RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy15036
(179 letters)
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein,
GDPNP, SLP2A, exophil GTP-binding, lipoprotein,
membrane, methylation; HET: GNP; 1.80A {Mus musculus}
PDB: 2iey_A* 2if0_A* 2zet_A*
Length = 195
Score = 62.6 bits (153), Expect = 8e-13
Identities = 22/39 (56%), Positives = 29/39 (74%)
Query: 96 RFLSLTTGLYRGTMGFLLIFDVTNENSFKDVEKWLLQIK 134
RF SLTT +R MGFLL+FD+TNE SF +V W+ Q++
Sbjct: 82 RFRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQ 120
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics,
structural genomics consortium, SGC, signaling protein;
HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB:
2iez_A*
Length = 217
Score = 62.7 bits (153), Expect = 9e-13
Identities = 20/39 (51%), Positives = 29/39 (74%)
Query: 96 RFLSLTTGLYRGTMGFLLIFDVTNENSFKDVEKWLLQIK 134
RF SLTT +R MGFLL+FD+T++ SF +V W+ Q++
Sbjct: 96 RFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQ 134
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics,
structural genomics consortium, SGC, protein transport;
HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Length = 189
Score = 60.3 bits (147), Expect = 5e-12
Identities = 20/39 (51%), Positives = 28/39 (71%)
Query: 96 RFLSLTTGLYRGTMGFLLIFDVTNENSFKDVEKWLLQIK 134
R+ ++TT YRG MGFLL++D+ N+ SF V+ W QIK
Sbjct: 83 RYRTITTAYYRGAMGFLLMYDIANQESFAAVQDWATQIK 121
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase
nucleotide free complex; 2.00A {Mus musculus} SCOP:
c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Length = 183
Score = 59.9 bits (146), Expect = 6e-12
Identities = 18/39 (46%), Positives = 28/39 (71%)
Query: 96 RFLSLTTGLYRGTMGFLLIFDVTNENSFKDVEKWLLQIK 134
RF ++TT YRG MG +L++D+TNE SF ++ W+ I+
Sbjct: 69 RFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIE 107
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB
protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus}
SCOP: c.37.1.8
Length = 203
Score = 60.4 bits (147), Expect = 6e-12
Identities = 21/39 (53%), Positives = 29/39 (74%)
Query: 96 RFLSLTTGLYRGTMGFLLIFDVTNENSFKDVEKWLLQIK 134
R+ ++TT YRG MGF+L++D+TNE SF V+ W QIK
Sbjct: 69 RYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIK 107
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis,
YPT/RAB protein, endocytosis, hydrolase,
endocytosis/exocytosis complex; HET: GDP; 1.35A
{Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Length = 182
Score = 59.9 bits (146), Expect = 7e-12
Identities = 15/39 (38%), Positives = 24/39 (61%)
Query: 96 RFLSLTTGLYRGTMGFLLIFDVTNENSFKDVEKWLLQIK 134
RF SL YRG +L++DVTN +SF++++ W +
Sbjct: 70 RFQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFL 108
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics
consortium, SGC, cell GTP-binding, lipoprotein,
membrane, methylation; HET: GDP; 1.90A {Homo sapiens}
Length = 191
Score = 59.9 bits (146), Expect = 7e-12
Identities = 21/39 (53%), Positives = 29/39 (74%)
Query: 96 RFLSLTTGLYRGTMGFLLIFDVTNENSFKDVEKWLLQIK 134
R+ ++TT YRG MGF+L++D+TNE SF V+ W QIK
Sbjct: 84 RYRTITTAYYRGAMGFILMYDITNEESFNAVQDWATQIK 122
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein,
endocytosis/exocytosis complex; HET: GDP; 1.80A
{Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A*
2ocy_C 2eqb_A
Length = 170
Score = 59.5 bits (145), Expect = 7e-12
Identities = 15/39 (38%), Positives = 28/39 (71%)
Query: 96 RFLSLTTGLYRGTMGFLLIFDVTNENSFKDVEKWLLQIK 134
RF ++TT YRG MG +L++D+T+E +F ++++W +
Sbjct: 64 RFRTITTAYYRGAMGIILVYDITDERTFTNIKQWFKTVN 102
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport;
HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB:
1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Length = 207
Score = 60.4 bits (147), Expect = 8e-12
Identities = 16/39 (41%), Positives = 22/39 (56%)
Query: 96 RFLSLTTGLYRGTMGFLLIFDVTNENSFKDVEKWLLQIK 134
RF SL YRG +L+FDVT N+FK ++ W +
Sbjct: 69 RFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFL 107
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural
genomics, structural genomics consortium, SGC, unknown
function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Length = 180
Score = 59.5 bits (145), Expect = 9e-12
Identities = 17/39 (43%), Positives = 25/39 (64%)
Query: 96 RFLSLTTGLYRGTMGFLLIFDVTNENSFKDVEKWLLQIK 134
RF S+T YR LL++DVTN+ SF +++ WL +I
Sbjct: 72 RFRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIH 110
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine
exchange factor; 2.10A {Homo sapiens}
Length = 181
Score = 59.1 bits (144), Expect = 1e-11
Identities = 17/39 (43%), Positives = 29/39 (74%)
Query: 96 RFLSLTTGLYRGTMGFLLIFDVTNENSFKDVEKWLLQIK 134
RF ++T+ YRGT G ++++DVT+ SF +V++WL +I
Sbjct: 70 RFRTITSTYYRGTHGVIVVYDVTSAESFVNVKRWLHEIN 108
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular
transport, cytoplasm, cytoplasmic vesicle, exocytosis,
GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae}
SCOP: c.37.1.8
Length = 213
Score = 59.7 bits (145), Expect = 1e-11
Identities = 16/39 (41%), Positives = 28/39 (71%)
Query: 96 RFLSLTTGLYRGTMGFLLIFDVTNENSFKDVEKWLLQIK 134
RF ++TT YRG MG +L++DVT+E +F ++++W +
Sbjct: 81 RFRTITTAYYRGAMGIILVYDVTDERTFTNIKQWFKTVN 119
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics,
structural genomics consortium, SGC, protein transport;
HET: GDP; 2.10A {Homo sapiens}
Length = 192
Score = 59.2 bits (144), Expect = 2e-11
Identities = 15/39 (38%), Positives = 25/39 (64%)
Query: 96 RFLSLTTGLYRGTMGFLLIFDVTNENSFKDVEKWLLQIK 134
RF S+T+ YR G +L++D+T + +F D+ KW+ I
Sbjct: 87 RFNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMID 125
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET:
G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Length = 178
Score = 58.7 bits (143), Expect = 2e-11
Identities = 14/56 (25%), Positives = 24/56 (42%), Gaps = 4/56 (7%)
Query: 96 RFLSLTTGLYRGTMGFLLIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFM 151
+ G G LL++D+TN SF+++E W +K + E Q +
Sbjct: 68 IGGKMLDKYIYGAQGVLLVYDITNYQSFENLEDWYTVVK----KVSEESETQPLVA 119
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase,
geranylgeranylation, vesicular transport, protein
transport; HET: GDP GER; 1.48A {Saccharomyces
cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A*
3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Length = 206
Score = 59.2 bits (144), Expect = 2e-11
Identities = 16/39 (41%), Positives = 28/39 (71%)
Query: 96 RFLSLTTGLYRGTMGFLLIFDVTNENSFKDVEKWLLQIK 134
RF ++T+ YRG+ G ++++DVT++ SF V+ WL +I
Sbjct: 69 RFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEID 107
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport;
HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB:
1s8f_A* 1yzl_A* 2ocb_A*
Length = 177
Score = 58.7 bits (143), Expect = 2e-11
Identities = 15/39 (38%), Positives = 21/39 (53%)
Query: 96 RFLSLTTGLYRGTMGFLLIFDVTNENSFKDVEKWLLQIK 134
RF SL T YRG+ LL F V + SF+++ W +
Sbjct: 68 RFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFI 106
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding,
guanine-nucleotide exchang GDI-displacement factor;
2.85A {Homo sapiens}
Length = 199
Score = 58.8 bits (143), Expect = 2e-11
Identities = 16/39 (41%), Positives = 29/39 (74%)
Query: 96 RFLSLTTGLYRGTMGFLLIFDVTNENSFKDVEKWLLQIK 134
RF ++T+ YRG G ++++DVT++ SF +V++WL +I
Sbjct: 94 RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEID 132
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural
genomics, SGC, structural genomics consortium, signaling
protein; HET: GDP; 2.15A {Homo sapiens}
Length = 199
Score = 58.4 bits (142), Expect = 3e-11
Identities = 15/39 (38%), Positives = 24/39 (61%)
Query: 96 RFLSLTTGLYRGTMGFLLIFDVTNENSFKDVEKWLLQIK 134
RF S+ +R G LL++DVT E SF ++ +W+ I+
Sbjct: 89 RFRSIAKSYFRKADGVLLLYDVTCEKSFLNIREWVDMIE 127
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; HET: GNP; 1.32A {Homo sapiens}
SCOP: c.37.1.8
Length = 195
Score = 58.0 bits (141), Expect = 3e-11
Identities = 15/39 (38%), Positives = 26/39 (66%)
Query: 96 RFLSLTTGLYRGTMGFLLIFDVTNENSFKDVEKWLLQIK 134
RF +LT YRG G +L++DVT ++F ++ WL +++
Sbjct: 76 RFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELE 114
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein
transport-protein binding compl; HET: GTP; 2.18A {Homo
sapiens}
Length = 196
Score = 58.0 bits (141), Expect = 4e-11
Identities = 16/39 (41%), Positives = 29/39 (74%)
Query: 96 RFLSLTTGLYRGTMGFLLIFDVTNENSFKDVEKWLLQIK 134
RF ++T+ YRG G ++++DVT++ SF +V++WL +I
Sbjct: 77 RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEID 115
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics,
structural genomics consortium, SGC, signaling protein;
HET: GDP; 2.05A {Homo sapiens}
Length = 201
Score = 57.7 bits (140), Expect = 5e-11
Identities = 13/39 (33%), Positives = 22/39 (56%)
Query: 96 RFLSLTTGLYRGTMGFLLIFDVTNENSFKDVEKWLLQIK 134
RF ++T YR G +L +D+T +SF V W+ ++
Sbjct: 90 RFRTITQSYYRSANGAILAYDITKRSSFLSVPHWIEDVR 128
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural
genomics, structural genomics consortium, SGC, protein
transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8
PDB: 1z0a_A*
Length = 191
Score = 57.6 bits (140), Expect = 6e-11
Identities = 14/39 (35%), Positives = 21/39 (53%)
Query: 96 RFLSLTTGLYRGTMGFLLIFDVTNENSFKDVEKWLLQIK 134
F S+T YRG G LL++D+T +F + WL +
Sbjct: 82 SFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDAR 120
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT
complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Length = 208
Score = 57.7 bits (140), Expect = 6e-11
Identities = 10/56 (17%), Positives = 23/56 (41%), Gaps = 4/56 (7%)
Query: 96 RFLSLTTGLYRGTMGFLLIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFM 151
+ + + G +L+FDV++ SF+ + W +K + E + +
Sbjct: 85 LYKEQISQYWNGVYYAILVFDVSSMESFESCKAWFELLK----SARPDRERPLRAV 136
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural
genomics, structural genomics consortium, SGC, signaling
protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Length = 201
Score = 57.7 bits (140), Expect = 6e-11
Identities = 15/39 (38%), Positives = 24/39 (61%)
Query: 96 RFLSLTTGLYRGTMGFLLIFDVTNENSFKDVEKWLLQIK 134
RF S+T YR +L +D+T E SF+ + +WL +I+
Sbjct: 87 RFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIE 125
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking,
protein transport; HET: GDP; 1.90A {Mus musculus} SCOP:
c.37.1.8 PDB: 1z22_A*
Length = 168
Score = 57.1 bits (139), Expect = 6e-11
Identities = 11/39 (28%), Positives = 20/39 (51%)
Query: 96 RFLSLTTGLYRGTMGFLLIFDVTNENSFKDVEKWLLQIK 134
F ++T YRG +L+F T+ SF+ + W ++
Sbjct: 66 EFDAITKAYYRGAQACVLVFSTTDRESFEAISSWREKVV 104
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation,
cytoplasm, HOST- virus interaction, nucleotide-binding,
nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens}
PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A*
1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C*
3ch5_A* 1qg4_A* 3ea5_A* 1qg2_A* 1byu_A* 3ran_A* 3gjx_C*
...
Length = 221
Score = 57.7 bits (140), Expect = 7e-11
Identities = 11/39 (28%), Positives = 20/39 (51%)
Query: 96 RFLSLTTGLYRGTMGFLLIFDVTNENSFKDVEKWLLQIK 134
+F L G Y +++FDVT+ ++K+V W +
Sbjct: 76 KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLV 114
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle
structural genomics center for infectious disease,
ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon
cuniculi}
Length = 218
Score = 57.3 bits (139), Expect = 9e-11
Identities = 10/39 (25%), Positives = 21/39 (53%)
Query: 96 RFLSLTTGLYRGTMGFLLIFDVTNENSFKDVEKWLLQIK 134
+ L Y G G +L FDVT+ + +++ +W+ + +
Sbjct: 73 KKAVLKDVYYIGASGAILFFDVTSRITCQNLARWVKEFQ 111
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural
genomics, structural genomics consortium, SGC, protein
transport; HET: GDP; 2.30A {Homo sapiens}
Length = 193
Score = 56.9 bits (138), Expect = 1e-10
Identities = 15/39 (38%), Positives = 27/39 (69%)
Query: 96 RFLSLTTGLYRGTMGFLLIFDVTNENSFKDVEKWLLQIK 134
R+ ++T+ YRG +G LL+FD+T ++ VE+WL ++
Sbjct: 86 RYRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELY 124
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics,
structural genomics consortium, SGC, protein transport;
HET: GDP; 2.20A {Homo sapiens}
Length = 200
Score = 56.9 bits (138), Expect = 1e-10
Identities = 14/39 (35%), Positives = 23/39 (58%)
Query: 96 RFLSLTTGLYRGTMGFLLIFDVTNENSFKDVEKWLLQIK 134
RF S+T YRG G LL++D+T+ ++ + WL +
Sbjct: 86 RFRSVTRSYYRGAAGALLVYDITSRETYNSLAAWLTDAR 124
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle
transport, hydrolase; HET: GDP; 1.55A {Homo sapiens}
SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A*
2gzh_A* 2d7c_A* 3bfk_A*
Length = 199
Score = 56.9 bits (138), Expect = 1e-10
Identities = 13/39 (33%), Positives = 28/39 (71%)
Query: 96 RFLSLTTGLYRGTMGFLLIFDVTNENSFKDVEKWLLQIK 134
R+ +T+ YRG +G LL++D+ ++++VE+WL +++
Sbjct: 66 RYRRITSAYYRGAVGALLVYDIAKHLTYENVERWLKELR 104
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular
transport, endocytosis, prenylation, protein transport,
transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8
PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Length = 186
Score = 56.4 bits (137), Expect = 1e-10
Identities = 14/39 (35%), Positives = 23/39 (58%)
Query: 96 RFLSLTTGLYRGTMGFLLIFDVTNENSFKDVEKWLLQIK 134
RF S+T YRG G LL++D+T+ ++ + WL +
Sbjct: 71 RFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDAR 109
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular
transport, acetylation, golgi apparatus, lipoprotein,
membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Length = 223
Score = 57.0 bits (138), Expect = 1e-10
Identities = 11/39 (28%), Positives = 28/39 (71%)
Query: 96 RFLSLTTGLYRGTMGFLLIFDVTNENSFKDVEKWLLQIK 134
R+ ++T+ YRG +G L+++D++ +S+++ WL +++
Sbjct: 74 RYRAITSAYYRGAVGALIVYDISKSSSYENCNHWLSELR 112
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular
trafficking, protein transport; HET: GDP; 2.15A {Homo
sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Length = 179
Score = 56.0 bits (136), Expect = 2e-10
Identities = 12/39 (30%), Positives = 23/39 (58%)
Query: 96 RFLSLTTGLYRGTMGFLLIFDVTNENSFKDVEKWLLQIK 134
RF ++T YRG G L+++D+T +++ + WL +
Sbjct: 76 RFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDAR 114
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics,
GTP-binding, nucleotide-binding, signaling protein; HET:
GDP; 1.89A {Plasmodium falciparum}
Length = 208
Score = 56.4 bits (136), Expect = 2e-10
Identities = 12/39 (30%), Positives = 23/39 (58%)
Query: 96 RFLSLTTGLYRGTMGFLLIFDVTNENSFKDVEKWLLQIK 134
R+ S+ YRG +++FD++N N+ + W+ Q+K
Sbjct: 105 RYASIVPLYYRGATCAIVVFDISNSNTLDRAKTWVNQLK 143
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular
trafficking, GTP-binding, lipoprotein, prenylation,
protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP:
c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Length = 191
Score = 55.7 bits (135), Expect = 3e-10
Identities = 13/39 (33%), Positives = 29/39 (74%)
Query: 96 RFLSLTTGLYRGTMGFLLIFDVTNENSFKDVEKWLLQIK 134
R+ ++T+ YRG +G LL++D+ ++++VE+WL +++
Sbjct: 90 RYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELR 128
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking,
protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP:
c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Length = 170
Score = 54.8 bits (133), Expect = 4e-10
Identities = 14/39 (35%), Positives = 28/39 (71%)
Query: 96 RFLSLTTGLYRGTMGFLLIFDVTNENSFKDVEKWLLQIK 134
RF +L YR + G +L++D+T+E+SF+ V+ W+ +++
Sbjct: 67 RFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELR 105
>3bbp_A RAB-6, RAS-related protein RAB-6A; golgi complex, GRIP domain, RAB
GTPase, ARL GTPase, golgin, RAB effector, clAsp protein;
HET: GTP; 3.00A {Homo sapiens}
Length = 211
Score = 55.0 bits (133), Expect = 6e-10
Identities = 13/39 (33%), Positives = 23/39 (58%)
Query: 96 RFLSLTTGLYRGTMGFLLIFDVTNENSFKDVEKWLLQIK 134
RF SL R + ++++D+TN NSF+ KW+ ++
Sbjct: 77 RFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVR 115
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular
trafficking, protein transport; HET: GNP; 1.81A {Mus
musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Length = 189
Score = 54.1 bits (131), Expect = 9e-10
Identities = 12/40 (30%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
Query: 96 RF-LSLTTGLYRGTMGFLLIFDVTNENSFKDVEKWLLQIK 134
RF S+ YR + ++D+TN SF + W+ + K
Sbjct: 81 RFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECK 120
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP
binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB:
3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Length = 179
Score = 54.1 bits (131), Expect = 1e-09
Identities = 13/39 (33%), Positives = 22/39 (56%)
Query: 96 RFLSLTTGLYRGTMGFLLIFDVTNENSFKDVEKWLLQIK 134
RF SL R + ++++D+TN NSF KW+ ++
Sbjct: 75 RFRSLIPSYIRDSTVAVVVYDITNTNSFHQTSKWIDDVR 113
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue,
structural genomics, structural genomics consortium,
SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens}
SCOP: c.37.1.8
Length = 192
Score = 54.2 bits (131), Expect = 1e-09
Identities = 14/39 (35%), Positives = 27/39 (69%)
Query: 96 RFLSLTTGLYRGTMGFLLIFDVTNENSFKDVEKWLLQIK 134
RF SL YRG+ ++++D+T ++SF ++KW+ ++K
Sbjct: 84 RFHSLAPMYYRGSAAAVIVYDITKQDSFYTLKKWVKELK 122
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase,
rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus
musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Length = 170
Score = 53.3 bits (129), Expect = 1e-09
Identities = 11/39 (28%), Positives = 25/39 (64%)
Query: 96 RFLSLTTGLYRGTMGFLLIFDVTNENSFKDVEKWLLQIK 134
RF +L YRG+ ++++D+T E +F ++ W+ +++
Sbjct: 67 RFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELR 105
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics
consortium, SGC, GDP, membrane, nucleotide-binding,
nucleotide binding protein; HET: GDP; 1.82A {Homo
sapiens}
Length = 195
Score = 52.6 bits (127), Expect = 4e-09
Identities = 10/40 (25%), Positives = 18/40 (45%), Gaps = 1/40 (2%)
Query: 96 RFLSLTTGLY-RGTMGFLLIFDVTNENSFKDVEKWLLQIK 134
+ FL++F VT+ SF V + LL+++
Sbjct: 84 DAGGWLRDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLR 123
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein
transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8
PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A*
1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A*
2hei_A* 1z07_A*
Length = 170
Score = 51.8 bits (125), Expect = 5e-09
Identities = 13/39 (33%), Positives = 24/39 (61%)
Query: 96 RFLSLTTGLYRGTMGFLLIFDVTNENSFKDVEKWLLQIK 134
R+ SL YRG ++++D+TNE SF + W+ +++
Sbjct: 67 RYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQ 105
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide,
transport protein; HET: GNH; 2.08A {Arabidopsis
thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Length = 181
Score = 51.4 bits (124), Expect = 1e-08
Identities = 15/39 (38%), Positives = 26/39 (66%)
Query: 96 RFLSLTTGLYRGTMGFLLIFDVTNENSFKDVEKWLLQIK 134
R+ SL YRG +++FDVTN+ SF+ +KW+ +++
Sbjct: 73 RYHSLAPMYYRGAAAAIIVFDVTNQASFERAKKWVQELQ 111
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis,
structural genomics, structural genomics consortium,
SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens}
SCOP: c.37.1.8 PDB: 2ery_A*
Length = 181
Score = 51.4 bits (124), Expect = 1e-08
Identities = 13/39 (33%), Positives = 19/39 (48%)
Query: 96 RFLSLTTGLYRGTMGFLLIFDVTNENSFKDVEKWLLQIK 134
F ++ R GFLL+F + + SF +V K QI
Sbjct: 69 EFGAMREQYMRAGHGFLLVFAINDRQSFNEVGKLFTQIL 107
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL,
RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens}
SCOP: c.37.1.8 PDB: 2a78_A*
Length = 187
Score = 51.4 bits (124), Expect = 1e-08
Identities = 10/39 (25%), Positives = 17/39 (43%)
Query: 96 RFLSLTTGLYRGTMGFLLIFDVTNENSFKDVEKWLLQIK 134
+ ++ +R GFL +F +T SF + QI
Sbjct: 78 DYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQIL 116
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein;
HET: GNP; 1.76A {Mus musculus}
Length = 169
Score = 51.0 bits (123), Expect = 1e-08
Identities = 10/40 (25%), Positives = 18/40 (45%), Gaps = 1/40 (2%)
Query: 96 RFLSLTTGLY-RGTMGFLLIFDVTNENSFKDVEKWLLQIK 134
+ FL++F VT+ SF V + LL+++
Sbjct: 63 DAGGWLQDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLR 102
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene,
disease mutation, golgi apparatus, GTP-binding,
lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo
sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Length = 190
Score = 51.1 bits (123), Expect = 1e-08
Identities = 12/39 (30%), Positives = 19/39 (48%)
Query: 96 RFLSLTTGLYRGTMGFLLIFDVTNENSFKDVEKWLLQIK 134
+ ++ R GFL +F + N SF D+ + QIK
Sbjct: 81 EYSAMRDQYMRTGEGFLCVFAINNSKSFADINLYREQIK 119
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase,
ribosylating toxin, GTP-binding, lipoprotein,
prenylation; HET: GDP; 2.66A {Homo sapiens}
Length = 206
Score = 51.1 bits (123), Expect = 1e-08
Identities = 10/39 (25%), Positives = 17/39 (43%)
Query: 96 RFLSLTTGLYRGTMGFLLIFDVTNENSFKDVEKWLLQIK 134
+ ++ +R GFL +F +T SF + QI
Sbjct: 74 DYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQIL 112
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein,
fluor membrane, lipoprotein, palmitate, prenylation;
HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X*
2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A*
6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A*
1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Length = 166
Score = 50.6 bits (122), Expect = 1e-08
Identities = 12/39 (30%), Positives = 21/39 (53%)
Query: 96 RFLSLTTGLYRGTMGFLLIFDVTNENSFKDVEKWLLQIK 134
+ ++ R GFL +F + N SF+D+ ++ QIK
Sbjct: 63 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIK 101
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein;
HET: GDP; 1.20A {Mus musculus} PDB: 3kkp_A* 3kko_A*
3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Length = 183
Score = 50.6 bits (122), Expect = 2e-08
Identities = 11/39 (28%), Positives = 22/39 (56%)
Query: 96 RFLSLTTGLYRGTMGFLLIFDVTNENSFKDVEKWLLQIK 134
F ++ R GFL+++ VT++ SF+ V+++ I
Sbjct: 78 EFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLIL 116
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase;
HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A*
4dso_A*
Length = 189
Score = 50.7 bits (122), Expect = 2e-08
Identities = 12/39 (30%), Positives = 20/39 (51%)
Query: 96 RFLSLTTGLYRGTMGFLLIFDVTNENSFKDVEKWLLQIK 134
+ ++ R GFL +F + N SF+D+ + QIK
Sbjct: 64 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIK 102
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein;
HET: GNP; 1.66A {Homo sapiens} PDB: 3q7p_A* 3q7q_A*
2gjs_A* 2dpx_A*
Length = 166
Score = 50.2 bits (121), Expect = 2e-08
Identities = 6/39 (15%), Positives = 18/39 (46%)
Query: 96 RFLSLTTGLYRGTMGFLLIFDVTNENSFKDVEKWLLQIK 134
L +++++ VT++ SF+ + +Q++
Sbjct: 61 GGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLR 99
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural
genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo
sapiens}
Length = 201
Score = 50.7 bits (122), Expect = 2e-08
Identities = 9/39 (23%), Positives = 20/39 (51%)
Query: 96 RFLSLTTGLYRGTMGFLLIFDVTNENSFKDVEKWLLQIK 134
+ L G G++L++ VT+ +SF+ +E ++
Sbjct: 84 EYSILPYSFIIGVHGYVLVYSVTSLHSFQVIESLYQKLH 122
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase,
signaling protein; HET: GDP; 1.50A {Saguinus oedipus}
SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A*
1zc4_A* 2kwi_A* 2ke5_A*
Length = 168
Score = 50.2 bits (121), Expect = 2e-08
Identities = 10/39 (25%), Positives = 17/39 (43%)
Query: 96 RFLSLTTGLYRGTMGFLLIFDVTNENSFKDVEKWLLQIK 134
+ ++ +R GFL +F +T SF + QI
Sbjct: 64 DYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQIL 102
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE
delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} PDB:
1xtq_A* 1xtr_A* 1xts_A* 2l0x_A*
Length = 181
Score = 50.2 bits (121), Expect = 2e-08
Identities = 6/39 (15%), Positives = 17/39 (43%)
Query: 96 RFLSLTTGLYRGTMGFLLIFDVTNENSFKDVEKWLLQIK 134
+ G++L++ VT+ SF+ ++ ++
Sbjct: 66 EYSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLL 104
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP;
1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Length = 167
Score = 49.8 bits (120), Expect = 3e-08
Identities = 11/39 (28%), Positives = 22/39 (56%)
Query: 96 RFLSLTTGLYRGTMGFLLIFDVTNENSFKDVEKWLLQIK 134
+F S+ + GF+L++ + N+ SF+D++ QI
Sbjct: 63 QFASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQII 101
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein;
HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Length = 172
Score = 49.4 bits (119), Expect = 3e-08
Identities = 7/39 (17%), Positives = 19/39 (48%)
Query: 96 RFLSLTTGLYRGTMGFLLIFDVTNENSFKDVEKWLLQIK 134
+F ++ F+L++ +T+ S ++++ QI
Sbjct: 63 QFPAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQIC 101
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis,
structural genomics, structural genomics consortium,
SGC, transport protein; HET: GDP; 1.90A {Homo sapiens}
SCOP: c.37.1.8
Length = 199
Score = 49.9 bits (120), Expect = 4e-08
Identities = 8/39 (20%), Positives = 18/39 (46%)
Query: 96 RFLSLTTGLYRGTMGFLLIFDVTNENSFKDVEKWLLQIK 134
+F ++ F+L+F VT++ S +++ I
Sbjct: 68 QFPAMQRLSISKGHAFILVFSVTSKQSLEELGPIYKLIV 106
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein
complex, effectors, signaling protein; HET: GTP; 1.90A
{Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A*
3cf6_R* 3brw_D*
Length = 167
Score = 49.4 bits (119), Expect = 4e-08
Identities = 9/39 (23%), Positives = 21/39 (53%)
Query: 96 RFLSLTTGLYRGTMGFLLIFDVTNENSFKDVEKWLLQIK 134
+F ++ + GF L++ +T +++F D++ QI
Sbjct: 63 QFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQIL 101
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural
genomics consortium, SGC, alternative splicing, ANK
repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens}
Length = 184
Score = 48.3 bits (116), Expect = 1e-07
Identities = 6/29 (20%), Positives = 14/29 (48%)
Query: 105 YRGTMGFLLIFDVTNENSFKDVEKWLLQI 133
+ +F + +E SF+ V + L++
Sbjct: 83 AAWVDAVVFVFSLEDEISFQTVYNYFLRL 111
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2,
ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding,
GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB:
3d6t_B*
Length = 184
Score = 48.1 bits (115), Expect = 1e-07
Identities = 8/40 (20%), Positives = 16/40 (40%), Gaps = 1/40 (2%)
Query: 96 RFLSLTTGLYRGTMGFLLIFDVTNENS-FKDVEKWLLQIK 134
F S +L ++D++ + ++ WL IK
Sbjct: 68 EFYSTHPHFMTQRALYLAVYDLSKGQAEVDAMKPWLFNIK 107
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding,
polymorphism, nucleotide-binding, alternative splicing,
protein transport; HET: CAF; 1.5A {Homo sapiens} PDB:
2bmj_A
Length = 178
Score = 48.0 bits (115), Expect = 1e-07
Identities = 7/30 (23%), Positives = 14/30 (46%)
Query: 105 YRGTMGFLLIFDVTNENSFKDVEKWLLQIK 134
+ +F + +ENSF+ V + Q+
Sbjct: 70 SGWADAVIFVFSLEDENSFQAVSRLHGQLS 99
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK
family, structur genomics, structural genomics
consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo
sapiens} SCOP: c.37.1.8
Length = 211
Score = 47.7 bits (114), Expect = 2e-07
Identities = 5/30 (16%), Positives = 17/30 (56%)
Query: 105 YRGTMGFLLIFDVTNENSFKDVEKWLLQIK 134
+ +L+++ +T+ SF+ + +Q++
Sbjct: 109 MQVGDAYLIVYSITDRASFEKASELRIQLR 138
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase,
conformational change, cysteine-modified, G-protein
hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B*
2ht6_A*
Length = 192
Score = 47.7 bits (114), Expect = 3e-07
Identities = 5/30 (16%), Positives = 17/30 (56%)
Query: 105 YRGTMGFLLIFDVTNENSFKDVEKWLLQIK 134
+ +L+++ +T+ SF+ + +Q++
Sbjct: 78 MQVGDAYLIVYSITDRASFEKASELRIQLR 107
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP
hydrolysis, YPT/RAB protein, endocytosis, hydrolase;
HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP:
c.37.1.8
Length = 170
Score = 46.3 bits (110), Expect = 5e-07
Identities = 13/39 (33%), Positives = 19/39 (48%)
Query: 96 RFLSLTTGLYRGTMGFLLIFDVTNENSFKDVEKWLLQIK 134
RF SL YR L+++DVT SF W+ ++
Sbjct: 64 RFASLAPXYYRNAQAALVVYDVTKPQSFIKARHWVKELH 102
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and
GEM like GTP protein 1, structural genomics; HET: GDP;
2.50A {Homo sapiens}
Length = 175
Score = 46.0 bits (110), Expect = 7e-07
Identities = 4/30 (13%), Positives = 17/30 (56%)
Query: 105 YRGTMGFLLIFDVTNENSFKDVEKWLLQIK 134
+G +++++ + + SF+ + +Q++
Sbjct: 75 LQGGSAYVIVYSIADRGSFESASELRIQLR 104
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP
binding, GTP hydrolysis, structural genomics, structural
genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens}
SCOP: c.37.1.8
Length = 196
Score = 44.5 bits (106), Expect = 3e-06
Identities = 9/30 (30%), Positives = 17/30 (56%)
Query: 105 YRGTMGFLLIFDVTNENSFKDVEKWLLQIK 134
R GF+L++D+T+ SF++V +
Sbjct: 96 MRWGEGFVLVYDITDRGSFEEVLPLKNILD 125
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium,
SGC, limited proteolysis, GTP-binding,
nucleotide-binding, signaling protein; HET: GDP; 1.85A
{Homo sapiens}
Length = 187
Score = 42.2 bits (100), Expect = 2e-05
Identities = 6/30 (20%), Positives = 12/30 (40%)
Query: 105 YRGTMGFLLIFDVTNENSFKDVEKWLLQIK 134
FL+++ V + SF +L +
Sbjct: 89 LNWAHAFLVVYSVDSRQSFDSSSSYLELLA 118
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding,
GTP-binding, signaling Pro lipoprotein, prenylation;
HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B*
Length = 194
Score = 38.5 bits (90), Expect = 4e-04
Identities = 12/31 (38%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
Query: 105 YRGTMGFLLIFDVTNENSFKDV-EKWLLQIK 134
Y + LL F V N SF ++ KW +IK
Sbjct: 92 YADSDVVLLCFAVNNRTSFDNISTKWEPEIK 122
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane,
prenylation, hydrolase, nucleotide-binding, methylation,
lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo
sapiens}
Length = 214
Score = 37.4 bits (87), Expect = 0.001
Identities = 11/31 (35%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
Query: 105 YRGTMGFLLIFDVTNENSFKDV-EKWLLQIK 134
Y LL FDVT+ NSF ++ +W ++
Sbjct: 103 YPDASVLLLCFDVTSPNSFDNIFNRWYPEVN 133
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding,
nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum
tepidum}
Length = 535
Score = 38.0 bits (88), Expect = 0.001
Identities = 5/39 (12%), Positives = 13/39 (33%), Gaps = 3/39 (7%)
Query: 96 RFLSLTTGLYRGTMGFLLIFDVTNENSFKDVEKWLLQIK 134
+ + ++L+ D + + WL I+
Sbjct: 110 IMHASHQFFMTRSSVYMLLLDSR---TDSNKHYWLRHIE 145
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP
hydrolysis, structural genomics, structural genomics
consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP:
c.37.1.8
Length = 207
Score = 36.7 bits (85), Expect = 0.002
Identities = 10/31 (32%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Query: 105 YRGTMGFLLIFDVTNENSFKDV-EKWLLQIK 134
Y T L+ F V + +S +++ EKW+ ++K
Sbjct: 94 YPDTDVILMCFSVDSPDSLENIPEKWVPEVK 124
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm,
lipoprotein, membrane, methylation, nucleotide-binding,
prenylation, ----; HET: GDP; 1.53A {Arabidopsis
thaliana} PDB: 2nty_C* 2wbl_C
Length = 182
Score = 35.8 bits (83), Expect = 0.003
Identities = 11/31 (35%), Positives = 22/31 (70%), Gaps = 1/31 (3%)
Query: 105 YRGTMGFLLIFDVTNENSFKDV-EKWLLQIK 134
YRG F+L F + ++ S+++V +KW+ ++K
Sbjct: 77 YRGADVFILAFSLISKASYENVSKKWIPELK 107
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein,
signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB:
2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A*
3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B*
1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Length = 201
Score = 35.1 bits (81), Expect = 0.006
Identities = 9/31 (29%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Query: 105 YRGTMGFLLIFDVTNENSFKDV-EKWLLQIK 134
Y T L+ F + + +S +++ EKW ++K
Sbjct: 94 YPDTDVILMCFSIDSPDSLENIPEKWTPEVK 124
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein,
ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP;
1.78A {Arabidopsis thaliana}
Length = 212
Score = 34.6 bits (80), Expect = 0.008
Identities = 10/31 (32%), Positives = 22/31 (70%), Gaps = 1/31 (3%)
Query: 105 YRGTMGFLLIFDVTNENSFKDV-EKWLLQIK 134
YRG F+L F + ++ S+++V +KW+ +++
Sbjct: 78 YRGADIFVLAFSLISKASYENVLKKWMPELR 108
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase,
GTP binding, protein binding, signali protein; HET: GNP;
2.30A {Homo sapiens}
Length = 204
Score = 34.4 bits (79), Expect = 0.011
Identities = 10/31 (32%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Query: 105 YRGTMGFLLIFDVTNENSFKDV-EKWLLQIK 134
Y T FL+ F + + SF++V KW +++
Sbjct: 99 YPQTDVFLICFSLVSPASFENVRAKWYPEVR 129
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase,
signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP:
c.37.1.8
Length = 205
Score = 34.3 bits (79), Expect = 0.011
Identities = 8/31 (25%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
Query: 105 YRGTMGFLLIFDVTNENSFKDV-EKWLLQIK 134
Y + L+ FD++ + V +KW +I+
Sbjct: 97 YPDSDAVLICFDISRPETLDSVLKKWKGEIQ 127
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling
protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8
PDB: 2v55_B*
Length = 184
Score = 33.9 bits (78), Expect = 0.012
Identities = 8/31 (25%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
Query: 105 YRGTMGFLLIFDVTNENSFKDV-EKWLLQIK 134
Y + L+ FD++ + V +KW +I+
Sbjct: 76 YPDSDAVLICFDISRPETLDSVLKKWKGEIQ 106
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase,
glucorticoid receptor, structural genomics consortium,
SGC, alternative splicing; HET: GNP; 1.80A {Homo
sapiens}
Length = 255
Score = 34.2 bits (78), Expect = 0.013
Identities = 9/26 (34%), Positives = 14/26 (53%), Gaps = 2/26 (7%)
Query: 110 GFLLIFDVTNEN--SFKDVEKWLLQI 133
GFLL DV+ +F D K++ +
Sbjct: 165 GFLLGIDVSRGMNRNFDDQLKFVSNL 190
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super
family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8
PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D*
2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A*
3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Length = 186
Score = 33.2 bits (76), Expect = 0.021
Identities = 9/31 (29%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
Query: 105 YRGTMGFLLIFDVTNENSFKDV-EKWLLQIK 134
Y T L+ F + + SF++V KW +++
Sbjct: 74 YPQTDVSLICFSLVSPASFENVRAKWYPEVR 104
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta,
hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Length = 194
Score = 32.9 bits (75), Expect = 0.031
Identities = 13/31 (41%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
Query: 105 YRGTMGFLLIFDVTNENSFKDV-EKWLLQIK 134
Y T FL+ F V N SF++V E+W+ ++K
Sbjct: 87 YPMTDVFLICFSVVNPASFQNVKEEWVPELK 117
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin,
small GTPase, structural genomic consortium, SGC; HET:
GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Length = 214
Score = 32.5 bits (74), Expect = 0.040
Identities = 8/31 (25%), Positives = 14/31 (45%), Gaps = 1/31 (3%)
Query: 105 YRGTMGFLLIFDVTNENSFKDV-EKWLLQIK 134
Y + LL FD++ + +KW +I
Sbjct: 96 YSDSDAVLLCFDISRPETVDSALKKWRTEIL 126
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics,
structural genomics consortium,; HET: GDP; 1.73A {Homo
sapiens}
Length = 201
Score = 32.0 bits (73), Expect = 0.062
Identities = 14/32 (43%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
Query: 105 YRGTMGFLLIFDVTNENSFKDV-EKWLLQIKV 135
Y T FLL F V + +SF++V EKW+ +I+
Sbjct: 89 YTNTDIFLLCFSVVSPSSFQNVSEKWVPEIRC 120
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 32.3 bits (73), Expect = 0.084
Identities = 28/180 (15%), Positives = 54/180 (30%), Gaps = 61/180 (33%)
Query: 38 KEFSFNFGTQLGRRGIPLLKHLKYLGTGTHGKTVGIVFPAI-----SVTYSIGPRYFRFP 92
+ +FG + G+R + + +F I S T+ +
Sbjct: 1670 VNLTIHFGGEKGKRIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFR-SEK----- 1723
Query: 93 LVSRFLSLTTGLYRGTMGF----LLIFDVTNENSFKDVEKW-LLQI-KVMDG-------A 139
LS T F L + + +F+D++ L+ G A
Sbjct: 1724 ---GLLSATQ--------FTQPALTLMEKA---AFEDLKSKGLIPADATFAGHSLGEYAA 1769
Query: 140 L------FTHFE--LQIVFMRGCLELLQRCREV------------VTPDQIMFGSTQSSL 179
L + E +++VF RG +Q + P ++ +Q +L
Sbjct: 1770 LASLADVMS-IESLVEVVFYRG--MTMQVAVPRDELGRSNYGMIAINPGRVAASFSQEAL 1826
Score = 30.0 bits (67), Expect = 0.52
Identities = 11/61 (18%), Positives = 17/61 (27%), Gaps = 22/61 (36%)
Query: 93 LVSRFLSLTTGLYRGTMGFLLIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMR 152
LV +FL + L + + F V T FE ++
Sbjct: 60 LVGKFLGYVSSL----------VEPSKVGQFDQVLN----------LCLTEFENC--YLE 97
Query: 153 G 153
G
Sbjct: 98 G 98
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase,
cell adhesion, nucleotide-binding, protein engineering,
RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa}
PDB: 2wkr_A* 2wkp_A*
Length = 332
Score = 30.7 bits (69), Expect = 0.24
Identities = 10/31 (32%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
Query: 105 YRGTMGFLLIFDVTNENSFKDV-EKWLLQIK 134
Y T FL+ F + + SF V KW +++
Sbjct: 224 YPQTDVFLICFSLVSPASFHHVRAKWYPEVR 254
>4e5n_A Thermostable phosphite dehydrogenase; D-2-hydroxyacid
dehydrogenase, oxidoreductase; HET: NAD; 1.70A
{Pseudomonas stutzeri} PDB: 4e5k_A* 4ebf_A* 4e5p_A*
4e5m_A*
Length = 330
Score = 28.3 bits (64), Expect = 1.5
Identities = 6/15 (40%), Positives = 9/15 (60%)
Query: 60 KYLGTGTHGKTVGIV 74
++ GTG TVG +
Sbjct: 137 RFYGTGLDNATVGFL 151
>1xp4_A D-alanyl-D-alanine carboxypeptidase; five-stranded antiparallel
beta-sheet, omega-like loop, hydrolase; 2.80A
{Streptococcus pneumoniae R6} SCOP: b.105.1.1 e.3.1.1
Length = 379
Score = 27.7 bits (62), Expect = 2.4
Identities = 9/42 (21%), Positives = 16/42 (38%), Gaps = 3/42 (7%)
Query: 30 KVTKMTAAKEFSFNFGTQLGRRGIPLLKHLKYLGTGTHG-KT 70
+V ++T +F T +L+ + G G KT
Sbjct: 186 QVLEITKKPSSTFAGMTITSTN--YMLEGMPAYRGGFDGLKT 225
>2dbq_A Glyoxylate reductase; D-3-phosphoglycerate dehydrogenase, ST
genomics, NPPSFA; HET: NAP; 1.70A {Pyrococcus
horikoshii} PDB: 2dbr_A* 2dbz_A*
Length = 334
Score = 27.2 bits (61), Expect = 3.3
Identities = 7/14 (50%), Positives = 11/14 (78%)
Query: 61 YLGTGTHGKTVGIV 74
+LG +GKT+GI+
Sbjct: 143 FLGYDVYGKTIGII 156
>2gcg_A Glyoxylate reductase/hydroxypyruvate reductase; NAD(P) rossmann
fold, formate/glycerate dehydrogenase substr binding
domain, oxidoreductase; HET: NDP; 2.20A {Homo sapiens}
PDB: 2wwr_A 2h1s_A 2q50_A
Length = 330
Score = 26.8 bits (60), Expect = 4.2
Identities = 6/14 (42%), Positives = 7/14 (50%)
Query: 61 YLGTGTHGKTVGIV 74
G G TVGI+
Sbjct: 148 LCGYGLTQSTVGII 161
>4g2n_A D-isomer specific 2-hydroxyacid dehydrogenase, Na; structural
genomics, protein structure initiative, nysgrc, P
biology; 1.70A {Polaromonas SP}
Length = 345
Score = 26.8 bits (60), Expect = 4.3
Identities = 6/14 (42%), Positives = 8/14 (57%)
Query: 61 YLGTGTHGKTVGIV 74
LG G G+ +GI
Sbjct: 166 LLGMGLTGRRLGIF 179
>2cuk_A Glycerate dehydrogenase/glyoxylate reductase; structural genomics,
riken structur genomics/proteomics initiative, RSGI,
NPPSFA; HET: NHE; 2.00A {Thermus thermophilus}
Length = 311
Score = 26.7 bits (60), Expect = 4.4
Identities = 6/14 (42%), Positives = 8/14 (57%)
Query: 61 YLGTGTHGKTVGIV 74
LG G T+G+V
Sbjct: 137 LLGLDLQGLTLGLV 150
>1gdh_A D-glycerate dehydrogenase; oxidoreductase(CHOH (D)-NAD(P)+ (A));
2.40A {Hyphomicrobium methylovorum} SCOP: c.2.1.4
c.23.12.1
Length = 320
Score = 26.7 bits (60), Expect = 4.5
Identities = 5/14 (35%), Positives = 7/14 (50%)
Query: 61 YLGTGTHGKTVGIV 74
+G KT+GI
Sbjct: 139 LVGEKLDNKTLGIY 152
>2w2k_A D-mandelate dehydrogenase; 2-hydroxyacid dehydrogenase,
oxidoreductase; 1.85A {Rhodotorula graminis} PDB:
2w2l_A* 2w2l_D* 2w2k_B
Length = 348
Score = 26.5 bits (59), Expect = 5.2
Identities = 3/25 (12%), Positives = 6/25 (24%)
Query: 50 RRGIPLLKHLKYLGTGTHGKTVGIV 74
+ + G +G V
Sbjct: 145 ETFNRVHLEIGKSAHNPRGHVLGAV 169
>3ty2_A 5'-nucleotidase SURE; surviVal protein, phosphatase, hydrolase;
HET: MSE; 1.89A {Coxiella burnetii}
Length = 261
Score = 26.3 bits (59), Expect = 6.0
Identities = 4/21 (19%), Positives = 13/21 (61%)
Query: 115 FDVTNENSFKDVEKWLLQIKV 135
D+T+ +F + W+ ++++
Sbjct: 241 VDLTHYEAFDQLASWVKRLEM 261
>3ba1_A HPPR, hydroxyphenylpyruvate reductase; two domain protein,
substrate binding domain, cofactor bindi domain,
oxidoreductase; 1.47A {Solenostemon scutellarioides}
PDB: 3baz_A*
Length = 333
Score = 26.0 bits (58), Expect = 7.1
Identities = 7/13 (53%), Positives = 8/13 (61%)
Query: 62 LGTGTHGKTVGIV 74
L T GK VGI+
Sbjct: 158 LTTKFSGKRVGII 170
>2hbv_A 2-amino-3-carboxymuconate 6-semialdehyde decarbox; ACMSD,
TIM-barrel, decarboxylase, metaloenzyme, lyase; 1.65A
{Pseudomonas fluorescens} SCOP: c.1.9.15 PDB: 2hbx_A
Length = 334
Score = 25.9 bits (57), Expect = 7.4
Identities = 6/17 (35%), Positives = 10/17 (58%)
Query: 158 LQRCREVVTPDQIMFGS 174
L+ V+ D++M GS
Sbjct: 277 LELLVSVMGEDRVMLGS 293
>2hr7_A Insulin receptor; hormone receptor, leucine rich repeat,
transferase; HET: NAG BMA MAN FUC P33; 2.32A {Homo
sapiens}
Length = 486
Score = 26.4 bits (57), Expect = 7.5
Identities = 16/48 (33%), Positives = 22/48 (45%), Gaps = 2/48 (4%)
Query: 110 GFLLIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLEL 157
+LL+F V S KD+ L I+ LF ++ L I M EL
Sbjct: 59 DYLLLFRVYGLESLKDLFPNLTVIR--GSRLFFNYALVIFEMVHLKEL 104
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR;
fatty acid synthase, acyl-carrier-protein, beta-ketoacyl
RED beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae}
Length = 1688
Score = 26.4 bits (58), Expect = 7.7
Identities = 14/39 (35%), Positives = 17/39 (43%), Gaps = 6/39 (15%)
Query: 95 SRFLSLTTGLYR------GTMGFLLIFDVTNENSFKDVE 127
SRF T Y+ G G LI N+ S +DVE
Sbjct: 509 SRFSKQVTDYYQSIYAKYGAKGSTLIVVPFNQGSKQDVE 547
>3nur_A Amidohydrolase; TIM barrel; 1.75A {Staphylococcus aureus}
Length = 357
Score = 25.9 bits (57), Expect = 8.2
Identities = 3/17 (17%), Positives = 9/17 (52%)
Query: 158 LQRCREVVTPDQIMFGS 174
++ V D+I++ +
Sbjct: 299 FDLVKKEVGIDRILYAA 315
>2dvt_A Thermophilic reversible gamma-resorcylate decarbo; TIM barrel,
lyase; 1.70A {Rhizobium SP} SCOP: c.1.9.15 PDB: 2dvu_A*
2dvx_A* 3s4t_A*
Length = 327
Score = 25.9 bits (57), Expect = 8.3
Identities = 4/17 (23%), Positives = 8/17 (47%)
Query: 158 LQRCREVVTPDQIMFGS 174
L + D+I+F +
Sbjct: 270 LIDAILEIGADRILFST 286
>2gwg_A 4-oxalomesaconate hydratase; TIM-barrel like protein, structural
genomics, PSI, protein S initiative; 1.80A
{Rhodopseudomonas palustris} SCOP: c.1.9.15
Length = 350
Score = 26.1 bits (57), Expect = 8.6
Identities = 4/17 (23%), Positives = 8/17 (47%)
Query: 158 LQRCREVVTPDQIMFGS 174
+ V+ D ++F S
Sbjct: 267 IDLLNTVIPVDNVLFAS 283
>4dgs_A Dehydrogenase; structural genomics, PSI-biology, NEW YORK
structural genomi research consortium, nysgrc,
oxidoreductase; 2.50A {Sinorhizobium meliloti}
Length = 340
Score = 25.7 bits (57), Expect = 8.7
Identities = 5/13 (38%), Positives = 8/13 (61%)
Query: 62 LGTGTHGKTVGIV 74
LG GK +G++
Sbjct: 165 LGHSPKGKRIGVL 177
>2wm1_A 2-amino-3-carboxymuconate-6-semialdehyde decarboxylase;
neurological disorders, metal-dependent amidohydrolase,
kynurenine pathway; HET: 13P; 2.01A {Homo sapiens}
Length = 336
Score = 25.9 bits (57), Expect = 9.0
Identities = 4/17 (23%), Positives = 11/17 (64%)
Query: 158 LQRCREVVTPDQIMFGS 174
L+ +V+ D+++ G+
Sbjct: 274 LKLLTDVIGKDKVILGT 290
>1mx3_A CTBP1, C-terminal binding protein 1; nuclear protein,
phosphorylation, transcriptional corepresso
transcription repressor; HET: NAD; 1.95A {Homo sapiens}
SCOP: c.2.1.4 c.23.12.1 PDB: 1hku_A* 1hl3_A* 2hu2_A*
3ga0_A 2ome_A*
Length = 347
Score = 25.7 bits (57), Expect = 9.7
Identities = 4/24 (16%), Positives = 12/24 (50%)
Query: 51 RGIPLLKHLKYLGTGTHGKTVGIV 74
+ + ++ + G+T+GI+
Sbjct: 151 QSVEQIREVASGAARIRGETLGII 174
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.329 0.142 0.438
Gapped
Lambda K H
0.267 0.0783 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,727,004
Number of extensions: 152973
Number of successful extensions: 486
Number of sequences better than 10.0: 1
Number of HSP's gapped: 483
Number of HSP's successfully gapped: 114
Length of query: 179
Length of database: 6,701,793
Length adjustment: 87
Effective length of query: 92
Effective length of database: 4,272,666
Effective search space: 393085272
Effective search space used: 393085272
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 54 (24.5 bits)