BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy15037
(149 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9JK66|PRKN2_RAT E3 ubiquitin-protein ligase parkin OS=Rattus norvegicus GN=Park2
PE=1 SV=1
Length = 465
Score = 59.7 bits (143), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 29/67 (43%), Positives = 40/67 (59%), Gaps = 3/67 (4%)
Query: 59 QDCLQGAHIGPCDPERTSMDQGGASTSDYAVDPTRASQARWDDASQVTIKVSTKPCPSCR 118
+DC + H G CD + + GA++ Y VD A QARW++AS+ TIK +TKPCP C
Sbjct: 366 RDCKEAYHEGECD---SMFEASGATSQAYRVDQRAAEQARWEEASKETIKKTTKPCPRCN 422
Query: 119 TATERAG 125
E+ G
Sbjct: 423 VPIEKNG 429
>sp|Q9WVS6|PRKN2_MOUSE E3 ubiquitin-protein ligase parkin OS=Mus musculus GN=Park2 PE=1
SV=1
Length = 464
Score = 59.3 bits (142), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 29/67 (43%), Positives = 41/67 (61%), Gaps = 3/67 (4%)
Query: 59 QDCLQGAHIGPCDPERTSMDQGGASTSDYAVDPTRASQARWDDASQVTIKVSTKPCPSCR 118
+DC + H G CD + ++ GA++ Y VD A QARW++AS+ TIK +TKPCP C
Sbjct: 365 RDCKEAYHEGDCD---SLLEPSGATSQAYRVDKRAAEQARWEEASKETIKKTTKPCPRCN 421
Query: 119 TATERAG 125
E+ G
Sbjct: 422 VPIEKNG 428
>sp|O60260|PRKN2_HUMAN E3 ubiquitin-protein ligase parkin OS=Homo sapiens GN=PARK2 PE=1
SV=2
Length = 465
Score = 53.9 bits (128), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 36/67 (53%), Gaps = 3/67 (4%)
Query: 59 QDCLQGAHIGPCDPERTSMDQGGASTSDYAVDPTRASQARWDDASQVTIKVSTKPCPSCR 118
++C + H G C + G +T Y VD A QARW+ AS+ TIK +TKPCP C
Sbjct: 366 RECKEAYHEGECS---AVFEASGTTTQAYRVDERAAEQARWEAASKETIKKTTKPCPRCH 422
Query: 119 TATERAG 125
E+ G
Sbjct: 423 VPVEKNG 429
>sp|O29844|GGGPS_ARCFU Geranylgeranylglyceryl phosphate synthase OS=Archaeoglobus fulgidus
(strain ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC
100126) GN=AF_0403 PE=1 SV=1
Length = 231
Score = 30.8 bits (68), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 36/85 (42%), Gaps = 6/85 (7%)
Query: 66 HIGPCDPERTSMDQGGASTSDYAVDPTRAS---QARWDDASQVTIKVSTKPCPSCRTATE 122
HI DP+RT+ D+ + +D D S ++ A + KVS P E
Sbjct: 8 HITKLDPDRTNTDEIIKAVADSGTDAVMISGTQNVTYEKARTLIEKVSQYGLP---IVVE 64
Query: 123 RAGKGVYAYDLYPMFIPLVLGVSSG 147
+ YD+ +F+P VL + G
Sbjct: 65 PSDPSNVVYDVDYLFVPTVLNSADG 89
>sp|Q9AV71|CESA7_ORYSJ Cellulose synthase A catalytic subunit 7 [UDP-forming] OS=Oryza
sativa subsp. japonica GN=CESA7 PE=2 SV=1
Length = 1063
Score = 30.8 bits (68), Expect = 3.1, Method: Composition-based stats.
Identities = 11/22 (50%), Positives = 13/22 (59%)
Query: 5 EDGCKRIGCTECGFVFCKDCLQ 26
EDG + C ECGF CK C +
Sbjct: 29 EDGKPFVACAECGFPVCKPCYE 50
>sp|D3ZHV2|MACF1_RAT Microtubule-actin cross-linking factor 1 OS=Rattus norvegicus
GN=Macf1 PE=1 SV=1
Length = 5430
Score = 30.8 bits (68), Expect = 3.2, Method: Composition-based stats.
Identities = 20/83 (24%), Positives = 35/83 (42%), Gaps = 3/83 (3%)
Query: 45 ASTSDYAVDPTRASQDCLQGAHIGPCDPERTSMDQGGASTSDYAVDPTRASQARWDDASQ 104
+S + A D + +S GA DP++++ G + S +RAS R DAS
Sbjct: 5320 SSRTSLAGDTSNSSSPASTGAKTNRADPKKSASRPGSRAGSRAG---SRASSRRGSDASD 5376
Query: 105 VTIKVSTKPCPSCRTATERAGKG 127
+ + C ++ G+G
Sbjct: 5377 FDLLETQSACSDTSESSAAGGQG 5399
>sp|Q9UPN3|MACF1_HUMAN Microtubule-actin cross-linking factor 1, isoforms 1/2/3/5 OS=Homo
sapiens GN=MACF1 PE=1 SV=4
Length = 7388
Score = 30.8 bits (68), Expect = 3.2, Method: Composition-based stats.
Identities = 20/83 (24%), Positives = 35/83 (42%), Gaps = 3/83 (3%)
Query: 45 ASTSDYAVDPTRASQDCLQGAHIGPCDPERTSMDQGGASTSDYAVDPTRASQARWDDASQ 104
+S + A D + +S GA DP++++ G + S +RAS R DAS
Sbjct: 7278 SSRTSLAGDTSNSSSPASTGAKTNRADPKKSASRPGSRAGSRAG---SRASSRRGSDASD 7334
Query: 105 VTIKVSTKPCPSCRTATERAGKG 127
+ + C ++ G+G
Sbjct: 7335 FDLLETQSACSDTSESSAAGGQG 7357
>sp|Q1AVG0|CPGS_RUBXD Cyclic 2,3-diphosphoglycerate synthetase OS=Rubrobacter
xylanophilus (strain DSM 9941 / NBRC 16129) GN=cpgS PE=3
SV=1
Length = 442
Score = 30.4 bits (67), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 30/68 (44%), Gaps = 8/68 (11%)
Query: 7 GCKRIGCTECGFVFCKDCLQGAHIGP-CDPGRTSMDQGGASTSDYAVDPTRASQDCLQGA 65
GC+R G G F + L+GA I D G T D GA+ VD + + GA
Sbjct: 208 GCRRCGGGLAGEPFVSNVLEGARIAAGLDTGITVFDGSGAAIPPVEVD----RRVLVAGA 263
Query: 66 HIGPCDPE 73
H DPE
Sbjct: 264 H---QDPE 268
>sp|Q9QXZ0|MACF1_MOUSE Microtubule-actin cross-linking factor 1 OS=Mus musculus GN=Macf1
PE=1 SV=2
Length = 7354
Score = 30.4 bits (67), Expect = 3.8, Method: Composition-based stats.
Identities = 20/83 (24%), Positives = 35/83 (42%), Gaps = 3/83 (3%)
Query: 45 ASTSDYAVDPTRASQDCLQGAHIGPCDPERTSMDQGGASTSDYAVDPTRASQARWDDASQ 104
+S + A D + +S GA DP++++ G + S +RAS R DAS
Sbjct: 7244 SSRTSLAGDTSNSSSPASTGAKANRADPKKSASRPGSRAGSRAG---SRASSRRGSDASD 7300
Query: 105 VTIKVSTKPCPSCRTATERAGKG 127
+ + C ++ G+G
Sbjct: 7301 FDLLETQSACSDTSESSAAGGQG 7323
>sp|Q6YVM4|CESA6_ORYSJ Probable cellulose synthase A catalytic subunit 6 [UDP-forming]
OS=Oryza sativa subsp. japonica GN=CESA6 PE=2 SV=1
Length = 1092
Score = 30.0 bits (66), Expect = 4.9, Method: Composition-based stats.
Identities = 10/24 (41%), Positives = 14/24 (58%)
Query: 1 MNEGEDGCKRIGCTECGFVFCKDC 24
+ EG DG + C EC F C++C
Sbjct: 49 VGEGPDGEPFVACNECAFPVCRNC 72
>sp|Q04638|ITT1_YEAST Translation termination inhibitor protein ITT1 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=ITT1 PE=1
SV=1
Length = 464
Score = 30.0 bits (66), Expect = 5.0, Method: Composition-based stats.
Identities = 11/19 (57%), Positives = 12/19 (63%)
Query: 11 IGCTECGFVFCKDCLQGAH 29
I C +C FVFC DCL H
Sbjct: 314 IQCQKCHFVFCFDCLHAWH 332
Score = 29.3 bits (64), Expect = 9.3, Method: Composition-based stats.
Identities = 13/33 (39%), Positives = 18/33 (54%), Gaps = 2/33 (6%)
Query: 3 EGEDGCKRIGCTECGFVFCKDCLQGAHIGPCDP 35
E +GC ++ C CG +FC C G + P DP
Sbjct: 410 ERSEGCNKMKCEVCGTLFCFIC--GVLLYPEDP 440
>sp|P15215|LAMC1_DROME Laminin subunit gamma-1 OS=Drosophila melanogaster GN=LanB2 PE=2
SV=2
Length = 1639
Score = 29.6 bits (65), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 24/54 (44%), Gaps = 13/54 (24%)
Query: 4 GEDGCKRIGC-------------TECGFVFCKDCLQGAHIGPCDPGRTSMDQGG 44
G GC++ GC TE G FCK+ ++G C PG ++D+
Sbjct: 454 GPHGCQQCGCDSGGSHQNTPACDTETGICFCKENVEGRRCNECKPGFFNLDKNN 507
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.134 0.428
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 56,930,303
Number of Sequences: 539616
Number of extensions: 2086552
Number of successful extensions: 5392
Number of sequences better than 100.0: 30
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 19
Number of HSP's that attempted gapping in prelim test: 5366
Number of HSP's gapped (non-prelim): 42
length of query: 149
length of database: 191,569,459
effective HSP length: 107
effective length of query: 42
effective length of database: 133,830,547
effective search space: 5620882974
effective search space used: 5620882974
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.8 bits)