Query psy15036
Match_columns 179
No_of_seqs 177 out of 1462
Neff 8.4
Searched_HMMs 29240
Date Fri Aug 16 18:48:25 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15036.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/15036hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4dkx_A RAS-related protein RAB 100.0 6.3E-32 2.2E-36 209.6 13.1 130 42-178 12-150 (216)
2 2fu5_C RAS-related protein RAB 99.9 2.7E-25 9.2E-30 165.6 13.7 133 38-177 3-144 (183)
3 2hup_A RAS-related protein RAB 99.9 5.5E-25 1.9E-29 167.5 13.2 133 38-177 24-165 (201)
4 2ew1_A RAS-related protein RAB 99.9 1.5E-24 5.1E-29 165.6 13.7 133 38-177 21-162 (201)
5 2bcg_Y Protein YP2, GTP-bindin 99.9 8.9E-24 3E-28 160.6 14.8 132 39-177 4-144 (206)
6 2bme_A RAB4A, RAS-related prot 99.9 9.9E-24 3.4E-28 157.3 13.6 132 39-177 6-146 (186)
7 2a5j_A RAS-related protein RAB 99.9 1.1E-23 3.8E-28 158.5 13.6 133 38-177 16-157 (191)
8 2efe_B Small GTP-binding prote 99.9 2.6E-23 8.8E-28 154.2 15.3 137 34-177 3-148 (181)
9 2fg5_A RAB-22B, RAS-related pr 99.9 1.6E-23 5.4E-28 157.9 14.2 135 36-177 16-159 (192)
10 1z0f_A RAB14, member RAS oncog 99.9 1.8E-23 6.1E-28 154.5 13.9 133 38-177 10-151 (179)
11 1zbd_A Rabphilin-3A; G protein 99.9 2.6E-23 8.9E-28 157.6 15.1 132 39-177 4-144 (203)
12 3dz8_A RAS-related protein RAB 99.9 2.4E-24 8.2E-29 162.1 9.3 133 38-177 18-159 (191)
13 1z08_A RAS-related protein RAB 99.9 9.9E-24 3.4E-28 154.8 12.3 131 40-177 3-142 (170)
14 2gf9_A RAS-related protein RAB 99.9 2.1E-23 7.3E-28 156.5 14.2 134 37-177 16-158 (189)
15 3cbq_A GTP-binding protein REM 99.9 1.1E-23 3.7E-28 159.9 12.7 132 39-177 19-161 (195)
16 3tkl_A RAS-related protein RAB 99.9 2.7E-23 9.3E-28 156.1 14.8 133 38-177 11-152 (196)
17 3tw8_B RAS-related protein RAB 99.9 2.4E-23 8.1E-28 154.1 14.2 133 37-177 3-144 (181)
18 3q3j_B RHO-related GTP-binding 99.9 1.7E-23 5.8E-28 160.9 13.2 129 41-178 25-175 (214)
19 2hxs_A RAB-26, RAS-related pro 99.9 5.7E-24 2E-28 157.4 10.2 129 42-177 5-146 (178)
20 2g3y_A GTP-binding protein GEM 99.9 9.5E-24 3.3E-28 162.9 11.8 131 39-177 33-176 (211)
21 3c5c_A RAS-like protein 12; GD 99.9 2.5E-23 8.7E-28 156.4 13.1 128 41-177 19-158 (187)
22 1z0j_A RAB-22, RAS-related pro 99.9 6.7E-23 2.3E-27 150.2 14.9 131 40-177 3-142 (170)
23 2il1_A RAB12; G-protein, GDP, 99.9 1.7E-23 5.7E-28 157.9 11.8 143 24-175 9-160 (192)
24 3cpj_B GTP-binding protein YPT 99.9 1.9E-23 6.5E-28 161.2 12.2 132 39-177 9-149 (223)
25 2oil_A CATX-8, RAS-related pro 99.9 3.3E-23 1.1E-27 155.8 12.9 137 34-177 16-161 (193)
26 2o52_A RAS-related protein RAB 99.9 1.7E-23 5.8E-28 159.0 11.3 134 37-177 19-161 (200)
27 1gwn_A RHO-related GTP-binding 99.9 3.9E-23 1.3E-27 158.1 13.4 130 39-177 24-175 (205)
28 3kkq_A RAS-related protein M-R 99.9 5.5E-23 1.9E-27 153.0 13.6 132 39-177 14-154 (183)
29 1m7b_A RND3/RHOE small GTP-bin 99.9 5.8E-23 2E-27 153.7 13.5 128 41-177 5-154 (184)
30 1r2q_A RAS-related protein RAB 99.9 7.7E-23 2.6E-27 149.6 13.9 129 42-177 5-142 (170)
31 2yc2_C IFT27, small RAB-relate 99.9 4.2E-23 1.4E-27 156.3 12.3 129 42-177 19-164 (208)
32 3bc1_A RAS-related protein RAB 99.9 1E-22 3.6E-27 152.0 14.2 133 38-177 6-158 (195)
33 3t5g_A GTP-binding protein RHE 99.9 1.1E-22 3.8E-27 151.1 14.1 129 42-177 5-142 (181)
34 1z06_A RAS-related protein RAB 99.9 8.2E-23 2.8E-27 153.3 13.4 130 41-177 18-158 (189)
35 1ek0_A Protein (GTP-binding pr 99.9 1.6E-22 5.5E-27 147.9 14.3 128 43-177 3-142 (170)
36 2g6b_A RAS-related protein RAB 99.9 1.3E-22 4.5E-27 150.3 13.8 132 39-177 6-147 (180)
37 1z2a_A RAS-related protein RAB 99.9 7.4E-23 2.5E-27 149.7 12.1 129 41-177 3-140 (168)
38 1g16_A RAS-related protein SEC 99.9 1E-22 3.4E-27 149.2 12.8 128 42-177 2-138 (170)
39 3reg_A RHO-like small GTPase; 99.9 1.5E-22 5.3E-27 152.4 13.8 131 39-178 19-161 (194)
40 2f7s_A C25KG, RAS-related prot 99.9 3.9E-23 1.3E-27 158.3 9.8 134 37-177 19-172 (217)
41 2y8e_A RAB-protein 6, GH09086P 99.9 2.5E-22 8.6E-27 148.2 13.3 129 42-177 13-150 (179)
42 1wms_A RAB-9, RAB9, RAS-relate 99.9 4.5E-22 1.5E-26 147.0 14.6 132 40-175 4-144 (177)
43 2nzj_A GTP-binding protein REM 99.9 1.8E-22 6.2E-27 148.7 12.3 129 42-177 3-142 (175)
44 2atx_A Small GTP binding prote 99.9 3.3E-22 1.1E-26 150.4 13.8 128 41-177 16-165 (194)
45 2fn4_A P23, RAS-related protei 99.9 2.7E-22 9.3E-27 148.3 13.1 129 41-177 7-145 (181)
46 3l0i_B RAS-related protein RAB 99.9 1.8E-23 6E-28 158.5 6.3 133 38-177 28-169 (199)
47 3t1o_A Gliding protein MGLA; G 99.9 4.5E-23 1.5E-27 154.6 7.5 130 39-178 10-165 (198)
48 2iwr_A Centaurin gamma 1; ANK 99.9 3.6E-22 1.2E-26 148.0 12.1 124 42-176 6-140 (178)
49 2p5s_A RAS and EF-hand domain 99.9 1.6E-22 5.4E-27 153.2 10.4 130 41-177 26-170 (199)
50 3q72_A GTP-binding protein RAD 99.9 3.3E-22 1.1E-26 146.2 11.8 127 43-177 2-137 (166)
51 3q85_A GTP-binding protein REM 99.9 3E-22 1E-26 146.9 10.8 129 43-177 2-140 (169)
52 3cph_A RAS-related protein SEC 99.9 8.1E-22 2.8E-26 150.0 13.6 131 39-177 16-155 (213)
53 3ihw_A Centg3; RAS, centaurin, 99.9 6.3E-22 2.1E-26 148.7 12.5 122 42-177 19-152 (184)
54 1x3s_A RAS-related protein RAB 99.9 7.7E-22 2.6E-26 147.9 12.9 132 39-177 11-151 (195)
55 2cjw_A GTP-binding protein GEM 99.9 4.9E-22 1.7E-26 150.3 11.8 128 42-177 5-145 (192)
56 2q3h_A RAS homolog gene family 99.9 6.2E-22 2.1E-26 149.7 12.1 130 39-177 16-167 (201)
57 1c1y_A RAS-related protein RAP 99.9 9.1E-22 3.1E-26 143.7 12.4 127 43-176 3-138 (167)
58 1ky3_A GTP-binding protein YPT 99.9 4.2E-22 1.4E-26 147.4 10.7 133 40-175 5-148 (182)
59 1vg8_A RAS-related protein RAB 99.9 1.4E-21 4.8E-26 148.1 13.6 132 40-175 5-145 (207)
60 2j0v_A RAC-like GTP-binding pr 99.9 2.8E-22 9.4E-27 153.0 9.5 127 42-177 8-152 (212)
61 3oes_A GTPase rhebl1; small GT 99.9 8E-22 2.7E-26 149.5 12.0 129 42-177 23-160 (201)
62 1u8z_A RAS-related protein RAL 99.9 1.8E-21 6.3E-26 141.8 12.3 128 43-177 4-140 (168)
63 3clv_A RAB5 protein, putative; 99.9 5.6E-21 1.9E-25 143.4 14.5 127 41-177 5-177 (208)
64 1kao_A RAP2A; GTP-binding prot 99.9 3.2E-21 1.1E-25 140.4 12.6 128 43-177 3-139 (167)
65 2gco_A H9, RHO-related GTP-bin 99.9 3.5E-21 1.2E-25 146.1 13.3 127 42-177 24-172 (201)
66 4djt_A GTP-binding nuclear pro 99.9 4.1E-21 1.4E-25 147.1 13.6 131 41-177 9-148 (218)
67 2bov_A RAla, RAS-related prote 99.9 4.5E-21 1.5E-25 145.0 13.4 129 42-177 13-150 (206)
68 2zej_A Dardarin, leucine-rich 99.9 1.3E-22 4.4E-27 152.0 4.5 128 43-177 2-146 (184)
69 2a9k_A RAS-related protein RAL 99.9 4.6E-21 1.6E-25 142.4 12.4 129 42-177 17-154 (187)
70 2atv_A RERG, RAS-like estrogen 99.9 3.7E-21 1.3E-25 145.2 11.9 127 42-177 27-163 (196)
71 2j1l_A RHO-related GTP-binding 99.9 2.2E-21 7.4E-26 148.9 10.5 127 42-177 33-181 (214)
72 1mh1_A RAC1; GTP-binding, GTPa 99.9 4E-21 1.4E-25 142.8 11.6 127 42-177 4-152 (186)
73 2f9l_A RAB11B, member RAS onco 99.9 8.2E-21 2.8E-25 143.8 13.3 131 40-177 2-141 (199)
74 3gj0_A GTP-binding nuclear pro 99.9 2.1E-21 7.2E-26 149.2 10.1 128 39-176 11-147 (221)
75 3r7w_B Gtpase2, GTP-binding pr 99.9 3.5E-22 1.2E-26 163.1 6.0 120 45-175 1-142 (331)
76 4gzl_A RAS-related C3 botulinu 99.8 4.2E-21 1.4E-25 146.3 10.8 127 42-177 29-177 (204)
77 1oix_A RAS-related protein RAB 99.8 9.8E-21 3.3E-25 142.9 12.7 132 39-177 25-165 (191)
78 3bwd_D RAC-like GTP-binding pr 99.8 5.1E-22 1.7E-26 147.3 5.5 127 42-177 7-153 (182)
79 1f6b_A SAR1; gtpases, N-termin 99.8 5.6E-21 1.9E-25 145.0 10.5 122 43-175 25-153 (198)
80 2fv8_A H6, RHO-related GTP-bin 99.8 1.4E-20 4.8E-25 143.4 12.7 127 42-177 24-172 (207)
81 2erx_A GTP-binding protein DI- 99.8 1.1E-20 3.8E-25 138.3 11.4 129 43-177 3-140 (172)
82 4dsu_A GTPase KRAS, isoform 2B 99.8 4.9E-20 1.7E-24 137.2 14.0 128 42-177 3-139 (189)
83 1m2o_B GTP-binding protein SAR 99.8 2.2E-20 7.6E-25 140.7 11.9 122 43-175 23-151 (190)
84 3llu_A RAS-related GTP-binding 99.8 4.3E-21 1.5E-25 145.1 6.7 128 38-174 15-164 (196)
85 2ce2_X GTPase HRAS; signaling 99.8 1E-19 3.4E-24 132.1 13.4 127 43-177 3-138 (166)
86 2h57_A ADP-ribosylation factor 99.8 9.2E-20 3.1E-24 136.7 13.6 123 41-174 19-152 (190)
87 2gf0_A GTP-binding protein DI- 99.8 5.2E-20 1.8E-24 138.4 12.3 130 41-177 6-144 (199)
88 3con_A GTPase NRAS; structural 99.8 9.9E-20 3.4E-24 136.2 13.5 128 42-177 20-156 (190)
89 1fzq_A ADP-ribosylation factor 99.8 5.9E-20 2E-24 137.3 11.1 112 42-162 15-133 (181)
90 1r8s_A ADP-ribosylation factor 99.8 1.2E-19 4.2E-24 132.3 11.9 108 44-161 1-116 (164)
91 4bas_A ADP-ribosylation factor 99.8 1.6E-19 5.5E-24 135.7 12.1 120 39-161 13-142 (199)
92 1zj6_A ADP-ribosylation factor 99.8 1.6E-19 5.4E-24 135.1 11.3 120 42-173 15-142 (187)
93 1ksh_A ARF-like protein 2; sma 99.8 4E-19 1.4E-23 132.5 12.8 118 42-170 17-141 (186)
94 1upt_A ARL1, ADP-ribosylation 99.8 7.7E-20 2.6E-24 134.0 8.4 111 42-161 6-123 (171)
95 2h17_A ADP-ribosylation factor 99.8 2.3E-19 7.8E-24 133.7 10.4 122 40-172 18-146 (181)
96 2wkq_A NPH1-1, RAS-related C3 99.8 2.8E-19 9.5E-24 144.6 11.6 128 41-177 153-302 (332)
97 1zd9_A ADP-ribosylation factor 99.8 9E-19 3.1E-23 131.3 12.4 110 42-160 21-138 (188)
98 3r7w_A Gtpase1, GTP-binding pr 99.8 3.1E-19 1.1E-23 144.6 10.0 127 43-177 3-152 (307)
99 2b6h_A ADP-ribosylation factor 99.8 5.9E-19 2E-23 133.1 10.9 111 42-161 28-145 (192)
100 3th5_A RAS-related C3 botulinu 99.7 8.4E-21 2.9E-25 144.0 0.0 127 42-177 29-177 (204)
101 1moz_A ARL1, ADP-ribosylation 99.8 6.1E-19 2.1E-23 130.8 9.2 120 42-172 17-143 (183)
102 2x77_A ADP-ribosylation factor 99.8 9.2E-19 3.2E-23 131.0 10.0 111 42-161 21-138 (189)
103 3c5h_A Glucocorticoid receptor 99.8 4E-20 1.4E-24 146.1 0.1 128 39-175 15-225 (255)
104 3lvq_E ARF-GAP with SH3 domain 99.7 3.3E-17 1.1E-21 140.3 13.2 111 41-160 320-437 (497)
105 1nrj_B SR-beta, signal recogni 99.7 6.2E-18 2.1E-22 129.2 7.2 122 40-175 9-155 (218)
106 2fh5_B SR-beta, signal recogni 99.7 1.4E-17 4.9E-22 126.9 7.4 112 42-163 6-132 (214)
107 3o47_A ADP-ribosylation factor 99.7 4.4E-17 1.5E-21 133.3 9.7 112 42-162 164-282 (329)
108 2wji_A Ferrous iron transport 99.7 3.5E-17 1.2E-21 120.3 7.6 121 43-177 3-138 (165)
109 3dpu_A RAB family protein; roc 99.7 8.7E-17 3E-21 139.1 7.1 127 41-177 39-181 (535)
110 2lkc_A Translation initiation 99.7 2.1E-16 7.1E-21 116.4 7.6 105 42-160 7-121 (178)
111 2ged_A SR-beta, signal recogni 99.7 2.8E-16 9.6E-21 117.6 8.4 110 41-164 46-174 (193)
112 1u0l_A Probable GTPase ENGC; p 99.6 3.9E-16 1.3E-20 126.2 8.3 108 55-177 34-144 (301)
113 1azs_C GS-alpha; complex (lyas 99.6 4.1E-16 1.4E-20 130.6 8.0 92 63-163 186-301 (402)
114 2wjg_A FEOB, ferrous iron tran 99.6 2.6E-16 8.8E-21 117.2 5.3 121 43-177 7-142 (188)
115 2cxx_A Probable GTP-binding pr 99.6 2.3E-16 7.9E-21 117.4 4.9 122 44-177 2-150 (190)
116 2qu8_A Putative nucleolar GTP- 99.6 1.5E-15 5E-20 117.3 9.2 126 42-176 28-175 (228)
117 1cip_A Protein (guanine nucleo 99.6 9.5E-16 3.3E-20 126.5 7.7 98 69-175 179-304 (353)
118 2gj8_A MNME, tRNA modification 99.6 9.1E-16 3.1E-20 113.7 5.9 110 43-160 4-129 (172)
119 2xtz_A Guanine nucleotide-bind 99.6 2.4E-16 8.3E-21 130.1 2.6 99 57-162 140-266 (354)
120 4fid_A G protein alpha subunit 99.6 1.6E-15 5.5E-20 124.4 6.9 101 67-176 145-273 (340)
121 3ohm_A Guanine nucleotide-bind 99.6 3E-15 1E-19 122.3 8.1 99 67-174 151-278 (327)
122 1svi_A GTP-binding protein YSX 99.6 4E-15 1.4E-19 111.3 7.2 113 41-166 21-154 (195)
123 1zcb_A G alpha I/13; GTP-bindi 99.6 4.4E-15 1.5E-19 123.0 7.1 96 70-174 188-312 (362)
124 3pqc_A Probable GTP-binding pr 99.5 1E-14 3.4E-19 108.7 7.6 122 41-175 21-164 (195)
125 2dyk_A GTP-binding protein; GT 99.5 9.7E-15 3.3E-19 105.6 5.8 107 44-161 2-123 (161)
126 3a1s_A Iron(II) transport prot 99.5 4.6E-14 1.6E-18 111.6 6.8 122 42-177 4-140 (258)
127 2hjg_A GTP-binding protein ENG 99.4 7E-14 2.4E-18 118.1 6.0 120 42-172 174-312 (436)
128 3def_A T7I23.11 protein; chlor 99.4 6.2E-13 2.1E-17 105.0 9.9 121 42-169 35-174 (262)
129 3lxx_A GTPase IMAP family memb 99.4 3.8E-13 1.3E-17 104.5 7.9 130 41-177 27-182 (239)
130 3b1v_A Ferrous iron uptake tra 99.4 1.4E-13 4.9E-18 109.7 5.5 120 42-177 2-137 (272)
131 4dcu_A GTP-binding protein ENG 99.4 2.2E-13 7.4E-18 115.7 6.9 125 41-176 193-336 (456)
132 3iby_A Ferrous iron transport 99.4 8.8E-14 3E-18 109.9 3.9 118 45-176 3-139 (256)
133 3k53_A Ferrous iron transport 99.4 2.3E-13 7.8E-18 108.0 6.0 122 43-177 3-139 (271)
134 3i8s_A Ferrous iron transport 99.4 2.8E-13 9.7E-18 107.8 5.8 120 43-176 3-141 (274)
135 3qq5_A Small GTP-binding prote 99.4 8.4E-13 2.9E-17 111.3 9.0 122 40-176 31-168 (423)
136 3gee_A MNME, tRNA modification 99.4 4.7E-13 1.6E-17 114.4 6.9 113 43-164 233-361 (476)
137 3iev_A GTP-binding protein ERA 99.4 1.6E-12 5.5E-17 105.1 8.3 124 42-176 9-152 (308)
138 2xtp_A GTPase IMAP family memb 99.3 4.4E-12 1.5E-16 99.6 10.1 113 42-160 21-153 (260)
139 1wf3_A GTP-binding protein; GT 99.3 1.1E-11 3.7E-16 100.1 8.8 110 42-162 6-133 (301)
140 1h65_A Chloroplast outer envel 99.3 1.1E-11 3.8E-16 98.1 8.3 121 42-168 38-176 (270)
141 2qag_A Septin-2, protein NEDD5 99.3 6.4E-13 2.2E-17 109.8 1.1 125 41-176 35-206 (361)
142 3p26_A Elongation factor 1 alp 99.3 1.6E-11 5.3E-16 105.0 9.2 88 78-173 104-198 (483)
143 1mky_A Probable GTP-binding pr 99.2 1.5E-11 5.2E-16 103.9 8.4 105 45-160 3-124 (439)
144 1jny_A EF-1-alpha, elongation 99.2 2.7E-12 9.3E-17 108.4 3.5 96 79-177 78-181 (435)
145 1lnz_A SPO0B-associated GTP-bi 99.2 1.2E-11 4.2E-16 101.5 7.3 121 45-176 160-300 (342)
146 2e87_A Hypothetical protein PH 99.2 3.8E-11 1.3E-15 98.8 9.8 122 42-175 166-307 (357)
147 2hjg_A GTP-binding protein ENG 99.2 5.9E-12 2E-16 106.3 5.0 107 44-161 4-126 (436)
148 1xzp_A Probable tRNA modificat 99.2 1.7E-11 5.8E-16 104.9 7.1 115 44-174 244-376 (482)
149 3j2k_7 ERF3, eukaryotic polype 99.2 1.8E-11 6.1E-16 103.6 7.1 84 70-159 80-168 (439)
150 4dhe_A Probable GTP-binding pr 99.2 7E-12 2.4E-16 95.6 3.9 112 41-163 27-161 (223)
151 3lxw_A GTPase IMAP family memb 99.2 1.1E-10 3.7E-15 91.5 9.1 113 42-160 20-153 (247)
152 3izq_1 HBS1P, elongation facto 99.1 4.6E-11 1.6E-15 104.9 6.1 82 78-165 238-324 (611)
153 1mky_A Probable GTP-binding pr 99.1 1.5E-10 5E-15 97.8 8.9 118 42-170 179-316 (439)
154 1s0u_A EIF-2-gamma, translatio 99.1 5.1E-10 1.8E-14 93.7 11.9 122 42-175 7-166 (408)
155 3geh_A MNME, tRNA modification 99.1 4.5E-11 1.5E-15 101.8 5.2 109 43-164 224-348 (462)
156 1r5b_A Eukaryotic peptide chai 99.1 1.3E-11 4.4E-16 105.3 1.6 101 68-176 106-217 (467)
157 3tr5_A RF-3, peptide chain rel 99.1 7.1E-11 2.4E-15 102.1 6.0 72 78-160 75-148 (528)
158 3izy_P Translation initiation 99.1 5.4E-12 1.8E-16 109.2 -1.3 108 43-160 4-118 (537)
159 1zun_B Sulfate adenylate trans 99.1 3.8E-10 1.3E-14 95.2 9.3 88 80-177 99-192 (434)
160 4dcu_A GTP-binding protein ENG 99.1 7.5E-11 2.6E-15 100.1 4.6 107 43-160 23-145 (456)
161 3cb4_D GTP-binding protein LEP 99.0 4.6E-10 1.6E-14 98.3 8.8 75 89-175 76-150 (599)
162 3t5d_A Septin-7; GTP-binding p 99.0 4.8E-10 1.6E-14 88.9 8.1 108 42-160 7-158 (274)
163 2qtf_A Protein HFLX, GTP-bindi 99.0 6E-10 2E-14 92.2 8.8 108 44-161 179-307 (364)
164 2elf_A Protein translation elo 99.0 1.7E-10 5.8E-15 95.7 5.1 112 45-175 23-143 (370)
165 2c78_A Elongation factor TU-A; 99.0 4.8E-10 1.6E-14 93.7 7.6 125 42-176 10-161 (405)
166 3sjy_A Translation initiation 99.0 9.9E-10 3.4E-14 91.8 9.3 64 89-160 80-143 (403)
167 1d2e_A Elongation factor TU (E 99.0 7.1E-10 2.4E-14 92.5 8.4 123 43-177 3-153 (397)
168 1f60_A Elongation factor EEF1A 99.0 6.2E-11 2.1E-15 100.8 1.2 97 69-176 71-179 (458)
169 1g7s_A Translation initiation 99.0 1.7E-10 5.9E-15 101.0 3.5 104 43-160 5-136 (594)
170 1pui_A ENGB, probable GTP-bind 99.0 1.3E-09 4.3E-14 82.2 7.7 121 42-175 25-168 (210)
171 1wb1_A Translation elongation 99.0 7.6E-10 2.6E-14 94.6 7.1 118 42-175 18-156 (482)
172 1kk1_A EIF2gamma; initiation o 99.0 2.5E-09 8.6E-14 89.5 9.7 123 41-175 8-168 (410)
173 1dar_A EF-G, elongation factor 99.0 3.1E-09 1.1E-13 94.5 10.4 110 38-160 7-143 (691)
174 1zo1_I IF2, translation initia 98.9 2.5E-10 8.4E-15 98.1 3.1 104 43-160 4-117 (501)
175 2ywe_A GTP-binding protein LEP 98.9 1.8E-09 6.3E-14 94.5 8.4 63 89-161 78-140 (600)
176 2yv5_A YJEQ protein; hydrolase 98.9 1.2E-09 4.2E-14 88.0 6.8 76 92-176 64-141 (302)
177 1n0u_A EF-2, elongation factor 98.9 1.9E-09 6.6E-14 97.8 7.9 71 89-169 103-174 (842)
178 1ega_A Protein (GTP-binding pr 98.9 2.2E-09 7.4E-14 86.5 5.8 119 43-175 8-145 (301)
179 3avx_A Elongation factor TS, e 98.9 1.7E-09 5.9E-14 100.2 5.8 125 42-176 295-445 (1289)
180 3t34_A Dynamin-related protein 98.8 4.7E-09 1.6E-13 86.3 6.0 74 89-170 141-227 (360)
181 2aka_B Dynamin-1; fusion prote 98.8 8.7E-09 3E-13 81.9 7.0 68 89-165 130-211 (299)
182 2rdo_7 EF-G, elongation factor 98.8 2.8E-08 9.5E-13 88.6 10.9 62 89-160 87-148 (704)
183 2xex_A Elongation factor G; GT 98.8 1E-08 3.6E-13 91.2 7.8 107 41-160 8-141 (693)
184 2h5e_A Peptide chain release f 98.8 2.9E-08 1E-12 85.8 10.3 71 79-161 76-149 (529)
185 2qag_C Septin-7; cell cycle, c 98.8 5E-09 1.7E-13 88.1 4.7 126 41-177 29-200 (418)
186 2qnr_A Septin-2, protein NEDD5 98.8 1.4E-09 4.8E-14 87.6 1.1 127 41-177 16-188 (301)
187 3mca_A HBS1, elongation factor 98.7 9.9E-10 3.4E-14 96.2 -0.6 74 74-160 244-329 (592)
188 2dy1_A Elongation factor G; tr 98.7 4.4E-08 1.5E-12 86.8 9.0 75 89-176 79-153 (665)
189 2qpt_A EH domain-containing pr 98.7 9.5E-09 3.2E-13 89.2 3.9 64 89-161 159-233 (550)
190 2j69_A Bacterial dynamin-like 98.7 3.7E-08 1.3E-12 87.7 7.6 68 89-165 179-249 (695)
191 1jwy_B Dynamin A GTPase domain 98.6 1E-07 3.4E-12 76.4 7.0 66 89-163 136-215 (315)
192 2hf9_A Probable hydrogenase ni 98.4 3.7E-10 1.3E-14 86.3 -10.9 128 42-176 37-194 (226)
193 1jal_A YCHF protein; nucleotid 98.3 1.3E-06 4.4E-11 72.1 8.1 87 44-133 3-132 (363)
194 3l82_B F-box only protein 4; T 98.3 3.9E-07 1.3E-11 69.9 4.4 78 90-171 108-186 (227)
195 1wxq_A GTP-binding protein; st 98.3 7.1E-07 2.4E-11 74.5 6.0 45 89-133 76-138 (397)
196 2x2e_A Dynamin-1; nitration, h 98.3 8E-07 2.7E-11 72.8 6.0 67 89-163 135-214 (353)
197 3h2y_A GTPase family protein; 98.2 1.5E-06 5.1E-11 71.8 5.8 69 91-172 53-121 (368)
198 1udx_A The GTP-binding protein 98.2 2.4E-06 8.1E-11 71.8 6.8 106 47-160 162-283 (416)
199 3l2o_B F-box only protein 4; s 98.1 4E-06 1.4E-10 67.2 5.7 73 90-171 193-271 (312)
200 3ec1_A YQEH GTPase; atnos1, at 97.9 6.9E-06 2.4E-10 67.8 4.0 71 89-172 53-123 (369)
201 2wsm_A Hydrogenase expression/ 97.7 1.7E-05 5.9E-10 59.8 3.4 70 89-176 114-184 (221)
202 2dby_A GTP-binding protein; GD 97.7 7.8E-05 2.7E-09 61.5 7.5 31 89-119 74-111 (368)
203 2ohf_A Protein OLA1, GTP-bindi 97.6 2.4E-05 8.1E-10 65.2 2.0 80 43-125 22-134 (396)
204 1yrb_A ATP(GTP)binding protein 96.8 0.0026 8.8E-08 49.0 6.4 65 89-162 114-187 (262)
205 3vqt_A RF-3, peptide chain rel 96.7 0.0055 1.9E-07 53.0 8.1 72 78-160 93-166 (548)
206 1bif_A 6-phosphofructo-2-kinas 96.6 3.8E-05 1.3E-09 65.1 -5.5 93 43-137 39-149 (469)
207 1puj_A YLQF, conserved hypothe 96.4 0.0048 1.6E-07 48.8 5.6 55 92-160 7-64 (282)
208 4a9a_A Ribosome-interacting GT 96.1 0.016 5.5E-07 47.8 7.3 125 43-176 72-220 (376)
209 3zvr_A Dynamin-1; hydrolase, D 96.0 0.015 5.3E-07 52.2 7.5 65 89-162 155-233 (772)
210 4fn5_A EF-G 1, elongation fact 96.0 0.014 4.9E-07 51.9 7.3 62 89-160 90-151 (709)
211 3j25_A Tetracycline resistance 95.4 0.011 3.8E-07 52.0 4.0 70 80-160 62-133 (638)
212 3p32_A Probable GTPase RV1496/ 95.1 0.0047 1.6E-07 50.3 0.5 55 89-160 177-231 (355)
213 2p67_A LAO/AO transport system 95.0 0.0084 2.9E-07 48.5 1.8 55 89-160 154-208 (341)
214 1ni3_A YCHF GTPase, YCHF GTP-b 93.8 0.062 2.1E-06 44.5 4.5 76 43-119 20-127 (392)
215 2www_A Methylmalonic aciduria 93.6 0.076 2.6E-06 43.1 4.7 55 89-160 172-226 (349)
216 1t9h_A YLOQ, probable GTPase E 92.3 0.21 7.1E-06 40.0 5.4 55 98-161 77-132 (307)
217 3cnl_A YLQF, putative uncharac 91.8 0.036 1.2E-06 43.2 0.4 52 44-96 100-156 (262)
218 3cnl_A YLQF, putative uncharac 91.7 0.056 1.9E-06 42.1 1.4 45 100-160 14-60 (262)
219 3ec1_A YQEH GTPase; atnos1, at 87.0 0.059 2E-06 44.1 -1.8 106 44-160 163-288 (369)
220 2rcn_A Probable GTPase ENGC; Y 86.6 1.4 4.7E-05 36.0 6.1 48 104-160 127-174 (358)
221 1puj_A YLQF, conserved hypothe 85.1 0.35 1.2E-05 37.9 1.8 53 42-95 119-176 (282)
222 2qm8_A GTPase/ATPase; G protei 84.4 0.54 1.8E-05 37.8 2.7 34 85-121 147-182 (337)
223 3h2y_A GTPase family protein; 83.9 0.13 4.3E-06 42.1 -1.3 106 44-160 161-287 (368)
224 2qag_B Septin-6, protein NEDD5 78.9 7 0.00024 32.5 7.6 13 147-159 177-189 (427)
225 3ea0_A ATPase, para family; al 76.2 15 0.00053 26.9 8.3 72 89-171 124-195 (245)
226 4dzz_A Plasmid partitioning pr 75.4 9.6 0.00033 27.2 6.8 63 89-159 81-143 (206)
227 2kpo_A Rossmann 2X2 fold prote 70.2 3.7 0.00013 26.1 2.8 50 122-177 34-97 (110)
228 3k9g_A PF-32 protein; ssgcid, 60.0 37 0.0013 25.3 7.5 59 89-157 150-208 (267)
229 2j37_W Signal recognition part 56.3 28 0.00095 29.5 6.7 60 89-160 189-254 (504)
230 3kjh_A CO dehydrogenase/acetyl 52.5 63 0.0022 23.3 8.4 58 89-157 137-194 (254)
231 3cwq_A Para family chromosome 47.5 76 0.0026 22.8 7.5 60 89-159 73-133 (209)
232 1hyq_A MIND, cell division inh 40.7 1E+02 0.0034 22.7 7.1 60 89-159 116-175 (263)
233 3q9l_A Septum site-determining 40.3 63 0.0022 23.6 5.9 68 89-159 119-186 (260)
234 1g3q_A MIND ATPase, cell divis 39.7 1E+02 0.0035 22.1 8.8 61 89-160 117-177 (237)
235 3end_A Light-independent proto 38.2 1.3E+02 0.0044 22.8 9.3 62 89-157 162-224 (307)
236 1wcv_1 SOJ, segregation protei 34.8 1.3E+02 0.0045 22.1 6.9 62 89-159 117-182 (257)
237 2oze_A ORF delta'; para, walke 33.3 1.5E+02 0.0052 22.2 7.8 62 89-159 160-225 (298)
238 1zpw_X Hypothetical protein TT 30.2 60 0.0021 20.5 3.7 17 110-126 5-21 (90)
239 1uoz_A Putative cellulase; hyd 28.0 88 0.003 24.9 4.9 33 107-139 89-131 (315)
240 2ph1_A Nucleotide-binding prot 27.3 1.7E+02 0.0059 21.5 6.5 61 89-158 134-194 (262)
241 3rl5_A Metallophosphoesterase 25.9 31 0.0011 27.1 2.0 48 78-136 61-108 (296)
242 3exc_X Uncharacterized protein 25.6 87 0.003 19.9 3.8 14 109-122 4-17 (91)
243 1uf3_A Hypothetical protein TT 25.1 82 0.0028 22.3 4.1 41 107-155 32-73 (228)
244 1j8m_F SRP54, signal recogniti 24.6 1.2E+02 0.0041 23.4 5.2 60 89-160 186-253 (297)
245 2yvt_A Hypothetical protein AQ 24.1 1E+02 0.0035 22.4 4.6 18 106-123 31-48 (260)
246 3sop_A Neuronal-specific septi 24.1 2.2E+02 0.0074 21.5 6.5 13 42-54 1-14 (270)
247 3kgk_A Arsenical resistance op 23.6 1.3E+02 0.0043 20.0 4.3 62 106-174 37-99 (110)
248 2ivy_A Hypothetical protein SS 23.2 80 0.0027 20.4 3.3 14 110-123 4-17 (101)
249 1f5n_A Interferon-induced guan 22.5 39 0.0013 29.3 2.1 19 43-61 38-60 (592)
250 3ro3_B Minsc, peptide of prote 20.8 74 0.0025 14.6 1.9 13 123-135 7-19 (22)
251 3ktb_A Arsenical resistance op 20.3 1.1E+02 0.0038 20.1 3.5 62 105-173 39-101 (106)
No 1
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=99.97 E-value=6.3e-32 Score=209.59 Aligned_cols=130 Identities=22% Similarity=0.305 Sum_probs=109.3
Q ss_pred eeeEEE-EeCCCCc---eeEeee-ccCCCcccCcceeeeeEEEEEecCCCee----eeCCCchhchhhhhhhhcCCcEEE
Q psy15036 42 FNFGTQ-LGRRGIP---LLKHLK-YLGTGTHGKTVGIVFPAISVTYSIGPRY----FRFPLVSRFLSLTTGLYRGTMGFL 112 (179)
Q Consensus 42 ~~~Kiv-lG~~gvG---~~~~~~-~~~~~~~~~Ti~~~~~~k~v~~~~~~~i----wDt~G~e~~~~~~~~~~~~~~~vi 112 (179)
..|||+ ||++||| ++.++. +.|.+.|.||+|.++..+.+.++ +..+ |||+|+++|+.+++.||+++++++
T Consensus 12 k~~KivlvGd~~VGKTsLi~r~~~~~f~~~~~~Tig~d~~~k~~~~~-~~~v~l~iwDtaGqe~~~~l~~~~~~~a~~~i 90 (216)
T 4dkx_A 12 RKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLE-DRTIRLQLWDTAGLERFRSLIPSYIRDSAAAV 90 (216)
T ss_dssp -CEEEEEECSTTSSHHHHHHHHHHSCCC----------CEEEEEECS-SCEEEEEEECCSCTTTCGGGHHHHHTTCSEEE
T ss_pred CcEEEEEECcCCcCHHHHHHHHHhCCCCCCcCCccceEEEEEEEEec-ceEEEEEEEECCCchhhhhHHHHHhccccEEE
Confidence 468998 9999999 555554 77899999999999999999888 8877 999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCCCCCCCHHHHHHHHhhhCC
Q psy15036 113 LIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQRCREVVTPDQIMFGSTQSS 178 (179)
Q Consensus 113 lvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~~r~Vs~~e~~~~a~~~~~ 178 (179)
+|||+++++||+++..|+..+++....+ +|++|||||+||.++|+|+.+|+++||++.+.
T Consensus 91 lv~di~~~~Sf~~i~~~~~~i~~~~~~~------~piilVgNK~Dl~~~r~V~~~e~~~~a~~~~~ 150 (216)
T 4dkx_A 91 VVYDITNVNSFQQTTKWIDDVRTERGSD------VIIMLVGNKTDLADKRQVSIEEGERKAKELNV 150 (216)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHHTTS------SEEEEEEECTTCGGGCCSCHHHHHHHHHHHTC
T ss_pred EEeecchhHHHHHHHHHHHHHHHhcCCC------CeEEEEeeccchHhcCcccHHHHhhHHHHhCC
Confidence 9999999999999999999999887766 79999999999999999999999999998753
No 2
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=99.93 E-value=2.7e-25 Score=165.63 Aligned_cols=133 Identities=26% Similarity=0.409 Sum_probs=97.6
Q ss_pred ccCceeeEEE-EeCCCCc---eeEeee-ccCCCcccCcceeeeeEEEEEecCCCee----eeCCCchhchhhhhhhhcCC
Q psy15036 38 KEFSFNFGTQ-LGRRGIP---LLKHLK-YLGTGTHGKTVGIVFPAISVTYSIGPRY----FRFPLVSRFLSLTTGLYRGT 108 (179)
Q Consensus 38 ~~~~~~~Kiv-lG~~gvG---~~~~~~-~~~~~~~~~Ti~~~~~~k~v~~~~~~~i----wDt~G~e~~~~~~~~~~~~~ 108 (179)
+++++.+||+ +|+.||| ++..+. ..+...+.||++.++..+.+.++ +..+ ||++|+++|..++..+++++
T Consensus 3 ~~~~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~-~~~~~~~l~Dt~G~~~~~~~~~~~~~~~ 81 (183)
T 2fu5_C 3 KTYDYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELD-GKRIKLQIWDTAGQERFRTITTAYYRGA 81 (183)
T ss_dssp CCCSEEEEEEEECCCCC----------------CHHHHHCEEEEEEEEEET-TEEEEEEEEEC---------CCTTTTTC
T ss_pred cccCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcccceeEEEEEEEC-CEEEEEEEEcCCCChhhhhhHHHHHhcC
Confidence 3567889998 9999999 666665 45667788999998888888888 7544 99999999999999999999
Q ss_pred cEEEEEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCCCCCCCHHHHHHHHhhhC
Q psy15036 109 MGFLLIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQRCREVVTPDQIMFGSTQS 177 (179)
Q Consensus 109 ~~vilvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~~r~Vs~~e~~~~a~~~~ 177 (179)
|++|+|||+++++||+.+..|+..+.+....+ .|++|||||+|+.++|.++.+++++++++.+
T Consensus 82 d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~------~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~ 144 (183)
T 2fu5_C 82 MGIMLVYDITNEKSFDNIRNWIRNIEEHASAD------VEKMILGNKCDVNDKRQVSKERGEKLALDYG 144 (183)
T ss_dssp SEEEEEEETTCHHHHHHHHHHHHHHHHHSCTT------CEEEEEEEC--CCSCCCSCHHHHHHHHHHHT
T ss_pred CEEEEEEECcCHHHHHHHHHHHHHHHHhcCCC------CCEEEEEECccCCccCcCCHHHHHHHHHHcC
Confidence 99999999999999999999999998875544 6899999999999889999999999998764
No 3
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=99.92 E-value=5.5e-25 Score=167.50 Aligned_cols=133 Identities=22% Similarity=0.410 Sum_probs=106.9
Q ss_pred ccCceeeEEE-EeCCCCc---eeEeee-ccCCCcccCcceeeeeEEEEEecCCCee----eeCCCchhchhhhhhhhcCC
Q psy15036 38 KEFSFNFGTQ-LGRRGIP---LLKHLK-YLGTGTHGKTVGIVFPAISVTYSIGPRY----FRFPLVSRFLSLTTGLYRGT 108 (179)
Q Consensus 38 ~~~~~~~Kiv-lG~~gvG---~~~~~~-~~~~~~~~~Ti~~~~~~k~v~~~~~~~i----wDt~G~e~~~~~~~~~~~~~ 108 (179)
+++++.+||+ +|+.+|| +++++. ..+...+.+|++.++..+.+.++ +..+ ||++|+++|..++..+++++
T Consensus 24 ~~~~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~-~~~~~l~i~Dt~G~~~~~~~~~~~~~~~ 102 (201)
T 2hup_A 24 EQYDFLFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQ-GKRVKLQIWDTAGQERFRTITQSYYRSA 102 (201)
T ss_dssp --CCEEEEEEEEECTTSSHHHHHHHHHHSCC----------CEEEEEEEET-TEEEEEEEECCTTCGGGHHHHHHHHTTC
T ss_pred cccccceEEEEECcCCCCHHHHHHHHhhCCCCCCCCCCcceEEEEEEEEEC-CEEEEEEEEECCCcHhHHHHHHHHHhhC
Confidence 4567789997 9999999 666655 55677888999988888888888 7544 99999999999999999999
Q ss_pred cEEEEEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCCCCCCCHHHHHHHHhhhC
Q psy15036 109 MGFLLIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQRCREVVTPDQIMFGSTQS 177 (179)
Q Consensus 109 ~~vilvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~~r~Vs~~e~~~~a~~~~ 177 (179)
|++|+|||+++++||+++..|+..+.+....+ .|++|||||+|+.++|+++.+++++++++.+
T Consensus 103 d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~------~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~ 165 (201)
T 2hup_A 103 NGAILAYDITKRSSFLSVPHWIEDVRKYAGSN------IVQLLIGNKSDLSELREVSLAEAQSLAEHYD 165 (201)
T ss_dssp SEEEEEEETTBHHHHHTHHHHHHHHHHHSCTT------CEEEEEEECTTCGGGCCSCHHHHHHHHHHTT
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHhcCCC------CCEEEEEECCccccccccCHHHHHHHHHHcC
Confidence 99999999999999999999999998876544 6899999999999889999999999998764
No 4
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.92 E-value=1.5e-24 Score=165.63 Aligned_cols=133 Identities=26% Similarity=0.431 Sum_probs=116.7
Q ss_pred ccCceeeEEE-EeCCCCc---eeEeee-ccCCCcccCcceeeeeEEEEEecCCCee----eeCCCchhchhhhhhhhcCC
Q psy15036 38 KEFSFNFGTQ-LGRRGIP---LLKHLK-YLGTGTHGKTVGIVFPAISVTYSIGPRY----FRFPLVSRFLSLTTGLYRGT 108 (179)
Q Consensus 38 ~~~~~~~Kiv-lG~~gvG---~~~~~~-~~~~~~~~~Ti~~~~~~k~v~~~~~~~i----wDt~G~e~~~~~~~~~~~~~ 108 (179)
+++++.+||+ +|+.||| +++++. ..+...+.+|++.++..+.+.++ +..+ |||+|+++|..+...+++++
T Consensus 21 ~~~~~~~ki~lvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~-~~~~~l~l~Dt~G~~~~~~~~~~~~~~~ 99 (201)
T 2ew1_A 21 EDYDFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEIN-GEKVKLQIWDTAGQERFRSITQSYYRSA 99 (201)
T ss_dssp -CCSEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCCSEEEEEEEEEET-TEEEEEEEEEECCSGGGHHHHGGGSTTC
T ss_pred cccccceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEEC-CEEEEEEEEECCCcHHHHHHHHHHHhcC
Confidence 3567899997 9999999 666555 55677889999999988888888 7654 99999999999999999999
Q ss_pred cEEEEEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCCCCCCCHHHHHHHHhhhC
Q psy15036 109 MGFLLIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQRCREVVTPDQIMFGSTQS 177 (179)
Q Consensus 109 ~~vilvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~~r~Vs~~e~~~~a~~~~ 177 (179)
+++|+|||+++++||+++..|+..+.+..... .|++|||||+|+.++|+++.++++++++..+
T Consensus 100 d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~~------~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~ 162 (201)
T 2ew1_A 100 NALILTYDITCEESFRCLPEWLREIEQYASNK------VITVLVGNKIDLAERREVSQQRAEEFSEAQD 162 (201)
T ss_dssp SEEEEEEETTCHHHHHTHHHHHHHHHHHSCTT------CEEEEEEECGGGGGGCSSCHHHHHHHHHHHT
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHhcCCC------CCEEEEEECCCCccccccCHHHHHHHHHHcC
Confidence 99999999999999999999999998876554 6899999999999889999999999987654
No 5
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=99.91 E-value=8.9e-24 Score=160.63 Aligned_cols=132 Identities=25% Similarity=0.408 Sum_probs=116.1
Q ss_pred cCceeeEEE-EeCCCCc---eeEeee-ccCCCcccCcceeeeeEEEEEecCCCee----eeCCCchhchhhhhhhhcCCc
Q psy15036 39 EFSFNFGTQ-LGRRGIP---LLKHLK-YLGTGTHGKTVGIVFPAISVTYSIGPRY----FRFPLVSRFLSLTTGLYRGTM 109 (179)
Q Consensus 39 ~~~~~~Kiv-lG~~gvG---~~~~~~-~~~~~~~~~Ti~~~~~~k~v~~~~~~~i----wDt~G~e~~~~~~~~~~~~~~ 109 (179)
++++.+||+ +|+.||| ++.++. ..+...+.+|++.++..+.+.++ +..+ ||++|+++|..++..+++++|
T Consensus 4 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~-~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d 82 (206)
T 2bcg_Y 4 EYDYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELD-GKTVKLQIWDTAGQERFRTITSSYYRGSH 82 (206)
T ss_dssp CCSEEEEEEEEESTTSSHHHHHHHHHHCCCCTTCCCSSCCCEEEEEEEET-TEEEEEEEECCTTTTTTTCCCGGGGTTCS
T ss_pred ccCcceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEEC-CEEEEEEEEeCCChHHHHHHHHHhccCCC
Confidence 567889998 9999999 666655 55677888999999888888888 7644 999999999999999999999
Q ss_pred EEEEEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCCCCCCCHHHHHHHHhhhC
Q psy15036 110 GFLLIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQRCREVVTPDQIMFGSTQS 177 (179)
Q Consensus 110 ~vilvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~~r~Vs~~e~~~~a~~~~ 177 (179)
++|+|||+++++||+.+..|+..+....... .|++|||||+|+.++|.++.+++.+++++.+
T Consensus 83 ~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~------~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~ 144 (206)
T 2bcg_Y 83 GIIIVYDVTDQESFNGVKMWLQEIDRYATST------VLKLLVGNKCDLKDKRVVEYDVAKEFADANK 144 (206)
T ss_dssp EEEEEEETTCHHHHHHHHHHHHHHHHHSCTT------CEEEEEEECTTCTTTCCSCHHHHHHHHHHTT
T ss_pred EEEEEEECcCHHHHHHHHHHHHHHHHhcCCC------CCEEEEEECCCCccccccCHHHHHHHHHHcC
Confidence 9999999999999999999999998876554 6899999999999889999999999997654
No 6
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=99.91 E-value=9.9e-24 Score=157.30 Aligned_cols=132 Identities=23% Similarity=0.416 Sum_probs=115.4
Q ss_pred cCceeeEEE-EeCCCCc---eeEeee-ccCCCcccCcceeeeeEEEEEecCCCee----eeCCCchhchhhhhhhhcCCc
Q psy15036 39 EFSFNFGTQ-LGRRGIP---LLKHLK-YLGTGTHGKTVGIVFPAISVTYSIGPRY----FRFPLVSRFLSLTTGLYRGTM 109 (179)
Q Consensus 39 ~~~~~~Kiv-lG~~gvG---~~~~~~-~~~~~~~~~Ti~~~~~~k~v~~~~~~~i----wDt~G~e~~~~~~~~~~~~~~ 109 (179)
++++.+||+ +|+.||| ++..+. ..+...+.+|++.++..+.+.++ +..+ ||++|++++..+...+++++|
T Consensus 6 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d 84 (186)
T 2bme_A 6 TYDFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVG-GKYVKLQIWDTAGQERFRSVTRSYYRGAA 84 (186)
T ss_dssp CCSEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCSEEEEEEEEEEET-TEEEEEEEEEECCSGGGHHHHHTTSTTCS
T ss_pred ccccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEEC-CEEEEEEEEeCCCcHHHHHHHHHHHhcCC
Confidence 567889998 9999999 665555 55667788999988888888887 7544 999999999999999999999
Q ss_pred EEEEEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCCCCCCCHHHHHHHHhhhC
Q psy15036 110 GFLLIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQRCREVVTPDQIMFGSTQS 177 (179)
Q Consensus 110 ~vilvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~~r~Vs~~e~~~~a~~~~ 177 (179)
++|+|||+++++||+.+..|+..+......+ .|+++||||+|+.+.+.++.+++.+++++..
T Consensus 85 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~------~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~ 146 (186)
T 2bme_A 85 GALLVYDITSRETYNALTNWLTDARMLASQN------IVIILCGNKKDLDADREVTFLEASRFAQENE 146 (186)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHSCTT------CEEEEEEECGGGGGGCCSCHHHHHHHHHHTT
T ss_pred EEEEEEECcCHHHHHHHHHHHHHHHHhcCCC------CcEEEEEECcccccccccCHHHHHHHHHHcC
Confidence 9999999999999999999999998876554 6899999999998889999999999988754
No 7
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=99.91 E-value=1.1e-23 Score=158.47 Aligned_cols=133 Identities=24% Similarity=0.398 Sum_probs=111.4
Q ss_pred ccCceeeEEE-EeCCCCc---eeEeee-ccCCCcccCcceeeeeEEEEEecCCCee----eeCCCchhchhhhhhhhcCC
Q psy15036 38 KEFSFNFGTQ-LGRRGIP---LLKHLK-YLGTGTHGKTVGIVFPAISVTYSIGPRY----FRFPLVSRFLSLTTGLYRGT 108 (179)
Q Consensus 38 ~~~~~~~Kiv-lG~~gvG---~~~~~~-~~~~~~~~~Ti~~~~~~k~v~~~~~~~i----wDt~G~e~~~~~~~~~~~~~ 108 (179)
+...+.+||+ +|+.||| ++..+. ..+...+.+|++.++..+.+.++ +..+ ||++|+++|..+...+++++
T Consensus 16 ~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~-~~~~~~~i~Dt~G~~~~~~~~~~~~~~~ 94 (191)
T 2a5j_A 16 PRGSYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNID-GKQIKLQIWDTAGQESFRSITRSYYRGA 94 (191)
T ss_dssp CTTCEEEEEEEESSTTSSHHHHHHHHHHSCCCC-----CCSSEEEEEEEET-TEEEEEEEECCTTGGGTSCCCHHHHTTC
T ss_pred cccCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEEC-CEEEEEEEEECCCchhhhhhHHHHhccC
Confidence 3556789998 9999999 666655 55667788899988888888888 7544 99999999999999999999
Q ss_pred cEEEEEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCCCCCCCHHHHHHHHhhhC
Q psy15036 109 MGFLLIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQRCREVVTPDQIMFGSTQS 177 (179)
Q Consensus 109 ~~vilvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~~r~Vs~~e~~~~a~~~~ 177 (179)
+++|+|||+++++||+.+..|+..+.+....+ .|++||+||+|+.++++++.+++++++++.+
T Consensus 95 d~ii~v~d~~~~~s~~~~~~~l~~i~~~~~~~------~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~ 157 (191)
T 2a5j_A 95 AGALLVYDITRRETFNHLTSWLEDARQHSSSN------MVIMLIGNKSDLESRRDVKREEGEAFAREHG 157 (191)
T ss_dssp SEEEEEEETTCHHHHHTHHHHHHHHHHHSCTT------CEEEEEEECTTCGGGCCSCHHHHHHHHHHHT
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHhcCCC------CCEEEEEECcccCCccccCHHHHHHHHHHcC
Confidence 99999999999999999999999998876554 6899999999999889999999999998754
No 8
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=99.91 E-value=2.6e-23 Score=154.24 Aligned_cols=137 Identities=23% Similarity=0.341 Sum_probs=113.4
Q ss_pred ccccccCceeeEEE-EeCCCCc---eeEeee-ccCCCcccCcceeeeeEEEEEecCCCee----eeCCCchhchhhhhhh
Q psy15036 34 MTAAKEFSFNFGTQ-LGRRGIP---LLKHLK-YLGTGTHGKTVGIVFPAISVTYSIGPRY----FRFPLVSRFLSLTTGL 104 (179)
Q Consensus 34 m~~~~~~~~~~Kiv-lG~~gvG---~~~~~~-~~~~~~~~~Ti~~~~~~k~v~~~~~~~i----wDt~G~e~~~~~~~~~ 104 (179)
|.........+||+ +|+.||| ++..+. ..+...+.+|++.++..+.+.++ +..+ ||++|+++|..+...+
T Consensus 3 m~~~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~Dt~G~~~~~~~~~~~ 81 (181)
T 2efe_B 3 MAAAGNKSINAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVN-DATVKFEIWDTAGQERYHSLAPMY 81 (181)
T ss_dssp -------CEEEEEEEECCTTSCHHHHHHHHHHCCCTTTSCCCSCCSEEEEEEEET-TEEEEEEEEECCCSGGGGGGTHHH
T ss_pred ccCCCCCccceEEEEECcCCCCHHHHHHHHHcCCCCCcCCCCceeEEEEEEEEEC-CEEEEEEEEeCCCChhhhhhhHHH
Confidence 34444556789997 9999999 555555 55667778999988888888887 6554 9999999999999999
Q ss_pred hcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCCCCCCCHHHHHHHHhhhC
Q psy15036 105 YRGTMGFLLIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQRCREVVTPDQIMFGSTQS 177 (179)
Q Consensus 105 ~~~~~~vilvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~~r~Vs~~e~~~~a~~~~ 177 (179)
++++|++|+|||++++.||+.+..|+..+.+....+ .|+++|+||+|+.+.++++.+++++++++..
T Consensus 82 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~------~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~ 148 (181)
T 2efe_B 82 YRGAAAAIIVFDVTNQASFERAKKWVQELQAQGNPN------MVMALAGNKSDLLDARKVTAEDAQTYAQENG 148 (181)
T ss_dssp HTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTT------CEEEEEEECTTCTTTCCSCHHHHHHHHHHTT
T ss_pred hccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCC------CcEEEEEECCcccccccCCHHHHHHHHHHcC
Confidence 999999999999999999999999999998876544 6899999999998889999999999998754
No 9
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=99.91 E-value=1.6e-23 Score=157.89 Aligned_cols=135 Identities=20% Similarity=0.272 Sum_probs=114.3
Q ss_pred ccccCceeeEEE-EeCCCCc---eeEeee-ccCCCcccCcceeeeeEEEEEecCCCee----eeCCCchhchhhhhhhhc
Q psy15036 36 AAKEFSFNFGTQ-LGRRGIP---LLKHLK-YLGTGTHGKTVGIVFPAISVTYSIGPRY----FRFPLVSRFLSLTTGLYR 106 (179)
Q Consensus 36 ~~~~~~~~~Kiv-lG~~gvG---~~~~~~-~~~~~~~~~Ti~~~~~~k~v~~~~~~~i----wDt~G~e~~~~~~~~~~~ 106 (179)
+.+.++..+||+ +|+.||| ++..+. ..+...+.+|++.++..+.+.++ +..+ ||++|+++|..+...+++
T Consensus 16 ~~~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~Dt~G~~~~~~~~~~~~~ 94 (192)
T 2fg5_A 16 PRGSAIRELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCG-NELHKFLIWDTAGQERFHSLAPMYYR 94 (192)
T ss_dssp -----CEEEEEEEEECTTSSHHHHHHHHHHCCCCTTCCCCSSEEEEEEEEECS-SSEEEEEEEEECCSGGGGGGTHHHHT
T ss_pred cccccCCceEEEEECcCCCCHHHHHHHHhcCCCCCCcCCCcceeEEEEEEEeC-CEEEEEEEEcCCCchhhHhhhHHhhc
Confidence 445677899997 9999999 666665 44567888999998887888877 6654 999999999999999999
Q ss_pred CCcEEEEEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCCCCCCCHHHHHHHHhhhC
Q psy15036 107 GTMGFLLIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQRCREVVTPDQIMFGSTQS 177 (179)
Q Consensus 107 ~~~~vilvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~~r~Vs~~e~~~~a~~~~ 177 (179)
.++++|+|||+++++||+.+..|+..+.+..... .|+++|+||+|+.++++++.+++++++++..
T Consensus 95 ~~d~iilV~d~~~~~s~~~~~~~~~~i~~~~~~~------~piiiv~NK~Dl~~~~~v~~~~~~~~~~~~~ 159 (192)
T 2fg5_A 95 GSAAAVIVYDITKQDSFYTLKKWVKELKEHGPEN------IVMAIAGNKCDLSDIREVPLKDAKEYAESIG 159 (192)
T ss_dssp TCSEEEEEEETTCTHHHHHHHHHHHHHHHHSCTT------CEEEEEEECGGGGGGCCSCHHHHHHHHHTTT
T ss_pred cCCEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCC------CcEEEEEECcccccccccCHHHHHHHHHHcC
Confidence 9999999999999999999999999998876544 6899999999998889999999999998654
No 10
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=99.91 E-value=1.8e-23 Score=154.45 Aligned_cols=133 Identities=21% Similarity=0.423 Sum_probs=115.3
Q ss_pred ccCceeeEEE-EeCCCCc---eeEeee-ccCCCcccCcceeeeeEEEEEecCCCee----eeCCCchhchhhhhhhhcCC
Q psy15036 38 KEFSFNFGTQ-LGRRGIP---LLKHLK-YLGTGTHGKTVGIVFPAISVTYSIGPRY----FRFPLVSRFLSLTTGLYRGT 108 (179)
Q Consensus 38 ~~~~~~~Kiv-lG~~gvG---~~~~~~-~~~~~~~~~Ti~~~~~~k~v~~~~~~~i----wDt~G~e~~~~~~~~~~~~~ 108 (179)
...+..+||+ +|+.+|| ++..+. ..+...+.+|++.++..+.+.++ +..+ ||++|++++..+...+++++
T Consensus 10 ~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~-~~~~~~~l~Dt~G~~~~~~~~~~~~~~~ 88 (179)
T 1z0f_A 10 YNYSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVS-GQKIKLQIWDTAGQERFRAVTRSYYRGA 88 (179)
T ss_dssp -CCSEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCTTSCCCCEEEEEEEET-TEEEEEEEEECTTGGGTCHHHHHHHHTC
T ss_pred cccccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEEC-CeEEEEEEEECCCChHhhhhHHHHhccC
Confidence 3556789998 9999999 666655 45677788999988888888887 6544 99999999999999999999
Q ss_pred cEEEEEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCCCCCCCHHHHHHHHhhhC
Q psy15036 109 MGFLLIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQRCREVVTPDQIMFGSTQS 177 (179)
Q Consensus 109 ~~vilvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~~r~Vs~~e~~~~a~~~~ 177 (179)
|++|+|||+++++||+.+..|+..+......+ .|+++|+||+|+.++++++.+++++++++..
T Consensus 89 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~------~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~ 151 (179)
T 1z0f_A 89 AGALMVYDITRRSTYNHLSSWLTDARNLTNPN------TVIILIGNKADLEAQRDVTYEEAKQFAEENG 151 (179)
T ss_dssp SEEEEEEETTCHHHHHTHHHHHHHHHHHSCTT------CEEEEEEECTTCGGGCCSCHHHHHHHHHHTT
T ss_pred CEEEEEEeCcCHHHHHHHHHHHHHHHHhcCCC------CcEEEEEECcccccccccCHHHHHHHHHHcC
Confidence 99999999999999999999999998876554 6899999999999889999999999998754
No 11
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=99.91 E-value=2.6e-23 Score=157.55 Aligned_cols=132 Identities=27% Similarity=0.400 Sum_probs=115.0
Q ss_pred cCceeeEEE-EeCCCCc---eeEeee-ccCCCcccCcceeeeeEEEEEecCCCee----eeCCCchhchhhhhhhhcCCc
Q psy15036 39 EFSFNFGTQ-LGRRGIP---LLKHLK-YLGTGTHGKTVGIVFPAISVTYSIGPRY----FRFPLVSRFLSLTTGLYRGTM 109 (179)
Q Consensus 39 ~~~~~~Kiv-lG~~gvG---~~~~~~-~~~~~~~~~Ti~~~~~~k~v~~~~~~~i----wDt~G~e~~~~~~~~~~~~~~ 109 (179)
.+++.+||+ +|+.||| ++..+. ..+...+.+|++.++..+.+.++ +..+ ||++|+++|..++..+++++|
T Consensus 4 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~-~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d 82 (203)
T 1zbd_A 4 MFDYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRN-DKRIKLQIWDTAGLERYRTITTAYYRGAM 82 (203)
T ss_dssp SCSEEEEEEEECSTTSSHHHHHHHHHTCCCCSCCCCCCSEEEEEEEEEET-TEEEEEEEEEECCSGGGHHHHHTTGGGCS
T ss_pred ccceeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeEEEEEEEEC-CeEEEEEEEECCCchhhcchHHHhhcCCC
Confidence 567789998 9999999 665555 45667788999988887888777 6554 999999999999999999999
Q ss_pred EEEEEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCCCCCCCHHHHHHHHhhhC
Q psy15036 110 GFLLIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQRCREVVTPDQIMFGSTQS 177 (179)
Q Consensus 110 ~vilvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~~r~Vs~~e~~~~a~~~~ 177 (179)
++|+|||+++++||+.+..|+..+......+ .|+++||||+|+.+.+.++.+++++++++.+
T Consensus 83 ~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~------~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~ 144 (203)
T 1zbd_A 83 GFILMYDITNEESFNAVQDWSTQIKTYSWDN------AQVLLVGNKCDMEDERVVSSERGRQLADHLG 144 (203)
T ss_dssp EEEEEEETTCHHHHHHHHHHHHHHHHHSCSS------CEEEEEEECTTCTTSCCSCHHHHHHHHHHHT
T ss_pred EEEEEEECcCHHHHHHHHHHHHHHHHhcCCC------CCEEEEEECcccCcccccCHHHHHHHHHHCC
Confidence 9999999999999999999999998876444 6899999999999889999999999998754
No 12
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.91 E-value=2.4e-24 Score=162.14 Aligned_cols=133 Identities=29% Similarity=0.403 Sum_probs=116.7
Q ss_pred ccCceeeEEE-EeCCCCc---eeEeee-ccCCCcccCcceeeeeEEEEEecCCCee----eeCCCchhchhhhhhhhcCC
Q psy15036 38 KEFSFNFGTQ-LGRRGIP---LLKHLK-YLGTGTHGKTVGIVFPAISVTYSIGPRY----FRFPLVSRFLSLTTGLYRGT 108 (179)
Q Consensus 38 ~~~~~~~Kiv-lG~~gvG---~~~~~~-~~~~~~~~~Ti~~~~~~k~v~~~~~~~i----wDt~G~e~~~~~~~~~~~~~ 108 (179)
+.+++.+||+ +|+.+|| ++..+. ..+...+.+|++.++..+.+.++ +..+ ||++|+++|..+...+++++
T Consensus 18 ~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~-~~~~~~~i~Dt~G~~~~~~~~~~~~~~~ 96 (191)
T 3dz8_A 18 GNFDYMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRH-EKRVKLQIWDTAGQERYRTITTAYYRGA 96 (191)
T ss_dssp TEEEECEEEEEEESTTSSHHHHHHHHHHHTTCCCEEEEETTTEEEEEEEET-TTTEEEEEECHHHHHHCHHHHHHHHTTC
T ss_pred cccCeeeEEEEECCCCcCHHHHHHHHhcCCCCcccCCCeeeEEEEEEEEEC-CEEEEEEEEeCCChHHHHHHHHHHHccC
Confidence 4567899998 9999999 666655 55677888999988888888877 6554 99999999999999999999
Q ss_pred cEEEEEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCCCCCCCHHHHHHHHhhhC
Q psy15036 109 MGFLLIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQRCREVVTPDQIMFGSTQS 177 (179)
Q Consensus 109 ~~vilvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~~r~Vs~~e~~~~a~~~~ 177 (179)
|++|+|||+++++||+.+..|+..+......+ .|++|||||+|+.+++.++.++++.++++.+
T Consensus 97 d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~------~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~ 159 (191)
T 3dz8_A 97 MGFILMYDITNEESFNAVQDWATQIKTYSWDN------AQVILVGNKCDMEEERVVPTEKGQLLAEQLG 159 (191)
T ss_dssp CEEEEEEETTCHHHHHTHHHHHHHHHHHSCTT------CEEEEEEECTTCGGGCCSCHHHHHHHHHHHT
T ss_pred CEEEEEEECcCHHHHHHHHHHHHHHHHhcCCC------CCEEEEEECCCCccccccCHHHHHHHHHHcC
Confidence 99999999999999999999999999876554 7899999999999989999999999998764
No 13
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=99.91 E-value=9.9e-24 Score=154.82 Aligned_cols=131 Identities=23% Similarity=0.364 Sum_probs=107.5
Q ss_pred CceeeEEE-EeCCCCc---eeEeee-ccCCCcccCcceeeeeEEEEEecCCCee----eeCCCchhchhhhhhhhcCCcE
Q psy15036 40 FSFNFGTQ-LGRRGIP---LLKHLK-YLGTGTHGKTVGIVFPAISVTYSIGPRY----FRFPLVSRFLSLTTGLYRGTMG 110 (179)
Q Consensus 40 ~~~~~Kiv-lG~~gvG---~~~~~~-~~~~~~~~~Ti~~~~~~k~v~~~~~~~i----wDt~G~e~~~~~~~~~~~~~~~ 110 (179)
.++.+||+ +|+.||| +++.+. ..+...+.+|++.++..+.+.++ +..+ ||++|++++..+...+++++|+
T Consensus 3 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~-~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ 81 (170)
T 1z08_A 3 RAYSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIG-GKRVNLAIWDTAGQERFHALGPIYYRDSNG 81 (170)
T ss_dssp -CEEEEEEEECCTTSCHHHHHHHHHHCCCCSSCCCCCSCEEEEEEEESS-SCEEEEEEEECCCC-------CCSSTTCSE
T ss_pred CCcceEEEEECcCCCCHHHHHHHHHcCCCCcCCCCccceEEEEEEEEEC-CEEEEEEEEECCCcHhhhhhHHHHhccCCE
Confidence 45689997 9999999 665555 55667788999998888888888 7765 9999999999999999999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCCCCCCCHHHHHHHHhhhC
Q psy15036 111 FLLIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQRCREVVTPDQIMFGSTQS 177 (179)
Q Consensus 111 vilvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~~r~Vs~~e~~~~a~~~~ 177 (179)
+++|||+++++||+.+..|+..+.+....+ .|+++|+||+|+.++++++.+++++++++.+
T Consensus 82 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~------~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~ 142 (170)
T 1z08_A 82 AILVYDITDEDSFQKVKNWVKELRKMLGNE------ICLCIVGNKIDLEKERHVSIQEAESYAESVG 142 (170)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHHHGGG------SEEEEEEECGGGGGGCCSCHHHHHHHHHHTT
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHhcCCC------CeEEEEEECcccccccccCHHHHHHHHHHcC
Confidence 999999999999999999999998776544 6899999999999889999999999998754
No 14
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=99.91 E-value=2.1e-23 Score=156.53 Aligned_cols=134 Identities=28% Similarity=0.368 Sum_probs=115.5
Q ss_pred cccCceeeEEE-EeCCCCc---eeEeee-ccCCCcccCcceeeeeEEEEEecCCCee----eeCCCchhchhhhhhhhcC
Q psy15036 37 AKEFSFNFGTQ-LGRRGIP---LLKHLK-YLGTGTHGKTVGIVFPAISVTYSIGPRY----FRFPLVSRFLSLTTGLYRG 107 (179)
Q Consensus 37 ~~~~~~~~Kiv-lG~~gvG---~~~~~~-~~~~~~~~~Ti~~~~~~k~v~~~~~~~i----wDt~G~e~~~~~~~~~~~~ 107 (179)
....++.+||+ +|+.+|| +++.+. ..+...+.+|++.++..+.+.++ +..+ ||++|++++..+...+++.
T Consensus 16 ~~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~-~~~~~~~l~Dt~G~~~~~~~~~~~~~~ 94 (189)
T 2gf9_A 16 PRGSDYMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRH-DKRIKLQIWDTAGQERYRTITTAYYRG 94 (189)
T ss_dssp CTTCSEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCCCEEEEEEEEET-TEEEEEEEEECCSCCSSCCSGGGGGTT
T ss_pred CcccCceeEEEEECCCCCCHHHHHHHHHcCCCCCCcCCceeEEEEEEEEEEC-CeEEEEEEEeCCCcHHHhhhHHHhccC
Confidence 34566789998 9999999 666665 45667788999988877777777 6554 9999999999999999999
Q ss_pred CcEEEEEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCCCCCCCHHHHHHHHhhhC
Q psy15036 108 TMGFLLIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQRCREVVTPDQIMFGSTQS 177 (179)
Q Consensus 108 ~~~vilvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~~r~Vs~~e~~~~a~~~~ 177 (179)
+|++|+|||+++++||+.+..|+..+.+....+ .|+++|+||+|+.+++.++.+++++++++.+
T Consensus 95 ~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~------~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~ 158 (189)
T 2gf9_A 95 AMGFLLMYDIANQESFAAVQDWATQIKTYSWDN------AQVILVGNKCDLEDERVVPAEDGRRLADDLG 158 (189)
T ss_dssp CSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTT------CEEEEEEECTTCGGGCCSCHHHHHHHHHHHT
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCC------CCEEEEEECcccccccCCCHHHHHHHHHHcC
Confidence 999999999999999999999999998876444 6899999999999889999999999998754
No 15
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=99.91 E-value=1.1e-23 Score=159.85 Aligned_cols=132 Identities=20% Similarity=0.167 Sum_probs=107.5
Q ss_pred cCceeeEEE-EeCCCCc---eeEeee-ccCCCcccCcceeeeeEEEEEecCCCee----eeCCCchhchh-hhhhhhcCC
Q psy15036 39 EFSFNFGTQ-LGRRGIP---LLKHLK-YLGTGTHGKTVGIVFPAISVTYSIGPRY----FRFPLVSRFLS-LTTGLYRGT 108 (179)
Q Consensus 39 ~~~~~~Kiv-lG~~gvG---~~~~~~-~~~~~~~~~Ti~~~~~~k~v~~~~~~~i----wDt~G~e~~~~-~~~~~~~~~ 108 (179)
..+..+||+ +|++||| +++++. ..+...+.++.+.++..+.+.++ +..+ ||++|++++.. ++..|++++
T Consensus 19 ~~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~ 97 (195)
T 3cbq_A 19 QKDGIFKVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMVD-KEEVTLVVYDIWEQGDAGGWLRDHCLQTG 97 (195)
T ss_dssp ---CEEEEEEECSTTSSHHHHHHHTCCEECCGGGTTTSCTTEEEEEEEET-TEEEEEEEECCCCCSGGGHHHHHHHHHHC
T ss_pred CCCcEEEEEEECCCCCCHHHHHHHHHhccCCccCCCCcccceEEEEEEEC-CEEEEEEEEecCCCccchhhhHHHhhccC
Confidence 445689997 9999999 665554 22333455677777777888888 7765 99999998875 888999999
Q ss_pred cEEEEEEeCCChhhHHHHHHHHHHHHHHhCC-ccCccccceEEEEeeCCCcCCCCCCCHHHHHHHHhhhC
Q psy15036 109 MGFLLIFDVTNENSFKDVEKWLLQIKVMDGA-LFTHFELQIVFMRGCLELLQRCREVVTPDQIMFGSTQS 177 (179)
Q Consensus 109 ~~vilvyDit~~~Sf~~l~~w~~~i~~~~~~-~~~~~~~~~iilvGnK~Dl~~~r~Vs~~e~~~~a~~~~ 177 (179)
+++|+|||+++++||+++..|+.++.+.... + .|++|||||+|+.++|.++.++++++|++..
T Consensus 98 d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~------~piilv~nK~Dl~~~~~v~~~~~~~~a~~~~ 161 (195)
T 3cbq_A 98 DAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHD------LPVILVGNKSDLARSREVSLEEGRHLAGTLS 161 (195)
T ss_dssp SEEEEEEETTCHHHHHTHHHHHHHHHHHSTTSC------CCEEEEEECTTCTTTCCSCHHHHHHHHHHTT
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCC------CCEEEEeechhccccCCcCHHHHHHHHHHhC
Confidence 9999999999999999999999999876542 3 6889999999999889999999999998754
No 16
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=99.91 E-value=2.7e-23 Score=156.12 Aligned_cols=133 Identities=23% Similarity=0.387 Sum_probs=117.2
Q ss_pred ccCceeeEEE-EeCCCCc---eeEeee-ccCCCcccCcceeeeeEEEEEecCCCee----eeCCCchhchhhhhhhhcCC
Q psy15036 38 KEFSFNFGTQ-LGRRGIP---LLKHLK-YLGTGTHGKTVGIVFPAISVTYSIGPRY----FRFPLVSRFLSLTTGLYRGT 108 (179)
Q Consensus 38 ~~~~~~~Kiv-lG~~gvG---~~~~~~-~~~~~~~~~Ti~~~~~~k~v~~~~~~~i----wDt~G~e~~~~~~~~~~~~~ 108 (179)
++.++.+||+ +|+.+|| ++..+. ..+...+.+|++.++..+.+.++ +..+ ||++|++++..+...+++.+
T Consensus 11 ~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~Dt~G~~~~~~~~~~~~~~~ 89 (196)
T 3tkl_A 11 PEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELD-GKTIKLQIWDTAGQERFRTITSSYYRGA 89 (196)
T ss_dssp CCCSEEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCCCSSEEEEEEEEEET-TEEEEEEEEEECCSGGGCTTHHHHHTTC
T ss_pred cccccceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEEC-CEEEEEEEEECCCcHhhhhhHHHHHhhC
Confidence 4556789998 9999999 666555 55677888999998888888888 7554 99999999999999999999
Q ss_pred cEEEEEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCCCCCCCHHHHHHHHhhhC
Q psy15036 109 MGFLLIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQRCREVVTPDQIMFGSTQS 177 (179)
Q Consensus 109 ~~vilvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~~r~Vs~~e~~~~a~~~~ 177 (179)
|++|+|||+++++||+.+..|+..+.+....+ .|++||+||+|+.+.+.++.++++++++...
T Consensus 90 d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~------~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~ 152 (196)
T 3tkl_A 90 HGIIVVYDVTDQESFNNVKQWLQEIDRYASEN------VNKLLVGNKCDLTTKKVVDYTTAKEFADSLG 152 (196)
T ss_dssp SEEEEEEETTCHHHHHTHHHHHHHHHHHSCTT------CEEEEEEECTTCTTTCCSCHHHHHHHHHHTT
T ss_pred CEEEEEEECcCHHHHHHHHHHHHHHHHhcCCC------CCEEEEEECcccccccccCHHHHHHHHHHcC
Confidence 99999999999999999999999998887655 6899999999999999999999999998764
No 17
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=99.91 E-value=2.4e-23 Score=154.06 Aligned_cols=133 Identities=26% Similarity=0.412 Sum_probs=112.5
Q ss_pred cccCceeeEEE-EeCCCCc---eeEeee-ccCCCcccCcceeeeeEEEEEecCCCee----eeCCCchhchhhhhhhhcC
Q psy15036 37 AKEFSFNFGTQ-LGRRGIP---LLKHLK-YLGTGTHGKTVGIVFPAISVTYSIGPRY----FRFPLVSRFLSLTTGLYRG 107 (179)
Q Consensus 37 ~~~~~~~~Kiv-lG~~gvG---~~~~~~-~~~~~~~~~Ti~~~~~~k~v~~~~~~~i----wDt~G~e~~~~~~~~~~~~ 107 (179)
.++++..+||+ +|+.||| ++..+. ..+...+.+|++.++..+.+.++ +..+ ||++|++++..+...++++
T Consensus 3 ~~~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~Dt~G~~~~~~~~~~~~~~ 81 (181)
T 3tw8_B 3 ARDYDHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEIN-GEKVKLQIWDTAGQERFRTITSTYYRG 81 (181)
T ss_dssp ---CCEEEEEEEECCTTSCHHHHHHHHCSCC---CCTTTBSEEEEEEEEEET-TEEEEEEEEEETTGGGCSSCCGGGGTT
T ss_pred ccccCcceEEEEECCCCCCHHHHHHHHhcCCCCCccCCCceeEEEEEEEEEC-CEEEEEEEEcCCCchhhhhhHHHHhcc
Confidence 34567899998 9999999 665555 44567788999988888888888 7544 9999999999999999999
Q ss_pred CcEEEEEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCCCCCCCHHHHHHHHhhhC
Q psy15036 108 TMGFLLIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQRCREVVTPDQIMFGSTQS 177 (179)
Q Consensus 108 ~~~vilvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~~r~Vs~~e~~~~a~~~~ 177 (179)
+|++++|||+++++||+.+..|+..+.+..+. .|+++||||+|+.+.+.++.+++..++....
T Consensus 82 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-------~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~ 144 (181)
T 3tw8_B 82 THGVIVVYDVTSAESFVNVKRWLHEINQNCDD-------VCRILVGNKNDDPERKVVETEDAYKFAGQMG 144 (181)
T ss_dssp CSEEEEEEETTCHHHHHHHHHHHHHHHHHCTT-------SEEEEEEECTTCGGGCCSCHHHHHHHHHHHT
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHhCCC-------CCEEEEEECCCCchhcccCHHHHHHHHHHcC
Confidence 99999999999999999999999999886654 6889999999999989999999999998764
No 18
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=99.90 E-value=1.7e-23 Score=160.89 Aligned_cols=129 Identities=15% Similarity=0.135 Sum_probs=109.3
Q ss_pred ceeeEEE-EeCCCCc---eeEeee-ccCCCcccCcceeeeeEEEEEecCCCee----eeCCCchhchhhhhhhhcCCcEE
Q psy15036 41 SFNFGTQ-LGRRGIP---LLKHLK-YLGTGTHGKTVGIVFPAISVTYSIGPRY----FRFPLVSRFLSLTTGLYRGTMGF 111 (179)
Q Consensus 41 ~~~~Kiv-lG~~gvG---~~~~~~-~~~~~~~~~Ti~~~~~~k~v~~~~~~~i----wDt~G~e~~~~~~~~~~~~~~~v 111 (179)
...+||+ +|+.+|| ++.++. ..+...+.||++.++ .+.+.++ +..+ |||+|+++|..++..+++++|++
T Consensus 25 ~~~~ki~vvG~~~vGKSsL~~~l~~~~~~~~~~~t~~~~~-~~~~~~~-~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ 102 (214)
T 3q3j_B 25 VARCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENY-TACLETE-EQRVELSLWDTSGSPYYDNVRPLCYSDSDAV 102 (214)
T ss_dssp --CEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEE-EEEEEC---CEEEEEEEEECCSGGGTTTGGGGCTTCSEE
T ss_pred cceEEEEEECcCCCCHHHHHHHHhcCCCCCCcCCeeeeeE-EEEEEEC-CEEEEEEEEECCCCHhHHHHHHHHcCCCeEE
Confidence 4579998 9999999 666655 667888899999877 4667777 7665 99999999999999999999999
Q ss_pred EEEEeCCChhhHHH-HHHHHHHHHHHhCCccCccccceEEEEeeCCCcCC------------CCCCCHHHHHHHHhhhCC
Q psy15036 112 LLIFDVTNENSFKD-VEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQR------------CREVVTPDQIMFGSTQSS 178 (179)
Q Consensus 112 ilvyDit~~~Sf~~-l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~------------~r~Vs~~e~~~~a~~~~~ 178 (179)
|+|||+++++||++ +..|+..+.+..+. .|++|||||+||.+ +|.++.+++.++|++.+.
T Consensus 103 i~v~d~~~~~s~~~~~~~~~~~i~~~~~~-------~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 175 (214)
T 3q3j_B 103 LLCFDISRPETVDSALKKWRTEILDYCPS-------TRVLLIGCKTDLRTDLSTLMELSHQKQAPISYEQGCAIAKQLGA 175 (214)
T ss_dssp EEEEETTCTHHHHHHHTHHHHHHHHHCTT-------SEEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHHHHTC
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHHhCCC-------CCEEEEEEChhhccchhhhhhhcccccCccCHHHHHHHHHHcCC
Confidence 99999999999999 69999999987654 68999999999976 489999999999998753
No 19
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=99.90 E-value=5.7e-24 Score=157.38 Aligned_cols=129 Identities=19% Similarity=0.251 Sum_probs=110.8
Q ss_pred eeeEEE-EeCCCCc---eeEeee-ccCCCcccCcceeeeeEEEEEecCCC---ee--eeCCCchhchhhhhhhhcCCcEE
Q psy15036 42 FNFGTQ-LGRRGIP---LLKHLK-YLGTGTHGKTVGIVFPAISVTYSIGP---RY--FRFPLVSRFLSLTTGLYRGTMGF 111 (179)
Q Consensus 42 ~~~Kiv-lG~~gvG---~~~~~~-~~~~~~~~~Ti~~~~~~k~v~~~~~~---~i--wDt~G~e~~~~~~~~~~~~~~~v 111 (179)
..+||+ +|+.||| +++.+. ..+...+.||++.++..+.+.++ +. .+ ||++|+++|..++..+++++|++
T Consensus 5 ~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~-~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~ 83 (178)
T 2hxs_A 5 RQLKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLP-GNLNVTLQIWDIGGQTIGGKMLDKYIYGAQGV 83 (178)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHGGGTTHHHHHTTTSSEEEEEEEET-TTEEEEEEEEECTTCCTTCTTHHHHHTTCSEE
T ss_pred ceEEEEEECcCCCCHHHHHHHHHhCcCCCCCCCceeEEEEEEEEEeC-CCCEEEEEEEECCCCccccchhhHHHhhCCEE
Confidence 478997 9999999 666655 55667788999988888888888 62 33 99999999999999999999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHHHhC---CccCccccceEEEEeeCCCcCCCCCCCHHHHHHHHhhhC
Q psy15036 112 LLIFDVTNENSFKDVEKWLLQIKVMDG---ALFTHFELQIVFMRGCLELLQRCREVVTPDQIMFGSTQS 177 (179)
Q Consensus 112 ilvyDit~~~Sf~~l~~w~~~i~~~~~---~~~~~~~~~~iilvGnK~Dl~~~r~Vs~~e~~~~a~~~~ 177 (179)
++|||+++++||+++..|+..+.+... .. |+++|||||+|+.++|.++.+++++++++.+
T Consensus 84 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~------~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~ 146 (178)
T 2hxs_A 84 LLVYDITNYQSFENLEDWYTVVKKVSEESETQ------PLVALVGNKIDLEHMRTIKPEKHLRFCQENG 146 (178)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHHHHHTCC------CEEEEEEECGGGGGGCSSCHHHHHHHHHHHT
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHhcccCCC------CeEEEEEEccccccccccCHHHHHHHHHHcC
Confidence 999999999999999999999987542 22 5688999999999889999999999998754
No 20
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=99.90 E-value=9.5e-24 Score=162.88 Aligned_cols=131 Identities=14% Similarity=0.134 Sum_probs=104.0
Q ss_pred cCceeeEEE-EeCCCCc---eeEeeec---cCCCcccCcceeeeeEEEEEecCCCee----eeCCCchh-chhhhhhhhc
Q psy15036 39 EFSFNFGTQ-LGRRGIP---LLKHLKY---LGTGTHGKTVGIVFPAISVTYSIGPRY----FRFPLVSR-FLSLTTGLYR 106 (179)
Q Consensus 39 ~~~~~~Kiv-lG~~gvG---~~~~~~~---~~~~~~~~Ti~~~~~~k~v~~~~~~~i----wDt~G~e~-~~~~~~~~~~ 106 (179)
..+..+||+ ||++||| ++.++.+ .+.+. .+++|.++..+.+.++ +..+ |||+|++. +..+.+.|++
T Consensus 33 ~~~~~~kVvlvG~~~vGKSSLl~r~~~~~~~~~~~-~~~~g~d~~~~~i~~~-~~~~~l~~~Dt~g~~~~~~~l~~~~~~ 110 (211)
T 2g3y_A 33 SGNTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSD-CEVLGEDTYERTLMVD-GESATIILLDMWENKGENEWLHDHCMQ 110 (211)
T ss_dssp --CCEEEEEEECCTTSSHHHHHHHHHCCCCTTCCC----CCTTEEEEEEEET-TEEEEEEEECCTTTTHHHHHHHHCCCC
T ss_pred cCCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCc-CCccceeeEEEEEEEC-CeeeEEEEeecCCCcchhhhHHHHHHh
Confidence 455679998 9999999 6666652 22333 3557778877888888 7764 99999987 6678888999
Q ss_pred CCcEEEEEEeCCChhhHHHHHHHHHHHHHHhC-CccCccccceEEEEeeCCCcCCCCCCCHHHHHHHHhhhC
Q psy15036 107 GTMGFLLIFDVTNENSFKDVEKWLLQIKVMDG-ALFTHFELQIVFMRGCLELLQRCREVVTPDQIMFGSTQS 177 (179)
Q Consensus 107 ~~~~vilvyDit~~~Sf~~l~~w~~~i~~~~~-~~~~~~~~~~iilvGnK~Dl~~~r~Vs~~e~~~~a~~~~ 177 (179)
.++++|+|||+++++||+++..|+.++.+... .+ .|++|||||+||.++|+|+.++++.+|....
T Consensus 111 ~a~~~ilVydvt~~~sf~~~~~~~~~l~~~~~~~~------~piilVgNK~DL~~~r~v~~~e~~~~a~~~~ 176 (211)
T 2g3y_A 111 VGDAYLIVYSITDRASFEKASELRIQLRRARQTED------IPIILVGNKSDLVRCREVSVSEGRACAVVFD 176 (211)
T ss_dssp CCSEEEEEEETTCHHHHHHHHHHHHHHHTSGGGTT------SCEEEEEECTTCGGGCCSCHHHHHHHHHHHT
T ss_pred hCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCC------CcEEEEEEChHHhcCceEeHHHHHHHHHHcC
Confidence 99999999999999999999999998876432 23 6899999999998889999999999987654
No 21
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=99.90 E-value=2.5e-23 Score=156.44 Aligned_cols=128 Identities=13% Similarity=0.134 Sum_probs=105.1
Q ss_pred ceeeEEE-EeCCCCc---eeEeee-ccCCCcccCcceeeeeEEEEEecCCCee----eeCCCchhchhhhhhhhcCCcEE
Q psy15036 41 SFNFGTQ-LGRRGIP---LLKHLK-YLGTGTHGKTVGIVFPAISVTYSIGPRY----FRFPLVSRFLSLTTGLYRGTMGF 111 (179)
Q Consensus 41 ~~~~Kiv-lG~~gvG---~~~~~~-~~~~~~~~~Ti~~~~~~k~v~~~~~~~i----wDt~G~e~~~~~~~~~~~~~~~v 111 (179)
...+||+ +|+.||| ++.++. ..+...+.+|++..+. +.+.++ +..+ |||+|+++|..+ ..|+++++++
T Consensus 19 ~~~~ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~t~~~~~~-~~~~~~-~~~~~l~i~Dt~G~~~~~~~-~~~~~~~~~~ 95 (187)
T 3c5c_A 19 PLEVNLAILGRRGAGKSALTVKFLTKRFISEYDPNLEDTYS-SEETVD-HQPVHLRVMDTADLDTPRNC-ERYLNWAHAF 95 (187)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHHSSCCSCCCTTCCEEEE-EEEEET-TEEEEEEEEECCC---CCCT-HHHHTTCSEE
T ss_pred CceEEEEEECCCCCcHHHHHHHHHhCCCCcccCCCccceee-EEEEEC-CEEEEEEEEECCCCCcchhH-HHHHhhCCEE
Confidence 3579997 9999999 665555 5577888999997763 556677 6655 999999999886 5699999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHHHhC---CccCccccceEEEEeeCCCcCCCCCCCHHHHHHHHhhhC
Q psy15036 112 LLIFDVTNENSFKDVEKWLLQIKVMDG---ALFTHFELQIVFMRGCLELLQRCREVVTPDQIMFGSTQS 177 (179)
Q Consensus 112 ilvyDit~~~Sf~~l~~w~~~i~~~~~---~~~~~~~~~~iilvGnK~Dl~~~r~Vs~~e~~~~a~~~~ 177 (179)
++|||+++++||+++..|+.++.+... .+ .|++|||||+|+.++|+++.++++++|++.+
T Consensus 96 ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~------~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~ 158 (187)
T 3c5c_A 96 LVVYSVDSRQSFDSSSSYLELLALHAKETQRS------IPALLLGNKLDMAQYRQVTKAEGVALAGRFG 158 (187)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHHHHHCCC------CCEEEEEECGGGGGGCSSCHHHHHHHHHHHT
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHhhccCCC------CCEEEEEECcchhhcCccCHHHHHHHHHHcC
Confidence 999999999999999999999987642 23 6889999999999889999999999998764
No 22
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=99.90 E-value=6.7e-23 Score=150.16 Aligned_cols=131 Identities=20% Similarity=0.326 Sum_probs=113.5
Q ss_pred CceeeEEE-EeCCCCc---eeEeee-ccCCCcccCcceeeeeEEEEEecCCCee----eeCCCchhchhhhhhhhcCCcE
Q psy15036 40 FSFNFGTQ-LGRRGIP---LLKHLK-YLGTGTHGKTVGIVFPAISVTYSIGPRY----FRFPLVSRFLSLTTGLYRGTMG 110 (179)
Q Consensus 40 ~~~~~Kiv-lG~~gvG---~~~~~~-~~~~~~~~~Ti~~~~~~k~v~~~~~~~i----wDt~G~e~~~~~~~~~~~~~~~ 110 (179)
+...+||+ +|+.||| +++.+. ..+...+.+|++.++..+.+.++ +..+ |||+|++++..+...+++++|+
T Consensus 3 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~ 81 (170)
T 1z0j_A 3 ALRELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQ-NELHKFLIWDTAGLERFRALAPMYYRGSAA 81 (170)
T ss_dssp SEEEEEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEET-TEEEEEEEEEECCSGGGGGGTHHHHTTCSE
T ss_pred CCcceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEEC-CeEEEEEEEcCCCchhhhcccHhhCcCCCE
Confidence 34679997 9999999 666655 44567788999988887888887 6544 9999999999999999999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCCCCCCCHHHHHHHHhhhC
Q psy15036 111 FLLIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQRCREVVTPDQIMFGSTQS 177 (179)
Q Consensus 111 vilvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~~r~Vs~~e~~~~a~~~~ 177 (179)
+++|||+++++||+.+..|+..+.+..... .|+++||||+|+.+.++++.+++++++++..
T Consensus 82 ~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~------~~iilv~nK~Dl~~~~~v~~~~~~~~~~~~~ 142 (170)
T 1z0j_A 82 AIIVYDITKEETFSTLKNWVRELRQHGPPS------IVVAIAGNKCDLTDVREVMERDAKDYADSIH 142 (170)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHHSCTT------SEEEEEEECTTCGGGCCSCHHHHHHHHHHTT
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHhCCCC------CcEEEEEECCccccccccCHHHHHHHHHHcC
Confidence 999999999999999999999998875554 7899999999999889999999999988654
No 23
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=99.90 E-value=1.7e-23 Score=157.93 Aligned_cols=143 Identities=21% Similarity=0.332 Sum_probs=108.6
Q ss_pred ccccccccccccccccCceeeEEE-EeCCCCc---eeEeee-ccCCCcccCcceeeeeEEEEEecCCCee----eeCCCc
Q psy15036 24 PTYRCTKVTKMTAAKEFSFNFGTQ-LGRRGIP---LLKHLK-YLGTGTHGKTVGIVFPAISVTYSIGPRY----FRFPLV 94 (179)
Q Consensus 24 ~~~~~~~~~~m~~~~~~~~~~Kiv-lG~~gvG---~~~~~~-~~~~~~~~~Ti~~~~~~k~v~~~~~~~i----wDt~G~ 94 (179)
+..-|.+...... ..+..+||+ +|+.||| ++..+. ..+...+.+|++.++..+.+.++ +..+ ||++|+
T Consensus 9 ~~~~~~~~~~~p~--~~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~-~~~~~l~l~Dt~G~ 85 (192)
T 2il1_A 9 HHSSGLVPRGSPR--PADFKLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELR-GKKIRLQIWDTAGQ 85 (192)
T ss_dssp ---------------CCSEEEEEEEECSTTSSHHHHHHHHCC--------CCTTEEEEEEEEEET-TEEEEEEEEEECCS
T ss_pred ccccccCCCCCCc--ccCCceEEEEECCCCCCHHHHHHHHhcCCCCcCCCCccceeEEEEEEEEC-CeEEEEEEEeCCCc
Confidence 4445555444333 456789997 9999999 666655 45567788999988888888888 7544 999999
Q ss_pred hhchhhhhhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCCCCCCCHHHHHHHHh
Q psy15036 95 SRFLSLTTGLYRGTMGFLLIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQRCREVVTPDQIMFGS 174 (179)
Q Consensus 95 e~~~~~~~~~~~~~~~vilvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~~r~Vs~~e~~~~a~ 174 (179)
+++..+...+++++|++|+|||+++++||+.+..|+..+......+ .|++|||||+|+.+.|+++.++++++++
T Consensus 86 ~~~~~~~~~~~~~~d~iilV~D~~~~~s~~~~~~~~~~i~~~~~~~------~piilV~NK~Dl~~~~~v~~~~~~~~~~ 159 (192)
T 2il1_A 86 ERFNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASED------AELLLVGNKLDCETDREITRQQGEKFAQ 159 (192)
T ss_dssp GGGHHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTT------CEEEEEEECGGGGGGCCSCHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCC------CcEEEEEECcccccccccCHHHHHHHHH
Confidence 9999999999999999999999999999999999999998876654 6899999999999889999999999997
Q ss_pred h
Q psy15036 175 T 175 (179)
Q Consensus 175 ~ 175 (179)
+
T Consensus 160 ~ 160 (192)
T 2il1_A 160 Q 160 (192)
T ss_dssp T
T ss_pred h
Confidence 6
No 24
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=99.90 E-value=1.9e-23 Score=161.22 Aligned_cols=132 Identities=21% Similarity=0.414 Sum_probs=107.4
Q ss_pred cCceeeEEE-EeCCCCc---eeEeee-ccCCCcccCcceeeeeEEEEEecCCCee----eeCCCchhchhhhhhhhcCCc
Q psy15036 39 EFSFNFGTQ-LGRRGIP---LLKHLK-YLGTGTHGKTVGIVFPAISVTYSIGPRY----FRFPLVSRFLSLTTGLYRGTM 109 (179)
Q Consensus 39 ~~~~~~Kiv-lG~~gvG---~~~~~~-~~~~~~~~~Ti~~~~~~k~v~~~~~~~i----wDt~G~e~~~~~~~~~~~~~~ 109 (179)
.+++.+||+ +|+.+|| ++..+. ..+...+.+|++.++..+.+.++ +..+ |||+|+++|..++..+++.++
T Consensus 9 ~~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~-~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d 87 (223)
T 3cpj_B 9 DYDLLFKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIE-GKRIKAQIWDTAGQERYRAITSAYYRGAV 87 (223)
T ss_dssp -CCEEEEEEEESCTTSSHHHHHHHHHHCCCCC------CCSEEEEEEEET-TEEEEEEEECCTTTTTTTCCCGGGTTTCC
T ss_pred CCCeeeEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEEC-CEEEEEEEEECCCccchhhhHHHHhccCC
Confidence 346789998 9999999 666655 55667788999998888888888 7544 999999999999999999999
Q ss_pred EEEEEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCCCCCCCHHHHHHHHhhhC
Q psy15036 110 GFLLIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQRCREVVTPDQIMFGSTQS 177 (179)
Q Consensus 110 ~vilvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~~r~Vs~~e~~~~a~~~~ 177 (179)
++|+|||+++++||+.+..|+..+....... .|++|||||+|+.+.|+++.+++.+++++..
T Consensus 88 ~vilV~D~~~~~s~~~~~~~l~~i~~~~~~~------~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~ 149 (223)
T 3cpj_B 88 GALIVYDISKSSSYENCNHWLSELRENADDN------VAVGLIGNKSDLAHLRAVPTEESKTFAQENQ 149 (223)
T ss_dssp EEEEEEC-CCHHHHHHHHHHHHHHHHHCC--------CEEEEEECCGGGGGGCCSCHHHHHHHHHHTT
T ss_pred EEEEEEeCCCHHHHHHHHHHHHHHHHhCCCC------CeEEEEEECcccccccccCHHHHHHHHHHcC
Confidence 9999999999999999999999998876544 6899999999999889999999999998754
No 25
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=99.90 E-value=3.3e-23 Score=155.81 Aligned_cols=137 Identities=26% Similarity=0.468 Sum_probs=115.4
Q ss_pred ccccccCceeeEEE-EeCCCCc---eeEeee-ccCCCcccCcceeeeeEEEEEecCCCee----eeCCCchhchhhhhhh
Q psy15036 34 MTAAKEFSFNFGTQ-LGRRGIP---LLKHLK-YLGTGTHGKTVGIVFPAISVTYSIGPRY----FRFPLVSRFLSLTTGL 104 (179)
Q Consensus 34 m~~~~~~~~~~Kiv-lG~~gvG---~~~~~~-~~~~~~~~~Ti~~~~~~k~v~~~~~~~i----wDt~G~e~~~~~~~~~ 104 (179)
+...++++..+||+ +|+.||| +++++. ..+...+.+|++.++..+.+.++ +..+ ||++|+++|..+...+
T Consensus 16 ~~~~~~~~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~-~~~~~~~i~Dt~G~~~~~~~~~~~ 94 (193)
T 2oil_A 16 PRGSEDYNFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLG-TAAVKAQIWDTAGLERYRAITSAY 94 (193)
T ss_dssp ----CCCSEEEEEEEESSTTSSHHHHHHHHHHSCCCSSCCCCSSEEEEEEEEEET-TEEEEEEEEEESCCCTTCTTHHHH
T ss_pred cccccccCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEEC-CEEEEEEEEeCCCchhhhhhhHHH
Confidence 34445678899997 9999999 666655 45667788999988887888777 6554 9999999999999999
Q ss_pred hcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCCCCCCCHHHHHHHHhhhC
Q psy15036 105 YRGTMGFLLIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQRCREVVTPDQIMFGSTQS 177 (179)
Q Consensus 105 ~~~~~~vilvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~~r~Vs~~e~~~~a~~~~ 177 (179)
+++++++|+|||++++.+|+.+..|+..+....... .|+++|+||+|+.+.+.+..+++++++++.+
T Consensus 95 ~~~~d~vi~v~D~~~~~s~~~~~~~l~~i~~~~~~~------~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~ 161 (193)
T 2oil_A 95 YRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEAT------IVVMLVGNKSDLSQAREVPTEEARMFAENNG 161 (193)
T ss_dssp HTTCCEEEEEEETTCHHHHHTHHHHHHHHHTTSCTT------CEEEEEEECGGGGGGCCSCHHHHHHHHHHTT
T ss_pred hccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCC------CeEEEEEECCCcccccccCHHHHHHHHHHcC
Confidence 999999999999999999999999999998765444 6899999999998888999999999997654
No 26
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=99.90 E-value=1.7e-23 Score=158.96 Aligned_cols=134 Identities=24% Similarity=0.379 Sum_probs=105.3
Q ss_pred cccCceeeEEE-EeCCCCc---eeEeee-ccCCCcccCcceeeeeEEEEEecCCCee----eeCCCchhchhhhhhhhcC
Q psy15036 37 AKEFSFNFGTQ-LGRRGIP---LLKHLK-YLGTGTHGKTVGIVFPAISVTYSIGPRY----FRFPLVSRFLSLTTGLYRG 107 (179)
Q Consensus 37 ~~~~~~~~Kiv-lG~~gvG---~~~~~~-~~~~~~~~~Ti~~~~~~k~v~~~~~~~i----wDt~G~e~~~~~~~~~~~~ 107 (179)
.++++..+||+ +|+.+|| +++.+. ..+...+.+|++.++..+.+.++ +..+ ||++|+++|..+...+++.
T Consensus 19 ~~~~~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~-~~~~~l~l~Dt~G~~~~~~~~~~~~~~ 97 (200)
T 2o52_A 19 SIWSDFLFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVG-GKTVKLQIWDTAGQERFRSVTRSYYRG 97 (200)
T ss_dssp ---CCEEEEEEEEESTTSSHHHHHHHHHC------------CCEEEEEEEET-TEEEEEEEECCTTHHHHSCCCHHHHTT
T ss_pred ccccCcceEEEEECcCCCCHHHHHHHHHhCCCCccCCCcccceeEEEEEEEC-CeeeEEEEEcCCCcHhHHHHHHHHhcc
Confidence 34567889998 9999999 655555 55667788999988888888887 7544 9999999999999999999
Q ss_pred CcEEEEEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCCCCCCCHHHHHHHHhhhC
Q psy15036 108 TMGFLLIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQRCREVVTPDQIMFGSTQS 177 (179)
Q Consensus 108 ~~~vilvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~~r~Vs~~e~~~~a~~~~ 177 (179)
+|++|+|||+++++||+.+..|+..+......+ .|++|||||+|+.+++.++.+++.+++++..
T Consensus 98 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~------~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~ 161 (200)
T 2o52_A 98 AAGALLVYDITSRETYNSLAAWLTDARTLASPN------IVVILCGNKKDLDPEREVTFLEASRFAQENE 161 (200)
T ss_dssp CSEEEEEEETTCHHHHHTHHHHHHHHHHHTCTT------CEEEEEEECGGGGGGCCSCHHHHHHHHHHTT
T ss_pred CCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCC------CcEEEEEECCCcccccccCHHHHHHHHHHcC
Confidence 999999999999999999999999998876554 6899999999998889999999999988754
No 27
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=99.90 E-value=3.9e-23 Score=158.14 Aligned_cols=130 Identities=15% Similarity=0.142 Sum_probs=109.2
Q ss_pred cCceeeEEE-EeCCCCc---eeEeee-ccCCCcccCcceeeeeEEEEEecCCCee----eeCCCchhchhhhhhhhcCCc
Q psy15036 39 EFSFNFGTQ-LGRRGIP---LLKHLK-YLGTGTHGKTVGIVFPAISVTYSIGPRY----FRFPLVSRFLSLTTGLYRGTM 109 (179)
Q Consensus 39 ~~~~~~Kiv-lG~~gvG---~~~~~~-~~~~~~~~~Ti~~~~~~k~v~~~~~~~i----wDt~G~e~~~~~~~~~~~~~~ 109 (179)
..+..+||+ +|+.||| +++++. ..+...+.||++.++ .+.+.++ +..+ |||+|+++|..++..++++++
T Consensus 24 ~~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~-~~~~~~~-~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d 101 (205)
T 1gwn_A 24 NQNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY-TASFEID-TQRIELSLWDTSGSPYYDNVRPLSYPDSD 101 (205)
T ss_dssp ---CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEE-EEEEESS-SSEEEEEEEEECCSGGGTTTGGGGCTTCS
T ss_pred ccceeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeE-EEEEEEC-CEEEEEEEEeCCCcHhhhHHHHhhccCCC
Confidence 445689998 9999999 666655 556777889998776 4667777 7655 999999999999999999999
Q ss_pred EEEEEEeCCChhhHHHH-HHHHHHHHHHhCCccCccccceEEEEeeCCCcCC------------CCCCCHHHHHHHHhhh
Q psy15036 110 GFLLIFDVTNENSFKDV-EKWLLQIKVMDGALFTHFELQIVFMRGCLELLQR------------CREVVTPDQIMFGSTQ 176 (179)
Q Consensus 110 ~vilvyDit~~~Sf~~l-~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~------------~r~Vs~~e~~~~a~~~ 176 (179)
++|+|||+++++||+++ ..|+..+++..+. .|++|||||+|+.+ +|.|+.++++++|++.
T Consensus 102 ~~ilv~D~~~~~s~~~~~~~~~~~i~~~~~~-------~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 174 (205)
T 1gwn_A 102 AVLICFDISRPETLDSVLKKWKGEIQEFCPN-------TKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQI 174 (205)
T ss_dssp EEEEEEETTCHHHHHHHHHTHHHHHHHHCTT-------CEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHH
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHHHCCC-------CCEEEEEechhhccchhhhhhhcccccCCCCHHHHHHHHHHc
Confidence 99999999999999999 7999999877544 68999999999974 4789999999999876
Q ss_pred C
Q psy15036 177 S 177 (179)
Q Consensus 177 ~ 177 (179)
+
T Consensus 175 ~ 175 (205)
T 1gwn_A 175 G 175 (205)
T ss_dssp T
T ss_pred C
Confidence 4
No 28
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=99.90 E-value=5.5e-23 Score=153.03 Aligned_cols=132 Identities=14% Similarity=0.140 Sum_probs=112.4
Q ss_pred cCceeeEEE-EeCCCCc---eeEeee-ccCCCcccCcceeeeeEEEEEecCCCee----eeCCCchhchhhhhhhhcCCc
Q psy15036 39 EFSFNFGTQ-LGRRGIP---LLKHLK-YLGTGTHGKTVGIVFPAISVTYSIGPRY----FRFPLVSRFLSLTTGLYRGTM 109 (179)
Q Consensus 39 ~~~~~~Kiv-lG~~gvG---~~~~~~-~~~~~~~~~Ti~~~~~~k~v~~~~~~~i----wDt~G~e~~~~~~~~~~~~~~ 109 (179)
.....+||+ +|+.||| ++..+. ..+...+.+|++..+ .+.+.++ +..+ ||++|+++|..+...+++++|
T Consensus 14 ~~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~-~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d 91 (183)
T 3kkq_A 14 ENLPTYKLVVVGDGGVGKSALTIQFFQKIFVDDYDPTIEDSY-LKHTEID-NQWAILDVLDTAGQEEFSAMREQYMRTGD 91 (183)
T ss_dssp CCCCEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEET-TEEEEEEEEECCSCGGGCSSHHHHHHHCS
T ss_pred cCCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcccee-EEEEEeC-CcEEEEEEEECCCchhhHHHHHHHHhcCC
Confidence 344689997 9999999 555555 556778889998777 5677777 7655 999999999999999999999
Q ss_pred EEEEEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCCCCCCCHHHHHHHHhhhC
Q psy15036 110 GFLLIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQRCREVVTPDQIMFGSTQS 177 (179)
Q Consensus 110 ~vilvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~~r~Vs~~e~~~~a~~~~ 177 (179)
++++|||+++++||+++..|+..+.+..... ..|+++||||+|+.++|.++.+++++++++..
T Consensus 92 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~-----~~p~ilv~nK~Dl~~~~~v~~~~~~~~~~~~~ 154 (183)
T 3kkq_A 92 GFLIVYSVTDKASFEHVDRFHQLILRVKDRE-----SFPMILVANKVDLMHLRKVTRDQGKEMATKYN 154 (183)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHHTSS-----CCCEEEEEECTTCSTTCCSCHHHHHHHHHHHT
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhcCCC-----CCcEEEEEECCCchhccCcCHHHHHHHHHHhC
Confidence 9999999999999999999999997754321 16889999999999999999999999998765
No 29
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=99.90 E-value=5.8e-23 Score=153.70 Aligned_cols=128 Identities=15% Similarity=0.149 Sum_probs=108.8
Q ss_pred ceeeEEE-EeCCCCc---eeEeee-ccCCCcccCcceeeeeEEEEEecCCCee----eeCCCchhchhhhhhhhcCCcEE
Q psy15036 41 SFNFGTQ-LGRRGIP---LLKHLK-YLGTGTHGKTVGIVFPAISVTYSIGPRY----FRFPLVSRFLSLTTGLYRGTMGF 111 (179)
Q Consensus 41 ~~~~Kiv-lG~~gvG---~~~~~~-~~~~~~~~~Ti~~~~~~k~v~~~~~~~i----wDt~G~e~~~~~~~~~~~~~~~v 111 (179)
...+||+ +|+.||| +++++. ..+...+.||++..+ .+.+.++ +..+ ||++|+++|..++..++++++++
T Consensus 5 ~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~-~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ 82 (184)
T 1m7b_A 5 NVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY-TASFEID-TQRIELSLWDTSGSPYYDNVRPLSYPDSDAV 82 (184)
T ss_dssp -CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEE-EEEEECS-SCEEEEEEEEECCSGGGTTTGGGGCTTCSEE
T ss_pred ceEEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeE-EEEEEEC-CEEEEEEEEECCCChhhhhhHHhhcCCCcEE
Confidence 4579997 9999999 666655 556778899998776 4567777 7655 99999999999999999999999
Q ss_pred EEEEeCCChhhHHHH-HHHHHHHHHHhCCccCccccceEEEEeeCCCcCC------------CCCCCHHHHHHHHhhhC
Q psy15036 112 LLIFDVTNENSFKDV-EKWLLQIKVMDGALFTHFELQIVFMRGCLELLQR------------CREVVTPDQIMFGSTQS 177 (179)
Q Consensus 112 ilvyDit~~~Sf~~l-~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~------------~r~Vs~~e~~~~a~~~~ 177 (179)
|+|||+++++||+++ ..|+..+.+..+. .|++|||||+|+.+ +|.|+.+++.++|++.+
T Consensus 83 i~v~d~~~~~s~~~~~~~~~~~i~~~~~~-------~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 154 (184)
T 1m7b_A 83 LICFDISRPETLDSVLKKWKGEIQEFCPN-------TKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIG 154 (184)
T ss_dssp EEEEETTCHHHHHHHHHTHHHHHHHHCTT-------CEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHT
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHHCCC-------CCEEEEEEcchhhcchhhHhhhhhcccCCCCHHHHHHHHHHcC
Confidence 999999999999999 7999999877544 68999999999975 37899999999998764
No 30
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=99.90 E-value=7.7e-23 Score=149.64 Aligned_cols=129 Identities=20% Similarity=0.315 Sum_probs=112.4
Q ss_pred eeeEEE-EeCCCCc---eeEeee-ccCCCcccCcceeeeeEEEEEecCCCee----eeCCCchhchhhhhhhhcCCcEEE
Q psy15036 42 FNFGTQ-LGRRGIP---LLKHLK-YLGTGTHGKTVGIVFPAISVTYSIGPRY----FRFPLVSRFLSLTTGLYRGTMGFL 112 (179)
Q Consensus 42 ~~~Kiv-lG~~gvG---~~~~~~-~~~~~~~~~Ti~~~~~~k~v~~~~~~~i----wDt~G~e~~~~~~~~~~~~~~~vi 112 (179)
..+||+ +|+.||| ++..+. ..+...+.+|++.++..+.+.++ +..+ ||++|+++|..+...+++++|+++
T Consensus 5 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i 83 (170)
T 1r2q_A 5 CQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLD-DTTVKFEIWDTAGQERYHSLAPMYYRGAQAAI 83 (170)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEET-TEEEEEEEEEECCSGGGGGGHHHHHTTCSEEE
T ss_pred ceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEEC-CEEEEEEEEeCCCcHHhhhhhHHhccCCCEEE
Confidence 478997 9999999 666655 55677788999988887888887 6554 999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCCCCCCCHHHHHHHHhhhC
Q psy15036 113 LIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQRCREVVTPDQIMFGSTQS 177 (179)
Q Consensus 113 lvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~~r~Vs~~e~~~~a~~~~ 177 (179)
+|||+++++||+.+..|+..+.+..... .|+++||||+|+.+++.++.+++.+++++..
T Consensus 84 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~------~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~ 142 (170)
T 1r2q_A 84 VVYDITNEESFARAKNWVKELQRQASPN------IVIALSGNKADLANKRAVDFQEAQSYADDNS 142 (170)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHSCTT------CEEEEEEECGGGGGGCCSCHHHHHHHHHHTT
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhcCCC------CcEEEEEECccCccccccCHHHHHHHHHHcC
Confidence 9999999999999999999998876554 6899999999998889999999999987654
No 31
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=99.90 E-value=4.2e-23 Score=156.26 Aligned_cols=129 Identities=14% Similarity=0.145 Sum_probs=85.5
Q ss_pred eeeEEE-EeCCCCc---eeEeee-c--cCCCcccCcceeeeeEEEEEecCCC--ee----eeCCCchhchhhhhhhhcCC
Q psy15036 42 FNFGTQ-LGRRGIP---LLKHLK-Y--LGTGTHGKTVGIVFPAISVTYSIGP--RY----FRFPLVSRFLSLTTGLYRGT 108 (179)
Q Consensus 42 ~~~Kiv-lG~~gvG---~~~~~~-~--~~~~~~~~Ti~~~~~~k~v~~~~~~--~i----wDt~G~e~~~~~~~~~~~~~ 108 (179)
..+||+ +|+.||| ++..+. . .+...+.+|++.++..+.+.++ +. .+ ||++|+++|..+...+++++
T Consensus 19 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~-~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~ 97 (208)
T 2yc2_C 19 LRCKVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIP-DTTVSVELFLLDTAGSDLYKEQISQYWNGV 97 (208)
T ss_dssp EEEEEEEC----------------------------------CEEEECT-TSSEEEEEEEEETTTTHHHHHHHSTTCCCC
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCCCcccCCCCCccceEEEEEEEEEC-CcccEEEEEEEECCCcHHHHHHHHHHHhhC
Confidence 578997 9999999 666665 3 4667888999988888888888 76 33 99999999999999999999
Q ss_pred cEEEEEEeCCChhhHHHHHHHHHHHHHHhC---CccCccccceEEEEeeCCCcCC-CCCCCHHHHHHHHhhhC
Q psy15036 109 MGFLLIFDVTNENSFKDVEKWLLQIKVMDG---ALFTHFELQIVFMRGCLELLQR-CREVVTPDQIMFGSTQS 177 (179)
Q Consensus 109 ~~vilvyDit~~~Sf~~l~~w~~~i~~~~~---~~~~~~~~~~iilvGnK~Dl~~-~r~Vs~~e~~~~a~~~~ 177 (179)
|++|+|||+++++||+.+..|+..+..... .. .|+++||||+|+.+ +|.++.+++++++++.+
T Consensus 98 d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~------~piilv~nK~Dl~~~~~~v~~~~~~~~~~~~~ 164 (208)
T 2yc2_C 98 YYAILVFDVSSMESFESCKAWFELLKSARPDRERP------LRAVLVANKTDLPPQRHQVRLDMAQDWATTNT 164 (208)
T ss_dssp CEEEEEEETTCHHHHHHHHHHHHHHHHHCSCTTSC------CEEEEEEECC-------CCCHHHHHHHHHHTT
T ss_pred cEEEEEEECCCHHHHHHHHHHHHHHHHhhcccccC------CcEEEEEECcccchhhccCCHHHHHHHHHHcC
Confidence 999999999999999999999999998765 33 68999999999988 89999999999998754
No 32
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=99.89 E-value=1e-22 Score=152.04 Aligned_cols=133 Identities=28% Similarity=0.391 Sum_probs=114.4
Q ss_pred ccCceeeEEE-EeCCCCc---eeEeee-ccCCCcccCcceeeee-EEEEEecCCC---------e--e--eeCCCchhch
Q psy15036 38 KEFSFNFGTQ-LGRRGIP---LLKHLK-YLGTGTHGKTVGIVFP-AISVTYSIGP---------R--Y--FRFPLVSRFL 98 (179)
Q Consensus 38 ~~~~~~~Kiv-lG~~gvG---~~~~~~-~~~~~~~~~Ti~~~~~-~k~v~~~~~~---------~--i--wDt~G~e~~~ 98 (179)
+++++.+||+ +|+.||| +++.+. ..+...+.+|++.++. .+.+.++ +. . + ||++|++++.
T Consensus 6 ~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~Dt~G~~~~~ 84 (195)
T 3bc1_A 6 GDYDYLIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRA-NGPDGAVGRGQRIHLQLWDTAGLERFR 84 (195)
T ss_dssp CCCSEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEECT-TSCCCSSCCCEEEEEEEEEECCSGGGH
T ss_pred cccceeEEEEEECCCCCCHHHHHHHHhcCCCCcCcccccceeeeeEEEEEec-CCcccccccCcEEEEEEEeCCCcHHHH
Confidence 3677899998 9999999 666665 4566788899998887 6677777 65 3 3 9999999999
Q ss_pred hhhhhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHhC-CccCccccceEEEEeeCCCcCCCCCCCHHHHHHHHhhhC
Q psy15036 99 SLTTGLYRGTMGFLLIFDVTNENSFKDVEKWLLQIKVMDG-ALFTHFELQIVFMRGCLELLQRCREVVTPDQIMFGSTQS 177 (179)
Q Consensus 99 ~~~~~~~~~~~~vilvyDit~~~Sf~~l~~w~~~i~~~~~-~~~~~~~~~~iilvGnK~Dl~~~r~Vs~~e~~~~a~~~~ 177 (179)
.+...+++++|++|+|||++++++|+.+..|+..+..... .. .|+++|+||+|+.+++.++.+++++++++.+
T Consensus 85 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~------~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~ 158 (195)
T 3bc1_A 85 SLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSEN------PDIVLCGNKSDLEDQRAVKEEEARELAEKYG 158 (195)
T ss_dssp HHHHHTTTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSSSSS------CCEEEEEECTTCGGGCCSCHHHHHHHHHHHT
T ss_pred HHHHHHHcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCC------CCEEEEEECcccccccccCHHHHHHHHHHcC
Confidence 9999999999999999999999999999999999988764 33 6889999999999889999999999998754
No 33
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=99.89 E-value=1.1e-22 Score=151.13 Aligned_cols=129 Identities=16% Similarity=0.152 Sum_probs=110.6
Q ss_pred eeeEEE-EeCCCCc---eeEeee-ccCCCcccCcceeeeeEEEEEecCCCee----eeCCCchhchhhhhhhhcCCcEEE
Q psy15036 42 FNFGTQ-LGRRGIP---LLKHLK-YLGTGTHGKTVGIVFPAISVTYSIGPRY----FRFPLVSRFLSLTTGLYRGTMGFL 112 (179)
Q Consensus 42 ~~~Kiv-lG~~gvG---~~~~~~-~~~~~~~~~Ti~~~~~~k~v~~~~~~~i----wDt~G~e~~~~~~~~~~~~~~~vi 112 (179)
..+||+ +|+.||| ++..+. ..+...+.+|.+..+ .+.+.++ +..+ ||++|+++|..+...+++++|+++
T Consensus 5 ~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~-~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~i 82 (181)
T 3t5g_A 5 KSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTF-TKLITVN-GQEYHLQLVDTAGQDEYSIFPQTYSIDINGYI 82 (181)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEET-TEEEEEEEEECCCCCTTCCCCGGGTTTCSEEE
T ss_pred ceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCCccccE-EEEEEEC-CEEEEEEEEeCCCchhhhHHHHHHHhcCCEEE
Confidence 478997 9999999 666665 667888899999877 5777777 7554 999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCCCCCCCHHHHHHHHhhhC
Q psy15036 113 LIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQRCREVVTPDQIMFGSTQS 177 (179)
Q Consensus 113 lvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~~r~Vs~~e~~~~a~~~~ 177 (179)
+|||+++++||+.+..|+.++.+..... ..|+++||||+|+.+++.++.+++++++++..
T Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~-----~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~ 142 (181)
T 3t5g_A 83 LVYSVTSIKSFEVIKVIHGKLLDMVGKV-----QIPIMLVGNKKDLHMERVISYEEGKALAESWN 142 (181)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHC---------CCEEEEEECTTCTTTCCSCHHHHHHHHHHTT
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhcCCC-----CCCEEEEEECccchhcceecHHHHHHHHHHhC
Confidence 9999999999999999999997765431 16889999999999999999999999998765
No 34
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=99.89 E-value=8.2e-23 Score=153.31 Aligned_cols=130 Identities=22% Similarity=0.236 Sum_probs=112.4
Q ss_pred ceeeEEE-EeCCCCc---eeEeee-ccCCCcccCcceeeeeEEEEEecCCCee----eeCCCchhch-hhhhhhhcCCcE
Q psy15036 41 SFNFGTQ-LGRRGIP---LLKHLK-YLGTGTHGKTVGIVFPAISVTYSIGPRY----FRFPLVSRFL-SLTTGLYRGTMG 110 (179)
Q Consensus 41 ~~~~Kiv-lG~~gvG---~~~~~~-~~~~~~~~~Ti~~~~~~k~v~~~~~~~i----wDt~G~e~~~-~~~~~~~~~~~~ 110 (179)
...+||+ +|+.||| ++.++. ..+...+.+|++.++..+.+.++ +..+ ||++|+++|. .+...+++++|+
T Consensus 18 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~-~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~d~ 96 (189)
T 1z06_A 18 SRIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDID-GERIKIQLWDTAGQERFRKSMVQHYYRNVHA 96 (189)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSCCEEEEEEEET-TEEEEEEEEECCCSHHHHTTTHHHHHTTCCE
T ss_pred CceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCcceEEEEEEEEEC-CEEEEEEEEECCCchhhhhhhhHHHhcCCCE
Confidence 3579997 9999999 666655 55677788999998888888888 7544 9999999998 899999999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHHHhC-CccCccccceEEEEeeCCCcCCCCCCCHHHHHHHHhhhC
Q psy15036 111 FLLIFDVTNENSFKDVEKWLLQIKVMDG-ALFTHFELQIVFMRGCLELLQRCREVVTPDQIMFGSTQS 177 (179)
Q Consensus 111 vilvyDit~~~Sf~~l~~w~~~i~~~~~-~~~~~~~~~~iilvGnK~Dl~~~r~Vs~~e~~~~a~~~~ 177 (179)
+|+|||+++++||+.+..|+.++.+... .+ .|+++|+||+|+.+.|+++.+++++++++..
T Consensus 97 iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~------~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~ 158 (189)
T 1z06_A 97 VVFVYDMTNMASFHSLPAWIEECKQHLLAND------IPRILVGNKCDLRSAIQVPTDLAQKFADTHS 158 (189)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHCCCSC------CCEEEEEECTTCGGGCCSCHHHHHHHHHHTT
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHhcCCCC------CCEEEEEECccccccceeCHHHHHHHHHHcC
Confidence 9999999999999999999999988752 33 6889999999999889999999999998754
No 35
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.89 E-value=1.6e-22 Score=147.94 Aligned_cols=128 Identities=19% Similarity=0.253 Sum_probs=110.9
Q ss_pred eeEEE-EeCCCCc---eeEeee-ccCCCcccCcceeeeeEEEEEecCCCee----eeCCCchhchhhhhhhhcCCcEEEE
Q psy15036 43 NFGTQ-LGRRGIP---LLKHLK-YLGTGTHGKTVGIVFPAISVTYSIGPRY----FRFPLVSRFLSLTTGLYRGTMGFLL 113 (179)
Q Consensus 43 ~~Kiv-lG~~gvG---~~~~~~-~~~~~~~~~Ti~~~~~~k~v~~~~~~~i----wDt~G~e~~~~~~~~~~~~~~~vil 113 (179)
.+||+ +|+.||| ++..+. ..+...+.||++.++..+.+.++ +..+ ||++|++++..+...+++++|++++
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i~ 81 (170)
T 1ek0_A 3 SIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTIN-EHTVKFEIWDTAGQERFASLAPXYYRNAQAALV 81 (170)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEET-TEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEE
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEEC-CEEEEEEEEECCCChhhhhhhhhhhccCcEEEE
Confidence 58997 9999999 555555 55667788999988887888887 6654 9999999999999999999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCCC---CCCCHHHHHHHHhhhC
Q psy15036 114 IFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQRC---REVVTPDQIMFGSTQS 177 (179)
Q Consensus 114 vyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~~---r~Vs~~e~~~~a~~~~ 177 (179)
|||+++++||+++..|+..+.+....+ .|+++|+||+|+.+. +++..+++++++++.+
T Consensus 82 v~d~~~~~s~~~~~~~~~~~~~~~~~~------~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~ 142 (170)
T 1ek0_A 82 VYDVTKPQSFIKARHWVKELHEQASKD------IIIALVGNKIDXLQEGGERKVAREEGEKLAEEKG 142 (170)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHSCTT------CEEEEEEECGGGGGSSCCCCSCHHHHHHHHHHHT
T ss_pred EEecCChHHHHHHHHHHHHHHHhcCCC------CcEEEEEECCCccccccccCCCHHHHHHHHHHcC
Confidence 999999999999999999998876544 689999999999765 8899999999988754
No 36
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.89 E-value=1.3e-22 Score=150.28 Aligned_cols=132 Identities=27% Similarity=0.356 Sum_probs=105.7
Q ss_pred cCceeeEEE-EeCCCCc---eeEeee-ccC-CCcccCcceeeeeEEEEEecCCCee----eeCCCchhchhhhhhhhcCC
Q psy15036 39 EFSFNFGTQ-LGRRGIP---LLKHLK-YLG-TGTHGKTVGIVFPAISVTYSIGPRY----FRFPLVSRFLSLTTGLYRGT 108 (179)
Q Consensus 39 ~~~~~~Kiv-lG~~gvG---~~~~~~-~~~-~~~~~~Ti~~~~~~k~v~~~~~~~i----wDt~G~e~~~~~~~~~~~~~ 108 (179)
.++..+||+ +|+.+|| ++..+. ..+ ...+.+|++.++....+.++ +..+ ||++|+++|..+...+++++
T Consensus 6 ~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~t~~~~~~~~~~~~~-~~~~~~~~~Dt~G~~~~~~~~~~~~~~~ 84 (180)
T 2g6b_A 6 FYDVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVD-GVKVKLQMWDTAGQERFRSVTHAYYRDA 84 (180)
T ss_dssp CCSEEEEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEEEEEET-TEEEEEEEEECCCC--------CCGGGC
T ss_pred cCCcceEEEEECcCCCCHHHHHHHHHhCCCCCCCcCCceeeEEEEEEEEEC-CEEEEEEEEeCCCcHHHHHHHHHHccCC
Confidence 456789997 9999999 665555 333 34678999988887777787 7644 99999999999999999999
Q ss_pred cEEEEEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCCCCCCCHHHHHHHHhhhC
Q psy15036 109 MGFLLIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQRCREVVTPDQIMFGSTQS 177 (179)
Q Consensus 109 ~~vilvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~~r~Vs~~e~~~~a~~~~ 177 (179)
|++|+|||+++++||+.+..|+..+......+ .|+++|+||+|+.+++.++.+++++++++.+
T Consensus 85 d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~------~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~ 147 (180)
T 2g6b_A 85 HALLLLYDVTNKASFDNIQAWLTEIHEYAQHD------VALMLLGNKVDSAHERVVKREDGEKLAKEYG 147 (180)
T ss_dssp SEEEEEEETTCHHHHHTHHHHHHHHHHHSCTT------CEEEEEEECCSTTSCCCSCHHHHHHHHHHHT
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHhCCCC------CcEEEEEECcccCcccccCHHHHHHHHHHcC
Confidence 99999999999999999999999998876544 6899999999999889999999999998754
No 37
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=99.89 E-value=7.4e-23 Score=149.66 Aligned_cols=129 Identities=15% Similarity=0.193 Sum_probs=112.2
Q ss_pred ceeeEEE-EeCCCCc---eeEeee-ccCCCcccCcceeeeeEEEEEecCCCee----eeCCCchhchhhhhhhhcCCcEE
Q psy15036 41 SFNFGTQ-LGRRGIP---LLKHLK-YLGTGTHGKTVGIVFPAISVTYSIGPRY----FRFPLVSRFLSLTTGLYRGTMGF 111 (179)
Q Consensus 41 ~~~~Kiv-lG~~gvG---~~~~~~-~~~~~~~~~Ti~~~~~~k~v~~~~~~~i----wDt~G~e~~~~~~~~~~~~~~~v 111 (179)
++.+||+ +|+.||| ++..+. ..+...+.+|++.++..+.+.++ +..+ ||++|++++..+...+++++|++
T Consensus 3 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~-~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 81 (168)
T 1z2a_A 3 EVAIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVN-DEDVRLMLWDTAGQEEFDAITKAYYRGAQAC 81 (168)
T ss_dssp -CEEEEEEECSTTSSHHHHHHHHHHCCCCCCSSCCCSSSEEEEEEEET-TEEEEEEEECCTTGGGTTCCCHHHHTTCCEE
T ss_pred ceeEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceEEEEEEEEEEEC-CEEEEEEEEcCCCcHhHHHHHHHHhcCCCEE
Confidence 3579997 9999999 555555 55677889999988888888887 6544 99999999999999999999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCCCCCCCHHHHHHHHhhhC
Q psy15036 112 LLIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQRCREVVTPDQIMFGSTQS 177 (179)
Q Consensus 112 ilvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~~r~Vs~~e~~~~a~~~~ 177 (179)
++|||+++++||+.+..|+..+...... .|+++|+||+|+.+.++++.+++++++++.+
T Consensus 82 i~v~d~~~~~s~~~~~~~~~~i~~~~~~-------~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~ 140 (168)
T 1z2a_A 82 VLVFSTTDRESFEAISSWREKVVAEVGD-------IPTALVQNKIDLLDDSCIKNEEAEGLAKRLK 140 (168)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHHCS-------CCEEEEEECGGGGGGCSSCHHHHHHHHHHHT
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHhCCC-------CCEEEEEECcccCcccccCHHHHHHHHHHcC
Confidence 9999999999999999999999887644 6889999999999889999999999998754
No 38
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=99.89 E-value=1e-22 Score=149.24 Aligned_cols=128 Identities=22% Similarity=0.383 Sum_probs=105.0
Q ss_pred eeeEEE-EeCCCCc---eeEeee-ccCCCcccCcceeeeeEEEEEecCCCee----eeCCCchhchhhhhhhhcCCcEEE
Q psy15036 42 FNFGTQ-LGRRGIP---LLKHLK-YLGTGTHGKTVGIVFPAISVTYSIGPRY----FRFPLVSRFLSLTTGLYRGTMGFL 112 (179)
Q Consensus 42 ~~~Kiv-lG~~gvG---~~~~~~-~~~~~~~~~Ti~~~~~~k~v~~~~~~~i----wDt~G~e~~~~~~~~~~~~~~~vi 112 (179)
+.+||+ +|+.||| ++..+. ..+...+.+|++.++..+.+.++ +..+ ||++|++++..+...+++++|+++
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i 80 (170)
T 1g16_A 2 SIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDIN-GKKVKLQIWDTAGQERFRTITTAYYRGAMGII 80 (170)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHCCCCC-------CCEEEEEEESS-SCEEEEEEECCTTGGGTSCCCHHHHTTEEEEE
T ss_pred CceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEEC-CEEEEEEEEeCCCChhhhhhHHHHhccCCEEE
Confidence 468997 9999999 555555 45667788999988888888888 7654 999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCCCCCCCHHHHHHHHhhhC
Q psy15036 113 LIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQRCREVVTPDQIMFGSTQS 177 (179)
Q Consensus 113 lvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~~r~Vs~~e~~~~a~~~~ 177 (179)
+|||+++++||+.+..|+..+.+..... .|+++|+||+|+ .++.++.+++++++++.+
T Consensus 81 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~------~piilv~nK~Dl-~~~~~~~~~~~~~~~~~~ 138 (170)
T 1g16_A 81 LVYDITDERTFTNIKQWFKTVNEHANDE------AQLLLVGNKSDM-ETRVVTADQGEALAKELG 138 (170)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHSCTT------CEEEEEEECTTC-TTCCSCHHHHHHHHHHHT
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhcCCC------CcEEEEEECccC-CcCccCHHHHHHHHHHcC
Confidence 9999999999999999999998876554 689999999999 568899999999998764
No 39
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=99.89 E-value=1.5e-22 Score=152.39 Aligned_cols=131 Identities=18% Similarity=0.150 Sum_probs=110.1
Q ss_pred cCceeeEEE-EeCCCCc---eeEeee-ccCCCcccCcceeeeeEEEEEecCCCee----eeCCCchhchhhhhhhhcCCc
Q psy15036 39 EFSFNFGTQ-LGRRGIP---LLKHLK-YLGTGTHGKTVGIVFPAISVTYSIGPRY----FRFPLVSRFLSLTTGLYRGTM 109 (179)
Q Consensus 39 ~~~~~~Kiv-lG~~gvG---~~~~~~-~~~~~~~~~Ti~~~~~~k~v~~~~~~~i----wDt~G~e~~~~~~~~~~~~~~ 109 (179)
.....+||+ +|+.||| +++.+. ..+...+.+|++..+. ..+.++ +..+ |||+|+++|..++..+++++|
T Consensus 19 ~~~~~~ki~~vG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~-~~~~~~-~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d 96 (194)
T 3reg_A 19 NGKKALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFS-HVMKYK-NEEFILHLWDTAGQEEYDRLRPLSYADSD 96 (194)
T ss_dssp --CEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEEE-EEEEET-TEEEEEEEEEECCSGGGTTTGGGGCTTCS
T ss_pred ccceeeEEEEECcCCCCHHHHHHHHhcCCCCCccCCeeeeeeE-EEEEEC-CEEEEEEEEECCCcHHHHHHhHhhccCCc
Confidence 345689998 9999999 665555 5567788999997775 456677 6655 999999999999999999999
Q ss_pred EEEEEEeCCChhhHHHH-HHHHHHHHHHhCCccCccccceEEEEeeCCCcCC--CCCCCHHHHHHHHhhhCC
Q psy15036 110 GFLLIFDVTNENSFKDV-EKWLLQIKVMDGALFTHFELQIVFMRGCLELLQR--CREVVTPDQIMFGSTQSS 178 (179)
Q Consensus 110 ~vilvyDit~~~Sf~~l-~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~--~r~Vs~~e~~~~a~~~~~ 178 (179)
++|+|||+++++||+++ ..|+..+...... .|++|||||+|+.+ .|.++.+++.+++++.+.
T Consensus 97 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~-------~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~ 161 (194)
T 3reg_A 97 VVLLCFAVNNRTSFDNISTKWEPEIKHYIDT-------AKTVLVGLKVDLRKDGSDDVTKQEGDDLCQKLGC 161 (194)
T ss_dssp EEEEEEETTCHHHHHHHHHTHHHHHHHHCTT-------SEEEEEEECGGGCCTTTTCCCHHHHHHHHHHHTC
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHHhCCC-------CCEEEEEEChhhccCCCCcccHHHHHHHHHhcCC
Confidence 99999999999999998 7899999876544 68999999999975 488999999999988653
No 40
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=99.89 E-value=3.9e-23 Score=158.28 Aligned_cols=134 Identities=27% Similarity=0.391 Sum_probs=112.9
Q ss_pred cccCceeeEEE-EeCCCCc---eeEeee-ccCCCcccCcceeeeeEEEEEecCCC----------ee----eeCCCchhc
Q psy15036 37 AKEFSFNFGTQ-LGRRGIP---LLKHLK-YLGTGTHGKTVGIVFPAISVTYSIGP----------RY----FRFPLVSRF 97 (179)
Q Consensus 37 ~~~~~~~~Kiv-lG~~gvG---~~~~~~-~~~~~~~~~Ti~~~~~~k~v~~~~~~----------~i----wDt~G~e~~ 97 (179)
.+++++.+||+ +|+.+|| ++..+. ..+...+.+|++.++..+.+.++ +. .+ |||+|+++|
T Consensus 19 ~~~~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~l~Dt~G~~~~ 97 (217)
T 2f7s_A 19 SGDYDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYN-AQGPNGSSGKAFKVHLQLWDTAGQERF 97 (217)
T ss_dssp --CCSEEEEEEEESCTTSSHHHHHHHHHCSCCCCEEEEEEEEEEEEEEEEEE-C-------CCEEEEEEEEEEEESHHHH
T ss_pred CCCcceeEEEEEECcCCCCHHHHHHHHhcCCCCcCCCCceeEEEEEEEEEEC-CccccccccCceeEEEEEEECCCcHhH
Confidence 35677899998 9999999 665555 45677888999998888888887 65 33 999999999
Q ss_pred hhhhhhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHhC-CccCccccceEEEEeeCCCcCCCCCCCHHHHHHHHhhh
Q psy15036 98 LSLTTGLYRGTMGFLLIFDVTNENSFKDVEKWLLQIKVMDG-ALFTHFELQIVFMRGCLELLQRCREVVTPDQIMFGSTQ 176 (179)
Q Consensus 98 ~~~~~~~~~~~~~vilvyDit~~~Sf~~l~~w~~~i~~~~~-~~~~~~~~~~iilvGnK~Dl~~~r~Vs~~e~~~~a~~~ 176 (179)
..++..+++.+|++|+|||+++++||+.+..|+..+..... .. .|++||+||+|+.+++.++.+++++++++.
T Consensus 98 ~~~~~~~~~~~d~iilV~D~~~~~s~~~~~~~l~~i~~~~~~~~------~piilV~NK~Dl~~~~~v~~~~~~~~~~~~ 171 (217)
T 2f7s_A 98 RSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCEN------PDIVLIGNKADLPDQREVNERQARELADKY 171 (217)
T ss_dssp HHHHHHHHTTCCEEEEEEETTCHHHHHHHHHHHHTCCCCCTTTC------CEEEEEEECTTCGGGCCSCHHHHHHHHHHT
T ss_pred HhHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCcCC------CCEEEEEECCccccccccCHHHHHHHHHHC
Confidence 99999999999999999999999999999999988766543 22 689999999999988999999999999875
Q ss_pred C
Q psy15036 177 S 177 (179)
Q Consensus 177 ~ 177 (179)
.
T Consensus 172 ~ 172 (217)
T 2f7s_A 172 G 172 (217)
T ss_dssp T
T ss_pred C
Confidence 4
No 41
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=99.89 E-value=2.5e-22 Score=148.23 Aligned_cols=129 Identities=22% Similarity=0.303 Sum_probs=112.9
Q ss_pred eeeEEE-EeCCCCc---eeEeee-ccCCCcccCcceeeeeEEEEEecCCCee----eeCCCchhchhhhhhhhcCCcEEE
Q psy15036 42 FNFGTQ-LGRRGIP---LLKHLK-YLGTGTHGKTVGIVFPAISVTYSIGPRY----FRFPLVSRFLSLTTGLYRGTMGFL 112 (179)
Q Consensus 42 ~~~Kiv-lG~~gvG---~~~~~~-~~~~~~~~~Ti~~~~~~k~v~~~~~~~i----wDt~G~e~~~~~~~~~~~~~~~vi 112 (179)
..+||+ +|+.||| ++..+. ..+...+.+|++.++..+.+.++ +..+ |||+|++++..+...+++++|+++
T Consensus 13 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~i 91 (179)
T 2y8e_A 13 RKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLE-DRTVRLQLWDTAGQERFRSLIPSYIRDSTVAV 91 (179)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEEET-TEEEEEEEEEECCSGGGGGGSHHHHHTCSEEE
T ss_pred cceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeEEEEEEEEEC-CeEEEEEEEECCCcHHHHHHHHHHhcCCCEEE
Confidence 358997 9999999 666655 55677888999988888888888 7544 999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCCCCCCCHHHHHHHHhhhC
Q psy15036 113 LIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQRCREVVTPDQIMFGSTQS 177 (179)
Q Consensus 113 lvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~~r~Vs~~e~~~~a~~~~ 177 (179)
+|||+++++||+.+..|+..+......+ .|+++|+||+|+.++++++.+++..++++..
T Consensus 92 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~------~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~ 150 (179)
T 2y8e_A 92 VVYDITNTNSFHQTSKWIDDVRTERGSD------VIIMLVGNKTDLSDKRQVSTEEGERKAKELN 150 (179)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHHTTS------SEEEEEEECGGGGGGCCSCHHHHHHHHHHHT
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhcCCC------CcEEEEEECCcccccCcCCHHHHHHHHHHcC
Confidence 9999999999999999999998876554 6899999999999889999999999988754
No 42
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=99.89 E-value=4.5e-22 Score=147.01 Aligned_cols=132 Identities=23% Similarity=0.249 Sum_probs=107.5
Q ss_pred CceeeEEE-EeCCCCc---eeEeee-ccCCCcccCcceeeeeEEEEEecCCCee----eeCCCchhchhhhhhhhcCCcE
Q psy15036 40 FSFNFGTQ-LGRRGIP---LLKHLK-YLGTGTHGKTVGIVFPAISVTYSIGPRY----FRFPLVSRFLSLTTGLYRGTMG 110 (179)
Q Consensus 40 ~~~~~Kiv-lG~~gvG---~~~~~~-~~~~~~~~~Ti~~~~~~k~v~~~~~~~i----wDt~G~e~~~~~~~~~~~~~~~ 110 (179)
.+..+||+ +|+.||| ++..+. ..+...+.+|++.++..+.+.++ +..+ ||++|++++..+...+++++|+
T Consensus 4 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ 82 (177)
T 1wms_A 4 KSSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVD-GHFVTMQIWDTAGQERFRSLRTPFYRGSDC 82 (177)
T ss_dssp CEEEEEEEEECCTTSSHHHHHHHHHHSCCCC----CCSEEEEEEEEEET-TEEEEEEEEECCCCGGGHHHHGGGGTTCSE
T ss_pred ccceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEEEEEEEC-CEEEEEEEEeCCCchhhhhhHHHHHhcCCE
Confidence 34679997 9999999 666655 55677888999998888888888 7644 9999999999999999999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCCCCCCCHHHHHHHHhh
Q psy15036 111 FLLIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQRCREVVTPDQIMFGST 175 (179)
Q Consensus 111 vilvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~~r~Vs~~e~~~~a~~ 175 (179)
+++|||+++++||+.+..|+..+....... .....|+++||||+|+. +++++.+++.+++++
T Consensus 83 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~--~~~~~p~i~v~nK~Dl~-~~~~~~~~~~~~~~~ 144 (177)
T 1wms_A 83 CLLTFSVDDSQSFQNLSNWKKEFIYYADVK--EPESFPFVILGNKIDIS-ERQVSTEEAQAWCRD 144 (177)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHHTCS--CTTTSCEEEEEECTTCS-SCSSCHHHHHHHHHH
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHHcccc--ccCCCcEEEEEECCccc-ccccCHHHHHHHHHh
Confidence 999999999999999999999998776411 00116889999999998 689999999999984
No 43
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=99.89 E-value=1.8e-22 Score=148.70 Aligned_cols=129 Identities=14% Similarity=0.171 Sum_probs=99.3
Q ss_pred eeeEEE-EeCCCCc---eeEeeeccCCCcccCcceeeeeEEEEEecCCCee----eeCCCchh--chhhhhhhhcCCcEE
Q psy15036 42 FNFGTQ-LGRRGIP---LLKHLKYLGTGTHGKTVGIVFPAISVTYSIGPRY----FRFPLVSR--FLSLTTGLYRGTMGF 111 (179)
Q Consensus 42 ~~~Kiv-lG~~gvG---~~~~~~~~~~~~~~~Ti~~~~~~k~v~~~~~~~i----wDt~G~e~--~~~~~~~~~~~~~~v 111 (179)
..+||+ +|+.||| +++++.........++.|.++..+.+.++ +..+ ||++|+++ +..+...+++.++++
T Consensus 3 ~~~ki~i~G~~~vGKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~~~ 81 (175)
T 2nzj_A 3 ALYRVVLLGDPGVGKTSLASLFAGKQERDLHEQLGEDVYERTLTVD-GEDTTLVVVDTWEAEKLDKSWSQESCLQGGSAY 81 (175)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHCC-----CCCSSSSEEEEEEEET-TEEEEEEEECCC-------CHHHHHTTTSCSEE
T ss_pred eEEEEEEECCCCccHHHHHHHHhcCCCccccCccccceeEEEEEEC-CEEEEEEEEecCCCCccchhhhHHhhcccCCEE
Confidence 468997 9999999 66666644333445677777777888888 7654 99999998 677888999999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHHHhC-CccCccccceEEEEeeCCCcCCCCCCCHHHHHHHHhhhC
Q psy15036 112 LLIFDVTNENSFKDVEKWLLQIKVMDG-ALFTHFELQIVFMRGCLELLQRCREVVTPDQIMFGSTQS 177 (179)
Q Consensus 112 ilvyDit~~~Sf~~l~~w~~~i~~~~~-~~~~~~~~~~iilvGnK~Dl~~~r~Vs~~e~~~~a~~~~ 177 (179)
++|||+++++||+.+..|+..+.+... .+ .|+++||||+|+.+.|+++.++++.++.+..
T Consensus 82 i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~------~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~ 142 (175)
T 2nzj_A 82 VIVYSIADRGSFESASELRIQLRRTHQADH------VPIILVGNKADLARCREVSVEEGRACAVVFD 142 (175)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHCC----------CCEEEEEECTTCTTTCCSCHHHHHHHHHHHT
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhhccCC------CCEEEEEEChhhccccccCHHHHHHHHHHcC
Confidence 999999999999999999999887532 22 6889999999999889999999999987654
No 44
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.88 E-value=3.3e-22 Score=150.42 Aligned_cols=128 Identities=20% Similarity=0.223 Sum_probs=109.1
Q ss_pred ceeeEEE-EeCCCCc---eeEeee-ccCCCcccCcceeeeeEEEEEecCCCee----eeCCCchhchhhhhhhhcCCcEE
Q psy15036 41 SFNFGTQ-LGRRGIP---LLKHLK-YLGTGTHGKTVGIVFPAISVTYSIGPRY----FRFPLVSRFLSLTTGLYRGTMGF 111 (179)
Q Consensus 41 ~~~~Kiv-lG~~gvG---~~~~~~-~~~~~~~~~Ti~~~~~~k~v~~~~~~~i----wDt~G~e~~~~~~~~~~~~~~~v 111 (179)
...+||+ +|+.+|| ++.++. ..+...+.+|++..+ .+.+.++ +..+ ||++|+++|..+...+++++|++
T Consensus 16 ~~~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~-~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ 93 (194)
T 2atx_A 16 ALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHY-AVSVTVG-GKQYLLGLYDTAGQEDYDRLRPLSYPMTDVF 93 (194)
T ss_dssp EEEEEEEEEECTTSSHHHHHHHHHHSSCCCSCCCSSCCCE-EEEEESS-SCEEEEEEECCCCSSSSTTTGGGGCTTCSEE
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccccee-EEEEEEC-CEEEEEEEEECCCCcchhHHHHHhcCCCCEE
Confidence 4679997 9999999 665555 556778889998766 4667777 7654 99999999999999999999999
Q ss_pred EEEEeCCChhhHHHHH-HHHHHHHHHhCCccCccccceEEEEeeCCCcCCC------------CCCCHHHHHHHHhhhC
Q psy15036 112 LLIFDVTNENSFKDVE-KWLLQIKVMDGALFTHFELQIVFMRGCLELLQRC------------REVVTPDQIMFGSTQS 177 (179)
Q Consensus 112 ilvyDit~~~Sf~~l~-~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~~------------r~Vs~~e~~~~a~~~~ 177 (179)
|+|||+++++||+++. .|+..+.+..+. .|++|||||+|+.+. |.++.+++.+++++.+
T Consensus 94 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~-------~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 165 (194)
T 2atx_A 94 LICFSVVNPASFQNVKEEWVPELKEYAPN-------VPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQKLAKEIG 165 (194)
T ss_dssp EEEEETTCHHHHHHHHHTHHHHHHHHSTT-------CCEEEEEECTTSTTCHHHHHHHTTTTCCCCCHHHHHHHHHHHT
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHhCCC-------CCEEEEEEChhhcccccchhhcccccCcccCHHHHHHHHHHcC
Confidence 9999999999999997 899999887553 688999999999753 7899999999998765
No 45
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=99.88 E-value=2.7e-22 Score=148.31 Aligned_cols=129 Identities=20% Similarity=0.233 Sum_probs=109.5
Q ss_pred ceeeEEE-EeCCCCc---eeEeee-ccCCCcccCcceeeeeEEEEEecCCCee----eeCCCchhchhhhhhhhcCCcEE
Q psy15036 41 SFNFGTQ-LGRRGIP---LLKHLK-YLGTGTHGKTVGIVFPAISVTYSIGPRY----FRFPLVSRFLSLTTGLYRGTMGF 111 (179)
Q Consensus 41 ~~~~Kiv-lG~~gvG---~~~~~~-~~~~~~~~~Ti~~~~~~k~v~~~~~~~i----wDt~G~e~~~~~~~~~~~~~~~v 111 (179)
...+||+ +|+.||| +++.+. ..+...+.+|++..+. +.+.++ +..+ ||++|+++|..+...++++++++
T Consensus 7 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~-~~~~~~-~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~ 84 (181)
T 2fn4_A 7 SETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSYT-KICSVD-GIPARLDILDTAGQEEFGAMREQYMRAGHGF 84 (181)
T ss_dssp SCEEEEEEEECTTSSHHHHHHHHHHSSCCSSCCTTCCEEEE-EEEEET-TEEEEEEEEECCCTTTTSCCHHHHHHHCSEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCcCccccCCCcCceEE-EEEEEC-CEEEEEEEEECCCchhhHHHHHHHHhhCCEE
Confidence 4578997 9999999 665555 5567788899987775 667777 6544 99999999999999999999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHHHh-CCccCccccceEEEEeeCCCcCCCCCCCHHHHHHHHhhhC
Q psy15036 112 LLIFDVTNENSFKDVEKWLLQIKVMD-GALFTHFELQIVFMRGCLELLQRCREVVTPDQIMFGSTQS 177 (179)
Q Consensus 112 ilvyDit~~~Sf~~l~~w~~~i~~~~-~~~~~~~~~~~iilvGnK~Dl~~~r~Vs~~e~~~~a~~~~ 177 (179)
++|||+++++||+.+..|+.++.+.. ..+ .|+++|+||+|+.+.++++.+++++++.+..
T Consensus 85 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~------~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~ 145 (181)
T 2fn4_A 85 LLVFAINDRQSFNEVGKLFTQILRVKDRDD------FPVVLVGNKADLESQRQVPRSEASAFGASHH 145 (181)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHHTSSC------CCEEEEEECGGGGGGCCSCHHHHHHHHHHTT
T ss_pred EEEEeCCCHHHHHHHHHHHHHHHHhcCCCC------CCEEEEEECcccccccccCHHHHHHHHHHcC
Confidence 99999999999999999999996544 333 6889999999999889999999999987654
No 46
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=99.88 E-value=1.8e-23 Score=158.49 Aligned_cols=133 Identities=23% Similarity=0.387 Sum_probs=107.7
Q ss_pred ccCceeeEEE-EeCCCCc---eeEeee-ccCCCcccCcceeeeeEEEEEecCCCee----eeCCCchhchhhhhhhhcCC
Q psy15036 38 KEFSFNFGTQ-LGRRGIP---LLKHLK-YLGTGTHGKTVGIVFPAISVTYSIGPRY----FRFPLVSRFLSLTTGLYRGT 108 (179)
Q Consensus 38 ~~~~~~~Kiv-lG~~gvG---~~~~~~-~~~~~~~~~Ti~~~~~~k~v~~~~~~~i----wDt~G~e~~~~~~~~~~~~~ 108 (179)
++.++.+||+ +|+.+|| +++.+. ..+...+.+|++.++..+.+.++ +..+ ||++|++++..+...+++++
T Consensus 28 ~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~Dt~G~~~~~~~~~~~~~~~ 106 (199)
T 3l0i_B 28 PEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELD-GKTIKLQIWDTAGQERFRTITSSYYRGA 106 (199)
T ss_dssp CCCSEEEEEEEECCTTSCCTTTTTSSBCCCCCCHHHHHHCCSEEEEEEEET-TEEEEEEEECCTTCTTCCCCSCC--CCC
T ss_pred cccCcceEEEEECCCCCCHHHHHHHHhcCCCCCCcCCcccceEEEEEEEEC-CEEEEEEEEECCCcHhHHHHHHHHhhcC
Confidence 3567889998 9999999 665555 55667778899988888888888 7554 99999999999999999999
Q ss_pred cEEEEEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCCCCCCCHHHHHHHHhhhC
Q psy15036 109 MGFLLIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQRCREVVTPDQIMFGSTQS 177 (179)
Q Consensus 109 ~~vilvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~~r~Vs~~e~~~~a~~~~ 177 (179)
|++|+|||+++++||+.+..|+..+......+ .|++||+||+|+.+++.++.+++++++++..
T Consensus 107 d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~------~p~ilv~nK~Dl~~~~~v~~~~~~~~~~~~~ 169 (199)
T 3l0i_B 107 HGIIVVYDVTDQESFNNVKQWLQEIDRYASEN------VNKLLVGNKCDLTTKKVVDYTTAKEFADSLG 169 (199)
T ss_dssp SEEEECC-CCCSHHHHHHHHHHHHHHSCC-CC------SEEEEC-CCSSCC--CCCCSCC-CHHHHTTT
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHhccCC------CCEEEEEECccCCccccCCHHHHHHHHHHcC
Confidence 99999999999999999999999998776554 6899999999999889999888888887654
No 47
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=99.88 E-value=4.5e-23 Score=154.61 Aligned_cols=130 Identities=13% Similarity=0.101 Sum_probs=105.5
Q ss_pred cCceeeEEE-EeCCCCc---eeEeeeccCCCcc-----------cCcceeeeeEEEE-EecCCCee----eeCCCchhch
Q psy15036 39 EFSFNFGTQ-LGRRGIP---LLKHLKYLGTGTH-----------GKTVGIVFPAISV-TYSIGPRY----FRFPLVSRFL 98 (179)
Q Consensus 39 ~~~~~~Kiv-lG~~gvG---~~~~~~~~~~~~~-----------~~Ti~~~~~~k~v-~~~~~~~i----wDt~G~e~~~ 98 (179)
..+..+||+ +|++||| +++++.+.+...+ .||++.++..+.+ .++ +..+ |||+|+++|.
T Consensus 10 ~~~~~~ki~vvG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~-~~~~~~~i~Dt~G~~~~~ 88 (198)
T 3t1o_A 10 NREINFKIVYYGPGLSGKTTNLKWIYSKVPEGRKGEMVSLATEDERTLFFDFLPLDIGEVK-GFKTRFHLYTVPGQVFYN 88 (198)
T ss_dssp TTEEEEEEEEECSTTSSHHHHHHHHHHTSCGGGBCCCEEEECSSCEEEEEEECCSSCCCSS-SCEEEEEEEECCSCCSCS
T ss_pred ccccccEEEEECCCCCCHHHHHHHHHhhccccccccccccccccccceeeeeccccccccc-CCceEEEEEeCCChHHHH
Confidence 445789998 9999999 6666666666663 4588877765555 555 5554 9999999999
Q ss_pred hhhhhhhcCCcEEEEEEeCC------ChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCCCCCCCHHHHHHH
Q psy15036 99 SLTTGLYRGTMGFLLIFDVT------NENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQRCREVVTPDQIMF 172 (179)
Q Consensus 99 ~~~~~~~~~~~~vilvyDit------~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~~r~Vs~~e~~~~ 172 (179)
.+++.+++++|++|+|||++ ++++|+++..|+.+++..... .|++|||||+|+.+ .++.++++++
T Consensus 89 ~~~~~~~~~~d~~i~v~D~~~~~~~~~~~s~~~l~~~l~~~~~~~~~-------~piilv~NK~Dl~~--~~~~~~~~~~ 159 (198)
T 3t1o_A 89 ASRKLILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEYGLTLDD-------VPIVIQVNKRDLPD--ALPVEMVRAV 159 (198)
T ss_dssp HHHHHHTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTCCTTS-------SCEEEEEECTTSTT--CCCHHHHHHH
T ss_pred HHHHHHHhcCCEEEEEEECCcchhhHhHHHHHHHHHHHHhhccccCC-------CCEEEEEEchhccc--ccCHHHHHHH
Confidence 99999999999999999999 778999999999888433222 68999999999976 5999999999
Q ss_pred HhhhCC
Q psy15036 173 GSTQSS 178 (179)
Q Consensus 173 a~~~~~ 178 (179)
+++.+.
T Consensus 160 ~~~~~~ 165 (198)
T 3t1o_A 160 VDPEGK 165 (198)
T ss_dssp HCTTCC
T ss_pred HHhcCC
Confidence 987653
No 48
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=99.88 E-value=3.6e-22 Score=148.01 Aligned_cols=124 Identities=14% Similarity=0.063 Sum_probs=99.8
Q ss_pred eeeEEE-EeCCCCc---eeEeee-ccCCCcccCcceeeeeEEEEEecCCCee----eeCCCchhchhhhhhhhcCCcEEE
Q psy15036 42 FNFGTQ-LGRRGIP---LLKHLK-YLGTGTHGKTVGIVFPAISVTYSIGPRY----FRFPLVSRFLSLTTGLYRGTMGFL 112 (179)
Q Consensus 42 ~~~Kiv-lG~~gvG---~~~~~~-~~~~~~~~~Ti~~~~~~k~v~~~~~~~i----wDt~G~e~~~~~~~~~~~~~~~vi 112 (179)
..+||+ +|++||| ++.++. ..+.. +.||++..+ .+.+.++ +..+ |||+|+++ ..|++++|++|
T Consensus 6 ~~~ki~~vG~~~vGKTsli~~l~~~~~~~-~~~t~~~~~-~~~~~~~-~~~~~l~i~Dt~G~~~-----~~~~~~~d~~i 77 (178)
T 2iwr_A 6 PELRLGVLGDARSGKSSLIHRFLTGSYQV-LEKTESEQY-KKEMLVD-GQTHLVLIREEAGAPD-----AKFSGWADAVI 77 (178)
T ss_dssp CEEEEEEECCGGGCHHHHHHHHHHSCCCC-CSSCSSSEE-EEEEEET-TEEEEEEEEECSSSCC-----HHHHHHCSEEE
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCCC-cCCCcceeE-EEEEEEC-CEEEEEEEEECCCCch-----hHHHHhCCEEE
Confidence 468997 9999999 666665 44544 889998554 5777887 7655 99999987 46899999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCc--CCCCCCCHHHHHHHHhhh
Q psy15036 113 LIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELL--QRCREVVTPDQIMFGSTQ 176 (179)
Q Consensus 113 lvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl--~~~r~Vs~~e~~~~a~~~ 176 (179)
+|||+++++||+++..|++.+........ +.+|++|||||+|+ ..+|.++.+++++++++.
T Consensus 78 lv~D~~~~~s~~~~~~~~~~i~~~~~~~~---~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~~ 140 (178)
T 2iwr_A 78 FVFSLEDENSFQAVSRLHGQLSSLRGEGR---GGLALALVGTQDRISASSPRVVGDARARALXADM 140 (178)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHHCSSS---CCCEEEEEEECTTCBTTBCCCSCHHHHHHHHHHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHHHhcCC---CCCCEEEEEECccccccccCcCCHHHHHHHHHhh
Confidence 99999999999999998887776543210 11689999999999 467899999999999875
No 49
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=99.88 E-value=1.6e-22 Score=153.20 Aligned_cols=130 Identities=20% Similarity=0.246 Sum_probs=101.0
Q ss_pred ceeeEEE-EeCCCCc---eeEeee-ccCCCcccCcceeeeeEEEEEecCCCee----eeCCCchhchhhhhhhhcCCcEE
Q psy15036 41 SFNFGTQ-LGRRGIP---LLKHLK-YLGTGTHGKTVGIVFPAISVTYSIGPRY----FRFPLVSRFLSLTTGLYRGTMGF 111 (179)
Q Consensus 41 ~~~~Kiv-lG~~gvG---~~~~~~-~~~~~~~~~Ti~~~~~~k~v~~~~~~~i----wDt~G~e~~~~~~~~~~~~~~~v 111 (179)
...+||+ +|+.||| ++..+. ..+...+.+|++.++..+.+.++ +..+ ||++|+++|..+...+++++|++
T Consensus 26 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~-~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~i 104 (199)
T 2p5s_A 26 QKAYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVD-GERTVLQLWDTAGQERFRSIAKSYFRKADGV 104 (199)
T ss_dssp --CEEEEEESSTTSSHHHHHHHHHHCCCC----------CEEEEEEET-TEEEEEEEEECTTCTTCHHHHHHHHHHCSEE
T ss_pred CCCeEEEEECcCCCCHHHHHHHHHhCCCCccCCCCccceeEEEEEEEC-CEEEEEEEEECCCCcchhhhHHHHHhhCCEE
Confidence 3579997 9999999 666655 44667788999988887888888 7654 99999999999999999999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcC------CCCCCCHHHHHHHHhhhC
Q psy15036 112 LLIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQ------RCREVVTPDQIMFGSTQS 177 (179)
Q Consensus 112 ilvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~------~~r~Vs~~e~~~~a~~~~ 177 (179)
|+|||+++++||+.+..|+..+......+ .|++|||||+|+. ..|.++.+++++++++..
T Consensus 105 ilv~d~~~~~s~~~~~~~~~~i~~~~~~~------~piilv~NK~Dl~~~~~~~~~~~v~~~~~~~~~~~~~ 170 (199)
T 2p5s_A 105 LLLYDVTCEKSFLNIREWVDMIEDAAHET------VPIMLVGNKADIRDTAATEGQKCVPGHFGEKLAMTYG 170 (199)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHC---------CCEEEEEECGGGHHHHHHTTCCCCCHHHHHHHHHHHT
T ss_pred EEEEECCChHHHHHHHHHHHHHHHhcCCC------CCEEEEEECcccccccccccccccCHHHHHHHHHHcC
Confidence 99999999999999999999998776544 6899999999996 568999999999998754
No 50
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=99.88 E-value=3.3e-22 Score=146.25 Aligned_cols=127 Identities=16% Similarity=0.193 Sum_probs=85.2
Q ss_pred eeEEE-EeCCCCc---eeEeeeccCCCcccCcceeeeeEEEEEecCCCee----eeCCCchhchhhhhhhhcCCcEEEEE
Q psy15036 43 NFGTQ-LGRRGIP---LLKHLKYLGTGTHGKTVGIVFPAISVTYSIGPRY----FRFPLVSRFLSLTTGLYRGTMGFLLI 114 (179)
Q Consensus 43 ~~Kiv-lG~~gvG---~~~~~~~~~~~~~~~Ti~~~~~~k~v~~~~~~~i----wDt~G~e~~~~~~~~~~~~~~~vilv 114 (179)
.+||+ +|++||| +++.+.+.......++.+..+ .+.+.++ +..+ ||++|++++..+...+++.++++++|
T Consensus 2 ~~ki~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~~-~~~~~~~-~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v 79 (166)
T 3q72_A 2 VYKVLLLGAPGVGKSALARIFGGVEDGPEAEAAGHTY-DRSIVVD-GEEASLMVYDIWEQDGGRWLPGHCMAMGDAYVIV 79 (166)
T ss_dssp CCEEEEEESTTSSHHHHHHHHCCC----------CEE-EEEEEET-TEEEEEEEEECC---------------CCEEEEE
T ss_pred eEEEEEECCCCCCHHHHHHHHcCccccCCCCccccce-EEEEEEC-CEEEEEEEEECCCCccchhhhhhhhhhCCEEEEE
Confidence 58997 9999999 666666554445567777655 4666777 6665 99999999999999999999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHHHhC-CccCccccceEEEEeeCCCcCCCCCCCHHHHHHHHhhhC
Q psy15036 115 FDVTNENSFKDVEKWLLQIKVMDG-ALFTHFELQIVFMRGCLELLQRCREVVTPDQIMFGSTQS 177 (179)
Q Consensus 115 yDit~~~Sf~~l~~w~~~i~~~~~-~~~~~~~~~~iilvGnK~Dl~~~r~Vs~~e~~~~a~~~~ 177 (179)
||+++++||+.+..|+..+.+... .+ .|+++||||+|+.+.+.++.+++++++....
T Consensus 80 ~d~~~~~s~~~~~~~~~~~~~~~~~~~------~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~ 137 (166)
T 3q72_A 80 YSVTDKGSFEKASELRVQLRRARQTDD------VPIILVGNKSDLVRSREVSVDEGRACAVVFD 137 (166)
T ss_dssp EETTCHHHHHHHHHHHHHHHHCC---C------CCEEEEEECTTCCSSCCSCHHHHHHHHHHTT
T ss_pred EECCCHHHHHHHHHHHHHHHHhcCCCC------CCEEEEEeccccccccccCHHHHHHHHHHhC
Confidence 999999999999999999987542 22 6889999999999999999999999998754
No 51
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=99.88 E-value=3e-22 Score=146.88 Aligned_cols=129 Identities=20% Similarity=0.183 Sum_probs=94.5
Q ss_pred eeEEE-EeCCCCc---eeEeee-ccCCCcccCcceeeeeEEEEEecCCCee----eeCCCchhchh-hhhhhhcCCcEEE
Q psy15036 43 NFGTQ-LGRRGIP---LLKHLK-YLGTGTHGKTVGIVFPAISVTYSIGPRY----FRFPLVSRFLS-LTTGLYRGTMGFL 112 (179)
Q Consensus 43 ~~Kiv-lG~~gvG---~~~~~~-~~~~~~~~~Ti~~~~~~k~v~~~~~~~i----wDt~G~e~~~~-~~~~~~~~~~~vi 112 (179)
.+||+ +|++||| ++..+. ..+...+.++.+.++..+.+.++ +..+ ||++|++++.. ++..+++++|+++
T Consensus 2 ~~ki~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i 80 (169)
T 3q85_A 2 VFKVMLVGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIMVD-KEEVTLIVYDIWEQGDAGGWLQDHCLQTGDAFL 80 (169)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHCC------------CEEEEEEEET-TEEEEEEEECCCCC--------CHHHHHCSEEE
T ss_pred cEEEEEECCCCCCHHHHHHHHHhccCcccccCCCcCCeeeEEEEEC-CeEEEEEEEECCCccccchhhhhhhhccCCEEE
Confidence 58997 9999999 555554 33444455556667777888888 7665 99999999976 7888899999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCCCCCCCHHHHHHHHhhhC
Q psy15036 113 LIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQRCREVVTPDQIMFGSTQS 177 (179)
Q Consensus 113 lvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~~r~Vs~~e~~~~a~~~~ 177 (179)
+|||+++++||+.+..|+.++.+..... ..|+++||||+|+.++++++.+++.+++++..
T Consensus 81 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~-----~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~ 140 (169)
T 3q85_A 81 IVFSVTDRRSFSKVPETLLRLRAGRPHH-----DLPVILVGNKSDLARSREVSLEEGRHLAGTLS 140 (169)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHSTTS-----CCCEEEEEECTTCGGGCCSCHHHHHHHHHHTT
T ss_pred EEEECCChHHHHHHHHHHHHHHhcccCC-----CCCEEEEeeCcchhhcccCCHHHHHHHHHHcC
Confidence 9999999999999999999998876531 16889999999999889999999999998764
No 52
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.88 E-value=8.1e-22 Score=150.00 Aligned_cols=131 Identities=22% Similarity=0.390 Sum_probs=110.7
Q ss_pred cCceeeEEE-EeCCCCc---eeEeee-ccCCCcccCcceeeeeEEEEEecCCCee----eeCCCchhchhhhhhhhcCCc
Q psy15036 39 EFSFNFGTQ-LGRRGIP---LLKHLK-YLGTGTHGKTVGIVFPAISVTYSIGPRY----FRFPLVSRFLSLTTGLYRGTM 109 (179)
Q Consensus 39 ~~~~~~Kiv-lG~~gvG---~~~~~~-~~~~~~~~~Ti~~~~~~k~v~~~~~~~i----wDt~G~e~~~~~~~~~~~~~~ 109 (179)
..+..+||+ +|+.+|| ++..+. ..+...+.+|++.++..+.+.++ +..+ |||+|+++|..+...+++++|
T Consensus 16 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d 94 (213)
T 3cph_A 16 SYDSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDIN-GKKVKLQLWDTAGQERFRTITTAYYRGAM 94 (213)
T ss_dssp ----CEEEEEECSTTSSHHHHHHHHHHCCCCCSSSCCCSCCEEEEEEEET-TEEEEEEEECCTTGGGGTCCCHHHHTTCS
T ss_pred CCCcceEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceEEEEEEEEC-CEEEEEEEEeCCCcHHHHHHHHHHhccCC
Confidence 445679997 9999999 665555 45667788999988888888888 7543 999999999999999999999
Q ss_pred EEEEEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCCCCCCCHHHHHHHHhhhC
Q psy15036 110 GFLLIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQRCREVVTPDQIMFGSTQS 177 (179)
Q Consensus 110 ~vilvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~~r~Vs~~e~~~~a~~~~ 177 (179)
++|+|||++++++|+.+..|+..+.+..... .|+++|+||+|+ ..+.++.+++.+++++.+
T Consensus 95 ~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~------~piilv~nK~Dl-~~~~~~~~~~~~~~~~~~ 155 (213)
T 3cph_A 95 GIILVYDVTDERTFTNIKQWFKTVNEHANDE------AQLLLVGNKSDM-ETRVVTADQGEALAKELG 155 (213)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHTTTC------SEEEEEEECTTC-SSCCSCHHHHHHHHHHHT
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhcCCC------CCEEEEEECCCC-cccccCHHHHHHHHHHcC
Confidence 9999999999999999999999998876554 689999999999 568899999999988764
No 53
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=99.87 E-value=6.3e-22 Score=148.67 Aligned_cols=122 Identities=11% Similarity=0.122 Sum_probs=102.5
Q ss_pred eeeEEE-EeCCCCc---eeEeee-ccCCCcccCcceeeeeEEEEEecCCCee----eeCCCchhchhhhhhhhcCCcEEE
Q psy15036 42 FNFGTQ-LGRRGIP---LLKHLK-YLGTGTHGKTVGIVFPAISVTYSIGPRY----FRFPLVSRFLSLTTGLYRGTMGFL 112 (179)
Q Consensus 42 ~~~Kiv-lG~~gvG---~~~~~~-~~~~~~~~~Ti~~~~~~k~v~~~~~~~i----wDt~G~e~~~~~~~~~~~~~~~vi 112 (179)
..+||+ +|++||| ++.++. ..+...+.||.+ .+ .+.+.++ +..+ |||+|+++|. |++++++++
T Consensus 19 ~~~ki~ivG~~~vGKSsL~~~~~~~~~~~~~~~t~~-~~-~~~~~~~-~~~~~l~i~Dt~G~~~~~-----~~~~~~~~i 90 (184)
T 3ihw_A 19 PELKVGIVGNLSSGKSALVHRYLTGTYVQEESPEGG-RF-KKEIVVD-GQSYLLLIRDEGGPPELQ-----FAAWVDAVV 90 (184)
T ss_dssp CEEEEEEECCTTSCHHHHHHHHHHSSCCCCCCTTCE-EE-EEEEEET-TEEEEEEEEECSSSCCHH-----HHHHCSEEE
T ss_pred CeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCCcc-eE-EEEEEEC-CEEEEEEEEECCCChhhh-----eecCCCEEE
Confidence 479998 9999999 665554 667777888844 44 4778888 7766 9999999886 889999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHHHhC-CccCccccceEEEEeeCCCc--CCCCCCCHHHHHHHHhhhC
Q psy15036 113 LIFDVTNENSFKDVEKWLLQIKVMDG-ALFTHFELQIVFMRGCLELL--QRCREVVTPDQIMFGSTQS 177 (179)
Q Consensus 113 lvyDit~~~Sf~~l~~w~~~i~~~~~-~~~~~~~~~~iilvGnK~Dl--~~~r~Vs~~e~~~~a~~~~ 177 (179)
+|||+++++||+++..|+.++.+... .+ .|++|||||+|+ ..+|.++.+++++++++..
T Consensus 91 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~------~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~~~ 152 (184)
T 3ihw_A 91 FVFSLEDEISFQTVYNYFLRLCSFRNASE------VPMVLVGTQDAISAANPRVIDDSRARKLSTDLK 152 (184)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHTTSCGGG------SCEEEEEECTTCBTTBCCCSCHHHHHHHHHHTT
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhcCCCC------CCEEEEEECcccccccccccCHHHHHHHHHHcC
Confidence 99999999999999999999987653 22 688999999999 5678999999999998764
No 54
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=99.87 E-value=7.7e-22 Score=147.87 Aligned_cols=132 Identities=22% Similarity=0.369 Sum_probs=111.2
Q ss_pred cCceeeEEE-EeCCCCc---eeEeee-ccCCCcccCcceeeeeEEEEEecCCCee----eeCCCchhchhhhhhhhcCCc
Q psy15036 39 EFSFNFGTQ-LGRRGIP---LLKHLK-YLGTGTHGKTVGIVFPAISVTYSIGPRY----FRFPLVSRFLSLTTGLYRGTM 109 (179)
Q Consensus 39 ~~~~~~Kiv-lG~~gvG---~~~~~~-~~~~~~~~~Ti~~~~~~k~v~~~~~~~i----wDt~G~e~~~~~~~~~~~~~~ 109 (179)
+....+||+ +|+.+|| ++.++. ..+...+.+|++.++..+.+.++ +..+ |||+|++++..+...+++++|
T Consensus 11 ~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~-~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d 89 (195)
T 1x3s_A 11 DVLTTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVD-GNKAKLAIWDTAGQERFRTLTPSYYRGAQ 89 (195)
T ss_dssp TEEEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEET-TEEEEEEEEEECSSGGGCCSHHHHHTTCC
T ss_pred CCCCceEEEEECCCCCCHHHHHHHHHcCCCCccCCCccceEEEEEEEEEC-CeEEEEEEEeCCCchhhhhhhHHHhccCC
Confidence 334579997 9999999 666665 55677889999998888888887 6654 999999999999999999999
Q ss_pred EEEEEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCCCCCCCHHHHHHHHhhhC
Q psy15036 110 GFLLIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQRCREVVTPDQIMFGSTQS 177 (179)
Q Consensus 110 ~vilvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~~r~Vs~~e~~~~a~~~~ 177 (179)
++|+|||++++++|+.+..|+.++.+..... ..|+++|+||+|+. +++++.+++.+++++..
T Consensus 90 ~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~-----~~p~ilv~nK~Dl~-~~~~~~~~~~~~~~~~~ 151 (195)
T 1x3s_A 90 GVILVYDVTRRDTFVKLDNWLNELETYCTRN-----DIVNMLVGNKIDKE-NREVDRNEGLKFARKHS 151 (195)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHTTCCSCS-----CCEEEEEEECTTSS-SCCSCHHHHHHHHHHTT
T ss_pred EEEEEEECcCHHHHHHHHHHHHHHHHhcCcC-----CCcEEEEEECCcCc-ccccCHHHHHHHHHHcC
Confidence 9999999999999999999999988764321 16889999999994 47899999999998754
No 55
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=99.87 E-value=4.9e-22 Score=150.32 Aligned_cols=128 Identities=13% Similarity=0.123 Sum_probs=100.7
Q ss_pred eeeEEE-EeCCCCc---eeEeeec---cCCCcccCcceeeeeEEEEEecCCCee----eeCCCchh-chhhhhhhhcCCc
Q psy15036 42 FNFGTQ-LGRRGIP---LLKHLKY---LGTGTHGKTVGIVFPAISVTYSIGPRY----FRFPLVSR-FLSLTTGLYRGTM 109 (179)
Q Consensus 42 ~~~Kiv-lG~~gvG---~~~~~~~---~~~~~~~~Ti~~~~~~k~v~~~~~~~i----wDt~G~e~-~~~~~~~~~~~~~ 109 (179)
..+||+ +|++||| ++.++.+ .+.+. .++++.++..+.+.++ +..+ |||+|++. ++.+.+.|++.++
T Consensus 5 ~~~kv~lvG~~~vGKSsL~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-~~~~~l~~~Dt~~~~~~~~~~~~~~~~~~~ 82 (192)
T 2cjw_A 5 TYYRVVLIGEQGVGKSTLANIFAGVHDSMDSD-XEVLGEDTYERTLMVD-GESATIILLDMWENKGENEWLHDHCMQVGD 82 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHHSCCC-----GGGCTTEEEEEEEET-TEEEEEEEECCCCC----CTTGGGHHHHCS
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCcCCcCcc-ccccceeEEEEEEEEC-CeEEEEEEEEeccCcchhhhHHHhhcccCC
Confidence 468997 9999999 6666652 22333 3457778777888888 7764 99999877 5668889999999
Q ss_pred EEEEEEeCCChhhHHHHHHHHHHHHHHhC-CccCccccceEEEEeeCCCcCCCCCCCHHHHHHHHhhhC
Q psy15036 110 GFLLIFDVTNENSFKDVEKWLLQIKVMDG-ALFTHFELQIVFMRGCLELLQRCREVVTPDQIMFGSTQS 177 (179)
Q Consensus 110 ~vilvyDit~~~Sf~~l~~w~~~i~~~~~-~~~~~~~~~~iilvGnK~Dl~~~r~Vs~~e~~~~a~~~~ 177 (179)
++++|||+++++||+++..|+..+.+... .+ .|++|||||+||.+.|.++.+++..+|....
T Consensus 83 ~~i~v~dv~~~~s~~~~~~~~~~l~~~~~~~~------~piilV~NK~Dl~~~r~v~~~~~~~~a~~~~ 145 (192)
T 2cjw_A 83 AYLIVYSITDRASFEKASELRIQLRRARQTED------IPIILVGNKSDLVRXREVSVSEGRAXAVVFD 145 (192)
T ss_dssp EEEEEEETTCHHHHHHHHHHHHHHHHHTTTSC------CCEEEEEECTTCGGGCCSCHHHHHHHHHHTT
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhhCCCC------CeEEEEEechhhhccccccHHHHHHHHHHhC
Confidence 99999999999999999999998887642 23 6899999999998889999999999887654
No 56
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=99.87 E-value=6.2e-22 Score=149.72 Aligned_cols=130 Identities=18% Similarity=0.152 Sum_probs=101.3
Q ss_pred cCceeeEEE-EeCCCCc---eeEeee-ccCCCcccCcceeeeeEEEEEecCCCee----eeCCCchhchhhhhhhhcCCc
Q psy15036 39 EFSFNFGTQ-LGRRGIP---LLKHLK-YLGTGTHGKTVGIVFPAISVTYSIGPRY----FRFPLVSRFLSLTTGLYRGTM 109 (179)
Q Consensus 39 ~~~~~~Kiv-lG~~gvG---~~~~~~-~~~~~~~~~Ti~~~~~~k~v~~~~~~~i----wDt~G~e~~~~~~~~~~~~~~ 109 (179)
.....+||+ +|+.||| ++..+. ..+...+.+|++..+ .+.+.++ +..+ ||++|+++|..++..+++++|
T Consensus 16 ~~~~~~ki~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~-~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ 93 (201)
T 2q3h_A 16 AEGRGVKCVLVGDGAVGKTSLVVSYTTNGYPTEYIPTAFDNF-SAVVSVD-GRPVRLQLCDTAGQDEFDKLRPLCYTNTD 93 (201)
T ss_dssp ----CEEEEEECSTTSSHHHHHHHHHC--------CCSSEEE-EEEEEET-TEEEEEEEEECCCSTTCSSSGGGGGTTCS
T ss_pred CCCcceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccccee-EEEEEEC-CEEEEEEEEECCCCHHHHHHhHhhcCCCc
Confidence 445689998 9999999 555554 456778889998665 4667777 7654 999999999999999999999
Q ss_pred EEEEEEeCCChhhHHHHH-HHHHHHHHHhCCccCccccceEEEEeeCCCcCC------------CCCCCHHHHHHHHhhh
Q psy15036 110 GFLLIFDVTNENSFKDVE-KWLLQIKVMDGALFTHFELQIVFMRGCLELLQR------------CREVVTPDQIMFGSTQ 176 (179)
Q Consensus 110 ~vilvyDit~~~Sf~~l~-~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~------------~r~Vs~~e~~~~a~~~ 176 (179)
++|+|||+++++||+++. .|+..+....+. .|++|||||+|+.+ ++.++.+++..+++..
T Consensus 94 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~-------~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 166 (201)
T 2q3h_A 94 IFLLCFSVVSPSSFQNVSEKWVPEIRCHCPK-------APIILVGTQSDLREDVKVLIELDKCKEKPVPEEAAKLLAEEI 166 (201)
T ss_dssp EEEEEEETTCHHHHHHHHHTHHHHHHHHCSS-------SCEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHH
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHHhCCC-------CCEEEEEECHhhhhchhhhhhhcccccccCCHHHHHHHHHhc
Confidence 999999999999999996 899999887653 68899999999975 4789999999999876
Q ss_pred C
Q psy15036 177 S 177 (179)
Q Consensus 177 ~ 177 (179)
.
T Consensus 167 ~ 167 (201)
T 2q3h_A 167 K 167 (201)
T ss_dssp T
T ss_pred C
Confidence 4
No 57
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=99.87 E-value=9.1e-22 Score=143.68 Aligned_cols=127 Identities=15% Similarity=0.155 Sum_probs=108.1
Q ss_pred eeEEE-EeCCCCc---eeEeee-ccCCCcccCcceeeeeEEEEEecCCCee----eeCCCchhchhhhhhhhcCCcEEEE
Q psy15036 43 NFGTQ-LGRRGIP---LLKHLK-YLGTGTHGKTVGIVFPAISVTYSIGPRY----FRFPLVSRFLSLTTGLYRGTMGFLL 113 (179)
Q Consensus 43 ~~Kiv-lG~~gvG---~~~~~~-~~~~~~~~~Ti~~~~~~k~v~~~~~~~i----wDt~G~e~~~~~~~~~~~~~~~vil 113 (179)
.+||+ +|+.||| +++.+. ..+...+.+|++..+. +.+.++ +..+ ||++|++++..+...++++++++++
T Consensus 3 ~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~-~~~~~~-~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~ 80 (167)
T 1c1y_A 3 EYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYR-KQVEVD-CQQCMLEILDTAGTEQFTAMRDLYMKNGQGFAL 80 (167)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHCCCCCSCCCCSEEEEE-EEEESS-SCEEEEEEEEECSSCSSTTHHHHHHHHCSEEEE
T ss_pred eeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccceEE-EEEEEC-CEEEEEEEEECCChHHHHHHHHHHhccCCEEEE
Confidence 58997 9999999 655555 5567788899987664 667777 6654 9999999999999999999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCCCCCCCHHHHHHHHhhh
Q psy15036 114 IFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQRCREVVTPDQIMFGSTQ 176 (179)
Q Consensus 114 vyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~~r~Vs~~e~~~~a~~~ 176 (179)
|||+++++||+.+..|+..+.+..... ..|+++|+||+|+.+++.++.+++.+++++.
T Consensus 81 v~d~~~~~s~~~~~~~~~~i~~~~~~~-----~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~ 138 (167)
T 1c1y_A 81 VYSITAQSTFNDLQDLREQILRVKDTE-----DVPMILVGNKCDLEDERVVGKEQGQNLARQW 138 (167)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHHCCS-----CCCEEEEEECTTCGGGCCSCHHHHHHHHHHT
T ss_pred EEECCCHHHHHHHHHHHHHHHHhhCcC-----CCcEEEEEECccccccccCCHHHHHHHHHHc
Confidence 999999999999999999998765321 1688999999999988999999999999875
No 58
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=99.87 E-value=4.2e-22 Score=147.41 Aligned_cols=133 Identities=22% Similarity=0.242 Sum_probs=95.6
Q ss_pred CceeeEEE-EeCCCCc---eeEeee-ccCCCcccCcceeeeeEEEEEecCCC---ee--eeCCCchhchhhhhhhhcCCc
Q psy15036 40 FSFNFGTQ-LGRRGIP---LLKHLK-YLGTGTHGKTVGIVFPAISVTYSIGP---RY--FRFPLVSRFLSLTTGLYRGTM 109 (179)
Q Consensus 40 ~~~~~Kiv-lG~~gvG---~~~~~~-~~~~~~~~~Ti~~~~~~k~v~~~~~~---~i--wDt~G~e~~~~~~~~~~~~~~ 109 (179)
....+||+ +|+.|+| ++..+. ..+...+.+|++.++..+.+.++ +. .+ ||++|++++..+...+++++|
T Consensus 5 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d 83 (182)
T 1ky3_A 5 KKNILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVD-GDKVATMQVWDTAGQERFQSLGVAFYRGAD 83 (182)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHHSCCCTTC---CCCSCEEEEECCS-SSCCEEEEEECCC----------CCSTTCC
T ss_pred cCceEEEEEECCCCCCHHHHHHHHHhCcCCcccCCccceEEEEEEEEEc-CCcEEEEEEEECCCChHhhhhhHHHhhcCC
Confidence 34579997 9999999 665555 55677888999988887777776 33 22 999999999999999999999
Q ss_pred EEEEEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCc-CCCCCCCHHHHHHHHhh
Q psy15036 110 GFLLIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELL-QRCREVVTPDQIMFGST 175 (179)
Q Consensus 110 ~vilvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl-~~~r~Vs~~e~~~~a~~ 175 (179)
++|+|||+++++||+.+..|+.++....... .....|+++||||+|+ ..++.++.+++.++++.
T Consensus 84 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~--~~~~~p~ilv~nK~Dl~~~~~~v~~~~~~~~~~~ 148 (182)
T 1ky3_A 84 CCVLVYDVTNASSFENIKSWRDEFLVHANVN--SPETFPFVILGNKIDAEESKKIVSEKSAQELAKS 148 (182)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHHCCS--CTTTCCEEEEEECTTSCGGGCCSCHHHHHHHHHH
T ss_pred EEEEEEECCChHHHHHHHHHHHHHHHHhccc--CcCCCcEEEEEECCccccccccCCHHHHHHHHHh
Confidence 9999999999999999999999998776410 0011688999999999 45678999999999874
No 59
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=99.87 E-value=1.4e-21 Score=148.06 Aligned_cols=132 Identities=23% Similarity=0.255 Sum_probs=109.7
Q ss_pred CceeeEEE-EeCCCCc---eeEeee-ccCCCcccCcceeeeeEEEEEecCCCee----eeCCCchhchhhhhhhhcCCcE
Q psy15036 40 FSFNFGTQ-LGRRGIP---LLKHLK-YLGTGTHGKTVGIVFPAISVTYSIGPRY----FRFPLVSRFLSLTTGLYRGTMG 110 (179)
Q Consensus 40 ~~~~~Kiv-lG~~gvG---~~~~~~-~~~~~~~~~Ti~~~~~~k~v~~~~~~~i----wDt~G~e~~~~~~~~~~~~~~~ 110 (179)
.+..+||+ +|+.||| ++..+. ..+...+.+|++.++..+.+.++ +..+ ||++|++++..+...+++++|+
T Consensus 5 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~-~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 83 (207)
T 1vg8_A 5 KKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVD-DRLVTMQIWDTAGQERFQSLGVAFYRGADC 83 (207)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEESS-SCEEEEEEEEECSSGGGSCSCCGGGTTCSE
T ss_pred cCcceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEEC-CEEEEEEEEeCCCcHHHHHhHHHHHhCCcE
Confidence 45689997 9999999 666655 45677888999999888888888 7654 9999999999999999999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCCCCCCCHHHHHHHHhh
Q psy15036 111 FLLIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQRCREVVTPDQIMFGST 175 (179)
Q Consensus 111 vilvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~~r~Vs~~e~~~~a~~ 175 (179)
+|+|||+++++||+.+..|+..+....... .....|+++|+||+|+. .+.+..+++.++++.
T Consensus 84 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~--~~~~~piilv~nK~Dl~-~~~~~~~~~~~~~~~ 145 (207)
T 1vg8_A 84 CVLVFDVTAPNTFKTLDSWRDEFLIQASPR--DPENFPFVVLGNKIDLE-NRQVATKRAQAWCYS 145 (207)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHHCCS--SGGGSCEEEEEECTTSS-CCCSCHHHHHHHHHH
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhcccc--cCCCCcEEEEEECCCCc-ccccCHHHHHHHHHh
Confidence 999999999999999999999998766421 00116889999999998 578999999999873
No 60
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=99.87 E-value=2.8e-22 Score=152.98 Aligned_cols=127 Identities=16% Similarity=0.162 Sum_probs=105.8
Q ss_pred eeeEEE-EeCCCCc---eeEeee-ccCCCcccCcceeeeeEEEEEecCCCee----eeCCCchhchhhhhhhhcCCcEEE
Q psy15036 42 FNFGTQ-LGRRGIP---LLKHLK-YLGTGTHGKTVGIVFPAISVTYSIGPRY----FRFPLVSRFLSLTTGLYRGTMGFL 112 (179)
Q Consensus 42 ~~~Kiv-lG~~gvG---~~~~~~-~~~~~~~~~Ti~~~~~~k~v~~~~~~~i----wDt~G~e~~~~~~~~~~~~~~~vi 112 (179)
..+||+ +|+.||| ++.++. ..+...+.||++..+ .+.+.++ +..+ |||+|+++|..++..+++++|++|
T Consensus 8 ~~~ki~i~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~-~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 85 (212)
T 2j0v_A 8 KFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVAVD-GQIVNLGLWDTAGQEDYSRLRPLSYRGADIFV 85 (212)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCSSCCCE-EEEEECS-SCEEEEEEECCCCCCCCCC--CGGGTTCSEEE
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceeE-EEEEEEC-CEEEEEEEEECCCcHHHHHHHHhhccCCCEEE
Confidence 579997 9999999 555555 556778889998666 4667777 7654 999999999999999999999999
Q ss_pred EEEeCCChhhHHHHH-HHHHHHHHHhCCccCccccceEEEEeeCCCcCCCCC--------CCHHHHHHHHhhhC
Q psy15036 113 LIFDVTNENSFKDVE-KWLLQIKVMDGALFTHFELQIVFMRGCLELLQRCRE--------VVTPDQIMFGSTQS 177 (179)
Q Consensus 113 lvyDit~~~Sf~~l~-~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~~r~--------Vs~~e~~~~a~~~~ 177 (179)
+|||+++++||+++. .|+..+....+. .|++|||||+|+.+++. ++.+++.+++++.+
T Consensus 86 lv~d~~~~~s~~~~~~~~~~~~~~~~~~-------~piilv~nK~Dl~~~~~~~~~~~~~v~~~~~~~~~~~~~ 152 (212)
T 2j0v_A 86 LAFSLISKASYENVLKKWMPELRRFAPN-------VPIVLVGTKLDLRDDKGYLADHTNVITSTQGEELRKQIG 152 (212)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHCTT-------CCEEEEEECHHHHTCHHHHHTCSSCCCHHHHHHHHHHHT
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHhCCC-------CCEEEEEeCHHhhhCccccccccCCCCHHHHHHHHHHcC
Confidence 999999999999996 899999887653 68899999999976654 58999999998765
No 61
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=99.87 E-value=8e-22 Score=149.53 Aligned_cols=129 Identities=19% Similarity=0.163 Sum_probs=105.2
Q ss_pred eeeEEE-EeCCCCc---eeEeee-ccCCCcccCcceeeeeEEEEEecCCCee----eeCCCchhchhhhhhhhcCCcEEE
Q psy15036 42 FNFGTQ-LGRRGIP---LLKHLK-YLGTGTHGKTVGIVFPAISVTYSIGPRY----FRFPLVSRFLSLTTGLYRGTMGFL 112 (179)
Q Consensus 42 ~~~Kiv-lG~~gvG---~~~~~~-~~~~~~~~~Ti~~~~~~k~v~~~~~~~i----wDt~G~e~~~~~~~~~~~~~~~vi 112 (179)
..+||+ +|+.||| +++.+. ..+...+.+|.+..+ .+.+.++ +..+ |||+|+++|..+...+++++|++|
T Consensus 23 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~-~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 100 (201)
T 3oes_A 23 RYRKVVILGYRCVGKTSLAHQFVEGEFSEGYDPTVENTY-SKIVTLG-KDEFHLHLVDTAGQDEYSILPYSFIIGVHGYV 100 (201)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSCCCSCCCCCSEEEE-EEEEC-----CEEEEEEEECCCCTTCCCCGGGTTTCCEEE
T ss_pred CcEEEEEECCCCcCHHHHHHHHHhCCCCCCCCCccceEE-EEEEEEC-CEEEEEEEEECCCccchHHHHHHHHhcCCEEE
Confidence 479997 9999999 666655 556788889998777 4666665 5444 999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCCCCCCCHHHHHHHHhhhC
Q psy15036 113 LIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQRCREVVTPDQIMFGSTQS 177 (179)
Q Consensus 113 lvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~~r~Vs~~e~~~~a~~~~ 177 (179)
+|||+++++||+.+..|+..+.+..... ..|++|||||+|+.+++.++.+++.+++++..
T Consensus 101 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~-----~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~ 160 (201)
T 3oes_A 101 LVYSVTSLHSFQVIESLYQKLHEGHGKT-----RVPVVLVGNKADLSPEREVQAVEGKKLAESWG 160 (201)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHC----------CCCEEEEEECTTCGGGCCSCHHHHHHHHHHHT
T ss_pred EEEeCCCHHHHHHHHHHHHHHHHhcCCC-----CCCEEEEEECccCccccccCHHHHHHHHHHhC
Confidence 9999999999999999999998764321 16889999999999999999999999998764
No 62
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=99.87 E-value=1.8e-21 Score=141.81 Aligned_cols=128 Identities=16% Similarity=0.142 Sum_probs=105.2
Q ss_pred eeEEE-EeCCCCc---eeEeee-ccCCCcccCcceeeeeEEEEEecCCCee----eeCCCchhchhhhhhhhcCCcEEEE
Q psy15036 43 NFGTQ-LGRRGIP---LLKHLK-YLGTGTHGKTVGIVFPAISVTYSIGPRY----FRFPLVSRFLSLTTGLYRGTMGFLL 113 (179)
Q Consensus 43 ~~Kiv-lG~~gvG---~~~~~~-~~~~~~~~~Ti~~~~~~k~v~~~~~~~i----wDt~G~e~~~~~~~~~~~~~~~vil 113 (179)
.+||+ +|+.|+| +++.+. ..+...+.+|.+..+. ..+.++ +..+ ||++|++++..+...+++.++++++
T Consensus 4 ~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~-~~~~~~-~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~ 81 (168)
T 1u8z_A 4 LHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYR-KKVVLD-GEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLC 81 (168)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEEE-EEEEET-TEEEEEEEEECCC---CHHHHHHHHHHCSEEEE
T ss_pred eEEEEEECCCCCCHHHHHHHHHhCccCCCCCCCcceEEE-EEEEEC-CEEEEEEEEECCCcchhHHHHHHHhhcCCEEEE
Confidence 58997 9999999 555555 4466778888886663 556677 6543 9999999999999999999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCCCCCCCHHHHHHHHhhhC
Q psy15036 114 IFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQRCREVVTPDQIMFGSTQS 177 (179)
Q Consensus 114 vyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~~r~Vs~~e~~~~a~~~~ 177 (179)
|||+++++||+.+..|+..+.+..... ..|+++|+||+|+.+.++++.+++++++++..
T Consensus 82 v~d~~~~~s~~~~~~~~~~i~~~~~~~-----~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~ 140 (168)
T 1u8z_A 82 VFSITEMESFAATADFREQILRVKEDE-----NVPFLLVGNKSDLEDKRQVSVEEAKNRADQWN 140 (168)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHHCCT-----TSCEEEEEECGGGGGGCCSCHHHHHHHHHHHT
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCC-----CCcEEEEEECccccccCccCHHHHHHHHHHcC
Confidence 999999999999999999998876531 16889999999999889999999999998754
No 63
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=99.86 E-value=5.6e-21 Score=143.37 Aligned_cols=127 Identities=17% Similarity=0.298 Sum_probs=108.0
Q ss_pred ceeeEEE-EeCCCCc---eeEeee-ccCCCcccCcceeeeeEEEEEecCCCe----------------------------
Q psy15036 41 SFNFGTQ-LGRRGIP---LLKHLK-YLGTGTHGKTVGIVFPAISVTYSIGPR---------------------------- 87 (179)
Q Consensus 41 ~~~~Kiv-lG~~gvG---~~~~~~-~~~~~~~~~Ti~~~~~~k~v~~~~~~~---------------------------- 87 (179)
+..+||+ +|+.+|| ++..+. ..+...+.+|++.++..+.+.++ +..
T Consensus 5 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (208)
T 3clv_A 5 KSSYKTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLN-DINIKNNSNNEKNNNINSINDDNNVIITNQH 83 (208)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSCEEEEEEEETT-C------------------------------
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhCcCCCCcCccccceeEEEEEEec-Ccccccccccccccccccccccccccccccc
Confidence 4579997 9999999 665655 55677888999988888888877 633
Q ss_pred -----------e--eeCCCchhchhhhhhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEee
Q psy15036 88 -----------Y--FRFPLVSRFLSLTTGLYRGTMGFLLIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGC 154 (179)
Q Consensus 88 -----------i--wDt~G~e~~~~~~~~~~~~~~~vilvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGn 154 (179)
+ ||++|+++|..+...+++.+|++++|||+++++||+.+..|+..+.+... .|+++|+|
T Consensus 84 ~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~--------~piilv~N 155 (208)
T 3clv_A 84 NNYNENLCNIKFDIWDTAGQERYASIVPLYYRGATCAIVVFDISNSNTLDRAKTWVNQLKISSN--------YIIILVAN 155 (208)
T ss_dssp -CCCTTTCEEEEEEEECTTGGGCTTTHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSC--------CEEEEEEE
T ss_pred ccccCccceeEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhhCC--------CcEEEEEE
Confidence 3 99999999999999999999999999999999999999999999987643 48899999
Q ss_pred CCCcCCCCCCCHHHHHHHHhhhC
Q psy15036 155 LELLQRCREVVTPDQIMFGSTQS 177 (179)
Q Consensus 155 K~Dl~~~r~Vs~~e~~~~a~~~~ 177 (179)
|+| ..+++++.+++++++++..
T Consensus 156 K~D-~~~~~~~~~~~~~~~~~~~ 177 (208)
T 3clv_A 156 KID-KNKFQVDILEVQKYAQDNN 177 (208)
T ss_dssp CTT-CC-CCSCHHHHHHHHHHTT
T ss_pred CCC-cccccCCHHHHHHHHHHcC
Confidence 999 5668999999999998754
No 64
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=99.86 E-value=3.2e-21 Score=140.37 Aligned_cols=128 Identities=17% Similarity=0.195 Sum_probs=107.9
Q ss_pred eeEEE-EeCCCCc---eeEeee-ccCCCcccCcceeeeeEEEEEecCCCee----eeCCCchhchhhhhhhhcCCcEEEE
Q psy15036 43 NFGTQ-LGRRGIP---LLKHLK-YLGTGTHGKTVGIVFPAISVTYSIGPRY----FRFPLVSRFLSLTTGLYRGTMGFLL 113 (179)
Q Consensus 43 ~~Kiv-lG~~gvG---~~~~~~-~~~~~~~~~Ti~~~~~~k~v~~~~~~~i----wDt~G~e~~~~~~~~~~~~~~~vil 113 (179)
.+||+ +|+.||| ++..+. ..+...+.+|++..+ .+.+.++ +..+ ||++|++++..+...++++++++++
T Consensus 3 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~~~~l~D~~G~~~~~~~~~~~~~~~~~~i~ 80 (167)
T 1kao_A 3 EYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIEDFY-RKEIEVD-SSPSVLEILDTAGTEQFASMRDLYIKNGQGFIL 80 (167)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEET-TEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEE
T ss_pred EEEEEEECCCCCCHHHHHHHHHcCCCcccCCCCcceeE-EEEEEEC-CEEEEEEEEECCCchhhHHHHHHHhccCCEEEE
Confidence 58997 9999999 555554 556777888887544 5677777 7653 9999999999999999999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCCCCCCCHHHHHHHHhhhC
Q psy15036 114 IFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQRCREVVTPDQIMFGSTQS 177 (179)
Q Consensus 114 vyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~~r~Vs~~e~~~~a~~~~ 177 (179)
|||+++++||+++..|+.++.+..... ..|+++|+||+|+.++++++.+++++++++.+
T Consensus 81 v~d~~~~~s~~~~~~~~~~i~~~~~~~-----~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~ 139 (167)
T 1kao_A 81 VYSLVNQQSFQDIKPMRDQIIRVKRYE-----KVPVILVGNKVDLESEREVSSSEGRALAEEWG 139 (167)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHTTTS-----CCCEEEEEECGGGGGGCCSCHHHHHHHHHHHT
T ss_pred EEeCCCHHHHHHHHHHHHHHHHhcCCC-----CCCEEEEEECCcccccccCCHHHHHHHHHHhC
Confidence 999999999999999999998765421 16889999999998889999999999998764
No 65
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=99.86 E-value=3.5e-21 Score=146.10 Aligned_cols=127 Identities=16% Similarity=0.131 Sum_probs=107.3
Q ss_pred eeeEEE-EeCCCCc---eeEeee-ccCCCcccCcceeeeeEEEEEecCCCee----eeCCCchhchhhhhhhhcCCcEEE
Q psy15036 42 FNFGTQ-LGRRGIP---LLKHLK-YLGTGTHGKTVGIVFPAISVTYSIGPRY----FRFPLVSRFLSLTTGLYRGTMGFL 112 (179)
Q Consensus 42 ~~~Kiv-lG~~gvG---~~~~~~-~~~~~~~~~Ti~~~~~~k~v~~~~~~~i----wDt~G~e~~~~~~~~~~~~~~~vi 112 (179)
..+||+ +|+.+|| ++..+. ..+...+.||++.++. ..+.++ +..+ ||++|+++|..++..+++++|+++
T Consensus 24 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~-~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i 101 (201)
T 2gco_A 24 IRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYI-ADIEVD-GKQVELALWDTAGQEDYDRLRPLSYPDTDVIL 101 (201)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSSCCSSCCCSSCCCCE-EEEEET-TEEEEEEEECCCCSGGGTTTGGGGCTTCSEEE
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCcCCcccCCcccceEE-EEEEEC-CEEEEEEEEECCCchhHHHHHHHhcCCCCEEE
Confidence 478997 9999999 555555 5567778899987775 456777 6544 999999999999999999999999
Q ss_pred EEEeCCChhhHHHH-HHHHHHHHHHhCCccCccccceEEEEeeCCCcCCC------------CCCCHHHHHHHHhhhC
Q psy15036 113 LIFDVTNENSFKDV-EKWLLQIKVMDGALFTHFELQIVFMRGCLELLQRC------------REVVTPDQIMFGSTQS 177 (179)
Q Consensus 113 lvyDit~~~Sf~~l-~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~~------------r~Vs~~e~~~~a~~~~ 177 (179)
+|||+++++||+.+ ..|+..+.+..+. .|+++||||+|+.+. |.++.+++.+++++.+
T Consensus 102 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~-------~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 172 (201)
T 2gco_A 102 MCFSIDSPDSLENIPEKWTPEVKHFCPN-------VPIILVGNKKDLRQDEHTRRELAKMKQEPVRSEEGRDMANRIS 172 (201)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHSTT-------CCEEEEEECGGGTTCHHHHHHHHTTTCCCCCHHHHHHHHHHTT
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHhCCC-------CCEEEEEecHHhhcCccchhhhcccccCcCCHHHHHHHHHhCC
Confidence 99999999999999 7899998876544 688999999999765 7799999999998764
No 66
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=99.86 E-value=4.1e-21 Score=147.06 Aligned_cols=131 Identities=14% Similarity=0.204 Sum_probs=107.3
Q ss_pred ceeeEEE-EeCCCCc---eeEeee-ccCCCcccCcceeeeeEEEEEecCCCe--e--eeCCCchhchhhhhhhhcCCcEE
Q psy15036 41 SFNFGTQ-LGRRGIP---LLKHLK-YLGTGTHGKTVGIVFPAISVTYSIGPR--Y--FRFPLVSRFLSLTTGLYRGTMGF 111 (179)
Q Consensus 41 ~~~~Kiv-lG~~gvG---~~~~~~-~~~~~~~~~Ti~~~~~~k~v~~~~~~~--i--wDt~G~e~~~~~~~~~~~~~~~v 111 (179)
...+||+ +|+.||| ++..+. ..+...+.+|++.......+...++.. + |||+|++++..+...+++++|++
T Consensus 9 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 88 (218)
T 4djt_A 9 ELTYKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQEKKAVLKDVYYIGASGA 88 (218)
T ss_dssp -CEEEEEEECCTTSSHHHHHCBCTTCSTTCEEETTTTEEEEEEEEEBTTSCEEEEEEEEECSGGGTSCCCHHHHTTCSEE
T ss_pred cCccEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeeEEEEEEeCCCcEEEEEEEecCCchhhchHHHHHhhcCCEE
Confidence 4579997 9999999 666666 556778889998877666655541322 3 99999999999999999999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCCCCCCCHHHHHHHHhhhC
Q psy15036 112 LLIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQRCREVVTPDQIMFGSTQS 177 (179)
Q Consensus 112 ilvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~~r~Vs~~e~~~~a~~~~ 177 (179)
|+|||++++.||+++..|+..+......+ .|++|||||+|+.+.++++.+++.++++...
T Consensus 89 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~------~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~ 148 (218)
T 4djt_A 89 ILFFDVTSRITCQNLARWVKEFQAVVGNE------APIVVCANKIDIKNRQKISKKLVMEVLKGKN 148 (218)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHHCSS------SCEEEEEECTTCC----CCHHHHHHHTTTCC
T ss_pred EEEEeCCCHHHHHHHHHHHHHHHHhcCCC------CCEEEEEECCCCccccccCHHHHHHHHHHcC
Confidence 99999999999999999999999887665 6889999999999888999999999987654
No 67
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=99.86 E-value=4.5e-21 Score=144.98 Aligned_cols=129 Identities=16% Similarity=0.135 Sum_probs=109.3
Q ss_pred eeeEEE-EeCCCCc---eeEeee-ccCCCcccCcceeeeeEEEEEecCCCee----eeCCCchhchhhhhhhhcCCcEEE
Q psy15036 42 FNFGTQ-LGRRGIP---LLKHLK-YLGTGTHGKTVGIVFPAISVTYSIGPRY----FRFPLVSRFLSLTTGLYRGTMGFL 112 (179)
Q Consensus 42 ~~~Kiv-lG~~gvG---~~~~~~-~~~~~~~~~Ti~~~~~~k~v~~~~~~~i----wDt~G~e~~~~~~~~~~~~~~~vi 112 (179)
..+||+ +|+.||| ++..+. ..+...+.+|.+..+ ...+.++ +..+ ||++|++++..+...+++.+++++
T Consensus 13 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~-~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~i 90 (206)
T 2bov_A 13 ALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLD-GEEVQIDILDTAGQEDYAAIRDNYFRSGEGFL 90 (206)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCTTCCEEE-EEEEEET-TEEEEEEEEECCCTTCCHHHHHHHHHHCSEEE
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEE-EEEEEEC-CEEEEEEEEcCCChhhhHHHHHHHHhhCCEEE
Confidence 468997 9999999 655555 556778889988666 4667777 6543 999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCCCCCCCHHHHHHHHhhhC
Q psy15036 113 LIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQRCREVVTPDQIMFGSTQS 177 (179)
Q Consensus 113 lvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~~r~Vs~~e~~~~a~~~~ 177 (179)
+|||+++++||+.+..|+..+.+..... ..|++|||||+|+.+.++++.+++.+++++..
T Consensus 91 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~-----~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~ 150 (206)
T 2bov_A 91 CVFSITEMESFAATADFREQILRVKEDE-----NVPFLLVGNKSDLEDKRQVSVEEAKNRAEQWN 150 (206)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHTTCS-----CCCEEEEEECTTCGGGCCSCHHHHHHHHHHHT
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhcCCC-----CCCEEEEEeccCccccccccHHHHHHHHHHhC
Confidence 9999999999999999999998876421 16889999999999889999999999998654
No 68
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=99.86 E-value=1.3e-22 Score=152.05 Aligned_cols=128 Identities=16% Similarity=0.226 Sum_probs=92.9
Q ss_pred eeEEE-EeCCCCc---eeEeeec---cCCCcccCcceeeeeEEEEEe---c-CCCee--eeCCCchhchhhhhhhhcCCc
Q psy15036 43 NFGTQ-LGRRGIP---LLKHLKY---LGTGTHGKTVGIVFPAISVTY---S-IGPRY--FRFPLVSRFLSLTTGLYRGTM 109 (179)
Q Consensus 43 ~~Kiv-lG~~gvG---~~~~~~~---~~~~~~~~Ti~~~~~~k~v~~---~-~~~~i--wDt~G~e~~~~~~~~~~~~~~ 109 (179)
.+||+ +|++||| +++++.. .+...+.+|+|.++..+.+.+ + ....+ |||+|+++|..+.+.|+++++
T Consensus 2 ~~kv~ivG~~gvGKStLl~~l~~~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ 81 (184)
T 2zej_A 2 RMKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNVWDFAGREEFYSTHPHFMTQRA 81 (184)
T ss_dssp -CEEEEESCTTSSHHHHHHHHTCC-----------CSEEEEEEEC---------CEEEEEEECSHHHHHTTSHHHHHHSE
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCccCCCcceeccEEeEEeeeccccCCCCceEEEEEecCCCHHHHHhhHHHccCCc
Confidence 47997 9999999 6666654 355678899998887666554 1 02233 999999999999999999999
Q ss_pred EEEEEEeCCCh-hhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCCCCCCC---HHHHHHHHhhhC
Q psy15036 110 GFLLIFDVTNE-NSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQRCREVV---TPDQIMFGSTQS 177 (179)
Q Consensus 110 ~vilvyDit~~-~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~~r~Vs---~~e~~~~a~~~~ 177 (179)
++++|||++++ .||+++..|+.++....+. +|++|||||+|+.+.+.++ .+++.++|++.+
T Consensus 82 ~~i~v~d~~~~~~s~~~~~~~~~~~~~~~~~-------~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~ 146 (184)
T 2zej_A 82 LYLAVYDLSKGQAEVDAMKPWLFNIKARASS-------SPVILVGTHLDVSDEKQRKACMSKITKELLNKRG 146 (184)
T ss_dssp EEEEEEEGGGCHHHHHTHHHHHHHHHHHCTT-------CEEEEEEECGGGCCHHHHHHHHHHHHHHTTTCTT
T ss_pred EEEEEEeCCcchhHHHHHHHHHHHHHhhCCC-------CcEEEEEECCCcccchhhHHHHHHHHHHHHHhcC
Confidence 99999999997 5899999999999876543 6899999999998766654 455677776543
No 69
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=99.86 E-value=4.6e-21 Score=142.37 Aligned_cols=129 Identities=16% Similarity=0.134 Sum_probs=109.0
Q ss_pred eeeEEE-EeCCCCc---eeEeee-ccCCCcccCcceeeeeEEEEEecCCCee----eeCCCchhchhhhhhhhcCCcEEE
Q psy15036 42 FNFGTQ-LGRRGIP---LLKHLK-YLGTGTHGKTVGIVFPAISVTYSIGPRY----FRFPLVSRFLSLTTGLYRGTMGFL 112 (179)
Q Consensus 42 ~~~Kiv-lG~~gvG---~~~~~~-~~~~~~~~~Ti~~~~~~k~v~~~~~~~i----wDt~G~e~~~~~~~~~~~~~~~vi 112 (179)
..+||+ +|+.||| +++.+. ..+...+.+|.+..+. +.+.++ +..+ ||++|++++..+...+++.+|+++
T Consensus 17 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~-~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 94 (187)
T 2a9k_A 17 ALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYR-KKVVLD-GEEVQIDILDTAGQEDYAAIRDNYFRSGEGFL 94 (187)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCTTCCEEEE-EEEEET-TEEEEEEEEECCCTTCCHHHHHHHHHHCSEEE
T ss_pred CceEEEEECCCCCCHHHHHHHHhhCCCCCcCCCccceEEE-EEEEEC-CEEEEEEEEECCCCcccHHHHHHHhccCCEEE
Confidence 469997 9999999 665555 5567778888886663 556677 6543 999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCCCCCCCHHHHHHHHhhhC
Q psy15036 113 LIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQRCREVVTPDQIMFGSTQS 177 (179)
Q Consensus 113 lvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~~r~Vs~~e~~~~a~~~~ 177 (179)
+|||++++++|+.+..|+.++.+..... ..|+++|+||+|+.+.++++.+++++++++..
T Consensus 95 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~-----~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~ 154 (187)
T 2a9k_A 95 CVFSITEMESFAATADFREQILRVKEDE-----NVPFLLVGNKSDLEDKRQVSVEEAKNRAEQWN 154 (187)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHHCCT-----TCCEEEEEECGGGGGGCCSCHHHHHHHHHHTT
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhcCCC-----CCCEEEEEECccccccCccCHHHHHHHHHHcC
Confidence 9999999999999999999998876531 16889999999999889999999999998754
No 70
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.86 E-value=3.7e-21 Score=145.20 Aligned_cols=127 Identities=17% Similarity=0.166 Sum_probs=107.6
Q ss_pred eeeEEE-EeCCCCc---eeEeee-ccCCCcccCcceeeeeEEEEEecCCCee----eeCCCchhchhhhhhhhcCCcEEE
Q psy15036 42 FNFGTQ-LGRRGIP---LLKHLK-YLGTGTHGKTVGIVFPAISVTYSIGPRY----FRFPLVSRFLSLTTGLYRGTMGFL 112 (179)
Q Consensus 42 ~~~Kiv-lG~~gvG---~~~~~~-~~~~~~~~~Ti~~~~~~k~v~~~~~~~i----wDt~G~e~~~~~~~~~~~~~~~vi 112 (179)
..+||+ +|+.||| ++.++. ..+...+.+|++..+ .+.+.++ +..+ ||++|+++ ..+...+++.+++++
T Consensus 27 ~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~-~~~~~~~l~Dt~G~~~-~~~~~~~~~~~d~ii 103 (196)
T 2atv_A 27 AEVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTY-RHQATID-DEVVSMEILDTAGQED-TIQREGHMRWGEGFV 103 (196)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEET-TEEEEEEEEECCCCCC-CHHHHHHHHHCSEEE
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCCcccCCCCCceE-EEEEEEC-CEEEEEEEEECCCCCc-ccchhhhhccCCEEE
Confidence 479997 9999999 666655 556778889998766 4566777 6554 99999998 788899999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHHHhC-CccCccccceEEEEeeCCCcCCCCCCCHHHHHHHHhhhC
Q psy15036 113 LIFDVTNENSFKDVEKWLLQIKVMDG-ALFTHFELQIVFMRGCLELLQRCREVVTPDQIMFGSTQS 177 (179)
Q Consensus 113 lvyDit~~~Sf~~l~~w~~~i~~~~~-~~~~~~~~~~iilvGnK~Dl~~~r~Vs~~e~~~~a~~~~ 177 (179)
+|||+++++||+++..|+..+.+... .+ .|++|||||+|+.+.|+++.+++++++++..
T Consensus 104 lv~D~~~~~s~~~~~~~~~~i~~~~~~~~------~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~ 163 (196)
T 2atv_A 104 LVYDITDRGSFEEVLPLKNILDEIKKPKN------VTLILVGNKADLDHSRQVSTEEGEKLATELA 163 (196)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHHTTSC------CCEEEEEECGGGGGGCCSCHHHHHHHHHHHT
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhhCCCC------CcEEEEEECcccccccccCHHHHHHHHHHhC
Confidence 99999999999999999999987654 23 6889999999999889999999999998754
No 71
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=99.85 E-value=2.2e-21 Score=148.87 Aligned_cols=127 Identities=18% Similarity=0.211 Sum_probs=87.4
Q ss_pred eeeEEE-EeCCCCc---eeEeee-ccCCCcccCcceeeeeEEEEEecCCCee----eeCCCchhchhhhhhhhcCCcEEE
Q psy15036 42 FNFGTQ-LGRRGIP---LLKHLK-YLGTGTHGKTVGIVFPAISVTYSIGPRY----FRFPLVSRFLSLTTGLYRGTMGFL 112 (179)
Q Consensus 42 ~~~Kiv-lG~~gvG---~~~~~~-~~~~~~~~~Ti~~~~~~k~v~~~~~~~i----wDt~G~e~~~~~~~~~~~~~~~vi 112 (179)
..+||+ +|+.||| ++..+. ..+...+.+|++..+ .+.+.++ +..+ |||+|+++|..++..++++++++|
T Consensus 33 ~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~-~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i 110 (214)
T 2j1l_A 33 RSVKVVLVGDGGCGKTSLLMVFADGAFPESYTPTVFERY-MVNLQVK-GKPVHLHIWDTAGQDDYDRLRPLFYPDASVLL 110 (214)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHC-------CCCCCEEE-EEEEEET-TEEEEEEEEEC---------------CEEEEE
T ss_pred ceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCccceeE-EEEEEEC-CEEEEEEEEECCCchhhhHHHHHHhccCCEEE
Confidence 468997 9999999 555555 456677888887655 4567777 7654 999999999999999999999999
Q ss_pred EEEeCCChhhHHHHH-HHHHHHHHHhCCccCccccceEEEEeeCCCcCCC------------CCCCHHHHHHHHhhhC
Q psy15036 113 LIFDVTNENSFKDVE-KWLLQIKVMDGALFTHFELQIVFMRGCLELLQRC------------REVVTPDQIMFGSTQS 177 (179)
Q Consensus 113 lvyDit~~~Sf~~l~-~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~~------------r~Vs~~e~~~~a~~~~ 177 (179)
+|||+++++||+++. .|+..+.+.... .|++|||||+|+... |.++.+++.++|++.+
T Consensus 111 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~-------~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 181 (214)
T 2j1l_A 111 LCFDVTSPNSFDNIFNRWYPEVNHFCKK-------VPIIVVGCKTDLRKDKSLVNKLRRNGLEPVTYHRGQEMARSVG 181 (214)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHCSS-------CCEEEEEECGGGGSCHHHHHHHHHTTCCCCCHHHHHHHHHHTT
T ss_pred EEEECcCHHHHHHHHHHHHHHHHHhCCC-------CCEEEEEEChhhhccchhhhhhcccccCcccHHHHHHHHHhcC
Confidence 999999999999996 899999876544 688999999999764 4899999999998765
No 72
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=99.85 E-value=4e-21 Score=142.76 Aligned_cols=127 Identities=17% Similarity=0.158 Sum_probs=107.0
Q ss_pred eeeEEE-EeCCCCc---eeEeee-ccCCCcccCcceeeeeEEEEEecCCCee----eeCCCchhchhhhhhhhcCCcEEE
Q psy15036 42 FNFGTQ-LGRRGIP---LLKHLK-YLGTGTHGKTVGIVFPAISVTYSIGPRY----FRFPLVSRFLSLTTGLYRGTMGFL 112 (179)
Q Consensus 42 ~~~Kiv-lG~~gvG---~~~~~~-~~~~~~~~~Ti~~~~~~k~v~~~~~~~i----wDt~G~e~~~~~~~~~~~~~~~vi 112 (179)
..+||+ +|+.||| ++..+. ..+...+.+|++..+ ...+.++ +..+ ||++|+++|..+...+++++|+++
T Consensus 4 ~~~~i~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~-~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 81 (186)
T 1mh1_A 4 QAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVD-GKPVNLGLWDTAGQEDYDRLRPLSYPQTDVSL 81 (186)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSSCCSSCCCCSCCEE-EEEEEET-TEEEEEEEECCCCSGGGTTTGGGGCTTCSEEE
T ss_pred cEEEEEEECCCCCCHHHHHHHHHcCCCCCCcCCccccee-EEEEEEC-CEEEEEEEEECCCCHhHHHHHHHhccCCcEEE
Confidence 368997 9999999 665555 556777888988655 4566777 6665 999999999999999999999999
Q ss_pred EEEeCCChhhHHHHH-HHHHHHHHHhCCccCccccceEEEEeeCCCcCCC------------CCCCHHHHHHHHhhhC
Q psy15036 113 LIFDVTNENSFKDVE-KWLLQIKVMDGALFTHFELQIVFMRGCLELLQRC------------REVVTPDQIMFGSTQS 177 (179)
Q Consensus 113 lvyDit~~~Sf~~l~-~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~~------------r~Vs~~e~~~~a~~~~ 177 (179)
+|||+++++||+++. .|+..+.+..+. .|+++||||+|+.+. |.++.+++.+++++.+
T Consensus 82 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~-------~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 152 (186)
T 1mh1_A 82 ICFSLVSPASFENVRAKWYPEVRHHCPN-------TPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIG 152 (186)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHSTT-------SCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTT
T ss_pred EEEECCChhhHHHHHHHHHHHHHHhCCC-------CCEEEEeEcccccccchhhhhhcccccccCCHHHHHHHHHhcC
Confidence 999999999999997 899999887653 688999999999653 7899999999998764
No 73
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=99.85 E-value=8.2e-21 Score=143.85 Aligned_cols=131 Identities=22% Similarity=0.450 Sum_probs=110.9
Q ss_pred CceeeEEE-EeCCCCc---eeEeee-ccCCCcccCcceeeeeEEEEEecCCCee----eeCCCchhchhhhhhhhcCCcE
Q psy15036 40 FSFNFGTQ-LGRRGIP---LLKHLK-YLGTGTHGKTVGIVFPAISVTYSIGPRY----FRFPLVSRFLSLTTGLYRGTMG 110 (179)
Q Consensus 40 ~~~~~Kiv-lG~~gvG---~~~~~~-~~~~~~~~~Ti~~~~~~k~v~~~~~~~i----wDt~G~e~~~~~~~~~~~~~~~ 110 (179)
+++.+||+ +|+.||| +++.+. ..+...+.||++.++....+.++ +..+ ||++|+++++.+...+++++++
T Consensus 2 ~~~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~-g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~ 80 (199)
T 2f9l_A 2 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVD-GKTIKAQIWDTAGQERYRRITSAYYRGAVG 80 (199)
T ss_dssp CSEEEEEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEET-TEEEEEEEEECSSGGGTTCCCHHHHTTCSE
T ss_pred CcceEEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEEC-CEEEEEEEEECCCchhhhhhhHHHHhcCCE
Confidence 35789997 9999999 666666 44667788999988888888898 8765 9999999999999999999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCCCCCCCHHHHHHHHhhhC
Q psy15036 111 FLLIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQRCREVVTPDQIMFGSTQS 177 (179)
Q Consensus 111 vilvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~~r~Vs~~e~~~~a~~~~ 177 (179)
+++|||++++.+|+++..|+..+....... .|+++|+||+||.+.+.++.+++++++.+..
T Consensus 81 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~------~~i~~v~nK~Dl~~~~~~~~~~a~~l~~~~~ 141 (199)
T 2f9l_A 81 ALLVYDIAKHLTYENVERWLKELRDHADSN------IVIMLVGNKSDLRHLRAVPTDEARAFAEKNN 141 (199)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHSCTT------CEEEEEEECTTCGGGCCSCHHHHHHHHHHTT
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHhcCCC------CeEEEEEECcccccccCcCHHHHHHHHHHcC
Confidence 999999999999999999999887664433 6889999999999889999999999998654
No 74
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=99.85 E-value=2.1e-21 Score=149.24 Aligned_cols=128 Identities=18% Similarity=0.240 Sum_probs=106.2
Q ss_pred cCceeeEEE-EeCCCCc---eeEe-eeccCCCcccCcceeeeeEEEEEecCCCee----eeCCCchhchhhhhhhhcCCc
Q psy15036 39 EFSFNFGTQ-LGRRGIP---LLKH-LKYLGTGTHGKTVGIVFPAISVTYSIGPRY----FRFPLVSRFLSLTTGLYRGTM 109 (179)
Q Consensus 39 ~~~~~~Kiv-lG~~gvG---~~~~-~~~~~~~~~~~Ti~~~~~~k~v~~~~~~~i----wDt~G~e~~~~~~~~~~~~~~ 109 (179)
.....+||+ +|+.||| ++++ +.+.+...+.+|+|.++....+.++ +..+ |||+|+++|..++..++++++
T Consensus 11 ~~~~~~ki~v~G~~~~GKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~-~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ 89 (221)
T 3gj0_A 11 EPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTN-RGPIKFNVWDTAGQEKFGGLRDGYYIQAQ 89 (221)
T ss_dssp CCCCEEEEEEEECTTSSHHHHHTTBHHHHHTCEEETTTTEEEEEEEEEET-TEEEEEEEEEECSGGGTSCCCHHHHTTCC
T ss_pred CcccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEEC-CEEEEEEEEeCCChHHHhHHHHHHHhcCC
Confidence 455689998 9999999 5655 4466778889999988887888777 6655 999999999999999999999
Q ss_pred EEEEEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCCCCCCCHHHHHHHHhhh
Q psy15036 110 GFLLIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQRCREVVTPDQIMFGSTQ 176 (179)
Q Consensus 110 ~vilvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~~r~Vs~~e~~~~a~~~ 176 (179)
++|+|||+++++||+++..|+..+.+.... .|++|||||+|+.+.+ +.. ++.+++++.
T Consensus 90 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-------~p~ilv~nK~Dl~~~~-~~~-~~~~~~~~~ 147 (221)
T 3gj0_A 90 CAIIMFDVTSRVTYKNVPNWHRDLVRVCEN-------IPIVLCGNKVDIKDRK-VKA-KSIVFHRKK 147 (221)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHSTT-------CCEEEEEECTTSSSCS-SCG-GGCCHHHHH
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhCCC-------CCEEEEEECCcccccc-ccH-HHHHHHHHc
Confidence 999999999999999999999999987654 6889999999997643 332 555565544
No 75
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*
Probab=99.85 E-value=3.5e-22 Score=163.07 Aligned_cols=120 Identities=9% Similarity=-0.015 Sum_probs=88.4
Q ss_pred EEE-EeCCCCc---eeEeeeccCCC----cccCcceeeeeEEEEEecCCCee--eeCCCchhchh---hhhhhhcCCcEE
Q psy15036 45 GTQ-LGRRGIP---LLKHLKYLGTG----THGKTVGIVFPAISVTYSIGPRY--FRFPLVSRFLS---LTTGLYRGTMGF 111 (179)
Q Consensus 45 Kiv-lG~~gvG---~~~~~~~~~~~----~~~~Ti~~~~~~k~v~~~~~~~i--wDt~G~e~~~~---~~~~~~~~~~~v 111 (179)
||| +|++||| ++.++...+.+ .+.||+|.++.. + +..-.+ |||+|||+|+. +++.||++++++
T Consensus 1 KIvllGdsgvGKTSLl~~~~~~~~~~~~~~~~~Tig~~~~~--v--~~~v~LqIWDTAGQErf~~~~l~~~~yyr~a~~~ 76 (331)
T 3r7w_B 1 MVLLMGVRRCGKSSICKVVFHNMQPLDTLYLESTSNPSLEH--F--STLIDLAVMELPGQLNYFEPSYDSERLFKSVGAL 76 (331)
T ss_dssp CEEEECSTTSSTTHHHHHHHSCCCSGGGTTCCCCCSCCCEE--E--CSSSCEEEEECCSCSSSCCCSHHHHHHHTTCSEE
T ss_pred CEEEECCCCCCHHHHHHHHHcCCCCCccceecCeeeeeeEE--E--ccEEEEEEEECCCchhccchhhhhhhhccCCCEE
Confidence 677 9999999 55444333322 367999988752 2 302233 99999999974 478999999999
Q ss_pred EEEEeCCCh--hhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCCC-------CCCCHHHHHHHHhh
Q psy15036 112 LLIFDVTNE--NSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQRC-------REVVTPDQIMFGST 175 (179)
Q Consensus 112 ilvyDit~~--~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~~-------r~Vs~~e~~~~a~~ 175 (179)
|+|||++++ ++++.+..|++++.+..+. .|++|||||+||.++ |+|+.++++++|++
T Consensus 77 IlV~Ditd~~~~~~~~l~~~l~~~~~~~~~-------ipillvgNK~DL~~~~~R~~~~R~V~~~~~~~la~~ 142 (331)
T 3r7w_B 77 VYVIDSQDEYINAITNLAMIIEYAYKVNPS-------INIEVLIHKVDGLSEDFKVDAQRDIMQRTGEELLEL 142 (331)
T ss_dssp EEECCCSSCTTHHHHHHHHHHHHHHHHCTT-------CEEEEECCCCCSSCSHHHHHHHHHHHHHHHHTTSSS
T ss_pred EEEEECCchHHHHHHHHHHHHHHHhhcCCC-------CcEEEEEECcccCchhhhhhHHHHhhHHHHHHHHhh
Confidence 999999998 3344444455555554433 689999999999763 68999999999985
No 76
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=99.85 E-value=4.2e-21 Score=146.26 Aligned_cols=127 Identities=17% Similarity=0.200 Sum_probs=105.2
Q ss_pred eeeEEE-EeCCCCc---eeEeee-ccCCCcccCcceeeeeEEEEEecCCCee----eeCCCchhchhhhhhhhcCCcEEE
Q psy15036 42 FNFGTQ-LGRRGIP---LLKHLK-YLGTGTHGKTVGIVFPAISVTYSIGPRY----FRFPLVSRFLSLTTGLYRGTMGFL 112 (179)
Q Consensus 42 ~~~Kiv-lG~~gvG---~~~~~~-~~~~~~~~~Ti~~~~~~k~v~~~~~~~i----wDt~G~e~~~~~~~~~~~~~~~vi 112 (179)
..+||+ +|+.||| ++.++. ..+...+.+|++..+ ...+.++ +..+ |||+|+++|..+...+++++|+++
T Consensus 29 ~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~-~~~~~~~-~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i 106 (204)
T 4gzl_A 29 QAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVD-GKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFL 106 (204)
T ss_dssp -CEEEEEEESTTSSHHHHHHHHHHSCCCC-CCCCSEEEE-EEEEECC--CEEEEEEEEECCSGGGTTTGGGGCTTCSEEE
T ss_pred CeEEEEEECcCCCCHHHHHHHHHhCCCCCCcCCeeccee-EEEEEEC-CEEEEEEEEECCCchhhHHHHHHHhccCCEEE
Confidence 479997 9999999 565555 556777888887544 5677777 7765 999999999999999999999999
Q ss_pred EEEeCCChhhHHHHH-HHHHHHHHHhCCccCccccceEEEEeeCCCcCCCC------------CCCHHHHHHHHhhhC
Q psy15036 113 LIFDVTNENSFKDVE-KWLLQIKVMDGALFTHFELQIVFMRGCLELLQRCR------------EVVTPDQIMFGSTQS 177 (179)
Q Consensus 113 lvyDit~~~Sf~~l~-~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~~r------------~Vs~~e~~~~a~~~~ 177 (179)
+|||+++++||+++. .|+..+...... .|+++||||+|+.+.+ .++.+++..++++.+
T Consensus 107 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~-------~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 177 (204)
T 4gzl_A 107 ICFSLVSPASFENVRAKWYPEVRHHCPN-------TPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIG 177 (204)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHCSS-------CCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTT
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHhCCC-------CCEEEEEechhhccchhhhhhhhccccccccHHHHHHHHHhcC
Confidence 999999999999996 899999887644 6889999999997654 489999999998765
No 77
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=99.85 E-value=9.8e-21 Score=142.92 Aligned_cols=132 Identities=23% Similarity=0.466 Sum_probs=114.8
Q ss_pred cCceeeEEE-EeCCCCc---eeEeee-ccCCCcccCcceeeeeEEEEEecCCCee----eeCCCchhchhhhhhhhcCCc
Q psy15036 39 EFSFNFGTQ-LGRRGIP---LLKHLK-YLGTGTHGKTVGIVFPAISVTYSIGPRY----FRFPLVSRFLSLTTGLYRGTM 109 (179)
Q Consensus 39 ~~~~~~Kiv-lG~~gvG---~~~~~~-~~~~~~~~~Ti~~~~~~k~v~~~~~~~i----wDt~G~e~~~~~~~~~~~~~~ 109 (179)
++++.+||+ +|+.||| +++.+. ..+...+.||++.++....+.++ +..+ ||++|++++..+...+++.++
T Consensus 25 ~~~~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~-g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~ 103 (191)
T 1oix_A 25 EYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVD-GKTIKAQIWDTAGLERYRAITSAYYRGAV 103 (191)
T ss_dssp CCSEEEEEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEET-TEEEEEEEEEECSCCSSSCCCHHHHTTCC
T ss_pred ccCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEEC-CEEEEEEEEECCCCcchhhhhHHHhhcCC
Confidence 567789997 9999999 666666 44667888999999988899998 8765 999999999999999999999
Q ss_pred EEEEEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCCCCCCCHHHHHHHHhhhC
Q psy15036 110 GFLLIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQRCREVVTPDQIMFGSTQS 177 (179)
Q Consensus 110 ~vilvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~~r~Vs~~e~~~~a~~~~ 177 (179)
++++|||++++.||+++..|+..+.+..... .|+++|+||+||.+.+.++.++++++|.+..
T Consensus 104 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~------~~i~~v~nK~Dl~~~~~~~~~~a~~l~~~~~ 165 (191)
T 1oix_A 104 GALLVYDIAKHLTYENVERWLKELRDHADSN------IVIMLVGNKSDLRHLRAVPTDEARAFAEKNG 165 (191)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHSCTT------CEEEEEEECGGGGGGCCSCHHHHHHHHHHTT
T ss_pred EEEEEEECcCHHHHHHHHHHHHHHHHhcCCC------CcEEEEEECcccccccccCHHHHHHHHHHcC
Confidence 9999999999999999999999887654443 6889999999999888999999999998754
No 78
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=99.85 E-value=5.1e-22 Score=147.31 Aligned_cols=127 Identities=18% Similarity=0.188 Sum_probs=92.5
Q ss_pred eeeEEE-EeCCCCc---eeEeee-ccCCCcccCcceeeeeEEEEEecCCCee----eeCCCchhchhhhhhhhcCCcEEE
Q psy15036 42 FNFGTQ-LGRRGIP---LLKHLK-YLGTGTHGKTVGIVFPAISVTYSIGPRY----FRFPLVSRFLSLTTGLYRGTMGFL 112 (179)
Q Consensus 42 ~~~Kiv-lG~~gvG---~~~~~~-~~~~~~~~~Ti~~~~~~k~v~~~~~~~i----wDt~G~e~~~~~~~~~~~~~~~vi 112 (179)
..+||+ +|+.||| ++..+. ..+...+.||++..+. +.+.++ +..+ |||+|+++|..++..+++++|+++
T Consensus 7 ~~~ki~v~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~~-~~~~~~-~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 84 (182)
T 3bwd_D 7 RFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFS-ANVVVN-GATVNLGLWDTAGQEDYNRLRPLSYRGADVFI 84 (182)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHSCCC----------CB-CCCC--------CEEECCCC-CTTTTTGGGGGTTCSEEE
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCeeeeeEE-EEEEEC-CEEEEEEEEECCCChhhhhhHHhhccCCCEEE
Confidence 468997 9999999 555555 5567788888886553 334455 5444 999999999999999999999999
Q ss_pred EEEeCCChhhHHHHH-HHHHHHHHHhCCccCccccceEEEEeeCCCcCCCCC----------CCHHHHHHHHhhhC
Q psy15036 113 LIFDVTNENSFKDVE-KWLLQIKVMDGALFTHFELQIVFMRGCLELLQRCRE----------VVTPDQIMFGSTQS 177 (179)
Q Consensus 113 lvyDit~~~Sf~~l~-~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~~r~----------Vs~~e~~~~a~~~~ 177 (179)
+|||+++++||+++. .|+..+.+..+. .|+++||||+|+.+++. ++.+++.+++++.+
T Consensus 85 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~-------~piilv~nK~Dl~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 153 (182)
T 3bwd_D 85 LAFSLISKASYENVSKKWIPELKHYAPG-------VPIVLVGTKLDLRDDKQFFIDHPGAVPITTVQGEELKKLIG 153 (182)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHCTT-------CCEEEEEECHHHHTCHHHHHHC--CCCCCHHHHHHHHHHHT
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHhCCC-------CCEEEEEechhhhcCcccccccccCCCCCHHHHHHHHHHcC
Confidence 999999999999997 799999887543 68899999999976654 58999999998765
No 79
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=99.85 E-value=5.6e-21 Score=145.01 Aligned_cols=122 Identities=14% Similarity=0.057 Sum_probs=93.4
Q ss_pred eeEEE-EeCCCCc---eeEeeeccCCCcccCcceeeeeEEEEEecCCCee--eeCCCchhchhhhhhhhcCCcEEEEEEe
Q psy15036 43 NFGTQ-LGRRGIP---LLKHLKYLGTGTHGKTVGIVFPAISVTYSIGPRY--FRFPLVSRFLSLTTGLYRGTMGFLLIFD 116 (179)
Q Consensus 43 ~~Kiv-lG~~gvG---~~~~~~~~~~~~~~~Ti~~~~~~k~v~~~~~~~i--wDt~G~e~~~~~~~~~~~~~~~vilvyD 116 (179)
.+||+ +|++||| +++++.......+.||++... +.+.++ +..+ |||+|+++++.++..|++++|++++|||
T Consensus 25 ~~ki~lvG~~~vGKSsLi~~l~~~~~~~~~~t~~~~~--~~~~~~-~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D 101 (198)
T 1f6b_A 25 TGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTS--EELTIA-GMTFTTFDLGGHIQARRVWKNYLPAINGIVFLVD 101 (198)
T ss_dssp CEEEEEEEETTSSHHHHHHHHSCC------CCCCCSC--EEEEET-TEEEEEEEECC----CCGGGGGGGGCSEEEEEEE
T ss_pred CcEEEEECCCCCCHHHHHHHHhcCCCCccCCCCCcee--EEEEEC-CEEEEEEECCCcHhhHHHHHHHHhcCCEEEEEEE
Confidence 57897 9999999 666666433356778888653 567778 7666 9999999999999999999999999999
Q ss_pred CCChhhHHHHHHHHHHHHHHhC-CccCccccceEEEEeeCCCcCCCCCCCHHHHHHHHhh
Q psy15036 117 VTNENSFKDVEKWLLQIKVMDG-ALFTHFELQIVFMRGCLELLQRCREVVTPDQIMFGST 175 (179)
Q Consensus 117 it~~~Sf~~l~~w~~~i~~~~~-~~~~~~~~~~iilvGnK~Dl~~~r~Vs~~e~~~~a~~ 175 (179)
+++++||+++..|+.++.+... .+ .|+++||||+|+.+ +++.+++++++..
T Consensus 102 ~~~~~s~~~~~~~~~~~~~~~~~~~------~piilv~NK~Dl~~--~~~~~~~~~~~~~ 153 (198)
T 1f6b_A 102 CADHERLLESKEELDSLMTDETIAN------VPILILGNKIDRPE--AISEERLREMFGL 153 (198)
T ss_dssp TTCGGGHHHHHHHHHHHHTCGGGTT------SCEEEEEECTTSTT--CCCHHHHHHHHTC
T ss_pred CCCHHHHHHHHHHHHHHHhCcccCC------CcEEEEEECCCccc--cCCHHHHHHHhCc
Confidence 9999999999999999876532 22 68899999999975 7889999888763
No 80
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.84 E-value=1.4e-20 Score=143.39 Aligned_cols=127 Identities=17% Similarity=0.121 Sum_probs=100.3
Q ss_pred eeeEEE-EeCCCCc---eeEeee-ccCCCcccCcceeeeeEEEEEecCCCee----eeCCCchhchhhhhhhhcCCcEEE
Q psy15036 42 FNFGTQ-LGRRGIP---LLKHLK-YLGTGTHGKTVGIVFPAISVTYSIGPRY----FRFPLVSRFLSLTTGLYRGTMGFL 112 (179)
Q Consensus 42 ~~~Kiv-lG~~gvG---~~~~~~-~~~~~~~~~Ti~~~~~~k~v~~~~~~~i----wDt~G~e~~~~~~~~~~~~~~~vi 112 (179)
..+||+ +|+.||| ++..+. ..+...+.||++..+. ..+.++ +..+ |||+|++++..+...+++++|++|
T Consensus 24 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~-~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 101 (207)
T 2fv8_A 24 IRKKLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYV-ADIEVD-GKQVELALWDTAGQEDYDRLRPLSYPDTDVIL 101 (207)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHSSCC-------CCEEE-EEEEET-TEEEEEEEEECTTCTTCTTTGGGGCTTCCEEE
T ss_pred cCcEEEEECcCCCCHHHHHHHHhcCCCCCcCCCcccceEE-EEEEEC-CEEEEEEEEECCCcHHHHHHHHhhcCCCCEEE
Confidence 368997 9999999 655555 5566778889887765 446677 6544 999999999999999999999999
Q ss_pred EEEeCCChhhHHHH-HHHHHHHHHHhCCccCccccceEEEEeeCCCcCCC------------CCCCHHHHHHHHhhhC
Q psy15036 113 LIFDVTNENSFKDV-EKWLLQIKVMDGALFTHFELQIVFMRGCLELLQRC------------REVVTPDQIMFGSTQS 177 (179)
Q Consensus 113 lvyDit~~~Sf~~l-~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~~------------r~Vs~~e~~~~a~~~~ 177 (179)
+|||+++++||+.+ ..|+..+....+. .|+++||||+|+.+. +.++.+++.++|++..
T Consensus 102 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~-------~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 172 (207)
T 2fv8_A 102 MCFSVDSPDSLENIPEKWVPEVKHFCPN-------VPIILVANKKDLRSDEHVRTELARMKQEPVRTDDGRAMAVRIQ 172 (207)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHSTT-------CCEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHHHTT
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHhCCC-------CCEEEEEEchhhhccccchhhhhhcccCCCCHHHHHHHHHhcC
Confidence 99999999999999 7899998876544 588999999999765 6799999999998754
No 81
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.84 E-value=1.1e-20 Score=138.29 Aligned_cols=129 Identities=15% Similarity=0.154 Sum_probs=105.4
Q ss_pred eeEEE-EeCCCCc---eeEeee-ccCCCcccCcceeeeeEEEEEecCCCee----eeCCCchhchhhhhhhhcCCcEEEE
Q psy15036 43 NFGTQ-LGRRGIP---LLKHLK-YLGTGTHGKTVGIVFPAISVTYSIGPRY----FRFPLVSRFLSLTTGLYRGTMGFLL 113 (179)
Q Consensus 43 ~~Kiv-lG~~gvG---~~~~~~-~~~~~~~~~Ti~~~~~~k~v~~~~~~~i----wDt~G~e~~~~~~~~~~~~~~~vil 113 (179)
.+||+ +|+.||| +++.+. ..+...+.+|++..+. +.+..+ +..+ |||+|++++..+...+++.+|++++
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~-~~~~~~-~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i~ 80 (172)
T 2erx_A 3 DYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYR-QVISCD-KSICTLQITDTTGSHQFPAMQRLSISKGHAFIL 80 (172)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHTCCCCSSCCCCSCEEEE-EEEEET-TEEEEEEEEECCSCSSCHHHHHHHHHHCSEEEE
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccccEE-EEEEEC-CEEEEEEEEECCCchhhHHHHHHhcccCCEEEE
Confidence 58997 9999999 665555 4456678888886654 455565 5543 9999999999999999999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCCCCCCCHHHHHHHHhhhC
Q psy15036 114 IFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQRCREVVTPDQIMFGSTQS 177 (179)
Q Consensus 114 vyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~~r~Vs~~e~~~~a~~~~ 177 (179)
|||++++++|+.+..|+..+.+..... +..|+++|+||+|+.+.++++.+++..+++...
T Consensus 81 v~d~~~~~~~~~~~~~~~~i~~~~~~~----~~~pii~v~nK~Dl~~~~~v~~~~~~~~~~~~~ 140 (172)
T 2erx_A 81 VYSITSRQSLEELKPIYEQICEIKGDV----ESIPIMLVGNKCDESPSREVQSSEAEALARTWK 140 (172)
T ss_dssp EEETTCHHHHHTTHHHHHHHHHHHC-------CCCEEEEEECGGGGGGCCSCHHHHHHHHHHHT
T ss_pred EEECcCHHHHHHHHHHHHHHHHHhCCC----CCCCEEEEEEccccccccccCHHHHHHHHHHhC
Confidence 999999999999999999988765321 115889999999999889999999999987654
No 82
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=99.84 E-value=4.9e-20 Score=137.16 Aligned_cols=128 Identities=19% Similarity=0.188 Sum_probs=103.6
Q ss_pred eeeEEE-EeCCCCc---eeEeee-ccCCCcccCcceeeeeEEEEEecCCCee----eeCCCchhchhhhhhhhcCCcEEE
Q psy15036 42 FNFGTQ-LGRRGIP---LLKHLK-YLGTGTHGKTVGIVFPAISVTYSIGPRY----FRFPLVSRFLSLTTGLYRGTMGFL 112 (179)
Q Consensus 42 ~~~Kiv-lG~~gvG---~~~~~~-~~~~~~~~~Ti~~~~~~k~v~~~~~~~i----wDt~G~e~~~~~~~~~~~~~~~vi 112 (179)
..+||+ +|+.||| ++..+. ..+...+.+|.+.. ....+.++ +..+ ||++|++++..+...+++.+|+++
T Consensus 3 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~-~~~~~~~~-~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i 80 (189)
T 4dsu_A 3 TEYKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDS-YRKQVVID-GETCLLDILDTAGQEEYSAMRDQYMRTGEGFL 80 (189)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHSSCCCCCCTTCCEE-EEEEEEET-TEEEEEEEEECCCC---CTTHHHHHHHCSEEE
T ss_pred cEEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCchhe-EEEEEEEC-CcEEEEEEEECCCcHHHHHHHHHHHhcCCEEE
Confidence 468997 9999999 665555 45667778888643 44667777 7664 999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCCCCCCCHHHHHHHHhhhC
Q psy15036 113 LIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQRCREVVTPDQIMFGSTQS 177 (179)
Q Consensus 113 lvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~~r~Vs~~e~~~~a~~~~ 177 (179)
+|||+++++||+.+..|+..+.+..... ..|+++|+||+|+. .+.+..+++.+++++..
T Consensus 81 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~-----~~p~i~v~nK~Dl~-~~~~~~~~~~~~~~~~~ 139 (189)
T 4dsu_A 81 CVFAINNTKSFEDIHHYREQIKRVKDSE-----DVPMVLVGNKCDLP-SRTVDTKQAQDLARSYG 139 (189)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHTTCS-----CCCEEEEEECTTSS-SCSSCHHHHHHHHHHHT
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhcCCC-----CCcEEEEEECccCc-ccccCHHHHHHHHHHcC
Confidence 9999999999999999999998865431 16889999999997 47899999999998764
No 83
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=99.84 E-value=2.2e-20 Score=140.73 Aligned_cols=122 Identities=13% Similarity=0.026 Sum_probs=100.1
Q ss_pred eeEEE-EeCCCCc---eeEeeeccCCCcccCcceeeeeEEEEEecCCCee--eeCCCchhchhhhhhhhcCCcEEEEEEe
Q psy15036 43 NFGTQ-LGRRGIP---LLKHLKYLGTGTHGKTVGIVFPAISVTYSIGPRY--FRFPLVSRFLSLTTGLYRGTMGFLLIFD 116 (179)
Q Consensus 43 ~~Kiv-lG~~gvG---~~~~~~~~~~~~~~~Ti~~~~~~k~v~~~~~~~i--wDt~G~e~~~~~~~~~~~~~~~vilvyD 116 (179)
.+||+ +|++||| +++++.......+.||++.. .+.+.++ +..+ |||+|+++++.++..+++++|++++|||
T Consensus 23 ~~ki~~vG~~~vGKSsli~~l~~~~~~~~~~t~~~~--~~~~~~~-~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d 99 (190)
T 1m2o_B 23 HGKLLFLGLDNAGKTTLLHMLKNDRLATLQPTWHPT--SEELAIG-NIKFTTFDLGGHIQARRLWKDYFPEVNGIVFLVD 99 (190)
T ss_dssp -CEEEEEESTTSSHHHHHHHHHHSCCCCCCCCCSCE--EEEEEET-TEEEEEEECCCSGGGTTSGGGGCTTCCEEEEEEE
T ss_pred ccEEEEECCCCCCHHHHHHHHhcCCCCccccCCCCC--eEEEEEC-CEEEEEEECCCCHHHHHHHHHHHhcCCEEEEEEE
Confidence 57897 9999999 66666644345678888864 4577788 7666 9999999999999999999999999999
Q ss_pred CCChhhHHHHHHHHHHHHHHhC-CccCccccceEEEEeeCCCcCCCCCCCHHHHHHHHhh
Q psy15036 117 VTNENSFKDVEKWLLQIKVMDG-ALFTHFELQIVFMRGCLELLQRCREVVTPDQIMFGST 175 (179)
Q Consensus 117 it~~~Sf~~l~~w~~~i~~~~~-~~~~~~~~~~iilvGnK~Dl~~~r~Vs~~e~~~~a~~ 175 (179)
+++++||+++..|+.++.+... .+ +|+++||||+|+.+ +++.++++++++.
T Consensus 100 ~~~~~s~~~~~~~~~~~~~~~~~~~------~piilv~NK~Dl~~--~~~~~~~~~~~~~ 151 (190)
T 1m2o_B 100 AADPERFDEARVELDALFNIAELKD------VPFVILGNKIDAPN--AVSEAELRSALGL 151 (190)
T ss_dssp TTCGGGHHHHHHHHHHHHTCGGGTT------CCEEEEEECTTSTT--CCCHHHHHHHTTC
T ss_pred CCChHHHHHHHHHHHHHHcchhhcC------CCEEEEEECCCCcC--CCCHHHHHHHhCC
Confidence 9999999999999999876432 22 68999999999976 7888888877653
No 84
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=99.83 E-value=4.3e-21 Score=145.08 Aligned_cols=128 Identities=11% Similarity=0.021 Sum_probs=94.3
Q ss_pred ccCceeeEEE-EeCCCCc---eeEeeeccCCCcccCcceeeeeEEEEE--ecCCC--ee--eeCCCchhchhhh---hhh
Q psy15036 38 KEFSFNFGTQ-LGRRGIP---LLKHLKYLGTGTHGKTVGIVFPAISVT--YSIGP--RY--FRFPLVSRFLSLT---TGL 104 (179)
Q Consensus 38 ~~~~~~~Kiv-lG~~gvG---~~~~~~~~~~~~~~~Ti~~~~~~k~v~--~~~~~--~i--wDt~G~e~~~~~~---~~~ 104 (179)
...+..+||+ +|+.||| +++++.+.+... +|++.++..+.+. +.++. .+ ||++|+++|..+. ..|
T Consensus 15 ~~~~~~~ki~~vG~~~vGKTsLi~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ 92 (196)
T 3llu_A 15 YFQGSKPRILLMGLRRSGKSSIQKVVFHKMSPN--ETLFLESTNKIYKDDISNSSFVNFQIWDFPGQMDFFDPTFDYEMI 92 (196)
T ss_dssp -----CCEEEEEESTTSSHHHHHHHHHSCCCGG--GGGGCCCCCSCEEEEECCTTSCCEEEEECCSSCCTTCTTCCHHHH
T ss_pred cccCcceEEEEECCCCCCHHHHHHHHHhcCCCc--ceeeeccccceeeeeccCCCeeEEEEEECCCCHHHHhhhhhcccc
Confidence 3455689998 9999999 665555544443 5665555433332 32123 23 9999999998887 899
Q ss_pred hcCCcEEEEEEeCCCh--hhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCC-------CCCCCHHHHHHHHh
Q psy15036 105 YRGTMGFLLIFDVTNE--NSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQR-------CREVVTPDQIMFGS 174 (179)
Q Consensus 105 ~~~~~~vilvyDit~~--~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~-------~r~Vs~~e~~~~a~ 174 (179)
+++++++|+|||++++ ++++.+..|+.++...... .|++|||||+||.+ +|.|+.+++.++|+
T Consensus 93 ~~~~~~~i~v~d~~~~~~~~~~~~~~~l~~~~~~~~~-------~piilv~nK~Dl~~~~~~~~~~~~v~~~~~~~~~~ 164 (196)
T 3llu_A 93 FRGTGALIYVIDAQDDYMEALTRLHITVSKAYKVNPD-------MNFEVFIHKVDGLSDDHKIETQRDIHQRANDDLAD 164 (196)
T ss_dssp HHTCSEEEEEEETTSCCHHHHHHHHHHHHHHHHHCTT-------CEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCCEEEEEEECCCchHHHHHHHHHHHHHHHhcCCC-------CcEEEEEeccccCchhhhhHHHhHHHHHHHHHHHH
Confidence 9999999999999998 7888888888887654443 69999999999743 67888999999988
No 85
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=99.83 E-value=1e-19 Score=132.10 Aligned_cols=127 Identities=18% Similarity=0.222 Sum_probs=105.2
Q ss_pred eeEEE-EeCCCCc---eeEeee-ccCCCcccCcceeeeeEEEEEecCCCee----eeCCCchhchhhhhhhhcCCcEEEE
Q psy15036 43 NFGTQ-LGRRGIP---LLKHLK-YLGTGTHGKTVGIVFPAISVTYSIGPRY----FRFPLVSRFLSLTTGLYRGTMGFLL 113 (179)
Q Consensus 43 ~~Kiv-lG~~gvG---~~~~~~-~~~~~~~~~Ti~~~~~~k~v~~~~~~~i----wDt~G~e~~~~~~~~~~~~~~~vil 113 (179)
.+||+ +|+.|+| ++..+. ..+...+.+|.+..+ .+.+.++ +..+ ||++|++++..+...+++.+|++++
T Consensus 3 ~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~ 80 (166)
T 2ce2_X 3 EYKLVVVGAGGVGKSALTIQLIQNHFVDECDPTIEDSY-RKQVVID-GETCLLDILDTAGQEEYSAMRDQYMRTGEGFLC 80 (166)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEET-TEEEEEEEEECCCCSSCCHHHHHHHHHCSEEEE
T ss_pred eeEEEEECCCCCCHHHHHHHHHhCcCccccCCccceEE-EEEEEEC-CEEEEEEEEECCCchhhhHHHHHhhccCCEEEE
Confidence 47897 9999999 555554 445667778887554 4666777 6654 9999999999999999999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCCCCCCCHHHHHHHHhhhC
Q psy15036 114 IFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQRCREVVTPDQIMFGSTQS 177 (179)
Q Consensus 114 vyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~~r~Vs~~e~~~~a~~~~ 177 (179)
|||++++++|+.+..|+..+.+..... ..|+++|+||+|+.+ +.++.+++++++++.+
T Consensus 81 v~d~~~~~~~~~~~~~~~~i~~~~~~~-----~~p~iiv~nK~Dl~~-~~~~~~~~~~~~~~~~ 138 (166)
T 2ce2_X 81 VFAINNTKSFEDIHQYREQIKRVKDSD-----DVPMVLVGNKSDLAA-RTVESRQAQDLARSYG 138 (166)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHHTCS-----CCCEEEEEECTTCSC-CCSCHHHHHHHHHHHT
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCC-----CCcEEEEEEchhhhh-cccCHHHHHHHHHHcC
Confidence 999999999999999999998876531 168899999999977 7889999999988764
No 86
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=99.83 E-value=9.2e-20 Score=136.70 Aligned_cols=123 Identities=14% Similarity=0.102 Sum_probs=100.0
Q ss_pred ceeeEEE-EeCCCCc---eeEeeec-c-CCCcccCcceeeeeEEEEEecCCCee--eeCCCchhchhhhhhhhcCCcEEE
Q psy15036 41 SFNFGTQ-LGRRGIP---LLKHLKY-L-GTGTHGKTVGIVFPAISVTYSIGPRY--FRFPLVSRFLSLTTGLYRGTMGFL 112 (179)
Q Consensus 41 ~~~~Kiv-lG~~gvG---~~~~~~~-~-~~~~~~~Ti~~~~~~k~v~~~~~~~i--wDt~G~e~~~~~~~~~~~~~~~vi 112 (179)
...+||+ +|+.||| ++..+.. . +...+.+|++ +..+.+.++ +..+ |||+|++++..++..+++++|++|
T Consensus 19 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~t~~--~~~~~~~~~-~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii 95 (190)
T 2h57_A 19 SKEVHVLCLGLDNSGKTTIINKLKPSNAQSQNILPTIG--FSIEKFKSS-SLSFTVFDMSGQGRYRNLWEHYYKEGQAII 95 (190)
T ss_dssp --CEEEEEEECTTSSHHHHHHHTSCGGGCCSSCCCCSS--EEEEEEECS-SCEEEEEEECCSTTTGGGGGGGGGGCSEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCCCCCcCCccc--eeEEEEEEC-CEEEEEEECCCCHHHHHHHHHHHhcCCEEE
Confidence 3579997 9999999 6666653 3 4667888988 445677788 7777 999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHHHhC---CccCccccceEEEEeeCCCcCCCCCCCHHHHHHHHh
Q psy15036 113 LIFDVTNENSFKDVEKWLLQIKVMDG---ALFTHFELQIVFMRGCLELLQRCREVVTPDQIMFGS 174 (179)
Q Consensus 113 lvyDit~~~Sf~~l~~w~~~i~~~~~---~~~~~~~~~~iilvGnK~Dl~~~r~Vs~~e~~~~a~ 174 (179)
+|||+++++||+.+..|+..+.+... .+ .|+++|+||+|+.+ .++.++..+++.
T Consensus 96 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~------~piilv~nK~Dl~~--~~~~~~~~~~~~ 152 (190)
T 2h57_A 96 FVIDSSDRLRMVVAKEELDTLLNHPDIKHRR------IPILFFANKMDLRD--AVTSVKVSQLLC 152 (190)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHSTTTTTSC------CCEEEEEECTTSTT--CCCHHHHHHHHT
T ss_pred EEEECCCHHHHHHHHHHHHHHHhChhhccCC------CeEEEEEeCcCccc--CCCHHHHHHHhC
Confidence 99999999999999999999876543 23 68899999999975 566777777663
No 87
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.83 E-value=5.2e-20 Score=138.39 Aligned_cols=130 Identities=17% Similarity=0.141 Sum_probs=105.9
Q ss_pred ceeeEEE-EeCCCCc---eeEeee-ccCCCcccCcceeeeeEEEEEecCCCee----eeCCCchhchhhhhhhhcCCcEE
Q psy15036 41 SFNFGTQ-LGRRGIP---LLKHLK-YLGTGTHGKTVGIVFPAISVTYSIGPRY----FRFPLVSRFLSLTTGLYRGTMGF 111 (179)
Q Consensus 41 ~~~~Kiv-lG~~gvG---~~~~~~-~~~~~~~~~Ti~~~~~~k~v~~~~~~~i----wDt~G~e~~~~~~~~~~~~~~~v 111 (179)
...+||+ +|+.+|| ++..+. ..+...+.+|++..+. ..+.++ +..+ |||+|+++|..+...+++.+|++
T Consensus 6 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~-~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 83 (199)
T 2gf0_A 6 SNDYRVVVFGAGGVGKSSLVLRFVKGTFRDTYIPTIEDTYR-QVISCD-KSVCTLQITDTTGSHQFPAMQRLSISKGHAF 83 (199)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHSCCCCTTSCCCCEEEE-EEEEET-TEEEEEEEEECCGGGSCHHHHHHHHHHCSEE
T ss_pred CCeeEEEEECCCCCcHHHHHHHHHcCCCCCcccCcccccee-EEEEEC-CEEEEEEEEeCCChHHhHHHHHHhhccCCEE
Confidence 3468997 9999999 666655 5566778889886654 455566 5543 99999999999999999999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCCCCCCCHHHHHHHHhhhC
Q psy15036 112 LLIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQRCREVVTPDQIMFGSTQS 177 (179)
Q Consensus 112 ilvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~~r~Vs~~e~~~~a~~~~ 177 (179)
++|||++++++|+.+..|+..+.+..... +..|+++||||+|+.+ +.++.+++.+++++.+
T Consensus 84 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~----~~~piilv~nK~Dl~~-~~~~~~~~~~~~~~~~ 144 (199)
T 2gf0_A 84 ILVFSVTSKQSLEELGPIYKLIVQIKGSV----EDIPVMLVGNKCDETQ-REVDTREAQAVAQEWK 144 (199)
T ss_dssp EEEEETTCHHHHHTTHHHHHHHHHHHSCG----GGSCEEEEEECTTCSS-CSSCHHHHHHHHHHHT
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHHhcCC----CCCCEEEEEECccCCc-cccCHHHHHHHHHHhC
Confidence 99999999999999999998888765421 1168899999999975 7899999999988754
No 88
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=99.83 E-value=9.9e-20 Score=136.24 Aligned_cols=128 Identities=19% Similarity=0.197 Sum_probs=95.7
Q ss_pred eeeEEE-EeCCCCc---eeEeee-ccCCCcccCcceeeeeEEEEEecCCCee----eeCCCchhchhhhhhhhcCCcEEE
Q psy15036 42 FNFGTQ-LGRRGIP---LLKHLK-YLGTGTHGKTVGIVFPAISVTYSIGPRY----FRFPLVSRFLSLTTGLYRGTMGFL 112 (179)
Q Consensus 42 ~~~Kiv-lG~~gvG---~~~~~~-~~~~~~~~~Ti~~~~~~k~v~~~~~~~i----wDt~G~e~~~~~~~~~~~~~~~vi 112 (179)
..+||+ +|+.||| ++..+. ..+...+.+|.+..+ .+.+.++ +..+ ||++|++++..+...+++.+++++
T Consensus 20 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~-~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 97 (190)
T 3con_A 20 TEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSY-RKQVVID-GETCLLDILDTAGQEEYSAMRDQYMRTGEGFL 97 (190)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEET-TEEEEEEEEECCC-----------CTTCSEEE
T ss_pred ceeEEEEECcCCCCHHHHHHHHHcCCCccccCCccceEE-EEEEEEC-CEEEEEEEEECCChHHHHHHHHHhhCcCCEEE
Confidence 368997 9999999 555555 446667778887655 3566777 6653 999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCCCCCCCHHHHHHHHhhhC
Q psy15036 113 LIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQRCREVVTPDQIMFGSTQS 177 (179)
Q Consensus 113 lvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~~r~Vs~~e~~~~a~~~~ 177 (179)
+|||++++++|+.+..|+..+....... ..|+++|+||+|+.+ +.++.+++++++++.+
T Consensus 98 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~-----~~p~ilv~nK~Dl~~-~~~~~~~~~~~~~~~~ 156 (190)
T 3con_A 98 CVFAINNSKSFADINLYREQIKRVKDSD-----DVPMVLVGNKCDLPT-RTVDTKQAHELAKSYG 156 (190)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHHTCS-----CCCEEEEEECTTCSC-CCSCHHHHHHHHHHHT
T ss_pred EEEECcCHHHHHHHHHHHHHHHHHhCCC-----CCeEEEEEECCcCCc-ccCCHHHHHHHHHHcC
Confidence 9999999999999999999998876521 168899999999976 7899999999998754
No 89
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=99.82 E-value=5.9e-20 Score=137.29 Aligned_cols=112 Identities=15% Similarity=0.113 Sum_probs=92.3
Q ss_pred eeeEEE-EeCCCCc---eeEeeeccCCCcccCcceeeeeEEEEEecCCCee--eeCCCchhchhhhhhhhcCCcEEEEEE
Q psy15036 42 FNFGTQ-LGRRGIP---LLKHLKYLGTGTHGKTVGIVFPAISVTYSIGPRY--FRFPLVSRFLSLTTGLYRGTMGFLLIF 115 (179)
Q Consensus 42 ~~~Kiv-lG~~gvG---~~~~~~~~~~~~~~~Ti~~~~~~k~v~~~~~~~i--wDt~G~e~~~~~~~~~~~~~~~vilvy 115 (179)
..+||+ +|++||| +++++.......+.||+|.. .+.+.++ +..+ ||++|+++++.++..|++++|++++||
T Consensus 15 ~~~ki~ivG~~~vGKSsL~~~l~~~~~~~~~~t~g~~--~~~~~~~-~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~ 91 (181)
T 1fzq_A 15 QEVRILLLGLDNAGKTTLLKQLASEDISHITPTQGFN--IKSVQSQ-GFKLNVWDIGGQRKIRPYWRSYFENTDILIYVI 91 (181)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHCCSCCEEEEEETTEE--EEEEEET-TEEEEEEECSSCGGGHHHHHHHHTTCSEEEEEE
T ss_pred CceEEEEECCCCCCHHHHHHHHhcCCCCcccCcCCeE--EEEEEEC-CEEEEEEECCCCHHHHHHHHHHhCCCCEEEEEE
Confidence 468997 9999999 66666655556678898843 4567777 7666 999999999999999999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHHHh-CCccCccccceEEEEeeCCCcCCCC
Q psy15036 116 DVTNENSFKDVEKWLLQIKVMD-GALFTHFELQIVFMRGCLELLQRCR 162 (179)
Q Consensus 116 Dit~~~Sf~~l~~w~~~i~~~~-~~~~~~~~~~~iilvGnK~Dl~~~r 162 (179)
|+++++||+++..|+.++.+.. ..+ .|+++||||+|+.+.+
T Consensus 92 d~~~~~s~~~~~~~~~~~~~~~~~~~------~piilv~NK~Dl~~~~ 133 (181)
T 1fzq_A 92 DSADRKRFEETGQELTELLEEEKLSC------VPVLIFANKQDLLTAA 133 (181)
T ss_dssp ETTCGGGHHHHHHHHHHHTTCGGGTT------CCEEEEEECTTSTTCC
T ss_pred ECcCHHHHHHHHHHHHHHHhChhhcC------CCEEEEEECcCcccCC
Confidence 9999999999999998876532 222 6889999999997644
No 90
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=99.82 E-value=1.2e-19 Score=132.27 Aligned_cols=108 Identities=15% Similarity=0.187 Sum_probs=87.8
Q ss_pred eEEE-EeCCCCc---eeEeee-ccCCCcccCcceeeeeEEEEEecCCCee--eeCCCchhchhhhhhhhcCCcEEEEEEe
Q psy15036 44 FGTQ-LGRRGIP---LLKHLK-YLGTGTHGKTVGIVFPAISVTYSIGPRY--FRFPLVSRFLSLTTGLYRGTMGFLLIFD 116 (179)
Q Consensus 44 ~Kiv-lG~~gvG---~~~~~~-~~~~~~~~~Ti~~~~~~k~v~~~~~~~i--wDt~G~e~~~~~~~~~~~~~~~vilvyD 116 (179)
+||+ +|+.||| ++..+. ..+ ..+.||++. ..+.+... +..+ ||++|++++..++..+++++|++++|||
T Consensus 1 ~ki~~~G~~~~GKssl~~~l~~~~~-~~~~~t~~~--~~~~~~~~-~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d 76 (164)
T 1r8s_A 1 MRILMVGLDAAGKTTILYKLKLGEI-VTTIPTIGF--NVETVEYK-NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVD 76 (164)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHCS-SCCCCCSSC--CEEEEECS-SCEEEEEECCCCGGGHHHHHHHTTTCSEEEEEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCc-CcccCcCce--eEEEEEEC-CEEEEEEEcCCChhhHHHHHHHhccCCEEEEEEE
Confidence 5887 9999999 666665 334 346788884 34566666 6666 9999999999999999999999999999
Q ss_pred CCChhhHHHHHHHHHHHHHHh-CCccCccccceEEEEeeCCCcCCC
Q psy15036 117 VTNENSFKDVEKWLLQIKVMD-GALFTHFELQIVFMRGCLELLQRC 161 (179)
Q Consensus 117 it~~~Sf~~l~~w~~~i~~~~-~~~~~~~~~~~iilvGnK~Dl~~~ 161 (179)
+++++||+++..|+..+.+.. ..+ .|+++||||+|+.+.
T Consensus 77 ~~~~~s~~~~~~~~~~~~~~~~~~~------~piilv~nK~Dl~~~ 116 (164)
T 1r8s_A 77 SNDRERVNEAREELMRMLAEDELRD------AVLLVFANKQDLPNA 116 (164)
T ss_dssp TTCGGGHHHHHHHHHHHHTCGGGTT------CEEEEEEECTTSTTC
T ss_pred CCCHHHHHHHHHHHHHHHhchhhcC------CeEEEEEECcCCcCC
Confidence 999999999999999887542 222 689999999999763
No 91
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=99.81 E-value=1.6e-19 Score=135.70 Aligned_cols=120 Identities=9% Similarity=0.036 Sum_probs=89.4
Q ss_pred cCceeeEEE-EeCCCCc---eeEeee-ccCCC-cccCcceeeeeEEEEEecCCCee--eeCCCchhchhhhhhhhcCCcE
Q psy15036 39 EFSFNFGTQ-LGRRGIP---LLKHLK-YLGTG-THGKTVGIVFPAISVTYSIGPRY--FRFPLVSRFLSLTTGLYRGTMG 110 (179)
Q Consensus 39 ~~~~~~Kiv-lG~~gvG---~~~~~~-~~~~~-~~~~Ti~~~~~~k~v~~~~~~~i--wDt~G~e~~~~~~~~~~~~~~~ 110 (179)
......||+ +|+.+|| ++.++. ..+.. .+.+|++... ..+... +..+ |||+|+++|..++..|++++|+
T Consensus 13 ~~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~~t~~~~~--~~~~~~-~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ 89 (199)
T 4bas_A 13 QSKTKLQVVMCGLDNSGKTTIINQVKPAQSSSKHITATVGYNV--ETFEKG-RVAFTVFDMGGAKKFRGLWETYYDNIDA 89 (199)
T ss_dssp ---CEEEEEEECCTTSCHHHHHHHHSCCC----CCCCCSSEEE--EEEEET-TEEEEEEEECCSGGGGGGGGGGCTTCSE
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHhcCCCcccccccccceeE--EEEEeC-CEEEEEEECCCCHhHHHHHHHHHhcCCE
Confidence 445689997 9999999 666655 45556 6789998543 445555 5555 9999999999999999999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHHHhCCc--cCccccceEEEEeeCCCcCCC
Q psy15036 111 FLLIFDVTNENSFKDVEKWLLQIKVMDGAL--FTHFELQIVFMRGCLELLQRC 161 (179)
Q Consensus 111 vilvyDit~~~Sf~~l~~w~~~i~~~~~~~--~~~~~~~~iilvGnK~Dl~~~ 161 (179)
+|+|||+++++||+++..|+..+.+..... .+.....|++|||||+|+.+.
T Consensus 90 ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~ 142 (199)
T 4bas_A 90 VIFVVDSSDHLRLCVVKSEIQAMLKHEDIRRELPGGGRVPFLFFANKMDAAGA 142 (199)
T ss_dssp EEEEEETTCGGGHHHHHHHHHHHHTSHHHHSBCTTSCBCCEEEEEECTTSTTC
T ss_pred EEEEEECCcHHHHHHHHHHHHHHHhChhhhhcccccCCCCEEEEEECcCCCCC
Confidence 999999999999999999999887642210 000001689999999999765
No 92
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.81 E-value=1.6e-19 Score=135.10 Aligned_cols=120 Identities=10% Similarity=0.079 Sum_probs=92.7
Q ss_pred eeeEEE-EeCCCCc---eeEeee-ccCCCcccCcceeeeeEEEEEecCCCee--eeCCCchhchhhhhhhhcCCcEEEEE
Q psy15036 42 FNFGTQ-LGRRGIP---LLKHLK-YLGTGTHGKTVGIVFPAISVTYSIGPRY--FRFPLVSRFLSLTTGLYRGTMGFLLI 114 (179)
Q Consensus 42 ~~~Kiv-lG~~gvG---~~~~~~-~~~~~~~~~Ti~~~~~~k~v~~~~~~~i--wDt~G~e~~~~~~~~~~~~~~~vilv 114 (179)
..+||+ +|+.+|| ++.++. ..+. .+.||++.. .+.+.++ +..+ |||+|++++..++..+++++|++|+|
T Consensus 15 ~~~~i~v~G~~~~GKssl~~~l~~~~~~-~~~~t~~~~--~~~~~~~-~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v 90 (187)
T 1zj6_A 15 QEHKVIIVGLDNAGKTTILYQFSMNEVV-HTSPTIGSN--VEEIVIN-NTRFLMWDIGGQESLRSSWNTYYTNTEFVIVV 90 (187)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHHTTSCE-EEECCSCSS--CEEEEET-TEEEEEEECCC----CGGGHHHHTTCCEEEEE
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCCC-cCcCCCccc--eEEEEEC-CEEEEEEECCCCHhHHHHHHHHhcCCCEEEEE
Confidence 368997 9999999 666666 4444 778898844 4566777 7666 99999999999999999999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHHHhC-CccCccccceEEEEeeCCCcCCCCCCCHHHHHHHH
Q psy15036 115 FDVTNENSFKDVEKWLLQIKVMDG-ALFTHFELQIVFMRGCLELLQRCREVVTPDQIMFG 173 (179)
Q Consensus 115 yDit~~~Sf~~l~~w~~~i~~~~~-~~~~~~~~~~iilvGnK~Dl~~~r~Vs~~e~~~~a 173 (179)
||+++++||+++..|+.++.+... .+ .|+++||||+|+.+ .++.++..+..
T Consensus 91 ~d~~~~~s~~~~~~~~~~~~~~~~~~~------~piilv~NK~Dl~~--~~~~~~i~~~~ 142 (187)
T 1zj6_A 91 VDSTDRERISVTREELYKMLAHEDLRK------AGLLIFANKQDVKE--CMTVAEISQFL 142 (187)
T ss_dssp EETTCTTTHHHHHHHHHHHHTSGGGTT------CEEEEEEECTTSTT--CCCHHHHHHHH
T ss_pred EeCCCHHHHHHHHHHHHHHHhchhhCC------CeEEEEEECCCCcC--CCCHHHHHHHh
Confidence 999999999999999999886531 22 68999999999975 45566655543
No 93
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=99.81 E-value=4e-19 Score=132.49 Aligned_cols=118 Identities=14% Similarity=0.134 Sum_probs=95.1
Q ss_pred eeeEEE-EeCCCCc---eeEeeeccCCCcccCcceeeeeEEEEEecCCCee--eeCCCchhchhhhhhhhcCCcEEEEEE
Q psy15036 42 FNFGTQ-LGRRGIP---LLKHLKYLGTGTHGKTVGIVFPAISVTYSIGPRY--FRFPLVSRFLSLTTGLYRGTMGFLLIF 115 (179)
Q Consensus 42 ~~~Kiv-lG~~gvG---~~~~~~~~~~~~~~~Ti~~~~~~k~v~~~~~~~i--wDt~G~e~~~~~~~~~~~~~~~vilvy 115 (179)
..+||+ +|+.||| ++.++.......+.||++.. .+.+.++ +..+ |||+|++++..++..+++++|++++||
T Consensus 17 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~~~~--~~~~~~~-~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v~ 93 (186)
T 1ksh_A 17 RELRLLMLGLDNAGKTTILKKFNGEDVDTISPTLGFN--IKTLEHR-GFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVV 93 (186)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHTTCCCSSCCCCSSEE--EEEEEET-TEEEEEEEECCSHHHHTTGGGGCTTCSEEEEEE
T ss_pred CeeEEEEECCCCCCHHHHHHHHhcCCCCcccccCccc--eEEEEEC-CEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEE
Confidence 468997 9999999 66666644367788998844 4566677 7766 999999999999999999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHHHhC-CccCccccceEEEEeeCCCcCCCCCCCHHHHH
Q psy15036 116 DVTNENSFKDVEKWLLQIKVMDG-ALFTHFELQIVFMRGCLELLQRCREVVTPDQI 170 (179)
Q Consensus 116 Dit~~~Sf~~l~~w~~~i~~~~~-~~~~~~~~~~iilvGnK~Dl~~~r~Vs~~e~~ 170 (179)
|+++++||+++..|+.++.+... .+ .|+++|+||+|+.+.+ ..++..
T Consensus 94 d~~~~~s~~~~~~~~~~~~~~~~~~~------~piilv~nK~Dl~~~~--~~~~~~ 141 (186)
T 1ksh_A 94 DSADRQRMQDCQRELQSLLVEERLAG------ATLLIFANKQDLPGAL--SCNAIQ 141 (186)
T ss_dssp ETTCGGGHHHHHHHHHHHHTCGGGTT------CEEEEEEECTTSTTCC--CHHHHH
T ss_pred ECcCHHHHHHHHHHHHHHHhChhcCC------CcEEEEEeCccCCCCC--CHHHHH
Confidence 99999999999999988876522 22 6899999999997643 344443
No 94
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=99.80 E-value=7.7e-20 Score=134.03 Aligned_cols=111 Identities=14% Similarity=0.159 Sum_probs=90.6
Q ss_pred eeeEEE-EeCCCCc---eeEeeeccCCCcccCcceeeeeEEEEEecCCCee--eeCCCchhchhhhhhhhcCCcEEEEEE
Q psy15036 42 FNFGTQ-LGRRGIP---LLKHLKYLGTGTHGKTVGIVFPAISVTYSIGPRY--FRFPLVSRFLSLTTGLYRGTMGFLLIF 115 (179)
Q Consensus 42 ~~~Kiv-lG~~gvG---~~~~~~~~~~~~~~~Ti~~~~~~k~v~~~~~~~i--wDt~G~e~~~~~~~~~~~~~~~vilvy 115 (179)
..+||+ +|+.||| ++..+.......+.||++.. .+.+.++ +..+ |||+|++++..++..+++++|++++||
T Consensus 6 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~~~~--~~~~~~~-~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v~ 82 (171)
T 1upt_A 6 REMRILILGLDGAGKTTILYRLQVGEVVTTIPTIGFN--VETVTYK-NLKFQVWDLGGLTSIRPYWRCYYSNTDAVIYVV 82 (171)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHSSCCCCCCCSSEE--EEEEEET-TEEEEEEEECCCGGGGGGGGGGCTTCSEEEEEE
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCCCCcCCcCccc--eEEEEEC-CEEEEEEECCCChhhhHHHHHHhccCCEEEEEE
Confidence 468997 9999999 66666533334578888754 3566777 6666 999999999999999999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHHHhC-CccCccccceEEEEeeCCCcCCC
Q psy15036 116 DVTNENSFKDVEKWLLQIKVMDG-ALFTHFELQIVFMRGCLELLQRC 161 (179)
Q Consensus 116 Dit~~~Sf~~l~~w~~~i~~~~~-~~~~~~~~~~iilvGnK~Dl~~~ 161 (179)
|+++++||+.+..|+..+.+... .+ .|+++|+||+|+.+.
T Consensus 83 d~~~~~s~~~~~~~~~~~~~~~~~~~------~piilv~nK~Dl~~~ 123 (171)
T 1upt_A 83 DSCDRDRIGISKSELVAMLEEEELRK------AILVVFANKQDMEQA 123 (171)
T ss_dssp ETTCCTTHHHHHHHHHHHHTCGGGTT------CEEEEEEECTTSTTC
T ss_pred ECCCHHHHHHHHHHHHHHHhchhhCC------CEEEEEEECCCCcCC
Confidence 99999999999999988875432 22 689999999999764
No 95
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=99.80 E-value=2.3e-19 Score=133.69 Aligned_cols=122 Identities=11% Similarity=0.070 Sum_probs=95.7
Q ss_pred CceeeEEE-EeCCCCc---eeEeeeccCCCcccCcceeeeeEEEEEecCCCee--eeCCCchhchhhhhhhhcCCcEEEE
Q psy15036 40 FSFNFGTQ-LGRRGIP---LLKHLKYLGTGTHGKTVGIVFPAISVTYSIGPRY--FRFPLVSRFLSLTTGLYRGTMGFLL 113 (179)
Q Consensus 40 ~~~~~Kiv-lG~~gvG---~~~~~~~~~~~~~~~Ti~~~~~~k~v~~~~~~~i--wDt~G~e~~~~~~~~~~~~~~~vil 113 (179)
....+||+ +|+.+|| ++.++.......+.+|+|... +.+.++ +..+ ||++|++++..+...+++++|++++
T Consensus 18 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~t~~~~~--~~~~~~-~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~ 94 (181)
T 2h17_A 18 GSQEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNV--EEIVIN-NTRFLMWDIGGQESLRSSWNTYYTNTEFVIV 94 (181)
T ss_dssp ---CEEEEEEEETTSSHHHHHHHHHTTSCEEEECCSSSSC--EEEEET-TEEEEEEEESSSGGGTCGGGGGGTTCCEEEE
T ss_pred CCceeEEEEECCCCCCHHHHHHHHhcCCCCccCCcCceee--EEEEEC-CEEEEEEECCCCHhHHHHHHHHhccCCEEEE
Confidence 33579997 9999999 666665433367788888554 566677 7666 9999999999999999999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHHHh-CCccCccccceEEEEeeCCCcCCCCCCCHHHHHHH
Q psy15036 114 IFDVTNENSFKDVEKWLLQIKVMD-GALFTHFELQIVFMRGCLELLQRCREVVTPDQIMF 172 (179)
Q Consensus 114 vyDit~~~Sf~~l~~w~~~i~~~~-~~~~~~~~~~~iilvGnK~Dl~~~r~Vs~~e~~~~ 172 (179)
|||+++++||+++..|+..+.+.. ..+ .|+++||||+|+.+ .++.++..+.
T Consensus 95 v~D~~~~~s~~~~~~~~~~~~~~~~~~~------~piilv~NK~Dl~~--~~~~~~i~~~ 146 (181)
T 2h17_A 95 VVDSTDRERISVTREELYKMLAHEDLRK------AGLLIFANKQDVKE--CMTVAEISQF 146 (181)
T ss_dssp EEETTCTTTHHHHHHHHHHHHTCGGGTT------CEEEEEEECTTSTT--CCCHHHHHHH
T ss_pred EEECCCHHHHHHHHHHHHHHHhChhhCC------CeEEEEEECCCccc--CCCHHHHHHH
Confidence 999999999999999998887643 222 68999999999976 4455555544
No 96
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=99.80 E-value=2.8e-19 Score=144.59 Aligned_cols=128 Identities=17% Similarity=0.175 Sum_probs=107.7
Q ss_pred ceeeEEE-EeCCCCc---eeEeee-ccCCCcccCcceeeeeEEEEEecCCCee----eeCCCchhchhhhhhhhcCCcEE
Q psy15036 41 SFNFGTQ-LGRRGIP---LLKHLK-YLGTGTHGKTVGIVFPAISVTYSIGPRY----FRFPLVSRFLSLTTGLYRGTMGF 111 (179)
Q Consensus 41 ~~~~Kiv-lG~~gvG---~~~~~~-~~~~~~~~~Ti~~~~~~k~v~~~~~~~i----wDt~G~e~~~~~~~~~~~~~~~v 111 (179)
...+||+ +|+.||| ++.++. ..+...+.+|++..+ .+.+.++ +..+ |||+|+++|..+...+++++|++
T Consensus 153 ~~~~~i~i~G~~~~GKssli~~~~~~~~~~~~~~t~~~~~-~~~~~~~-~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 230 (332)
T 2wkq_A 153 KELIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVD-GKPVNLGLWDTAGLEDYDRLRPLSYPQTDVF 230 (332)
T ss_dssp TTCEEEEEEESTTSSHHHHHHHHHHSCCCCSCCCCSEEEE-EEEEEET-TEEEEEEEEEECCCGGGTTTGGGGCTTCSEE
T ss_pred cceeEEEEECCCCCChHHHHHHHHhCCCCcccCCccccee-EEEEEEC-CEEEEEEEEeCCCchhhhHHHHHhccCCCEE
Confidence 3468997 9999999 555554 556778888988655 4667777 7665 99999999999999999999999
Q ss_pred EEEEeCCChhhHHHHH-HHHHHHHHHhCCccCccccceEEEEeeCCCcCCC------------CCCCHHHHHHHHhhhC
Q psy15036 112 LLIFDVTNENSFKDVE-KWLLQIKVMDGALFTHFELQIVFMRGCLELLQRC------------REVVTPDQIMFGSTQS 177 (179)
Q Consensus 112 ilvyDit~~~Sf~~l~-~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~~------------r~Vs~~e~~~~a~~~~ 177 (179)
++|||+++++||+++. .|+..+....+. .|+++||||+|+.+. |.++.+++.+++++..
T Consensus 231 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~-------~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 302 (332)
T 2wkq_A 231 LICFSLVSPASFHHVRAKWYPEVRHHCPN-------TPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIG 302 (332)
T ss_dssp EEEEETTCHHHHHHHHHTHHHHHHHHCTT-------SCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTT
T ss_pred EEEEeCCCHHHHHHHHHHHHHHHHhhCCC-------CcEEEEEEchhcccccchhhhccccccccccHHHHHHHHHHcC
Confidence 9999999999999996 899999877653 688999999999653 7899999999998764
No 97
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=99.79 E-value=9e-19 Score=131.30 Aligned_cols=110 Identities=14% Similarity=0.076 Sum_probs=91.3
Q ss_pred eeeEEE-EeCCCCc---eeEeee-ccCCCcccCcceeeeeEEEEEecCCCee--eeCCCchhchhhhhhhhcCCcEEEEE
Q psy15036 42 FNFGTQ-LGRRGIP---LLKHLK-YLGTGTHGKTVGIVFPAISVTYSIGPRY--FRFPLVSRFLSLTTGLYRGTMGFLLI 114 (179)
Q Consensus 42 ~~~Kiv-lG~~gvG---~~~~~~-~~~~~~~~~Ti~~~~~~k~v~~~~~~~i--wDt~G~e~~~~~~~~~~~~~~~vilv 114 (179)
..+||+ +|+.+|| ++..+. ..+...+.||++.++. .+... +..+ ||++|+++|..++..+++++|++|+|
T Consensus 21 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~--~~~~~-~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v 97 (188)
T 1zd9_A 21 EEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMR--KITKG-NVTIKLWDIGGQPRFRSMWERYCRGVSAIVYM 97 (188)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEE--EEEET-TEEEEEEEECCSHHHHTTHHHHHTTCSEEEEE
T ss_pred CccEEEEECCCCCCHHHHHHHHHcCCCCCccCCCCceeEE--EEEeC-CEEEEEEECCCCHhHHHHHHHHHccCCEEEEE
Confidence 468997 9999999 666665 5566778899997764 35555 5555 99999999999999999999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHHHhC-CccCccccceEEEEeeCCCcCC
Q psy15036 115 FDVTNENSFKDVEKWLLQIKVMDG-ALFTHFELQIVFMRGCLELLQR 160 (179)
Q Consensus 115 yDit~~~Sf~~l~~w~~~i~~~~~-~~~~~~~~~~iilvGnK~Dl~~ 160 (179)
||+++++||+.+..|+..+.+... .+ .|++|||||+|+.+
T Consensus 98 ~D~~~~~s~~~~~~~~~~~~~~~~~~~------~piilv~NK~Dl~~ 138 (188)
T 1zd9_A 98 VDAADQEKIEASKNELHNLLDKPQLQG------IPVLVLGNKRDLPG 138 (188)
T ss_dssp EETTCGGGHHHHHHHHHHHHTCGGGTT------CCEEEEEECTTSTT
T ss_pred EECCCHHHHHHHHHHHHHHHhCcccCC------CCEEEEEECCCCcc
Confidence 999999999999999988876422 22 68899999999976
No 98
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=99.79 E-value=3.1e-19 Score=144.63 Aligned_cols=127 Identities=15% Similarity=0.129 Sum_probs=99.3
Q ss_pred eeEEE-EeCCCCc---eeEeeecc---C-CCcccCcceeeeeEEEEEecCCCee--eeCCCchhc-----hhhhhhhhcC
Q psy15036 43 NFGTQ-LGRRGIP---LLKHLKYL---G-TGTHGKTVGIVFPAISVTYSIGPRY--FRFPLVSRF-----LSLTTGLYRG 107 (179)
Q Consensus 43 ~~Kiv-lG~~gvG---~~~~~~~~---~-~~~~~~Ti~~~~~~k~v~~~~~~~i--wDt~G~e~~-----~~~~~~~~~~ 107 (179)
.+||+ +|++||| ++..+... + ...+.+|++..+. .+.++++..+ ||++|+++| ..++..++++
T Consensus 3 ~~KI~lvG~~~vGKSSLi~~l~~~~~~~~~~~~~~Ti~~~~~--~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~ 80 (307)
T 3r7w_A 3 GSKLLLMGRSGSGKSSMRSIIFSNYSAFDTRRLGATIDVEHS--HLRFLGNMTLNLWDCGGQDVFMENYFTKQKDHIFQM 80 (307)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHSCCCTGGGGGCCCCCSEEEE--EEEETTTEEEEEEEECCSHHHHHHHHTTTHHHHHTT
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCccccCcCCccceEEE--EEEeCCceEEEEEECCCcHHHhhhhhhhHHHHHhcc
Confidence 58997 9999999 55554422 1 2367789987775 3445413344 999999999 7889999999
Q ss_pred CcEEEEEEeCCChhhHHHHHHHHHHHHHHh--CCccCccccceEEEEeeCCCcCC--CCC----CCHHHHHHHHhhhC
Q psy15036 108 TMGFLLIFDVTNENSFKDVEKWLLQIKVMD--GALFTHFELQIVFMRGCLELLQR--CRE----VVTPDQIMFGSTQS 177 (179)
Q Consensus 108 ~~~vilvyDit~~~Sf~~l~~w~~~i~~~~--~~~~~~~~~~~iilvGnK~Dl~~--~r~----Vs~~e~~~~a~~~~ 177 (179)
+|++|+|||+++++||+++..|...+.+.. ..+ .|++|||||+|+.+ +|. +..+++.+++++.+
T Consensus 81 ad~vi~V~D~t~~~s~~~l~~~~~~l~~l~~~~~~------~piilv~NK~Dl~~~~~r~~~~~v~~~~~~~~~~~~g 152 (307)
T 3r7w_A 81 VQVLIHVFDVESTEVLKDIEIFAKALKQLRKYSPD------AKIFVLLHKMDLVQLDKREELFQIMMKNLSETSSEFG 152 (307)
T ss_dssp CSEEEEEEETTCSCHHHHHHHHHHHHHHHHHHCTT------CEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred CCEEEEEEECCChhhHHHHHHHHHHHHHHHHhCCC------CeEEEEEecccccchhhhhHHHHHHHHHHHHHHHHcC
Confidence 999999999999999999988866655432 222 68999999999987 676 88899999998875
No 99
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=99.79 E-value=5.9e-19 Score=133.08 Aligned_cols=111 Identities=14% Similarity=0.169 Sum_probs=84.2
Q ss_pred eeeEEE-EeCCCCc---eeEeeeccCCCcccCcceeeeeEEEEEecCCCee--eeCCCchhchhhhhhhhcCCcEEEEEE
Q psy15036 42 FNFGTQ-LGRRGIP---LLKHLKYLGTGTHGKTVGIVFPAISVTYSIGPRY--FRFPLVSRFLSLTTGLYRGTMGFLLIF 115 (179)
Q Consensus 42 ~~~Kiv-lG~~gvG---~~~~~~~~~~~~~~~Ti~~~~~~k~v~~~~~~~i--wDt~G~e~~~~~~~~~~~~~~~vilvy 115 (179)
..+||+ +|+.||| ++.++.......+.||++. ..+.+... +..+ ||++|+++|..++..+++++|++++||
T Consensus 28 ~~~ki~v~G~~~vGKSsLi~~l~~~~~~~~~~t~~~--~~~~~~~~-~~~~~i~Dt~G~~~~~~~~~~~~~~~d~iilv~ 104 (192)
T 2b6h_A 28 KQMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGF--NVETVEYK-NICFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV 104 (192)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHCSSCCEEEEEETTE--EEEEEEET-TEEEEEEECC-----CTTHHHHHHTCCEEEEEE
T ss_pred CccEEEEECCCCCCHHHHHHHHHhCCccccCCcCce--eEEEEEEC-CEEEEEEECCCCHhHHHHHHHHhccCCEEEEEE
Confidence 368997 9999999 6666553322356788873 34566666 6666 999999999999999999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHHHhC-CccCccccceEEEEeeCCCcCCC
Q psy15036 116 DVTNENSFKDVEKWLLQIKVMDG-ALFTHFELQIVFMRGCLELLQRC 161 (179)
Q Consensus 116 Dit~~~Sf~~l~~w~~~i~~~~~-~~~~~~~~~~iilvGnK~Dl~~~ 161 (179)
|+++++||+.+..|+..+.+... .+ .|++|||||+|+.+.
T Consensus 105 D~~~~~s~~~~~~~l~~~~~~~~~~~------~piilv~NK~Dl~~~ 145 (192)
T 2b6h_A 105 DSNDRERVQESADELQKMLQEDELRD------AVLLVFANKQDMPNA 145 (192)
T ss_dssp ETTCGGGHHHHHHHHHHHHTCGGGTT------CEEEEEEECTTSTTC
T ss_pred ECCCHHHHHHHHHHHHHHhcccccCC------CeEEEEEECCCCCCC
Confidence 99999999999999998875432 22 689999999999763
No 100
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=99.66 E-value=8.4e-21 Score=144.05 Aligned_cols=127 Identities=17% Similarity=0.191 Sum_probs=103.6
Q ss_pred eeeEEE-EeCCCCc---eeEeee-ccCCCcccCcceeeeeEEEEEecCCCee----eeCCCchhchhhhhhhhcCCcEEE
Q psy15036 42 FNFGTQ-LGRRGIP---LLKHLK-YLGTGTHGKTVGIVFPAISVTYSIGPRY----FRFPLVSRFLSLTTGLYRGTMGFL 112 (179)
Q Consensus 42 ~~~Kiv-lG~~gvG---~~~~~~-~~~~~~~~~Ti~~~~~~k~v~~~~~~~i----wDt~G~e~~~~~~~~~~~~~~~vi 112 (179)
..+||+ +|+.||| ++..+. ..+...+.+|++..+ ...+.++ +..+ |||+|+++|..+...+++++|+++
T Consensus 29 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~-~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii 106 (204)
T 3th5_A 29 QAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVD-GKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFL 106 (204)
Confidence 468997 9999999 665555 556677788887555 4555666 5554 999999999999999999999999
Q ss_pred EEEeCCChhhHHHHH-HHHHHHHHHhCCccCccccceEEEEeeCCCcCCCC------------CCCHHHHHHHHhhhC
Q psy15036 113 LIFDVTNENSFKDVE-KWLLQIKVMDGALFTHFELQIVFMRGCLELLQRCR------------EVVTPDQIMFGSTQS 177 (179)
Q Consensus 113 lvyDit~~~Sf~~l~-~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~~r------------~Vs~~e~~~~a~~~~ 177 (179)
+|||+++++||+++. .|+..+....+. .|+++||||+|+.+.+ .++.+++.+++++.+
T Consensus 107 lv~D~~~~~s~~~~~~~~~~~l~~~~~~-------~piilv~NK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 177 (204)
T 3th5_A 107 ICFSLVSPASFENVRAKWYPEVRHHCPN-------TPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIG 177 (204)
Confidence 999999999999996 899988876543 6889999999997643 778888888887654
No 101
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.78 E-value=6.1e-19 Score=130.84 Aligned_cols=120 Identities=13% Similarity=0.101 Sum_probs=90.8
Q ss_pred eeeEEE-EeCCCCc---eeEeeeccCCCcccCcceeeeeEEEEEecCCCee--eeCCCchhchhhhhhhhcCCcEEEEEE
Q psy15036 42 FNFGTQ-LGRRGIP---LLKHLKYLGTGTHGKTVGIVFPAISVTYSIGPRY--FRFPLVSRFLSLTTGLYRGTMGFLLIF 115 (179)
Q Consensus 42 ~~~Kiv-lG~~gvG---~~~~~~~~~~~~~~~Ti~~~~~~k~v~~~~~~~i--wDt~G~e~~~~~~~~~~~~~~~vilvy 115 (179)
..+||+ +|+.||| ++.++.......+.||++.. .+.+.++ +..+ ||++|++++..++..+++++|++++||
T Consensus 17 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~--~~~~~~~-~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~ 93 (183)
T 1moz_A 17 KELRILILGLDGAGKTTILYRLQIGEVVTTKPTIGFN--VETLSYK-NLKLNVWDLGGQTSIRPYWRCYYADTAAVIFVV 93 (183)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTCCSEEEEECSSTTCC--EEEEEET-TEEEEEEEEC----CCTTGGGTTTTEEEEEEEE
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCcCccCCcCccc--eEEEEEC-CEEEEEEECCCCHhHHHHHHHHhccCCEEEEEE
Confidence 478997 9999999 55555522226678888844 4566777 7666 999999999999999999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHHHh-CCccCccccceEEEEeeCCCcCCCCCCCHHHHHHH
Q psy15036 116 DVTNENSFKDVEKWLLQIKVMD-GALFTHFELQIVFMRGCLELLQRCREVVTPDQIMF 172 (179)
Q Consensus 116 Dit~~~Sf~~l~~w~~~i~~~~-~~~~~~~~~~~iilvGnK~Dl~~~r~Vs~~e~~~~ 172 (179)
|+++++||+.+..|+..+.+.. ..+ .|+++|+||+|+.+ ..+.++..+.
T Consensus 94 d~~~~~s~~~~~~~~~~~~~~~~~~~------~piilv~nK~Dl~~--~~~~~~i~~~ 143 (183)
T 1moz_A 94 DSTDKDRMSTASKELHLMLQEEELQD------AALLVFANKQDQPG--ALSASEVSKE 143 (183)
T ss_dssp ETTCTTTHHHHHHHHHHHTTSSTTSS------CEEEEEEECTTSTT--CCCHHHHHHH
T ss_pred ECCCHHHHHHHHHHHHHHHcChhhCC------CeEEEEEECCCCCC--CCCHHHHHHH
Confidence 9999999999999998887653 222 68999999999976 3455555443
No 102
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=99.78 E-value=9.2e-19 Score=130.95 Aligned_cols=111 Identities=14% Similarity=0.120 Sum_probs=89.6
Q ss_pred eeeEEE-EeCCCCc---eeEeeeccCCCcccCcceeeeeEEEEEecCCCee--eeCCCchhchhhhhhhhcCCcEEEEEE
Q psy15036 42 FNFGTQ-LGRRGIP---LLKHLKYLGTGTHGKTVGIVFPAISVTYSIGPRY--FRFPLVSRFLSLTTGLYRGTMGFLLIF 115 (179)
Q Consensus 42 ~~~Kiv-lG~~gvG---~~~~~~~~~~~~~~~Ti~~~~~~k~v~~~~~~~i--wDt~G~e~~~~~~~~~~~~~~~vilvy 115 (179)
..+||+ +|+.+|| ++..+.......+.||++.. .+.+.++ +..+ |||+|++++..+...+++++|++++||
T Consensus 21 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~--~~~~~~~-~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v~ 97 (189)
T 2x77_A 21 RKIRVLMLGLDNAGKTSILYRLHLGDVVTTVPTVGVN--LETLQYK-NISFEVWDLGGQTGVRPYWRCYFSDTDAVIYVV 97 (189)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTCCSCCEEECSSTTCC--EEEEEET-TEEEEEEEECCSSSSCCCCSSSSTTCCEEEEEE
T ss_pred CceEEEEECCCCCCHHHHHHHHHcCCCCCcCCCCceE--EEEEEEC-CEEEEEEECCCCHhHHHHHHHHhhcCCEEEEEE
Confidence 468997 9999999 55555533234577888843 4566677 6666 999999999999999999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHHHhC-CccCccccceEEEEeeCCCcCCC
Q psy15036 116 DVTNENSFKDVEKWLLQIKVMDG-ALFTHFELQIVFMRGCLELLQRC 161 (179)
Q Consensus 116 Dit~~~Sf~~l~~w~~~i~~~~~-~~~~~~~~~~iilvGnK~Dl~~~ 161 (179)
|+++++||+.+..|+..+.+... .+ .|+++|+||+|+.+.
T Consensus 98 d~~~~~s~~~~~~~~~~~~~~~~~~~------~piilv~nK~Dl~~~ 138 (189)
T 2x77_A 98 DSTDRDRMGVAKHELYALLDEDELRK------SLLLIFANKQDLPDA 138 (189)
T ss_dssp ETTCCTTHHHHHHHHHHHHTCSTTTT------CEEEEEEECTTSTTC
T ss_pred eCCCHHHHHHHHHHHHHHHhhhhcCC------CeEEEEEECCCCcCC
Confidence 99999999999999988876432 22 689999999999764
No 103
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=99.76 E-value=4e-20 Score=146.07 Aligned_cols=128 Identities=17% Similarity=0.103 Sum_probs=95.0
Q ss_pred cCceeeEEE-EeCC---------CCc---eeEeeec----cCCCcccCcc-eeeeeEEEEE--------------ecCCC
Q psy15036 39 EFSFNFGTQ-LGRR---------GIP---LLKHLKY----LGTGTHGKTV-GIVFPAISVT--------------YSIGP 86 (179)
Q Consensus 39 ~~~~~~Kiv-lG~~---------gvG---~~~~~~~----~~~~~~~~Ti-~~~~~~k~v~--------------~~~~~ 86 (179)
.....+||+ +|++ +|| ++.++.. .+...+.||+ +.++..+.+. ++ +.
T Consensus 15 ~~~~~~ki~lvG~~~~~~~~~~~~vGKSsLi~~l~~~~~~~~~~~~~~t~~~~~~~~~~i~~~~~~~~~~~~~~~~~-~~ 93 (255)
T 3c5h_A 15 YFQGTYNISVVGLSGTEKEKGQCGIGKSCLCNRFVRPSADEFHLDHTSVLSTSDFGGRVVNNDHFLYWGEVSRSLED-CV 93 (255)
T ss_dssp SCCSCEEEEEEESCCCTTTTTTCCCSHHHHHHHHHCCSTTTCCSCCCCEECHHHHTSTTTTTCSEEEEEEEC--------
T ss_pred CCCceeEEEEECCCccccccCCCCcCHHHHHHHHHhccCCccccccCCcccccccceeEeecccccccccccccccC-Cc
Confidence 455689998 9999 999 6666553 3556677775 5555433322 23 34
Q ss_pred ee----ee-----------------------CCCchhchhhhhhhhc---------------------CCcEEEEEEeCC
Q psy15036 87 RY----FR-----------------------FPLVSRFLSLTTGLYR---------------------GTMGFLLIFDVT 118 (179)
Q Consensus 87 ~i----wD-----------------------t~G~e~~~~~~~~~~~---------------------~~~~vilvyDit 118 (179)
.+ || ++|+++|..++..||+ ++|++|+|||++
T Consensus 94 ~~~l~i~D~~~~~D~~~~~~~~~~~~~~~~~~~g~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vilV~D~t 173 (255)
T 3c5h_A 94 ECKMHIVEQTEFIDDQTFQPHRSTALQPYIKRAAATKLASAEKLMYFCTDQLGLEQDFEQKQMPDGKLLVDGFLLGIDVS 173 (255)
T ss_dssp --CEEEEEECCCEETTTCSBTTGGGCCCHHHHHTCSEEECTTCBCCCCGGGTTCGGGSCCCBCGGGEEECCEEEEEEECB
T ss_pred EEEEEEEEccccccccccccccccccccccccchhhhhhhhhhhhhhccccccccccccccccccccccCCEEEEEEECC
Confidence 33 99 8899999999999998 899999999999
Q ss_pred Ch--hhHHHHHHHHHHHHHH-hCCccCccccceEEEEeeCCCcCCCCCCCHHHHHHHHhh
Q psy15036 119 NE--NSFKDVEKWLLQIKVM-DGALFTHFELQIVFMRGCLELLQRCREVVTPDQIMFGST 175 (179)
Q Consensus 119 ~~--~Sf~~l~~w~~~i~~~-~~~~~~~~~~~~iilvGnK~Dl~~~r~Vs~~e~~~~a~~ 175 (179)
++ +||+++..|+.++.+. ...+ .|++|||||+||.++|.+ +++++++++
T Consensus 174 ~~~~~s~~~~~~~l~~i~~~~~~~~------~piilV~NK~Dl~~~~~v--~~~~~~~~~ 225 (255)
T 3c5h_A 174 RGMNRNFDDQLKFVSNLYNQLAKTK------KPIVVVLTKCDEGVERYI--RDAHTFALS 225 (255)
T ss_dssp C----CHHHHHHHHHHHHHHHHHTT------CCEEEEEECGGGBCHHHH--HHHHHHHHT
T ss_pred CCchhhHHHHHHHHHHHHHHhccCC------CCEEEEEEcccccccHHH--HHHHHHHHh
Confidence 99 9999999999999876 3233 688999999999877776 688888865
No 104
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.73 E-value=3.3e-17 Score=140.33 Aligned_cols=111 Identities=20% Similarity=0.235 Sum_probs=91.7
Q ss_pred ceeeEEE-EeCCCCc---eeEeeeccCCCcccCcceeeeeEEEEEecCCCee--eeCCCchhchhhhhhhhcCCcEEEEE
Q psy15036 41 SFNFGTQ-LGRRGIP---LLKHLKYLGTGTHGKTVGIVFPAISVTYSIGPRY--FRFPLVSRFLSLTTGLYRGTMGFLLI 114 (179)
Q Consensus 41 ~~~~Kiv-lG~~gvG---~~~~~~~~~~~~~~~Ti~~~~~~k~v~~~~~~~i--wDt~G~e~~~~~~~~~~~~~~~vilv 114 (179)
...+||+ +|+++|| ++..+.......+.||++..+ ..+.+. +..+ |||+|+++|..++..+++++|++|+|
T Consensus 320 ~~~~ki~lvG~~nvGKSsLl~~l~~~~~~~~~~T~~~~~--~~~~~~-~~~~~l~Dt~G~~~~~~~~~~~~~~ad~~i~V 396 (497)
T 3lvq_E 320 NKEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNV--ETVTYK-NVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFV 396 (497)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHSSCCCCCCCSSEEE--EEEESS-SCEEEEEEECCCGGGSGGGGGGGTTCCEEEEE
T ss_pred ccceeEEEEcCCCCCHHHHHHHHhcCCCCCcCCccceeE--EEEEeC-CEEEEEEECCCcHHHHHHHHHHhccCCEEEEE
Confidence 4578997 9999999 666666443455678988665 356667 7777 99999999999999999999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHHHhC-CccCccccceEEEEeeCCCcCC
Q psy15036 115 FDVTNENSFKDVEKWLLQIKVMDG-ALFTHFELQIVFMRGCLELLQR 160 (179)
Q Consensus 115 yDit~~~Sf~~l~~w~~~i~~~~~-~~~~~~~~~~iilvGnK~Dl~~ 160 (179)
||++++++|+.+..|+.++.+... .+ .|++|||||+||.+
T Consensus 397 ~D~~~~~s~~~~~~~~~~~~~~~~~~~------~p~ilv~NK~Dl~~ 437 (497)
T 3lvq_E 397 VDCADRDRIDEARQELHRIINDREMRD------AIILIFANKQDLPD 437 (497)
T ss_dssp EETTCGGGHHHHHHHHHHHHTSGGGTT------CEEEEEEECCSSSS
T ss_pred EECcchhHHHHHHHHHHHHhhhhhcCC------CcEEEEEECCCCCc
Confidence 999999999999999998876432 22 68999999999976
No 105
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.72 E-value=6.2e-18 Score=129.25 Aligned_cols=122 Identities=12% Similarity=0.114 Sum_probs=93.3
Q ss_pred CceeeEEE-EeCCCCc---eeEeeec-cCCC---cccCcceeeeeEEEEEecCCCee--eeCCCchhchhhhhhhhcC--
Q psy15036 40 FSFNFGTQ-LGRRGIP---LLKHLKY-LGTG---THGKTVGIVFPAISVTYSIGPRY--FRFPLVSRFLSLTTGLYRG-- 107 (179)
Q Consensus 40 ~~~~~Kiv-lG~~gvG---~~~~~~~-~~~~---~~~~Ti~~~~~~k~v~~~~~~~i--wDt~G~e~~~~~~~~~~~~-- 107 (179)
....+||+ +|+.||| ++..+.. .+.. .+.+|++.++ . +..+ ||++|+++++.....|++.
T Consensus 9 ~~~~~~i~~~G~~g~GKTsl~~~l~~~~~~~~~~~~~~~~~~~~-------~-~~~~~l~Dt~G~~~~~~~~~~~~~~~~ 80 (218)
T 1nrj_B 9 KSYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAADY-------D-GSGVTLVDFPGHVKLRYKLSDYLKTRA 80 (218)
T ss_dssp -CCCCEEEEECSTTSSHHHHHHHHHHSSCCCBCCCSSCEEETTG-------G-GSSCEEEECCCCGGGTHHHHHHHHHHG
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHhcCCCCCeeeecCceEEEEe-------e-CceEEEEECCCcHHHHHHHHHHHHhcc
Confidence 34578997 9999999 5555553 2222 3556665443 3 3334 9999999999999999988
Q ss_pred --CcEEEEEEeCC-ChhhHHHHHHHHHHHHHHh----CCccCccccceEEEEeeCCCcCCCCCCC------HHHHHHHHh
Q psy15036 108 --TMGFLLIFDVT-NENSFKDVEKWLLQIKVMD----GALFTHFELQIVFMRGCLELLQRCREVV------TPDQIMFGS 174 (179)
Q Consensus 108 --~~~vilvyDit-~~~Sf~~l~~w~~~i~~~~----~~~~~~~~~~~iilvGnK~Dl~~~r~Vs------~~e~~~~a~ 174 (179)
++++|+|||++ ++++|..+..|+.++.... ..+ .|+++|+||+|+.+.+.++ .+++..++.
T Consensus 81 ~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~p~ilv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~ 154 (218)
T 1nrj_B 81 KFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENG------IDILIACNKSELFTARPPSKIKDALESEIQKVIE 154 (218)
T ss_dssp GGEEEEEEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTC------CCEEEEEECTTSTTCCCHHHHHHHHHHHHHHHHH
T ss_pred ccCCEEEEEEECCCChHHHHHHHHHHHHHHhcccccccCC------CCEEEEEEchHhcccCCHHHHHHHHHHHHHHHHH
Confidence 89999999999 9999999999999887653 233 6899999999998877766 566777765
Q ss_pred h
Q psy15036 175 T 175 (179)
Q Consensus 175 ~ 175 (179)
+
T Consensus 155 ~ 155 (218)
T 1nrj_B 155 R 155 (218)
T ss_dssp H
T ss_pred H
Confidence 4
No 106
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=99.71 E-value=1.4e-17 Score=126.88 Aligned_cols=112 Identities=9% Similarity=-0.027 Sum_probs=80.2
Q ss_pred eeeEEE-EeCCCCc---eeEeee-ccCCCcccCcceeeeeEEEEEecCCC---ee--eeCCCchhchh-hhhhhhcCCcE
Q psy15036 42 FNFGTQ-LGRRGIP---LLKHLK-YLGTGTHGKTVGIVFPAISVTYSIGP---RY--FRFPLVSRFLS-LTTGLYRGTMG 110 (179)
Q Consensus 42 ~~~Kiv-lG~~gvG---~~~~~~-~~~~~~~~~Ti~~~~~~k~v~~~~~~---~i--wDt~G~e~~~~-~~~~~~~~~~~ 110 (179)
..+||+ +|+.||| ++.++. ..+.+.+.++ +.++. .+.++ +. .+ |||+|+++|.. +...|++++++
T Consensus 6 ~~~ki~vvG~~~~GKTsli~~l~~~~~~~~~~~~-~~~~~--~~~~~-~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ 81 (214)
T 2fh5_B 6 SQRAVLFVGLCDSGKTLLFVRLLTGQYRDTQTSI-TDSSA--IYKVN-NNRGNSLTLIDLPGHESLRFQLLDRFKSSARA 81 (214)
T ss_dssp --CEEEEECSTTSSHHHHHHHHHHSCCCCBCCCC-SCEEE--EEECS-STTCCEEEEEECCCCHHHHHHHHHHHGGGEEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcccccCCc-ceeeE--EEEec-CCCccEEEEEECCCChhHHHHHHHHHHhhCCE
Confidence 468997 9999999 666655 4466666544 44444 36666 43 23 99999999998 88999999999
Q ss_pred EEEEEeCCChh-hHHHHHH-HHHHHHHHh--CCccCccccceEEEEeeCCCcCCCCC
Q psy15036 111 FLLIFDVTNEN-SFKDVEK-WLLQIKVMD--GALFTHFELQIVFMRGCLELLQRCRE 163 (179)
Q Consensus 111 vilvyDit~~~-Sf~~l~~-w~~~i~~~~--~~~~~~~~~~~iilvGnK~Dl~~~r~ 163 (179)
+|+|||+++.+ ++..+.. |...+.... ..+ .|++|||||+||.+.+.
T Consensus 82 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~piilv~nK~Dl~~~~~ 132 (214)
T 2fh5_B 82 VVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNS------PSLLIACNKQDIAMAKS 132 (214)
T ss_dssp EEEEEETTTHHHHHHHHHHHHHHHHHHHHTSTTC------CEEEEEEECTTSTTCCC
T ss_pred EEEEEECCCcCHHHHHHHHHHHHHHhhhhhcccC------CCEEEEEECCCCCCccc
Confidence 99999999954 5776655 444444322 222 68999999999976543
No 107
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=99.70 E-value=4.4e-17 Score=133.26 Aligned_cols=112 Identities=14% Similarity=0.197 Sum_probs=82.9
Q ss_pred eeeEEE-EeCCCCc---eeEeeeccCCCcccCcceeeeeEEEEEecCCCee--eeCCCchhchhhhhhhhcCCcEEEEEE
Q psy15036 42 FNFGTQ-LGRRGIP---LLKHLKYLGTGTHGKTVGIVFPAISVTYSIGPRY--FRFPLVSRFLSLTTGLYRGTMGFLLIF 115 (179)
Q Consensus 42 ~~~Kiv-lG~~gvG---~~~~~~~~~~~~~~~Ti~~~~~~k~v~~~~~~~i--wDt~G~e~~~~~~~~~~~~~~~vilvy 115 (179)
..+||+ +|+.+|| ++.++.........||++..+. .+... +..+ |||+|+++|..+...+++.+|++|+||
T Consensus 164 ~~~kI~ivG~~~vGKSsLl~~l~~~~~~~~~pT~~~~~~--~~~~~-~~~l~i~Dt~G~~~~~~~~~~~~~~ad~vilV~ 240 (329)
T 3o47_A 164 KEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVE--TVEYK-NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV 240 (329)
T ss_dssp CSEEEEEEESTTSSHHHHHHHTCSSCCEEEEEETTEEEE--EEEET-TEEEEEEECC-----CCSHHHHHTTEEEEEEEE
T ss_pred CcceEEEECCCCccHHHHHHHHhCCCCCCcccccceEEE--EEecC-cEEEEEEECCCCHhHHHHHHHHhccCCEEEEEE
Confidence 357997 9999999 5655553322334578886653 45556 6566 999999999999999999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHHHhC-CccCccccceEEEEeeCCCcCCCC
Q psy15036 116 DVTNENSFKDVEKWLLQIKVMDG-ALFTHFELQIVFMRGCLELLQRCR 162 (179)
Q Consensus 116 Dit~~~Sf~~l~~w~~~i~~~~~-~~~~~~~~~~iilvGnK~Dl~~~r 162 (179)
|+++++||+.+..|+..+.+... .+ .|++|||||+|+.+.+
T Consensus 241 D~~~~~s~~~~~~~~~~~~~~~~~~~------~piilV~NK~Dl~~~~ 282 (329)
T 3o47_A 241 DSNDRERVNEAREELMRMLAEDELRD------AVLLVFANKQDLPNAM 282 (329)
T ss_dssp ETTCSSSHHHHHHHHHHHHTCGGGTT------CEEEEEEECTTSTTCC
T ss_pred ECCchHHHHHHHHHHHHHHhhhccCC------CeEEEEEECccCCccc
Confidence 99999999999988887765432 22 6899999999997643
No 108
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=99.69 E-value=3.5e-17 Score=120.27 Aligned_cols=121 Identities=12% Similarity=0.035 Sum_probs=86.2
Q ss_pred eeEEE-EeCCCCc---eeEeeec-cCCCcccCcceeeeeEEEEEecCCCee--eeCCCchhch------hhhhhhhc--C
Q psy15036 43 NFGTQ-LGRRGIP---LLKHLKY-LGTGTHGKTVGIVFPAISVTYSIGPRY--FRFPLVSRFL------SLTTGLYR--G 107 (179)
Q Consensus 43 ~~Kiv-lG~~gvG---~~~~~~~-~~~~~~~~Ti~~~~~~k~v~~~~~~~i--wDt~G~e~~~------~~~~~~~~--~ 107 (179)
.+||+ +|++||| +++.+.+ .+...+.|+.+.+.....+.++ +..+ |||+|+++|. .+...|++ +
T Consensus 3 ~~~v~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~-~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~ 81 (165)
T 2wji_A 3 SYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYN-GEKFKVVDLPGVYSLTANSIDEIIARDYIINEK 81 (165)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHCCSSSCC-----CCCCCEEEEEET-TEEEEEEECCCCSCSSSSSHHHHHHHHHHHHHC
T ss_pred ccEEEEECCCCCCHHHHHHHHhCCCeeccCCCCcceeeeEEEEEEC-CcEEEEEECCCcccCCCcchhHHHHHHHHhcCC
Confidence 47887 9999999 6666553 3333445665556666677777 7666 9999999885 45577886 8
Q ss_pred CcEEEEEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCCCCCCCHHHHHHHHhhhC
Q psy15036 108 TMGFLLIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQRCREVVTPDQIMFGSTQS 177 (179)
Q Consensus 108 ~~~vilvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~~r~Vs~~e~~~~a~~~~ 177 (179)
++++++|||.++.++ ...|+.++.+. + .|+++||||+|+.+.+.++. ++.+++++.+
T Consensus 82 ~~~~i~v~D~~~~~~---~~~~~~~~~~~---~------~p~ilv~nK~Dl~~~~~~~~-~~~~~~~~~~ 138 (165)
T 2wji_A 82 PDLVVNIVDATALER---NLYLTLQLMEM---G------ANLLLALNKMDLAKSLGIEI-DVDKLEKILG 138 (165)
T ss_dssp CSEEEEEEETTCHHH---HHHHHHHHHHT---T------CCEEEEEECHHHHHHTTCCC-CHHHHHHHHT
T ss_pred CCEEEEEecCCchhH---hHHHHHHHHhc---C------CCEEEEEEchHhccccChhh-HHHHHHHHhC
Confidence 999999999998654 45688777652 2 57899999999987777764 5777777653
No 109
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=99.66 E-value=8.7e-17 Score=139.12 Aligned_cols=127 Identities=12% Similarity=0.043 Sum_probs=93.6
Q ss_pred ceeeEEE-EeCCCCc---eeEeee-ccCCCcccCcceeeeeEEE------EEecC---CCee--eeCCCchhchhhhhhh
Q psy15036 41 SFNFGTQ-LGRRGIP---LLKHLK-YLGTGTHGKTVGIVFPAIS------VTYSI---GPRY--FRFPLVSRFLSLTTGL 104 (179)
Q Consensus 41 ~~~~Kiv-lG~~gvG---~~~~~~-~~~~~~~~~Ti~~~~~~k~------v~~~~---~~~i--wDt~G~e~~~~~~~~~ 104 (179)
...+||+ +|+++|| ++..+. ..+...+.+|+|.++..+. +.++. +..+ ||++|++.|..+...|
T Consensus 39 ~~~~kV~lvG~~~vGKSSLl~~l~~~~~~~~~~~t~g~~~~~~~~~~~~~v~~~~~~~~~~~~i~Dt~G~e~~~~~~~~~ 118 (535)
T 3dpu_A 39 LQEIKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLENDDELKECLFHFWDFGGQEIMHASHQFF 118 (535)
T ss_dssp CCEEEEEEESSSCSSHHHHHHHHHC-----------CCCEEEEEGGGSGGGTTCSTTTTCEEEEECCCSCCTTTTTCHHH
T ss_pred ccceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEeccccccceeecCCCceEEEEEEECCcHHHHHHHHHHH
Confidence 4579997 9999999 555555 4566788899998876542 22220 1233 9999999999999999
Q ss_pred hcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCCCCCCCHHHHHHHHhhhC
Q psy15036 105 YRGTMGFLLIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQRCREVVTPDQIMFGSTQS 177 (179)
Q Consensus 105 ~~~~~~vilvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~~r~Vs~~e~~~~a~~~~ 177 (179)
+++++++|+|||+++. +.+..|+.++....+. .|+++||||+|+.+.+.++.+++++++...+
T Consensus 119 l~~~d~ii~V~D~s~~---~~~~~~~~~l~~~~~~-------~pvilV~NK~Dl~~~~~v~~~~~~~~~~~~~ 181 (535)
T 3dpu_A 119 MTRSSVYMLLLDSRTD---SNKHYWLRHIEKYGGK-------SPVIVVMNKIDENPSYNIEQKKINERFPAIE 181 (535)
T ss_dssp HHSSEEEEEEECGGGG---GGHHHHHHHHHHHSSS-------CCEEEEECCTTTCTTCCCCHHHHHHHCGGGT
T ss_pred ccCCcEEEEEEeCCCc---hhHHHHHHHHHHhCCC-------CCEEEEEECCCcccccccCHHHHHHHHHhcC
Confidence 9999999999999765 5667899999988754 5889999999999889999999998887654
No 110
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=99.65 E-value=2.1e-16 Score=116.42 Aligned_cols=105 Identities=11% Similarity=0.014 Sum_probs=80.9
Q ss_pred eeeEEE-EeCCCCc---eeEeee-ccCCCcccCcceeeeeEEEEEecCCCee--eeCCCchhchhhhhhhhcCCcEEEEE
Q psy15036 42 FNFGTQ-LGRRGIP---LLKHLK-YLGTGTHGKTVGIVFPAISVTYSIGPRY--FRFPLVSRFLSLTTGLYRGTMGFLLI 114 (179)
Q Consensus 42 ~~~Kiv-lG~~gvG---~~~~~~-~~~~~~~~~Ti~~~~~~k~v~~~~~~~i--wDt~G~e~~~~~~~~~~~~~~~vilv 114 (179)
..+||+ +|+.||| ++..+. ..+...+.++++.++..+.+.++ +..+ |||+|+++|..+...+++.+|++++|
T Consensus 7 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v 85 (178)
T 2lkc_A 7 RPPVVTIMGHVDHGKTTLLDAIRHSKVTEQEAGGITQHIGAYQVTVN-DKKITFLDTPGHEAFTTMRARGAQVTDIVILV 85 (178)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHTTCSSCSSCCSSSTTCCCCEEEET-TEEEEESCCCSSSSSSCSCCSSCCCCCEEEEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCccccCCCCceeEeeeEEEEEeC-CceEEEEECCCCHHHHHHHHHHHhhCCEEEEE
Confidence 478997 9999999 555555 44556666776666666677788 7777 99999999999999999999999999
Q ss_pred EeCCC---hhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCC
Q psy15036 115 FDVTN---ENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQR 160 (179)
Q Consensus 115 yDit~---~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~ 160 (179)
||+++ +++++.+. .....+ .|+++|+||+|+.+
T Consensus 86 ~d~~~~~~~~~~~~l~-------~~~~~~------~p~ilv~nK~Dl~~ 121 (178)
T 2lkc_A 86 VAADDGVMPQTVEAIN-------HAKAAN------VPIIVAINKMDKPE 121 (178)
T ss_dssp EETTCCCCHHHHHHHH-------HHGGGS------CCEEEEEETTTSSC
T ss_pred EECCCCCcHHHHHHHH-------HHHhCC------CCEEEEEECccCCc
Confidence 99998 55554432 222223 58899999999975
No 111
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=99.65 E-value=2.8e-16 Score=117.57 Aligned_cols=110 Identities=14% Similarity=0.153 Sum_probs=79.4
Q ss_pred ceeeEEE-EeCCCCc---eeEeeecc-CCC---cccCcceeeeeEEEEEecCCCee--eeCCCchhchhhhhhhhcC---
Q psy15036 41 SFNFGTQ-LGRRGIP---LLKHLKYL-GTG---THGKTVGIVFPAISVTYSIGPRY--FRFPLVSRFLSLTTGLYRG--- 107 (179)
Q Consensus 41 ~~~~Kiv-lG~~gvG---~~~~~~~~-~~~---~~~~Ti~~~~~~k~v~~~~~~~i--wDt~G~e~~~~~~~~~~~~--- 107 (179)
...+||+ +|+.||| ++..+... +.. .+.++++.++ . +..+ |||+|++.+......+++.
T Consensus 46 ~~~~~i~vvG~~g~GKSsll~~l~~~~~~~~~~~~~~~~~~~~-------~-~~~~~l~Dt~G~~~~~~~~~~~~~~~~~ 117 (193)
T 2ged_A 46 SYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAADY-------D-GSGVTLVDFPGHVKLRYKLSDYLKTRAK 117 (193)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHSSCC------------CC-------C-CTTCSEEEETTCCBSSCCHHHHHHHHGG
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCCCcccccCCCceeeee-------c-CCeEEEEECCCCchHHHHHHHHHHhhcc
Confidence 4578997 9999999 55555532 222 2334443222 3 3444 9999999998888888887
Q ss_pred -CcEEEEEEeCC-ChhhHHHHHHHHHHHHHHhC----CccCccccceEEEEeeCCCcCCCCCC
Q psy15036 108 -TMGFLLIFDVT-NENSFKDVEKWLLQIKVMDG----ALFTHFELQIVFMRGCLELLQRCREV 164 (179)
Q Consensus 108 -~~~vilvyDit-~~~Sf~~l~~w~~~i~~~~~----~~~~~~~~~~iilvGnK~Dl~~~r~V 164 (179)
+|++|+|||++ ++++|..+..|+..+..... .. .|+++|+||+|+.+.+.+
T Consensus 118 ~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~p~ilv~nK~Dl~~~~~~ 174 (193)
T 2ged_A 118 FVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENG------IDILIACNKSELFTARPP 174 (193)
T ss_dssp GEEEEEEEEETTCCHHHHHHHHHHHHHHHHHHHHHSTTC------CCEEEEEECTTSTTCCCH
T ss_pred cCCEEEEEEECCCCchhHHHHHHHHHHHHhhhhhccccC------CCEEEEEEchHhcCCCCH
Confidence 89999999999 99999999999988875532 23 689999999999876655
No 112
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=99.64 E-value=3.9e-16 Score=126.17 Aligned_cols=108 Identities=15% Similarity=-0.022 Sum_probs=84.4
Q ss_pred eeEeeeccCC-CcccCcceeeeeEEEEEecCCCee-eeCCCchhchhhhhhhhcCCcEEEEEEeCCChh-hHHHHHHHHH
Q psy15036 55 LLKHLKYLGT-GTHGKTVGIVFPAISVTYSIGPRY-FRFPLVSRFLSLTTGLYRGTMGFLLIFDVTNEN-SFKDVEKWLL 131 (179)
Q Consensus 55 ~~~~~~~~~~-~~~~~Ti~~~~~~k~v~~~~~~~i-wDt~G~e~~~~~~~~~~~~~~~vilvyDit~~~-Sf~~l~~w~~ 131 (179)
+.++..+.|. +.+.||+|..+. ..+..+ +... ||+ |++|+.+++.||+++|++|+|||+++++ ||+.+..|+.
T Consensus 34 ~~~~~~~~f~~~~~~pTiGd~~~-~~~~~~-~~~~iwD~--qer~~~l~~~~~~~ad~vilV~D~~~~~~s~~~l~~~l~ 109 (301)
T 1u0l_A 34 ILCKLRGKFRLQNLKIYVGDRVE-YTPDET-GSGVIENV--LHRKNLLTKPHVANVDQVILVVTVKMPETSTYIIDKFLV 109 (301)
T ss_dssp EEEEECGGGTTTTCCCCTTCEEE-EECCCS-SSEEEEEE--CCCSCEETTTTEESCCEEEEEECSSTTCCCHHHHHHHHH
T ss_pred EEEEEcccccccCCCCCCccEEE-EEEcCC-CeEEEEEE--ccccceeeccccccCCEEEEEEeCCCCCCCHHHHHHHHH
Confidence 4444457788 899999995543 333333 4333 999 9999999999999999999999999998 7999999999
Q ss_pred HHHHHhCCccCccccceEEEEeeCCCcCCCCCCCHHHHHHHHhhhC
Q psy15036 132 QIKVMDGALFTHFELQIVFMRGCLELLQRCREVVTPDQIMFGSTQS 177 (179)
Q Consensus 132 ~i~~~~~~~~~~~~~~~iilvGnK~Dl~~~r~Vs~~e~~~~a~~~~ 177 (179)
.++. . + .|++|||||+||.+++++ ++++++++...
T Consensus 110 ~~~~--~-~------~piilv~NK~DL~~~~~v--~~~~~~~~~~~ 144 (301)
T 1u0l_A 110 LAEK--N-E------LETVMVINKMDLYDEDDL--RKVRELEEIYS 144 (301)
T ss_dssp HHHH--T-T------CEEEEEECCGGGCCHHHH--HHHHHHHHHHT
T ss_pred HHHH--C-C------CCEEEEEeHHHcCCchhH--HHHHHHHHHHh
Confidence 8765 2 2 588999999999876655 56777776643
No 113
>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*
Probab=99.63 E-value=4.1e-16 Score=130.56 Aligned_cols=92 Identities=8% Similarity=-0.044 Sum_probs=74.6
Q ss_pred CCCcccCc-----------ceeeeeEEEEEecCCCee--eeCCCchhchhhhhhhhcCCcEEEEEEeCCC----------
Q psy15036 63 GTGTHGKT-----------VGIVFPAISVTYSIGPRY--FRFPLVSRFLSLTTGLYRGTMGFLLIFDVTN---------- 119 (179)
Q Consensus 63 ~~~~~~~T-----------i~~~~~~k~v~~~~~~~i--wDt~G~e~~~~~~~~~~~~~~~vilvyDit~---------- 119 (179)
+.++|.|| +|+++ +.+.++ +..+ |||+||++|+.++..||++++++|+|||+++
T Consensus 186 ~~~~Y~PT~~Dil~~r~~TiGi~~--~~~~~~-~v~l~iwDtaGQe~~r~~w~~yf~~a~~iIfV~dis~ydq~l~ed~~ 262 (402)
T 1azs_C 186 KQDDYVPSDQDLLRCRVLTSGIFE--TKFQVD-KVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQ 262 (402)
T ss_dssp TCTTCCCCHHHHHHCCCCCCSEEE--EEEEET-TEEEEEEEECCSGGGGGGGGGGTTTCCEEEEEEETTGGGCBCTTTSC
T ss_pred hccccCCccccccccccceeeeEE--EEeecC-CccceecccchhhhhhhhhHhhccCCCEEEEEEECcccccccccccc
Confidence 45667765 45443 456667 6555 9999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHHHh-CCccCccccceEEEEeeCCCcCCCCC
Q psy15036 120 ENSFKDVEKWLLQIKVMD-GALFTHFELQIVFMRGCLELLQRCRE 163 (179)
Q Consensus 120 ~~Sf~~l~~w~~~i~~~~-~~~~~~~~~~~iilvGnK~Dl~~~r~ 163 (179)
++||+++..|++.+.... ..+ .|++|||||+||.++|.
T Consensus 263 ~ns~~e~~~~~~~i~~~~~~~~------~piiLvgNK~DL~~~ki 301 (402)
T 1azs_C 263 TNRLQEALNLFKSIWNNRWLRT------ISVILFLNKQDLLAEKV 301 (402)
T ss_dssp SBHHHHHHHHHHHHHTCTTCSS------CCEEEEEECHHHHHHHH
T ss_pred cchHHHHHHHHHHHHhcccCCC------CeEEEEEEChhhhhhhh
Confidence 999999999999988653 233 68999999999966543
No 114
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=99.62 E-value=2.6e-16 Score=117.20 Aligned_cols=121 Identities=12% Similarity=0.030 Sum_probs=90.0
Q ss_pred eeEEE-EeCCCCc---eeEeeec-cCCCcccCcceeeeeEEEEEecCCCee--eeCCCchhch------hhhhhhhc--C
Q psy15036 43 NFGTQ-LGRRGIP---LLKHLKY-LGTGTHGKTVGIVFPAISVTYSIGPRY--FRFPLVSRFL------SLTTGLYR--G 107 (179)
Q Consensus 43 ~~Kiv-lG~~gvG---~~~~~~~-~~~~~~~~Ti~~~~~~k~v~~~~~~~i--wDt~G~e~~~------~~~~~~~~--~ 107 (179)
.+||+ +|+.||| ++..+.+ .+...+.|++..+.....+.++ +..+ |||+|++++. .+...|++ .
T Consensus 7 ~~~i~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~ 85 (188)
T 2wjg_A 7 SYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYN-GEKFKVVDLPGVYSLTANSIDEIIARDYIINEK 85 (188)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEET-TEEEEEEECCCCSCCSSSSHHHHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCccccCCCCeeccceEEEEEeC-CcEEEEEECCCcCccccccHHHHHHHHHHhccC
Confidence 58897 9999999 5555553 2333445666666666777777 7666 9999999885 45677776 4
Q ss_pred CcEEEEEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCCCCCCCHHHHHHHHhhhC
Q psy15036 108 TMGFLLIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQRCREVVTPDQIMFGSTQS 177 (179)
Q Consensus 108 ~~~vilvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~~r~Vs~~e~~~~a~~~~ 177 (179)
++++++|+|.++ +++...|+.++.+ .+ +|+++|+||+|+.+.+.++ +++.+++++.+
T Consensus 86 ~~~~i~v~d~~~---~~~~~~~~~~~~~---~~------~piilv~nK~Dl~~~~~~~-~~~~~~~~~~~ 142 (188)
T 2wjg_A 86 PDLVVNIVDATA---LERNLYLTLQLME---MG------ANLLLALNKMDLAKSLGIE-IDVDKLEKILG 142 (188)
T ss_dssp CSEEEEEEEGGG---HHHHHHHHHHHHT---TT------CCEEEEEECHHHHHHTTCC-CCHHHHHHHHT
T ss_pred CCEEEEEecchh---HHHHHHHHHHHHh---cC------CCEEEEEEhhhccccccch-HHHHHHHHHhC
Confidence 999999999875 6677788888765 22 5788999999998777776 46777777654
No 115
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=99.62 E-value=2.3e-16 Score=117.36 Aligned_cols=122 Identities=8% Similarity=0.011 Sum_probs=89.7
Q ss_pred eEEE-EeCCCCc---eeEeee-ccCCCcccCcceeeeeEEEEEecCCCeeeeCCC-----------chhchhhhhhhhcC
Q psy15036 44 FGTQ-LGRRGIP---LLKHLK-YLGTGTHGKTVGIVFPAISVTYSIGPRYFRFPL-----------VSRFLSLTTGLYRG 107 (179)
Q Consensus 44 ~Kiv-lG~~gvG---~~~~~~-~~~~~~~~~Ti~~~~~~k~v~~~~~~~iwDt~G-----------~e~~~~~~~~~~~~ 107 (179)
+||+ +|+.||| ++..+. ..+...+.|++... ...+.+. .-.+|||+| ++++..+...|+++
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~t~~--~~~~~~~-~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (190)
T 2cxx_A 2 ATIIFAGRSNVGKSTLIYRLTGKKVRRGKRPGVTRK--IIEIEWK-NHKIIDMPGFGFMMGLPKEVQERIKDEIVHFIED 78 (190)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHSCCCSSSSSTTCTTS--CEEEEET-TEEEEECCCBSCCTTSCHHHHHHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhCcCCccCCCCCccce--eEEEecC-CEEEEECCCccccccCCHHHHHHHHHHHHHHHHh
Confidence 6897 9999999 555554 44555556654432 3344444 333499999 88999999999998
Q ss_pred -CcEEEEEEeCCChhhHHHH-HHHHHH--------HHH-HhCCccCccccceEEEEeeCCCcCCCCCCCHHHHHHHHhhh
Q psy15036 108 -TMGFLLIFDVTNENSFKDV-EKWLLQ--------IKV-MDGALFTHFELQIVFMRGCLELLQRCREVVTPDQIMFGSTQ 176 (179)
Q Consensus 108 -~~~vilvyDit~~~Sf~~l-~~w~~~--------i~~-~~~~~~~~~~~~~iilvGnK~Dl~~~r~Vs~~e~~~~a~~~ 176 (179)
++++++||++++.+||+++ ..|... +.+ ....+ .|+++||||+|+.+.+ .+++++++++.
T Consensus 79 ~~~~~~~v~~v~d~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~piilv~nK~Dl~~~~---~~~~~~~~~~~ 149 (190)
T 2cxx_A 79 NAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRELD------IPTIVAVNKLDKIKNV---QEVINFLAEKF 149 (190)
T ss_dssp HGGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHHTT------CCEEEEEECGGGCSCH---HHHHHHHHHHH
T ss_pred hhccCCEEEEEEcchhhhhHHHhhhccCccHHHHHHHHHHHhcC------CceEEEeehHhccCcH---HHHHHHHHHHh
Confidence 9999999999999999998 788763 222 22223 6889999999998755 67788888776
Q ss_pred C
Q psy15036 177 S 177 (179)
Q Consensus 177 ~ 177 (179)
+
T Consensus 150 ~ 150 (190)
T 2cxx_A 150 E 150 (190)
T ss_dssp T
T ss_pred h
Confidence 4
No 116
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=99.62 E-value=1.5e-15 Score=117.28 Aligned_cols=126 Identities=9% Similarity=-0.048 Sum_probs=79.5
Q ss_pred eeeEEE-EeCCCCc---eeEeeecc-CCCcccCcceeeeeEEEEEecCCCee--eeCCCc------hh----chhhhhhh
Q psy15036 42 FNFGTQ-LGRRGIP---LLKHLKYL-GTGTHGKTVGIVFPAISVTYSIGPRY--FRFPLV------SR----FLSLTTGL 104 (179)
Q Consensus 42 ~~~Kiv-lG~~gvG---~~~~~~~~-~~~~~~~Ti~~~~~~k~v~~~~~~~i--wDt~G~------e~----~~~~~~~~ 104 (179)
..+||+ +|+.||| ++..+... +.....+....+.....+..+ +..+ |||+|+ ++ +..+ ..+
T Consensus 28 ~~~kI~vvG~~~vGKSsLin~l~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~l~DtpG~~~~~~~~~~~~~~~~~-~~~ 105 (228)
T 2qu8_A 28 HKKTIILSGAPNVGKSSFMNIVSRANVDVQSYSFTTKNLYVGHFDHK-LNKYQIIDTPGLLDRAFENRNTIEMTTI-TAL 105 (228)
T ss_dssp TSEEEEEECSTTSSHHHHHHHHTTTCEEEECC-----CEEEEEEEET-TEEEEEEECTTTTTSCGGGCCHHHHHHH-HHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCcceeeeeeeeecC-CCeEEEEECCCCcCcccchhhhHHHHHH-HHh
Confidence 468997 9999999 55555422 211111211122333344455 5555 999999 54 3333 346
Q ss_pred hcCCcEEEEEEeCCChhhHHH--HHHHHHHHHHHhCCccCccccceEEEEeeCCCcCCCCCCCHH---HHHHHHhhh
Q psy15036 105 YRGTMGFLLIFDVTNENSFKD--VEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQRCREVVTP---DQIMFGSTQ 176 (179)
Q Consensus 105 ~~~~~~vilvyDit~~~Sf~~--l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~~r~Vs~~---e~~~~a~~~ 176 (179)
++.++++|+|||++++.||+. ...|+..+....+. .|+++||||+|+.+.++++.+ ++.++++..
T Consensus 106 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~l~~~~~~-------~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~ 175 (228)
T 2qu8_A 106 AHINGVILFIIDISEQCGLTIKEQINLFYSIKSVFSN-------KSIVIGFNKIDKCNMDSLSIDNKLLIKQILDNV 175 (228)
T ss_dssp HTSSEEEEEEEETTCTTSSCHHHHHHHHHHHHTCC-C-------CCEEEEEECGGGCC--CCCHHHHHHHHHHHHHC
T ss_pred hccccEEEEEEecccccCcchHHHHHHHHHHHHhhcC-------CcEEEEEeCcccCCchhhHHHHHHHHHHHHHhc
Confidence 889999999999999999863 23566665543222 688999999999888888875 456666543
No 117
>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...
Probab=99.61 E-value=9.5e-16 Score=126.55 Aligned_cols=98 Identities=12% Similarity=0.055 Sum_probs=79.1
Q ss_pred CcceeeeeEEEEEecCCCee--eeCCCchhchhhhhhhhcCCcEEEEEEeCCC----------hhhHHHHHHHHHHHHHH
Q psy15036 69 KTVGIVFPAISVTYSIGPRY--FRFPLVSRFLSLTTGLYRGTMGFLLIFDVTN----------ENSFKDVEKWLLQIKVM 136 (179)
Q Consensus 69 ~Ti~~~~~~k~v~~~~~~~i--wDt~G~e~~~~~~~~~~~~~~~vilvyDit~----------~~Sf~~l~~w~~~i~~~ 136 (179)
||+|+.. ..+.++ +..+ ||++||++|+.++..||++++++|+|||+++ .++|++...|++.+...
T Consensus 179 ~T~Gi~~--~~~~~~-~~~l~iwDt~GQe~~r~~w~~yf~~a~~iIfV~dls~~d~~l~ed~~~nr~~e~~~~~~~i~~~ 255 (353)
T 1cip_A 179 KTTGIVE--THFTFK-DLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNN 255 (353)
T ss_dssp CCCSEEE--EEEEET-TEEEEEEEECCSGGGGGGGGGGCTTCSEEEEEEEGGGGGCEETTEEEEEHHHHHHHHHHHHHTC
T ss_pred ceeceEE--EEEeeC-CeeEEEEeCCCchhhhHHHHHHHhcCCEEEEEEECccccccccccchhhhHHHHHHHHHHHHcC
Confidence 3556443 456666 6666 9999999999999999999999999999999 56799998898888764
Q ss_pred hC-CccCccccceEEEEeeCCCcCCCC---------------CCCHHHHHHHHhh
Q psy15036 137 DG-ALFTHFELQIVFMRGCLELLQRCR---------------EVVTPDQIMFGST 175 (179)
Q Consensus 137 ~~-~~~~~~~~~~iilvGnK~Dl~~~r---------------~Vs~~e~~~~a~~ 175 (179)
.. .+ .|++|+|||+||.+++ .++.+++.+|+.+
T Consensus 256 ~~~~~------~piiLv~NK~DL~~~ki~~~~l~~~fp~~~g~~~~~e~~~~~~~ 304 (353)
T 1cip_A 256 KWFTD------TSIILFLNKKDLFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQC 304 (353)
T ss_dssp GGGTT------SEEEEEEECHHHHHHHHTTSCGGGTCTTCCSCSCHHHHHHHHHH
T ss_pred ccccC------CcEEEEEECcCchhhhccccchhhcccccCCCCCHHHHHHHHHH
Confidence 21 22 6899999999996443 4889999999874
No 118
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=99.60 E-value=9.1e-16 Score=113.66 Aligned_cols=110 Identities=10% Similarity=-0.062 Sum_probs=79.3
Q ss_pred eeEEE-EeCCCCc---eeEeeeccCC--CcccCcceeeeeEEEEEecCCCee--eeCCCchhchh------h--hhhhhc
Q psy15036 43 NFGTQ-LGRRGIP---LLKHLKYLGT--GTHGKTVGIVFPAISVTYSIGPRY--FRFPLVSRFLS------L--TTGLYR 106 (179)
Q Consensus 43 ~~Kiv-lG~~gvG---~~~~~~~~~~--~~~~~Ti~~~~~~k~v~~~~~~~i--wDt~G~e~~~~------~--~~~~~~ 106 (179)
.+||+ +|++||| +++.+..... ....++...++..+.+.++ +..+ |||+|++++.. + ...+++
T Consensus 4 ~~ki~ivG~~g~GKStLl~~l~~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~ 82 (172)
T 2gj8_A 4 GMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHID-GMPLHIIDTAGLREASDEVERIGIERAWQEIE 82 (172)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSTTCCCSCEEEEEEET-TEEEEEEECCCCSCCSSHHHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCcceeeCCCCceeceeeEEEEEC-CeEEEEEECCCcccchhHHHHHHHHHHHHHHH
Confidence 47897 9999999 6666553211 1222333445666778888 7666 99999976421 1 124689
Q ss_pred CCcEEEEEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCC
Q psy15036 107 GTMGFLLIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQR 160 (179)
Q Consensus 107 ~~~~vilvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~ 160 (179)
++|++++|||++++.||+. ..|++.+.+....+ .|+++|+||+||.+
T Consensus 83 ~ad~~i~v~D~~~~~s~~~-~~~~~~~~~~~~~~------~p~ilv~NK~Dl~~ 129 (172)
T 2gj8_A 83 QADRVLFMVDGTTTDAVDP-AEIWPEFIARLPAK------LPITVVRNKADITG 129 (172)
T ss_dssp TCSEEEEEEETTTCCCCSH-HHHCHHHHHHSCTT------CCEEEEEECHHHHC
T ss_pred hCCEEEEEEECCCCCCHHH-HHHHHHHHHhcccC------CCEEEEEECccCCc
Confidence 9999999999999999874 57888887765444 68899999999954
No 119
>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}
Probab=99.59 E-value=2.4e-16 Score=130.14 Aligned_cols=99 Identities=12% Similarity=-0.008 Sum_probs=73.7
Q ss_pred EeeeccCCCcccCcceeeeeE---------EEEEecCC----Cee----eeCCCchhchhhhhhhhcCCcEEEEEEeCC-
Q psy15036 57 KHLKYLGTGTHGKTVGIVFPA---------ISVTYSIG----PRY----FRFPLVSRFLSLTTGLYRGTMGFLLIFDVT- 118 (179)
Q Consensus 57 ~~~~~~~~~~~~~Ti~~~~~~---------k~v~~~~~----~~i----wDt~G~e~~~~~~~~~~~~~~~vilvyDit- 118 (179)
..+...+.++|.||++..+.. ..+.++ + ..+ |||+||++|+.++..||++++++|+|||++
T Consensus 140 ~~~~ri~~~~Y~PT~~D~~~~r~~T~Gi~e~~f~~~-~~~~~~~v~l~iwDtaGQe~~r~~~~~y~~~~~~iI~v~dis~ 218 (354)
T 2xtz_A 140 ENLKRLSDINYIPTKEDVLYARVRTTGVVEIQFSPV-GENKKSGEVYRLFDVGGQRNERRKWIHLFEGVTAVIFCAAISE 218 (354)
T ss_dssp TSHHHHHSTTCCCCHHHHHHCCCCCCSEEEEEECCC-CE------EEEEEEECCSTTGGGGTGGGCTTEEEEEEEEEGGG
T ss_pred HHHHHHhcCCCCCCchheeeecccccceeeEEEEec-cCccccceeeEEEECCCchhhhHHHHHHhCCCCEEEEEEECcc
Confidence 334444567788877533221 123344 3 333 999999999999999999999999999999
Q ss_pred ---------ChhhHHHHHHHHHHHHHHhC-CccCccccceEEEEeeCCCcCCCC
Q psy15036 119 ---------NENSFKDVEKWLLQIKVMDG-ALFTHFELQIVFMRGCLELLQRCR 162 (179)
Q Consensus 119 ---------~~~Sf~~l~~w~~~i~~~~~-~~~~~~~~~~iilvGnK~Dl~~~r 162 (179)
+.++|+++..|++.+.+... .+ .|++|||||+||.+++
T Consensus 219 ydq~l~e~~~~~s~~~~~~~~~~i~~~~~~~~------~piiLvgNK~DL~~~k 266 (354)
T 2xtz_A 219 YDQTLFEDEQKNRMMETKELFDWVLKQPCFEK------TSFMLFLNKFDIFEKK 266 (354)
T ss_dssp TTCBCSSCTTSBHHHHHHHHHHHHHTCGGGSS------CEEEEEEECHHHHHHH
T ss_pred cccccccccchhHHHHHHHHHHHHHhccccCC------CeEEEEEECcchhhhh
Confidence 89999999999998876432 22 6899999999996543
No 120
>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}
Probab=99.59 E-value=1.6e-15 Score=124.45 Aligned_cols=101 Identities=7% Similarity=-0.081 Sum_probs=79.6
Q ss_pred ccCcceeeeeEEEEEecCCCee--eeCCCchhchhhhhhhhcCCcEEEEEEeCC----------ChhhHHHHHHHHHHHH
Q psy15036 67 HGKTVGIVFPAISVTYSIGPRY--FRFPLVSRFLSLTTGLYRGTMGFLLIFDVT----------NENSFKDVEKWLLQIK 134 (179)
Q Consensus 67 ~~~Ti~~~~~~k~v~~~~~~~i--wDt~G~e~~~~~~~~~~~~~~~vilvyDit----------~~~Sf~~l~~w~~~i~ 134 (179)
+.+|+|+.. ..+.++ +..+ ||++||++|+.++..||++++++|+|||++ +.++|++...|+..+.
T Consensus 145 ~~~TiGi~~--~~~~~~-~v~l~iwDtaGQe~~R~~w~~yy~~a~~iIfV~diS~ydq~l~e~~~~nr~~es~~~~~~i~ 221 (340)
T 4fid_A 145 RTKTTGIHE--YDFVVK-DIPFHLIDVGGQRSERKXWVSFFSDVDCAIFVTSLAEYDMKLYEDGNTSRLTESIAVFKDIM 221 (340)
T ss_dssp CCCCCSCEE--EEEESS-SCEEEEEECCSCHHHHHHHHTTSCSCSEEEEEEEGGGTTCBCC--CCSBHHHHHHHHHHHHH
T ss_pred ccceeeeEE--EEEEee-eeeeccccCCCcccccccHHHHhccCCEEEEEEECCccccccccccccchHHHHHHHHHHHh
Confidence 445677544 456667 7666 999999999999999999999999999999 8899999999988887
Q ss_pred HHhC-CccCccccceEEEEeeCCCcCCCC---------------CCCHHHHHHHHhhh
Q psy15036 135 VMDG-ALFTHFELQIVFMRGCLELLQRCR---------------EVVTPDQIMFGSTQ 176 (179)
Q Consensus 135 ~~~~-~~~~~~~~~~iilvGnK~Dl~~~r---------------~Vs~~e~~~~a~~~ 176 (179)
.... .+ .|++|+|||+||.++| ....++|.+|+.++
T Consensus 222 ~~~~~~~------~piiLv~NK~DL~~eki~~~~l~~~fp~y~g~~~~e~a~~~i~~~ 273 (340)
T 4fid_A 222 TNEFLKG------AVKLIFLNKMDLFEEKLTKVPLNTIFPEYTGGDNAVMGAQYIQQL 273 (340)
T ss_dssp HCGGGTT------SEEEEEEECHHHHHHHHHHSCGGGTCTTCCCTTCHHHHHHHHHHH
T ss_pred hhhccCC------CeEEEEEECchhhhhhcCcchHHHhhhhhcCCCCHHHHHHHHHHh
Confidence 6432 22 6899999999996532 13577887776543
No 121
>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*
Probab=99.58 E-value=3e-15 Score=122.29 Aligned_cols=99 Identities=10% Similarity=0.016 Sum_probs=78.8
Q ss_pred ccCcceeeeeEEEEEecCCCee--eeCCCchhchhhhhhhhcCCcEEEEEEeCC----------ChhhHHHHHHHHHHHH
Q psy15036 67 HGKTVGIVFPAISVTYSIGPRY--FRFPLVSRFLSLTTGLYRGTMGFLLIFDVT----------NENSFKDVEKWLLQIK 134 (179)
Q Consensus 67 ~~~Ti~~~~~~k~v~~~~~~~i--wDt~G~e~~~~~~~~~~~~~~~vilvyDit----------~~~Sf~~l~~w~~~i~ 134 (179)
..||+|+. ...+.++ +..+ ||++||++++.++..||++++++|+|||++ +.++|++...|++.+.
T Consensus 151 r~~TiGi~--~~~~~~~-~v~l~iwDtgGQe~~R~~w~~yf~~~~~iIfV~dls~ydq~l~d~~~~nr~~es~~~~~~i~ 227 (327)
T 3ohm_A 151 RVPTTGII--EYPFDLQ-SVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTII 227 (327)
T ss_dssp CCCCCSEE--EEEEEET-TEEEEEEEECCSHHHHTTGGGGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHH
T ss_pred cCceeeEE--EEEEEee-ceeeEEEEcCCchhHHHHHHHHhCCCCEEEEEEECccccccccccccHhHHHHHHHHHHHHh
Confidence 45677753 3456666 6666 999999999999999999999999999655 7788888888888876
Q ss_pred HHhC-CccCccccceEEEEeeCCCcCCCC----------------CCCHHHHHHHHh
Q psy15036 135 VMDG-ALFTHFELQIVFMRGCLELLQRCR----------------EVVTPDQIMFGS 174 (179)
Q Consensus 135 ~~~~-~~~~~~~~~~iilvGnK~Dl~~~r----------------~Vs~~e~~~~a~ 174 (179)
.... .+ .|++|+|||+||.++| .++.++|.+|..
T Consensus 228 ~~~~~~~------~~iiL~~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~e~a~~fi~ 278 (327)
T 3ohm_A 228 TYPWFQN------SSVILFLNKKDLLEEKIMYSHLVDYFPEYDGPQRDAQAAREFIL 278 (327)
T ss_dssp TSGGGTT------CEEEEEEECHHHHHHHTTTSCGGGTCTTCCSCSSCHHHHHHHHH
T ss_pred hhhccCC------ceEEEEEECchhhhhhhccchHhhhchhccCCCCCHHHHHHHHH
Confidence 5432 22 6899999999997765 689999999954
No 122
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=99.57 E-value=4e-15 Score=111.27 Aligned_cols=113 Identities=11% Similarity=-0.040 Sum_probs=76.6
Q ss_pred ceeeEEE-EeCCCCc---eeEeeecc-CCCcccCcceeeeeEEEEEecCCCee-eeCCC----------chhchhhhhhh
Q psy15036 41 SFNFGTQ-LGRRGIP---LLKHLKYL-GTGTHGKTVGIVFPAISVTYSIGPRY-FRFPL----------VSRFLSLTTGL 104 (179)
Q Consensus 41 ~~~~Kiv-lG~~gvG---~~~~~~~~-~~~~~~~Ti~~~~~~k~v~~~~~~~i-wDt~G----------~e~~~~~~~~~ 104 (179)
+..+||+ +|+.||| ++..+... +...+.++.+.+.......++ +.-. |||+| ++.+..+...|
T Consensus 21 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~~-~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~ 99 (195)
T 1svi_A 21 GGLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYIIN-DELHFVDVPGYGFAKVSKSEREAWGRMIETY 99 (195)
T ss_dssp SCCCEEEEEEBTTSSHHHHHHHHHTC-------------CCEEEEEET-TTEEEEECCCBCCCSSCHHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCccccCCCCCceeeEEEEEEC-CcEEEEECCCCCccccCHHHHHHHHHHHHHH
Confidence 3578997 9999999 66665533 455666776655554555566 5444 99999 88999999999
Q ss_pred hcCC---cEEEEEEeCCChhhHHHHH--HHHHHHHHHhCCccCccccceEEEEeeCCCcCCCCCCCH
Q psy15036 105 YRGT---MGFLLIFDVTNENSFKDVE--KWLLQIKVMDGALFTHFELQIVFMRGCLELLQRCREVVT 166 (179)
Q Consensus 105 ~~~~---~~vilvyDit~~~Sf~~l~--~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~~r~Vs~ 166 (179)
++.+ +++++|||++++.++.... .|+.. .. .|+++|+||+|+.+.+++..
T Consensus 100 ~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~------~~------~p~i~v~nK~Dl~~~~~~~~ 154 (195)
T 1svi_A 100 ITTREELKAVVQIVDLRHAPSNDDVQMYEFLKY------YG------IPVIVIATKADKIPKGKWDK 154 (195)
T ss_dssp HHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHH------TT------CCEEEEEECGGGSCGGGHHH
T ss_pred HhhhhcCCEEEEEEECCCCCCHHHHHHHHHHHH------cC------CCEEEEEECcccCChHHHHH
Confidence 9888 9999999999998888753 34322 22 58899999999987666543
No 123
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=99.56 E-value=4.4e-15 Score=122.96 Aligned_cols=96 Identities=9% Similarity=-0.065 Sum_probs=71.7
Q ss_pred cceeeeeEEEEEecCCCee--eeCCCchhchhhhhhhhcCCcEEEEEEeCCC----------hhhHHHHHHHHHHHHHHh
Q psy15036 70 TVGIVFPAISVTYSIGPRY--FRFPLVSRFLSLTTGLYRGTMGFLLIFDVTN----------ENSFKDVEKWLLQIKVMD 137 (179)
Q Consensus 70 Ti~~~~~~k~v~~~~~~~i--wDt~G~e~~~~~~~~~~~~~~~vilvyDit~----------~~Sf~~l~~w~~~i~~~~ 137 (179)
|+|+.. +.+.++ +..+ ||++||++++..+..||++++++|+|||+++ .++|+++..|++.+....
T Consensus 188 T~Gi~~--~~~~~~-~~~l~i~Dt~Gq~~~r~~w~~~f~~~~~iIfv~dls~~dq~l~ed~~~n~~~es~~~~~~i~~~~ 264 (362)
T 1zcb_A 188 TKGIHE--YDFEIK-NVPFKMVDVGGQRSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNR 264 (362)
T ss_dssp CSSEEE--EEEEET-TEEEEEEEECC-------CTTSCTTCCEEEEEEETTCTTCEETTEEEEEHHHHHHHHHHHHHTCG
T ss_pred ccceEE--EEeeeC-CeEEEEEeccchhhhhhhHHHHhCCCCEEEEEEECccccccccccccccHHHHHHHHHHHHhcch
Confidence 456543 456667 6666 9999999999999999999999999999999 789999999999887642
Q ss_pred -CCccCccccceEEEEeeCCCcCCCC----------------CCCHHHHHHHHh
Q psy15036 138 -GALFTHFELQIVFMRGCLELLQRCR----------------EVVTPDQIMFGS 174 (179)
Q Consensus 138 -~~~~~~~~~~~iilvGnK~Dl~~~r----------------~Vs~~e~~~~a~ 174 (179)
..+ .|+||+|||+||.+++ .++.+++.+|+.
T Consensus 265 ~~~~------~piILv~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~~e~~~~~~ 312 (362)
T 1zcb_A 265 VFSN------VSIILFLNKTDLLEEKVQVVSIKDYFLEFEGDPHCLRDVQKFLV 312 (362)
T ss_dssp GGTT------SEEEEEEECHHHHHHHTTTCCGGGTCTTCCSCTTCHHHHHHHHH
T ss_pred hhCC------CCEEEEEEChhhhhhhccccchhhcCccccCCCCCHHHHHHHHH
Confidence 222 6899999999996543 388999999873
No 124
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=99.55 E-value=1e-14 Score=108.70 Aligned_cols=122 Identities=13% Similarity=0.026 Sum_probs=87.1
Q ss_pred ceeeEEE-EeCCCCc---eeEeeeccCCCcccCcceeeeeEEEEEecCCCee-eeCCC----------chhchhhhhhhh
Q psy15036 41 SFNFGTQ-LGRRGIP---LLKHLKYLGTGTHGKTVGIVFPAISVTYSIGPRY-FRFPL----------VSRFLSLTTGLY 105 (179)
Q Consensus 41 ~~~~Kiv-lG~~gvG---~~~~~~~~~~~~~~~Ti~~~~~~k~v~~~~~~~i-wDt~G----------~e~~~~~~~~~~ 105 (179)
...+||+ +|+.||| ++..+.......+.++.+.+........+ .... |||+| ++.+..+...|+
T Consensus 21 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~t~~~~~~~~~-~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~ 99 (195)
T 3pqc_A 21 PLKGEVAFVGRSNVGKSSLLNALFNRKIAFVSKTPGKTRSINFYLVN-SKYYFVDLPGYGYAKVSKKERMLWKRLVEDYF 99 (195)
T ss_dssp CTTCEEEEEEBTTSSHHHHHHHHHTSCCSCCCSSCCCCCCEEEEEET-TTEEEEECCCBSSSCCCHHHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHcCccccccCCCCCccCeEEEEEC-CcEEEEECCCCccccCChhhHHHHHHHHHHHH
Confidence 4578997 9999999 66666654445566666655544444444 4444 99999 888989999999
Q ss_pred cCC---cEEEEEEeCCChhh--HHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCC--CCCCCHHHHHHHHhh
Q psy15036 106 RGT---MGFLLIFDVTNENS--FKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQR--CREVVTPDQIMFGST 175 (179)
Q Consensus 106 ~~~---~~vilvyDit~~~S--f~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~--~r~Vs~~e~~~~a~~ 175 (179)
+.+ +++++|+|.++..+ +..+..|+... + .|+++|+||+|+.+ ++++..+++++++..
T Consensus 100 ~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~------~------~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~ 164 (195)
T 3pqc_A 100 KNRWSLQMVFLLVDGRIPPQDSDLMMVEWMKSL------N------IPFTIVLTKMDKVKMSERAKKLEEHRKVFSK 164 (195)
T ss_dssp HHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHT------T------CCEEEEEECGGGSCGGGHHHHHHHHHHHHHS
T ss_pred hcCcCceEEEEEecCCCCCCHHHHHHHHHHHHc------C------CCEEEEEEChhcCChHHHHHHHHHHHHHHhh
Confidence 887 99999999988644 44445565443 2 58899999999954 345666777777765
No 125
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=99.52 E-value=9.7e-15 Score=105.57 Aligned_cols=107 Identities=11% Similarity=-0.057 Sum_probs=69.6
Q ss_pred eEEE-EeCCCCc---eeEeeeccCC--CcccCcceeeeeEEEEEecCCCee--eeCCCchh-------chhhhhhhhcCC
Q psy15036 44 FGTQ-LGRRGIP---LLKHLKYLGT--GTHGKTVGIVFPAISVTYSIGPRY--FRFPLVSR-------FLSLTTGLYRGT 108 (179)
Q Consensus 44 ~Kiv-lG~~gvG---~~~~~~~~~~--~~~~~Ti~~~~~~k~v~~~~~~~i--wDt~G~e~-------~~~~~~~~~~~~ 108 (179)
.||+ +|+.||| ++.++..... ....++...+.....+..+ +..+ |||+|++. +......+++.+
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~ 80 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKKRSAVVADVPGVTRDLKEGVVETD-RGRFLLVDTGGLWSGDKWEKKIQEKVDRALEDA 80 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHCCC-----------CCEEEEEEET-TEEEEEEECGGGCSSSSCCHHHHHHHHHHTTTC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCeeeccCCCCceecceEEEEEeC-CceEEEEECCCCCCccchHHHHHHHHHHHHHhC
Confidence 5887 9999999 5555553321 1222333344555667777 7776 99999987 345667789999
Q ss_pred cEEEEEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCCC
Q psy15036 109 MGFLLIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQRC 161 (179)
Q Consensus 109 ~~vilvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~~ 161 (179)
|++++|||++++.+... .|+....+. .+ .|+++||||+|+.+.
T Consensus 81 ~~~i~v~d~~~~~~~~~--~~~~~~~~~--~~------~p~ilv~nK~Dl~~~ 123 (161)
T 2dyk_A 81 EVVLFAVDGRAELTQAD--YEVAEYLRR--KG------KPVILVATKVDDPKH 123 (161)
T ss_dssp SEEEEEEESSSCCCHHH--HHHHHHHHH--HT------CCEEEEEECCCSGGG
T ss_pred CEEEEEEECCCcccHhH--HHHHHHHHh--cC------CCEEEEEECcccccc
Confidence 99999999998655432 333333222 12 578999999999764
No 126
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=99.48 E-value=4.6e-14 Score=111.61 Aligned_cols=122 Identities=14% Similarity=0.026 Sum_probs=85.4
Q ss_pred eeeEEE-EeCCCCc---eeEeeec-cCCCcccCcceeeeeEEEEEecCCCee--eeCCCchhchh------hhhhhh--c
Q psy15036 42 FNFGTQ-LGRRGIP---LLKHLKY-LGTGTHGKTVGIVFPAISVTYSIGPRY--FRFPLVSRFLS------LTTGLY--R 106 (179)
Q Consensus 42 ~~~Kiv-lG~~gvG---~~~~~~~-~~~~~~~~Ti~~~~~~k~v~~~~~~~i--wDt~G~e~~~~------~~~~~~--~ 106 (179)
..+||+ +|+.||| ++..+.+ .+.....|.+..+.....+... +..+ |||+|++++.. +.+.|+ .
T Consensus 4 ~~~kI~lvG~~nvGKTsL~n~l~g~~~~~~~~pg~tv~~~~~~~~~~-~~~~~l~DtpG~~~~~~~~~~e~v~~~~~~~~ 82 (258)
T 3a1s_A 4 HMVKVALAGCPNVGKTSLFNALTGTKQYVANWPGVTVEKKEGVFTYK-GYTINLIDLPGTYSLGYSSIDEKIARDYLLKG 82 (258)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEET-TEEEEEEECCCCSSCCSSSHHHHHHHHHHHHS
T ss_pred CceEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceEEEEEEEEEEC-CeEEEEEECCCcCccCCCCHHHHHHHHHHhhc
Confidence 468997 9999999 5555553 2222333444445555556666 6566 99999998865 346676 5
Q ss_pred CCcEEEEEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCCCCCCCHHHHHHHHhhhC
Q psy15036 107 GTMGFLLIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQRCREVVTPDQIMFGSTQS 177 (179)
Q Consensus 107 ~~~~vilvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~~r~Vs~~e~~~~a~~~~ 177 (179)
++|++++|+|.++.++.. .|..++.+. . .|+++|+||+|+.+++.++. ++.++++..+
T Consensus 83 ~~d~ii~V~D~t~~~~~~---~~~~~l~~~---~------~pvilv~NK~Dl~~~~~i~~-~~~~l~~~lg 140 (258)
T 3a1s_A 83 DADLVILVADSVNPEQSL---YLLLEILEM---E------KKVILAMTAIDEAKKTGMKI-DRYELQKHLG 140 (258)
T ss_dssp CCSEEEEEEETTSCHHHH---HHHHHHHTT---T------CCEEEEEECHHHHHHTTCCB-CHHHHHHHHC
T ss_pred CCCEEEEEeCCCchhhHH---HHHHHHHhc---C------CCEEEEEECcCCCCccchHH-HHHHHHHHcC
Confidence 899999999999976543 466666543 2 58899999999987777764 4677777654
No 127
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.44 E-value=7e-14 Score=118.13 Aligned_cols=120 Identities=9% Similarity=-0.089 Sum_probs=84.0
Q ss_pred eeeEEE-EeCCCCc---eeEeeeccCC--CcccCcceeeeeEEEEEecCCCee--eeCCCc----------hhchhhhh-
Q psy15036 42 FNFGTQ-LGRRGIP---LLKHLKYLGT--GTHGKTVGIVFPAISVTYSIGPRY--FRFPLV----------SRFLSLTT- 102 (179)
Q Consensus 42 ~~~Kiv-lG~~gvG---~~~~~~~~~~--~~~~~Ti~~~~~~k~v~~~~~~~i--wDt~G~----------e~~~~~~~- 102 (179)
..+||+ +|+++|| ++..+.+... ....++...+.....+.++ +..+ |||+|+ |+|..++.
T Consensus 174 ~~~ki~lvG~~nvGKSSLin~l~~~~~~~~~~~~gtT~d~~~~~~~~~-~~~~~l~DT~G~~~~~~~~~~~e~~~~~~~~ 252 (436)
T 2hjg_A 174 EVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYN-QQEFVIVDTAGMRKKGKVYETTEKYSVLRAL 252 (436)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHTSTTEEEC---------CCEEEEET-TEEEEETTHHHHTCBTTBCCCCSHHHHHHHH
T ss_pred cCcEEEEEcCCCCCHHHHHHHHhCCCceeecCCCCceeeeeEEEEEEC-CeEEEEEECCCcCcCccccchHHHHHHHHHH
Confidence 468997 9999999 6655553221 1222333344555667777 7777 999998 77766655
Q ss_pred hhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCCCCCCCHHHHHHH
Q psy15036 103 GLYRGTMGFLLIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQRCREVVTPDQIMF 172 (179)
Q Consensus 103 ~~~~~~~~vilvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~~r~Vs~~e~~~~ 172 (179)
.+++.+|++++|||.++..+++.+ .|+..+.+. . .|+++|+||+|+.+++.++.++..+.
T Consensus 253 ~~~~~ad~~llv~D~~~~~s~~~~-~~~~~~~~~---~------~~iiiv~NK~Dl~~~~~~~~~~~~~~ 312 (436)
T 2hjg_A 253 KAIDRSEVVAVVLDGEEGIIEQDK-RIAGYAHEA---G------KAVVIVVNKWDAVDKDESTMKEFEEN 312 (436)
T ss_dssp HHHHHCSEEEEEEETTTCCCHHHH-HHHHHHHHT---T------CEEEEEEECGGGSCCCTTHHHHHHHH
T ss_pred HHHHhCCEEEEEEcCCcCCcHHHH-HHHHHHHHc---C------CcEEEEEECccCCCcchHHHHHHHHH
Confidence 488999999999999999999886 577776542 2 58899999999988777776665443
No 128
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=99.43 E-value=6.2e-13 Score=105.03 Aligned_cols=121 Identities=11% Similarity=0.018 Sum_probs=83.0
Q ss_pred eeeEEE-EeCCCCc---eeEeeeccC---CCcccCcceeeeeEEEEEecCCCee--eeCCCchhchhhhhhhhc------
Q psy15036 42 FNFGTQ-LGRRGIP---LLKHLKYLG---TGTHGKTVGIVFPAISVTYSIGPRY--FRFPLVSRFLSLTTGLYR------ 106 (179)
Q Consensus 42 ~~~Kiv-lG~~gvG---~~~~~~~~~---~~~~~~Ti~~~~~~k~v~~~~~~~i--wDt~G~e~~~~~~~~~~~------ 106 (179)
..+||+ +|..|+| ++..+.+.. ...+.++ ........+..+ +..+ |||+|++++......+++
T Consensus 35 ~~~~I~lvG~~g~GKSSLin~l~~~~~~~~~~~~~~-t~~~~~~~~~~~-~~~l~liDTpG~~~~~~~~~~~~~~i~~~l 112 (262)
T 3def_A 35 NSMTVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAE-GLRPVMVSRTMG-GFTINIIDTPGLVEAGYVNHQALELIKGFL 112 (262)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHTSCCSCCCSSCC--CCCCEEEEEEET-TEEEEEEECCCSEETTEECHHHHHHHHHHT
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCc-ceeeEEEEEEEC-CeeEEEEECCCCCCcccchHHHHHHHHHHH
Confidence 468997 9999999 555554322 2222222 122333455666 6666 999999988776666665
Q ss_pred ---CCcEEEEEEeCCChhhHHHH-HHHHHHHHHHhCCccCccccceEEEEeeCCCcCCCCCCCHHHH
Q psy15036 107 ---GTMGFLLIFDVTNENSFKDV-EKWLLQIKVMDGALFTHFELQIVFMRGCLELLQRCREVVTPDQ 169 (179)
Q Consensus 107 ---~~~~vilvyDit~~~Sf~~l-~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~~r~Vs~~e~ 169 (179)
++|++++|+|++... |... ..|++.+.+..+... ..|+++|+||+|+...+..+.++.
T Consensus 113 ~~~~~~~il~V~~~d~~~-~~~~~~~~~~~l~~~~~~~~----~~~~ivv~nK~Dl~~~~~~~~e~~ 174 (262)
T 3def_A 113 VNRTIDVLLYVDRLDVYA-VDELDKQVVIAITQTFGKEI----WCKTLLVLTHAQFSPPDELSYETF 174 (262)
T ss_dssp TTCEECEEEEEEESSCSC-CCHHHHHHHHHHHHHHCGGG----GGGEEEEEECTTCCCSTTCCHHHH
T ss_pred hcCCCCEEEEEEcCCCCC-CCHHHHHHHHHHHHHhchhh----hcCEEEEEeCcccCCCCCccHHHH
Confidence 889999999998766 5554 588888887765431 137889999999976666666553
No 129
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=99.41 E-value=3.8e-13 Score=104.51 Aligned_cols=130 Identities=9% Similarity=-0.039 Sum_probs=77.2
Q ss_pred ceeeEEE-EeCCCCc---eeEeeec-cCCCcccC--cceeeeeEEEEEecCCCee--eeCCC-----------chhchhh
Q psy15036 41 SFNFGTQ-LGRRGIP---LLKHLKY-LGTGTHGK--TVGIVFPAISVTYSIGPRY--FRFPL-----------VSRFLSL 100 (179)
Q Consensus 41 ~~~~Kiv-lG~~gvG---~~~~~~~-~~~~~~~~--Ti~~~~~~k~v~~~~~~~i--wDt~G-----------~e~~~~~ 100 (179)
+..+||+ +|..||| ++..+.+ .+.....+ ++..++....+.++ +..+ |||+| ++.+...
T Consensus 27 ~~~~~i~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~-~~~i~liDTpG~~~~~~~~~~~~~~~~~~ 105 (239)
T 3lxx_A 27 NSQLRIVLVGKTGAGKSATGNSILGRKVFHSGTAAKSITKKCEKRSSSWK-ETELVVVDTPGIFDTEVPNAETSKEIIRC 105 (239)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHTSCCSCC-------CCSCEEEEEEET-TEEEEEEECCSCC-----CHHHHHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHcCCCcCccCCCCCceeeeEEEEEEEeC-CceEEEEECCCccCCCCCHHHHHHHHHHH
Confidence 3478997 9999999 5555553 22233333 33334445566677 7676 99999 4455566
Q ss_pred hhhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCCCCCCC------HHHHHHHHh
Q psy15036 101 TTGLYRGTMGFLLIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQRCREVV------TPDQIMFGS 174 (179)
Q Consensus 101 ~~~~~~~~~~vilvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~~r~Vs------~~e~~~~a~ 174 (179)
...+++++|++|+|+|+++..+ ....|+..+.+..+.. ...|+++|+||+|+.+.+.+. .++.+++++
T Consensus 106 ~~~~~~~~~~~l~v~d~~~~~~--~~~~~l~~~~~~~~~~----~~~~~iiv~nK~D~~~~~~~~~~i~~~~~~l~~l~~ 179 (239)
T 3lxx_A 106 ILLTSPGPHALLLVVPLGRYTE--EEHKATEKILKMFGER----ARSFMILIFTRKDDLGDTNLHDYLREAPEDIQDLMD 179 (239)
T ss_dssp HHHTTTCCSEEEEEEETTCCSS--HHHHHHHHHHHHHHHH----HGGGEEEEEECGGGC------------CHHHHHHHH
T ss_pred HHhcCCCCcEEEEEeeCCCCCH--HHHHHHHHHHHHhhhh----ccceEEEEEeCCccCCcccHHHHHHhchHHHHHHHH
Confidence 6667788999999999986544 2234444444332211 003788899999997666555 346677766
Q ss_pred hhC
Q psy15036 175 TQS 177 (179)
Q Consensus 175 ~~~ 177 (179)
+.+
T Consensus 180 ~~~ 182 (239)
T 3lxx_A 180 IFG 182 (239)
T ss_dssp HHS
T ss_pred HcC
Confidence 654
No 130
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=99.41 E-value=1.4e-13 Score=109.70 Aligned_cols=120 Identities=10% Similarity=-0.055 Sum_probs=81.0
Q ss_pred eeeEEE-EeCCCCc---eeEeeecc--CCCcccCcceeeeeEEEEEecCCCee--eeCCCchhch------hhhhhhhc-
Q psy15036 42 FNFGTQ-LGRRGIP---LLKHLKYL--GTGTHGKTVGIVFPAISVTYSIGPRY--FRFPLVSRFL------SLTTGLYR- 106 (179)
Q Consensus 42 ~~~Kiv-lG~~gvG---~~~~~~~~--~~~~~~~Ti~~~~~~k~v~~~~~~~i--wDt~G~e~~~------~~~~~~~~- 106 (179)
..+||+ +|++||| ++..+.+. +...+ | |.++..+...+..+..+ |||+|++++. .+.+.|++
T Consensus 2 ~~~kI~lvG~~nvGKSTL~n~L~g~~~~v~~~-p--g~tv~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~e~v~~~~~~~ 78 (272)
T 3b1v_A 2 SMTEIALIGNPNSGKTSLFNLITGHNQRVGNW-P--GVTVERKSGLVKKNKDLEIQDLPGIYSMSPYSPEAKVARDYLLS 78 (272)
T ss_dssp -CEEEEEECCTTSSHHHHHHHHHCCCCCCCSS-S--CCCCSCEEEECTTCTTEEEEECCCCSCSSCSSHHHHHHHHHHHT
T ss_pred CceEEEEECCCCCCHHHHHHHHHCCCCcccCC-C--CCcEEEEEEEEecCCeEEEEECCCcCccCCCChHHHHHHHHHhc
Confidence 357897 9999999 66666532 22222 3 33332334444412223 9999999886 46677887
Q ss_pred -CCcEEEEEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCCCCCCCHHHHHHHHhhhC
Q psy15036 107 -GTMGFLLIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQRCREVVTPDQIMFGSTQS 177 (179)
Q Consensus 107 -~~~~vilvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~~r~Vs~~e~~~~a~~~~ 177 (179)
++|++++|||.++.+++ ..|..++.+. . .|+++|+||+|+.+.+.++ .++.++++..+
T Consensus 79 ~~~d~vi~V~D~t~~e~~---~~~~~~l~~~---~------~p~ilv~NK~Dl~~~~~~~-~~~~~l~~~lg 137 (272)
T 3b1v_A 79 QRADSILNVVDATNLERN---LYLTTQLIET---G------IPVTIALNMIDVLDGQGKK-INVDKLSYHLG 137 (272)
T ss_dssp TCCSEEEEEEEGGGHHHH---HHHHHHHHHT---C------SCEEEEEECHHHHHHTTCC-CCHHHHHHHHT
T ss_pred CCCCEEEEEecCCchHhH---HHHHHHHHhc---C------CCEEEEEEChhhCCcCCcH-HHHHHHHHHcC
Confidence 59999999999987655 3566666552 2 5888999999997766666 46677776654
No 131
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.41 E-value=2.2e-13 Score=115.73 Aligned_cols=125 Identities=9% Similarity=-0.101 Sum_probs=88.3
Q ss_pred ceeeEEE-EeCCCCc---eeEeeeccC--CCcccCcceeeeeEEEEEecCCCee--eeCCC----------chhchhhhh
Q psy15036 41 SFNFGTQ-LGRRGIP---LLKHLKYLG--TGTHGKTVGIVFPAISVTYSIGPRY--FRFPL----------VSRFLSLTT 102 (179)
Q Consensus 41 ~~~~Kiv-lG~~gvG---~~~~~~~~~--~~~~~~Ti~~~~~~k~v~~~~~~~i--wDt~G----------~e~~~~~~~ 102 (179)
...+||+ +|+.+|| ++..+.+.. .....++...+.....+.++ +..+ |||+| +++|..++.
T Consensus 193 ~~~~ki~ivG~~~vGKSslin~l~~~~~~~~~~~~gtt~~~~~~~~~~~-~~~~~l~DT~G~~~~~~~~~~~e~~~~~~~ 271 (456)
T 4dcu_A 193 EEVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYN-QQEFVIVDTAGMRKKGKVYETTEKYSVLRA 271 (456)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHTSTTEEECC------CTTSEEEEET-TEEEEETTGGGTTTBTTBCCCCSHHHHHHH
T ss_pred cccceeEEecCCCCCHHHHHHHHhCCCccccCCCCCeEEEEEEEEEEEC-CceEEEEECCCCCcCcccchHHHHHHHHHH
Confidence 4578997 9999999 555555321 12223333344545667777 7777 99999 899988776
Q ss_pred h-hhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCCCCCCCHHHHHHHHhhh
Q psy15036 103 G-LYRGTMGFLLIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQRCREVVTPDQIMFGSTQ 176 (179)
Q Consensus 103 ~-~~~~~~~vilvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~~r~Vs~~e~~~~a~~~ 176 (179)
. +++.+|++++|+|.++.-+ +....|...+.+ .. .|+++|+||+|+.++++++.+++.+.+++.
T Consensus 272 ~~~~~~ad~~llviD~~~~~~-~~~~~~~~~~~~---~~------~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~ 336 (456)
T 4dcu_A 272 LKAIDRSEVVAVVLDGEEGII-EQDKRIAGYAHE---AG------KAVVIVVNKWDAVDKDESTMKEFEENIRDH 336 (456)
T ss_dssp HHHHHHCSEEEEEEETTTCCC-HHHHHHHHHHHH---TT------CEEEEEEECGGGSCCCSSHHHHHHHHHHHH
T ss_pred HHHHhhCCEEEEEEeCCCCcC-HHHHHHHHHHHH---cC------CCEEEEEEChhcCCCchHHHHHHHHHHHHh
Confidence 4 7899999999999987543 223456666554 22 488899999999988899999998888765
No 132
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=99.41 E-value=8.8e-14 Score=109.91 Aligned_cols=118 Identities=9% Similarity=-0.020 Sum_probs=83.1
Q ss_pred EEE-EeCCCCc---eeEeeecc-CCCcccCcceeeeeEEEEEecCCCee--eeCCCchhchh----------hhhhhh--
Q psy15036 45 GTQ-LGRRGIP---LLKHLKYL-GTGTHGKTVGIVFPAISVTYSIGPRY--FRFPLVSRFLS----------LTTGLY-- 105 (179)
Q Consensus 45 Kiv-lG~~gvG---~~~~~~~~-~~~~~~~Ti~~~~~~k~v~~~~~~~i--wDt~G~e~~~~----------~~~~~~-- 105 (179)
||+ +|+.||| ++..+.+. +.....|++..+.....+.++ +..+ |||+|+..+.. +.+.|+
T Consensus 3 kI~lvG~~n~GKSTL~n~L~g~~~~v~~~pg~Tv~~~~~~~~~~-~~~~~lvDtpG~~~~~~~~~~~~~~e~i~~~~~~~ 81 (256)
T 3iby_A 3 HALLIGNPNCGKTTLFNALTNANQRVGNWPGVTVEKKTGEFLLG-EHLIEITDLPGVYSLVANAEGISQDEQIAAQSVID 81 (256)
T ss_dssp EEEEEESTTSSHHHHHHHHHTTSEEEEECTTSSSEEEEEEEEET-TEEEEEEECCCCSSCC------CHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCCccCCCCceEEEEEEEEEEC-CeEEEEEeCCCcccccccccCCCHHHHHHHHHHhh
Confidence 676 9999999 55555532 223344566666777778888 7776 99999988764 567788
Q ss_pred cCCcEEEEEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCCCCCCCHHHHHHHHhhh
Q psy15036 106 RGTMGFLLIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQRCREVVTPDQIMFGSTQ 176 (179)
Q Consensus 106 ~~~~~vilvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~~r~Vs~~e~~~~a~~~ 176 (179)
+++|++|+|+|.++.+++..+..|+.+ .. .|+++|+||+|+.+.+.+... ...+++..
T Consensus 82 ~~~d~vi~VvDas~~~~~~~l~~~l~~------~~------~pvilv~NK~Dl~~~~~~~~~-~~~l~~~l 139 (256)
T 3iby_A 82 LEYDCIINVIDACHLERHLYLTSQLFE------LG------KPVVVALNMMDIAEHRGISID-TEKLESLL 139 (256)
T ss_dssp SCCSEEEEEEEGGGHHHHHHHHHHHTT------SC------SCEEEEEECHHHHHHTTCEEC-HHHHHHHH
T ss_pred CCCCEEEEEeeCCCchhHHHHHHHHHH------cC------CCEEEEEEChhcCCcCCcHHH-HHHHHHHc
Confidence 899999999999998777765554332 12 588999999999765554432 33354443
No 133
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=99.40 E-value=2.3e-13 Score=107.95 Aligned_cols=122 Identities=10% Similarity=-0.011 Sum_probs=85.9
Q ss_pred eeEEE-EeCCCCc---eeEeeecc-CCCcccCcceeeeeEEEEEecCCCee--eeCCCchhchh------hhhhhh--cC
Q psy15036 43 NFGTQ-LGRRGIP---LLKHLKYL-GTGTHGKTVGIVFPAISVTYSIGPRY--FRFPLVSRFLS------LTTGLY--RG 107 (179)
Q Consensus 43 ~~Kiv-lG~~gvG---~~~~~~~~-~~~~~~~Ti~~~~~~k~v~~~~~~~i--wDt~G~e~~~~------~~~~~~--~~ 107 (179)
.+||+ +|++||| ++..+.+. +.....|+++.+.....+.++ +..+ |||+|+..+.. +.+.|+ .+
T Consensus 3 ~~~i~lvG~~g~GKTTL~n~l~g~~~~~~~~~~~t~~~~~~~~~~~-~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~ 81 (271)
T 3k53_A 3 LKTVALVGNPNVGKTTIFNALTGLRQHVGNWPGVTVEKKEGIMEYR-EKEFLVVDLPGIYSLTAHSIDELIARNFILDGN 81 (271)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHTTCEEEEECTTSSCEEEEEEEEET-TEEEEEEECCCCSCCCSSCHHHHHHHHHHHTTC
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeEEEeeEEEEEEC-CceEEEEeCCCccccccCCHHHHHHHHhhhccC
Confidence 57897 9999999 55555532 333455666667777777777 7776 99999998876 677777 68
Q ss_pred CcEEEEEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCCCCCCCHHHHHHHHhhhC
Q psy15036 108 TMGFLLIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQRCREVVTPDQIMFGSTQS 177 (179)
Q Consensus 108 ~~~vilvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~~r~Vs~~e~~~~a~~~~ 177 (179)
+|++++|+|.++.+ ....|..++.+... .|+++|+||+|+.+.+.+..+ ...+++..+
T Consensus 82 ~d~vi~v~D~~~~~---~~~~~~~~~~~~~~--------~p~ilv~NK~Dl~~~~~~~~~-~~~l~~~lg 139 (271)
T 3k53_A 82 ADVIVDIVDSTCLM---RNLFLTLELFEMEV--------KNIILVLNKFDLLKKKGAKID-IKKMRKELG 139 (271)
T ss_dssp CSEEEEEEEGGGHH---HHHHHHHHHHHTTC--------CSEEEEEECHHHHHHHTCCCC-HHHHHHHHS
T ss_pred CcEEEEEecCCcch---hhHHHHHHHHhcCC--------CCEEEEEEChhcCcccccHHH-HHHHHHHcC
Confidence 99999999999853 33445555554321 478899999999765555543 555655543
No 134
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=99.39 E-value=2.8e-13 Score=107.85 Aligned_cols=120 Identities=6% Similarity=-0.043 Sum_probs=81.1
Q ss_pred eeEEE-EeCCCCc---eeEeeecc-CCCcccCcceeeeeEEEEEecCCCee--eeCCCchhchh----------hhhhhh
Q psy15036 43 NFGTQ-LGRRGIP---LLKHLKYL-GTGTHGKTVGIVFPAISVTYSIGPRY--FRFPLVSRFLS----------LTTGLY 105 (179)
Q Consensus 43 ~~Kiv-lG~~gvG---~~~~~~~~-~~~~~~~Ti~~~~~~k~v~~~~~~~i--wDt~G~e~~~~----------~~~~~~ 105 (179)
.+||+ +|+.|+| ++..+.+. +.....|++..+.....+.+. +..+ |||+|++.+.. +...|+
T Consensus 3 ~~~I~lvG~~n~GKSTLin~l~g~~~~v~~~~g~t~~~~~~~~~~~-~~~~~liDtpG~~~~~~~~~~~~~~e~i~~~~~ 81 (274)
T 3i8s_A 3 KLTIGLIGNPNSGKTTLFNQLTGSRQRVGNWAGVTVERKEGQFSTT-DHQVTLVDLPGTYSLTTISSQTSLDEQIACHYI 81 (274)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHTTCEEEEECTTSSSEEEEEEEECS-SCEEEEEECCCCSCSCC----CCHHHHHHHHHH
T ss_pred ccEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeeEEEEEEEEEeC-CCceEEEECcCCCccccccccCCHHHHHHHHHH
Confidence 57897 9999999 55555532 222344555556666777777 7777 99999988762 234444
Q ss_pred --cCCcEEEEEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCCCCCCCHHHHHHHHhhh
Q psy15036 106 --RGTMGFLLIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQRCREVVTPDQIMFGSTQ 176 (179)
Q Consensus 106 --~~~~~vilvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~~r~Vs~~e~~~~a~~~ 176 (179)
+.+|++|+|+|.++.+++..+..| +.+. + .|+++|+||+|+.+.+.+.. +..++++..
T Consensus 82 ~~~~~d~ii~VvD~~~~~~~~~~~~~---l~~~---~------~p~ivv~NK~Dl~~~~~~~~-~~~~l~~~l 141 (274)
T 3i8s_A 82 LSGDADLLINVVDASNLERNLYLTLQ---LLEL---G------IPCIVALNMLDIAEKQNIRI-EIDALSARL 141 (274)
T ss_dssp HHTCCSEEEEEEEGGGHHHHHHHHHH---HHHH---T------CCEEEEEECHHHHHHTTEEE-CHHHHHHHH
T ss_pred hhcCCCEEEEEecCCChHHHHHHHHH---HHhc---C------CCEEEEEECccchhhhhHHH-HHHHHHHhc
Confidence 799999999999997766554444 4433 2 58889999999976554432 234454443
No 135
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=99.39 E-value=8.4e-13 Score=111.29 Aligned_cols=122 Identities=11% Similarity=-0.072 Sum_probs=80.2
Q ss_pred CceeeEEE-EeCCCCc---eeEeeeccC--CCcccCcceeeeeEEEEEecCCC-ee--eeCCCchhchhh-------hhh
Q psy15036 40 FSFNFGTQ-LGRRGIP---LLKHLKYLG--TGTHGKTVGIVFPAISVTYSIGP-RY--FRFPLVSRFLSL-------TTG 103 (179)
Q Consensus 40 ~~~~~Kiv-lG~~gvG---~~~~~~~~~--~~~~~~Ti~~~~~~k~v~~~~~~-~i--wDt~G~e~~~~~-------~~~ 103 (179)
....+||+ +|..++| ++..+.... .....+....+...+.+.+. +. .+ |||+|++.|..+ ...
T Consensus 31 ~~~~~kI~IvG~~~vGKSTLin~L~~~~~~~~~~~~gtT~d~~~~~~~~~-~~~~l~liDTpG~~d~~~l~~~~~~~~~~ 109 (423)
T 3qq5_A 31 AGFRRYIVVAGRRNVGKSSFMNALVGQNVSIVSDYAGTTTDPVYKSMELH-PIGPVTLVDTPGLDDVGELGRLRVEKARR 109 (423)
T ss_dssp -CCCEEEEEECSCSTTTTTTTTSSCC-------------CCCCEEEEEET-TTEEEEEEECSSTTCCCTTCCCCHHHHHH
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHcCCCCccCCCCCeeeeeEEEEEEEC-CCCeEEEEECcCCCcccchhHHHHHHHHH
Confidence 45678997 9999999 555555321 11222223334555677777 55 55 999999988655 355
Q ss_pred hhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCCCCCCCHHHHHHHHhhh
Q psy15036 104 LYRGTMGFLLIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQRCREVVTPDQIMFGSTQ 176 (179)
Q Consensus 104 ~~~~~~~vilvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~~r~Vs~~e~~~~a~~~ 176 (179)
+++++|++|+|||.+..+. ...|+..+.+. + .|+++|+||+|+.+.+.. +++++++++.
T Consensus 110 ~l~~aD~vllVvD~~~~~~---~~~~l~~l~~~---~------~piIvV~NK~Dl~~~~~~--~~~~~l~~~~ 168 (423)
T 3qq5_A 110 VFYRADCGILVTDSAPTPY---EDDVVNLFKEM---E------IPFVVVVNKIDVLGEKAE--ELKGLYESRY 168 (423)
T ss_dssp HHTSCSEEEEECSSSCCHH---HHHHHHHHHHT---T------CCEEEECCCCTTTTCCCT--HHHHHSSCCT
T ss_pred HHhcCCEEEEEEeCCChHH---HHHHHHHHHhc---C------CCEEEEEeCcCCCCccHH--HHHHHHHHHc
Confidence 8999999999999944433 35677777665 2 588999999999876655 5566665443
No 136
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=99.38 E-value=4.7e-13 Score=114.37 Aligned_cols=113 Identities=9% Similarity=-0.099 Sum_probs=66.0
Q ss_pred eeEEE-EeCCCCc---eeEeeeccC--CCcccCcceeeeeEEEEEecCCCee--eeCCCchhchhhh--------hhhhc
Q psy15036 43 NFGTQ-LGRRGIP---LLKHLKYLG--TGTHGKTVGIVFPAISVTYSIGPRY--FRFPLVSRFLSLT--------TGLYR 106 (179)
Q Consensus 43 ~~Kiv-lG~~gvG---~~~~~~~~~--~~~~~~Ti~~~~~~k~v~~~~~~~i--wDt~G~e~~~~~~--------~~~~~ 106 (179)
.+||+ +|..+|| ++..+.... .....++...++....+.++ +..+ |||+|++++.... ..+++
T Consensus 233 ~~kV~ivG~~nvGKSSLln~L~~~~~a~vs~~~gtT~d~~~~~i~~~-g~~l~liDT~G~~~~~~~ve~~gi~~~~~~~~ 311 (476)
T 3gee_A 233 GVSTVIAGKPNAGKSTLLNTLLGQERAIVSHMPGTTRDYIEECFIHD-KTMFRLTDTAGLREAGEEIEHEGIRRSRMKMA 311 (476)
T ss_dssp CEEEEEECCTTSSHHHHHHHCC------------------CEEEEET-TEEEEEEC--------------------CCCS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEEC-CeEEEEEECCCCCcchhHHHHHHHHHHHhhcc
Confidence 57897 9999999 555555331 12223333345556777888 8777 9999998876433 44789
Q ss_pred CCcEEEEEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCCCCCC
Q psy15036 107 GTMGFLLIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQRCREV 164 (179)
Q Consensus 107 ~~~~vilvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~~r~V 164 (179)
.+|++++|||.+++.+++++..+...+.... . .|+++|+||+|+...+.+
T Consensus 312 ~aD~vl~VvD~s~~~s~~~~~~~~~~l~~l~-~-------~piIvV~NK~Dl~~~~~~ 361 (476)
T 3gee_A 312 EADLILYLLDLGTERLDDELTEIRELKAAHP-A-------AKFLTVANKLDRAANADA 361 (476)
T ss_dssp SCSEEEEEEETTTCSSGGGHHHHHHHHHHCT-T-------SEEEEEEECTTSCTTTHH
T ss_pred cCCEEEEEEECCCCcchhhhHHHHHHHHhcC-C-------CCEEEEEECcCCCCccch
Confidence 9999999999999999876555444444333 2 588999999999876554
No 137
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=99.36 E-value=1.6e-12 Score=105.13 Aligned_cols=124 Identities=14% Similarity=-0.052 Sum_probs=85.9
Q ss_pred eeeEEE-EeCCCCc---eeEeeeccCCC----cccCcceeeeeEEEEEecCCCee--eeCCCchhch----------hhh
Q psy15036 42 FNFGTQ-LGRRGIP---LLKHLKYLGTG----THGKTVGIVFPAISVTYSIGPRY--FRFPLVSRFL----------SLT 101 (179)
Q Consensus 42 ~~~Kiv-lG~~gvG---~~~~~~~~~~~----~~~~Ti~~~~~~k~v~~~~~~~i--wDt~G~e~~~----------~~~ 101 (179)
..-+|. +|.+||| ++..+.+.... ....|.. .....+..+.+..+ |||+|+.++. ...
T Consensus 9 ~~g~v~ivG~~nvGKSTLin~l~g~~~~i~s~~~~tT~~--~~~~~~~~~~~~~i~lvDTPG~~~~~~~~~l~~~~~~~~ 86 (308)
T 3iev_A 9 KVGYVAIVGKPNVGKSTLLNNLLGTKVSIISPKAGTTRM--RVLGVKNIPNEAQIIFLDTPGIYEPKKSDVLGHSMVEIA 86 (308)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCS--CEEEEEEETTTEEEEEEECCCCCCCCTTCHHHHHHHHHH
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCccccCCCCCceee--EEEEEEecCCCCeEEEEECcCCCccccchhHHHHHHHHH
Confidence 356675 9999999 66665543222 1122222 11122222202334 9999996544 667
Q ss_pred hhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCCCCCCCHHHHHHHHhhh
Q psy15036 102 TGLYRGTMGFLLIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQRCREVVTPDQIMFGSTQ 176 (179)
Q Consensus 102 ~~~~~~~~~vilvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~~r~Vs~~e~~~~a~~~ 176 (179)
..+++.+|++++|+|.++..++.....|++.+.+. + .|+++|+||+|+.+.+....+...++++..
T Consensus 87 ~~~l~~aD~il~VvD~~~~~~~~~~~~~~~~l~~~---~------~pvilV~NK~Dl~~~~~~~~~~~~~l~~~~ 152 (308)
T 3iev_A 87 KQSLEEADVILFMIDATEGWRPRDEEIYQNFIKPL---N------KPVIVVINKIDKIGPAKNVLPLIDEIHKKH 152 (308)
T ss_dssp HHHHHHCSEEEEEEETTTBSCHHHHHHHHHHTGGG---C------CCEEEEEECGGGSSSGGGGHHHHHHHHHHC
T ss_pred HHHhhcCCEEEEEEeCCCCCCchhHHHHHHHHHhc---C------CCEEEEEECccCCCCHHHHHHHHHHHHHhc
Confidence 78899999999999999999999998888887762 2 588899999999755677777777777664
No 138
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=99.35 E-value=4.4e-12 Score=99.57 Aligned_cols=113 Identities=11% Similarity=0.002 Sum_probs=70.1
Q ss_pred eeeEEE-EeCCCCc---eeEeeecc--CCCcccCc-ceeeeeEEEEEecCCCee--eeCCCchhchh-----------hh
Q psy15036 42 FNFGTQ-LGRRGIP---LLKHLKYL--GTGTHGKT-VGIVFPAISVTYSIGPRY--FRFPLVSRFLS-----------LT 101 (179)
Q Consensus 42 ~~~Kiv-lG~~gvG---~~~~~~~~--~~~~~~~T-i~~~~~~k~v~~~~~~~i--wDt~G~e~~~~-----------~~ 101 (179)
..+||+ +|..|+| ++..+.+. +...+.++ +..+.....+..+ +..+ |||+|+..+.. ..
T Consensus 21 ~~~~I~lvG~~g~GKStl~n~l~~~~~~~~~~~~~~~t~~~~~~~~~~~-~~~i~iiDTpG~~~~~~~~~~~~~~i~~~~ 99 (260)
T 2xtp_A 21 SELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSWG-NREIVIIDTPDMFSWKDHCEALYKEVQRCY 99 (260)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHTSCCSCCCTTSCCCCCSCEEEEEEET-TEEEEEEECCGGGGSSCCCHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceeeeeEEEEEEeC-CCEEEEEECcCCCCCCCCHHHHHHHHHHHH
Confidence 468997 9999999 55555522 34444443 3334444556667 7777 99999876532 22
Q ss_pred hhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCC
Q psy15036 102 TGLYRGTMGFLLIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQR 160 (179)
Q Consensus 102 ~~~~~~~~~vilvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~ 160 (179)
..+++++|++|+|||+++..... ..++..+.+..+.. ...|++++++||+|+.+
T Consensus 100 ~~~~~~~d~il~V~d~~~~~~~~--~~~~~~l~~~~~~~---~~~~~i~vv~nK~Dl~~ 153 (260)
T 2xtp_A 100 LLSAPGPHVLLLVTQLGRYTSQD--QQAAQRVKEIFGED---AMGHTIVLFTHKEDLNG 153 (260)
T ss_dssp HHHTTCCSEEEEEEETTCCCHHH--HHHHHHHHHHHCGG---GGGGEEEEEECGGGGTT
T ss_pred HhcCCCCcEEEEEEeCCCCCHHH--HHHHHHHHHHhCch---hhccEEEEEEcccccCC
Confidence 33788999999999998622221 22223344333221 01167777778999975
No 139
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=99.28 E-value=1.1e-11 Score=100.09 Aligned_cols=110 Identities=10% Similarity=0.057 Sum_probs=70.6
Q ss_pred eeeEEE-EeCCCCc---eeEeeeccCCC--ccc-CcceeeeeEEEEEecCCCee--eeCCCchh--------chhhhhhh
Q psy15036 42 FNFGTQ-LGRRGIP---LLKHLKYLGTG--THG-KTVGIVFPAISVTYSIGPRY--FRFPLVSR--------FLSLTTGL 104 (179)
Q Consensus 42 ~~~Kiv-lG~~gvG---~~~~~~~~~~~--~~~-~Ti~~~~~~k~v~~~~~~~i--wDt~G~e~--------~~~~~~~~ 104 (179)
...+|+ +|.+||| ++..+.+.... ... .|.. ......+..+ +.++ |||+|+.+ +......+
T Consensus 6 ~~g~V~ivG~~nvGKSTLln~l~g~~~~ivs~~~~tTr-~~i~~i~~~~-~~~l~l~DTpG~~~~~~~l~~~~~~~~~~~ 83 (301)
T 1wf3_A 6 YSGFVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTR-KRLRGILTEG-RRQIVFVDTPGLHKPMDALGEFMDQEVYEA 83 (301)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCC-SCEEEEEEET-TEEEEEEECCCCCCCCSHHHHHHHHHHHHH
T ss_pred cCCEEEEECCCCCCHHHHHHHHhCCceeeecCCCCcee-EEEEEEEEeC-CcEEEEecCccccchhhHHHHHHHHHHHHH
Confidence 345676 9999999 66555533211 111 1221 1112233344 5555 99999876 55667788
Q ss_pred hcCCcEEEEEEeCCChhhHHHHHHHH-HHHHHHhCCccCccccceEEEEeeCCCcCCCC
Q psy15036 105 YRGTMGFLLIFDVTNENSFKDVEKWL-LQIKVMDGALFTHFELQIVFMRGCLELLQRCR 162 (179)
Q Consensus 105 ~~~~~~vilvyDit~~~Sf~~l~~w~-~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~~r 162 (179)
++++|++++|||.+++.+.. ..|+ +.+.+..+ + .|+++|+||+|+.+.+
T Consensus 84 l~~ad~il~VvD~~~~~~~~--~~~i~~~l~~~~~-~------~p~ilV~NK~Dl~~~~ 133 (301)
T 1wf3_A 84 LADVNAVVWVVDLRHPPTPE--DELVARALKPLVG-K------VPILLVGNKLDAAKYP 133 (301)
T ss_dssp TSSCSEEEEEEETTSCCCHH--HHHHHHHHGGGTT-T------SCEEEEEECGGGCSSH
T ss_pred HhcCCEEEEEEECCCCCChH--HHHHHHHHHhhcC-C------CCEEEEEECcccCCch
Confidence 99999999999999875554 3554 44544322 2 5889999999997543
No 140
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=99.27 E-value=1.1e-11 Score=98.13 Aligned_cols=121 Identities=7% Similarity=-0.085 Sum_probs=76.1
Q ss_pred eeeEEE-EeCCCCc---eeEeeeccCCCcccCcceee--eeEEEEEecCCCee--eeCCCchhchhhhhh-------h--
Q psy15036 42 FNFGTQ-LGRRGIP---LLKHLKYLGTGTHGKTVGIV--FPAISVTYSIGPRY--FRFPLVSRFLSLTTG-------L-- 104 (179)
Q Consensus 42 ~~~Kiv-lG~~gvG---~~~~~~~~~~~~~~~Ti~~~--~~~k~v~~~~~~~i--wDt~G~e~~~~~~~~-------~-- 104 (179)
..+||+ +|..|+| ++..+.+.......++.+.. .....+..+ +..+ |||+|++++..+... |
T Consensus 38 ~~~~I~vvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~-~~~l~iiDTpG~~~~~~~~~~~~~~i~~~~~ 116 (270)
T 1h65_A 38 NSLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRSRA-GFTLNIIDTPGLIEGGYINDMALNIIKSFLL 116 (270)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSSCCCSSCEEEEEEET-TEEEEEEECCCSEETTEECHHHHHHHHHHTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeeEEEEEeeC-CeEEEEEECCCCCCCccchHHHHHHHHHHhh
Confidence 478997 9999999 55555432211112222222 222233444 5555 999999877543321 2
Q ss_pred hcCCcEEEEEEeCCChhhHHHH-HHHHHHHHHHhCCccCccccceEEEEeeCCCcCCCCCCCHHH
Q psy15036 105 YRGTMGFLLIFDVTNENSFKDV-EKWLLQIKVMDGALFTHFELQIVFMRGCLELLQRCREVVTPD 168 (179)
Q Consensus 105 ~~~~~~vilvyDit~~~Sf~~l-~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~~r~Vs~~e 168 (179)
.+.+|++++|||++.. +|... ..|++.+.+..+... ..|+++|+||+|+...+.++.++
T Consensus 117 ~~~~d~il~v~~~d~~-~~~~~~~~~~~~l~~~~~~~~----~~~iivV~nK~Dl~~~~~~~~~~ 176 (270)
T 1h65_A 117 DKTIDVLLYVDRLDAY-RVDNLDKLVAKAITDSFGKGI----WNKAIVALTHAQFSPPDGLPYDE 176 (270)
T ss_dssp TCEECEEEEEEESSCC-CCCHHHHHHHHHHHHHHCGGG----GGGEEEEEECCSCCCGGGCCHHH
T ss_pred cCCCCEEEEEEeCCCC-cCCHHHHHHHHHHHHHhCccc----ccCEEEEEECcccCCcCCCCHHH
Confidence 3479999999999764 46554 488888877654320 13788999999997766666554
No 141
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.27 E-value=6.4e-13 Score=109.84 Aligned_cols=125 Identities=14% Similarity=0.141 Sum_probs=74.4
Q ss_pred ceeeEEE-EeCCCCc---eeEeee--ccCCCcc--------cCcceeeeeEEEEEecCCCee----eeCCCc-------h
Q psy15036 41 SFNFGTQ-LGRRGIP---LLKHLK--YLGTGTH--------GKTVGIVFPAISVTYSIGPRY----FRFPLV-------S 95 (179)
Q Consensus 41 ~~~~Kiv-lG~~gvG---~~~~~~--~~~~~~~--------~~Ti~~~~~~k~v~~~~~~~i----wDt~G~-------e 95 (179)
.+.+||+ +|+.|+| ++..+. ..+...+ .+|++.++....+..+ +..+ |||+|+ +
T Consensus 35 ~~~~~I~vvG~~g~GKSTLln~L~~~~~~~~~~~~~~~~~~~~ti~~~~~~~~~~~~-~~~~~l~i~DTpG~gd~~~~~e 113 (361)
T 2qag_A 35 GFEFTLMVVGESGLGKSTLINSLFLTDLYPERVIPGAAEKIERTVQIEASTVEIEER-GVKLRLTVVDTPGYGDAINCRD 113 (361)
T ss_dssp CCEECEEECCCTTSCHHHHHHHHTTCCC---------------CEEEEEEEEC-----CEEEEEEEEC------------
T ss_pred CCCEEEEEEcCCCCCHHHHHHHHhCCCCCCCCcccCCCcccCCceeEEEEEEEeecC-CcccceEEEEeccccccCccHH
Confidence 4578887 9999999 444432 2233322 3677766554444444 5432 999999 8
Q ss_pred hchhhhh-------hhhcCCcEE-----------EEEEeCCC-hhhHHHHH-HHHHHHHHHhCCccCccccceEEEEeeC
Q psy15036 96 RFLSLTT-------GLYRGTMGF-----------LLIFDVTN-ENSFKDVE-KWLLQIKVMDGALFTHFELQIVFMRGCL 155 (179)
Q Consensus 96 ~~~~~~~-------~~~~~~~~v-----------ilvyDit~-~~Sf~~l~-~w~~~i~~~~~~~~~~~~~~~iilvGnK 155 (179)
+|..+.. .|+++++++ +++|++++ ..++..+. .|++.+ ... .|+|+|+||
T Consensus 114 ~~~~i~~~i~~~~~~yl~~~~~~~r~~~~d~rv~~~vy~I~~~~~~l~~~d~~~~~~l----~~~------~piIlV~NK 183 (361)
T 2qag_A 114 CFKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPLDVAFMKAI----HNK------VNIVPVIAK 183 (361)
T ss_dssp --CCTHHHHHHHHHHHHHHHTCSCCC-CCCCCCCEEEEEECSSSSSCCHHHHHHHHHT----CS-------SCEEEEEEC
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhccccccCCceEEEEEEEecCCCCcchhHHHHHHHh----ccC------CCEEEEEEC
Confidence 8888877 888877665 48888887 77788775 455443 233 688999999
Q ss_pred CCcCCCCCCCH--HHHHHHHhhh
Q psy15036 156 ELLQRCREVVT--PDQIMFGSTQ 176 (179)
Q Consensus 156 ~Dl~~~r~Vs~--~e~~~~a~~~ 176 (179)
+|+...+++.. +++.++++++
T Consensus 184 ~Dl~~~~ev~~~k~~i~~~~~~~ 206 (361)
T 2qag_A 184 ADTLTLKERERLKKRILDEIEEH 206 (361)
T ss_dssp CSSSCHHHHHHHHHHHHHHTTCC
T ss_pred CCCCCHHHHHHHHHHHHHHHHHC
Confidence 99987776665 6777776654
No 142
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=99.26 E-value=1.6e-11 Score=105.05 Aligned_cols=88 Identities=6% Similarity=-0.137 Sum_probs=57.3
Q ss_pred EEEEecCCCee--eeCCCchhchhhhhhhhcCCcEEEEEEeCCChhhHHHH--HHHHHH---HHHHhCCccCccccceEE
Q psy15036 78 ISVTYSIGPRY--FRFPLVSRFLSLTTGLYRGTMGFLLIFDVTNENSFKDV--EKWLLQ---IKVMDGALFTHFELQIVF 150 (179)
Q Consensus 78 k~v~~~~~~~i--wDt~G~e~~~~~~~~~~~~~~~vilvyDit~~~Sf~~l--~~w~~~---i~~~~~~~~~~~~~~~ii 150 (179)
..+... +..+ |||+|+++|......+++.+|++|+|+|.++.+++..+ ..|..+ +...... +++|
T Consensus 104 ~~~~~~-~~~~~iiDTPG~~~f~~~~~~~~~~aD~~llVvDa~~g~~~~~~~~~~qt~e~~~~~~~~~~-------~~iI 175 (483)
T 3p26_A 104 SHFSTH-RANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSLGI-------HNLI 175 (483)
T ss_dssp EEEECS-SCEEEEECCCCCGGGHHHHHHHHTTCSEEEEEEECCC------CCCCHHHHHHHHHHHHTTC-------CCEE
T ss_pred EEEecC-CceEEEEECCCcHHHHHHHHHhhhhCCEEEEEEECCCCccccccchhhhHHHHHHHHHHcCC-------CcEE
Confidence 345555 5666 99999999999999999999999999999998766542 122222 2222222 4688
Q ss_pred EEeeCCCcCCCCCCCHHHHHHHH
Q psy15036 151 MRGCLELLQRCREVVTPDQIMFG 173 (179)
Q Consensus 151 lvGnK~Dl~~~r~Vs~~e~~~~a 173 (179)
+|+||+|+.+.++...++..+.+
T Consensus 176 vviNK~Dl~~~~~~~~~~i~~~~ 198 (483)
T 3p26_A 176 IAMNKMDNVDWSQQRFEEIKSKL 198 (483)
T ss_dssp EEEECGGGGTTCHHHHHHHHHHH
T ss_pred EEEECcCcccchHHHHHHHHHHH
Confidence 99999999775555545444433
No 143
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.24 E-value=1.5e-11 Score=103.89 Aligned_cols=105 Identities=14% Similarity=0.035 Sum_probs=67.6
Q ss_pred EEE-EeCCCCc---eeEeeeccCC--CcccCcceeeeeEEEEEecCCCee--eeCCCchh---------chhhhhhhhcC
Q psy15036 45 GTQ-LGRRGIP---LLKHLKYLGT--GTHGKTVGIVFPAISVTYSIGPRY--FRFPLVSR---------FLSLTTGLYRG 107 (179)
Q Consensus 45 Kiv-lG~~gvG---~~~~~~~~~~--~~~~~Ti~~~~~~k~v~~~~~~~i--wDt~G~e~---------~~~~~~~~~~~ 107 (179)
||+ +|.++|| ++.++.+... ....|.+..+.....+.++ +..+ |||+|++. +......++++
T Consensus 3 ~v~ivG~pnvGKStL~nrl~~~~~~~v~~~~g~T~d~~~~~~~~~-~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~~ 81 (439)
T 1mky_A 3 TVLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWY-GKTFKLVDTCGVFDNPQDIISQKMKEVTLNMIRE 81 (439)
T ss_dssp EEEEECCTTSSHHHHHHHHHC--------------CCSEEEEEET-TEEEEEEECTTTTSSGGGCCCHHHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCceecCCCCCccceeeEEEEEC-CeEEEEEECCCccccccchHHHHHHHHHHHHHHh
Confidence 676 9999999 6666653321 1223333345556677778 8777 99999764 34566789999
Q ss_pred CcEEEEEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCC
Q psy15036 108 TMGFLLIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQR 160 (179)
Q Consensus 108 ~~~vilvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~ 160 (179)
+|++++|||.++..++.. .|+....+.. . .|++||+||+|+.+
T Consensus 82 ad~il~V~D~~~~~~~~d--~~i~~~l~~~-~-------~p~ilv~NK~D~~~ 124 (439)
T 1mky_A 82 ADLVLFVVDGKRGITKED--ESLADFLRKS-T-------VDTILVANKAENLR 124 (439)
T ss_dssp CSEEEEEEETTTCCCHHH--HHHHHHHHHH-T-------CCEEEEEESCCSHH
T ss_pred CCEEEEEEECCCCCCHHH--HHHHHHHHHc-C-------CCEEEEEeCCCCcc
Confidence 999999999988666543 2333322222 2 47889999999854
No 144
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=99.24 E-value=2.7e-12 Score=108.44 Aligned_cols=96 Identities=7% Similarity=-0.077 Sum_probs=67.7
Q ss_pred EEEecCCCee--eeCCCchhchhhhhhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCC
Q psy15036 79 SVTYSIGPRY--FRFPLVSRFLSLTTGLYRGTMGFLLIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLE 156 (179)
Q Consensus 79 ~v~~~~~~~i--wDt~G~e~~~~~~~~~~~~~~~vilvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~ 156 (179)
.+... +..+ |||+|+++|......+++.+|++|+|+|.++ .+|+++..|..+.++..... .....+++++|+||+
T Consensus 78 ~~~~~-~~~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvDa~~-gsfe~~~~~~~qt~~~~~~~-~~~~~~~iivviNK~ 154 (435)
T 1jny_A 78 RFETK-KYFFTIIDAPGHRDFVKNMITGASQADAAILVVSAKK-GEYEAGMSVEGQTREHIILA-KTMGLDQLIVAVNKM 154 (435)
T ss_dssp EEECS-SCEEEECCCSSSTTHHHHHHHTSSCCSEEEEEEECST-THHHHHHSTTCHHHHHHHHH-HHTTCTTCEEEEECG
T ss_pred EEecC-CeEEEEEECCCcHHHHHHHHhhhhhcCEEEEEEECCC-CccccccccchHHHHHHHHH-HHcCCCeEEEEEEcc
Confidence 44555 5666 9999999999888899999999999999999 89998877766655432100 000114678899999
Q ss_pred CcCCC--C----CCCHHHHHHHHhhhC
Q psy15036 157 LLQRC--R----EVVTPDQIMFGSTQS 177 (179)
Q Consensus 157 Dl~~~--r----~Vs~~e~~~~a~~~~ 177 (179)
|+.+. + +...++.++++++.+
T Consensus 155 Dl~~~~~~~~~~~~~~~~i~~~~~~~~ 181 (435)
T 1jny_A 155 DLTEPPYDEKRYKEIVDQVSKFMRSYG 181 (435)
T ss_dssp GGSSSTTCHHHHHHHHHHHHHHHHHTT
T ss_pred cCCCccccHHHHHHHHHHHHHHHHHcC
Confidence 99752 1 223456777766543
No 145
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=99.24 E-value=1.2e-11 Score=101.53 Aligned_cols=121 Identities=11% Similarity=0.058 Sum_probs=81.6
Q ss_pred EEE-EeCCCCc---eeEeeeccC--CCccc-CcceeeeeEEEEEecCC-Cee--eeCCCch----hchhhhhhhhcC---
Q psy15036 45 GTQ-LGRRGIP---LLKHLKYLG--TGTHG-KTVGIVFPAISVTYSIG-PRY--FRFPLVS----RFLSLTTGLYRG--- 107 (179)
Q Consensus 45 Kiv-lG~~gvG---~~~~~~~~~--~~~~~-~Ti~~~~~~k~v~~~~~-~~i--wDt~G~e----~~~~~~~~~~~~--- 107 (179)
+|+ +|.++|| ++..+.... ...+. .|+...+ ..+.++ + ..+ ||++|+. ++..+...|+++
T Consensus 160 ~V~lvG~~nvGKSTLln~L~~~~~~i~~~~ftTl~p~~--g~v~~~-~~~~~~l~DtPG~i~~a~~~~~l~~~fl~~i~~ 236 (342)
T 1lnz_A 160 DVGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNL--GMVETD-DGRSFVMADLPGLIEGAHQGVGLGHQFLRHIER 236 (342)
T ss_dssp CEEEESSTTSSHHHHHHHSEEECCEESSTTSSCCCCCE--EEEECS-SSCEEEEEEHHHHHHHTTCTTTTHHHHHHHHHH
T ss_pred eeeeeCCCCCCHHHHHHHHHcCCCccccCCccccCceE--EEEEeC-CCceEEEecCCCCcccccccchhHHHHHHHHHh
Confidence 465 9999999 544444221 11222 3443333 245666 4 555 9999964 345566777765
Q ss_pred CcEEEEEEeCCC---hhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCCCCCCCHHHHHHHHhhh
Q psy15036 108 TMGFLLIFDVTN---ENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQRCREVVTPDQIMFGSTQ 176 (179)
Q Consensus 108 ~~~vilvyDit~---~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~~r~Vs~~e~~~~a~~~ 176 (179)
++++|+|+|+++ +++++.+..|+.++..+.+.. ...|+++|+||+|+...+ ++.++++++.
T Consensus 237 ~d~ll~VvD~s~~~~~~~~~~~~~~~~eL~~~~~~l----~~~p~ilV~NK~Dl~~~~----e~~~~l~~~l 300 (342)
T 1lnz_A 237 TRVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRL----TERPQIIVANKMDMPEAA----ENLEAFKEKL 300 (342)
T ss_dssp CCEEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSST----TTSCBCBEEECTTSTTHH----HHHHHHHHHC
T ss_pred ccEEEEEEECCcccccChHHHHHHHHHHHHHhhhhh----cCCCEEEEEECccCCCCH----HHHHHHHHHh
Confidence 999999999999 899999999999998875321 115788999999996532 3455665543
No 146
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=99.23 E-value=3.8e-11 Score=98.83 Aligned_cols=122 Identities=13% Similarity=-0.042 Sum_probs=81.2
Q ss_pred eeeEEE-EeCCCCc---eeEeeeccCCC--c-ccCcceeeeeEEEEEecCCCee--eeCCCchhch---------hhhhh
Q psy15036 42 FNFGTQ-LGRRGIP---LLKHLKYLGTG--T-HGKTVGIVFPAISVTYSIGPRY--FRFPLVSRFL---------SLTTG 103 (179)
Q Consensus 42 ~~~Kiv-lG~~gvG---~~~~~~~~~~~--~-~~~Ti~~~~~~k~v~~~~~~~i--wDt~G~e~~~---------~~~~~ 103 (179)
..++|+ +|..||| ++..+.+.... . ...|.+.. ...+... +..+ |||+|...+. .....
T Consensus 166 ~~~~v~lvG~~gvGKSTLin~L~~~~~~~~~~~~~t~~~~--~~~~~~~-~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~ 242 (357)
T 2e87_A 166 EIPTVVIAGHPNVGKSTLLKALTTAKPEIASYPFTTRGIN--VGQFEDG-YFRYQIIDTPGLLDRPISERNEIEKQAILA 242 (357)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHCSSCCEEECCTTCSSCEE--EEEEEET-TEEEEEEECTTTSSSCSTTSCHHHHHHHHG
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCeeecee--EEEEEec-CceEEEEeCCCccccchhhhhHHHHHHHHH
Confidence 457887 9999999 55555432211 1 12233322 2334444 5555 9999985432 11224
Q ss_pred hhcCCcEEEEEEeCCChh--hHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCCCCCCCHHHHHHHHhh
Q psy15036 104 LYRGTMGFLLIFDVTNEN--SFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQRCREVVTPDQIMFGST 175 (179)
Q Consensus 104 ~~~~~~~vilvyDit~~~--Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~~r~Vs~~e~~~~a~~ 175 (179)
+...+|++++|+|+++.. +++....|+..+...... .|+++|+||+|+.+.+.+ +++.+++++
T Consensus 243 ~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~~-------~piilV~NK~Dl~~~~~~--~~~~~~~~~ 307 (357)
T 2e87_A 243 LRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFKD-------LPFLVVINKIDVADEENI--KRLEKFVKE 307 (357)
T ss_dssp GGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTTT-------SCEEEEECCTTTCCHHHH--HHHHHHHHH
T ss_pred HHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcCC-------CCEEEEEECcccCChHHH--HHHHHHHHh
Confidence 566799999999999988 789889999999876543 588999999999765443 456666554
No 147
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.23 E-value=5.9e-12 Score=106.32 Aligned_cols=107 Identities=7% Similarity=-0.040 Sum_probs=63.9
Q ss_pred eEEE-EeCCCCc---eeEeeeccCCCcccCcceee--eeEEEEEecCCCee--eeCCCch--------hchhhhhhhhcC
Q psy15036 44 FGTQ-LGRRGIP---LLKHLKYLGTGTHGKTVGIV--FPAISVTYSIGPRY--FRFPLVS--------RFLSLTTGLYRG 107 (179)
Q Consensus 44 ~Kiv-lG~~gvG---~~~~~~~~~~~~~~~Ti~~~--~~~k~v~~~~~~~i--wDt~G~e--------~~~~~~~~~~~~ 107 (179)
.||+ +|.++|| ++.++.+.......++.|.+ .....+..+ +..+ |||+|++ ++......++++
T Consensus 4 ~~V~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~T~d~~~~~~~~~-~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~ 82 (436)
T 2hjg_A 4 PVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWL-NYDFNLIDTGGIDIGDEPFLAQIRQQAEIAMDE 82 (436)
T ss_dssp CEEEEECSTTSSHHHHHHHHEEEECC-----------CEEEECTTC-SSCCEEEC---------CHHHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCceeecCCCCCccceEEEEEEEC-CceEEEEECCCCCCcchhHHHHHHHHHHHHHHh
Confidence 5787 9999999 66666543333334455543 223344445 5555 9999986 677788889999
Q ss_pred CcEEEEEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCCC
Q psy15036 108 TMGFLLIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQRC 161 (179)
Q Consensus 108 ~~~vilvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~~ 161 (179)
+|++|+|+|.++..++.. .|+..+.+. .+ .|++||+||+|+.+.
T Consensus 83 ad~il~vvD~~~~~~~~d--~~~~~~l~~--~~------~pvilv~NK~D~~~~ 126 (436)
T 2hjg_A 83 ADVIIFMVNGREGVTAAD--EEVAKILYR--TK------KPVVLAVNKLDNTEM 126 (436)
T ss_dssp CSEEEEEEETTTCSCHHH--HHHHHHHTT--CC------SCEEEEEECCCC---
T ss_pred CCEEEEEEeCCCCCCHHH--HHHHHHHHH--cC------CCEEEEEECccCccc
Confidence 999999999998877654 344443322 22 578999999999653
No 148
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=99.21 E-value=1.7e-11 Score=104.89 Aligned_cols=115 Identities=10% Similarity=-0.060 Sum_probs=80.9
Q ss_pred eEEE-EeCCCCc---eeEeeecc---CCCcccCcceeeeeEEEEEecCCCee--eeCCCch-hchh--------hhhhhh
Q psy15036 44 FGTQ-LGRRGIP---LLKHLKYL---GTGTHGKTVGIVFPAISVTYSIGPRY--FRFPLVS-RFLS--------LTTGLY 105 (179)
Q Consensus 44 ~Kiv-lG~~gvG---~~~~~~~~---~~~~~~~Ti~~~~~~k~v~~~~~~~i--wDt~G~e-~~~~--------~~~~~~ 105 (179)
+||+ +|.++|| +++.+... ....+ |....++..+.+.++ +..+ |||+|+. ++.. ....++
T Consensus 244 ~kV~ivG~pnvGKSSLln~L~~~~~a~vs~~-~gTT~d~~~~~i~~~-g~~~~l~DTaG~~~~~~~~ve~~gi~~~~~~~ 321 (482)
T 1xzp_A 244 LRMVIVGKPNVGKSTLLNRLLNEDRAIVTDI-PGTTRDVISEEIVIR-GILFRIVDTAGVRSETNDLVERLGIERTLQEI 321 (482)
T ss_dssp EEEEEECCHHHHTCHHHHHHHHHTBCCCCCS-SCCSSCSCCEEEEET-TEEEEEEESSCCCSSCCTTCCCCCHHHHHHHH
T ss_pred CEEEEECcCCCcHHHHHHHHHCCCCCccCCC-CCeeeeeEEEEEecC-CeEEEEEECCCccccchhhHHHHHHHHHHHHh
Confidence 8997 9999999 66555532 12233 323335556777888 8887 9999998 6542 245689
Q ss_pred cCCcEEEEEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCCCCCCCHHHHHHHHh
Q psy15036 106 RGTMGFLLIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQRCREVVTPDQIMFGS 174 (179)
Q Consensus 106 ~~~~~vilvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~~r~Vs~~e~~~~a~ 174 (179)
+.+|++|+|||++++.+++...-| +.+ .. .|+++|+||+|+.+ .++.++..+++.
T Consensus 322 ~~aD~vl~VvD~s~~~s~~~~~il-~~l----~~-------~piivV~NK~DL~~--~~~~~~~~~~~~ 376 (482)
T 1xzp_A 322 EKADIVLFVLDASSPLDEEDRKIL-ERI----KN-------KRYLVVINKVDVVE--KINEEEIKNKLG 376 (482)
T ss_dssp HHCSEEEEEEETTSCCCHHHHHHH-HHH----TT-------SSEEEEEEECSSCC--CCCHHHHHHHHT
T ss_pred hcccEEEEEecCCCCCCHHHHHHH-HHh----cC-------CCEEEEEECccccc--ccCHHHHHHHhc
Confidence 999999999999999998775433 222 22 47889999999975 356666666543
No 149
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=99.21 E-value=1.8e-11 Score=103.62 Aligned_cols=84 Identities=7% Similarity=-0.071 Sum_probs=57.8
Q ss_pred cceeeeeEEEEEecCCCee--eeCCCchhchhhhhhhhcCCcEEEEEEeCCChh---hHHHHHHHHHHHHHHhCCccCcc
Q psy15036 70 TVGIVFPAISVTYSIGPRY--FRFPLVSRFLSLTTGLYRGTMGFLLIFDVTNEN---SFKDVEKWLLQIKVMDGALFTHF 144 (179)
Q Consensus 70 Ti~~~~~~k~v~~~~~~~i--wDt~G~e~~~~~~~~~~~~~~~vilvyDit~~~---Sf~~l~~w~~~i~~~~~~~~~~~ 144 (179)
.+.++.....+..+ +..+ |||+|+++|......+++.+|++|+|+|.++.. +|+...++.+.+.......
T Consensus 80 GiTid~~~~~~~~~-~~~~~iiDTPGh~~f~~~~~~~~~~aD~~ilVVDa~~g~~e~~~~~~~qt~e~l~~~~~~~---- 154 (439)
T 3j2k_7 80 GKTVEVGRAYFETE-KKHFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTAG---- 154 (439)
T ss_pred CceEEEeEEEEecC-CeEEEEEECCChHHHHHHHHhhHhhCCEEEEEEECCCCccccccCCCchHHHHHHHHHHcC----
Confidence 34445555566666 6666 999999999998889999999999999998853 2332223333333222222
Q ss_pred ccceEEEEeeCCCcC
Q psy15036 145 ELQIVFMRGCLELLQ 159 (179)
Q Consensus 145 ~~~~iilvGnK~Dl~ 159 (179)
.+++|+|+||+|+.
T Consensus 155 -v~~iIvviNK~Dl~ 168 (439)
T 3j2k_7 155 -VKHLIVLINKMDDP 168 (439)
T ss_pred -CCeEEEEeecCCCc
Confidence 14588999999984
No 150
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=99.20 E-value=7e-12 Score=95.59 Aligned_cols=112 Identities=13% Similarity=0.030 Sum_probs=70.3
Q ss_pred ceeeEEE-EeCCCCc---eeEeeeccC-CCcccCcceeeeeE--EEEE-ecCCCee--eeCCC----------chhchhh
Q psy15036 41 SFNFGTQ-LGRRGIP---LLKHLKYLG-TGTHGKTVGIVFPA--ISVT-YSIGPRY--FRFPL----------VSRFLSL 100 (179)
Q Consensus 41 ~~~~Kiv-lG~~gvG---~~~~~~~~~-~~~~~~Ti~~~~~~--k~v~-~~~~~~i--wDt~G----------~e~~~~~ 100 (179)
...+||+ +|..|+| ++..+.+.. .....++.+..... ..+. .+ +..+ |||+| ++.+..+
T Consensus 27 ~~~~~i~v~G~~~~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~l~DtpG~~~~~~~~~~~~~~~~~ 105 (223)
T 4dhe_A 27 TVQPEIAFAGRSNAGKSTAINVLCNQKRLAFASKTPGRTQHINYFSVGPAA-EPVAHLVDLPGYGYAEVPGAAKAHWEQL 105 (223)
T ss_dssp CCSCEEEEEESCHHHHHHHHHHHTTCSSSSCTTCCCCSCCCEEEEEESCTT-SCSEEEEECCCCCSSCCCSTHHHHHHHH
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCCcceeecCCCCcccceEEEEecCCC-CCcEEEEcCCCCCcccCChhhHHHHHHH
Confidence 3478997 9999999 665555332 12222222222221 2222 22 3444 99999 5677778
Q ss_pred hhhhhcC---CcEEEEEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCCCCC
Q psy15036 101 TTGLYRG---TMGFLLIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQRCRE 163 (179)
Q Consensus 101 ~~~~~~~---~~~vilvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~~r~ 163 (179)
...|++. +|++++|+|.++..+.. -..|+..+.+ .. .|+++|+||+|+...+.
T Consensus 106 ~~~~~~~~~~~d~vi~v~d~~~~~~~~-~~~~~~~l~~---~~------~p~i~v~nK~Dl~~~~~ 161 (223)
T 4dhe_A 106 LSSYLQTRPQLCGMILMMDARRPLTEL-DRRMIEWFAP---TG------KPIHSLLTKCDKLTRQE 161 (223)
T ss_dssp HHHHHHHCTTEEEEEEEEETTSCCCHH-HHHHHHHHGG---GC------CCEEEEEECGGGSCHHH
T ss_pred HHHHHhcCcCcCEEEEEEeCCCCCCHH-HHHHHHHHHh---cC------CCEEEEEeccccCChhh
Confidence 8888887 77899999998754422 2345555544 22 57889999999976433
No 151
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=99.16 E-value=1.1e-10 Score=91.47 Aligned_cols=113 Identities=13% Similarity=-0.001 Sum_probs=64.6
Q ss_pred eeeEEE-EeCCCCc---eeEeeeccC-CCcccCccee--eeeEEEEEecCCCee--eeCCCc--------hhchhhhhhh
Q psy15036 42 FNFGTQ-LGRRGIP---LLKHLKYLG-TGTHGKTVGI--VFPAISVTYSIGPRY--FRFPLV--------SRFLSLTTGL 104 (179)
Q Consensus 42 ~~~Kiv-lG~~gvG---~~~~~~~~~-~~~~~~Ti~~--~~~~k~v~~~~~~~i--wDt~G~--------e~~~~~~~~~ 104 (179)
..+||+ +|..||| ++..+.+.. .....++.+. ......+..+ +..+ |||+|. +++......+
T Consensus 20 ~~l~I~lvG~~g~GKSSlin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~-~~~i~liDTPG~~~~~~~~~~~~~~~i~~~ 98 (247)
T 3lxw_A 20 STRRLILVGRTGAGKSATGNSILGQRRFFSRLGATSVTRACTTGSRRWD-KCHVEVVDTPDIFSSQVSKTDPGCEERGHC 98 (247)
T ss_dssp CEEEEEEESSTTSSHHHHHHHHHTSCCC---------CCSCEEEEEEET-TEEEEEEECCSCSSTTHHHHSTTSHHHHHH
T ss_pred CceEEEEECCCCCcHHHHHHHHhCCCCccccCCCCCccccEEEEEEEEC-CcEEEEEECCCCCCCCCCcHHHHHHHHHHH
Confidence 478997 9999999 555554321 1111112111 2223445566 6666 999996 3333322223
Q ss_pred h----cCCcEEEEEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCC
Q psy15036 105 Y----RGTMGFLLIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQR 160 (179)
Q Consensus 105 ~----~~~~~vilvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~ 160 (179)
+ +++|++++|+|+++... .-..+++.+.+..+... ...|++|++||.||.+
T Consensus 99 ~~~~~~~~d~il~V~d~~~~~~--~~~~~~~~l~~~~~~~~---~~~~iilv~nK~Dl~~ 153 (247)
T 3lxw_A 99 YLLSAPGPHALLLVTQLGRFTA--QDQQAVRQVRDMFGEDV---LKWMVIVFTRKEDLAG 153 (247)
T ss_dssp HHHHTTCCSEEEEEEETTBCCH--HHHHHHHHHHHHHCGGG---GGGEEEEEECGGGGTT
T ss_pred HHhcCCCCCEEEEEEeCCCCCH--HHHHHHHHHHHHhChhh---hccEEEEEEchHhcCC
Confidence 3 89999999999985322 11334444544433210 1158899999999965
No 152
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=99.13 E-value=4.6e-11 Score=104.91 Aligned_cols=82 Identities=6% Similarity=-0.088 Sum_probs=55.9
Q ss_pred EEEEecCCCee--eeCCCchhchhhhhhhhcCCcEEEEEEeCCChh---hHHHHHHHHHHHHHHhCCccCccccceEEEE
Q psy15036 78 ISVTYSIGPRY--FRFPLVSRFLSLTTGLYRGTMGFLLIFDVTNEN---SFKDVEKWLLQIKVMDGALFTHFELQIVFMR 152 (179)
Q Consensus 78 k~v~~~~~~~i--wDt~G~e~~~~~~~~~~~~~~~vilvyDit~~~---Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilv 152 (179)
..+... +..+ |||+|+++|......+++.+|++|+|+|.++.. +|.....+.+.+....... .+++|||
T Consensus 238 ~~~~~~-~~~~~iiDTPG~e~f~~~~~~~~~~aD~~llVVDa~~g~~e~~~~~~~qt~e~l~~~~~lg-----i~~iIVV 311 (611)
T 3izq_1 238 SHFSTH-RANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSLG-----IHNLIIA 311 (611)
T ss_dssp CEEECS-SCEEEEEECCSSSCHHHHHTTTSSCCSEEEEEEECSHHHHHTTCCTTSHHHHHHHHHHTTT-----CCEEEEE
T ss_pred EEEecC-CceEEEEECCCCcccHHHHHHHHhhcCceEEEEECCCCcccccchhhhHHHHHHHHHHHcC-----CCeEEEE
Confidence 345556 6666 999999999999899999999999999998742 2222223333333222222 1568999
Q ss_pred eeCCCcCCCCCCC
Q psy15036 153 GCLELLQRCREVV 165 (179)
Q Consensus 153 GnK~Dl~~~r~Vs 165 (179)
+||+|+.+.++..
T Consensus 312 vNKiDl~~~~~~~ 324 (611)
T 3izq_1 312 MNKMDNVDWSQQR 324 (611)
T ss_dssp EECTTTTTTCHHH
T ss_pred EecccccchhHHH
Confidence 9999997644433
No 153
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.13 E-value=1.5e-10 Score=97.84 Aligned_cols=118 Identities=11% Similarity=-0.050 Sum_probs=73.1
Q ss_pred eeeEEE-EeCCCCc---eeEeeeccCC--CcccCcceeeeeEEEEEecCCCee--eeCCCchhchhh-----------h-
Q psy15036 42 FNFGTQ-LGRRGIP---LLKHLKYLGT--GTHGKTVGIVFPAISVTYSIGPRY--FRFPLVSRFLSL-----------T- 101 (179)
Q Consensus 42 ~~~Kiv-lG~~gvG---~~~~~~~~~~--~~~~~Ti~~~~~~k~v~~~~~~~i--wDt~G~e~~~~~-----------~- 101 (179)
..+||. +|.+||| +++.+.+... ....++...+.....+.++ |..+ |||+|+.++... .
T Consensus 179 ~~~kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~-g~~~~l~Dt~G~~~~~~~~~~~~e~~~~~~~ 257 (439)
T 1mky_A 179 DAIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFID-GRKYVFVDTAGLRRKSRVEPRTVEKYSNYRV 257 (439)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEET-TEEEEESSCSCC-----------CCSCCHHH
T ss_pred cCceEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEEC-CEEEEEEECCCCccccccchhhHHHHHHHHH
Confidence 458997 9999999 6666554321 1112222233444567788 8777 999998544322 2
Q ss_pred hhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCCCCCCCHHHHH
Q psy15036 102 TGLYRGTMGFLLIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQRCREVVTPDQI 170 (179)
Q Consensus 102 ~~~~~~~~~vilvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~~r~Vs~~e~~ 170 (179)
..+++.++++++|+|.++..+++.. .+...+.+ .. .|+++|+||+|+.+++.++.++..
T Consensus 258 ~~~i~~ad~vllv~d~~~~~~~~~~-~i~~~l~~---~~------~~~ilv~NK~Dl~~~~~~~~~~~~ 316 (439)
T 1mky_A 258 VDSIEKADVVVIVLDATQGITRQDQ-RMAGLMER---RG------RASVVVFNKWDLVVHREKRYDEFT 316 (439)
T ss_dssp HHHHHHCSEEEEEEETTTCCCHHHH-HHHHHHHH---TT------CEEEEEEECGGGSTTGGGCHHHHH
T ss_pred HHHHhhCCEEEEEEeCCCCCCHHHH-HHHHHHHH---cC------CCEEEEEECccCCCchhhHHHHHH
Confidence 3467889999999999988777653 22222222 12 588899999999877776666554
No 154
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.12 E-value=5.1e-10 Score=93.66 Aligned_cols=122 Identities=9% Similarity=0.023 Sum_probs=78.3
Q ss_pred eeeEEE-EeCCCCc---eeEeeec----cCCCcccC--cceeeeeEEEEEe-------------cC-C------Cee--e
Q psy15036 42 FNFGTQ-LGRRGIP---LLKHLKY----LGTGTHGK--TVGIVFPAISVTY-------------SI-G------PRY--F 89 (179)
Q Consensus 42 ~~~Kiv-lG~~gvG---~~~~~~~----~~~~~~~~--Ti~~~~~~k~v~~-------------~~-~------~~i--w 89 (179)
..++|+ +|..++| ++..+.+ .+..+..+ |+...+....+.. +. + ..+ |
T Consensus 7 ~~~~I~iiG~~d~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~ii 86 (408)
T 1s0u_A 7 AEVNIGMVGHVDHGKTSLTKALTGVWTDRHSEELRRGISIRLGYADCEIRKCPQCGTYTTKPRCPNCLAETEFLRRVSFV 86 (408)
T ss_dssp CCEEEEEESCTTSSHHHHHHHHHSCCCCC-------CCCCCCEEEEEEEEECTTTCCEESSSBCTTSCCBCEEEEEEEEE
T ss_pred CceEEEEEcCCCCCHHHHHHHHhCCccccCcccccCCcEEEecccccccccccccccccccccccccCcccccccEEEEE
Confidence 468997 9999999 5555542 23334444 7766654433321 10 1 233 9
Q ss_pred eCCCchhchhhhhhhhcCCcEEEEEEeCC----ChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCCCCC--
Q psy15036 90 RFPLVSRFLSLTTGLYRGTMGFLLIFDVT----NENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQRCRE-- 163 (179)
Q Consensus 90 Dt~G~e~~~~~~~~~~~~~~~vilvyDit----~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~~r~-- 163 (179)
||+|+++|..........+|++|+|+|.+ .+++++.+..| ... .. +|+++|+||+|+.+.+.
T Consensus 87 DtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~----~~l-~~-------~~iivv~NK~Dl~~~~~~~ 154 (408)
T 1s0u_A 87 DSPGHETLMATMLSGASLMDGAILVIAANEPCPQPQTKEHLMAL----EIL-GI-------DKIIIVQNKIDLVDEKQAE 154 (408)
T ss_dssp ECSSHHHHHHHHHTTCSCCSEEEEEEETTSCSSCHHHHHHHHHH----HHT-TC-------CCEEEEEECTTSSCTTTTT
T ss_pred ECCCHHHHHHHHHHhHhhCCEEEEEEECCCCCCCchhHHHHHHH----HHc-CC-------CeEEEEEEccCCCCHHHHH
Confidence 99999999776666777889999999998 46777766544 221 22 47889999999976443
Q ss_pred CCHHHHHHHHhh
Q psy15036 164 VVTPDQIMFGST 175 (179)
Q Consensus 164 Vs~~e~~~~a~~ 175 (179)
...+++++++++
T Consensus 155 ~~~~~i~~~l~~ 166 (408)
T 1s0u_A 155 ENYEQIKEFVKG 166 (408)
T ss_dssp THHHHHHHHHTT
T ss_pred HHHHHHHHHHhh
Confidence 345777777764
No 155
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=99.11 E-value=4.5e-11 Score=101.80 Aligned_cols=109 Identities=12% Similarity=-0.013 Sum_probs=67.5
Q ss_pred eeEEE-EeCCCCc---eeEeeecc-C-CCcccCcceeeeeEEEEEecCCCee--eeCCCchhchhhh--------hhhhc
Q psy15036 43 NFGTQ-LGRRGIP---LLKHLKYL-G-TGTHGKTVGIVFPAISVTYSIGPRY--FRFPLVSRFLSLT--------TGLYR 106 (179)
Q Consensus 43 ~~Kiv-lG~~gvG---~~~~~~~~-~-~~~~~~Ti~~~~~~k~v~~~~~~~i--wDt~G~e~~~~~~--------~~~~~ 106 (179)
.+||+ +|..+|| ++..+.+. + .....++...++..+.+.++ +..+ |||+|..++.... ..+++
T Consensus 224 ~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~-g~~v~liDT~G~~~~~~~ve~~gi~~~~~~~~ 302 (462)
T 3geh_A 224 GLKVAIVGRPNVGKSSLLNAWSQSDRAIVTDLPGTTRDVVESQLVVG-GIPVQVLDTAGIRETSDQVEKIGVERSRQAAN 302 (462)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHHBSCCSCCTTCCHHHHHHEEEET-TEEEEECC--------------------CCCC
T ss_pred CCEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCeeEEEEEEEEEEC-CEEEEEEECCccccchhHHHHHHHHHHhhhhh
Confidence 57897 9999999 55555432 1 12223444445555667778 8877 9999987665332 33688
Q ss_pred CCcEEEEEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCCCCCC
Q psy15036 107 GTMGFLLIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQRCREV 164 (179)
Q Consensus 107 ~~~~vilvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~~r~V 164 (179)
.+|++++|||.+++.++.. ..|++.+. . .|+++|+||+|+.+.+.+
T Consensus 303 ~aD~vl~VvD~s~~~~~~~-~~i~~~l~----~-------~piivV~NK~Dl~~~~~~ 348 (462)
T 3geh_A 303 TADLVLLTIDAATGWTTGD-QEIYEQVK----H-------RPLILVMNKIDLVEKQLI 348 (462)
T ss_dssp SCSEEEEEEETTTCSCHHH-HHHHHHHT----T-------SCEEEEEECTTSSCGGGS
T ss_pred cCCEEEEEeccCCCCCHHH-HHHHHhcc----C-------CcEEEEEECCCCCcchhh
Confidence 9999999999999877765 44555442 2 378899999999765544
No 156
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=99.11 E-value=1.3e-11 Score=105.26 Aligned_cols=101 Identities=10% Similarity=-0.041 Sum_probs=54.6
Q ss_pred cCcceeeeeEEEEEecCCCee--eeCCCchhchhhhhhhhcCCcEEEEEEeCCCh---hhHHHHHHHHHHHHHHhCCccC
Q psy15036 68 GKTVGIVFPAISVTYSIGPRY--FRFPLVSRFLSLTTGLYRGTMGFLLIFDVTNE---NSFKDVEKWLLQIKVMDGALFT 142 (179)
Q Consensus 68 ~~Ti~~~~~~k~v~~~~~~~i--wDt~G~e~~~~~~~~~~~~~~~vilvyDit~~---~Sf~~l~~w~~~i~~~~~~~~~ 142 (179)
..|++..+ ..+..+ +..+ |||+|+++|......+++.+|++|+|+|.++. +||++..+|.+.+.......
T Consensus 106 giTi~~~~--~~~~~~-~~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~e~sf~~~~qt~e~l~~~~~~~-- 180 (467)
T 1r5b_A 106 GKTVEVGR--AYFETE-HRRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLARTQG-- 180 (467)
T ss_dssp -------C--CEEECS-SEEEEECCCCC-----------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHHHTT--
T ss_pred CceEEeee--EEEecC-CeEEEEEECCCcHHHHHHHHhhcccCCEEEEEEeCCcCccccccCCCCcHHHHHHHHHHcC--
Confidence 34555433 245556 6666 99999999998888899999999999999986 56765555665554433232
Q ss_pred ccccceEEEEeeCCCcCCCC------CCCHHHHHHHHhhh
Q psy15036 143 HFELQIVFMRGCLELLQRCR------EVVTPDQIMFGSTQ 176 (179)
Q Consensus 143 ~~~~~~iilvGnK~Dl~~~r------~Vs~~e~~~~a~~~ 176 (179)
.|.+|+|+||+|+.+.. +...++..+++++.
T Consensus 181 ---vp~iivviNK~Dl~~~~~~~~~~~~i~~e~~~~l~~~ 217 (467)
T 1r5b_A 181 ---INHLVVVINKMDEPSVQWSEERYKECVDKLSMFLRRV 217 (467)
T ss_dssp ---CSSEEEEEECTTSTTCSSCHHHHHHHHHHHHHHHHHH
T ss_pred ---CCEEEEEEECccCCCccccHHHHHHHHHHHHHHHHHh
Confidence 13488999999995311 12234566666543
No 157
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=99.10 E-value=7.1e-11 Score=102.08 Aligned_cols=72 Identities=8% Similarity=-0.004 Sum_probs=57.8
Q ss_pred EEEEecCCCee--eeCCCchhchhhhhhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeC
Q psy15036 78 ISVTYSIGPRY--FRFPLVSRFLSLTTGLYRGTMGFLLIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCL 155 (179)
Q Consensus 78 k~v~~~~~~~i--wDt~G~e~~~~~~~~~~~~~~~vilvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK 155 (179)
..+... +..+ |||+|+++|......+++.+|++|+|+|.++..+......|.. +.. .+ .|+++|+||
T Consensus 75 ~~~~~~-~~~i~liDTPG~~df~~~~~~~l~~aD~allVvDa~~g~~~~t~~~~~~-~~~---~~------iPiivviNK 143 (528)
T 3tr5_A 75 MQFPYK-DYLINLLDTPGHADFTEDTYRTLTAVDSALMVIDAAKGVEPRTIKLMEV-CRL---RH------TPIMTFINK 143 (528)
T ss_dssp EEEEET-TEEEEEECCCCSTTCCHHHHHGGGGCSEEEEEEETTTCSCHHHHHHHHH-HHT---TT------CCEEEEEEC
T ss_pred EEEEeC-CEEEEEEECCCchhHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHH-HHH---cC------CCEEEEEeC
Confidence 445556 6666 9999999999999999999999999999999888887776642 222 22 578899999
Q ss_pred CCcCC
Q psy15036 156 ELLQR 160 (179)
Q Consensus 156 ~Dl~~ 160 (179)
+|+..
T Consensus 144 ~Dl~~ 148 (528)
T 3tr5_A 144 MDRDT 148 (528)
T ss_dssp TTSCC
T ss_pred CCCcc
Confidence 99965
No 158
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=99.10 E-value=5.4e-12 Score=109.17 Aligned_cols=108 Identities=13% Similarity=0.027 Sum_probs=75.9
Q ss_pred eeEEE-EeCCCCc---eeEeee-ccCCCcccCcceeeeeEEEEEecCCCee--eeCCCchhchhhhhhhhcCCcEEEEEE
Q psy15036 43 NFGTQ-LGRRGIP---LLKHLK-YLGTGTHGKTVGIVFPAISVTYSIGPRY--FRFPLVSRFLSLTTGLYRGTMGFLLIF 115 (179)
Q Consensus 43 ~~Kiv-lG~~gvG---~~~~~~-~~~~~~~~~Ti~~~~~~k~v~~~~~~~i--wDt~G~e~~~~~~~~~~~~~~~vilvy 115 (179)
..||+ +|..++| ++..+. ..+...+.+++..++....+.++.+..+ |||+|++.|..++..+++.+|++|+|+
T Consensus 4 ~pkV~IvG~~~vGKTSLl~~L~~~~~~~~~~~giT~~i~~~~v~~~~g~~i~~iDTPGhe~f~~~~~~~~~~aD~vILVV 83 (537)
T 3izy_P 4 SPVVTIMGHVDHGKTTLLDKLRKTQVAAMEAGGITQHIGAFLVSLPSGEKITFLDTPGHAAFSAMRARGTQVTDIVILVV 83 (537)
T ss_dssp CCBCEEEESTTTTHHHHHHHHHHHHHHHSSSCCBCCCTTSCCBCSSCSSCCBCEECSSSCCTTTSBBSSSBSBSSCEEEC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCcccccCCceeEEEeEEEEEeCCCCEEEEEECCChHHHHHHHHHHHccCCEEEEEE
Confidence 46786 9999999 555555 2233334555555554445555315555 999999999999999999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCC
Q psy15036 116 DVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQR 160 (179)
Q Consensus 116 Dit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~ 160 (179)
|.++..+.+....| ......+ .|+++|+||+|+.+
T Consensus 84 Da~dg~~~qt~e~l----~~~~~~~------vPiIVViNKiDl~~ 118 (537)
T 3izy_P 84 AADDGVMKQTVESI----QHAKDAH------VPIVLAINKCDKAE 118 (537)
T ss_dssp BSSSCCCHHHHHHH----HHHHTTT------CCEEECCBSGGGTT
T ss_pred ECCCCccHHHHHHH----HHHHHcC------CcEEEEEecccccc
Confidence 99986555443333 3333333 57889999999964
No 159
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.08 E-value=3.8e-10 Score=95.19 Aligned_cols=88 Identities=8% Similarity=0.048 Sum_probs=60.5
Q ss_pred EEecCCCee--eeCCCchhchhhhhhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCC
Q psy15036 80 VTYSIGPRY--FRFPLVSRFLSLTTGLYRGTMGFLLIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLEL 157 (179)
Q Consensus 80 v~~~~~~~i--wDt~G~e~~~~~~~~~~~~~~~vilvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~D 157 (179)
+..+ +..+ |||+|+++|......+++.+|++|+|+|.++... .....|+..+... .. +++++|+||+|
T Consensus 99 ~~~~-~~~~~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~-~qt~~~l~~~~~~-~~-------~~iIvviNK~D 168 (434)
T 1zun_B 99 FSTA-KRKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYGVQ-TQTRRHSYIASLL-GI-------KHIVVAINKMD 168 (434)
T ss_dssp EECS-SEEEEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTTCSC-HHHHHHHHHHHHT-TC-------CEEEEEEECTT
T ss_pred eecC-CceEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCCc-HHHHHHHHHHHHc-CC-------CeEEEEEEcCc
Confidence 3334 4455 9999999998888889999999999999998643 3334455544433 21 47889999999
Q ss_pred cCCCCC----CCHHHHHHHHhhhC
Q psy15036 158 LQRCRE----VVTPDQIMFGSTQS 177 (179)
Q Consensus 158 l~~~r~----Vs~~e~~~~a~~~~ 177 (179)
+.+... ...++..+++++.+
T Consensus 169 l~~~~~~~~~~i~~~~~~~~~~~g 192 (434)
T 1zun_B 169 LNGFDERVFESIKADYLKFAEGIA 192 (434)
T ss_dssp TTTSCHHHHHHHHHHHHHHHHTTT
T ss_pred CCcccHHHHHHHHHHHHHHHHHhC
Confidence 965211 12355666666543
No 160
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.07 E-value=7.5e-11 Score=100.09 Aligned_cols=107 Identities=7% Similarity=-0.015 Sum_probs=63.9
Q ss_pred eeEEE-EeCCCCc---eeEeeeccCCCcccCcceeeeeEEEEE--ecCCCee--eeCCC--------chhchhhhhhhhc
Q psy15036 43 NFGTQ-LGRRGIP---LLKHLKYLGTGTHGKTVGIVFPAISVT--YSIGPRY--FRFPL--------VSRFLSLTTGLYR 106 (179)
Q Consensus 43 ~~Kiv-lG~~gvG---~~~~~~~~~~~~~~~Ti~~~~~~k~v~--~~~~~~i--wDt~G--------~e~~~~~~~~~~~ 106 (179)
..+|+ +|.+||| ++.++.+.......++.|.+....... .. +..+ |||+| ++++......+++
T Consensus 23 ~~~V~lvG~~nvGKSTL~n~l~~~~~~~v~~~~g~t~~~~~~~~~~~-~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~ 101 (456)
T 4dcu_A 23 KPVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWL-NYDFNLIDTGGIDIGDEPFLAQIRQQAEIAMD 101 (456)
T ss_dssp CCEEEEECSSSSSHHHHHHHHEEEEEC-----------CEEEECTTC-SSCCEEECCCC------CCHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcceeEEEEEEEEC-CceEEEEECCCCCCcchHHHHHHHHHHHhhHh
Confidence 46787 9999999 555555332222334445443323333 33 4444 99999 8889999999999
Q ss_pred CCcEEEEEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCC
Q psy15036 107 GTMGFLLIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQR 160 (179)
Q Consensus 107 ~~~~vilvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~ 160 (179)
++|++|+|+|..+. +.....|+.+..+. .+ .|++||+||+|+.+
T Consensus 102 ~ad~il~VvD~~~~--~~~~d~~l~~~l~~--~~------~pvilV~NK~D~~~ 145 (456)
T 4dcu_A 102 EADVIIFMVNGREG--VTAADEEVAKILYR--TK------KPVVLAVNKLDNTE 145 (456)
T ss_dssp HCSEEEEEEESSSC--SCHHHHHHHHHHTT--CC------SCEEEEEECC----
T ss_pred hCCEEEEEEeCCCC--CChHHHHHHHHHHH--cC------CCEEEEEECccchh
Confidence 99999999997753 33344455544433 22 57889999999864
No 161
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=99.05 E-value=4.6e-10 Score=98.30 Aligned_cols=75 Identities=11% Similarity=-0.075 Sum_probs=59.3
Q ss_pred eeCCCchhchhhhhhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCCCCCCCHHH
Q psy15036 89 FRFPLVSRFLSLTTGLYRGTMGFLLIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQRCREVVTPD 168 (179)
Q Consensus 89 wDt~G~e~~~~~~~~~~~~~~~vilvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~~r~Vs~~e 168 (179)
|||+|++.|......+++.+|++|+|+|.++..+++....|..... .+ .|+++|+||+|+.+.+ ..+.
T Consensus 76 iDTPGh~dF~~ev~~~l~~aD~aILVVDa~~gv~~qt~~~~~~~~~----~~------ipiIvViNKiDl~~a~--~~~v 143 (599)
T 3cb4_D 76 IDTPGHVDFSYEVSRSLAACEGALLVVDAGQGVEAQTLANCYTAME----MD------LEVVPVLNKIDLPAAD--PERV 143 (599)
T ss_dssp EECCCCGGGHHHHHHHHHHCSEEEEEEETTTCCCTHHHHHHHHHHH----TT------CEEEEEEECTTSTTCC--HHHH
T ss_pred EECCCchHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHH----CC------CCEEEeeeccCccccc--HHHH
Confidence 9999999999999999999999999999999888888888876543 12 5788999999997643 2333
Q ss_pred HHHHHhh
Q psy15036 169 QIMFGST 175 (179)
Q Consensus 169 ~~~~a~~ 175 (179)
..++++.
T Consensus 144 ~~ei~~~ 150 (599)
T 3cb4_D 144 AEEIEDI 150 (599)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 4445443
No 162
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=99.04 E-value=4.8e-10 Score=88.87 Aligned_cols=108 Identities=12% Similarity=0.064 Sum_probs=63.7
Q ss_pred eeeEEE-EeCCCCc---eeEeee--ccCCCcc-------cCcceeeeeEEEEEecCCC--ee--eeCCCch-------hc
Q psy15036 42 FNFGTQ-LGRRGIP---LLKHLK--YLGTGTH-------GKTVGIVFPAISVTYSIGP--RY--FRFPLVS-------RF 97 (179)
Q Consensus 42 ~~~Kiv-lG~~gvG---~~~~~~--~~~~~~~-------~~Ti~~~~~~k~v~~~~~~--~i--wDt~G~e-------~~ 97 (179)
+.+||+ +|..|+| ++..+. ..+...+ .+|++.++....+..+ +. .+ |||+|.. .+
T Consensus 7 ~~~~I~vvG~~g~GKSTLin~L~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~-~~~~~l~liDTpG~~d~~~~~~~~ 85 (274)
T 3t5d_A 7 FEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEG-GVQLLLTIVDTPGFGDAVDNSNCW 85 (274)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHSSSCC---------------CCCEEEEEEECC---CCEEEEEEECCCCSCCSCCTTTT
T ss_pred cEEEEEEECCCCCCHHHHHHHHhCCCccccCCCCcccccCCceEEEEEEEEEecC-CeEEEEEEEECCCccccccchhhH
Confidence 579997 9999999 554433 3344444 6788887776666555 65 33 9999983 34
Q ss_pred hhhh-------hhhhcC-------------CcEEEEEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCC
Q psy15036 98 LSLT-------TGLYRG-------------TMGFLLIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLEL 157 (179)
Q Consensus 98 ~~~~-------~~~~~~-------------~~~vilvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~D 157 (179)
..+. ..|++. +|+++++.+.++......-..+++.+.. . .|+++|+||+|
T Consensus 86 ~~i~~~i~~~~~~~l~~~~~~~r~~~~d~r~~~~l~~i~~~~~~~~~~d~~~l~~l~~----~------~pvi~V~nK~D 155 (274)
T 3t5d_A 86 QPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLHE----K------VNIIPLIAKAD 155 (274)
T ss_dssp HHHHHHHHHHHHHHHHHHHSSCCCSCCCCCCCEEEEEECSCCSSCCHHHHHHHHHHTT----T------SCEEEEESSGG
T ss_pred HHHHHHHHHHHHHHHHhhcccccccccCCceeEEEEEecCCCCCCCHHHHHHHHHHhc----c------CCEEEEEeccC
Confidence 4443 444443 7899999877663222222345544443 3 58889999999
Q ss_pred cCC
Q psy15036 158 LQR 160 (179)
Q Consensus 158 l~~ 160 (179)
+..
T Consensus 156 ~~~ 158 (274)
T 3t5d_A 156 TLT 158 (274)
T ss_dssp GSC
T ss_pred CCC
Confidence 854
No 163
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=99.04 E-value=6e-10 Score=92.16 Aligned_cols=108 Identities=8% Similarity=-0.009 Sum_probs=73.9
Q ss_pred eE-EE-EeCCCCc---eeEeeeccCC---CcccCcceeeeeEEEEEecCCCee--eeCCCc---------hhchhhhhhh
Q psy15036 44 FG-TQ-LGRRGIP---LLKHLKYLGT---GTHGKTVGIVFPAISVTYSIGPRY--FRFPLV---------SRFLSLTTGL 104 (179)
Q Consensus 44 ~K-iv-lG~~gvG---~~~~~~~~~~---~~~~~Ti~~~~~~k~v~~~~~~~i--wDt~G~---------e~~~~~~~~~ 104 (179)
++ |+ +|..|+| +++.+.+... ....+|. +.....+.++ +..+ |||+|. +.|..... .
T Consensus 179 ~~~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~--d~~~~~i~~~-g~~v~l~DT~G~i~~lp~~lve~f~~tl~-~ 254 (364)
T 2qtf_A 179 IPSIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTM--SPKRYAIPIN-NRKIMLVDTVGFIRGIPPQIVDAFFVTLS-E 254 (364)
T ss_dssp CCEEEEECBTTSSHHHHHHHHHCC-----------C--CSCEEEEEET-TEEEEEEECCCBCSSCCGGGHHHHHHHHH-G
T ss_pred CcEEEEECCCCCCHHHHHHHHHCCCccccCCccccc--CCEEEEEEEC-CEEEEEEeCCCchhcCCHHHHHHHHHHHH-H
Confidence 45 65 9999999 5555553211 1223344 3445677888 8776 999997 33444333 5
Q ss_pred hcCCcEEEEEEeCCChh--hHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCCC
Q psy15036 105 YRGTMGFLLIFDVTNEN--SFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQRC 161 (179)
Q Consensus 105 ~~~~~~vilvyDit~~~--Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~~ 161 (179)
++.+|++++|+|++++. +++.+..|.+.+......+ .|+++|+||+|+.+.
T Consensus 255 ~~~aD~il~VvD~s~~~~~~~~~~~~~~~~L~~l~~~~------~p~ilV~NK~Dl~~~ 307 (364)
T 2qtf_A 255 AKYSDALILVIDSTFSENLLIETLQSSFEILREIGVSG------KPILVTLNKIDKING 307 (364)
T ss_dssp GGGSSEEEEEEETTSCHHHHHHHHHHHHHHHHHHTCCS------CCEEEEEECGGGCCS
T ss_pred HHhCCEEEEEEECCCCcchHHHHHHHHHHHHHHhCcCC------CCEEEEEECCCCCCc
Confidence 78999999999999987 7788888887777665443 578999999999653
No 164
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=99.03 E-value=1.7e-10 Score=95.65 Aligned_cols=112 Identities=8% Similarity=0.027 Sum_probs=78.0
Q ss_pred EEE-EeCCCCc---eeEeeeccCCCcccCcceeeeeEEEEEecCCCee--eeCCCchhchhhhhhhhcCCcEEEEEEeCC
Q psy15036 45 GTQ-LGRRGIP---LLKHLKYLGTGTHGKTVGIVFPAISVTYSIGPRY--FRFPLVSRFLSLTTGLYRGTMGFLLIFDVT 118 (179)
Q Consensus 45 Kiv-lG~~gvG---~~~~~~~~~~~~~~~Ti~~~~~~k~v~~~~~~~i--wDt~G~e~~~~~~~~~~~~~~~vilvyDit 118 (179)
+|+ +|..++| ++..+. +...|++..+ ..+..+ +..+ |||+|+++|.......++.+|++|+|+|
T Consensus 23 ~i~iiG~~d~GKSTL~~~L~-----~~giTi~~~~--~~~~~~-~~~i~iiDtPGh~~f~~~~~~~~~~aD~ailVvd-- 92 (370)
T 2elf_A 23 NVAIIGTEKSGRTSLAANLG-----KKGTSSDITM--YNNDKE-GRNMVFVDAHSYPKTLKSLITALNISDIAVLCIP-- 92 (370)
T ss_dssp EEEEEESTTSSHHHHHHTTS-----EEEEESSSEE--EEECSS-SSEEEEEECTTTTTCHHHHHHHHHTCSEEEEEEC--
T ss_pred EEEEECCCCCCHHHHHHHHH-----hCCEEEEeeE--EEEecC-CeEEEEEECCChHHHHHHHHHHHHHCCEEEEEEc--
Confidence 776 9999999 554444 3455665444 345556 6666 9999999998777778899999999999
Q ss_pred ChhhHHHHHHHHHHHHHHhCCccCccccceEEEEee-CCCcCCCCCCCH--HHHHHHHhh
Q psy15036 119 NENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGC-LELLQRCREVVT--PDQIMFGST 175 (179)
Q Consensus 119 ~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGn-K~Dl~~~r~Vs~--~e~~~~a~~ 175 (179)
+...+.....|+..+.... - |.++++.| |+|+ +.+.+.. ++.++++++
T Consensus 93 ~~g~~~qt~e~~~~~~~~~-i-------~~~ivvvNNK~Dl-~~~~~~~~~~~i~~~l~~ 143 (370)
T 2elf_A 93 PQGLDAHTGECIIALDLLG-F-------KHGIIALTRSDST-HMHAIDELKAKLKVITSG 143 (370)
T ss_dssp TTCCCHHHHHHHHHHHHTT-C-------CEEEEEECCGGGS-CHHHHHHHHHHHHHHTTT
T ss_pred CCCCcHHHHHHHHHHHHcC-C-------CeEEEEEEeccCC-CHHHHHHHHHHHHHHHHh
Confidence 5566777777777766542 1 34366667 9999 5433333 566666554
No 165
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=99.02 E-value=4.8e-10 Score=93.73 Aligned_cols=125 Identities=10% Similarity=0.083 Sum_probs=78.6
Q ss_pred eeeEEE-EeCCCCc---eeEeeecc---------CCCc-------ccCcceeeee--EEEEEecCCCee--eeCCCchhc
Q psy15036 42 FNFGTQ-LGRRGIP---LLKHLKYL---------GTGT-------HGKTVGIVFP--AISVTYSIGPRY--FRFPLVSRF 97 (179)
Q Consensus 42 ~~~Kiv-lG~~gvG---~~~~~~~~---------~~~~-------~~~Ti~~~~~--~k~v~~~~~~~i--wDt~G~e~~ 97 (179)
..+||+ +|..++| ++..+... +... ...+.|+++. ...+... +..+ |||+|+++|
T Consensus 10 ~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~-~~~~~iiDtpG~~~f 88 (405)
T 2c78_A 10 PHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETA-KRHYSHVDCPGHADY 88 (405)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEECS-SCEEEEEECCCSGGG
T ss_pred CeEEEEEEcCCCCCHHHHHHHHHhhhhhcCccccccchhhccCCHHHHHcCCCEEeeeeEeccC-CeEEEEEECCChHHH
Confidence 368897 9999999 54444421 1000 0012222222 2233334 5555 999999999
Q ss_pred hhhhhhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCCCCC---CCHHHHHHHHh
Q psy15036 98 LSLTTGLYRGTMGFLLIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQRCRE---VVTPDQIMFGS 174 (179)
Q Consensus 98 ~~~~~~~~~~~~~vilvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~~r~---Vs~~e~~~~a~ 174 (179)
......+++.+|++|+|+|.++... .....|+..+... .- |.+++|+||+|+.+... ...++.+++++
T Consensus 89 ~~~~~~~~~~aD~~ilVvda~~g~~-~qt~~~l~~~~~~--~i------p~iivviNK~Dl~~~~~~~~~~~~~~~~~l~ 159 (405)
T 2c78_A 89 IKNMITGAAQMDGAILVVSAADGPM-PQTREHILLARQV--GV------PYIVVFMNKVDMVDDPELLDLVEMEVRDLLN 159 (405)
T ss_dssp HHHHHHHHTTCSSEEEEEETTTCCC-HHHHHHHHHHHHT--TC------CCEEEEEECGGGCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCEEEEEEECCCCCc-HHHHHHHHHHHHc--CC------CEEEEEEECccccCcHHHHHHHHHHHHHHHH
Confidence 9888889999999999999988654 3445666665543 11 33788999999974221 12345666665
Q ss_pred hh
Q psy15036 175 TQ 176 (179)
Q Consensus 175 ~~ 176 (179)
+.
T Consensus 160 ~~ 161 (405)
T 2c78_A 160 QY 161 (405)
T ss_dssp HT
T ss_pred Hh
Confidence 54
No 166
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=99.02 E-value=9.9e-10 Score=91.78 Aligned_cols=64 Identities=5% Similarity=-0.021 Sum_probs=56.2
Q ss_pred eeCCCchhchhhhhhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCC
Q psy15036 89 FRFPLVSRFLSLTTGLYRGTMGFLLIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQR 160 (179)
Q Consensus 89 wDt~G~e~~~~~~~~~~~~~~~vilvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~ 160 (179)
|||+|+++|......+++.+|++|+|+|.++..++.....|+..+..... .|+++|+||+|+.+
T Consensus 80 iDtPGh~~~~~~~~~~~~~~D~~ilVvda~~~~~~~qt~~~~~~~~~~~~--------~~iivviNK~Dl~~ 143 (403)
T 3sjy_A 80 IDAPGHEVLMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGIIGV--------KNLIIVQNKVDVVS 143 (403)
T ss_dssp EECCCCGGGHHHHHHHHTTCSEEEEEEETTSCSSCHHHHHHHHHHHHHTC--------CCEEEEEECGGGSC
T ss_pred EECCCcHHHHHHHHHHHhhCCEEEEEEECCCCCCcHHHHHHHHHHHHcCC--------CCEEEEEECccccc
Confidence 99999999999999999999999999999998888888888887766543 36888999999965
No 167
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=99.02 E-value=7.1e-10 Score=92.54 Aligned_cols=123 Identities=11% Similarity=0.047 Sum_probs=76.7
Q ss_pred eeEEE-EeCCCCc---eeEeeecc--------CCC-----------cccCcceeeeeEEEEEecCCCee--eeCCCchhc
Q psy15036 43 NFGTQ-LGRRGIP---LLKHLKYL--------GTG-----------THGKTVGIVFPAISVTYSIGPRY--FRFPLVSRF 97 (179)
Q Consensus 43 ~~Kiv-lG~~gvG---~~~~~~~~--------~~~-----------~~~~Ti~~~~~~k~v~~~~~~~i--wDt~G~e~~ 97 (179)
.+||+ +|..++| ++..+... +.. ....|++.. ...+... +..+ |||+|+++|
T Consensus 3 ~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~giTi~~~--~~~~~~~-~~~~~iiDtpG~~~f 79 (397)
T 1d2e_A 3 HVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAA--HVEYSTA-ARHYAHTDCPGHADY 79 (397)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECE--EEEEECS-SCEEEEEECSSHHHH
T ss_pred eEEEEEEeCCCCCHHHHHHHHhChhhhcCccccchhhhhhcCHHHHhcCcEEEee--eEEeccC-CeEEEEEECCChHHH
Confidence 57897 9999999 44444421 100 112233322 1233334 5555 999999999
Q ss_pred hhhhhhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCCCCC---CCHHHHHHHHh
Q psy15036 98 LSLTTGLYRGTMGFLLIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQRCRE---VVTPDQIMFGS 174 (179)
Q Consensus 98 ~~~~~~~~~~~~~vilvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~~r~---Vs~~e~~~~a~ 174 (179)
......+++.+|++|+|+|.++....+....| ..++.. . .|.+++++||+|+.+... ...++++++++
T Consensus 80 ~~~~~~~~~~aD~~ilVvda~~g~~~qt~e~l-~~~~~~---~-----vp~iivviNK~Dl~~~~~~~~~~~~~~~~~l~ 150 (397)
T 1d2e_A 80 VKNMITGTAPLDGCILVVAANDGPMPQTREHL-LLARQI---G-----VEHVVVYVNKADAVQDSEMVELVELEIRELLT 150 (397)
T ss_dssp HHHHHHTSSCCSEEEEEEETTTCSCHHHHHHH-HHHHHT---T-----CCCEEEEEECGGGCSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhHhhCCEEEEEEECCCCCCHHHHHHH-HHHHHc---C-----CCeEEEEEECcccCCCHHHHHHHHHHHHHHHH
Confidence 88888899999999999999985444333333 333332 2 133778899999974221 22356677776
Q ss_pred hhC
Q psy15036 175 TQS 177 (179)
Q Consensus 175 ~~~ 177 (179)
+.+
T Consensus 151 ~~~ 153 (397)
T 1d2e_A 151 EFG 153 (397)
T ss_dssp HTT
T ss_pred HcC
Confidence 543
No 168
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=99.00 E-value=6.2e-11 Score=100.76 Aligned_cols=97 Identities=9% Similarity=-0.011 Sum_probs=62.0
Q ss_pred CcceeeeeEEEEEecCCCee--eeCCCchhchhhhhhhhcCCcEEEEEEeCCCh---hhHH---HHHHHHHHHHHHhCCc
Q psy15036 69 KTVGIVFPAISVTYSIGPRY--FRFPLVSRFLSLTTGLYRGTMGFLLIFDVTNE---NSFK---DVEKWLLQIKVMDGAL 140 (179)
Q Consensus 69 ~Ti~~~~~~k~v~~~~~~~i--wDt~G~e~~~~~~~~~~~~~~~vilvyDit~~---~Sf~---~l~~w~~~i~~~~~~~ 140 (179)
.|+...+ ..+..+ +..+ |||+|+++|......+++.+|++|+|+|.++. .||+ ....++..+... .-
T Consensus 71 iTi~~~~--~~~~~~-~~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvda~~g~~~~sf~~~~qt~~~~~~~~~~-~v- 145 (458)
T 1f60_A 71 ITIDIAL--WKFETP-KYQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLAFTL-GV- 145 (458)
T ss_dssp CCCSCSC--EEEECS-SEEEEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHHHHT-TC-
T ss_pred cEEEEEE--EEEecC-CceEEEEECCCcHHHHHHHHhhhhhCCEEEEEEeCCcCccccccCcchhHHHHHHHHHHc-CC-
Confidence 3444333 344555 5555 99999999998888899999999999999875 3443 222222222221 11
Q ss_pred cCccccceEEEEeeCCCcCCCC----CCCHHHHHHHHhhh
Q psy15036 141 FTHFELQIVFMRGCLELLQRCR----EVVTPDQIMFGSTQ 176 (179)
Q Consensus 141 ~~~~~~~~iilvGnK~Dl~~~r----~Vs~~e~~~~a~~~ 176 (179)
+++|+|+||+|+.+.. ....++..+++++.
T Consensus 146 ------~~iivviNK~Dl~~~~~~~~~~i~~~~~~~l~~~ 179 (458)
T 1f60_A 146 ------RQLIVAVNKMDSVKWDESRFQEIVKETSNFIKKV 179 (458)
T ss_dssp ------CEEEEEEECGGGGTTCHHHHHHHHHHHHHHHHHH
T ss_pred ------CeEEEEEEccccccCCHHHHHHHHHHHHHHHHHc
Confidence 4688999999996311 12334566666554
No 169
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=98.98 E-value=1.7e-10 Score=100.95 Aligned_cols=104 Identities=13% Similarity=0.039 Sum_probs=71.0
Q ss_pred eeEEE-EeCCCCc---eeEeeeccCCC-----cccCcceeeeeEEE--------------EEecCCCee--eeCCCchhc
Q psy15036 43 NFGTQ-LGRRGIP---LLKHLKYLGTG-----THGKTVGIVFPAIS--------------VTYSIGPRY--FRFPLVSRF 97 (179)
Q Consensus 43 ~~Kiv-lG~~gvG---~~~~~~~~~~~-----~~~~Ti~~~~~~k~--------------v~~~~~~~i--wDt~G~e~~ 97 (179)
..+|+ +|..++| ++.++...... ...+++|..+.... +.+. ...+ |||+|++.|
T Consensus 5 ~~~V~IvGh~d~GKTTLl~~L~~~~v~~~e~ggiT~~ig~~~~~~~~~~~~~~~~~~~~~v~~~-~~~i~liDTPGhe~F 83 (594)
T 1g7s_A 5 SPIVSVLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGATEIPMDVIEGICGDFLKKFSIRET-LPGLFFIDTPGHEAF 83 (594)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHHSCC----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGT-CCEEEEECCCTTSCC
T ss_pred CcEEEEECCCCCcHHHHHHHHhcccCccccCCceecccCeEEEeechhhhhccccccccccccc-cCCEEEEECCCcHHH
Confidence 46786 9999999 55555422111 23345654432110 0011 1124 999999999
Q ss_pred hhhhhhhhcCCcEEEEEEeCCC---hhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCC
Q psy15036 98 LSLTTGLYRGTMGFLLIFDVTN---ENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQR 160 (179)
Q Consensus 98 ~~~~~~~~~~~~~vilvyDit~---~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~ 160 (179)
..++..+++.+|++|+|||.++ ++|++.+..+ +. .+ .|+++++||+|+..
T Consensus 84 ~~~~~r~~~~aD~aILVvDa~~Gv~~qT~e~l~~l----~~---~~------vPiIVViNKiDl~~ 136 (594)
T 1g7s_A 84 TTLRKRGGALADLAILIVDINEGFKPQTQEALNIL----RM---YR------TPFVVAANKIDRIH 136 (594)
T ss_dssp TTSBCSSSBSCSEEEEEEETTTCCCHHHHHHHHHH----HH---TT------CCEEEEEECGGGST
T ss_pred HHHHHHHHhhCCEEEEEEECCCCccHhHHHHHHHH----HH---cC------CeEEEEeccccccc
Confidence 9999999999999999999999 8888876643 21 22 57889999999965
No 170
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=98.98 E-value=1.3e-09 Score=82.19 Aligned_cols=121 Identities=12% Similarity=0.052 Sum_probs=70.5
Q ss_pred eeeEEE-EeCCCCc---eeEeeecc-CCCcccCcceeeeeEEEEEecCCCee-eeCCCch----------hchhhhhhhh
Q psy15036 42 FNFGTQ-LGRRGIP---LLKHLKYL-GTGTHGKTVGIVFPAISVTYSIGPRY-FRFPLVS----------RFLSLTTGLY 105 (179)
Q Consensus 42 ~~~Kiv-lG~~gvG---~~~~~~~~-~~~~~~~Ti~~~~~~k~v~~~~~~~i-wDt~G~e----------~~~~~~~~~~ 105 (179)
...+|+ +|..|+| +++.+.+. +...+.|+.|.......+.++ +... ||++|+. .+......++
T Consensus 25 ~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~~~-~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~ 103 (210)
T 1pui_A 25 TGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVA-DGKRLVDLPGYGYAEVPEEMKRKWQRALGEYL 103 (210)
T ss_dssp CSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEE-TTEEEEECCCCC------CCHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEEec-CCEEEEECcCCcccccCHHHHHHHHHHHHHHH
Confidence 457886 9999999 66666543 234456777765544556666 5433 9999984 3344444455
Q ss_pred ---cCCcEEEEEEeCCChhhHHH--HHHHHHHHHHHhCCccCccccceEEEEeeCCCcCCC--CCCCHHHHHHHHhh
Q psy15036 106 ---RGTMGFLLIFDVTNENSFKD--VEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQRC--REVVTPDQIMFGST 175 (179)
Q Consensus 106 ---~~~~~vilvyDit~~~Sf~~--l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~~--r~Vs~~e~~~~a~~ 175 (179)
+.++++++++|+++..++.. +..|+.. .. .|+++|+||+|+... ++...+++++++.+
T Consensus 104 ~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~------~~------~~~~~v~nK~D~~s~~~~~~~~~~~~~~~~~ 168 (210)
T 1pui_A 104 EKRQSLQGLVVLMDIRHPLKDLDQQMIEWAVD------SN------IAVLVLLTKADKLASGARKAQLNMVREAVLA 168 (210)
T ss_dssp HHCTTEEEEEEEEETTSCCCHHHHHHHHHHHH------TT------CCEEEEEECGGGSCHHHHHHHHHHHHHHHGG
T ss_pred HhhhcccEEEEEEECCCCCchhHHHHHHHHHH------cC------CCeEEEEecccCCCchhHHHHHHHHHHHHHh
Confidence 57899999999998766643 3344321 12 467788999998542 33334566666654
No 171
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=98.97 E-value=7.6e-10 Score=94.64 Aligned_cols=118 Identities=10% Similarity=-0.033 Sum_probs=75.0
Q ss_pred eeeEEE-EeCCCCc---eeEeeeccC--------CCccc--CcceeeeeEEEEEecCCCee--eeCCCchhchhhhhhhh
Q psy15036 42 FNFGTQ-LGRRGIP---LLKHLKYLG--------TGTHG--KTVGIVFPAISVTYSIGPRY--FRFPLVSRFLSLTTGLY 105 (179)
Q Consensus 42 ~~~Kiv-lG~~gvG---~~~~~~~~~--------~~~~~--~Ti~~~~~~k~v~~~~~~~i--wDt~G~e~~~~~~~~~~ 105 (179)
..++|+ +|..++| ++..+.... ..+.. .|+...+ ..+.++ +..+ |||+|+++|......++
T Consensus 18 ~~~~I~iiG~~d~GKSTLi~~L~~~~~~~~~d~~~~e~~~GiTi~~~~--~~~~~~-~~~i~iiDtPGh~~~~~~~~~~~ 94 (482)
T 1wb1_A 18 KNINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGF--SAFKLE-NYRITLVDAPGHADLIRAVVSAA 94 (482)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHTTC--------------------CC--CEEEET-TEEEEECCCSSHHHHHHHHHHHT
T ss_pred CCCEEEEECCCCChHHHHHHHHHCCCcccccccccccccCccEEecce--EEEEEC-CEEEEEEECCChHHHHHHHHHHH
Confidence 368897 9999999 555554321 12222 3444333 345556 6666 99999999988888899
Q ss_pred cCCcEEEEEEeCCC---hhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCCC--CCCCHHHHHHHHhh
Q psy15036 106 RGTMGFLLIFDVTN---ENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQRC--REVVTPDQIMFGST 175 (179)
Q Consensus 106 ~~~~~vilvyDit~---~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~~--r~Vs~~e~~~~a~~ 175 (179)
+.+|++|+|+|.++ +++++.+. .+... . .|+++|+||+|+.++ ++...++..+++++
T Consensus 95 ~~aD~~ilVvda~~g~~~qt~e~l~----~~~~~---~------ip~IvviNK~Dl~~~~~~~~~~~~l~~~l~~ 156 (482)
T 1wb1_A 95 DIIDLALIVVDAKEGPKTQTGEHML----ILDHF---N------IPIIVVITKSDNAGTEEIKRTEMIMKSILQS 156 (482)
T ss_dssp TSCCEEEEEEETTTCSCHHHHHHHH----HHHHT---T------CCBCEEEECTTSSCHHHHHHHHHHHHHHHHH
T ss_pred hhCCEEEEEEecCCCccHHHHHHHH----HHHHc---C------CCEEEEEECCCcccchhHHHHHHHHHHHHhh
Confidence 99999999999998 66766654 22221 2 345888999999652 12234455555543
No 172
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=98.96 E-value=2.5e-09 Score=89.46 Aligned_cols=123 Identities=12% Similarity=0.060 Sum_probs=78.3
Q ss_pred ceeeEEE-EeCCCCc---eeEeeec----cCCCcccC--cceeeeeEEEEEec------------C--C------Cee--
Q psy15036 41 SFNFGTQ-LGRRGIP---LLKHLKY----LGTGTHGK--TVGIVFPAISVTYS------------I--G------PRY-- 88 (179)
Q Consensus 41 ~~~~Kiv-lG~~gvG---~~~~~~~----~~~~~~~~--Ti~~~~~~k~v~~~------------~--~------~~i-- 88 (179)
...++|+ +|..++| ++..+.+ .+.++..+ |+...+....+... + + ..+
T Consensus 8 ~~~~~I~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~i 87 (410)
T 1kk1_A 8 QAEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRVSF 87 (410)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHhCCccccChhhhcCCcEEEEeeeeeecccccccccccccccccccCcccccccEEEE
Confidence 3468897 9999999 5555542 23344444 77655543333210 0 1 233
Q ss_pred eeCCCchhchhhhhhhhcCCcEEEEEEeCC----ChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCCCCC-
Q psy15036 89 FRFPLVSRFLSLTTGLYRGTMGFLLIFDVT----NENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQRCRE- 163 (179)
Q Consensus 89 wDt~G~e~~~~~~~~~~~~~~~vilvyDit----~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~~r~- 163 (179)
|||+|+++|..........+|++|+|+|.+ .+++++.+..|. .. .. +|+++|+||+|+.+...
T Consensus 88 iDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~----~~-~~-------~~iivviNK~Dl~~~~~~ 155 (410)
T 1kk1_A 88 IDAPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMALQ----II-GQ-------KNIIIAQNKIELVDKEKA 155 (410)
T ss_dssp EECSSHHHHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHHHHH----HH-TC-------CCEEEEEECGGGSCHHHH
T ss_pred EECCChHHHHHHHHhhhhhCCEEEEEEECCCCCCChhHHHHHHHHH----Hc-CC-------CcEEEEEECccCCCHHHH
Confidence 999999999776666777889999999998 456777665442 22 22 47888899999975332
Q ss_pred -CCHHHHHHHHhh
Q psy15036 164 -VVTPDQIMFGST 175 (179)
Q Consensus 164 -Vs~~e~~~~a~~ 175 (179)
...++.++++++
T Consensus 156 ~~~~~~i~~~l~~ 168 (410)
T 1kk1_A 156 LENYRQIKEFIEG 168 (410)
T ss_dssp HHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHh
Confidence 234556666543
No 173
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=98.95 E-value=3.1e-09 Score=94.51 Aligned_cols=110 Identities=10% Similarity=-0.006 Sum_probs=75.1
Q ss_pred ccCceeeEEE-EeCCCCc---eeEeeec---cC------CC------------cccCcceeeeeEEEEEecCCCee--ee
Q psy15036 38 KEFSFNFGTQ-LGRRGIP---LLKHLKY---LG------TG------------THGKTVGIVFPAISVTYSIGPRY--FR 90 (179)
Q Consensus 38 ~~~~~~~Kiv-lG~~gvG---~~~~~~~---~~------~~------------~~~~Ti~~~~~~k~v~~~~~~~i--wD 90 (179)
...+...+|+ +|..++| ++..+.. .. .. ....|+.... ..+... +..+ ||
T Consensus 7 ~~~~~~~~I~IvG~~~aGKTTL~~~Ll~~~g~~~~~g~v~~~~~~~d~~~~E~~~giTi~~~~--~~~~~~-~~~i~liD 83 (691)
T 1dar_A 7 YDLKRLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAV--TTCFWK-DHRINIID 83 (691)
T ss_dssp CCGGGEEEEEEEECTTSCHHHHHHHHHHHHCC----------------------------CCE--EEEEET-TEEEEEEC
T ss_pred CccccccEEEEECCCCCCHHHHHHHHHHhcCCCcccceecCCceeccCchhhhhcccccccce--EEEEEC-CeEEEEEE
Confidence 3445678897 9999999 3333321 00 00 2344554332 344555 6566 99
Q ss_pred CCCchhchhhhhhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCC
Q psy15036 91 FPLVSRFLSLTTGLYRGTMGFLLIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQR 160 (179)
Q Consensus 91 t~G~e~~~~~~~~~~~~~~~vilvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~ 160 (179)
|+|+..|......+++.+|++|+|+|.++..++.....|.. +.+. + .|+++|+||+|+..
T Consensus 84 TPG~~df~~~~~~~l~~aD~~ilVvDa~~g~~~~t~~~~~~-~~~~---~------~p~ivviNKiD~~~ 143 (691)
T 1dar_A 84 TPGHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQ-AEKY---K------VPRIAFANKMDKTG 143 (691)
T ss_dssp CCSSTTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHH-HHHT---T------CCEEEEEECTTSTT
T ss_pred CcCccchHHHHHHHHHHCCEEEEEEECCCCcchhhHHHHHH-HHHc---C------CCEEEEEECCCccc
Confidence 99999999999999999999999999999988888877764 3322 2 57788899999975
No 174
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=98.95 E-value=2.5e-10 Score=98.06 Aligned_cols=104 Identities=13% Similarity=0.028 Sum_probs=69.4
Q ss_pred eeEEE-EeCCCCc---eeEeeec-cCCCcccCcceeeeeEEEEEecCCCee--eeCCCchhchhhhhhhhcCCcEEEEEE
Q psy15036 43 NFGTQ-LGRRGIP---LLKHLKY-LGTGTHGKTVGIVFPAISVTYSIGPRY--FRFPLVSRFLSLTTGLYRGTMGFLLIF 115 (179)
Q Consensus 43 ~~Kiv-lG~~gvG---~~~~~~~-~~~~~~~~Ti~~~~~~k~v~~~~~~~i--wDt~G~e~~~~~~~~~~~~~~~vilvy 115 (179)
..+|+ +|..++| ++..+.. .+.....+++..+.....+..+ +..+ |||+|++.|..++..+++.+|++|+|+
T Consensus 4 ~~~V~IvGhvd~GKTTLl~~L~~~~v~~~e~~GIT~~i~~~~v~~~-~~~i~~iDTPGhe~f~~~~~~~~~~aD~aILVV 82 (501)
T 1zo1_I 4 APVVTIMGHVDHGKTSLLEYIRSTKVASGEAGGITQHIGAYHVETE-NGMITFLDTPGHAAFTSMRARGAQATDIVVLVV 82 (501)
T ss_dssp CCCEEEEESTTSSSHHHHHHHHHHHHSBTTBCCCCCCSSCCCCCTT-SSCCCEECCCTTTCCTTSBCSSSBSCSSEEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCccccCCCeeEeEEEEEEEEC-CEEEEEEECCCcHHHHHHHHHHHhhCCEEEEEe
Confidence 45676 9999999 5555442 2222222222222222234455 6666 999999999999999999999999999
Q ss_pred eCCC---hhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCC
Q psy15036 116 DVTN---ENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQR 160 (179)
Q Consensus 116 Dit~---~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~ 160 (179)
|.++ +++++.+. .+.. .+ .|+++++||+|+.+
T Consensus 83 da~~g~~~qT~e~l~----~~~~---~~------vPiIVviNKiDl~~ 117 (501)
T 1zo1_I 83 AADDGVMPQTIEAIQ----HAKA---AQ------VPVVVAVNKIDKPE 117 (501)
T ss_dssp ETTTBSCTTTHHHHH----HHHH---TT------CCEEEEEECSSSST
T ss_pred ecccCccHHHHHHHH----HHHh---cC------ceEEEEEEeccccc
Confidence 9988 55555432 2221 22 57889999999964
No 175
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=98.94 E-value=1.8e-09 Score=94.46 Aligned_cols=63 Identities=13% Similarity=0.052 Sum_probs=54.5
Q ss_pred eeCCCchhchhhhhhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCCC
Q psy15036 89 FRFPLVSRFLSLTTGLYRGTMGFLLIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQRC 161 (179)
Q Consensus 89 wDt~G~e~~~~~~~~~~~~~~~vilvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~~ 161 (179)
|||+|++.|......+++.+|++|+|+|.++..+++....|..... .+ .|+++|+||+|+.+.
T Consensus 78 iDTPGh~dF~~ev~r~l~~aD~aILVVDa~~gv~~qt~~~~~~a~~----~~------ipiIvviNKiDl~~a 140 (600)
T 2ywe_A 78 IDTPGHVDFSYEVSRALAACEGALLLIDASQGIEAQTVANFWKAVE----QD------LVIIPVINKIDLPSA 140 (600)
T ss_dssp ECCCCSGGGHHHHHHHHHTCSEEEEEEETTTBCCHHHHHHHHHHHH----TT------CEEEEEEECTTSTTC
T ss_pred EECCCcHhHHHHHHHHHHhCCEEEEEEECCCCccHHHHHHHHHHHH----CC------CCEEEEEeccCcccc
Confidence 9999999999888889999999999999999988888888876543 22 578899999999763
No 176
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=98.94 E-value=1.2e-09 Score=88.00 Aligned_cols=76 Identities=8% Similarity=-0.155 Sum_probs=61.0
Q ss_pred CCchhchhhhhhhhcCCcEEEEEEeCCChh-hHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCCCCCCC-HHHH
Q psy15036 92 PLVSRFLSLTTGLYRGTMGFLLIFDVTNEN-SFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQRCREVV-TPDQ 169 (179)
Q Consensus 92 ~G~e~~~~~~~~~~~~~~~vilvyDit~~~-Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~~r~Vs-~~e~ 169 (179)
..++++..+.+.+++++|++++|||+++++ ||+.+..|+..+.. .+ .|++||+||+||.++++++ .++.
T Consensus 64 ~i~er~~~l~r~~~~naD~vliV~d~~~p~~s~~~l~~~l~~~~~---~~------~~~ilV~NK~DL~~~~~v~~~~~~ 134 (302)
T 2yv5_A 64 EVEERKNLLIRPKVANVDRVIIVETLKMPEFNNYLLDNMLVVYEY---FK------VEPVIVFNKIDLLNEEEKKELERW 134 (302)
T ss_dssp EECCCSCEEETTEEESCCEEEEEECSTTTTCCHHHHHHHHHHHHH---TT------CEEEEEECCGGGCCHHHHHHHHHH
T ss_pred eeCChHHHHhHHHHHhcCEEEEEEECCCCCCCHHHHHHHHHHHHh---CC------CCEEEEEEcccCCCccccHHHHHH
Confidence 448899999999999999999999999997 99999999997765 22 5778999999997655444 4566
Q ss_pred HHHHhhh
Q psy15036 170 IMFGSTQ 176 (179)
Q Consensus 170 ~~~a~~~ 176 (179)
.+++++.
T Consensus 135 ~~~~~~~ 141 (302)
T 2yv5_A 135 ISIYRDA 141 (302)
T ss_dssp HHHHHHT
T ss_pred HHHHHHC
Confidence 6666543
No 177
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Probab=98.92 E-value=1.9e-09 Score=97.75 Aligned_cols=71 Identities=15% Similarity=-0.047 Sum_probs=58.5
Q ss_pred eeCCCchhchhhhhhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcC-CCCCCCHH
Q psy15036 89 FRFPLVSRFLSLTTGLYRGTMGFLLIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQ-RCREVVTP 167 (179)
Q Consensus 89 wDt~G~e~~~~~~~~~~~~~~~vilvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~-~~r~Vs~~ 167 (179)
|||+|+++|......+++.+|++|+|||.++..+++....|..... .+ .|+++|+||+|+. .++.++.+
T Consensus 103 iDTPG~~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~~----~~------~p~ilviNK~D~~~~e~~~~~~ 172 (842)
T 1n0u_A 103 IDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTETVLRQALG----ER------IKPVVVINKVDRALLELQVSKE 172 (842)
T ss_dssp ECCCCCCSSCHHHHHHHHTCSEEEEEEETTTBSCHHHHHHHHHHHH----TT------CEEEEEEECHHHHHHTSCCCHH
T ss_pred EECcCchhhHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHH----cC------CCeEEEEECCCcchhhhccCHH
Confidence 9999999999999999999999999999999999988877754332 12 5778899999986 35567766
Q ss_pred HH
Q psy15036 168 DQ 169 (179)
Q Consensus 168 e~ 169 (179)
++
T Consensus 173 e~ 174 (842)
T 1n0u_A 173 DL 174 (842)
T ss_dssp HH
T ss_pred HH
Confidence 64
No 178
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=98.87 E-value=2.2e-09 Score=86.46 Aligned_cols=119 Identities=11% Similarity=-0.042 Sum_probs=70.6
Q ss_pred eeEEE-EeCCCCc---eeEeeeccCC----CcccCcceeeeeEEEEEecCCCee--eeCCCch-h--------chhhhhh
Q psy15036 43 NFGTQ-LGRRGIP---LLKHLKYLGT----GTHGKTVGIVFPAISVTYSIGPRY--FRFPLVS-R--------FLSLTTG 103 (179)
Q Consensus 43 ~~Kiv-lG~~gvG---~~~~~~~~~~----~~~~~Ti~~~~~~k~v~~~~~~~i--wDt~G~e-~--------~~~~~~~ 103 (179)
..+|. +|.+|+| ++..+.+... .....|.. .....+..+ +..+ |||+|++ + +......
T Consensus 8 ~~~VaIvG~~nvGKSTLln~L~g~~~~i~s~~~~tTr~--~~~gi~~~~-~~~i~~iDTpG~~~~~~~~l~~~~~~~~~~ 84 (301)
T 1ega_A 8 CGFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRH--RIVGIHTEG-AYQAIYVDTPGLHMEEKRAINRLMNKAASS 84 (301)
T ss_dssp EEEEEEECSSSSSHHHHHHHHHTCSEEECCCCSSCCSS--CEEEEEEET-TEEEEEESSSSCCHHHHHHHHHHHTCCTTS
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCccccCCCCCccee--eEEEEEEEC-CeeEEEEECcCCCccchhhHHHHHHHHHHH
Confidence 34575 9999999 5555443211 11112221 111223334 5555 9999997 2 3344566
Q ss_pred hhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCCCCCCCHHHHHHHHhh
Q psy15036 104 LYRGTMGFLLIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQRCREVVTPDQIMFGST 175 (179)
Q Consensus 104 ~~~~~~~vilvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~~r~Vs~~e~~~~a~~ 175 (179)
+++.+|++++|+|.++ +.....|+-+... ... .|+++|+||+|+...+....+...++++.
T Consensus 85 ~l~~~D~vl~Vvd~~~---~~~~~~~i~~~l~--~~~------~P~ilvlNK~D~~~~~~~~~~~l~~l~~~ 145 (301)
T 1ega_A 85 SIGDVELVIFVVEGTR---WTPDDEMVLNKLR--EGK------APVILAVNKVDNVQEKADLLPHLQFLASQ 145 (301)
T ss_dssp CCCCEEEEEEEEETTC---CCHHHHHHHHHHH--SSS------SCEEEEEESTTTCCCHHHHHHHHHHHHTT
T ss_pred HHhcCCEEEEEEeCCC---CCHHHHHHHHHHH--hcC------CCEEEEEECcccCccHHHHHHHHHHHHHh
Confidence 7889999999999976 4444455544332 222 57888899999976333334555556554
No 179
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=98.87 E-value=1.7e-09 Score=100.16 Aligned_cols=125 Identities=11% Similarity=0.031 Sum_probs=75.9
Q ss_pred eeeEEE-EeCCCCc---eeEeeecc----C----C-------CcccCcceeeeeEE--EEEecCCCee--eeCCCchhch
Q psy15036 42 FNFGTQ-LGRRGIP---LLKHLKYL----G----T-------GTHGKTVGIVFPAI--SVTYSIGPRY--FRFPLVSRFL 98 (179)
Q Consensus 42 ~~~Kiv-lG~~gvG---~~~~~~~~----~----~-------~~~~~Ti~~~~~~k--~v~~~~~~~i--wDt~G~e~~~ 98 (179)
..+||+ +|..++| ++..+... . . .....+.|+++... .+... +..+ |||+|+++|.
T Consensus 295 ~~lnIvIIGhvDvGKSTLInrLt~~~~~~G~a~f~~~a~lD~~~~ErerGITIdva~v~f~~~-~~kI~IIDTPGHedF~ 373 (1289)
T 3avx_A 295 PHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDTP-TRHYAHVDCPGHADYV 373 (1289)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHHHHHHSCC---------------------CCSCEEEECS-SCEEEEEECCCHHHHH
T ss_pred CeeEEEEEcCCCCCHHHHHHHHHhhhccccccccccccccccccccccCceeEEEEEEEEcCC-CEEEEEEECCChHHHH
Confidence 468997 9999999 44444321 0 0 01122344433222 23333 4555 9999999999
Q ss_pred hhhhhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCCCCC---CCHHHHHHHHhh
Q psy15036 99 SLTTGLYRGTMGFLLIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQRCRE---VVTPDQIMFGST 175 (179)
Q Consensus 99 ~~~~~~~~~~~~vilvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~~r~---Vs~~e~~~~a~~ 175 (179)
.....+++.+|++|+|+|.++.... ....|+..+.... - |.+|+|+||+|+.+.++ ...+|+++++++
T Consensus 374 ~~mi~gas~AD~aILVVDAtdGv~~-QTrEhL~ll~~lg-I-------P~IIVVINKiDLv~d~e~le~i~eEi~elLk~ 444 (1289)
T 3avx_A 374 KNMITGAAQMDGAILVVAATDGPMP-QTREHILLGRQVG-V-------PYIIVFLNKCDMVDDEELLELVEMEVRELLSQ 444 (1289)
T ss_dssp HHHHHTSCCCSEEEEEEETTTCSCT-THHHHHHHHHHHT-C-------SCEEEEEECCTTCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhCCEEEEEEcCCccCcH-HHHHHHHHHHHcC-C-------CeEEEEEeecccccchhhHHHHHHHHHHHHHh
Confidence 8888899999999999999986433 3344555555431 1 34788999999975222 223566777765
Q ss_pred h
Q psy15036 176 Q 176 (179)
Q Consensus 176 ~ 176 (179)
.
T Consensus 445 ~ 445 (1289)
T 3avx_A 445 Y 445 (1289)
T ss_dssp T
T ss_pred c
Confidence 4
No 180
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=98.81 E-value=4.7e-09 Score=86.30 Aligned_cols=74 Identities=8% Similarity=-0.050 Sum_probs=55.8
Q ss_pred eeCCCchhc-------------hhhhhhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeC
Q psy15036 89 FRFPLVSRF-------------LSLTTGLYRGTMGFLLIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCL 155 (179)
Q Consensus 89 wDt~G~e~~-------------~~~~~~~~~~~~~vilvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK 155 (179)
|||+|..++ ..+...|+++++++|+|+|.++.+... ..|+..++...... .|+++|+||
T Consensus 141 vDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~~--~~~~~l~~~~~~~~------~~~i~V~nK 212 (360)
T 3t34_A 141 IDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAISPANQDLAT--SDAIKISREVDPSG------DRTFGVLTK 212 (360)
T ss_dssp EECCCBCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCGGG--CHHHHHHHHSCTTC------TTEEEEEEC
T ss_pred EECCCCCcCCcCCCchhHHHHHHHHHHHHhhcCCeEEEEeecccCCcCC--HHHHHHHHHhcccC------CCEEEEEeC
Confidence 999999887 677889999999999999887655433 45666666655544 578899999
Q ss_pred CCcCCCCCCCHHHHH
Q psy15036 156 ELLQRCREVVTPDQI 170 (179)
Q Consensus 156 ~Dl~~~r~Vs~~e~~ 170 (179)
+|+.+++....+.+.
T Consensus 213 ~Dl~~~~~~~~~~~~ 227 (360)
T 3t34_A 213 IDLMDKGTDAVEILE 227 (360)
T ss_dssp GGGCCTTCCSHHHHT
T ss_pred CccCCCcccHHHHHc
Confidence 999776666554443
No 181
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=98.80 E-value=8.7e-09 Score=81.89 Aligned_cols=68 Identities=7% Similarity=-0.078 Sum_probs=48.4
Q ss_pred eeCCCch-------------hchhhhhhhhcCCcEEE-EEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEee
Q psy15036 89 FRFPLVS-------------RFLSLTTGLYRGTMGFL-LIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGC 154 (179)
Q Consensus 89 wDt~G~e-------------~~~~~~~~~~~~~~~vi-lvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGn 154 (179)
|||+|.. .+..+...|++.++++| +|+|.++..+......|+..+. ... .|+++|+|
T Consensus 130 vDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~~~~~~~---~~~------~~~i~V~N 200 (299)
T 2aka_B 130 VDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKIAKEVD---PQG------QRTIGVIT 200 (299)
T ss_dssp EECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHHHHHHHHHC---TTC------SSEEEEEE
T ss_pred EeCCCCCCCcCCCCCchHHHHHHHHHHHHHcCCCeEEEEEecCCcchhhhHHHHHHHHhC---CCC------CeEEEEEE
Confidence 9999963 45677888999999887 6899988655544434554443 222 57889999
Q ss_pred CCCcCCCCCCC
Q psy15036 155 LELLQRCREVV 165 (179)
Q Consensus 155 K~Dl~~~r~Vs 165 (179)
|+|+.+.+...
T Consensus 201 K~Dl~~~~~~~ 211 (299)
T 2aka_B 201 KLDLMDEGTDA 211 (299)
T ss_dssp CGGGSCTTCCC
T ss_pred ccccCCCCchH
Confidence 99997655533
No 182
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=98.80 E-value=2.8e-08 Score=88.59 Aligned_cols=62 Identities=8% Similarity=-0.119 Sum_probs=50.3
Q ss_pred eeCCCchhchhhhhhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCC
Q psy15036 89 FRFPLVSRFLSLTTGLYRGTMGFLLIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQR 160 (179)
Q Consensus 89 wDt~G~e~~~~~~~~~~~~~~~vilvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~ 160 (179)
|||+|+++|......+++.+|++|+|+|.++..+......|.. +.. .+ .|+++|+||+|+..
T Consensus 87 iDTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~qt~~~~~~-~~~---~~------ip~ilviNKiD~~~ 148 (704)
T 2rdo_7 87 IDTPGHVDFTIEVERSMRVLDGAVMVYCAVGGVQPQSETVWRQ-ANK---YK------VPRIAFVNKMDRMG 148 (704)
T ss_pred EeCCCccchHHHHHHHHHHCCEEEEEEeCCCCCcHHHHHHHHH-HHH---cC------CCEEEEEeCCCccc
Confidence 9999999999999999999999999999998877766665632 222 22 57788899999865
No 183
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=98.78 E-value=1e-08 Score=91.18 Aligned_cols=107 Identities=11% Similarity=-0.009 Sum_probs=73.7
Q ss_pred ceeeEEE-EeCCCCc---eeEeeec---cCC-----------C-------cccCcceeeeeEEEEEecCCCee--eeCCC
Q psy15036 41 SFNFGTQ-LGRRGIP---LLKHLKY---LGT-----------G-------THGKTVGIVFPAISVTYSIGPRY--FRFPL 93 (179)
Q Consensus 41 ~~~~Kiv-lG~~gvG---~~~~~~~---~~~-----------~-------~~~~Ti~~~~~~k~v~~~~~~~i--wDt~G 93 (179)
+...+|+ +|..++| ++..+.. ... . ....|+... ...+..+ +..+ |||+|
T Consensus 8 ~~~~~I~IvG~~~aGKSTL~~~Ll~~~~~~~~~g~v~~~~~~~D~~~~e~~~giTi~~~--~~~~~~~-~~~i~liDTPG 84 (693)
T 2xex_A 8 EKTRNIGIMAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSA--ATTAAWE-GHRVNIIDTPG 84 (693)
T ss_dssp TTEEEEEEECCGGGTHHHHHHHHHHHHSSCC-------------------------CCS--EEEEEET-TEEEEEECCCC
T ss_pred ccceEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCceecccchhhhhcCceEeee--eEEEEEC-CeeEEEEECcC
Confidence 3467886 9999999 4444331 110 0 112233322 2345556 6666 99999
Q ss_pred chhchhhhhhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCC
Q psy15036 94 VSRFLSLTTGLYRGTMGFLLIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQR 160 (179)
Q Consensus 94 ~e~~~~~~~~~~~~~~~vilvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~ 160 (179)
+..|......+++.+|++|+|+|.++..++.....|.. +.+. + .|+++|+||+|+..
T Consensus 85 ~~df~~~~~~~l~~aD~~llVvDa~~g~~~~~~~~~~~-~~~~---~------~p~ilviNK~Dl~~ 141 (693)
T 2xex_A 85 HVDFTVEVERSLRVLDGAVTVLDAQSGVEPQTETVWRQ-ATTY---G------VPRIVFVNKMDKLG 141 (693)
T ss_dssp CSSCCHHHHHHHHHCSEEEEEEETTTBSCHHHHHHHHH-HHHT---T------CCEEEEEECTTSTT
T ss_pred CcchHHHHHHHHHHCCEEEEEECCCCCCcHHHHHHHHH-HHHc---C------CCEEEEEECCCccc
Confidence 99999989999999999999999999888888777754 3332 2 57888999999975
No 184
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=98.78 E-value=2.9e-08 Score=85.77 Aligned_cols=71 Identities=8% Similarity=-0.107 Sum_probs=51.4
Q ss_pred EEEecCCCee--eeCCCchhchhhhhhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHhC-CccCccccceEEEEeeC
Q psy15036 79 SVTYSIGPRY--FRFPLVSRFLSLTTGLYRGTMGFLLIFDVTNENSFKDVEKWLLQIKVMDG-ALFTHFELQIVFMRGCL 155 (179)
Q Consensus 79 ~v~~~~~~~i--wDt~G~e~~~~~~~~~~~~~~~vilvyDit~~~Sf~~l~~w~~~i~~~~~-~~~~~~~~~~iilvGnK 155 (179)
.+... +..+ |||+|++.|......+++.+|++|+|+|.++...- |...+.+... .+ .|+++++||
T Consensus 76 ~~~~~-~~~i~liDTPG~~df~~~~~~~l~~aD~~IlVvDa~~g~~~-----~t~~~~~~~~~~~------ipiivviNK 143 (529)
T 2h5e_A 76 QFPYH-DCLVNLLDTPGHEDFSEDTYRTLTAVDCCLMVIDAAKGVED-----RTRKLMEVTRLRD------TPILTFMNK 143 (529)
T ss_dssp EEEET-TEEEEEECCCCSTTCCHHHHHGGGGCSEEEEEEETTTCSCH-----HHHHHHHHHTTTT------CCEEEEEEC
T ss_pred EEEEC-CeEEEEEECCCChhHHHHHHHHHHHCCEEEEEEeCCccchH-----HHHHHHHHHHHcC------CCEEEEEcC
Confidence 34445 5555 99999999998888899999999999999886432 2222222222 22 578899999
Q ss_pred CCcCCC
Q psy15036 156 ELLQRC 161 (179)
Q Consensus 156 ~Dl~~~ 161 (179)
+|+...
T Consensus 144 ~Dl~~~ 149 (529)
T 2h5e_A 144 LDRDIR 149 (529)
T ss_dssp TTSCCS
T ss_pred cCCccc
Confidence 999763
No 185
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.76 E-value=5e-09 Score=88.11 Aligned_cols=126 Identities=10% Similarity=0.086 Sum_probs=70.1
Q ss_pred ceeeEEE-EeCCCCc---eeEeeeccCC--Cc-------ccCcceeeeeEEEEEecCCCe--e--eeCCCchhch-----
Q psy15036 41 SFNFGTQ-LGRRGIP---LLKHLKYLGT--GT-------HGKTVGIVFPAISVTYSIGPR--Y--FRFPLVSRFL----- 98 (179)
Q Consensus 41 ~~~~Kiv-lG~~gvG---~~~~~~~~~~--~~-------~~~Ti~~~~~~k~v~~~~~~~--i--wDt~G~e~~~----- 98 (179)
+..|+|+ +|++|+| +++.+.+... .. ..+|++.......++.. +.. + ||++|...+.
T Consensus 29 ~vsf~I~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~t~~~~~i~~v~q~~-~~~~~Ltv~Dt~g~~~~~~~~~~ 107 (418)
T 2qag_C 29 GFEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEG-GVQLLLTIVDTPGFGDAVDNSNC 107 (418)
T ss_dssp CCCEEEEEECCTTSSHHHHHHHHTTCCCCCCCCCSCC-----CCEEEEEECC-------CEEEEEEECC-----------
T ss_pred CCCEEEEEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCccceeeeeEEEEEecC-Ccccceeeeechhhhhhccchhh
Confidence 3567886 9999999 5555543211 11 12344433322222223 322 2 9999987642
Q ss_pred --h------------------hhhhhhcCCcEEEEEEeCCCh-hhHHHHH-HHHHHHHHHhCCccCccccceEEEEeeCC
Q psy15036 99 --S------------------LTTGLYRGTMGFLLIFDVTNE-NSFKDVE-KWLLQIKVMDGALFTHFELQIVFMRGCLE 156 (179)
Q Consensus 99 --~------------------~~~~~~~~~~~vilvyDit~~-~Sf~~l~-~w~~~i~~~~~~~~~~~~~~~iilvGnK~ 156 (179)
. +.+.+++++++.+++|++..- .+|+.+. .|+..+. . . .++|+|+||+
T Consensus 108 ~~~i~~~i~~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~L~~~d~~~lk~L~---~-~------v~iIlVinK~ 177 (418)
T 2qag_C 108 WQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLH---E-K------VNIIPLIAKA 177 (418)
T ss_dssp CHHHHHHHHHHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-CCSCCHHHHHHHHHHT---T-T------SEEEEEEEST
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEEEecCcccCCCHHHHHHHHHHh---c-c------CcEEEEEEcc
Confidence 1 224466777877777777664 5777765 6776664 2 2 5889999999
Q ss_pred CcCCCCCCCH--HHHHHHHhhhC
Q psy15036 157 LLQRCREVVT--PDQIMFGSTQS 177 (179)
Q Consensus 157 Dl~~~r~Vs~--~e~~~~a~~~~ 177 (179)
|+...+++.. +++.+++..++
T Consensus 178 Dll~~~ev~~~k~~i~~~~~~~~ 200 (418)
T 2qag_C 178 DTLTPEECQQFKKQIMKEIQEHK 200 (418)
T ss_dssp TSSCHHHHHHHHHHHHHHHHHHT
T ss_pred cCccHHHHHHHHHHHHHHHHHcC
Confidence 9977677765 67777777654
No 186
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=98.75 E-value=1.4e-09 Score=87.63 Aligned_cols=127 Identities=13% Similarity=0.162 Sum_probs=63.8
Q ss_pred ceeeEEE-EeCCCCc---eeEeeec--cCCCcc--------cCcceeeeeEEEEEecCCCee----eeCCCc-------h
Q psy15036 41 SFNFGTQ-LGRRGIP---LLKHLKY--LGTGTH--------GKTVGIVFPAISVTYSIGPRY----FRFPLV-------S 95 (179)
Q Consensus 41 ~~~~Kiv-lG~~gvG---~~~~~~~--~~~~~~--------~~Ti~~~~~~k~v~~~~~~~i----wDt~G~-------e 95 (179)
+..+||+ +|++|+| +++.+.+ .++..+ .+|++.......++.. +..+ ||++|+ +
T Consensus 16 ~~~~~I~lvG~nG~GKSTLl~~L~g~~~~~~~gi~~~g~~~~~t~~~~~~~~~~q~~-~~~~~ltv~Dt~g~~~~~~~~e 94 (301)
T 2qnr_A 16 GFEFTLMVVGESGLGKSTLINSLFLTDLYPERVISGAAEKIERTVQIEASTVEIEER-GVKLRLTVVDTPGYGDAINCRD 94 (301)
T ss_dssp --CEEEEEEEETTSSHHHHHHHHHC------------------------CEEEEC----CCEEEEEEEEC----------
T ss_pred CCCEEEEEECCCCCCHHHHHHHHhCCCccCCCCcccCCcccCCcceEeeEEEEecCC-CcccCcchhhhhhhhhhcCcHH
Confidence 3568887 9999999 5544332 233222 2343332222222223 3322 999998 7
Q ss_pred hchhhhh-------hhhcCCcEEE-----------EEEeCCC-hhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCC
Q psy15036 96 RFLSLTT-------GLYRGTMGFL-----------LIFDVTN-ENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLE 156 (179)
Q Consensus 96 ~~~~~~~-------~~~~~~~~vi-----------lvyDit~-~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~ 156 (179)
++..+.. .|+++.++.. ++|+... ..+|+.+. .+.+++.... .++++|+||.
T Consensus 95 ~~~~l~~~l~~~~~~~~~~~sgg~rqrv~~ara~~ll~ldePt~~~Ld~~~--~~~l~~l~~~-------~~iilV~~K~ 165 (301)
T 2qnr_A 95 CFKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPLD--VAFMKAIHNK-------VNIVPVIAKA 165 (301)
T ss_dssp -CTTHHHHHHHHHHHHHHHHTSSCCTTCCCCCCCEEEEEECSSSSSCCHHH--HHHHHHHTTT-------SCEEEEECCG
T ss_pred HHHHHHHHHHHHHHHHHHHhCHHhhhhhhhhhhhheeeeecCcccCCCHHH--HHHHHHHHhc-------CCEEEEEEeC
Confidence 7777666 6776654322 4444332 23566554 2334444332 5788999999
Q ss_pred CcCCCCCC--CHHHHHHHHhhhC
Q psy15036 157 LLQRCREV--VTPDQIMFGSTQS 177 (179)
Q Consensus 157 Dl~~~r~V--s~~e~~~~a~~~~ 177 (179)
|+..++++ ..+++.++++++.
T Consensus 166 Dl~~~~e~~~~~~~~~~~~~~~~ 188 (301)
T 2qnr_A 166 DTLTLKERERLKKRILDEIEEHN 188 (301)
T ss_dssp GGSCHHHHHHHHHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHHHHHHHHHHcC
Confidence 99765543 4578888888764
No 187
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=98.73 E-value=9.9e-10 Score=96.16 Aligned_cols=74 Identities=11% Similarity=-0.004 Sum_probs=37.7
Q ss_pred eeeEEEEEecCCCee--eeCCCchhchhhhhhhhcCCcEEEEEEeCCCh----------hhHHHHHHHHHHHHHHhCCcc
Q psy15036 74 VFPAISVTYSIGPRY--FRFPLVSRFLSLTTGLYRGTMGFLLIFDVTNE----------NSFKDVEKWLLQIKVMDGALF 141 (179)
Q Consensus 74 ~~~~k~v~~~~~~~i--wDt~G~e~~~~~~~~~~~~~~~vilvyDit~~----------~Sf~~l~~w~~~i~~~~~~~~ 141 (179)
+.....+..+ +..+ |||+|+++|......+++.+|++|+|+|.++. ++.+.+ ..+.. ...
T Consensus 244 d~~~~~~~~~-~~~i~iiDTPGh~~f~~~~~~~~~~aD~alLVVDa~~g~~e~gi~~~~qt~e~l----~~~~~-lgi-- 315 (592)
T 3mca_A 244 DVASTTFESD-KKIYEIGDAPGHRDFISGMIAGASSADFAVLVVDSSQNNFERGFLENGQTREHA----YLLRA-LGI-- 315 (592)
T ss_dssp ----------------CCEEESSSEEEEECCC-------CCSEEEEEECCSSTTSCSCSSHHHHH----HHHHH-SSC--
T ss_pred EeeEEEEEeC-CeEEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCccccccccchHHHHHH----HHHHH-cCC--
Confidence 3333445555 5555 99999999998888899999999999999853 333322 11222 111
Q ss_pred CccccceEEEEeeCCCcCC
Q psy15036 142 THFELQIVFMRGCLELLQR 160 (179)
Q Consensus 142 ~~~~~~~iilvGnK~Dl~~ 160 (179)
|++|+|+||+|+.+
T Consensus 316 -----p~iIvviNKiDl~~ 329 (592)
T 3mca_A 316 -----SEIVVSVNKLDLMS 329 (592)
T ss_dssp -----CCEEEEEECGGGGT
T ss_pred -----CeEEEEEecccccc
Confidence 45888999999964
No 188
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=98.70 E-value=4.4e-08 Score=86.79 Aligned_cols=75 Identities=9% Similarity=-0.120 Sum_probs=55.6
Q ss_pred eeCCCchhchhhhhhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCCCCCCCHHH
Q psy15036 89 FRFPLVSRFLSLTTGLYRGTMGFLLIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQRCREVVTPD 168 (179)
Q Consensus 89 wDt~G~e~~~~~~~~~~~~~~~vilvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~~r~Vs~~e 168 (179)
|||+|+++|......+++.+|++++|+|.++.-+... ..|+..+... . .|+++|+||+|+. ....+.
T Consensus 79 iDTpG~~~f~~~~~~~l~~ad~~ilVvD~~~g~~~qt-~~~~~~~~~~---~------ip~ilv~NKiD~~---~~~~~~ 145 (665)
T 2dy1_A 79 LDAPGYGDFVGEIRGALEAADAALVAVSAEAGVQVGT-ERAWTVAERL---G------LPRMVVVTKLDKG---GDYYAL 145 (665)
T ss_dssp EECCCSGGGHHHHHHHHHHCSEEEEEEETTTCSCHHH-HHHHHHHHHT---T------CCEEEEEECGGGC---CCHHHH
T ss_pred EeCCCccchHHHHHHHHhhcCcEEEEEcCCcccchhH-HHHHHHHHHc---c------CCEEEEecCCchh---hhHHHH
Confidence 9999999999989999999999999999887654433 3444444432 2 5778889999987 334555
Q ss_pred HHHHHhhh
Q psy15036 169 QIMFGSTQ 176 (179)
Q Consensus 169 ~~~~a~~~ 176 (179)
..++++..
T Consensus 146 ~~~l~~~l 153 (665)
T 2dy1_A 146 LEDLRSTL 153 (665)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 66666543
No 189
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=98.67 E-value=9.5e-09 Score=89.22 Aligned_cols=64 Identities=8% Similarity=-0.011 Sum_probs=51.4
Q ss_pred eeCCCchh-----------chhhhhhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCC
Q psy15036 89 FRFPLVSR-----------FLSLTTGLYRGTMGFLLIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLEL 157 (179)
Q Consensus 89 wDt~G~e~-----------~~~~~~~~~~~~~~vilvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~D 157 (179)
|||+|... |......+++.+|++++|+|.++....+....|++.+.+. . .|+++|+||+|
T Consensus 159 IDTPG~~~~~~~~~~~~~~f~~~~~~~l~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~---~------~pvilVlNK~D 229 (550)
T 2qpt_A 159 IDTPGILSGAKQRVSRGYDFPAVLRWFAERVDLIILLFDAHKLEISDEFSEAIGALRGH---E------DKIRVVLNKAD 229 (550)
T ss_dssp EECCCBCC-------CCSCHHHHHHHHHHHCSEEEEEEETTSCCCCHHHHHHHHHTTTC---G------GGEEEEEECGG
T ss_pred EECcCCCCcchhHHHHHhhHHHHHHHHHHhCCEEEEEEeCCcCCCCHHHHHHHHHHHhc---C------CCEEEEEECCC
Confidence 99999875 5567778899999999999999877777777787766532 2 47889999999
Q ss_pred cCCC
Q psy15036 158 LQRC 161 (179)
Q Consensus 158 l~~~ 161 (179)
+..+
T Consensus 230 l~~~ 233 (550)
T 2qpt_A 230 MVET 233 (550)
T ss_dssp GSCH
T ss_pred ccCH
Confidence 8653
No 190
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=98.67 E-value=3.7e-08 Score=87.71 Aligned_cols=68 Identities=13% Similarity=-0.013 Sum_probs=52.5
Q ss_pred eeCCCchh---chhhhhhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCCCCCCC
Q psy15036 89 FRFPLVSR---FLSLTTGLYRGTMGFLLIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQRCREVV 165 (179)
Q Consensus 89 wDt~G~e~---~~~~~~~~~~~~~~vilvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~~r~Vs 165 (179)
|||+|... .......|++++|++|+|+|.++..++..+..|.+.+... . .|+++|+||+|+...+.++
T Consensus 179 iDTPGl~~~~~~~~~~~~~i~~aD~vL~Vvda~~~~s~~e~~~l~~~l~~~---~------~~iiiVlNK~Dl~~~~~~~ 249 (695)
T 2j69_A 179 VDSPGLNDTEARNELSLGYVNNCHAILFVMRASQPCTLGERRYLENYIKGR---G------LTVFFLVNAWDQVRESLID 249 (695)
T ss_dssp EECCCHHHHHTCHHHHTHHHHSSSEEEEEEETTSTTCHHHHHHHHHHTTTS---C------CCEEEEEECGGGGGGGCSS
T ss_pred EECCCCCchhhHHHHHHHHHHhCCEEEEEEeCCCccchhHHHHHHHHHHhh---C------CCEEEEEECcccccccccC
Confidence 99999765 3456678999999999999999998998887776554321 2 4688999999997654333
No 191
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=98.57 E-value=1e-07 Score=76.37 Aligned_cols=66 Identities=8% Similarity=0.006 Sum_probs=43.3
Q ss_pred eeCCCchh-------------chhhhhhhhcCCcEEEEEEeCCChhhH-HHHHHHHHHHHHHhCCccCccccceEEEEee
Q psy15036 89 FRFPLVSR-------------FLSLTTGLYRGTMGFLLIFDVTNENSF-KDVEKWLLQIKVMDGALFTHFELQIVFMRGC 154 (179)
Q Consensus 89 wDt~G~e~-------------~~~~~~~~~~~~~~vilvyDit~~~Sf-~~l~~w~~~i~~~~~~~~~~~~~~~iilvGn 154 (179)
|||+|..+ +......+++++|++++|+|.++.... .....+...+ .... .|+++|+|
T Consensus 136 vDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iilvvd~~~~~~~~~~~~~i~~~~---~~~~------~~~i~v~N 206 (315)
T 1jwy_B 136 VDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTDLANSDALQLAKEV---DPEG------KRTIGVIT 206 (315)
T ss_dssp EECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSCSTTCSHHHHHHHH---CSSC------SSEEEEEE
T ss_pred EECCCCccCCCCCCchhHHHHHHHHHHHHHcCCCeEEEEEEecCcchhhhHHHHHHHHh---CCCC------CcEEEEEc
Confidence 99999753 556778899999999999998554311 1111222222 2222 57889999
Q ss_pred CCCcCCCCC
Q psy15036 155 LELLQRCRE 163 (179)
Q Consensus 155 K~Dl~~~r~ 163 (179)
|+|+.+.+.
T Consensus 207 K~Dl~~~~~ 215 (315)
T 1jwy_B 207 KLDLMDKGT 215 (315)
T ss_dssp CTTSSCSSC
T ss_pred CcccCCcch
Confidence 999976544
No 192
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=98.41 E-value=3.7e-10 Score=86.31 Aligned_cols=128 Identities=11% Similarity=-0.057 Sum_probs=68.6
Q ss_pred eeeEEE-EeCCCCc---eeEeee-ccCCCcccCcceeeee------------EEEEEecCCCee----eeCCCchhchhh
Q psy15036 42 FNFGTQ-LGRRGIP---LLKHLK-YLGTGTHGKTVGIVFP------------AISVTYSIGPRY----FRFPLVSRFLSL 100 (179)
Q Consensus 42 ~~~Kiv-lG~~gvG---~~~~~~-~~~~~~~~~Ti~~~~~------------~k~v~~~~~~~i----wDt~G~e~~~~~ 100 (179)
..+||+ +|+.||| ++.++. ..+...+.++++.++. .+.+.++++..+ ||+ ++.+..+
T Consensus 37 ~~~~i~ivG~~gvGKTtl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~l 114 (226)
T 2hf9_A 37 GVVAFDFMGAIGSGKTLLIEKLIDNLKDKYKIACIAGDVIAKFDAERMEKHGAKVVPLNTGKECHLDAHLV--GHALEDL 114 (226)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHHHHTTTCCEEEEEEETTTHHHHHHHHTTTCEEEEEECTTCSSCCHHHH--HHHHTTS
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEECCCCCCccHHHHHhcCCcEEEecCCceEeccHHHH--HHHHHHH
Confidence 357887 9999999 555554 4455556677777664 345555412222 776 5666554
Q ss_pred h----hhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHH-hCCccCc----cccceEEEEeeCCCcCCCCCCCHHHHHH
Q psy15036 101 T----TGLYRGTMGFLLIFDVTNENSFKDVEKWLLQIKVM-DGALFTH----FELQIVFMRGCLELLQRCREVVTPDQIM 171 (179)
Q Consensus 101 ~----~~~~~~~~~vilvyDit~~~Sf~~l~~w~~~i~~~-~~~~~~~----~~~~~iilvGnK~Dl~~~r~Vs~~e~~~ 171 (179)
. ..++.+++|+ +..+.||+....|...+... ....... .-..|.++|+||+|+.+++.+..+++.+
T Consensus 115 ~~~~~d~~~id~~g~-----i~~~~s~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~iiv~NK~Dl~~~~~~~~~~~~~ 189 (226)
T 2hf9_A 115 NLDEIDLLFIENVGN-----LICPADFDLGTHKRIVVISTTEGDDTIEKHPGIMKTADLIVINKIDLADAVGADIKKMEN 189 (226)
T ss_dssp CGGGCSEEEEECCSC-----SSGGGGCCCSCSEEEEEEEGGGCTTTTTTCHHHHTTCSEEEEECGGGHHHHTCCHHHHHH
T ss_pred hcCCCCEEEEeCCCC-----ccCcchhhhccCcEEEEEecCcchhhHhhhhhHhhcCCEEEEeccccCchhHHHHHHHHH
Confidence 4 2233333221 12344444333443222211 1111000 0002347889999997766678888888
Q ss_pred HHhhh
Q psy15036 172 FGSTQ 176 (179)
Q Consensus 172 ~a~~~ 176 (179)
++++.
T Consensus 190 ~~~~~ 194 (226)
T 2hf9_A 190 DAKRI 194 (226)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 87754
No 193
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=98.34 E-value=1.3e-06 Score=72.10 Aligned_cols=87 Identities=13% Similarity=0.070 Sum_probs=52.9
Q ss_pred eEEE-EeCCCCc---eeEeeeccC--CCcc-cCcceeeeeEEEEEecCC-----------------Cee--eeCCCchhc
Q psy15036 44 FGTQ-LGRRGIP---LLKHLKYLG--TGTH-GKTVGIVFPAISVTYSIG-----------------PRY--FRFPLVSRF 97 (179)
Q Consensus 44 ~Kiv-lG~~gvG---~~~~~~~~~--~~~~-~~Ti~~~~~~k~v~~~~~-----------------~~i--wDt~G~e~~ 97 (179)
+||. +|.++|| +++.+.+.. ...+ .+|++.... .+.++ + ..+ |||+|+.++
T Consensus 3 ~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p~~g--~v~~~-~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~ 79 (363)
T 1jal_A 3 FKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTG--VVPMP-DPRLDALAEIVKPERILPTTMEFVDIAGLVAG 79 (363)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSS--EEECC-CHHHHHHHHHHCCSEEECCEEEEEECCSCCTT
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceECceEE--EEecC-CcccceeeeeecccceeeeEEEEEECCCCccc
Confidence 6886 9999999 555555321 1122 124443332 23444 4 234 999999876
Q ss_pred h----hhhh---hhhcCCcEEEEEEeCCC----------hhhHHHHHHHHHHH
Q psy15036 98 L----SLTT---GLYRGTMGFLLIFDVTN----------ENSFKDVEKWLLQI 133 (179)
Q Consensus 98 ~----~~~~---~~~~~~~~vilvyDit~----------~~Sf~~l~~w~~~i 133 (179)
. .+.. .+++++|++++|+|.++ .++++.+..|..++
T Consensus 80 a~~~~gl~~~fl~~ir~ad~il~VvD~~~~~~v~~v~~~~dp~~d~~~i~~EL 132 (363)
T 1jal_A 80 ASKGEGLGNKFLANIRETDAIGHVVRCFENDDIVHVAGKIDPLDDIDTINTEL 132 (363)
T ss_dssp HHHHGGGTCCHHHHHHTCSEEEEEEECSCC---------CCHHHHHHHHHHHH
T ss_pred ccccchHHHHHHHHHHhcCeEEEEEecCCCCceeeecCCcChHHHHHHHHHHH
Confidence 4 2332 35799999999999987 25666655444443
No 194
>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens}
Probab=98.33 E-value=3.9e-07 Score=69.86 Aligned_cols=78 Identities=8% Similarity=0.037 Sum_probs=45.4
Q ss_pred eCCCchhchhhhhhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCC-CcCCCCCCCHHH
Q psy15036 90 RFPLVSRFLSLTTGLYRGTMGFLLIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLE-LLQRCREVVTPD 168 (179)
Q Consensus 90 Dt~G~e~~~~~~~~~~~~~~~vilvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~-Dl~~~r~Vs~~e 168 (179)
+.+||++++.+++.||.++|++|+|.|.+|++-++ .+.-+.++.....+.. .....|+++.+||. |+.. .++..|
T Consensus 108 ~~GGQ~klRplWr~Yy~~TdglIfVVDSsD~~R~e-ak~EL~eL~~mL~ee~-~L~gapLLVlANKqqDlp~--Ams~~E 183 (227)
T 3l82_B 108 QQGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHE-WQDEFSHIMAMTDPAF-GSSGRPLLVLSCISQGDVK--RMPCFY 183 (227)
T ss_dssp ---------CCHHHHHHHCSEEEEEEECBTTCCCC-HHHHHHHHHHHSCTTS-SCSCSCEEEEEEESSTTSC--BCCHHH
T ss_pred ccCcHHHHHHHHHHHhcCCCEEEEEeccccHhHHH-HHHHHHHHHHHhcchh-hhCCCeEEEEeCCCcCccC--CCCHHH
Confidence 56799999999999999999999999999986654 4443333333221110 00115777889985 7743 777776
Q ss_pred HHH
Q psy15036 169 QIM 171 (179)
Q Consensus 169 ~~~ 171 (179)
..+
T Consensus 184 I~e 186 (227)
T 3l82_B 184 LAH 186 (227)
T ss_dssp HHH
T ss_pred HHH
Confidence 554
No 195
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=98.31 E-value=7.1e-07 Score=74.51 Aligned_cols=45 Identities=16% Similarity=0.121 Sum_probs=26.7
Q ss_pred eeCCCchh----chhhhh---hhhcCCcEEEEEEeCCCh-----------hhHHHHHHHHHHH
Q psy15036 89 FRFPLVSR----FLSLTT---GLYRGTMGFLLIFDVTNE-----------NSFKDVEKWLLQI 133 (179)
Q Consensus 89 wDt~G~e~----~~~~~~---~~~~~~~~vilvyDit~~-----------~Sf~~l~~w~~~i 133 (179)
|||+|+.+ +..+.. .+++++|++++|+|.++. ++++.+..|..++
T Consensus 76 vDtpG~~~~a~~~~~l~~~~l~~i~~aD~il~VvD~~~~~~~~g~~~~~~dp~~d~~~i~~EL 138 (397)
T 1wxq_A 76 VDVAGLVPGAHEGRGLGNKFLDDLRMASALIHVVDATGKTDPEGQPTDYHDPVEDIEFLEREI 138 (397)
T ss_dssp EECC---------------CCCSSTTCSEEEEEEETTCCBCTTSCBCSCCCHHHHHHHHHHHH
T ss_pred EECCCcccchhhhhhHHHHHHHHHhcCCEEEEEEecccccCCCCcccCCCCcHHHHHHHHHHH
Confidence 99999864 233333 347899999999999986 6666655444443
No 196
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=98.30 E-value=8e-07 Score=72.80 Aligned_cols=67 Identities=12% Similarity=-0.005 Sum_probs=43.1
Q ss_pred eeCCCch-------------hchhhhhhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeC
Q psy15036 89 FRFPLVS-------------RFLSLTTGLYRGTMGFLLIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCL 155 (179)
Q Consensus 89 wDt~G~e-------------~~~~~~~~~~~~~~~vilvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK 155 (179)
|||+|.. .+..+...|++.++.+|+++...+. .+.+ ..|...++...+.. .|+++|+||
T Consensus 135 vDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiL~v~~a~~-~~~~-~~~~~i~~~~~~~~------~~~i~V~NK 206 (353)
T 2x2e_A 135 VDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANS-DLAN-SDALKVAKEVDPQG------QRTIGVITK 206 (353)
T ss_dssp EECCCBCSSCCTTCCTTHHHHHHHHHHHHHTSTTEEEEEEEETTS-CGGG-CHHHHHHHHHCTTC------TTEEEEEEC
T ss_pred EECCCCCCCccCCCchhHHHHHHHHHHHHHcCCCeEEEEEecCCC-ccch-hHHHHHHHHhCcCC------CceEEEecc
Confidence 9999952 5667788899888888877644332 2222 12333344444333 578899999
Q ss_pred CCcCCCCC
Q psy15036 156 ELLQRCRE 163 (179)
Q Consensus 156 ~Dl~~~r~ 163 (179)
+|+.+++.
T Consensus 207 ~Dl~~~~~ 214 (353)
T 2x2e_A 207 LDLMDEGT 214 (353)
T ss_dssp GGGSCTTC
T ss_pred ccccCcch
Confidence 99976443
No 197
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=98.21 E-value=1.5e-06 Score=71.80 Aligned_cols=69 Identities=19% Similarity=0.228 Sum_probs=53.0
Q ss_pred CCCchhchhhhhhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCCCCCCCHHHHH
Q psy15036 91 FPLVSRFLSLTTGLYRGTMGFLLIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQRCREVVTPDQI 170 (179)
Q Consensus 91 t~G~e~~~~~~~~~~~~~~~vilvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~~r~Vs~~e~~ 170 (179)
...+++|+.+.+.+++.++++++|+|+++++ ..|..++.+.... .|+++|+||+||.. +.+..++.+
T Consensus 53 ~~~~e~f~~~l~~i~~~~~~il~VvD~~d~~-----~~~~~~l~~~~~~-------~p~ilV~NK~DL~~-~~~~~~~~~ 119 (368)
T 3h2y_A 53 SLTDDDFLRILNGIGKSDALVVKIVDIFDFN-----GSWLPGLHRFVGN-------NKVLLVGNKADLIP-KSVKHDKVK 119 (368)
T ss_dssp ---CHHHHHHHHHHHHSCCEEEEEEETTSHH-----HHCCTTHHHHSSS-------SCEEEEEECGGGSC-TTSCHHHHH
T ss_pred CCCHHHHHHHHHHHhccCcEEEEEEECCCCc-----ccHHHHHHHHhCC-------CcEEEEEEChhcCC-cccCHHHHH
Confidence 3457899999999999999999999999863 5688888777654 47889999999965 345556665
Q ss_pred HH
Q psy15036 171 MF 172 (179)
Q Consensus 171 ~~ 172 (179)
++
T Consensus 120 ~~ 121 (368)
T 3h2y_A 120 HW 121 (368)
T ss_dssp HH
T ss_pred HH
Confidence 55
No 198
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=98.20 E-value=2.4e-06 Score=71.77 Aligned_cols=106 Identities=17% Similarity=0.095 Sum_probs=66.2
Q ss_pred EEeCCCCc---eeEeeeccCC--Cccc-CcceeeeeEEEEEecCC-Cee--eeCCCchh----chhhhhhhh---cCCcE
Q psy15036 47 QLGRRGIP---LLKHLKYLGT--GTHG-KTVGIVFPAISVTYSIG-PRY--FRFPLVSR----FLSLTTGLY---RGTMG 110 (179)
Q Consensus 47 vlG~~gvG---~~~~~~~~~~--~~~~-~Ti~~~~~~k~v~~~~~-~~i--wDt~G~e~----~~~~~~~~~---~~~~~ 110 (179)
|+|.+|+| +++.+..... ..+. .|+... ...+.++ + ..+ ||++|... +..+...|+ ..++.
T Consensus 162 LVG~~gAGKSTLL~~Lsg~~~~i~~~~ftTl~p~--~G~V~~~-~~~~~~l~DtpGli~~a~~~~~L~~~fl~~~era~~ 238 (416)
T 1udx_A 162 LVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPN--LGVVEVS-EEERFTLADIPGIIEGASEGKGLGLEFLRHIARTRV 238 (416)
T ss_dssp EECCGGGCHHHHHHHHCSSCCEECCCTTCSSCCE--EEEEECS-SSCEEEEEECCCCCCCGGGSCCSCHHHHHHHTSSSE
T ss_pred EECCCCCcHHHHHHHHHcCCccccCcccceecce--eeEEEec-CcceEEEEeccccccchhhhhhhhHHHHHHHHHHHh
Confidence 39999999 5555443211 1111 122221 1234455 4 444 99999743 333434444 46999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCC
Q psy15036 111 FLLIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQR 160 (179)
Q Consensus 111 vilvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~ 160 (179)
++.++|++ ++++.+++.|.+++..+...- ...|.+||.||+|+..
T Consensus 239 lL~vvDls-~~~~~~ls~g~~el~~la~aL----~~~P~ILVlNKlDl~~ 283 (416)
T 1udx_A 239 LLYVLDAA-DEPLKTLETLRKEVGAYDPAL----LRRPSLVALNKVDLLE 283 (416)
T ss_dssp EEEEEETT-SCHHHHHHHHHHHHHHHCHHH----HHSCEEEEEECCTTSC
T ss_pred hhEEeCCc-cCCHHHHHHHHHHHHHHhHHh----hcCCEEEEEECCChhh
Confidence 99999999 889999999999887764210 0036677789999976
No 199
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=98.09 E-value=4e-06 Score=67.16 Aligned_cols=73 Identities=5% Similarity=-0.002 Sum_probs=48.7
Q ss_pred eCCCchhchhhhhhhhcCCcEEEEEEeCCChhhHHHHHHHHHHH---H-HHh-CCccCccccceEEEEeeC-CCcCCCCC
Q psy15036 90 RFPLVSRFLSLTTGLYRGTMGFLLIFDVTNENSFKDVEKWLLQI---K-VMD-GALFTHFELQIVFMRGCL-ELLQRCRE 163 (179)
Q Consensus 90 Dt~G~e~~~~~~~~~~~~~~~vilvyDit~~~Sf~~l~~w~~~i---~-~~~-~~~~~~~~~~~iilvGnK-~Dl~~~r~ 163 (179)
|.+||++.+.+++.||.++|++|+|.|.+|++-++ .+.-+.++ . +.. ..+ .|+++.+|| -|+.+ .
T Consensus 193 ~~GGQ~~lRplWr~Yy~~tdglIfVVDSsDreRle-ak~EL~eL~~mL~e~~~l~~------apLLVfANKkQDlp~--A 263 (312)
T 3l2o_B 193 QQGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHE-WQDEFSHIMAMTDPAFGSSG------RPLLVLSCISQGDVK--R 263 (312)
T ss_dssp ----CCCCCHHHHHHHHHCSEEEECCBCBTTCCCC-HHHHHHHHHHHHCHHHHCTT------CCEEEEEEESSTTSC--B
T ss_pred CCCCHHHHHHHHHHHhcCCCEEEEEecCCcHhHHH-HHHHHHHHHHHhcchhhcCC------CeEEEEeCCcccccC--C
Confidence 46899999999999999999999999999997654 33322222 1 211 122 577777896 58854 6
Q ss_pred CCHHHHHH
Q psy15036 164 VVTPDQIM 171 (179)
Q Consensus 164 Vs~~e~~~ 171 (179)
++.+|..+
T Consensus 264 ms~~EI~e 271 (312)
T 3l2o_B 264 MPCFYLAH 271 (312)
T ss_dssp CCHHHHHH
T ss_pred CCHHHHHH
Confidence 77766554
No 200
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=97.90 E-value=6.9e-06 Score=67.80 Aligned_cols=71 Identities=15% Similarity=0.119 Sum_probs=51.4
Q ss_pred eeCCCchhchhhhhhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCCCCCCCHHH
Q psy15036 89 FRFPLVSRFLSLTTGLYRGTMGFLLIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQRCREVVTPD 168 (179)
Q Consensus 89 wDt~G~e~~~~~~~~~~~~~~~vilvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~~r~Vs~~e 168 (179)
+....+++|+++.+.+++.++++++|+|++++++ .|.+++.+.... .|+++|+||+||.. +.+..++
T Consensus 53 ~v~~~~e~f~~~L~~~~~~~~lil~VvD~~d~~~-----s~~~~l~~~l~~-------~piilV~NK~DLl~-~~~~~~~ 119 (369)
T 3ec1_A 53 DVPLDDDDFLSMLHRIGESKALVVNIVDIFDFNG-----SFIPGLPRFAAD-------NPILLVGNKADLLP-RSVKYPK 119 (369)
T ss_dssp ------CHHHHHHHHHHHHCCEEEEEEETTCSGG-----GCCSSHHHHCTT-------SCEEEEEECGGGSC-TTCCHHH
T ss_pred CCcCCHHHHHHHHHHhhccCcEEEEEEECCCCCC-----chhhHHHHHhCC-------CCEEEEEEChhcCC-CccCHHH
Confidence 5555689999999999999999999999999874 577777766554 47889999999975 3455555
Q ss_pred HHHH
Q psy15036 169 QIMF 172 (179)
Q Consensus 169 ~~~~ 172 (179)
.+++
T Consensus 120 ~~~~ 123 (369)
T 3ec1_A 120 LLRW 123 (369)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5554
No 201
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=97.73 E-value=1.7e-05 Score=59.79 Aligned_cols=70 Identities=10% Similarity=-0.172 Sum_probs=43.2
Q ss_pred eeCCCchhchhhhhhh-hcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCCCCCCCHH
Q psy15036 89 FRFPLVSRFLSLTTGL-YRGTMGFLLIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQRCREVVTP 167 (179)
Q Consensus 89 wDt~G~e~~~~~~~~~-~~~~~~vilvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~~r~Vs~~ 167 (179)
|||+|+- ..+.+ ....+++++|+|.++... ....+... . . .|+++|+||+|+.+.+.+..+
T Consensus 114 idt~G~~----~~~~~~~~~~~~~i~vvd~~~~~~--~~~~~~~~---~---~------~~~iiv~NK~Dl~~~~~~~~~ 175 (221)
T 2wsm_A 114 IENVGNL----ICPVDFDLGENYRVVMVSVTEGDD--VVEKHPEI---F---R------VADLIVINKVALAEAVGADVE 175 (221)
T ss_dssp EEEEEBS----SGGGGCCCSCSEEEEEEEGGGCTT--HHHHCHHH---H---H------TCSEEEEECGGGHHHHTCCHH
T ss_pred EeCCCCC----CCCchhccccCcEEEEEeCCCcch--hhhhhhhh---h---h------cCCEEEEecccCCcchhhHHH
Confidence 8998851 11222 246789999999887542 11112111 1 1 356788999999765556777
Q ss_pred HHHHHHhhh
Q psy15036 168 DQIMFGSTQ 176 (179)
Q Consensus 168 e~~~~a~~~ 176 (179)
+..+++++.
T Consensus 176 ~~~~~~~~~ 184 (221)
T 2wsm_A 176 KMKADAKLI 184 (221)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 777776653
No 202
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=97.72 E-value=7.8e-05 Score=61.53 Aligned_cols=31 Identities=6% Similarity=-0.010 Sum_probs=24.4
Q ss_pred eeCCCchhch----hhhh---hhhcCCcEEEEEEeCCC
Q psy15036 89 FRFPLVSRFL----SLTT---GLYRGTMGFLLIFDVTN 119 (179)
Q Consensus 89 wDt~G~e~~~----~~~~---~~~~~~~~vilvyDit~ 119 (179)
||++|+.++. .+.. .+++.+|++++|+|.++
T Consensus 74 vDtpGl~~~a~~~~~lg~~fl~~ir~ad~ii~VvD~~~ 111 (368)
T 2dby_A 74 VDIAGLVKGAHKGEGLGNQFLAHIREVAAIAHVLRCFP 111 (368)
T ss_dssp EECCSCCCCCCSSSCTTHHHHHHHHTCSEEEEEEECCC
T ss_pred EECCCccccccccchHHHHHHHHHHhCCEEEEEEECCC
Confidence 9999998753 2322 35799999999999986
No 203
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=97.55 E-value=2.4e-05 Score=65.25 Aligned_cols=80 Identities=6% Similarity=0.003 Sum_probs=39.4
Q ss_pred eeEEE-EeCCCCc---eeEeeeccC-CCcc--cCcceeeeeEEEEEecCCC-----------------ee--eeCCCchh
Q psy15036 43 NFGTQ-LGRRGIP---LLKHLKYLG-TGTH--GKTVGIVFPAISVTYSIGP-----------------RY--FRFPLVSR 96 (179)
Q Consensus 43 ~~Kiv-lG~~gvG---~~~~~~~~~-~~~~--~~Ti~~~~~~k~v~~~~~~-----------------~i--wDt~G~e~ 96 (179)
.+||. +|.+||| +++.+.+.. .... ..|+... ...+.+. +. .+ ||++|..+
T Consensus 22 ~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~--~g~v~v~-~~r~~~l~~~~~p~~~~~~~i~lvDtpGl~~ 98 (396)
T 2ohf_A 22 SLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPN--ESRVPVP-DERFDFLCQYHKPASKIPAFLNVVDIAGLVK 98 (396)
T ss_dssp CCCEEEECCSSSSHHHHHHHHHC-------------CCS--EEEEECC-CHHHHHHHHHHCCSEEECCEEEEEECCC---
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCce--eEEEEEC-CccceeeccccCcccccccccEEEECCCccc
Confidence 47786 9999999 555555321 1111 1233322 2344444 32 23 99999987
Q ss_pred chh-------hhhhhhcCCcEEEEEEeCCChhhHHH
Q psy15036 97 FLS-------LTTGLYRGTMGFLLIFDVTNENSFKD 125 (179)
Q Consensus 97 ~~~-------~~~~~~~~~~~vilvyDit~~~Sf~~ 125 (179)
+.+ ....+++++|++++|+|.++.+++.+
T Consensus 99 ~as~~~glg~~~l~~ir~aD~Il~VvD~~~~~~i~~ 134 (396)
T 2ohf_A 99 GAHNGQGLGNAFLSHISACDGIFHLTRAFEDDDITH 134 (396)
T ss_dssp --------CCHHHHHHHTSSSEEEEEEC--------
T ss_pred ccchhhHHHHHHHHHHHhcCeEEEEEecCCCcchhh
Confidence 654 34568899999999999988766543
No 204
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=96.80 E-value=0.0026 Score=48.96 Aligned_cols=65 Identities=12% Similarity=-0.119 Sum_probs=37.0
Q ss_pred eeCCCchhchhhhh------hhhcCCcEEEEEEeCCC---hhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcC
Q psy15036 89 FRFPLVSRFLSLTT------GLYRGTMGFLLIFDVTN---ENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQ 159 (179)
Q Consensus 89 wDt~G~e~~~~~~~------~~~~~~~~vilvyDit~---~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~ 159 (179)
|||+|+..+..... ..+.. ++++++.|... ..++..+..+....... .. .|+++|+||+|+.
T Consensus 114 iDtpG~~~~~~~~~l~~~~~~~~~~-~~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~-~~-------~p~~iv~NK~D~~ 184 (262)
T 1yrb_A 114 IDTPGQMETFLFHEFGVRLMENLPY-PLVVYISDPEILKKPNDYCFVRFFALLIDLR-LG-------ATTIPALNKVDLL 184 (262)
T ss_dssp EECCSSHHHHHHSHHHHHHHHTSSS-CEEEEEECGGGCCSHHHHHHHHHHHHHHHHH-HT-------SCEEEEECCGGGC
T ss_pred EeCCCccchhhhhhhHHHHHHHHhh-ceEEeccchhhhcCHHHHHHHHHHHHHHhcc-cC-------CCeEEEEeccccc
Confidence 99999987654332 14455 77777777653 33333332222211111 12 4677899999997
Q ss_pred CCC
Q psy15036 160 RCR 162 (179)
Q Consensus 160 ~~r 162 (179)
..+
T Consensus 185 ~~~ 187 (262)
T 1yrb_A 185 SEE 187 (262)
T ss_dssp CHH
T ss_pred ccc
Confidence 543
No 205
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=96.67 E-value=0.0055 Score=53.01 Aligned_cols=72 Identities=10% Similarity=-0.031 Sum_probs=52.6
Q ss_pred EEEEecCCCee--eeCCCchhchhhhhhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeC
Q psy15036 78 ISVTYSIGPRY--FRFPLVSRFLSLTTGLYRGTMGFLLIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCL 155 (179)
Q Consensus 78 k~v~~~~~~~i--wDt~G~e~~~~~~~~~~~~~~~vilvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK 155 (179)
..+..+ +..+ .||+|+..|..-...-++-+|++|+|+|...--.-+-..-| ..+.++ + .|++++.||
T Consensus 93 ~~~~~~-~~~iNlIDTPGHvDF~~Ev~raL~~~DgAvlVvda~~GV~~qT~~v~-~~a~~~---~------lp~i~fINK 161 (548)
T 3vqt_A 93 MQFPYR-DRVVNLLDTPGHQDFSEDTYRVLTAVDSALVVIDAAKGVEAQTRKLM-DVCRMR---A------TPVMTFVNK 161 (548)
T ss_dssp EEEEET-TEEEEEECCCCGGGCSHHHHHHHHSCSEEEEEEETTTBSCHHHHHHH-HHHHHT---T------CCEEEEEEC
T ss_pred EEEEEC-CEEEEEEeCCCcHHHHHHHHHHHHhcCceEEEeecCCCcccccHHHH-HHHHHh---C------CceEEEEec
Confidence 345556 7666 99999999998888889999999999998775333444455 333332 2 467777899
Q ss_pred CCcCC
Q psy15036 156 ELLQR 160 (179)
Q Consensus 156 ~Dl~~ 160 (179)
.|...
T Consensus 162 ~Dr~~ 166 (548)
T 3vqt_A 162 MDREA 166 (548)
T ss_dssp TTSCC
T ss_pred ccchh
Confidence 99864
No 206
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=96.65 E-value=3.8e-05 Score=65.12 Aligned_cols=93 Identities=11% Similarity=-0.070 Sum_probs=55.5
Q ss_pred eeEEE-EeCCCCc---eeEeeeccCCCcccCcceeeeeEEEEEecCCC--e--eeeCCCchh--chhhh--------hhh
Q psy15036 43 NFGTQ-LGRRGIP---LLKHLKYLGTGTHGKTVGIVFPAISVTYSIGP--R--YFRFPLVSR--FLSLT--------TGL 104 (179)
Q Consensus 43 ~~Kiv-lG~~gvG---~~~~~~~~~~~~~~~Ti~~~~~~k~v~~~~~~--~--iwDt~G~e~--~~~~~--------~~~ 104 (179)
..+|+ +|.+|+| +.+.+.........+|.+........... +. . +||..|++. ++... ..+
T Consensus 39 ~~~IvlvGlpGsGKSTia~~La~~l~~~~~~t~~~~~d~~r~~~~-g~~~~~~ifd~~g~~~~r~re~~~~~~l~~~~~~ 117 (469)
T 1bif_A 39 PTLIVMVGLPARGKTYISKKLTRYLNFIGVPTREFNVGQYRRDMV-KTYKSFEFFLPDNEEGLKIRKQCALAALNDVRKF 117 (469)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHHHHH-CSCCCGGGGCTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHhccCCCceEEecchhhhhhc-cCCCcccccCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 46777 9999999 44444321111223343322110001112 22 1 299999843 33332 567
Q ss_pred hcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHh
Q psy15036 105 YRGTMGFLLIFDVTNENSFKDVEKWLLQIKVMD 137 (179)
Q Consensus 105 ~~~~~~vilvyDit~~~Sf~~l~~w~~~i~~~~ 137 (179)
+..+.|.++|+|.++. +++....|++.+++..
T Consensus 118 l~~~~G~~vV~D~tn~-~~~~R~~~~~~~~~~~ 149 (469)
T 1bif_A 118 LSEEGGHVAVFDATNT-TRERRAMIFNFGEQNG 149 (469)
T ss_dssp HHTTCCSEEEEESCCC-SHHHHHHHHHHHHHHT
T ss_pred HHhCCCCEEEEeCCCC-CHHHHHHHHHHHHhcC
Confidence 7788899999999998 7788888988877653
No 207
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=96.40 E-value=0.0048 Score=48.84 Aligned_cols=55 Identities=13% Similarity=-0.141 Sum_probs=39.5
Q ss_pred CCch-hchhhhhhhhcCCcEEEEEEeCCChhhHH--HHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCC
Q psy15036 92 PLVS-RFLSLTTGLYRGTMGFLLIFDVTNENSFK--DVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQR 160 (179)
Q Consensus 92 ~G~e-~~~~~~~~~~~~~~~vilvyDit~~~Sf~--~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~ 160 (179)
+|+. +........+..+|+++.|+|..++.+.. .+.+|+ .. .|+++|.||+||.+
T Consensus 7 PGhm~ka~~~~~~~l~~aDvVl~VvDAr~p~~~~~~~l~~~l-------~~-------kp~ilVlNK~DL~~ 64 (282)
T 1puj_A 7 PGHMAKARREVTEKLKLIDIVYELVDARIPMSSRNPMIEDIL-------KN-------KPRIMLLNKADKAD 64 (282)
T ss_dssp --CTTHHHHHHHHHGGGCSEEEEEEETTSTTTTSCHHHHHHC-------SS-------SCEEEEEECGGGSC
T ss_pred chHHHHHHHHHHHHHhhCCEEEEEEeCCCCCccCCHHHHHHH-------CC-------CCEEEEEECcccCC
Confidence 5543 44445566789999999999999998875 455553 33 36788899999965
No 208
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=96.08 E-value=0.016 Score=47.81 Aligned_cols=125 Identities=10% Similarity=-0.012 Sum_probs=70.0
Q ss_pred eeEEE-EeCCCCc---eeEeeeccC--CCccc-CcceeeeeEEEEEecCCCee--eeCCCchhch----hhh---hhhhc
Q psy15036 43 NFGTQ-LGRRGIP---LLKHLKYLG--TGTHG-KTVGIVFPAISVTYSIGPRY--FRFPLVSRFL----SLT---TGLYR 106 (179)
Q Consensus 43 ~~Kiv-lG~~gvG---~~~~~~~~~--~~~~~-~Ti~~~~~~k~v~~~~~~~i--wDt~G~e~~~----~~~---~~~~~ 106 (179)
..+|. +|-++|| +++.+++.. ...|. .|+.. ....+.+. +.++ .||+|--+-. .+. -...+
T Consensus 72 ~a~V~ivG~PNvGKSTL~n~Lt~~~~~v~~~pftT~~~--~~g~~~~~-~~~i~l~D~pGl~~~a~~~~~~g~~~l~~i~ 148 (376)
T 4a9a_A 72 VASVGFVGFPSVGKSTLLSKLTGTESEAAEYEFTTLVT--VPGVIRYK-GAKIQMLDLPGIIDGAKDGRGRGKQVIAVAR 148 (376)
T ss_dssp SEEEEEECCCCHHHHHHHHHHHSBCCCGGGTCSSCCCE--EEEEEEET-TEEEEEEECGGGCCC-----CHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeee--eeEEEEeC-CcEEEEEeCCCccCCchhhhHHHHHHHHHHH
Confidence 35785 9999999 666665332 12232 23332 23456777 8787 8999863221 111 23467
Q ss_pred CCcEEEEEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCC--------CCCCCHHHHHHHHhhh
Q psy15036 107 GTMGFLLIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQR--------CREVVTPDQIMFGSTQ 176 (179)
Q Consensus 107 ~~~~vilvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~--------~r~Vs~~e~~~~a~~~ 176 (179)
.+|++++|.|.+++.. .......++...... .. + .|.+++.||.|..+ ....+.++.+.+...+
T Consensus 149 ~ad~il~vvD~~~p~~--~~~~i~~EL~~~~~~-l~--~-k~~~i~~nK~d~~gi~i~~~~~~~~l~~eeik~il~~~ 220 (376)
T 4a9a_A 149 TCNLLFIILDVNKPLH--HKQIIEKELEGVGIR-LN--K-TPPDILIKKKEKGGISITNTVPLTHLGNDEIRAVMSEY 220 (376)
T ss_dssp HCSEEEEEEETTSHHH--HHHHHHHHHHHTTEE-ET--C-CCCCEEEEECSSSCEEEEESSCCSSCCHHHHHHHHHHT
T ss_pred hcCccccccccCccHH--HHHHHHHHHHHhhHh-hc--c-CChhhhhhHhhhhhhhhhcchhhhhccHHHHHHHHHHh
Confidence 8999999999997632 222333333322111 00 1 24456689999643 2345666666655443
No 209
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=96.04 E-value=0.015 Score=52.17 Aligned_cols=65 Identities=11% Similarity=-0.025 Sum_probs=40.4
Q ss_pred eeCCCchh-------------chhhhhhhh-cCCcEEEEEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEee
Q psy15036 89 FRFPLVSR-------------FLSLTTGLY-RGTMGFLLIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGC 154 (179)
Q Consensus 89 wDt~G~e~-------------~~~~~~~~~-~~~~~vilvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGn 154 (179)
+||+|-.+ ...+...|. ..+|++++|.|.++.-+-.....++..+ .... .|+++|.|
T Consensus 155 VDTPGi~~~~~~~qp~di~~~i~~lv~~yi~~~aDlIL~VVDAs~~~~~~d~l~ll~~L---~~~g------~pvIlVlN 225 (772)
T 3zvr_A 155 VDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKIAKEV---DPQG------QRTIGVIT 225 (772)
T ss_dssp EECCCCCCCCSSCCCCHHHHHHHHHHHHHHTSTTEEEEEEEETTSCSSSCHHHHHHHHH---CTTC------SSEEEEEE
T ss_pred EECCCcccCCCCCCcHHHHHHHHHHHHHHHhcCCcEEEEEEcCCCCcchhHHHHHHHHH---HhcC------CCEEEEEe
Confidence 89999432 334555565 4789999999988643322222233333 2333 47888999
Q ss_pred CCCcCCCC
Q psy15036 155 LELLQRCR 162 (179)
Q Consensus 155 K~Dl~~~r 162 (179)
|+|+.++.
T Consensus 226 KiDlv~~~ 233 (772)
T 3zvr_A 226 KLDLMDEG 233 (772)
T ss_dssp CTTSSCTT
T ss_pred CcccCCcc
Confidence 99996543
No 210
>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}
Probab=96.04 E-value=0.014 Score=51.85 Aligned_cols=62 Identities=13% Similarity=-0.074 Sum_probs=44.9
Q ss_pred eeCCCchhchhhhhhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCC
Q psy15036 89 FRFPLVSRFLSLTTGLYRGTMGFLLIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQR 160 (179)
Q Consensus 89 wDt~G~e~~~~~~~~~~~~~~~vilvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~ 160 (179)
.||+|+..|..-...-++-+|++|+|.|...==.-+-..-|... .+. + .|++++-||.|...
T Consensus 90 IDTPGHvDF~~Ev~~aLr~~DgavlvVDaveGV~~qT~~v~~~a-~~~---~------lp~i~~iNKiDr~~ 151 (709)
T 4fn5_A 90 IDTPGHVDFTIEVERSLRVLDGAVVVFCGTSGVEPQSETVWRQA-NKY---G------VPRIVYVNKMDRQG 151 (709)
T ss_dssp ECCCSCTTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHH-HHH---T------CCEEEEEECSSSTT
T ss_pred EeCCCCcccHHHHHHHHHHhCeEEEEEECCCCCchhHHHHHHHH-HHc---C------CCeEEEEccccccC
Confidence 89999999998888889999999999998764222222334333 322 2 46677789999754
No 211
>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}
Probab=95.41 E-value=0.011 Score=51.99 Aligned_cols=70 Identities=9% Similarity=-0.016 Sum_probs=48.3
Q ss_pred EEecCCCee--eeCCCchhchhhhhhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCC
Q psy15036 80 VTYSIGPRY--FRFPLVSRFLSLTTGLYRGTMGFLLIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLEL 157 (179)
Q Consensus 80 v~~~~~~~i--wDt~G~e~~~~~~~~~~~~~~~vilvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~D 157 (179)
+..+ +..+ .||+|+..|..-...-++-+|++|+|+|...=-.-+-...| ..+.++. .|+|++-||.|
T Consensus 62 ~~~~-~~~iNlIDTPGH~DF~~Ev~raL~~~DgavlVVDa~~GV~~qT~~v~-~~a~~~~---------lp~i~~INKmD 130 (638)
T 3j25_A 62 FQWE-NTKVNIIDTPGHMDFLAEVYRSLSVLDGAILLISAKDGVQAQTRILF-HALRKMG---------IPTIFFINKID 130 (638)
T ss_dssp CBCS-SCBCCCEECCCSSSTHHHHHHHHTTCSEEECCEESSCTTCSHHHHHH-HHHHHHT---------CSCEECCEECC
T ss_pred EEEC-CEEEEEEECCCcHHHHHHHHHHHHHhCEEEEEEeCCCCCcHHHHHHH-HHHHHcC---------CCeEEEEeccc
Confidence 3445 6666 99999999998888889999999999998753222222334 3333332 34567789999
Q ss_pred cCC
Q psy15036 158 LQR 160 (179)
Q Consensus 158 l~~ 160 (179)
...
T Consensus 131 r~~ 133 (638)
T 3j25_A 131 QNG 133 (638)
T ss_dssp SSS
T ss_pred ccc
Confidence 754
No 212
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=95.08 E-value=0.0047 Score=50.32 Aligned_cols=55 Identities=7% Similarity=-0.075 Sum_probs=36.8
Q ss_pred eeCCCchhchhhhhhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCC
Q psy15036 89 FRFPLVSRFLSLTTGLYRGTMGFLLIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQR 160 (179)
Q Consensus 89 wDt~G~e~~~~~~~~~~~~~~~vilvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~ 160 (179)
|||+|... ......+.+|++++|+|.+..+.+..+..++ .. .|+++|.||+|+..
T Consensus 177 iDTpGi~~---~~~~~~~~aD~vl~V~d~~~~~~~~~l~~~~--------~~------~p~ivVlNK~Dl~~ 231 (355)
T 3p32_A 177 IETVGVGQ---SEVAVANMVDTFVLLTLARTGDQLQGIKKGV--------LE------LADIVVVNKADGEH 231 (355)
T ss_dssp EEECSCSS---HHHHHHTTCSEEEEEEESSTTCTTTTCCTTS--------GG------GCSEEEEECCCGGG
T ss_pred EeCCCCCc---HHHHHHHhCCEEEEEECCCCCccHHHHHHhH--------hh------cCCEEEEECCCCcC
Confidence 99999432 2334568999999999987766554332110 11 36678899999864
No 213
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=94.98 E-value=0.0084 Score=48.55 Aligned_cols=55 Identities=9% Similarity=-0.061 Sum_probs=33.0
Q ss_pred eeCCCchhchhhhhhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCC
Q psy15036 89 FRFPLVSRFLSLTTGLYRGTMGFLLIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQR 160 (179)
Q Consensus 89 wDt~G~e~~~~~~~~~~~~~~~vilvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~ 160 (179)
|||+|...+.. ...+.+|++++|+|.+..+.++.+... . . . .|.++|.||+|+.+
T Consensus 154 iDTpG~~~~~~---~~~~~aD~vl~Vvd~~~~~~~~~l~~~---~--~---~------~p~ivv~NK~Dl~~ 208 (341)
T 2p67_A 154 VETVGVGQSET---EVARMVDCFISLQIAGGGDDLQGIKKG---L--M---E------VADLIVINKDDGDN 208 (341)
T ss_dssp EEEECCTTHHH---HHHTTCSEEEEEECC------CCCCHH---H--H---H------HCSEEEECCCCTTC
T ss_pred EeCCCccchHH---HHHHhCCEEEEEEeCCccHHHHHHHHh---h--h---c------ccCEEEEECCCCCC
Confidence 99999654432 356899999999999765443221110 0 0 1 35678899999965
No 214
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=93.76 E-value=0.062 Score=44.50 Aligned_cols=76 Identities=9% Similarity=0.050 Sum_probs=44.1
Q ss_pred eeEEE-EeCCCCc---eeEeeeccC--CCcccCcceeeeeEEEEEecCC-----------------Cee--eeCCCchh-
Q psy15036 43 NFGTQ-LGRRGIP---LLKHLKYLG--TGTHGKTVGIVFPAISVTYSIG-----------------PRY--FRFPLVSR- 96 (179)
Q Consensus 43 ~~Kiv-lG~~gvG---~~~~~~~~~--~~~~~~Ti~~~~~~k~v~~~~~-----------------~~i--wDt~G~e~- 96 (179)
..++. +|.+|+| +++.+.+.. .....|....+.....+.+. + ..+ ||++|...
T Consensus 20 g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~-~~r~~~l~~~~~~~~~v~~~i~lvD~pGl~~~ 98 (392)
T 1ni3_A 20 NLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVP-DERFDWLCEAYKPKSRVPAFLTVFDIAGLTKG 98 (392)
T ss_dssp CCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEEC-CHHHHHHHHHHCCSEEECEEEEEECTGGGCCC
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeC-CcchhhhhhhcccccccCcceEEEeccccccC
Confidence 46785 9999999 666666421 11122211112222344444 4 123 99999543
Q ss_pred ------chhhhhhhhcCCcEEEEEEeCCC
Q psy15036 97 ------FLSLTTGLYRGTMGFLLIFDVTN 119 (179)
Q Consensus 97 ------~~~~~~~~~~~~~~vilvyDit~ 119 (179)
+......+++.+|+++.|+|..+
T Consensus 99 ~s~~e~L~~~fl~~ir~~d~il~Vvd~~~ 127 (392)
T 1ni3_A 99 ASTGVGLGNAFLSHVRAVDAIYQVVRAFD 127 (392)
T ss_dssp CCSSSSSCHHHHHHHTTCSEEEEEEECCC
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 22234456789999999999874
No 215
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=93.62 E-value=0.076 Score=43.08 Aligned_cols=55 Identities=7% Similarity=-0.037 Sum_probs=30.7
Q ss_pred eeCCCchhchhhhhhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCC
Q psy15036 89 FRFPLVSRFLSLTTGLYRGTMGFLLIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQR 160 (179)
Q Consensus 89 wDt~G~e~~~~~~~~~~~~~~~vilvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~ 160 (179)
+||+|... ........+|.+++|+|.++.+..+.+.. .+ -. .|.++|.||+|+.+
T Consensus 172 iDT~Gi~~---~~~~l~~~~d~vl~V~d~~~~~~~~~i~~---~i----l~-------~~~ivVlNK~Dl~~ 226 (349)
T 2www_A 172 IETVGVGQ---SEFAVADMVDMFVLLLPPAGGDELQGIKR---GI----IE-------MADLVAVTKSDGDL 226 (349)
T ss_dssp EECCCC-----CHHHHHTTCSEEEEEECCC-------------------CC-------SCSEEEECCCSGGG
T ss_pred EECCCcch---hhhhHHhhCCEEEEEEcCCcchhHHHhHH---HH----Hh-------cCCEEEEeeecCCC
Confidence 99999531 12345779999999999987644332221 11 11 24567789999853
No 216
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=92.29 E-value=0.21 Score=39.96 Aligned_cols=55 Identities=9% Similarity=-0.014 Sum_probs=36.6
Q ss_pred hhhhhhhhcCCcEEEEEEeCCChhh-HHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCCC
Q psy15036 98 LSLTTGLYRGTMGFLLIFDVTNENS-FKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQRC 161 (179)
Q Consensus 98 ~~~~~~~~~~~~~vilvyDit~~~S-f~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~~ 161 (179)
..+.+....++|.+++|+|..++.+ ...+.+++..+.. .. .+++||-||+||.+.
T Consensus 77 ~~l~R~~~anvD~v~~V~~~~~p~~~~~~i~r~L~~~~~--~~-------~~~vivlnK~DL~~~ 132 (307)
T 1t9h_A 77 NELIRPPICNVDQAVLVFSAVQPSFSTALLDRFLVLVEA--ND-------IQPIICITKMDLIED 132 (307)
T ss_dssp CEETTTTEECCCEEEEEEESTTTTCCHHHHHHHHHHHHT--TT-------CEEEEEEECGGGCCC
T ss_pred hhhhHHHHHhCCEEEEEEeCCCCCCCHHHHHHHHHHHHH--CC-------CCEEEEEECCccCch
Confidence 3445556889999999999987654 4444555443332 12 355677899999753
No 217
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=91.79 E-value=0.036 Score=43.23 Aligned_cols=52 Identities=13% Similarity=0.068 Sum_probs=27.3
Q ss_pred eEEE-EeCCCCc---eeEeeeccCCCcccCcceeeeeEEEEEecCCCe-eeeCCCchh
Q psy15036 44 FGTQ-LGRRGIP---LLKHLKYLGTGTHGKTVGIVFPAISVTYSIGPR-YFRFPLVSR 96 (179)
Q Consensus 44 ~Kiv-lG~~gvG---~~~~~~~~~~~~~~~Ti~~~~~~k~v~~~~~~~-iwDt~G~e~ 96 (179)
++++ +|.+||| +++.+.+.......++.|.+.....+.++ ... +|||+|...
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~~~~~~~~~~g~T~~~~~~~~~-~~~~l~DtpG~~~ 156 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGKRASSVGAQPGITKGIQWFSLE-NGVKILDTPGILY 156 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTCC----------CCSCEEECT-TSCEEESSCEECC
T ss_pred hheEEeCCCCCCHHHHHHHHhcccccccCCCCCCccceEEEEeC-CCEEEEECCCccc
Confidence 6887 9999999 55555544333344555554443445555 333 399999753
No 218
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=91.67 E-value=0.056 Score=42.14 Aligned_cols=45 Identities=9% Similarity=-0.052 Sum_probs=34.1
Q ss_pred hhhhhhcCCcEEEEEEeCCChhhHHH--HHHHHHHHHHHhCCccCccccceEEEEeeCCCcCC
Q psy15036 100 LTTGLYRGTMGFLLIFDVTNENSFKD--VEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQR 160 (179)
Q Consensus 100 ~~~~~~~~~~~vilvyDit~~~Sf~~--l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~ 160 (179)
.......++|+++.|+|..++.+..+ +. |+ . .|.++|.||+||.+
T Consensus 14 ~~~~~l~~~D~vl~VvDar~P~~~~~~~l~-ll--------~-------k~~iivlNK~DL~~ 60 (262)
T 3cnl_A 14 QIKDLLRLVNTVVEVRDARAPFATSAYGVD-FS--------R-------KETIILLNKVDIAD 60 (262)
T ss_dssp HHHHHHTTCSEEEEEEETTSTTTTSCTTSC-CT--------T-------SEEEEEEECGGGSC
T ss_pred HHHHHHhhCCEEEEEeeCCCCCcCcChHHH-hc--------C-------CCcEEEEECccCCC
Confidence 34557889999999999999877754 22 32 2 47788899999965
No 219
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=87.05 E-value=0.059 Score=44.09 Aligned_cols=106 Identities=9% Similarity=0.042 Sum_probs=51.9
Q ss_pred eEEE-EeCCCCc---eeEeeecc-----CCCcccCcceeeeeEEEEEecCCCee-eeCCCchhchh--------hhhhhh
Q psy15036 44 FGTQ-LGRRGIP---LLKHLKYL-----GTGTHGKTVGIVFPAISVTYSIGPRY-FRFPLVSRFLS--------LTTGLY 105 (179)
Q Consensus 44 ~Kiv-lG~~gvG---~~~~~~~~-----~~~~~~~Ti~~~~~~k~v~~~~~~~i-wDt~G~e~~~~--------~~~~~~ 105 (179)
.+++ +|..||| +++.+.+. ......+.-|.+.....+.++ .... .||+|-..... ....++
T Consensus 163 ~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~gtT~~~~~~~~~-~~~~liDtPG~~~~~~~~~~l~~~~l~~~~ 241 (369)
T 3ec1_A 163 GDVYVVGCTNVGKSTFINRIIEEATGKGNVITTSYFPGTTLDMIEIPLE-SGATLYDTPGIINHHQMAHFVDARDLKIIT 241 (369)
T ss_dssp SCEEEECCTTSSHHHHHHHHHHHHHHTTCCCEEEECTTSSCEEEEEECS-TTCEEEECCSCCCCSSGGGGSCTTTHHHHS
T ss_pred CcEEEEcCCCCchHHHHHHHHhhccCCccceeecCCCCeEEeeEEEEeC-CCeEEEeCCCcCcHHHHHHHHhHHHHHHHh
Confidence 3576 9999999 44444422 011011111111222344555 3333 99999543221 112222
Q ss_pred --cCCcEEEEEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCC
Q psy15036 106 --RGTMGFLLIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQR 160 (179)
Q Consensus 106 --~~~~~vilvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~ 160 (179)
+..+.++++.+....--+..+.. +....... .|++++.||.|..+
T Consensus 242 ~~~~i~~~~~~l~~~~~~~~g~l~~----l~~l~~~~------~~~~~v~~k~d~~~ 288 (369)
T 3ec1_A 242 PKREIHPRVYQLNEGQTLFFGGLAR----LDYIKGGR------RSFVCYMANELTVH 288 (369)
T ss_dssp CSSCCCCEEEEECTTEEEEETTTEE----EEEEESSS------EEEEEEECTTSCEE
T ss_pred cccccCceEEEEcCCceEEECCEEE----EEEccCCC------ceEEEEecCCcccc
Confidence 56788888887632211111111 11112222 57889999999865
No 220
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=86.56 E-value=1.4 Score=35.95 Aligned_cols=48 Identities=8% Similarity=0.064 Sum_probs=31.4
Q ss_pred hhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCC
Q psy15036 104 LYRGTMGFLLIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQR 160 (179)
Q Consensus 104 ~~~~~~~vilvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~ 160 (179)
...++|.+++|....-.-+...+.+++-...... .+++||-||+||.+
T Consensus 127 i~anvD~v~iv~a~~P~~~~~~i~r~L~~a~~~~---------~~~iivlNK~DL~~ 174 (358)
T 2rcn_A 127 IAANIDQIVIVSAILPELSLNIIDRYLVGCETLQ---------VEPLIVLNKIDLLD 174 (358)
T ss_dssp EEECCCEEEEEEESTTTCCHHHHHHHHHHHHHHT---------CEEEEEEECGGGCC
T ss_pred HHhcCCEEEEEEeCCCCCCHHHHHHHHHHHHhcC---------CCEEEEEECccCCC
Confidence 3578999999987653334555566655544332 24477889999965
No 221
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=85.13 E-value=0.35 Score=37.94 Aligned_cols=53 Identities=15% Similarity=0.126 Sum_probs=26.0
Q ss_pred eeeEEE-EeCCCCc---eeEeeeccCCCcccCcceeeeeEEEEEecCCCee-eeCCCch
Q psy15036 42 FNFGTQ-LGRRGIP---LLKHLKYLGTGTHGKTVGIVFPAISVTYSIGPRY-FRFPLVS 95 (179)
Q Consensus 42 ~~~Kiv-lG~~gvG---~~~~~~~~~~~~~~~Ti~~~~~~k~v~~~~~~~i-wDt~G~e 95 (179)
..++++ +|.++|| +++.+.+.......++.|.+.....+.++ .... |||+|--
T Consensus 119 ~~~~v~~vG~~nvGKSsliN~l~~~~~~~~~~~~g~T~~~~~~~~~-~~~~l~DtpG~~ 176 (282)
T 1puj_A 119 RAIRALIIGIPNVGKSTLINRLAKKNIAKTGDRPGITTSQQWVKVG-KELELLDTPGIL 176 (282)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHTSCCC------------CCEEET-TTEEEEECCCCC
T ss_pred CCceEEEEecCCCchHHHHHHHhcCceeecCCCCCeeeeeEEEEeC-CCEEEEECcCcC
Confidence 357887 9999999 55555543222222222322222234445 4433 9999964
No 222
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=84.38 E-value=0.54 Score=37.81 Aligned_cols=34 Identities=18% Similarity=-0.002 Sum_probs=22.5
Q ss_pred CCee--eeCCCchhchhhhhhhhcCCcEEEEEEeCCChh
Q psy15036 85 GPRY--FRFPLVSRFLSLTTGLYRGTMGFLLIFDVTNEN 121 (179)
Q Consensus 85 ~~~i--wDt~G~e~~~~~~~~~~~~~~~vilvyDit~~~ 121 (179)
+..+ +||+|...- .......+|.+++++|....+
T Consensus 147 ~~~~iliDT~Gi~~~---~~~v~~~~d~vl~v~d~~~~~ 182 (337)
T 2qm8_A 147 GFDVILVETVGVGQS---ETAVADLTDFFLVLMLPGAGD 182 (337)
T ss_dssp TCCEEEEEECSSSSC---HHHHHTTSSEEEEEECSCC--
T ss_pred CCCEEEEECCCCCcc---hhhHHhhCCEEEEEEcCCCcc
Confidence 4444 999996432 123457899999999986544
No 223
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=83.87 E-value=0.13 Score=42.13 Aligned_cols=106 Identities=8% Similarity=0.065 Sum_probs=50.5
Q ss_pred eEEE-EeCCCCc---eeEeeeccC------CCcccCcceeeeeEEEEEecCCCe-eeeCCCchhchh----hh----hhh
Q psy15036 44 FGTQ-LGRRGIP---LLKHLKYLG------TGTHGKTVGIVFPAISVTYSIGPR-YFRFPLVSRFLS----LT----TGL 104 (179)
Q Consensus 44 ~Kiv-lG~~gvG---~~~~~~~~~------~~~~~~Ti~~~~~~k~v~~~~~~~-iwDt~G~e~~~~----~~----~~~ 104 (179)
.+++ +|..||| +++.+.+.. .....+.-|.+.....+.++ +.. +.||+|-..... +. ..+
T Consensus 161 ~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~~gtT~~~~~~~~~-~~~~liDtPG~~~~~~~~~~l~~~~l~~~ 239 (368)
T 3h2y_A 161 KDVYVVGCTNVGKSTFINRMIKEFSDETENVITTSHFPGTTLDLIDIPLD-EESSLYDTPGIINHHQMAHYVGKQSLKLI 239 (368)
T ss_dssp SCEEEEEBTTSSHHHHHHHHHHHHTTSCSSCCEEECCC----CEEEEESS-SSCEEEECCCBCCTTSGGGGSCHHHHHHH
T ss_pred ceEEEecCCCCChhHHHHHHHhhhccccccceecCCCCCeecceEEEEec-CCeEEEeCCCcCcHHHHHHHhhHHHHHHh
Confidence 4676 9999999 554444321 11111222222223445555 333 399999643221 11 111
Q ss_pred --hcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCC
Q psy15036 105 --YRGTMGFLLIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQR 160 (179)
Q Consensus 105 --~~~~~~vilvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~ 160 (179)
.+..+.++++.+.....-+..+.. +....... .|++++.||.|..+
T Consensus 240 ~~~~~i~~~~~~l~~~~~~~~g~l~~----~d~l~~~~------~~~~~v~nk~d~~~ 287 (368)
T 3h2y_A 240 TPTKEIKPMVFQLNEEQTLFFSGLAR----FDYVSGGR------RAFTCHFSNRLTIH 287 (368)
T ss_dssp SCSSCCCCEEEEECTTEEEEETTTEE----EEEEESSS------EEEEEEECTTSCEE
T ss_pred ccccccCceEEEEcCCCEEEEcceEE----EEEecCCC------ceEEEEecCccccc
Confidence 245677777776522211111110 11111222 57889999999865
No 224
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=78.93 E-value=7 Score=32.53 Aligned_cols=13 Identities=0% Similarity=-0.463 Sum_probs=11.0
Q ss_pred ceEEEEeeCCCcC
Q psy15036 147 QIVFMRGCLELLQ 159 (179)
Q Consensus 147 ~~iilvGnK~Dl~ 159 (179)
.++|+|.||+|.-
T Consensus 177 ~~vI~Vi~KtD~L 189 (427)
T 2qag_B 177 VNIIPIIAKADAI 189 (427)
T ss_dssp SEEEEEESCGGGS
T ss_pred CCEEEEEcchhcc
Confidence 6889999999963
No 225
>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}
Probab=76.17 E-value=15 Score=26.88 Aligned_cols=72 Identities=6% Similarity=-0.048 Sum_probs=48.1
Q ss_pred eeCCCchhchhhhhhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCCCCCCCHHH
Q psy15036 89 FRFPLVSRFLSLTTGLYRGTMGFLLIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQRCREVVTPD 168 (179)
Q Consensus 89 wDt~G~e~~~~~~~~~~~~~~~vilvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~~r~Vs~~e 168 (179)
.|+++.- .......+..+|.+|++... +..+...+...++.+++..... ..+-+|-|+.+... ..+.++
T Consensus 124 iD~p~~~--~~~~~~~l~~ad~viiv~~~-~~~~~~~~~~~~~~l~~~~~~~------~~~~~v~N~~~~~~--~~~~~~ 192 (245)
T 3ea0_A 124 VDFGASI--DHVGVWVLEHLDELCIVTTP-SLQSLRRAGQLLKLCKEFEKPI------SRIEIILNRADTNS--RITSDE 192 (245)
T ss_dssp EEEESSC--CTTHHHHGGGCSEEEEEECS-SHHHHHHHHHHHHHHHTCSSCC------SCEEEEEESTTSCT--TSCHHH
T ss_pred EeCCCCC--chHHHHHHHHCCEEEEEecC-cHHHHHHHHHHHHHHHHhCCCc------cceEEEEecCCCCC--CCCHHH
Confidence 6776543 23445567889999999875 5788888888888887654322 35667789998643 344444
Q ss_pred HHH
Q psy15036 169 QIM 171 (179)
Q Consensus 169 ~~~ 171 (179)
.++
T Consensus 193 ~~~ 195 (245)
T 3ea0_A 193 IEK 195 (245)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 226
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=75.41 E-value=9.6 Score=27.16 Aligned_cols=63 Identities=2% Similarity=-0.243 Sum_probs=42.1
Q ss_pred eeCCCchhchhhhhhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcC
Q psy15036 89 FRFPLVSRFLSLTTGLYRGTMGFLLIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQ 159 (179)
Q Consensus 89 wDt~G~e~~~~~~~~~~~~~~~vilvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~ 159 (179)
.|+++.- .......+..+|.++++...+.. + ..+...++.+++....+ +..++.+|-|+.|..
T Consensus 81 iD~~~~~--~~~~~~~l~~ad~viiv~~~~~~-~-~~~~~~~~~l~~~~~~~----~~~~~~vv~N~~~~~ 143 (206)
T 4dzz_A 81 VDGAGSL--SVITSAAVMVSDLVIIPVTPSPL-D-FSAAGSVVTVLEAQAYS----RKVEARFLITRKIEM 143 (206)
T ss_dssp EECCSSS--SHHHHHHHHHCSEEEEEECSCTT-T-HHHHHHHHHHHTTSCGG----GCCEEEEEECSBCTT
T ss_pred EECCCCC--CHHHHHHHHHCCEEEEEecCCHH-H-HHHHHHHHHHHHHHHhC----CCCcEEEEEeccCCC
Confidence 7888765 33445567789999999986544 4 77777777777654211 113557788999853
No 227
>2kpo_A Rossmann 2X2 fold protein; de novo designed, rossmann fold, NESG, GFT structural G PSI-2, protein structure initiative; NMR {Artificial gene}
Probab=70.24 E-value=3.7 Score=26.05 Aligned_cols=50 Identities=6% Similarity=0.066 Sum_probs=29.6
Q ss_pred hHHHHHHHHHHHHHHhCCccCccccceEEEEeeC--------------CCcCCCCCCCHHHHHHHHhhhC
Q psy15036 122 SFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCL--------------ELLQRCREVVTPDQIMFGSTQS 177 (179)
Q Consensus 122 Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK--------------~Dl~~~r~Vs~~e~~~~a~~~~ 177 (179)
+-+.++++++++++...+- -..|||.|- +|......-+.+|++.|.++.|
T Consensus 34 tedelkkyleefrkesqni------kvlilvsndeeldkakelaqkmeidvrtrkvtspdeakrwikefs 97 (110)
T 2kpo_A 34 TEDELKKYLEEFRKESQNI------KVLILVSNDEELDKAKELAQKMEIDVRTRKVTSPDEAKRWIKEFS 97 (110)
T ss_dssp SHHHHHHHHHHHTSSTTSE------EEEEEESSHHHHHHHHHHHHHTTCCEEEEECSSHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhhccCe------EEEEEEcChHHHHHHHHHHHhhceeeeeeecCChHHHHHHHHHHh
Confidence 3456777888877655442 344666662 3333333456788888877653
No 228
>3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid, borellia burgdorferi, plasmid partition protein, iodide; 2.25A {Borrelia burgdorferi} PDB: 3k9h_A
Probab=60.05 E-value=37 Score=25.30 Aligned_cols=59 Identities=2% Similarity=-0.120 Sum_probs=40.6
Q ss_pred eeCCCchhchhhhhhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCC
Q psy15036 89 FRFPLVSRFLSLTTGLYRGTMGFLLIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLEL 157 (179)
Q Consensus 89 wDt~G~e~~~~~~~~~~~~~~~vilvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~D 157 (179)
.|+++.- .......+..+|.+|++... +..+...+...++.+.+.... .++.+|.|+.+
T Consensus 150 iD~pp~~--~~~~~~~l~~aD~vivv~~~-~~~s~~~~~~~~~~l~~~~~~-------~~~~vv~N~~~ 208 (267)
T 3k9g_A 150 IDTNPSL--DVTLKNALLCSDYVIIPMTA-EKWAVESLDLFNFFVRKLNLF-------LPIFLIITRFK 208 (267)
T ss_dssp EEECSSC--SHHHHHHHTTCSEEEEEEES-CTTHHHHHHHHHHHHHTTTCC-------CCEEEEEEEEC
T ss_pred EECcCCc--cHHHHHHHHHCCeEEEEeCC-ChHHHHHHHHHHHHHHHHhcc-------CCEEEEEeccc
Confidence 6777643 23445566779999999986 556778888887777766443 34557778883
No 229
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=56.32 E-value=28 Score=29.52 Aligned_cols=60 Identities=7% Similarity=-0.169 Sum_probs=33.5
Q ss_pred eeCCCchhch-hhhh---hh--hcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCC
Q psy15036 89 FRFPLVSRFL-SLTT---GL--YRGTMGFLLIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQR 160 (179)
Q Consensus 89 wDt~G~e~~~-~~~~---~~--~~~~~~vilvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~ 160 (179)
+||+|..... .+.. .. ...+|.+++|.|.+..... + .....+.+.. +..++|-||.|...
T Consensus 189 IDTpG~~~~~~~l~~el~~~~~~i~pd~vllVvDa~~g~~~--~-~~a~~~~~~~---------~i~gvVlNK~D~~~ 254 (504)
T 2j37_W 189 VDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVMDASIGQAC--E-AQAKAFKDKV---------DVASVIVTKLDGHA 254 (504)
T ss_dssp EEECCCCTTCHHHHHHHHHHHHHHCCSEEEEEEETTCCTTH--H-HHHHHHHHHH---------CCCCEEEECTTSCC
T ss_pred EeCCCCcccchhHHHHHHHHHhhhcCceEEEEEeccccccH--H-HHHHHHHhhc---------CceEEEEeCCcccc
Confidence 9999975321 1111 11 2378999999998775431 1 1122233221 22356679999864
No 230
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=52.49 E-value=63 Score=23.33 Aligned_cols=58 Identities=14% Similarity=-0.080 Sum_probs=40.0
Q ss_pred eeCCCchhchhhhhhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCC
Q psy15036 89 FRFPLVSRFLSLTTGLYRGTMGFLLIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLEL 157 (179)
Q Consensus 89 wDt~G~e~~~~~~~~~~~~~~~vilvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~D 157 (179)
.|+++.-. ......+..+|.+|++... +..++..+....+.+.+... ..+.+|.||.+
T Consensus 137 iD~pp~~~--~~~~~~l~~aD~viiv~~~-~~~s~~~~~~~~~~~~~~~~--------~~~~~v~N~~~ 194 (254)
T 3kjh_A 137 MDMGAGIE--HLTRGTAKAVDMMIAVIEP-NLNSIKTGLNIEKLAGDLGI--------KKVRYVINKVR 194 (254)
T ss_dssp EEECTTCT--TCCHHHHTTCSEEEEEECS-SHHHHHHHHHHHHHHHHHTC--------SCEEEEEEEEC
T ss_pred EeCCCccc--HHHHHHHHHCCEEEEecCC-CHHHHHHHHHHHHHHHHcCC--------ccEEEEEeCCC
Confidence 78776432 2455667899999999985 56778888777775555433 24566779887
No 231
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=47.52 E-value=76 Score=22.81 Aligned_cols=60 Identities=3% Similarity=-0.129 Sum_probs=41.7
Q ss_pred eeCCCc-hhchhhhhhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcC
Q psy15036 89 FRFPLV-SRFLSLTTGLYRGTMGFLLIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQ 159 (179)
Q Consensus 89 wDt~G~-e~~~~~~~~~~~~~~~vilvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~ 159 (179)
.|+++. .. ......+..+|.+|++... +..+...+...++.+++.. . .++.+|.|+.|-.
T Consensus 73 iD~p~~~~~--~~~~~~l~~aD~viiv~~~-~~~~~~~~~~~~~~l~~~~-~-------~~~~vv~N~~~~~ 133 (209)
T 3cwq_A 73 IDTQARPED--EDLEALADGCDLLVIPSTP-DALALDALMLTIETLQKLG-N-------NRFRILLTIIPPY 133 (209)
T ss_dssp EEEECCCSS--SHHHHHHHTSSEEEEEECS-SHHHHHHHHHHHHHHHHTC-S-------SSEEEEECSBCCT
T ss_pred EeCCCCcCc--HHHHHHHHHCCEEEEEecC-CchhHHHHHHHHHHHHhcc-C-------CCEEEEEEecCCc
Confidence 687765 32 2345567889999998875 5678888888887777643 2 2456778998754
No 232
>1hyq_A MIND, cell division inhibitor (MIND-1); MINC, FTSZ, bacterial cell division, cell cycle; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.10
Probab=40.71 E-value=1e+02 Score=22.66 Aligned_cols=60 Identities=10% Similarity=-0.034 Sum_probs=41.1
Q ss_pred eeCCCchhchhhhhhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcC
Q psy15036 89 FRFPLVSRFLSLTTGLYRGTMGFLLIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQ 159 (179)
Q Consensus 89 wDt~G~e~~~~~~~~~~~~~~~vilvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~ 159 (179)
.|+++.-. .........+|.+|+|... +..+...+...++.+.+.. . .++-+|.|+.+-.
T Consensus 116 iD~~~~~~--~~~~~~~~~ad~vi~v~~~-~~~~~~~~~~~~~~l~~~~-~-------~~~~vv~N~~~~~ 175 (263)
T 1hyq_A 116 LDAPAGLE--RSAVIAIAAAQELLLVVNP-EISSITDGLKTKIVAERLG-T-------KVLGVVVNRITTL 175 (263)
T ss_dssp EECCSSSS--HHHHHHHHHSSEEEEEECS-SHHHHHHHHHHHHHHHHHT-C-------EEEEEEEEEECTT
T ss_pred EeCCCCCC--hHHHHHHHHCCEEEEEeCC-ChhHHHHHHHHHHHHHhcC-C-------CeeEEEEccCCcc
Confidence 78876433 3445567789999998874 5667888888887777652 2 3555678998754
No 233
>3q9l_A Septum site-determining protein MIND; ATPase, bacterial cell division inhibitor, MINC, MINE, cell hydrolase; HET: ATP; 2.34A {Escherichia coli} PDB: 3r9i_A* 3r9j_A*
Probab=40.29 E-value=63 Score=23.65 Aligned_cols=68 Identities=7% Similarity=-0.198 Sum_probs=42.1
Q ss_pred eeCCCchhchhhhhhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcC
Q psy15036 89 FRFPLVSRFLSLTTGLYRGTMGFLLIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQ 159 (179)
Q Consensus 89 wDt~G~e~~~~~~~~~~~~~~~vilvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~ 159 (179)
.|+++.-. ......+..+|.+|++.+. +..+...+...++.+...........+...+.+|.|+.+-.
T Consensus 119 iD~p~~~~--~~~~~~l~~ad~vi~v~~~-~~~s~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~N~~~~~ 186 (260)
T 3q9l_A 119 CDSPAGIE--TGALMALYFADEAIITTNP-EVSSVRDSDRILGILASKSRRAENGEEPIKEHLLLTRYNPG 186 (260)
T ss_dssp EECCSSSS--HHHHHHHHTCSEEEEEECS-SHHHHHHHHHHHHHHTTSSHHHHTTCSCCEEEEEEEEECHH
T ss_pred EcCCCCCC--HHHHHHHHhCCEEEEEecC-ChhHHHHHHHHHHHHHHhccccccccCCcceEEEEecCCcc
Confidence 78876432 3555667789999999884 56788888877777754321000000003556778998753
No 234
>1g3q_A MIND ATPase, cell division inhibitor; alpha-beta-alpha layered, protein-ADP complex, cell cycle, hydrolase; HET: ADP; 2.00A {Pyrococcus furiosus} SCOP: c.37.1.10 PDB: 1g3r_A* 1ion_A*
Probab=39.68 E-value=1e+02 Score=22.10 Aligned_cols=61 Identities=11% Similarity=-0.091 Sum_probs=41.9
Q ss_pred eeCCCchhchhhhhhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCC
Q psy15036 89 FRFPLVSRFLSLTTGLYRGTMGFLLIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQR 160 (179)
Q Consensus 89 wDt~G~e~~~~~~~~~~~~~~~vilvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~ 160 (179)
.|+++.-. ......+..+|.+|++... +..+...+...++.+.+.. . .++-+|-|+.+-..
T Consensus 117 iD~~~~~~--~~~~~~~~~ad~vi~v~~~-~~~~~~~~~~~~~~l~~~~-~-------~~~~vv~N~~~~~~ 177 (237)
T 1g3q_A 117 IDCPAGLQ--LDAMSAMLSGEEALLVTNP-EISCLTDTMKVGIVLKKAG-L-------AILGFVLNRYGRSD 177 (237)
T ss_dssp EECCSSSS--HHHHHHHTTCSEEEEEECS-CHHHHHHHHHHHHHHHHTT-C-------EEEEEEEEEETSCT
T ss_pred EECCCCcC--HHHHHHHHHCCeEEEEecC-CcccHHHHHHHHHHHHhCC-C-------ceEEEEEecCCccc
Confidence 68876433 3445567889999999875 5677888888877777652 2 34556789987643
No 235
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=38.17 E-value=1.3e+02 Score=22.80 Aligned_cols=62 Identities=3% Similarity=-0.135 Sum_probs=39.9
Q ss_pred eeCCCchhchhhhhhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceE-EEEeeCCC
Q psy15036 89 FRFPLVSRFLSLTTGLYRGTMGFLLIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIV-FMRGCLEL 157 (179)
Q Consensus 89 wDt~G~e~~~~~~~~~~~~~~~vilvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~i-ilvGnK~D 157 (179)
.|+++.-... .....+..+|.+|+|.. .+..+...+...++.+++..... + .++ -+|-|+.+
T Consensus 162 iD~p~~~~~~-~~~~~l~~aD~viiv~~-~~~~s~~~~~~~~~~l~~~~~~~----~-~~~~gvV~N~~~ 224 (307)
T 3end_A 162 FDVLGDVVCG-GFAAPLQHADQAVVVTA-NDFDSIYAMNRIIAAVQAKSKNY----K-VRLAGCVANRSR 224 (307)
T ss_dssp EEECCSSCCG-GGGGGGGTCSEEEEEEC-SSHHHHHHHHHHHHHHHTTTTTC----C-CEEEEEEEESCS
T ss_pred EeCCCccchH-HHHHHHHHCCEEEEEec-CcHHHHHHHHHHHHHHHHhhhcC----C-CceEEEEEecCC
Confidence 6776543221 12345678999999886 46678888888888887653221 1 333 37789987
No 236
>1wcv_1 SOJ, segregation protein; ATPase, bacterial, chromosome segregation; 1.6A {Thermus thermophilus} PDB: 2bej_A* 2bek_A*
Probab=34.85 E-value=1.3e+02 Score=22.11 Aligned_cols=62 Identities=10% Similarity=-0.008 Sum_probs=37.9
Q ss_pred eeCCCchhchhhhhhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHh---CCccCccccceE-EEEeeCCCcC
Q psy15036 89 FRFPLVSRFLSLTTGLYRGTMGFLLIFDVTNENSFKDVEKWLLQIKVMD---GALFTHFELQIV-FMRGCLELLQ 159 (179)
Q Consensus 89 wDt~G~e~~~~~~~~~~~~~~~vilvyDit~~~Sf~~l~~w~~~i~~~~---~~~~~~~~~~~i-ilvGnK~Dl~ 159 (179)
.|+++.-.. .....+..+|.+|++...+ ..++..+...++.+.+.. ..+ .++ -+|-|+.|-.
T Consensus 117 iD~pp~~~~--~~~~~l~~aD~viiv~~~~-~~s~~~~~~~~~~l~~~~~~~~~~------~~~~gvv~N~~~~~ 182 (257)
T 1wcv_1 117 LDAPPSLSP--LTLNALAAAEGVVVPVQAE-YYALEGVAGLLATLEEVRAGLNPR------LRLLGILVTMYDGR 182 (257)
T ss_dssp EECCSSCCH--HHHHHHHHCSEEEEEEESS-THHHHHHHHHHHHHHHHHHHTCTT------CEEEEEEEESBCTT
T ss_pred EeCCCCCCH--HHHHHHHHCCeEEEEecCc-hHHHHHHHHHHHHHHHHHHHhCCC------ceEEEEEEEeECCC
Confidence 788875322 2344556799999999854 456666665555554432 222 344 3678998753
No 237
>2oze_A ORF delta'; para, walker type atpases, DNA segregation, PSM19035, plasmid, DNA binding protein; HET: AGS EPE; 1.83A {Streptococcus pyogenes}
Probab=33.30 E-value=1.5e+02 Score=22.19 Aligned_cols=62 Identities=6% Similarity=-0.038 Sum_probs=35.7
Q ss_pred eeCCCchhchhhhhhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHH---hCCccCccccce-EEEEeeCCCcC
Q psy15036 89 FRFPLVSRFLSLTTGLYRGTMGFLLIFDVTNENSFKDVEKWLLQIKVM---DGALFTHFELQI-VFMRGCLELLQ 159 (179)
Q Consensus 89 wDt~G~e~~~~~~~~~~~~~~~vilvyDit~~~Sf~~l~~w~~~i~~~---~~~~~~~~~~~~-iilvGnK~Dl~ 159 (179)
.|+++.-.. .....+..+|.+|++... +..+...+...++.+.+. .... .+ +-+|-|+.|..
T Consensus 160 iD~pp~~~~--~~~~~l~~aD~viiv~~~-~~~s~~~~~~~~~~l~~~~~~~~~~------~~~~gvv~n~~~~~ 225 (298)
T 2oze_A 160 IDTVPTPSV--YTNNAIVASDYVMIPLQA-EEESTNNIQNYISYLIDLQEQFNPG------LDMIGFVPYLVDTD 225 (298)
T ss_dssp EEECSSCSH--HHHHHHHHCSEEEEEECG-GGCCHHHHHHHHHHHHHHHHHHCTT------CEEEEEEEEESCTT
T ss_pred EECCCCccH--HHHHHHHHCCeEEEEecC-cHHHHHHHHHHHHHHHHHHHHhCCC------CeEEEEEEEEECCC
Confidence 688765432 223344569999999864 344566665555555432 2222 34 44678998854
No 238
>1zpw_X Hypothetical protein TT1823; hyphotetical protein, structural genom NPPSFA, national project on protein structural and function analyses; 1.64A {Thermus thermophilus} SCOP: d.58.58.1
Probab=30.24 E-value=60 Score=20.47 Aligned_cols=17 Identities=6% Similarity=0.317 Sum_probs=11.9
Q ss_pred EEEEEEeCCChhhHHHH
Q psy15036 110 GFLLIFDVTNENSFKDV 126 (179)
Q Consensus 110 ~vilvyDit~~~Sf~~l 126 (179)
-++++||+++......+
T Consensus 5 ~~lV~YDI~~~kr~~kv 21 (90)
T 1zpw_X 5 LYAVAYDIPDDTRRVKL 21 (90)
T ss_dssp EEEEEEECCCHHHHHHH
T ss_pred EEEEEEeCCChHHHHHH
Confidence 47899999986444443
No 239
>1uoz_A Putative cellulase; hydrolase, glycoside hydrolase, family 6; HET: GLC SSG; 1.10A {Mycobacterium tuberculosis} SCOP: c.6.1.1 PDB: 1up3_A* 1up0_A* 1up2_A*
Probab=28.04 E-value=88 Score=24.85 Aligned_cols=33 Identities=18% Similarity=0.422 Sum_probs=26.2
Q ss_pred CCcEEEEEEeCCChh----------hHHHHHHHHHHHHHHhCC
Q psy15036 107 GTMGFLLIFDVTNEN----------SFKDVEKWLLQIKVMDGA 139 (179)
Q Consensus 107 ~~~~vilvyDit~~~----------Sf~~l~~w~~~i~~~~~~ 139 (179)
+...++++|++-+|+ +.+.-+.|++.+.....+
T Consensus 89 g~~pvlVvY~lP~RDC~a~ssgG~~~~~~Yk~~Id~ia~~i~~ 131 (315)
T 1uoz_A 89 GAMPVLTLYGIPHRDCGSYASGGFATGTDYRGWIDAVASGLGS 131 (315)
T ss_dssp TCBCEEEECCCTTBGGGSTTCBCCSSHHHHHHHHHHHHHHHTT
T ss_pred CCCcEEEEeCCCCCCchhhccCCCCCHHHHHHHHHHHHHHhCC
Confidence 445678899999886 677778999999887765
No 240
>2ph1_A Nucleotide-binding protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Archaeoglobus fulgidus dsm 4304} PDB: 3kb1_A*
Probab=27.31 E-value=1.7e+02 Score=21.52 Aligned_cols=61 Identities=13% Similarity=0.049 Sum_probs=36.1
Q ss_pred eeCCCchhchhhhhhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCc
Q psy15036 89 FRFPLVSRFLSLTTGLYRGTMGFLLIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELL 158 (179)
Q Consensus 89 wDt~G~e~~~~~~~~~~~~~~~vilvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl 158 (179)
.|+++.-....+...-...+|.+|+|...+ ..+...+...++.+++.. . +.+-+|-|+.|.
T Consensus 134 ID~pp~~~~~~~~~~~~~~aD~viiv~~~~-~~s~~~~~~~~~~l~~~~-~-------~~~gvV~N~~~~ 194 (262)
T 2ph1_A 134 IDLPPGTGDAPLTVMQDAKPTGVVVVSTPQ-ELTAVIVEKAINMAEETN-T-------SVLGLVENMSYF 194 (262)
T ss_dssp EECCSSSSSHHHHHHHHHCCSEEEEEECSS-SCCHHHHHHHHHHHHTTT-C-------CEEEEEETTCCE
T ss_pred EECcCCCchHHHHHHhhccCCeEEEEecCc-cchHHHHHHHHHHHHhCC-C-------CEEEEEECCCcc
Confidence 788875432112222233689999988754 456677777777665431 1 233377899874
No 241
>3rl5_A Metallophosphoesterase mpped2; alpha-beta fold, metallophosphodiesterase, active site mutan nucleotide polymorphism, hydrolase; 1.26A {Rattus norvegicus} PDB: 3rl3_A* 3rl4_A*
Probab=25.91 E-value=31 Score=27.08 Aligned_cols=48 Identities=15% Similarity=-0.135 Sum_probs=32.3
Q ss_pred EEEEecCCCeeeeCCCchhchhhhhhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHH
Q psy15036 78 ISVTYSIGPRYFRFPLVSRFLSLTTGLYRGTMGFLLIFDVTNENSFKDVEKWLLQIKVM 136 (179)
Q Consensus 78 k~v~~~~~~~iwDt~G~e~~~~~~~~~~~~~~~vilvyDit~~~Sf~~l~~w~~~i~~~ 136 (179)
+.+.+. |+.+.... + -...+|++|++=|+++..+.+++...++.+.+.
T Consensus 61 ri~~iS------D~H~~~~~--l---~i~~~D~vi~aGDl~~~g~~~e~~~~~~~L~~l 108 (296)
T 3rl5_A 61 RFVCIS------DTRSRTDG--I---QMPYGDILLHTGDFTELGLPSEVKKFNDWLGNL 108 (296)
T ss_dssp EEEEEB------CCTTCCTT--C---CCCSCSEEEECSCCSSSCCHHHHHHHHHHHHTS
T ss_pred EEEEEe------eCCCCcch--h---ccCCCCEEEECCcccCCCCHHHHHHHHHHHHhC
Confidence 455556 77775421 1 246889999999999887766666666656554
No 242
>3exc_X Uncharacterized protein; ferredoxin fold, double split beta-alpha-beta fold, dimer, C aspartate, RNA'ASE, hydrolase; 2.25A {Sulfolobus solfataricus} SCOP: d.58.58.0
Probab=25.57 E-value=87 Score=19.85 Aligned_cols=14 Identities=29% Similarity=0.826 Sum_probs=10.4
Q ss_pred cEEEEEEeCCChhh
Q psy15036 109 MGFLLIFDVTNENS 122 (179)
Q Consensus 109 ~~vilvyDit~~~S 122 (179)
--++++||+.+...
T Consensus 4 M~vlV~YDI~~~kr 17 (91)
T 3exc_X 4 MKLLVVYDVSDDSK 17 (91)
T ss_dssp CEEEEEEECCSHHH
T ss_pred eEEEEEEeCCCchH
Confidence 35789999987643
No 243
>1uf3_A Hypothetical protein TT1561; metallo-dependent phosphatases, structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.10A {Thermus thermophilus} SCOP: d.159.1.6
Probab=25.11 E-value=82 Score=22.27 Aligned_cols=41 Identities=12% Similarity=0.165 Sum_probs=26.2
Q ss_pred CCcEEEEEEeCCChh-hHHHHHHHHHHHHHHhCCccCccccceEEEEeeC
Q psy15036 107 GTMGFLLIFDVTNEN-SFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCL 155 (179)
Q Consensus 107 ~~~~vilvyDit~~~-Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK 155 (179)
++|.+|++=|+.+.. ..+.+..+++.+.+. +. |.+++.||-
T Consensus 32 ~~D~vi~~GDl~~~~~~~~~~~~~~~~l~~~-~~-------pv~~v~GNH 73 (228)
T 1uf3_A 32 GADAIALIGNLMPKAAKSRDYAAFFRILSEA-HL-------PTAYVPGPQ 73 (228)
T ss_dssp TCSEEEEESCSSCTTCCHHHHHHHHHHHGGG-CS-------CEEEECCTT
T ss_pred CCCEEEECCCCCCCCCCHHHHHHHHHHHHhc-CC-------cEEEECCCC
Confidence 789999999998765 555555555555432 11 445566885
No 244
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=24.55 E-value=1.2e+02 Score=23.41 Aligned_cols=60 Identities=8% Similarity=-0.219 Sum_probs=32.9
Q ss_pred eeCCCchh--chh-hhh-----hhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCC
Q psy15036 89 FRFPLVSR--FLS-LTT-----GLYRGTMGFLLIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQR 160 (179)
Q Consensus 89 wDt~G~e~--~~~-~~~-----~~~~~~~~vilvyDit~~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~ 160 (179)
.||+|... ... +.. .....++.+++|.|.+..+ +.-...+.+.+ .- +...+|-||.|...
T Consensus 186 IDTpg~~~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~---~~~~~~~~~~~---~~------~i~gvVlnk~D~~~ 253 (297)
T 1j8m_F 186 VDTAGRHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASIGQ---KAYDLASKFNQ---AS------KIGTIIITKMDGTA 253 (297)
T ss_dssp EECCCSCCTTCHHHHHHHHHHHHHHHCCSEEEEEEEGGGGG---GHHHHHHHHHH---TC------TTEEEEEECGGGCT
T ss_pred EeCCCCcccccHHHHHHHHHHHHHHhcCCEEEEEeeCCchH---HHHHHHHHHHh---hC------CCCEEEEeCCCCCc
Confidence 89999766 211 111 1244789999999876422 22112222222 11 33556779999753
No 245
>2yvt_A Hypothetical protein AQ_1956; structural genomics, unknown function, NPPSFA, national PROJ protein structural and functional analyses; 1.60A {Aquifex aeolicus} SCOP: d.159.1.6
Probab=24.12 E-value=1e+02 Score=22.43 Aligned_cols=18 Identities=0% Similarity=0.141 Sum_probs=14.6
Q ss_pred cCCcEEEEEEeCCChhhH
Q psy15036 106 RGTMGFLLIFDVTNENSF 123 (179)
Q Consensus 106 ~~~~~vilvyDit~~~Sf 123 (179)
.++|.+|++=|+.+....
T Consensus 31 ~~~D~vi~~GDl~~~~~~ 48 (260)
T 2yvt_A 31 KQPDILVVVGNILKNEAL 48 (260)
T ss_dssp HCCSEEEEESCCCCCHHH
T ss_pred cCCCEEEECCCCCCccCc
Confidence 478999999999886543
No 246
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=24.12 E-value=2.2e+02 Score=21.49 Aligned_cols=13 Identities=31% Similarity=0.833 Sum_probs=11.1
Q ss_pred eeeEEE-EeCCCCc
Q psy15036 42 FNFGTQ-LGRRGIP 54 (179)
Q Consensus 42 ~~~Kiv-lG~~gvG 54 (179)
+.|++. +|.+|+|
T Consensus 1 f~f~v~lvG~nGaG 14 (270)
T 3sop_A 1 FDFNIMVVGQSGLG 14 (270)
T ss_dssp CEEEEEEEESSSSS
T ss_pred CeeEEEEECCCCCC
Confidence 467886 9999999
No 247
>3kgk_A Arsenical resistance operon trans-acting represso; alpha+beta, chaperone, DNA-binding, RE transcription, transcription regulation; 1.40A {Escherichia coli} PDB: 3mwh_A
Probab=23.60 E-value=1.3e+02 Score=20.03 Aligned_cols=62 Identities=11% Similarity=0.005 Sum_probs=41.5
Q ss_pred cCCcEEEEEEeCCC-hhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCCCCCCCHHHHHHHHh
Q psy15036 106 RGTMGFLLIFDVTN-ENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQRCREVVTPDQIMFGS 174 (179)
Q Consensus 106 ~~~~~vilvyDit~-~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~~r~Vs~~e~~~~a~ 174 (179)
++..+-|-.|++++ +.-|.+-..-.+.+.+..... .|+++|-.+.=+.+ |--+.+|..+|+.
T Consensus 37 k~~Gi~V~RyNL~~~P~aF~~N~~V~~~L~~~G~~~------LP~~~VDGevv~~G-~yPt~eEl~~~lg 99 (110)
T 3kgk_A 37 KQSGVQIERFNLAQQPMSFVQNEKVKAFIEASGAEG------LPLLLLDGETVMAG-RYPKRAELARWFG 99 (110)
T ss_dssp HHHTCCEEEEETTTCTTHHHHSHHHHHHHHHHCGGG------CCEEEETTEEEEES-SCCCHHHHHHHHT
T ss_pred HHCCCeEEEEccccChHHHhcCHHHHHHHHHcCccc------CCEEEECCEEEEec-cCCCHHHHHHHhC
Confidence 33355677888876 677887666666666655554 68888765554433 6788888888753
No 248
>2ivy_A Hypothetical protein SSO1404; structural genomics, unknown function, CAS, RNAI, crispr; 1.4A {Sulfolobus solfataricus} SCOP: d.58.58.1 PDB: 2i8e_A
Probab=23.23 E-value=80 Score=20.40 Aligned_cols=14 Identities=29% Similarity=0.650 Sum_probs=9.6
Q ss_pred EEEEEEeCCChhhH
Q psy15036 110 GFLLIFDVTNENSF 123 (179)
Q Consensus 110 ~vilvyDit~~~Sf 123 (179)
-++++||+++....
T Consensus 4 ~~lV~YDI~~~kr~ 17 (101)
T 2ivy_A 4 LYLIFYDITDDNLR 17 (101)
T ss_dssp EEEEEEEECCHHHH
T ss_pred EEEEEEeCCChHHH
Confidence 47788999866333
No 249
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=22.50 E-value=39 Score=29.30 Aligned_cols=19 Identities=16% Similarity=0.062 Sum_probs=13.6
Q ss_pred eeEEE-EeCCCCc---eeEeeec
Q psy15036 43 NFGTQ-LGRRGIP---LLKHLKY 61 (179)
Q Consensus 43 ~~Kiv-lG~~gvG---~~~~~~~ 61 (179)
..+|. +|.++|| ++..+.+
T Consensus 38 ~~~VaivG~pnvGKStLiN~L~g 60 (592)
T 1f5n_A 38 MVVVAIVGLYRTGKSYLMNKLAG 60 (592)
T ss_dssp EEEEEEEEBTTSSHHHHHHHHTT
T ss_pred CcEEEEECCCCCCHHHHHHhHcC
Confidence 46665 9999999 5555553
No 250
>3ro3_B Minsc, peptide of protein inscuteable homolog; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=20.80 E-value=74 Score=14.56 Aligned_cols=13 Identities=23% Similarity=0.815 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHH
Q psy15036 123 FKDVEKWLLQIKV 135 (179)
Q Consensus 123 f~~l~~w~~~i~~ 135 (179)
.+.+++|++.++-
T Consensus 7 vDSV~rWmeDLr~ 19 (22)
T 3ro3_B 7 VDSVQRWMEDLKL 19 (26)
T ss_pred hHHHHHHHHHHHh
Confidence 4567889988763
No 251
>3ktb_A Arsenical resistance operon trans-acting represso; alpha-beta-alpha sandwich, helix-turn-helix, structural GENO PSI-2; 2.10A {Bacteroides vulgatus}
Probab=20.25 E-value=1.1e+02 Score=20.12 Aligned_cols=62 Identities=2% Similarity=-0.120 Sum_probs=41.3
Q ss_pred hcCCcEEEEEEeCCC-hhhHHHHHHHHHHHHHHhCCccCccccceEEEEeeCCCcCCCCCCCHHHHHHHH
Q psy15036 105 YRGTMGFLLIFDVTN-ENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQRCREVVTPDQIMFG 173 (179)
Q Consensus 105 ~~~~~~vilvyDit~-~~Sf~~l~~w~~~i~~~~~~~~~~~~~~~iilvGnK~Dl~~~r~Vs~~e~~~~a 173 (179)
+++..+-|-.|++++ +..|.+-..-.+.+.+..... .|+++|-.|.=+.+ |--+.+|..+|+
T Consensus 39 lk~~Gi~V~RyNL~~~P~~F~~N~~V~~~L~~~G~~~------LP~~~VDGevv~~G-~yPt~eEl~~~l 101 (106)
T 3ktb_A 39 LKKQGIIVTRHNLRDEPQVYVSNKTVNDFLQKHGADA------LPITLVDGEIAVSQ-TYPTTKQMSEWT 101 (106)
T ss_dssp HHHTTCCCEEEETTTCTTHHHHSHHHHHHHHTTCGGG------CSEEEETTEEEECS-SCCCHHHHHHHH
T ss_pred HHHCCCEEEEEccccChHHHhcCHHHHHHHHHcCccc------CCEEEECCEEEEec-cCCCHHHHHHHh
Confidence 334456677888876 677887666666666555444 68888866654443 678888888775
Done!