Query psy15038
Match_columns 67
No_of_seqs 49 out of 51
Neff 3.6
Searched_HMMs 46136
Date Fri Aug 16 18:50:33 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15038.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/15038hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF04849 HAP1_N: HAP1 N-termin 99.6 3.1E-16 6.7E-21 118.1 2.1 47 17-67 1-47 (306)
2 KOG4360|consensus 98.5 2.9E-08 6.3E-13 80.4 0.0 45 20-67 1-47 (596)
3 COG5435 Uncharacterized conser 50.3 13 0.00027 26.2 1.9 18 11-28 56-73 (147)
4 cd08976 BaFpgNei_N_4 Uncharact 44.0 21 0.00046 22.4 2.1 22 6-27 2-24 (117)
5 PF08383 Maf_N: Maf N-terminal 44.0 19 0.00041 20.0 1.6 24 41-64 8-32 (35)
6 cd08975 BaFpgNei_N_3 Uncharact 40.3 26 0.00057 22.6 2.1 22 6-27 2-24 (117)
7 cd08966 EcFpg-like_N N-termina 31.8 24 0.00053 22.1 0.9 20 6-25 2-22 (120)
8 cd08972 PF_Nei_N N-terminal do 28.1 26 0.00056 23.3 0.6 22 6-27 3-25 (137)
9 cd03315 MLE_like Muconate lact 27.7 57 0.0012 22.8 2.3 22 9-30 115-137 (265)
10 PF04135 Nop10p: Nucleolar RNA 26.5 57 0.0012 19.2 1.8 29 18-51 9-39 (53)
11 PF04255 DUF433: Protein of un 26.3 32 0.00068 19.5 0.7 13 54-66 43-55 (56)
12 cd08967 MeNeil1_N N-terminal d 25.5 42 0.00091 22.4 1.2 22 6-27 3-25 (131)
13 PF08331 DUF1730: Domain of un 24.9 71 0.0015 19.0 2.1 19 11-29 58-78 (78)
14 PF02013 CBM_10: Cellulose or 23.1 28 0.0006 19.0 0.0 8 35-42 27-34 (36)
15 TIGR00256 D-tyrosyl-tRNA(Tyr) 22.7 52 0.0011 22.7 1.3 19 49-67 91-109 (145)
16 cd08973 BaFpgNei_N_1 Uncharact 22.6 72 0.0016 20.4 1.9 25 6-30 3-28 (122)
17 KOG3687|consensus 22.6 25 0.00054 32.4 -0.3 32 12-43 591-624 (1697)
18 PRK05273 D-tyrosyl-tRNA(Tyr) d 22.5 53 0.0012 22.8 1.3 20 48-67 90-109 (147)
19 cd08974 BaFpgNei_N_2 Uncharact 22.0 41 0.00088 21.0 0.6 23 6-28 3-25 (98)
20 COG2442 Uncharacterized conser 21.5 51 0.0011 20.5 1.0 13 54-66 55-67 (79)
21 COG1441 MenC O-succinylbenzoat 21.3 63 0.0014 25.2 1.6 18 12-29 146-163 (321)
22 cd00563 Dtyr_deacylase D-Tyros 20.9 58 0.0013 22.5 1.3 20 48-67 90-109 (145)
23 PF07981 Plasmod_MYXSPDY: Plas 20.9 50 0.0011 15.7 0.6 7 21-27 5-11 (17)
24 cd06562 GH20_HexA_HexB-like Be 20.1 56 0.0012 24.5 1.1 54 10-66 17-78 (348)
No 1
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=99.59 E-value=3.1e-16 Score=118.13 Aligned_cols=47 Identities=62% Similarity=1.028 Sum_probs=43.3
Q ss_pred HhhcCceeeeccccccccccccCcccccCCCCCCCCCCCCHHHHHHhhcCC
Q psy15038 17 EEQLPQYKLRADTLTEFIGYENQDWFVPCPLQADDPTALTPDQIRETLNYF 67 (67)
Q Consensus 17 eeqiP~YkLRaDsl~~~~gYenqDW~~~~p~~~~~~~~LSp~q~eETl~Yf 67 (67)
+||+|+||||||||| ||+|+||+ +|+..|+.+.+|||+|++||||||
T Consensus 1 ~e~~~~y~~r~d~l~---~~~~~dw~-~p~~~~~~~~~ls~~~~~~~l~y~ 47 (306)
T PF04849_consen 1 EEQLPPYKLRADTLY---GYDNQDWL-TPAAPPDRRPELSPEQIEETLRYF 47 (306)
T ss_pred CCCCCCCCccccccc---cccccccc-CCCCCCCCCCCCCHHHHHHHHHHH
Confidence 589999999999996 99999999 557788888999999999999998
No 2
>KOG4360|consensus
Probab=98.47 E-value=2.9e-08 Score=80.40 Aligned_cols=45 Identities=42% Similarity=0.586 Sum_probs=39.5
Q ss_pred cCceeeeccccccccccccCcccccCCCCCCCCCC--CCHHHHHHhhcCC
Q psy15038 20 LPQYKLRADTLTEFIGYENQDWFVPCPLQADDPTA--LTPDQIRETLNYF 67 (67)
Q Consensus 20 iP~YkLRaDsl~~~~gYenqDW~~~~p~~~~~~~~--LSp~q~eETl~Yf 67 (67)
+|+|||++|+.+ ||+|+||.+.|.-.+|...+ +|+.+++||++||
T Consensus 1 lpqykl~~~~~~---g~~h~~~~~~p~i~~d~~~a~s~s~~~a~et~~~~ 47 (596)
T KOG4360|consen 1 LPQYKLMRDTRL---GYCHADWRLGPGIPADATCAPSLSASPAEETSAYP 47 (596)
T ss_pred CCchhhccchhh---cccccchhhCCCCchhhccCCCCcccccccCccch
Confidence 699999999996 99999999875446677666 9999999999997
No 3
>COG5435 Uncharacterized conserved protein [Function unknown]
Probab=50.27 E-value=13 Score=26.18 Aligned_cols=18 Identities=39% Similarity=0.700 Sum_probs=15.5
Q ss_pred HHhHHHHhhcCceeeecc
Q psy15038 11 EIISLLEEQLPQYKLRAD 28 (67)
Q Consensus 11 EliSlleeqiP~YkLRaD 28 (67)
+.|++|.+|||.|+|..-
T Consensus 56 rql~~l~k~Lpgy~~~~~ 73 (147)
T COG5435 56 RQLALLRKQLPGYELHHR 73 (147)
T ss_pred HHHHHHHhhCCCeEEeec
Confidence 478999999999999763
No 4
>cd08976 BaFpgNei_N_4 Uncharacterized bacterial subgroup of the N-terminal domain of Fpg (formamidopyrimidine-DNA glycosylase, MutM)_Nei (endonuclease VIII) base-excision repair DNA glycosylases. This family is an uncharacterized bacterial subgroup of the FpgNei_N domain superfamily. DNA glycosylases maintain genome integrity by recognizing base lesions created by ionizing radiation, alkylating or oxidizing agents, and endogenous reactive oxygen species. They initiate the base-excision repair process, which is completed with the help of enzymes such as phosphodiesterases, AP endonucleases, DNA polymerases and DNA ligases. DNA glycosylases cleave the N-glycosyl bond between the sugar and the damaged base, creating an AP (apurinic/apyrimidinic) site. Most FpgNei DNA glycosylases use their N-terminal proline residue as the key catalytic nucleophile, and the reaction proceeds via a Schiff base intermediate. This N-terminal proline is conserved in this family. Escherichia coli Fpg prefers 8
Probab=44.00 E-value=21 Score=22.43 Aligned_cols=22 Identities=36% Similarity=0.505 Sum_probs=15.3
Q ss_pred CCChhHHh-HHHHhhcCceeeec
Q psy15038 6 DLPEVEII-SLLEEQLPQYKLRA 27 (67)
Q Consensus 6 dlpEvEli-SlleeqiP~YkLRa 27 (67)
.|||||.+ ..|+..+--.++..
T Consensus 2 ELPEVe~~~~~l~~~~~g~~I~~ 24 (117)
T cd08976 2 ELPEVEVQKQYLERTSLHRKIVE 24 (117)
T ss_pred CCcchHHHHHHHHHHhCCCEEEE
Confidence 68999955 55666777666654
No 5
>PF08383 Maf_N: Maf N-terminal region; InterPro: IPR013592 This region is found in various leucine zipper transcription factors of the Maf family. These are implicated in the regulation of insulin gene expression [], in erythroid differentiation [], and in differentiation of the neuroretina [].
Probab=43.96 E-value=19 Score=20.00 Aligned_cols=24 Identities=29% Similarity=0.552 Sum_probs=16.3
Q ss_pred ccccCCCC-CCCCCCCCHHHHHHhh
Q psy15038 41 WFVPCPLQ-ADDPTALTPDQIRETL 64 (67)
Q Consensus 41 W~~~~p~~-~~~~~~LSp~q~eETl 64 (67)
|..+.+.+ ......||||.+-|+|
T Consensus 8 Wm~~~~Qq~~pe~l~LtpEDAvEaL 32 (35)
T PF08383_consen 8 WMANYQQQMNPEALGLTPEDAVEAL 32 (35)
T ss_pred ccccchhhcChhhcCCCHHHHHHHH
Confidence 76443332 2346789999999987
No 6
>cd08975 BaFpgNei_N_3 Uncharacterized bacterial subgroup of the N-terminal domain of Fpg (formamidopyrimidine-DNA glycosylase, MutM)_Nei (endonuclease VIII) base-excision repair DNA glycosylases. This family is an uncharacterized bacterial subgroup of the FpgNei_N domain superfamily. DNA glycosylases maintain genome integrity by recognizing base lesions created by ionizing radiation, alkylating or oxidizing agents, and endogenous reactive oxygen species. They initiate the base-excision repair process, which is completed with the help of enzymes such as phosphodiesterases, AP endonucleases, DNA polymerases and DNA ligases. DNA glycosylases cleave the N-glycosyl bond between the sugar and the damaged base, creating an AP (apurinic/apyrimidinic) site. Most FpgNei DNA glycosylases use their N-terminal proline residue as the key catalytic nucleophile, and the reaction proceeds via a Schiff base intermediate. One exception is mouse Nei-like glycosylase 3 (Neil3) which forms a Schiff base int
Probab=40.25 E-value=26 Score=22.59 Aligned_cols=22 Identities=27% Similarity=0.477 Sum_probs=16.2
Q ss_pred CCChhHHh-HHHHhhcCceeeec
Q psy15038 6 DLPEVEII-SLLEEQLPQYKLRA 27 (67)
Q Consensus 6 dlpEvEli-SlleeqiP~YkLRa 27 (67)
.|||||.+ .-|+..+--.|+..
T Consensus 2 ELPEVEtv~r~L~~~l~G~~I~~ 24 (117)
T cd08975 2 ELPESATLSKQLNETLKGKRITD 24 (117)
T ss_pred CchhHHHHHHHHHHHcCCCEEeE
Confidence 58999955 45777787777665
No 7
>cd08966 EcFpg-like_N N-terminal domain of Escherichia coli Fpg1/MutM and related bacterial DNA glycosylases. This family contains the N-terminal domain of Escherichia coli Fpg1/MutM and related bacterial DNA glycosylases. It belongs to the FpgNei_N, [N-terminal domain of Fpg (formamidopyrimidine-DNA glycosylase, MutM)_Nei (endonuclease VIII)] domain superfamily. DNA glycosylases maintain genome integrity by recognizing base lesions created by ionizing radiation, alkylating or oxidizing agents, and endogenous reactive oxygen species. They initiate the base-excision repair process, which is completed with the help of enzymes such as phosphodiesterases, AP endonucleases, DNA polymerases and DNA ligases. DNA glycosylases cleave the N-glycosyl bond between the sugar and the damaged base, creating an AP (apurinic/apyrimidinic) site. Most FpgNei DNA glycosylases use their N-terminal proline residue as the key catalytic nucleophile, and the reaction proceeds via a Schiff base intermediate. Es
Probab=31.83 E-value=24 Score=22.08 Aligned_cols=20 Identities=35% Similarity=0.577 Sum_probs=12.5
Q ss_pred CCChhHHhHH-HHhhcCceee
Q psy15038 6 DLPEVEIISL-LEEQLPQYKL 25 (67)
Q Consensus 6 dlpEvEliSl-leeqiP~YkL 25 (67)
.|||||.++. |++.+=--++
T Consensus 2 ELPEve~~~~~l~~~l~G~~I 22 (120)
T cd08966 2 ELPEVETVRRGLAPHLVGRRI 22 (120)
T ss_pred CCccHHHHHHHHHHHhCCCEE
Confidence 6899996654 4455544444
No 8
>cd08972 PF_Nei_N N-terminal domain of the plant and fungal Nei and related proteins. This family contains the N-terminal domain of plant and Fungi Nei and related proteins. It belongs to the FpgNei_N, [N-terminal domain of Fpg (formamidopyrimidine-DNA glycosylase, MutM)_Nei (endonuclease VIII)] domain superfamily. DNA glycosylases maintain genome integrity by recognizing base lesions created by ionizing radiation, alkylating or oxidizing agents, and endogenous reactive oxygen species. They initiate the base-excision repair process, which is completed with the help of enzymes such as phosphodiesterases, AP endonucleases, DNA polymerases and DNA ligases. DNA glycosylases cleave the N-glycosyl bond between the sugar and the damaged base, creating an AP (apurinic/apyrimidinic) site. Most FpgNei DNA glycosylases use their N-terminal proline residue as the key catalytic nucleophile, and the reaction proceeds via a Schiff base intermediate. The plant and fungal FpgNei glycosylases prefer the
Probab=28.06 E-value=26 Score=23.28 Aligned_cols=22 Identities=41% Similarity=0.458 Sum_probs=14.4
Q ss_pred CCChhHHhHH-HHhhcCceeeec
Q psy15038 6 DLPEVEIISL-LEEQLPQYKLRA 27 (67)
Q Consensus 6 dlpEvEliSl-leeqiP~YkLRa 27 (67)
.|||||.++- |+..+---++..
T Consensus 3 ELPEVe~v~~~L~~~l~G~~I~~ 25 (137)
T cd08972 3 ELPEVERARRLLEEHCLGKKITK 25 (137)
T ss_pred chHHHHHHHHHHHHHhCCCEEEE
Confidence 6899996654 555666555544
No 9
>cd03315 MLE_like Muconate lactonizing enzyme (MLE) like subgroup of the enolase superfamily. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and residues that can function as general acid/base catalysts, a Lys-X-Lys motif and another conserved lysine. Despite these conserved residues, the members of the MLE subgroup, like muconate lactonizing enzyme, o-succinylbenzoate synthase (OSBS) and N-acylamino acid racemase (NAAAR), catalyze different reactions.
Probab=27.67 E-value=57 Score=22.82 Aligned_cols=22 Identities=27% Similarity=0.474 Sum_probs=19.1
Q ss_pred hhHHhHHHHhhcC-ceeeecccc
Q psy15038 9 EVEIISLLEEQLP-QYKLRADTL 30 (67)
Q Consensus 9 EvEliSlleeqiP-~YkLRaDsl 30 (67)
++|+|..+.|.+| ..+||+|.=
T Consensus 115 d~~~v~~vr~~~g~~~~l~vDan 137 (265)
T cd03315 115 DVAVVAALREAVGDDAELRVDAN 137 (265)
T ss_pred HHHHHHHHHHhcCCCCEEEEeCC
Confidence 5789999999996 899999974
No 10
>PF04135 Nop10p: Nucleolar RNA-binding protein, Nop10p family; InterPro: IPR007264 H/ACA ribonucleoprotein particles (RNPs) are a family of RNA pseudouridine synthases that specify modification sites through guide RNAs. More than 100 mammalian H/ACA RNAs form an equal number of ribonucleoproteins (RNPs) by associating with the same four core proteins: Cbf5, Gar1, Nhp2 and Nop10. The function of these H/ACA RNPs is essential for biogenesis of the ribosome, splicing of precursor mRNAs (pre-mRNAs), maintenance of telomeres and probably for additional cellular processes []. Recent crystal structures of archaeal H/ACA protein complexes show how the same four proteins accommodate >100 distinct but related H/ACA RNAs []. The complex contains a stable core composed of Cbf5 and Nop10, to which Gar1 and Nhp2 subsequently bind, the complex interacts with snoRNAs []. In eukaryotes Nop10 is a nucleolar protein that is specifically associated with H/ACA snoRNAs. It is essential for normal 18S rRNA production and rRNA pseudouridylation by the ribonucleoprotein particles containing H/ACA snoRNAs (H/ACA snoRNPs). Nop10 is probably necessary for the stability of these RNPs [].; PDB: 2RFK_B 3LWR_B 2HVY_C 3HAX_C 3MQK_B 3LWO_B 3LWV_B 3HAY_C 3HJY_B 2EY4_E ....
Probab=26.51 E-value=57 Score=19.20 Aligned_cols=29 Identities=21% Similarity=0.122 Sum_probs=19.7
Q ss_pred hhcCceeeeccccccccccccCcccccCCC--CCCC
Q psy15038 18 EQLPQYKLRADTLTEFIGYENQDWFVPCPL--QADD 51 (67)
Q Consensus 18 eqiP~YkLRaDsl~~~~gYenqDW~~~~p~--~~~~ 51 (67)
.+.=+|||+ |.. -.++..+..+-|+ .|++
T Consensus 9 ~~~~~YTLk-~~c----p~cG~~T~~ahPaRFSPdD 39 (53)
T PF04135_consen 9 PGCRVYTLK-DKC----PPCGGPTESAHPARFSPDD 39 (53)
T ss_dssp TTTCEEESS-SBB----TTTSSBSEESSSSSS-TTT
T ss_pred CCCCcEeCC-Ccc----CCCCCCCcCCcCCCCCCCC
Confidence 455589999 666 5688888866555 4554
No 11
>PF04255 DUF433: Protein of unknown function (DUF433); InterPro: IPR007367 This is a family of uncharacterised proteins.; PDB: 2GA1_B.
Probab=26.32 E-value=32 Score=19.49 Aligned_cols=13 Identities=46% Similarity=0.761 Sum_probs=9.8
Q ss_pred CCCHHHHHHhhcC
Q psy15038 54 ALTPDQIRETLNY 66 (67)
Q Consensus 54 ~LSp~q~eETl~Y 66 (67)
.||+++++++|.|
T Consensus 43 ~Lt~~~i~aAl~y 55 (56)
T PF04255_consen 43 SLTLEDIRAALAY 55 (56)
T ss_dssp T--HHHHHHHHHH
T ss_pred CCCHHHHHHHHHh
Confidence 5999999999987
No 12
>cd08967 MeNeil1_N N-terminal domain of metazoan Nei-like glycosylase 1 (NEIL1). This family contains the N-terminal domain of metazoan NEIL1. It belongs to the FpgNei_N, [N-terminal domain of Fpg (formamidopyrimidine-DNA glycosylase, MutM)_Nei (endonuclease VIII)] domain superfamily. DNA glycosylases maintain genome integrity by recognizing base lesions created by ionizing radiation, alkylating or oxidizing agents, and endogenous reactive oxygen species. They initiate the base-excision repair process, which is completed with the help of enzymes such as phosphodiesterases, AP endonucleases, DNA polymerases and DNA ligases. DNA glycosylases cleave the N-glycosyl bond between the sugar and the damaged base, creating an AP (apurinic/apyrimidinic) site. Most FpgNei DNA glycosylases use their N-terminal proline residue as the key catalytic nucleophile, and the reaction proceeds via a Schiff base intermediate. NEIL1 recognizes the oxidized pyrimidines 2,6-diamino-4-hydroxy-5-formamidopyrimidi
Probab=25.46 E-value=42 Score=22.43 Aligned_cols=22 Identities=18% Similarity=0.306 Sum_probs=14.1
Q ss_pred CCChhHHhHHH-HhhcCceeeec
Q psy15038 6 DLPEVEIISLL-EEQLPQYKLRA 27 (67)
Q Consensus 6 dlpEvEliSll-eeqiP~YkLRa 27 (67)
.|||||.++.- +..+=--++..
T Consensus 3 ELPEVe~vr~~L~~~~~g~~I~~ 25 (131)
T cd08967 3 EGPELHLASLFVNKMCKGLIFTG 25 (131)
T ss_pred CcHHHHHHHHHHHHhcCCCEEEE
Confidence 68999977754 44465555443
No 13
>PF08331 DUF1730: Domain of unknown function (DUF1730); InterPro: IPR013542 This domain of unknown function occurs in iron-sulphur cluster-binding proteins together with the 4Fe-4S binding domain (IPR001450 from INTERPRO).
Probab=24.90 E-value=71 Score=19.01 Aligned_cols=19 Identities=26% Similarity=0.525 Sum_probs=15.7
Q ss_pred HHhHHHHhhcCc--eeeeccc
Q psy15038 11 EIISLLEEQLPQ--YKLRADT 29 (67)
Q Consensus 11 EliSlleeqiP~--YkLRaDs 29 (67)
+|...|+++.|. ||.=+||
T Consensus 58 ~l~~~i~~~~~~~~~r~~VDT 78 (78)
T PF08331_consen 58 QLAEWIRELGPDFEYRIFVDT 78 (78)
T ss_pred HHHHHHHHHCCCCCeEEeecC
Confidence 478889999999 7877776
No 14
>PF02013 CBM_10: Cellulose or protein binding domain; InterPro: IPR002883 This domain is found in two distinct sets of proteins with different functions. Those found in aerobic bacteria bind cellulose (or other carbohydrates); but in anaerobic fungi they are protein binding domains, referred to as dockerin domains or docking domains. They are believed to be responsible for the assembly of a multiprotein cellulase/hemicellulase complex, similar to the cellulosome found in certain anaerobic bacteria. The recycling of photosynthetically fixed carbon in plant cell walls is a key microbial process. Enzyme systems that attack the plant cell wall contain noncatalytic carbohydrate-binding modules that mediate attachment to this composite structure and play a pivotal role in maximizing the hydrolytic process. In anaerobes, the degradation is carried out by a high molecular weight, multifunctional complex termed the cellulosome. This consists of a number of independent enzyme components, each of which contains a conserved 40-residue dockerin domain, which functions to bind the enzyme to a cohesin domain within the scaffoldin protein [, ]. In anaerobic bacteria that degrade plant cell walls, exemplified by Clostridium thermocellum, the dockerin domains of the catalytic polypeptides can bind equally well to any cohesin from the same organism. More recently, anaerobic fungi, typified by Piromyces equi, have been suggested to also synthesise a cellulosome complex, although the dockerin sequences of the bacterial and fungal enzymes are completely different []. For example, the fungal enzymes contain one, two or three copies of the dockerin sequence in tandem within the catalytic polypeptide. In contrast, all the C. thermocellum cellulosome catalytic components contain a single dockerin domain. The anaerobic bacterial dockerins are homologous to EF hands (calcium-binding motifs) and require calcium for activity whereas the fungal dockerin does not require calcium. Finally, the interaction between cohesin and dockerin appears to be species specific in bacteria, there is almost no species specificity of binding within fungal species and no identified sites that distinguish different species. The structure of dockerin from P. equi contains two helical stretches and four short beta-strands which form an antiparallel sheet structure adjacent to an additional short twisted parallel strand. The N- and C-termini are adjacent to each other. Aerobic bacteria contain related regions, however these appear to function as cellulose/carbohydrate binding domains.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 2J4M_A 2J4N_A 1E8R_A 1QLD_A 1E8P_A 1E8Q_A.
Probab=23.09 E-value=28 Score=19.04 Aligned_cols=8 Identities=63% Similarity=1.248 Sum_probs=6.6
Q ss_pred ccccCccc
Q psy15038 35 GYENQDWF 42 (67)
Q Consensus 35 gYenqDW~ 42 (67)
|+||.+|-
T Consensus 27 GvEN~~wC 34 (36)
T PF02013_consen 27 GVENGDWC 34 (36)
T ss_dssp EEETTEEE
T ss_pred eeECCceE
Confidence 78888885
No 15
>TIGR00256 D-tyrosyl-tRNA(Tyr) deacylase. This homodimeric enzyme appears able to cleave any D-amino acid (and glycine, which does not have distinct D/L forms) from charged tRNA. The name reflects characterization with respect to D-Tyr on tRNA(Tyr) as established in the literature, but substrate specificity seems much broader.
Probab=22.65 E-value=52 Score=22.73 Aligned_cols=19 Identities=26% Similarity=0.510 Sum_probs=14.3
Q ss_pred CCCCCCCCHHHHHHhhcCC
Q psy15038 49 ADDPTALTPDQIRETLNYF 67 (67)
Q Consensus 49 ~~~~~~LSp~q~eETl~Yf 67 (67)
|+=+.+.+|+.+++-+.+|
T Consensus 91 PsF~~a~~~~~A~~ly~~f 109 (145)
T TIGR00256 91 PSFSKGASPDRAEELYEYF 109 (145)
T ss_pred CCccccCCHHHHHHHHHHH
Confidence 3445688999999988775
No 16
>cd08973 BaFpgNei_N_1 Uncharacterized bacterial subgroup of the N-terminal domain of Fpg (formamidopyrimidine-DNA glycosylase, MutM)_Nei (endonuclease VIII) base-excision repair DNA glycosylases. This family is an uncharacterized bacterial subgroup of the FpgNei_N domain superfamily. DNA glycosylases maintain genome integrity by recognizing base lesions created by ionizing radiation, alkylating or oxidizing agents, and endogenous reactive oxygen species. They initiate the base-excision repair process, which is completed with the help of enzymes such as phosphodiesterases, AP endonucleases, DNA polymerases and DNA ligases. DNA glycosylases cleave the N-glycosyl bond between the sugar and the damaged base, creating an AP (apurinic/apyrimidinic) site. Most FpgNei DNA glycosylases use their N-terminal proline residue as the key catalytic nucleophile, and the reaction proceeds via a Schiff base intermediate. This N-terminal proline is conserved in this family. Escherichia coli Fpg prefers 8
Probab=22.62 E-value=72 Score=20.35 Aligned_cols=25 Identities=36% Similarity=0.521 Sum_probs=17.4
Q ss_pred CCChhHHhH-HHHhhcCceeeecccc
Q psy15038 6 DLPEVEIIS-LLEEQLPQYKLRADTL 30 (67)
Q Consensus 6 dlpEvEliS-lleeqiP~YkLRaDsl 30 (67)
.+||||.++ .|++++---++..=.+
T Consensus 3 ELPEve~~~~~L~~~l~Gk~I~~v~~ 28 (122)
T cd08973 3 ELPEVEVYAENLERRLTGKTITRVEL 28 (122)
T ss_pred ChHHHHHHHHHHHHhcCCCEEEEEEE
Confidence 589999655 5567787777765444
No 17
>KOG3687|consensus
Probab=22.58 E-value=25 Score=32.38 Aligned_cols=32 Identities=34% Similarity=0.201 Sum_probs=23.2
Q ss_pred HhHHHHhhcC--ceeeeccccccccccccCcccc
Q psy15038 12 IISLLEEQLP--QYKLRADTLTEFIGYENQDWFV 43 (67)
Q Consensus 12 liSlleeqiP--~YkLRaDsl~~~~gYenqDW~~ 43 (67)
++|-+.=|+= .++||||++|....-+|+||.+
T Consensus 591 ~~s~ir~~~f~~l~llRa~~~Y~lg~Pcn~~~Vv 624 (1697)
T KOG3687|consen 591 IASSIRLQAFDFLFLLRADSLYRLGLPCNKDGVV 624 (1697)
T ss_pred hhhHHHHHHHHHHHHHhhcccceecccCCCccEE
Confidence 4444433333 4579999999998889999984
No 18
>PRK05273 D-tyrosyl-tRNA(Tyr) deacylase; Provisional
Probab=22.53 E-value=53 Score=22.77 Aligned_cols=20 Identities=20% Similarity=0.449 Sum_probs=14.8
Q ss_pred CCCCCCCCCHHHHHHhhcCC
Q psy15038 48 QADDPTALTPDQIRETLNYF 67 (67)
Q Consensus 48 ~~~~~~~LSp~q~eETl~Yf 67 (67)
.|+=+.+.+|+.+++-+.+|
T Consensus 90 rP~F~~a~~~~~A~~ly~~f 109 (147)
T PRK05273 90 RPSFSAAAPPEEAEPLYDYF 109 (147)
T ss_pred CCCccccCCHHHHHHHHHHH
Confidence 34445788999999887765
No 19
>cd08974 BaFpgNei_N_2 Uncharacterized bacterial subgroup of the N-terminal domain of Fpg (formamidopyrimidine-DNA glycosylase, MutM)_Nei (endonuclease VIII) base-excision repair DNA glycosylases. This family is an uncharacterized bacterial subgroup of the FpgNei_N domain superfamily. DNA glycosylases maintain genome integrity by recognizing base lesions created by ionizing radiation, alkylating or oxidizing agents, and endogenous reactive oxygen species. They initiate the base-excision repair process, which is completed with the help of enzymes such as phosphodiesterases, AP endonucleases, DNA polymerases and DNA ligases. DNA glycosylases cleave the N-glycosyl bond between the sugar and the damaged base, creating an AP (apurinic/apyrimidinic) site. Most FpgNei DNA glycosylases use their N-terminal proline residue as the key catalytic nucleophile, and the reaction proceeds via a Schiff base intermediate. This N-terminal proline is conserved in this family. Escherichia coli Fpg prefers 8
Probab=22.04 E-value=41 Score=21.05 Aligned_cols=23 Identities=9% Similarity=0.104 Sum_probs=14.6
Q ss_pred CCChhHHhHHHHhhcCceeeecc
Q psy15038 6 DLPEVEIISLLEEQLPQYKLRAD 28 (67)
Q Consensus 6 dlpEvEliSlleeqiP~YkLRaD 28 (67)
++||||.+.---+.+-.-++..-
T Consensus 3 ELPEVe~~~~~L~~~~g~~I~~v 25 (98)
T cd08974 3 EGPSIVILREAAAAFKGQTVIRA 25 (98)
T ss_pred ccHHHHHHHHHHHHhCCCEEEEE
Confidence 68999966554443666555443
No 20
>COG2442 Uncharacterized conserved protein [Function unknown]
Probab=21.53 E-value=51 Score=20.54 Aligned_cols=13 Identities=46% Similarity=0.741 Sum_probs=11.6
Q ss_pred CCCHHHHHHhhcC
Q psy15038 54 ALTPDQIRETLNY 66 (67)
Q Consensus 54 ~LSp~q~eETl~Y 66 (67)
.||.+|+.++++|
T Consensus 55 ~Lt~~dI~aal~y 67 (79)
T COG2442 55 DLTLEDIRAALRY 67 (79)
T ss_pred CCCHHHHHHHHHH
Confidence 5999999999987
No 21
>COG1441 MenC O-succinylbenzoate synthase [Coenzyme metabolism]
Probab=21.26 E-value=63 Score=25.21 Aligned_cols=18 Identities=44% Similarity=0.765 Sum_probs=16.7
Q ss_pred HhHHHHhhcCceeeeccc
Q psy15038 12 IISLLEEQLPQYKLRADT 29 (67)
Q Consensus 12 liSlleeqiP~YkLRaDs 29 (67)
|+.|+.|-||.-.||.|.
T Consensus 146 ivnllLEaiPDL~LRLDA 163 (321)
T COG1441 146 IVNLLLEAIPDLHLRLDA 163 (321)
T ss_pred HHHHHHHhCccceeeecc
Confidence 789999999999999985
No 22
>cd00563 Dtyr_deacylase D-Tyrosyl-tRNAtyr deacylases; a class of tRNA-dependent hydrolases which are capable of hydrolyzing the ester bond of D-Tyrosyl-tRNA reducing the level of cellular D-Tyrosine while recycling the peptidyl-tRNA; found in bacteria and in eukaryotes but not in archea; beta barrel-like fold structure; forms homodimers in which two surface cavities serve as the active site for tRNA binding
Probab=20.87 E-value=58 Score=22.48 Aligned_cols=20 Identities=20% Similarity=0.296 Sum_probs=14.8
Q ss_pred CCCCCCCCCHHHHHHhhcCC
Q psy15038 48 QADDPTALTPDQIRETLNYF 67 (67)
Q Consensus 48 ~~~~~~~LSp~q~eETl~Yf 67 (67)
.|+=+.+.+|+.+++-+.+|
T Consensus 90 rP~F~~a~~~e~A~~ly~~f 109 (145)
T cd00563 90 RPSFSAAAPPDKAEPLYESF 109 (145)
T ss_pred CCCccccCCHHHHHHHHHHH
Confidence 34445688999999988775
No 23
>PF07981 Plasmod_MYXSPDY: Plasmodium repeat_MYXSPDY; InterPro: IPR012598 This repeat is found in two hypothetical Plasmodium proteins.
Probab=20.85 E-value=50 Score=15.73 Aligned_cols=7 Identities=57% Similarity=1.137 Sum_probs=5.8
Q ss_pred Cceeeec
Q psy15038 21 PQYKLRA 27 (67)
Q Consensus 21 P~YkLRa 27 (67)
|.|+||.
T Consensus 5 PdytL~~ 11 (17)
T PF07981_consen 5 PDYTLRL 11 (17)
T ss_pred CCceEEE
Confidence 8899885
No 24
>cd06562 GH20_HexA_HexB-like Beta-N-acetylhexosaminidases catalyze the removal of beta-1,4-linked N-acetyl-D-hexosamine residues from the non-reducing ends of N-acetyl-beta-D-hexosaminides including N-acetylglucosides and N-acetylgalactosides. The hexA and hexB genes encode the alpha- and beta-subunits of the two major beta-N-acetylhexosaminidase isoenzymes, N-acetyl-beta-D-hexosaminidase A (HexA) and beta-N-acetylhexosaminidase B (HexB). Both the alpha and the beta catalytic subunits have a TIM-barrel fold and belong to the glycosyl hydrolase family 20 (GH20). The HexA enzyme is a heterodimer containing one alpha and one beta subunit while the HexB enzyme is a homodimer containing two beta-subunits. Hexosaminidase mutations cause an inability to properly hydrolyze certain sphingolipids which accumulate in lysosomes within the brain, resulting in the lipid storage disorders Tay-Sachs and Sandhoff. Mutations in the alpha subunit cause in a deficiency in the HexA enzyme and result in
Probab=20.08 E-value=56 Score=24.48 Aligned_cols=54 Identities=19% Similarity=0.314 Sum_probs=38.6
Q ss_pred hHHhHHHHhhcCceeeeccccccccccccCcccccCCCCCCC--------CCCCCHHHHHHhhcC
Q psy15038 10 VEIISLLEEQLPQYKLRADTLTEFIGYENQDWFVPCPLQADD--------PTALTPDQIRETLNY 66 (67)
Q Consensus 10 vEliSlleeqiP~YkLRaDsl~~~~gYenqDW~~~~p~~~~~--------~~~LSp~q~eETl~Y 66 (67)
++-|..+-+++-.||+.+ +.+-+-++|-|-...+.-|.. ..-+|.++++|..+|
T Consensus 17 ~~~ik~~Id~ma~~KlN~---lh~HltDd~~~rle~~~~P~Lt~~ga~~~~~~YT~~di~eiv~y 78 (348)
T cd06562 17 VDSIKRTIDAMAYNKLNV---LHWHITDSQSFPLESPSYPELSKKGAYSPSEVYTPEDVKEIVEY 78 (348)
T ss_pred HHHHHHHHHHHHHhCCcE---EEEeEEcCCCceEeeCCCchhhhccCcCCCceECHHHHHHHHHH
Confidence 565666667778888876 344577899998776665543 224899999999877
Done!