Query psy15038
Match_columns 67
No_of_seqs 49 out of 51
Neff 3.6
Searched_HMMs 29240
Date Fri Aug 16 18:50:48 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15038.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/15038hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3us4_A Megakaryocyte-associate 44.7 14 0.00048 21.2 2.2 22 35-65 1-22 (98)
2 2cia_A Cytoplasmic protein NCK 43.2 12 0.00041 21.9 1.7 21 35-64 1-21 (102)
3 1lkk_A Human P56 tyrosine kina 30.1 32 0.0011 19.8 2.1 20 37-65 2-21 (105)
4 1nrv_A Growth factor receptor- 28.0 36 0.0012 19.7 2.1 21 36-65 2-22 (105)
5 1d4t_A T cell signal transduct 27.9 32 0.0011 19.9 1.9 20 37-65 2-21 (104)
6 3tkz_A Tyrosine-protein phosph 25.8 35 0.0012 19.9 1.7 21 36-65 4-24 (109)
7 1aot_F FYN protein-tyrosine ki 24.6 40 0.0014 19.4 1.8 20 37-65 3-22 (106)
8 3eaz_A Tyrosine-protein kinase 23.9 50 0.0017 19.1 2.2 21 36-65 5-25 (106)
9 3s9k_A Tyrosine-protein kinase 23.3 48 0.0017 19.4 2.0 21 36-65 6-26 (118)
10 1h9o_A Phosphatidylinositol 3- 22.9 49 0.0017 19.5 2.0 21 36-65 7-27 (112)
11 2ekx_A Cytoplasmic tyrosine-pr 22.5 51 0.0017 19.3 2.0 22 35-65 7-28 (110)
12 2crh_A VAV proto-oncogene; onc 21.5 59 0.002 20.1 2.3 22 35-65 22-43 (138)
13 2gsb_A RAS GTPase-activating p 20.6 53 0.0018 19.7 1.9 21 36-65 13-33 (119)
14 3k2m_A Proto-oncogene tyrosine 20.4 55 0.0019 19.1 1.9 20 37-65 3-22 (112)
No 1
>3us4_A Megakaryocyte-associated tyrosine-protein kinase; SH2 domain, signaling protein, structural genomics, joint CE structural genomics, JCSG; 1.50A {Homo sapiens} SCOP: d.93.1.1 PDB: 1jwo_A
Probab=44.70 E-value=14 Score=21.21 Aligned_cols=22 Identities=18% Similarity=0.428 Sum_probs=15.8
Q ss_pred ccccCcccccCCCCCCCCCCCCHHHHHHhhc
Q psy15038 35 GYENQDWFVPCPLQADDPTALTPDQIRETLN 65 (67)
Q Consensus 35 gYenqDW~~~~p~~~~~~~~LSp~q~eETl~ 65 (67)
|++.+.|++. .+|-++||+-|+
T Consensus 1 ~L~~~~Wyhg---------~isr~~Ae~lL~ 22 (98)
T 3us4_A 1 GLSLMPWFHG---------KISGQEAVQQLQ 22 (98)
T ss_dssp -CTTCTTBCC---------SCCHHHHHHHTC
T ss_pred CCccCcccCC---------CCCHHHHHHHcc
Confidence 4578899975 677788877664
No 2
>2cia_A Cytoplasmic protein NCK2; SH2-domain, SH3 domain, phosphorylation, binding specificity; HET: PTR MPD; 1.45A {Homo sapiens} PDB: 1z3k_A 2ci9_A* 2ci8_A*
Probab=43.23 E-value=12 Score=21.93 Aligned_cols=21 Identities=24% Similarity=0.445 Sum_probs=13.9
Q ss_pred ccccCcccccCCCCCCCCCCCCHHHHHHhh
Q psy15038 35 GYENQDWFVPCPLQADDPTALTPDQIRETL 64 (67)
Q Consensus 35 gYenqDW~~~~p~~~~~~~~LSp~q~eETl 64 (67)
|-+++.|++. .+|-++||+-|
T Consensus 1 ~p~~~~Wyhg---------~isR~~Ae~lL 21 (102)
T 2cia_A 1 GPLGSEWYYG---------NVTRHQAECAL 21 (102)
T ss_dssp ----CTTBCC---------SCCHHHHHHHH
T ss_pred CCcCCccccC---------CCCHHHHHHHH
Confidence 5578899875 78888888876
No 3
>1lkk_A Human P56 tyrosine kinase; complex (tyrosine kinase/peptide); HET: PTR; 1.00A {Homo sapiens} SCOP: d.93.1.1 PDB: 1lcj_A* 1bhf_A* 1bhh_A 1lkl_A* 1bhh_B 1fbz_A* 1ijr_A* 1cwd_L* 1cwe_A*
Probab=30.14 E-value=32 Score=19.79 Aligned_cols=20 Identities=25% Similarity=0.519 Sum_probs=15.4
Q ss_pred ccCcccccCCCCCCCCCCCCHHHHHHhhc
Q psy15038 37 ENQDWFVPCPLQADDPTALTPDQIRETLN 65 (67)
Q Consensus 37 enqDW~~~~p~~~~~~~~LSp~q~eETl~ 65 (67)
+++.|++. .+|-+.||+-|+
T Consensus 2 ~~~~Wyhg---------~isR~~Ae~lL~ 21 (105)
T 1lkk_A 2 EPEPWFFK---------NLSRKDAERQLL 21 (105)
T ss_dssp CCCTTBCT---------TCCHHHHHHHHT
T ss_pred CcCceecC---------CCCHHHHHHHHH
Confidence 57889875 778888888774
No 4
>1nrv_A Growth factor receptor-bound protein 10; dimer, signaling protein; 1.65A {Homo sapiens} SCOP: d.93.1.1 PDB: 3m7f_A
Probab=27.96 E-value=36 Score=19.72 Aligned_cols=21 Identities=14% Similarity=0.458 Sum_probs=15.8
Q ss_pred cccCcccccCCCCCCCCCCCCHHHHHHhhc
Q psy15038 36 YENQDWFVPCPLQADDPTALTPDQIRETLN 65 (67)
Q Consensus 36 YenqDW~~~~p~~~~~~~~LSp~q~eETl~ 65 (67)
.+.+.|++. .+|-+.||+-|+
T Consensus 2 h~~~~Wyhg---------~isR~~Ae~lL~ 22 (105)
T 1nrv_A 2 HRTQHWFHG---------RISREESHRIIK 22 (105)
T ss_dssp CTTSTTBCT---------TCCHHHHHHHHH
T ss_pred CccCcccCC---------CCCHHHHHHHHH
Confidence 467889875 778888887763
No 5
>1d4t_A T cell signal transduction molecule SAP; SH2 domain, tyrosine kinase, signal transduction, peptide recognition, signaling protein; 1.10A {Homo sapiens} SCOP: d.93.1.1 PDB: 1d1z_A 1d4w_A* 1m27_A*
Probab=27.93 E-value=32 Score=19.88 Aligned_cols=20 Identities=5% Similarity=0.036 Sum_probs=15.2
Q ss_pred ccCcccccCCCCCCCCCCCCHHHHHHhhc
Q psy15038 37 ENQDWFVPCPLQADDPTALTPDQIRETLN 65 (67)
Q Consensus 37 enqDW~~~~p~~~~~~~~LSp~q~eETl~ 65 (67)
+++.|++. .+|-+.||+-|+
T Consensus 2 ~~~~Wyhg---------~isR~~Ae~lL~ 21 (104)
T 1d4t_A 2 DAVAVYHG---------KISRETGEKLLL 21 (104)
T ss_dssp TTCTTBCC---------SCCHHHHHHHHH
T ss_pred CCCceEcc---------CCCHHHHHHHHH
Confidence 57889875 778888888763
No 6
>3tkz_A Tyrosine-protein phosphatase non-receptor type 11; SH2 domain, protein protein interactions, PTR residues, HYDR peptide complex; HET: PTR; 1.80A {Homo sapiens} PDB: 3tl0_A* 1aya_A* 1ayb_A* 1ayc_A* 1ayd_A
Probab=25.76 E-value=35 Score=19.90 Aligned_cols=21 Identities=24% Similarity=0.493 Sum_probs=13.8
Q ss_pred cccCcccccCCCCCCCCCCCCHHHHHHhhc
Q psy15038 36 YENQDWFVPCPLQADDPTALTPDQIRETLN 65 (67)
Q Consensus 36 YenqDW~~~~p~~~~~~~~LSp~q~eETl~ 65 (67)
.+++.|++. .+|-++||+-|+
T Consensus 4 l~~~~Wyhg---------~isr~~Ae~lL~ 24 (109)
T 3tkz_A 4 MTSRRWFHP---------NITGVEAENLLL 24 (109)
T ss_dssp ---CCSBCT---------TCCHHHHHHHHH
T ss_pred cccCCceec---------CCCHHHHHHHHh
Confidence 378899975 778888887663
No 7
>1aot_F FYN protein-tyrosine kinase; SH2 domain, signal transduction, peptide complex, complex (proto-oncogene/early protein); HET: PTR; NMR {Homo sapiens} SCOP: d.93.1.1 PDB: 1aou_F*
Probab=24.63 E-value=40 Score=19.40 Aligned_cols=20 Identities=15% Similarity=0.461 Sum_probs=15.3
Q ss_pred ccCcccccCCCCCCCCCCCCHHHHHHhhc
Q psy15038 37 ENQDWFVPCPLQADDPTALTPDQIRETLN 65 (67)
Q Consensus 37 enqDW~~~~p~~~~~~~~LSp~q~eETl~ 65 (67)
+++.|++. .+|-+.||+-|+
T Consensus 3 ~~~~Wyhg---------~isR~~Ae~lL~ 22 (106)
T 1aot_F 3 QAEEWYFG---------KLGRKDAERQLL 22 (106)
T ss_dssp CSSSSCCB---------SCCHHHHHHHHH
T ss_pred ccCccCCC---------CCCHHHHHHHHh
Confidence 67889875 778888887763
No 8
>3eaz_A Tyrosine-protein kinase CSK; SH2, disulfide, oxidized reduced, ATP-binding, cell membrane, cytoplasm, membrane, nucleotide-binding, phosphoprotein; 1.31A {Homo sapiens} PDB: 3eac_A
Probab=23.91 E-value=50 Score=19.10 Aligned_cols=21 Identities=24% Similarity=0.379 Sum_probs=15.9
Q ss_pred cccCcccccCCCCCCCCCCCCHHHHHHhhc
Q psy15038 36 YENQDWFVPCPLQADDPTALTPDQIRETLN 65 (67)
Q Consensus 36 YenqDW~~~~p~~~~~~~~LSp~q~eETl~ 65 (67)
.+++.|++. .+|-++||+-|+
T Consensus 5 L~~~~Wyhg---------~isr~~Ae~lL~ 25 (106)
T 3eaz_A 5 LSLMPWFHG---------KITREQAERLLY 25 (106)
T ss_dssp GGGCTTBCC---------SCCHHHHHHHTC
T ss_pred cccCCCcCC---------CCCHHHHHHHhC
Confidence 478899975 677888887664
No 9
>3s9k_A Tyrosine-protein kinase ITK/TSK; proline isomerization, CIS proline, domain swapped dimer, SH transferase; HET: CIT; 2.35A {Mus musculus} PDB: 2etz_A* 2eu0_A* 1lui_A 1luk_A 1lum_A 1lun_A 2k79_B 2k7a_B
Probab=23.31 E-value=48 Score=19.35 Aligned_cols=21 Identities=19% Similarity=0.521 Sum_probs=16.0
Q ss_pred cccCcccccCCCCCCCCCCCCHHHHHHhhc
Q psy15038 36 YENQDWFVPCPLQADDPTALTPDQIRETLN 65 (67)
Q Consensus 36 YenqDW~~~~p~~~~~~~~LSp~q~eETl~ 65 (67)
.+++.|++. .+|-++||+-|+
T Consensus 6 l~~~~Wyhg---------~isR~~Ae~lL~ 26 (118)
T 3s9k_A 6 LETYEWYNK---------SISRDKAEKLLL 26 (118)
T ss_dssp GGGSTTBCT---------TCCHHHHHHHHH
T ss_pred cccCceecC---------CCCHHHHHHHHH
Confidence 378899975 778888887663
No 10
>1h9o_A Phosphatidylinositol 3-kinase; transferase/receptor, complex (phosphotransferase/receptor), phosphotransferase, SH2 domain; HET: PTR; 1.79A {Homo sapiens} SCOP: d.93.1.1 PDB: 1pic_A* 1bfi_A 1bfj_A 1qad_A
Probab=22.90 E-value=49 Score=19.53 Aligned_cols=21 Identities=14% Similarity=0.344 Sum_probs=16.4
Q ss_pred cccCcccccCCCCCCCCCCCCHHHHHHhhc
Q psy15038 36 YENQDWFVPCPLQADDPTALTPDQIRETLN 65 (67)
Q Consensus 36 YenqDW~~~~p~~~~~~~~LSp~q~eETl~ 65 (67)
.+++.|++. .+|-++||+-|+
T Consensus 7 ~~~~~Wyhg---------~isR~~Ae~lL~ 27 (112)
T 1h9o_A 7 HDEKTWNVG---------SSNRNKAENLLR 27 (112)
T ss_dssp GSGGGTBCC---------SCCHHHHHHHHT
T ss_pred ccCCCcccC---------CCCHHHHHHHhc
Confidence 578899975 788888888763
No 11
>2ekx_A Cytoplasmic tyrosine-protein kinase BMX; SH2 domain, phosphotyrosine binding domain, protein tyrosine kinase, signal transduction; NMR {Homo sapiens}
Probab=22.46 E-value=51 Score=19.26 Aligned_cols=22 Identities=27% Similarity=0.664 Sum_probs=16.6
Q ss_pred ccccCcccccCCCCCCCCCCCCHHHHHHhhc
Q psy15038 35 GYENQDWFVPCPLQADDPTALTPDQIRETLN 65 (67)
Q Consensus 35 gYenqDW~~~~p~~~~~~~~LSp~q~eETl~ 65 (67)
..+.+.|++. .+|-+.||+-|+
T Consensus 7 ~l~~~~Wyhg---------~isR~~Ae~lL~ 28 (110)
T 2ekx_A 7 GLDDYDWFAG---------NISRSQSEQLLR 28 (110)
T ss_dssp CTTTSSSBCC---------SCCHHHHHHHHH
T ss_pred cccCCCeecC---------CCCHHHHHHHHh
Confidence 3478899875 788888888764
No 12
>2crh_A VAV proto-oncogene; oncoprotein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2ror_A* 2lct_A*
Probab=21.52 E-value=59 Score=20.14 Aligned_cols=22 Identities=9% Similarity=0.256 Sum_probs=15.8
Q ss_pred ccccCcccccCCCCCCCCCCCCHHHHHHhhc
Q psy15038 35 GYENQDWFVPCPLQADDPTALTPDQIRETLN 65 (67)
Q Consensus 35 gYenqDW~~~~p~~~~~~~~LSp~q~eETl~ 65 (67)
.|+.+.|++. .||-++||+-|+
T Consensus 22 ~~~~~~WyhG---------~isR~eAe~lL~ 43 (138)
T 2crh_A 22 DLSVHLWYAG---------PMERAGAESILA 43 (138)
T ss_dssp CGGGSSSBCC---------SCCHHHHHHHTT
T ss_pred CCCcCCcccC---------CCCHHHHHHHhc
Confidence 4566777764 788888888764
No 13
>2gsb_A RAS GTPase-activating protein 1; GAP, RAS P21 protein activator, P120GAP, rasgap, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=20.62 E-value=53 Score=19.74 Aligned_cols=21 Identities=19% Similarity=0.347 Sum_probs=16.3
Q ss_pred cccCcccccCCCCCCCCCCCCHHHHHHhhc
Q psy15038 36 YENQDWFVPCPLQADDPTALTPDQIRETLN 65 (67)
Q Consensus 36 YenqDW~~~~p~~~~~~~~LSp~q~eETl~ 65 (67)
.+++.|++. .+|-+.||+-|+
T Consensus 13 l~~~~WyhG---------~isR~~Ae~lL~ 33 (119)
T 2gsb_A 13 HEGKIWFHG---------KISKQEAYNLLM 33 (119)
T ss_dssp GGGCSSBCC---------SSCHHHHHHHHH
T ss_pred cccCCcccC---------CCCHHHHHHHHh
Confidence 478899975 788888888764
No 14
>3k2m_A Proto-oncogene tyrosine-protein kinase ABL1; engineered binding protein, antibody mimic, protein-protein SH2 domain, ATP-binding, phosphoprotein; 1.75A {Homo sapiens} PDB: 3uyo_A 3t04_A 1ab2_A
Probab=20.41 E-value=55 Score=19.09 Aligned_cols=20 Identities=15% Similarity=0.451 Sum_probs=15.1
Q ss_pred ccCcccccCCCCCCCCCCCCHHHHHHhhc
Q psy15038 37 ENQDWFVPCPLQADDPTALTPDQIRETLN 65 (67)
Q Consensus 37 enqDW~~~~p~~~~~~~~LSp~q~eETl~ 65 (67)
+.+.|++. .+|-++||+-|+
T Consensus 3 ~~~~Wyhg---------~isR~~Ae~lL~ 22 (112)
T 3k2m_A 3 EKHSWYHG---------PVSRNAAEYLLS 22 (112)
T ss_dssp GGSTTEEE---------SCCHHHHHHHTT
T ss_pred ccCcceee---------CCCHHHHHHHhc
Confidence 67889986 677788877664
Done!