RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy1504
(153 letters)
>1x5z_A Receptor-type tyrosine-protein phosphatase delta; fibronectin type
III domain containing protein, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: b.1.2.1
Length = 115
Score = 30.4 bits (69), Expect = 0.099
Identities = 11/47 (23%), Positives = 19/47 (40%), Gaps = 5/47 (10%)
Query: 79 VSTRETAPGQIVNLVSNDVSRFDLVTVTSHFMWSSPIISLIVTYIIY 125
V T+ PGQ +N + S + ++ W+ P I Y +
Sbjct: 11 VITQTGVPGQPLNFKAEPESE-TSILLS----WTPPRSDTIANYELV 52
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial;
membrane protein, mitochondrial transport; HET: ACP LMT
CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Length = 595
Score = 30.6 bits (70), Expect = 0.17
Identities = 20/120 (16%), Positives = 45/120 (37%), Gaps = 5/120 (4%)
Query: 8 PFVLGMFL-SYFKVASTTATETAAVAGGALVLITFLNSLLNAHYNTMSSHIGLRMRAAVC 66
PF LG + + + ++ L + + NA + G R+ +
Sbjct: 39 PFFLGKIIDVIYTNPTVDYSDNLTRLCLGLSAVFLCGAAANAIRVYLMQTSGQRIVNRLR 98
Query: 67 SLVFRKCLKLDMVSTRETAPGQIVNLVSNDVSRF-DLVTVT-SHFMWSSPIISLIVTYII 124
+ +F L+ ++ +T G+++N +S+D + VT S + + V +
Sbjct: 99 TSLFSSILRQEVAFFDKTRTGELINRLSSDTALLGRSVTENLSDGLRA--GAQASVGISM 156
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 29.8 bits (66), Expect = 0.35
Identities = 18/107 (16%), Positives = 32/107 (29%), Gaps = 26/107 (24%)
Query: 38 LITFLNSLLNAHYNTMS---------SHIGLRMRAAVCS---LVFRKCL--------KLD 77
++ N + + SHIG ++ +FR K+
Sbjct: 449 IVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIR 508
Query: 78 MVSTRETAPGQIVNLVSNDVSRFDLVTVTSHFMWSSPIISLIVTYII 124
ST A G I+N + L + + P +V I+
Sbjct: 509 HDSTAWNASGSILNTLQ------QLKFYKPYICDNDPKYERLVNAIL 549
Score = 29.8 bits (66), Expect = 0.43
Identities = 17/105 (16%), Positives = 34/105 (32%), Gaps = 19/105 (18%)
Query: 41 FLNSLLNAHYNTMSSHIGLRMRAAVCSLVFRKCLKLDMVSTRETAPGQIVNLVSNDVSRF 100
F+ +L +Y + S I R S++ R + R+ +VSR
Sbjct: 82 FVEEVLRINYKFLMSPIKTEQRQP--SMMTRM-----YIEQRDRLYNDNQVFAKYNVSRL 134
Query: 101 DLVT-VTSHFMWSSPIISLIVTYIIYKDIGNAAFFG---LAAAFC 141
+ + P ++++ +G G +A C
Sbjct: 135 QPYLKLRQALLELRPAKNVLI----DGVLG----SGKTWVALDVC 171
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 30.0 bits (67), Expect = 0.35
Identities = 19/112 (16%), Positives = 37/112 (33%), Gaps = 26/112 (23%)
Query: 18 FKVASTTATETAAVAGG---------ALVLI-----TFLNSLLNAHYNTMSSHIGLRMRA 63
F+ + A+ GG L + + L+ T+S L
Sbjct: 146 FRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSE---LIRTT 202
Query: 64 AVCSLVFRKCLKLDMVS---TRETAPGQIVNLVSNDVSRFDLVTVT--SHFM 110
VF + L+++ P + L+S +S L+ V +H++
Sbjct: 203 LDAEKVFTQ--GLNILEWLENPSNTPDKDY-LLSIPIS-CPLIGVIQLAHYV 250
Score = 29.6 bits (66), Expect = 0.48
Identities = 24/145 (16%), Positives = 43/145 (29%), Gaps = 34/145 (23%)
Query: 6 TRPFVL--GMFLSYFKVASTTATETAAVAGGALVLI-TFLNSLLN-----AHYNTMSSHI 57
TRP L G V A A L F L A + ++
Sbjct: 6 TRPLTLSHGSLEHVLLVP-------TASFFIASQLQEQFNKILPEPTEGFAADDEPTTPA 58
Query: 58 GLRMRAAVCSLVFRKCLKLDMVSTR--ETAPGQIVNLVSNDVSRFDLVTVTSHFMWSSPI 115
L + F L VS+ + GQ +++ ++ F+ + ++ + I
Sbjct: 59 ELVGK-------F-----LGYVSSLVEPSKVGQFDQVLNLCLTEFE-----NCYLEGNDI 101
Query: 116 ISLIVTYIIYKDIGNAAFFGLAAAF 140
+L + D L +
Sbjct: 102 HALAAKLLQENDTTLVKTKELIKNY 126
Score = 27.3 bits (60), Expect = 2.3
Identities = 14/116 (12%), Positives = 36/116 (31%), Gaps = 43/116 (37%)
Query: 58 GLRMRAAVCSLVFRKCLKLDMVSTRETAPGQIVNLVSNDVSRFDLVT-VTSHFMWSSPII 116
G R+R +++F + + + + F + ++ + + S
Sbjct: 1681 GKRIRENYSAMIFETIVDGKLKTEK----------------IFKEINEHSTSYTFRSEKG 1724
Query: 117 SL---------IVT--YIIYKDI-------GNAAFFG--------LAAAFCVIPLQ 146
L + ++D+ +A F G LA+ V+ ++
Sbjct: 1725 LLSATQFTQPALTLMEKAAFEDLKSKGLIPADATFAGHSLGEYAALASLADVMSIE 1780
>1x5l_A Ephrin type-A receptor 8; FN3 domain, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: b.1.2.1
Length = 111
Score = 26.9 bits (60), Expect = 1.4
Identities = 11/49 (22%), Positives = 20/49 (40%), Gaps = 7/49 (14%)
Query: 79 VSTRETAPGQIVNLVSNDVSRFDLVTVTSHFMWSSPIIS--LIVTYIIY 125
S+ + AP Q+V + + V++ W P +I+ Y I
Sbjct: 4 GSSGQAAPSQVVVIRQERAGQ-TSVSLL----WQEPEQPNGIILEYEIK 47
>2djs_A Ephrin type-B receptor 1; tyrosine-protein kinase receptor EPH-2,
NET, HEK6, ELK, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: b.1.2.1
Length = 108
Score = 26.3 bits (58), Expect = 2.8
Identities = 8/48 (16%), Positives = 18/48 (37%), Gaps = 7/48 (14%)
Query: 80 STRETAPGQIVNLVSNDVSRFDLVTVTSHFMWSSPIIS--LIVTYIIY 125
S+ + P + + + +T++ W P +I+ Y I
Sbjct: 2 SSGSSGPSTVPIMHQVSATM-RSITLS----WPQPEQPNGIILDYEIR 44
>2dtg_E Insulin receptor; IR ectodomain, X-RAY crystallography, hormone
receptor/immune system complex; 3.80A {Homo sapiens}
SCOP: b.1.2.1 b.1.2.1 b.1.2.1 c.10.2.5 c.10.2.5 g.3.9.1
PDB: 3loh_E
Length = 897
Score = 26.4 bits (57), Expect = 4.4
Identities = 14/76 (18%), Positives = 26/76 (34%), Gaps = 7/76 (9%)
Query: 79 VSTRETAPGQIVNLVSNDVSRFDLVTVTSHFMWSSPIIS--LIVTYIIYKDIGNAAFFGL 136
V T T P ++ +S S + + W P I Y+++ +
Sbjct: 588 VQTDATNPSVPLDPISVSNSS-SQIILK----WKPPSDPNGNITHYLVFWERQAEDSELF 642
Query: 137 AAAFCVIPLQLCSTYT 152
+C+ L+L S
Sbjct: 643 ELDYCLKGLKLPSRTW 658
>1wfo_A Sidekick 2; FN3, cell adhesion, structural genomics, riken
structural genomics/proteomics initiative, RSGI; NMR
{Homo sapiens} SCOP: b.1.2.1
Length = 130
Score = 25.8 bits (57), Expect = 4.5
Identities = 10/49 (20%), Positives = 18/49 (36%), Gaps = 7/49 (14%)
Query: 79 VSTRETAPGQIVNLVSNDVSRFDLVTVTSHFMWSSPIIS--LIVTYIIY 125
T + PG + ++ +V V + W P +I+ Y I
Sbjct: 21 ERTLDDVPGPPMGILFPEVRT-TSVRLI----WQPPAAPNGIILAYQIT 64
>1x5g_A Neogenin; RGM binding, fibronectin type III domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 116
Score = 25.4 bits (56), Expect = 5.0
Identities = 13/50 (26%), Positives = 18/50 (36%), Gaps = 7/50 (14%)
Query: 79 VSTRETAPGQIVNLVSNDVSRFDLVTVTSHFMWSSPII--SLIVTYIIYK 126
PG NL + S +TVT W +P+ I Y +Y
Sbjct: 11 TQPEVQLPGPAPNLRAYAASP-TSITVT----WETPVSGNGEIQNYKLYY 55
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.328 0.137 0.403
Gapped
Lambda K H
0.267 0.0780 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,203,653
Number of extensions: 115629
Number of successful extensions: 319
Number of sequences better than 10.0: 1
Number of HSP's gapped: 319
Number of HSP's successfully gapped: 13
Length of query: 153
Length of database: 6,701,793
Length adjustment: 85
Effective length of query: 68
Effective length of database: 4,328,508
Effective search space: 294338544
Effective search space used: 294338544
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 53 (24.1 bits)