RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy15036
(179 letters)
>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 194
Score = 33.7 bits (76), Expect = 0.007
Identities = 19/69 (27%), Positives = 35/69 (50%), Gaps = 3/69 (4%)
Query: 64 TGTHGKTVGIVFPAISVTYSIGPRYFRF---PLVSRFLSLTTGLYRGTMGFLLIFDVTNE 120
T + T+G+ F +V + RF ++T+ YRG+ G ++++DVT++
Sbjct: 32 TNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSYYRGSHGIIIVYDVTDQ 91
Query: 121 NSFKDVEKW 129
SF V+ W
Sbjct: 92 ESFNGVKMW 100
>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId:
10090]}
Length = 173
Score = 33.6 bits (76), Expect = 0.007
Identities = 18/41 (43%), Positives = 28/41 (68%)
Query: 96 RFLSLTTGLYRGTMGFLLIFDVTNENSFKDVEKWLLQIKVM 136
RF ++TT YRG MG +L++D+TNE SF ++ W+ I+
Sbjct: 67 RFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEH 107
>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 166
Score = 32.1 bits (72), Expect = 0.017
Identities = 15/34 (44%), Positives = 27/34 (79%)
Query: 96 RFLSLTTGLYRGTMGFLLIFDVTNENSFKDVEKW 129
RF ++TT YRG MG +L++D+T+E +F ++++W
Sbjct: 63 RFRTITTAYYRGAMGIILVYDITDERTFTNIKQW 96
>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId:
9606]}
Length = 166
Score = 30.2 bits (67), Expect = 0.070
Identities = 12/39 (30%), Positives = 23/39 (58%)
Query: 96 RFLSLTTGLYRGTMGFLLIFDVTNENSFKDVEKWLLQIK 134
RF ++T YRG G L+++D+T +++ + WL +
Sbjct: 65 RFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDAR 103
>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId:
9606]}
Length = 167
Score = 29.9 bits (66), Expect = 0.11
Identities = 16/59 (27%), Positives = 31/59 (52%)
Query: 96 RFLSLTTGLYRGTMGFLLIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGC 154
RF +L YR + G +L++D+T+E+SF+ V+ W+ +++ M G +
Sbjct: 64 RFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLEK 122
>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId:
9606]}
Length = 177
Score = 27.5 bits (60), Expect = 0.75
Identities = 20/77 (25%), Positives = 35/77 (45%), Gaps = 6/77 (7%)
Query: 96 RFLSLTTGLYRGTMGFLLIFDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCL 155
RF +LT YRG G +L++DVT ++F ++ WL +++ L +
Sbjct: 68 RFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKID--- 124
Query: 156 ELLQRCREVVTPDQIMF 172
+ REV + + F
Sbjct: 125 ---KENREVDRNEGLKF 138
>d3bula2 c.23.6.1 (A:741-896) Methionine synthase, C-terminal domain
{Escherichia coli [TaxId: 562]}
Length = 156
Score = 25.8 bits (56), Expect = 2.8
Identities = 8/64 (12%), Positives = 21/64 (32%)
Query: 115 FDVTNENSFKDVEKWLLQIKVMDGALFTHFELQIVFMRGCLELLQRCREVVTPDQIMFGS 174
+++ + EK L K ++ L L + + + + ++ G
Sbjct: 35 YEIVDLGVMVPAEKILRTAKEVNADLIGLSGLITPSLDEMVNVAKEMERQGFTIPLLIGG 94
Query: 175 TQSS 178
+S
Sbjct: 95 ATTS 98
>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId:
10116]}
Length = 169
Score = 25.6 bits (55), Expect = 2.8
Identities = 21/42 (50%), Positives = 29/42 (69%)
Query: 96 RFLSLTTGLYRGTMGFLLIFDVTNENSFKDVEKWLLQIKVMD 137
R+ ++TT YRG MGF+L++D+TNE SF V+ W QIK
Sbjct: 66 RYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYS 107
>d2f6ka1 c.1.9.15 (A:2-307) Putative amidohydrolase LP2961
{Lactobacillus plantarum [TaxId: 1590]}
Length = 306
Score = 25.8 bits (55), Expect = 3.3
Identities = 4/19 (21%), Positives = 9/19 (47%)
Query: 156 ELLQRCREVVTPDQIMFGS 174
L + P+ +++GS
Sbjct: 246 RQLPTLMSLAQPEHLLYGS 264
>d2hbva1 c.1.9.15 (A:3-333) 2-amino-3-carboxymuconate 6-semialdehyde
decarboxylase NbaD {Pseudomonas fluorescens [TaxId:
294]}
Length = 331
Score = 25.6 bits (54), Expect = 4.6
Identities = 6/19 (31%), Positives = 10/19 (52%)
Query: 156 ELLQRCREVVTPDQIMFGS 174
L+ V+ D++M GS
Sbjct: 273 GALELLVSVMGEDRVMLGS 291
>d1eoka_ c.1.8.5 (A:) Endo-beta-N-acetylglucosaminidase
{Flavobacterium meningosepticum, endoglycosidase F3
[TaxId: 238]}
Length = 282
Score = 24.8 bits (53), Expect = 6.6
Identities = 8/28 (28%), Positives = 13/28 (46%)
Query: 101 TTGLYRGTMGFLLIFDVTNENSFKDVEK 128
T G G M + +V+ N+ +D K
Sbjct: 255 TQGAKGGMMIYTYNSNVSYANAVRDAVK 282
>d2nn6h3 d.51.1.1 (H:168-293) Ribosomal RNA-processing protein 4,
RRP4 {Human (Homo sapiens) [TaxId: 9606]}
Length = 126
Score = 24.0 bits (52), Expect = 8.5
Identities = 7/30 (23%), Positives = 13/30 (43%)
Query: 148 IVFMRGCLELLQRCREVVTPDQIMFGSTQS 177
I +R C+ L R ++ I++ S
Sbjct: 67 ISRLRNCIISLVTQRMMLYDTSILYCYEAS 96
>d2gwga1 c.1.9.15 (A:1-342) 4-oxalomesaconate hydratase LigJ
{Rhodopseudomonas palustris [TaxId: 1076]}
Length = 342
Score = 24.4 bits (51), Expect = 8.5
Identities = 4/17 (23%), Positives = 8/17 (47%)
Query: 158 LQRCREVVTPDQIMFGS 174
+ V+ D ++F S
Sbjct: 267 IDLLNTVIPVDNVLFAS 283
>d1e8ca3 c.72.2.1 (A:104-337) UDP-N-acetylmuramyl tripeptide
synthetase MurE {Escherichia coli [TaxId: 562]}
Length = 234
Score = 24.4 bits (51), Expect = 8.6
Identities = 8/15 (53%), Positives = 12/15 (80%), Gaps = 1/15 (6%)
Query: 57 KHLKYLG-TGTHGKT 70
+L+ +G TGT+GKT
Sbjct: 3 DNLRLVGVTGTNGKT 17
>d4ubpa_ d.8.1.1 (A:) Urease, gamma-subunit {Bacillus pasteurii
[TaxId: 1474]}
Length = 100
Score = 23.4 bits (51), Expect = 9.6
Identities = 6/18 (33%), Positives = 11/18 (61%)
Query: 156 ELLQRCREVVTPDQIMFG 173
L++ + V+T D +M G
Sbjct: 55 MLMEEGKHVLTRDDVMEG 72
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.329 0.142 0.438
Gapped
Lambda K H
0.267 0.0760 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 666,711
Number of extensions: 29414
Number of successful extensions: 83
Number of sequences better than 10.0: 1
Number of HSP's gapped: 83
Number of HSP's successfully gapped: 21
Length of query: 179
Length of database: 2,407,596
Length adjustment: 80
Effective length of query: 99
Effective length of database: 1,309,196
Effective search space: 129610404
Effective search space used: 129610404
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 50 (23.0 bits)