RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy15037
(149 letters)
>d2ct7a1 g.44.1.4 (A:8-80) Ring finger protein 31 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 73
Score = 30.0 bits (67), Expect = 0.027
Identities = 6/24 (25%), Positives = 8/24 (33%)
Query: 3 EGEDGCKRIGCTECGFVFCKDCLQ 26
E C +C FC C +
Sbjct: 29 IYEREQLEATCPQCHQTFCVRCKR 52
>d1zbdb_ g.50.1.1 (B:) Effector domain of rabphilin-3a {Rat
(Rattus norvegicus) [TaxId: 10116]}
Length = 124
Score = 28.2 bits (62), Expect = 0.24
Identities = 6/31 (19%), Positives = 8/31 (25%)
Query: 7 GCKRIGCTECGFVFCKDCLQGAHIGPCDPGR 37
G + C +C C C P
Sbjct: 62 GSASVVCEDCKKNVCTKCGVETSNNRPHPVW 92
>d1wd2a_ g.44.1.1 (A:) Ariadne-1 protein homolog {Human (Homo
sapiens) [TaxId: 9606]}
Length = 60
Score = 26.8 bits (59), Expect = 0.32
Identities = 8/19 (42%), Positives = 10/19 (52%)
Query: 107 IKVSTKPCPSCRTATERAG 125
I +TK CP C E+ G
Sbjct: 2 IAANTKECPKCHVTIEKDG 20
>d1y02a2 g.50.1.1 (A:20-70) Rififylin (FYVE-RING finger protein
Sakura) {Human (Homo sapiens) [TaxId: 9606]}
Length = 51
Score = 24.2 bits (52), Expect = 1.9
Identities = 5/17 (29%), Positives = 8/17 (47%)
Query: 8 CKRIGCTECGFVFCKDC 24
++ C +C FC C
Sbjct: 14 ARKQTCLDCKKNFCMTC 30
>d1iyma_ g.44.1.1 (A:) EL5 RING-H2 domain {Rice (Oryza sativa)
[TaxId: 4530]}
Length = 55
Score = 24.1 bits (52), Expect = 2.4
Identities = 8/26 (30%), Positives = 12/26 (46%)
Query: 1 MNEGEDGCKRIGCTECGFVFCKDCLQ 26
+ E EDG + CG F +C+
Sbjct: 12 LAELEDGEEARFLPRCGHGFHAECVD 37
>d1vfya_ g.50.1.1 (A:) vps27p protein {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 67
Score = 24.2 bits (52), Expect = 2.6
Identities = 7/25 (28%), Positives = 12/25 (48%)
Query: 8 CKRIGCTECGFVFCKDCLQGAHIGP 32
++ C CG VFC++ + P
Sbjct: 19 NRKHHCRSCGGVFCQEHSSNSIPLP 43
>d2csva1 g.43.1.1 (A:8-66) Tripartite motif-containing protein 29
{Human (Homo sapiens) [TaxId: 9606]}
Length = 59
Score = 23.7 bits (51), Expect = 3.4
Identities = 4/19 (21%), Positives = 5/19 (26%)
Query: 13 CTECGFVFCKDCLQGAHIG 31
C C C+ H
Sbjct: 25 CQTDQTCICYLCMFQEHKN 43
>d1rmda2 g.44.1.1 (A:1-86) V(D)J recombination activating protein
1 (RAG1), dimerization domain {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 86
Score = 24.1 bits (52), Expect = 3.9
Identities = 5/21 (23%), Positives = 8/21 (38%)
Query: 6 DGCKRIGCTECGFVFCKDCLQ 26
T C +FC+ C+
Sbjct: 31 HILADPVETSCKHLFCRICIL 51
>d1k9xa_ d.92.1.5 (A:) Thermostable carboxypeptidase 1 {Archaeon
Pyrococcus furiosus [TaxId: 2261]}
Length = 497
Score = 24.9 bits (54), Expect = 5.3
Identities = 5/16 (31%), Positives = 8/16 (50%)
Query: 52 VDPTRASQDCLQGAHI 67
+ P + S+ LQ H
Sbjct: 395 IRPRKYSEGILQDIHW 410
>d1g25a_ g.44.1.1 (A:) TFIIH Mat1 subunit {Human (Homo sapiens)
[TaxId: 9606]}
Length = 65
Score = 23.6 bits (50), Expect = 5.4
Identities = 4/22 (18%), Positives = 9/22 (40%)
Query: 5 EDGCKRIGCTECGFVFCKDCLQ 26
+ ++ CG C+ C+
Sbjct: 15 RNPSLKLMVNVCGHTLCESCVD 36
>d1z60a1 g.49.1.2 (A:328-386) TFIIH p44 subunit cysteine-rich
domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 59
Score = 23.2 bits (50), Expect = 5.5
Identities = 7/12 (58%), Positives = 7/12 (58%)
Query: 13 CTECGFVFCKDC 24
C C VFC DC
Sbjct: 33 CAVCQNVFCVDC 44
>d2ggpb1 d.58.17.1 (B:1-72) Copper transporter domain ccc2a {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 72
Score = 23.5 bits (51), Expect = 5.6
Identities = 5/23 (21%), Positives = 8/23 (34%)
Query: 102 ASQVTIKVSTKPCPSCRTATERA 124
A +V + V C +C
Sbjct: 1 AREVILAVHGMTCSACTNTINTQ 23
>d1wfka_ g.50.1.1 (A:) Zinc finger FYVE domain containing protein
19 {Mouse (Mus musculus) [TaxId: 10090]}
Length = 88
Score = 23.9 bits (51), Expect = 5.8
Identities = 10/25 (40%), Positives = 12/25 (48%)
Query: 8 CKRIGCTECGFVFCKDCLQGAHIGP 32
K GC CG FC CL + + P
Sbjct: 23 KKEYGCKNCGRAFCNGCLSFSALVP 47
>d1dvpa2 g.50.1.1 (A:149-220) Hrs {Fruit fly (Drosophila
melanogaster) [TaxId: 7227]}
Length = 72
Score = 23.5 bits (50), Expect = 6.3
Identities = 8/25 (32%), Positives = 10/25 (40%)
Query: 8 CKRIGCTECGFVFCKDCLQGAHIGP 32
++ C CG VFC C P
Sbjct: 27 NRKHHCRNCGQVFCGQCTAKQCPLP 51
>d1weoa_ g.44.1.1 (A:) Cellulose synthase A catalytic subunit 7,
IRX3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Length = 93
Score = 23.6 bits (51), Expect = 6.4
Identities = 8/23 (34%), Positives = 12/23 (52%)
Query: 4 GEDGCKRIGCTECGFVFCKDCLQ 26
+G + C ECGF C+ C +
Sbjct: 29 TVEGDLFVACNECGFPACRPCYE 51
>d1joca1 g.50.1.1 (A:1348-1411) Eea1 {Human (Homo sapiens) [TaxId:
9606]}
Length = 64
Score = 23.1 bits (49), Expect = 7.2
Identities = 8/25 (32%), Positives = 13/25 (52%)
Query: 8 CKRIGCTECGFVFCKDCLQGAHIGP 32
+R C +CG +FC +C + P
Sbjct: 22 VRRHHCRQCGNIFCAECSAKNALTP 46
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.317 0.134 0.428
Gapped
Lambda K H
0.267 0.0671 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 538,912
Number of extensions: 21862
Number of successful extensions: 100
Number of sequences better than 10.0: 1
Number of HSP's gapped: 100
Number of HSP's successfully gapped: 33
Length of query: 149
Length of database: 2,407,596
Length adjustment: 77
Effective length of query: 72
Effective length of database: 1,350,386
Effective search space: 97227792
Effective search space used: 97227792
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 49 (22.8 bits)