK------KPIIVVLNKADLVSKIE 341 (454)
T ss_pred HhCCEEEEEEeCCCCCchhhHHHHH------hcccC------CCEEEEEechhcccccc
Confidence 89999999999998622 2221222 22222 47889999999977433
No 247
>cd04165 GTPBP1_like GTPBP1-like. Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and
Probab=97.72 E-value=0.00058 Score=53.60 Aligned_cols=66 Identities=12% Similarity=-0.072 Sum_probs=42.3
Q ss_pred CCee--eeCCCchhchhhhhhhh--cCCcEEEEEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCC
Q psy15036 85 GPRY--FRFPLVSRFLSLTTGLY--RGTMGFLLIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQR 160 (179)
Q Consensus 85 ~~~i--wDt~G~e~~~~~~~~~~--~~~~~vilvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~ 160 (179)
+..+ .|++|+++|......-+ +.+|++++|.|.....+ .....++..+.... .|+++|-||+|+.+
T Consensus 83 ~~~i~liDtpG~~~~~~~~~~~~~~~~~D~~llVvda~~g~~-~~d~~~l~~l~~~~---------ip~ivvvNK~D~~~ 152 (224)
T cd04165 83 SKLVTFIDLAGHERYLKTTLFGLTGYAPDYAMLVVAANAGII-GMTKEHLGLALALN---------IPVFVVVTKIDLAP 152 (224)
T ss_pred CcEEEEEECCCcHHHHHHHHHhhcccCCCEEEEEEECCCCCc-HHHHHHHHHHHHcC---------CCEEEEEECccccC
Confidence 4445 89999999865433333 36899999999876432 22234444444321 35678899999854
No 248
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=97.71 E-value=7.3e-05 Score=56.79 Aligned_cols=64 Identities=11% Similarity=0.104 Sum_probs=43.3
Q ss_pred chhhhhhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCCCCCCCHHHHHHHH
Q psy15036 97 FLSLTTGLYRGTMGFLLIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQRCREVVTPDQIMFG 173 (179)
Q Consensus 97 ~~~~~~~~~~~~~~vilvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~~r~Vs~~e~~~~a 173 (179)
++.+...++++++++++|+|++++.. .|...+...... .|+++|+||+|+.. +....++...++
T Consensus 24 ~~~~l~~~~~~ad~il~VvD~~~~~~-----~~~~~l~~~~~~-------~~~ilV~NK~Dl~~-~~~~~~~~~~~~ 87 (190)
T cd01855 24 ILNLLSSISPKKALVVHVVDIFDFPG-----SLIPRLRLFGGN-------NPVILVGNKIDLLP-KDKNLVRIKNWL 87 (190)
T ss_pred HHHHHHhcccCCcEEEEEEECccCCC-----ccchhHHHhcCC-------CcEEEEEEchhcCC-CCCCHHHHHHHH
Confidence 57788889999999999999987642 244444322222 47789999999965 344444444444
No 249
>PRK12289 GTPase RsgA; Reviewed
Probab=97.66 E-value=0.00016 Score=60.44 Aligned_cols=56 Identities=13% Similarity=0.068 Sum_probs=42.1
Q ss_pred hchhhhhhhhcCCcEEEEEEeCCChh-hHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCC
Q psy15036 96 RFLSLTTGLYRGTMGFLLIFDVTNEN-SFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQR 160 (179)
Q Consensus 96 ~~~~~~~~~~~~~~~vilvyDit~~~-Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~ 160 (179)
+-..+.+..+.++|.+++|+|+++++ ++..+..|+..+.. .+ .|++||.||+||..
T Consensus 78 R~~~L~R~~~aNvD~vLlV~d~~~p~~~~~~LdR~L~~a~~---~~------ip~ILVlNK~DLv~ 134 (352)
T PRK12289 78 RKTELDRPPVANADQILLVFALAEPPLDPWQLSRFLVKAES---TG------LEIVLCLNKADLVS 134 (352)
T ss_pred cccceechhhhcCCEEEEEEECCCCCCCHHHHHHHHHHHHH---CC------CCEEEEEEchhcCC
Confidence 33445666789999999999999876 56677888876632 22 47788899999953
No 250
>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase).
Probab=97.64 E-value=0.00067 Score=55.71 Aligned_cols=119 Identities=8% Similarity=-0.032 Sum_probs=63.1
Q ss_pred ceeeEEE-EeCCCCc---eeEeeeccCC---CcccC-cceeeeeEEEEEecCCCee--eeCCCchhchhh-------hhh
Q psy15036 41 SFNFGTQ-LGRRGIP---LLKHLKYLGT---GTHGK-TVGIVFPAISVTYSIGPRY--FRFPLVSRFLSL-------TTG 103 (179)
Q Consensus 41 ~~~~Kiv-lG~~gvG---~~~~~~~~~~---~~~~~-Ti~~~~~~k~v~~~~~~~i--wDt~G~e~~~~~-------~~~ 103 (179)
...++|+ +|..||| +++.+.+... +.+.+ +.... ......+ +..+ |||+|....... ...
T Consensus 36 ~~~~rIllvGktGVGKSSliNsIlG~~v~~vs~f~s~t~~~~--~~~~~~~-G~~l~VIDTPGL~d~~~~~e~~~~~ik~ 112 (313)
T TIGR00991 36 VSSLTILVMGKGGVGKSSTVNSIIGERIATVSAFQSEGLRPM--MVSRTRA-GFTLNIIDTPGLIEGGYINDQAVNIIKR 112 (313)
T ss_pred ccceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeEE--EEEEEEC-CeEEEEEECCCCCchHHHHHHHHHHHHH
Confidence 3578897 9999999 4444443211 11111 11111 1223346 7777 999997654221 111
Q ss_pred hh--cCCcEEEEEEeCCChhhHHHH-HHHHHHHHHHhCCccCccccceEEEEeeCCCcCCCCCCCHH
Q psy15036 104 LY--RGTMGFLLIFDVTNENSFKDV-EKWLLQIKVMDGALFTHFELQIVFMRGCLELLQRCREVVTP 167 (179)
Q Consensus 104 ~~--~~~~~vilvyDit~~~Sf~~l-~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~~r~Vs~~ 167 (179)
|. .+.|++++|..++... +... ...++.+....+.++. -..|+|-++.|.......+.+
T Consensus 113 ~l~~~g~DvVLyV~rLD~~R-~~~~DkqlLk~Iqe~FG~~iw----~~~IVVfTh~d~~~pd~~~~e 174 (313)
T TIGR00991 113 FLLGKTIDVLLYVDRLDAYR-VDTLDGQVIRAITDSFGKDIW----RKSLVVLTHAQFSPPDGLEYN 174 (313)
T ss_pred HhhcCCCCEEEEEeccCccc-CCHHHHHHHHHHHHHhhhhhh----ccEEEEEECCccCCCCCCCHH
Confidence 22 2689999997665332 3322 3455666655544322 135666788886543344444
No 251
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=97.58 E-value=0.00041 Score=62.32 Aligned_cols=72 Identities=7% Similarity=-0.012 Sum_probs=45.7
Q ss_pred EEEecCCCee--eeCCCchhchhhhhhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCC
Q psy15036 79 SVTYSIGPRY--FRFPLVSRFLSLTTGLYRGTMGFLLIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLE 156 (179)
Q Consensus 79 ~v~~~~~~~i--wDt~G~e~~~~~~~~~~~~~~~vilvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~ 156 (179)
.+..+ +..+ +||+|+++|......-...+|++++|+|.+..-. ......+..+... .. +++|++.||+
T Consensus 98 ~~~~~-~~~~~liDtPG~~~f~~~~~~~~~~aD~~llVvda~~g~~-~~t~e~~~~~~~~-~~-------~~iivvvNK~ 167 (632)
T PRK05506 98 YFATP-KRKFIVADTPGHEQYTRNMVTGASTADLAIILVDARKGVL-TQTRRHSFIASLL-GI-------RHVVLAVNKM 167 (632)
T ss_pred EEccC-CceEEEEECCChHHHHHHHHHHHHhCCEEEEEEECCCCcc-ccCHHHHHHHHHh-CC-------CeEEEEEEec
Confidence 44455 5566 9999999886544455789999999999865321 1111112222222 22 4678889999
Q ss_pred CcCC
Q psy15036 157 LLQR 160 (179)
Q Consensus 157 Dl~~ 160 (179)
|+.+
T Consensus 168 D~~~ 171 (632)
T PRK05506 168 DLVD 171 (632)
T ss_pred cccc
Confidence 9864
No 252
>PLN03127 Elongation factor Tu; Provisional
Probab=97.58 E-value=0.00026 Score=61.10 Aligned_cols=109 Identities=7% Similarity=0.034 Sum_probs=60.9
Q ss_pred eeeEEE-EeCCCCc---eeEeeec-----------------cCCCcccCcceeeeeEEEEEecCCCee--eeCCCchhch
Q psy15036 42 FNFGTQ-LGRRGIP---LLKHLKY-----------------LGTGTHGKTVGIVFPAISVTYSIGPRY--FRFPLVSRFL 98 (179)
Q Consensus 42 ~~~Kiv-lG~~gvG---~~~~~~~-----------------~~~~~~~~Ti~~~~~~k~v~~~~~~~i--wDt~G~e~~~ 98 (179)
..++|. +|....| +...+.. ...++....+.++.....+..+ +.++ .||+|+++|.
T Consensus 60 ~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~-~~~i~~iDtPGh~~f~ 138 (447)
T PLN03127 60 PHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAVAFDEIDKAPEEKARGITIATAHVEYETA-KRHYAHVDCPGHADYV 138 (447)
T ss_pred ceEEEEEECcCCCCHHHHHHHHHhHHHHhhcccceeeccccCChhHhhcCceeeeeEEEEcCC-CeEEEEEECCCccchH
Confidence 467787 9999999 3333321 1111111222222322334444 5555 8999999886
Q ss_pred hhhhhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCC
Q psy15036 99 SLTTGLYRGTMGFLLIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQR 160 (179)
Q Consensus 99 ~~~~~~~~~~~~vilvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~ 160 (179)
.....-...+|++++|.|.+..-. .....-+..+.... - +.+|++-||+|+.+
T Consensus 139 ~~~~~g~~~aD~allVVda~~g~~-~qt~e~l~~~~~~g-i-------p~iIvviNKiDlv~ 191 (447)
T PLN03127 139 KNMITGAAQMDGGILVVSAPDGPM-PQTKEHILLARQVG-V-------PSLVVFLNKVDVVD 191 (447)
T ss_pred HHHHHHHhhCCEEEEEEECCCCCc-hhHHHHHHHHHHcC-C-------CeEEEEEEeeccCC
Confidence 544445567999999999875321 11122222233221 1 34567789999864
No 253
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=97.56 E-value=0.00042 Score=50.64 Aligned_cols=106 Identities=18% Similarity=0.040 Sum_probs=63.9
Q ss_pred EEE-EeCCCCc---eeEeeeccCCCcccCcceeeeeEEEEEecCCCeeeeCCCc----hhchhhhhhhhcCCcEEEEEEe
Q psy15036 45 GTQ-LGRRGIP---LLKHLKYLGTGTHGKTVGIVFPAISVTYSIGPRYFRFPLV----SRFLSLTTGLYRGTMGFLLIFD 116 (179)
Q Consensus 45 Kiv-lG~~gvG---~~~~~~~~~~~~~~~Ti~~~~~~k~v~~~~~~~iwDt~G~----e~~~~~~~~~~~~~~~vilvyD 116 (179)
||+ +|..|+| +.+.+.+. ...|..|..++|.... .||+|. ..|....-..-.+++.++++.|
T Consensus 3 rimliG~~g~GKTTL~q~L~~~-~~~~~KTq~i~~~~~~---------IDTPGEyiE~~~~y~aLi~ta~dad~V~ll~d 72 (143)
T PF10662_consen 3 RIMLIGPSGSGKTTLAQALNGE-EIRYKKTQAIEYYDNT---------IDTPGEYIENPRFYHALIVTAQDADVVLLLQD 72 (143)
T ss_pred eEEEECCCCCCHHHHHHHHcCC-CCCcCccceeEecccE---------EECChhheeCHHHHHHHHHHHhhCCEEEEEec
Confidence 676 9999999 66555543 3466677766654332 377774 2222222334458999999999
Q ss_pred CCChhh-HHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCCCCCCCHHHHHHHHhh
Q psy15036 117 VTNENS-FKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQRCREVVTPDQIMFGST 175 (179)
Q Consensus 117 it~~~S-f~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~~r~Vs~~e~~~~a~~ 175 (179)
.+++.+ |.- .+.+.. . .|+|=|-+|+|+.. .....+.++++-+.
T Consensus 73 at~~~~~~pP------~fa~~f-~-------~pvIGVITK~Dl~~-~~~~i~~a~~~L~~ 117 (143)
T PF10662_consen 73 ATEPRSVFPP------GFASMF-N-------KPVIGVITKIDLPS-DDANIERAKKWLKN 117 (143)
T ss_pred CCCCCccCCc------hhhccc-C-------CCEEEEEECccCcc-chhhHHHHHHHHHH
Confidence 998754 221 111111 1 36777889999973 13344555555444
No 254
>PRK12739 elongation factor G; Reviewed
Probab=97.49 E-value=0.00094 Score=60.63 Aligned_cols=72 Identities=13% Similarity=-0.064 Sum_probs=50.3
Q ss_pred EEEEecCCCee--eeCCCchhchhhhhhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeC
Q psy15036 78 ISVTYSIGPRY--FRFPLVSRFLSLTTGLYRGTMGFLLIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCL 155 (179)
Q Consensus 78 k~v~~~~~~~i--wDt~G~e~~~~~~~~~~~~~~~vilvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK 155 (179)
..+..+ +..+ +||+|+..|.......++.+|++++|.|.+..-.-.... .+..+.+. . .|+|++.||
T Consensus 66 ~~~~~~-~~~i~liDTPG~~~f~~e~~~al~~~D~~ilVvDa~~g~~~qt~~-i~~~~~~~---~------~p~iv~iNK 134 (691)
T PRK12739 66 TTCFWK-GHRINIIDTPGHVDFTIEVERSLRVLDGAVAVFDAVSGVEPQSET-VWRQADKY---G------VPRIVFVNK 134 (691)
T ss_pred EEEEEC-CEEEEEEcCCCHHHHHHHHHHHHHHhCeEEEEEeCCCCCCHHHHH-HHHHHHHc---C------CCEEEEEEC
Confidence 445556 6666 999999988887888899999999999987653332222 22223222 1 356788999
Q ss_pred CCcCC
Q psy15036 156 ELLQR 160 (179)
Q Consensus 156 ~Dl~~ 160 (179)
+|+..
T Consensus 135 ~D~~~ 139 (691)
T PRK12739 135 MDRIG 139 (691)
T ss_pred CCCCC
Confidence 99975
No 255
>CHL00071 tufA elongation factor Tu
Probab=97.45 E-value=0.0025 Score=54.42 Aligned_cols=109 Identities=9% Similarity=0.055 Sum_probs=63.0
Q ss_pred eeeEEE-EeCCCCc---eeEeeecc-----------------CCCcccCcceeeeeEEEEEecCCCee--eeCCCchhch
Q psy15036 42 FNFGTQ-LGRRGIP---LLKHLKYL-----------------GTGTHGKTVGIVFPAISVTYSIGPRY--FRFPLVSRFL 98 (179)
Q Consensus 42 ~~~Kiv-lG~~gvG---~~~~~~~~-----------------~~~~~~~Ti~~~~~~k~v~~~~~~~i--wDt~G~e~~~ 98 (179)
..++|. +|...+| ++..+... ...+....+..+.....+..+ +..+ .||+|+.+|.
T Consensus 11 ~~~~i~i~Gh~d~GKSTL~~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~-~~~~~~iDtPGh~~~~ 89 (409)
T CHL00071 11 PHVNIGTIGHVDHGKTTLTAAITMTLAAKGGAKAKKYDEIDSAPEEKARGITINTAHVEYETE-NRHYAHVDCPGHADYV 89 (409)
T ss_pred CeEEEEEECCCCCCHHHHHHHHHHHhCccccccccccccccCChhhhcCCEeEEccEEEEccC-CeEEEEEECCChHHHH
Confidence 357886 9999999 33333311 011111222222222233344 5555 8999999886
Q ss_pred hhhhhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCC
Q psy15036 99 SLTTGLYRGTMGFLLIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQR 160 (179)
Q Consensus 99 ~~~~~~~~~~~~vilvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~ 160 (179)
.....-...+|++++|.|.+..-. ......+..+.... - |.+|++-||.|+.+
T Consensus 90 ~~~~~~~~~~D~~ilVvda~~g~~-~qt~~~~~~~~~~g-~-------~~iIvvvNK~D~~~ 142 (409)
T CHL00071 90 KNMITGAAQMDGAILVVSAADGPM-PQTKEHILLAKQVG-V-------PNIVVFLNKEDQVD 142 (409)
T ss_pred HHHHHHHHhCCEEEEEEECCCCCc-HHHHHHHHHHHHcC-C-------CEEEEEEEccCCCC
Confidence 655566788999999999875321 22223333333221 1 34778899999864
No 256
>PRK00049 elongation factor Tu; Reviewed
Probab=97.43 E-value=0.0013 Score=55.87 Aligned_cols=67 Identities=7% Similarity=0.036 Sum_probs=44.5
Q ss_pred CCee--eeCCCchhchhhhhhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCC
Q psy15036 85 GPRY--FRFPLVSRFLSLTTGLYRGTMGFLLIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQR 160 (179)
Q Consensus 85 ~~~i--wDt~G~e~~~~~~~~~~~~~~~vilvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~ 160 (179)
+..+ .||+|+.+|......-...+|++++|.|.+..-. ......+..+.... . |.++++.||.|+.+
T Consensus 74 ~~~i~~iDtPG~~~f~~~~~~~~~~aD~~llVVDa~~g~~-~qt~~~~~~~~~~g-~-------p~iiVvvNK~D~~~ 142 (396)
T PRK00049 74 KRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPM-PQTREHILLARQVG-V-------PYIVVFLNKCDMVD 142 (396)
T ss_pred CeEEEEEECCCHHHHHHHHHhhhccCCEEEEEEECCCCCc-hHHHHHHHHHHHcC-C-------CEEEEEEeecCCcc
Confidence 5555 8999999886655566789999999999876422 22233334444322 1 34556789999853
No 257
>PRK00098 GTPase RsgA; Reviewed
Probab=97.41 E-value=0.0002 Score=58.55 Aligned_cols=48 Identities=10% Similarity=0.039 Sum_probs=37.6
Q ss_pred hhcCCcEEEEEEeCCChhhHHHH-HHHHHHHHHHhCCccCccccceEEEEeeCCCcCC
Q psy15036 104 LYRGTMGFLLIFDVTNENSFKDV-EKWLLQIKVMDGALFTHFELQIVFMRGCLELLQR 160 (179)
Q Consensus 104 ~~~~~~~vilvyDit~~~Sf~~l-~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~ 160 (179)
...++|++++|+|+++++++.++ .+|+..+.. .+ .|+++|.||+||.+
T Consensus 77 iaaniD~vllV~d~~~p~~~~~~idr~L~~~~~---~~------ip~iIVlNK~DL~~ 125 (298)
T PRK00098 77 IAANVDQAVLVFAAKEPDFSTDLLDRFLVLAEA---NG------IKPIIVLNKIDLLD 125 (298)
T ss_pred eeecCCEEEEEEECCCCCCCHHHHHHHHHHHHH---CC------CCEEEEEEhHHcCC
Confidence 46899999999999998876664 788877653 22 46778899999963
No 258
>COG1160 Predicted GTPases [General function prediction only]
Probab=97.40 E-value=0.00044 Score=58.96 Aligned_cols=102 Identities=11% Similarity=-0.025 Sum_probs=59.5
Q ss_pred EEE-EeCCCCc---eeEeeeccCCCcccCccee--eeeEEEEEecCCCee--eeCCCchhch---------hhhhhhhcC
Q psy15036 45 GTQ-LGRRGIP---LLKHLKYLGTGTHGKTVGI--VFPAISVTYSIGPRY--FRFPLVSRFL---------SLTTGLYRG 107 (179)
Q Consensus 45 Kiv-lG~~gvG---~~~~~~~~~~~~~~~Ti~~--~~~~k~v~~~~~~~i--wDt~G~e~~~---------~~~~~~~~~ 107 (179)
.|. +|-++|| +++++.+....-...+-|+ |-......+. +..+ .||+|-+... .....-+..
T Consensus 5 ~VAIVGRPNVGKSTLFNRL~g~r~AIV~D~pGvTRDr~y~~~~~~-~~~f~lIDTgGl~~~~~~~l~~~i~~Qa~~Ai~e 83 (444)
T COG1160 5 VVAIVGRPNVGKSTLFNRLTGRRIAIVSDTPGVTRDRIYGDAEWL-GREFILIDTGGLDDGDEDELQELIREQALIAIEE 83 (444)
T ss_pred EEEEECCCCCcHHHHHHHHhCCeeeEeecCCCCccCCccceeEEc-CceEEEEECCCCCcCCchHHHHHHHHHHHHHHHh
Confidence 465 9999999 6666664322221222221 1112344556 6666 8999876322 234445778
Q ss_pred CcEEEEEEeCCCh-hhHH-HHHHHHHHHHHHhCCccCccccceEEEEeeCCCcC
Q psy15036 108 TMGFLLIFDVTNE-NSFK-DVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQ 159 (179)
Q Consensus 108 ~~~vilvyDit~~-~Sf~-~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~ 159 (179)
||++|+|+|...- ...+ .+-+| .+ ... .|+|||.||+|-.
T Consensus 84 ADvilfvVD~~~Git~~D~~ia~~----Lr-~~~-------kpviLvvNK~D~~ 125 (444)
T COG1160 84 ADVILFVVDGREGITPADEEIAKI----LR-RSK-------KPVILVVNKIDNL 125 (444)
T ss_pred CCEEEEEEeCCCCCCHHHHHHHHH----HH-hcC-------CCEEEEEEcccCc
Confidence 9999999997652 2222 22233 22 222 4889999999964
No 259
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=97.35 E-value=0.00024 Score=57.78 Aligned_cols=52 Identities=4% Similarity=-0.042 Sum_probs=42.3
Q ss_pred hhhhhcCCcEEEEEEeCCChh-hHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCCC
Q psy15036 101 TTGLYRGTMGFLLIFDVTNEN-SFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQRC 161 (179)
Q Consensus 101 ~~~~~~~~~~vilvyDit~~~-Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~~ 161 (179)
.+..+.++|.+++|+|++++. ++..+.+|+..+... + .|+++|.||+||.++
T Consensus 72 ~~~i~anvD~vllV~d~~~p~~s~~~ldr~L~~~~~~---~------ip~iIVlNK~DL~~~ 124 (287)
T cd01854 72 EQVIAANVDQLVIVVSLNEPFFNPRLLDRYLVAAEAA---G------IEPVIVLTKADLLDD 124 (287)
T ss_pred ceeEEEeCCEEEEEEEcCCCCCCHHHHHHHHHHHHHc---C------CCEEEEEEHHHCCCh
Confidence 345688999999999999998 999999999877642 2 467788999999653
No 260
>cd01899 Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.
Probab=97.25 E-value=0.00062 Score=56.23 Aligned_cols=72 Identities=11% Similarity=0.162 Sum_probs=46.7
Q ss_pred EEeCCCCc---eeEeeeccC-------CCcccCcceeeeeEEE---------------EEecCCC---ee--eeCCCc--
Q psy15036 47 QLGRRGIP---LLKHLKYLG-------TGTHGKTVGIVFPAIS---------------VTYSIGP---RY--FRFPLV-- 94 (179)
Q Consensus 47 vlG~~gvG---~~~~~~~~~-------~~~~~~Ti~~~~~~k~---------------v~~~~~~---~i--wDt~G~-- 94 (179)
++|.++|| ++..++... -..+.|++|..+.... ...+ +. .+ ||++|.
T Consensus 3 ivG~pnvGKStLfn~lt~~~~~~~~~pftT~~p~~g~~~~~~~~~~~r~~~~~~~~~~~~~~-~~~~v~i~l~D~aGlv~ 81 (318)
T cd01899 3 LVGKPNAGKSTFFNAATLADVEIANYPFTTIDPNVGVGYVRVECPCKELGVSCNPRYGKCID-GKRYVPVELIDVAGLVP 81 (318)
T ss_pred EECCCCCCHHHHHHHHhCCCCcccCCCCccccceeEEEEEecCCCchhhhhhhccccccccc-CcCcceEEEEECCCCCC
Confidence 49999999 555555321 1344677775543211 1122 32 23 999998
Q ss_pred --hhchhhhhhh---hcCCcEEEEEEeCCC
Q psy15036 95 --SRFLSLTTGL---YRGTMGFLLIFDVTN 119 (179)
Q Consensus 95 --e~~~~~~~~~---~~~~~~vilvyDit~ 119 (179)
+++..+...| ++++|++++|+|++.
T Consensus 82 ga~~~~glg~~fL~~ir~aD~ii~Vvd~~~ 111 (318)
T cd01899 82 GAHEGKGLGNKFLDDLRDADALIHVVDASG 111 (318)
T ss_pred CccchhhHHHHHHHHHHHCCEEEEEEeCCC
Confidence 6676676665 999999999999973
No 261
>PRK12288 GTPase RsgA; Reviewed
Probab=97.13 E-value=0.00076 Score=56.39 Aligned_cols=46 Identities=11% Similarity=0.000 Sum_probs=37.0
Q ss_pred cCCcEEEEEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCC
Q psy15036 106 RGTMGFLLIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQR 160 (179)
Q Consensus 106 ~~~~~vilvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~ 160 (179)
-++|++++||+++...+|..+..|+..+.. .. .|++||.||+||..
T Consensus 119 ANvD~vlIV~s~~p~~s~~~Ldr~L~~a~~---~~------i~~VIVlNK~DL~~ 164 (347)
T PRK12288 119 ANIDQIVIVSAVLPELSLNIIDRYLVACET---LG------IEPLIVLNKIDLLD 164 (347)
T ss_pred EEccEEEEEEeCCCCCCHHHHHHHHHHHHh---cC------CCEEEEEECccCCC
Confidence 349999999999999999999999876542 12 35668899999964
No 262
>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts). This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.
Probab=97.11 E-value=0.0046 Score=49.34 Aligned_cols=115 Identities=14% Similarity=0.075 Sum_probs=61.3
Q ss_pred ccCceeeEEE-EeCCCCc---eeEeeeccC---CCccc-CcceeeeeEEEEEecCCCee--eeCCCchhchh--------
Q psy15036 38 KEFSFNFGTQ-LGRRGIP---LLKHLKYLG---TGTHG-KTVGIVFPAISVTYSIGPRY--FRFPLVSRFLS-------- 99 (179)
Q Consensus 38 ~~~~~~~Kiv-lG~~gvG---~~~~~~~~~---~~~~~-~Ti~~~~~~k~v~~~~~~~i--wDt~G~e~~~~-------- 99 (179)
++.+..++|+ +|..||| ++..+.+.. ...+. .|..... .....+ +..+ |||+|-.....
T Consensus 26 ~~~~~~~~IllvG~tGvGKSSliNaLlg~~~~~v~~~~~~T~~~~~--~~~~~~-g~~i~vIDTPGl~~~~~~~~~~~~~ 102 (249)
T cd01853 26 EELDFSLTILVLGKTGVGKSSTINSIFGERKAATSAFQSETLRVRE--VSGTVD-GFKLNIIDTPGLLESVMDQRVNRKI 102 (249)
T ss_pred hhccCCeEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCceEEEEE--EEEEEC-CeEEEEEECCCcCcchhhHHHHHHH
Confidence 3556789997 9999999 444443321 11222 2332222 233455 6666 99999764421
Q ss_pred --hhhhhhc--CCcEEEEEEeCCCh-hhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCC
Q psy15036 100 --LTTGLYR--GTMGFLLIFDVTNE-NSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQR 160 (179)
Q Consensus 100 --~~~~~~~--~~~~vilvyDit~~-~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~ 160 (179)
....|.. ..+++++|..++.. .++.. ...++.+.+..+..+. ..+++|-||+|...
T Consensus 103 ~~~I~~~l~~~~idvIL~V~rlD~~r~~~~d-~~llk~I~e~fG~~i~----~~~ivV~T~~d~~~ 163 (249)
T cd01853 103 LSSIKRYLKKKTPDVVLYVDRLDMYRRDYLD-LPLLRAITDSFGPSIW----RNAIVVLTHAASSP 163 (249)
T ss_pred HHHHHHHHhccCCCEEEEEEcCCCCCCCHHH-HHHHHHHHHHhChhhH----hCEEEEEeCCccCC
Confidence 1122333 57788877666543 22221 2444445544333211 24677889999843
No 263
>COG1160 Predicted GTPases [General function prediction only]
Probab=97.09 E-value=0.0058 Score=52.26 Aligned_cols=121 Identities=15% Similarity=0.043 Sum_probs=74.1
Q ss_pred eeeEEE-EeCCCCc---eeEeeeccCC----CcccCcceeeeeEEEEEecCCCee--eeCCCc----------hhchhhh
Q psy15036 42 FNFGTQ-LGRRGIP---LLKHLKYLGT----GTHGKTVGIVFPAISVTYSIGPRY--FRFPLV----------SRFLSLT 101 (179)
Q Consensus 42 ~~~Kiv-lG~~gvG---~~~~~~~~~~----~~~~~Ti~~~~~~k~v~~~~~~~i--wDt~G~----------e~~~~~~ 101 (179)
..+||. ||-++|| +++.+.+... +....|. +.-...+..+ ++.+ .||+|- |.|...+
T Consensus 177 ~~ikiaiiGrPNvGKSsLiN~ilgeeR~Iv~~~aGTTR--D~I~~~~e~~-~~~~~liDTAGiRrk~ki~e~~E~~Sv~r 253 (444)
T COG1160 177 DPIKIAIIGRPNVGKSSLINAILGEERVIVSDIAGTTR--DSIDIEFERD-GRKYVLIDTAGIRRKGKITESVEKYSVAR 253 (444)
T ss_pred CceEEEEEeCCCCCchHHHHHhccCceEEecCCCCccc--cceeeeEEEC-CeEEEEEECCCCCcccccccceEEEeehh
Confidence 469996 9999999 5555543221 1122232 2334566777 8877 999985 3343322
Q ss_pred -hhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCCCCCCCHHHHHHHHhh
Q psy15036 102 -TGLYRGTMGFLLIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQRCREVVTPDQIMFGST 175 (179)
Q Consensus 102 -~~~~~~~~~vilvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~~r~Vs~~e~~~~a~~ 175 (179)
..-...++.++||.|.+..-+-+..+ ....+.+. + -++++|-||-|+.++++.+.++.++-...
T Consensus 254 t~~aI~~a~vvllviDa~~~~~~qD~~-ia~~i~~~-g--------~~~vIvvNKWDl~~~~~~~~~~~k~~i~~ 318 (444)
T COG1160 254 TLKAIERADVVLLVIDATEGISEQDLR-IAGLIEEA-G--------RGIVIVVNKWDLVEEDEATMEEFKKKLRR 318 (444)
T ss_pred hHhHHhhcCEEEEEEECCCCchHHHHH-HHHHHHHc-C--------CCeEEEEEccccCCchhhHHHHHHHHHHH
Confidence 23466899999999999875544422 22222222 1 24566789999987666777776654443
No 264
>KOG1191|consensus
Probab=97.06 E-value=0.00086 Score=57.71 Aligned_cols=119 Identities=16% Similarity=0.055 Sum_probs=69.6
Q ss_pred CceeeEEE-EeCCCCc---eeEeeeccCC----CcccCcceeeeeEEEEEecCCCee--eeCCCchh-ch------h--h
Q psy15036 40 FSFNFGTQ-LGRRGIP---LLKHLKYLGT----GTHGKTVGIVFPAISVTYSIGPRY--FRFPLVSR-FL------S--L 100 (179)
Q Consensus 40 ~~~~~Kiv-lG~~gvG---~~~~~~~~~~----~~~~~Ti~~~~~~k~v~~~~~~~i--wDt~G~e~-~~------~--~ 100 (179)
...-++|+ +|.++|| +++.+..... +....|- |.....++++ |.++ .||+|--+ -. . -
T Consensus 265 lq~gl~iaIvGrPNvGKSSLlNaL~~~drsIVSpv~GTTR--Daiea~v~~~-G~~v~L~DTAGiRe~~~~~iE~~gI~r 341 (531)
T KOG1191|consen 265 LQSGLQIAIVGRPNVGKSSLLNALSREDRSIVSPVPGTTR--DAIEAQVTVN-GVPVRLSDTAGIREESNDGIEALGIER 341 (531)
T ss_pred hhcCCeEEEEcCCCCCHHHHHHHHhcCCceEeCCCCCcch--hhheeEeecC-CeEEEEEeccccccccCChhHHHhHHH
Confidence 33457887 9999999 5444442222 2222222 3334567788 9998 99999644 11 1 2
Q ss_pred hhhhhcCCcEEEEEEeC--CChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCCC
Q psy15036 101 TTGLYRGTMGFLLIFDV--TNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQRC 161 (179)
Q Consensus 101 ~~~~~~~~~~vilvyDi--t~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~~ 161 (179)
...-.+.+|.+++|+|. +.-++-..+...++....-.....++.+..+++++.||+|+...
T Consensus 342 A~k~~~~advi~~vvda~~~~t~sd~~i~~~l~~~~~g~~~~~~~~~~~~~i~~~nk~D~~s~ 404 (531)
T KOG1191|consen 342 ARKRIERADVILLVVDAEESDTESDLKIARILETEGVGLVVIVNKMEKQRIILVANKSDLVSK 404 (531)
T ss_pred HHHHHhhcCEEEEEecccccccccchHHHHHHHHhccceEEEeccccccceEEEechhhccCc
Confidence 23346789999999998 44444444444444433211111122233688899999999764
No 265
>PRK00007 elongation factor G; Reviewed
Probab=97.03 E-value=0.0066 Score=55.25 Aligned_cols=72 Identities=13% Similarity=-0.015 Sum_probs=48.3
Q ss_pred EEEEecCCCee--eeCCCchhchhhhhhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeC
Q psy15036 78 ISVTYSIGPRY--FRFPLVSRFLSLTTGLYRGTMGFLLIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCL 155 (179)
Q Consensus 78 k~v~~~~~~~i--wDt~G~e~~~~~~~~~~~~~~~vilvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK 155 (179)
..+... +..+ .||+|+..|..-...-++.+|++++|.|...--.-+....|. .+.+. . .|++++.||
T Consensus 68 ~~~~~~-~~~~~liDTPG~~~f~~ev~~al~~~D~~vlVvda~~g~~~qt~~~~~-~~~~~---~------~p~iv~vNK 136 (693)
T PRK00007 68 TTCFWK-DHRINIIDTPGHVDFTIEVERSLRVLDGAVAVFDAVGGVEPQSETVWR-QADKY---K------VPRIAFVNK 136 (693)
T ss_pred EEEEEC-CeEEEEEeCCCcHHHHHHHHHHHHHcCEEEEEEECCCCcchhhHHHHH-HHHHc---C------CCEEEEEEC
Confidence 445556 6666 899999988665666788999999999977543333323332 23322 1 355688999
Q ss_pred CCcCC
Q psy15036 156 ELLQR 160 (179)
Q Consensus 156 ~Dl~~ 160 (179)
.|+.+
T Consensus 137 ~D~~~ 141 (693)
T PRK00007 137 MDRTG 141 (693)
T ss_pred CCCCC
Confidence 99875
No 266
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=97.00 E-value=0.0014 Score=47.39 Aligned_cols=48 Identities=17% Similarity=0.159 Sum_probs=34.4
Q ss_pred hhhcCCcEEEEEEeCCChhhHH--HHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCC
Q psy15036 103 GLYRGTMGFLLIFDVTNENSFK--DVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQR 160 (179)
Q Consensus 103 ~~~~~~~~vilvyDit~~~Sf~--~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~ 160 (179)
.....+|++++|+|..++.+.. .+..|+... ... .|+++|.||+|+..
T Consensus 7 ~~i~~aD~vl~ViD~~~p~~~~~~~l~~~l~~~---~~~-------k~~iivlNK~DL~~ 56 (141)
T cd01857 7 RVVERSDIVVQIVDARNPLLFRPPDLERYVKEV---DPR-------KKNILLLNKADLLT 56 (141)
T ss_pred HHHhhCCEEEEEEEccCCcccCCHHHHHHHHhc---cCC-------CcEEEEEechhcCC
Confidence 4578899999999999887655 444555432 122 37788899999954
No 267
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1). This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).
Probab=96.99 E-value=0.006 Score=46.48 Aligned_cols=105 Identities=12% Similarity=-0.001 Sum_probs=54.9
Q ss_pred EEE-EeCCCCc---eeEeeecc--CCCc---ccCcceeeeeEEEEEecCCCee--eeCCCchhch--------hhhh---
Q psy15036 45 GTQ-LGRRGIP---LLKHLKYL--GTGT---HGKTVGIVFPAISVTYSIGPRY--FRFPLVSRFL--------SLTT--- 102 (179)
Q Consensus 45 Kiv-lG~~gvG---~~~~~~~~--~~~~---~~~Ti~~~~~~k~v~~~~~~~i--wDt~G~e~~~--------~~~~--- 102 (179)
+|+ +|..|+| ++..+.+. +... ...|..+. .....++ +..+ .||+|-.... .+..
T Consensus 2 ~i~lvG~~g~GKSsl~N~ilg~~~~~~~~~~~~~T~~~~--~~~~~~~-~~~i~viDTPG~~d~~~~~~~~~~~i~~~~~ 78 (196)
T cd01852 2 RLVLVGKTGAGKSATGNTILGREVFESKLSASSVTKTCQ--KESAVWD-GRRVNVIDTPGLFDTSVSPEQLSKEIVRCLS 78 (196)
T ss_pred EEEEECCCCCCHHHHHHHhhCCCccccccCCCCcccccc--eeeEEEC-CeEEEEEECcCCCCccCChHHHHHHHHHHHH
Confidence 576 9999999 44444422 2111 12343322 2334456 7776 9999964331 1111
Q ss_pred hhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCc
Q psy15036 103 GLYRGTMGFLLIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELL 158 (179)
Q Consensus 103 ~~~~~~~~vilvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl 158 (179)
....+.|++++|.|+.+ -+-+ -..-++.+++..+.... .++++|-++.|.
T Consensus 79 ~~~~g~~~illVi~~~~-~t~~-d~~~l~~l~~~fg~~~~----~~~ivv~T~~d~ 128 (196)
T cd01852 79 LSAPGPHAFLLVVPLGR-FTEE-EEQAVETLQELFGEKVL----DHTIVLFTRGDD 128 (196)
T ss_pred hcCCCCEEEEEEEECCC-cCHH-HHHHHHHHHHHhChHhH----hcEEEEEECccc
Confidence 12457899999999876 2211 12334444444333210 234455666664
No 268
>PRK13768 GTPase; Provisional
Probab=96.96 E-value=0.0013 Score=52.45 Aligned_cols=66 Identities=9% Similarity=-0.141 Sum_probs=41.5
Q ss_pred eeCCCchhc---hhhhhhhhcC-----CcEEEEEEeCCChhhHHHH--HHHHHHHHHHhCCccCccccceEEEEeeCCCc
Q psy15036 89 FRFPLVSRF---LSLTTGLYRG-----TMGFLLIFDVTNENSFKDV--EKWLLQIKVMDGALFTHFELQIVFMRGCLELL 158 (179)
Q Consensus 89 wDt~G~e~~---~~~~~~~~~~-----~~~vilvyDit~~~Sf~~l--~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl 158 (179)
||++|+.++ +...+.+++. ++++++++|.+...+.... ..|+......... .|+++|.||+|+
T Consensus 102 ~d~~g~~~~~~~~~~~~~~~~~l~~~~~~~ii~liD~~~~~~~~d~~~~~~l~~~~~~~~~-------~~~i~v~nK~D~ 174 (253)
T PRK13768 102 VDTPGQMELFAFRESGRKLVERLSGSSKSVVVFLIDAVLAKTPSDFVSLLLLALSVQLRLG-------LPQIPVLNKADL 174 (253)
T ss_pred EeCCcHHHHHhhhHHHHHHHHHHHhcCCeEEEEEechHHhCCHHHHHHHHHHHHHHHHHcC-------CCEEEEEEhHhh
Confidence 999998774 3344344443 8899999999665433332 2344433333223 477888999998
Q ss_pred CCC
Q psy15036 159 QRC 161 (179)
Q Consensus 159 ~~~ 161 (179)
..+
T Consensus 175 ~~~ 177 (253)
T PRK13768 175 LSE 177 (253)
T ss_pred cCc
Confidence 653
No 269
>COG1084 Predicted GTPase [General function prediction only]
Probab=96.92 E-value=0.0074 Score=49.75 Aligned_cols=113 Identities=15% Similarity=0.018 Sum_probs=65.7
Q ss_pred eeEEE-EeCCCCc---eeEeeeccCC--CcccCc-ceeeeeEEEEEecCCCee--eeCCCc------hhch---hhhhhh
Q psy15036 43 NFGTQ-LGRRGIP---LLKHLKYLGT--GTHGKT-VGIVFPAISVTYSIGPRY--FRFPLV------SRFL---SLTTGL 104 (179)
Q Consensus 43 ~~Kiv-lG~~gvG---~~~~~~~~~~--~~~~~T-i~~~~~~k~v~~~~~~~i--wDt~G~------e~~~---~~~~~~ 104 (179)
+.-|| -|-++|| +++.+....+ ..|..| -++.. -.+..+ ..++ .||+|- |+.. ......
T Consensus 168 ~pTivVaG~PNVGKSSlv~~lT~AkpEvA~YPFTTK~i~v--Ghfe~~-~~R~QvIDTPGlLDRPl~ErN~IE~qAi~AL 244 (346)
T COG1084 168 LPTIVVAGYPNVGKSSLVRKLTTAKPEVAPYPFTTKGIHV--GHFERG-YLRIQVIDTPGLLDRPLEERNEIERQAILAL 244 (346)
T ss_pred CCeEEEecCCCCcHHHHHHHHhcCCCccCCCCccccceeE--eeeecC-CceEEEecCCcccCCChHHhcHHHHHHHHHH
Confidence 45566 9999999 6666664322 234333 33222 233344 5555 899994 1111 111112
Q ss_pred hcCCcEEEEEEeCCChh--hHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCCCCCCCH
Q psy15036 105 YRGTMGFLLIFDVTNEN--SFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQRCREVVT 166 (179)
Q Consensus 105 ~~~~~~vilvyDit~~~--Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~~r~Vs~ 166 (179)
-+=+++++++||.+... |.+.-...+++++.... .|+++|.||.|+.+...+..
T Consensus 245 ~hl~~~IlF~~D~Se~cgy~lE~Q~~L~~eIk~~f~--------~p~v~V~nK~D~~~~e~~~~ 300 (346)
T COG1084 245 RHLAGVILFLFDPSETCGYSLEEQISLLEEIKELFK--------APIVVVINKIDIADEEKLEE 300 (346)
T ss_pred HHhcCeEEEEEcCccccCCCHHHHHHHHHHHHHhcC--------CCeEEEEecccccchhHHHH
Confidence 22357788899987653 34554567777776654 37888999999875444433
No 270
>KOG4273|consensus
Probab=96.88 E-value=0.0024 Score=50.93 Aligned_cols=62 Identities=13% Similarity=0.277 Sum_probs=41.9
Q ss_pred cCCcEEEEEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCCCCCCCHHHHHHHHhh
Q psy15036 106 RGTMGFLLIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQRCREVVTPDQIMFGST 175 (179)
Q Consensus 106 ~~~~~vilvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~~r~Vs~~e~~~~a~~ 175 (179)
....++++|||++.+..+..++.|+....-.. + -+.+.+|||.|.....--..+..+.+|+-
T Consensus 77 ~pl~a~vmvfdlse~s~l~alqdwl~htdins------f--dillcignkvdrvphhlahdeyrrrl~ka 138 (418)
T KOG4273|consen 77 EPLQAFVMVFDLSEKSGLDALQDWLPHTDINS------F--DILLCIGNKVDRVPHHLAHDEYRRRLAKA 138 (418)
T ss_pred cceeeEEEEEeccchhhhHHHHhhcccccccc------c--hhheecccccccccchhhhhHHHHHHHhh
Confidence 34578899999999999999999987543322 2 24456799999755333334444555543
No 271
>PTZ00141 elongation factor 1- alpha; Provisional
Probab=96.84 E-value=0.01 Score=51.28 Aligned_cols=72 Identities=7% Similarity=-0.088 Sum_probs=45.9
Q ss_pred EEEEecCCCee--eeCCCchhchhhhhhhhcCCcEEEEEEeCCChh---hH---HHHHHHHHHHHHHhCCccCccccceE
Q psy15036 78 ISVTYSIGPRY--FRFPLVSRFLSLTTGLYRGTMGFLLIFDVTNEN---SF---KDVEKWLLQIKVMDGALFTHFELQIV 149 (179)
Q Consensus 78 k~v~~~~~~~i--wDt~G~e~~~~~~~~~~~~~~~vilvyDit~~~---Sf---~~l~~w~~~i~~~~~~~~~~~~~~~i 149 (179)
..+..+ +..+ .|++|+++|......-...+|++++|.|.+.-. .| .....-+..+.... - +.+
T Consensus 78 ~~~~~~-~~~i~lIDtPGh~~f~~~~~~g~~~aD~ailVVda~~G~~e~~~~~~~qT~eh~~~~~~~g-i-------~~i 148 (446)
T PTZ00141 78 WKFETP-KYYFTIIDAPGHRDFIKNMITGTSQADVAILVVASTAGEFEAGISKDGQTREHALLAFTLG-V-------KQM 148 (446)
T ss_pred EEEccC-CeEEEEEECCChHHHHHHHHHhhhhcCEEEEEEEcCCCceecccCCCccHHHHHHHHHHcC-C-------CeE
Confidence 344555 5565 999999999776666688999999999987531 11 12222222222222 1 456
Q ss_pred EEEeeCCCc
Q psy15036 150 FMRGCLELL 158 (179)
Q Consensus 150 ilvGnK~Dl 158 (179)
|++-||.|+
T Consensus 149 iv~vNKmD~ 157 (446)
T PTZ00141 149 IVCINKMDD 157 (446)
T ss_pred EEEEEcccc
Confidence 788899995
No 272
>KOG0705|consensus
Probab=96.83 E-value=0.0035 Score=54.87 Aligned_cols=119 Identities=13% Similarity=0.098 Sum_probs=80.3
Q ss_pred eeEE-EEeCCCCc---ee-EeeeccCCCcccCcceeeeeEEEEEecCCCee----eeCCCchhchhhhhhhhcCCcEEEE
Q psy15036 43 NFGT-QLGRRGIP---LL-KHLKYLGTGTHGKTVGIVFPAISVTYSIGPRY----FRFPLVSRFLSLTTGLYRGTMGFLL 113 (179)
Q Consensus 43 ~~Ki-vlG~~gvG---~~-~~~~~~~~~~~~~Ti~~~~~~k~v~~~~~~~i----wDt~G~e~~~~~~~~~~~~~~~vil 113 (179)
.+|+ |+|+.+.| ++ +++.+.+..... +.|..|. +.+.++ +... .|-+|. ....|....|++|+
T Consensus 30 elk~givg~~~sgktalvhr~ltgty~~~e~-~e~~~~k-kE~vv~-gqs~lLlirdeg~~-----~~aQft~wvdavIf 101 (749)
T KOG0705|consen 30 ELKLGIVGTSQSGKTALVHRYLTGTYTQDES-PEGGRFK-KEVVVD-GQSHLLLIRDEGGH-----PDAQFCQWVDAVVF 101 (749)
T ss_pred hhheeeeecccCCceeeeeeeccceeccccC-CcCccce-eeEEee-ccceEeeeecccCC-----chhhhhhhccceEE
Confidence 5788 69999999 44 445566555443 4444565 555555 5554 776663 34678889999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCC--CCCCCHHHHHHHHh
Q psy15036 114 IFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQR--CREVVTPDQIMFGS 174 (179)
Q Consensus 114 vyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~--~r~Vs~~e~~~~a~ 174 (179)
||.+.+.+||+.++...-.+..+.... -+|++++|++.-... .|.+...++..++.
T Consensus 102 vf~~~d~~s~q~v~~l~~~l~~~r~r~-----~i~l~lvgtqd~iS~~~~rv~~da~~r~l~~ 159 (749)
T KOG0705|consen 102 VFSVEDEQSFQAVQALAHEMSSYRNIS-----DLPLILVGTQDHISAKRPRVITDDRARQLSA 159 (749)
T ss_pred EEEeccccCHHHHHHHHhhcccccccc-----cchHHhhcCcchhhcccccccchHHHHHHHH
Confidence 999999999999988877775443321 268889998765433 34555566655543
No 273
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=96.70 E-value=0.0018 Score=47.39 Aligned_cols=53 Identities=9% Similarity=-0.038 Sum_probs=35.0
Q ss_pred hhhhhhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCC
Q psy15036 98 LSLTTGLYRGTMGFLLIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQR 160 (179)
Q Consensus 98 ~~~~~~~~~~~~~vilvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~ 160 (179)
+.+.+...+++|++++|+|.+++.+.... .+...+. ... .|+++|.||+|+..
T Consensus 3 ~~~~~~i~~~aD~vl~V~D~~~~~~~~~~-~l~~~~~---~~~------~p~iiv~NK~Dl~~ 55 (156)
T cd01859 3 KRLVRRIIKESDVVLEVLDARDPELTRSR-KLERYVL---ELG------KKLLIVLNKADLVP 55 (156)
T ss_pred HHHHHHHHhhCCEEEEEeeCCCCcccCCH-HHHHHHH---hCC------CcEEEEEEhHHhCC
Confidence 45677888999999999999876543321 2222221 112 47788899999853
No 274
>COG1159 Era GTPase [General function prediction only]
Probab=96.63 E-value=0.018 Score=46.90 Aligned_cols=102 Identities=14% Similarity=0.072 Sum_probs=59.9
Q ss_pred EEeCCCCc---eeEeeeccC----CCcccCcceeeeeEEEEEecCCCee--eeCCCchhc--------hhhhhhhhcCCc
Q psy15036 47 QLGRRGIP---LLKHLKYLG----TGTHGKTVGIVFPAISVTYSIGPRY--FRFPLVSRF--------LSLTTGLYRGTM 109 (179)
Q Consensus 47 vlG~~gvG---~~~~~~~~~----~~~~~~Ti~~~~~~k~v~~~~~~~i--wDt~G~e~~--------~~~~~~~~~~~~ 109 (179)
++|.++|| ++..+.+.- +...+.|-. .. .-.++.+ +.++ .||+|-.+- ......-+.++|
T Consensus 11 IiGrPNvGKSTLlN~l~G~KisIvS~k~QTTR~-~I-~GI~t~~-~~QiIfvDTPGih~pk~~l~~~m~~~a~~sl~dvD 87 (298)
T COG1159 11 IIGRPNVGKSTLLNALVGQKISIVSPKPQTTRN-RI-RGIVTTD-NAQIIFVDTPGIHKPKHALGELMNKAARSALKDVD 87 (298)
T ss_pred EEcCCCCcHHHHHHHHhcCceEeecCCcchhhh-he-eEEEEcC-CceEEEEeCCCCCCcchHHHHHHHHHHHHHhccCc
Confidence 39999999 665555332 222233322 11 2334455 5565 899995332 233445578999
Q ss_pred EEEEEEeCCChhhHHHHHHHH-HHHHHHhCCccCccccceEEEEeeCCCcCCCC
Q psy15036 110 GFLLIFDVTNENSFKDVEKWL-LQIKVMDGALFTHFELQIVFMRGCLELLQRCR 162 (179)
Q Consensus 110 ~vilvyDit~~~Sf~~l~~w~-~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~~r 162 (179)
++++|.|.+.. +..-..|+ +.+++ .+ .|++++.||.|.....
T Consensus 88 lilfvvd~~~~--~~~~d~~il~~lk~---~~------~pvil~iNKID~~~~~ 130 (298)
T COG1159 88 LILFVVDADEG--WGPGDEFILEQLKK---TK------TPVILVVNKIDKVKPK 130 (298)
T ss_pred EEEEEEecccc--CCccHHHHHHHHhh---cC------CCeEEEEEccccCCcH
Confidence 99999998863 22222333 33333 22 4788999999986533
No 275
>PRK09866 hypothetical protein; Provisional
Probab=96.61 E-value=0.019 Score=51.59 Aligned_cols=77 Identities=12% Similarity=-0.034 Sum_probs=47.5
Q ss_pred eeCCCchhc-----hhhhhhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCCCCC
Q psy15036 89 FRFPLVSRF-----LSLTTGLYRGTMGFLLIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQRCRE 163 (179)
Q Consensus 89 wDt~G~e~~-----~~~~~~~~~~~~~vilvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~~r~ 163 (179)
.||+|-..- .......++++|++++|.|.++.-+... ....+.+++.... .|+++|.||+|+.+...
T Consensus 235 VDTPGIhk~~~~~L~k~M~eqL~eADvVLFVVDat~~~s~~D-eeIlk~Lkk~~K~-------~PVILVVNKIDl~dree 306 (741)
T PRK09866 235 LDTPGPNEAGQPHLQKMLNQQLARASAVLAVLDYTQLKSISD-EEVREAILAVGQS-------VPLYVLVNKFDQQDRNS 306 (741)
T ss_pred EECCCCCCccchHHHHHHHHHHhhCCEEEEEEeCCCCCChhH-HHHHHHHHhcCCC-------CCEEEEEEcccCCCccc
Confidence 899997542 2223346889999999999987544443 2233334433221 37888999999854333
Q ss_pred CCHHHHHHHH
Q psy15036 164 VVTPDQIMFG 173 (179)
Q Consensus 164 Vs~~e~~~~a 173 (179)
-..++.+++.
T Consensus 307 ddkE~Lle~V 316 (741)
T PRK09866 307 DDADQVRALI 316 (741)
T ss_pred chHHHHHHHH
Confidence 3345555553
No 276
>PRK09602 translation-associated GTPase; Reviewed
Probab=96.58 E-value=0.0069 Score=51.57 Aligned_cols=30 Identities=10% Similarity=0.117 Sum_probs=24.8
Q ss_pred eeCCCc----hhchhhhhhh---hcCCcEEEEEEeCC
Q psy15036 89 FRFPLV----SRFLSLTTGL---YRGTMGFLLIFDVT 118 (179)
Q Consensus 89 wDt~G~----e~~~~~~~~~---~~~~~~vilvyDit 118 (179)
||++|. .+...+...| ++++|++++|+|..
T Consensus 77 ~D~aGl~~ga~~g~glg~~fL~~ir~ad~ll~Vvd~~ 113 (396)
T PRK09602 77 IDVAGLVPGAHEGRGLGNQFLDDLRQADALIHVVDAS 113 (396)
T ss_pred EEcCCcCCCccchhhHHHHHHHHHHHCCEEEEEEeCC
Confidence 999994 4555666677 88999999999997
No 277
>COG0218 Predicted GTPase [General function prediction only]
Probab=96.29 E-value=0.022 Score=43.81 Aligned_cols=107 Identities=13% Similarity=0.025 Sum_probs=59.5
Q ss_pred eeEEE-EeCCCCc---eeEeeeccC-CCcccCcceeeeeEEEEEecCCCee-eeCCC----------chhchhhhhhhhc
Q psy15036 43 NFGTQ-LGRRGIP---LLKHLKYLG-TGTHGKTVGIVFPAISVTYSIGPRY-FRFPL----------VSRFLSLTTGLYR 106 (179)
Q Consensus 43 ~~Kiv-lG~~gvG---~~~~~~~~~-~~~~~~Ti~~~~~~k~v~~~~~~~i-wDt~G----------~e~~~~~~~~~~~ 106 (179)
..-|+ +|-++|| +++.+++.- .-....|-|.+-..-.+.++ +... .|.+| ++++..+...|++
T Consensus 24 ~~EIaF~GRSNVGKSSlIN~l~~~k~LArtSktPGrTq~iNff~~~-~~~~lVDlPGYGyAkv~k~~~e~w~~~i~~YL~ 102 (200)
T COG0218 24 LPEIAFAGRSNVGKSSLINALTNQKNLARTSKTPGRTQLINFFEVD-DELRLVDLPGYGYAKVPKEVKEKWKKLIEEYLE 102 (200)
T ss_pred CcEEEEEccCcccHHHHHHHHhCCcceeecCCCCCccceeEEEEec-CcEEEEeCCCcccccCCHHHHHHHHHHHHHHHh
Confidence 45677 9999999 444444321 12223333332222234555 5443 78887 3566667777776
Q ss_pred C---CcEEEEEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCC
Q psy15036 107 G---TMGFLLIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQR 160 (179)
Q Consensus 107 ~---~~~vilvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~ 160 (179)
. -.+++++.|....-.-... ..++-+... . .|+++|.||+|--.
T Consensus 103 ~R~~L~~vvlliD~r~~~~~~D~-em~~~l~~~---~------i~~~vv~tK~DKi~ 149 (200)
T COG0218 103 KRANLKGVVLLIDARHPPKDLDR-EMIEFLLEL---G------IPVIVVLTKADKLK 149 (200)
T ss_pred hchhheEEEEEEECCCCCcHHHH-HHHHHHHHc---C------CCeEEEEEccccCC
Confidence 4 4667777787654332221 222222222 2 57788899999644
No 278
>KOG1423|consensus
Probab=96.23 E-value=0.02 Score=46.99 Aligned_cols=121 Identities=7% Similarity=-0.064 Sum_probs=63.5
Q ss_pred cccccccccc-ccCceeeEEE-EeCCCCc---eeEeeeccC----CCcccCcceeeeeEEEEEecCCCee--eeCCCchh
Q psy15036 28 CTKVTKMTAA-KEFSFNFGTQ-LGRRGIP---LLKHLKYLG----TGTHGKTVGIVFPAISVTYSIGPRY--FRFPLVSR 96 (179)
Q Consensus 28 ~~~~~~m~~~-~~~~~~~Kiv-lG~~gvG---~~~~~~~~~----~~~~~~Ti~~~~~~k~v~~~~~~~i--wDt~G~e~ 96 (179)
|-....|+.+ ++-.+.+.|. ||.++|| +.+.+.+.. ..+...|-- +. .-.++-+ ..++ +||+|--.
T Consensus 56 ~~pa~~esrde~e~~k~L~vavIG~PNvGKStLtN~mig~kv~~vS~K~~TTr~-~i-lgi~ts~-eTQlvf~DTPGlvs 132 (379)
T KOG1423|consen 56 LYPAALESRDEEEAQKSLYVAVIGAPNVGKSTLTNQMIGQKVSAVSRKVHTTRH-RI-LGIITSG-ETQLVFYDTPGLVS 132 (379)
T ss_pred CccccccCCCchhcceEEEEEEEcCCCcchhhhhhHhhCCccccccccccceee-ee-eEEEecC-ceEEEEecCCcccc
Confidence 3333444444 3344667775 9999999 444444321 112222211 11 1233334 4444 99999532
Q ss_pred chh------------hhhhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCC
Q psy15036 97 FLS------------LTTGLYRGTMGFLLIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQR 160 (179)
Q Consensus 97 ~~~------------~~~~~~~~~~~vilvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~ 160 (179)
-.. --..-..+||++++|+|.++....-+ .+-+..+.++.. .|-|||-||.|...
T Consensus 133 ~~~~r~~~l~~s~lq~~~~a~q~AD~vvVv~Das~tr~~l~-p~vl~~l~~ys~--------ips~lvmnkid~~k 199 (379)
T KOG1423|consen 133 KKMHRRHHLMMSVLQNPRDAAQNADCVVVVVDASATRTPLH-PRVLHMLEEYSK--------IPSILVMNKIDKLK 199 (379)
T ss_pred cchhhhHHHHHHhhhCHHHHHhhCCEEEEEEeccCCcCccC-hHHHHHHHHHhc--------CCceeeccchhcch
Confidence 111 11123457999999999997322221 233444444432 36678889999754
No 279
>PF00503 G-alpha: G-protein alpha subunit; InterPro: IPR001019 Guanine nucleotide binding proteins (G proteins) are membrane-associated, heterotrimeric proteins composed of three subunits: alpha (IPR001019 from INTERPRO), beta (IPR001632 from INTERPRO) and gamma (IPR001770 from INTERPRO) []. G proteins and their receptors (GPCRs) form one of the most prevalent signalling systems in mammalian cells, regulating systems as diverse as sensory perception, cell growth and hormonal regulation []. At the cell surface, the binding of ligands such as hormones and neurotransmitters to a GPCR activates the receptor by causing a conformational change, which in turn activates the bound G protein on the intracellular-side of the membrane. The activated receptor promotes the exchange of bound GDP for GTP on the G protein alpha subunit. GTP binding changes the conformation of switch regions within the alpha subunit, which allows the bound trimeric G protein (inactive) to be released from the receptor, and to dissociate into active alpha subunit (GTP-bound) and beta/gamma dimer. The alpha subunit and the beta/gamma dimer go on to activate distinct downstream effectors, such as adenylyl cyclase, phosphodiesterases, phospholipase C, and ion channels. These effectors in turn regulate the intracellular concentrations of secondary messengers, such as cAMP, diacylglycerol, sodium or calcium cations, which ultimately lead to a physiological response, usually via the downstream regulation of gene transcription. The cycle is completed by the hydrolysis of alpha subunit-bound GTP to GDP, resulting in the re-association of the alpha and beta/gamma subunits and their binding to the receptor, which terminates the signal []. The length of the G protein signal is controlled by the duration of the GTP-bound alpha subunit, which can be regulated by RGS (regulator of G protein signalling) proteins (IPR000342 from INTERPRO) or by covalent modifications []. There are several isoforms of each subunit, many of which have splice variants, which together can make up hundreds of combinations of G proteins. The specific combination of subunits in heterotrimeric G proteins affects not only which receptor it can bind to, but also which downstream target is affected, providing the means to target specific physiological processes in response to specific external stimuli [, ]. G proteins carry lipid modifications on one or more of their subunits to target them to the plasma membrane and to contribute to protein interactions. This family consists of the G protein alpha subunit, which acts as a weak GTPase. G protein classes are defined based on the sequence and function of their alpha subunits, which in mammals fall into four main categories: G(S)alpha, G(Q)alpha, G(I)alpha and G(12)alpha; there are also fungal and plant classes of alpha subunits. The alpha subunit consists of two domains: a GTP-binding domain and a helical insertion domain (IPR011025 from INTERPRO). The GTP-binding domain is homologous to Ras-like small GTPases, and includes switch regions I and II, which change conformation during activation. The switch regions are loops of alpha-helices with conformations sensitive to guanine nucleotides. The helical insertion domain is inserted into the GTP-binding domain before switch region I and is unique to heterotrimeric G proteins. This helical insertion domain functions to sequester the guanine nucleotide at the interface with the GTP-binding domain and must be displaced to enable nucleotide dissociation.; GO: 0004871 signal transducer activity, 0019001 guanyl nucleotide binding, 0007186 G-protein coupled receptor protein signaling pathway; PDB: 3QI2_B 3QE0_A 2IK8_A 2OM2_A 2GTP_B 2XNS_B 3ONW_B 1KJY_A 2EBC_A 1Y3A_B ....
Probab=96.10 E-value=0.018 Score=48.68 Aligned_cols=85 Identities=8% Similarity=0.060 Sum_probs=53.2
Q ss_pred cceeeeeEEEEEe-cCCCee--eeCCCchhchhhhhhhhcCCcEEEEEEeCCChhh-------HHHHHHHHHHHHHHhCC
Q psy15036 70 TVGIVFPAISVTY-SIGPRY--FRFPLVSRFLSLTTGLYRGTMGFLLIFDVTNENS-------FKDVEKWLLQIKVMDGA 139 (179)
Q Consensus 70 Ti~~~~~~k~v~~-~~~~~i--wDt~G~e~~~~~~~~~~~~~~~vilvyDit~~~S-------f~~l~~w~~~i~~~~~~ 139 (179)
|.|+. ...+.+ + +..+ +|.+||..-+.-|..+|.+++++|+|.++++-+- -+.+..=+..+......
T Consensus 222 T~Gi~--e~~f~~~~-~~~~~~~DvGGqr~eRkKW~~~F~~v~~vif~vsls~ydq~~~ed~~~nrl~esl~lF~~i~~~ 298 (389)
T PF00503_consen 222 TTGIT--EIDFNFSG-SRKFRLIDVGGQRSERKKWIHCFEDVTAVIFVVSLSEYDQTLYEDPNTNRLHESLNLFESICNN 298 (389)
T ss_dssp -SSEE--EEEEEE-T-TEEEEEEEETSSGGGGGGGGGGGTTESEEEEEEEGGGGGSBESSSTTSBHHHHHHHHHHHHHTS
T ss_pred CCCee--EEEEEeec-ccccceecCCCCchhhhhHHHHhccccEEEEeecccchhhhhcccchHHHHHHHHHHHHHHHhC
Confidence 55543 335566 5 6666 9999998888888999999999999998764322 12233323333333222
Q ss_pred ccCccccceEEEEeeCCCcC
Q psy15036 140 LFTHFELQIVFMRGCLELLQ 159 (179)
Q Consensus 140 ~~~~~~~~~iilvGnK~Dl~ 159 (179)
. -+...++||+-||.|+-
T Consensus 299 ~--~~~~~~iil~lnK~D~f 316 (389)
T PF00503_consen 299 P--WFKNTPIILFLNKIDLF 316 (389)
T ss_dssp G--GGTTSEEEEEEE-HHHH
T ss_pred c--ccccCceEEeeecHHHH
Confidence 1 11226888889999973
No 280
>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=96.09 E-value=0.042 Score=47.92 Aligned_cols=59 Identities=8% Similarity=-0.040 Sum_probs=47.5
Q ss_pred eeCCCchhchhhhhhhhcCCcEEEEEEeCCC---hhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCC
Q psy15036 89 FRFPLVSRFLSLTTGLYRGTMGFLLIFDVTN---ENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQR 160 (179)
Q Consensus 89 wDt~G~e~~~~~~~~~~~~~~~vilvyDit~---~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~ 160 (179)
.||+|++-|..|+..=..=+|++|||.+.++ +++.+.++. ....+ .|+++..||+|..+
T Consensus 60 iDTPGHeAFt~mRaRGa~vtDIaILVVa~dDGv~pQTiEAI~h-------ak~a~------vP~iVAiNKiDk~~ 121 (509)
T COG0532 60 IDTPGHEAFTAMRARGASVTDIAILVVAADDGVMPQTIEAINH-------AKAAG------VPIVVAINKIDKPE 121 (509)
T ss_pred EcCCcHHHHHHHHhcCCccccEEEEEEEccCCcchhHHHHHHH-------HHHCC------CCEEEEEecccCCC
Confidence 8999999999999877888999999999887 566666543 22233 68889999999863
No 281
>PRK13796 GTPase YqeH; Provisional
Probab=96.08 E-value=0.017 Score=48.57 Aligned_cols=63 Identities=19% Similarity=0.260 Sum_probs=40.6
Q ss_pred hchhhhhhhhcCCc-EEEEEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCCCCCCCHHHHHHH
Q psy15036 96 RFLSLTTGLYRGTM-GFLLIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQRCREVVTPDQIMF 172 (179)
Q Consensus 96 ~~~~~~~~~~~~~~-~vilvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~~r~Vs~~e~~~~ 172 (179)
.|...... ....+ .+++|.|+.+.. ..|...+.+.... .|+++|+||+||.. +.+..++.++|
T Consensus 58 ~~~~~l~~-i~~~~~lIv~VVD~~D~~-----~s~~~~L~~~~~~-------kpviLViNK~DLl~-~~~~~~~i~~~ 121 (365)
T PRK13796 58 DFLKLLNG-IGDSDALVVNVVDIFDFN-----GSWIPGLHRFVGN-------NPVLLVGNKADLLP-KSVKKNKVKNW 121 (365)
T ss_pred HHHHHHHh-hcccCcEEEEEEECccCC-----CchhHHHHHHhCC-------CCEEEEEEchhhCC-CccCHHHHHHH
Confidence 44443333 34445 888899987643 4467777766554 36788999999964 45656666555
No 282
>cd01882 BMS1 Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Probab=96.07 E-value=0.039 Score=43.20 Aligned_cols=102 Identities=19% Similarity=0.097 Sum_probs=54.2
Q ss_pred eeEEE-EeCCCCc---eeEeeeccCCCc-ccCcceeeeeEEEEEecCCCee--eeCCCchhchhhhhhhhcCCcEEEEEE
Q psy15036 43 NFGTQ-LGRRGIP---LLKHLKYLGTGT-HGKTVGIVFPAISVTYSIGPRY--FRFPLVSRFLSLTTGLYRGTMGFLLIF 115 (179)
Q Consensus 43 ~~Kiv-lG~~gvG---~~~~~~~~~~~~-~~~Ti~~~~~~k~v~~~~~~~i--wDt~G~e~~~~~~~~~~~~~~~vilvy 115 (179)
...|. +|.+|+| +++.+....... .....| .+. .+... +..+ .||+|.- ..+. ...+.+|+++++.
T Consensus 39 ~~~i~ivG~~~~GKstl~~~l~~~~~~~~~~~~~g-~i~--i~~~~-~~~i~~vDtPg~~--~~~l-~~ak~aDvVllvi 111 (225)
T cd01882 39 PLVVAVVGPPGVGKTTLIKSLVKNYTKQNISDIKG-PIT--VVTGK-KRRLTFIECPNDI--NAMI-DIAKVADLVLLLI 111 (225)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhcccCccccccc-cEE--EEecC-CceEEEEeCCchH--HHHH-HHHHhcCEEEEEE
Confidence 35565 9999999 443443321111 111112 111 12224 5555 8999864 2232 2468899999999
Q ss_pred eCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCC
Q psy15036 116 DVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQR 160 (179)
Q Consensus 116 Dit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~ 160 (179)
|.+....... ...+..+... +. |.+++|.||.|+.+
T Consensus 112 Da~~~~~~~~-~~i~~~l~~~-g~-------p~vi~VvnK~D~~~ 147 (225)
T cd01882 112 DASFGFEMET-FEFLNILQVH-GF-------PRVMGVLTHLDLFK 147 (225)
T ss_pred ecCcCCCHHH-HHHHHHHHHc-CC-------CeEEEEEeccccCC
Confidence 9875433222 2233333322 11 45666899999853
No 283
>KOG1145|consensus
Probab=96.07 E-value=0.026 Score=49.57 Aligned_cols=68 Identities=12% Similarity=0.033 Sum_probs=51.6
Q ss_pred EEecCCCee--eeCCCchhchhhhhhhhcCCcEEEEEEeCCC---hhhHHHHHHHHHHHHHHhCCccCccccceEEEEee
Q psy15036 80 VTYSIGPRY--FRFPLVSRFLSLTTGLYRGTMGFLLIFDVTN---ENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGC 154 (179)
Q Consensus 80 v~~~~~~~i--wDt~G~e~~~~~~~~~~~~~~~vilvyDit~---~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGn 154 (179)
+.+..|+.+ .||+|+.-|..|+..=-+-+|.++||....| +++.+.++. ....+ .|+|+.-|
T Consensus 195 V~~p~G~~iTFLDTPGHaAF~aMRaRGA~vtDIvVLVVAadDGVmpQT~EaIkh-------Ak~A~------VpiVvAin 261 (683)
T KOG1145|consen 195 VTLPSGKSITFLDTPGHAAFSAMRARGANVTDIVVLVVAADDGVMPQTLEAIKH-------AKSAN------VPIVVAIN 261 (683)
T ss_pred EecCCCCEEEEecCCcHHHHHHHHhccCccccEEEEEEEccCCccHhHHHHHHH-------HHhcC------CCEEEEEe
Confidence 333338888 8999999999999888888999999996665 577666543 22333 68889999
Q ss_pred CCCcCC
Q psy15036 155 LELLQR 160 (179)
Q Consensus 155 K~Dl~~ 160 (179)
|+|..+
T Consensus 262 KiDkp~ 267 (683)
T KOG1145|consen 262 KIDKPG 267 (683)
T ss_pred ccCCCC
Confidence 999653
No 284
>PLN00116 translation elongation factor EF-2 subunit; Provisional
Probab=96.07 E-value=0.02 Score=53.26 Aligned_cols=61 Identities=15% Similarity=-0.091 Sum_probs=43.4
Q ss_pred eeCCCchhchhhhhhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcC
Q psy15036 89 FRFPLVSRFLSLTTGLYRGTMGFLLIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQ 159 (179)
Q Consensus 89 wDt~G~e~~~~~~~~~~~~~~~vilvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~ 159 (179)
.||+|+..|..-...-++.+|++|+|.|...--.-.....|.. +.. .+ .|++++.||.|+.
T Consensus 103 iDtPGh~dF~~e~~~al~~~D~ailVvda~~Gv~~~t~~~~~~-~~~---~~------~p~i~~iNK~D~~ 163 (843)
T PLN00116 103 IDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQ-ALG---ER------IRPVLTVNKMDRC 163 (843)
T ss_pred ECCCCHHHHHHHHHHHHhhcCEEEEEEECCCCCcccHHHHHHH-HHH---CC------CCEEEEEECCccc
Confidence 8999999998777777899999999999886533222233322 222 22 4667778999986
No 285
>PF06858 NOG1: Nucleolar GTP-binding protein 1 (NOG1); InterPro: IPR010674 This domain represents a conserved region of approximately 60 residues in length within nucleolar GTP-binding protein 1 (NOG1). The NOG1 family includes eukaryotic, bacterial and archaeal proteins. In Saccharomyces cerevisiae, the NOG1 gene has been shown to be essential for cell viability, suggesting that NOG1 may play an important role in nucleolar functions. In particular, NOG1 is believed to be functionally linked to ribosome biogenesis, which occurs in the nucleolus. In eukaryotes, NOG1 mutants were found to disrupt the biogenesis of the 60S ribosomal subunit []. The DRG and OBG proteins as well as the prokaryotic NOG-like proteins are homologous throughout their length to the amino half of eukaryotic NOG1, which contains the GTP binding motifs (IPR006073 from INTERPRO); the N-terminal GTP-binding motif is required for function.; GO: 0005525 GTP binding; PDB: 2E87_A.
Probab=96.03 E-value=0.036 Score=34.06 Aligned_cols=44 Identities=14% Similarity=0.022 Sum_probs=28.3
Q ss_pred CCcEEEEEEeCCChhh--HHHHHHHHHHHHHHhCCccCccccceEEEEeeCCC
Q psy15036 107 GTMGFLLIFDVTNENS--FKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLEL 157 (179)
Q Consensus 107 ~~~~vilvyDit~~~S--f~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~D 157 (179)
-.+++++++|++..-- .+.=-..+++++...++ .|+++|.||+|
T Consensus 13 L~~~ilfi~D~Se~CGysie~Q~~L~~~ik~~F~~-------~P~i~V~nK~D 58 (58)
T PF06858_consen 13 LADAILFIIDPSEQCGYSIEEQLSLFKEIKPLFPN-------KPVIVVLNKID 58 (58)
T ss_dssp T-SEEEEEE-TT-TTSS-HHHHHHHHHHHHHHTTT-------S-EEEEE--TT
T ss_pred hcceEEEEEcCCCCCCCCHHHHHHHHHHHHHHcCC-------CCEEEEEeccC
Confidence 3578889999988744 44445677888877765 48889999998
No 286
>KOG0082|consensus
Probab=95.98 E-value=0.049 Score=45.57 Aligned_cols=98 Identities=11% Similarity=0.096 Sum_probs=62.9
Q ss_pred eeeccCCCcccC-----------cceeeeeEEEEEecCCCee--eeCCCchhchhhhhhhhcCCcEEEEEEeCCChhhH-
Q psy15036 58 HLKYLGTGTHGK-----------TVGIVFPAISVTYSIGPRY--FRFPLVSRFLSLTTGLYRGTMGFLLIFDVTNENSF- 123 (179)
Q Consensus 58 ~~~~~~~~~~~~-----------Ti~~~~~~k~v~~~~~~~i--wDt~G~e~~~~~~~~~~~~~~~vilvyDit~~~Sf- 123 (179)
++.....++|.| |.|+. ...+.+. +..+ +|.+||..-+.=|-++|.+++++|+|.+++.-+-.
T Consensus 159 ~l~rI~~~~Y~PT~~DIL~~R~~T~GI~--e~~F~~k-~~~f~~~DvGGQRseRrKWihcFe~v~aviF~vslSeYdq~l 235 (354)
T KOG0082|consen 159 NLDRISSPDYVPTEQDILRSRVPTTGIV--EVEFTIK-GLKFRMFDVGGQRSERKKWIHCFEDVTAVIFCVSLSEYDQVL 235 (354)
T ss_pred hHHHhcCCCCCCCHHHHHhhccCcCCee--EEEEEeC-CCceEEEeCCCcHHHhhhHHHhhcCCCEEEEEEehhhhhhhc
Confidence 333445566666 55533 3456677 7776 99999988888888899999999999988765332
Q ss_pred ------HHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCC
Q psy15036 124 ------KDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQR 160 (179)
Q Consensus 124 ------~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~ 160 (179)
+.+..=++.+......+ -+...++||.-||.||-+
T Consensus 236 ~ED~~~NRM~eS~~LF~sI~n~~--~F~~tsiiLFLNK~DLFe 276 (354)
T KOG0082|consen 236 EEDETTNRMHESLKLFESICNNK--WFANTSIILFLNKKDLFE 276 (354)
T ss_pred ccccchhHHHHHHHHHHHHhcCc--ccccCcEEEEeecHHHHH
Confidence 22222222233333221 123367888899999954
No 287
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=95.97 E-value=0.021 Score=41.84 Aligned_cols=47 Identities=15% Similarity=0.087 Sum_probs=30.5
Q ss_pred hhcCCcEEEEEEeCCChhh--HHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCC
Q psy15036 104 LYRGTMGFLLIFDVTNENS--FKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQR 160 (179)
Q Consensus 104 ~~~~~~~vilvyDit~~~S--f~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~ 160 (179)
-+.++|.+++|.|..++.+ ...+..++ ...... .|+++|.||+|+..
T Consensus 5 ~l~~aD~il~VvD~~~p~~~~~~~i~~~l---~~~~~~-------~p~ilVlNKiDl~~ 53 (157)
T cd01858 5 VIDSSDVVIQVLDARDPMGTRCKHVEEYL---KKEKPH-------KHLIFVLNKCDLVP 53 (157)
T ss_pred hhhhCCEEEEEEECCCCccccCHHHHHHH---HhccCC-------CCEEEEEEchhcCC
Confidence 4678999999999988632 22223332 222222 36788899999954
No 288
>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains. The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.
Probab=95.80 E-value=0.16 Score=46.10 Aligned_cols=115 Identities=10% Similarity=0.041 Sum_probs=64.2
Q ss_pred ccCceeeEEE-EeCCCCc---eeEeeecc--CC-Ccc-cCcceeeeeEEEEEecCCCee--eeCCCchhch-------hh
Q psy15036 38 KEFSFNFGTQ-LGRRGIP---LLKHLKYL--GT-GTH-GKTVGIVFPAISVTYSIGPRY--FRFPLVSRFL-------SL 100 (179)
Q Consensus 38 ~~~~~~~Kiv-lG~~gvG---~~~~~~~~--~~-~~~-~~Ti~~~~~~k~v~~~~~~~i--wDt~G~e~~~-------~~ 100 (179)
++.++.++|+ +|..||| +++.+.+. +. ... ..|... .......+ +..+ +||+|-.... .+
T Consensus 113 ~~LdfslrIvLVGKTGVGKSSLINSILGekvf~vss~~~~TTr~--~ei~~~id-G~~L~VIDTPGL~dt~~dq~~neeI 189 (763)
T TIGR00993 113 DPLDFSLNILVLGKSGVGKSATINSIFGEVKFSTDAFGMGTTSV--QEIEGLVQ-GVKIRVIDTPGLKSSASDQSKNEKI 189 (763)
T ss_pred cccCcceEEEEECCCCCCHHHHHHHHhccccccccCCCCCceEE--EEEEEEEC-CceEEEEECCCCCccccchHHHHHH
Confidence 5667788997 9999999 33333321 11 111 223222 11223346 6666 9999965431 11
Q ss_pred ---hhhhhc--CCcEEEEEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcC
Q psy15036 101 ---TTGLYR--GTMGFLLIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQ 159 (179)
Q Consensus 101 ---~~~~~~--~~~~vilvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~ 159 (179)
...++. ..|++++|..++......+-..+++.+.+..+..+.+. .|||-+..|..
T Consensus 190 Lk~Ik~~Lsk~gpDVVLlV~RLd~~~~D~eD~~aLr~Iq~lFG~~Iwk~----tIVVFThgD~l 249 (763)
T TIGR00993 190 LSSVKKFIKKNPPDIVLYVDRLDMQTRDSNDLPLLRTITDVLGPSIWFN----AIVTLTHAASA 249 (763)
T ss_pred HHHHHHHHhcCCCCEEEEEEeCCCccccHHHHHHHHHHHHHhCHHhHcC----EEEEEeCCccC
Confidence 122433 58999999988754443333477888887777654322 34445555553
No 289
>PTZ00416 elongation factor 2; Provisional
Probab=95.79 E-value=0.037 Score=51.49 Aligned_cols=61 Identities=16% Similarity=-0.069 Sum_probs=43.2
Q ss_pred eeCCCchhchhhhhhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcC
Q psy15036 89 FRFPLVSRFLSLTTGLYRGTMGFLLIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQ 159 (179)
Q Consensus 89 wDt~G~e~~~~~~~~~~~~~~~vilvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~ 159 (179)
.||+|+..|..-...-++.+|++|+|.|.+..-.-..-..| ..+.+. + .|+|++.||+|+.
T Consensus 97 iDtPG~~~f~~~~~~al~~~D~ailVvda~~g~~~~t~~~~-~~~~~~---~------~p~iv~iNK~D~~ 157 (836)
T PTZ00416 97 IDSPGHVDFSSEVTAALRVTDGALVVVDCVEGVCVQTETVL-RQALQE---R------IRPVLFINKVDRA 157 (836)
T ss_pred EcCCCHHhHHHHHHHHHhcCCeEEEEEECCCCcCccHHHHH-HHHHHc---C------CCEEEEEEChhhh
Confidence 89999999987777788999999999998774222222233 333322 2 3667778999986
No 290
>KOG1144|consensus
Probab=95.63 E-value=0.036 Score=50.38 Aligned_cols=65 Identities=9% Similarity=-0.041 Sum_probs=48.5
Q ss_pred EEecCCCeeeeCCCchhchhhhhhhhcCCcEEEEEEeCCC---hhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCC
Q psy15036 80 VTYSIGPRYFRFPLVSRFLSLTTGLYRGTMGFLLIFDVTN---ENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLE 156 (179)
Q Consensus 80 v~~~~~~~iwDt~G~e~~~~~~~~~~~~~~~vilvyDit~---~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~ 156 (179)
+.+. |-.+.||+|++.|..++...-.-+|.+|||.|+.. +++.+.+... ...+ .|+|+.-||+
T Consensus 537 ~kvP-g~lvIdtpghEsFtnlRsrgsslC~~aIlvvdImhGlepqtiESi~lL-------R~rk------tpFivALNKi 602 (1064)
T KOG1144|consen 537 LKVP-GLLVIDTPGHESFTNLRSRGSSLCDLAILVVDIMHGLEPQTIESINLL-------RMRK------TPFIVALNKI 602 (1064)
T ss_pred cCCC-eeEEecCCCchhhhhhhhccccccceEEEEeehhccCCcchhHHHHHH-------HhcC------CCeEEeehhh
Confidence 3344 44449999999999999999999999999999875 4555544332 2223 6888889999
Q ss_pred Cc
Q psy15036 157 LL 158 (179)
Q Consensus 157 Dl 158 (179)
|.
T Consensus 603 DR 604 (1064)
T KOG1144|consen 603 DR 604 (1064)
T ss_pred hh
Confidence 96
No 291
>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional
Probab=95.57 E-value=0.035 Score=48.24 Aligned_cols=64 Identities=8% Similarity=-0.029 Sum_probs=41.1
Q ss_pred eeCCCchhchhhhhhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCC
Q psy15036 89 FRFPLVSRFLSLTTGLYRGTMGFLLIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQR 160 (179)
Q Consensus 89 wDt~G~e~~~~~~~~~~~~~~~vilvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~ 160 (179)
.|++|+++|-...-.-...+|++++|.|.+..-.-......+..+ +...- +++|+|-||+|+.+
T Consensus 122 IDtPGH~~fi~~m~~g~~~~D~alLVVda~~g~~~~qT~ehl~i~-~~lgi-------~~iIVvlNKiDlv~ 185 (460)
T PTZ00327 122 VDCPGHDILMATMLNGAAVMDAALLLIAANESCPQPQTSEHLAAV-EIMKL-------KHIIILQNKIDLVK 185 (460)
T ss_pred eeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCccchhhHHHHHHH-HHcCC-------CcEEEEEecccccC
Confidence 899999998655445567899999999998631111111222222 22222 46788899999964
No 292
>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....
Probab=95.56 E-value=0.092 Score=40.64 Aligned_cols=92 Identities=16% Similarity=0.086 Sum_probs=44.7
Q ss_pred eEEE-EeCCCCc---eeEeeecc--CCCc---ccCcceeeeeEEEEEecCCCee--eeCCCchhc--------hhhh---
Q psy15036 44 FGTQ-LGRRGIP---LLKHLKYL--GTGT---HGKTVGIVFPAISVTYSIGPRY--FRFPLVSRF--------LSLT--- 101 (179)
Q Consensus 44 ~Kiv-lG~~gvG---~~~~~~~~--~~~~---~~~Ti~~~~~~k~v~~~~~~~i--wDt~G~e~~--------~~~~--- 101 (179)
++|| +|..|+| +...+.+. |... ...|.... .....++ +..+ +||+|--.- ..+.
T Consensus 1 l~IlllG~tGsGKSs~~N~ilg~~~f~~~~~~~~~t~~~~--~~~~~~~-g~~v~VIDTPGl~d~~~~~~~~~~~i~~~l 77 (212)
T PF04548_consen 1 LRILLLGKTGSGKSSLGNSILGKEVFKSGSSAKSVTQECQ--KYSGEVD-GRQVTVIDTPGLFDSDGSDEEIIREIKRCL 77 (212)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSS-SS--TTTSS--SS-E--EEEEEET-TEEEEEEE--SSEETTEEHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhcccceeeccccCCcccccc--eeeeeec-ceEEEEEeCCCCCCCcccHHHHHHHHHHHH
Confidence 4787 9999999 33333321 2222 12233322 3344667 7777 899983211 1111
Q ss_pred hhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHhCCc
Q psy15036 102 TGLYRGTMGFLLIFDVTNENSFKDVEKWLLQIKVMDGAL 140 (179)
Q Consensus 102 ~~~~~~~~~vilvyDit~~~Sf~~l~~w~~~i~~~~~~~ 140 (179)
.....+.|+++||..+.+. +-.. ..-++.+.+..+..
T Consensus 78 ~~~~~g~ha~llVi~~~r~-t~~~-~~~l~~l~~~FG~~ 114 (212)
T PF04548_consen 78 SLCSPGPHAFLLVIPLGRF-TEED-REVLELLQEIFGEE 114 (212)
T ss_dssp HHTTT-ESEEEEEEETTB--SHHH-HHHHHHHHHHHCGG
T ss_pred HhccCCCeEEEEEEecCcc-hHHH-HHHHHHHHHHccHH
Confidence 1234579999999998822 2222 33444455555543
No 293
>PRK07560 elongation factor EF-2; Reviewed
Probab=95.53 E-value=0.041 Score=50.45 Aligned_cols=61 Identities=10% Similarity=-0.154 Sum_probs=42.5
Q ss_pred eeCCCchhchhhhhhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcC
Q psy15036 89 FRFPLVSRFLSLTTGLYRGTMGFLLIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQ 159 (179)
Q Consensus 89 wDt~G~e~~~~~~~~~~~~~~~vilvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~ 159 (179)
.||+|+..|.......++.+|++|+|.|....-.-.....|.. +.+. . .|+|++.||+|+.
T Consensus 92 iDtPG~~df~~~~~~~l~~~D~avlVvda~~g~~~~t~~~~~~-~~~~--~-------~~~iv~iNK~D~~ 152 (731)
T PRK07560 92 IDTPGHVDFGGDVTRAMRAVDGAIVVVDAVEGVMPQTETVLRQ-ALRE--R-------VKPVLFINKVDRL 152 (731)
T ss_pred EcCCCccChHHHHHHHHHhcCEEEEEEECCCCCCccHHHHHHH-HHHc--C-------CCeEEEEECchhh
Confidence 8999999998877888999999999999776432222233332 2222 1 2346778999975
No 294
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=95.52 E-value=0.04 Score=40.31 Aligned_cols=43 Identities=7% Similarity=-0.065 Sum_probs=28.0
Q ss_pred cEEEEEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCC
Q psy15036 109 MGFLLIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQR 160 (179)
Q Consensus 109 ~~vilvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~ 160 (179)
|.+++|.|..++.+... .|+.. ......+ .|+++|.||+|+..
T Consensus 1 Dvvl~VvD~~~p~~~~~--~~i~~-~~~~~~~------~p~IiVlNK~Dl~~ 43 (155)
T cd01849 1 DVILEVLDARDPLGTRS--PDIER-VLIKEKG------KKLILVLNKADLVP 43 (155)
T ss_pred CEEEEEEeccCCccccC--HHHHH-HHHhcCC------CCEEEEEechhcCC
Confidence 67899999988866653 34442 1111122 47788899999953
No 295
>KOG0462|consensus
Probab=95.48 E-value=0.078 Score=46.68 Aligned_cols=63 Identities=16% Similarity=0.070 Sum_probs=44.1
Q ss_pred eeCCCchhchhhhhhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCCC
Q psy15036 89 FRFPLVSRFLSLTTGLYRGTMGFLLIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQRC 161 (179)
Q Consensus 89 wDt~G~e~~~~~~~~~~~~~~~vilvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~~ 161 (179)
.||+|+..|..--...+.-++|++||.|.+.----+-+-.++..+. .+ ..+|.|-||+|+...
T Consensus 130 IDTPGHvDFs~EVsRslaac~G~lLvVDA~qGvqAQT~anf~lAfe----~~------L~iIpVlNKIDlp~a 192 (650)
T KOG0462|consen 130 IDTPGHVDFSGEVSRSLAACDGALLVVDASQGVQAQTVANFYLAFE----AG------LAIIPVLNKIDLPSA 192 (650)
T ss_pred ecCCCcccccceehehhhhcCceEEEEEcCcCchHHHHHHHHHHHH----cC------CeEEEeeeccCCCCC
Confidence 9999999998877778889999999999875322222222222222 12 467788899999763
No 296
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=95.42 E-value=0.018 Score=42.03 Aligned_cols=50 Identities=14% Similarity=0.124 Sum_probs=33.3
Q ss_pred eeEEE-EeCCCCc---eeEeeeccCCCcccCcceeeeeEEEEEecCCCee-eeCCC
Q psy15036 43 NFGTQ-LGRRGIP---LLKHLKYLGTGTHGKTVGIVFPAISVTYSIGPRY-FRFPL 93 (179)
Q Consensus 43 ~~Kiv-lG~~gvG---~~~~~~~~~~~~~~~Ti~~~~~~k~v~~~~~~~i-wDt~G 93 (179)
..+++ +|.+++| +++.+.......+.++.|.+.....+..+ +.-. |||+|
T Consensus 101 ~~~~~~ig~~~~Gkssl~~~l~~~~~~~~~~~~~~t~~~~~~~~~-~~~~~~DtpG 155 (156)
T cd01859 101 EGKVGVVGYPNVGKSSIINALKGRHSASTSPSPGYTKGEQLVKIT-SKIYLLDTPG 155 (156)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCccccCCCCCeeeeeEEEEcC-CCEEEEECcC
Confidence 46777 9999999 55565555555667777765544444455 4333 99998
No 297
>COG0536 Obg Predicted GTPase [General function prediction only]
Probab=95.36 E-value=0.17 Score=42.16 Aligned_cols=67 Identities=15% Similarity=0.064 Sum_probs=43.7
Q ss_pred eeCCCchh----chhhhhhhhc---CCcEEEEEEeCCChh---hHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCc
Q psy15036 89 FRFPLVSR----FLSLTTGLYR---GTMGFLLIFDVTNEN---SFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELL 158 (179)
Q Consensus 89 wDt~G~e~----~~~~~~~~~~---~~~~vilvyDit~~~---Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl 158 (179)
=|++|--+ -..+-..|+| .+.+++.|.|++..+ ..++.+....++..+...-. + -|.+||.||+|+
T Consensus 212 ADIPGLIEGAs~G~GLG~~FLrHIERt~vL~hviD~s~~~~~dp~~~~~~i~~EL~~Y~~~L~---~-K~~ivv~NKiD~ 287 (369)
T COG0536 212 ADIPGLIEGASEGVGLGLRFLRHIERTRVLLHVIDLSPIDGRDPIEDYQTIRNELEKYSPKLA---E-KPRIVVLNKIDL 287 (369)
T ss_pred ecCcccccccccCCCccHHHHHHHHhhheeEEEEecCcccCCCHHHHHHHHHHHHHHhhHHhc---c-CceEEEEeccCC
Confidence 67776422 2234444555 588999999998765 47777777777776654311 1 266788999996
Q ss_pred C
Q psy15036 159 Q 159 (179)
Q Consensus 159 ~ 159 (179)
.
T Consensus 288 ~ 288 (369)
T COG0536 288 P 288 (369)
T ss_pred C
Confidence 3
No 298
>COG2262 HflX GTPases [General function prediction only]
Probab=95.34 E-value=0.14 Score=43.43 Aligned_cols=108 Identities=10% Similarity=-0.039 Sum_probs=70.1
Q ss_pred eEE-EEeCCCCc---eeEeeeccC---CCcccCcceeeeeEEEEEecCCCee--eeCCCchhc--hhhhhhh------hc
Q psy15036 44 FGT-QLGRRGIP---LLKHLKYLG---TGTHGKTVGIVFPAISVTYSIGPRY--FRFPLVSRF--LSLTTGL------YR 106 (179)
Q Consensus 44 ~Ki-vlG~~gvG---~~~~~~~~~---~~~~~~Ti~~~~~~k~v~~~~~~~i--wDt~G~e~~--~~~~~~~------~~ 106 (179)
..| ++|=-+.| +++.+++.. ....-.|... ..+.+.+.+|..+ =||.|--+- ..+...| ..
T Consensus 193 p~vaLvGYTNAGKSTL~N~LT~~~~~~~d~LFATLdp--ttR~~~l~~g~~vlLtDTVGFI~~LP~~LV~AFksTLEE~~ 270 (411)
T COG2262 193 PLVALVGYTNAGKSTLFNALTGADVYVADQLFATLDP--TTRRIELGDGRKVLLTDTVGFIRDLPHPLVEAFKSTLEEVK 270 (411)
T ss_pred CeEEEEeeccccHHHHHHHHhccCeeccccccccccC--ceeEEEeCCCceEEEecCccCcccCChHHHHHHHHHHHHhh
Confidence 345 39999999 665555321 1122234432 3456666634555 788884221 1222222 45
Q ss_pred CCcEEEEEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcC
Q psy15036 107 GTMGFLLIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQ 159 (179)
Q Consensus 107 ~~~~vilvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~ 159 (179)
++|.++.|.|.++++.-+.+..-.+.+.+..... +|+|+|-||.|+-
T Consensus 271 ~aDlllhVVDaSdp~~~~~~~~v~~vL~el~~~~------~p~i~v~NKiD~~ 317 (411)
T COG2262 271 EADLLLHVVDASDPEILEKLEAVEDVLAEIGADE------IPIILVLNKIDLL 317 (411)
T ss_pred cCCEEEEEeecCChhHHHHHHHHHHHHHHcCCCC------CCEEEEEeccccc
Confidence 8999999999999988888777777777765554 6899999999964
No 299
>TIGR03348 VI_IcmF type VI secretion protein IcmF. Members of this protein family are IcmF homologs and tend to be associated with type VI secretion systems.
Probab=95.20 E-value=0.074 Score=51.28 Aligned_cols=47 Identities=13% Similarity=0.102 Sum_probs=34.8
Q ss_pred CCcEEEEEEeCCChhh---------HHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcC
Q psy15036 107 GTMGFLLIFDVTNENS---------FKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQ 159 (179)
Q Consensus 107 ~~~~vilvyDit~~~S---------f~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~ 159 (179)
-.+|||++.|+.+--+ -..++..+.++.+..+-. .||.||-+|+|+-
T Consensus 201 plnGvil~vs~~~Ll~~~~~~~~~~a~~lR~rl~el~~~lg~~------~PVYvv~Tk~Dll 256 (1169)
T TIGR03348 201 PLNGVVVTVSLADLLTADPAERKAHARAIRQRLQELREQLGAR------FPVYLVLTKADLL 256 (1169)
T ss_pred CCCeEEEEEEHHHHhCCCHHHHHHHHHHHHHHHHHHHHHhCCC------CCEEEEEecchhh
Confidence 4899999998765421 134566777777776665 7899999999975
No 300
>PF05783 DLIC: Dynein light intermediate chain (DLIC); InterPro: IPR022780 This entry consists of several eukaryotic dynein light intermediate chain proteins. The light intermediate chains (LICs) of cytoplasmic dynein consist of multiple isoforms, which undergo post-translational modification to produce a large number of species. DLIC1 is known to be involved in assembly, organisation, and function of centrosomes and mitotic spindles when bound to pericentrin [, ]. DLIC2 is a subunit of cytoplasmic dynein 2 that may play a role in maintaining Golgi organisation by binding cytoplasmic dynein 2 to its Golgi-associated cargo [].
Probab=95.14 E-value=0.067 Score=46.59 Aligned_cols=90 Identities=16% Similarity=0.223 Sum_probs=57.1
Q ss_pred eEEE-EeCCCCc---eeEeeeccCCCcccCcceeeeeEEEEEecCCC---ee--eeCCCchhchhhhhhhhcC----CcE
Q psy15036 44 FGTQ-LGRRGIP---LLKHLKYLGTGTHGKTVGIVFPAISVTYSIGP---RY--FRFPLVSRFLSLTTGLYRG----TMG 110 (179)
Q Consensus 44 ~Kiv-lG~~gvG---~~~~~~~~~~~~~~~Ti~~~~~~k~v~~~~~~---~i--wDt~G~e~~~~~~~~~~~~----~~~ 110 (179)
--|+ +|+.++| ++.++.. .+.+.++.|.+|..-.+.-+... ++ |-..|...+..+.+.-+.. --.
T Consensus 26 k~vlvlG~~~~GKttli~~L~~--~e~~~~~~aLeYty~~v~d~~~dd~~rl~vw~L~g~~~~~~LLk~~lt~~~l~~t~ 103 (472)
T PF05783_consen 26 KSVLVLGDKGSGKTTLIARLQG--IEDPKKGLALEYTYLDVKDEDRDDLARLNVWELDGDPSHSDLLKFALTPENLPNTL 103 (472)
T ss_pred ceEEEEeCCCCchHHHHHHhhc--cCCCCCCcccceEEEeeccCcCCcCceeeEEEcCCCcchHhHhcccCCcccccceE
Confidence 3465 9999999 6555553 45677888887754333222011 12 9888876666655443332 357
Q ss_pred EEEEEeCCChhhH-HHHHHHHHHHHH
Q psy15036 111 FLLIFDVTNENSF-KDVEKWLLQIKV 135 (179)
Q Consensus 111 vilvyDit~~~Sf-~~l~~w~~~i~~ 135 (179)
+|||.|++.+-.+ +.|.+|+..+++
T Consensus 104 vvIvlDlS~PW~~~esL~~W~~vl~~ 129 (472)
T PF05783_consen 104 VVIVLDLSKPWNIMESLEKWLSVLRE 129 (472)
T ss_pred EEEEecCCChHHHHHHHHHHHHHHHH
Confidence 7889999999765 466777766543
No 301
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=95.13 E-value=0.037 Score=43.87 Aligned_cols=67 Identities=15% Similarity=0.012 Sum_probs=34.2
Q ss_pred eeCCCchhchhhhhhhh--------cCCcEEEEEEeCCChhh-HHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcC
Q psy15036 89 FRFPLVSRFLSLTTGLY--------RGTMGFLLIFDVTNENS-FKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQ 159 (179)
Q Consensus 89 wDt~G~e~~~~~~~~~~--------~~~~~vilvyDit~~~S-f~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~ 159 (179)
+||+||.++...+.... ...-+++++.|...-.+ -.-+..++-.+....... .|.|.|-||+|+.
T Consensus 96 ~DtPGQiElf~~~~~~~~i~~~L~~~~~~~~v~LvD~~~~~~~~~f~s~~L~s~s~~~~~~------lP~vnvlsK~Dl~ 169 (238)
T PF03029_consen 96 FDTPGQIELFTHSDSGRKIVERLQKNGRLVVVFLVDSSFCSDPSKFVSSLLLSLSIMLRLE------LPHVNVLSKIDLL 169 (238)
T ss_dssp EE--SSHHHHHHSHHHHHHHHTSSS----EEEEEE-GGG-SSHHHHHHHHHHHHHHHHHHT------SEEEEEE--GGGS
T ss_pred EeCCCCEEEEEechhHHHHHHHHhhhcceEEEEEEecccccChhhHHHHHHHHHHHHhhCC------CCEEEeeeccCcc
Confidence 89999998876665554 45667888888654433 222233333333222222 6888899999997
Q ss_pred CC
Q psy15036 160 RC 161 (179)
Q Consensus 160 ~~ 161 (179)
++
T Consensus 170 ~~ 171 (238)
T PF03029_consen 170 SK 171 (238)
T ss_dssp -H
T ss_pred cc
Confidence 63
No 302
>KOG1489|consensus
Probab=94.49 E-value=0.11 Score=42.86 Aligned_cols=67 Identities=13% Similarity=0.248 Sum_probs=46.8
Q ss_pred eeCCCchh----chhhhhhhhc---CCcEEEEEEeCCCh---hhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCc
Q psy15036 89 FRFPLVSR----FLSLTTGLYR---GTMGFLLIFDVTNE---NSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELL 158 (179)
Q Consensus 89 wDt~G~e~----~~~~~~~~~~---~~~~vilvyDit~~---~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl 158 (179)
=|.+|--+ -+.+-..|+| .+..+++|.|++.+ +.++.++....++..+...-. + -|.++|+||+|+
T Consensus 249 ADiPGiI~GAh~nkGlG~~FLrHiER~~~l~fVvD~s~~~~~~p~~~~~lL~~ELe~yek~L~---~-rp~liVaNKiD~ 324 (366)
T KOG1489|consen 249 ADIPGIIEGAHMNKGLGYKFLRHIERCKGLLFVVDLSGKQLRNPWQQLQLLIEELELYEKGLA---D-RPALIVANKIDL 324 (366)
T ss_pred ccCccccccccccCcccHHHHHHHHhhceEEEEEECCCcccCCHHHHHHHHHHHHHHHhhhhc---c-CceEEEEeccCc
Confidence 47776432 2334455555 58999999999999 888888887777765543210 1 367788999999
Q ss_pred C
Q psy15036 159 Q 159 (179)
Q Consensus 159 ~ 159 (179)
.
T Consensus 325 ~ 325 (366)
T KOG1489|consen 325 P 325 (366)
T ss_pred h
Confidence 4
No 303
>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]
Probab=94.49 E-value=0.15 Score=45.76 Aligned_cols=109 Identities=12% Similarity=0.048 Sum_probs=66.4
Q ss_pred eEEE-EeCCCCc---eeEeeeccCC-CcccCcceeeeeEEEEEecCCCee--eeCCCchhch------hhhhhhhc--CC
Q psy15036 44 FGTQ-LGRRGIP---LLKHLKYLGT-GTHGKTVGIVFPAISVTYSIGPRY--FRFPLVSRFL------SLTTGLYR--GT 108 (179)
Q Consensus 44 ~Kiv-lG~~gvG---~~~~~~~~~~-~~~~~Ti~~~~~~k~v~~~~~~~i--wDt~G~e~~~------~~~~~~~~--~~ 108 (179)
.+|- +|+++|| +++.+++... -..=|-+-+|.+.-.+... +..+ .|.+|--... ...+.|+. ..
T Consensus 4 ~~valvGNPNvGKTtlFN~LTG~~q~VgNwpGvTVEkkeg~~~~~-~~~i~ivDLPG~YSL~~~S~DE~Var~~ll~~~~ 82 (653)
T COG0370 4 LTVALVGNPNVGKTTLFNALTGANQKVGNWPGVTVEKKEGKLKYK-GHEIEIVDLPGTYSLTAYSEDEKVARDFLLEGKP 82 (653)
T ss_pred ceEEEecCCCccHHHHHHHHhccCceecCCCCeeEEEEEEEEEec-CceEEEEeCCCcCCCCCCCchHHHHHHHHhcCCC
Confidence 4574 9999999 6666664321 1112333345666666777 7766 8988864332 34455554 46
Q ss_pred cEEEEEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCCCCCCC
Q psy15036 109 MGFLLIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQRCREVV 165 (179)
Q Consensus 109 ~~vilvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~~r~Vs 165 (179)
|++|-|.|-+|-+-=-.+ --++.+. . .|++++-|+.|+.+++-+.
T Consensus 83 D~ivnVvDAtnLeRnLyl---tlQLlE~---g------~p~ilaLNm~D~A~~~Gi~ 127 (653)
T COG0370 83 DLIVNVVDATNLERNLYL---TLQLLEL---G------IPMILALNMIDEAKKRGIR 127 (653)
T ss_pred CEEEEEcccchHHHHHHH---HHHHHHc---C------CCeEEEeccHhhHHhcCCc
Confidence 999999999986432222 1122222 2 3678889999997755544
No 304
>KOG0468|consensus
Probab=94.39 E-value=0.069 Score=48.10 Aligned_cols=60 Identities=17% Similarity=0.058 Sum_probs=45.9
Q ss_pred eeCCCchhchhhhhhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCc
Q psy15036 89 FRFPLVSRFLSLTTGLYRGTMGFLLIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELL 158 (179)
Q Consensus 89 wDt~G~e~~~~~~~~~~~~~~~vilvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl 158 (179)
.||+|+-.|..-...-++-+|++++|+|+..--+++- .+.++.+.+ +. .|+++|.||.|.
T Consensus 202 lDTPGHVnF~DE~ta~l~~sDgvVlvvDv~EGVmlnt-Er~ikhaiq---~~------~~i~vviNKiDR 261 (971)
T KOG0468|consen 202 LDTPGHVNFSDETTASLRLSDGVVLVVDVAEGVMLNT-ERIIKHAIQ---NR------LPIVVVINKVDR 261 (971)
T ss_pred ecCCCcccchHHHHHHhhhcceEEEEEEcccCceeeH-HHHHHHHHh---cc------CcEEEEEehhHH
Confidence 8999999999888888999999999999987655543 233333222 22 688899999996
No 305
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=94.12 E-value=0.05 Score=39.19 Aligned_cols=49 Identities=12% Similarity=0.009 Sum_probs=29.0
Q ss_pred EEE-EeCCCCc---eeEeeeccCCCcccCcceeeeeEEEEEecCCCee-eeCCCc
Q psy15036 45 GTQ-LGRRGIP---LLKHLKYLGTGTHGKTVGIVFPAISVTYSIGPRY-FRFPLV 94 (179)
Q Consensus 45 Kiv-lG~~gvG---~~~~~~~~~~~~~~~Ti~~~~~~k~v~~~~~~~i-wDt~G~ 94 (179)
+++ +|.+||| +++.+..........+.|.+.....+.++ +... |||+|-
T Consensus 85 ~~~~~G~~~vGKstlin~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~DtpG~ 138 (141)
T cd01857 85 TIGLVGYPNVGKSSLINALVGKKKVSVSATPGKTKHFQTIFLT-PTITLCDCPGL 138 (141)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCceeeCCCCCcccceEEEEeC-CCEEEEECCCc
Confidence 776 9999999 55444432221222333334445566777 5544 999984
No 306
>COG3596 Predicted GTPase [General function prediction only]
Probab=94.09 E-value=0.06 Score=43.56 Aligned_cols=109 Identities=13% Similarity=0.102 Sum_probs=59.7
Q ss_pred eeEEE-EeCCCCceeEeeeccCCCcccC--cce--eeeeEE-EEEecCCCee--eeCCCchh-------chhhhhhhhcC
Q psy15036 43 NFGTQ-LGRRGIPLLKHLKYLGTGTHGK--TVG--IVFPAI-SVTYSIGPRY--FRFPLVSR-------FLSLTTGLYRG 107 (179)
Q Consensus 43 ~~Kiv-lG~~gvG~~~~~~~~~~~~~~~--Ti~--~~~~~k-~v~~~~~~~i--wDt~G~e~-------~~~~~~~~~~~ 107 (179)
...|+ +|..|+|...-+...|..+..+ -+| .+...+ ...++ ++.+ ||++|-+. ++..-..++..
T Consensus 39 pvnvLi~G~TG~GKSSliNALF~~~~~~v~~vg~~t~~~~~~~~~~~-~~~l~lwDtPG~gdg~~~D~~~r~~~~d~l~~ 117 (296)
T COG3596 39 PVNVLLMGATGAGKSSLINALFQGEVKEVSKVGVGTDITTRLRLSYD-GENLVLWDTPGLGDGKDKDAEHRQLYRDYLPK 117 (296)
T ss_pred ceeEEEecCCCCcHHHHHHHHHhccCceeeecccCCCchhhHHhhcc-ccceEEecCCCcccchhhhHHHHHHHHHHhhh
Confidence 57786 9999999221122222111111 111 111111 12234 4444 99999765 56666778889
Q ss_pred CcEEEEEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCC
Q psy15036 108 TMGFLLIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQR 160 (179)
Q Consensus 108 ~~~vilvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~ 160 (179)
.|.++++-+..++.=--.. +.+.++.-..-.. +++++-|.+|...
T Consensus 118 ~DLvL~l~~~~draL~~d~-~f~~dVi~~~~~~-------~~i~~VtQ~D~a~ 162 (296)
T COG3596 118 LDLVLWLIKADDRALGTDE-DFLRDVIILGLDK-------RVLFVVTQADRAE 162 (296)
T ss_pred ccEEEEeccCCCccccCCH-HHHHHHHHhccCc-------eeEEEEehhhhhc
Confidence 9988888888876322222 3333343333322 6677789999754
No 307
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=93.87 E-value=0.049 Score=40.53 Aligned_cols=53 Identities=9% Similarity=-0.110 Sum_probs=33.4
Q ss_pred hchhhhhhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCC
Q psy15036 96 RFLSLTTGLYRGTMGFLLIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQR 160 (179)
Q Consensus 96 ~~~~~~~~~~~~~~~vilvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~ 160 (179)
+..........++|.+++|+|.+++.+.... .+ .+.... .++++|.||+|+.+
T Consensus 8 ~~~~~~~~~i~~aD~il~v~D~~~~~~~~~~-~i----~~~~~~-------k~~ilVlNK~Dl~~ 60 (171)
T cd01856 8 KALRQIKEKLKLVDLVIEVRDARIPLSSRNP-LL----EKILGN-------KPRIIVLNKADLAD 60 (171)
T ss_pred HHHHHHHHHHhhCCEEEEEeeccCccCcCCh-hh----HhHhcC-------CCEEEEEehhhcCC
Confidence 3334445678899999999999876543221 12 222222 25678899999954
No 308
>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence. IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.
Probab=93.85 E-value=0.13 Score=43.54 Aligned_cols=104 Identities=13% Similarity=0.150 Sum_probs=47.7
Q ss_pred eeeEE-EEeCCCCc---eeEeeeccCCCcccC-ccee---eeeEEEEEecCC-Cee--eeCCCchhchhhhhhh-----h
Q psy15036 42 FNFGT-QLGRRGIP---LLKHLKYLGTGTHGK-TVGI---VFPAISVTYSIG-PRY--FRFPLVSRFLSLTTGL-----Y 105 (179)
Q Consensus 42 ~~~Ki-vlG~~gvG---~~~~~~~~~~~~~~~-Ti~~---~~~~k~v~~~~~-~~i--wDt~G~e~~~~~~~~~-----~ 105 (179)
..+.| |.|++|+| +++-+.+..+++... ..|+ +-....+... . ..+ ||.+|-..-......| +
T Consensus 34 ~~l~IaV~G~sGsGKSSfINalrGl~~~d~~aA~tGv~etT~~~~~Y~~p-~~pnv~lWDlPG~gt~~f~~~~Yl~~~~~ 112 (376)
T PF05049_consen 34 APLNIAVTGESGSGKSSFINALRGLGHEDEGAAPTGVVETTMEPTPYPHP-KFPNVTLWDLPGIGTPNFPPEEYLKEVKF 112 (376)
T ss_dssp --EEEEEEESTTSSHHHHHHHHTT--TTSTTS--SSSHSCCTS-EEEE-S-S-TTEEEEEE--GGGSS--HHHHHHHTTG
T ss_pred CceEEEEECCCCCCHHHHHHHHhCCCCCCcCcCCCCCCcCCCCCeeCCCC-CCCCCeEEeCCCCCCCCCCHHHHHHHccc
Confidence 35778 49999999 555554443332221 1111 1111222332 2 123 9999965433333333 4
Q ss_pred cCCcEEEEEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCc
Q psy15036 106 RGTMGFLLIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELL 158 (179)
Q Consensus 106 ~~~~~vilvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl 158 (179)
..-|.+|++.+ +.|....-|+....+..+. ++.+|-+|+|.
T Consensus 113 ~~yD~fiii~s----~rf~~ndv~La~~i~~~gK--------~fyfVRTKvD~ 153 (376)
T PF05049_consen 113 YRYDFFIIISS----ERFTENDVQLAKEIQRMGK--------KFYFVRTKVDS 153 (376)
T ss_dssp GG-SEEEEEES----SS--HHHHHHHHHHHHTT---------EEEEEE--HHH
T ss_pred cccCEEEEEeC----CCCchhhHHHHHHHHHcCC--------cEEEEEecccc
Confidence 46798888876 4555555444443333332 67888999996
No 309
>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]
Probab=93.77 E-value=0.23 Score=45.32 Aligned_cols=65 Identities=12% Similarity=-0.090 Sum_probs=46.8
Q ss_pred Cee--eeCCCchhchhhhhhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCC
Q psy15036 86 PRY--FRFPLVSRFLSLTTGLYRGTMGFLLIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQR 160 (179)
Q Consensus 86 ~~i--wDt~G~e~~~~~~~~~~~~~~~vilvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~ 160 (179)
..+ .||+|+-.|..-...-++-+|++++|+|...--..+.-.-|....+ .+ .|.+++-||.|...
T Consensus 76 ~~iNlIDTPGHVDFt~EV~rslrvlDgavvVvdaveGV~~QTEtv~rqa~~----~~------vp~i~fiNKmDR~~ 142 (697)
T COG0480 76 YRINLIDTPGHVDFTIEVERSLRVLDGAVVVVDAVEGVEPQTETVWRQADK----YG------VPRILFVNKMDRLG 142 (697)
T ss_pred eEEEEeCCCCccccHHHHHHHHHhhcceEEEEECCCCeeecHHHHHHHHhh----cC------CCeEEEEECccccc
Confidence 555 8999999999888889999999999999876533333334533222 22 46667789999743
No 310
>KOG3905|consensus
Probab=93.56 E-value=0.31 Score=40.62 Aligned_cols=91 Identities=18% Similarity=0.156 Sum_probs=56.8
Q ss_pred eEEE-EeCCCCc---eeEeeeccCCCcccCcceeeeeEEEEEecC-C--Cee--eeCCCchhchhhhhhhhcCC----cE
Q psy15036 44 FGTQ-LGRRGIP---LLKHLKYLGTGTHGKTVGIVFPAISVTYSI-G--PRY--FRFPLVSRFLSLTTGLYRGT----MG 110 (179)
Q Consensus 44 ~Kiv-lG~~gvG---~~~~~~~~~~~~~~~Ti~~~~~~k~v~~~~-~--~~i--wDt~G~e~~~~~~~~~~~~~----~~ 110 (179)
-.|+ +|+.|.| ++.++.+. +.+.+--|.++..-.++-.. + .++ |-..|.--...+...-+... ..
T Consensus 53 k~VlvlGdn~sGKtsLi~klqg~--e~~KkgsgLeY~yl~V~de~RDd~tr~~VWiLDGd~~h~~LLk~al~ats~aetl 130 (473)
T KOG3905|consen 53 KNVLVLGDNGSGKTSLISKLQGS--ETVKKGSGLEYLYLHVHDEDRDDLTRCNVWILDGDLYHKGLLKFALPATSLAETL 130 (473)
T ss_pred CeEEEEccCCCchhHHHHHhhcc--cccCCCCCcceEEEecccccchhhhhcceEEecCchhhhhHHhhcccccCccceE
Confidence 3466 9999999 77777753 45666666666432222110 0 111 88777665544444333322 46
Q ss_pred EEEEEeCCCh-hhHHHHHHHHHHHHHH
Q psy15036 111 FLLIFDVTNE-NSFKDVEKWLLQIKVM 136 (179)
Q Consensus 111 vilvyDit~~-~Sf~~l~~w~~~i~~~ 136 (179)
+||+.|++++ .-.+.+++|..-++++
T Consensus 131 viltasms~Pw~~lesLqkWa~Vl~eh 157 (473)
T KOG3905|consen 131 VILTASMSNPWTLLESLQKWASVLREH 157 (473)
T ss_pred EEEEEecCCcHHHHHHHHHHHHHHHHH
Confidence 7889999999 5577889998876654
No 311
>cd03110 Fer4_NifH_child This protein family's function is unkown. It contains nucleotide binding site. It uses NTP as energy source to transfer electron or ion.
Probab=93.33 E-value=0.82 Score=33.95 Aligned_cols=74 Identities=12% Similarity=0.018 Sum_probs=50.5
Q ss_pred eeCCCchhchhhhhhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCCCCCCCHHH
Q psy15036 89 FRFPLVSRFLSLTTGLYRGTMGFLLIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQRCREVVTPD 168 (179)
Q Consensus 89 wDt~G~e~~~~~~~~~~~~~~~vilvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~~r~Vs~~e 168 (179)
.|+++... ......+..+|.++++...+ ..+...+..+++.+++.. .++.+|.||.|.... ..++
T Consensus 98 iDtpp~~~--~~~~~~l~~aD~vliv~~~~-~~~~~~~~~~~~~l~~~~---------~~~~vV~N~~~~~~~---~~~~ 162 (179)
T cd03110 98 IDGPPGIG--CPVIASLTGADAALLVTEPT-PSGLHDLERAVELVRHFG---------IPVGVVINKYDLNDE---IAEE 162 (179)
T ss_pred EECcCCCc--HHHHHHHHcCCEEEEEecCC-cccHHHHHHHHHHHHHcC---------CCEEEEEeCCCCCcc---hHHH
Confidence 89986532 23345678999999999876 457777888877776531 245678899987532 3456
Q ss_pred HHHHHhhhC
Q psy15036 169 QIMFGSTQS 177 (179)
Q Consensus 169 ~~~~a~~~~ 177 (179)
++++.++.+
T Consensus 163 ~~~~~~~~~ 171 (179)
T cd03110 163 IEDYCEEEG 171 (179)
T ss_pred HHHHHHHcC
Confidence 777776654
No 312
>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]
Probab=93.25 E-value=0.54 Score=41.06 Aligned_cols=66 Identities=15% Similarity=0.078 Sum_probs=45.5
Q ss_pred CCee----eeCCCchhchhhhhhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCC
Q psy15036 85 GPRY----FRFPLVSRFLSLTTGLYRGTMGFLLIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQR 160 (179)
Q Consensus 85 ~~~i----wDt~G~e~~~~~~~~~~~~~~~vilvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~ 160 (179)
|+.+ .||+|+..|.---...+.-+.|++||.|.+.--.-+.+.+.+..+. .+ .-+|-|-||+||..
T Consensus 73 g~~Y~lnlIDTPGHVDFsYEVSRSLAACEGalLvVDAsQGveAQTlAN~YlAle----~~------LeIiPViNKIDLP~ 142 (603)
T COG0481 73 GETYVLNLIDTPGHVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALE----NN------LEIIPVLNKIDLPA 142 (603)
T ss_pred CCEEEEEEcCCCCccceEEEehhhHhhCCCcEEEEECccchHHHHHHHHHHHHH----cC------cEEEEeeecccCCC
Confidence 4555 8999999997666667888999999999886433333333322222 22 45667789999965
No 313
>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]
Probab=93.13 E-value=0.25 Score=42.88 Aligned_cols=81 Identities=19% Similarity=0.141 Sum_probs=52.8
Q ss_pred ceeeeeEE--EEEecCCCee--eeCCCchhchhhhhhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHhCCccCcccc
Q psy15036 71 VGIVFPAI--SVTYSIGPRY--FRFPLVSRFLSLTTGLYRGTMGFLLIFDVTNENSFKDVEKWLLQIKVMDGALFTHFEL 146 (179)
Q Consensus 71 i~~~~~~k--~v~~~~~~~i--wDt~G~e~~~~~~~~~~~~~~~vilvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~ 146 (179)
-|+++..| .+.++ +..| .||+|+..|..--...++-.|+++|+.|... -.....+--++......
T Consensus 52 RGITILaKnTav~~~-~~~INIvDTPGHADFGGEVERvl~MVDgvlLlVDA~E-GpMPQTrFVlkKAl~~g--------- 120 (603)
T COG1217 52 RGITILAKNTAVNYN-GTRINIVDTPGHADFGGEVERVLSMVDGVLLLVDASE-GPMPQTRFVLKKALALG--------- 120 (603)
T ss_pred cCcEEEeccceeecC-CeEEEEecCCCcCCccchhhhhhhhcceEEEEEEccc-CCCCchhhhHHHHHHcC---------
Confidence 34444444 34455 6666 9999999998888888999999999999654 22333333333333332
Q ss_pred ceEEEEeeCCCcCCCC
Q psy15036 147 QIVFMRGCLELLQRCR 162 (179)
Q Consensus 147 ~~iilvGnK~Dl~~~r 162 (179)
.+.|+|.||.|..+-|
T Consensus 121 L~PIVVvNKiDrp~Ar 136 (603)
T COG1217 121 LKPIVVINKIDRPDAR 136 (603)
T ss_pred CCcEEEEeCCCCCCCC
Confidence 2335667999987644
No 314
>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []. Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.
Probab=93.03 E-value=0.77 Score=37.31 Aligned_cols=52 Identities=12% Similarity=-0.032 Sum_probs=28.8
Q ss_pred CCcEEEEEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCCCCCCCHHHHHHHH
Q psy15036 107 GTMGFLLIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQRCREVVTPDQIMFG 173 (179)
Q Consensus 107 ~~~~vilvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~~r~Vs~~e~~~~a 173 (179)
..|+++++.+.+.. .... .=++.+++.... ..+|=|..|+|. ++.+|...+-
T Consensus 113 RVH~cLYfI~pt~~-~L~~--~Di~~mk~Ls~~-------vNvIPvIaKaD~-----lt~~el~~~k 164 (281)
T PF00735_consen 113 RVHACLYFIPPTGH-GLKP--LDIEFMKRLSKR-------VNVIPVIAKADT-----LTPEELQAFK 164 (281)
T ss_dssp -EEEEEEEE-TTSS-SS-H--HHHHHHHHHTTT-------SEEEEEESTGGG-----S-HHHHHHHH
T ss_pred CcceEEEEEcCCCc-cchH--HHHHHHHHhccc-------ccEEeEEecccc-----cCHHHHHHHH
Confidence 47999999998753 1111 122334444443 456666789985 5666665553
No 315
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=92.74 E-value=0.29 Score=36.75 Aligned_cols=44 Identities=9% Similarity=-0.084 Sum_probs=25.9
Q ss_pred cEEEEEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCC
Q psy15036 109 MGFLLIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQR 160 (179)
Q Consensus 109 ~~vilvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~ 160 (179)
|++++|.|...+.+-.+ ..+.+.+. ....+ .|+|+|.||+||.+
T Consensus 1 DvVl~VvDar~p~~~~~-~~i~~~~~-l~~~~------kp~IlVlNK~DL~~ 44 (172)
T cd04178 1 DVILEVLDARDPLGCRC-PQVEEAVL-QAGGN------KKLVLVLNKIDLVP 44 (172)
T ss_pred CEEEEEEECCCCCCCCC-HHHHHHHH-hccCC------CCEEEEEehhhcCC
Confidence 68899999887643321 12222221 11112 37788899999954
No 316
>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]
Probab=92.68 E-value=0.64 Score=39.15 Aligned_cols=79 Identities=14% Similarity=0.036 Sum_probs=44.6
Q ss_pred eeCCCchhchhhhhhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCCCCCCCHH-
Q psy15036 89 FRFPLVSRFLSLTTGLYRGTMGFLLIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQRCREVVTP- 167 (179)
Q Consensus 89 wDt~G~e~~~~~~~~~~~~~~~vilvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~~r~Vs~~- 167 (179)
-||+|++.|..-.-.=-..||.+|+..|.- +.-.+.. +-..-|....+- .-++|.-||.||.+-.+-..+
T Consensus 91 ADTPGHeQYTRNMaTGASTadlAIlLVDAR-~Gvl~QT-rRHs~I~sLLGI-------rhvvvAVNKmDLvdy~e~~F~~ 161 (431)
T COG2895 91 ADTPGHEQYTRNMATGASTADLAILLVDAR-KGVLEQT-RRHSFIASLLGI-------RHVVVAVNKMDLVDYSEEVFEA 161 (431)
T ss_pred ecCCcHHHHhhhhhcccccccEEEEEEecc-hhhHHHh-HHHHHHHHHhCC-------cEEEEEEeeecccccCHHHHHH
Confidence 799999988432222344689999999972 2112221 111222233333 357788999999774443332
Q ss_pred ---HHHHHHhhh
Q psy15036 168 ---DQIMFGSTQ 176 (179)
Q Consensus 168 ---e~~~~a~~~ 176 (179)
+-..||++.
T Consensus 162 I~~dy~~fa~~L 173 (431)
T COG2895 162 IVADYLAFAAQL 173 (431)
T ss_pred HHHHHHHHHHHc
Confidence 344555553
No 317
>KOG0467|consensus
Probab=92.13 E-value=0.38 Score=44.01 Aligned_cols=100 Identities=13% Similarity=0.100 Sum_probs=62.8
Q ss_pred ceeEeeeccCCCcccCcceeeeeEEEEEe--cCCCee--eeCCCchhchhhhhhhhcCCcEEEEEEeCCC---hhhHHHH
Q psy15036 54 PLLKHLKYLGTGTHGKTVGIVFPAISVTY--SIGPRY--FRFPLVSRFLSLTTGLYRGTMGFLLIFDVTN---ENSFKDV 126 (179)
Q Consensus 54 G~~~~~~~~~~~~~~~Ti~~~~~~k~v~~--~~~~~i--wDt~G~e~~~~~~~~~~~~~~~vilvyDit~---~~Sf~~l 126 (179)
|.+|++.... -..|-|++-..-.+.+ . +..+ .|++|+-.|.+....-.+-+|++++..|+.. .++..-+
T Consensus 42 gkirfld~re---deq~rgitmkss~is~~~~-~~~~nlidspghvdf~sevssas~l~d~alvlvdvvegv~~qt~~vl 117 (887)
T KOG0467|consen 42 GKIRFLDTRE---DEQTRGITMKSSAISLLHK-DYLINLIDSPGHVDFSSEVSSASRLSDGALVLVDVVEGVCSQTYAVL 117 (887)
T ss_pred cceeeccccc---hhhhhceeeeccccccccC-ceEEEEecCCCccchhhhhhhhhhhcCCcEEEEeeccccchhHHHHH
Confidence 3555554332 2345555554444443 4 4444 8999999999988888899999999999764 2444444
Q ss_pred -HHHHHHHHHHhCCccCccccceEEEEeeCCCc-CCCCCCCHHHHHH
Q psy15036 127 -EKWLLQIKVMDGALFTHFELQIVFMRGCLELL-QRCREVVTPDQIM 171 (179)
Q Consensus 127 -~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl-~~~r~Vs~~e~~~ 171 (179)
+.|++. ...+||.||+|. ..+-..+..||..
T Consensus 118 rq~~~~~--------------~~~~lvinkidrl~~el~lsp~ea~~ 150 (887)
T KOG0467|consen 118 RQAWIEG--------------LKPILVINKIDRLITELKLSPQEAYE 150 (887)
T ss_pred HHHHHcc--------------CceEEEEehhhhHHHHHhcChHHHHH
Confidence 234322 345688899993 3344566666653
No 318
>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]
Probab=92.06 E-value=0.55 Score=40.55 Aligned_cols=79 Identities=10% Similarity=-0.019 Sum_probs=52.2
Q ss_pred ceeeeeEEEEEecCCCee--eeCCCchhchhhhhhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHhCCccCccccce
Q psy15036 71 VGIVFPAISVTYSIGPRY--FRFPLVSRFLSLTTGLYRGTMGFLLIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQI 148 (179)
Q Consensus 71 i~~~~~~k~v~~~~~~~i--wDt~G~e~~~~~~~~~~~~~~~vilvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~ 148 (179)
|.+.....++.+. +..+ .||+|++.|..-+-.-+--+|.+++|.|...--- .+-++.+.-..-.+ .|
T Consensus 67 ISVtsSVMqF~Y~-~~~iNLLDTPGHeDFSEDTYRtLtAvDsAvMVIDaAKGiE----~qT~KLfeVcrlR~------iP 135 (528)
T COG4108 67 ISVTSSVMQFDYA-DCLVNLLDTPGHEDFSEDTYRTLTAVDSAVMVIDAAKGIE----PQTLKLFEVCRLRD------IP 135 (528)
T ss_pred ceEEeeEEEeccC-CeEEeccCCCCccccchhHHHHHHhhheeeEEEecccCcc----HHHHHHHHHHhhcC------Cc
Confidence 3344445566677 7777 9999999998887777888999999999754211 11122222222223 57
Q ss_pred EEEEeeCCCcCC
Q psy15036 149 VFMRGCLELLQR 160 (179)
Q Consensus 149 iilvGnK~Dl~~ 160 (179)
|+-..||.|.+.
T Consensus 136 I~TFiNKlDR~~ 147 (528)
T COG4108 136 IFTFINKLDREG 147 (528)
T ss_pred eEEEeecccccc
Confidence 877789999766
No 319
>KOG3887|consensus
Probab=91.86 E-value=0.51 Score=37.82 Aligned_cols=65 Identities=9% Similarity=0.081 Sum_probs=37.4
Q ss_pred eeCCCchhchh---hhhhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCc
Q psy15036 89 FRFPLVSRFLS---LTTGLYRGTMGFLLIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELL 158 (179)
Q Consensus 89 wDt~G~e~~~~---~~~~~~~~~~~vilvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl 158 (179)
||.+||-.|.. -....|+++-++|+|.|..+. -.+.+.+....+.+...-+ +...+=+..+|.|=
T Consensus 80 ~dfPGQ~~~Fd~s~D~e~iF~~~gALifvIDaQdd-y~eala~L~~~v~raykvN----p~in~EVfiHKvDG 147 (347)
T KOG3887|consen 80 WDFPGQMDFFDPSFDYEMIFRGVGALIFVIDAQDD-YMEALARLHMTVERAYKVN----PNINFEVFIHKVDG 147 (347)
T ss_pred eecCCccccCCCccCHHHHHhccCeEEEEEechHH-HHHHHHHHHHHhhheeecC----CCceEEEEEEeccC
Confidence 99999976643 235568999999999997653 2233333333333222111 11344444688883
No 320
>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]
Probab=91.83 E-value=1.5 Score=37.54 Aligned_cols=68 Identities=12% Similarity=-0.044 Sum_probs=40.7
Q ss_pred eeCCCchhchhhhhhhhcCCcEEEEEEeCCChhh---HHH--HHHHHHHHHHHhCCccCccccceEEEEeeCCCcCCCCC
Q psy15036 89 FRFPLVSRFLSLTTGLYRGTMGFLLIFDVTNENS---FKD--VEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQRCRE 163 (179)
Q Consensus 89 wDt~G~e~~~~~~~~~~~~~~~vilvyDit~~~S---f~~--l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~~r~ 163 (179)
.|++|+..|-.-.-.-...||+.|||.|..+.+. |.- ..+-.-.+.+..+- .-+|++-||.|+.+-++
T Consensus 90 iDaPGHrdFvknmItGasqAD~aVLVV~a~~~efE~g~~~~gQtrEH~~La~tlGi-------~~lIVavNKMD~v~wde 162 (428)
T COG5256 90 IDAPGHRDFVKNMITGASQADVAVLVVDARDGEFEAGFGVGGQTREHAFLARTLGI-------KQLIVAVNKMDLVSWDE 162 (428)
T ss_pred eeCCchHHHHHHhhcchhhccEEEEEEECCCCccccccccCCchhHHHHHHHhcCC-------ceEEEEEEcccccccCH
Confidence 8999987775444445678999999999776531 211 11111122233322 24567789999976333
No 321
>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=91.44 E-value=0.28 Score=35.25 Aligned_cols=94 Identities=13% Similarity=0.016 Sum_probs=53.7
Q ss_pred EEE-EeCCCCc---eeEeeeccCCCcccCcceeeeeEEEEEecCCCeeeeCCCc----hhchhhhhhhhcCCcEEEEEEe
Q psy15036 45 GTQ-LGRRGIP---LLKHLKYLGTGTHGKTVGIVFPAISVTYSIGPRYFRFPLV----SRFLSLTTGLYRGTMGFLLIFD 116 (179)
Q Consensus 45 Kiv-lG~~gvG---~~~~~~~~~~~~~~~Ti~~~~~~k~v~~~~~~~iwDt~G~----e~~~~~~~~~~~~~~~vilvyD 116 (179)
|+. +|..|+| +.+.+.+. ..-|..|..++|..+ -..||+|. .++.........+++++++|-.
T Consensus 3 ri~~vG~~gcGKTtL~q~L~G~-~~lykKTQAve~~d~--------~~IDTPGEy~~~~~~Y~aL~tt~~dadvi~~v~~ 73 (148)
T COG4917 3 RIAFVGQVGCGKTTLFQSLYGN-DTLYKKTQAVEFNDK--------GDIDTPGEYFEHPRWYHALITTLQDADVIIYVHA 73 (148)
T ss_pred eeEEecccccCchhHHHHhhcc-hhhhcccceeeccCc--------cccCCchhhhhhhHHHHHHHHHhhccceeeeeec
Confidence 676 9999999 44444432 344566777666422 11478873 2222222334568999999999
Q ss_pred CCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCC
Q psy15036 117 VTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQR 160 (179)
Q Consensus 117 it~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~ 160 (179)
.++++|--. ..+.... . -|+|=|-+|.||.+
T Consensus 74 and~~s~f~-----p~f~~~~-~-------k~vIgvVTK~DLae 104 (148)
T COG4917 74 ANDPESRFP-----PGFLDIG-V-------KKVIGVVTKADLAE 104 (148)
T ss_pred ccCccccCC-----ccccccc-c-------cceEEEEecccccc
Confidence 988855210 0011111 1 13566679999975
No 322
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=91.31 E-value=0.28 Score=36.39 Aligned_cols=51 Identities=14% Similarity=0.150 Sum_probs=28.6
Q ss_pred eeEEE-EeCCCCc---eeEeeeccCCCcccCcceeeeeEEEEEecCCCe-eeeCCCc
Q psy15036 43 NFGTQ-LGRRGIP---LLKHLKYLGTGTHGKTVGIVFPAISVTYSIGPR-YFRFPLV 94 (179)
Q Consensus 43 ~~Kiv-lG~~gvG---~~~~~~~~~~~~~~~Ti~~~~~~k~v~~~~~~~-iwDt~G~ 94 (179)
.++++ +|.++|| ++..+.........++.+.+.....+.++ ..- +|||+|-
T Consensus 115 ~~~~~~~G~~~vGKstlin~l~~~~~~~~~~~~~~T~~~~~~~~~-~~~~~iDtpG~ 170 (171)
T cd01856 115 GIRAMVVGIPNVGKSTLINRLRGKKVAKVGNKPGVTKGIQWIKIS-PGIYLLDTPGI 170 (171)
T ss_pred CeEEEEECCCCCCHHHHHHHHhCCCceeecCCCCEEeeeEEEEec-CCEEEEECCCC
Confidence 46887 9999999 55555532211223333434444445554 332 3999983
No 323
>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another. Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....
Probab=90.95 E-value=0.45 Score=34.70 Aligned_cols=59 Identities=8% Similarity=0.006 Sum_probs=39.6
Q ss_pred eeCCCchh----chhhhhhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCC
Q psy15036 89 FRFPLVSR----FLSLTTGLYRGTMGFLLIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLE 156 (179)
Q Consensus 89 wDt~G~e~----~~~~~~~~~~~~~~vilvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~ 156 (179)
.||+|-.. ...+...|++.+|++|+|.+.++.-+-.....|.+...... ...++|-||.
T Consensus 106 vDtPG~~~~~~~~~~~~~~~~~~~d~vi~V~~~~~~~~~~~~~~l~~~~~~~~---------~~~i~V~nk~ 168 (168)
T PF00350_consen 106 VDTPGLNSTNSEHTEITEEYLPKADVVIFVVDANQDLTESDMEFLKQMLDPDK---------SRTIFVLNKA 168 (168)
T ss_dssp EEEEEBHSSHTTTSHHHHHHHSTTEEEEEEEETTSTGGGHHHHHHHHHHTTTC---------SSEEEEEE-G
T ss_pred EeCCccccchhhhHHHHHHhhccCCEEEEEeccCcccchHHHHHHHHHhcCCC---------CeEEEEEcCC
Confidence 89998643 23577888999999999999988655555455544444322 2366777874
No 324
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=90.72 E-value=0.51 Score=38.04 Aligned_cols=48 Identities=10% Similarity=-0.005 Sum_probs=31.8
Q ss_pred hhhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCC
Q psy15036 101 TTGLYRGTMGFLLIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQR 160 (179)
Q Consensus 101 ~~~~~~~~~~vilvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~ 160 (179)
.......+|++++|.|...+.+..+ .++.+.. .. .|+++|.||+||.+
T Consensus 15 ~~~~l~~aDvVl~V~Dar~p~~~~~--~~i~~~l---~~-------kp~IiVlNK~DL~~ 62 (276)
T TIGR03596 15 IKEKLKLVDVVIEVLDARIPLSSRN--PMIDEIR---GN-------KPRLIVLNKADLAD 62 (276)
T ss_pred HHHHHhhCCEEEEEEeCCCCCCCCC--hhHHHHH---CC-------CCEEEEEEccccCC
Confidence 3456789999999999977655433 1222222 22 36778899999954
No 325
>PRK01889 GTPase RsgA; Reviewed
Probab=90.20 E-value=0.63 Score=39.07 Aligned_cols=48 Identities=6% Similarity=0.048 Sum_probs=33.9
Q ss_pred hhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCC
Q psy15036 104 LYRGTMGFLLIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQR 160 (179)
Q Consensus 104 ~~~~~~~vilvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~ 160 (179)
...+.|.+++|.++...-+...+.+++..+.... .+++||-||+||.+
T Consensus 109 iaANvD~vliV~s~~p~~~~~~ldr~L~~a~~~~---------i~piIVLNK~DL~~ 156 (356)
T PRK01889 109 IAANVDTVFIVCSLNHDFNLRRIERYLALAWESG---------AEPVIVLTKADLCE 156 (356)
T ss_pred EEEeCCEEEEEEecCCCCChhHHHHHHHHHHHcC---------CCEEEEEEChhcCC
Confidence 3578899999999975555556677766665532 23356789999965
No 326
>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]
Probab=89.58 E-value=1.7 Score=35.90 Aligned_cols=71 Identities=8% Similarity=0.022 Sum_probs=42.7
Q ss_pred EEEecCCCee--eeCCCchhchhhhhhhhcCCcEEEEEEeCCC---hhhHHHHHHHHHHHHHHhCCccCccccceEEEEe
Q psy15036 79 SVTYSIGPRY--FRFPLVSRFLSLTTGLYRGTMGFLLIFDVTN---ENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRG 153 (179)
Q Consensus 79 ~v~~~~~~~i--wDt~G~e~~~~~~~~~~~~~~~vilvyDit~---~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvG 153 (179)
.+... +..+ .|++|+..|-.-.-.=--+.|+.|||.+.++ +++-+.+- +.++.+- |-+++.-
T Consensus 69 eyet~-~rhyahVDcPGHaDYvKNMItgAaqmDgAILVVsA~dGpmPqTrEHiL-----larqvGv-------p~ivvfl 135 (394)
T COG0050 69 EYETA-NRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTREHIL-----LARQVGV-------PYIVVFL 135 (394)
T ss_pred EEecC-CceEEeccCCChHHHHHHHhhhHHhcCccEEEEEcCCCCCCcchhhhh-----hhhhcCC-------cEEEEEE
Confidence 34444 5555 8999998874211112335799999998776 44444321 1222222 4666778
Q ss_pred eCCCcCCCC
Q psy15036 154 CLELLQRCR 162 (179)
Q Consensus 154 nK~Dl~~~r 162 (179)
||+|+.+.+
T Consensus 136 nK~Dmvdd~ 144 (394)
T COG0050 136 NKVDMVDDE 144 (394)
T ss_pred ecccccCcH
Confidence 999997643
No 327
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=89.40 E-value=0.41 Score=38.85 Aligned_cols=48 Identities=10% Similarity=-0.056 Sum_probs=32.0
Q ss_pred hhhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCC
Q psy15036 101 TTGLYRGTMGFLLIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQR 160 (179)
Q Consensus 101 ~~~~~~~~~~vilvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~ 160 (179)
....+..+|++++|.|...+.+.++ .++.+.. .. .|+++|.||+||.+
T Consensus 18 l~~~l~~aDvIL~VvDar~p~~~~~--~~l~~~~---~~-------kp~iiVlNK~DL~~ 65 (287)
T PRK09563 18 IKENLKLVDVVIEVLDARIPLSSEN--PMIDKII---GN-------KPRLLILNKSDLAD 65 (287)
T ss_pred HHHHhhhCCEEEEEEECCCCCCCCC--hhHHHHh---CC-------CCEEEEEEchhcCC
Confidence 3456789999999999977655332 2232222 23 36778899999954
No 328
>cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily. It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity.
Probab=88.35 E-value=2.3 Score=30.44 Aligned_cols=60 Identities=3% Similarity=-0.153 Sum_probs=40.0
Q ss_pred eeCCCchhchhhhhhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCc
Q psy15036 89 FRFPLVSRFLSLTTGLYRGTMGFLLIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELL 158 (179)
Q Consensus 89 wDt~G~e~~~~~~~~~~~~~~~vilvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl 158 (179)
.|+++.. .......+..+|.++++.+.+ ..++..+..-++.+.+.... .++.+|.|+.+-
T Consensus 50 iD~p~~~--~~~~~~~l~~aD~vviv~~~~-~~s~~~~~~~l~~l~~~~~~-------~~~~lVvN~~~~ 109 (139)
T cd02038 50 IDTGAGI--SDNVLDFFLAADEVIVVTTPE-PTSITDAYALIKKLAKQLRV-------LNFRVVVNRAES 109 (139)
T ss_pred EECCCCC--CHHHHHHHHhCCeEEEEcCCC-hhHHHHHHHHHHHHHHhcCC-------CCEEEEEeCCCC
Confidence 7887643 334456899999999999864 55676666666666544332 355677899864
No 329
>COG1163 DRG Predicted GTPase [General function prediction only]
Probab=88.19 E-value=1.3 Score=36.89 Aligned_cols=87 Identities=15% Similarity=0.120 Sum_probs=52.5
Q ss_pred eEEE-EeCCCCc---eeEeeeccCC--CcccCcceeeeeEEEEEecCCCee--eeCCCchhch-------hhhhhhhcCC
Q psy15036 44 FGTQ-LGRRGIP---LLKHLKYLGT--GTHGKTVGIVFPAISVTYSIGPRY--FRFPLVSRFL-------SLTTGLYRGT 108 (179)
Q Consensus 44 ~Kiv-lG~~gvG---~~~~~~~~~~--~~~~~Ti~~~~~~k~v~~~~~~~i--wDt~G~e~~~-------~~~~~~~~~~ 108 (179)
-.++ +|-+.|| +++.+++..+ ..|..|.-... --.+.++ |-.+ .|++|--.-. ...-...|+|
T Consensus 64 a~v~lVGfPsvGKStLL~~LTnt~seva~y~FTTl~~V-PG~l~Y~-ga~IQild~Pgii~gas~g~grG~~vlsv~R~A 141 (365)
T COG1163 64 ATVALVGFPSVGKSTLLNKLTNTKSEVADYPFTTLEPV-PGMLEYK-GAQIQLLDLPGIIEGASSGRGRGRQVLSVARNA 141 (365)
T ss_pred eEEEEEcCCCccHHHHHHHHhCCCccccccCceecccc-cceEeec-CceEEEEcCcccccCcccCCCCcceeeeeeccC
Confidence 4576 9999999 7777775432 34443321111 1234556 6666 7777532211 1123467899
Q ss_pred cEEEEEEeCCChhh-HHHHHHHHHH
Q psy15036 109 MGFLLIFDVTNENS-FKDVEKWLLQ 132 (179)
Q Consensus 109 ~~vilvyDit~~~S-f~~l~~w~~~ 132 (179)
|.+++|.|+....+ .+.+.+-++.
T Consensus 142 DlIiiVld~~~~~~~~~~i~~ELe~ 166 (365)
T COG1163 142 DLIIIVLDVFEDPHHRDIIERELED 166 (365)
T ss_pred CEEEEEEecCCChhHHHHHHHHHHh
Confidence 99999999997766 5555544444
No 330
>COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=88.04 E-value=1.9 Score=35.99 Aligned_cols=75 Identities=12% Similarity=0.110 Sum_probs=44.0
Q ss_pred eeCCCchhchhhhhhhhcC---CcEEEEEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCC-CCCC
Q psy15036 89 FRFPLVSRFLSLTTGLYRG---TMGFLLIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQR-CREV 164 (179)
Q Consensus 89 wDt~G~e~~~~~~~~~~~~---~~~vilvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~-~r~V 164 (179)
.|.+|+|-.- ...+.+ .|+++||..-+.+-.-...+.-+-.+.-..-. -+|+|-||.||.. ++..
T Consensus 91 VDaPGHe~LM---ATMLsGAAlMDgAlLvIaANEpcPQPQT~EHl~AleIigik--------~iiIvQNKIDlV~~E~Al 159 (415)
T COG5257 91 VDAPGHETLM---ATMLSGAALMDGALLVIAANEPCPQPQTREHLMALEIIGIK--------NIIIVQNKIDLVSRERAL 159 (415)
T ss_pred eeCCchHHHH---HHHhcchhhhcceEEEEecCCCCCCCchHHHHHHHhhhccc--------eEEEEecccceecHHHHH
Confidence 5999998653 233343 48899999877653333333333333322222 4678899999954 3333
Q ss_pred -CHHHHHHHHh
Q psy15036 165 -VTPDQIMFGS 174 (179)
Q Consensus 165 -s~~e~~~~a~ 174 (179)
+.+|+++|.+
T Consensus 160 E~y~qIk~Fvk 170 (415)
T COG5257 160 ENYEQIKEFVK 170 (415)
T ss_pred HHHHHHHHHhc
Confidence 3456777754
No 331
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=86.97 E-value=1.3 Score=35.77 Aligned_cols=51 Identities=14% Similarity=0.123 Sum_probs=29.3
Q ss_pred eeEEE-EeCCCCc---eeEeeeccCCCcccCcceeeeeEEEEEecCCCee-eeCCCc
Q psy15036 43 NFGTQ-LGRRGIP---LLKHLKYLGTGTHGKTVGIVFPAISVTYSIGPRY-FRFPLV 94 (179)
Q Consensus 43 ~~Kiv-lG~~gvG---~~~~~~~~~~~~~~~Ti~~~~~~k~v~~~~~~~i-wDt~G~ 94 (179)
.++++ +|.++|| +++.+.........+..|.+.....+.++ ..-. +||+|-
T Consensus 118 ~~~~~~vG~~nvGKSslin~l~~~~~~~~~~~~g~T~~~~~~~~~-~~~~l~DtPG~ 173 (276)
T TIGR03596 118 PIRAMIVGIPNVGKSTLINRLAGKKVAKVGNRPGVTKGQQWIKLS-DGLELLDTPGI 173 (276)
T ss_pred CeEEEEECCCCCCHHHHHHHHhCCCccccCCCCCeecceEEEEeC-CCEEEEECCCc
Confidence 47786 9999999 55555432211222333333334455665 4333 999997
No 332
>smart00010 small_GTPase Small GTPase of the Ras superfamily; ill-defined subfamily. SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily.
Probab=86.91 E-value=0.0041 Score=43.02 Aligned_cols=56 Identities=18% Similarity=0.222 Sum_probs=38.9
Q ss_pred EEEEeCCChhhHHHHHH-HHHHHHHHhCC-ccCccccceEEEEeeCCCcCC----CCCCCHHHHHHHHh
Q psy15036 112 LLIFDVTNENSFKDVEK-WLLQIKVMDGA-LFTHFELQIVFMRGCLELLQR----CREVVTPDQIMFGS 174 (179)
Q Consensus 112 ilvyDit~~~Sf~~l~~-w~~~i~~~~~~-~~~~~~~~~iilvGnK~Dl~~----~r~Vs~~e~~~~a~ 174 (179)
+++||+++++||+.+.. |....++.... . .++++++||.|+.. ++....+++ ++++
T Consensus 36 ~~~~~~~~~~s~~~~~~v~~~~~~~s~~~~~------~~~i~~~~k~dl~~~~~~nk~dl~~~~-~~~~ 97 (124)
T smart00010 36 IDVYDPTSYESFDVVLQCWRVDDRDSADNKN------VPEVLVGNKSDLPILVGGNRDVLEEER-QVAT 97 (124)
T ss_pred hhhccccccCCCCEEEEEEEccCHHHHHHHh------HHHHHhcCCCCCcEEEEeechhhHhhC-cCCH
Confidence 78999999999999976 87666554322 1 45678899999864 355554444 4444
No 333
>KOG1954|consensus
Probab=86.87 E-value=1.3 Score=37.63 Aligned_cols=55 Identities=9% Similarity=0.030 Sum_probs=35.3
Q ss_pred chhhhhhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCC
Q psy15036 97 FLSLTTGLYRGTMGFLLIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQR 160 (179)
Q Consensus 97 ~~~~~~~~~~~~~~vilvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~ 160 (179)
|.....+|...+|.+||+||....+-=++.+.-+..++-+.. .+-+|-||.|..+
T Consensus 171 F~~v~~WFaeR~D~IiLlfD~hKLDIsdEf~~vi~aLkG~Ed---------kiRVVLNKADqVd 225 (532)
T KOG1954|consen 171 FTGVLEWFAERVDRIILLFDAHKLDISDEFKRVIDALKGHED---------KIRVVLNKADQVD 225 (532)
T ss_pred hHHHHHHHHHhccEEEEEechhhccccHHHHHHHHHhhCCcc---------eeEEEeccccccC
Confidence 445778899999999999997665444444444444443221 3345569999543
No 334
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=86.84 E-value=0.91 Score=36.83 Aligned_cols=53 Identities=11% Similarity=0.095 Sum_probs=31.2
Q ss_pred eeeEEE-EeCCCCc---eeEeeeccCCCcccCcceeeeeEEEEEecCCCee-eeCCCch
Q psy15036 42 FNFGTQ-LGRRGIP---LLKHLKYLGTGTHGKTVGIVFPAISVTYSIGPRY-FRFPLVS 95 (179)
Q Consensus 42 ~~~Kiv-lG~~gvG---~~~~~~~~~~~~~~~Ti~~~~~~k~v~~~~~~~i-wDt~G~e 95 (179)
..++++ +|.++|| ++..+.+.......++.|.+.....+.++ +.-. +||+|--
T Consensus 120 ~~~~~~~~G~pnvGKSsliN~l~~~~~~~~~~~~g~T~~~~~~~~~-~~~~l~DtPGi~ 177 (287)
T PRK09563 120 RAIRAMIIGIPNVGKSTLINRLAGKKIAKTGNRPGVTKAQQWIKLG-KGLELLDTPGIL 177 (287)
T ss_pred CceEEEEECCCCCCHHHHHHHHhcCCccccCCCCCeEEEEEEEEeC-CcEEEEECCCcC
Confidence 357887 9999999 55555433222223344444444455555 4433 9999973
No 335
>KOG3929|consensus
Probab=86.15 E-value=3.1 Score=33.78 Aligned_cols=79 Identities=14% Similarity=0.191 Sum_probs=44.8
Q ss_pred eeEEE-EeCCCCc-eeEeeeccCCCcccCcceeeeeEEEEEecCCCe---e---eeCCCchhchhhhhhhhc----CCcE
Q psy15036 43 NFGTQ-LGRRGIP-LLKHLKYLGTGTHGKTVGIVFPAISVTYSIGPR---Y---FRFPLVSRFLSLTTGLYR----GTMG 110 (179)
Q Consensus 43 ~~Kiv-lG~~gvG-~~~~~~~~~~~~~~~Ti~~~~~~k~v~~~~~~~---i---wDt~G~e~~~~~~~~~~~----~~~~ 110 (179)
.+-|+ .|+.++- ++............||...++.- --... +.. + |..+|...-..+..-=++ ..-.
T Consensus 45 E~~I~~~Gn~~~tt~I~~~FdR~e~~~~ptlaLEYty-gRR~~-g~~~kdiaN~WELGgg~~~~~LLsVPit~~~l~~~s 122 (363)
T KOG3929|consen 45 EFFIGSKGNGGKTTIILRCFDRDEPPKPPTLALEYTY-GRRAK-GHNPKDIANFWELGGGTSLLDLLSVPITGDTLRTFS 122 (363)
T ss_pred eeEEEEecCCceeEeehhhcCcccCCCCCceeeeeeh-hhhcc-CCCchhHHHHHHhcCCccHHHHhcCcccccchhhhh
Confidence 45566 8988887 33333333344456677666531 11223 332 2 998887655443322111 2456
Q ss_pred EEEEEeCCChhhH
Q psy15036 111 FLLIFDVTNENSF 123 (179)
Q Consensus 111 vilvyDit~~~Sf 123 (179)
+||+.|+++++-|
T Consensus 123 lIL~LDls~p~~~ 135 (363)
T KOG3929|consen 123 LILVLDLSKPNDL 135 (363)
T ss_pred heeeeecCChHHH
Confidence 7899999999665
No 336
>PF11111 CENP-M: Centromere protein M (CENP-M); InterPro: IPR020987 The prime candidate for specifying centromere identity is the array of nucleosomes assembles associated with CENP-A []. CENP-A recruits a nucleosome associated complex (CENP-A-NAC complex) comprised of CENP-M which this entry represents, along with two other proteins []. Assembly of the CENP-A NAC at centromeres is partly dependent on CENP-M. The CENP-A NAC is essential, as disruption of the complex causes errors of chromosome alignment and segregation that preclude cell survival [].
Probab=85.70 E-value=4.2 Score=30.74 Aligned_cols=66 Identities=12% Similarity=-0.022 Sum_probs=48.0
Q ss_pred cCCcEEEEEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCCCCCCCHHHHHHHHhhhCC
Q psy15036 106 RGTMGFLLIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQRCREVVTPDQIMFGSTQSS 178 (179)
Q Consensus 106 ~~~~~vilvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~~r~Vs~~e~~~~a~~~~~ 178 (179)
...|-|+++.|++++-|++.++.=+..+....... .+.++++-...++.-.|+.++..++|.+.-+
T Consensus 63 prIDlIVFvinl~sk~SL~~ve~SL~~vd~~fflG-------KVCfl~t~a~~~~~~sv~~~~V~kla~~y~~ 128 (176)
T PF11111_consen 63 PRIDLIVFVINLHSKYSLQSVEASLSHVDPSFFLG-------KVCFLATNAGRESHCSVHPNEVRKLAATYNS 128 (176)
T ss_pred ceeEEEEEEEecCCcccHHHHHHHHhhCChhhhcc-------ceEEEEcCCCcccccccCHHHHHHHHHHhCC
Confidence 35799999999999999999887766665333222 3444555555566678999999999987543
No 337
>PTZ00258 GTP-binding protein; Provisional
Probab=85.09 E-value=3.9 Score=34.91 Aligned_cols=30 Identities=10% Similarity=0.006 Sum_probs=19.8
Q ss_pred eeCCCchhc----hhhhhh---hhcCCcEEEEEEeCC
Q psy15036 89 FRFPLVSRF----LSLTTG---LYRGTMGFLLIFDVT 118 (179)
Q Consensus 89 wDt~G~e~~----~~~~~~---~~~~~~~vilvyDit 118 (179)
.|++|-.+- ..+... .++++|++++|.|..
T Consensus 90 vDtpGLv~ga~~g~gLg~~fL~~Ir~aD~il~VVd~f 126 (390)
T PTZ00258 90 TDIAGLVKGASEGEGLGNAFLSHIRAVDGIYHVVRAF 126 (390)
T ss_pred EECCCcCcCCcchhHHHHHHHHHHHHCCEEEEEEeCC
Confidence 899995321 122223 356799999999963
No 338
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=84.26 E-value=1.5 Score=31.85 Aligned_cols=50 Identities=12% Similarity=0.090 Sum_probs=26.3
Q ss_pred eeEEE-EeCCCCc---eeEeeeccCCCcccCcceeeeeEEEEEecCCCee-eeCCC
Q psy15036 43 NFGTQ-LGRRGIP---LLKHLKYLGTGTHGKTVGIVFPAISVTYSIGPRY-FRFPL 93 (179)
Q Consensus 43 ~~Kiv-lG~~gvG---~~~~~~~~~~~~~~~Ti~~~~~~k~v~~~~~~~i-wDt~G 93 (179)
...|. +|.+||| ++..+.........++-|.......+.++ +..+ .||+|
T Consensus 102 ~~~v~~~G~~nvGKStliN~l~~~~~~~~~~~~g~T~~~~~~~~~-~~~~liDtPG 156 (157)
T cd01858 102 QISVGFIGYPNVGKSSIINTLRSKKVCKVAPIPGETKVWQYITLM-KRIYLIDCPG 156 (157)
T ss_pred ceEEEEEeCCCCChHHHHHHHhcCCceeeCCCCCeeEeEEEEEcC-CCEEEEECcC
Confidence 45675 9999999 55555432222223333332222333444 3333 89988
No 339
>KOG1490|consensus
Probab=83.99 E-value=6.1 Score=34.93 Aligned_cols=54 Identities=13% Similarity=0.030 Sum_probs=37.8
Q ss_pred CcEEEEEEeCCChh--hHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCCCCCCCHHH
Q psy15036 108 TMGFLLIFDVTNEN--SFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQRCREVVTPD 168 (179)
Q Consensus 108 ~~~vilvyDit~~~--Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~~r~Vs~~e 168 (179)
-.+|+++-|++..- |...--+.+..|+....++ |.|+|.||+|+-.--.++.+.
T Consensus 248 raaVLYfmDLSe~CGySva~QvkLfhsIKpLFaNK-------~~IlvlNK~D~m~~edL~~~~ 303 (620)
T KOG1490|consen 248 RSAVLYFMDLSEMCGYSVAAQVKLYHSIKPLFANK-------VTILVLNKIDAMRPEDLDQKN 303 (620)
T ss_pred hhhheeeeechhhhCCCHHHHHHHHHHhHHHhcCC-------ceEEEeecccccCccccCHHH
Confidence 35677888998763 4444456777777777665 778889999997655566554
No 340
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=83.93 E-value=7 Score=31.03 Aligned_cols=63 Identities=11% Similarity=-0.028 Sum_probs=35.7
Q ss_pred eeCCCchh-------------chhhhhhhhcCC-cEEEEEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEee
Q psy15036 89 FRFPLVSR-------------FLSLTTGLYRGT-MGFLLIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGC 154 (179)
Q Consensus 89 wDt~G~e~-------------~~~~~~~~~~~~-~~vilvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGn 154 (179)
.|++|-.. ...+...|+++. +.+++|.|.+.--+=.. .++.++...+.. .++++|.|
T Consensus 130 IDlPGl~~~~~~~~~~~~~~~i~~lv~~yi~~~~~IIL~Vvda~~d~~~~d---~l~ia~~ld~~~------~rti~ViT 200 (240)
T smart00053 130 IDLPGITKVAVGDQPPDIEEQIKDMIKQFISKEECLILAVTPANVDLANSD---ALKLAKEVDPQG------ERTIGVIT 200 (240)
T ss_pred EeCCCccccccCCccHHHHHHHHHHHHHHHhCccCeEEEEEECCCCCCchh---HHHHHHHHHHcC------CcEEEEEE
Confidence 78888642 234667788854 47777777543211111 122222222232 47788999
Q ss_pred CCCcCC
Q psy15036 155 LELLQR 160 (179)
Q Consensus 155 K~Dl~~ 160 (179)
|+|..+
T Consensus 201 K~D~~~ 206 (240)
T smart00053 201 KLDLMD 206 (240)
T ss_pred CCCCCC
Confidence 999865
No 341
>KOG0458|consensus
Probab=83.38 E-value=9.5 Score=34.16 Aligned_cols=63 Identities=11% Similarity=0.072 Sum_probs=38.0
Q ss_pred eeCCCchhchhhhhhhhcCCcEEEEEEeCCChhhHHH-------HHHHHHHHHHHhCCccCccccceEEEEeeCCCcCC
Q psy15036 89 FRFPLVSRFLSLTTGLYRGTMGFLLIFDVTNENSFKD-------VEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQR 160 (179)
Q Consensus 89 wDt~G~e~~~~~~~~~~~~~~~vilvyDit~~~Sf~~-------l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~ 160 (179)
.|.+|+..|-.-.-.=...+|+.+||.|.+ ...|+. ++.-...++... - --+|++-||.|+.+
T Consensus 260 iDaPGhkdFi~nmi~g~sqaD~avLvvd~s-~~~FE~gfd~~gQtrEha~llr~Lg-i-------~qlivaiNKmD~V~ 329 (603)
T KOG0458|consen 260 IDAPGHKDFIPNMISGASQADVAVLVVDAS-TGEFESGFDPGGQTREHALLLRSLG-I-------SQLIVAINKMDLVS 329 (603)
T ss_pred ecCCCccccchhhhccccccceEEEEEECC-cchhhhccCCCCchHHHHHHHHHcC-c-------ceEEEEeecccccC
Confidence 899998877543333455789999999965 344433 122222222222 2 24567789999854
No 342
>KOG1424|consensus
Probab=83.33 E-value=2.5 Score=37.25 Aligned_cols=46 Identities=13% Similarity=0.083 Sum_probs=30.8
Q ss_pred hcCCcEEEEEEeCCChhhHHH--HHHHHHHHHHHhCCccCccccceEEEEeeCCCcCC
Q psy15036 105 YRGTMGFLLIFDVTNENSFKD--VEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQR 160 (179)
Q Consensus 105 ~~~~~~vilvyDit~~~Sf~~--l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~ 160 (179)
+..+|+||.+.|.-|+--|.. |..+++++. +.+ ..+|+-||.||..
T Consensus 172 lErSDivvqIVDARnPllfr~~dLe~Yvke~d---~~K-------~~~LLvNKaDLl~ 219 (562)
T KOG1424|consen 172 LERSDIVVQIVDARNPLLFRSPDLEDYVKEVD---PSK-------ANVLLVNKADLLP 219 (562)
T ss_pred HhhcceEEEEeecCCccccCChhHHHHHhccc---ccc-------ceEEEEehhhcCC
Confidence 457999999999999966644 344444433 222 3456679999954
No 343
>COG3523 IcmF Type VI protein secretion system component VasK [Intracellular trafficking, secretion, and vesicular transport]
Probab=82.61 E-value=4.7 Score=39.15 Aligned_cols=49 Identities=16% Similarity=0.117 Sum_probs=32.5
Q ss_pred cCCcEEEEEEeCCCh----hhH-----HHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCC
Q psy15036 106 RGTMGFLLIFDVTNE----NSF-----KDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQR 160 (179)
Q Consensus 106 ~~~~~vilvyDit~~----~Sf-----~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~ 160 (179)
+..||||+..|+.+. ... ..|..=+.++++.-.-. .|+.|+.||.|+-.
T Consensus 213 ~piNGiiltlsv~~L~~~~~~~~~~~~~~LR~RL~El~~tL~~~------~PVYl~lTk~Dll~ 270 (1188)
T COG3523 213 RPLNGIILTLSVSDLLTADPAEREALARTLRARLQELRETLHAR------LPVYLVLTKADLLP 270 (1188)
T ss_pred CCCceEEEEEEHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhccC------CceEEEEecccccc
Confidence 458999999986553 112 12344455666555554 78999999999843
No 344
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=82.09 E-value=1.7 Score=32.60 Aligned_cols=50 Identities=18% Similarity=0.162 Sum_probs=28.6
Q ss_pred eeEEE-EeCCCCc---eeEeeeccCCCcccCcceeeeeEEEEEecCCCee-eeCCC
Q psy15036 43 NFGTQ-LGRRGIP---LLKHLKYLGTGTHGKTVGIVFPAISVTYSIGPRY-FRFPL 93 (179)
Q Consensus 43 ~~Kiv-lG~~gvG---~~~~~~~~~~~~~~~Ti~~~~~~k~v~~~~~~~i-wDt~G 93 (179)
.++++ +|.++|| ++..+.+.......+..|.+.....+.++ ..-. .||+|
T Consensus 117 ~~~~~~vG~pnvGKSslin~l~~~~~~~~~~~pg~T~~~~~~~~~-~~~~l~DtPG 171 (172)
T cd04178 117 SITVGVVGFPNVGKSSLINSLKRSRACNVGATPGVTKSMQEVHLD-KKVKLLDSPG 171 (172)
T ss_pred CcEEEEEcCCCCCHHHHHHHHhCcccceecCCCCeEcceEEEEeC-CCEEEEECcC
Confidence 47886 9999999 55555543222233333433333444555 4333 89988
No 345
>COG1161 Predicted GTPases [General function prediction only]
Probab=81.16 E-value=1.7 Score=36.05 Aligned_cols=60 Identities=3% Similarity=-0.089 Sum_probs=42.6
Q ss_pred eeCCCchhchhhhhhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCC
Q psy15036 89 FRFPLVSRFLSLTTGLYRGTMGFLLIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQR 160 (179)
Q Consensus 89 wDt~G~e~~~~~~~~~~~~~~~vilvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~ 160 (179)
|=.....++...........|.++-|.|.-++.+..+ ..+.+....+ +.++|.||+||..
T Consensus 16 ~~~g~~~k~~~~~~~~~~~~d~vvevvDar~P~~s~~-----~~l~~~v~~k-------~~i~vlNK~DL~~ 75 (322)
T COG1161 16 WFPGHMKKAKRQLKEVLKSVDVVVEVVDARDPLGTRN-----PELERIVKEK-------PKLLVLNKADLAP 75 (322)
T ss_pred CCCCchHHHHHHHHHhcccCCEEEEEEeccccccccC-----ccHHHHHccC-------CcEEEEehhhcCC
Confidence 4433345666677778999999999999999877554 3344444443 4478899999965
No 346
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=79.40 E-value=3.5 Score=31.60 Aligned_cols=39 Identities=13% Similarity=-0.055 Sum_probs=24.3
Q ss_pred CcEEEEEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCC
Q psy15036 108 TMGFLLIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQR 160 (179)
Q Consensus 108 ~~~vilvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~ 160 (179)
++.+|.|+|.++-++... .+..++ ... =+++.||+|+.+
T Consensus 113 ~~~~i~vvD~~~~~~~~~--~~~~qi---~~a---------d~~~~~k~d~~~ 151 (199)
T TIGR00101 113 ADLTIFVIDVAAGDKIPR--KGGPGI---TRS---------DLLVINKIDLAP 151 (199)
T ss_pred hCcEEEEEEcchhhhhhh--hhHhHh---hhc---------cEEEEEhhhccc
Confidence 688999999997766322 111111 111 157789999974
No 347
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=77.27 E-value=7.7 Score=30.94 Aligned_cols=56 Identities=13% Similarity=0.124 Sum_probs=38.5
Q ss_pred CCchhchhhhhhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcC
Q psy15036 92 PLVSRFLSLTTGLYRGTMGFLLIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQ 159 (179)
Q Consensus 92 ~G~e~~~~~~~~~~~~~~~vilvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~ 159 (179)
+|-|.| .+.-.+++|.+|+|.|.+. +|+...++..+...+.. - -++.+|.||.|-.
T Consensus 143 AGiEHf---gRg~~~~vD~vivVvDpS~-~sl~taeri~~L~~elg-~-------k~i~~V~NKv~e~ 198 (255)
T COG3640 143 AGIEHF---GRGTIEGVDLVIVVVDPSY-KSLRTAERIKELAEELG-I-------KRIFVVLNKVDEE 198 (255)
T ss_pred cchhhh---ccccccCCCEEEEEeCCcH-HHHHHHHHHHHHHHHhC-C-------ceEEEEEeeccch
Confidence 566655 4556789999999999754 46666665555544443 1 2678889999854
No 348
>COG5400 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=76.94 E-value=6.6 Score=29.52 Aligned_cols=59 Identities=19% Similarity=0.341 Sum_probs=33.5
Q ss_pred EEEeCCCCc-eeEeeeccCCCcccCcceeeeeEEEEEecCCCee-eeCCCchhchhhhhhhhcCCcEEEEEEeCCChh
Q psy15036 46 TQLGRRGIP-LLKHLKYLGTGTHGKTVGIVFPAISVTYSIGPRY-FRFPLVSRFLSLTTGLYRGTMGFLLIFDVTNEN 121 (179)
Q Consensus 46 ivlG~~gvG-~~~~~~~~~~~~~~~Ti~~~~~~k~v~~~~~~~i-wDt~G~e~~~~~~~~~~~~~~~vilvyDit~~~ 121 (179)
.++|++|+| ++.-+..-...-|....+ +. .+-.+ +-.+ ||..||. +-+..|||++.+.+
T Consensus 85 YilGeEGSGAfIaGltYGeG~LytKn~g-~h---~vFWQ-GPslGwD~GGqg------------sRvmmLvYnL~~v~ 145 (205)
T COG5400 85 YILGEEGSGAFIAGLTYGEGTLYTKNAG-DH---KVFWQ-GPSLGWDWGGQG------------SRVMMLVYNLDDVD 145 (205)
T ss_pred eEeccccccceEeeeeeccceEEecCCC-Cc---ceEee-CCccccccCCCc------------eEEEEEEecCCCHH
Confidence 568999999 554444221122222222 11 12223 5555 9999874 36788999997654
No 349
>KOG0099|consensus
Probab=75.56 E-value=11 Score=30.70 Aligned_cols=79 Identities=8% Similarity=-0.025 Sum_probs=46.5
Q ss_pred EEEecCCCee--eeCCCchhchhhhhhhhcCCcEEEEEEeCCCh-------hhHHHHHHHHHHHHHHhCCccCccccceE
Q psy15036 79 SVTYSIGPRY--FRFPLVSRFLSLTTGLYRGTMGFLLIFDVTNE-------NSFKDVEKWLLQIKVMDGALFTHFELQIV 149 (179)
Q Consensus 79 ~v~~~~~~~i--wDt~G~e~~~~~~~~~~~~~~~vilvyDit~~-------~Sf~~l~~w~~~i~~~~~~~~~~~~~~~i 149 (179)
.++++ --.+ +|.+||..-+.-+-..|.+..++|+|...++- .+-+.++.-++.++..-.+..- ...-+
T Consensus 196 ~FqVd-kv~FhMfDVGGQRDeRrKWIQcFndvtAiifv~acSsyn~vlrED~~qNRL~EaL~LFksiWnNRwL--~tisv 272 (379)
T KOG0099|consen 196 KFQVD-KVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVACSSYNMVLREDNQQNRLQEALNLFKSIWNNRWL--RTISV 272 (379)
T ss_pred EEecc-ccceeeeccCCchhhhhhHHHHhcCccEEEEEEeccchhhhhhcCCchhHHHHHHHHHHHHHhhhHH--hhhhe
Confidence 34444 3334 99999988888888899999999998765432 2333344333333322111000 00345
Q ss_pred EEEeeCCCcCC
Q psy15036 150 FMRGCLELLQR 160 (179)
Q Consensus 150 ilvGnK~Dl~~ 160 (179)
||.-||-||-.
T Consensus 273 IlFLNKqDlla 283 (379)
T KOG0099|consen 273 ILFLNKQDLLA 283 (379)
T ss_pred eEEecHHHHHH
Confidence 66679999843
No 350
>KOG0464|consensus
Probab=75.29 E-value=1.4 Score=37.98 Aligned_cols=70 Identities=14% Similarity=0.061 Sum_probs=47.0
Q ss_pred EEEEecCCCee--eeCCCchhchhhhhhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeC
Q psy15036 78 ISVTYSIGPRY--FRFPLVSRFLSLTTGLYRGTMGFLLIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCL 155 (179)
Q Consensus 78 k~v~~~~~~~i--wDt~G~e~~~~~~~~~~~~~~~vilvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK 155 (179)
..+... |.++ .||+|+..|+--...+.|--||++.|||-+---.-+.+.-|.+. ..-+ .|-+...||
T Consensus 95 v~fdwk-g~rinlidtpghvdf~leverclrvldgavav~dasagve~qtltvwrqa----dk~~------ip~~~fink 163 (753)
T KOG0464|consen 95 VNFDWK-GHRINLIDTPGHVDFRLEVERCLRVLDGAVAVFDASAGVEAQTLTVWRQA----DKFK------IPAHCFINK 163 (753)
T ss_pred eecccc-cceEeeecCCCcceEEEEHHHHHHHhcCeEEEEeccCCcccceeeeehhc----cccC------Cchhhhhhh
Confidence 344456 7777 99999999998888899999999999997654333344456322 1112 333344688
Q ss_pred CCc
Q psy15036 156 ELL 158 (179)
Q Consensus 156 ~Dl 158 (179)
.|.
T Consensus 164 mdk 166 (753)
T KOG0464|consen 164 MDK 166 (753)
T ss_pred hhh
Confidence 885
No 351
>cd03111 CpaE_like This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster. The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome.
Probab=74.47 E-value=17 Score=24.63 Aligned_cols=58 Identities=9% Similarity=0.056 Sum_probs=40.1
Q ss_pred eeCCCchhchhhhhhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHhCC-ccCccccceEEEEeeC
Q psy15036 89 FRFPLVSRFLSLTTGLYRGTMGFLLIFDVTNENSFKDVEKWLLQIKVMDGA-LFTHFELQIVFMRGCL 155 (179)
Q Consensus 89 wDt~G~e~~~~~~~~~~~~~~~vilvyDit~~~Sf~~l~~w~~~i~~~~~~-~~~~~~~~~iilvGnK 155 (179)
.|+++... ......+..+|.++++.+ .+..|...+..+++.+++.... . ..+.+|.|+
T Consensus 48 iDtpp~~~--~~~~~~l~~aD~vlvvv~-~~~~s~~~~~~~~~~l~~~~~~~~------~~~~lVvNr 106 (106)
T cd03111 48 VDLGRSLD--EVSLAALDQADRVFLVTQ-QDLPSIRNAKRLLELLRVLDYSLP------AKIELVLNR 106 (106)
T ss_pred EeCCCCcC--HHHHHHHHHcCeEEEEec-CChHHHHHHHHHHHHHHHcCCCCc------CceEEEecC
Confidence 78887543 234457788999999887 4567888888888888776533 1 245566664
No 352
>PRK09601 GTP-binding protein YchF; Reviewed
Probab=73.61 E-value=17 Score=30.79 Aligned_cols=30 Identities=7% Similarity=-0.061 Sum_probs=19.8
Q ss_pred eeCCCchhc----hhhhhh---hhcCCcEEEEEEeCC
Q psy15036 89 FRFPLVSRF----LSLTTG---LYRGTMGFLLIFDVT 118 (179)
Q Consensus 89 wDt~G~e~~----~~~~~~---~~~~~~~vilvyDit 118 (179)
.|++|-.+- ..+... .++++|+++.|.|..
T Consensus 71 vD~pGL~~~a~~g~glg~~fL~~i~~aD~li~VVd~f 107 (364)
T PRK09601 71 VDIAGLVKGASKGEGLGNQFLANIREVDAIVHVVRCF 107 (364)
T ss_pred EECCCCCCCCChHHHHHHHHHHHHHhCCEEEEEEeCC
Confidence 899995321 122223 357899999999973
No 353
>PF14331 ImcF-related_N: ImcF-related N-terminal domain
Probab=73.40 E-value=7.1 Score=31.39 Aligned_cols=47 Identities=15% Similarity=0.073 Sum_probs=29.7
Q ss_pred CCcEEEEEEeCCChh-------hHHH----HHHHHHHHHHHhCCccCccccceEEEEeeCCCcC
Q psy15036 107 GTMGFLLIFDVTNEN-------SFKD----VEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQ 159 (179)
Q Consensus 107 ~~~~vilvyDit~~~-------Sf~~----l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~ 159 (179)
-.+|+|++.|+.+-- .+.. +..-+.++.+..+-. .||.||-+|+|+-
T Consensus 25 PlnGvil~vs~~~Ll~~~~~~r~l~~~a~~lR~rL~el~~~lg~~------~PVYvv~Tk~D~l 82 (266)
T PF14331_consen 25 PLNGVILTVSVDDLLNADEAERELEALARALRQRLEELQRTLGVR------LPVYVVFTKCDLL 82 (266)
T ss_pred CCCEEEEEEEHHHHhcCChhhhHHHHHHHHHHHHHHHHHHHhCCC------CCeEeeeECCCcc
Confidence 469999999876431 1222 233344444444444 7899999999984
No 354
>COG4963 CpaE Flp pilus assembly protein, ATPase CpaE [Intracellular trafficking and secretion]
Probab=73.13 E-value=12 Score=31.66 Aligned_cols=61 Identities=10% Similarity=0.099 Sum_probs=47.8
Q ss_pred eeCCCchhchhhhhhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCc
Q psy15036 89 FRFPLVSRFLSLTTGLYRGTMGFLLIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELL 158 (179)
Q Consensus 89 wDt~G~e~~~~~~~~~~~~~~~vilvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl 158 (179)
.|.+ + -....+..++.++|.+++|.+.+ --|..+.++.++.+++..++. +++.+|-||.+.
T Consensus 223 ~Dlp-~-~~~~~t~~vL~~Sd~iviv~e~s-l~slR~ak~lld~l~~~r~~~------~~p~lv~n~~~~ 283 (366)
T COG4963 223 VDLP-N-IWTDWTRQVLSGSDEIVIVAEPS-LASLRNAKELLDELKRLRPND------PKPILVLNRVGV 283 (366)
T ss_pred EcCC-C-ccchHHHHHHhcCCeEEEEeccc-HHHHHHHHHHHHHHHHhCCCC------CCceEEeeecCC
Confidence 5655 2 22346677899999999999864 558888899999999998887 677788899865
No 355
>KOG1547|consensus
Probab=72.93 E-value=49 Score=26.80 Aligned_cols=13 Identities=31% Similarity=0.833 Sum_probs=11.4
Q ss_pred eeeEEE-EeCCCCc
Q psy15036 42 FNFGTQ-LGRRGIP 54 (179)
Q Consensus 42 ~~~Kiv-lG~~gvG 54 (179)
+.|.|+ +|.+|.|
T Consensus 45 F~FNIMVVgqSglg 58 (336)
T KOG1547|consen 45 FDFNIMVVGQSGLG 58 (336)
T ss_pred CceEEEEEecCCCC
Confidence 568886 9999999
No 356
>cd01851 GBP Guanylate-binding protein (GBP), N-terminal domain. Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein
Probab=71.74 E-value=45 Score=25.90 Aligned_cols=90 Identities=12% Similarity=-0.025 Sum_probs=45.9
Q ss_pred eeeEEE--EeCCCCc---eeEeeecc------CCCcccCcceeeeeEEEEEecCCCee--eeCCCchhchh------hhh
Q psy15036 42 FNFGTQ--LGRRGIP---LLKHLKYL------GTGTHGKTVGIVFPAISVTYSIGPRY--FRFPLVSRFLS------LTT 102 (179)
Q Consensus 42 ~~~Kiv--lG~~gvG---~~~~~~~~------~~~~~~~Ti~~~~~~k~v~~~~~~~i--wDt~G~e~~~~------~~~ 102 (179)
..+++| +|..++| +++.+.+. .......|.|+......+....+..+ .||.|-..... ..-
T Consensus 5 ~~v~vvsv~G~~~sGKS~llN~l~~~~~~f~~~~~~~~~T~gi~~~~~~~~~~~~~~v~~lDteG~~~~~~~~~~~~~~~ 84 (224)
T cd01851 5 FPVAVVSVFGPQSSGKSFLLNHLFGTLSGFDVMDTSQQTTKGIWMWSVPFKLGKEHAVLLLDTEGTDGRERGEFEDDARL 84 (224)
T ss_pred CCEEEEEEECCCCCCHHHHHHHHhCCCCCeEecCCCCCCccceEEEeccccCCCcceEEEEecCCcCccccCchhhhhHH
Confidence 456675 9999999 55444432 23334567776554433322113444 89998653211 111
Q ss_pred hhhcC--CcEEEEEEeCCC-hhhHHHHHHHHH
Q psy15036 103 GLYRG--TMGFLLIFDVTN-ENSFKDVEKWLL 131 (179)
Q Consensus 103 ~~~~~--~~~vilvyDit~-~~Sf~~l~~w~~ 131 (179)
..+.. ++++|+..+-+. .+..+.+....+
T Consensus 85 ~~l~~llss~~i~n~~~~~~~~~~~~l~~~~~ 116 (224)
T cd01851 85 FALATLLSSVLIYNSWETILGDDLAALMGLLK 116 (224)
T ss_pred HHHHHHHhCEEEEeccCcccHHHHHHHHHHHH
Confidence 12222 677776555443 334444444433
No 357
>cd01900 YchF YchF subfamily. YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.
Probab=71.67 E-value=13 Score=30.09 Aligned_cols=29 Identities=7% Similarity=-0.016 Sum_probs=19.1
Q ss_pred eeCCCchhc----hhhhhhh---hcCCcEEEEEEeC
Q psy15036 89 FRFPLVSRF----LSLTTGL---YRGTMGFLLIFDV 117 (179)
Q Consensus 89 wDt~G~e~~----~~~~~~~---~~~~~~vilvyDi 117 (179)
.|++|-.+- ..+...| .+++|+++.|.|.
T Consensus 67 vD~pGl~~~a~~~~glg~~fL~~i~~~D~li~VV~~ 102 (274)
T cd01900 67 VDIAGLVKGASKGEGLGNKFLSHIREVDAIAHVVRC 102 (274)
T ss_pred EECCCcCCCCchhhHHHHHHHHHHHhCCEEEEEEeC
Confidence 899994321 1232333 5679999999975
No 358
>KOG0460|consensus
Probab=69.74 E-value=16 Score=30.90 Aligned_cols=76 Identities=13% Similarity=-0.021 Sum_probs=42.7
Q ss_pred eeCCCchhchhhhhhhhcCCcEEEEEEeCCCh---hhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCCC---C
Q psy15036 89 FRFPLVSRFLSLTTGLYRGTMGFLLIFDVTNE---NSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQRC---R 162 (179)
Q Consensus 89 wDt~G~e~~~~~~~~~~~~~~~vilvyDit~~---~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~~---r 162 (179)
-|++|+..|-.-.-.=-..-|+.|||..-+|- ++=+. +-..++..-. -+++.-||.|+.+. .
T Consensus 122 ~DCPGHADYIKNMItGaaqMDGaILVVaatDG~MPQTrEH----lLLArQVGV~--------~ivvfiNKvD~V~d~e~l 189 (449)
T KOG0460|consen 122 TDCPGHADYIKNMITGAAQMDGAILVVAATDGPMPQTREH----LLLARQVGVK--------HIVVFINKVDLVDDPEML 189 (449)
T ss_pred CCCCchHHHHHHhhcCccccCceEEEEEcCCCCCcchHHH----HHHHHHcCCc--------eEEEEEecccccCCHHHH
Confidence 89999988732111112246999999988873 44333 2233444333 34555799998632 2
Q ss_pred CCCHHHHHHHHhhh
Q psy15036 163 EVVTPDQIMFGSTQ 176 (179)
Q Consensus 163 ~Vs~~e~~~~a~~~ 176 (179)
++-+-|.+++-++.
T Consensus 190 eLVEmE~RElLse~ 203 (449)
T KOG0460|consen 190 ELVEMEIRELLSEF 203 (449)
T ss_pred HHHHHHHHHHHHHc
Confidence 23344555555443
No 359
>cd02036 MinD Bacterial cell division requires the formation of a septum at mid-cell. The site is determined by the min operon products MinC, MinD and MinE. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal role, selecting the mid-cell over other sites through the activation and regulation of MinC and MinE. MinD is a membrane-associated ATPase, related to nitrogenase iron protein. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. MinD is a monomer.
Probab=69.68 E-value=39 Score=24.40 Aligned_cols=60 Identities=10% Similarity=-0.078 Sum_probs=40.5
Q ss_pred eeCCCchhchhhhhhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcC
Q psy15036 89 FRFPLVSRFLSLTTGLYRGTMGFLLIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQ 159 (179)
Q Consensus 89 wDt~G~e~~~~~~~~~~~~~~~vilvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~ 159 (179)
.|+++.... .....+..+|.+|++.+.+ ..++..+..+++.+.+.. . ....+|.|+.+-.
T Consensus 68 iD~p~~~~~--~~~~~l~~ad~viiv~~~~-~~s~~~~~~~~~~~~~~~-~-------~~~~iv~N~~~~~ 127 (179)
T cd02036 68 IDSPAGIER--GFITAIAPADEALLVTTPE-ISSLRDADRVKGLLEALG-I-------KVVGVIVNRVRPD 127 (179)
T ss_pred EECCCCCcH--HHHHHHHhCCcEEEEeCCC-cchHHHHHHHHHHHHHcC-C-------ceEEEEEeCCccc
Confidence 899875433 3344568899999998764 457777777777766522 1 3456778998764
No 360
>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]
Probab=68.67 E-value=67 Score=27.29 Aligned_cols=54 Identities=15% Similarity=0.200 Sum_probs=29.9
Q ss_pred eeeEEE-EeCCCCc---eeEeee-----ccC------CCcccCcceeeeeEEEEEecCCCee----eeCCCchh
Q psy15036 42 FNFGTQ-LGRRGIP---LLKHLK-----YLG------TGTHGKTVGIVFPAISVTYSIGPRY----FRFPLVSR 96 (179)
Q Consensus 42 ~~~Kiv-lG~~gvG---~~~~~~-----~~~------~~~~~~Ti~~~~~~k~v~~~~~~~i----wDt~G~e~ 96 (179)
..|.|+ +|.+|.| ++.-+. ... .....+|+.+......+.-+ +..+ .||+|-..
T Consensus 22 i~f~im~~G~sG~GKttfiNtL~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~-~~~~~l~vIDtpGfGD 94 (373)
T COG5019 22 IDFTIMVVGESGLGKTTFINTLFGTSLVDETEIDDIRAEGTSPTLEIKITKAELEED-GFHLNLTVIDTPGFGD 94 (373)
T ss_pred CceEEEEecCCCCchhHHHHhhhHhhccCCCCccCcccccCCcceEEEeeeeeeecC-CeEEEEEEeccCCccc
Confidence 568887 9999999 222221 111 11134566665554444334 5554 88988543
No 361
>COG1161 Predicted GTPases [General function prediction only]
Probab=68.14 E-value=5.3 Score=33.06 Aligned_cols=51 Identities=12% Similarity=0.122 Sum_probs=33.5
Q ss_pred eeEEE-EeCCCCc---eeEeeeccCCCcccCcceeeeeEEEEEecCCCee-eeCCCc
Q psy15036 43 NFGTQ-LGRRGIP---LLKHLKYLGTGTHGKTVGIVFPAISVTYSIGPRY-FRFPLV 94 (179)
Q Consensus 43 ~~Kiv-lG~~gvG---~~~~~~~~~~~~~~~Ti~~~~~~k~v~~~~~~~i-wDt~G~ 94 (179)
.+++. +|-++|| ++..+.+...-...+.-|.+.....+.++ .... +||+|-
T Consensus 132 ~~~v~vvG~PNVGKSslIN~L~~k~~~~~s~~PG~Tk~~q~i~~~-~~i~LlDtPGi 187 (322)
T COG1161 132 KIRVGVVGYPNVGKSTLINRLLGKKVAKTSNRPGTTKGIQWIKLD-DGIYLLDTPGI 187 (322)
T ss_pred ceEEEEEcCCCCcHHHHHHHHhcccceeeCCCCceecceEEEEcC-CCeEEecCCCc
Confidence 46676 9999999 55555544443334444655556667777 5544 999995
No 362
>KOG0447|consensus
Probab=68.10 E-value=31 Score=31.17 Aligned_cols=70 Identities=9% Similarity=-0.013 Sum_probs=43.0
Q ss_pred hchhhhhhhhcCCcEEEEEEeCCChhhHHHHHHHHHHH-HHHhCCccCccccceEEEEeeCCCcCCCCCCCHHHHHHHHh
Q psy15036 96 RFLSLTTGLYRGTMGFLLIFDVTNENSFKDVEKWLLQI-KVMDGALFTHFELQIVFMRGCLELLQRCREVVTPDQIMFGS 174 (179)
Q Consensus 96 ~~~~~~~~~~~~~~~vilvyDit~~~Sf~~l~~w~~~i-~~~~~~~~~~~~~~~iilvGnK~Dl~~~r~Vs~~e~~~~a~ 174 (179)
....+...|+.+.+++|||..=- |.+.-..-...+ .+..+.. -..|+|-+|.||.++.--+.+.+++..+
T Consensus 437 ~I~~msKayM~NPNAIILCIQDG---SVDAERSnVTDLVsq~DP~G------rRTIfVLTKVDlAEknlA~PdRI~kIle 507 (980)
T KOG0447|consen 437 TIFSISKAYMQNPNAIILCIQDG---SVDAERSIVTDLVSQMDPHG------RRTIFVLTKVDLAEKNVASPSRIQQIIE 507 (980)
T ss_pred HHHHHHHHHhcCCCeEEEEeccC---CcchhhhhHHHHHHhcCCCC------CeeEEEEeecchhhhccCCHHHHHHHHh
Confidence 34578899999999999998322 222222222222 2223322 2457788999998876667766665543
No 363
>PHA02518 ParA-like protein; Provisional
Probab=66.31 E-value=32 Score=25.73 Aligned_cols=61 Identities=8% Similarity=-0.080 Sum_probs=36.9
Q ss_pred eeCCCchhchhhhhhhhcCCcEEEEEEeCCChhhHH---HHHHHHHHHHHHhCCccCccccceEEEEeeCCCc
Q psy15036 89 FRFPLVSRFLSLTTGLYRGTMGFLLIFDVTNENSFK---DVEKWLLQIKVMDGALFTHFELQIVFMRGCLELL 158 (179)
Q Consensus 89 wDt~G~e~~~~~~~~~~~~~~~vilvyDit~~~Sf~---~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl 158 (179)
+|++|.. ..+....+..+|.+|++...+ +.++. ++..+++++....... +...++.|+.+-
T Consensus 82 iD~p~~~--~~~~~~~l~~aD~viip~~ps-~~~~~~~~~~~~~~~~~~~~~~~~------~~~~iv~n~~~~ 145 (211)
T PHA02518 82 VDGAPQD--SELARAALRIADMVLIPVQPS-PFDIWAAPDLVELIKARQEVTDGL------PKFAFIISRAIK 145 (211)
T ss_pred EeCCCCc--cHHHHHHHHHCCEEEEEeCCC-hhhHHHHHHHHHHHHHHHhhCCCC------ceEEEEEeccCC
Confidence 8999863 345667788999999988765 33444 4444444443322221 445566787653
No 364
>KOG2655|consensus
Probab=65.59 E-value=52 Score=27.91 Aligned_cols=13 Identities=31% Similarity=0.749 Sum_probs=10.9
Q ss_pred eeeEEE-EeCCCCc
Q psy15036 42 FNFGTQ-LGRRGIP 54 (179)
Q Consensus 42 ~~~Kiv-lG~~gvG 54 (179)
+.|.++ +|++|.|
T Consensus 20 ~~ftlmvvG~sGlG 33 (366)
T KOG2655|consen 20 FDFTLMVVGESGLG 33 (366)
T ss_pred CceEEEEecCCCcc
Confidence 357786 9999999
No 365
>TIGR02836 spore_IV_A stage IV sporulation protein A. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.
Probab=63.96 E-value=1e+02 Score=27.10 Aligned_cols=46 Identities=9% Similarity=0.075 Sum_probs=31.4
Q ss_pred hhc-CCcEEEEEE-eCC----ChhhHHHH-HHHHHHHHHHhCCccCccccceEEEEeeCCCc
Q psy15036 104 LYR-GTMGFLLIF-DVT----NENSFKDV-EKWLLQIKVMDGALFTHFELQIVFMRGCLELL 158 (179)
Q Consensus 104 ~~~-~~~~vilvy-Dit----~~~Sf~~l-~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl 158 (179)
-+. +++..|+|. |-+ .++.+... .+|++++++.. .|+++|-||.|-
T Consensus 140 VI~dhstIgivVtTDgsi~dI~Re~y~~aEe~~i~eLk~~~---------kPfiivlN~~dp 192 (492)
T TIGR02836 140 VIQEHSTIGVVVTTDGTITDIPREDYVEAEERVIEELKELN---------KPFIILLNSTHP 192 (492)
T ss_pred HHHhcCcEEEEEEcCCCccccccccchHHHHHHHHHHHhcC---------CCEEEEEECcCC
Confidence 344 899999988 553 23445554 57888887653 367778899993
No 366
>COG1162 Predicted GTPases [General function prediction only]
Probab=60.86 E-value=32 Score=28.38 Aligned_cols=52 Identities=8% Similarity=0.008 Sum_probs=31.6
Q ss_pred hhhhhhcCCcEEEEEEeCCChh-hHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCC
Q psy15036 100 LTTGLYRGTMGFLLIFDVTNEN-SFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQR 160 (179)
Q Consensus 100 ~~~~~~~~~~~vilvyDit~~~-Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~ 160 (179)
+.+.-.-+.+-+++|+...+++ +..-+.+++-.+....- .|+ +|-||.||.+
T Consensus 72 L~Rp~v~n~d~~iiIvs~~~P~~~~~~ldR~Lv~ae~~gi--------~pv-IvlnK~DL~~ 124 (301)
T COG1162 72 LIRPPVANNDQAIIVVSLVDPDFNTNLLDRYLVLAEAGGI--------EPV-IVLNKIDLLD 124 (301)
T ss_pred eeCCcccccceEEEEEeccCCCCCHHHHHHHHHHHHHcCC--------cEE-EEEEccccCc
Confidence 3333444467777777777764 45556666655554332 244 4469999965
No 367
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=60.69 E-value=21 Score=24.52 Aligned_cols=40 Identities=8% Similarity=-0.085 Sum_probs=28.2
Q ss_pred cEEEEEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEee
Q psy15036 109 MGFLLIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGC 154 (179)
Q Consensus 109 ~~vilvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGn 154 (179)
+.-+++++.++...+..+..+++.+++..+.+ +++++.|.
T Consensus 50 ~pdvV~iS~~~~~~~~~~~~~i~~l~~~~~~~------~~i~vGG~ 89 (119)
T cd02067 50 DADAIGLSGLLTTHMTLMKEVIEELKEAGLDD------IPVLVGGA 89 (119)
T ss_pred CCCEEEEeccccccHHHHHHHHHHHHHcCCCC------CeEEEECC
Confidence 33355556677788999999999999875523 56666564
No 368
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=60.51 E-value=4.4 Score=32.11 Aligned_cols=14 Identities=29% Similarity=0.560 Sum_probs=10.2
Q ss_pred EEeCCCCc---eeEeee
Q psy15036 47 QLGRRGIP---LLKHLK 60 (179)
Q Consensus 47 vlG~~gvG---~~~~~~ 60 (179)
++|.+||| +++.+.
T Consensus 125 ~~G~sgvGKStLiN~L~ 141 (245)
T TIGR00157 125 FAGQSGVGKSSLINALD 141 (245)
T ss_pred EECCCCCCHHHHHHHHh
Confidence 39999999 554444
No 369
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=59.66 E-value=11 Score=27.29 Aligned_cols=18 Identities=11% Similarity=0.277 Sum_probs=12.8
Q ss_pred eeEEE-EeCCCCc---eeEeee
Q psy15036 43 NFGTQ-LGRRGIP---LLKHLK 60 (179)
Q Consensus 43 ~~Kiv-lG~~gvG---~~~~~~ 60 (179)
..+++ +|.++|| +++.+.
T Consensus 100 ~~~~~~~G~~~~GKstlin~l~ 121 (155)
T cd01849 100 SITVGVIGYPNVGKSSVINALL 121 (155)
T ss_pred CcEEEEEccCCCCHHHHHHHHH
Confidence 45676 9999999 454444
No 370
>PRK12289 GTPase RsgA; Reviewed
Probab=58.57 E-value=9.2 Score=32.16 Aligned_cols=13 Identities=31% Similarity=0.577 Sum_probs=9.9
Q ss_pred EeCCCCc---eeEeee
Q psy15036 48 LGRRGIP---LLKHLK 60 (179)
Q Consensus 48 lG~~gvG---~~~~~~ 60 (179)
+|.+||| +++.+.
T Consensus 178 iG~SgVGKSSLIN~L~ 193 (352)
T PRK12289 178 AGPSGVGKSSLINRLI 193 (352)
T ss_pred EeCCCCCHHHHHHHHc
Confidence 9999999 555444
No 371
>KOG2484|consensus
Probab=58.42 E-value=22 Score=30.58 Aligned_cols=49 Identities=12% Similarity=-0.013 Sum_probs=32.7
Q ss_pred hhhhcCCcEEEEEEeCCChhhHHH--HHHHHHHHHHHhCCccCccccceEEEEeeCCCcCC
Q psy15036 102 TGLYRGTMGFLLIFDVTNENSFKD--VEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQR 160 (179)
Q Consensus 102 ~~~~~~~~~vilvyDit~~~Sf~~--l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~ 160 (179)
......+|+||-|.|--++.+-.. +..|+ .+..+++ ..|||-||.||..
T Consensus 141 rkvve~sDVVleVlDARDPlgtR~~~vE~~V---~~~~gnK-------kLILVLNK~DLVP 191 (435)
T KOG2484|consen 141 RKVVEASDVVLEVLDARDPLGTRCPEVEEAV---LQAHGNK-------KLILVLNKIDLVP 191 (435)
T ss_pred HHHHhhhheEEEeeeccCCCCCCChhHHHHH---HhccCCc-------eEEEEeehhccCC
Confidence 334557999999999999977543 34443 2223332 5678899999843
No 372
>PF03709 OKR_DC_1_N: Orn/Lys/Arg decarboxylase, N-terminal domain; InterPro: IPR005308 This domain has a flavodoxin-like fold, and is termed the "wing" domain because of its position in the overall 3D structure. Ornithine decarboxylase from Lactobacillus 30a (L30a OrnDC, P43099 from SWISSPROT) is representative of the large, pyridoxal-5'-phosphate-dependent decarboxylases that act on lysine, arginine or ornithine. The crystal structure of the L30a OrnDC has been solved to 3.0 A resolution. Six dimers related by C6 symmetry compose the enzymatically active dodecamer (approximately 106 Da). Each monomer of L30a OrnDC can be described in terms of five sequential folding domains. The amino-terminal domain, residues 1 to 107, consists of a five-stranded beta-sheet termed the "wing" domain. Two wing domains of each dimer project inward towards the centre of the dodecamer and contribute to dodecamer stabilisation [].; GO: 0016831 carboxy-lyase activity; PDB: 3Q16_C 3N75_A 1C4K_A 1ORD_A 2VYC_D.
Probab=56.00 E-value=50 Score=22.76 Aligned_cols=43 Identities=12% Similarity=-0.010 Sum_probs=30.1
Q ss_pred cCCcEEEEEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCC
Q psy15036 106 RGTMGFLLIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLE 156 (179)
Q Consensus 106 ~~~~~vilvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~ 156 (179)
..++...+|+|.. .+..+.....++.+++.... .|++|++++.
T Consensus 35 ~~~~i~avvi~~d-~~~~~~~~~ll~~i~~~~~~-------iPVFl~~~~~ 77 (115)
T PF03709_consen 35 SFTDIAAVVISWD-GEEEDEAQELLDKIRERNFG-------IPVFLLAERD 77 (115)
T ss_dssp CTTTEEEEEEECH-HHHHHHHHHHHHHHHHHSTT--------EEEEEESCC
T ss_pred hCCCeeEEEEEcc-cccchhHHHHHHHHHHhCCC-------CCEEEEecCC
Confidence 3456666666655 66777778888998887766 7888888744
No 373
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=52.32 E-value=12 Score=28.64 Aligned_cols=27 Identities=4% Similarity=-0.271 Sum_probs=17.0
Q ss_pred eEEEEeeCCCcCCCCCCCHHHHHHHHh
Q psy15036 148 IVFMRGCLELLQRCREVVTPDQIMFGS 174 (179)
Q Consensus 148 ~iilvGnK~Dl~~~r~Vs~~e~~~~a~ 174 (179)
+.+++.||.|+.+......++..+..+
T Consensus 150 a~iiv~NK~Dl~~~~~~~~~~~~~~l~ 176 (207)
T TIGR00073 150 ADLIVINKADLAEAVGFDVEKMKADAK 176 (207)
T ss_pred CCEEEEEHHHccccchhhHHHHHHHHH
Confidence 457889999997644444444544443
No 374
>KOG1532|consensus
Probab=51.43 E-value=51 Score=27.22 Aligned_cols=14 Identities=0% Similarity=-0.353 Sum_probs=12.1
Q ss_pred ceEEEEeeCCCcCC
Q psy15036 147 QIVFMRGCLELLQR 160 (179)
Q Consensus 147 ~~iilvGnK~Dl~~ 160 (179)
.|.|+|-||+|+.+
T Consensus 182 lp~ivvfNK~Dv~d 195 (366)
T KOG1532|consen 182 LPFIVVFNKTDVSD 195 (366)
T ss_pred CCeEEEEecccccc
Confidence 68889999999975
No 375
>KOG0448|consensus
Probab=50.79 E-value=70 Score=29.54 Aligned_cols=62 Identities=10% Similarity=0.130 Sum_probs=39.0
Q ss_pred eeCCCch---hchhhhhhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCC
Q psy15036 89 FRFPLVS---RFLSLTTGLYRGTMGFLLIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQR 160 (179)
Q Consensus 89 wDt~G~e---~~~~~~~~~~~~~~~vilvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~ 160 (179)
.|.+|-+ ...+-...++.++|++|+|..--|.-+..+ ++.+..+.+. + |-|+++.||-|...
T Consensus 211 iDsPGld~~se~tswid~~cldaDVfVlV~NaEntlt~se-k~Ff~~vs~~---K------pniFIlnnkwDasa 275 (749)
T KOG0448|consen 211 IDSPGLDVDSELTSWIDSFCLDADVFVLVVNAENTLTLSE-KQFFHKVSEE---K------PNIFILNNKWDASA 275 (749)
T ss_pred ccCCCCCCchhhhHHHHHHhhcCCeEEEEecCccHhHHHH-HHHHHHhhcc---C------CcEEEEechhhhhc
Confidence 6777754 333455678889999999876544433332 3444444333 3 56778889999744
No 376
>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=49.26 E-value=1.3e+02 Score=26.21 Aligned_cols=76 Identities=13% Similarity=-0.024 Sum_probs=46.5
Q ss_pred cceeeeeEEEEEecCCCee--eeCCCchhchhhhhhhhcCCcEEEEEEeCC---ChhhHHHHHHHHHHHHHHhCCccCcc
Q psy15036 70 TVGIVFPAISVTYSIGPRY--FRFPLVSRFLSLTTGLYRGTMGFLLIFDVT---NENSFKDVEKWLLQIKVMDGALFTHF 144 (179)
Q Consensus 70 Ti~~~~~~k~v~~~~~~~i--wDt~G~e~~~~~~~~~~~~~~~vilvyDit---~~~Sf~~l~~w~~~i~~~~~~~~~~~ 144 (179)
|+...|+ ..... +..+ .|.+|++++-.-.-.=....|.+++|.+.+ ..++-+.+. +.+..+-
T Consensus 37 TiDlg~~--y~~~~-d~~~~fIDvpgh~~~i~~miag~~~~d~alLvV~~deGl~~qtgEhL~-----iLdllgi----- 103 (447)
T COG3276 37 TIDLGFY--YRKLE-DGVMGFIDVPGHPDFISNLLAGLGGIDYALLVVAADEGLMAQTGEHLL-----ILDLLGI----- 103 (447)
T ss_pred eEeeeeE--eccCC-CCceEEeeCCCcHHHHHHHHhhhcCCceEEEEEeCccCcchhhHHHHH-----HHHhcCC-----
Confidence 4443343 34445 4444 899999998543333455789999999985 344444432 1222222
Q ss_pred ccceEEEEeeCCCcCC
Q psy15036 145 ELQIVFMRGCLELLQR 160 (179)
Q Consensus 145 ~~~~iilvGnK~Dl~~ 160 (179)
.-.++|.+|+|+.+
T Consensus 104 --~~giivltk~D~~d 117 (447)
T COG3276 104 --KNGIIVLTKADRVD 117 (447)
T ss_pred --CceEEEEecccccc
Confidence 35678889999865
No 377
>KOG1143|consensus
Probab=49.02 E-value=99 Score=26.75 Aligned_cols=60 Identities=13% Similarity=0.038 Sum_probs=32.7
Q ss_pred eeCCCchhchhhh----hhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCC
Q psy15036 89 FRFPLVSRFLSLT----TGLYRGTMGFLLIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQR 160 (179)
Q Consensus 89 wDt~G~e~~~~~~----~~~~~~~~~vilvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~ 160 (179)
.|.+|+.+|.... ..|. .|..+||.+...--.. ..+.-+-.+... + .|++++-+|.||.+
T Consensus 254 iDLAGh~kY~~TTi~gLtgY~--Ph~A~LvVsA~~Gi~~-tTrEHLgl~~AL---~------iPfFvlvtK~Dl~~ 317 (591)
T KOG1143|consen 254 IDLAGHAKYQKTTIHGLTGYT--PHFACLVVSADRGITW-TTREHLGLIAAL---N------IPFFVLVTKMDLVD 317 (591)
T ss_pred eecccchhhheeeeeecccCC--CceEEEEEEcCCCCcc-ccHHHHHHHHHh---C------CCeEEEEEeecccc
Confidence 8999999986432 1232 4566666654332111 111222223322 2 57777789999965
No 378
>KOG1486|consensus
Probab=48.27 E-value=96 Score=25.35 Aligned_cols=89 Identities=17% Similarity=0.193 Sum_probs=52.2
Q ss_pred eeEEE-EeCCCCc---eeEeeeccC--CCcccCcceeeeeEEEEEecCCCee--eeCCCchhchh-------hhhhhhcC
Q psy15036 43 NFGTQ-LGRRGIP---LLKHLKYLG--TGTHGKTVGIVFPAISVTYSIGPRY--FRFPLVSRFLS-------LTTGLYRG 107 (179)
Q Consensus 43 ~~Kiv-lG~~gvG---~~~~~~~~~--~~~~~~Ti~~~~~~k~v~~~~~~~i--wDt~G~e~~~~-------~~~~~~~~ 107 (179)
.-+|. ||-+.|| ++..+...- ...|..|.- ++..-.+.++ |..+ .|.+|--.-.+ ..-..-|.
T Consensus 62 daRValIGfPSVGKStlLs~iT~T~SeaA~yeFTTL-tcIpGvi~y~-ga~IQllDLPGIieGAsqgkGRGRQviavArt 139 (364)
T KOG1486|consen 62 DARVALIGFPSVGKSTLLSKITSTHSEAASYEFTTL-TCIPGVIHYN-GANIQLLDLPGIIEGASQGKGRGRQVIAVART 139 (364)
T ss_pred CeEEEEecCCCccHHHHHHHhhcchhhhhceeeeEE-EeecceEEec-CceEEEecCcccccccccCCCCCceEEEEeec
Confidence 45786 9999999 555554321 223333321 2223445667 7777 78776322111 11235678
Q ss_pred CcEEEEEEeCCChhhHHHH-HHHHHHH
Q psy15036 108 TMGFLLIFDVTNENSFKDV-EKWLLQI 133 (179)
Q Consensus 108 ~~~vilvyDit~~~Sf~~l-~~w~~~i 133 (179)
+|.+++|.|.+..+--..+ .+-++.+
T Consensus 140 aDlilMvLDatk~e~qr~~le~ELe~v 166 (364)
T KOG1486|consen 140 ADLILMVLDATKSEDQREILEKELEAV 166 (364)
T ss_pred ccEEEEEecCCcchhHHHHHHHHHHHh
Confidence 9999999999987666543 4555544
No 379
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=48.23 E-value=42 Score=27.31 Aligned_cols=55 Identities=5% Similarity=-0.157 Sum_probs=30.9
Q ss_pred eeCCCchhchhhhhhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCC
Q psy15036 89 FRFPLVSRFLSLTTGLYRGTMGFLLIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQR 160 (179)
Q Consensus 89 wDt~G~e~~~~~~~~~~~~~~~vilvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~ 160 (179)
.||+|...- .......+|.++++-+ +++-+.++...+.+. . .|.++|.||+|+..
T Consensus 132 idT~G~~~~---e~~i~~~aD~i~vv~~---~~~~~el~~~~~~l~----~-------~~~ivv~NK~Dl~~ 186 (300)
T TIGR00750 132 VETVGVGQS---EVDIANMADTFVVVTI---PGTGDDLQGIKAGLM----E-------IADIYVVNKADGEG 186 (300)
T ss_pred EeCCCCchh---hhHHHHhhceEEEEec---CCccHHHHHHHHHHh----h-------hccEEEEEcccccc
Confidence 677774311 1224566777777633 344455544443332 1 24567789999965
No 380
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=48.15 E-value=51 Score=22.88 Aligned_cols=42 Identities=7% Similarity=-0.021 Sum_probs=29.1
Q ss_pred cCCcEEEEEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeC
Q psy15036 106 RGTMGFLLIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCL 155 (179)
Q Consensus 106 ~~~~~vilvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK 155 (179)
.++++++++ .++..+.+.+..+++.+++....+ +++++.|+.
T Consensus 49 ~~~d~V~iS--~~~~~~~~~~~~~~~~L~~~~~~~------i~i~~GG~~ 90 (122)
T cd02071 49 EDVDVIGLS--SLSGGHMTLFPEVIELLRELGAGD------ILVVGGGII 90 (122)
T ss_pred cCCCEEEEc--ccchhhHHHHHHHHHHHHhcCCCC------CEEEEECCC
Confidence 356666654 456788888899999998875544 566666654
No 381
>PF05894 Podovirus_Gp16: Podovirus DNA encapsidation protein (Gp16); InterPro: IPR008784 This family consists of several DNA encapsidation protein (Gp16) sequences from the phi-29-like viruses. Gene product 16 catalyses the in vivo and in vitro genome-encapsidation reaction [].; GO: 0005524 ATP binding, 0019069 viral capsid assembly
Probab=47.58 E-value=50 Score=27.52 Aligned_cols=31 Identities=10% Similarity=0.013 Sum_probs=21.4
Q ss_pred hhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCc
Q psy15036 121 NSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELL 158 (179)
Q Consensus 121 ~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl 158 (179)
+.++.+...+..+.+.... ..++.+||=.+.
T Consensus 133 nEv~~Lln~i~TV~R~rd~-------i~vicl~Navs~ 163 (333)
T PF05894_consen 133 NEVKALLNFIDTVFRFRDR-------IRVICLSNAVSI 163 (333)
T ss_pred hHHHHHHHHHHHHhhcccc-------eEEEEEeccccc
Confidence 4466777777777777654 678888885543
No 382
>cd02117 NifH_like This family contains the NifH (iron protein) of nitrogenase, L subunit (BchL/ChlL) of the protochlorophyllide reductase and the BchX subunit of the Chlorophyllide reductase. Members of this family use energey from ATP hydrolysis and transfer electrons through a Fe4-S4 cluster to other subunit for reduction of substrate.
Probab=46.75 E-value=1.3e+02 Score=22.85 Aligned_cols=80 Identities=4% Similarity=-0.202 Sum_probs=44.0
Q ss_pred eeCCCchhchhhh-hhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCCCCCCCHH
Q psy15036 89 FRFPLVSRFLSLT-TGLYRGTMGFLLIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQRCREVVTP 167 (179)
Q Consensus 89 wDt~G~e~~~~~~-~~~~~~~~~vilvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~~r~Vs~~ 167 (179)
.|+.|.-....+. ....+.+|.++++.+. +..+...+...++.+++..... +.....++-||.+.. ...+
T Consensus 122 ID~~g~~~~~~~~~~l~~~~ad~vliv~~p-~~~sl~~~~~l~~~i~~~~~~~----~~~~~gvv~N~~~~~----~~~~ 192 (212)
T cd02117 122 YDVLGDVVCGGFAMPIREGKADEIYIVTSG-EFMALYAANNICKGIRKYAKSG----GVRLGGLICNSRNTD----RETE 192 (212)
T ss_pred EecCCCceecccccccccccCcEEEEEecc-cHHHHHHHHHHHHHHHHhCccc----CCcEEEEEEeCCCCc----cHHH
Confidence 8886644222221 1113479999999976 5556666655555555443220 112445778998853 3334
Q ss_pred HHHHHHhhhC
Q psy15036 168 DQIMFGSTQS 177 (179)
Q Consensus 168 e~~~~a~~~~ 177 (179)
...++.++.+
T Consensus 193 ~~~~~~~~~~ 202 (212)
T cd02117 193 LIDAFAERLG 202 (212)
T ss_pred HHHHHHHHcC
Confidence 5566666543
No 383
>KOG0469|consensus
Probab=46.70 E-value=23 Score=31.62 Aligned_cols=71 Identities=15% Similarity=-0.009 Sum_probs=44.6
Q ss_pred eeCCCchhchhhhhhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcC-CCCCCCHH
Q psy15036 89 FRFPLVSRFLSLTTGLYRGTMGFLLIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQ-RCREVVTP 167 (179)
Q Consensus 89 wDt~G~e~~~~~~~~~~~~~~~vilvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~-~~r~Vs~~ 167 (179)
.|.+|+..|++-...-+|-+||.++|.|.-+---.+. ..-+ ++...+. ...+|+-||.|.. =+-+++.|
T Consensus 103 IDSPGHVDFSSEVTAALRVTDGALVVVDcv~GvCVQT-ETVL---rQA~~ER------IkPvlv~NK~DRAlLELq~~~E 172 (842)
T KOG0469|consen 103 IDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQT-ETVL---RQAIAER------IKPVLVMNKMDRALLELQLSQE 172 (842)
T ss_pred ccCCCcccchhhhhheeEeccCcEEEEEccCceEech-HHHH---HHHHHhh------ccceEEeehhhHHHHhhcCCHH
Confidence 8999999999988889999999999998654311110 1111 1222222 2335667999952 13466766
Q ss_pred HH
Q psy15036 168 DQ 169 (179)
Q Consensus 168 e~ 169 (179)
|.
T Consensus 173 eL 174 (842)
T KOG0469|consen 173 EL 174 (842)
T ss_pred HH
Confidence 64
No 384
>PRK13660 hypothetical protein; Provisional
Probab=45.85 E-value=1.2e+02 Score=22.99 Aligned_cols=21 Identities=38% Similarity=0.466 Sum_probs=15.8
Q ss_pred hhhhcCCcEEEEEEeCCChhh
Q psy15036 102 TGLYRGTMGFLLIFDVTNENS 122 (179)
Q Consensus 102 ~~~~~~~~~vilvyDit~~~S 122 (179)
.....+++++|++||-..+-+
T Consensus 124 ~fmv~~sd~~i~~YD~e~~Gg 144 (182)
T PRK13660 124 QFMLEHTDGALLVYDEENEGS 144 (182)
T ss_pred HHHHHccCeEEEEEcCCCCCC
Confidence 334568999999999876643
No 385
>KOG3859|consensus
Probab=45.67 E-value=19 Score=29.63 Aligned_cols=16 Identities=25% Similarity=0.518 Sum_probs=13.6
Q ss_pred cCceeeEEE-EeCCCCc
Q psy15036 39 EFSFNFGTQ-LGRRGIP 54 (179)
Q Consensus 39 ~~~~~~Kiv-lG~~gvG 54 (179)
..-+.|.|+ +|+.|.|
T Consensus 38 ~~GF~FNilCvGETg~G 54 (406)
T KOG3859|consen 38 SQGFCFNILCVGETGLG 54 (406)
T ss_pred hcCceEEEEEeccCCcc
Confidence 445789999 9999999
No 386
>PRK12288 GTPase RsgA; Reviewed
Probab=44.70 E-value=23 Score=29.64 Aligned_cols=14 Identities=29% Similarity=0.570 Sum_probs=10.3
Q ss_pred EEeCCCCc---eeEeee
Q psy15036 47 QLGRRGIP---LLKHLK 60 (179)
Q Consensus 47 vlG~~gvG---~~~~~~ 60 (179)
++|.+||| +++.+.
T Consensus 210 ~vG~sgVGKSTLiN~Ll 226 (347)
T PRK12288 210 FVGQSGVGKSSLINALL 226 (347)
T ss_pred EECCCCCCHHHHHHHhc
Confidence 49999999 554444
No 387
>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.
Probab=44.61 E-value=88 Score=20.45 Aligned_cols=41 Identities=17% Similarity=0.111 Sum_probs=29.8
Q ss_pred eeCCCchhchhhhhhhhcCCcEEEEEEeCCChhhHHHHHHHHHH
Q psy15036 89 FRFPLVSRFLSLTTGLYRGTMGFLLIFDVTNENSFKDVEKWLLQ 132 (179)
Q Consensus 89 wDt~G~e~~~~~~~~~~~~~~~vilvyDit~~~Sf~~l~~w~~~ 132 (179)
.|+++.... .....+..+|.++++.+. +..++..+..+++.
T Consensus 45 iD~p~~~~~--~~~~~l~~ad~viv~~~~-~~~s~~~~~~~~~~ 85 (104)
T cd02042 45 IDTPPSLGL--LTRNALAAADLVLIPVQP-SPLDLDGLEKLLET 85 (104)
T ss_pred EeCcCCCCH--HHHHHHHHCCEEEEeccC-CHHHHHHHHHHHHH
Confidence 888876432 334677889999999875 56688888877774
No 388
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=43.85 E-value=47 Score=28.61 Aligned_cols=59 Identities=10% Similarity=0.014 Sum_probs=30.1
Q ss_pred eeCCCchhchhh----hhhhhcC--CcEEEEEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcC
Q psy15036 89 FRFPLVSRFLSL----TTGLYRG--TMGFLLIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQ 159 (179)
Q Consensus 89 wDt~G~e~~~~~----~~~~~~~--~~~vilvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~ 159 (179)
.||+|...+... ...|+.. ..-+.||.+.+.+ .+.++..++.+....-. =++-+|.|..
T Consensus 287 VDTaGrs~~D~~~i~el~~~~~~~~~i~~~Lvlsat~K--~~dlkei~~~f~~~~i~----------~~I~TKlDET 351 (407)
T COG1419 287 VDTAGRSQYDKEKIEELKELIDVSHSIEVYLVLSATTK--YEDLKEIIKQFSLFPID----------GLIFTKLDET 351 (407)
T ss_pred EeCCCCCccCHHHHHHHHHHHhccccceEEEEEecCcc--hHHHHHHHHHhccCCcc----------eeEEEccccc
Confidence 789987655321 1223332 3445567777644 33444444444433222 2445898853
No 389
>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]
Probab=43.76 E-value=13 Score=32.18 Aligned_cols=76 Identities=18% Similarity=0.267 Sum_probs=51.8
Q ss_pred EeCCCCc---eeEeeeccCCCcccCcceeeeeEEEEEecCCCeeeeCCCchhchhhhhhhhcCCcEEEEEEeCCChhhHH
Q psy15036 48 LGRRGIP---LLKHLKYLGTGTHGKTVGIVFPAISVTYSIGPRYFRFPLVSRFLSLTTGLYRGTMGFLLIFDVTNENSFK 124 (179)
Q Consensus 48 lG~~gvG---~~~~~~~~~~~~~~~Ti~~~~~~k~v~~~~~~~iwDt~G~e~~~~~~~~~~~~~~~vilvyDit~~~Sf~ 124 (179)
+|..|+| +...+.+.+ .|.-| .+.++ |+++ |-.-.|+|+.+....|.+-+.+==.+...++-|-+
T Consensus 355 iG~NGsGKST~~~LLtGL~----~PqsG------~I~ld-g~pV-~~e~ledYR~LfSavFsDyhLF~~ll~~e~~as~q 422 (546)
T COG4615 355 IGGNGSGKSTLAMLLTGLY----QPQSG------EILLD-GKPV-SAEQLEDYRKLFSAVFSDYHLFDQLLGPEGKASPQ 422 (546)
T ss_pred ECCCCCcHHHHHHHHhccc----CCCCC------ceeEC-CccC-CCCCHHHHHHHHHHHhhhHhhhHhhhCCccCCChH
Confidence 9999999 333344443 44444 34466 7776 44456889988888887766544445566667888
Q ss_pred HHHHHHHHHHH
Q psy15036 125 DVEKWLLQIKV 135 (179)
Q Consensus 125 ~l~~w~~~i~~ 135 (179)
.+..|++.+.-
T Consensus 423 ~i~~~LqrLel 433 (546)
T COG4615 423 LIEKWLQRLEL 433 (546)
T ss_pred HHHHHHHHHHH
Confidence 99999998863
No 390
>PF08043 Xin: Xin repeat; InterPro: IPR012510 The repeat has the consensus sequence GDV(K/Q/R)(T/S/G)X(R/K/T) WLFETXPLD. This repeat motif is typically found in the N terminus of the proteins, with a copy number between 2 and 28 repeats. Direct evidence for binding to and stabilising F-actin has been found in the human protein (Q702N9 from SWISSPROT) []. The homologues in mouse and chicken localise in the adherens junction complex of the intercalated disc in cardiac muscle and in the myotendon junction of skeletal muscle. mXin may co-localise with Vinculin which is known to attach the actin to the cytoplasmic membrane []. It has been shown that the amino-terminus of human xin (CMYA1) binds the EVH1 domain of Mena/VASP/EVL, and the carboxy-terminus binds the, for the filamin family unique, domain 20 of filamin C []. This confirms the proposed role of xin repeat containing proteins as F-actin-binding adapter proteins.; GO: 0003779 actin binding, 0030036 actin cytoskeleton organization, 0030054 cell junction
Probab=41.88 E-value=18 Score=16.19 Aligned_cols=12 Identities=25% Similarity=0.700 Sum_probs=8.8
Q ss_pred CceeEEeccccc
Q psy15036 15 ESTFWIFGKPTY 26 (179)
Q Consensus 15 ~~~~~~~~~~~~ 26 (179)
++..|+|+-.++
T Consensus 4 ~~~~wlFEtqpl 15 (16)
T PF08043_consen 4 KTTRWLFETQPL 15 (16)
T ss_pred ceeEEEeecccC
Confidence 467899987654
No 391
>PRK13505 formate--tetrahydrofolate ligase; Provisional
Probab=41.30 E-value=55 Score=29.38 Aligned_cols=45 Identities=9% Similarity=0.009 Sum_probs=28.1
Q ss_pred hHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCCCCCCCHHHHHHHHhhhC
Q psy15036 122 SFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQRCREVVTPDQIMFGSTQS 177 (179)
Q Consensus 122 Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~~r~Vs~~e~~~~a~~~~ 177 (179)
-|.++.+-++.+++.. .|++++.||.|...+ -..+..+++|++.+
T Consensus 357 Gl~NL~RHIenvr~FG---------vPvVVAINKFd~DTe--~Ei~~I~~~c~e~G 401 (557)
T PRK13505 357 GFANLERHIENIRKFG---------VPVVVAINKFVTDTD--AEIAALKELCEELG 401 (557)
T ss_pred HHHHHHHHHHHHHHcC---------CCEEEEEeCCCCCCH--HHHHHHHHHHHHcC
Confidence 3566666666666532 567788899998652 23445666776643
No 392
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=40.71 E-value=26 Score=28.41 Aligned_cols=19 Identities=16% Similarity=0.156 Sum_probs=11.8
Q ss_pred EEEEecCCCee-eeCCCchhc
Q psy15036 78 ISVTYSIGPRY-FRFPLVSRF 97 (179)
Q Consensus 78 k~v~~~~~~~i-wDt~G~e~~ 97 (179)
..+.+. +..+ +||+|..++
T Consensus 207 ~~~~~~-~~~~liDtPG~~~~ 226 (287)
T cd01854 207 ELFPLP-GGGLLIDTPGFREF 226 (287)
T ss_pred EEEEcC-CCCEEEECCCCCcc
Confidence 344454 3334 999998665
No 393
>PF01656 CbiA: CobQ/CobB/MinD/ParA nucleotide binding domain; InterPro: IPR002586 This entry consists of various cobyrinic acid a,c-diamide synthases. These include CbiA and CbiP from Salmonella typhimurium []., and CobQ from Rhodobacter capsulatus []. These amidases catalyse amidations to various side chains of hydrogenobyrinic acid or cobyrinic acid a,c-diamide in the biosynthesis of cobalamin (vitamin B12) from uroporphyrinogen III. Vitamin B12 is an important cofactor and an essential nutrient for many plants and animals and is primarily produced by bacteria [].; PDB: 3K9G_A 3K9H_B 3EZ9_B 3EZF_A 3EZ2_B 3EZ6_A 3EZ7_A 1G3Q_A 1G3R_A 1DTS_A ....
Probab=39.54 E-value=68 Score=23.44 Aligned_cols=63 Identities=10% Similarity=-0.042 Sum_probs=45.1
Q ss_pred eeCCCchhchhhhhhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCC
Q psy15036 89 FRFPLVSRFLSLTTGLYRGTMGFLLIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQR 160 (179)
Q Consensus 89 wDt~G~e~~~~~~~~~~~~~~~vilvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~ 160 (179)
.|+++.-.. .....+..+|.+|++.+.+. .+.+.+..+++.+++..... ..+.+|-||.+...
T Consensus 100 iD~~~~~~~--~~~~~l~~ad~viv~~~~~~-~~i~~~~~~~~~l~~~~~~~------~~~~vv~N~v~~~~ 162 (195)
T PF01656_consen 100 IDTPPGLSD--PVRNALAAADYVIVPIEPDP-SSIEGAERLIELLKRLGKKL------KIIGVVINRVDPGN 162 (195)
T ss_dssp EEECSSSSH--HHHHHHHTSSEEEEEEESSH-HHHHHHHHHHHHHHHHTHTE------EEEEEEEEEETSCC
T ss_pred ecccccccH--HHHHHHHhCceeeeecCCcH-HHHHHHHHHHHHHHHhcccc------ceEEEEEeeeCCCc
Confidence 688765433 35567789999999999754 56888889988888765431 25567789987653
No 394
>PHA02763 hypothetical protein; Provisional
Probab=38.54 E-value=61 Score=21.58 Aligned_cols=21 Identities=24% Similarity=0.618 Sum_probs=17.5
Q ss_pred hhHHHHHHHHHHHHHHhCCcc
Q psy15036 121 NSFKDVEKWLLQIKVMDGALF 141 (179)
Q Consensus 121 ~Sf~~l~~w~~~i~~~~~~~~ 141 (179)
.-|+++..|+.+.++.-...+
T Consensus 65 SGFe~VEeWl~eArrLh~~~i 85 (102)
T PHA02763 65 SGFENVEEWLNEARRLHNDKI 85 (102)
T ss_pred cchhhHHHHHHHHHHHhcCCC
Confidence 469999999999998876654
No 395
>cd07379 MPP_239FB Homo sapiens 239FB and related proteins, metallophosphatase domain. 239FB (Fetal brain protein 239) is thought to play a role in central nervous system development, but its specific role in unknown. 239FB is expressed predominantly in human fetal brain from a gene located in the chromosome 11p13 region associated with the mental retardation component of the WAGR (Wilms tumor, Aniridia, Genitourinary anomalies, Mental retardation) syndrome. Orthologous brp-like (brain protein 239-like) proteins have been identified in the invertebrate amphioxus group and in vertebrates. 239FB belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzyme
Probab=38.31 E-value=65 Score=22.46 Aligned_cols=29 Identities=17% Similarity=0.236 Sum_probs=18.6
Q ss_pred cCCcEEEEEEeCCChhhHHHHHHHHHHHH
Q psy15036 106 RGTMGFLLIFDVTNENSFKDVEKWLLQIK 134 (179)
Q Consensus 106 ~~~~~vilvyDit~~~Sf~~l~~w~~~i~ 134 (179)
.+.|.++++=|+.+.........+.+.+.
T Consensus 18 ~~~D~vi~~GD~~~~~~~~~~~~~~~~l~ 46 (135)
T cd07379 18 PDGDVLIHAGDLTERGTLEELQKFLDWLK 46 (135)
T ss_pred CCCCEEEECCCCCCCCCHHHHHHHHHHHH
Confidence 57899999989887655444433433333
No 396
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=37.78 E-value=13 Score=27.63 Aligned_cols=50 Identities=18% Similarity=0.191 Sum_probs=22.9
Q ss_pred EEeCCCCc---eeEeeeccCCC---cccCc--cee--eeeEEEEEecCCCee-eeCCCchhc
Q psy15036 47 QLGRRGIP---LLKHLKYLGTG---THGKT--VGI--VFPAISVTYSIGPRY-FRFPLVSRF 97 (179)
Q Consensus 47 vlG~~gvG---~~~~~~~~~~~---~~~~T--i~~--~~~~k~v~~~~~~~i-wDt~G~e~~ 97 (179)
++|.+||| +++.+.....- +.... .|- +.....+.++ +..+ .||+|-..+
T Consensus 40 l~G~SGvGKSSLiN~L~~~~~~~t~~is~~~~rGkHTTt~~~l~~l~-~g~~iIDTPGf~~~ 100 (161)
T PF03193_consen 40 LLGQSGVGKSSLINALLPEAKQKTGEISEKTGRGKHTTTHRELFPLP-DGGYIIDTPGFRSF 100 (161)
T ss_dssp EECSTTSSHHHHHHHHHTSS----S--------------SEEEEEET-TSEEEECSHHHHT-
T ss_pred EECCCCCCHHHHHHHHHhhcchhhhhhhcccCCCcccCCCeeEEecC-CCcEEEECCCCCcc
Confidence 39999999 55544432110 00000 110 1123455665 4444 899886544
No 397
>KOG0465|consensus
Probab=36.83 E-value=1e+02 Score=28.29 Aligned_cols=62 Identities=13% Similarity=-0.032 Sum_probs=38.8
Q ss_pred eeCCCchhchhhhhhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCC
Q psy15036 89 FRFPLVSRFLSLTTGLYRGTMGFLLIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQR 160 (179)
Q Consensus 89 wDt~G~e~~~~~~~~~~~~~~~vilvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~ 160 (179)
.||+|+-.|.---..-++-.||+|+|.|-..--.=+...-|.+ ++++. .|.+..-||.|.-+
T Consensus 109 IDTPGHvDFT~EVeRALrVlDGaVlvl~aV~GVqsQt~tV~rQ-~~ry~---------vP~i~FiNKmDRmG 170 (721)
T KOG0465|consen 109 IDTPGHVDFTFEVERALRVLDGAVLVLDAVAGVESQTETVWRQ-MKRYN---------VPRICFINKMDRMG 170 (721)
T ss_pred ecCCCceeEEEEehhhhhhccCeEEEEEcccceehhhHHHHHH-HHhcC---------CCeEEEEehhhhcC
Confidence 8999999987666667888899999987543211122223432 23332 34455569999643
No 398
>COG5258 GTPBP1 GTPase [General function prediction only]
Probab=36.77 E-value=1.8e+02 Score=25.32 Aligned_cols=62 Identities=10% Similarity=-0.161 Sum_probs=36.3
Q ss_pred eeCCCchhchh--hhhhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCC
Q psy15036 89 FRFPLVSRFLS--LTTGLYRGTMGFLLIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQR 160 (179)
Q Consensus 89 wDt~G~e~~~~--~~~~~~~~~~~vilvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~ 160 (179)
.|+.|+|.|-. ++-.+-...|-.+|+.-.++--+--. +.-+-.+. ... .|+|+|-+|+|+..
T Consensus 206 VDtvGHEpwLrTtirGL~gqk~dYglLvVaAddG~~~~t-kEHLgi~~---a~~------lPviVvvTK~D~~~ 269 (527)
T COG5258 206 VDTVGHEPWLRTTIRGLLGQKVDYGLLVVAADDGVTKMT-KEHLGIAL---AME------LPVIVVVTKIDMVP 269 (527)
T ss_pred EecCCccHHHHHHHHHHhccccceEEEEEEccCCcchhh-hHhhhhhh---hhc------CCEEEEEEecccCc
Confidence 78999998843 44455567888888876554321110 11111111 112 58888999999954
No 399
>COG1343 CRISPR-associated protein Cas2 [Defense mechanisms]
Probab=36.23 E-value=1.3e+02 Score=20.05 Aligned_cols=11 Identities=18% Similarity=0.869 Sum_probs=7.5
Q ss_pred EEEEEeCCChh
Q psy15036 111 FLLIFDVTNEN 121 (179)
Q Consensus 111 vilvyDit~~~ 121 (179)
+++|||+++..
T Consensus 3 vlvvYDI~~d~ 13 (89)
T COG1343 3 VLVVYDISDDG 13 (89)
T ss_pred EEEEEecCCcH
Confidence 56777777664
No 400
>PF09827 CRISPR_Cas2: CRISPR associated protein Cas2; InterPro: IPR019199 Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR) are a family of DNA direct repeats separated by regularly sized non-repetitive spacer sequences that are found in most bacterial and archaeal genomes []. CRISPRs appear to provide acquired resistance against bacteriophages, possibly acting with an RNA interference-like mechanism to inhibit gene functions of invasive DNA elements [, ]. Differences in the number and type of spacers between CRISPR repeats correlate with phage sensitivity. It is thought that following phage infection, bacteria integrate new spacers derived from phage genomic sequences, and that the removal or addition of particular spacers modifies the phage-resistance phenotype of the cell. Therefore, the specificity of CRISPRs may be determined by spacer-phage sequence similarity. In addition, there are many protein families known as CRISPR-associated sequences (Cas), which are encoded in the vicinity of CRISPR loci []. CRISPR/cas gene regions can be quite large, with up to 20 different, tandem-arranged cas genes next to a CRISPR cluster or filling the region between two repeat clusters. Cas genes and CRISPRs are found on mobile genetic elements such as plasmids, and have undergone extensive horizontal transfer. Cas proteins are thought to be involved in the propagation and functioning of CRISPRs. Some Cas proteins show similarity to helicases and repair proteins, although the functions of most are unknown. Cas families can be divided into subtypes according to operon organisation and phylogeny. Members of this family of bacterial proteins comprise various hypothetical proteins, as well as CRISPR (clustered regularly interspaced short palindromic repeats) associated proteins, conferring resistance to infection by certain bacteriophages. ; PDB: 3EXC_X 2I0X_A 3OQ2_B 3UI3_A 1ZPW_X 2I8E_A 2IVY_A.
Probab=36.21 E-value=40 Score=21.34 Aligned_cols=23 Identities=22% Similarity=0.424 Sum_probs=15.3
Q ss_pred EEEEEEeCCChhhHHHHHHHHHH
Q psy15036 110 GFLLIFDVTNENSFKDVEKWLLQ 132 (179)
Q Consensus 110 ~vilvyDit~~~Sf~~l~~w~~~ 132 (179)
-++++||+.+......+.+.++.
T Consensus 3 ~~lv~YDi~~~k~~~kv~k~L~~ 25 (78)
T PF09827_consen 3 LYLVAYDISDNKRRNKVRKILKS 25 (78)
T ss_dssp EEEEEEEEHSHHHHHHHHHHHHH
T ss_pred EEEEEEECCCcHHHHHHHHHHHH
Confidence 47899999888655555444333
No 401
>PRK00098 GTPase RsgA; Reviewed
Probab=36.17 E-value=32 Score=28.01 Aligned_cols=15 Identities=40% Similarity=0.609 Sum_probs=10.8
Q ss_pred EE-EeCCCCc---eeEeee
Q psy15036 46 TQ-LGRRGIP---LLKHLK 60 (179)
Q Consensus 46 iv-lG~~gvG---~~~~~~ 60 (179)
++ +|.+||| +++.+.
T Consensus 167 ~~~~G~sgvGKStlin~l~ 185 (298)
T PRK00098 167 TVLAGQSGVGKSTLLNALA 185 (298)
T ss_pred EEEECCCCCCHHHHHHHHh
Confidence 44 9999999 555444
No 402
>TIGR01968 minD_bact septum site-determining protein MinD. This model describes the bacterial and chloroplast form of MinD, a multifunctional cell division protein that guides correct placement of the septum. The homologous archaeal MinD proteins, with many archaeal genomes having two or more forms, are described by a separate model.
Probab=35.34 E-value=2.1e+02 Score=22.02 Aligned_cols=59 Identities=3% Similarity=-0.104 Sum_probs=39.0
Q ss_pred eeCCCchhchhhhhhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCc
Q psy15036 89 FRFPLVSRFLSLTTGLYRGTMGFLLIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELL 158 (179)
Q Consensus 89 wDt~G~e~~~~~~~~~~~~~~~vilvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl 158 (179)
.|+++.-.. .....+..+|.+|++... +..++..+...++.+.+... .++.++.|+.+-
T Consensus 117 iD~p~~~~~--~~~~~l~~aD~viiv~~~-~~~s~~~~~~~~~~l~~~~~--------~~~~iviN~~~~ 175 (261)
T TIGR01968 117 IDCPAGIES--GFRNAVAPADEAIVVTTP-EVSAVRDADRVIGLLEAKGI--------EKIHLIVNRLRP 175 (261)
T ss_pred EeCCCCcCH--HHHHHHHhCCeEEEEcCC-CcHHHHHHHHHHHHHHHcCC--------CceEEEEeCcCc
Confidence 788765322 234456789999998875 46678888777777765432 234556788875
No 403
>COG1010 CobJ Precorrin-3B methylase [Coenzyme metabolism]
Probab=34.37 E-value=1.1e+02 Score=24.38 Aligned_cols=45 Identities=2% Similarity=-0.094 Sum_probs=35.1
Q ss_pred hhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEee
Q psy15036 104 LYRGTMGFLLIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGC 154 (179)
Q Consensus 104 ~~~~~~~vilvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGn 154 (179)
..-.+|.++..|..-++.-=+++.+-++.++++.+.+ .|+.+|-|
T Consensus 151 aAA~adfVi~~YNP~s~~R~~~~~~a~eil~~~r~~~------tpVgivrn 195 (249)
T COG1010 151 AAAEADFVIALYNPISKRRPEQLGRAFEILREHRSPD------TPVGIVRN 195 (249)
T ss_pred HHhhCCEEEEEECCccccchHHHHHHHHHHHHhcCCC------CcEEEEec
Confidence 3457899999999988887777888888888888766 57777644
No 404
>cd02037 MRP-like MRP (Multiple Resistance and pH adaptation) is a homologue of the Fer4_NifH superfamily. Like the other members of the superfamily, MRP contains a ATP-binding domain at the N-termini. It is found in bacteria as a membrane-spanning protein and functions as a Na+/H+ antiporter.
Probab=34.03 E-value=1.8e+02 Score=20.98 Aligned_cols=59 Identities=15% Similarity=0.081 Sum_probs=39.5
Q ss_pred eeCCCchhchhhhhhhh--cCCcEEEEEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCc
Q psy15036 89 FRFPLVSRFLSLTTGLY--RGTMGFLLIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELL 158 (179)
Q Consensus 89 wDt~G~e~~~~~~~~~~--~~~~~vilvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl 158 (179)
.|+++.- ........ ..+|.+++|-..+ +.+...+..+++.+++... +..-+|.|+.+-
T Consensus 73 iD~pp~~--~~~~~~~~~~~~ad~viiV~~p~-~~s~~~~~~~~~~l~~~~~--------~~~gvv~N~~~~ 133 (169)
T cd02037 73 IDMPPGT--GDEHLTLAQSLPIDGAVIVTTPQ-EVALDDVRKAIDMFKKVNI--------PILGVVENMSYF 133 (169)
T ss_pred EeCCCCC--cHHHHHHHhccCCCeEEEEECCc-hhhHHHHHHHHHHHHhcCC--------CeEEEEEcCCcc
Confidence 7888753 22222233 5789999988754 6788888888888887532 345567888874
No 405
>COG1149 MinD superfamily P-loop ATPase containing an inserted ferredoxin domain [Energy production and conversion]
Probab=33.07 E-value=2.4e+02 Score=23.10 Aligned_cols=58 Identities=10% Similarity=-0.004 Sum_probs=39.6
Q ss_pred hhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCCCCCCCHHHHHHHHhhh
Q psy15036 103 GLYRGTMGFLLIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQRCREVVTPDQIMFGSTQ 176 (179)
Q Consensus 103 ~~~~~~~~vilvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~~r~Vs~~e~~~~a~~~ 176 (179)
.-..++|.+|+|=-.| +-.++.++.-++.+.... .|..+|-||.++.. + |..+|+++-
T Consensus 181 ~sl~~aD~ai~VTEPT-p~glhD~kr~~el~~~f~---------ip~~iViNr~~~g~----s--~ie~~~~e~ 238 (284)
T COG1149 181 ASLKGADLAILVTEPT-PFGLHDLKRALELVEHFG---------IPTGIVINRYNLGD----S--EIEEYCEEE 238 (284)
T ss_pred HhhccCCEEEEEecCC-ccchhHHHHHHHHHHHhC---------CceEEEEecCCCCc----h--HHHHHHHHc
Confidence 3578899999987665 456777777777776654 35566779996532 2 666666654
No 406
>cd08166 MPP_Cdc1_like_1 uncharacterized subgroup related to Saccharomyces cerevisiae CDC1, metallophosphatase domain. A functionally uncharacterized subgroup related to the metallophosphatase domain of Saccharomyces cerevisiae Cdc1, S. cerevisiae Ted1 and human MPPE1. Cdc1 is an endoplasmic reticulum-localized transmembrane lipid phosphatase and is a subunit of DNA polymerase delta. TED1 (trafficking of Emp24p/Erv25p-dependent cargo disrupted 1), acts together with Emp24p and Erv25p in cargo exit from the ER. The MPPE1 gene is a candidate susceptibility gene for Bipolar disorder. Proteins in this uncharacterized subgroup belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like R
Probab=31.87 E-value=1.5e+02 Score=22.72 Aligned_cols=67 Identities=9% Similarity=0.100 Sum_probs=39.6
Q ss_pred CCcEEEEEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCC-CCCCCHHHHHHHHh
Q psy15036 107 GTMGFLLIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQR-CREVVTPDQIMFGS 174 (179)
Q Consensus 107 ~~~~vilvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~-~r~Vs~~e~~~~a~ 174 (179)
+.|++|++=|+.|.-...+..+|.+++++...--......+.+.|.||- |.-. ...+..+-.+.|.+
T Consensus 42 ~PD~Vi~lGDL~D~G~~~~~~e~~e~l~Rf~~If~~~~~~~~~~VpGNH-DIG~~~~~~~~~~v~RF~~ 109 (195)
T cd08166 42 QPDIVIFLGDLMDEGSIANDDEYYSYVQRFINIFEVPNGTKIIYLPGDN-DIGGEEEDPIESKIRRFEK 109 (195)
T ss_pred CCCEEEEeccccCCCCCCCHHHHHHHHHHHHHHhcCCCCCcEEEECCCC-CcCCCCCCcCHHHHHHHHH
Confidence 6899999999999877666667777766554210001122455666885 4433 23344454555544
No 407
>TIGR03371 cellulose_yhjQ cellulose synthase operon protein YhjQ. Members of this family are the YhjQ protein, found immediately upsteam of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae. In several species it is seen clearly as part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm (PubMed:16930487), based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.
Probab=31.13 E-value=2.4e+02 Score=21.52 Aligned_cols=62 Identities=8% Similarity=-0.067 Sum_probs=37.9
Q ss_pred eeCCCchhchhhhhhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcC
Q psy15036 89 FRFPLVSRFLSLTTGLYRGTMGFLLIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQ 159 (179)
Q Consensus 89 wDt~G~e~~~~~~~~~~~~~~~vilvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~ 159 (179)
.|+++. ...+....+..+|.++++...+ ..++..+..-+.++.+..... .++-+|-|+.|..
T Consensus 120 iD~pp~--~~~~~~~~l~~ad~vii~~~~~-~~s~~~~~~~~~~l~~~~~~~------~~~~iv~n~~~~~ 181 (246)
T TIGR03371 120 IDVPRG--PSPITRQALAAADLVLVVVNAD-AACYATLHQQALALFAGSGPR------IGPHFLINQFDPA 181 (246)
T ss_pred EECCCC--chHHHHHHHHhCCeEEEEeCCC-HHHHHHHHHHHHHHhhccccc------ccceEEeeccCcc
Confidence 899874 3345667788999999998764 556666663333333211111 2344667998754
No 408
>PF14784 ECIST_Cterm: C-terminal domain of the ECSIT protein
Probab=31.12 E-value=1.1e+02 Score=21.87 Aligned_cols=34 Identities=9% Similarity=0.214 Sum_probs=26.8
Q ss_pred cCCcEEEEEEeCCChhhHHHHHHHHHHHHHHhCC
Q psy15036 106 RGTMGFLLIFDVTNENSFKDVEKWLLQIKVMDGA 139 (179)
Q Consensus 106 ~~~~~vilvyDit~~~Sf~~l~~w~~~i~~~~~~ 139 (179)
..-||.|+..-++...+=+.+..|+..+++..+.
T Consensus 82 eq~dGti~Amc~tg~~~~~sL~~WI~~Lq~~NP~ 115 (126)
T PF14784_consen 82 EQEDGTIFAMCMTGTSDKDSLLSWIRGLQETNPN 115 (126)
T ss_pred EeccceEEEEEeccCCCHHHHHHHHHHHHhhCCc
Confidence 3468888888888888888888999999985543
No 409
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=30.90 E-value=53 Score=22.13 Aligned_cols=9 Identities=22% Similarity=0.235 Sum_probs=7.9
Q ss_pred EE-EeCCCCc
Q psy15036 46 TQ-LGRRGIP 54 (179)
Q Consensus 46 iv-lG~~gvG 54 (179)
++ .|.+|+|
T Consensus 22 v~i~G~~G~G 31 (151)
T cd00009 22 LLLYGPPGTG 31 (151)
T ss_pred EEEECCCCCC
Confidence 44 9999999
No 410
>PF12989 DUF3873: Domain of unknown function, B. Theta Gene description (DUF3873); InterPro: IPR024356 This entry represents a family of uncharacterised proteins found primarily in Bacteroides species. The Bacteroides thetaiotaomicron gene appears to be upregulated in the presence of host or other bacterial species compared to growth in pure culture [, ].
Probab=30.54 E-value=1e+02 Score=19.51 Aligned_cols=51 Identities=16% Similarity=0.236 Sum_probs=28.7
Q ss_pred CCeeeeCCCchhchhhhhhh-hcCCcEEEEEEeCCChhhHHHHHHHHHHHHH
Q psy15036 85 GPRYFRFPLVSRFLSLTTGL-YRGTMGFLLIFDVTNENSFKDVEKWLLQIKV 135 (179)
Q Consensus 85 ~~~iwDt~G~e~~~~~~~~~-~~~~~~vilvyDit~~~Sf~~l~~w~~~i~~ 135 (179)
|-++.-++|.|+|....... +++.-.+-+=|-.++-+=|.-+..-+++.++
T Consensus 8 G~S~c~~~G~E~Y~~f~~~~~~k~~~~~qYdYr~~~GeLFscV~~tLeEcRr 59 (69)
T PF12989_consen 8 GVSICQTPGEEKYEKFQLGIGRKGVTKYQYDYRHTDGELFSCVAPTLEECRR 59 (69)
T ss_pred CeeecCCCCceeeeeeeeccccccceEEEEeeecCCccchhhhhccHHHHHH
Confidence 44556678888886655444 4444444444444555556655555555444
No 411
>COG4502 5'(3')-deoxyribonucleotidase [Nucleotide transport and metabolism]
Probab=30.49 E-value=96 Score=22.89 Aligned_cols=47 Identities=15% Similarity=0.121 Sum_probs=31.3
Q ss_pred hhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeC
Q psy15036 102 TGLYRGTMGFLLIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCL 155 (179)
Q Consensus 102 ~~~~~~~~~vilvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK 155 (179)
......-++.|.-=-.+.+.|++.=-.|+.+.--..+. .-++++|||
T Consensus 78 keLt~~y~vYivtaamdhp~s~~dK~eWl~E~FPFi~~-------qn~vfCgnK 124 (180)
T COG4502 78 KELTSIYNVYIVTAAMDHPKSCEDKGEWLKEKFPFISY-------QNIVFCGNK 124 (180)
T ss_pred HHHHhhheEEEEEeccCCchhHHHHHHHHHHHCCCCCh-------hhEEEecCC
Confidence 33444556666666667889999988998886543333 346677776
No 412
>COG0420 SbcD DNA repair exonuclease [DNA replication, recombination, and repair]
Probab=30.21 E-value=97 Score=26.04 Aligned_cols=47 Identities=17% Similarity=0.221 Sum_probs=32.8
Q ss_pred CCcEEEEE---EeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcC
Q psy15036 107 GTMGFLLI---FDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQ 159 (179)
Q Consensus 107 ~~~~vilv---yDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~ 159 (179)
..|++|+. ||-. .-|...+....+.+++....++ |.+++.||--...
T Consensus 40 ~vD~vliAGDlFd~~-~Ps~~a~~~~~~~l~~l~~~~I-----pv~~I~GNHD~~~ 89 (390)
T COG0420 40 KVDFVLIAGDLFDTN-NPSPRALKLFLEALRRLKDAGI-----PVVVIAGNHDSPS 89 (390)
T ss_pred cCCEEEEccccccCC-CCCHHHHHHHHHHHHHhccCCC-----cEEEecCCCCchh
Confidence 57889985 6654 4477888888888888876552 5556679865443
No 413
>COG3703 ChaC Uncharacterized protein involved in cation transport [Inorganic ion transport and metabolism]
Probab=29.81 E-value=26 Score=26.82 Aligned_cols=17 Identities=29% Similarity=0.698 Sum_probs=10.8
Q ss_pred eeccCCCCceeEEeccccc
Q psy15036 8 MFADSRPESTFWIFGKPTY 26 (179)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~ 26 (179)
|.+.+..+ +||||+-.+
T Consensus 4 ~~s~~~~~--~WVFgYGSL 20 (190)
T COG3703 4 RLAADPDE--LWVFGYGSL 20 (190)
T ss_pred hhccCCCC--eEEEEecce
Confidence 44444444 999999654
No 414
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=29.66 E-value=56 Score=27.40 Aligned_cols=10 Identities=10% Similarity=0.218 Sum_probs=9.0
Q ss_pred EEE-EeCCCCc
Q psy15036 45 GTQ-LGRRGIP 54 (179)
Q Consensus 45 Kiv-lG~~gvG 54 (179)
++. +|..+||
T Consensus 156 ~v~~vG~~nvG 166 (360)
T TIGR03597 156 DVYVVGVTNVG 166 (360)
T ss_pred eEEEECCCCCC
Confidence 676 9999999
No 415
>KOG0961|consensus
Probab=29.27 E-value=2e+02 Score=27.05 Aligned_cols=62 Identities=8% Similarity=0.065 Sum_probs=45.8
Q ss_pred EEEEecCCCee-eeCCCc---------hhchhhhhhhhcCCcEEEEEEeCCChhhHHHH-HHHHHHHHHHhCC
Q psy15036 78 ISVTYSIGPRY-FRFPLV---------SRFLSLTTGLYRGTMGFLLIFDVTNENSFKDV-EKWLLQIKVMDGA 139 (179)
Q Consensus 78 k~v~~~~~~~i-wDt~G~---------e~~~~~~~~~~~~~~~vilvyDit~~~Sf~~l-~~w~~~i~~~~~~ 139 (179)
+.+.+.++..+ .+|+|. |+-+..++.+|.-.+.+++|.-.-+.+.+-.+ ..|-+++.+....
T Consensus 169 ~~~~yP~~sgY~~eTGG~~knLR~lt~ekIR~yHK~~Y~~sN~cviVcG~v~~d~lL~~m~~~~neile~~s~ 241 (1022)
T KOG0961|consen 169 KEVIYPPFSGYAVETGGRLKNLRELTLEKIRDYHKKFYHLSNMCVIVCGMVDHDQLLEIMNNVENEILEHMST 241 (1022)
T ss_pred heeecCCCCCceeccCCChhhHHHhhHHHHHHHHHHhccccceEEEEecCcCHHHHHHHHHHHHhhhhhcccc
Confidence 44444434444 788886 34467778899999999999988888777666 7899988877654
No 416
>KOG2486|consensus
Probab=28.92 E-value=99 Score=25.52 Aligned_cols=101 Identities=17% Similarity=0.098 Sum_probs=51.3
Q ss_pred eeeEEE-EeCCCCc---eeEeee------ccCCCcccCcceeeeeEEEEEecCCCee-eeCCC----------chhchhh
Q psy15036 42 FNFGTQ-LGRRGIP---LLKHLK------YLGTGTHGKTVGIVFPAISVTYSIGPRY-FRFPL----------VSRFLSL 100 (179)
Q Consensus 42 ~~~Kiv-lG~~gvG---~~~~~~------~~~~~~~~~Ti~~~~~~k~v~~~~~~~i-wDt~G----------~e~~~~~ 100 (179)
....++ +|.++|| ++..+. .........|..++++ .++ ..-+ .|.+| .+.+..+
T Consensus 135 ~~pe~~~~g~SNVGKSSLln~~~r~k~~~~t~k~K~g~Tq~in~f----~v~-~~~~~vDlPG~~~a~y~~~~~~d~~~~ 209 (320)
T KOG2486|consen 135 KRPELAFYGRSNVGKSSLLNDLVRVKNIADTSKSKNGKTQAINHF----HVG-KSWYEVDLPGYGRAGYGFELPADWDKF 209 (320)
T ss_pred CCceeeeecCCcccHHHHHhhhhhhhhhhhhcCCCCccceeeeee----ecc-ceEEEEecCCcccccCCccCcchHhHh
Confidence 456787 9999999 333222 2222344555554443 222 2222 67777 2344556
Q ss_pred hhhhhcCCc---EEEEEEeCCCh-hhHHHH-HHHHHHHHHHhCCccCccccceEEEEeeCCCcC
Q psy15036 101 TTGLYRGTM---GFLLIFDVTNE-NSFKDV-EKWLLQIKVMDGALFTHFELQIVFMRGCLELLQ 159 (179)
Q Consensus 101 ~~~~~~~~~---~vilvyDit~~-~Sf~~l-~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~ 159 (179)
...|+.+-+ .+++..|.+-+ +--++. -.|+.+ .+ .|+.+|-||||..
T Consensus 210 t~~Y~leR~nLv~~FLLvd~sv~i~~~D~~~i~~~ge------~~------VP~t~vfTK~DK~ 261 (320)
T KOG2486|consen 210 TKSYLLERENLVRVFLLVDASVPIQPTDNPEIAWLGE------NN------VPMTSVFTKCDKQ 261 (320)
T ss_pred HHHHHHhhhhhheeeeeeeccCCCCCCChHHHHHHhh------cC------CCeEEeeehhhhh
Confidence 666766432 33333444322 111221 234322 22 6777889999974
No 417
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=28.11 E-value=1.4e+02 Score=24.75 Aligned_cols=51 Identities=22% Similarity=0.243 Sum_probs=27.4
Q ss_pred hhhhhhcCCcEEEEEEe-CCC--hhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeC
Q psy15036 100 LTTGLYRGTMGFLLIFD-VTN--ENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCL 155 (179)
Q Consensus 100 ~~~~~~~~~~~vilvyD-it~--~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK 155 (179)
.....++....=++++| +.| .-|..+-...+..++.....- ..|+|.||++
T Consensus 136 ~~~~llr~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL-----~ipiV~vGt~ 189 (302)
T PF05621_consen 136 QVLRLLRRLGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNEL-----QIPIVGVGTR 189 (302)
T ss_pred HHHHHHHHcCCcEEEeechHHHhcccHHHHHHHHHHHHHHhhcc-----CCCeEEeccH
Confidence 34456777777788887 211 122333334444455443321 1678888974
No 418
>KOG0912|consensus
Probab=27.99 E-value=1.2e+02 Score=25.43 Aligned_cols=62 Identities=11% Similarity=0.225 Sum_probs=33.7
Q ss_pred EEEEeCCCh----------hhHHHHHHHHHH-----HHHHhCC---ccCccccceEEEEeeCCCcCCCCCCCHHHHHHHH
Q psy15036 112 LLIFDVTNE----------NSFKDVEKWLLQ-----IKVMDGA---LFTHFELQIVFMRGCLELLQRCREVVTPDQIMFG 173 (179)
Q Consensus 112 ilvyDit~~----------~Sf~~l~~w~~~-----i~~~~~~---~~~~~~~~~iilvGnK~Dl~~~r~Vs~~e~~~~a 173 (179)
+++||.... .+|+.+..|++. +++.--+ .......|.+||.-+|-|.+....-...-++++-
T Consensus 176 ~~~f~pd~~~~~~~f~G~~~nf~el~~Wi~dKcvpLVREiTFeN~EELtEEGlPflILf~~kdD~~s~k~F~~aI~ReL~ 255 (375)
T KOG0912|consen 176 ILVFDPDHSEPNHEFLGSMTNFDELKQWIQDKCVPLVREITFENAEELTEEGLPFLILFRKKDDKESEKIFKNAIARELD 255 (375)
T ss_pred eEEeCCCcCCcCcccccccccHHHHHHHHHhcchhhhhhhhhccHHHHhhcCCceEEEEecCCcccHHHHHHHHHHHHhh
Confidence 666765443 468999999876 2222111 1112233667777888887654333333334333
No 419
>PF06577 DUF1134: Protein of unknown function (DUF1134); InterPro: IPR008325 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=27.89 E-value=2.6e+02 Score=20.83 Aligned_cols=32 Identities=22% Similarity=0.554 Sum_probs=22.7
Q ss_pred EEEecCCCee-eeCCCchhchhhhhhhhcCCcEEEEEEeCCChhhH
Q psy15036 79 SVTYSIGPRY-FRFPLVSRFLSLTTGLYRGTMGFLLIFDVTNENSF 123 (179)
Q Consensus 79 ~v~~~~~~~i-wDt~G~e~~~~~~~~~~~~~~~vilvyDit~~~Sf 123 (179)
.+-.. +-++ ||..++. +...+|||++.+.+.+
T Consensus 70 ~vyWq-GPSiG~D~G~~~------------~r~~~LVYnL~~~~~i 102 (160)
T PF06577_consen 70 KVYWQ-GPSIGFDFGGNG------------SRVFMLVYNLPDPDDI 102 (160)
T ss_pred EEEEe-CCceeEeecCCc------------eEEEEEEEcCCCHHHH
Confidence 34455 7777 9988653 4678999999877543
No 420
>PF09419 PGP_phosphatase: Mitochondrial PGP phosphatase; InterPro: IPR010021 This group of hypothetical proteins is a part of the IIIA subfamily of the haloacid dehalogenase (HAD) superfamily of hydrolases. All characterised members of this subfamily and most characterised members of the HAD superfamily are phosphatases. HAD superfamily phosphatases contain active site residues in several conserved catalytic motifs [], all of which are found conserved here. This family consists of sequences from fungi, plants, cyanobacteria, Gram-positive bacteria and Deinococcus. There is presently no characterisation of any sequence in this family.
Probab=26.81 E-value=2.7e+02 Score=20.78 Aligned_cols=64 Identities=16% Similarity=0.069 Sum_probs=37.7
Q ss_pred hcCCcEEEEEEeCCCh-------hhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCCCCCCCHHHHHHHHhhhC
Q psy15036 105 YRGTMGFLLIFDVTNE-------NSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQRCREVVTPDQIMFGSTQS 177 (179)
Q Consensus 105 ~~~~~~vilvyDit~~-------~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~~r~Vs~~e~~~~a~~~~ 177 (179)
++....=.+++|.+|= +-...+..|++++++..+.. -+++|-|-.-..+ ....++++.+++..+
T Consensus 36 Lk~~Gik~li~DkDNTL~~~~~~~i~~~~~~~~~~l~~~~~~~-------~v~IvSNsaGs~~--d~~~~~a~~~~~~lg 106 (168)
T PF09419_consen 36 LKKKGIKALIFDKDNTLTPPYEDEIPPEYAEWLNELKKQFGKD-------RVLIVSNSAGSSD--DPDGERAEALEKALG 106 (168)
T ss_pred hhhcCceEEEEcCCCCCCCCCcCcCCHHHHHHHHHHHHHCCCC-------eEEEEECCCCccc--CccHHHHHHHHHhhC
Confidence 4444444566776652 23467788999999876542 3666666542222 344566776666543
No 421
>KOG2455|consensus
Probab=26.80 E-value=54 Score=28.70 Aligned_cols=35 Identities=20% Similarity=0.134 Sum_probs=25.4
Q ss_pred CCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCC
Q psy15036 117 VTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQR 160 (179)
Q Consensus 117 it~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~ 160 (179)
+-+..||.+++.|++..+.... .=||.|-|||-..
T Consensus 388 vIh~~sF~rl~k~le~ak~~~~---------leiL~GGk~DdS~ 422 (561)
T KOG2455|consen 388 VIHDKSFARLKKVLEHAKKDPE---------LEILAGGKCDDST 422 (561)
T ss_pred hccHHHHHHHHHHHHhhccCcc---------ceeeecCcccCCC
Confidence 4567899999999988765322 2367899998654
No 422
>cd02033 BchX Chlorophyllide reductase converts chlorophylls into bacteriochlorophylls by reducing the chlorin B-ring. This family contains the X subunit of this three-subunit enzyme. Sequence and structure similarity between bchX, protochlorophyllide reductase L subunit (bchL and chlL) and nitrogenase Fe protein (nifH gene) suggest their functional similarity. Members of the BchX family serve as the unique electron donors to their respective catalytic subunits (bchN-bchB, bchY-bchZ and nitrogenase component 1). Mechanistically, they hydrolyze ATP and transfer electrons through a Fe4-S4 cluster.
Probab=26.59 E-value=3.8e+02 Score=22.33 Aligned_cols=55 Identities=9% Similarity=0.083 Sum_probs=31.5
Q ss_pred CcEEEEEEeCCChhhH---HHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCCCCCCCHHHHHHHHhhh
Q psy15036 108 TMGFLLIFDVTNENSF---KDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQRCREVVTPDQIMFGSTQ 176 (179)
Q Consensus 108 ~~~vilvyDit~~~Sf---~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~~r~Vs~~e~~~~a~~~ 176 (179)
++.+|+| --.+..|. .++.+.++.+++..... +.+-+|.||.|..+ ++.++++..
T Consensus 173 ad~VIVV-t~pe~~si~~A~~v~kai~~~~~lg~~~------~i~GlViNr~d~~~-------~ie~~ae~l 230 (329)
T cd02033 173 AQKVIVV-GSNDLQSLYVANNVCNAVEYFRKLGGNV------GVAGMVINKDDGTG-------EAQAFAAHA 230 (329)
T ss_pred CceEEEe-CCchHHHHHHHHHHHHHHHHHHHhCCCC------CceEEEEeCcCCcc-------hHHHHHHHh
Confidence 4444443 33455566 45667777777654332 34567889998532 356666554
No 423
>PRK13796 GTPase YqeH; Provisional
Probab=26.10 E-value=51 Score=27.73 Aligned_cols=51 Identities=12% Similarity=0.169 Sum_probs=24.6
Q ss_pred EEE-EeCCCCc---eeEeeeccC--CCc---ccCcceeeeeEEEEEecCCCeeeeCCCch
Q psy15036 45 GTQ-LGRRGIP---LLKHLKYLG--TGT---HGKTVGIVFPAISVTYSIGPRYFRFPLVS 95 (179)
Q Consensus 45 Kiv-lG~~gvG---~~~~~~~~~--~~~---~~~Ti~~~~~~k~v~~~~~~~iwDt~G~e 95 (179)
++. +|..+|| +++.+.... ... ..+.-|.+.....+.++++..++||+|-.
T Consensus 162 ~v~vvG~~NvGKSTLiN~L~~~~~~~~~~~~~s~~pGTT~~~~~~~l~~~~~l~DTPGi~ 221 (365)
T PRK13796 162 DVYVVGVTNVGKSTLINRIIKEITGEKDVITTSRFPGTTLDKIEIPLDDGSFLYDTPGII 221 (365)
T ss_pred eEEEEcCCCCcHHHHHHHHHhhccCccceEEecCCCCccceeEEEEcCCCcEEEECCCcc
Confidence 565 9999999 444443211 000 01111112222344555133349999963
No 424
>KOG2423|consensus
Probab=25.19 E-value=2e+02 Score=25.17 Aligned_cols=53 Identities=9% Similarity=-0.036 Sum_probs=32.1
Q ss_pred hhhhhhc---CCcEEEEEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCC
Q psy15036 100 LTTGLYR---GTMGFLLIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQR 160 (179)
Q Consensus 100 ~~~~~~~---~~~~vilvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~ 160 (179)
++...|+ .+|++|=|.|..++---. +...-+.+++..+.+ -.|+|-|||||..
T Consensus 203 IW~ELyKViDSSDVvvqVlDARDPmGTr-c~~ve~ylkke~phK-------Hli~vLNKvDLVP 258 (572)
T KOG2423|consen 203 IWGELYKVIDSSDVVVQVLDARDPMGTR-CKHVEEYLKKEKPHK-------HLIYVLNKVDLVP 258 (572)
T ss_pred HHHHHHHhhcccceeEEeeeccCCcccc-cHHHHHHHhhcCCcc-------eeEEEeecccccc
Confidence 4444444 689999999988873321 122222344445543 4667789999953
No 425
>TIGR01624 LRP1_Cterm LRP1 C-terminal domain. This model represents a tightly conserved small domain found in LRP1 and related plant proteins. This family also contains a well-conserved putative zinc finger domain (TIGR01623). The rest of the sequence of most members consists of highly divergent, low-complexity sequence.
Probab=24.97 E-value=69 Score=18.85 Aligned_cols=26 Identities=12% Similarity=0.487 Sum_probs=17.9
Q ss_pred eccccccccccccccccccCceeeEE
Q psy15036 21 FGKPTYRCTKVTKMTAAKEFSFNFGT 46 (179)
Q Consensus 21 ~~~~~~~~~~~~~m~~~~~~~~~~Ki 46 (179)
...-.|||.....+...++.++-+.-
T Consensus 7 ~s~AvFrcvRvs~idd~~~~e~aYQt 32 (50)
T TIGR01624 7 SAPAVFKCVRVTAIDDGEQAEYAYQA 32 (50)
T ss_pred ccceEEEEEEEeccCCCCCceEEEEE
Confidence 34557899999888877654555554
No 426
>CHL00175 minD septum-site determining protein; Validated
Probab=24.00 E-value=3.6e+02 Score=21.24 Aligned_cols=59 Identities=5% Similarity=-0.152 Sum_probs=37.3
Q ss_pred eeCCCchhchhhhhhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCc
Q psy15036 89 FRFPLVSRFLSLTTGLYRGTMGFLLIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELL 158 (179)
Q Consensus 89 wDt~G~e~~~~~~~~~~~~~~~vilvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl 158 (179)
.|+++.-. ......+..+|.+++|.+. +..|...+...++.+.+.... .+-+|.|+.+.
T Consensus 132 iDtpp~~~--~~~~~~l~~aD~viiV~~p-~~~si~~~~~~~~~l~~~~~~--------~~~lvvN~~~~ 190 (281)
T CHL00175 132 IDCPAGID--VGFINAIAPAQEAIVVTTP-EITAIRDADRVAGLLEANGIY--------NVKLLVNRVRP 190 (281)
T ss_pred EeCCCCCC--HHHHHHHHhcCeeEEEcCC-ChHHHHHHHHHHHHHHHcCCC--------ceEEEEeccCh
Confidence 78886532 2334456778999998874 456777777777666653322 23456688875
No 427
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=23.88 E-value=2e+02 Score=25.54 Aligned_cols=57 Identities=12% Similarity=0.133 Sum_probs=39.3
Q ss_pred CchhchhhhhhhhcCCcEEEEEEe-CCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCC
Q psy15036 93 LVSRFLSLTTGLYRGTMGFLLIFD-VTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLEL 157 (179)
Q Consensus 93 G~e~~~~~~~~~~~~~~~vilvyD-it~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~D 157 (179)
|....-.+.+..|++++.+|| | .|.-=+..+++..+..+++..... .-||++-+|.+
T Consensus 144 G~qQRVEIlKaLyr~a~iLIL--DEPTaVLTP~E~~~lf~~l~~l~~~G------~tIi~ITHKL~ 201 (501)
T COG3845 144 GEQQRVEILKALYRGARLLIL--DEPTAVLTPQEADELFEILRRLAAEG------KTIIFITHKLK 201 (501)
T ss_pred chhHHHHHHHHHhcCCCEEEE--cCCcccCCHHHHHHHHHHHHHHHHCC------CEEEEEeccHH
Confidence 444445678889999997766 3 333345778888888888776665 46777788864
No 428
>cd07388 MPP_Tt1561 Thermus thermophilus Tt1561 and related proteins, metallophosphatase domain. This family includes bacterial proteins related to Tt1561 (also known as Aq1956 in Aquifex aeolicus), an uncharacterized Thermus thermophilus protein. The conserved domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets,
Probab=23.43 E-value=1.8e+02 Score=22.73 Aligned_cols=45 Identities=13% Similarity=0.052 Sum_probs=28.1
Q ss_pred eCCCchh-chhhhhhhh--cCCcEEEEEEeCCChh-hHHHHHHHHHHHHH
Q psy15036 90 RFPLVSR-FLSLTTGLY--RGTMGFLLIFDVTNEN-SFKDVEKWLLQIKV 135 (179)
Q Consensus 90 Dt~G~e~-~~~~~~~~~--~~~~~vilvyDit~~~-Sf~~l~~w~~~i~~ 135 (179)
|+.|... ...+.. .. .++|.+|++=|+++.. .-+.+..+++.+.+
T Consensus 12 DiHgn~~~le~l~~-~~~~~~~D~vv~~GDl~~~g~~~~~~~~~l~~l~~ 60 (224)
T cd07388 12 NPKGDLEALEKLVG-LAPETGADAIVLIGNLLPKAAKSEDYAAFFRILGE 60 (224)
T ss_pred ecCCCHHHHHHHHH-HHhhcCCCEEEECCCCCCCCCCHHHHHHHHHHHHh
Confidence 7777532 222222 33 4799999999999976 35555556555543
No 429
>PF12327 FtsZ_C: FtsZ family, C-terminal domain; InterPro: IPR024757 The FtsZ family of proteins are involved in polymer formation. FtsZ is the polymer-forming protein of bacterial cell division. It is part of a ring in the middle of the dividing cell that is required for constriction of cell membrane and cell envelope to yield two daughter cells. FtsZ is a GTPase, like tubulin []. FtsZ can polymerise into tubes, sheets, and rings in vitro and is ubiquitous in eubacteria and archaea []. This entry represents a domain of FtsZ. In most FtsZ proteins is found in the C terminus, except in some alphaproteobacteria proteins where there is an extension C-terminal domain TIGR03483 from TIGRFAMs.; PDB: 2RHO_B 2RHJ_A 2VXY_A 2RHL_B 2RHH_A 2VAM_A 1W5F_B 2R75_1 2R6R_1 1RQ7_A ....
Probab=23.39 E-value=2.3e+02 Score=18.78 Aligned_cols=49 Identities=14% Similarity=0.080 Sum_probs=33.5
Q ss_pred hhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCC
Q psy15036 102 TGLYRGTMGFLLIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLEL 157 (179)
Q Consensus 102 ~~~~~~~~~vilvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~D 157 (179)
..-++++.++++-+.....-++.++..-.+.+++...++ .-+ +.|...|
T Consensus 30 ~~~i~~A~~vLvni~~~~d~~l~ev~~~~~~i~~~~~~~------a~i-i~G~~id 78 (95)
T PF12327_consen 30 DVDIKGAKGVLVNITGGPDLSLSEVNEAMEIIREKADPD------ANI-IWGASID 78 (95)
T ss_dssp TS-GGG-SEEEEEEEE-TTS-HHHHHHHHHHHHHHSSTT------SEE-EEEEEE-
T ss_pred cCChHHhceEEEEEEcCCCCCHHHHHHHHHHHHHHhhcC------ceE-EEEEEEC
Confidence 356788999999887776789999999999999887765 334 4466555
No 430
>PF06953 ArsD: Arsenical resistance operon trans-acting repressor ArsD; InterPro: IPR010712 This family consists of several bacterial arsenical resistance operon trans-acting repressor ArsD proteins. ArsD is a trans-acting repressor of the arsRDABC operon that confers resistance to arsenicals and antimonials in Escherichia coli. It possesses two-pairs of vicinal cysteine residues, Cys(12)-Cys(13) and Cys(112)-Cys(113), that potentially form separate binding sites for the metalloids that trigger dissociation of ArsD from the operon. However, as a homodimer it has four vicinal cysteine pairs [].; GO: 0003677 DNA binding, 0045892 negative regulation of transcription, DNA-dependent, 0046685 response to arsenic-containing substance; PDB: 3MWH_A 3KGK_A 3KTB_B.
Probab=23.22 E-value=1.5e+02 Score=20.97 Aligned_cols=63 Identities=3% Similarity=-0.078 Sum_probs=38.0
Q ss_pred hcCCcEEEEEEeCCC-hhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCCCCCCCHHHHHHHHh
Q psy15036 105 YRGTMGFLLIFDVTN-ENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQRCREVVTPDQIMFGS 174 (179)
Q Consensus 105 ~~~~~~vilvyDit~-~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~~r~Vs~~e~~~~a~ 174 (179)
+++..+-|-.|.+++ ++.|.+-..-.+.+.+...+. .|++||-.+.=+. .|--+.+|..+|+.
T Consensus 36 Lk~~gv~v~RyNL~~~P~aF~~n~~V~~~L~~~G~e~------LPitlVdGeiv~~-G~YPt~eEl~~~~~ 99 (123)
T PF06953_consen 36 LKEQGVEVERYNLAQNPQAFVENPEVNQLLQTEGAEA------LPITLVDGEIVKT-GRYPTNEELAEWLG 99 (123)
T ss_dssp HHHTT-EEEEEETTT-TTHHHHSHHHHHHHHHH-GGG-------SEEEETTEEEEE-SS---HHHHHHHHT
T ss_pred HHhCCceEEEEccccCHHHHHhCHHHHHHHHHcCccc------CCEEEECCEEEEe-cCCCCHHHHHHHhC
Confidence 355577788899876 678887666666666555544 7888875554333 36677788877754
No 431
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=23.21 E-value=1.9e+02 Score=20.66 Aligned_cols=40 Identities=8% Similarity=-0.031 Sum_probs=26.5
Q ss_pred CCcEEEEEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEee
Q psy15036 107 GTMGFLLIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGC 154 (179)
Q Consensus 107 ~~~~vilvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGn 154 (179)
+++++.+ +.....+...+.++++.+++....+ +++++.|+
T Consensus 54 ~~d~V~l--S~~~~~~~~~~~~~~~~L~~~~~~~------~~i~vGG~ 93 (137)
T PRK02261 54 DADAILV--SSLYGHGEIDCRGLREKCIEAGLGD------ILLYVGGN 93 (137)
T ss_pred CCCEEEE--cCccccCHHHHHHHHHHHHhcCCCC------CeEEEECC
Confidence 4565555 5455577888899999998775544 55555553
No 432
>PRK04017 hypothetical protein; Provisional
Probab=23.09 E-value=1.5e+02 Score=21.39 Aligned_cols=33 Identities=9% Similarity=0.106 Sum_probs=24.7
Q ss_pred hhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcC
Q psy15036 120 ENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQ 159 (179)
Q Consensus 120 ~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~ 159 (179)
++.|+.+..|++++++.+... .+|+|--|.|..
T Consensus 3 ~~~~~~~~e~i~~L~e~s~~g-------~vIVVEGk~D~~ 35 (132)
T PRK04017 3 RENYERFEEIIEELKEFSEAG-------APIIVEGKRDVE 35 (132)
T ss_pred HHHHHHHHHHHHHHHHhcCCC-------CEEEEeCccHHH
Confidence 456889999999999888764 456666677753
No 433
>KOG0461|consensus
Probab=23.00 E-value=1.9e+02 Score=24.84 Aligned_cols=29 Identities=21% Similarity=0.285 Sum_probs=20.1
Q ss_pred eeCCCchhchhhhhhhhcCC---cEEEEEEeCCCh
Q psy15036 89 FRFPLVSRFLSLTTGLYRGT---MGFLLIFDVTNE 120 (179)
Q Consensus 89 wDt~G~e~~~~~~~~~~~~~---~~vilvyDit~~ 120 (179)
.|++|+.. +.+..+-++ |..++|.|++.-
T Consensus 75 vDCPGHas---LIRtiiggaqiiDlm~lviDv~kG 106 (522)
T KOG0461|consen 75 VDCPGHAS---LIRTIIGGAQIIDLMILVIDVQKG 106 (522)
T ss_pred EeCCCcHH---HHHHHHhhhheeeeeeEEEehhcc
Confidence 89999864 445555554 666788898763
No 434
>PF00846 Hanta_nucleocap: Hantavirus nucleocapsid protein; InterPro: IPR002214 Hantaviruses are ssRNA negative-strand viruses. The nucleocapsid protein is an internal protein of the virus particle [, ].; GO: 0019013 viral nucleocapsid; PDB: 2IC9_A 2IC6_A 2K48_A 4FI5_A.
Probab=21.82 E-value=30 Score=29.47 Aligned_cols=25 Identities=24% Similarity=0.575 Sum_probs=0.0
Q ss_pred eeccCCCCceeEEeccccccccccc
Q psy15036 8 MFADSRPESTFWIFGKPTYRCTKVT 32 (179)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~ 32 (179)
.+.+--+|+.+|||++-+.||-+..
T Consensus 294 lpd~IeSP~siWVFAgAPDRCPPT~ 318 (428)
T PF00846_consen 294 LPDDIESPSSIWVFAGAPDRCPPTC 318 (428)
T ss_dssp -------------------------
T ss_pred CCcccCCCCCceeecCCCCCCCcce
Confidence 4455668999999999999996543
No 435
>TIGR01007 eps_fam capsular exopolysaccharide family. This model describes the capsular exopolysaccharide proteins in bacteria. The exopolysaccharide gene cluster consists of several genes which encode a number of proteins which regulate the exoploysaccharide biosynthesis(EPS). Atleast 13 genes espA to espM in streptococcus species seem to direct the EPS proteins and all of which share high homology. Functional roles were characterized by gene disruption experiments which resulted in exopolysaccharide-deficient phenotypes.
Probab=21.75 E-value=3.4e+02 Score=20.14 Aligned_cols=62 Identities=15% Similarity=0.050 Sum_probs=37.3
Q ss_pred eeCCCchhchhhhhhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCC
Q psy15036 89 FRFPLVSRFLSLTTGLYRGTMGFLLIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQR 160 (179)
Q Consensus 89 wDt~G~e~~~~~~~~~~~~~~~vilvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~ 160 (179)
.|++..... .......+.+|++|+|.+. +..+...+..-++.+++... +.+-+|-||.|...
T Consensus 133 iD~pp~~~~-~~~~~~~~~~D~vilV~~~-~~~~~~~~~~~~~~l~~~~~--------~~~gvVlN~~~~~~ 194 (204)
T TIGR01007 133 IDTPPIGTV-TDAAIIARACDASILVTDA-GEIKKRDVQKAKEQLEQTGS--------NFLGVVLNKVDISV 194 (204)
T ss_pred EeCCCcccc-chHHHHHHhCCeEEEEEEC-CCCCHHHHHHHHHHHHhCCC--------CEEEEEEeCccccc
Confidence 677752111 1123456779999999976 34466666666666654322 35556779998643
No 436
>PRK13185 chlL protochlorophyllide reductase iron-sulfur ATP-binding protein; Provisional
Probab=21.62 E-value=4e+02 Score=20.83 Aligned_cols=63 Identities=6% Similarity=-0.109 Sum_probs=36.6
Q ss_pred eeCCCchhchhhhhhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCC
Q psy15036 89 FRFPLVSRFLSLTTGLYRGTMGFLLIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLEL 157 (179)
Q Consensus 89 wDt~G~e~~~~~~~~~~~~~~~vilvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~D 157 (179)
.||+|.-.... ....+..+|.+|++... +..++..+...++.+.+..... +.+..-+|.|+.+
T Consensus 123 IDt~g~~~~~~-~~~~l~~AD~viip~~~-~~~sl~~~~~~~~~i~~~~~~~----~l~i~giv~N~~~ 185 (270)
T PRK13185 123 FDVLGDVVCGG-FAAPLQYADYALIVTAN-DFDSIFAANRIAAAIQAKAKNY----KVRLAGVIANRSA 185 (270)
T ss_pred EecCCCcccCc-ccchhhhCcEEEEEecC-chhhHHHHHHHHHHHHhhhhcc----CCCceEEEEeccC
Confidence 89876532211 22346778999998854 6677777777666665432111 1123336678866
No 437
>TIGR02370 pyl_corrinoid methyltransferase cognate corrinoid proteins, Methanosarcina family. This model describes a subfamily of the B12 binding domain (pfam02607, pfam02310) proteins. Members of the seed alignment include corrinoid proteins specific to four different, mutally non-homologous enzymes of the genus Methanosarcina. Three of the four cognate enzymes (trimethylamine, dimethylamine, and monomethylamine methyltransferases) all have the unusual, ribosomally incorporated amino acid pyrrolysine at the active site. All act in systems in which a methyl group is transferred to the corrinoid protein to create methylcobalamin, from which the methyl group is later transferred elsewhere.
Probab=21.46 E-value=2e+02 Score=21.79 Aligned_cols=40 Identities=8% Similarity=-0.095 Sum_probs=26.6
Q ss_pred cEEEEEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEe
Q psy15036 109 MGFLLIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRG 153 (179)
Q Consensus 109 ~~vilvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvG 153 (179)
+.=+++.+.+...+...+..+++.+++....+ .+++++-|
T Consensus 135 ~pd~v~lS~~~~~~~~~~~~~i~~l~~~~~~~-----~v~i~vGG 174 (197)
T TIGR02370 135 KPLMLTGSALMTTTMYGQKDINDKLKEEGYRD-----SVKFMVGG 174 (197)
T ss_pred CCCEEEEccccccCHHHHHHHHHHHHHcCCCC-----CCEEEEEC
Confidence 33355556677778888999999999875432 14555545
No 438
>PRK10818 cell division inhibitor MinD; Provisional
Probab=21.13 E-value=4.1e+02 Score=20.74 Aligned_cols=44 Identities=9% Similarity=-0.097 Sum_probs=31.1
Q ss_pred eeCCCchhchhhhhhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHH
Q psy15036 89 FRFPLVSRFLSLTTGLYRGTMGFLLIFDVTNENSFKDVEKWLLQIKV 135 (179)
Q Consensus 89 wDt~G~e~~~~~~~~~~~~~~~vilvyDit~~~Sf~~l~~w~~~i~~ 135 (179)
.|+++.-.. .....+..+|.++++.+.+ ..++..+...++.+..
T Consensus 119 iD~p~~~~~--~~~~~l~~ad~vivv~~p~-~~sl~~~~~~l~~i~~ 162 (270)
T PRK10818 119 CDSPAGIET--GALMALYFADEAIITTNPE-VSSVRDSDRILGILAS 162 (270)
T ss_pred EeCCCCccH--HHHHHHHhCCeEEEEcCCC-chHHHhHHHHHHHHHH
Confidence 788766533 3344568899999998754 5677777777777664
No 439
>KOG2052|consensus
Probab=20.63 E-value=61 Score=28.44 Aligned_cols=42 Identities=21% Similarity=0.192 Sum_probs=35.2
Q ss_pred eCCCchhchhhhhhhhcCCcEEEEEEeCCChhhHHHHHHHHH
Q psy15036 90 RFPLVSRFLSLTTGLYRGTMGFLLIFDVTNENSFKDVEKWLL 131 (179)
Q Consensus 90 Dt~G~e~~~~~~~~~~~~~~~vilvyDit~~~Sf~~l~~w~~ 131 (179)
.+-|+.||...++.-+|+-++++=+|..+++.|+-+=.+.++
T Consensus 217 e~IGkGRyGEVwrG~wrGe~VAVKiF~srdE~SWfrEtEIYq 258 (513)
T KOG2052|consen 217 EIIGKGRFGEVWRGRWRGEDVAVKIFSSRDERSWFRETEIYQ 258 (513)
T ss_pred EEecCccccceeeccccCCceEEEEecccchhhhhhHHHHHH
Confidence 678899999999999999999999999999999655443333
No 440
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=20.38 E-value=87 Score=25.65 Aligned_cols=25 Identities=12% Similarity=0.173 Sum_probs=14.8
Q ss_pred EeCCChhhHHHHHHHHHHHHHHhCC
Q psy15036 115 FDVTNENSFKDVEKWLLQIKVMDGA 139 (179)
Q Consensus 115 yDit~~~Sf~~l~~w~~~i~~~~~~ 139 (179)
|.--|+-+=..++.-+..+.+....
T Consensus 163 FgALDpI~R~~lQ~e~~~lq~~l~k 187 (309)
T COG1125 163 FGALDPITRKQLQEEIKELQKELGK 187 (309)
T ss_pred ccccChhhHHHHHHHHHHHHHHhCC
Confidence 4455555556666666666665554
No 441
>cd01844 SGNH_hydrolase_like_6 SGNH_hydrolase subfamily. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=20.28 E-value=3.4e+02 Score=19.54 Aligned_cols=42 Identities=0% Similarity=-0.119 Sum_probs=27.9
Q ss_pred CCcEEEEEEeCCCh----hhHHHHHHHHHHHHHHhCCccCccccceEEEEeeC
Q psy15036 107 GTMGFLLIFDVTNE----NSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCL 155 (179)
Q Consensus 107 ~~~~vilvyDit~~----~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK 155 (179)
..+.+++.+-.+|- +-.+++...++.+++..+. .++++++-.
T Consensus 57 ~pd~vii~~G~ND~~~~~~~~~~~~~~i~~i~~~~p~-------~~iil~~~~ 102 (177)
T cd01844 57 PADLYIIDCGPNIVGAEAMVRERLGPLVKGLRETHPD-------TPILLVSPR 102 (177)
T ss_pred CCCEEEEEeccCCCccHHHHHHHHHHHHHHHHHHCcC-------CCEEEEecC
Confidence 67888888755543 2356677778888776654 467777643
No 442
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=20.15 E-value=1.8e+02 Score=24.30 Aligned_cols=55 Identities=11% Similarity=-0.101 Sum_probs=31.5
Q ss_pred eeCCCchhchhhhhhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCC
Q psy15036 89 FRFPLVSRFLSLTTGLYRGTMGFLLIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQR 160 (179)
Q Consensus 89 wDt~G~e~~~~~~~~~~~~~~~vilvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~ 160 (179)
.||+|-..-. ......+|.++++.+....+....++ ..+.+. .-++|.||+|+..
T Consensus 154 ieT~Gv~qs~---~~i~~~aD~vlvv~~p~~gd~iq~~k---~gi~E~-----------aDIiVVNKaDl~~ 208 (332)
T PRK09435 154 VETVGVGQSE---TAVAGMVDFFLLLQLPGAGDELQGIK---KGIMEL-----------ADLIVINKADGDN 208 (332)
T ss_pred EECCCCccch---hHHHHhCCEEEEEecCCchHHHHHHH---hhhhhh-----------hheEEeehhcccc
Confidence 7888865222 12466799999996544444443322 222221 1257789999865
Done!