BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy15038
(67 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9UPV9|TRAK1_HUMAN Trafficking kinesin-binding protein 1 OS=Homo sapiens GN=TRAK1
PE=1 SV=1
Length = 953
Score = 72.4 bits (176), Expect = 9e-13, Method: Composition-based stats.
Identities = 39/67 (58%), Positives = 44/67 (65%), Gaps = 3/67 (4%)
Query: 1 VCCGGDLPEVEIISLLEEQLPQYKLRADTLTEFIGYENQDWFVPCPLQADDPTALTPDQI 60
VC DLPEVEIISLLEEQLP YKLRADT+ GY++ DW + D LT +QI
Sbjct: 32 VCNSTDLPEVEIISLLEEQLPHYKLRADTI---YGYDHDDWLHTPLISPDANIDLTTEQI 88
Query: 61 RETLNYF 67
ETL YF
Sbjct: 89 EETLKYF 95
>sp|Q6PD31|TRAK1_MOUSE Trafficking kinesin-binding protein 1 OS=Mus musculus GN=Trak1
PE=1 SV=1
Length = 939
Score = 70.5 bits (171), Expect = 3e-12, Method: Composition-based stats.
Identities = 38/67 (56%), Positives = 44/67 (65%), Gaps = 3/67 (4%)
Query: 1 VCCGGDLPEVEIISLLEEQLPQYKLRADTLTEFIGYENQDWFVPCPLQADDPTALTPDQI 60
VC +LPEVEIISLLEEQLP YKLRADT+ GY++ DW + D LT +QI
Sbjct: 31 VCNSTNLPEVEIISLLEEQLPHYKLRADTI---YGYDHDDWLHTPLISPDANIDLTTEQI 87
Query: 61 RETLNYF 67
ETL YF
Sbjct: 88 EETLKYF 94
>sp|Q8R2H7|TRAK2_RAT Trafficking kinesin-binding protein 2 OS=Rattus norvegicus
GN=Trak2 PE=1 SV=2
Length = 913
Score = 65.9 bits (159), Expect = 7e-11, Method: Composition-based stats.
Identities = 36/66 (54%), Positives = 42/66 (63%), Gaps = 3/66 (4%)
Query: 1 VCCGGDLPEVEIISLLEEQLPQYKLRADTLTEFIGYENQDWFVPCPLQADDPTALTPDQI 60
VC DLPEVE+++LLEEQLPQYKLR D+L F+ YENQDW Q D L+P
Sbjct: 32 VCSNEDLPEVELVNLLEEQLPQYKLRVDSL--FL-YENQDWSQSSHQQQDASETLSPVLA 88
Query: 61 RETLNY 66
ET Y
Sbjct: 89 EETFRY 94
>sp|O60296|TRAK2_HUMAN Trafficking kinesin-binding protein 2 OS=Homo sapiens GN=TRAK2
PE=1 SV=2
Length = 914
Score = 62.8 bits (151), Expect = 7e-10, Method: Composition-based stats.
Identities = 35/66 (53%), Positives = 42/66 (63%), Gaps = 3/66 (4%)
Query: 1 VCCGGDLPEVEIISLLEEQLPQYKLRADTLTEFIGYENQDWFVPCPLQADDPTALTPDQI 60
VC DLPEVE++SLLEEQLPQY+L+ DTL F+ YENQDW + AL+P
Sbjct: 32 VCSNEDLPEVELVSLLEEQLPQYRLKVDTL--FL-YENQDWTQSPHQRQHASDALSPVLA 88
Query: 61 RETLNY 66
ET Y
Sbjct: 89 EETFRY 94
>sp|Q82T07|PHK_NITEU Probable phosphoketolase OS=Nitrosomonas europaea (strain ATCC
19718 / NBRC 14298) GN=NE2135 PE=3 SV=1
Length = 790
Score = 30.8 bits (68), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 11/37 (29%), Positives = 22/37 (59%), Gaps = 3/37 (8%)
Query: 1 VCCGGDLPEVEI---ISLLEEQLPQYKLRADTLTEFI 34
+ C GD+P +E+ +S+L E LP ++R + + +
Sbjct: 624 IACAGDVPTIEVLAAVSILREHLPDLRIRVINVVDLM 660
>sp|P25464|ACVS_ACRCH N-(5-amino-5-carboxypentanoyl)-L-cysteinyl-D-valine synthase
OS=Acremonium chrysogenum GN=PCBAB PE=1 SV=1
Length = 3712
Score = 29.3 bits (64), Expect = 7.2, Method: Composition-based stats.
Identities = 11/23 (47%), Positives = 18/23 (78%)
Query: 1 VCCGGDLPEVEIISLLEEQLPQY 23
VC G +PE +++S LE++LP+Y
Sbjct: 727 VCDEGHIPEGDLLSFLEKKLPRY 749
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.142 0.450
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 27,863,048
Number of Sequences: 539616
Number of extensions: 926962
Number of successful extensions: 2002
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 1994
Number of HSP's gapped (non-prelim): 7
length of query: 67
length of database: 191,569,459
effective HSP length: 39
effective length of query: 28
effective length of database: 170,524,435
effective search space: 4774684180
effective search space used: 4774684180
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)