RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy15038
(67 letters)
>2c29_D Dihydroflavonol 4-reductase; flavonoids, short dehydrogenase
reductase, NADPH, dihydroquercetin, rossmann fold,
oxidoreductase; HET: NAP DQH; 1.81A {Vitis vinifera}
PDB: 2iod_A* 2nnl_D* 3bxx_A* 3c1t_A*
Length = 337
Score = 26.1 bits (58), Expect = 0.74
Identities = 6/25 (24%), Positives = 14/25 (56%)
Query: 1 VCCGGDLPEVEIISLLEEQLPQYKL 25
+C D +++ +L E+ P+Y +
Sbjct: 252 ICSSHDCIILDLAKMLREKYPEYNI 276
>1stz_A Heat-inducible transcription repressor HRCA homol; circe element,
structural genomics, BSGC structure FUN NIH, protein
structure initiative; 2.20A {Thermotoga maritima} SCOP:
a.4.5.51 d.110.2.3
Length = 338
Score = 26.0 bits (58), Expect = 0.81
Identities = 6/30 (20%), Positives = 13/30 (43%)
Query: 11 EIISLLEEQLPQYKLRADTLTEFIGYENQD 40
++ +++Q L + +T IG E
Sbjct: 252 NLLEEVKDQKFLESLVGEGITVRIGREIGR 281
>2p4h_X Vestitone reductase; NADPH-dependent reductase, isoflavonoid, plant
protein; 1.40A {Medicago sativa}
Length = 322
Score = 26.0 bits (58), Expect = 0.91
Identities = 7/25 (28%), Positives = 13/25 (52%)
Query: 1 VCCGGDLPEVEIISLLEEQLPQYKL 25
C +P E+ LL + P+Y++
Sbjct: 248 NCSPFIVPIEEMSQLLSAKYPEYQI 272
>2rh8_A Anthocyanidin reductase; flavonoids, rossmann fold, short chain
dehydrogenase/reductase, oxidoreductase; 2.22A {Vitis
vinifera} PDB: 3hfs_A
Length = 338
Score = 25.7 bits (57), Expect = 1.0
Identities = 8/25 (32%), Positives = 14/25 (56%)
Query: 1 VCCGGDLPEVEIISLLEEQLPQYKL 25
+CC + E+ L ++ PQYK+
Sbjct: 264 ICCAANTSVPELAKFLSKRYPQYKV 288
>1ps9_A 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel, flavodoxin,
flavin, electron transfer, hydride transfer,
oxidoreductase; HET: FAD FMN NAP MDE; 2.20A {Escherichia
coli} SCOP: c.1.4.1 c.3.1.1 c.4.1.1
Length = 671
Score = 25.7 bits (57), Expect = 1.1
Identities = 5/25 (20%), Positives = 13/25 (52%)
Query: 43 VPCPLQADDPTALTPDQIRETLNYF 67
+ P+ P L+ ++I + ++ F
Sbjct: 119 LQAPINRFVPHELSHEEILQLIDNF 143
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial
GTPase, bacterial POL motility, POLE localisation,
alpha/beta protein; HET: GDP; 1.90A {Thermus
thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Length = 198
Score = 25.1 bits (55), Expect = 1.5
Identities = 5/16 (31%), Positives = 9/16 (56%)
Query: 50 DDPTALTPDQIRETLN 65
D P AL + +R ++
Sbjct: 146 DLPDALPVEMVRAVVD 161
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein
transport, G protein, proline isomerization, circular
permutation; 2.20A {Saccharomyces cerevisiae}
Length = 193
Score = 24.7 bits (54), Expect = 2.0
Identities = 5/16 (31%), Positives = 9/16 (56%)
Query: 50 DDPTALTPDQIRETLN 65
+ TA P +I++ L
Sbjct: 167 ELFTARPPSKIKDALE 182
>1itu_A Renal dipeptidase; glycoprotein, membrane-bound, zinc protease
BET lactamase, cilastatin, complex
(hydrolase-inhibitor), hydro; HET: NAG CIL; 2.00A {Homo
sapiens} SCOP: c.1.9.7 PDB: 1itq_A*
Length = 369
Score = 24.6 bits (54), Expect = 2.3
Identities = 6/19 (31%), Positives = 9/19 (47%)
Query: 42 FVPCPLQADDPTALTPDQI 60
+ PC Q D T +Q+
Sbjct: 68 YTPCDTQNKDAVRRTLEQM 86
>1mp1_A Ser/Arg-related nuclear matrix protein; four helix bundle, RNA
binding protein; NMR {Homo sapiens} SCOP: a.188.1.1
Length = 111
Score = 24.2 bits (52), Expect = 3.1
Identities = 10/32 (31%), Positives = 16/32 (50%)
Query: 12 IISLLEEQLPQYKLRADTLTEFIGYENQDWFV 43
I + LE + P K+ LT F+ +N F+
Sbjct: 48 IFNQLEVKNPDSKMMQINLTGFLNGKNAREFM 79
>3neh_A Renal dipeptidase family protein; structural genomics, nysgrc,
dipeptide L-Leu-D-Ala, PSI-2, P structure initiative;
HET: L3A; 1.64A {Listeria monocytogenes} PDB: 3lu2_A
Length = 318
Score = 24.1 bits (53), Expect = 4.0
Identities = 3/24 (12%), Positives = 9/24 (37%), Gaps = 2/24 (8%)
Query: 39 QDW--FVPCPLQADDPTALTPDQI 60
Q + F+ + + +Q+
Sbjct: 46 QGFAIFLDEDIPVEHKWKKAVEQV 69
>2fh5_B SR-beta, signal recognition particle receptor beta subunit;
endomembrane targeting, GTPase, GAP, longin domain,
SEDL, transport protein; HET: GTP; 2.45A {Mus musculus}
SCOP: c.37.1.8 PDB: 2go5_2
Length = 214
Score = 23.9 bits (52), Expect = 4.2
Identities = 4/16 (25%), Positives = 7/16 (43%)
Query: 50 DDPTALTPDQIRETLN 65
D A + I++ L
Sbjct: 126 DIAMAKSAKLIQQQLE 141
>1vco_A CTP synthetase; tetramer, riken structural genomics/proteomics
initiative, RSGI, structural genomics, ligase; HET: GLN;
2.15A {Thermus thermophilus} SCOP: c.23.16.1 c.37.1.10
PDB: 1vcn_A 1vcm_A
Length = 550
Score = 24.0 bits (53), Expect = 5.1
Identities = 6/25 (24%), Positives = 11/25 (44%)
Query: 21 PQYKLRADTLTEFIGYENQDWFVPC 45
P + R L E I ++ +F+
Sbjct: 495 PGMRGRGAGLVEAIELKDHPFFLGL 519
>4edg_A DNA primase; catalytic domain, nucleoside triphosphate, nucleoside
polyph protein-ligand complex, transferase; HET: DNA
ATP; 2.00A {Staphylococcus aureus} PDB: 4edk_A* 4edr_A*
4edt_A* 4edv_A* 4ee1_A*
Length = 329
Score = 23.8 bits (52), Expect = 6.1
Identities = 3/9 (33%), Positives = 5/9 (55%)
Query: 53 TALTPDQIR 61
T L+ + I
Sbjct: 181 TQLSDEHIT 189
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.142 0.450
Gapped
Lambda K H
0.267 0.0752 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,069,280
Number of extensions: 47490
Number of successful extensions: 174
Number of sequences better than 10.0: 1
Number of HSP's gapped: 174
Number of HSP's successfully gapped: 16
Length of query: 67
Length of database: 6,701,793
Length adjustment: 38
Effective length of query: 29
Effective length of database: 5,640,795
Effective search space: 163583055
Effective search space used: 163583055
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (23.4 bits)