Query psy1504
Match_columns 153
No_of_seqs 118 out of 1082
Neff 10.1
Searched_HMMs 46136
Date Fri Aug 16 18:53:26 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1504.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/1504hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0054|consensus 99.9 5.8E-22 1.3E-26 163.4 16.7 148 4-152 217-364 (1381)
2 TIGR01271 CFTR_protein cystic 99.8 3E-19 6.6E-24 151.4 19.1 150 3-152 95-244 (1490)
3 PTZ00243 ABC transporter; Prov 99.8 1E-18 2.3E-23 148.5 19.2 150 2-152 258-409 (1560)
4 TIGR00957 MRP_assoc_pro multi 99.8 5E-18 1.1E-22 144.5 19.1 149 3-152 332-480 (1522)
5 PLN03130 ABC transporter C fam 99.7 2.5E-16 5.4E-21 134.5 19.1 148 3-152 316-463 (1622)
6 PLN03232 ABC transporter C fam 99.7 2.5E-16 5.4E-21 134.1 18.9 148 3-152 316-463 (1495)
7 PF00664 ABC_membrane: ABC tra 99.7 4.1E-15 9E-20 105.1 17.2 149 3-151 14-163 (275)
8 PRK11174 cysteine/glutathione 99.6 2E-13 4.3E-18 107.6 18.8 123 3-126 37-160 (588)
9 KOG0058|consensus 99.6 2.6E-13 5.5E-18 105.9 16.3 134 4-138 163-300 (716)
10 PRK10789 putative multidrug tr 99.5 1.4E-12 3E-17 102.6 18.9 127 3-130 10-137 (569)
11 TIGR02868 CydC thiol reductant 99.5 2.4E-12 5.3E-17 100.4 18.7 134 3-138 28-165 (529)
12 TIGR02857 CydD thiol reductant 99.5 3.6E-12 7.8E-17 99.5 19.2 134 3-137 18-155 (529)
13 PRK11160 cysteine/glutathione 99.5 5.9E-12 1.3E-16 99.1 18.5 135 3-137 31-171 (574)
14 TIGR03375 type_I_sec_LssB type 99.5 1.5E-11 3.2E-16 98.8 19.1 139 3-145 162-301 (694)
15 TIGR00958 3a01208 Conjugate Tr 99.5 1.5E-11 3.2E-16 99.0 18.9 129 3-133 176-305 (711)
16 TIGR03797 NHPM_micro_ABC2 NHPM 99.5 1.7E-11 3.6E-16 98.4 18.7 134 3-139 151-285 (686)
17 TIGR01846 type_I_sec_HlyB type 99.4 2E-11 4.4E-16 98.0 18.8 127 3-132 154-281 (694)
18 TIGR03796 NHPM_micro_ABC1 NHPM 99.4 1.5E-11 3.3E-16 99.0 18.0 133 3-138 169-302 (710)
19 TIGR01193 bacteriocin_ABC ABC- 99.4 2.5E-11 5.4E-16 97.7 18.4 124 3-129 171-295 (708)
20 COG2274 SunT ABC-type bacterio 99.4 3.2E-11 7E-16 96.2 18.6 133 3-138 169-302 (709)
21 PRK10790 putative multidrug tr 99.4 5E-11 1.1E-15 94.2 19.0 124 3-126 38-162 (592)
22 TIGR01192 chvA glucan exporter 99.4 5.3E-11 1.2E-15 93.9 18.6 119 3-126 34-153 (585)
23 TIGR01194 cyc_pep_trnsptr cycl 99.4 3.2E-11 7E-16 94.7 17.0 89 39-127 62-150 (555)
24 TIGR02203 MsbA_lipidA lipid A 99.4 1.2E-10 2.5E-15 91.8 18.8 133 4-138 30-163 (571)
25 TIGR02204 MsbA_rel ABC transpo 99.4 1.5E-10 3.2E-15 91.3 18.8 123 3-127 33-156 (576)
26 PRK11176 lipid transporter ATP 99.4 1.5E-10 3.2E-15 91.4 18.7 131 5-137 42-173 (582)
27 PRK10522 multidrug transporter 99.4 8E-11 1.7E-15 92.3 16.7 96 44-139 62-157 (547)
28 TIGR00954 3a01203 Peroxysomal 99.3 7.8E-11 1.7E-15 94.1 14.8 148 3-151 111-261 (659)
29 COG4988 CydD ABC-type transpor 99.3 7.5E-10 1.6E-14 85.1 18.1 145 6-152 18-166 (559)
30 PTZ00265 multidrug resistance 99.3 5.7E-10 1.2E-14 95.5 18.6 123 4-127 841-966 (1466)
31 PTZ00265 multidrug resistance 99.3 5.4E-10 1.2E-14 95.7 18.4 127 5-136 77-204 (1466)
32 PRK13657 cyclic beta-1,2-gluca 99.3 1.4E-09 3.1E-14 86.0 18.7 119 3-126 34-153 (588)
33 COG1132 MdlB ABC-type multidru 99.2 2.1E-09 4.5E-14 84.7 18.4 131 3-137 29-163 (567)
34 PLN03130 ABC transporter C fam 99.2 3E-09 6.4E-14 92.0 18.6 105 34-138 957-1062(1622)
35 TIGR00957 MRP_assoc_pro multi 99.2 2.3E-09 4.9E-14 92.4 17.6 113 35-147 1010-1123(1522)
36 TIGR01842 type_I_sec_PrtD type 99.1 1.8E-08 3.9E-13 79.1 18.5 127 3-137 21-152 (544)
37 PLN03232 ABC transporter C fam 99.1 8.6E-09 1.9E-13 88.8 17.0 105 33-137 953-1058(1495)
38 TIGR01271 CFTR_protein cystic 99.0 4.7E-08 1E-12 84.4 17.0 106 42-147 937-1043(1490)
39 PTZ00243 ABC transporter; Prov 99.0 4.4E-08 9.4E-13 84.8 16.8 85 53-137 1021-1106(1560)
40 KOG0055|consensus 99.0 1.5E-07 3.4E-12 78.2 18.8 120 31-151 708-833 (1228)
41 COG4987 CydC ABC-type transpor 99.0 8E-08 1.7E-12 73.6 15.9 106 32-137 60-167 (573)
42 KOG0054|consensus 98.9 1.1E-07 2.5E-12 80.2 15.2 116 35-150 863-979 (1381)
43 KOG0057|consensus 98.5 1.1E-05 2.3E-10 62.4 15.0 130 3-132 45-177 (591)
44 COG4615 PvdE ABC-type sideroph 98.4 8.8E-06 1.9E-10 60.9 11.3 104 46-149 64-167 (546)
45 KOG0055|consensus 98.4 1.6E-05 3.5E-10 66.6 13.7 107 32-138 73-180 (1228)
46 PF13748 ABC_membrane_3: ABC t 98.0 0.0018 3.9E-08 45.4 17.2 134 3-150 25-159 (237)
47 PF06472 ABC_membrane_2: ABC t 97.9 0.0039 8.5E-08 45.3 16.4 102 32-133 68-173 (281)
48 COG4618 ArpD ABC-type protease 97.7 0.0049 1.1E-07 47.9 14.4 141 5-152 40-185 (580)
49 KOG0056|consensus 96.6 0.0054 1.2E-07 47.8 5.4 93 43-138 272-365 (790)
50 PRK12369 putative transporter; 96.3 0.32 6.9E-06 36.3 17.0 88 35-128 68-156 (326)
51 COG5265 ATM1 ABC-type transpor 95.5 0.14 3.1E-06 39.3 8.2 93 53-145 5-99 (497)
52 PRK11098 microcin B17 transpor 94.8 1.4 3E-05 34.0 15.7 88 35-129 143-231 (409)
53 KOG0060|consensus 94.1 1.1 2.5E-05 35.9 10.2 102 36-137 128-233 (659)
54 TIGR00954 3a01203 Peroxysomal 93.2 4.1 8.9E-05 33.5 13.6 116 35-151 140-257 (659)
55 COG4178 ABC-type uncharacteriz 90.3 8.8 0.00019 31.2 13.9 86 43-129 99-191 (604)
56 PRK11160 cysteine/glutathione 82.9 23 0.0005 28.6 15.0 12 85-96 107-118 (574)
57 PRK11174 cysteine/glutathione 82.7 24 0.00051 28.5 15.0 34 39-72 76-109 (588)
58 TIGR01842 type_I_sec_PrtD type 81.2 26 0.00057 28.0 15.2 23 47-69 59-81 (544)
59 TIGR02868 CydC thiol reductant 80.2 28 0.00061 27.7 15.3 30 45-74 64-93 (529)
60 TIGR02857 CydD thiol reductant 80.0 28 0.00061 27.6 14.6 33 42-74 52-84 (529)
61 TIGR01194 cyc_pep_trnsptr cycl 77.9 35 0.00075 27.5 14.6 127 4-138 34-164 (555)
62 TIGR00958 3a01208 Conjugate Tr 76.3 44 0.00095 27.9 14.9 39 35-73 210-248 (711)
63 PRK13657 cyclic beta-1,2-gluca 68.9 61 0.0013 26.2 14.8 22 50-71 72-93 (588)
64 PF00664 ABC_membrane: ABC tra 65.4 41 0.0009 23.0 12.9 29 47-75 54-82 (275)
65 PRK11176 lipid transporter ATP 65.0 72 0.0016 25.7 15.5 19 52-70 91-109 (582)
66 PF05992 SbmA_BacA: SbmA/BacA- 64.0 59 0.0013 24.3 17.7 91 28-125 54-145 (315)
67 PF11674 DUF3270: Protein of u 64.0 29 0.00063 20.8 7.8 53 99-151 35-89 (90)
68 PRK10790 putative multidrug tr 59.6 94 0.002 25.2 14.9 27 47-73 78-104 (592)
69 TIGR02203 MsbA_lipidA lipid A 55.3 1.1E+02 0.0024 24.6 14.8 18 52-69 80-97 (571)
70 COG1133 SbmA ABC-type long-cha 55.1 88 0.0019 23.5 14.8 90 29-125 133-223 (405)
71 PRK10522 multidrug transporter 54.3 1.1E+02 0.0024 24.5 15.2 125 7-140 33-161 (547)
72 TIGR01192 chvA glucan exporter 48.2 1.5E+02 0.0032 24.1 15.1 32 43-74 65-96 (585)
73 KOG0064|consensus 48.1 1.6E+02 0.0034 24.3 11.7 88 36-124 163-255 (728)
74 TIGR02204 MsbA_rel ABC transpo 44.2 1.7E+02 0.0037 23.6 14.7 28 45-72 77-104 (576)
75 PRK10789 putative multidrug tr 39.9 2E+02 0.0044 23.3 14.7 37 36-72 46-82 (569)
76 PF04246 RseC_MucC: Positive r 35.3 96 0.0021 19.7 4.1 68 82-151 50-119 (135)
77 TIGR01846 type_I_sec_HlyB type 34.3 2.7E+02 0.006 23.2 14.7 21 50-70 203-223 (694)
78 KOG3415|consensus 34.2 1.2E+02 0.0026 19.0 6.7 41 64-104 19-59 (129)
79 COG1132 MdlB ABC-type multidru 33.7 2.5E+02 0.0055 22.6 15.2 35 38-72 64-98 (567)
80 TIGR03797 NHPM_micro_ABC2 NHPM 32.8 2.9E+02 0.0063 23.0 14.8 29 43-71 193-221 (686)
81 PF08711 Med26: TFIIS helical 29.8 89 0.0019 16.1 4.0 46 70-115 3-52 (53)
82 KOG3758|consensus 29.4 1.7E+02 0.0038 24.2 5.3 52 56-107 45-97 (655)
83 PF15176 LRR19-TM: Leucine-ric 29.4 76 0.0017 19.4 2.6 10 130-139 17-26 (102)
84 PF08700 Vps51: Vps51/Vps67; 28.1 1.3E+02 0.0027 17.3 6.2 50 55-111 32-81 (87)
85 COG0598 CorA Mg2+ and Co2+ tra 27.6 2.6E+02 0.0057 20.8 5.9 25 127-152 295-319 (322)
86 TIGR03375 type_I_sec_LssB type 26.6 3.8E+02 0.0082 22.3 14.7 21 50-70 211-231 (694)
87 PF11120 DUF2636: Protein of u 24.4 1.4E+02 0.003 16.6 3.5 21 112-132 4-24 (62)
88 PF14418 OHA: OST-HTH Associat 24.2 1.3E+02 0.0029 17.2 3.0 29 66-94 12-40 (75)
89 COG4988 CydD ABC-type transpor 24.1 4.1E+02 0.0089 21.9 13.8 106 36-145 42-152 (559)
90 COG4270 Predicted membrane pro 23.5 1.5E+02 0.0033 18.7 3.3 42 112-153 49-91 (131)
91 PHA02815 hypothetical protein; 22.7 1.5E+02 0.0032 16.3 2.8 23 115-137 5-27 (64)
92 TIGR00383 corA magnesium Mg(2+ 22.7 3.2E+02 0.0069 20.1 7.6 15 127-141 291-305 (318)
93 PRK11546 zraP zinc resistance 21.6 2.2E+02 0.0048 18.7 3.9 47 58-104 59-105 (143)
94 COG3088 CcmH Uncharacterized p 20.9 2.7E+02 0.0058 18.5 5.9 31 58-95 59-89 (153)
95 KOG0058|consensus 20.3 5.5E+02 0.012 21.9 14.8 47 31-77 193-239 (716)
No 1
>KOG0054|consensus
Probab=99.89 E-value=5.8e-22 Score=163.40 Aligned_cols=148 Identities=30% Similarity=0.518 Sum_probs=139.0
Q ss_pred hchhHHHHHHHhhhcccCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhccCcccccC
Q psy1504 4 GITRPFVLGMFLSYFKVASTTATETAAVAGGALVLITFLNSLLNAHYNTMSSHIGLRMRAAVCSLVFRKCLKLDMVSTRE 83 (153)
Q Consensus 4 ~~~~p~~~~~ii~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~lr~~if~k~l~l~~~~~~~ 83 (153)
...+|.+++.+++++.++ +.+...++.++.+++++.++++++...+.+...+.+.+++..+...+|+|.++++....++
T Consensus 217 ~~~~P~lL~~li~~~~~~-~~~~~~g~~~a~~lf~~~~l~~l~~~~~~~~~~~~g~r~R~al~~~IY~K~L~ls~~~~~~ 295 (1381)
T KOG0054|consen 217 GFVGPLLLKKLILFFSEK-RLPLNNGYLLAVLLFLASLLQSLLLHQYFFVSFRVGMRLRSALISAIYRKALRLSNSARGE 295 (1381)
T ss_pred ccccHHHHHHHHHHhcCC-CcccchhHHHHHHHHHHHHHHHHHHhHHHHHHHhhhhhHHHHHHHHHHHhhhcCchhhccC
Confidence 578999999999998653 3345567889999999999999999999999999999999999999999999999999999
Q ss_pred CChhHHHHHHHhhHhHHHHHHHHhHHHhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhcc
Q psy1504 84 TAPGQIVNLVSNDVSRFDLVTVTSHFMWSSPIISLIVTYIIYKDIGNAAFFGLAAAFCVIPLQLCSTYT 152 (153)
Q Consensus 84 ~~~G~i~~~~t~D~~~i~~~~~~~~~~~~~~i~ii~~~~~l~~~lg~~~l~~~~~~~~~~~~~~~i~k~ 152 (153)
+++|+++|+|++|++++.+...++|.+|..|++++++++++|..+|+++++|++++++++|+|..++|+
T Consensus 296 ~t~G~ivNlms~D~~ri~~~~~~~h~~w~~Plqi~~~l~lLy~~LG~sa~~G~~~~il~~p~n~~~a~~ 364 (1381)
T KOG0054|consen 296 TTVGEIVNLMSVDAQRLSDAACFLHLLWSAPLQIILALYLLYGLLGPSALAGVAVMVLLIPLNSFLAKK 364 (1381)
T ss_pred CCcchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999875
No 2
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=99.84 E-value=3e-19 Score=151.44 Aligned_cols=150 Identities=25% Similarity=0.429 Sum_probs=133.4
Q ss_pred hhchhHHHHHHHhhhcccCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhccCccccc
Q psy1504 3 LGITRPFVLGMFLSYFKVASTTATETAAVAGGALVLITFLNSLLNAHYNTMSSHIGLRMRAAVCSLVFRKCLKLDMVSTR 82 (153)
Q Consensus 3 ~~~~~p~~~~~ii~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~lr~~if~k~l~l~~~~~~ 82 (153)
+.+++|++++.+++++...+......++.++.+++++.++..++.+.+.|...+.+.+++..++..+|+|.++++...++
T Consensus 95 ~~~~~P~ll~~li~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~~L~~~iy~K~L~l~~~~~~ 174 (1490)
T TIGR01271 95 TKAVQPLLLGRIIASYDPFNAPEREIAYYLALGLCLLFIVRTLLLHPAIFGLHHLGMQMRIALFSLIYKKTLKLSSRVLD 174 (1490)
T ss_pred HHHHHHHHHHHHHHHhccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHhc
Confidence 56789999999999884311112234566777788888889999999999999999999999999999999999999999
Q ss_pred CCChhHHHHHHHhhHhHHHHHHHHhHHHhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhcc
Q psy1504 83 ETAPGQIVNLVSNDVSRFDLVTVTSHFMWSSPIISLIVTYIIYKDIGNAAFFGLAAAFCVIPLQLCSTYT 152 (153)
Q Consensus 83 ~~~~G~i~~~~t~D~~~i~~~~~~~~~~~~~~i~ii~~~~~l~~~lg~~~l~~~~~~~~~~~~~~~i~k~ 152 (153)
+.++|+++|++++|++++++....++.+|..|+++++++++++..+||++++|+.++++++|++..++|+
T Consensus 175 ~~~~g~i~nl~s~Dv~~i~~~~~~~~~~~~~pi~i~~~~~lL~~~~G~~~l~~l~v~~~~~~~~~~~~~~ 244 (1490)
T TIGR01271 175 KISTGQLVSLLSNNLNKFDEGLALAHFVWIAPLQVILLMGLIWELLEVNGFCGLGFLILLALFQACLGQK 244 (1490)
T ss_pred CCCHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999998888999999999999999999999999999999999999999998875
No 3
>PTZ00243 ABC transporter; Provisional
Probab=99.83 E-value=1e-18 Score=148.51 Aligned_cols=150 Identities=23% Similarity=0.433 Sum_probs=132.7
Q ss_pred chhchhHHHHHHHhhhcccCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhccCcccc
Q psy1504 2 VLGITRPFVLGMFLSYFKVASTTATETAAVAGGALVLITFLNSLLNAHYNTMSSHIGLRMRAAVCSLVFRKCLKLDMVST 81 (153)
Q Consensus 2 ~~~~~~p~~~~~ii~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~lr~~if~k~l~l~~~~~ 81 (153)
++.+++|++++.+++++.+ ++.....++.++.+++++.++.+++.+.+.+...+.+.+++..++..+|+|+++++....
T Consensus 258 ~~~l~~P~ll~~~v~~l~~-~~~~~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~r~~~~~r~~L~~~if~K~l~ls~~~~ 336 (1560)
T PTZ00243 258 VCTLTLPVLLKYFVKFLDA-DNATWGRGLGLVLTLFLTQLIQSVCLHRFYYISIRCGLQYRSALNALIFEKCFTISSKSL 336 (1560)
T ss_pred HHHHHHHHHHHHHHHHhcC-CCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhh
Confidence 3567899999999998753 222333355666677788889999999999999999999999999999999999998877
Q ss_pred c--CCChhHHHHHHHhhHhHHHHHHHHhHHHhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhcc
Q psy1504 82 R--ETAPGQIVNLVSNDVSRFDLVTVTSHFMWSSPIISLIVTYIIYKDIGNAAFFGLAAAFCVIPLQLCSTYT 152 (153)
Q Consensus 82 ~--~~~~G~i~~~~t~D~~~i~~~~~~~~~~~~~~i~ii~~~~~l~~~lg~~~l~~~~~~~~~~~~~~~i~k~ 152 (153)
+ +.++|+++|++++|+++++++...++.+|..|+++++++++++..+||++++|++++++++|++..++|+
T Consensus 337 ~~~~~~~G~i~nl~s~Dv~~i~~~~~~~~~l~~~Pl~li~~~~lL~~~lG~~al~gv~vl~v~~pl~~~~~k~ 409 (1560)
T PTZ00243 337 AQPDMNTGRIINMMSTDVERINSFMQYCMYLWSSPMVLLLSILLLSRLVGWCALMAVAVLLVTLPLNGAIMKH 409 (1560)
T ss_pred CCCCCCHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6 6789999999999999999999889999999999999999999999999999999999999999998874
No 4
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=99.80 E-value=5e-18 Score=144.46 Aligned_cols=149 Identities=22% Similarity=0.442 Sum_probs=131.2
Q ss_pred hhchhHHHHHHHhhhcccCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhccCccccc
Q psy1504 3 LGITRPFVLGMFLSYFKVASTTATETAAVAGGALVLITFLNSLLNAHYNTMSSHIGLRMRAAVCSLVFRKCLKLDMVSTR 82 (153)
Q Consensus 3 ~~~~~p~~~~~ii~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~lr~~if~k~l~l~~~~~~ 82 (153)
+.+++|.+++.+++++.+.+ .+...++.++.+++++.++.+++..++.+...+.+.+++..++..+|+|+++++..+++
T Consensus 332 ~~~~~P~ll~~li~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ir~~L~~~iy~K~L~l~~~~~~ 410 (1522)
T TIGR00957 332 MMFIGPQILSLLIRFVNDPM-APDWQGYFYTGLLFVCACLQTLILHQYFHICFVSGMRIKTAVMGAVYRKALVITNSARK 410 (1522)
T ss_pred HHHHHHHHHHHHHHHhcCCC-cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhcC
Confidence 56789999999999875422 22233556666777778888888888888899999999999999999999999999999
Q ss_pred CCChhHHHHHHHhhHhHHHHHHHHhHHHhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhcc
Q psy1504 83 ETAPGQIVNLVSNDVSRFDLVTVTSHFMWSSPIISLIVTYIIYKDIGNAAFFGLAAAFCVIPLQLCSTYT 152 (153)
Q Consensus 83 ~~~~G~i~~~~t~D~~~i~~~~~~~~~~~~~~i~ii~~~~~l~~~lg~~~l~~~~~~~~~~~~~~~i~k~ 152 (153)
+.++|+++|++++|++++.+....++.+|..|+++++++++++..+|+++++|+.++++++|++..++|+
T Consensus 411 ~~~~G~i~nl~s~D~~~i~~~~~~~~~~~~~~~~i~~~~~ll~~~~g~~~l~~l~~~~~~~~~~~~~~~~ 480 (1522)
T TIGR00957 411 SSTVGEIVNLMSVDAQRFMDLATYINMIWSAPLQVILALYFLWLNLGPSVLAGVAVMVLMVPLNAVMAMK 480 (1522)
T ss_pred CCCHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999988889999999999999999999999999999999999999999887654
No 5
>PLN03130 ABC transporter C family member; Provisional
Probab=99.74 E-value=2.5e-16 Score=134.52 Aligned_cols=148 Identities=22% Similarity=0.413 Sum_probs=122.2
Q ss_pred hhchhHHHHHHHhhhcccCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhccCccccc
Q psy1504 3 LGITRPFVLGMFLSYFKVASTTATETAAVAGGALVLITFLNSLLNAHYNTMSSHIGLRMRAAVCSLVFRKCLKLDMVSTR 82 (153)
Q Consensus 3 ~~~~~p~~~~~ii~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~lr~~if~k~l~l~~~~~~ 82 (153)
+.+++|.+++.+++++.+++ .. ..++.++..+++..++...+...+.+...+.+.+++.+++..+|+|.++++...++
T Consensus 316 ~~~~~P~ll~~li~~v~~~~-~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ir~~L~~~i~~k~L~l~~~~~~ 393 (1622)
T PLN03130 316 SQFVGPLLLNLLLESMQNGE-PA-WIGYIYAFSIFVGVVLGVLCEAQYFQNVMRVGFRLRSTLVAAVFRKSLRLTHEGRK 393 (1622)
T ss_pred HHHHHHHHHHHHHHHHhcCC-cc-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhhcC
Confidence 45788999999999875322 11 22344444444444555555555666677999999999999999999999999999
Q ss_pred CCChhHHHHHHHhhHhHHHHHHHHhHHHhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhcc
Q psy1504 83 ETAPGQIVNLVSNDVSRFDLVTVTSHFMWSSPIISLIVTYIIYKDIGNAAFFGLAAAFCVIPLQLCSTYT 152 (153)
Q Consensus 83 ~~~~G~i~~~~t~D~~~i~~~~~~~~~~~~~~i~ii~~~~~l~~~lg~~~l~~~~~~~~~~~~~~~i~k~ 152 (153)
+.++|+++|++++|++++++....++.+|..|+++++++++++..+|+++++|++++++..|++..++|+
T Consensus 394 ~~~~G~ivnl~s~Dv~~i~~~~~~l~~l~~~pl~ii~~~~lL~~~lg~~~l~g~~v~~l~~~l~~~~~~~ 463 (1622)
T PLN03130 394 KFTSGKITNLMTTDAEALQQICQQLHTLWSAPFRIIIAMVLLYQQLGVASLIGSLMLVLMFPIQTFIISK 463 (1622)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999889999999999999999999999999999998888999998877654
No 6
>PLN03232 ABC transporter C family member; Provisional
Probab=99.74 E-value=2.5e-16 Score=134.08 Aligned_cols=148 Identities=22% Similarity=0.416 Sum_probs=125.7
Q ss_pred hhchhHHHHHHHhhhcccCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhccCccccc
Q psy1504 3 LGITRPFVLGMFLSYFKVASTTATETAAVAGGALVLITFLNSLLNAHYNTMSSHIGLRMRAAVCSLVFRKCLKLDMVSTR 82 (153)
Q Consensus 3 ~~~~~p~~~~~ii~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~lr~~if~k~l~l~~~~~~ 82 (153)
+.+++|.+++.+++++.++ +.. ..++.++.++++..+++.++...+.+...+.+.+++.+++..+|+|.++++...++
T Consensus 316 ~~~~~P~ll~~li~~~~~~-~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ir~~l~~~i~~k~l~l~~~~~~ 393 (1495)
T PLN03232 316 SQFVGPVILSHLLQSMQEG-DPA-WVGYVYAFLIFFGVTFGVLCESQYFQNVGRVGFRLRSTLVAAIFHKSLRLTHEARK 393 (1495)
T ss_pred HHHHHHHHHHHHHHHHhcC-Ccc-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhhcC
Confidence 4567899999999987542 212 23445555666667777777777777778999999999999999999999999999
Q ss_pred CCChhHHHHHHHhhHhHHHHHHHHhHHHhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhcc
Q psy1504 83 ETAPGQIVNLVSNDVSRFDLVTVTSHFMWSSPIISLIVTYIIYKDIGNAAFFGLAAAFCVIPLQLCSTYT 152 (153)
Q Consensus 83 ~~~~G~i~~~~t~D~~~i~~~~~~~~~~~~~~i~ii~~~~~l~~~lg~~~l~~~~~~~~~~~~~~~i~k~ 152 (153)
+.++|+++|++++|++++++....++.+|..|++++++++++++.+|+++++++++++++.|++..++|+
T Consensus 394 ~~~~G~i~n~ls~Dv~~i~~~~~~l~~l~~~p~~ii~~~~~l~~~lg~~~l~~~~v~~l~~pl~~~~~~~ 463 (1495)
T PLN03232 394 NFASGKVTNMITTDANALQQIAEQLHGLWSAPFRIIVSMVLLYQQLGVASLFGSLILFLLIPLQTLIVRK 463 (1495)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999998788999999999999999999999999999998888888888776653
No 7
>PF00664 ABC_membrane: ABC transporter transmembrane region; InterPro: IPR001140 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). A variety of ATP-binding transport proteins have a six transmembrane helical region. They are all integral membrane proteins involved in a variety of transport systems. Members of this family include; the cystic fibrosis transmembrane conductance regulator (CFTR), bacterial leukotoxin secretion ATP-binding protein, multidrug resistance proteins, the yeast leptomycin B resistance protein, the mammalian sulphonylurea receptor and antigen peptide transporter 2. Many of these proteins have two such regions.; GO: 0005524 ATP binding, 0042626 ATPase activity, coupled to transmembrane movement of substances, 0006810 transport, 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 3G61_B 3G5U_B 3G60_A 3B60_D 3QF4_B 2HYD_A 2ONJ_A 4A82_B 4AA3_A 2YL4_A.
Probab=99.70 E-value=4.1e-15 Score=105.11 Aligned_cols=149 Identities=17% Similarity=0.218 Sum_probs=109.4
Q ss_pred hhchhHHHHHHHhhhcccCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhccCccccc
Q psy1504 3 LGITRPFVLGMFLSYFKVASTTATETAAVAGGALVLITFLNSLLNAHYNTMSSHIGLRMRAAVCSLVFRKCLKLDMVSTR 82 (153)
Q Consensus 3 ~~~~~p~~~~~ii~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~lr~~if~k~l~l~~~~~~ 82 (153)
+....|.+.+.++|.+.+++.......+.+...+++...+.........+...+.+.+.+.++|.++++|.++.|..+++
T Consensus 14 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 93 (275)
T PF00664_consen 14 LSLLFPLLLGQIIDSLSSGNSDNNSSLISLAFLLIAIFLLIFLFSYIYFYLSSRISQRIRKDLRKRLFEKLLRLPYSYFD 93 (275)
T ss_dssp HHHHHHHHHHHHHHHCTTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Confidence 34568999999999865422221233344444444555666677777777788999999999999999999999999999
Q ss_pred CCChhHHHHHHHhhHhHHHHHHH-HhHHHhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhc
Q psy1504 83 ETAPGQIVNLVSNDVSRFDLVTV-TSHFMWSSPIISLIVTYIIYKDIGNAAFFGLAAAFCVIPLQLCSTY 151 (153)
Q Consensus 83 ~~~~G~i~~~~t~D~~~i~~~~~-~~~~~~~~~i~ii~~~~~l~~~lg~~~l~~~~~~~~~~~~~~~i~k 151 (153)
++++||++|++++|++++++... .+..+.......+++++.++..-.+.+++.+...++..++...+.|
T Consensus 94 ~~~~g~l~~~i~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~l~~l~~~~~~~~~~~~~~~ 163 (275)
T PF00664_consen 94 KNSSGELLSRITNDIEQIENFLSSSLFQIISSIISIIFSLILLFFISWKLALILLIILPLLFLISFIFSK 163 (275)
T ss_dssp HS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhcccccccccccccccccccccccccccccccchhhhhhhcccccccccccccchhhhhhHhhhhhhcc
Confidence 99999999999999999999985 5677777777777777777655444555555555555555555544
No 8
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=99.60 E-value=2e-13 Score=107.64 Aligned_cols=123 Identities=17% Similarity=0.185 Sum_probs=97.3
Q ss_pred hhchhHHHHHHHhhhcccCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhccCccccc
Q psy1504 3 LGITRPFVLGMFLSYFKVASTTATETAAVAGGALVLITFLNSLLNAHYNTMSSHIGLRMRAAVCSLVFRKCLKLDMVSTR 82 (153)
Q Consensus 3 ~~~~~p~~~~~ii~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~lr~~if~k~l~l~~~~~~ 82 (153)
+.+..|+++++++|.+...+ ......+.+...++++.++..++.+...+...+.+.++..++|..+|+|++++|..+++
T Consensus 37 ~~~~~~~~~~~~id~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~~~ 115 (588)
T PRK11174 37 LLIAQAWLLATILQALIIEN-IPREALLPPFILLILLFVLRALLAWLRERVGFKAGQHIRQQIRQQVLDKLQQLGPAWIQ 115 (588)
T ss_pred HHHHHHHHHHHHHHHHHhcC-CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhhc
Confidence 34578999999998753211 11122334444566677788889999999999999999999999999999999999999
Q ss_pred CCChhHHHHHHHhhHhHHHHHH-HHhHHHhHHHHHHHHHHHHHHH
Q psy1504 83 ETAPGQIVNLVSNDVSRFDLVT-VTSHFMWSSPIISLIVTYIIYK 126 (153)
Q Consensus 83 ~~~~G~i~~~~t~D~~~i~~~~-~~~~~~~~~~i~ii~~~~~l~~ 126 (153)
+.++|+++|++++|++++++.+ ..++.++...+..+++++.+++
T Consensus 116 ~~~~g~l~s~~~~dv~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~ 160 (588)
T PRK11174 116 GKPAGSWATLVLEQVEDMHDFYARYLPQMALAVLVPLLILIAVFP 160 (588)
T ss_pred cCCHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999998 4678877777766666665554
No 9
>KOG0058|consensus
Probab=99.57 E-value=2.6e-13 Score=105.94 Aligned_cols=134 Identities=13% Similarity=0.162 Sum_probs=110.9
Q ss_pred hchhHHHHHHHhhhcccCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhccCcccccC
Q psy1504 4 GITRPFVLGMFLSYFKVASTTATETAAVAGGALVLITFLNSLLNAHYNTMSSHIGLRMRAAVCSLVFRKCLKLDMVSTRE 83 (153)
Q Consensus 4 ~~~~p~~~~~ii~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~lr~~if~k~l~l~~~~~~~ 83 (153)
+...|..+++++|.+.. +.+.....-..+..+.++++.++++.....+.....+.++..++|.++|+++++....+||+
T Consensus 163 ~~~iP~~~G~~id~~~~-~~~~~~~~~~~~~~l~~l~~~~a~~~~~r~~~~~~a~~rv~~rlR~~lF~sil~QdiaFFD~ 241 (716)
T KOG0058|consen 163 NMFIPYYLGKLIDTISE-GDDSADALKRACTILLGLFLIGALANAIRGGLLQYAGERVVARLRTDLFRSLLRQDIAFFDE 241 (716)
T ss_pred cchhhHHHHHHHHHHHh-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcc
Confidence 46789999999998754 11122222245557778889999999999999999999999999999999999999999999
Q ss_pred CChhHHHHHHHhhHhHHHHHH-HHhHHHhHHHHHHHHHHHHHHH---HHhHHHHHHHHH
Q psy1504 84 TAPGQIVNLVSNDVSRFDLVT-VTSHFMWSSPIISLIVTYIIYK---DIGNAAFFGLAA 138 (153)
Q Consensus 84 ~~~G~i~~~~t~D~~~i~~~~-~~~~~~~~~~i~ii~~~~~l~~---~lg~~~l~~~~~ 138 (153)
+++||++||+++|+..+.+.+ ..+...+.+.++.+++..+|+. ++....++.+|.
T Consensus 242 nktGeL~SRLtsD~~~vs~svs~nls~~lR~~~~~~g~~~~M~~~S~~Ltlv~~i~~P~ 300 (716)
T KOG0058|consen 242 NKTGELISRLTSDTQIVSNSVSQNLSDGLRNLVQGFGGLGFMFSLSWRLTLVTLIVVPI 300 (716)
T ss_pred CCccHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhHHHHHHHHHHhcH
Confidence 999999999999999999999 4788889999999999888874 555555555553
No 10
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=99.55 E-value=1.4e-12 Score=102.59 Aligned_cols=127 Identities=16% Similarity=0.172 Sum_probs=96.1
Q ss_pred hhchhHHHHHHHhhhcccCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhccCccccc
Q psy1504 3 LGITRPFVLGMFLSYFKVASTTATETAAVAGGALVLITFLNSLLNAHYNTMSSHIGLRMRAAVCSLVFRKCLKLDMVSTR 82 (153)
Q Consensus 3 ~~~~~p~~~~~ii~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~lr~~if~k~l~l~~~~~~ 82 (153)
+.+..|.+++.++|.+..+. ......+.++..++++.++..++.+...+...+.+.+...++|..+|+|+++.|..+++
T Consensus 10 ~~~~~p~~~~~iid~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~~~~ 88 (569)
T PRK10789 10 LQLIPPKVVGIIVDGVTEQH-MTTGQILMWIGTMVLIAVVVYLLRYVWRVLLFGASYQLAVELREDFYRQLSRQHPEFYL 88 (569)
T ss_pred HHHHHHHHHHHHHHHhccCC-cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHc
Confidence 45678999999998764311 11222334454555666778888888888889999999999999999999999999999
Q ss_pred CCChhHHHHHHHhhHhHHHHHHH-HhHHHhHHHHHHHHHHHHHHHHHhH
Q psy1504 83 ETAPGQIVNLVSNDVSRFDLVTV-TSHFMWSSPIISLIVTYIIYKDIGN 130 (153)
Q Consensus 83 ~~~~G~i~~~~t~D~~~i~~~~~-~~~~~~~~~i~ii~~~~~l~~~lg~ 130 (153)
++++|++++++++|++.+++... .+..++..++..++++++++..++|
T Consensus 89 ~~~~g~i~srl~~Dv~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (569)
T PRK10789 89 RHRTGDLMARATNDVDRVVFAAGEGVLTLVDSLVMGCAVLIVMSTQISW 137 (569)
T ss_pred CCCHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 99999999999999999997763 5667766666665555555433333
No 11
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=99.53 E-value=2.4e-12 Score=100.38 Aligned_cols=134 Identities=13% Similarity=0.059 Sum_probs=97.3
Q ss_pred hhchhHHHHHHHhhhcccCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhccCccccc
Q psy1504 3 LGITRPFVLGMFLSYFKVASTTATETAAVAGGALVLITFLNSLLNAHYNTMSSHIGLRMRAAVCSLVFRKCLKLDMVSTR 82 (153)
Q Consensus 3 ~~~~~p~~~~~ii~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~lr~~if~k~l~l~~~~~~ 82 (153)
+.+..|.+++.++|.....+ ...........++++.+...++.+...+...+.+.++..++|..+|+|++++|..+++
T Consensus 28 ~~~~~~~~~~~~id~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~~~ 105 (529)
T TIGR02868 28 SAVALLGVSAWLISRAAEMP--PVLYLSVAAVAVRAFGIGRAVFRYLERLVGHDAALRSLGRLRVRVYDRLARLALAGRR 105 (529)
T ss_pred HHHHHHHHHHHHHHHHhhcc--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCccccc
Confidence 34567888888888654211 1111111122233455667888888889999999999999999999999999999999
Q ss_pred CCChhHHHHHHHhhHhHHHHHHH-HhHHHhHHHHHHHHHHHHHHH---HHhHHHHHHHHH
Q psy1504 83 ETAPGQIVNLVSNDVSRFDLVTV-TSHFMWSSPIISLIVTYIIYK---DIGNAAFFGLAA 138 (153)
Q Consensus 83 ~~~~G~i~~~~t~D~~~i~~~~~-~~~~~~~~~i~ii~~~~~l~~---~lg~~~l~~~~~ 138 (153)
+.++|++++++++|++.+++.+. .+..++...+..+++++++++ .++...++++++
T Consensus 106 ~~~~g~~~~~l~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~l~~l~~~~~ 165 (529)
T TIGR02868 106 RFQTGDLLGRLGADVDALQDLYVRVIVPLVVALVVGSAAVAAIALLSVPAALVLAAGLLL 165 (529)
T ss_pred cCChhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 99999999999999999999884 567777776666666665554 444444444443
No 12
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=99.52 E-value=3.6e-12 Score=99.45 Aligned_cols=134 Identities=16% Similarity=0.126 Sum_probs=102.3
Q ss_pred hhchhHHHHHHHhhhcccCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhccCccccc
Q psy1504 3 LGITRPFVLGMFLSYFKVASTTATETAAVAGGALVLITFLNSLLNAHYNTMSSHIGLRMRAAVCSLVFRKCLKLDMVSTR 82 (153)
Q Consensus 3 ~~~~~p~~~~~ii~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~lr~~if~k~l~l~~~~~~ 82 (153)
+.+..|++.++++|.+...+ ........+...+++..++..++.+...+...+.+.+...++|..+|+|++++|..+++
T Consensus 18 ~~~~~~~~~~~iid~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~l~~~~~~~~~ 96 (529)
T TIGR02857 18 LIIAQAWLLARVIDGLISAG-EPLAELLPALGALALAVLLRALLGWLGERAAARAAAAVKSQLRERLLAAVAALGPGWLQ 96 (529)
T ss_pred HHHHHHHHHHHHHHhhccCC-CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhc
Confidence 45678999999999763111 12223334445566677788889999999999999999999999999999999999999
Q ss_pred CCChhHHHHHHHhhHhHHHHHHH-HhHHHhHHHHHHHHHHHHHH---HHHhHHHHHHHH
Q psy1504 83 ETAPGQIVNLVSNDVSRFDLVTV-TSHFMWSSPIISLIVTYIIY---KDIGNAAFFGLA 137 (153)
Q Consensus 83 ~~~~G~i~~~~t~D~~~i~~~~~-~~~~~~~~~i~ii~~~~~l~---~~lg~~~l~~~~ 137 (153)
+.++|++++++++|++++++.+. .+..++...+..++++++++ +.++...+++++
T Consensus 97 ~~~~g~~~~~l~~di~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~l~~~~ 155 (529)
T TIGR02857 97 GRPSGELATLALEGVEALDGYFARYLPQLVLAVIIPLAILAAVFPADWISGLILLLTAP 155 (529)
T ss_pred cCChHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 99999999999999999999884 57777777766666666555 344444444443
No 13
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=99.50 E-value=5.9e-12 Score=99.12 Aligned_cols=135 Identities=16% Similarity=0.065 Sum_probs=99.5
Q ss_pred hhchhHHHHHHHhhhcccCccc-c-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhccCccc
Q psy1504 3 LGITRPFVLGMFLSYFKVASTT-A-TETAAVAGGALVLITFLNSLLNAHYNTMSSHIGLRMRAAVCSLVFRKCLKLDMVS 80 (153)
Q Consensus 3 ~~~~~p~~~~~ii~~~~~~~~~-~-~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~lr~~if~k~l~l~~~~ 80 (153)
+.+..|.+++.++|.....+.. . ..........+.++.++..++.+...+..++.+.++..++|..+|+|++++|..+
T Consensus 31 ~~l~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lR~~l~~~l~~~~~~~ 110 (574)
T PRK11160 31 ASIGLLTLSGWFLSASAVAGLAGLYSFNYMLPAAGVRGAAIGRTAGRYGERLVSHDATFRVLTHLRVFTFSKLLPLSPAG 110 (574)
T ss_pred HHHHHHHHHHHHHHHHHhccccchhhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccChHh
Confidence 4567888888888864211110 0 0111122334445667788899999999999999999999999999999999999
Q ss_pred ccCCChhHHHHHHHhhHhHHHHHH-HHhHHHhHHHHHHHHHHHHHHH---HHhHHHHHHHH
Q psy1504 81 TRETAPGQIVNLVSNDVSRFDLVT-VTSHFMWSSPIISLIVTYIIYK---DIGNAAFFGLA 137 (153)
Q Consensus 81 ~~~~~~G~i~~~~t~D~~~i~~~~-~~~~~~~~~~i~ii~~~~~l~~---~lg~~~l~~~~ 137 (153)
+++.++|++++++++|++.+++++ ..++.++...+..++++++|++ .++...+++++
T Consensus 111 ~~~~~~g~~~srl~~Dv~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~l~~~~~~~ 171 (574)
T PRK11160 111 LARYRQGDLLNRLVADVDTLDHLYLRLISPLVAALVVILVLTIGLSFFDLTLALTLGGILL 171 (574)
T ss_pred hccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999998 4677777777777666666654 44444434443
No 14
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=99.47 E-value=1.5e-11 Score=98.80 Aligned_cols=139 Identities=15% Similarity=0.135 Sum_probs=101.2
Q ss_pred hhchhHHHHHHHhhhcccCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhccCccccc
Q psy1504 3 LGITRPFVLGMFLSYFKVASTTATETAAVAGGALVLITFLNSLLNAHYNTMSSHIGLRMRAAVCSLVFRKCLKLDMVSTR 82 (153)
Q Consensus 3 ~~~~~p~~~~~ii~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~lr~~if~k~l~l~~~~~~ 82 (153)
+.++.|.+++.++|.+...+ +....+.+..++++..++..++.+...+...+.+.++..++|..+|+|++++|..+ +
T Consensus 162 ~~l~~p~~~~~iiD~~~~~~--~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~l~~~~-~ 238 (694)
T TIGR03375 162 LALASPLFVMNVYDRVVPNQ--AFETLWVLAIGVALAIVFDFVLKTLRSYFLDVAGKKADLILSAKLFERVLGLRMEA-R 238 (694)
T ss_pred HHHHHHHHHHHHHHHhhhcC--cHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccc-C
Confidence 45678999999999764322 22223334445555667788889999999999999999999999999999999998 7
Q ss_pred CCChhHHHHHHHhhHhHHHHHHH-HhHHHhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q psy1504 83 ETAPGQIVNLVSNDVSRFDLVTV-TSHFMWSSPIISLIVTYIIYKDIGNAAFFGLAAAFCVIPL 145 (153)
Q Consensus 83 ~~~~G~i~~~~t~D~~~i~~~~~-~~~~~~~~~i~ii~~~~~l~~~lg~~~l~~~~~~~~~~~~ 145 (153)
+.++|++++++ +|++.+++++. .+...+...+..++++++|++.-++.+++.+..+++...+
T Consensus 239 ~~~~G~~~~r~-~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~li~l~~~~l~~~~ 301 (694)
T TIGR03375 239 PASVGSFANQL-REFESVRDFFTSATLTALIDLPFALLFLLVIAIIGGPLVWVPLVAIPLILLP 301 (694)
T ss_pred CCChhHHHHHH-HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 88999999998 89999999884 5555656655566666666655455555444433333333
No 15
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=99.46 E-value=1.5e-11 Score=98.99 Aligned_cols=129 Identities=13% Similarity=0.088 Sum_probs=97.9
Q ss_pred hhchhHHHHHHHhhhcccCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhccCccccc
Q psy1504 3 LGITRPFVLGMFLSYFKVASTTATETAAVAGGALVLITFLNSLLNAHYNTMSSHIGLRMRAAVCSLVFRKCLKLDMVSTR 82 (153)
Q Consensus 3 ~~~~~p~~~~~ii~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~lr~~if~k~l~l~~~~~~ 82 (153)
+.+..|...++++|.+..+.+ ..........+.+..++..++.+...+.....+.++..++|..+|+|+++.+..+++
T Consensus 176 ~~~~~p~~~~~iid~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~~f~ 253 (711)
T TIGR00958 176 GEMFIPFYTGRVIDTLGGDKG--PPALASAIFFMCLLSIASSVSAGLRGGSFNYTMARINLRIREDLFRSLLRQDLGFFD 253 (711)
T ss_pred HHHHHHHHHHHHHHHHhcCCC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHc
Confidence 445789999999998753221 111222223344555667777777788888899999999999999999999999999
Q ss_pred CCChhHHHHHHHhhHhHHHHHH-HHhHHHhHHHHHHHHHHHHHHHHHhHHHH
Q psy1504 83 ETAPGQIVNLVSNDVSRFDLVT-VTSHFMWSSPIISLIVTYIIYKDIGNAAF 133 (153)
Q Consensus 83 ~~~~G~i~~~~t~D~~~i~~~~-~~~~~~~~~~i~ii~~~~~l~~~lg~~~l 133 (153)
++++|+++|++++|++.+++.+ ..+..++...+.+++++++++..-++.++
T Consensus 254 ~~~~G~i~srl~~Di~~i~~~~~~~~~~~l~~~~~~i~~~~~l~~~s~~l~l 305 (711)
T TIGR00958 254 ENKTGELTSRLSSDTQTMSRSLSLNVNVLLRNLVMLLGLLGFMLWLSPRLTM 305 (711)
T ss_pred CCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 9999999999999999999998 46777888888887777777654433333
No 16
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=99.46 E-value=1.7e-11 Score=98.41 Aligned_cols=134 Identities=16% Similarity=0.175 Sum_probs=100.4
Q ss_pred hhchhHHHHHHHhhhcccCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhccCccccc
Q psy1504 3 LGITRPFVLGMFLSYFKVASTTATETAAVAGGALVLITFLNSLLNAHYNTMSSHIGLRMRAAVCSLVFRKCLKLDMVSTR 82 (153)
Q Consensus 3 ~~~~~p~~~~~ii~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~lr~~if~k~l~l~~~~~~ 82 (153)
+.+..|...+.++|.+.... .....+.++..++++.++..++.+...+...+.+.++..++|..+|+|++++|..+++
T Consensus 151 ~~l~~p~~~~~iid~v~~~~--~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~~~~~~~~ 228 (686)
T TIGR03797 151 LGMLVPIATGILIGTAIPDA--DRSLLVQIALALLAAAVGAAAFQLAQSLAVLRLETRMDASLQAAVWDRLLRLPVSFFR 228 (686)
T ss_pred HHHHHHHHHHHHHHHhhhcC--ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHC
Confidence 45678999999999775311 2223334455566677778888999999999999999999999999999999999999
Q ss_pred CCChhHHHHHHHhhHhHHHHHHH-HhHHHhHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q psy1504 83 ETAPGQIVNLVSNDVSRFDLVTV-TSHFMWSSPIISLIVTYIIYKDIGNAAFFGLAAA 139 (153)
Q Consensus 83 ~~~~G~i~~~~t~D~~~i~~~~~-~~~~~~~~~i~ii~~~~~l~~~lg~~~l~~~~~~ 139 (153)
+.++|+++++++ |++.+++.+. .+...+.+.+..++++++++..-++.+++.+.+.
T Consensus 229 ~~~~g~~~~r~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~li~l~~~ 285 (686)
T TIGR03797 229 QYSTGDLASRAM-GISQIRRILSGSTLTTLLSGIFALLNLGLMFYYSWKLALVAVALA 285 (686)
T ss_pred CCChhHHHHHHh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999997 8999999884 4555555555555666666655444444444433
No 17
>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=99.45 E-value=2e-11 Score=98.01 Aligned_cols=127 Identities=11% Similarity=0.184 Sum_probs=95.5
Q ss_pred hhchhHHHHHHHhhhcccCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhccCccccc
Q psy1504 3 LGITRPFVLGMFLSYFKVASTTATETAAVAGGALVLITFLNSLLNAHYNTMSSHIGLRMRAAVCSLVFRKCLKLDMVSTR 82 (153)
Q Consensus 3 ~~~~~p~~~~~ii~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~lr~~if~k~l~l~~~~~~ 82 (153)
+.++.|.+++.++|.+.... +......++..++++.++..++.+...+...+.+.++..++|..+|+|++++|..+++
T Consensus 154 l~l~~p~~~~~iid~v~~~~--~~~~l~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~l~~l~~~~f~ 231 (694)
T TIGR01846 154 FALVTPLLFQVVIDKVLVHR--GLSTLSVLALAMLAVAIFEPALGGLRTYLFAHLTSRIDVELGARLYRHLLGLPLGYFE 231 (694)
T ss_pred HHHHHHHHHHHHHHHhhccC--ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHcC
Confidence 45678999999998774311 2223334444556666778888999999999999999999999999999999999999
Q ss_pred CCChhHHHHHHHhhHhHHHHHHH-HhHHHhHHHHHHHHHHHHHHHHHhHHH
Q psy1504 83 ETAPGQIVNLVSNDVSRFDLVTV-TSHFMWSSPIISLIVTYIIYKDIGNAA 132 (153)
Q Consensus 83 ~~~~G~i~~~~t~D~~~i~~~~~-~~~~~~~~~i~ii~~~~~l~~~lg~~~ 132 (153)
+.++|++++++ +|++.+++++. .+...+...+..++.+++++..-++.+
T Consensus 232 ~~~~g~~~~rl-~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~ 281 (694)
T TIGR01846 232 SRRVGDTVARV-RELEQIRNFLTGSALTVVLDLLFVVVFLAVMFFYSPTLT 281 (694)
T ss_pred CCCHHHHHHHh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999 69999999874 555655555444444555554433333
No 18
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=99.45 E-value=1.5e-11 Score=98.99 Aligned_cols=133 Identities=11% Similarity=0.084 Sum_probs=102.2
Q ss_pred hhchhHHHHHHHhhhcccCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhccCccccc
Q psy1504 3 LGITRPFVLGMFLSYFKVASTTATETAAVAGGALVLITFLNSLLNAHYNTMSSHIGLRMRAAVCSLVFRKCLKLDMVSTR 82 (153)
Q Consensus 3 ~~~~~p~~~~~ii~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~lr~~if~k~l~l~~~~~~ 82 (153)
+.++.|.+.+.++|.+...+ .....+.+..+++++.++..++.+...+...+.+.++..++|..+|+|++++|..+++
T Consensus 169 ~~l~~p~~~~~iid~v~~~~--~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~l~~~~~~ 246 (710)
T TIGR03796 169 PGLVIPAFSQIFVDEILVQG--RQDWLRPLLLGMGLTALLQGVLTWLQLYYLRRLQIKLAVGMSARFLWHILRLPVRFFA 246 (710)
T ss_pred HHHHHHHHHHHHHHHHhhcC--ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHc
Confidence 45678999999998764322 2222334444555666778888889999999999999999999999999999999999
Q ss_pred CCChhHHHHHHHhhHhHHHHHHH-HhHHHhHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q psy1504 83 ETAPGQIVNLVSNDVSRFDLVTV-TSHFMWSSPIISLIVTYIIYKDIGNAAFFGLAA 138 (153)
Q Consensus 83 ~~~~G~i~~~~t~D~~~i~~~~~-~~~~~~~~~i~ii~~~~~l~~~lg~~~l~~~~~ 138 (153)
+.++|++++++++| +.+++++. .+...+.+.+.++++++++++.-++.+++.+..
T Consensus 247 ~~~~g~~~~r~~~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~li~l~~ 302 (710)
T TIGR03796 247 QRHAGDIASRVQLN-DQVAEFLSGQLATTALDAVMLVFYALLMLLYDPVLTLIGIAF 302 (710)
T ss_pred CCcccHHHHHhhhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999998 68998874 567777777777777777776544444444433
No 19
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=99.44 E-value=2.5e-11 Score=97.71 Aligned_cols=124 Identities=15% Similarity=0.166 Sum_probs=93.7
Q ss_pred hhchhHHHHHHHhhhcccCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhccCccccc
Q psy1504 3 LGITRPFVLGMFLSYFKVASTTATETAAVAGGALVLITFLNSLLNAHYNTMSSHIGLRMRAAVCSLVFRKCLKLDMVSTR 82 (153)
Q Consensus 3 ~~~~~p~~~~~ii~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~lr~~if~k~l~l~~~~~~ 82 (153)
+.++.|..++.++|.+...+ .....+.++..+++..++..++.+...+...+.+.++..++|..+|+|++++|..+++
T Consensus 171 ~~l~~p~~~~~iiD~v~~~~--~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~l~~~~f~ 248 (708)
T TIGR01193 171 ISIAGSYYLQKIIDTYIPHK--MMGTLGIISIGLIIAYIIQQILSYIQIFLLNVLGQRLSIDIILSYIKHLFELPMSFFS 248 (708)
T ss_pred HHHHHHHHHHHHHHHhhccC--ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHhC
Confidence 45678999999998764311 2222333444455666778888888899999999999999999999999999999999
Q ss_pred CCChhHHHHHHHhhHhHHHHHHH-HhHHHhHHHHHHHHHHHHHHHHHh
Q psy1504 83 ETAPGQIVNLVSNDVSRFDLVTV-TSHFMWSSPIISLIVTYIIYKDIG 129 (153)
Q Consensus 83 ~~~~G~i~~~~t~D~~~i~~~~~-~~~~~~~~~i~ii~~~~~l~~~lg 129 (153)
+.++|+++++++ |.+.++++.. .....+...+..+++++++++.-+
T Consensus 249 ~~~~G~~~~r~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 295 (708)
T TIGR01193 249 TRRTGEIVSRFT-DASSIIDALASTILSLFLDMWILVIVGLFLVRQNM 295 (708)
T ss_pred CCchhHHHHHhh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 999999999998 9999999874 455555555555555555554333
No 20
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=99.43 E-value=3.2e-11 Score=96.21 Aligned_cols=133 Identities=17% Similarity=0.269 Sum_probs=108.2
Q ss_pred hhchhHHHHHHHhhhcccCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhccCccccc
Q psy1504 3 LGITRPFVLGMFLSYFKVASTTATETAAVAGGALVLITFLNSLLNAHYNTMSSHIGLRMRAAVCSLVFRKCLKLDMVSTR 82 (153)
Q Consensus 3 ~~~~~p~~~~~ii~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~lr~~if~k~l~l~~~~~~ 82 (153)
++++.|.+.+.++|.+...+ +.........++++..+.+.++.....+...+.+.++..++...+|+|++++|..||+
T Consensus 169 ~~l~~p~~~q~viD~Vl~~~--~~~tL~vl~ig~~~~~l~~~~l~~lr~~~~~~~~~rld~~l~~~~~~hll~Lpl~~f~ 246 (709)
T COG2274 169 LALATPLFSQIVIDKVLPDA--SRSTLTVLAIGLLLAALFEALLRLLRTYLIAHLGKRLDLELSGRFFRHLLRLPLSYFE 246 (709)
T ss_pred HHHHHHHHHHHHHHhhhccC--chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHcCcHHHcc
Confidence 56789999999999885422 2333445666777888899999999999999999999999999999999999999999
Q ss_pred CCChhHHHHHHHhhHhHHHHHHH-HhHHHhHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q psy1504 83 ETAPGQIVNLVSNDVSRFDLVTV-TSHFMWSSPIISLIVTYIIYKDIGNAAFFGLAA 138 (153)
Q Consensus 83 ~~~~G~i~~~~t~D~~~i~~~~~-~~~~~~~~~i~ii~~~~~l~~~lg~~~l~~~~~ 138 (153)
+.++||+++|+. |.+++.++.. .....+.+.+..++..++|++.-++-+++++..
T Consensus 247 ~r~~Ge~~sR~~-el~~Ir~flt~~~l~~iiD~~~~~i~l~vm~~ys~~L~li~l~~ 302 (709)
T COG2274 247 KRSVGEIISRVR-ELEQIREFLTGSILTLIIDLLFALIFLAVMFLYSWKLTLIVLAA 302 (709)
T ss_pred CCChhhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999986 5999999995 577777777777777777776655555544443
No 21
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=99.42 E-value=5e-11 Score=94.21 Aligned_cols=124 Identities=12% Similarity=0.151 Sum_probs=93.2
Q ss_pred hhchhHHHHHHHhhhcccCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhccCccccc
Q psy1504 3 LGITRPFVLGMFLSYFKVASTTATETAAVAGGALVLITFLNSLLNAHYNTMSSHIGLRMRAAVCSLVFRKCLKLDMVSTR 82 (153)
Q Consensus 3 ~~~~~p~~~~~ii~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~lr~~if~k~l~l~~~~~~ 82 (153)
+.+..|..+++++|.+.............++..+++..++..++.+...+...+.+.+...++|..+|+|+++.|..+++
T Consensus 38 ~~~~~p~~~~~iid~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~l~~~~~~~~~ 117 (592)
T PRK10790 38 AEVSGPLLISYFIDNMVAKGNLPLGLVAGLAAAYVGLQLLAAGLHYAQSLLFNRAAVGVVQQLRTDVMDAALRQPLSAFD 117 (592)
T ss_pred HHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHhC
Confidence 34567888888988764211111111122333445556677788888899999999999999999999999999999999
Q ss_pred CCChhHHHHHHHhhHhHHHHHH-HHhHHHhHHHHHHHHHHHHHHH
Q psy1504 83 ETAPGQIVNLVSNDVSRFDLVT-VTSHFMWSSPIISLIVTYIIYK 126 (153)
Q Consensus 83 ~~~~G~i~~~~t~D~~~i~~~~-~~~~~~~~~~i~ii~~~~~l~~ 126 (153)
+.++|++++++++|++.+++.+ ..+..++.....+++++++++.
T Consensus 118 ~~~~g~~~~~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (592)
T PRK10790 118 TQPVGQLISRVTNDTEVIRDLYVTVVATVLRSAALIGAMLVAMFS 162 (592)
T ss_pred CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999988 4567776666666666555554
No 22
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=99.41 E-value=5.3e-11 Score=93.95 Aligned_cols=119 Identities=7% Similarity=0.092 Sum_probs=86.5
Q ss_pred hhchhHHHHHHHhhhcccCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhccCccccc
Q psy1504 3 LGITRPFVLGMFLSYFKVASTTATETAAVAGGALVLITFLNSLLNAHYNTMSSHIGLRMRAAVCSLVFRKCLKLDMVSTR 82 (153)
Q Consensus 3 ~~~~~p~~~~~ii~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~lr~~if~k~l~l~~~~~~ 82 (153)
+.+..|++.++++|.+..++ .. .......++..+...+..+...+...+...+++.++|..+|+|++++|..+++
T Consensus 34 ~~~~~p~~~~~iid~~~~~~--~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~l~~l~~~~~~ 108 (585)
T TIGR01192 34 ITIAEPILFGRIIDAISSKS--DV---LPTLALWAGFGVFNTIAYVLVAREADRLAHGRRATLLTEAFGRIISMPLSWHQ 108 (585)
T ss_pred HHHHHHHHHHHHHHHHhccc--cH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHhC
Confidence 44678999999998764311 11 11111222334455566666677777888888889999999999999999999
Q ss_pred CCChhHHHHHHHhhHhHHHHHHH-HhHHHhHHHHHHHHHHHHHHH
Q psy1504 83 ETAPGQIVNLVSNDVSRFDLVTV-TSHFMWSSPIISLIVTYIIYK 126 (153)
Q Consensus 83 ~~~~G~i~~~~t~D~~~i~~~~~-~~~~~~~~~i~ii~~~~~l~~ 126 (153)
++++|++++++++|++.+++.+. .+...+..++.+++++++++.
T Consensus 109 ~~~~g~~~s~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~ 153 (585)
T TIGR01192 109 QRGTSNALHTLLRATETLFGLWLEFMRQHLATFVALFLLIPTAFA 153 (585)
T ss_pred CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999998874 566666666666655555543
No 23
>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter. This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.
Probab=99.41 E-value=3.2e-11 Score=94.66 Aligned_cols=89 Identities=10% Similarity=0.111 Sum_probs=75.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhccCcccccCCChhHHHHHHHhhHhHHHHHHHHhHHHhHHHHHHH
Q psy1504 39 ITFLNSLLNAHYNTMSSHIGLRMRAAVCSLVFRKCLKLDMVSTRETAPGQIVNLVSNDVSRFDLVTVTSHFMWSSPIISL 118 (153)
Q Consensus 39 ~~l~~~~~~~~~~~~~~~~~~~~~~~lr~~if~k~l~l~~~~~~~~~~G~i~~~~t~D~~~i~~~~~~~~~~~~~~i~ii 118 (153)
..++..++.+...+..++.+.++..++|..+|+|++++|..+++++++|++++++++|++.++++...+..++...+..+
T Consensus 62 ~~~~~~~~~~~~~~~~~~~~~~~~~~lR~~l~~~l~~~~~~~~~~~~~G~l~srl~~Dv~~i~~~~~~~~~~~~~~~~~~ 141 (555)
T TIGR01194 62 LCLLALLFRIGADIFPAYAGMHIIANLRIALCEKILGAPIEEIDRRGAHNLIPLLTHDIDQINAFLFIFPPIAIALAIFF 141 (555)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHhcCcchhhHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556677888888999999999999999999999999999999999999999999999999998855666666666666
Q ss_pred HHHHHHHHH
Q psy1504 119 IVTYIIYKD 127 (153)
Q Consensus 119 ~~~~~l~~~ 127 (153)
++++++++.
T Consensus 142 ~~~~~l~~~ 150 (555)
T TIGR01194 142 FCIAYLAYL 150 (555)
T ss_pred HHHHHHHHH
Confidence 666655543
No 24
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=99.38 E-value=1.2e-10 Score=91.78 Aligned_cols=133 Identities=8% Similarity=-0.004 Sum_probs=101.1
Q ss_pred hchhHHHHHHHhhhcccCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhccCcccccC
Q psy1504 4 GITRPFVLGMFLSYFKVASTTATETAAVAGGALVLITFLNSLLNAHYNTMSSHIGLRMRAAVCSLVFRKCLKLDMVSTRE 83 (153)
Q Consensus 4 ~~~~p~~~~~ii~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~lr~~if~k~l~l~~~~~~~ 83 (153)
....|...+.+++.....+ ........+..+++..++..++.+...+...+.+.++...+|..+|+|+.+.|..++++
T Consensus 30 ~~~~~~~~~~~i~~~~~~~--~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~~~~~~~~~~~~ 107 (571)
T TIGR02203 30 ESTLAALLKPLLDDGFGGR--DRSVLWWVPLVVIGLAVLRGICSFVSTYLLSWVSNKVVRDIRVRMFEKLLGLPVSFFDR 107 (571)
T ss_pred HHHHHHHHHHHHhhhhccC--chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHhCC
Confidence 3456777777777543211 11222233444566777888888999999999999999999999999999999999999
Q ss_pred CChhHHHHHHHhhHhHHHHHH-HHhHHHhHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q psy1504 84 TAPGQIVNLVSNDVSRFDLVT-VTSHFMWSSPIISLIVTYIIYKDIGNAAFFGLAA 138 (153)
Q Consensus 84 ~~~G~i~~~~t~D~~~i~~~~-~~~~~~~~~~i~ii~~~~~l~~~lg~~~l~~~~~ 138 (153)
.+.|++.+++++|++++++.+ ..+..++...+.++++++++++.-++.+++.++.
T Consensus 108 ~~~g~~~~~l~~di~~i~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~l~~i~l~~ 163 (571)
T TIGR02203 108 QPTGTLLSRITFDSEQVASAATDAFIVLVRETLTVIGLFIVLLYYSWQLTLIVVVM 163 (571)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 999999999999999999988 4677778888888888877776544444444333
No 25
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=99.37 E-value=1.5e-10 Score=91.28 Aligned_cols=123 Identities=11% Similarity=0.165 Sum_probs=92.9
Q ss_pred hhchhHHHHHHHhhhcccCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhccCccccc
Q psy1504 3 LGITRPFVLGMFLSYFKVASTTATETAAVAGGALVLITFLNSLLNAHYNTMSSHIGLRMRAAVCSLVFRKCLKLDMVSTR 82 (153)
Q Consensus 3 ~~~~~p~~~~~ii~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~lr~~if~k~l~l~~~~~~ 82 (153)
+.+..|.+.+.++|.+.... +......+....+++.++..+..+...+...+.+.++..++|..+|+|+.+.|..+++
T Consensus 33 ~~~~~~~~~~~iid~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~l~~~~~~~~~ 110 (576)
T TIGR02204 33 ATLSLPYAVRLMIDHGFSKD--SSGLLNRYFAFLLVVALVLALGTAARFYLVTWLGERVVADIRRAVFAHLISLSPSFFD 110 (576)
T ss_pred HHHHHHHHHHHHhHhhcccc--cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHc
Confidence 34567888888888743211 1122223333444555666777778888899999999999999999999999999999
Q ss_pred CCChhHHHHHHHhhHhHHHHHH-HHhHHHhHHHHHHHHHHHHHHHH
Q psy1504 83 ETAPGQIVNLVSNDVSRFDLVT-VTSHFMWSSPIISLIVTYIIYKD 127 (153)
Q Consensus 83 ~~~~G~i~~~~t~D~~~i~~~~-~~~~~~~~~~i~ii~~~~~l~~~ 127 (153)
+.+.|++++++++|++++++.. ..+..++.+.+.+++++++++..
T Consensus 111 ~~~~g~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (576)
T TIGR02204 111 KNRSGEVVSRLTTDTTLLQSVIGSSLSMALRNALMCIGGLIMMFIT 156 (576)
T ss_pred cCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999987 45677777777777666666543
No 26
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=99.37 E-value=1.5e-10 Score=91.43 Aligned_cols=131 Identities=5% Similarity=-0.041 Sum_probs=97.6
Q ss_pred chhHHHHHHHhhhcccCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhccCcccccCC
Q psy1504 5 ITRPFVLGMFLSYFKVASTTATETAAVAGGALVLITFLNSLLNAHYNTMSSHIGLRMRAAVCSLVFRKCLKLDMVSTRET 84 (153)
Q Consensus 5 ~~~p~~~~~ii~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~lr~~if~k~l~l~~~~~~~~ 84 (153)
...|.+++.++|.... ++ ...........++++.++..++.+...+...+.+.+...++|..+|+|+.++|..++++.
T Consensus 42 ~~~~~~~~~~id~~~~-~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~l~~~~~~~~~~~ 119 (582)
T PRK11176 42 TFMLSLLKPLLDDGFG-KA-DRSVLKWMPLVVIGLMILRGITSFISSYCISWVSGKVVMTMRRRLFGHMMGMPVSFFDKQ 119 (582)
T ss_pred HHHHHHHHHHHHHHhc-cC-chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHhCCC
Confidence 4567777777776542 11 111112222334446667778888888888899999999999999999999999999999
Q ss_pred ChhHHHHHHHhhHhHHHHHH-HHhHHHhHHHHHHHHHHHHHHHHHhHHHHHHHH
Q psy1504 85 APGQIVNLVSNDVSRFDLVT-VTSHFMWSSPIISLIVTYIIYKDIGNAAFFGLA 137 (153)
Q Consensus 85 ~~G~i~~~~t~D~~~i~~~~-~~~~~~~~~~i~ii~~~~~l~~~lg~~~l~~~~ 137 (153)
+.|++++++++|++.+++.. ..+..++..++.++++++++++.-++.+++.+.
T Consensus 120 ~~g~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~l~~l~ 173 (582)
T PRK11176 120 STGTLLSRITYDSEQVASSSSGALITVVREGASIIGLFIMMFYYSWQLSLILIV 173 (582)
T ss_pred CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999987 567888888888888887777654444444433
No 27
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional
Probab=99.37 E-value=8e-11 Score=92.31 Aligned_cols=96 Identities=8% Similarity=0.022 Sum_probs=78.5
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhccCcccccCCChhHHHHHHHhhHhHHHHHHHHhHHHhHHHHHHHHHHHH
Q psy1504 44 SLLNAHYNTMSSHIGLRMRAAVCSLVFRKCLKLDMVSTRETAPGQIVNLVSNDVSRFDLVTVTSHFMWSSPIISLIVTYI 123 (153)
Q Consensus 44 ~~~~~~~~~~~~~~~~~~~~~lr~~if~k~l~l~~~~~~~~~~G~i~~~~t~D~~~i~~~~~~~~~~~~~~i~ii~~~~~ 123 (153)
.+..+...+...+.+.++..++|..+|+|++++|..+++++++|+++|++++|++.++..+..++.++.+.+..++++++
T Consensus 62 ~~~~~~~~~~~~~~~~~~~~~lR~~l~~~ll~~~~~~~~~~~~g~~lsrl~~dv~~i~~~~~~l~~~~~~~~~~i~~~~~ 141 (547)
T PRK10522 62 MAVTLGSQLALTTLGHHFVYRLRSEFIKRILDTHVERIEQLGSASLLASLTSDVRNITIAFVRLPELVQGIILTLGSAAY 141 (547)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhccCccchHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566777888889999999999999999999999999999999999999999999998765577778888888888877
Q ss_pred HHHHHhHHHHHHHHHH
Q psy1504 124 IYKDIGNAAFFGLAAA 139 (153)
Q Consensus 124 l~~~lg~~~l~~~~~~ 139 (153)
+++.-++.+++.+..+
T Consensus 142 l~~~~~~l~li~l~~~ 157 (547)
T PRK10522 142 LAWLSPKMLLVTAIWM 157 (547)
T ss_pred HHHHhHHHHHHHHHHH
Confidence 7765444444444433
No 28
>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei.
Probab=99.33 E-value=7.8e-11 Score=94.09 Aligned_cols=148 Identities=12% Similarity=0.022 Sum_probs=107.0
Q ss_pred hhchhHHHHHHHhhhcccCcccchHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhccCcccc
Q psy1504 3 LGITRPFVLGMFLSYFKVASTTATET-AAVAGGALVLITFLNSLLNAHYNTMSSHIGLRMRAAVCSLVFRKCLKLDMVST 81 (153)
Q Consensus 3 ~~~~~p~~~~~ii~~~~~~~~~~~~~-~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~lr~~if~k~l~l~~~~~ 81 (153)
+++..|.+.+.++|.+.+++...... .+.+++.+++..++..+..+...+...+.+.++..++++..|+|..+.+..++
T Consensus 111 ~~l~~~~l~~~iid~l~~~~~~~f~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~l~~~~~~~~~~~~~~~~ 190 (659)
T TIGR00954 111 LSVYVATLDGQIESSIVRRSPRNFAWILFKWFLIAPPASFINSAIKYLLKELKLRFRVRLTRYLYSKYLSGFTFYKVSNL 190 (659)
T ss_pred HHHHHHHHhhHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCceEEeccC
Confidence 45667888888888775322111111 22344455566777888888888888899999999999999999999999999
Q ss_pred cCCChhHHHHHHHhhHhHHHHHHH-HhHHHhHHHHHHHHHHHHHHHHHhHHHHHH-HHHHHHHHHHHHhhhc
Q psy1504 82 RETAPGQIVNLVSNDVSRFDLVTV-TSHFMWSSPIISLIVTYIIYKDIGNAAFFG-LAAAFCVIPLQLCSTY 151 (153)
Q Consensus 82 ~~~~~G~i~~~~t~D~~~i~~~~~-~~~~~~~~~i~ii~~~~~l~~~lg~~~l~~-~~~~~~~~~~~~~i~k 151 (153)
++ ++|++++++++|++.+++.+. .+..++..++.++++.+.++..++|...+. +...++...+...+.+
T Consensus 191 d~-~~g~~~srlt~Dv~~i~~~~~~~~~~l~~~~~~ii~~~~~L~~~~~~~l~l~~l~~~~l~~~i~~~~~~ 261 (659)
T TIGR00954 191 DS-RIQNPDQLLTQDVEKFCDSVVELYSNLTKPILDVILYSFKLLTALGSVGPAGLFAYLFATGVVLTKLRP 261 (659)
T ss_pred CC-CCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHcc
Confidence 87 889999999999999999985 578888888888888888887677644333 2233333444344433
No 29
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=99.30 E-value=7.5e-10 Score=85.15 Aligned_cols=145 Identities=13% Similarity=0.103 Sum_probs=117.5
Q ss_pred hhHHHHHHHhhhcccCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhccCcccccCCC
Q psy1504 6 TRPFVLGMFLSYFKVASTTATETAAVAGGALVLITFLNSLLNAHYNTMSSHIGLRMRAAVCSLVFRKCLKLDMVSTRETA 85 (153)
Q Consensus 6 ~~p~~~~~ii~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~lr~~if~k~l~l~~~~~~~~~ 85 (153)
.+..++...++.+..+ +. ....+.+...++++.+++++..........+.+.+++.++|+.+++|+.++++.+.++.+
T Consensus 18 ~qa~llA~~l~~l~~~-~~-~~~l~~~~~~l~~~~~lRa~l~~~~~~~~~~aa~~~~~~LR~~~l~~l~~~gp~~~~~~~ 95 (559)
T COG4988 18 AQAALLADILTKLIEG-QL-FQSLLPLLILLLIALVLRAFLAWLRERLGYRAAAKVRASLRQLVLDKLAKLGPAFIAQKP 95 (559)
T ss_pred HHHHHHHHHHHHHHhc-cc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhcCCC
Confidence 4455555566555432 11 233445666788889999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHhhHhHHHHHHH-HhHHHhH---HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhcc
Q psy1504 86 PGQIVNLVSNDVSRFDLVTV-TSHFMWS---SPIISLIVTYIIYKDIGNAAFFGLAAAFCVIPLQLCSTYT 152 (153)
Q Consensus 86 ~G~i~~~~t~D~~~i~~~~~-~~~~~~~---~~i~ii~~~~~l~~~lg~~~l~~~~~~~~~~~~~~~i~k~ 152 (153)
+|+..+.++..+|+++.++. ++|++.. .|+.++++++...|.-|...+++.|.+++++.+-...+|+
T Consensus 96 ~g~~atl~~egve~l~~Y~~ryLPq~~~~~ivp~~i~i~v~~~~w~aalIllit~PlIPlfMilvg~~a~~ 166 (559)
T COG4988 96 AGSAATLALEGIEQLEPYYARYLPQMFLSAIVPLLILIAIFFFNWAAALILLITAPLIPLFMILVGLAAKD 166 (559)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 99999999999999999994 7888764 4788888888888888888888888888887766555543
No 30
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=99.29 E-value=5.7e-10 Score=95.53 Aligned_cols=123 Identities=11% Similarity=0.072 Sum_probs=94.4
Q ss_pred hchhHHHHHHHhhhcccCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhccCcccccC
Q psy1504 4 GITRPFVLGMFLSYFKVASTTATETAAVAGGALVLITFLNSLLNAHYNTMSSHIGLRMRAAVCSLVFRKCLKLDMVSTRE 83 (153)
Q Consensus 4 ~~~~p~~~~~ii~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~lr~~if~k~l~l~~~~~~~ 83 (153)
..+.|++.+.+++.+..... .......++..++++.++..++.+...|...+.+.++..++|..+|+|+++.+..+|++
T Consensus 841 ~~~~~~~~~~~i~~~~~~~~-~~~~~~~~~l~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~lR~~lf~~ll~~~~~~fd~ 919 (1466)
T PTZ00265 841 YPVFALLYAKYVSTLFDFAN-LEANSNKYSLYILVIAIAMFISETLKNYYNNVIGEKVEKTMKRRLFENILYQEISFFDQ 919 (1466)
T ss_pred HHHHHHHHHHHHHHHhcchH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHhCC
Confidence 45677888888875432111 11123345556666677788888889999999999999999999999999999999985
Q ss_pred --CChhHHHHHHHhhHhHHHHHH-HHhHHHhHHHHHHHHHHHHHHHH
Q psy1504 84 --TAPGQIVNLVSNDVSRFDLVT-VTSHFMWSSPIISLIVTYIIYKD 127 (153)
Q Consensus 84 --~~~G~i~~~~t~D~~~i~~~~-~~~~~~~~~~i~ii~~~~~l~~~ 127 (153)
+++|++++++++|++.+++.. ..+..++..++.++++++++++.
T Consensus 920 ~~~~~G~l~srl~~Dv~~l~~~~~~~l~~~~~~i~~~i~~~~~~~~~ 966 (1466)
T PTZ00265 920 DKHAPGLLSAHINRDVHLLKTGLVNNIVIFTHFIVLFLVSMVMSFYF 966 (1466)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 889999999999999999987 45677777777777766665543
No 31
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=99.29 E-value=5.4e-10 Score=95.69 Aligned_cols=127 Identities=7% Similarity=-0.045 Sum_probs=98.4
Q ss_pred chhHHHHHHHhhhcccCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhccCcccccCC
Q psy1504 5 ITRPFVLGMFLSYFKVASTTATETAAVAGGALVLITFLNSLLNAHYNTMSSHIGLRMRAAVCSLVFRKCLKLDMVSTRET 84 (153)
Q Consensus 5 ~~~p~~~~~ii~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~lr~~if~k~l~l~~~~~~~~ 84 (153)
...|.+.+.++|.+..++ .. ..++..++++.++..++.+...+.+.+.+.++..++|..+|+|+++++..++++.
T Consensus 77 p~~~~i~g~iid~~~~~~--~~---~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~lR~~~~~~ll~~~~~~fd~~ 151 (1466)
T PTZ00265 77 PFFVSVFGVIMKNMNLGE--NV---NDIIFSLVLIGIFQFILSFISSFCMDVVTTKILKTLKLEFLKSVFYQDGQFHDNN 151 (1466)
T ss_pred HHHHHHHHHHHHHHhccc--hH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHcCC
Confidence 456777888888653211 11 1223345566677888899999999999999999999999999999999999999
Q ss_pred ChhHHHHHHHhhHhHHHHHH-HHhHHHhHHHHHHHHHHHHHHHHHhHHHHHHH
Q psy1504 85 APGQIVNLVSNDVSRFDLVT-VTSHFMWSSPIISLIVTYIIYKDIGNAAFFGL 136 (153)
Q Consensus 85 ~~G~i~~~~t~D~~~i~~~~-~~~~~~~~~~i~ii~~~~~l~~~lg~~~l~~~ 136 (153)
+.|++.+++++|++.+++.+ ..+..++..++.+++++++++..-+..+++.+
T Consensus 152 ~~~~l~s~l~~d~~~i~~~i~~~~~~~~~~~~~~i~~~i~~~~~sw~Lalv~l 204 (1466)
T PTZ00265 152 PGSKLTSDLDFYLEQVNAGIGTKFITIFTYASAFLGLYIWSLFKNARLTLCIT 204 (1466)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 99999999999999999998 46788888888888888777654333343333
No 32
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=99.26 E-value=1.4e-09 Score=85.97 Aligned_cols=119 Identities=9% Similarity=0.078 Sum_probs=82.1
Q ss_pred hhchhHHHHHHHhhhcccCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhccCccccc
Q psy1504 3 LGITRPFVLGMFLSYFKVASTTATETAAVAGGALVLITFLNSLLNAHYNTMSSHIGLRMRAAVCSLVFRKCLKLDMVSTR 82 (153)
Q Consensus 3 ~~~~~p~~~~~ii~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~lr~~if~k~l~l~~~~~~ 82 (153)
+.+..|++++.++|.+... .. .......+++..+...+..+...+...+...+.+..++..+|+|+.++|..+++
T Consensus 34 ~~~~~~~~~~~iid~~~~~--~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~ 108 (588)
T PRK13657 34 ATFAEPILFGRIIDAISGK--GD---IFPLLAAWAGFGLFNIIAGVLVARHADRLAHRRRLAVLTEYFERIIQLPLAWHS 108 (588)
T ss_pred HHHHHHHHHHHHHHHhccc--cc---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHC
Confidence 4567888888888876531 11 111122222333444455555666667777888888889999999999999999
Q ss_pred CCChhHHHHHHHhhHhHHHHHH-HHhHHHhHHHHHHHHHHHHHHH
Q psy1504 83 ETAPGQIVNLVSNDVSRFDLVT-VTSHFMWSSPIISLIVTYIIYK 126 (153)
Q Consensus 83 ~~~~G~i~~~~t~D~~~i~~~~-~~~~~~~~~~i~ii~~~~~l~~ 126 (153)
+.+.|++++++++|++++.+.. ..+.......+..++.++++++
T Consensus 109 ~~~~g~~~~~~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (588)
T PRK13657 109 QRGSGRALHTLLRGTDALFGLWLEFMREHLATLVALVVLLPLALF 153 (588)
T ss_pred cCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999998876 3455655555544444444443
No 33
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=99.24 E-value=2.1e-09 Score=84.74 Aligned_cols=131 Identities=17% Similarity=0.278 Sum_probs=96.0
Q ss_pred hhchhHHHHHHHhhhcccCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhccCccccc
Q psy1504 3 LGITRPFVLGMFLSYFKVASTTATETAAVAGGALVLITFLNSLLNAHYNTMSSHIGLRMRAAVCSLVFRKCLKLDMVSTR 82 (153)
Q Consensus 3 ~~~~~p~~~~~ii~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~lr~~if~k~l~l~~~~~~ 82 (153)
+....|.+++.++|.+.. .......+...+++..++..++.+...+...+.+.+...++|..+|+|++++|..+++
T Consensus 29 ~~~~~~~~~~~~i~~~~~----~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~lr~~~~~~l~~~~~~~~~ 104 (567)
T COG1132 29 LSLLLPLLIGRIIDALLA----DLGELLELLLLLLLLALLGGVLRALQSYLGSRLGQKIVADLRRDLFEKLLRLPLSFFD 104 (567)
T ss_pred HHHHHHHHHHHHHHHhhh----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHhC
Confidence 456778888888887641 1122233334455555677788888888888888999999999999999999999999
Q ss_pred CCChhHHHHHHHhhHhHHHHHHHHh-HHHhHHHHHHHHHHHHHHH---HHhHHHHHHHH
Q psy1504 83 ETAPGQIVNLVSNDVSRFDLVTVTS-HFMWSSPIISLIVTYIIYK---DIGNAAFFGLA 137 (153)
Q Consensus 83 ~~~~G~i~~~~t~D~~~i~~~~~~~-~~~~~~~i~ii~~~~~l~~---~lg~~~l~~~~ 137 (153)
++++|++++++++|++.+++.+... ..+...++..++..++++. .++...+++.+
T Consensus 105 ~~~~g~l~~~~t~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~ 163 (567)
T COG1132 105 KAKSGDLISRLTNDVEAVSNLVSTVLVLVFTSILLLIGSLVLLFSLSWRLALILLLILP 163 (567)
T ss_pred cCCcchHHHHHHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 9999999999999999999998643 3344456666666555553 45555555444
No 34
>PLN03130 ABC transporter C family member; Provisional
Probab=99.20 E-value=3e-09 Score=92.01 Aligned_cols=105 Identities=12% Similarity=0.047 Sum_probs=81.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhccCcccccCCChhHHHHHHHhhHhHHHHHHH-HhHHHhH
Q psy1504 34 GALVLITFLNSLLNAHYNTMSSHIGLRMRAAVCSLVFRKCLKLDMVSTRETAPGQIVNLVSNDVSRFDLVTV-TSHFMWS 112 (153)
Q Consensus 34 ~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~lr~~if~k~l~l~~~~~~~~~~G~i~~~~t~D~~~i~~~~~-~~~~~~~ 112 (153)
..++++.++..++.+...+...+.+.+...++|..+++|+++.|+++|+++++|+++||+++|++.+.+... .+..++.
T Consensus 957 ~i~~~l~~~~~i~~~~~~~~~~~~~~~~~~~L~~~l~~~ll~~p~~ffd~~~~G~IlnR~s~Di~~id~~l~~~~~~~~~ 1036 (1622)
T PLN03130 957 LIYALLSFGQVLVTLLNSYWLIMSSLYAAKRLHDAMLGSILRAPMSFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFLG 1036 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHhccCCchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556666777777778888899999999999999999999999999999999999999999999999874 5677777
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHH
Q psy1504 113 SPIISLIVTYIIYKDIGNAAFFGLAA 138 (153)
Q Consensus 113 ~~i~ii~~~~~l~~~lg~~~l~~~~~ 138 (153)
..+..+++++++.....+..++.+++
T Consensus 1037 ~~~~~i~~~i~i~~~~~~~~~~~~pl 1062 (1622)
T PLN03130 1037 QIFQLLSTFVLIGIVSTISLWAIMPL 1062 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77776666655554333333333333
No 35
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=99.19 E-value=2.3e-09 Score=92.44 Aligned_cols=113 Identities=15% Similarity=0.097 Sum_probs=87.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhccCcccccCCChhHHHHHHHhhHhHHHHHHH-HhHHHhHH
Q psy1504 35 ALVLITFLNSLLNAHYNTMSSHIGLRMRAAVCSLVFRKCLKLDMVSTRETAPGQIVNLVSNDVSRFDLVTV-TSHFMWSS 113 (153)
Q Consensus 35 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~lr~~if~k~l~l~~~~~~~~~~G~i~~~~t~D~~~i~~~~~-~~~~~~~~ 113 (153)
.+.+..++..++.+...+.....+.+...++|..+++|+++.|+.+|+++++|+++||+++|++.+++.+. .+..++..
T Consensus 1010 iy~~l~i~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ll~~p~~ff~~~~~G~ilnR~s~Di~~id~~l~~~~~~~~~~ 1089 (1522)
T TIGR00957 1010 VYGALGILQGFAVFGYSMAVSIGGIQASRVLHQDLLHNKLRSPMSFFERTPSGNLVNRFSKELDTVDSMIPPVIKMFMGS 1089 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhHhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455566666667677778888999999999999999999999999999999999999999999999984 67788888
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q psy1504 114 PIISLIVTYIIYKDIGNAAFFGLAAAFCVIPLQL 147 (153)
Q Consensus 114 ~i~ii~~~~~l~~~lg~~~l~~~~~~~~~~~~~~ 147 (153)
++.+++++++++....+.+++.+++.++...++.
T Consensus 1090 ~~~~i~~li~~~~~~~~~~~~~~~~~~~~~~~~~ 1123 (1522)
T TIGR00957 1090 LFNVIGALIVILLATPIAAVIIPPLGLLYFFVQR 1123 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888877765444444433443333333333
No 36
>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=99.12 E-value=1.8e-08 Score=79.13 Aligned_cols=127 Identities=13% Similarity=0.128 Sum_probs=88.2
Q ss_pred hhchhHHHHHHHhhhcccCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhccCccccc
Q psy1504 3 LGITRPFVLGMFLSYFKVASTTATETAAVAGGALVLITFLNSLLNAHYNTMSSHIGLRMRAAVCSLVFRKCLKLDMVSTR 82 (153)
Q Consensus 3 ~~~~~p~~~~~ii~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~lr~~if~k~l~l~~~~~~ 82 (153)
+.+..|+.+++++|.+...+ +....+.+...++++.++..++.+...+...+.+.++..++|..+|+|++++|..
T Consensus 21 ~~l~~p~~~~~iid~~~~~~--~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~--- 95 (544)
T TIGR01842 21 LMLAPPLYMLQVYDRVLTSG--SVPTLLMLTVLALGLYLFLGLLDALRSFVLVRIGEKLDGALNQPIFAASFSATLR--- 95 (544)
T ss_pred HHHHHHHHHHHHHHHhccCC--chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccc---
Confidence 45678999999998764211 2222334455566667778888999999999999999999999999999999873
Q ss_pred CCChhHHHHHHHhhHhHHHHHHHH--hHHHhHHHHHHHHHHHHHH---HHHhHHHHHHHH
Q psy1504 83 ETAPGQIVNLVSNDVSRFDLVTVT--SHFMWSSPIISLIVTYIIY---KDIGNAAFFGLA 137 (153)
Q Consensus 83 ~~~~G~i~~~~t~D~~~i~~~~~~--~~~~~~~~i~ii~~~~~l~---~~lg~~~l~~~~ 137 (153)
+.|+..++.++|++++++.+.. ...++..++.++.. ++++ +.++...+++.+
T Consensus 96 --~~~~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~~l~li~l~~~~ 152 (544)
T TIGR01842 96 --RGKIDGLQALRDLDQLRQFLTGPGLFAFFDAPWMPIYL-LVCFLLHPWIGILALGGAV 152 (544)
T ss_pred --CccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH-HHHHHHhhHHHHHHHHHHH
Confidence 3366789999999999998743 44444555444333 3344 344444444444
No 37
>PLN03232 ABC transporter C family member; Provisional
Probab=99.10 E-value=8.6e-09 Score=88.85 Aligned_cols=105 Identities=11% Similarity=0.046 Sum_probs=81.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhccCcccccCCChhHHHHHHHhhHhHHHHHH-HHhHHHh
Q psy1504 33 GGALVLITFLNSLLNAHYNTMSSHIGLRMRAAVCSLVFRKCLKLDMVSTRETAPGQIVNLVSNDVSRFDLVT-VTSHFMW 111 (153)
Q Consensus 33 ~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~lr~~if~k~l~l~~~~~~~~~~G~i~~~~t~D~~~i~~~~-~~~~~~~ 111 (153)
...+.++.++..++.....+...+.+.+...++|..+++|+++.|+.+|+++++|+++||+++|++.+++.+ ..+..++
T Consensus 953 l~~y~~l~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~p~~ff~~~~~G~ilnr~s~Di~~id~~l~~~~~~~~ 1032 (1495)
T PLN03232 953 IVVYALLGFGQVAVTFTNSFWLISSSLHAAKRLHDAMLNSILRAPMLFFHTNPTGRVINRFSKDIGDIDRNVANLMNMFM 1032 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeeCcCCchHHHHHhHhhHHHHHHHHHHHHHHHH
Confidence 334555566667777777788889999999999999999999999999999999999999999999999988 4567777
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHH
Q psy1504 112 SSPIISLIVTYIIYKDIGNAAFFGLA 137 (153)
Q Consensus 112 ~~~i~ii~~~~~l~~~lg~~~l~~~~ 137 (153)
...+.++++++.+.....+..++.++
T Consensus 1033 ~~~~~~i~~~i~~~~~~~~~~~~~~~ 1058 (1495)
T PLN03232 1033 NQLWQLLSTFALIGTVSTISLWAIMP 1058 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777766666655443333333333
No 38
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=98.99 E-value=4.7e-08 Score=84.35 Aligned_cols=106 Identities=15% Similarity=0.099 Sum_probs=83.1
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhccCcccccCCChhHHHHHHHhhHhHHHHHH-HHhHHHhHHHHHHHHH
Q psy1504 42 LNSLLNAHYNTMSSHIGLRMRAAVCSLVFRKCLKLDMVSTRETAPGQIVNLVSNDVSRFDLVT-VTSHFMWSSPIISLIV 120 (153)
Q Consensus 42 ~~~~~~~~~~~~~~~~~~~~~~~lr~~if~k~l~l~~~~~~~~~~G~i~~~~t~D~~~i~~~~-~~~~~~~~~~i~ii~~ 120 (153)
...++.....+...+.+.+....++..+++++++.|..+|++.++|+++||+++|++.+.+.. ..+..++...+.+++.
T Consensus 937 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ll~~p~~ff~~~~~G~ilnRfs~Di~~id~~l~~~~~~~~~~~~~~i~~ 1016 (1490)
T TIGR01271 937 SVLALGFFRGLPLVHTLLTVSKRLHEQMLHSVLQAPMAVLNTMKAGRILNRFTKDMAIIDDMLPLTLFDFIQLTLIVLGA 1016 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHhCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555666778888999999999999999999999999999999999999999999998 4677777888888888
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHH
Q psy1504 121 TYIIYKDIGNAAFFGLAAAFCVIPLQL 147 (153)
Q Consensus 121 ~~~l~~~lg~~~l~~~~~~~~~~~~~~ 147 (153)
++++++..++..++.+++.+++..++.
T Consensus 1017 l~~i~~~~p~l~l~~~~l~~~~~~~~~ 1043 (1490)
T TIGR01271 1017 IFVVSVLQPYIFIAAIPVAVIFIMLRA 1043 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 877776666655555554444444443
No 39
>PTZ00243 ABC transporter; Provisional
Probab=98.99 E-value=4.4e-08 Score=84.79 Aligned_cols=85 Identities=13% Similarity=0.035 Sum_probs=66.9
Q ss_pred HHHHHHhHHHHHHHHHHHHHhhccCcccccCCChhHHHHHHHhhHhHHHHHH-HHhHHHhHHHHHHHHHHHHHHHHHhHH
Q psy1504 53 MSSHIGLRMRAAVCSLVFRKCLKLDMVSTRETAPGQIVNLVSNDVSRFDLVT-VTSHFMWSSPIISLIVTYIIYKDIGNA 131 (153)
Q Consensus 53 ~~~~~~~~~~~~lr~~if~k~l~l~~~~~~~~~~G~i~~~~t~D~~~i~~~~-~~~~~~~~~~i~ii~~~~~l~~~lg~~ 131 (153)
.......+....+|..+|+++++.|..+|+++++|+++||+++|++.+.+.+ ..+..++...+.+++++++++....+.
T Consensus 1021 ~~~~~~~~~~~~l~~~l~~~ll~~p~~ffd~~~~G~ilnR~s~Di~~id~~l~~~l~~~~~~~~~~i~~li~~~~~~p~~ 1100 (1560)
T PTZ00243 1021 LSYEAMRRGSRNMHRDLLRSVSRGTMSFFDTTPLGRILNRFSRDIDILDNTLPMSYLYLLQCLFSICSSILVTSASQPFV 1100 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCChhhccCCCccHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455666789999999999999999999999999999999999999998 467777778888887777776554433
Q ss_pred HHHHHH
Q psy1504 132 AFFGLA 137 (153)
Q Consensus 132 ~l~~~~ 137 (153)
.++.++
T Consensus 1101 ~~~~i~ 1106 (1560)
T PTZ00243 1101 LVALVP 1106 (1560)
T ss_pred HHHHHH
Confidence 333333
No 40
>KOG0055|consensus
Probab=98.98 E-value=1.5e-07 Score=78.20 Aligned_cols=120 Identities=11% Similarity=0.033 Sum_probs=95.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhccCcccccC--CChhHHHHHHHhhHhHHHHHHH-Hh
Q psy1504 31 VAGGALVLITFLNSLLNAHYNTMSSHIGLRMRAAVCSLVFRKCLKLDMVSTRE--TAPGQIVNLVSNDVSRFDLVTV-TS 107 (153)
Q Consensus 31 ~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~lr~~if~k~l~l~~~~~~~--~~~G~i~~~~t~D~~~i~~~~~-~~ 107 (153)
.|+..+++..+...++++...+.....+.+++.++|...|+|+++.+..+||+ ++ |.+.+|+.+|...++.... .+
T Consensus 708 ~~al~f~~l~~~~~i~~~~q~~~f~~~ge~Lt~R~R~~~F~~ll~qd~~wFD~~~ns-g~l~~RLa~Da~~vr~~v~~rl 786 (1228)
T KOG0055|consen 708 AWALIFLGLGIVSGITNFLQHYFFGIAGEKLTKRLRSMMFRALLRQEVGWFDDPENS-GALSSRLATDASNVRAAVGDRL 786 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccCCCccc-hHHHHHHhcchHHHHHHHHHHH
Confidence 47777888888899999999999999999999999999999999999999975 45 9999999999999999984 46
Q ss_pred HHHhHHHHHHHHHHH---HHHHHHhHHHHHHHHHHHHHHHHHHhhhc
Q psy1504 108 HFMWSSPIISLIVTY---IIYKDIGNAAFFGLAAAFCVIPLQLCSTY 151 (153)
Q Consensus 108 ~~~~~~~i~ii~~~~---~l~~~lg~~~l~~~~~~~~~~~~~~~i~k 151 (153)
..++.....++.+++ ..-|+++..+++..|++.+..-.+..+.+
T Consensus 787 ~~vv~~~~~~~~~iiiaf~~~W~lalv~la~~Pll~~~~~~~~~~~~ 833 (1228)
T KOG0055|consen 787 SLVVQNIAAVIIGIIIAFIYGWRLALVVLATFPLLILSGYLQKKFLK 833 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 666655554444443 33367777777777776666666555443
No 41
>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=98.98 E-value=8e-08 Score=73.61 Aligned_cols=106 Identities=17% Similarity=0.146 Sum_probs=81.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhccCcccccCCChhHHHHHHHhhHhHHHHHH-HHhHHH
Q psy1504 32 AGGALVLITFLNSLLNAHYNTMSSHIGLRMRAAVCSLVFRKCLKLDMVSTRETAPGQIVNLVSNDVSRFDLVT-VTSHFM 110 (153)
Q Consensus 32 ~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~lr~~if~k~l~l~~~~~~~~~~G~i~~~~t~D~~~i~~~~-~~~~~~ 110 (153)
.++..=++.+.+++.+|.-....+....++..++|..+|+|+...++.-..+.+.||+.||++.|++.+++.+ ..+.-.
T Consensus 60 p~a~VR~~aI~Rt~~RY~ERlvsH~AtfrvL~~lRv~~f~kl~p~sp~~~~r~r~gdLL~RLvaDVd~Ld~lyLRvi~P~ 139 (573)
T COG4987 60 PSAGVRGLAILRTAARYVERLVSHDATFRVLSALRVRLFEKLEPLSPALLLRYRSGDLLNRLVADVDALDNLYLRVIAPA 139 (573)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhccCChHHHHhcChHhHHHHHHhhHHHHhhHHHHHHhhH
Confidence 3445556778899999999999999999999999999999999999999999999999999999999999998 444333
Q ss_pred hHHHHHHHHHHHHH-HHHHhHHHHHHHH
Q psy1504 111 WSSPIISLIVTYII-YKDIGNAAFFGLA 137 (153)
Q Consensus 111 ~~~~i~ii~~~~~l-~~~lg~~~l~~~~ 137 (153)
+.+...+.++.+.+ +.-.+...+++..
T Consensus 140 ~~a~~~~~~~~i~L~f~~~~~Alll~~~ 167 (573)
T COG4987 140 VVALVLIAVVTIGLSFFSIPLALLLGLI 167 (573)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 34444444444333 3333334444433
No 42
>KOG0054|consensus
Probab=98.89 E-value=1.1e-07 Score=80.24 Aligned_cols=116 Identities=18% Similarity=0.134 Sum_probs=97.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhccCcccccCCChhHHHHHHHhhHhHHHHHHH-HhHHHhHH
Q psy1504 35 ALVLITFLNSLLNAHYNTMSSHIGLRMRAAVCSLVFRKCLKLDMVSTRETAPGQIVNLVSNDVSRFDLVTV-TSHFMWSS 113 (153)
Q Consensus 35 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~lr~~if~k~l~l~~~~~~~~~~G~i~~~~t~D~~~i~~~~~-~~~~~~~~ 113 (153)
.+.+..+.+.++...........+.+....+-+.++++.++-|+++||.+++|.|+||++.|++.+.+... .+..+...
T Consensus 863 vY~~l~~~~~~~~~~rs~~~~~~~l~aS~~Lh~~ml~~Ilrapm~FFdtTP~GRILNRFSkD~~~vD~~Lp~~~~~~~~~ 942 (1381)
T KOG0054|consen 863 VYALLGVASSLLTLLRSFLFAKGGLKASRKLHDKLLNSILRAPMSFFDTTPTGRILNRFSKDIDTVDVLLPFTLEFFLQS 942 (1381)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhcCCCCccchhhhcccchHHHHHhhHHHHHHHHHH
Confidence 34445555566666677777788899999999999999999999999999999999999999999999984 57777888
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhh
Q psy1504 114 PIISLIVTYIIYKDIGNAAFFGLAAAFCVIPLQLCST 150 (153)
Q Consensus 114 ~i~ii~~~~~l~~~lg~~~l~~~~~~~~~~~~~~~i~ 150 (153)
.+++++.++++.....|..++.+++.+++..++.+..
T Consensus 943 ~~~~l~~~~vi~~~~P~fli~~~pl~v~~~~~~~~Y~ 979 (1381)
T KOG0054|consen 943 LLNVLGILVVISYVTPWFLIAIIPLGVIYYFVQRYYL 979 (1381)
T ss_pred HHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888888888877888888888888877776543
No 43
>KOG0057|consensus
Probab=98.52 E-value=1.1e-05 Score=62.38 Aligned_cols=130 Identities=17% Similarity=0.225 Sum_probs=106.0
Q ss_pred hhchhHHHHHHHhhhccc-Ccccc-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhccCccc
Q psy1504 3 LGITRPFVLGMFLSYFKV-ASTTA-TETAAVAGGALVLITFLNSLLNAHYNTMSSHIGLRMRAAVCSLVFRKCLKLDMVS 80 (153)
Q Consensus 3 ~~~~~p~~~~~ii~~~~~-~~~~~-~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~lr~~if~k~l~l~~~~ 80 (153)
+....|.+.+..+|.... ++++. ....-..+..+++..+..++++........+..+++.++....+|+|.+.++.++
T Consensus 45 l~v~vp~~~~~~id~l~~~~~~~a~~~~~~~~~~~y~iar~~s~~F~el~~~vfa~v~q~~iR~~~~~vf~~~~~ld~~~ 124 (591)
T KOG0057|consen 45 LNVQVPFIFKLIIDGLNDADGNPAVLSTITALLAGYGIARLGSSVFNELRNFVFAKVAQRVIRDSSSDVFRHLMSLDLSF 124 (591)
T ss_pred hheehHHHHHHHHhhhhhcccCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHh
Confidence 456678888888887642 22221 1112234446677788889999999999999999999999999999999999999
Q ss_pred ccCCChhHHHHHHHhhHhHHHHHHH-HhHHHhHHHHHHHHHHHHHHHHHhHHH
Q psy1504 81 TRETAPGQIVNLVSNDVSRFDLVTV-TSHFMWSSPIISLIVTYIIYKDIGNAA 132 (153)
Q Consensus 81 ~~~~~~G~i~~~~t~D~~~i~~~~~-~~~~~~~~~i~ii~~~~~l~~~lg~~~ 132 (153)
+.+..+|++.+.+..-...+..... ...+++...+.+..++..++++.|...
T Consensus 125 ~~~~~tG~l~~~idRgsraI~~vl~~~V~~i~p~~~~i~~v~~~l~~~~Ga~~ 177 (591)
T KOG0057|consen 125 FLSRGTGALNRIIDRGSRAISFVLSAMVFNIIPTLFEIALVSGILYYKFGAAF 177 (591)
T ss_pred hcCCCcchHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHH
Confidence 9999999999999999999999996 468888888999999999999988744
No 44
>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]
Probab=98.39 E-value=8.8e-06 Score=60.92 Aligned_cols=104 Identities=9% Similarity=-0.013 Sum_probs=86.9
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHhhccCcccccCCChhHHHHHHHhhHhHHHHHHHHhHHHhHHHHHHHHHHHHHH
Q psy1504 46 LNAHYNTMSSHIGLRMRAAVCSLVFRKCLKLDMVSTRETAPGQIVNLVSNDVSRFDLVTVTSHFMWSSPIISLIVTYIIY 125 (153)
Q Consensus 46 ~~~~~~~~~~~~~~~~~~~lr~~if~k~l~l~~~~~~~~~~G~i~~~~t~D~~~i~~~~~~~~~~~~~~i~ii~~~~~l~ 125 (153)
.+-..+.-.+..+.+....+|.++-+|++.-|...+++.+++.++...++|+..+.-.+..++++..+.+..+++..++.
T Consensus 64 ss~is~lg~t~~gq~~I~klr~~~~~kil~tplerier~~~~rlla~L~~Dvr~ISf~~s~lp~~~qa~il~l~s~aYLa 143 (546)
T COG4615 64 SSLISQLGLTTLGQHFIYKLRSEFIKKILDTPLERIERLGSARLLAGLTSDVRNISFAFSRLPELVQAIILTLGSAAYLA 143 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHhcccchhhhhcccccceeehHhhhHHHHHHHHHHHHHHHHHH
Confidence 33445666778888999999999999999999999999999999999999999999555678999888888899999999
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHhh
Q psy1504 126 KDIGNAAFFGLAAAFCVIPLQLCS 149 (153)
Q Consensus 126 ~~lg~~~l~~~~~~~~~~~~~~~i 149 (153)
+.-+...++++..+.+.+-.+...
T Consensus 144 yLSp~mf~l~vV~ivv~~~~~~~~ 167 (546)
T COG4615 144 YLSPKMFLLTVVWIVVTIWGGFVL 167 (546)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHH
Confidence 888888888877666665555443
No 45
>KOG0055|consensus
Probab=98.38 E-value=1.6e-05 Score=66.64 Aligned_cols=107 Identities=12% Similarity=-0.023 Sum_probs=79.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhccCcccccCCChhHHHHHHHhhHhHHHHHH-HHhHHH
Q psy1504 32 AGGALVLITFLNSLLNAHYNTMSSHIGLRMRAAVCSLVFRKCLKLDMVSTRETAPGQIVNLVSNDVSRFDLVT-VTSHFM 110 (153)
Q Consensus 32 ~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~lr~~if~k~l~l~~~~~~~~~~G~i~~~~t~D~~~i~~~~-~~~~~~ 110 (153)
++..++.+.+...+..+....-+.+.+.|....+|..-.+..+|-..++||++.+|++.+++++|++.+++.+ .-...+
T Consensus 73 ~~l~~~~lg~~~~~~~~~q~~c~~~~geRq~~riR~~yl~~iLrQdi~~fD~~~~g~~~~~l~~d~~~I~d~~geKvg~~ 152 (1228)
T KOG0055|consen 73 VALYFVYLGVGVFISGFIQVSCWMRTGERQTARIRSKYLKAILRQDIGWFDTNSTGELVTRLSDDIELIQDAIGEKVGNF 152 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccceeecccccceEEEecCcHHHHHHHHHHHHHHH
Confidence 3444444555555566666677788999999999999999999999999999999999999999999999999 456666
Q ss_pred hHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q psy1504 111 WSSPIISLIVTYIIYKDIGNAAFFGLAA 138 (153)
Q Consensus 111 ~~~~i~ii~~~~~l~~~lg~~~l~~~~~ 138 (153)
+....+++..++.-|..-++.+++.+.+
T Consensus 153 i~~~~~fi~g~ii~F~~~W~Ltlv~l~~ 180 (1228)
T KOG0055|consen 153 IQLLATFIAGFVIGFYYGWKLTLVMLSF 180 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6665555555555544433345444443
No 46
>PF13748 ABC_membrane_3: ABC transporter transmembrane region
Probab=98.03 E-value=0.0018 Score=45.38 Aligned_cols=134 Identities=10% Similarity=-0.024 Sum_probs=83.9
Q ss_pred hhchhHHHHHHHhhhcccCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhccCccccc
Q psy1504 3 LGITRPFVLGMFLSYFKVASTTATETAAVAGGALVLITFLNSLLNAHYNTMSSHIGLRMRAAVCSLVFRKCLKLDMVSTR 82 (153)
Q Consensus 3 ~~~~~p~~~~~ii~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~lr~~if~k~l~l~~~~~~ 82 (153)
+.+..|.+.+..+|.+.+++ ......++. ..++..........+-++...++..++-..++.+-. .+
T Consensus 25 l~l~yPl~~G~AIn~ll~g~---~~~~~~~~~----~~l~~~~igaaRR~~DTRvf~rIy~~la~~vi~~qr------~~ 91 (237)
T PF13748_consen 25 LLLLYPLFIGFAINALLNGD---VWQALMYAA----LVLLMWAIGAARRIYDTRVFSRIYAELAVPVILSQR------QQ 91 (237)
T ss_pred HHHHHHHHHHHHHHHHHccc---HHHHHHHHH----HHHHHHHHhhhhHHHhhHHHHHHHHHHhHHHHHHHH------Hh
Confidence 45689999999999886422 222223322 222223333334444455555555555555444332 34
Q ss_pred CCChhHHHHHHHhhHhHHHHHHH-HhHHHhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhh
Q psy1504 83 ETAPGQIVNLVSNDVSRFDLVTV-TSHFMWSSPIISLIVTYIIYKDIGNAAFFGLAAAFCVIPLQLCST 150 (153)
Q Consensus 83 ~~~~G~i~~~~t~D~~~i~~~~~-~~~~~~~~~i~ii~~~~~l~~~lg~~~l~~~~~~~~~~~~~~~i~ 150 (153)
+.+++++..|.+ =..++-|+++ .+|.++.+.+.++++.+++...--|..+.++..+..+..+...++
T Consensus 92 ~~~~S~i~ARv~-lsRE~VdFfE~~lP~lits~vsivga~vmLl~~e~~~g~~~l~~l~~~~~i~~~f~ 159 (237)
T PF13748_consen 92 GLSVSTIAARVA-LSREFVDFFEQHLPTLITSVVSIVGAAVMLLVFEFWLGLACLLILALFLLILPRFA 159 (237)
T ss_pred CCChhHHHHHHH-HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567788888883 3678888884 799999999999999999987666666666655555444444443
No 47
>PF06472 ABC_membrane_2: ABC transporter transmembrane region 2; InterPro: IPR010509 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This region covers the N terminus and first two membrane regions of a small family of ABC transporters. Mutations in this domain in P28288 from SWISSPROT are believed responsible for Zellweger Syndrome-2 []; mutations in P33897 from SWISSPROT are responsible for recessive X-linked adrenoleukodystrophy []. A Saccharomyces cerevisiae protein containing this domain is involved in the import of long-chain fatty acids [].; GO: 0006810 transport, 0016020 membrane
Probab=97.89 E-value=0.0039 Score=45.26 Aligned_cols=102 Identities=12% Similarity=0.100 Sum_probs=77.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhccCcccccCC---ChhHHHHHHHhhHhHHHHHHH-Hh
Q psy1504 32 AGGALVLITFLNSLLNAHYNTMSSHIGLRMRAAVCSLVFRKCLKLDMVSTRET---APGQIVNLVSNDVSRFDLVTV-TS 107 (153)
Q Consensus 32 ~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~lr~~if~k~l~l~~~~~~~~---~~G~i~~~~t~D~~~i~~~~~-~~ 107 (153)
......+..+..+.......|....+..+.+..|.+.+.++-++-...|.-+. +..+.=.|++.|++++.+... ..
T Consensus 68 ~l~~~~~l~~~~~~l~~~~~yl~~~L~l~wR~~Lt~~~~~~yl~~~~yY~l~~~~~~idNpDQRIteDi~~f~~~~~~l~ 147 (281)
T PF06472_consen 68 LLLLFLLLAIASALLNSILKYLRQRLALRWREWLTRHLHDRYLSNRTYYRLNNLDGRIDNPDQRITEDIRKFTESSLSLF 147 (281)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhHhhhccccccccHhhHHHHHHHHHHHHHHHHH
Confidence 33345566667777788888899999999999999999999887774443222 244666799999999999885 45
Q ss_pred HHHhHHHHHHHHHHHHHHHHHhHHHH
Q psy1504 108 HFMWSSPIISLIVTYIIYKDIGNAAF 133 (153)
Q Consensus 108 ~~~~~~~i~ii~~~~~l~~~lg~~~l 133 (153)
..++..++.++.....++...|+...
T Consensus 148 ~~~~~~~~~l~~f~~~L~~~~g~~~~ 173 (281)
T PF06472_consen 148 LGLLKPILDLISFSVILWSISGWLGP 173 (281)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCchHH
Confidence 77778888888888888887776544
No 48
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=97.67 E-value=0.0049 Score=47.89 Aligned_cols=141 Identities=13% Similarity=0.091 Sum_probs=99.5
Q ss_pred chhHHHHHHHhhhcccCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhccCcccccCC
Q psy1504 5 ITRPFVLGMFLSYFKVASTTATETAAVAGGALVLITFLNSLLNAHYNTMSSHIGLRMRAAVCSLVFRKCLKLDMVSTRET 84 (153)
Q Consensus 5 ~~~p~~~~~ii~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~lr~~if~k~l~l~~~~~~~~ 84 (153)
+..|...-++-|.+-... +....+.+.+..++.+.++..++..-.....+++.++-..+...+|+-..+.+.......
T Consensus 40 L~~~lyMLQVyDRVL~S~--s~~TLv~Ltvlal~ly~~~glLd~iR~~~l~Rig~~lD~~L~~~v~~a~~~~~l~~~~~g 117 (580)
T COG4618 40 LTGPLYMLQVYDRVLPSR--SVPTLVMLTVLALGLYAFQGLLDAIRSRVLVRIGERLDRQLNGPVFAASFSAPLLRRGSG 117 (580)
T ss_pred HhhhHHHHHHHhhhccCC--CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHhhHHhhcCCC
Confidence 445555556666664322 223455666677778888999999999999999999999999999999876665543333
Q ss_pred ChhHHHHHHHhhHhHHHHHHHH--hHHH---hHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhcc
Q psy1504 85 APGQIVNLVSNDVSRFDLVTVT--SHFM---WSSPIISLIVTYIIYKDIGNAAFFGLAAAFCVIPLQLCSTYT 152 (153)
Q Consensus 85 ~~G~i~~~~t~D~~~i~~~~~~--~~~~---~~~~i~ii~~~~~l~~~lg~~~l~~~~~~~~~~~~~~~i~k~ 152 (153)
+..+. -+|.+++.+|.+. ...+ ...|+.+.+ ++.+-..+|+.+++|..+++.+..+|-..+++
T Consensus 118 ~~~Q~----LrDL~qvR~Fltg~g~~A~fDaPW~P~yl~v-~fl~Hp~lG~~a~~ga~iLv~la~ln~~~t~~ 185 (580)
T COG4618 118 DGLQP----LRDLDQVRQFLTGTGLTAFFDAPWMPLYLAV-IFLFHPWLGLIALAGAIILVVLALLNERATRK 185 (580)
T ss_pred ccccc----hhhHHHHHHHHcCCCcchhcCCchHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 33333 3699999999853 3333 344544333 33444688999999999999999999888876
No 49
>KOG0056|consensus
Probab=96.60 E-value=0.0054 Score=47.77 Aligned_cols=93 Identities=11% Similarity=0.125 Sum_probs=67.2
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhccCcccccCCChhHHHHHHHhhHhHHHHHHHH-hHHHhHHHHHHHHHH
Q psy1504 43 NSLLNAHYNTMSSHIGLRMRAAVCSLVFRKCLKLDMVSTRETAPGQIVNLVSNDVSRFDLVTVT-SHFMWSSPIISLIVT 121 (153)
Q Consensus 43 ~~~~~~~~~~~~~~~~~~~~~~lr~~if~k~l~l~~~~~~~~~~G~i~~~~t~D~~~i~~~~~~-~~~~~~~~i~ii~~~ 121 (153)
+.+++...++.+.+..+...+++-..+|+|+..++....-+.++||++..+....+.+. +..+ ..++....+-+++++
T Consensus 272 sG~~~nlRtfLWi~VqQyttR~ie~~lfrHlh~LSlrwHL~rrtGeVLrvmdrGtssvt-ll~yvVF~i~PtllDl~va~ 350 (790)
T KOG0056|consen 272 SGFLNNLRTFLWIPVQQYTTREIETELFRHLHNLSLRWHLNRRTGEVLRVMDRGTSSVT-LLEYVVFQIGPTLLDLGVAM 350 (790)
T ss_pred ccchhhhheeEEEEhhHhHHHHHHHHHHHHHHhhceeeeecccccceeehhccCcchhh-HHHHHHhhcccHHHHhhhhh
Confidence 35666677777888999999999999999999999999999999999999988877766 4433 345444455555555
Q ss_pred HHHHHHHhHHHHHHHHH
Q psy1504 122 YIIYKDIGNAAFFGLAA 138 (153)
Q Consensus 122 ~~l~~~lg~~~l~~~~~ 138 (153)
++.+.. ...++|+.+
T Consensus 351 vYF~~~--Fn~wFgLIV 365 (790)
T KOG0056|consen 351 VYFFIK--FNIWFGLIV 365 (790)
T ss_pred hhhhhh--HhHHHHHHH
Confidence 544443 334444443
No 50
>PRK12369 putative transporter; Reviewed
Probab=96.26 E-value=0.32 Score=36.27 Aligned_cols=88 Identities=13% Similarity=0.124 Sum_probs=64.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhccCcccccCCChhHHHHHHHhhHhHHHHHHH-HhHHHhHH
Q psy1504 35 ALVLITFLNSLLNAHYNTMSSHIGLRMRAAVCSLVFRKCLKLDMVSTRETAPGQIVNLVSNDVSRFDLVTV-TSHFMWSS 113 (153)
Q Consensus 35 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~lr~~if~k~l~l~~~~~~~~~~G~i~~~~t~D~~~i~~~~~-~~~~~~~~ 113 (153)
.+.+.............|...+...+.|..|.+...++-+.... +.+..| .|++.|++.+.+... ....++.+
T Consensus 68 ~f~~~~~~~v~~~v~~~~~~~~l~i~WR~wLT~~~l~~wl~~~~----~iDNPD--QRI~EDi~~f~~~tl~l~~~~i~s 141 (326)
T PRK12369 68 SFLAIAMPYVLIATVVDYFASHYAFRWREAMTFSYLKFWRNKRD----NIEGSS--QRIQEDTYRFAKIMESLGLSFLRA 141 (326)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC----CCCCcc--HhHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455555666677888888999999999999999887431 122233 799999999999885 45777788
Q ss_pred HHHHHHHHHHHHHHH
Q psy1504 114 PIISLIVTYIIYKDI 128 (153)
Q Consensus 114 ~i~ii~~~~~l~~~l 128 (153)
+++++....+++..-
T Consensus 142 ~~~l~sF~~iLW~lS 156 (326)
T PRK12369 142 IMTLIAFIPILWGLS 156 (326)
T ss_pred HHHHHHHHHHHHHhC
Confidence 888877777777633
No 51
>COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]
Probab=95.47 E-value=0.14 Score=39.27 Aligned_cols=93 Identities=11% Similarity=0.111 Sum_probs=73.1
Q ss_pred HHHHHHhHHHHHHHHHHHHHhhccCcccccCCChhHHHHHHHhhHhHHHHHHH-HhHHHhHHHHHHHHHHHHHHHHHhHH
Q psy1504 53 MSSHIGLRMRAAVCSLVFRKCLKLDMVSTRETAPGQIVNLVSNDVSRFDLVTV-TSHFMWSSPIISLIVTYIIYKDIGNA 131 (153)
Q Consensus 53 ~~~~~~~~~~~~lr~~if~k~l~l~~~~~~~~~~G~i~~~~t~D~~~i~~~~~-~~~~~~~~~i~ii~~~~~l~~~lg~~ 131 (153)
.....++.....+-...|.|+.+|+..+.-+.++|.+--.+.....-++...+ .+.+.....+.+..+.+++++.-||+
T Consensus 5 ~fs~v~q~a~r~la~~~F~h~~~Lsl~fHl~r~TGglsR~ierGtkgI~~i~~~~l~~i~P~~~Ei~l~~vi~~~~~~~~ 84 (497)
T COG5265 5 LFSPVGQIAVRVLAYVTFFHLHSLSLRFHLERRTGGLSRAIERGTKGIETILRWILFNILPTLVEISLVAVILWRVYGWW 84 (497)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHhcchhhhhhcccCceeeHhhcCcccHHHHHHHHHHHhhHHHHHHHHHHHHHHhhcccH
Confidence 34566777788888999999999999999999999998888888888998885 46777788889999998998888875
Q ss_pred HHHH-HHHHHHHHHH
Q psy1504 132 AFFG-LAAAFCVIPL 145 (153)
Q Consensus 132 ~l~~-~~~~~~~~~~ 145 (153)
.... +..+.++.-+
T Consensus 85 f~~~t~vtv~lY~~f 99 (497)
T COG5265 85 FALTTLVTVILYLLF 99 (497)
T ss_pred HHHHHHHHHHHHHHh
Confidence 4444 4444444433
No 52
>PRK11098 microcin B17 transporter; Reviewed
Probab=94.81 E-value=1.4 Score=33.95 Aligned_cols=88 Identities=15% Similarity=0.143 Sum_probs=63.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhccCcccccCCChhHHHHHHHhhHhHHHHHHHH-hHHHhHH
Q psy1504 35 ALVLITFLNSLLNAHYNTMSSHIGLRMRAAVCSLVFRKCLKLDMVSTRETAPGQIVNLVSNDVSRFDLVTVT-SHFMWSS 113 (153)
Q Consensus 35 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~lr~~if~k~l~l~~~~~~~~~~G~i~~~~t~D~~~i~~~~~~-~~~~~~~ 113 (153)
......++.........+...+...+.|..|.+...+|=++.. ..+ +-=.|+++|++++.+.... ...++.+
T Consensus 143 ~f~~i~~~~v~l~v~~~~~~~~l~irWR~wLT~~yl~~Wl~~r--~ie-----nPDQRIqEDi~~F~~~tl~L~~~li~s 215 (409)
T PRK11098 143 VFLGIALIAVVISVLNNFFVSHYVFRWRTAMNEYYMAHWQKLR--HIE-----GAAQRVQEDTMRFASTLENLGVSFINA 215 (409)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--CCC-----CccHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555666667778888889999999999988877664 111 2457999999999998854 5777788
Q ss_pred HHHHHHHHHHHHHHHh
Q psy1504 114 PIISLIVTYIIYKDIG 129 (153)
Q Consensus 114 ~i~ii~~~~~l~~~lg 129 (153)
+++++....+++..-|
T Consensus 216 i~tLisF~~ILW~LS~ 231 (409)
T PRK11098 216 IMTLIAFLPVLVTLSA 231 (409)
T ss_pred HHHHHHHHHHHHHhcc
Confidence 8888777777776443
No 53
>KOG0060|consensus
Probab=94.09 E-value=1.1 Score=35.88 Aligned_cols=102 Identities=18% Similarity=0.140 Sum_probs=72.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhccCcccccCCC---hhHHHHHHHhhHhHHHHHHHH-hHHHh
Q psy1504 36 LVLITFLNSLLNAHYNTMSSHIGLRMRAAVCSLVFRKCLKLDMVSTRETA---PGQIVNLVSNDVSRFDLVTVT-SHFMW 111 (153)
Q Consensus 36 l~~~~l~~~~~~~~~~~~~~~~~~~~~~~lr~~if~k~l~l~~~~~~~~~---~G~i~~~~t~D~~~i~~~~~~-~~~~~ 111 (153)
.+.+....+..+....+...-...+.+..+..-++++.++--..|.-.+. .-+==.|++.|++++...... ..++.
T Consensus 128 ~~~~~~~~s~~~a~~ky~~~~L~Lr~R~~ltk~lh~~Y~k~~~yYkis~~d~ridNPDQrltqDv~kf~~~l~sl~s~l~ 207 (659)
T KOG0060|consen 128 YVLLIPGISLLNALLKFTTNELYLRFRKNLTKYLHRLYFKGFTYYKLSNLDDRIDNPDQRLTQDVEKFCRQLSSLYSNLL 207 (659)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHHHhccceEEEecccccccCChHHHHhHHHHHHHHHHHHHHHhhh
Confidence 34445556666777788888889999999999999988875444422211 122236899999999998854 57788
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHH
Q psy1504 112 SSPIISLIVTYIIYKDIGNAAFFGLA 137 (153)
Q Consensus 112 ~~~i~ii~~~~~l~~~lg~~~l~~~~ 137 (153)
.+|+.++...+-++...||.-.+.+.
T Consensus 208 ~a~~di~~Y~~~l~~s~g~~gp~~i~ 233 (659)
T KOG0060|consen 208 KAPFDLVYYTFRLFESAGWLGPVSIF 233 (659)
T ss_pred ccceeeehhhhHHhhhcCcccHHHHH
Confidence 88998888888888877775444433
No 54
>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei.
Probab=93.19 E-value=4.1 Score=33.46 Aligned_cols=116 Identities=13% Similarity=0.078 Sum_probs=65.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhccCcccccCCC-hhHHHHHHHhhHhHHHHHHHHhHHHhHH
Q psy1504 35 ALVLITFLNSLLNAHYNTMSSHIGLRMRAAVCSLVFRKCLKLDMVSTRETA-PGQIVNLVSNDVSRFDLVTVTSHFMWSS 113 (153)
Q Consensus 35 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~lr~~if~k~l~l~~~~~~~~~-~G~i~~~~t~D~~~i~~~~~~~~~~~~~ 113 (153)
..++..+..++......+...+...+++.++...+.++..+. ..+++-.. .++.=+.++.=++.++.+.......+..
T Consensus 140 ~~~l~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~l~~~~~~~-~~~~~~~~~d~~~g~~~srlt~Dv~~i~~~~~~~~~~ 218 (659)
T TIGR00954 140 KWFLIAPPASFINSAIKYLLKELKLRFRVRLTRYLYSKYLSG-FTFYKVSNLDSRIQNPDQLLTQDVEKFCDSVVELYSN 218 (659)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CceEEeccCCCCCCCccccHHHHHHHHHHHHHHHHHH
Confidence 344455566677777777777777777777777777777764 23222211 2224334444445555554445555555
Q ss_pred HHHHHHHHHHHHHHHhH-HHHHHHHHHHHHHHHHHhhhc
Q psy1504 114 PIISLIVTYIIYKDIGN-AAFFGLAAAFCVIPLQLCSTY 151 (153)
Q Consensus 114 ~i~ii~~~~~l~~~lg~-~~l~~~~~~~~~~~~~~~i~k 151 (153)
.+.-++.++.....+.. .-.....++++..|+...+.+
T Consensus 219 l~~~~~~ii~~~~~L~~~~~~~l~l~~l~~~~l~~~i~~ 257 (659)
T TIGR00954 219 LTKPILDVILYSFKLLTALGSVGPAGLFAYLFATGVVLT 257 (659)
T ss_pred HHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHH
Confidence 55555544433333332 445555667777888877765
No 55
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=90.26 E-value=8.8 Score=31.25 Aligned_cols=86 Identities=19% Similarity=0.152 Sum_probs=60.6
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhccCcccccCCCh------hHHHHHHHhhHhHHHHHHHH-hHHHhHHHH
Q psy1504 43 NSLLNAHYNTMSSHIGLRMRAAVCSLVFRKCLKLDMVSTRETAP------GQIVNLVSNDVSRFDLVTVT-SHFMWSSPI 115 (153)
Q Consensus 43 ~~~~~~~~~~~~~~~~~~~~~~lr~~if~k~l~l~~~~~~~~~~------G~i~~~~t~D~~~i~~~~~~-~~~~~~~~i 115 (153)
.........|.......+.+.-+.+.+.++-++-...|+ -... -+.=.|+..|+..+.+.... ...++.+.+
T Consensus 99 ~v~~~v~~~~L~~~l~~~wR~wLt~~l~~~wl~~~~~y~-l~~~~~~~~~dNpDQRi~eDi~~~t~~t~~l~~g~l~s~i 177 (604)
T COG4178 99 LVLLNVAQTWLNQMLRLRWREWLTKDLLDRWLDPRRYYR-LAQAGGIGLIDNPDQRIQEDIRNFTETTLDLSFGLLQSVI 177 (604)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHH-HHhcccccCCCChHHhHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 333344467777788889999999999999888774443 2222 34457999999999887754 466677777
Q ss_pred HHHHHHHHHHHHHh
Q psy1504 116 ISLIVTYIIYKDIG 129 (153)
Q Consensus 116 ~ii~~~~~l~~~lg 129 (153)
..+....+++...|
T Consensus 178 slisF~~iLw~lsg 191 (604)
T COG4178 178 SLISFTGILWSLSG 191 (604)
T ss_pred HHHHHHHHHHHccC
Confidence 77777777775444
No 56
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=82.90 E-value=23 Score=28.57 Aligned_cols=12 Identities=17% Similarity=0.409 Sum_probs=4.9
Q ss_pred ChhHHHHHHHhh
Q psy1504 85 APGQIVNLVSND 96 (153)
Q Consensus 85 ~~G~i~~~~t~D 96 (153)
+.+..-+.=+.|
T Consensus 107 ~~~~~~~~~~g~ 118 (574)
T PRK11160 107 SPAGLARYRQGD 118 (574)
T ss_pred ChHhhccCChhH
Confidence 344444333444
No 57
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=82.75 E-value=24 Score=28.51 Aligned_cols=34 Identities=18% Similarity=0.083 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q psy1504 39 ITFLNSLLNAHYNTMSSHIGLRMRAAVCSLVFRK 72 (153)
Q Consensus 39 ~~l~~~~~~~~~~~~~~~~~~~~~~~lr~~if~k 72 (153)
..++....++.......+...+++.++-+.+.+.
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~ll~~ 109 (588)
T PRK11174 76 RALLAWLRERVGFKAGQHIRQQIRQQVLDKLQQL 109 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3344444444445555555555555555555544
No 58
>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=81.23 E-value=26 Score=28.02 Aligned_cols=23 Identities=9% Similarity=0.132 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHH
Q psy1504 47 NAHYNTMSSHIGLRMRAAVCSLV 69 (153)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~lr~~i 69 (153)
.....+.......+........+
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~l 81 (544)
T TIGR01842 59 LGLLDALRSFVLVRIGEKLDGAL 81 (544)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333344444433333333
No 59
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=80.16 E-value=28 Score=27.68 Aligned_cols=30 Identities=7% Similarity=0.035 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHhh
Q psy1504 45 LLNAHYNTMSSHIGLRMRAAVCSLVFRKCL 74 (153)
Q Consensus 45 ~~~~~~~~~~~~~~~~~~~~lr~~if~k~l 74 (153)
+......+.......+....+...+=+++.
T Consensus 64 ~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~ 93 (529)
T TIGR02868 64 IGRAVFRYLERLVGHDAALRSLGRLRVRVY 93 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444555555555555555555544444
No 60
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=79.98 E-value=28 Score=27.64 Aligned_cols=33 Identities=30% Similarity=0.249 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhh
Q psy1504 42 LNSLLNAHYNTMSSHIGLRMRAAVCSLVFRKCL 74 (153)
Q Consensus 42 ~~~~~~~~~~~~~~~~~~~~~~~lr~~if~k~l 74 (153)
+..+......+.......+....+...+-.++.
T Consensus 52 ~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~ 84 (529)
T TIGR02857 52 LAVLLRALLGWLGERAAARAAAAVKSQLRERLL 84 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444445555555444444444433
No 61
>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter. This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.
Probab=77.89 E-value=35 Score=27.47 Aligned_cols=127 Identities=8% Similarity=-0.020 Sum_probs=69.0
Q ss_pred hchhHHHHHHHhhhcccCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhc----cCcc
Q psy1504 4 GITRPFVLGMFLSYFKVASTTATETAAVAGGALVLITFLNSLLNAHYNTMSSHIGLRMRAAVCSLVFRKCLK----LDMV 79 (153)
Q Consensus 4 ~~~~p~~~~~ii~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~lr~~if~k~l~----l~~~ 79 (153)
.+..|..++.+++.... .. . ...+..+...++..+...+..+.......+...+++.++.+.+.+.-.. .+.+
T Consensus 34 ~~~~~~~i~~~i~~~~~-~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lR~~l~~~l~~~~~~~~~~~~~G 110 (555)
T TIGR01194 34 IIALLASINNAIHEENF-LG-Q-GSLFSFGGLCLLALLFRIGADIFPAYAGMHIIANLRIALCEKILGAPIEEIDRRGAH 110 (555)
T ss_pred HHHHHHHHHHHHhcCCc-cc-c-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHhcCcc
Confidence 34566777777653211 10 1 1122233334445566777777788888889999999999888876443 3333
Q ss_pred cccCCChhHHHHHHHhhHhHHHHHHHHhHHHhHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q psy1504 80 STRETAPGQIVNLVSNDVSRFDLVTVTSHFMWSSPIISLIVTYIIYKDIGNAAFFGLAA 138 (153)
Q Consensus 80 ~~~~~~~G~i~~~~t~D~~~i~~~~~~~~~~~~~~i~ii~~~~~l~~~lg~~~l~~~~~ 138 (153)
..-..-+.|+ +.+.+... .....+.. ...++..++.++.+.+.+++.+++.+++
T Consensus 111 ~l~srl~~Dv-~~i~~~~~---~~~~~~~~-~~~~~~~~~~l~~~~~~L~li~l~~~~~ 164 (555)
T TIGR01194 111 NLIPLLTHDI-DQINAFLF---IFPPIAIA-LAIFFFCIAYLAYLSVPMFAITISAIII 164 (555)
T ss_pred hhhHHHhhhH-HHHHHHHH---HHHHHHHH-HHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 3222222333 22222222 22222222 2344456667777788888877666554
No 62
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=76.31 E-value=44 Score=27.86 Aligned_cols=39 Identities=18% Similarity=0.267 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHh
Q psy1504 35 ALVLITFLNSLLNAHYNTMSSHIGLRMRAAVCSLVFRKC 73 (153)
Q Consensus 35 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~lr~~if~k~ 73 (153)
..++..+...+......+...+...+++.++.+.+.+.-
T Consensus 210 ~~~~~~~~~~l~~~~~~~~~~~~~~~lr~~l~~~ll~~~ 248 (711)
T TIGR00958 210 LSIASSVSAGLRGGSFNYTMARINLRIREDLFRSLLRQD 248 (711)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 333444555555555666666777777777777776653
No 63
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=68.89 E-value=61 Score=26.24 Aligned_cols=22 Identities=9% Similarity=-0.010 Sum_probs=9.7
Q ss_pred HHHHHHHHHhHHHHHHHHHHHH
Q psy1504 50 YNTMSSHIGLRMRAAVCSLVFR 71 (153)
Q Consensus 50 ~~~~~~~~~~~~~~~lr~~if~ 71 (153)
..+...+...+...++|..+-+
T Consensus 72 ~~~~~~~~~~~~~~~~~~~l~~ 93 (588)
T PRK13657 72 AGVLVARHADRLAHRRRLAVLT 93 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444433
No 64
>PF00664 ABC_membrane: ABC transporter transmembrane region; InterPro: IPR001140 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). A variety of ATP-binding transport proteins have a six transmembrane helical region. They are all integral membrane proteins involved in a variety of transport systems. Members of this family include; the cystic fibrosis transmembrane conductance regulator (CFTR), bacterial leukotoxin secretion ATP-binding protein, multidrug resistance proteins, the yeast leptomycin B resistance protein, the mammalian sulphonylurea receptor and antigen peptide transporter 2. Many of these proteins have two such regions.; GO: 0005524 ATP binding, 0042626 ATPase activity, coupled to transmembrane movement of substances, 0006810 transport, 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 3G61_B 3G5U_B 3G60_A 3B60_D 3QF4_B 2HYD_A 2ONJ_A 4A82_B 4AA3_A 2YL4_A.
Probab=65.40 E-value=41 Score=23.04 Aligned_cols=29 Identities=3% Similarity=0.033 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHhhc
Q psy1504 47 NAHYNTMSSHIGLRMRAAVCSLVFRKCLK 75 (153)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~lr~~if~k~l~ 75 (153)
.....+.......+...+++.++.+++.+
T Consensus 54 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 82 (275)
T PF00664_consen 54 IFLFSYIYFYLSSRISQRIRKDLRKRLFE 82 (275)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333334444455555555555555544
No 65
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=65.05 E-value=72 Score=25.71 Aligned_cols=19 Identities=16% Similarity=0.251 Sum_probs=7.5
Q ss_pred HHHHHHHhHHHHHHHHHHH
Q psy1504 52 TMSSHIGLRMRAAVCSLVF 70 (153)
Q Consensus 52 ~~~~~~~~~~~~~lr~~if 70 (153)
+...+....++.++.+.+.
T Consensus 91 ~~~~~~~~~lr~~~~~~l~ 109 (582)
T PRK11176 91 WVSGKVVMTMRRRLFGHMM 109 (582)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333333344444444433
No 66
>PF05992 SbmA_BacA: SbmA/BacA-like family; InterPro: IPR009248 The Rhizobium meliloti (Sinorhizobium meliloti) bacA gene encodes a function that is essential for bacterial differentiation into bacteroids within plant cells in the symbiosis between R. meliloti and alfalfa. An Escherichia coli homologue of BacA, SbmA, is implicated in the uptake of microcins and bleomycin. This family is likely to be a subfamily of the ABC transporter family.; GO: 0005215 transporter activity, 0006810 transport, 0009276 Gram-negative-bacterium-type cell wall, 0016021 integral to membrane
Probab=64.03 E-value=59 Score=24.34 Aligned_cols=91 Identities=16% Similarity=0.153 Sum_probs=62.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhccCcccccCCChhHHHHHHHhhHhHHHHHHHH-
Q psy1504 28 TAAVAGGALVLITFLNSLLNAHYNTMSSHIGLRMRAAVCSLVFRKCLKLDMVSTRETAPGQIVNLVSNDVSRFDLVTVT- 106 (153)
Q Consensus 28 ~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~lr~~if~k~l~l~~~~~~~~~~G~i~~~~t~D~~~i~~~~~~- 106 (153)
+.+.....++...+..........+..++...+.|.+|.+-..+|=.++. +-.|- -.|+.+|+-++......
T Consensus 54 ef~~~~~~f~~ia~~~v~~~v~~~ff~shyiFrWR~Am~~yY~~~W~~~r------~IEGA-SQRIQEDtmrfa~i~E~L 126 (315)
T PF05992_consen 54 EFYAQILNFLWIAMIYVVLAVLNSFFVSHYIFRWRTAMNEYYMSHWPKLR------HIEGA-SQRIQEDTMRFAKIMEDL 126 (315)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhc------cCccH-HHHHHHHHHHHHHHHHHH
Confidence 33333333444444455555567777778889999999999999887772 22233 46999999999999965
Q ss_pred hHHHhHHHHHHHHHHHHHH
Q psy1504 107 SHFMWSSPIISLIVTYIIY 125 (153)
Q Consensus 107 ~~~~~~~~i~ii~~~~~l~ 125 (153)
...++.+..+.+..+-+++
T Consensus 127 gv~~i~simtliaFlPiL~ 145 (315)
T PF05992_consen 127 GVSFIRSIMTLIAFLPILW 145 (315)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4777777777666665554
No 67
>PF11674 DUF3270: Protein of unknown function (DUF3270); InterPro: IPR021688 This family of proteins with unknown function appears to be restricted to Streptococcus.
Probab=64.03 E-value=29 Score=20.79 Aligned_cols=53 Identities=6% Similarity=-0.003 Sum_probs=28.0
Q ss_pred HHHHHHHHhHHHhHHHHHHHHHHHHHHHHHh--HHHHHHHHHHHHHHHHHHhhhc
Q psy1504 99 RFDLVTVTSHFMWSSPIISLIVTYIIYKDIG--NAAFFGLAAAFCVIPLQLCSTY 151 (153)
Q Consensus 99 ~i~~~~~~~~~~~~~~i~ii~~~~~l~~~lg--~~~l~~~~~~~~~~~~~~~i~k 151 (153)
++++......-..-++++++++.+++...++ |+...++.+..+..-......|
T Consensus 35 kL~ELlFF~nIA~FcI~tvlfsFvfLs~kl~t~~Af~~Ai~~Sl~~~~~~~~~ik 89 (90)
T PF11674_consen 35 KLKELLFFANIAFFCIFTVLFSFVFLSLKLNTFWAFPLAILISLAITQLVRKFIK 89 (90)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 5566554444445567777777777776555 2333344443333333343333
No 68
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=59.62 E-value=94 Score=25.19 Aligned_cols=27 Identities=15% Similarity=-0.006 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHh
Q psy1504 47 NAHYNTMSSHIGLRMRAAVCSLVFRKC 73 (153)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~lr~~if~k~ 73 (153)
.....+..+....+....+...+-.++
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~lr~~l 104 (592)
T PRK10790 78 AAGLHYAQSLLFNRAAVGVVQQLRTDV 104 (592)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444444444333
No 69
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=55.29 E-value=1.1e+02 Score=24.60 Aligned_cols=18 Identities=11% Similarity=0.123 Sum_probs=6.7
Q ss_pred HHHHHHHhHHHHHHHHHH
Q psy1504 52 TMSSHIGLRMRAAVCSLV 69 (153)
Q Consensus 52 ~~~~~~~~~~~~~lr~~i 69 (153)
....+....++..+-+.+
T Consensus 80 ~~~~~~~~~lr~~l~~~~ 97 (571)
T TIGR02203 80 WVSNKVVRDIRVRMFEKL 97 (571)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333333333333333333
No 70
>COG1133 SbmA ABC-type long-chain fatty acid transport system, fused permease and ATPase components [Lipid metabolism]
Probab=55.08 E-value=88 Score=23.51 Aligned_cols=90 Identities=17% Similarity=0.192 Sum_probs=57.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhccCcccccCCChhHHHHHHHhhHhHHHHHHHHh-
Q psy1504 29 AAVAGGALVLITFLNSLLNAHYNTMSSHIGLRMRAAVCSLVFRKCLKLDMVSTRETAPGQIVNLVSNDVSRFDLVTVTS- 107 (153)
Q Consensus 29 ~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~lr~~if~k~l~l~~~~~~~~~~G~i~~~~t~D~~~i~~~~~~~- 107 (153)
.+..........++.........+..++-..|.|.+|.+--.+|=.|+..- .|. -.|+.+|+-+++...+.+
T Consensus 133 fY~~~~vF~~IA~~~v~i~vln~ffvShyiFrWRtAMn~~ym~~W~klrhI------EGa-sQRvQEDTmrFSstlE~LG 205 (405)
T COG1133 133 FYSLVGVFLGIALIAVVISVLNNFFVSHYIFRWRTAMNEYYMANWQKLRHI------EGA-SQRVQEDTMRFSSTLENLG 205 (405)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhHHHHHhhhhhccc------cch-HHHHHHHHHHHHHHHHHhh
Confidence 333333444555555566666777778888899999988777776665322 233 378888888888887654
Q ss_pred HHHhHHHHHHHHHHHHHH
Q psy1504 108 HFMWSSPIISLIVTYIIY 125 (153)
Q Consensus 108 ~~~~~~~i~ii~~~~~l~ 125 (153)
..++.+..+.+..+-.++
T Consensus 206 vsfi~siMTLiaFlPvL~ 223 (405)
T COG1133 206 VSFINAIMTLIAFLPVLF 223 (405)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 555566666655555554
No 71
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional
Probab=54.35 E-value=1.1e+02 Score=24.51 Aligned_cols=125 Identities=11% Similarity=0.043 Sum_probs=65.5
Q ss_pred hHHHHHHHhhhcccCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhc----cCccccc
Q psy1504 7 RPFVLGMFLSYFKVASTTATETAAVAGGALVLITFLNSLLNAHYNTMSSHIGLRMRAAVCSLVFRKCLK----LDMVSTR 82 (153)
Q Consensus 7 ~p~~~~~ii~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~lr~~if~k~l~----l~~~~~~ 82 (153)
+|++.+.++|.... .. .....+....++..+...+..+...+...+...+++.++-+.+.+.-.. .+.+..-
T Consensus 33 ~~~i~~~lid~~~~--~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lR~~l~~~ll~~~~~~~~~~~~g~~l 108 (547)
T PRK10522 33 IAFINQRLIETADT--SL--LVLPEFLGLLLLLMAVTLGSQLALTTLGHHFVYRLRSEFIKRILDTHVERIEQLGSASLL 108 (547)
T ss_pred HHHHHHHHhccccc--cc--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhccCccchH
Confidence 35666777775531 11 1111122223334456677777788888888999999999888876432 3333222
Q ss_pred CCChhHHHHHHHhhHhHHHHHHHHhHHHhHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q psy1504 83 ETAPGQIVNLVSNDVSRFDLVTVTSHFMWSSPIISLIVTYIIYKDIGNAAFFGLAAAF 140 (153)
Q Consensus 83 ~~~~G~i~~~~t~D~~~i~~~~~~~~~~~~~~i~ii~~~~~l~~~lg~~~l~~~~~~~ 140 (153)
..-+.|+-+. ..- +......+.. +..++..++.+..+.+.++...++++++..
T Consensus 109 srl~~dv~~i-~~~---~~~l~~~~~~-~~~~i~~~~~l~~~~~~l~li~l~~~~~~~ 161 (547)
T PRK10522 109 ASLTSDVRNI-TIA---FVRLPELVQG-IILTLGSAAYLAWLSPKMLLVTAIWMAVTI 161 (547)
T ss_pred HHHHhhHHHH-HHH---HHHHHHHHHH-HHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 2112233221 111 1222222223 233444555666677777777777766543
No 72
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=48.18 E-value=1.5e+02 Score=24.12 Aligned_cols=32 Identities=6% Similarity=0.070 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhh
Q psy1504 43 NSLLNAHYNTMSSHIGLRMRAAVCSLVFRKCL 74 (153)
Q Consensus 43 ~~~~~~~~~~~~~~~~~~~~~~lr~~if~k~l 74 (153)
..++.+...+...+...+...++|..+-+++.
T Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~ 96 (585)
T TIGR01192 65 FGVFNTIAYVLVAREADRLAHGRRATLLTEAF 96 (585)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555555566666666666666655554
No 73
>KOG0064|consensus
Probab=48.09 E-value=1.6e+02 Score=24.34 Aligned_cols=88 Identities=13% Similarity=0.229 Sum_probs=57.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhccCccccc----CCChhHHHHHHHhhHhHHHHHHHHh-HHH
Q psy1504 36 LVLITFLNSLLNAHYNTMSSHIGLRMRAAVCSLVFRKCLKLDMVSTR----ETAPGQIVNLVSNDVSRFDLVTVTS-HFM 110 (153)
Q Consensus 36 l~~~~l~~~~~~~~~~~~~~~~~~~~~~~lr~~if~k~l~l~~~~~~----~~~~G~i~~~~t~D~~~i~~~~~~~-~~~ 110 (153)
.+++.+-.+..+..-.|...+++...+..+..-+|++.++-. .|+. +...-+.=|.+|+|+..+.+....+ .++
T Consensus 163 W~liaiPAtFvNS~Iryle~klaLafrtrL~~h~y~~Y~snq-TyY~Vsn~d~~i~n~D~sLTeDI~~Fs~svahLysnL 241 (728)
T KOG0064|consen 163 WFLIAIPASFVNSAIRYLESKLALAFRTRLTRHAYDMYLSNQ-TFYKVSNLDSVIENADNSLTEDIAKFSDSVAHLYSNL 241 (728)
T ss_pred HHhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC-ceEEEecccchhcCccchhHHHHHHHHHHHHHHHHhh
Confidence 555666667777778888889999999999999999887665 3332 2222334467899999999887544 444
Q ss_pred hHHHHHHHHHHHHH
Q psy1504 111 WSSPIISLIVTYII 124 (153)
Q Consensus 111 ~~~~i~ii~~~~~l 124 (153)
..-.+-.+...+-+
T Consensus 242 tKP~lDl~l~s~~L 255 (728)
T KOG0064|consen 242 TKPVLDLILISFTL 255 (728)
T ss_pred hhHHHHHHHHHHHH
Confidence 32223444444333
No 74
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=44.22 E-value=1.7e+02 Score=23.59 Aligned_cols=28 Identities=11% Similarity=-0.010 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q psy1504 45 LLNAHYNTMSSHIGLRMRAAVCSLVFRK 72 (153)
Q Consensus 45 ~~~~~~~~~~~~~~~~~~~~lr~~if~k 72 (153)
.-.+.......+...+++..+-+.+.+.
T Consensus 77 ~~~~~~~~~~~~~~~~lr~~l~~~l~~~ 104 (576)
T TIGR02204 77 ARFYLVTWLGERVVADIRRAVFAHLISL 104 (576)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 3334444455555555666655555543
No 75
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=39.92 E-value=2e+02 Score=23.26 Aligned_cols=37 Identities=14% Similarity=0.196 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q psy1504 36 LVLITFLNSLLNAHYNTMSSHIGLRMRAAVCSLVFRK 72 (153)
Q Consensus 36 l~~~~l~~~~~~~~~~~~~~~~~~~~~~~lr~~if~k 72 (153)
.++..+...+.++.......+...+++.++-+.+.+.
T Consensus 46 ~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~ 82 (569)
T PRK10789 46 AVVVYLLRYVWRVLLFGASYQLAVELREDFYRQLSRQ 82 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 3344455555555555566666666776666666654
No 76
>PF04246 RseC_MucC: Positive regulator of sigma(E), RseC/MucC; InterPro: IPR007359 This bacterial family of integral membrane proteins represents a positive regulator of the sigma(E) transcription factor, namely RseC/MucC. The sigma(E) transcription factor is up-regulated by cell envelope protein misfolding, and regulates the expression of genes that are collectively termed ECF (devoted to Extra-Cellular Functions) []. In Pseudomonas aeruginosa, derepression of sigma(E) is associated with the alginate-overproducing phenotype characteristic of chronic respiratory tract colonization in cystic fibrosis patients. The mechanism by which RseC/MucC positively regulates the sigma(E) transcription factor is unknown. RseC is also thought to have a role in thiamine biosynthesis in Salmonella typhimurium []. In addition, this family also includes an N-terminal part of RnfF, a Rhodobacter capsulatus protein, of unknown function, that is essential for nitrogen fixation. This protein also contains a domain found in ApbE protein IPR003374 from INTERPRO, which is itself involved in thiamine biosynthesis.
Probab=35.34 E-value=96 Score=19.73 Aligned_cols=68 Identities=9% Similarity=-0.130 Sum_probs=31.4
Q ss_pred cCCChhHHHHHHHhhHhHHHHHHHHhHHHhHHHHHHHHHH--HHHHHHHhHHHHHHHHHHHHHHHHHHhhhc
Q psy1504 82 RETAPGQIVNLVSNDVSRFDLVTVTSHFMWSSPIISLIVT--YIIYKDIGNAAFFGLAAAFCVIPLQLCSTY 151 (153)
Q Consensus 82 ~~~~~G~i~~~~t~D~~~i~~~~~~~~~~~~~~i~ii~~~--~~l~~~lg~~~l~~~~~~~~~~~~~~~i~k 151 (153)
.+.+.||-+..-..|-..+...+ +.+++.....++++. ..+...-+++++.++..+.+.+.+-..+.|
T Consensus 50 ~~~~~GD~V~v~i~~~~~~~aa~--l~Y~lPll~li~g~~l~~~~~~~e~~~~l~~l~~l~~~~~~~~~~~~ 119 (135)
T PF04246_consen 50 IGAKVGDRVEVEIPESSLLKAAF--LVYLLPLLALIAGAVLGSYLGGSELWAILGGLLGLALGFLILRLFDR 119 (135)
T ss_pred CCCCCCCEEEEEeccchHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34566776655555444443332 122222211122211 122223556777777766666655555544
No 77
>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=34.32 E-value=2.7e+02 Score=23.16 Aligned_cols=21 Identities=14% Similarity=0.390 Sum_probs=8.4
Q ss_pred HHHHHHHHHhHHHHHHHHHHH
Q psy1504 50 YNTMSSHIGLRMRAAVCSLVF 70 (153)
Q Consensus 50 ~~~~~~~~~~~~~~~lr~~if 70 (153)
......+...+++.++-+.+.
T Consensus 203 ~~~~~~~~~~~l~~~~~~~l~ 223 (694)
T TIGR01846 203 FAHLTSRIDVELGARLYRHLL 223 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333333444444444444433
No 78
>KOG3415|consensus
Probab=34.20 E-value=1.2e+02 Score=19.05 Aligned_cols=41 Identities=7% Similarity=-0.076 Sum_probs=22.2
Q ss_pred HHHHHHHHHhhccCcccccCCChhHHHHHHHhhHhHHHHHH
Q psy1504 64 AVCSLVFRKCLKLDMVSTRETAPGQIVNLVSNDVSRFDLVT 104 (153)
Q Consensus 64 ~lr~~if~k~l~l~~~~~~~~~~G~i~~~~t~D~~~i~~~~ 104 (153)
.++...-+|+.+-+....||..-+|++--...-+.-+..++
T Consensus 19 tl~~s~~~kl~~~da~W~DKdellDViyW~rQVi~l~lGvi 59 (129)
T KOG3415|consen 19 TLSESKAAKLTDSDAEWPDKDELLDVIYWIRQVIGLILGVI 59 (129)
T ss_pred cccHHHHHhcCCccccCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555666666655555555555666555444444444444
No 79
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=33.74 E-value=2.5e+02 Score=22.61 Aligned_cols=35 Identities=17% Similarity=0.146 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q psy1504 38 LITFLNSLLNAHYNTMSSHIGLRMRAAVCSLVFRK 72 (153)
Q Consensus 38 ~~~l~~~~~~~~~~~~~~~~~~~~~~~lr~~if~k 72 (153)
+..+......+...+...+...+++.++.+.+.+-
T Consensus 64 ~~~v~~~~~~~~~~~~~~~~~~~lr~~~~~~l~~~ 98 (567)
T COG1132 64 LGGVLRALQSYLGSRLGQKIVADLRRDLFEKLLRL 98 (567)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 34444444444444444455555555555444433
No 80
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=32.78 E-value=2.9e+02 Score=22.97 Aligned_cols=29 Identities=14% Similarity=0.174 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q psy1504 43 NSLLNAHYNTMSSHIGLRMRAAVCSLVFR 71 (153)
Q Consensus 43 ~~~~~~~~~~~~~~~~~~~~~~lr~~if~ 71 (153)
..+-.+.......+...+++.++-+.+.+
T Consensus 193 ~~~~~~~~~~~~~~~~~~l~~~~~~~ll~ 221 (686)
T TIGR03797 193 QLAQSLAVLRLETRMDASLQAAVWDRLLR 221 (686)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 33333333444444444444444444443
No 81
>PF08711 Med26: TFIIS helical bundle-like domain; InterPro: IPR017923 Transcription factor IIS (TFIIS) is a transcription elongation factor that increases the overall transcription rate of RNA polymerase II by reactivating transcription elongation complexes that have arrested transcription. The three structural domains of TFIIS are conserved from yeast to human. The 80 or so N-terminal residues form a protein interaction domain containing a conserved motif, which has been called the LW motif because of the invariant leucine and tryptophan residues it contains. Although the N-terminal domain is not needed for transcriptional activity, a similar sequence has been identified in other transcription factors and proteins that are predominantly nuclear localized [, ]: MED26 (also known as CRSP70 and ARC70), a subunit of the Mediator complex, which is required for the activity of the enhancer-binding protein Sp1. Elongin A, a subunit of a transcription elongation factor previously known as SIII. It increases the rate of transcription by suppressing transient pausing of the elongation complex. PPP1R10, a nuclear regulatory subunit of protein phosphatase 1 that was previously known as p99, FB19 or PNUTS. PIBP, a small hypothetical protein that could be a phosphoinositide binding protein. IWS1, which is thought to function in both transcription initiation and elongation. The TFIIS N-terminal domain is a compact four-helix bundle. The hydrophobic core residues of helices 2, 3, and 4 are well conserved among TFIIS domains, although helix 1 is less conserved []. ; GO: 0003677 DNA binding, 0006351 transcription, DNA-dependent, 0005634 nucleus; PDB: 1EO0_A 3OAK_A 3NFQ_B 3O8Z_A 1WJT_A 2XPL_A 2XPO_A 2XPP_A 2XPN_A.
Probab=29.79 E-value=89 Score=16.15 Aligned_cols=46 Identities=15% Similarity=0.200 Sum_probs=28.4
Q ss_pred HHHhhccCccc--ccCCChhHHHHHHHhh--HhHHHHHHHHhHHHhHHHH
Q psy1504 70 FRKCLKLDMVS--TRETAPGQIVNLVSND--VSRFDLVTVTSHFMWSSPI 115 (153)
Q Consensus 70 f~k~l~l~~~~--~~~~~~G~i~~~~t~D--~~~i~~~~~~~~~~~~~~i 115 (153)
.+.+.++|+.. ..+.+.|+.++.+... ...+.+....+..=|..++
T Consensus 3 L~~L~~l~it~~~L~~T~IGk~V~~l~k~~~~~~i~~~A~~Li~~Wk~~v 52 (53)
T PF08711_consen 3 LKVLEKLPITVELLKSTGIGKAVNKLRKHSENPEIRKLAKELIKKWKRIV 52 (53)
T ss_dssp HHHHHCSS-SHHHHHHHSHHHHHHHHHHCTS-HHHHHHHHHHHHHHHHHH
T ss_pred HHHhhcCCCCHHHHHhCChhHHHHHHHcCCCCHHHHHHHHHHHHHHhHhc
Confidence 34455555443 3567889999998876 5666666666666665543
No 82
>KOG3758|consensus
Probab=29.44 E-value=1.7e+02 Score=24.17 Aligned_cols=52 Identities=21% Similarity=0.154 Sum_probs=41.6
Q ss_pred HHHhHHHHHHHHHHHHHhhccCcccccCC-ChhHHHHHHHhhHhHHHHHHHHh
Q psy1504 56 HIGLRMRAAVCSLVFRKCLKLDMVSTRET-APGQIVNLVSNDVSRFDLVTVTS 107 (153)
Q Consensus 56 ~~~~~~~~~lr~~if~k~l~l~~~~~~~~-~~G~i~~~~t~D~~~i~~~~~~~ 107 (153)
....+.++++|.++.++.++....+.++. +.-..+-++.+|++++.+....+
T Consensus 45 eN~~~~RRnLr~~iE~~~l~iN~e~l~ef~~i~~~l~~v~e~v~km~~t~~~l 97 (655)
T KOG3758|consen 45 ENSLRARRNLRSDIESRLLKINEEFLKEFKEIKRRLDRVSEDVEKMANTCDKL 97 (655)
T ss_pred hhhHHHHhhhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55667799999999999999987776653 45667788899999998888544
No 83
>PF15176 LRR19-TM: Leucine-rich repeat family 19 TM domain
Probab=29.37 E-value=76 Score=19.43 Aligned_cols=10 Identities=10% Similarity=0.192 Sum_probs=4.9
Q ss_pred HHHHHHHHHH
Q psy1504 130 NAAFFGLAAA 139 (153)
Q Consensus 130 ~~~l~~~~~~ 139 (153)
|.+++|+.+.
T Consensus 17 W~~LVGVv~~ 26 (102)
T PF15176_consen 17 WPFLVGVVVT 26 (102)
T ss_pred cHhHHHHHHH
Confidence 4455555443
No 84
>PF08700 Vps51: Vps51/Vps67; InterPro: IPR014812 The VFT tethering complex (also known as GARP complex, Golgi associated retrograde protein complex, Vps53 tethering complex) is a conserved eukaryotic docking complex which is involved in recycling of proteins from endosomes to the late Golgi. Vps51 (also known as Vps67) is a subunit of VFT and interacts with the SNARE Tlg1 [].
Probab=28.11 E-value=1.3e+02 Score=17.29 Aligned_cols=50 Identities=10% Similarity=0.064 Sum_probs=37.7
Q ss_pred HHHHhHHHHHHHHHHHHHhhccCcccccCCChhHHHHHHHhhHhHHHHHHHHhHHHh
Q psy1504 55 SHIGLRMRAAVCSLVFRKCLKLDMVSTRETAPGQIVNLVSNDVSRFDLVTVTSHFMW 111 (153)
Q Consensus 55 ~~~~~~~~~~lr~~if~k~l~l~~~~~~~~~~G~i~~~~t~D~~~i~~~~~~~~~~~ 111 (153)
.........++|..+|++...+ ....+-+..+.+|+..+.+....+...+
T Consensus 32 ~~~i~~~~~eLr~~V~~nY~~f-------I~as~~I~~m~~~~~~l~~~l~~l~~~~ 81 (87)
T PF08700_consen 32 RQEIEEKDEELRKLVYENYRDF-------IEASDEISSMENDLSELRNLLSELQQSI 81 (87)
T ss_pred HHHHHHHHHHHHHHHHhhHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556677889999999987766 4567888889999988888876554443
No 85
>COG0598 CorA Mg2+ and Co2+ transporters [Inorganic ion transport and metabolism]
Probab=27.57 E-value=2.6e+02 Score=20.81 Aligned_cols=25 Identities=12% Similarity=0.042 Sum_probs=11.8
Q ss_pred HHhHHHHHHHHHHHHHHHHHHhhhcc
Q psy1504 127 DIGNAAFFGLAAAFCVIPLQLCSTYT 152 (153)
Q Consensus 127 ~lg~~~l~~~~~~~~~~~~~~~i~k~ 152 (153)
.-|++...++.+++..++. .++-||
T Consensus 295 ~~Gy~~~l~~m~~~~~~~~-~~frrk 319 (322)
T COG0598 295 PYGYPIALILMLLLALLLY-LYFRRK 319 (322)
T ss_pred cccHHHHHHHHHHHHHHHH-HHHHhc
Confidence 4465555555544444444 344333
No 86
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=26.60 E-value=3.8e+02 Score=22.34 Aligned_cols=21 Identities=14% Similarity=0.200 Sum_probs=8.3
Q ss_pred HHHHHHHHHhHHHHHHHHHHH
Q psy1504 50 YNTMSSHIGLRMRAAVCSLVF 70 (153)
Q Consensus 50 ~~~~~~~~~~~~~~~lr~~if 70 (153)
......+...+++.++-+.+.
T Consensus 211 ~~~~~~~~~~~l~~~~~~~ll 231 (694)
T TIGR03375 211 LDVAGKKADLILSAKLFERVL 231 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 333333444444444444333
No 87
>PF11120 DUF2636: Protein of unknown function (DUF2636); InterPro: IPR019995 Members of this protein family are found invariably together with genes of bacterial cellulose biosynthesis, and are presumed to be involved in the process []. Members average about 63 amino acids in length and are not uncharacterised. The gene has been designated both YhjT and BcsF (bacterial cellulose synthesis F).
Probab=24.36 E-value=1.4e+02 Score=16.55 Aligned_cols=21 Identities=29% Similarity=0.373 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHhHHH
Q psy1504 112 SSPIISLIVTYIIYKDIGNAA 132 (153)
Q Consensus 112 ~~~i~ii~~~~~l~~~lg~~~ 132 (153)
++++++++.+.+.+.-+|+.+
T Consensus 4 ~DiiQii~l~AlI~~pLGyl~ 24 (62)
T PF11120_consen 4 SDIIQIIILCALIFFPLGYLA 24 (62)
T ss_pred HHHHHHHHHHHHHHHhHHHHH
Confidence 456666666666666666543
No 88
>PF14418 OHA: OST-HTH Associated domain
Probab=24.19 E-value=1.3e+02 Score=17.16 Aligned_cols=29 Identities=17% Similarity=-0.001 Sum_probs=21.0
Q ss_pred HHHHHHHhhccCcccccCCChhHHHHHHH
Q psy1504 66 CSLVFRKCLKLDMVSTRETAPGQIVNLVS 94 (153)
Q Consensus 66 r~~if~k~l~l~~~~~~~~~~G~i~~~~t 94 (153)
|...-+.+.+..+..+++.+.|++...+.
T Consensus 12 RY~~A~~Lk~~gp~~lr~l~Lg~i~~iVq 40 (75)
T PF14418_consen 12 RYGMAQFLKKRGPPFLRSLSLGDICHIVQ 40 (75)
T ss_pred HHHHHHHHHhcCchhhcCCcHHHHHHHHH
Confidence 44455566677788889999999876654
No 89
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=24.09 E-value=4.1e+02 Score=21.87 Aligned_cols=106 Identities=16% Similarity=0.150 Sum_probs=67.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhccCcccccCCChhHH-----HHHHHhhHhHHHHHHHHhHHH
Q psy1504 36 LVLITFLNSLLNAHYNTMSSHIGLRMRAAVCSLVFRKCLKLDMVSTRETAPGQI-----VNLVSNDVSRFDLVTVTSHFM 110 (153)
Q Consensus 36 l~~~~l~~~~~~~~~~~~~~~~~~~~~~~lr~~if~k~l~l~~~~~~~~~~G~i-----~~~~t~D~~~i~~~~~~~~~~ 110 (153)
.++..++..+.+....+...+.+.+...+.|..+=++.++--. +.+.-.+ =+..+-=++.+++.-.++-..
T Consensus 42 ~~~~l~~~~~lRa~l~~~~~~~~~~aa~~~~~~LR~~~l~~l~----~~gp~~~~~~~~g~~atl~~egve~l~~Y~~ry 117 (559)
T COG4988 42 LLILLLIALVLRAFLAWLRERLGYRAAAKVRASLRQLVLDKLA----KLGPAFIAQKPAGSAATLALEGIEQLEPYYARY 117 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----hCChhhhcCCCcchHHHHHHHHHHHHHHHHHHH
Confidence 4445556667777788888889999988888888777664322 2222222 334444557777766677777
Q ss_pred hHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q psy1504 111 WSSPIISLIVTYIIYKDIGNAAFFGLAAAFCVIPL 145 (153)
Q Consensus 111 ~~~~i~ii~~~~~l~~~lg~~~l~~~~~~~~~~~~ 145 (153)
..+-.....+-..++..+.|.-+.+-.+++++.|+
T Consensus 118 LPq~~~~~ivp~~i~i~v~~~~w~aalIllit~Pl 152 (559)
T COG4988 118 LPQMFLSAIVPLLILIAIFFFNWAAALILLITAPL 152 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 77777666666666666666555555555566554
No 90
>COG4270 Predicted membrane protein [Function unknown]
Probab=23.48 E-value=1.5e+02 Score=18.73 Aligned_cols=42 Identities=21% Similarity=0.176 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHH-HHHHHHHHHHhhhccC
Q psy1504 112 SSPIISLIVTYIIYKDIGNAAFFGLA-AAFCVIPLQLCSTYTK 153 (153)
Q Consensus 112 ~~~i~ii~~~~~l~~~lg~~~l~~~~-~~~~~~~~~~~i~k~~ 153 (153)
+..+++.+....+...-...+--|+. ..+...|-|.+.+.||
T Consensus 49 SG~fEilgglaLlip~~s~~aa~gl~~l~laVfPANiYMa~h~ 91 (131)
T COG4270 49 SGIFEILGGLALLIPAPSQAAAWGLIILLLAVFPANIYMAQHK 91 (131)
T ss_pred HHHHHHHhhhhhhcCCcHHHHHhhHHHHHHHHcchHHHHHhhc
Confidence 44555555555554332223333333 3455577777776664
No 91
>PHA02815 hypothetical protein; Provisional
Probab=22.71 E-value=1.5e+02 Score=16.29 Aligned_cols=23 Identities=22% Similarity=0.459 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHH
Q psy1504 115 IISLIVTYIIYKDIGNAAFFGLA 137 (153)
Q Consensus 115 i~ii~~~~~l~~~lg~~~l~~~~ 137 (153)
+.+.+.+.++++.+.|+.+++..
T Consensus 5 ~~I~~~~ylLl~Lv~wsyv~~~~ 27 (64)
T PHA02815 5 IVIVISLYLLFQLVNCFYLFKLF 27 (64)
T ss_pred EeHHHHHHHHHHHHHHHHHHHHH
Confidence 34666777888888898888765
No 92
>TIGR00383 corA magnesium Mg(2+) and cobalt Co(2+) transport protein (corA). The article in Microb Comp Genomics 1998;3(3):151-69 (Medline:98448512) discusses this family and suggests that some members may have functions other than Mg2+ transport.
Probab=22.67 E-value=3.2e+02 Score=20.07 Aligned_cols=15 Identities=20% Similarity=0.233 Sum_probs=6.8
Q ss_pred HHhHHHHHHHHHHHH
Q psy1504 127 DIGNAAFFGLAAAFC 141 (153)
Q Consensus 127 ~lg~~~l~~~~~~~~ 141 (153)
.-|+....++.+++.
T Consensus 291 ~~gy~~~l~~m~~i~ 305 (318)
T TIGR00383 291 KYGYPAVLIVMAVIA 305 (318)
T ss_pred hhHHHHHHHHHHHHH
Confidence 345554444443333
No 93
>PRK11546 zraP zinc resistance protein; Provisional
Probab=21.62 E-value=2.2e+02 Score=18.71 Aligned_cols=47 Identities=11% Similarity=0.104 Sum_probs=36.2
Q ss_pred HhHHHHHHHHHHHHHhhccCcccccCCChhHHHHHHHhhHhHHHHHH
Q psy1504 58 GLRMRAAVCSLVFRKCLKLDMVSTRETAPGQIVNLVSNDVSRFDLVT 104 (153)
Q Consensus 58 ~~~~~~~lr~~if~k~l~l~~~~~~~~~~G~i~~~~t~D~~~i~~~~ 104 (153)
...-...+|+.++.|-..+..-...+.+..+-++-.+.++..+.+-+
T Consensus 59 f~~~t~~LRqqL~aKr~ELnALl~~~~pD~~kI~aL~kEI~~Lr~kL 105 (143)
T PRK11546 59 FYAQTSALRQQLVSKRYEYNALLTANPPDSSKINAVAKEMENLRQSL 105 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHH
Confidence 34456789999999988877777777777887888888888887755
No 94
>COG3088 CcmH Uncharacterized protein involved in biosynthesis of c-type cytochromes [Posttranslational modification, protein turnover, chaperones]
Probab=20.91 E-value=2.7e+02 Score=18.54 Aligned_cols=31 Identities=10% Similarity=0.133 Sum_probs=23.7
Q ss_pred HhHHHHHHHHHHHHHhhccCcccccCCChhHHHHHHHh
Q psy1504 58 GLRMRAAVCSLVFRKCLKLDMVSTRETAPGQIVNLVSN 95 (153)
Q Consensus 58 ~~~~~~~lr~~if~k~l~l~~~~~~~~~~G~i~~~~t~ 95 (153)
...+..|||..+|+.+. +.++.++|+..|+.
T Consensus 59 nA~IA~DlR~~V~e~l~-------eGkS~~qIid~mVa 89 (153)
T COG3088 59 NAPIARDLRHQVYELLQ-------EGKSDQQIIDYMVA 89 (153)
T ss_pred ccHHHHHHHHHHHHHHH-------cCCcHHHHHHHHHH
Confidence 34677888888888776 45677899888865
No 95
>KOG0058|consensus
Probab=20.30 E-value=5.5e+02 Score=21.92 Aligned_cols=47 Identities=11% Similarity=0.191 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhccC
Q psy1504 31 VAGGALVLITFLNSLLNAHYNTMSSHIGLRMRAAVCSLVFRKCLKLD 77 (153)
Q Consensus 31 ~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~lr~~if~k~l~l~ 77 (153)
..+.+.++..+...+-....++...++..+++.++-..+-++=...-
T Consensus 193 ~l~~l~~~~a~~~~~r~~~~~~a~~rv~~rlR~~lF~sil~QdiaFF 239 (716)
T KOG0058|consen 193 ILLGLFLIGALANAIRGGLLQYAGERVVARLRTDLFRSLLRQDIAFF 239 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Confidence 44444555556666666677888888888999888877776644443
Done!