BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy15037
(149 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|195495676|ref|XP_002095368.1| GE22356 [Drosophila yakuba]
gi|194181469|gb|EDW95080.1| GE22356 [Drosophila yakuba]
Length = 548
Score = 107 bits (267), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 62/153 (40%), Positives = 81/153 (52%), Gaps = 36/153 (23%)
Query: 5 EDGCKRIGCTE-CGFVFCKDCLQGAHIGPCDPGRTSMDQGGASTSDYAVDPT-------- 55
E C+++ C CG+VFC++CLQG HIG C P T+ + +Y VDP
Sbjct: 365 EPDCRKVTCQNGCGYVFCRNCLQGYHIGECLPEGTATS--AQNYGEYTVDPQCGVLCPQP 422
Query: 56 -----------------------RASQDCLQGAHIGPCDPERTSMDQGGASTSDYAVDPT 92
++CLQG HIG C PE T+ ++ +Y VDP
Sbjct: 423 GCGMGLLVEPDCRKVTCQNGCGYVFCRNCLQGYHIGECLPEGTATS--AQNSCEYTVDPN 480
Query: 93 RASQARWDDASQVTIKVSTKPCPSCRTATERAG 125
RA++ARW++AS VTIKVSTKPCP CRT TER G
Sbjct: 481 RAAEARWEEASNVTIKVSTKPCPKCRTPTERDG 513
>gi|195126605|ref|XP_002007761.1| GI12208 [Drosophila mojavensis]
gi|193919370|gb|EDW18237.1| GI12208 [Drosophila mojavensis]
Length = 464
Score = 87.8 bits (216), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 45/68 (66%), Positives = 52/68 (76%), Gaps = 4/68 (5%)
Query: 59 QDCLQGAHIGPCDPERTSMDQGGASTS-DYAVDPTRASQARWDDASQVTIKVSTKPCPSC 117
++CLQG HIG C PE TS G AS S +Y VDP RA++ARW++AS VTIKVSTKPCP C
Sbjct: 365 RNCLQGYHIGECLPEGTS---GAASNSCEYTVDPNRAAEARWEEASNVTIKVSTKPCPKC 421
Query: 118 RTATERAG 125
RT TER G
Sbjct: 422 RTPTERDG 429
>gi|289742101|gb|ADD19798.1| E3 ubiquitin protein ligase [Glossina morsitans morsitans]
Length = 471
Score = 85.9 bits (211), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 40/67 (59%), Positives = 52/67 (77%), Gaps = 2/67 (2%)
Query: 59 QDCLQGAHIGPCDPERTSMDQGGASTSDYAVDPTRASQARWDDASQVTIKVSTKPCPSCR 118
++CLQG H+G C P+ S++ G S+ +Y+VDP RA++ARWD+AS V IKV TKPCP CR
Sbjct: 372 RNCLQGYHLGDCLPD--SVNDGDPSSCEYSVDPNRAAEARWDEASNVAIKVLTKPCPKCR 429
Query: 119 TATERAG 125
TATER G
Sbjct: 430 TATERDG 436
>gi|16198297|gb|AAL13983.1| SD01679p [Drosophila melanogaster]
Length = 482
Score = 85.5 bits (210), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 41/67 (61%), Positives = 49/67 (73%), Gaps = 2/67 (2%)
Query: 59 QDCLQGAHIGPCDPERTSMDQGGASTSDYAVDPTRASQARWDDASQVTIKVSTKPCPSCR 118
++CLQG HIG C PE T ++ +Y VDP RA++ARWD+AS VTIKVSTKPCP CR
Sbjct: 383 RNCLQGYHIGECLPEGTGA--SATNSCEYTVDPNRAAEARWDEASNVTIKVSTKPCPKCR 440
Query: 119 TATERAG 125
T TER G
Sbjct: 441 TPTERDG 447
>gi|195592060|ref|XP_002085754.1| GD12138 [Drosophila simulans]
gi|194197763|gb|EDX11339.1| GD12138 [Drosophila simulans]
Length = 482
Score = 85.5 bits (210), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 41/67 (61%), Positives = 49/67 (73%), Gaps = 2/67 (2%)
Query: 59 QDCLQGAHIGPCDPERTSMDQGGASTSDYAVDPTRASQARWDDASQVTIKVSTKPCPSCR 118
++CLQG HIG C PE T ++ +Y VDP RA++ARWD+AS VTIKVSTKPCP CR
Sbjct: 383 RNCLQGYHIGECLPEGTGA--SATNSCEYTVDPNRAAEARWDEASNVTIKVSTKPCPKCR 440
Query: 119 TATERAG 125
T TER G
Sbjct: 441 TPTERDG 447
>gi|24667880|ref|NP_730600.1| parkin, isoform B [Drosophila melanogaster]
gi|24667884|ref|NP_730601.1| parkin, isoform C [Drosophila melanogaster]
gi|21217495|gb|AAM43930.1|AF510072_1 PARKIN [Drosophila melanogaster]
gi|20912875|gb|AAM18800.2| PARKIN [Drosophila melanogaster]
gi|23094208|gb|AAN12154.1| parkin, isoform B [Drosophila melanogaster]
gi|23094209|gb|AAN12155.1| parkin, isoform C [Drosophila melanogaster]
gi|202028284|gb|ACH95278.1| FI05213p [Drosophila melanogaster]
Length = 482
Score = 85.5 bits (210), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 41/67 (61%), Positives = 49/67 (73%), Gaps = 2/67 (2%)
Query: 59 QDCLQGAHIGPCDPERTSMDQGGASTSDYAVDPTRASQARWDDASQVTIKVSTKPCPSCR 118
++CLQG HIG C PE T ++ +Y VDP RA++ARWD+AS VTIKVSTKPCP CR
Sbjct: 383 RNCLQGYHIGECLPEGTGA--SATNSCEYTVDPNRAAEARWDEASNVTIKVSTKPCPKCR 440
Query: 119 TATERAG 125
T TER G
Sbjct: 441 TPTERDG 447
>gi|195348457|ref|XP_002040765.1| GM22162 [Drosophila sechellia]
gi|194122275|gb|EDW44318.1| GM22162 [Drosophila sechellia]
Length = 468
Score = 85.1 bits (209), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 41/67 (61%), Positives = 49/67 (73%), Gaps = 2/67 (2%)
Query: 59 QDCLQGAHIGPCDPERTSMDQGGASTSDYAVDPTRASQARWDDASQVTIKVSTKPCPSCR 118
++CLQG HIG C PE T ++ +Y VDP RA++ARWD+AS VTIKVSTKPCP CR
Sbjct: 369 RNCLQGYHIGECLPEGTGA--SATNSCEYTVDPNRAAEARWDEASNVTIKVSTKPCPKCR 426
Query: 119 TATERAG 125
T TER G
Sbjct: 427 TPTERDG 433
>gi|28864541|gb|AAO48768.1| PARKIN, partial [Drosophila melanogaster]
Length = 162
Score = 84.7 bits (208), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 41/67 (61%), Positives = 49/67 (73%), Gaps = 2/67 (2%)
Query: 59 QDCLQGAHIGPCDPERTSMDQGGASTSDYAVDPTRASQARWDDASQVTIKVSTKPCPSCR 118
++CLQG HIG C PE T ++ +Y VDP RA++ARWD+AS VTIKVSTKPCP CR
Sbjct: 63 RNCLQGYHIGECLPEGTGAS--ATNSCEYTVDPNRAAEARWDEASNVTIKVSTKPCPKCR 120
Query: 119 TATERAG 125
T TER G
Sbjct: 121 TPTERDG 127
>gi|194875358|ref|XP_001973584.1| GG13257 [Drosophila erecta]
gi|190655367|gb|EDV52610.1| GG13257 [Drosophila erecta]
Length = 468
Score = 83.6 bits (205), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 40/67 (59%), Positives = 49/67 (73%), Gaps = 2/67 (2%)
Query: 59 QDCLQGAHIGPCDPERTSMDQGGASTSDYAVDPTRASQARWDDASQVTIKVSTKPCPSCR 118
++CLQG HIG C PE T ++ +Y VDP RA++ARW++AS VTIKVSTKPCP CR
Sbjct: 369 RNCLQGYHIGECLPEGTGA--SAQNSCEYTVDPNRAAEARWEEASNVTIKVSTKPCPKCR 426
Query: 119 TATERAG 125
T TER G
Sbjct: 427 TPTERDG 433
>gi|391336215|ref|XP_003742477.1| PREDICTED: E3 ubiquitin-protein ligase parkin-like [Metaseiulus
occidentalis]
Length = 483
Score = 83.2 bits (204), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 47/130 (36%), Positives = 64/130 (49%), Gaps = 34/130 (26%)
Query: 1 MNEGEDGCKRIGCTE-----CGFVFCKDCLQGAHIGPCDPGRTSMDQGGASTSDYAVDPT 55
++E C ++ C+ CGFVFC+DCLQGAHIGPC
Sbjct: 350 LDETLSKCNKVTCSRIEGQGCGFVFCRDCLQGAHIGPC---------------------- 387
Query: 56 RASQDCLQGAHIGPCDPERTSMDQGGASTSDYAVDPTRASQARWDDASQVTIKVSTKPCP 115
Q + D + A + + VD RAS++RWD +S++TIK +TKPCP
Sbjct: 388 -------QEEDVAERDLTLAMQREDTAGGTLFMVDEDRASRSRWDKSSRITIKGTTKPCP 440
Query: 116 SCRTATERAG 125
CRT TER+G
Sbjct: 441 KCRTPTERSG 450
>gi|195017155|ref|XP_001984548.1| GH16528 [Drosophila grimshawi]
gi|193898030|gb|EDV96896.1| GH16528 [Drosophila grimshawi]
Length = 464
Score = 83.2 bits (204), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 42/68 (61%), Positives = 50/68 (73%), Gaps = 4/68 (5%)
Query: 59 QDCLQGAHIGPCDPERTSMDQGGASTS-DYAVDPTRASQARWDDASQVTIKVSTKPCPSC 117
++CLQG HIG C PE D A S +Y+VDP RA++ARW++AS VTIKVSTKPCP C
Sbjct: 365 RNCLQGYHIGECLPEG---DTASAQNSCEYSVDPNRAAEARWEEASNVTIKVSTKPCPKC 421
Query: 118 RTATERAG 125
RT TER G
Sbjct: 422 RTPTERDG 429
>gi|195379002|ref|XP_002048270.1| GJ11442 [Drosophila virilis]
gi|194155428|gb|EDW70612.1| GJ11442 [Drosophila virilis]
Length = 467
Score = 82.8 bits (203), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 42/68 (61%), Positives = 50/68 (73%), Gaps = 4/68 (5%)
Query: 59 QDCLQGAHIGPCDPERTSMDQGGASTS-DYAVDPTRASQARWDDASQVTIKVSTKPCPSC 117
++CLQG HIG C PE + G A S +Y VDP RA++ARW++AS VTIKVSTKPCP C
Sbjct: 368 RNCLQGYHIGECLPEGAT---GSAPNSCEYTVDPNRAAEARWEEASNVTIKVSTKPCPKC 424
Query: 118 RTATERAG 125
RT TER G
Sbjct: 425 RTPTERDG 432
>gi|194749075|ref|XP_001956965.1| GF10184 [Drosophila ananassae]
gi|190624247|gb|EDV39771.1| GF10184 [Drosophila ananassae]
Length = 468
Score = 82.4 bits (202), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 39/67 (58%), Positives = 49/67 (73%), Gaps = 2/67 (2%)
Query: 59 QDCLQGAHIGPCDPERTSMDQGGASTSDYAVDPTRASQARWDDASQVTIKVSTKPCPSCR 118
++CLQG HIG C PE + ++ +Y VDP RA++ARW++AS VTIKVSTKPCP CR
Sbjct: 369 RNCLQGYHIGECLPE--GVGSTSQNSCEYTVDPNRAAEARWEEASNVTIKVSTKPCPKCR 426
Query: 119 TATERAG 125
T TER G
Sbjct: 427 TPTERDG 433
>gi|157105280|ref|XP_001648798.1| parkin (ubiquitin E3 ligase prkn) [Aedes aegypti]
gi|108880142|gb|EAT44367.1| AAEL004267-PA [Aedes aegypti]
Length = 483
Score = 81.6 bits (200), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 49/119 (41%), Positives = 60/119 (50%), Gaps = 41/119 (34%)
Query: 8 CKRIGCTE-CGFVFCKDCLQGAHIGPCDPGRTSMDQGGASTSDYAVDPTRASQDCLQGAH 66
CKR+ C CGFVFC++CL QG H
Sbjct: 370 CKRVQCQNGCGFVFCRNCL-------------------------------------QGYH 392
Query: 67 IGPCDPERTSMDQGGASTSDYAVDPTRASQARWDDASQVTIKVSTKPCPSCRTATERAG 125
IG C T GA+ +Y +DP RAS+ARWD+AS++ IKV+TKPCP CRTATER G
Sbjct: 393 IGEC--LETPQPNAGAA-PNYTIDPLRASEARWDEASKIAIKVTTKPCPQCRTATERDG 448
>gi|193627226|ref|XP_001951752.1| PREDICTED: e3 ubiquitin-protein ligase parkin-like [Acyrthosiphon
pisum]
Length = 446
Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 39/67 (58%), Positives = 47/67 (70%), Gaps = 3/67 (4%)
Query: 59 QDCLQGAHIGPCDPERTSMDQGGASTSDYAVDPTRASQARWDDASQVTIKVSTKPCPSCR 118
+ CLQG HIG C P+ +Q + Y+VDP SQ++WDDAS+V IKVSTKPCP CR
Sbjct: 350 KKCLQGYHIGECLPKE---EQLIIDITGYSVDPKLVSQSKWDDASKVKIKVSTKPCPKCR 406
Query: 119 TATERAG 125
TATER G
Sbjct: 407 TATERDG 413
>gi|157105276|ref|XP_001648796.1| parkin (ubiquitin E3 ligase prkn) [Aedes aegypti]
gi|108880140|gb|EAT44365.1| AAEL004260-PA [Aedes aegypti]
Length = 230
Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 50/119 (42%), Positives = 60/119 (50%), Gaps = 41/119 (34%)
Query: 8 CKRIGCTE-CGFVFCKDCLQGAHIGPCDPGRTSMDQGGASTSDYAVDPTRASQDCLQGAH 66
CKRI C CGFVFC++CL QG H
Sbjct: 117 CKRIQCQNGCGFVFCRNCL-------------------------------------QGYH 139
Query: 67 IGPCDPERTSMDQGGASTSDYAVDPTRASQARWDDASQVTIKVSTKPCPSCRTATERAG 125
IG C T GA+ +Y +DP RAS+ARWD+AS++ IKV+TKPCP CRTATER G
Sbjct: 140 IGEC--LETPQPNAGAA-PNYTIDPLRASEARWDEASKIAIKVTTKPCPQCRTATERDG 195
>gi|198466616|ref|XP_001354063.2| GA10370 [Drosophila pseudoobscura pseudoobscura]
gi|198150683|gb|EAL29801.2| GA10370 [Drosophila pseudoobscura pseudoobscura]
Length = 471
Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 39/67 (58%), Positives = 49/67 (73%), Gaps = 2/67 (2%)
Query: 59 QDCLQGAHIGPCDPERTSMDQGGASTSDYAVDPTRASQARWDDASQVTIKVSTKPCPSCR 118
++CLQG HIG C P S ++ +YAVDP RA++ARW++A+ VTIKVSTKPCP CR
Sbjct: 372 RNCLQGYHIGDCLPNGGSA--SAPNSCEYAVDPNRAAEARWEEATNVTIKVSTKPCPKCR 429
Query: 119 TATERAG 125
T TER G
Sbjct: 430 TPTERDG 436
>gi|195428146|ref|XP_002062135.1| GK17374 [Drosophila willistoni]
gi|194158220|gb|EDW73121.1| GK17374 [Drosophila willistoni]
Length = 470
Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 38/67 (56%), Positives = 47/67 (70%), Gaps = 2/67 (2%)
Query: 59 QDCLQGAHIGPCDPERTSMDQGGASTSDYAVDPTRASQARWDDASQVTIKVSTKPCPSCR 118
++C QG HIG C PE ++ +Y VDP RA++ARWD+A+ VTIKVSTKPCP CR
Sbjct: 371 RNCRQGYHIGECLPE--GEQNSNQNSCEYTVDPNRAAEARWDEATNVTIKVSTKPCPKCR 428
Query: 119 TATERAG 125
T TER G
Sbjct: 429 TPTERDG 435
>gi|321475961|gb|EFX86922.1| hypothetical protein DAPPUDRAFT_221739 [Daphnia pulex]
Length = 481
Score = 80.1 bits (196), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 37/67 (55%), Positives = 47/67 (70%)
Query: 59 QDCLQGAHIGPCDPERTSMDQGGASTSDYAVDPTRASQARWDDASQVTIKVSTKPCPSCR 118
+DCLQG HI C + Q +T++Y VDP RA+QARWD S+VTI+V++KPCP CR
Sbjct: 380 RDCLQGYHIDECQTNGENNFQSMLTTTEYVVDPGRAAQARWDADSRVTIRVTSKPCPKCR 439
Query: 119 TATERAG 125
T TER G
Sbjct: 440 TPTERDG 446
>gi|170060706|ref|XP_001865920.1| parkin [Culex quinquefasciatus]
gi|167879101|gb|EDS42484.1| parkin [Culex quinquefasciatus]
Length = 499
Score = 79.7 bits (195), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 47/119 (39%), Positives = 59/119 (49%), Gaps = 41/119 (34%)
Query: 8 CKRIGCTE-CGFVFCKDCLQGAHIGPCDPGRTSMDQGGASTSDYAVDPTRASQDCLQGAH 66
C+R+ C CGFVFC+ CL QG H
Sbjct: 386 CRRVQCQNGCGFVFCRSCL-------------------------------------QGYH 408
Query: 67 IGPCDPERTSMDQGGASTSDYAVDPTRASQARWDDASQVTIKVSTKPCPSCRTATERAG 125
IG C T+ + S Y++DP RAS+ARWD+AS++ IKV+TKPCP CRTATER G
Sbjct: 409 IGECLETPTA---SLGTASGYSIDPLRASEARWDEASKIAIKVTTKPCPQCRTATERDG 464
>gi|189237080|ref|XP_969040.2| PREDICTED: similar to parkin (ubiquitin E3 ligase prkn) [Tribolium
castaneum]
Length = 440
Score = 79.3 bits (194), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 40/65 (61%), Positives = 44/65 (67%), Gaps = 2/65 (3%)
Query: 61 CLQGAHIGPCDPERTSMDQGGASTSDYAVDPTRASQARWDDASQVTIKVSTKPCPSCRTA 120
CLQG HIG C E D G Y VDPTRA++ARWD+AS+V IKV TKPCP CRT
Sbjct: 378 CLQGFHIGEC--EAPEGDVGAPGDCSYNVDPTRAAEARWDEASKVAIKVLTKPCPKCRTP 435
Query: 121 TERAG 125
TER G
Sbjct: 436 TERDG 440
>gi|312378343|gb|EFR24948.1| hypothetical protein AND_10149 [Anopheles darlingi]
Length = 602
Score = 79.3 bits (194), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 38/67 (56%), Positives = 46/67 (68%), Gaps = 2/67 (2%)
Query: 59 QDCLQGAHIGPCDPERTSMDQGGASTSDYAVDPTRASQARWDDASQVTIKVSTKPCPSCR 118
+ CLQG H+G C T G + YA+DP RAS ARWD+A+++ IKVSTKPCP CR
Sbjct: 503 RSCLQGYHLGECF--ETPTTPGSSGDHGYAIDPQRASDARWDEATKIVIKVSTKPCPKCR 560
Query: 119 TATERAG 125
TATER G
Sbjct: 561 TATERDG 567
>gi|270007424|gb|EFA03872.1| hypothetical protein TcasGA2_TC013995 [Tribolium castaneum]
Length = 425
Score = 79.0 bits (193), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 40/65 (61%), Positives = 44/65 (67%), Gaps = 2/65 (3%)
Query: 61 CLQGAHIGPCDPERTSMDQGGASTSDYAVDPTRASQARWDDASQVTIKVSTKPCPSCRTA 120
CLQG HIG C E D G Y VDPTRA++ARWD+AS+V IKV TKPCP CRT
Sbjct: 363 CLQGFHIGEC--EAPEGDVGAPGDCSYNVDPTRAAEARWDEASKVAIKVLTKPCPKCRTP 420
Query: 121 TERAG 125
TER G
Sbjct: 421 TERDG 425
>gi|322779034|gb|EFZ09433.1| hypothetical protein SINV_08036 [Solenopsis invicta]
Length = 469
Score = 78.6 bits (192), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 33/85 (38%), Positives = 55/85 (64%), Gaps = 1/85 (1%)
Query: 61 CLQGAHIGPCDPERTSMDQGGASTSDYAVDPTRASQARWDDASQVTIKVSTKPCPSCRTA 120
CLQG H+G C+ + S+ +Y++DP +A++A+W++AS+ TI++STKPCP CRT
Sbjct: 341 CLQGYHVGECESQMLETSTSVFSSKNYSIDPMKANEAKWEEASKKTIQISTKPCPKCRTP 400
Query: 121 TERAGK-GVYAYDLYPMFIPLVLGV 144
ER G +Y Y +++ V+ +
Sbjct: 401 IERDGHIKIYLYIYTIVYLQEVVCI 425
>gi|58388878|ref|XP_316606.2| AGAP006580-PA [Anopheles gambiae str. PEST]
gi|55239338|gb|EAA11344.2| AGAP006580-PA [Anopheles gambiae str. PEST]
Length = 489
Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 38/67 (56%), Positives = 47/67 (70%), Gaps = 2/67 (2%)
Query: 59 QDCLQGAHIGPCDPERTSMDQGGASTSDYAVDPTRASQARWDDASQVTIKVSTKPCPSCR 118
+ CLQG HIG C T G + YA+DP RAS+ARWD+A+++ IKV+TKPCP CR
Sbjct: 390 RSCLQGYHIGECFETPTPSTPG--NEQGYAIDPLRASEARWDEATKIAIKVTTKPCPQCR 447
Query: 119 TATERAG 125
TATER G
Sbjct: 448 TATERDG 454
>gi|242010580|ref|XP_002426043.1| Parkin, putative [Pediculus humanus corporis]
gi|212510053|gb|EEB13305.1| Parkin, putative [Pediculus humanus corporis]
Length = 461
Score = 78.2 bits (191), Expect = 1e-12, Method: Composition-based stats.
Identities = 45/124 (36%), Positives = 59/124 (47%), Gaps = 46/124 (37%)
Query: 5 EDGCKRIGCTECGFVFCKDCLQGAHIGPCDPGRTSMDQGGASTSDYAVDPTRA---SQDC 61
+ C R+ C+ CG+VFC CL+G H+G C ++PT SQ+C
Sbjct: 346 DQNCNRVQCS-CGYVFCGKCLEGFHLGEC------------------LNPTDVPFLSQNC 386
Query: 62 LQGAHIGPCDPERTSMDQGGASTSDYAVDPTRASQARWDDASQVTIKVSTKPCPSCRTAT 121
DY +DP + +ARWD+AS IKV TKPCP CRT+T
Sbjct: 387 ------------------------DYPLDPEKLEKARWDEASSTVIKVLTKPCPKCRTST 422
Query: 122 ERAG 125
ERAG
Sbjct: 423 ERAG 426
>gi|345482176|ref|XP_001605665.2| PREDICTED: E3 ubiquitin-protein ligase parkin-like [Nasonia
vitripennis]
Length = 474
Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 37/65 (56%), Positives = 46/65 (70%), Gaps = 1/65 (1%)
Query: 61 CLQGAHIGPCDPERTSMDQGGASTSDYAVDPTRASQARWDDASQVTIKVSTKPCPSCRTA 120
CLQG H+G C+ + T+ + A S Y VDP RA A+WD+AS+ TIK+STKPCP CRT
Sbjct: 376 CLQGFHVGDCENQPTASNPNSARDS-YVVDPLRAKDAKWDEASKKTIKISTKPCPKCRTP 434
Query: 121 TERAG 125
TER G
Sbjct: 435 TERDG 439
>gi|307179396|gb|EFN67726.1| E3 ubiquitin-protein ligase parkin [Camponotus floridanus]
Length = 498
Score = 76.6 bits (187), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 34/65 (52%), Positives = 46/65 (70%)
Query: 61 CLQGAHIGPCDPERTSMDQGGASTSDYAVDPTRASQARWDDASQVTIKVSTKPCPSCRTA 120
CLQG H+G C+ + + S++ Y+VDP +A+QA WD+AS+ TI+ STKPCP CRT
Sbjct: 399 CLQGYHVGECESQMSDASTSVFSSNYYSVDPLKANQATWDEASKKTIQTSTKPCPKCRTP 458
Query: 121 TERAG 125
TER G
Sbjct: 459 TERDG 463
>gi|383854676|ref|XP_003702846.1| PREDICTED: E3 ubiquitin-protein ligase parkin-like [Megachile
rotundata]
Length = 500
Score = 75.5 bits (184), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 46/121 (38%), Positives = 58/121 (47%), Gaps = 39/121 (32%)
Query: 6 DGCKRIGCTE-CGFVFCKDCLQGAHIGPCDPGRTSMDQGGASTSDYAVDPTRASQDCLQG 64
D C+RI C CG+VFC+ CL QG
Sbjct: 383 DECRRIQCIGGCGYVFCRRCL-------------------------------------QG 405
Query: 65 AHIGPCDPERTSMDQGGASTSDYAVDPTRASQARWDDASQVTIKVSTKPCPSCRTATERA 124
H+G C+ + S G S Y+VDP RA A+WD+AS+ TI++STKPCP CRT TER
Sbjct: 406 FHLGECELQ-PSESLNGPQKSGYSVDPERAKDAKWDEASKKTIQISTKPCPKCRTPTERD 464
Query: 125 G 125
G
Sbjct: 465 G 465
>gi|307199197|gb|EFN79884.1| E3 ubiquitin-protein ligase parkin [Harpegnathos saltator]
Length = 439
Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 35/65 (53%), Positives = 44/65 (67%)
Query: 61 CLQGAHIGPCDPERTSMDQGGASTSDYAVDPTRASQARWDDASQVTIKVSTKPCPSCRTA 120
CLQG H G C+ + +S +Y+VDP RA A+WD+AS+ TI+VSTKPCP CRT
Sbjct: 340 CLQGYHTGKCEFQPLGASTDVSSLRNYSVDPLRAKDAKWDEASRKTIQVSTKPCPLCRTP 399
Query: 121 TERAG 125
TER G
Sbjct: 400 TERDG 404
>gi|332027173|gb|EGI67265.1| E3 ubiquitin-protein ligase parkin [Acromyrmex echinatior]
Length = 486
Score = 74.3 bits (181), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 31/65 (47%), Positives = 47/65 (72%)
Query: 61 CLQGAHIGPCDPERTSMDQGGASTSDYAVDPTRASQARWDDASQVTIKVSTKPCPSCRTA 120
CLQG H+G C+ + + S+ +Y+VD ++A +A+W++AS+ TI++STKPCP CRT
Sbjct: 387 CLQGYHVGECESQTSETSTSVFSSRNYSVDLSKADEAKWEEASKKTIQISTKPCPKCRTP 446
Query: 121 TERAG 125
TER G
Sbjct: 447 TERDG 451
>gi|380028265|ref|XP_003697827.1| PREDICTED: E3 ubiquitin-protein ligase parkin-like [Apis florea]
Length = 498
Score = 73.2 bits (178), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 43/125 (34%), Positives = 59/125 (47%), Gaps = 39/125 (31%)
Query: 2 NEGEDGCKRIGCTE-CGFVFCKDCLQGAHIGPCDPGRTSMDQGGASTSDYAVDPTRASQD 60
++G D C++I C CG+VFC+ CL
Sbjct: 377 DDGSDKCRKIQCFGGCGYVFCRRCL----------------------------------- 401
Query: 61 CLQGAHIGPCDPERTSMDQGGASTSDYAVDPTRASQARWDDASQVTIKVSTKPCPSCRTA 120
QG H+G C+ + S S Y +DP + + A+WD+AS+ TIK+STKPCP CRT
Sbjct: 402 --QGFHLGECELQ-PSESSNALHKSGYLLDPQKVNDAKWDEASKKTIKISTKPCPKCRTP 458
Query: 121 TERAG 125
TER G
Sbjct: 459 TERDG 463
>gi|328786472|ref|XP_396426.4| PREDICTED: e3 ubiquitin-protein ligase parkin-like isoform 1 [Apis
mellifera]
Length = 498
Score = 72.8 bits (177), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 43/125 (34%), Positives = 59/125 (47%), Gaps = 39/125 (31%)
Query: 2 NEGEDGCKRIGCTE-CGFVFCKDCLQGAHIGPCDPGRTSMDQGGASTSDYAVDPTRASQD 60
++G D C++I C CG+VFC+ CL
Sbjct: 377 DDGSDKCRKIQCFGGCGYVFCRRCL----------------------------------- 401
Query: 61 CLQGAHIGPCDPERTSMDQGGASTSDYAVDPTRASQARWDDASQVTIKVSTKPCPSCRTA 120
QG H+G C+ + S S Y +DP + + A+WD+AS+ TIK+STKPCP CRT
Sbjct: 402 --QGFHLGECELQ-PSESSNALYKSGYLLDPQKVNDAKWDEASKKTIKISTKPCPKCRTP 458
Query: 121 TERAG 125
TER G
Sbjct: 459 TERDG 463
>gi|340724863|ref|XP_003400798.1| PREDICTED: e3 ubiquitin-protein ligase parkin-like [Bombus
terrestris]
Length = 498
Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 34/67 (50%), Positives = 44/67 (65%), Gaps = 1/67 (1%)
Query: 59 QDCLQGAHIGPCDPERTSMDQGGASTSDYAVDPTRASQARWDDASQVTIKVSTKPCPSCR 118
+ CLQG H+G C+ + S S Y+VDP RA+ A+WD+AS TI++ TKPCP CR
Sbjct: 398 RQCLQGYHLGECELQ-PSESLNTIHKSGYSVDPRRANDAKWDEASNKTIRILTKPCPKCR 456
Query: 119 TATERAG 125
T TER G
Sbjct: 457 TPTERDG 463
>gi|350421981|ref|XP_003493019.1| PREDICTED: E3 ubiquitin-protein ligase parkin-like [Bombus
impatiens]
Length = 498
Score = 70.9 bits (172), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 34/65 (52%), Positives = 43/65 (66%), Gaps = 1/65 (1%)
Query: 61 CLQGAHIGPCDPERTSMDQGGASTSDYAVDPTRASQARWDDASQVTIKVSTKPCPSCRTA 120
CLQG H+G C+ + S S Y+VDP RA+ A+WD+AS TI++ TKPCP CRT
Sbjct: 400 CLQGYHLGECELQ-PSESLNTIHRSGYSVDPRRANDAKWDEASNKTIRILTKPCPKCRTP 458
Query: 121 TERAG 125
TER G
Sbjct: 459 TERDG 463
>gi|427785027|gb|JAA57965.1| Putative parkin ubiquitin e3 ligase prkn parkin ubiquitin e3 ligase
prkn [Rhipicephalus pulchellus]
Length = 459
Score = 62.4 bits (150), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 40/122 (32%), Positives = 54/122 (44%), Gaps = 43/122 (35%)
Query: 5 EDGCKRIGCTE-CGFVFCKDCLQGAHIGPCDPGRTSMDQGGASTSDYAVDPTRASQDCLQ 63
E GC R+ C CGFVFC+ CLQ
Sbjct: 345 EPGCDRVKCDRGCGFVFCRLCLQ------------------------------------- 367
Query: 64 GAHIGPCDPERTSMDQGGASTSDYAVDPTRASQARWDDASQVTIKVSTKPCPSCRTATER 123
G H+GPC R + ++ A A A + WD+AS++T++ +TKPCP CRT TER
Sbjct: 368 GHHLGPCTSSREAGEERAAGPRFLA-----AQGSSWDEASRLTVQATTKPCPKCRTPTER 422
Query: 124 AG 125
+G
Sbjct: 423 SG 424
>gi|20385796|gb|AAM21456.1|AF381281_1 parkin isoform [Rattus norvegicus]
gi|149027492|gb|EDL83082.1| parkin, isoform CRA_d [Rattus norvegicus]
Length = 437
Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 29/67 (43%), Positives = 40/67 (59%), Gaps = 3/67 (4%)
Query: 59 QDCLQGAHIGPCDPERTSMDQGGASTSDYAVDPTRASQARWDDASQVTIKVSTKPCPSCR 118
+DC + H G CD + + GA++ Y VD A QARW++AS+ TIK +TKPCP C
Sbjct: 338 RDCKEAYHEGECD---SMFEASGATSQAYRVDQRAAEQARWEEASKETIKKTTKPCPRCN 394
Query: 119 TATERAG 125
E+ G
Sbjct: 395 VPIEKNG 401
>gi|284066980|gb|ADB77772.1| parkin variant SV5DEL [Rattus norvegicus]
Length = 437
Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 29/67 (43%), Positives = 40/67 (59%), Gaps = 3/67 (4%)
Query: 59 QDCLQGAHIGPCDPERTSMDQGGASTSDYAVDPTRASQARWDDASQVTIKVSTKPCPSCR 118
+DC + H G CD + + GA++ Y VD A QARW++AS+ TIK +TKPCP C
Sbjct: 338 RDCKEAYHEGECD---SMFEASGATSQAYRVDQRAAEQARWEEASKETIKKTTKPCPRCN 394
Query: 119 TATERAG 125
E+ G
Sbjct: 395 VPIEKNG 401
>gi|149027493|gb|EDL83083.1| parkin, isoform CRA_e [Rattus norvegicus]
Length = 460
Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 32/93 (34%), Positives = 49/93 (52%), Gaps = 6/93 (6%)
Query: 59 QDCLQGAHIGPCDPERTSMDQGGASTSDYAVDPTRASQARWDDASQVTIKVSTKPCPSCR 118
+DC + H G CD + + GA++ Y VD A QARW++AS+ TIK +TKPCP C
Sbjct: 366 RDCKEAYHEGECD---SMFEASGATSQAYRVDQRAAEQARWEEASKETIKKTTKPCPRCN 422
Query: 119 TATERAGKGVYAYDL---YPMFIPLVLGVSSGM 148
E+ +Y + + PL L + + +
Sbjct: 423 VPIEKNACPIYHVHTWCPWRVLKPLELELQTSV 455
>gi|20385804|gb|AAM21460.1|AF381285_1 parkin isoform [Rattus norvegicus]
Length = 177
Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 29/67 (43%), Positives = 40/67 (59%), Gaps = 3/67 (4%)
Query: 59 QDCLQGAHIGPCDPERTSMDQGGASTSDYAVDPTRASQARWDDASQVTIKVSTKPCPSCR 118
+DC + H G CD + + GA++ Y VD A QARW++AS+ TIK +TKPCP C
Sbjct: 78 RDCKEAYHEGECD---SMFEASGATSQAYRVDQRAAEQARWEEASKETIKKTTKPCPRCN 134
Query: 119 TATERAG 125
E+ G
Sbjct: 135 VPIEKNG 141
>gi|54036214|sp|Q9JK66.1|PRKN2_RAT RecName: Full=E3 ubiquitin-protein ligase parkin
gi|7717035|gb|AAF68666.1|AF257234_1 parkin [Rattus norvegicus]
gi|11527824|gb|AAG37013.1| parkin [Rattus norvegicus]
gi|149027489|gb|EDL83079.1| parkin, isoform CRA_b [Rattus norvegicus]
Length = 465
Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 29/67 (43%), Positives = 40/67 (59%), Gaps = 3/67 (4%)
Query: 59 QDCLQGAHIGPCDPERTSMDQGGASTSDYAVDPTRASQARWDDASQVTIKVSTKPCPSCR 118
+DC + H G CD + + GA++ Y VD A QARW++AS+ TIK +TKPCP C
Sbjct: 366 RDCKEAYHEGECD---SMFEASGATSQAYRVDQRAAEQARWEEASKETIKKTTKPCPRCN 422
Query: 119 TATERAG 125
E+ G
Sbjct: 423 VPIEKNG 429
>gi|18478866|gb|AAL73348.1|AF343574_1 parkin transcript variant 6 [Rattus norvegicus]
gi|20385794|gb|AAM21455.1|AF381280_1 parkin isoform [Rattus norvegicus]
gi|149027488|gb|EDL83078.1| parkin, isoform CRA_a [Rattus norvegicus]
gi|149027491|gb|EDL83081.1| parkin, isoform CRA_a [Rattus norvegicus]
Length = 274
Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 29/67 (43%), Positives = 40/67 (59%), Gaps = 3/67 (4%)
Query: 59 QDCLQGAHIGPCDPERTSMDQGGASTSDYAVDPTRASQARWDDASQVTIKVSTKPCPSCR 118
+DC + H G CD + + GA++ Y VD A QARW++AS+ TIK +TKPCP C
Sbjct: 175 RDCKEAYHEGECD---SMFEASGATSQAYRVDQRAAEQARWEEASKETIKKTTKPCPRCN 231
Query: 119 TATERAG 125
E+ G
Sbjct: 232 VPIEKNG 238
>gi|284810439|gb|ADB96019.1| parkin variant SV4bINS [Rattus norvegicus]
Length = 494
Score = 59.3 bits (142), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 29/67 (43%), Positives = 40/67 (59%), Gaps = 3/67 (4%)
Query: 59 QDCLQGAHIGPCDPERTSMDQGGASTSDYAVDPTRASQARWDDASQVTIKVSTKPCPSCR 118
+DC + H G CD + + GA++ Y VD A QARW++AS+ TIK +TKPCP C
Sbjct: 395 RDCKEAYHEGECD---SMFEASGATSQAYRVDQRAAEQARWEEASKETIKKTTKPCPRCN 451
Query: 119 TATERAG 125
E+ G
Sbjct: 452 VPIEKNG 458
>gi|148670130|gb|EDL02077.1| parkin [Mus musculus]
Length = 453
Score = 59.3 bits (142), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 29/67 (43%), Positives = 41/67 (61%), Gaps = 3/67 (4%)
Query: 59 QDCLQGAHIGPCDPERTSMDQGGASTSDYAVDPTRASQARWDDASQVTIKVSTKPCPSCR 118
+DC + H G CD + ++ GA++ Y VD A QARW++AS+ TIK +TKPCP C
Sbjct: 364 RDCKEAYHEGDCD---SLLEPSGATSQAYRVDKRAAEQARWEEASKETIKKTTKPCPRCN 420
Query: 119 TATERAG 125
E+ G
Sbjct: 421 VPIEKNG 427
>gi|20385788|gb|AAM21452.1|AF381277_1 parkin isoform [Rattus norvegicus]
gi|149027490|gb|EDL83080.1| parkin, isoform CRA_c [Rattus norvegicus]
Length = 489
Score = 59.3 bits (142), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 29/67 (43%), Positives = 40/67 (59%), Gaps = 3/67 (4%)
Query: 59 QDCLQGAHIGPCDPERTSMDQGGASTSDYAVDPTRASQARWDDASQVTIKVSTKPCPSCR 118
+DC + H G CD + + GA++ Y VD A QARW++AS+ TIK +TKPCP C
Sbjct: 390 RDCKEAYHEGECD---SMFEASGATSQAYRVDQRAAEQARWEEASKETIKKTTKPCPRCN 446
Query: 119 TATERAG 125
E+ G
Sbjct: 447 VPIEKNG 453
>gi|7001384|gb|AAF34874.1|AF168004_1 Parkin [Rattus norvegicus]
Length = 459
Score = 59.3 bits (142), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 29/67 (43%), Positives = 40/67 (59%), Gaps = 3/67 (4%)
Query: 59 QDCLQGAHIGPCDPERTSMDQGGASTSDYAVDPTRASQARWDDASQVTIKVSTKPCPSCR 118
+DC + H G CD + + GA++ Y VD A QARW++AS+ TIK +TKPCP C
Sbjct: 366 RDCKEAYHEGECD---SMFEASGATSQAYRVDQRAAEQARWEEASKETIKKTTKPCPRCN 422
Query: 119 TATERAG 125
E+ G
Sbjct: 423 VPIEKNG 429
>gi|20385790|gb|AAM21453.1|AF381278_1 parkin isoform [Rattus norvegicus]
Length = 446
Score = 59.3 bits (142), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 32/81 (39%), Positives = 45/81 (55%), Gaps = 6/81 (7%)
Query: 59 QDCLQGAHIGPCDPERTSMDQGGASTSDYAVDPTRASQARWDDASQVTIKVSTKPCPSCR 118
+DC + H G CD + + GA++ Y VD A QARW++AS+ TIK +TKPCP C
Sbjct: 366 RDCKEAYHEGECD---SMFEASGATSQAYRVDQRAAEQARWEEASKETIKKTTKPCPRCN 422
Query: 119 TATERAGKGVYAYDLYPMFIP 139
E+ + + Y M IP
Sbjct: 423 VPIEKNER---MHVQYTMCIP 440
>gi|301770565|ref|XP_002920702.1| PREDICTED: e3 ubiquitin-protein ligase parkin-like [Ailuropoda
melanoleuca]
Length = 498
Score = 59.3 bits (142), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 30/67 (44%), Positives = 39/67 (58%), Gaps = 3/67 (4%)
Query: 59 QDCLQGAHIGPCDPERTSMDQGGASTSDYAVDPTRASQARWDDASQVTIKVSTKPCPSCR 118
+DC + H G C T + GA+T Y VD A QARW++AS+ TIK +TKPCP C
Sbjct: 399 RDCKEAYHEGECG---TLFEASGAATQAYRVDEKAAEQARWEEASKETIKKTTKPCPRCH 455
Query: 119 TATERAG 125
E+ G
Sbjct: 456 VPVEKNG 462
>gi|11464987|ref|NP_064478.1| E3 ubiquitin-protein ligase parkin [Rattus norvegicus]
gi|7229097|dbj|BAA92431.1| Parkin [Rattus norvegicus]
Length = 465
Score = 59.3 bits (142), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 29/67 (43%), Positives = 40/67 (59%), Gaps = 3/67 (4%)
Query: 59 QDCLQGAHIGPCDPERTSMDQGGASTSDYAVDPTRASQARWDDASQVTIKVSTKPCPSCR 118
+DC + H G CD + + GA++ Y VD A QARW++AS+ TIK +TKPCP C
Sbjct: 366 RDCKEAYHEGECD---SMFEASGATSQAYRVDQRAAEQARWEEASKETIKKTTKPCPRCN 422
Query: 119 TATERAG 125
E+ G
Sbjct: 423 VPIEKNG 429
>gi|7710078|ref|NP_057903.1| E3 ubiquitin-protein ligase parkin [Mus musculus]
gi|54036247|sp|Q9WVS6.1|PRKN2_MOUSE RecName: Full=E3 ubiquitin-protein ligase parkin
gi|10179809|gb|AAG13890.1|AF250293_1 parkin [Mus musculus]
gi|5456930|dbj|BAA82404.1| parkin [Mus musculus]
gi|86577676|gb|AAI13205.1| Parkinson disease (autosomal recessive, juvenile) 2, parkin [Mus
musculus]
Length = 464
Score = 59.3 bits (142), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 29/67 (43%), Positives = 41/67 (61%), Gaps = 3/67 (4%)
Query: 59 QDCLQGAHIGPCDPERTSMDQGGASTSDYAVDPTRASQARWDDASQVTIKVSTKPCPSCR 118
+DC + H G CD + ++ GA++ Y VD A QARW++AS+ TIK +TKPCP C
Sbjct: 365 RDCKEAYHEGDCD---SLLEPSGATSQAYRVDKRAAEQARWEEASKETIKKTTKPCPRCN 421
Query: 119 TATERAG 125
E+ G
Sbjct: 422 VPIEKNG 428
>gi|354481863|ref|XP_003503120.1| PREDICTED: E3 ubiquitin-protein ligase parkin-like [Cricetulus
griseus]
Length = 410
Score = 59.3 bits (142), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 29/67 (43%), Positives = 40/67 (59%), Gaps = 3/67 (4%)
Query: 59 QDCLQGAHIGPCDPERTSMDQGGASTSDYAVDPTRASQARWDDASQVTIKVSTKPCPSCR 118
+DC + H G CD + + GA++ Y VD A QARW++AS+ TIK +TKPCP C
Sbjct: 311 RDCKEAYHEGACD---SLFEASGATSQAYRVDERAAEQARWEEASKETIKKTTKPCPRCN 367
Query: 119 TATERAG 125
E+ G
Sbjct: 368 VPVEKNG 374
>gi|194227491|ref|XP_001491087.2| PREDICTED: e3 ubiquitin-protein ligase parkin [Equus caballus]
Length = 485
Score = 58.9 bits (141), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 29/67 (43%), Positives = 39/67 (58%), Gaps = 3/67 (4%)
Query: 59 QDCLQGAHIGPCDPERTSMDQGGASTSDYAVDPTRASQARWDDASQVTIKVSTKPCPSCR 118
+DC + H G C+ ++ GA T Y VD A QARW++AS+ TIK +TKPCP C
Sbjct: 386 RDCKEAYHEGECN---ALLEASGAVTQAYRVDERAAEQARWEEASKETIKKTTKPCPRCH 442
Query: 119 TATERAG 125
E+ G
Sbjct: 443 VPVEKNG 449
>gi|345784480|ref|XP_855152.2| PREDICTED: E3 ubiquitin-protein ligase parkin [Canis lupus
familiaris]
Length = 464
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 37/126 (29%), Positives = 50/126 (39%), Gaps = 45/126 (35%)
Query: 5 EDGCKRIGC-----TECGFVFCKDCLQGAHIGPCDPGRTSMDQGGASTSDYAVDPTRASQ 59
E G +++ C CGF+FC++C + H G C
Sbjct: 343 EPGVRKVTCEGSNDLGCGFIFCRECKEEYHEGECS------------------------- 377
Query: 60 DCLQGAHIGPCDPERTSMDQGGASTSDYAVDPTRASQARWDDASQVTIKVSTKPCPSCRT 119
T + GA T Y VD A QARW++AS+ TIK +TKPCP C
Sbjct: 378 ---------------TLFEASGAVTQAYKVDEKAAEQARWEEASKETIKKTTKPCPRCHV 422
Query: 120 ATERAG 125
E+ G
Sbjct: 423 PVEKNG 428
>gi|426235262|ref|XP_004011603.1| PREDICTED: E3 ubiquitin-protein ligase parkin [Ovis aries]
Length = 525
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 38/110 (34%), Positives = 46/110 (41%), Gaps = 40/110 (36%)
Query: 16 CGFVFCKDCLQGAHIGPCDPGRTSMDQGGASTSDYAVDPTRASQDCLQGAHIGPCDPERT 75
CGFVFC+DC + H G C GA I
Sbjct: 420 CGFVFCRDCKEPYHEGDC------------------------------GAMI-------- 441
Query: 76 SMDQGGASTSDYAVDPTRASQARWDDASQVTIKVSTKPCPSCRTATERAG 125
+ GA T Y VD A QARW++AS+ TIK +TKPCP C E+ G
Sbjct: 442 --EASGAVTQAYRVDEKAAEQARWEEASKETIKKTTKPCPRCHVPVEKNG 489
>gi|47222378|emb|CAG05127.1| unnamed protein product [Tetraodon nigroviridis]
Length = 359
Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 38/123 (30%), Positives = 50/123 (40%), Gaps = 42/123 (34%)
Query: 6 DGCKRIGCTE---CGFVFCKDCLQGAHIGPCDPGRTSMDQGGASTSDYAVDPTRASQDCL 62
DG +R+ C CGFVFC++C +G H G C PT SQ
Sbjct: 222 DGARRVECDRQVGCGFVFCRNCREGYHEGVC--------------------PTTQSQT-- 259
Query: 63 QGAHIGPCDPERTSMDQGGASTSDYAVDPTRASQARWDDASQVTIKVSTKPCPSCRTATE 122
++ D+ VD +ARWD AS + ++ STKPCP C E
Sbjct: 260 -----------------TAEASQDFVVDEEATLRARWDQASLLLLQESTKPCPKCSVPVE 302
Query: 123 RAG 125
R G
Sbjct: 303 RNG 305
>gi|410960349|ref|XP_003986754.1| PREDICTED: E3 ubiquitin-protein ligase parkin [Felis catus]
Length = 464
Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/67 (43%), Positives = 38/67 (56%), Gaps = 3/67 (4%)
Query: 59 QDCLQGAHIGPCDPERTSMDQGGASTSDYAVDPTRASQARWDDASQVTIKVSTKPCPSCR 118
+DC + H G C T + GA + Y VD A QARW++AS+ TIK +TKPCP C
Sbjct: 365 RDCKEAYHEGECS---TLFEASGAVSQAYRVDEKAAEQARWEEASKETIKKTTKPCPRCH 421
Query: 119 TATERAG 125
E+ G
Sbjct: 422 VPVEKNG 428
>gi|261289803|ref|XP_002611763.1| hypothetical protein BRAFLDRAFT_99085 [Branchiostoma floridae]
gi|229297135|gb|EEN67773.1| hypothetical protein BRAFLDRAFT_99085 [Branchiostoma floridae]
Length = 414
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 42/67 (62%), Gaps = 3/67 (4%)
Query: 59 QDCLQGAHIGPCDPERTSMDQGGASTSDYAVDPTRASQARWDDASQVTIKVSTKPCPSCR 118
+DCL+ H G C P+ M+Q + + AVDP A ++RW+ S+ T++ +TKPCP+C+
Sbjct: 316 KDCLEPFHQGECRPQ---MEQLFGAENRIAVDPESALRSRWERESEETVRQTTKPCPNCK 372
Query: 119 TATERAG 125
E+ G
Sbjct: 373 APVEKNG 379
>gi|118088314|ref|XP_419615.2| PREDICTED: E3 ubiquitin-protein ligase parkin [Gallus gallus]
Length = 470
Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/110 (30%), Positives = 45/110 (40%), Gaps = 39/110 (35%)
Query: 16 CGFVFCKDCLQGAHIGPCDPGRTSMDQGGASTSDYAVDPTRASQDCLQGAHIGPCDPERT 75
CGFVFC++C + H G C ++
Sbjct: 365 CGFVFCRECKEEYHEGECSSFLST------------------------------------ 388
Query: 76 SMDQGGASTSDYAVDPTRASQARWDDASQVTIKVSTKPCPSCRTATERAG 125
QG + Y VD A QARW++AS+ TIK +TKPCP+C E+ G
Sbjct: 389 ---QGAVAQKGYVVDENAAMQARWEEASKETIKKTTKPCPNCHIPVEKNG 435
>gi|197102560|ref|NP_001125521.1| E3 ubiquitin-protein ligase parkin [Pongo abelii]
gi|55728340|emb|CAH90914.1| hypothetical protein [Pongo abelii]
Length = 316
Score = 55.8 bits (133), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 37/67 (55%), Gaps = 3/67 (4%)
Query: 59 QDCLQGAHIGPCDPERTSMDQGGASTSDYAVDPTRASQARWDDASQVTIKVSTKPCPSCR 118
++C + H G C + G +T Y VD A QARW++AS+ TIK +TKPCP C
Sbjct: 217 RECKEAYHEGECS---ALFEASGTTTQAYRVDERAAEQARWEEASKETIKKTTKPCPRCH 273
Query: 119 TATERAG 125
E+ G
Sbjct: 274 VPVEKNG 280
>gi|312261282|ref|NP_001185994.1| E3 ubiquitin-protein ligase parkin [Bos taurus]
Length = 488
Score = 55.8 bits (133), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 39/127 (30%), Positives = 52/127 (40%), Gaps = 45/127 (35%)
Query: 5 EDGCKRIGCTE-----CGFVFCKDCLQGAHIGPCDPGRTSMDQGGASTSDYAVDPTRASQ 59
E G +++ C CGFVFC+DC + H G C
Sbjct: 339 EPGQRKVSCEPGHGLGCGFVFCRDCKEPYHEGDC-------------------------- 372
Query: 60 DCLQGAHIGPCDPERTSMDQGGASTSDYAVDPTRASQARWDDASQVTIKVSTKPCPSCRT 119
GA I + G T Y V+ A QARW++AS+ TIK +TKPCP C
Sbjct: 373 ----GAVI----------EASGTVTQAYRVNEKAAEQARWEEASKETIKKTTKPCPRCHV 418
Query: 120 ATERAGK 126
E+ G+
Sbjct: 419 PVEKNGE 425
>gi|395839174|ref|XP_003792474.1| PREDICTED: E3 ubiquitin-protein ligase parkin [Otolemur garnettii]
Length = 646
Score = 55.5 bits (132), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 36/126 (28%), Positives = 47/126 (37%), Gaps = 45/126 (35%)
Query: 5 EDGCKRIGCTE-----CGFVFCKDCLQGAHIGPCDPGRTSMDQGGASTSDYAVDPTRASQ 59
E G +R+ C CGFVFC++C + H G C
Sbjct: 525 EPGQRRVACERDSGLGCGFVFCRECKEADHDGECS------------------------- 559
Query: 60 DCLQGAHIGPCDPERTSMDQGGASTSDYAVDPTRASQARWDDASQVTIKVSTKPCPSCRT 119
+ G Y VD A QARW++AS+ TIK +TKPCP C
Sbjct: 560 ---------------ALFEASGTVAQAYRVDERAAEQARWEEASKETIKQTTKPCPRCHV 604
Query: 120 ATERAG 125
E+ G
Sbjct: 605 PVEKNG 610
>gi|297292038|ref|XP_001099588.2| PREDICTED: e3 ubiquitin-protein ligase parkin-like isoform 1
[Macaca mulatta]
Length = 172
Score = 55.5 bits (132), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 37/67 (55%), Gaps = 3/67 (4%)
Query: 59 QDCLQGAHIGPCDPERTSMDQGGASTSDYAVDPTRASQARWDDASQVTIKVSTKPCPSCR 118
++C + H G C + G +T Y VD A QARW++AS+ TIK +TKPCP C
Sbjct: 73 RECKEAYHEGECS---ALFEASGTTTQAYRVDERAAEQARWEEASKETIKKTTKPCPRCH 129
Query: 119 TATERAG 125
E+ G
Sbjct: 130 VPVEKNG 136
>gi|348561213|ref|XP_003466407.1| PREDICTED: E3 ubiquitin-protein ligase parkin-like [Cavia
porcellus]
Length = 487
Score = 55.1 bits (131), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 40/126 (31%), Positives = 49/126 (38%), Gaps = 45/126 (35%)
Query: 5 EDGCKRIGCTE-----CGFVFCKDCLQGAHIGPCDPGRTSMDQGGASTSDYAVDPTRASQ 59
E G K+I C CGFVFC+DC + H G C S
Sbjct: 366 EQGQKKITCEAINNLGCGFVFCRDCKEAYHEGEC------------------------SA 401
Query: 60 DCLQGAHIGPCDPERTSMDQGGASTSDYAVDPTRASQARWDDASQVTIKVSTKPCPSCRT 119
C + G Y VD A QARW++AS+ TIK +TKPCP C
Sbjct: 402 LC----------------EASGPGIQPYRVDERAAEQARWEEASKETIKKTTKPCPRCSV 445
Query: 120 ATERAG 125
E+ G
Sbjct: 446 PVEKNG 451
>gi|344295153|ref|XP_003419278.1| PREDICTED: E3 ubiquitin-protein ligase parkin [Loxodonta africana]
Length = 484
Score = 55.1 bits (131), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 41/126 (32%), Positives = 49/126 (38%), Gaps = 45/126 (35%)
Query: 5 EDGCKRIGC-----TECGFVFCKDCLQGAHIGPCDPGRTSMDQGGASTSDYAVDPTRASQ 59
E G +RI C CG VFC+DC + H G C Q AS
Sbjct: 363 EAGMRRITCEGGNSLGCGLVFCRDCKEVYHEGECSA------QSEAS------------- 403
Query: 60 DCLQGAHIGPCDPERTSMDQGGASTSDYAVDPTRASQARWDDASQVTIKVSTKPCPSCRT 119
G T Y VD A QARW++AS+ TIK +TKPCP C
Sbjct: 404 ---------------------GMITQGYRVDEKAAEQARWEEASKETIKKTTKPCPRCHV 442
Query: 120 ATERAG 125
E+ G
Sbjct: 443 PVEKNG 448
>gi|402868690|ref|XP_003898426.1| PREDICTED: E3 ubiquitin-protein ligase parkin-like [Papio anubis]
Length = 120
Score = 55.1 bits (131), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 37/67 (55%), Gaps = 3/67 (4%)
Query: 59 QDCLQGAHIGPCDPERTSMDQGGASTSDYAVDPTRASQARWDDASQVTIKVSTKPCPSCR 118
++C + H G C + G +T Y VD A QARW++AS+ TIK +TKPCP C
Sbjct: 21 RECKEAYHEGECS---ALFEASGTTTQAYRVDERAAEQARWEEASKETIKKTTKPCPRCH 77
Query: 119 TATERAG 125
E+ G
Sbjct: 78 VPVEKNG 84
>gi|219986757|gb|ACL68652.1| parkin [Macaca fascicularis]
Length = 465
Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 37/67 (55%), Gaps = 3/67 (4%)
Query: 59 QDCLQGAHIGPCDPERTSMDQGGASTSDYAVDPTRASQARWDDASQVTIKVSTKPCPSCR 118
++C + H G C + G +T Y VD A QARW++AS+ TIK +TKPCP C
Sbjct: 366 RECKEAYHEGECS---ALFEASGTTTQAYRVDERAAEQARWEEASKETIKKTTKPCPRCH 422
Query: 119 TATERAG 125
E+ G
Sbjct: 423 VPVEKNG 429
>gi|355562188|gb|EHH18820.1| hypothetical protein EGK_15490, partial [Macaca mulatta]
gi|355749019|gb|EHH53502.1| hypothetical protein EGM_14152, partial [Macaca fascicularis]
Length = 463
Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 37/67 (55%), Gaps = 3/67 (4%)
Query: 59 QDCLQGAHIGPCDPERTSMDQGGASTSDYAVDPTRASQARWDDASQVTIKVSTKPCPSCR 118
++C + H G C + G +T Y VD A QARW++AS+ TIK +TKPCP C
Sbjct: 364 RECKEAYHEGECS---ALFEASGTTTQAYRVDERAAEQARWEEASKETIKKTTKPCPRCH 420
Query: 119 TATERAG 125
E+ G
Sbjct: 421 VPVEKNG 427
>gi|380794831|gb|AFE69291.1| E3 ubiquitin-protein ligase parkin isoform 2, partial [Macaca
mulatta]
Length = 150
Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 37/67 (55%), Gaps = 3/67 (4%)
Query: 59 QDCLQGAHIGPCDPERTSMDQGGASTSDYAVDPTRASQARWDDASQVTIKVSTKPCPSCR 118
++C + H G C + G +T Y VD A QARW++AS+ TIK +TKPCP C
Sbjct: 51 RECKEAYHEGECS---ALFEASGTTTQAYRVDERAAEQARWEEASKETIKKTTKPCPRCH 107
Query: 119 TATERAG 125
E+ G
Sbjct: 108 VPVEKNG 114
>gi|297292040|ref|XP_002804002.1| PREDICTED: e3 ubiquitin-protein ligase parkin-like isoform 2
[Macaca mulatta]
Length = 139
Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 37/67 (55%), Gaps = 3/67 (4%)
Query: 59 QDCLQGAHIGPCDPERTSMDQGGASTSDYAVDPTRASQARWDDASQVTIKVSTKPCPSCR 118
++C + H G C + G +T Y VD A QARW++AS+ TIK +TKPCP C
Sbjct: 40 RECKEAYHEGECS---ALFEASGTTTQAYRVDERAAEQARWEEASKETIKKTTKPCPRCH 96
Query: 119 TATERAG 125
E+ G
Sbjct: 97 VPVEKNG 103
>gi|334324292|ref|XP_001381497.2| PREDICTED: e3 ubiquitin-protein ligase parkin [Monodelphis
domestica]
Length = 475
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 39/67 (58%), Gaps = 3/67 (4%)
Query: 59 QDCLQGAHIGPCDPERTSMDQGGASTSDYAVDPTRASQARWDDASQVTIKVSTKPCPSCR 118
++C + H G C+ T + GA+ + VD A +ARW++AS+ TIK +TKPCP C
Sbjct: 376 RECKEEYHEGECN---TLFEASGAAAQAFMVDEQAAERARWEEASKETIKKTTKPCPRCH 432
Query: 119 TATERAG 125
E+ G
Sbjct: 433 IPVEKNG 439
>gi|169790973|ref|NP_054643.2| E3 ubiquitin-protein ligase parkin isoform 3 [Homo sapiens]
Length = 316
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 36/67 (53%), Gaps = 3/67 (4%)
Query: 59 QDCLQGAHIGPCDPERTSMDQGGASTSDYAVDPTRASQARWDDASQVTIKVSTKPCPSCR 118
++C + H G C + G +T Y VD A QARW+ AS+ TIK +TKPCP C
Sbjct: 217 RECKEAYHEGECS---AVFEASGTTTQAYRVDERAAEQARWEAASKETIKKTTKPCPRCH 273
Query: 119 TATERAG 125
E+ G
Sbjct: 274 VPVEKNG 280
>gi|62955239|ref|NP_001017635.1| E3 ubiquitin-protein ligase parkin [Danio rerio]
gi|62531267|gb|AAH93281.1| Parkinson disease (autosomal recessive, juvenile) 2, parkin [Danio
rerio]
gi|182890500|gb|AAI64537.1| Park2 protein [Danio rerio]
Length = 458
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 38/110 (34%), Positives = 45/110 (40%), Gaps = 39/110 (35%)
Query: 16 CGFVFCKDCLQGAHIGPCDPGRTSMDQGGASTSDYAVDPTRASQDCLQGAHIGPCDPERT 75
CGFVFC+DC + H GPC TS GA LQG
Sbjct: 353 CGFVFCRDCKEEFHEGPCR-HTTSTASAGA----------------LQG----------- 384
Query: 76 SMDQGGASTSDYAVDPTRASQARWDDASQVTIKVSTKPCPSCRTATERAG 125
Y VD A +ARW+ ASQ TI +T PCP C+ E+ G
Sbjct: 385 -----------YVVDEEAALRARWEQASQETITKTTHPCPKCQVPVEKNG 423
>gi|332825408|ref|XP_003311622.1| PREDICTED: E3 ubiquitin-protein ligase parkin [Pan troglodytes]
Length = 316
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 36/67 (53%), Gaps = 3/67 (4%)
Query: 59 QDCLQGAHIGPCDPERTSMDQGGASTSDYAVDPTRASQARWDDASQVTIKVSTKPCPSCR 118
++C + H G C + G +T Y VD A QARW+ AS+ TIK +TKPCP C
Sbjct: 217 RECKEAYHEGECS---ALFEASGTTTQAYRVDERAAEQARWEAASKETIKKTTKPCPRCH 273
Query: 119 TATERAG 125
E+ G
Sbjct: 274 VPVEKNG 280
>gi|20385806|gb|AAM21461.1|AF381286_1 parkin isoform [Homo sapiens]
Length = 177
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 36/67 (53%), Gaps = 3/67 (4%)
Query: 59 QDCLQGAHIGPCDPERTSMDQGGASTSDYAVDPTRASQARWDDASQVTIKVSTKPCPSCR 118
++C + H G C + G +T Y VD A QARW+ AS+ TIK +TKPCP C
Sbjct: 78 RECKEAYHEGECS---AVFEASGTTTQAYRVDERAAEQARWEAASKETIKKTTKPCPRCH 134
Query: 119 TATERAG 125
E+ G
Sbjct: 135 VPVEKNG 141
>gi|426355097|ref|XP_004044972.1| PREDICTED: E3 ubiquitin-protein ligase parkin-like [Gorilla gorilla
gorilla]
Length = 347
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 37/67 (55%), Gaps = 3/67 (4%)
Query: 59 QDCLQGAHIGPCDPERTSMDQGGASTSDYAVDPTRASQARWDDASQVTIKVSTKPCPSCR 118
++C + H G C + G +T Y VD A QARW++AS+ TIK +TKPCP C
Sbjct: 248 RECKEVYHEGECS---ALFEASGTTTQAYRVDERAAEQARWEEASKETIKKTTKPCPRCH 304
Query: 119 TATERAG 125
E+ G
Sbjct: 305 VPVEKNG 311
>gi|20385798|gb|AAM21457.1|AF381282_1 parkin isoform [Homo sapiens]
Length = 274
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 36/67 (53%), Gaps = 3/67 (4%)
Query: 59 QDCLQGAHIGPCDPERTSMDQGGASTSDYAVDPTRASQARWDDASQVTIKVSTKPCPSCR 118
++C + H G C + G +T Y VD A QARW+ AS+ TIK +TKPCP C
Sbjct: 175 RECKEAYHEGECS---AVFEASGTTTQAYRVDERAAEQARWEAASKETIKKTTKPCPRCH 231
Query: 119 TATERAG 125
E+ G
Sbjct: 232 VPVEKNG 238
>gi|169790971|ref|NP_054642.2| E3 ubiquitin-protein ligase parkin isoform 2 [Homo sapiens]
gi|119567959|gb|EAW47574.1| Parkinson disease (autosomal recessive, juvenile) 2, parkin,
isoform CRA_d [Homo sapiens]
gi|284468411|gb|ADB90270.1| parkin variant SV5DEL [Homo sapiens]
Length = 437
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 36/67 (53%), Gaps = 3/67 (4%)
Query: 59 QDCLQGAHIGPCDPERTSMDQGGASTSDYAVDPTRASQARWDDASQVTIKVSTKPCPSCR 118
++C + H G C + G +T Y VD A QARW+ AS+ TIK +TKPCP C
Sbjct: 338 RECKEAYHEGECS---AVFEASGTTTQAYRVDERAAEQARWEAASKETIKKTTKPCPRCH 394
Query: 119 TATERAG 125
E+ G
Sbjct: 395 VPVEKNG 401
>gi|284516986|gb|ADB91979.1| parkin variant SV5,9DEL [Homo sapiens]
Length = 387
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 36/67 (53%), Gaps = 3/67 (4%)
Query: 59 QDCLQGAHIGPCDPERTSMDQGGASTSDYAVDPTRASQARWDDASQVTIKVSTKPCPSCR 118
++C + H G C + G +T Y VD A QARW+ AS+ TIK +TKPCP C
Sbjct: 288 RECKEAYHEGECS---AVFEASGTTTQAYRVDERAAEQARWEAASKETIKKTTKPCPRCH 344
Query: 119 TATERAG 125
E+ G
Sbjct: 345 VPVEKNG 351
>gi|332825406|ref|XP_003311621.1| PREDICTED: E3 ubiquitin-protein ligase parkin [Pan troglodytes]
Length = 437
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 36/67 (53%), Gaps = 3/67 (4%)
Query: 59 QDCLQGAHIGPCDPERTSMDQGGASTSDYAVDPTRASQARWDDASQVTIKVSTKPCPSCR 118
++C + H G C + G +T Y VD A QARW+ AS+ TIK +TKPCP C
Sbjct: 338 RECKEAYHEGECS---ALFEASGTTTQAYRVDERAAEQARWEAASKETIKKTTKPCPRCH 394
Query: 119 TATERAG 125
E+ G
Sbjct: 395 VPVEKNG 401
>gi|440902216|gb|ELR53030.1| hypothetical protein M91_14086, partial [Bos grunniens mutus]
Length = 175
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/110 (30%), Positives = 43/110 (39%), Gaps = 40/110 (36%)
Query: 16 CGFVFCKDCLQGAHIGPCDPGRTSMDQGGASTSDYAVDPTRASQDCLQGAHIGPCDPERT 75
CGFVFC+DC + H G C
Sbjct: 70 CGFVFCRDCKEPYHEGDCG----------------------------------------A 89
Query: 76 SMDQGGASTSDYAVDPTRASQARWDDASQVTIKVSTKPCPSCRTATERAG 125
++ G T Y V+ A QARW++AS+ TIK +TKPCP C E+ G
Sbjct: 90 VIEASGTVTQAYRVNEKAAEQARWEEASKETIKKTTKPCPRCHVPVEKNG 139
>gi|3063388|dbj|BAA25751.1| Parkin [Homo sapiens]
Length = 465
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 36/67 (53%), Gaps = 3/67 (4%)
Query: 59 QDCLQGAHIGPCDPERTSMDQGGASTSDYAVDPTRASQARWDDASQVTIKVSTKPCPSCR 118
++C + H G C + G +T Y VD A QARW+ AS+ TIK +TKPCP C
Sbjct: 366 RECKEAYHEGECS---AVFEASGTTTQAYRVDERAAEQARWEAASKETIKKTTKPCPRCH 422
Query: 119 TATERAG 125
E+ G
Sbjct: 423 VPVEKNG 429
>gi|169790969|ref|NP_004553.2| E3 ubiquitin-protein ligase parkin isoform 1 [Homo sapiens]
gi|116242725|sp|O60260.2|PRKN2_HUMAN RecName: Full=E3 ubiquitin-protein ligase parkin; AltName:
Full=Parkinson juvenile disease protein 2;
Short=Parkinson disease protein 2
gi|119567958|gb|EAW47573.1| Parkinson disease (autosomal recessive, juvenile) 2, parkin,
isoform CRA_c [Homo sapiens]
gi|158258617|dbj|BAF85279.1| unnamed protein product [Homo sapiens]
gi|261859200|dbj|BAI46122.1| Parkinson disease (autosomal recessive, juvenile) 2, parkin
[synthetic construct]
Length = 465
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 36/67 (53%), Gaps = 3/67 (4%)
Query: 59 QDCLQGAHIGPCDPERTSMDQGGASTSDYAVDPTRASQARWDDASQVTIKVSTKPCPSCR 118
++C + H G C + G +T Y VD A QARW+ AS+ TIK +TKPCP C
Sbjct: 366 RECKEAYHEGECS---AVFEASGTTTQAYRVDERAAEQARWEAASKETIKKTTKPCPRCH 422
Query: 119 TATERAG 125
E+ G
Sbjct: 423 VPVEKNG 429
>gi|284468413|gb|ADB90271.1| parkin variant SV9DEL [Homo sapiens]
Length = 415
Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 36/67 (53%), Gaps = 3/67 (4%)
Query: 59 QDCLQGAHIGPCDPERTSMDQGGASTSDYAVDPTRASQARWDDASQVTIKVSTKPCPSCR 118
++C + H G C + G +T Y VD A QARW+ AS+ TIK +TKPCP C
Sbjct: 316 RECKEAYHEGECS---AVFEASGTTTQAYRVDERAAEQARWEAASKETIKKTTKPCPRCH 372
Query: 119 TATERAG 125
E+ G
Sbjct: 373 VPVEKNG 379
>gi|284066978|gb|ADB77771.1| parkin variant SV9bINS [Bos taurus]
Length = 521
Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 38/68 (55%), Gaps = 3/68 (4%)
Query: 59 QDCLQGAHIGPCDPERTSMDQGGASTSDYAVDPTRASQARWDDASQVTIKVSTKPCPSCR 118
+DC + H G C ++ G T Y V+ A QARW++AS+ TIK +TKPCP C
Sbjct: 394 RDCKEPYHEGDCG---AVIEASGTVTQAYRVNEKAAEQARWEEASKETIKKTTKPCPRCH 450
Query: 119 TATERAGK 126
E+ G+
Sbjct: 451 VPVEKNGE 458
>gi|121308970|dbj|BAF43729.1| parkin 2 [Homo sapiens]
Length = 465
Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 36/67 (53%), Gaps = 3/67 (4%)
Query: 59 QDCLQGAHIGPCDPERTSMDQGGASTSDYAVDPTRASQARWDDASQVTIKVSTKPCPSCR 118
++C + H G C + G +T Y VD A QARW+ AS+ TIK +TKPCP C
Sbjct: 366 RECKEAYHEGECS---AVFEASGTTTQAYRVDERAAEQARWEAASKETIKKTTKPCPRCH 422
Query: 119 TATERAG 125
E+ G
Sbjct: 423 VPVEKNG 429
>gi|432904392|ref|XP_004077308.1| PREDICTED: E3 ubiquitin-protein ligase parkin-like [Oryzias
latipes]
Length = 326
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 37/129 (28%), Positives = 53/129 (41%), Gaps = 42/129 (32%)
Query: 6 DGCKRIGCTE---CGFVFCKDCLQGAHIGPCDPGRTSMDQGGASTSDYAVDPTRASQDCL 62
D C+R+ C CGFVFC++C + H G C RA Q
Sbjct: 210 DPCRRVECERQLGCGFVFCRECREAYHQGEC----------------------RACQA-- 245
Query: 63 QGAHIGPCDPERTSMDQGGASTSDYAVDPTRASQARWDDASQVTIKVSTKPCPSCRTATE 122
P ++QG + VD + + RW+ ASQ I+ TKPCP+C E
Sbjct: 246 ---------PPMGDVEQG------FVVDEEASRRGRWEQASQRLIQEMTKPCPNCSVPVE 290
Query: 123 RAGKGVYAY 131
R G ++ +
Sbjct: 291 RNGGCMHMH 299
>gi|114610122|ref|XP_001153913.1| PREDICTED: E3 ubiquitin-protein ligase parkin isoform 5 [Pan
troglodytes]
Length = 465
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 36/67 (53%), Gaps = 3/67 (4%)
Query: 59 QDCLQGAHIGPCDPERTSMDQGGASTSDYAVDPTRASQARWDDASQVTIKVSTKPCPSCR 118
++C + H G C + G +T Y VD A QARW+ AS+ TIK +TKPCP C
Sbjct: 366 RECKEAYHEGECS---ALFEASGTTTQAYRVDERAAEQARWEAASKETIKKTTKPCPRCH 422
Query: 119 TATERAG 125
E+ G
Sbjct: 423 VPVEKNG 429
>gi|221048087|gb|ACL98151.1| parkin variant SV11bINS [Macaca fascicularis]
Length = 489
Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 36/65 (55%), Gaps = 3/65 (4%)
Query: 59 QDCLQGAHIGPCDPERTSMDQGGASTSDYAVDPTRASQARWDDASQVTIKVSTKPCPSCR 118
++C + H G C + G +T Y VD A QARW++AS+ TIK +TKPCP C
Sbjct: 365 RECKEAYHEGECS---ALFEASGTTTQAYRVDERAAEQARWEEASKETIKKTTKPCPRCH 421
Query: 119 TATER 123
E+
Sbjct: 422 VPVEK 426
>gi|194378190|dbj|BAG57845.1| unnamed protein product [Homo sapiens]
Length = 139
Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 36/67 (53%), Gaps = 3/67 (4%)
Query: 59 QDCLQGAHIGPCDPERTSMDQGGASTSDYAVDPTRASQARWDDASQVTIKVSTKPCPSCR 118
++C + H G C + G +T Y VD A QARW+ AS+ TIK +TKPCP C
Sbjct: 40 RECKEAYHEGECS---ALFEASGTTTQAYRVDERAAEQARWEAASKETIKKTTKPCPRCH 96
Query: 119 TATERAG 125
E+ G
Sbjct: 97 VPVEKNG 103
>gi|125630745|gb|ABN46990.1| parkin 2 [Homo sapiens]
Length = 465
Score = 53.1 bits (126), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 36/67 (53%), Gaps = 3/67 (4%)
Query: 59 QDCLQGAHIGPCDPERTSMDQGGASTSDYAVDPTRASQARWDDASQVTIKVSTKPCPSCR 118
++C + H G C + G +T Y VD A QARW+ AS+ TIK +TKPCP C
Sbjct: 366 RECKETYHEGECS---AVFEASGTTTQAYRVDERAAEQARWEAASKETIKKTTKPCPRCH 422
Query: 119 TATERAG 125
E+ G
Sbjct: 423 VPVEKNG 429
>gi|327262032|ref|XP_003215830.1| PREDICTED: e3 ubiquitin-protein ligase parkin-like [Anolis
carolinensis]
Length = 421
Score = 52.4 bits (124), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 33/110 (30%), Positives = 45/110 (40%), Gaps = 39/110 (35%)
Query: 16 CGFVFCKDCLQGAHIGPCDPGRTSMDQGGASTSDYAVDPTRASQDCLQGAHIGPCDPERT 75
CGFVFC++C + H G C T + G +T
Sbjct: 316 CGFVFCRECKEEYHEGEC---LTLFEAQGVTTQ--------------------------- 345
Query: 76 SMDQGGASTSDYAVDPTRASQARWDDASQVTIKVSTKPCPSCRTATERAG 125
+Y VD A Q+RW++AS+ TIK +TKPCP C E+ G
Sbjct: 346 ---------KEYKVDEHAAIQSRWEEASKETIKRTTKPCPRCHVPVEKDG 386
>gi|100913587|gb|ABF69685.1| parkin splice variant [Sus scrofa]
Length = 410
Score = 52.4 bits (124), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 36/129 (27%), Positives = 54/129 (41%), Gaps = 13/129 (10%)
Query: 7 GCKRIGCTECGFVFCKDCL---------QGAHIGPCDPG-RTSMDQGGASTSDYAVDPTR 56
C+ + C +C ++C L Q + PC G S+ + +
Sbjct: 249 NCRHVICLDCFHLYCVTRLNDRQFVHDPQLGYSLPCVAGCPNSLIKELHHFRILGEEQLV 308
Query: 57 ASQDCLQGAHIGPCDPERTSMDQGGASTSDYAVDPTRASQARWDDASQVTIKVSTKPCPS 116
+DC + H G C + A Y VD A QARW++AS+ TI+ +TKPCP
Sbjct: 309 FCRDCKESYHEGECS---ALFEASAAVAQAYRVDQKAAEQARWEEASKETIRKTTKPCPR 365
Query: 117 CRTATERAG 125
C E+ G
Sbjct: 366 CHVPVEKNG 374
>gi|113205856|ref|NP_001038068.1| E3 ubiquitin-protein ligase parkin [Sus scrofa]
gi|85718640|gb|ABC75246.1| parkin [Sus scrofa]
Length = 461
Score = 52.0 bits (123), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 35/67 (52%), Gaps = 3/67 (4%)
Query: 59 QDCLQGAHIGPCDPERTSMDQGGASTSDYAVDPTRASQARWDDASQVTIKVSTKPCPSCR 118
+DC + H G C + A Y VD A QARW++AS+ TI+ +TKPCP C
Sbjct: 362 RDCKESYHEGECS---ALFEASAAVAQAYRVDQKAAEQARWEEASKETIRKTTKPCPRCH 418
Query: 119 TATERAG 125
E+ G
Sbjct: 419 VPVEKNG 425
>gi|449497153|ref|XP_002187933.2| PREDICTED: E3 ubiquitin-protein ligase parkin [Taeniopygia guttata]
Length = 470
Score = 52.0 bits (123), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 38/67 (56%), Gaps = 2/67 (2%)
Query: 59 QDCLQGAHIGPCDPERTSMDQGGASTSDYAVDPTRASQARWDDASQVTIKVSTKPCPSCR 118
++C + H G C+ + G + Y VD A QARW++AS+ TIK +TKPCP+C
Sbjct: 371 RECKEEFHEGECNSLLSP--PGAMAQKGYVVDEHAAMQARWEEASRETIKKTTKPCPNCN 428
Query: 119 TATERAG 125
E+ G
Sbjct: 429 IPVEKNG 435
>gi|403285000|ref|XP_003933832.1| PREDICTED: E3 ubiquitin-protein ligase parkin [Saimiri boliviensis
boliviensis]
Length = 465
Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 35/67 (52%), Gaps = 3/67 (4%)
Query: 59 QDCLQGAHIGPCDPERTSMDQGGASTSDYAVDPTRASQARWDDASQVTIKVSTKPCPSCR 118
++C + H G C + G Y VD A QARW++AS+ TIK +TKPCP C
Sbjct: 366 RECKEAYHEGDCS---ALFEASGTIPQAYRVDERAAEQARWEEASKETIKKTTKPCPRCH 422
Query: 119 TATERAG 125
E+ G
Sbjct: 423 VPVEKNG 429
>gi|296199579|ref|XP_002747223.1| PREDICTED: E3 ubiquitin-protein ligase parkin [Callithrix jacchus]
Length = 495
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 35/67 (52%), Gaps = 3/67 (4%)
Query: 59 QDCLQGAHIGPCDPERTSMDQGGASTSDYAVDPTRASQARWDDASQVTIKVSTKPCPSCR 118
++C + H G C + G Y VD A QARW++AS+ TIK +TKPCP C
Sbjct: 396 RECKEAYHEGECS---ALSEASGTIPQAYRVDERAAEQARWEEASKETIKKTTKPCPRCH 452
Query: 119 TATERAG 125
E+ G
Sbjct: 453 VPVEKNG 459
>gi|291234047|ref|XP_002736961.1| PREDICTED: parkin splice-like [Saccoglossus kowalevskii]
Length = 390
Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 38/65 (58%), Gaps = 2/65 (3%)
Query: 59 QDCLQGAHIGPCDPERTSMDQGGASTSDYAVDPTRASQARWDDASQVTIKVSTKPCPSCR 118
+ CL H G C ++ GGA+ D +DP +A +ARW+ ++ TI+ +TKPCP C+
Sbjct: 291 RHCLLEYHSGEC-YQQLENPSGGATAGDL-IDPVQAERARWEREARETIRKTTKPCPKCK 348
Query: 119 TATER 123
ER
Sbjct: 349 VPVER 353
>gi|344249645|gb|EGW05749.1| E3 ubiquitin-protein ligase parkin [Cricetulus griseus]
Length = 126
Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 21/40 (52%), Positives = 27/40 (67%)
Query: 87 YAVDPTRASQARWDDASQVTIKVSTKPCPSCRTATERAGK 126
Y VD A QARW++AS+ TIK +TKPCP C E+ G+
Sbjct: 25 YRVDERAAEQARWEEASKETIKKTTKPCPRCNVPVEKNGR 64
>gi|410900994|ref|XP_003963981.1| PREDICTED: E3 ubiquitin-protein ligase parkin-like [Takifugu
rubripes]
Length = 454
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/123 (26%), Positives = 46/123 (37%), Gaps = 42/123 (34%)
Query: 6 DGCKRIGCTE---CGFVFCKDCLQGAHIGPCDPGRTSMDQGGASTSDYAVDPTRASQDCL 62
D +R+ C CGFVFC+ C +G H G C ++ G
Sbjct: 338 DDSRRVECDRQIGCGFVFCRICREGYHEGGCLATQSQTTAEG------------------ 379
Query: 63 QGAHIGPCDPERTSMDQGGASTSDYAVDPTRASQARWDDASQVTIKVSTKPCPSCRTATE 122
+ D+ VD + + RWD AS + ++ STKPCP C E
Sbjct: 380 ---------------------SQDFVVDEGASLRGRWDRASLLLLQESTKPCPKCSAPVE 418
Query: 123 RAG 125
R G
Sbjct: 419 RNG 421
>gi|45934578|gb|AAS79348.1| parkin [Takifugu rubripes]
Length = 482
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/123 (26%), Positives = 46/123 (37%), Gaps = 42/123 (34%)
Query: 6 DGCKRIGCTE---CGFVFCKDCLQGAHIGPCDPGRTSMDQGGASTSDYAVDPTRASQDCL 62
D +R+ C CGFVFC+ C +G H G C ++ G
Sbjct: 366 DDSRRVECDRQIGCGFVFCRICREGYHEGGCLATQSQTTAEG------------------ 407
Query: 63 QGAHIGPCDPERTSMDQGGASTSDYAVDPTRASQARWDDASQVTIKVSTKPCPSCRTATE 122
+ D+ VD + + RWD AS + ++ STKPCP C E
Sbjct: 408 ---------------------SQDFVVDEGASLRGRWDRASLLLLQESTKPCPKCSAPVE 446
Query: 123 RAG 125
R G
Sbjct: 447 RNG 449
>gi|281344101|gb|EFB19685.1| hypothetical protein PANDA_009468 [Ailuropoda melanoleuca]
Length = 105
Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/39 (53%), Positives = 26/39 (66%)
Query: 87 YAVDPTRASQARWDDASQVTIKVSTKPCPSCRTATERAG 125
Y VD A QARW++AS+ TIK +TKPCP C E+ G
Sbjct: 31 YRVDEKAAEQARWEEASKETIKKTTKPCPRCHVPVEKNG 69
>gi|431904579|gb|ELK09961.1| E3 ubiquitin-protein ligase parkin [Pteropus alecto]
Length = 128
Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/39 (51%), Positives = 26/39 (66%)
Query: 87 YAVDPTRASQARWDDASQVTIKVSTKPCPSCRTATERAG 125
Y VD A QARW+++S+ TIK +TKPCP C E+ G
Sbjct: 54 YRVDEKAAEQARWEESSKETIKKTTKPCPRCHVPVEKNG 92
>gi|196005961|ref|XP_002112847.1| hypothetical protein TRIADDRAFT_26044 [Trichoplax adhaerens]
gi|190584888|gb|EDV24957.1| hypothetical protein TRIADDRAFT_26044, partial [Trichoplax
adhaerens]
Length = 325
Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 36/67 (53%), Gaps = 1/67 (1%)
Query: 59 QDCLQGAHIGPCDPERTSMDQGGASTSDYAVDPTRASQARWDDASQVTIKVSTKPCPSCR 118
+ CL+ H G C+ S D T Y ++ A +ARW+ ++ TIK +KPCP C
Sbjct: 224 RRCLKVWHEGSCETYEIS-DNCHNYTQPYRINAADADKARWERKTKETIKKISKPCPKCN 282
Query: 119 TATERAG 125
T +++G
Sbjct: 283 TPIQKSG 289
>gi|395537360|ref|XP_003770671.1| PREDICTED: E3 ubiquitin-protein ligase parkin-like, partial
[Sarcophilus harrisii]
Length = 76
Score = 46.6 bits (109), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 20/39 (51%), Positives = 27/39 (69%)
Query: 87 YAVDPTRASQARWDDASQVTIKVSTKPCPSCRTATERAG 125
+AVD A +ARW++AS+ TIK +TKPCP C E+ G
Sbjct: 2 FAVDEQAAERARWEEASKETIKKTTKPCPRCHIPVEKNG 40
>gi|443702037|gb|ELU00199.1| hypothetical protein CAPTEDRAFT_220818 [Capitella teleta]
Length = 428
Score = 44.7 bits (104), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 27/38 (71%)
Query: 87 YAVDPTRASQARWDDASQVTIKVSTKPCPSCRTATERA 124
+ VDP R+ +ARWD A++ I +KPCP C++ TE++
Sbjct: 347 FTVDPMRSERARWDRAARQKILEISKPCPQCKSPTEKS 384
>gi|449678360|ref|XP_004209072.1| PREDICTED: E3 ubiquitin-protein ligase parkin-like [Hydra
magnipapillata]
Length = 149
Score = 42.7 bits (99), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 35/69 (50%), Gaps = 4/69 (5%)
Query: 59 QDCLQGAHIGPCDPERTSMDQGGASTSDYAVDPTRASQARWDDASQV--TIKVSTKPCPS 116
++CL H G C ++ T Y + A A+W D ++ TI +TKPCP
Sbjct: 48 RNCLLAYHDGECISSIDNLTTKSCYT--YEISQANAMHAKWRDEAKCRDTIAQTTKPCPR 105
Query: 117 CRTATERAG 125
CR+ TE++G
Sbjct: 106 CRSRTEKSG 114
>gi|390358846|ref|XP_798730.2| PREDICTED: E3 ubiquitin-protein ligase parkin-like
[Strongylocentrotus purpuratus]
Length = 465
Score = 42.7 bits (99), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 35/126 (27%), Positives = 49/126 (38%), Gaps = 45/126 (35%)
Query: 6 DGCKRIGCTE-----CGFVFCKDCLQGAHIGPCDPGRTSMDQGGASTSDYAVDPTRASQD 60
DG R+ C + CGFVFC++C + H G C
Sbjct: 339 DGESRVECLQEEGFGCGFVFCRNCHEAYHEGEC--------------------------- 371
Query: 61 CLQGAHIGPCDPERTSMDQGGASTSDYAVDPTRASQARWD-DASQVTIKVSTKPCPSCRT 119
G I + G S VD R +ARW+ + S+ TI ++KPCP+C+
Sbjct: 372 ---GQRIE---------EPHGPRGSGSEVDMERERRARWESEESKRTIGETSKPCPNCKV 419
Query: 120 ATERAG 125
ER G
Sbjct: 420 PVERNG 425
>gi|423094761|ref|ZP_17082557.1| glucose starvation-inducible protein B [Pseudomonas fluorescens
Q2-87]
gi|397888708|gb|EJL05191.1| glucose starvation-inducible protein B [Pseudomonas fluorescens
Q2-87]
Length = 128
Score = 42.0 bits (97), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 45/87 (51%), Gaps = 17/87 (19%)
Query: 28 AHIGPCDPGRTSMDQ----------GGASTSDYAVDPTRASQDCLQGAHIG----PCDPE 73
A+ G +PG + D+ G AS ++A DP RA++ +G H+ DPE
Sbjct: 5 ANTGNNNPGNFANDREKASEAGKKGGQASGGNFANDPERAAEAGRKGGHVSGGNFANDPE 64
Query: 74 RTSM--DQGG-ASTSDYAVDPTRASQA 97
R + +GG AS ++A DP RAS+A
Sbjct: 65 RAAEAGRKGGQASGGNFANDPERASEA 91
>gi|340380372|ref|XP_003388696.1| PREDICTED: e3 ubiquitin-protein ligase parkin-like [Amphimedon
queenslandica]
Length = 444
Score = 38.5 bits (88), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 31/123 (25%), Positives = 43/123 (34%), Gaps = 42/123 (34%)
Query: 5 EDGCKRIGCTECGFVFCKDCLQGAHIGPCDPGRTSMDQGGASTSDYAVDPTRASQDCLQG 64
ED R+ C C FC++C H G CD A P +A
Sbjct: 326 EDPGNRVTCPTCRHTFCRNCKNPYHRGNCD----------------AAPPIQA------- 362
Query: 65 AHIGPCDPERTSMDQGGASTSDYAVDPTRASQARWDDASQVTIK--VSTKPCPSCRTATE 122
+ + +D R ++RWD+AS I+ S KPCP C E
Sbjct: 363 -----------------LAGTGQQIDGERLRRSRWDEASDAFIRSNASIKPCPRCHVNIE 405
Query: 123 RAG 125
+ G
Sbjct: 406 KNG 408
>gi|348540104|ref|XP_003457528.1| PREDICTED: E3 ubiquitin-protein ligase parkin-like [Oreochromis
niloticus]
Length = 463
Score = 38.1 bits (87), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 30/129 (23%), Positives = 45/129 (34%), Gaps = 42/129 (32%)
Query: 6 DGCKRIGCTE---CGFVFCKDCLQGAHIGPCDPGRTSMDQGGASTSDYAVDPTRASQDCL 62
DG +++ C CGFVFC+ C H GPC PT
Sbjct: 347 DGSRKVECDRRLGCGFVFCRLCRGEYHEGPCQA--------------VTAPPT------- 385
Query: 63 QGAHIGPCDPERTSMDQGGASTSDYAVDPTRASQARWDDASQVTIKVSTKPCPSCRTATE 122
G + + V + + RW+ AS + I T+ CP+C E
Sbjct: 386 ------------------GEAAQGFVVGEEASLRGRWERASLLVIAELTRRCPTCSVPVE 427
Query: 123 RAGKGVYAY 131
R G ++ +
Sbjct: 428 RNGGCMHMH 436
>gi|332245345|ref|XP_003271821.1| PREDICTED: E3 ubiquitin-protein ligase parkin isoform 1 [Nomascus
leucogenys]
Length = 465
Score = 35.4 bits (80), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 20/39 (51%), Positives = 26/39 (66%)
Query: 87 YAVDPTRASQARWDDASQVTIKVSTKPCPSCRTATERAG 125
Y VD A QARW++A++ TIK +TKPCP C E+ G
Sbjct: 391 YRVDERAAEQARWEEATKETIKKTTKPCPRCHVPVEKNG 429
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.317 0.134 0.428
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,397,500,496
Number of Sequences: 23463169
Number of extensions: 87588823
Number of successful extensions: 232369
Number of sequences better than 100.0: 137
Number of HSP's better than 100.0 without gapping: 112
Number of HSP's successfully gapped in prelim test: 25
Number of HSP's that attempted gapping in prelim test: 232095
Number of HSP's gapped (non-prelim): 244
length of query: 149
length of database: 8,064,228,071
effective HSP length: 112
effective length of query: 37
effective length of database: 9,731,320,439
effective search space: 360058856243
effective search space used: 360058856243
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 71 (32.0 bits)