Query psy1504
Match_columns 153
No_of_seqs 118 out of 1082
Neff 10.1
Searched_HMMs 29240
Date Fri Aug 16 18:53:49 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1504.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/1504hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3qf4_B Uncharacterized ABC tra 99.7 9.5E-15 3.2E-19 114.2 17.0 146 3-150 52-198 (598)
2 4a82_A Cystic fibrosis transme 99.6 1.1E-14 3.6E-19 113.5 13.4 148 3-150 29-182 (578)
3 3qf4_A ABC transporter, ATP-bi 99.6 3.6E-14 1.2E-18 110.7 16.2 130 3-134 38-168 (587)
4 3b5x_A Lipid A export ATP-bind 99.6 1.3E-13 4.4E-18 107.5 18.8 146 3-150 40-186 (582)
5 3b60_A Lipid A export ATP-bind 99.6 1.1E-13 3.8E-18 107.9 16.5 145 4-150 41-186 (582)
6 2yl4_A ATP-binding cassette SU 99.6 2.2E-13 7.6E-18 106.4 17.3 143 3-145 34-178 (595)
7 4f4c_A Multidrug resistance pr 99.5 5.6E-13 1.9E-17 111.9 13.9 119 32-150 138-257 (1321)
8 3g5u_A MCG1178, multidrug resi 99.4 8.1E-12 2.8E-16 104.8 14.6 97 31-127 109-206 (1284)
9 4f4c_A Multidrug resistance pr 99.4 5.1E-11 1.7E-15 100.2 18.5 117 29-145 793-912 (1321)
10 3g5u_A MCG1178, multidrug resi 99.0 1.1E-08 3.6E-13 86.2 15.3 136 6-141 723-866 (1284)
11 3qf4_A ABC transporter, ATP-bi 84.2 13 0.00045 28.9 11.3 31 41-71 78-108 (587)
12 3qf4_B Uncharacterized ABC tra 74.4 29 0.00098 27.1 11.8 18 51-68 102-119 (598)
13 3b60_A Lipid A export ATP-bind 68.6 39 0.0013 26.2 11.7 31 44-74 75-105 (582)
14 2yl4_A ATP-binding cassette SU 67.4 42 0.0014 26.1 12.4 22 49-70 85-106 (595)
15 4a82_A Cystic fibrosis transme 65.5 30 0.001 26.8 7.7 31 41-71 76-106 (578)
16 1tdp_A Carnobacteriocin B2 imm 41.6 16 0.00056 21.8 2.0 41 58-99 20-60 (111)
No 1
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=99.65 E-value=9.5e-15 Score=114.15 Aligned_cols=146 Identities=16% Similarity=0.116 Sum_probs=116.6
Q ss_pred hhchhHHHHHHHhhhcccCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhccCccccc
Q psy1504 3 LGITRPFVLGMFLSYFKVASTTATETAAVAGGALVLITFLNSLLNAHYNTMSSHIGLRMRAAVCSLVFRKCLKLDMVSTR 82 (153)
Q Consensus 3 ~~~~~p~~~~~ii~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~lr~~if~k~l~l~~~~~~ 82 (153)
+.+..|++++.++|.+.... +......++..++++.++..++.+...+...+.+.++..++|..+|+|++++|..+++
T Consensus 52 ~~~~~p~~~~~~id~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~~~~ 129 (598)
T 3qf4_B 52 LGVLSPYLIGKTIDVVFVPR--RFDLLPRYMLILGTIYALTSLLFWLQGKIMLTLSQDVVFRLRKELFEKLQRVPVGFFD 129 (598)
T ss_dssp HHHHHHHHHHHHHHHTTTTT--CGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCTHHHH
T ss_pred HHHHHHHHHHHHHHHHHccC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHc
Confidence 45678999999998874322 2222334555666777888899999999999999999999999999999999999999
Q ss_pred CCChhHHHHHHHhhHhHHHHHH-HHhHHHhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhh
Q psy1504 83 ETAPGQIVNLVSNDVSRFDLVT-VTSHFMWSSPIISLIVTYIIYKDIGNAAFFGLAAAFCVIPLQLCST 150 (153)
Q Consensus 83 ~~~~G~i~~~~t~D~~~i~~~~-~~~~~~~~~~i~ii~~~~~l~~~lg~~~l~~~~~~~~~~~~~~~i~ 150 (153)
++++|+++|++++|++.+++.+ ..++.++..++.+++++++++..-++.+++.+...++..++...+.
T Consensus 130 ~~~~G~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~l~l~~l~~~~l~~~~~~~~~ 198 (598)
T 3qf4_B 130 RTPHGDIISRVINDVDNINNVLGNSIIQFFSGIVTLAGAVIMMFRVNVILSLVTLSIVPLTVLITQIVS 198 (598)
T ss_dssp HSCHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHTTHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999998 4688999999999999888887666666666555555555544443
No 2
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=99.61 E-value=1.1e-14 Score=113.48 Aligned_cols=148 Identities=12% Similarity=0.083 Sum_probs=113.7
Q ss_pred hhchhHHHHHHHhhhcccCcccc-hHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhccC
Q psy1504 3 LGITRPFVLGMFLSYFKVASTTA-TETA----AVAGGALVLITFLNSLLNAHYNTMSSHIGLRMRAAVCSLVFRKCLKLD 77 (153)
Q Consensus 3 ~~~~~p~~~~~ii~~~~~~~~~~-~~~~----~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~lr~~if~k~l~l~ 77 (153)
+.+..|++++.++|.+...++.. .... +.++..++++.++..++.+...+...+.+.++..++|..+|+|++++|
T Consensus 29 ~~~~~p~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~~ 108 (578)
T 4a82_A 29 IPMLIPLLIKYAIDGVINNHALTTDEKVHHLTIAIGIALFIFVIVRPPIEFIRQYLAQWTSNKILYDIRKKLYNHLQALS 108 (578)
T ss_dssp HHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Confidence 45678999999998764322111 1111 334445666677888899999999999999999999999999999999
Q ss_pred cccccCCChhHHHHHHHhhHhHHHHHHH-HhHHHhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhh
Q psy1504 78 MVSTRETAPGQIVNLVSNDVSRFDLVTV-TSHFMWSSPIISLIVTYIIYKDIGNAAFFGLAAAFCVIPLQLCST 150 (153)
Q Consensus 78 ~~~~~~~~~G~i~~~~t~D~~~i~~~~~-~~~~~~~~~i~ii~~~~~l~~~lg~~~l~~~~~~~~~~~~~~~i~ 150 (153)
..+++++++|+++|++++|++++++.+. .++.++.+++.+++++++++..-++.+++++...++..++...+.
T Consensus 109 ~~~~~~~~~G~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~l~l~~l~~~~l~~~~~~~~~ 182 (578)
T 4a82_A 109 ARFYANNQVGQVISRVINDVEQTKDFILTGLMNIWLDCITIIIALSIMFFLDVKLTLAALFIFPFYILTVYVFF 182 (578)
T ss_dssp HHHHHTSCHHHHHHHHHHHHHHTHHHHHCCCCCHHHHHHHHHHHHHHHHHHCTTTHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999985 578889999999888888887666556555544444444444433
No 3
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=99.61 E-value=3.6e-14 Score=110.66 Aligned_cols=130 Identities=10% Similarity=0.141 Sum_probs=102.4
Q ss_pred hhchhHHHHHHHhhhcccCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhccCccccc
Q psy1504 3 LGITRPFVLGMFLSYFKVASTTATETAAVAGGALVLITFLNSLLNAHYNTMSSHIGLRMRAAVCSLVFRKCLKLDMVSTR 82 (153)
Q Consensus 3 ~~~~~p~~~~~ii~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~lr~~if~k~l~l~~~~~~ 82 (153)
+.+..|++++.++|.....+ +....+.+...++++.++..++.+...+...+.+.++..++|..+|+|++++|..+++
T Consensus 38 ~~~~~p~~~~~~id~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~~~~ 115 (587)
T 3qf4_A 38 CDLSQPTLLARIVDEGIARG--DFSLVLKTGILMLIVALIGAVGGIGCTVFASYASQNFGADLRRDLFRKVLSFSISNVN 115 (587)
T ss_dssp HHHHHHHHHHHHHHHTTTTT--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHccC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHc
Confidence 45678999999998764322 2223334455566667778888888889999999999999999999999999999999
Q ss_pred CCChhHHHHHHHhhHhHHHHHHH-HhHHHhHHHHHHHHHHHHHHHHHhHHHHH
Q psy1504 83 ETAPGQIVNLVSNDVSRFDLVTV-TSHFMWSSPIISLIVTYIIYKDIGNAAFF 134 (153)
Q Consensus 83 ~~~~G~i~~~~t~D~~~i~~~~~-~~~~~~~~~i~ii~~~~~l~~~lg~~~l~ 134 (153)
++++|+++|++++|++.+++.+. .+..++..++.+++++++++..-++.+++
T Consensus 116 ~~~~G~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~l~l~ 168 (587)
T 3qf4_A 116 RFHTSSLITRLTNDVTQLQNLVMMLLRIVVRAPLLFVGGIVMAVSINVKLSSV 168 (587)
T ss_dssp HSCHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHCTTTTHH
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999984 56777888888888877776543333333
No 4
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=99.60 E-value=1.3e-13 Score=107.49 Aligned_cols=146 Identities=8% Similarity=-0.032 Sum_probs=109.8
Q ss_pred hhchhHHHHHHHhhhcccCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhccCccccc
Q psy1504 3 LGITRPFVLGMFLSYFKVASTTATETAAVAGGALVLITFLNSLLNAHYNTMSSHIGLRMRAAVCSLVFRKCLKLDMVSTR 82 (153)
Q Consensus 3 ~~~~~p~~~~~ii~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~lr~~if~k~l~l~~~~~~ 82 (153)
+.+..|.+++.++|.+...+ ........+..++++.++..++.+...+...+.+.++..++|..+|+|++++|..+++
T Consensus 40 ~~~~~~~~~~~~id~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~~~~ 117 (582)
T 3b5x_A 40 ADTYMISLLKPLLDEGFGNA--ESNFLRILPFMILGLMFVRGLSGFASSYCLSWVSGNVVMQMRRRLFNHFMHMPVRFFD 117 (582)
T ss_pred HHHHHHHHHHHHHHHHhccC--chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHC
Confidence 34567888888888764211 1121222233355667788888999999999999999999999999999999999999
Q ss_pred CCChhHHHHHHHhhHhHHHHHH-HHhHHHhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhh
Q psy1504 83 ETAPGQIVNLVSNDVSRFDLVT-VTSHFMWSSPIISLIVTYIIYKDIGNAAFFGLAAAFCVIPLQLCST 150 (153)
Q Consensus 83 ~~~~G~i~~~~t~D~~~i~~~~-~~~~~~~~~~i~ii~~~~~l~~~lg~~~l~~~~~~~~~~~~~~~i~ 150 (153)
++++|++++++++|++.+++.+ ..++.++..++.++++++++++.-++.+++.+..+++...+...+.
T Consensus 118 ~~~~g~l~~rl~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~l~li~l~~~~l~~~~~~~~~ 186 (582)
T 3b5x_A 118 QESTGGLLSRITYDSEQVAGATSRALVSIVREGASIIGLLTLMFWNSWQLSLVLIVVAPVVAFAISFVS 186 (582)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999987 5688888999888888888876544455555444444444444333
No 5
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=99.58 E-value=1.1e-13 Score=107.86 Aligned_cols=145 Identities=6% Similarity=-0.061 Sum_probs=109.2
Q ss_pred hchhHHHHHHHhhhcccCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhccCcccccC
Q psy1504 4 GITRPFVLGMFLSYFKVASTTATETAAVAGGALVLITFLNSLLNAHYNTMSSHIGLRMRAAVCSLVFRKCLKLDMVSTRE 83 (153)
Q Consensus 4 ~~~~p~~~~~ii~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~lr~~if~k~l~l~~~~~~~ 83 (153)
.+..|++++.++|.+...+ +.......+..++++.++..++.+...+...+.+.++..++|..+|+|++++|..++++
T Consensus 41 ~~~~~~~~~~~id~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~l~~~~~~~~~~ 118 (582)
T 3b60_A 41 DTFMLSLLKPLLDDGFGKT--DRSVLLWMPLVVIGLMILRGITSYISSYCISWVSGKVVMTMRRRLFGHMMGMPVAFFDK 118 (582)
T ss_dssp HHHHHHHHTHHHHSSTTST--THHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCSTHHHH
T ss_pred HHHHHHHHHHHHHHHhccC--chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHCC
Confidence 4567888888888764211 11222222333556677888889999999999999999999999999999999999999
Q ss_pred CChhHHHHHHHhhHhHHHHHH-HHhHHHhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhh
Q psy1504 84 TAPGQIVNLVSNDVSRFDLVT-VTSHFMWSSPIISLIVTYIIYKDIGNAAFFGLAAAFCVIPLQLCST 150 (153)
Q Consensus 84 ~~~G~i~~~~t~D~~~i~~~~-~~~~~~~~~~i~ii~~~~~l~~~lg~~~l~~~~~~~~~~~~~~~i~ 150 (153)
+++|++++++++|++.+++.+ ..++.++..++..++++++++..-++.+++.+...++...+...+.
T Consensus 119 ~~~g~l~~r~~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~l~li~l~~~~l~~~~~~~~~ 186 (582)
T 3b60_A 119 QSTGTLLSRITYDSEQVASSSSGALITVVREGASIIGLFIMMFYYSWQLSIILVVLAPIVSIAIRVVS 186 (582)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHHHHHHHH
T ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999987 5688889999988888888876544445554444444444444333
No 6
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=99.57 E-value=2.2e-13 Score=106.42 Aligned_cols=143 Identities=15% Similarity=0.143 Sum_probs=106.2
Q ss_pred hhchhHHHHHHHhhhcccCcccch-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhccCcccc
Q psy1504 3 LGITRPFVLGMFLSYFKVASTTAT-ETAAVAGGALVLITFLNSLLNAHYNTMSSHIGLRMRAAVCSLVFRKCLKLDMVST 81 (153)
Q Consensus 3 ~~~~~p~~~~~ii~~~~~~~~~~~-~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~lr~~if~k~l~l~~~~~ 81 (153)
+.+..|++++.++|.+...+.... .....+...++++.++..++.+...+...+.+.++..++|..+|+|++++|..++
T Consensus 34 ~~~~~p~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~l~~~~~~~~ 113 (595)
T 2yl4_A 34 ISMSAPFFLGKIIDVIYTNPTVDYSDNLTRLCLGLSAVFLCGAAANAIRVYLMQTSGQRIVNRLRTSLFSSILRQEVAFF 113 (595)
T ss_dssp HHTTHHHHHHHHHHHHHHCTTSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHH
Confidence 346788889999887642111111 1222333345556677778888888899999999999999999999999999999
Q ss_pred cCCChhHHHHHHHhhHhHHHHHH-HHhHHHhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q psy1504 82 RETAPGQIVNLVSNDVSRFDLVT-VTSHFMWSSPIISLIVTYIIYKDIGNAAFFGLAAAFCVIPL 145 (153)
Q Consensus 82 ~~~~~G~i~~~~t~D~~~i~~~~-~~~~~~~~~~i~ii~~~~~l~~~lg~~~l~~~~~~~~~~~~ 145 (153)
+++++|++++++++|++.+++.+ ..+..++..++..++++++++..-++.+++.+...++...+
T Consensus 114 ~~~~~g~l~~r~~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~l~li~l~~~~l~~~~ 178 (595)
T 2yl4_A 114 DKTRTGELINRLSSDTALLGRSVTENLSDGLRAGAQASVGISMMFFVSPNLATFVLSVVPPVSII 178 (595)
T ss_dssp HHSCHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHH
T ss_pred CCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999987 56888888888888888777765444444444433333333
No 7
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=99.48 E-value=5.6e-13 Score=111.92 Aligned_cols=119 Identities=8% Similarity=-0.056 Sum_probs=96.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhccCcccccCCChhHHHHHHHhhHhHHHHHH-HHhHHH
Q psy1504 32 AGGALVLITFLNSLLNAHYNTMSSHIGLRMRAAVCSLVFRKCLKLDMVSTRETAPGQIVNLVSNDVSRFDLVT-VTSHFM 110 (153)
Q Consensus 32 ~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~lr~~if~k~l~l~~~~~~~~~~G~i~~~~t~D~~~i~~~~-~~~~~~ 110 (153)
++..++++.+...++.+...+.+.+.+.+...++|.++|+|++++|.++|+++++|+++|++++|++.+++.+ ..++.+
T Consensus 138 ~~~~~~~l~i~~~~~~~~~~~~~~~~~~r~~~~lR~~~~~~ll~~~~~~fd~~~~G~l~sr~~~D~~~i~~~~~~~l~~~ 217 (1321)
T 4f4c_A 138 VVWSYAAMTVGMWAAGQITVTCYLYVAEQMNNRLRREFVKSILRQEISWFDTNHSGTLATKLFDNLERVKEGTGDKIGMA 217 (1321)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCHHHHHHTCCTTHHHHHHHHHHHHHHTSSHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444556667778888888999999999999999999999999999999999999999999999999999998 568889
Q ss_pred hHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhh
Q psy1504 111 WSSPIISLIVTYIIYKDIGNAAFFGLAAAFCVIPLQLCST 150 (153)
Q Consensus 111 ~~~~i~ii~~~~~l~~~lg~~~l~~~~~~~~~~~~~~~i~ 150 (153)
+..++++++++++++..-+..+++.+.++++..++...+.
T Consensus 218 ~~~~~~~i~~~i~~~~~~~~l~lv~l~~~p~~~~~~~~~~ 257 (1321)
T 4f4c_A 218 FQYLSQFITGFIVAFTHSWQLTLVMLAVTPIQALCGFAIA 257 (1321)
T ss_dssp HHHHHHHHHHHHHHHHHCHHHHHHHHTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999988888876544455555444444444444443
No 8
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=99.39 E-value=8.1e-12 Score=104.76 Aligned_cols=97 Identities=8% Similarity=-0.061 Sum_probs=84.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhccCcccccCCChhHHHHHHHhhHhHHHHHH-HHhHH
Q psy1504 31 VAGGALVLITFLNSLLNAHYNTMSSHIGLRMRAAVCSLVFRKCLKLDMVSTRETAPGQIVNLVSNDVSRFDLVT-VTSHF 109 (153)
Q Consensus 31 ~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~lr~~if~k~l~l~~~~~~~~~~G~i~~~~t~D~~~i~~~~-~~~~~ 109 (153)
.++..++++.+...++.+...+...+.+.+...++|..+|+|++++|..+|+++++|+++||+++|++.+++.+ ..+..
T Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~l~~~~~~~f~~~~~G~l~sr~~~D~~~i~~~~~~~~~~ 188 (1284)
T 3g5u_A 109 TYAYYYTGIGAGVLIVAYIQVSFWCLAAGRQIHKIRQKFFHAIMNQEIGWFDVHDVGELNTRLTDDVSKINEGIGDKIGM 188 (1284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSTTHHHHSCCSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555666777888888888999999999999999999999999999999999999999999999999999998 46788
Q ss_pred HhHHHHHHHHHHHHHHHH
Q psy1504 110 MWSSPIISLIVTYIIYKD 127 (153)
Q Consensus 110 ~~~~~i~ii~~~~~l~~~ 127 (153)
++..++.+++++++++..
T Consensus 189 ~~~~~~~~i~~~~~~~~~ 206 (1284)
T 3g5u_A 189 FFQAMATFFGGFIIGFTR 206 (1284)
T ss_dssp HHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 888888888777777653
No 9
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=99.38 E-value=5.1e-11 Score=100.22 Aligned_cols=117 Identities=9% Similarity=0.005 Sum_probs=92.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhccCcccccC--CChhHHHHHHHhhHhHHHHHH-H
Q psy1504 29 AAVAGGALVLITFLNSLLNAHYNTMSSHIGLRMRAAVCSLVFRKCLKLDMVSTRE--TAPGQIVNLVSNDVSRFDLVT-V 105 (153)
Q Consensus 29 ~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~lr~~if~k~l~l~~~~~~~--~~~G~i~~~~t~D~~~i~~~~-~ 105 (153)
...|+..++++.++..++.+...+...+.+.++..++|..+|+|+++.|.++|+. +++|+++||+++|++.+.+.. .
T Consensus 793 ~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~lr~~l~~~il~~~~~ffd~~~~~~G~i~~r~s~D~~~i~~~l~~ 872 (1321)
T 4f4c_A 793 GHFWALMFLVLAAAQGICSFLMTFFMGIASESLTRDLRNKLFRNVLSQHIGFFDSPQNASGKISTRLATDVPNLRTAIDF 872 (1321)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCSSSTTSGGGCHHHHHHHHHTHHHHHHTTTSH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhccCCCChHHHHhcchhhHHHHHHHHHH
Confidence 4456666777778888889999999999999999999999999999999999985 789999999999999999998 5
Q ss_pred HhHHHhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q psy1504 106 TSHFMWSSPIISLIVTYIIYKDIGNAAFFGLAAAFCVIPL 145 (153)
Q Consensus 106 ~~~~~~~~~i~ii~~~~~l~~~lg~~~l~~~~~~~~~~~~ 145 (153)
.+..++..++.+++++++++..-.+.+++.++++++....
T Consensus 873 ~l~~~~~~~~~~i~~~~~~~~~~~~l~lv~l~~~~~~~~~ 912 (1321)
T 4f4c_A 873 RFSTVITTLVSMVAGIGLAFFYGWQMALLIIAILPIVAFG 912 (1321)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHeeeehHHhHHHHHHHHHHHHHHHHH
Confidence 6788888888887777777654444444444433333333
No 10
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=99.02 E-value=1.1e-08 Score=86.17 Aligned_cols=136 Identities=8% Similarity=0.050 Sum_probs=96.0
Q ss_pred hhHHHHHHHhhhcccCcc-c-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhccCccccc-
Q psy1504 6 TRPFVLGMFLSYFKVAST-T-ATETAAVAGGALVLITFLNSLLNAHYNTMSSHIGLRMRAAVCSLVFRKCLKLDMVSTR- 82 (153)
Q Consensus 6 ~~p~~~~~ii~~~~~~~~-~-~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~lr~~if~k~l~l~~~~~~- 82 (153)
..|.+.+.+++.+..... . .......+...++++.++..++.+...+...+.+.++..++|..+|+|+++.|..+|+
T Consensus 723 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~ff~~ 802 (1284)
T 3g5u_A 723 AFSVIFSKVVGVFTNGGPPETQRQNSNLFSLLFLILGIISFITFFLQGFTFGKAGEILTKRLRYMVFKSMLRQDVSWFDD 802 (1284)
T ss_dssp HHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCSHHHHS
T ss_pred HHHHHHHHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHcC
Confidence 345555666654432111 0 1112224444556666777777788888889999999999999999999999999998
Q ss_pred -CCChhHHHHHHHhhHhHHHHHHH-HhHHHhHHHHHHHHHHHHHHH---HHhHHHHHHHHHHHH
Q psy1504 83 -ETAPGQIVNLVSNDVSRFDLVTV-TSHFMWSSPIISLIVTYIIYK---DIGNAAFFGLAAAFC 141 (153)
Q Consensus 83 -~~~~G~i~~~~t~D~~~i~~~~~-~~~~~~~~~i~ii~~~~~l~~---~lg~~~l~~~~~~~~ 141 (153)
++++|+++|++++|++.+++... .+..++.....++.++++++. .+++..++.++++++
T Consensus 803 ~~~~~G~l~~rl~~D~~~i~~~~~~~l~~~~~~~~~~~~~~i~~~~~~~~l~lv~l~~~p~~~~ 866 (1284)
T 3g5u_A 803 PKNTTGALTTRLANDAAQVKGATGSRLAVIFQNIANLGTGIIISLIYGWQLTLLLLAIVPIIAI 866 (1284)
T ss_dssp CSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSSSHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 57899999999999999999984 567777777777666666553 444455555554333
No 11
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=84.17 E-value=13 Score=28.94 Aligned_cols=31 Identities=13% Similarity=0.058 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q psy1504 41 FLNSLLNAHYNTMSSHIGLRMRAAVCSLVFR 71 (153)
Q Consensus 41 l~~~~~~~~~~~~~~~~~~~~~~~lr~~if~ 71 (153)
+......+...+...+...+++.++-+.+.+
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~ 108 (587)
T 3qf4_A 78 VGGIGCTVFASYASQNFGADLRRDLFRKVLS 108 (587)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 3333344444444445555555555444433
No 12
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=74.42 E-value=29 Score=27.09 Aligned_cols=18 Identities=22% Similarity=0.331 Sum_probs=6.9
Q ss_pred HHHHHHHHhHHHHHHHHH
Q psy1504 51 NTMSSHIGLRMRAAVCSL 68 (153)
Q Consensus 51 ~~~~~~~~~~~~~~lr~~ 68 (153)
.....+...+++.++-+.
T Consensus 102 ~~~~~~~~~~lr~~l~~~ 119 (598)
T 3qf4_B 102 LTLSQDVVFRLRKELFEK 119 (598)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333333333343333333
No 13
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=68.59 E-value=39 Score=26.19 Aligned_cols=31 Identities=16% Similarity=0.056 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHhh
Q psy1504 44 SLLNAHYNTMSSHIGLRMRAAVCSLVFRKCL 74 (153)
Q Consensus 44 ~~~~~~~~~~~~~~~~~~~~~lr~~if~k~l 74 (153)
.+......+.......+....+...+-+++.
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~ 105 (582)
T 3b60_A 75 MILRGITSYISSYCISWVSGKVVMTMRRRLF 105 (582)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444445555555555555555444
No 14
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=67.37 E-value=42 Score=26.10 Aligned_cols=22 Identities=23% Similarity=0.285 Sum_probs=9.1
Q ss_pred HHHHHHHHHHhHHHHHHHHHHH
Q psy1504 49 HYNTMSSHIGLRMRAAVCSLVF 70 (153)
Q Consensus 49 ~~~~~~~~~~~~~~~~lr~~if 70 (153)
.......+...+++.++-+.+.
T Consensus 85 ~~~~~~~~~~~~lr~~l~~~l~ 106 (595)
T 2yl4_A 85 LMQTSGQRIVNRLRTSLFSSIL 106 (595)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444444444444433
No 15
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=65.48 E-value=30 Score=26.81 Aligned_cols=31 Identities=10% Similarity=-0.030 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q psy1504 41 FLNSLLNAHYNTMSSHIGLRMRAAVCSLVFR 71 (153)
Q Consensus 41 l~~~~~~~~~~~~~~~~~~~~~~~lr~~if~ 71 (153)
+......+...+...+...+++.++-+.+.+
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~ 106 (578)
T 4a82_A 76 PIEFIRQYLAQWTSNKILYDIRKKLYNHLQA 106 (578)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 3344444444444445555555554444443
No 16
>1tdp_A Carnobacteriocin B2 immunity protein; four-helix bundle, antimicrobial protein; NMR {Carnobacterium maltaromaticum} SCOP: a.29.8.1
Probab=41.57 E-value=16 Score=21.81 Aligned_cols=41 Identities=20% Similarity=0.257 Sum_probs=28.7
Q ss_pred HhHHHHHHHHHHHHHhhccCcccccCCChhHHHHHHHhhHhH
Q psy1504 58 GLRMRAAVCSLVFRKCLKLDMVSTRETAPGQIVNLVSNDVSR 99 (153)
Q Consensus 58 ~~~~~~~lr~~if~k~l~l~~~~~~~~~~G~i~~~~t~D~~~ 99 (153)
..+-..++|+.+|+-.++|.... ++.+.|.+.+.+++++.+
T Consensus 20 eVk~~p~Lr~~lf~~Ak~L~~~~-d~~~y~~V~~KLs~~IS~ 60 (111)
T 1tdp_A 20 EVKANEFLSKLVVQCAGKLTASN-SENSYIEVISLLSRGISS 60 (111)
T ss_dssp HHHSCHHHHHHHHHHHHHHHTTT-SHHHHHHHHHHHHHHHHH
T ss_pred hhhcCHHHHHHHHHHHHHhccCC-CcchhHhHHHHHHhHHHH
Confidence 34445678999999888886542 223578888888887643
Done!