RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy15038
         (67 letters)



>d2ioja1 c.98.2.2 (A:206-325) Hypothetical protein AF1212
           {Archaeoglobus fulgidus [TaxId: 2234]}
          Length = 120

 Score = 23.6 bits (51), Expect = 1.8
 Identities = 9/32 (28%), Positives = 15/32 (46%), Gaps = 1/32 (3%)

Query: 1   VCCGGDLPEVEIISLLEEQ-LPQYKLRADTLT 31
           +  G   P   +++  EE+ +P      DTLT
Sbjct: 73  ILTGNLEPVQLVLTKAEERGVPVILTGHDTLT 104


>d1amua_ e.23.1.1 (A:) Phenylalanine activating domain of gramicidin
           synthetase 1 {Bacillus brevis [TaxId: 1393]}
          Length = 514

 Score = 23.7 bits (50), Expect = 2.4
 Identities = 5/25 (20%), Positives = 10/25 (40%)

Query: 1   VCCGGDLPEVEIISLLEEQLPQYKL 25
                 +P  ++     E+LP Y +
Sbjct: 460 FVSEKHIPLEQLRQFSSEELPTYMI 484


>d1stza2 d.110.2.3 (A:101-336) Heat-inducible transcription
           repressor HrcA, C-terminal domain {Thermotoga maritima
           [TaxId: 2336]}
          Length = 236

 Score = 23.3 bits (50), Expect = 2.5
 Identities = 6/30 (20%), Positives = 13/30 (43%)

Query: 11  EIISLLEEQLPQYKLRADTLTEFIGYENQD 40
            ++  +++Q     L  + +T  IG E   
Sbjct: 152 NLLEEVKDQKFLESLVGEGITVRIGREIGR 181


>d1u2ca2 d.272.1.1 (A:179-303) Dystroglycan, domain 2 {Mouse (Mus
           musculus) [TaxId: 10090]}
          Length = 125

 Score = 23.3 bits (50), Expect = 2.7
 Identities = 8/43 (18%), Positives = 15/43 (34%), Gaps = 5/43 (11%)

Query: 1   VCCGGDLPEVEIISLLEEQLPQYKLRADTLTEFIGYENQDWFV 43
           + C  +   V  I  +E        R   ++  +GY    W +
Sbjct: 82  LGCSLNQNSVPDIRGVETP-----AREGAMSAQLGYPVVGWHI 119


>d1vcoa1 c.23.16.1 (A:298-547) CTP synthase PyrG, C-terminal domain
           {Thermus thermophilus [TaxId: 274]}
          Length = 250

 Score = 22.7 bits (48), Expect = 4.6
 Identities = 6/25 (24%), Positives = 11/25 (44%)

Query: 21  PQYKLRADTLTEFIGYENQDWFVPC 45
           P  + R   L E I  ++  +F+  
Sbjct: 198 PGMRGRGAGLVEAIELKDHPFFLGL 222


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.320    0.142    0.450 

Gapped
Lambda     K      H
   0.267   0.0660    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 272,416
Number of extensions: 10190
Number of successful extensions: 32
Number of sequences better than 10.0: 1
Number of HSP's gapped: 32
Number of HSP's successfully gapped: 5
Length of query: 67
Length of database: 2,407,596
Length adjustment: 36
Effective length of query: 31
Effective length of database: 1,913,316
Effective search space: 59312796
Effective search space used: 59312796
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 47 (22.0 bits)